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Archived Content

Please note this webpage is being maintained as an archive and will not be updated on a regular basis.

Program Publications

Title Author Journal Name PubMedID Journal Abbreviation Publication Date PubMedLink
Designing Videogames to Crowdsource Accelerometer Data Annotation for Activity Recognition Research. Ponnada A, Cooper S, Thapa-Chhetry B, Miller JA, John D, Intille S Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play 31768505 Proc Annu Symp Comput Hum Interact Play 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/31768505
Signaligner Pro: A Tool to Explore and Annotate Multi-day Raw Accelerometer Data. Ponnada A, Cooper S, Tang Q, Thapa-Chhetry B, Miller JA, John D, Intille S Proceedings of the ... IEEE International Conference on Pervasive Computing and Communications. IEEE International Conference on Pervasive Computing and Communications 34458663 Proc IEEE Int Conf Pervasive Comput Commun 2021 Mar https://www.ncbi.nlm.nih.gov/pubmed/34458663
Inferring and Comparing Game Difficulty Curves using Player-vs-Level Match Data. Sarkar A, Cooper S IEEE Conference on Games 2019 : London, United Kingdom, 20-23 August 2019 34355222 IEEE Conf Games 2019 (2019) 2019 Aug https://www.ncbi.nlm.nih.gov/pubmed/34355222
A Deep Learning Model to Predict a Diagnosis of Alzheimer Disease by Using (18)F-FDG PET of the Brain. Ding Y, Sohn JH, Kawczynski MG, Trivedi H, Harnish R, Jenkins NW, Lituiev D, Copeland TP, Aboian MS, Mari Aparici C, Behr SC, Flavell RR, Huang SY, Zalocusky KA, Nardo L, Seo Y, Hawkins RA, Hernandez Pampaloni M, Hadley D, Franc BL Radiology 30398430 Radiology 2019 Feb https://www.ncbi.nlm.nih.gov/pubmed/30398430
Precision annotation of digital samples in NCBI's gene expression omnibus. Hadley D, Pan J, El-Sayed O, Aljabban J, Aljabban I, Azad TD, Hadied MO, Raza S, Rayikanti BA, Chen B, Paik H, Aran D, Spatz J, Himmelstein D, Panahiazar M, Bhattacharya S, Sirota M, Musen MA, Butte AJ Scientific data 28925997 Sci Data 2017 Sep 19 https://www.ncbi.nlm.nih.gov/pubmed/28925997
Systematic integration of biomedical knowledge prioritizes drugs for repurposing. Himmelstein DS, Lizee A, Hessler C, Brueggeman L, Chen SL, Hadley D, Green A, Khankhanian P, Baranzini SE eLife 28936969 Elife 2017 Sep 22 https://www.ncbi.nlm.nih.gov/pubmed/28936969
Metaanalysis Reveals Genetic Correlates of Osteoporosis Pathogenesis. Hasan LK, Aljabban J, Rohr M, Mukhtar M, Adapa N, Salim R, Aljabban N, Syed S, Syed S, Panahiazar M, Hadley D, Jarjour W The Journal of rheumatology 33262303 J Rheumatol 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/33262303
Characterization of monoclonal gammopathy of undetermined significance progression to multiple myeloma through meta-analysis of GEO data. Aljabban J, Syed S, Syed S, Rohr M, Mukhtar M, Aljabban H, Cottini F, Mohammed M, Hughes T, Gonzalez T, Panahiazr M, Hadley D, Benson D Heliyon 37539132 Heliyon 2023 Jul https://www.ncbi.nlm.nih.gov/pubmed/37539132
Empowering study of breast cancer data with application of artificial intelligence technology: promises, challenges, and use cases. Panahiazar M, Chen N, Lituiev D, Hadley D Clinical & experimental metastasis 34697751 Clin Exp Metastasis 2022 Feb https://www.ncbi.nlm.nih.gov/pubmed/34697751
Investigating genetic drivers of dermatomyositis pathogenesis using meta-analysis. Aljabban J, Syed S, Syed S, Rohr M, Weisleder N, McElhanon KE, Hasan L, Safeer L, Hoffman K, Aljabban N, Mukhtar M, Adapa N, Allarakhia Z, Panahiazar M, Neuhaus I, Kim S, Hadley D, Jarjour W Heliyon 33015383 Heliyon 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/33015383
Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 1: From Methodology to Clinical Implementation. Shaikh F, Franc B, Allen E, Sala E, Awan O, Hendrata K, Halabi S, Mohiuddin S, Malik S, Hadley D, Shrestha R Journal of the American College of Radiology : JACR 29366600 J Am Coll Radiol 2018 Mar https://www.ncbi.nlm.nih.gov/pubmed/29366600
Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research. Chen B, Sirota M, Fan-Minogue H, Hadley D, Butte AJ BMC medical genomics 26043652 BMC Med Genomics 2015 https://www.ncbi.nlm.nih.gov/pubmed/26043652
From cirrhosis to hepatocellular carcinoma: An investigation into hepatitis C viral oncogenesis. Aljabban J, Danis N, Gurakar M, Khorfan K, Aljabban N, Simsek C, Salhi H, Panahiazar M, Hadley D, Gurakar A, Saberi B Hepatology forum 35949665 Hepatol Forum 2020 Jan https://www.ncbi.nlm.nih.gov/pubmed/35949665
Prediction of future healthcare expenses of patients from chest radiographs using deep learning: a pilot study. Sohn JH, Chen Y, Lituiev D, Yang J, Ordovas K, Hadley D, Vu TH, Franc BL, Seo Y Scientific reports 35585177 Sci Rep 2022 May 18 https://www.ncbi.nlm.nih.gov/pubmed/35585177
Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 2: From Clinical Implementation to Enterprise. Shaikh F, Franc B, Allen E, Sala E, Awan O, Hendrata K, Halabi S, Mohiuddin S, Malik S, Hadley D, Shrestha R Journal of the American College of Radiology : JACR 29366598 J Am Coll Radiol 2018 Mar https://www.ncbi.nlm.nih.gov/pubmed/29366598
Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers. Lituiev DS, Trivedi H, Panahiazar M, Norgeot B, Seo Y, Franc B, Harnish R, Kawczynski M, Hadley D Journal of digital imaging 30465142 J Digit Imaging 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/30465142
A merged microarray meta-dataset for transcriptionally profiling colorectal neoplasm formation and progression. Rohr M, Beardsley J, Nakkina SP, Zhu X, Aljabban J, Hadley D, Altomare D Scientific data 34381057 Sci Data 2021 Aug 11 https://www.ncbi.nlm.nih.gov/pubmed/34381057
Meta-Analysis illustrates possible role of lipopolysaccharide (LPS)-induced tissue injury in nasopharyngeal carcinoma (NPC) pathogenesis. Allen DZ, Aljabban J, Silverman D, McDermott S, Wanner RA, Rohr M, Hadley D, Panahiazar M PloS one 34648530 PLoS One 2021 https://www.ncbi.nlm.nih.gov/pubmed/34648530
Transcriptome changes in stages of non-alcoholic fatty liver disease. Aljabban J, Rohr M, Syed S, Khorfan K, Borkowski V, Aljabban H, Segal M, Mukhtar M, Mohammed M, Panahiazar M, Hadley D, Spengler R, Spengler E World journal of hepatology 36158924 World J Hepatol 2022 Jul 27 https://www.ncbi.nlm.nih.gov/pubmed/36158924
Dissecting novel mechanisms of hepatitis B virus related hepatocellular carcinoma using meta-analysis of public data. Aljabban J, Rohr M, Syed S, Cohen E, Hashi N, Syed S, Khorfan K, Aljabban H, Borkowski V, Segal M, Mukhtar M, Mohammed M, Boateng E, Nemer M, Panahiazar M, Hadley D, Jalil S, Mumtaz K World journal of gastrointestinal oncology 36187396 World J Gastrointest Oncol 2022 Sep 15 https://www.ncbi.nlm.nih.gov/pubmed/36187396
Large Scale Semi-Automated Labeling of Routine Free-Text Clinical Records for Deep Learning. Trivedi HM, Panahiazar M, Liang A, Lituiev D, Chang P, Sohn JH, Chen YY, Franc BL, Joe B, Hadley D Journal of digital imaging 30128778 J Digit Imaging 2019 Feb https://www.ncbi.nlm.nih.gov/pubmed/30128778
Meta-Analysis Reveals the Prognostic Relevance of Nuclear and Membrane-Associated Bile Acid Receptors in Gastric Cancer. Rohr M, Aljabban J, Rudeski-Rohr T, Lessans S, Nakkina SP, Hadley D, Zhu X, Altomare DA Clinical and translational gastroenterology 33492921 Clin Transl Gastroenterol 2021 Jan 12 https://www.ncbi.nlm.nih.gov/pubmed/33492921
Probing predilection to Crohn's disease and Crohn's disease flares: A crowd-sourced bioinformatics approach. Aljabban J, Rohr M, Borkowski VJ, Nemer M, Cohen E, Hashi N, Aljabban H, Boateng E, Syed S, Mohammed M, Mukhtar A, Hadley D, Panahiazar M Journal of pathology informatics 36268056 J Pathol Inform 2022 https://www.ncbi.nlm.nih.gov/pubmed/36268056
Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization. Bravo RR, Baratchart E, West J, Schenck RO, Miller AK, Gallaher J, Gatenbee CD, Basanta D, Robertson-Tessi M, Anderson ARA PLoS computational biology 32155140 PLoS Comput Biol 2020 Mar https://www.ncbi.nlm.nih.gov/pubmed/32155140
Phase i trials in melanoma: A framework to translate preclinical findings to the clinic. Kim E, Rebecca VW, Smalley KS, Anderson AR European journal of cancer (Oxford, England : 1990) 27689717 Eur J Cancer 2016 Nov https://www.ncbi.nlm.nih.gov/pubmed/27689717
Repurposing Citizen Science Games as Software Tools for Professional Scientists. Cooper S, Sterling ALR, Kleffner R, Silversmith WM, Siegel JB FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games 30465045 FDG 2018 Aug https://www.ncbi.nlm.nih.gov/pubmed/30465045
Collaborative Problem Solving in an Open-Ended Scientific Discovery Game. Bauer A, Popović Z Proceedings of the ACM on human-computer interaction 30198019 Proc ACM Hum Comput Interact 2017 Nov https://www.ncbi.nlm.nih.gov/pubmed/30198019
Creating custom Foldit puzzles for teaching biochemistry. Dsilva L, Mittal S, Koepnick B, Flatten J, Cooper S, Horowitz S Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology 30638297 Biochem Mol Biol Educ 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/30638297
Expertise and Engagement: Re-Designing Citizen Science Games With Players' Minds in Mind. Miller JA, Narayan U, Hantsbarger M, Cooper S, El-Nasr MS FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games 31788674 FDG 2019 Aug https://www.ncbi.nlm.nih.gov/pubmed/31788674
Macromolecular modeling and design in Rosetta: recent methods and frameworks. Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, Bradley P, Bystroff C, Conway P, Cooper S, Correia BE, Coventry B, Das R, De Jong RM, DiMaio F, Dsilva L, Dunbrack R, Ford AS, Frenz B, Fu DY, Geniesse C, Goldschmidt L, Gowthaman R, Gray JJ, Gront D, Guffy S, Horowitz S, Huang PS, Huber T, Jacobs TM, Jeliazkov JR, Johnson DK, Kappel K, Karanicolas J, Khakzad H, Khar KR, Khare SD, Khatib F, Khramushin A, King IC, Kleffner R, Koepnick B, Kortemme T, Kuenze G, Kuhlman B, Kuroda D, Labonte JW, Lai JK, Lapidoth G, Leaver-Fay A, Lindert S, Linsky T, London N, Lubin JH, Lyskov S, Maguire J, Malmström L, Marcos E, Marcu O, Marze NA, Meiler J, Moretti R, Mulligan VK, Nerli S, Norn C, Ó'Conchúir S, Ollikainen N, Ovchinnikov S, Pacella MS, Pan X, Park H, Pavlovicz RE, Pethe M, Pierce BG, Pilla KB, Raveh B, Renfrew PD, Burman SSR, Rubenstein A, Sauer MF, Scheck A, Schief W, Schueler-Furman O, Sedan Y, Sevy AM, Sgourakis NG, Shi L, Siegel JB, Silva DA, Smith S, Song Y, Stein A, Szegedy M, Teets FD, Thyme SB, Wang RY, Watkins A, Zimmerman L, Bonneau R Nature methods 32483333 Nat Methods 2020 Jul https://www.ncbi.nlm.nih.gov/pubmed/32483333
A Monte Carlo Approach to Skill-Based Automated Playtesting. Horn B, Miller JA, Smith G, Cooper S Proceedings. AAAI Artificial Intelligence and Interactive Digital Entertainment Conference 30613687 Proc AAAI Artif Intell Interact Digit Enterain Conf 2018 Nov https://www.ncbi.nlm.nih.gov/pubmed/30613687
Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. Khatib F, Desfosses A, Foldit Players, Koepnick B, Flatten J, Popović Z, Baker D, Cooper S, Gutsche I, Horowitz S PLoS biology 31714936 PLoS Biol 2019 Nov https://www.ncbi.nlm.nih.gov/pubmed/31714936
To Three or not to Three: Improving Human Computation Game Onboarding with a Three-Star System. Gaston J, Cooper S Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference 29082386 Proc SIGCHI Conf Hum Factor Comput Syst 2017 https://www.ncbi.nlm.nih.gov/pubmed/29082386
Large-Scale Analysis of Visualization Options in a Citizen Science Game. Miller JA, Lee V, Cooper S, El-Nasr MS Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play 33860290 Proc Annu Symp Comput Hum Interact Play 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/33860290
De novo protein design by citizen scientists. Koepnick B, Flatten J, Husain T, Ford A, Silva DA, Bick MJ, Bauer A, Liu G, Ishida Y, Boykov A, Estep RD, Kleinfelter S, Nørgård-Solano T, Wei L, Players F, Montelione GT, DiMaio F, Popović Z, Khatib F, Cooper S, Baker D Nature 31168091 Nature 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/31168091
Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. Kleffner R, Flatten J, Leaver-Fay A, Baker D, Siegel JB, Khatib F, Cooper S Bioinformatics (Oxford, England) 28481970 Bioinformatics 2017 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/28481970
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data. Pratapa A, Jalihal AP, Law JN, Bharadwaj A, Murali TM Nature methods 31907445 Nat Methods 2020 Feb https://www.ncbi.nlm.nih.gov/pubmed/31907445
GraphSpace: stimulating interdisciplinary collaborations in network biology. Bharadwaj A, Singh DP, Ritz A, Tegge AN, Poirel CL, Kraikivski P, Adames N, Luther K, Kale SD, Peccoud J, Tyson JJ, Murali TM Bioinformatics (Oxford, England) 28957495 Bioinformatics 2017 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/28957495
Enabling an Open Data Ecosystem for the Neurosciences. Wiener M, Sommer FT, Ives ZG, Poldrack RA, Litt B Neuron 27810004 Neuron 2016 Nov 2 https://www.ncbi.nlm.nih.gov/pubmed/27810004
Syntactic Patterns Improve Information Extraction for Medical Search. Patel R, Yang Y, Marshall I, Nenkova A, Wallace BC Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting 30306147 Proc Conf 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/30306147
Aggregating and Predicting Sequence Labels from Crowd Annotations. Nguyen AT, Wallace BC, Li JJ, Nenkova A, Lease M Proceedings of the conference. Association for Computational Linguistics. Meeting 29093611 Proc Conf Assoc Comput Linguist Meet 2017 https://www.ncbi.nlm.nih.gov/pubmed/29093611
What Does the Evidence Say? Models to Help Make Sense of the Biomedical Literature. Wallace BC IJCAI : proceedings of the conference 34025086 IJCAI (U S) 2019 Aug https://www.ncbi.nlm.nih.gov/pubmed/34025086
An exploration of crowdsourcing citation screening for systematic reviews. Mortensen ML, Adam GP, Trikalinos TA, Kraska T, Wallace BC Research synthesis methods 28677322 Res Synth Methods 2017 Sep https://www.ncbi.nlm.nih.gov/pubmed/28677322
Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach. Wallace BC, Noel-Storr A, Marshall IJ, Cohen AM, Smalheiser NR, Thomas J Journal of the American Medical Informatics Association : JAMIA 28541493 J Am Med Inform Assoc 2017 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/28541493
Enabling an Open Data Ecosystem for the Neurosciences. Wiener M, Sommer FT, Ives ZG, Poldrack RA, Litt B Neuron 27883904 Neuron 2016 Nov 23 https://www.ncbi.nlm.nih.gov/pubmed/27883904
Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide. Marshall IJ, Noel-Storr A, Kuiper J, Thomas J, Wallace BC Research synthesis methods 29314757 Res Synth Methods 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/29314757
A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature. Nye B, Jessy Li J, Patel R, Yang Y, Marshall IJ, Nenkova A, Wallace BC Proceedings of the conference. Association for Computational Linguistics. Meeting 30305770 Proc Conf Assoc Comput Linguist Meet 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/30305770
Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology. Bae JA, Mu S, Kim JS, Turner NL, Tartavull I, Kemnitz N, Jordan CS, Norton AD, Silversmith WM, Prentki R, Sorek M, David C, Jones DL, Bland D, Sterling ALR, Park J, Briggman KL, Seung HS, Eyewirers Cell 29775596 Cell 2018 May 17 https://www.ncbi.nlm.nih.gov/pubmed/29775596
Cyclic structure with cellular precision in a vertebrate sensorimotor neural circuit. Yang R, Vishwanathan A, Wu J, Kemnitz N, Ih D, Turner N, Lee K, Tartavull I, Silversmith WM, Jordan CS, David C, Bland D, Sterling A, Goldman MS, Aksay ERF, Seung HS, Eyewirers Current biology : CB 37236180 Curr Biol 2023 Jun 5 https://www.ncbi.nlm.nih.gov/pubmed/37236180
Predicting modular functions and neural coding of behavior from a synaptic wiring diagram. Vishwanathan A, Sood A, Wu J, Ramirez AD, Yang R, Kemnitz N, Ih D, Turner N, Lee K, Tartavull I, Silversmith WM, Jordan CS, David C, Bland D, Sterling A, Seung HS, Goldman MS, Aksay ERF, Eyewirers Nature neuroscience 39578573 Nat Neurosci 2024 Dec https://www.ncbi.nlm.nih.gov/pubmed/39578573
Leveraging medical context to recommend semantically similar terms for chart reviews. Ye C, Malin BA, Fabbri D BMC medical informatics and decision making 34922536 BMC Med Inform Decis Mak 2021 Dec 18 https://www.ncbi.nlm.nih.gov/pubmed/34922536
Crowdsourcing to delineate skin affected by chronic graft-vs-host disease. Tkaczyk ER, Coco JR, Wang J, Chen F, Ye C, Jagasia MH, Dawant BM, Fabbri D Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) 30786065 Skin Res Technol 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/30786065
Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews. Ye C, Fabbri D Journal of biomedical informatics 29793071 J Biomed Inform 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/29793071
A Crowdsourcing Framework for Medical Data Sets. Ye C, Coco J, Epishova A, Hajaj C, Bogardus H, Novak L, Denny J, Vorobeychik Y, Lasko T, Malin B, Fabbri D AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 29888085 AMIA Jt Summits Transl Sci Proc 2018 https://www.ncbi.nlm.nih.gov/pubmed/29888085
ERC analysis: web-based inference of gene function via evolutionary rate covariation. Wolfe NW, Clark NL Bioinformatics (Oxford, England) 26243019 Bioinformatics 2015 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/26243019
Trans-species learning of cellular signaling systems with bimodal deep belief networks. Chen L, Cai C, Chen V, Lu X Bioinformatics (Oxford, England) 25995230 Bioinformatics 2015 Sep 15 https://www.ncbi.nlm.nih.gov/pubmed/25995230
Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets. Lu S, Lu KN, Cheng SY, Hu B, Ma X, Nystrom N, Lu X PLoS computational biology 26317392 PLoS Comput Biol 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26317392
Causal Clustering for 1-Factor Measurement Models. Kummerfeld E, Ramsey J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 27766182 KDD 2016 https://www.ncbi.nlm.nih.gov/pubmed/27766182
A Hybrid Causal Search Algorithm for Latent Variable Models. Ogarrio JM, Spirtes P, Ramsey J JMLR workshop and conference proceedings 28239434 JMLR Workshop Conf Proc 2016 Aug https://www.ncbi.nlm.nih.gov/pubmed/28239434
A regulatory circuit of miR-125b/miR-20b and Wnt signalling controls glioblastoma phenotypes through FZD6-modulated pathways. Huang T, Alvarez AA, Pangeni RP, Horbinski CM, Lu S, Kim SH, James CD, J Raizer J, A Kessler J, Brenann CW, Sulman EP, Finocchiaro G, Tan M, Nishikawa R, Lu X, Nakano I, Hu B, Cheng SY Nature communications 27698350 Nat Commun 2016 Oct 4 https://www.ncbi.nlm.nih.gov/pubmed/27698350
Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals. Chikina M, Robinson JD, Clark NL Molecular biology and evolution 27329977 Mol Biol Evol 2016 Sep https://www.ncbi.nlm.nih.gov/pubmed/27329977
Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization. Ponzoni L, Zhang S, Cheng MH, Bahar I Philosophical transactions of the Royal Society of London. Series B, Biological sciences 29735731 Philos Trans R Soc Lond B Biol Sci 2018 Jun 19 https://www.ncbi.nlm.nih.gov/pubmed/29735731
Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. Meyer WK, Jamison J, Richter R, Woods SE, Partha R, Kowalczyk A, Kronk C, Chikina M, Bonde RK, Crocker DE, Gaspard J, Lanyon JM, Marsillach J, Furlong CE, Clark NL Science (New York, N.Y.) 30093596 Science 2018 Aug 10 https://www.ncbi.nlm.nih.gov/pubmed/30093596
Mixed graphical models for integrative causal analysis with application to chronic lung disease diagnosis and prognosis. Sedgewick AJ, Buschur K, Shi I, Ramsey JD, Raghu VK, Manatakis DV, Zhang Y, Bon J, Chandra D, Karoleski C, Sciurba FC, Spirtes P, Glymour C, Benos PV Bioinformatics (Oxford, England) 30192904 Bioinformatics 2019 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/30192904
Causal Discovery from Nonstationary/Heterogeneous Data: Skeleton Estimation and Orientation Determination. Zhang K, Huang B, Zhang J, Glymour C, Schölkopf B IJCAI : proceedings of the conference 28966540 IJCAI (U S) 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/28966540
Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings. Sauerwald N, Zhang S, Kingsford C, Bahar I Nucleic acids research 28334818 Nucleic Acids Res 2017 Apr 20 https://www.ncbi.nlm.nih.gov/pubmed/28334818
Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics. Ding MQ, Chen L, Cooper GF, Young JD, Lu X Molecular cancer research : MCR 29133589 Mol Cancer Res 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/29133589
Inferring causation from time series in Earth system sciences. Runge J, Bathiany S, Bollt E, Camps-Valls G, Coumou D, Deyle E, Glymour C, Kretschmer M, Mahecha MD, Muñoz-Marí J, van Nes EH, Peters J, Quax R, Reichstein M, Scheffer M, Schölkopf B, Spirtes P, Sugihara G, Sun J, Zhang K, Zscheischler J Nature communications 31201306 Nat Commun 2019 Jun 14 https://www.ncbi.nlm.nih.gov/pubmed/31201306
Integrating data and knowledge to identify functional modules of genes: a multilayer approach. Liang L, Chen V, Zhu K, Fan X, Lu X, Lu S BMC bioinformatics 31046665 BMC Bioinformatics 2019 May 2 https://www.ncbi.nlm.nih.gov/pubmed/31046665
Behind Distribution Shift: Mining Driving Forces of Changes and Causal Arrows. Huang B, Zhang K, Zhang J, Sanchez-Romero R, Glymour C, Schölkopf B Proceedings. IEEE International Conference on Data Mining 31068766 Proc IEEE Int Conf Data Min 2017 Nov https://www.ncbi.nlm.nih.gov/pubmed/31068766
BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization. Liang L, Zhu K, Lu S Bioinformatics (Oxford, England) 31913438 Bioinformatics 2020 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/31913438
Domain Generalization via Multidomain Discriminant Analysis. Hu S, Zhang K, Chen Z, Chan L Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence 31555066 Uncertain Artif Intell 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/31555066
Learning to encode cellular responses to systematic perturbations with deep generative models. Xue Y, Ding MQ, Lu X NPJ systems biology and applications 33159077 NPJ Syst Biol Appl 2020 Nov 6 https://www.ncbi.nlm.nih.gov/pubmed/33159077
Pan-mammalian analysis of molecular constraints underlying extended lifespan. Kowalczyk A, Partha R, Clark NL, Chikina M eLife 32043462 Elife 2020 Feb 11 https://www.ncbi.nlm.nih.gov/pubmed/32043462
Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis. Adams TS, Schupp JC, Poli S, Ayaub EA, Neumark N, Ahangari F, Chu SG, Raby BA, DeIuliis G, Januszyk M, Duan Q, Arnett HA, Siddiqui A, Washko GR, Homer R, Yan X, Rosas IO, Kaminski N Science advances 32832599 Sci Adv 2020 Jul https://www.ncbi.nlm.nih.gov/pubmed/32832599
Unmixing for Causal Inference: Thoughts on McCaffrey and Danks. Zhang K, Glymour MRK The British journal for the philosophy of science 33376450 Br J Philos Sci 2020 Dec https://www.ncbi.nlm.nih.gov/pubmed/33376450
Patient-Specific Modeling with Personalized Decision Paths. Johnson A, Cooper GF, Visweswaran S AMIA ... Annual Symposium proceedings. AMIA Symposium 33936434 AMIA Annu Symp Proc 2020 https://www.ncbi.nlm.nih.gov/pubmed/33936434
A new method for estimating the probability of causal relationships from observational data: Application to the study of the short-term effects of air pollution on cardiovascular and respiratory disease. Andrews B, Wongchokprasitti C, Visweswaran S, Lakhani CM, Patel CJ, Cooper GF Artificial intelligence in medicine 37100513 Artif Intell Med 2023 May https://www.ncbi.nlm.nih.gov/pubmed/37100513
Complementary evolution of coding and noncoding sequence underlies mammalian hairlessness. Kowalczyk A, Chikina M, Clark N eLife 36342464 Elife 2022 Nov 7 https://www.ncbi.nlm.nih.gov/pubmed/36342464
In situ functional cell phenotyping reveals microdomain networks in colorectal cancer recurrence. Furman SA, Stern AM, Uttam S, Taylor DL, Pullara F, Chennubhotla SC Cell reports methods 34888541 Cell Rep Methods 2021 Sep 27 https://www.ncbi.nlm.nih.gov/pubmed/34888541
Small airways pathology in idiopathic pulmonary fibrosis: a retrospective cohort study. Verleden SE, Tanabe N, McDonough JE, Vasilescu DM, Xu F, Wuyts WA, Piloni D, De Sadeleer L, Willems S, Mai C, Hostens J, Cooper JD, Verbeken EK, Verschakelen J, Galban CJ, Van Raemdonck DE, Colby TV, Decramer M, Verleden GM, Kaminski N, Hackett TL, Vanaudenaerde BM, Hogg JC The Lancet. Respiratory medicine 32061334 Lancet Respir Med 2020 Jun https://www.ncbi.nlm.nih.gov/pubmed/32061334
Spatial domain analysis predicts risk of colorectal cancer recurrence and infers associated tumor microenvironment networks. Uttam S, Stern AM, Sevinsky CJ, Furman S, Pullara F, Spagnolo D, Nguyen L, Gough A, Ginty F, Lansing Taylor D, Chakra Chennubhotla S Nature communications 32665557 Nat Commun 2020 Jul 14 https://www.ncbi.nlm.nih.gov/pubmed/32665557
Learning causality and causality-related learning: some recent progress. Zhang K, Schölkopf B, Spirtes P, Glymour C National science review 30034911 Natl Sci Rev 2018 Jan https://www.ncbi.nlm.nih.gov/pubmed/30034911
A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways. Lu S, Fan X, Chen L, Lu X PloS one 30208101 PLoS One 2018 https://www.ncbi.nlm.nih.gov/pubmed/30208101
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Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture. Can A, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R Stroke 29622625 Stroke 2018 May https://www.ncbi.nlm.nih.gov/pubmed/29622625
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Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study. Can A, Rudy RF, Castro VM, Yu S, Dligach D, Finan S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R Neurology 30135253 Neurology 2018 Sep 18 https://www.ncbi.nlm.nih.gov/pubmed/30135253
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Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions. Xia Y, Cai T, Cai TT Biometrika 28502988 Biometrika 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/28502988
Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms. Can A, Lai PMR, Castro VM, Yu S, Dligach D, Finan S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R Scientific reports 30988354 Sci Rep 2019 Apr 15 https://www.ncbi.nlm.nih.gov/pubmed/30988354
Phenome-wide profiling identifies genotype-phenotype associations in Phelan-McDermid syndrome using family-sourced data from an international registry. Yin R, Wack M, Hassen-Khodja C, McDuffie MT, Bliss G, Horn EJ, Kothari C, McLarney B, Davis R, Hanson K, O'Boyle M, Betancur C, Avillach P Molecular autism 39350236 Mol Autism 2024 Sep 30 https://www.ncbi.nlm.nih.gov/pubmed/39350236
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Machine learning on drug-specific data to predict small molecule teratogenicity. Challa AP, Beam AL, Shen M, Peryea T, Lavieri RR, Lippmann ES, Aronoff DM Reproductive toxicology (Elmsford, N.Y.) 32428651 Reprod Toxicol 2020 Aug https://www.ncbi.nlm.nih.gov/pubmed/32428651
Association Between Anti-Citrullinated Fibrinogen Antibodies and Coronary Artery Disease in Rheumatoid Arthritis. Hejblum BP, Cui J, Lahey LJ, Cagan A, Sparks JA, Sokolove J, Cai T, Liao KP Arthritis care & research 28992379 Arthritis Care Res (Hoboken) 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/28992379
Investigating inequities in hospital care among lesbian, gay, bisexual, and transgender (LGBT) individuals using social media. Hswen Y, Sewalk KC, Alsentzer E, Tuli G, Brownstein JS, Hawkins JB Social science & medicine (1982) 30219749 Soc Sci Med 2018 Oct https://www.ncbi.nlm.nih.gov/pubmed/30219749
Systematic identification of correlates of HIV infection: an X-wide association study. Patel CJ, Bhattacharya J, Ioannidis JPA, Bendavid E AIDS (London, England) 29424772 AIDS 2018 Apr 24 https://www.ncbi.nlm.nih.gov/pubmed/29424772
PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. Sinnott JA, Cai F, Yu S, Hejblum BP, Hong C, Kohane IS, Liao KP Journal of the American Medical Informatics Association : JAMIA 29788308 J Am Med Inform Assoc 2018 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/29788308
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Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms. Can A, Rudy RF, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R Stroke 29844027 Stroke 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/29844027
Grappling with the Future Use of Big Data for Translational Medicine and Clinical Care. Murphy S, Castro V, Mandl K Yearbook of medical informatics 29063545 Yearb Med Inform 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/29063545
A review of validation strategies for computational drug repositioning. Brown AS, Patel CJ Briefings in bioinformatics 27881429 Brief Bioinform 2018 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/27881429
Surrogate-assisted feature extraction for high-throughput phenotyping. Yu S, Chakrabortty A, Liao KP, Cai T, Ananthakrishnan AN, Gainer VS, Churchill SE, Szolovits P, Murphy SN, Kohane IS, Cai T Journal of the American Medical Informatics Association : JAMIA 27632993 J Am Med Inform Assoc 2017 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/27632993
Efficient Queries of Stand-off Annotations for Natural Language Processing on Electronic Medical Records. Luo Y, Szolovits P Biomedical informatics insights 27478379 Biomed Inform Insights 2016 https://www.ncbi.nlm.nih.gov/pubmed/27478379
Analytic Complexity and Challenges in Identifying Mixtures of Exposures Associated with Phenotypes in the Exposome Era. Patel CJ Current epidemiology reports 28251040 Curr Epidemiol Rep 2017 https://www.ncbi.nlm.nih.gov/pubmed/28251040
Augmented estimation for t-year survival with censored regression models. Zheng Y, Cai T Biometrics 28294286 Biometrics 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/28294286
The Exposome Research Paradigm: an Opportunity to Understand the Environmental Basis for Human Health and Disease. Buck Louis GM, Smarr MM, Patel CJ Current environmental health reports 28194614 Curr Environ Health Rep 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/28194614
L(1)-Regularized Least Squares for Support Recovery of High Dimensional Single Index Models with Gaussian Designs. Neykov M, Liu JS, Cai T Journal of machine learning research : JMLR 28503101 J Mach Learn Res 2016 May https://www.ncbi.nlm.nih.gov/pubmed/28503101
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Using Twitter to Detect Psychological Characteristics of Self-Identified Persons With Autism Spectrum Disorder: A Feasibility Study. Hswen Y, Gopaluni A, Brownstein JS, Hawkins JB JMIR mHealth and uHealth 30747718 JMIR Mhealth Uhealth 2019 Feb 12 https://www.ncbi.nlm.nih.gov/pubmed/30747718
Deep Learning Benchmarks on L1000 Gene Expression Data. McDermott MBA, Wang J, Zhao WN, Sheridan SD, Szolovits P, Kohane I, Haggarty SJ, Perlis RH IEEE/ACM transactions on computational biology and bioinformatics 30990190 IEEE/ACM Trans Comput Biol Bioinform 2020 Nov-Dec https://www.ncbi.nlm.nih.gov/pubmed/30990190
Assessing incremental value of biomarkers with multi-phase nested case-control studies. Zhou QM, Zheng Y, Chibnik LB, Karlson EW, Cai T Biometrics 26195245 Biometrics 2015 Dec https://www.ncbi.nlm.nih.gov/pubmed/26195245
Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Luo Y, Uzuner Ö, Szolovits P Briefings in bioinformatics 26851224 Brief Bioinform 2017 Jan https://www.ncbi.nlm.nih.gov/pubmed/26851224
Use of social media to assess the impact of equitable state policies on LGBTQ patient experiences: An exploratory study. Hswen Y, Zhang A, Sewalk K, Tuli G, Brownstein JS, Hawkins JB Healthcare (Amsterdam, Netherlands) 32241681 Healthc (Amst) 2020 Jun https://www.ncbi.nlm.nih.gov/pubmed/32241681
GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets. Gutiérrez-Sacristán A, De Niz C, Kothari C, Kong SW, Mandl KD, Avillach P Briefings in bioinformatics 32249310 Brief Bioinform 2021 Jan 18 https://www.ncbi.nlm.nih.gov/pubmed/32249310
Prediction of chronological and biological age from laboratory data. Sagers L, Melas-Kyriazi L, Patel CJ, Manrai AK Aging 32391803 Aging (Albany NY) 2020 May 5 https://www.ncbi.nlm.nih.gov/pubmed/32391803
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. Liao KP, Sun J, Cai TA, Link N, Hong C, Huang J, Huffman JE, Gronsbell J, Zhang Y, Ho YL, Castro V, Gainer V, Murphy SN, O'Donnell CJ, Gaziano JM, Cho K, Szolovits P, Kohane IS, Yu S, Cai T Journal of the American Medical Informatics Association : JAMIA 31613361 J Am Med Inform Assoc 2019 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/31613361
Large-Scale Simultaneous Testing of Cross-Covariance Matrices with Applications to PheWAS. Cai T, Cai TT, Liao K, Liu W Statistica Sinica 31889766 Stat Sin 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/31889766
Tobacco use and age are associated with different morphologic features of anterior communicating artery aneurysms. Zhang J, Lai PMR, Can A, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R Scientific reports 33637879 Sci Rep 2021 Feb 26 https://www.ncbi.nlm.nih.gov/pubmed/33637879
HyperMinHash: MinHash in LogLog space. Yu YW, Weber GM IEEE transactions on knowledge and data engineering 38288326 IEEE Trans Knowl Data Eng 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/38288326
Risk of Type 2 Diabetes Is Lower in US Adults Taking Chromium-Containing Supplements. McIver DJ, Grizales AM, Brownstein JS, Goldfine AB The Journal of nutrition 26446484 J Nutr 2015 Dec https://www.ncbi.nlm.nih.gov/pubmed/26446484
A predictive enrichment procedure to identify potential responders to a new therapy for randomized, comparative controlled clinical studies. Li J, Zhao L, Tian L, Cai T, Claggett B, Callegaro A, Dizier B, Spiessens B, Ulloa-Montoya F, Wei LJ Biometrics 26689167 Biometrics 2016 Sep https://www.ncbi.nlm.nih.gov/pubmed/26689167
Tensor factorization toward precision medicine. Luo Y, Wang F, Szolovits P Briefings in bioinformatics 26994614 Brief Bioinform 2017 May 1 https://www.ncbi.nlm.nih.gov/pubmed/26994614
Identifying predictive markers for personalized treatment selection. Shen Y, Cai T Biometrics 26999054 Biometrics 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/26999054
Enabling phenotypic big data with PheNorm. Yu S, Ma Y, Gronsbell J, Cai T, Ananthakrishnan AN, Gainer VS, Churchill SE, Szolovits P, Murphy SN, Kohane IS, Liao KP, Cai T Journal of the American Medical Informatics Association : JAMIA 29126253 J Am Med Inform Assoc 2018 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/29126253
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. Gutiérrez-Sacristán A, Guedj R, Korodi G, Stedman J, Furlong LI, Patel CJ, Kohane IS, Avillach P Bioinformatics (Oxford, England) 29267850 Bioinformatics 2018 Apr 15 https://www.ncbi.nlm.nih.gov/pubmed/29267850
Development of an Algorithm to Identify Patients with Physician-Documented Insomnia. Kartoun U, Aggarwal R, Beam AL, Pai JK, Chatterjee AK, Fitzgerald TP, Kohane IS, Shaw SY Scientific reports 29777125 Sci Rep 2018 May 18 https://www.ncbi.nlm.nih.gov/pubmed/29777125
Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression. Wilson A, Zigler CM, Patel CJ, Dominici F Biometrics 29569228 Biometrics 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/29569228
Evaluating surrogate marker information using censored data. Parast L, Cai T, Tian L Statistics in medicine 28088843 Stat Med 2017 May 20 https://www.ncbi.nlm.nih.gov/pubmed/28088843
A general statistical framework for subgroup identification and comparative treatment scoring. Chen S, Tian L, Cai T, Yu M Biometrics 28211943 Biometrics 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/28211943
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Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis. Liao KP, Sparks JA, Hejblum BP, Kuo IH, Cui J, Lahey LJ, Cagan A, Gainer VS, Liu W, Cai TT, Sokolove J, Cai T Arthritis & rheumatology (Hoboken, N.J.) 27792870 Arthritis Rheumatol 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/27792870
Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis. Agniel D, Cai T Biometrics 28407213 Biometrics 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/28407213
Sequence robust association test for familial data. Dai W, Yang M, Wang C, Cai T Biometrics 28273695 Biometrics 2017 Sep https://www.ncbi.nlm.nih.gov/pubmed/28273695
MeSHDD: Literature-based drug-drug similarity for drug repositioning. Brown AS, Patel CJ Journal of the American Medical Informatics Association : JAMIA 27678460 J Am Med Inform Assoc 2017 May 1 https://www.ncbi.nlm.nih.gov/pubmed/27678460
Kernel machine score test for pathway analysis in the presence of semi-competing risks. Neykov M, Hejblum BP, Sinnott JA Statistical methods in medical research 27255336 Stat Methods Med Res 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/27255336
Systematic correlation of environmental exposure and physiological and self-reported behaviour factors with leukocyte telomere length. Patel CJ, Manrai AK, Corona E, Kohane IS International journal of epidemiology 27059547 Int J Epidemiol 2017 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/27059547
Utilizing uncoded consultation notes from electronic medical records for predictive modeling of colorectal cancer. Hoogendoorn M, Szolovits P, Moons LMG, Numans ME Artificial intelligence in medicine 27085847 Artif Intell Med 2016 May https://www.ncbi.nlm.nih.gov/pubmed/27085847
Environment-Wide Association Study of Blood Pressure in the National Health and Nutrition Examination Survey (1999-2012). McGinnis DP, Brownstein JS, Patel CJ Scientific reports 27457472 Sci Rep 2016 Jul 26 https://www.ncbi.nlm.nih.gov/pubmed/27457472
Predicting Social Anxiety Treatment Outcome Based on Therapeutic Email Conversations. Hoogendoorn M, Berger T, Schulz A, Stolz T, Szolovits P IEEE journal of biomedical and health informatics 27542187 IEEE J Biomed Health Inform 2017 Sep https://www.ncbi.nlm.nih.gov/pubmed/27542187
Monitoring Online Discussions About Suicide Among Twitter Users With Schizophrenia: Exploratory Study. Hswen Y, Naslund JA, Brownstein JS, Hawkins JB JMIR mental health 30545811 JMIR Ment Health 2018 Dec 13 https://www.ncbi.nlm.nih.gov/pubmed/30545811
Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms. Can A, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R Stroke 30354989 Stroke 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/30354989
Feature extraction for phenotyping from semantic and knowledge resources. Ning W, Chan S, Beam A, Yu M, Geva A, Liao K, Mullen M, Mandl KD, Kohane I, Cai T, Yu S Journal of biomedical informatics 30738949 J Biomed Inform 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/30738949
Investigation of Geographic and Macrolevel Variations in LGBTQ Patient Experiences: Longitudinal Social Media Analysis. Hswen Y, Zhang A, Sewalk KC, Tuli G, Brownstein JS, Hawkins JB Journal of medical Internet research 33137713 J Med Internet Res 2020 Jul 31 https://www.ncbi.nlm.nih.gov/pubmed/33137713
A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia. Luo Y, Eran A, Palmer N, Avillach P, Levy-Moonshine A, Szolovits P, Kohane IS Nature medicine 32778826 Nat Med 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/32778826
Morphological variables associated with ruptured basilar tip aneurysms. Zhang J, Can A, Lai PMR, Mukundan S Jr, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R Scientific reports 33510194 Sci Rep 2021 Jan 28 https://www.ncbi.nlm.nih.gov/pubmed/33510194
Family history as the strongest predictor of aortic and peripheral aneurysms in patients with intracranial aneurysms. Lai PMR, Akama-Garren E, Can A, Tirado SR, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia 38870642 J Clin Neurosci 2024 Aug https://www.ncbi.nlm.nih.gov/pubmed/38870642
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Balancing Accuracy and Privacy in Federated Queries of Clinical Data Repositories: Algorithm Development and Validation. Yu YW, Weber GM Journal of medical Internet research 33141090 J Med Internet Res 2020 Nov 3 https://www.ncbi.nlm.nih.gov/pubmed/33141090
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Assembler: Efficient Discovery of Spatial Co-evolving Patterns in Massive Geo-sensory Data. Zhang C, Zheng Y, Ma X, Han J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 26705506 KDD 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26705506
Automatic Entity Recognition and Typing from Massive Text Corpora: A Phrase and Network Mining Approach. Ren X, El-Kishky A, Wang C, Han J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 26705508 KDD 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26705508
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Mining Discriminative Patterns to Predict Health Status for Cardiopulmonary Patients. Cheng Q, Shang J, Juen J, Han J, Schatz B ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine 28174760 ACM BCB 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/28174760
Dynamics of Large Multi-View Social Networks: Synergy, Cannibalization and Cross-View Interplay. Shi Y, Kim M, Chatterjee S, Tiwari M, Ghosh S, Rosales R KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 28203486 KDD 2016 Aug https://www.ncbi.nlm.nih.gov/pubmed/28203486
Representing Documents via Latent Keyphrase Inference. Liu J, Ren X, Shang J, Cassidy T, Voss CR, Han J Proceedings of the ... International World-Wide Web Conference. International WWW Conference 28229132 Proc Int World Wide Web Conf 2016 Apr https://www.ncbi.nlm.nih.gov/pubmed/28229132
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NetDecoder: a network biology platform that decodes context-specific biological networks and gene activities. da Rocha EL, Ung CY, McGehee CD, Correia C, Li H Nucleic acids research 26975659 Nucleic Acids Res 2016 Jun 2 https://www.ncbi.nlm.nih.gov/pubmed/26975659
Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease. Liem DA, Murali S, Sigdel D, Shi Y, Wang X, Shen J, Choi H, Caufield JH, Wang W, Ping P, Han J American journal of physiology. Heart and circulatory physiology 29775406 Am J Physiol Heart Circ Physiol 2018 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/29775406
Ketamine and ketamine metabolites as novel estrogen receptor ligands: Induction of cytochrome P450 and AMPA glutamate receptor gene expression. Ho MF, Correia C, Ingle JN, Kaddurah-Daouk R, Wang L, Kaufmann SH, Weinshilboum RM Biochemical pharmacology 29621538 Biochem Pharmacol 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/29621538
SigMat: a classification scheme for gene signature matching. Xiao J, Blatti C, Sinha S Bioinformatics (Oxford, England) 29950002 Bioinformatics 2018 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/29950002
Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. Saul MC, Blatti C, Yang W, Bukhari SA, Shpigler HY, Troy JM, Seward CH, Sloofman L, Chandrasekaran S, Bell AM, Stubbs L, Robinson GE, Zhao SD, Sinha S Genes, brain, and behavior 29968347 Genes Brain Behav 2019 Jan https://www.ncbi.nlm.nih.gov/pubmed/29968347
Genetic analysis of neurodegenerative diseases in a pathology cohort. Blauwendraat C, Pletnikova O, Geiger JT, Murphy NA, Abramzon Y, Rudow G, Mamais A, Sabir MS, Crain B, Ahmed S, Rosenthal LS, Bakker CC, Faghri F, Chia R, Ding J, Dawson TM, Pantelyat A, Albert MS, Nalls MA, Resnick SM, Ferrucci L, Cookson MR, Hillis AE, Troncoso JC, Scholz SW Neurobiology of aging 30528841 Neurobiol Aging 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/30528841
PReP: Path-Based Relevance from a Probabilistic Perspective in Heterogeneous Information Networks. Shi Y, Chan PW, Zhuang H, Gui H, Han J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 30221026 KDD 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/30221026
AspEm: Embedding Learning by Aspects in Heterogeneous Information Networks. Shi Y, Gui H, Zhu Q, Kaplan L, Han J Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining 30221081 Proc SIAM Int Conf Data Min 2018 https://www.ncbi.nlm.nih.gov/pubmed/30221081
TeachEnG: a Teaching Engine for Genomics. Kim M, Kim Y, Qian L, Song JS Bioinformatics (Oxford, England) 29028264 Bioinformatics 2017 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/29028264
Pharmacogenomic Discovery to Function and Mechanism: Breast Cancer as a Case Study. Wang L, Ingle J, Weinshilboum R Clinical pharmacology and therapeutics 29052219 Clin Pharmacol Ther 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/29052219
Automated Phrase Mining from Massive Text Corpora. Shang J, Liu J, Jiang M, Ren X, Voss CR, Han J IEEE transactions on knowledge and data engineering 31105412 IEEE Trans Knowl Data Eng 2018 Oct https://www.ncbi.nlm.nih.gov/pubmed/31105412
Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform. Blatti C 3rd, Emad A, Berry MJ, Gatzke L, Epstein M, Lanier D, Rizal P, Ge J, Liao X, Sobh O, Lambert M, Post CS, Xiao J, Groves P, Epstein AT, Chen X, Srinivasan S, Lehnert E, Kalari KR, Wang L, Weinshilboum RM, Song JS, Jongeneel CV, Han J, Ravaioli U, Sobh N, Bushell CB, Sinha S PLoS biology 31971940 PLoS Biol 2020 Jan https://www.ncbi.nlm.nih.gov/pubmed/31971940
Anastrozole has an Association between Degree of Estrogen Suppression and Outcomes in Early Breast Cancer and is a Ligand for Estrogen Receptor α. Ingle JN, Cairns J, Suman VJ, Shepherd LE, Fasching PA, Hoskin TL, Singh RJ, Desta Z, Kalari KR, Ellis MJ, Goss PE, Chen BE, Volz B, Barman P, Carlson EE, Haddad T, Goetz MP, Goodnature B, Cuellar ME, Walters MA, Correia C, Kaufmann SH, Weinshilboum RM, Wang L Clinical cancer research : an official journal of the American Association for Cancer Research 32098767 Clin Cancer Res 2020 Jun 15 https://www.ncbi.nlm.nih.gov/pubmed/32098767
Heterogeneous Network Representation Learning: A Unified Framework with Survey and Benchmark. Yang C, Xiao Y, Zhang Y, Sun Y, Han J IEEE transactions on knowledge and data engineering 37915376 IEEE Trans Knowl Data Eng 2022 Oct https://www.ncbi.nlm.nih.gov/pubmed/37915376
Superior breast cancer metastasis risk stratification using an epithelial-mesenchymal-amoeboid transition gene signature. Emad A, Ray T, Jensen TW, Parat M, Natrajan R, Sinha S, Ray PS Breast cancer research : BCR 32641077 Breast Cancer Res 2020 Jul 8 https://www.ncbi.nlm.nih.gov/pubmed/32641077
VisAGE: Integrating external knowledge into electronic medical record visualization. Huang EW, Wang S, Zhai C Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 29218916 Pac Symp Biocomput 2018 https://www.ncbi.nlm.nih.gov/pubmed/29218916
SequencEnG: an interactive knowledge base of sequencing techniques. Zhang Y, Manjunath M, Kim Y, Heintz J, Song JS Bioinformatics (Oxford, England) 30202870 Bioinformatics 2019 Apr 15 https://www.ncbi.nlm.nih.gov/pubmed/30202870
Targeted sequencing identifies a missense variant in the BEST3 gene associated with antihypertensive response to hydrochlorothiazide. Singh S, Wang Z, Shahin MH, Langaee TY, Gong Y, Turner ST, Chapman AB, Gums JG, McDonough CW, Bailey KR, Beitelshees AL, Cooper-DeHoff RM, Scherer S, Boerwinkle E, Johnson JA Pharmacogenetics and genomics 30289819 Pharmacogenet Genomics 2018 Nov https://www.ncbi.nlm.nih.gov/pubmed/30289819
Genome-wide association studies of drug response and toxicity: an opportunity for genome medicine. Giacomini KM, Yee SW, Mushiroda T, Weinshilboum RM, Ratain MJ, Kubo M Nature reviews. Drug discovery 27885282 Nat Rev Drug Discov 2017 Jan https://www.ncbi.nlm.nih.gov/pubmed/27885282
Interactive Data Exploration with Smart Drill-Down. Joglekar M, Garcia-Molina H, Parameswaran A Proceedings. International Conference on Data Engineering 28210096 Proc Int Conf Data Eng 2016 May https://www.ncbi.nlm.nih.gov/pubmed/28210096
Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice. Saul MC, Seward CH, Troy JM, Zhang H, Sloofman LG, Lu X, Weisner PA, Caetano-Anolles D, Sun H, Zhao SD, Chandrasekaran S, Sinha S, Stubbs L Genome research 28356321 Genome Res 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28356321
Network-assisted target identification for haploinsufficiency and homozygous profiling screens. Wang S, Peng J PLoS computational biology 28574983 PLoS Comput Biol 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28574983
PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient. Kalari KR, Sinnwell JP, Thompson KJ, Tang X, Carlson EE, Yu J, Vedell PT, Ingle JN, Weinshilboum RM, Boughey JC, Wang L, Goetz MP, Suman V JCO clinical cancer informatics 30652605 JCO Clin Cancer Inform 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/30652605
DPPred: An Effective Prediction Framework with Concise Discriminative Patterns. Shang J, Jiang M, Tong W, Xiao J, Peng J, Han J, Pooled Resource Open-Access ALS Clinical Trials Consortium* IEEE transactions on knowledge and data engineering 30745791 IEEE Trans Knowl Data Eng 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/30745791
Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients. Bhattacharyya S, Ahmed AT, Arnold M, Liu D, Luo C, Zhu H, Mahmoudiandehkordi S, Neavin D, Louie G, Dunlop BW, Frye MA, Wang L, Weinshilboum RM, Krishnan RR, Rush AJ, Kaddurah-Daouk R Translational psychiatry 31273200 Transl Psychiatry 2019 Jul 4 https://www.ncbi.nlm.nih.gov/pubmed/31273200
Single Nucleotide Polymorphisms at a Distance from Aryl Hydrocarbon Receptor (AHR) Binding Sites Influence AHR Ligand-Dependent Gene Expression. Neavin DR, Lee JH, Liu D, Ye Z, Li H, Wang L, Ordog T, Weinshilboum RM Drug metabolism and disposition: the biological fate of chemicals 31292129 Drug Metab Dispos 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/31292129
Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder. Athreya A, Iyer R, Neavin D, Wang L, Weinshilboum R, Kaddurah-Daouk R, Rush J, Frye M, Bobo W IEEE computational intelligence magazine 30467458 IEEE Comput Intell Mag 2018 Aug https://www.ncbi.nlm.nih.gov/pubmed/30467458
Pharmacokinetic-Pharmacodynamic interaction associated with venlafaxine-XR remission in patients with major depressive disorder with history of citalopram / escitalopram treatment failure. Ahmed AT, Biernacka JM, Jenkins G, Rush AJ, Shinozaki G, Veldic M, Kung S, Bobo WV, Hall-Flavin DK, Weinshilboum RM, Wang L, Frye MA Journal of affective disorders 30578947 J Affect Disord 2019 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/30578947
KnowEnG: a knowledge engine for genomics. Sinha S, Song J, Weinshilboum R, Jongeneel V, Han J Journal of the American Medical Informatics Association : JAMIA 26205246 J Am Med Inform Assoc 2015 Nov https://www.ncbi.nlm.nih.gov/pubmed/26205246
Modeling Truth Existence in Truth Discovery. Zhi S, Zhao B, Tong W, Gao J, Yu D, Ji H, Han J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 26705507 KDD 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26705507
Machine Reading for Extraction of Bacteria and Habitat Taxonomies. Kordjamshidi P, Massa W, Provoost T, Moens MF Biomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference) 27077141 Biomed Eng Syst Technol Int Jt Conf BIOSTEC Revis Sel Pap 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/27077141
ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants. Manjunath M, Zhang Y, Zhang S, Roy S, Perez-Pinera P, Song JS Frontiers in genetics 32765587 Front Genet 2020 https://www.ncbi.nlm.nih.gov/pubmed/32765587
Tissue-guided LASSO for prediction of clinical drug response using preclinical samples. Huang EW, Bhope A, Lim J, Sinha S, Emad A PLoS computational biology 31967990 PLoS Comput Biol 2020 Jan https://www.ncbi.nlm.nih.gov/pubmed/31967990
Big Data: Astronomical or Genomical? Stephens ZD, Lee SY, Faghri F, Campbell RH, Zhai C, Efron MJ, Iyer R, Schatz MC, Sinha S, Robinson GE PLoS biology 26151137 PLoS Biol 2015 Jul https://www.ncbi.nlm.nih.gov/pubmed/26151137
An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes. Ghaffari S, Hanson C, Schmidt RE, Bouchonville KJ, Offer SM, Sinha S Genome biology 33413550 Genome Biol 2021 Jan 7 https://www.ncbi.nlm.nih.gov/pubmed/33413550
Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study. Emad A, Sinha S NPJ systems biology and applications 33558504 NPJ Syst Biol Appl 2021 Feb 8 https://www.ncbi.nlm.nih.gov/pubmed/33558504
Interaction Between SNP Genotype and Efficacy of Anastrozole and Exemestane in Early-Stage Breast Cancer. Cairns J, Kalari KR, Ingle JN, Shepherd LE, Ellis MJ, Goss PE, Barman P, Carlson EE, Goodnature B, Goetz MP, Weinshilboum RM, Gao H, Wang L Clinical pharmacology and therapeutics 34048027 Clin Pharmacol Ther 2021 Oct https://www.ncbi.nlm.nih.gov/pubmed/34048027
Computational discovery of transcription factors associated with drug response. Hanson C, Cairns J, Wang L, Sinha S The pharmacogenomics journal 26503816 Pharmacogenomics J 2016 Nov https://www.ncbi.nlm.nih.gov/pubmed/26503816
On the Discovery of Evolving Truth. Li Y, Li Q, Gao J, Su L, Zhao B, Fan W, Han J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 26705502 KDD 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26705502
Incorporating World Knowledge to Document Clustering via Heterogeneous Information Networks. Wang C, Song Y, El-Kishky A, Roth D, Zhang M, Han J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 26705504 KDD 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26705504
Robust Classification of Information Networks by Consistent Graph Learning. Zhi S, Han J, Gu Q Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference) 26705541 Mach Learn Knowl Discov Databases 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/26705541
Collaborative Data Analytics with DataHub. Bhardwaj A, Karger D, Subramanyam H, Deshpande A, Madden S, Wu E, Elmore A, Parameswaran A, Zhang R Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases 26844007 Proceedings VLDB Endowment 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26844007
Smart Drill-Down: A New Data Exploration Operator. Joglekar M, Garcia-Molina H, Parameswaran A Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases 26844008 Proceedings VLDB Endowment 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26844008
Surpassing Humans and Computers with JellyBean: Crowd-Vision-Hybrid Counting Algorithms. Sarma AD, Jain A, Nandi A, Parameswaran A, Widom J Proceedings of the ... AAAI Conference on Human Computation and Crowdsourcing 26844304 Proc AAAI Conf Hum Comput Crowdsourc 2015 Nov https://www.ncbi.nlm.nih.gov/pubmed/26844304
Rapid Sampling for Visualizations with Ordering Guarantees. Kim A, Blais E, Parameswaran A, Indyk P, Madden S, Rubinfeld R Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases 26779380 Proceedings VLDB Endowment 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/26779380
DataSpread: Unifying Databases and Spreadsheets. Bendre M, Sun B, Zhang D, Zhou X, Chang KC, Parameswaran A Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases 26900487 Proceedings VLDB Endowment 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26900487
Mining Quality Phrases from Massive Text Corpora. Liu J, Shang J, Wang C, Ren X, Han J Proceedings. ACM-SIGMOD International Conference on Management of Data 26705375 Proc ACM SIGMOD Int Conf Manag Data 2015 May-Jun https://www.ncbi.nlm.nih.gov/pubmed/26705375
TOPTRAC: Topical Trajectory Pattern Mining. Kim Y, Han J, Yuan C KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 26709365 KDD 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26709365
Pharmacogenomics: Precision Medicine and Drug Response. Weinshilboum RM, Wang L Mayo Clinic proceedings 29101939 Mayo Clin Proc 2017 Nov https://www.ncbi.nlm.nih.gov/pubmed/29101939
Benefits of and Barriers to Pharmacogenomics-Guided Treatment for Major Depressive Disorder. Ahmed AT, Weinshilboum R, Frye MA Clinical pharmacology and therapeutics 29388201 Clin Pharmacol Ther 2018 May https://www.ncbi.nlm.nih.gov/pubmed/29388201
Optimizing Open-Ended Crowdsourcing: The Next Frontier in Crowdsourced Data Management. Parameswaran A, Sarma AD, Venkataraman V Bulletin of the Technical Committee on Data Engineering 28951893 Bull Tech Comm Data Eng 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/28951893
Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation. Hanson C, Cairns J, Wang L, Sinha S Genome research 29898900 Genome Res 2018 Aug https://www.ncbi.nlm.nih.gov/pubmed/29898900
Framing Electronic Medical Records as Polylingual Documents in Query Expansion. Huang EW, Wang S, Lee DJ, Zhang R, Liu B, Zhou X, Zhai C AMIA ... Annual Symposium proceedings. AMIA Symposium 29854161 AMIA Annu Symp Proc 2017 https://www.ncbi.nlm.nih.gov/pubmed/29854161
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Liberal Entity Extraction: Rapid Construction of Fine-Grained Entity Typing Systems. Huang L, May J, Pan X, Ji H, Ren X, Han J, Zhao L, Hendler JA Big data 28328252 Big Data 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/28328252
Data-analysis strategies for image-based cell profiling. Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HS, Kraus O, Wawer M, Paavolainen L, Herrmann MD, Rohban M, Hung J, Hennig H, Concannon J, Smith I, Clemons PA, Singh S, Rees P, Horvath P, Linington RG, Carpenter AE Nature methods 28858338 Nat Methods 2017 Aug 31 https://www.ncbi.nlm.nih.gov/pubmed/28858338
Proteomics Research in Cardiovascular Medicine and Biomarker Discovery. Lam MP, Ping P, Murphy E Journal of the American College of Cardiology 28007144 J Am Coll Cardiol 2016 Dec 27 https://www.ncbi.nlm.nih.gov/pubmed/28007144
Transgenic overexpression of macrophage matrix metalloproteinase-9 exacerbates age-related cardiac hypertrophy, vessel rarefaction, inflammation, and fibrosis. Toba H, Cannon PL, Yabluchanskiy A, Iyer RP, D'Armiento J, Lindsey ML American journal of physiology. Heart and circulatory physiology 28011588 Am J Physiol Heart Circ Physiol 2017 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/28011588
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WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM Database : the journal of biological databases and curation 28365742 Database (Oxford) 2017 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/28365742
Crowdsourcing in biomedicine: challenges and opportunities. Khare R, Good BM, Leaman R, Su AI, Lu Z Briefings in bioinformatics 25888696 Brief Bioinform 2016 Jan https://www.ncbi.nlm.nih.gov/pubmed/25888696
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3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification. Kalinin AA, Allyn-Feuer A, Ade A, Fon GV, Meixner W, Dilworth D, Husain SS, de Wet JR, Higgins GA, Zheng G, Creekmore A, Wiley JW, Verdone JE, Veltri RW, Pienta KJ, Coffey DS, Athey BD, Dinov ID Scientific reports 30209281 Sci Rep 2018 Sep 12 https://www.ncbi.nlm.nih.gov/pubmed/30209281
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Expanding the Use of Spectral Libraries in Proteomics. Deutsch EW, Perez-Riverol Y, Chalkley RJ, Wilhelm M, Tate S, Sachsenberg T, Walzer M, Käll L, Delanghe B, Böcker S, Schymanski EL, Wilmes P, Dorfer V, Kuster B, Volders PJ, Jehmlich N, Vissers JPC, Wolan DW, Wang AY, Mendoza L, Shofstahl J, Dowsey AW, Griss J, Salek RM, Neumann S, Binz PA, Lam H, Vizcaíno JA, Bandeira N, Röst H Journal of proteome research 30270626 J Proteome Res 2018 Dec 7 https://www.ncbi.nlm.nih.gov/pubmed/30270626
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Big data sharing and analysis to advance research in post-traumatic epilepsy. Duncan D, Vespa P, Pitkänen A, Braimah A, Lapinlampi N, Toga AW Neurobiology of disease 29864492 Neurobiol Dis 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/29864492
Neuroanatomical morphometric characterization of sex differences in youth using statistical learning. Sepehrband F, Lynch KM, Cabeen RP, Gonzalez-Zacarias C, Zhao L, D'Arcy M, Kesselman C, Herting MM, Dinov ID, Toga AW, Clark KA NeuroImage 29414494 Neuroimage 2018 May 15 https://www.ncbi.nlm.nih.gov/pubmed/29414494
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Volume and Value of Big Healthcare Data. Dinov ID Journal of medical statistics and informatics 26998309 J Med Stat Inform 2016 https://www.ncbi.nlm.nih.gov/pubmed/26998309
Neuroimaging PheWAS (Phenome-Wide Association Study): A Free Cloud-Computing Platform for Big-Data, Brain-Wide Imaging Association Studies. Zhao L, Batta I, Matloff W, O'Driscoll C, Hobel S, Toga AW Neuroinformatics 32822005 Neuroinformatics 2021 Apr https://www.ncbi.nlm.nih.gov/pubmed/32822005
Magnitude and timing of major white matter tract maturation from infancy through adolescence with NODDI. Lynch KM, Cabeen RP, Toga AW, Clark KA NeuroImage 32092432 Neuroimage 2020 May 15 https://www.ncbi.nlm.nih.gov/pubmed/32092432
From a deep learning model back to the brain-Identifying regional predictors and their relation to aging. Levakov G, Rosenthal G, Shelef I, Raviv TR, Avidan G Human brain mapping 32320123 Hum Brain Mapp 2020 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/32320123
The Alzheimer's Disease Neuroimaging Initiative informatics core: A decade in review. Toga AW, Crawford KL Alzheimer's & dementia : the journal of the Alzheimer's Association 26194316 Alzheimers Dement 2015 Jul https://www.ncbi.nlm.nih.gov/pubmed/26194316
Structural Brain Changes in Early-Onset Alzheimer's Disease Subjects Using the LONI Pipeline Environment. Moon SW, Dinov ID, Hobel S, Zamanyan A, Choi YC, Shi R, Thompson PM, Toga AW, Alzheimer's Disease Neuroimaging Initiative Journal of neuroimaging : official journal of the American Society of Neuroimaging 25940587 J Neuroimaging 2015 Sep-Oct https://www.ncbi.nlm.nih.gov/pubmed/25940587
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. Deutsch EW, Lane L, Overall CM, Bandeira N, Baker MS, Pineau C, Moritz RL, Corrales F, Orchard S, Van Eyk JE, Paik YK, Weintraub ST, Vandenbrouck Y, Omenn GS Journal of proteome research 31599596 J Proteome Res 2019 Dec 6 https://www.ncbi.nlm.nih.gov/pubmed/31599596
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics. Deutsch EW, Mendoza L, Shteynberg D, Slagel J, Sun Z, Moritz RL Proteomics. Clinical applications 25631240 Proteomics Clin Appl 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/25631240
Sharing the wealth: Neuroimaging data repositories. Eickhoff S, Nichols TE, Van Horn JD, Turner JA NeuroImage 26574120 Neuroimage 2016 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/26574120
MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI. Fan Q, Witzel T, Nummenmaa A, Van Dijk KRA, Van Horn JD, Drews MK, Somerville LH, Sheridan MA, Santillana RM, Snyder J, Hedden T, Shaw EE, Hollinshead MO, Renvall V, Zanzonico R, Keil B, Cauley S, Polimeni JR, Tisdall D, Buckner RL, Wedeen VJ, Wald LL, Toga AW, Rosen BR NeuroImage 26364861 Neuroimage 2016 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/26364861
DataSifterText: Partially Synthetic Text Generation for Sensitive Clinical Notes. Zhou N, Wu Q, Wu Z, Marino S, Dinov ID Journal of medical systems 36380246 J Med Syst 2022 Nov 16 https://www.ncbi.nlm.nih.gov/pubmed/36380246
Mapping Complex Brain Torque Components and Their Genetic Architecture and Phenomic Associations in 24,112 Individuals. Zhao L, Matloff W, Shi Y, Cabeen RP, Toga AW Biological psychiatry 35027165 Biol Psychiatry 2022 Apr 15 https://www.ncbi.nlm.nih.gov/pubmed/35027165
A data value metric for quantifying information content and utility. Noshad M, Choi J, Sun Y, Hero A 3rd, Dinov ID Journal of big data 34777945 J Big Data 2021 https://www.ncbi.nlm.nih.gov/pubmed/34777945
Classifying migraine using PET compressive big data analytics of brain's μ-opioid and D2/D3 dopamine neurotransmission. Marino S, Jassar H, Kim DJ, Lim M, Nascimento TD, Dinov ID, Koeppe RA, DaSilva AF Frontiers in pharmacology 37383727 Front Pharmacol 2023 https://www.ncbi.nlm.nih.gov/pubmed/37383727
Processing shotgun proteomics data on the Amazon cloud with the trans-proteomic pipeline. Slagel J, Mendoza L, Shteynberg D, Deutsch EW, Moritz RL Molecular & cellular proteomics : MCP 25418363 Mol Cell Proteomics 2015 Feb https://www.ncbi.nlm.nih.gov/pubmed/25418363
A comprehensive Candida albicans PeptideAtlas build enables deep proteome coverage. Vialas V, Sun Z, Reales-Calderón JA, Hernáez ML, Casas V, Carrascal M, Abián J, Monteoliva L, Deutsch EW, Moritz RL, Gil C Journal of proteomics 26493587 J Proteomics 2016 Jan 10 https://www.ncbi.nlm.nih.gov/pubmed/26493587
The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine. Hesselager MO, Codrea MC, Sun Z, Deutsch EW, Bennike TB, Stensballe A, Bundgaard L, Moritz RL, Bendixen E Proteomics 26699206 Proteomics 2016 Feb https://www.ncbi.nlm.nih.gov/pubmed/26699206
The Global Alzheimer's Association Interactive Network. Toga AW, Neu SC, Bhatt P, Crawford KL, Ashish N Alzheimer's & dementia : the journal of the Alzheimer's Association 26318022 Alzheimers Dement 2016 Jan https://www.ncbi.nlm.nih.gov/pubmed/26318022
Data publication with the structural biology data grid supports live analysis. Meyer PA, Socias S, Key J, Ransey E, Tjon EC, Buschiazzo A, Lei M, Botka C, Withrow J, Neau D, Rajashankar K, Anderson KS, Baxter RH, Blacklow SC, Boggon TJ, Bonvin AM, Borek D, Brett TJ, Caflisch A, Chang CI, Chazin WJ, Corbett KD, Cosgrove MS, Crosson S, Dhe-Paganon S, Di Cera E, Drennan CL, Eck MJ, Eichman BF, Fan QR, Ferré-D'Amaré AR, Fromme JC, Garcia KC, Gaudet R, Gong P, Harrison SC, Heldwein EE, Jia Z, Keenan RJ, Kruse AC, Kvansakul M, McLellan JS, Modis Y, Nam Y, Otwinowski Z, Pai EF, Pereira PJ, Petosa C, Raman CS, Rapoport TA, Roll-Mecak A, Rosen MK, Rudenko G, Schlessinger J, Schwartz TU, Shamoo Y, Sondermann H, Tao YJ, Tolia NH, Tsodikov OV, Westover KD, Wu H, Foster I, Fraser JS, Maia FR, Gonen T, Kirchhausen T, Diederichs K, Crosas M, Sliz P Nature communications 26947396 Nat Commun 2016 Mar 7 https://www.ncbi.nlm.nih.gov/pubmed/26947396
Complete hazard ranking to analyze right-censored data: An ALS survival study. Huang Z, Zhang H, Boss J, Goutman SA, Mukherjee B, Dinov ID, Guan Y, Pooled Resource Open-Access ALS Clinical Trials Consortium PLoS computational biology 29253881 PLoS Comput Biol 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/29253881
Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification. Omenn GS, Lane L, Lundberg EK, Beavis RC, Nesvizhskii AI, Deutsch EW Journal of proteome research 26155816 J Proteome Res 2015 Sep 4 https://www.ncbi.nlm.nih.gov/pubmed/26155816
State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet. Deutsch EW, Sun Z, Campbell D, Kusebauch U, Chu CS, Mendoza L, Shteynberg D, Omenn GS, Moritz RL Journal of proteome research 26139527 J Proteome Res 2015 Sep 4 https://www.ncbi.nlm.nih.gov/pubmed/26139527
Sharing data in the global alzheimer's association interactive network. Neu SC, Crawford KL, Toga AW NeuroImage 26049147 Neuroimage 2016 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/26049147
Gene interactions and structural brain change in early-onset Alzheimer's disease subjects using the pipeline environment. Moon SW, Dinov ID, Zamanyan A, Shi R, Genco A, Hobel S, Thompson PM, Toga AW, Alzheimer's Disease Neuroimaging Initiative (ADNI) Psychiatry investigation 25670955 Psychiatry Investig 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/25670955
Subcortical brain alterations in major depressive disorder: findings from the ENIGMA Major Depressive Disorder working group. Schmaal L, Veltman DJ, van Erp TG, Sämann PG, Frodl T, Jahanshad N, Loehrer E, Tiemeier H, Hofman A, Niessen WJ, Vernooij MW, Ikram MA, Wittfeld K, Grabe HJ, Block A, Hegenscheid K, Völzke H, Hoehn D, Czisch M, Lagopoulos J, Hatton SN, Hickie IB, Goya-Maldonado R, Krämer B, Gruber O, Couvy-Duchesne B, Rentería ME, Strike LT, Mills NT, de Zubicaray GI, McMahon KL, Medland SE, Martin NG, Gillespie NA, Wright MJ, Hall GB, MacQueen GM, Frey EM, Carballedo A, van Velzen LS, van Tol MJ, van der Wee NJ, Veer IM, Walter H, Schnell K, Schramm E, Normann C, Schoepf D, Konrad C, Zurowski B, Nickson T, McIntosh AM, Papmeyer M, Whalley HC, Sussmann JE, Godlewska BR, Cowen PJ, Fischer FH, Rose M, Penninx BW, Thompson PM, Hibar DP Molecular psychiatry 26122586 Mol Psychiatry 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/26122586
Connectome imaging for mapping human brain pathways. Shi Y, Toga AW Molecular psychiatry 28461700 Mol Psychiatry 2017 Sep https://www.ncbi.nlm.nih.gov/pubmed/28461700
Brainhack: a collaborative workshop for the open neuroscience community. Cameron Craddock R, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, J Gerber A, S Ghosh S, J Grabowski T, Hill S, Sólon Heinsfeld A, Matthew Hutchison R, Kundu P, R Laird A, Liew SL, J Lurie D, G McLaren D, Meneguzzi F, Mennes M, Mesmoudi S, O'Connor D, H Pasaye E, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, S Saad Z, Shi Y, C Strother S, Toro R, Q Uddin L, D Van Horn J, W Van Meter J, C Welsh R, Xu T GigaScience 27042293 Gigascience 2016 https://www.ncbi.nlm.nih.gov/pubmed/27042293
Comparison of genomic data via statistical distribution. Amiri S, Dinov ID Journal of theoretical biology 27460589 J Theor Biol 2016 Oct 21 https://www.ncbi.nlm.nih.gov/pubmed/27460589
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. Readhead B, Haure-Mirande JV, Funk CC, Richards MA, Shannon P, Haroutunian V, Sano M, Liang WS, Beckmann ND, Price ND, Reiman EM, Schadt EE, Ehrlich ME, Gandy S, Dudley JT Neuron 29937276 Neuron 2018 Jul 11 https://www.ncbi.nlm.nih.gov/pubmed/29937276
Motor neuron loss and neuroinflammation in a model of α-synuclein-induced neurodegeneration. Sorrentino ZA, Xia Y, Funk C, Riffe CJ, Rutherford NJ, Ceballos Diaz C, Sacino AN, Price ND, Golde TE, Giasson BI, Chakrabarty P Neurobiology of disease 30195075 Neurobiol Dis 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/30195075
Association of relative brain age with tobacco smoking, alcohol consumption, and genetic variants. Ning K, Zhao L, Matloff W, Sun F, Toga AW Scientific reports 32001736 Sci Rep 2020 Jan 30 https://www.ncbi.nlm.nih.gov/pubmed/32001736
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0). Mi H, Muruganujan A, Huang X, Ebert D, Mills C, Guo X, Thomas PD Nature protocols 30804569 Nat Protoc 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/30804569
Disruption and Compensation of Sulcation-based Covariance Networks in Neonatal Brain Growth after Perinatal Injury. Kim SY, Liu M, Hong SJ, Toga AW, Barkovich AJ, Xu D, Kim H Cerebral cortex (New York, N.Y. : 1991) 32656563 Cereb Cortex 2020 Nov 3 https://www.ncbi.nlm.nih.gov/pubmed/32656563
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types. Funk CC, Casella AM, Jung S, Richards MA, Rodriguez A, Shannon P, Donovan-Maiye R, Heavner B, Chard K, Xiao Y, Glusman G, Ertekin-Taner N, Golde TE, Toga A, Hood L, Van Horn JD, Kesselman C, Foster I, Madduri R, Price ND, Ament SA Cell reports 32814038 Cell Rep 2020 Aug 18 https://www.ncbi.nlm.nih.gov/pubmed/32814038
Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging. Ning K, Duffy BA, Franklin M, Matloff W, Zhao L, Arzouni N, Sun F, Toga AW Neurobiology of aging 34098431 Neurobiol Aging 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/34098431
Altered cerebrocerebellar functional connectivity in patients with obstructive sleep apnea and its association with cognitive function. Park HR, Cha J, Joo EY, Kim H Sleep 34432059 Sleep 2022 Jan 11 https://www.ncbi.nlm.nih.gov/pubmed/34432059
Predicting brain age based on sleep EEG and DenseNet. Yook S, Miao Y, Park C, Park HR, Kim J, Lim DC, Yeon Joo E, Kim H Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference 34891282 Annu Int Conf IEEE Eng Med Biol Soc 2021 Nov https://www.ncbi.nlm.nih.gov/pubmed/34891282
Morphological Development Trajectory and Structural Covariance Network of the Human Fetal Cortical Plate during the Early Second Trimester. Xu F, Liu M, Kim SY, Ge X, Zhang Z, Tang Y, Lin X, Toga AW, Liu S, Kim H Cerebral cortex (New York, N.Y. : 1991) 34017979 Cereb Cortex 2021 Aug 26 https://www.ncbi.nlm.nih.gov/pubmed/34017979
Altered regional cerebral blood flow in obstructive sleep apnea is associated with sleep fragmentation and oxygen desaturation. Yan L, Park HR, Kezirian EJ, Yook S, Kim JH, Joo EY, Kim H Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 33906511 J Cereb Blood Flow Metab 2021 Oct https://www.ncbi.nlm.nih.gov/pubmed/33906511
The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services. Avesani P, McPherson B, Hayashi S, Caiafa CF, Henschel R, Garyfallidis E, Kitchell L, Bullock D, Patterson A, Olivetti E, Sporns O, Saykin AJ, Wang L, Dinov I, Hancock D, Caron B, Qian Y, Pestilli F Scientific data 31123325 Sci Data 2019 May 23 https://www.ncbi.nlm.nih.gov/pubmed/31123325
Imputation Strategy for Reliable Regional MRI Morphological Measurements. Sta Cruz S, Dinov ID, Herting MM, González-Zacarías C, Kim H, Toga AW, Sepehrband F Neuroinformatics 31054076 Neuroinformatics 2020 Jan https://www.ncbi.nlm.nih.gov/pubmed/31054076
Flipping the grant application review process. Dinov ID Studies in higher education 36196072 Stud High Educ 2020 https://www.ncbi.nlm.nih.gov/pubmed/36196072
Probability Distributome: A Web Computational Infrastructure for Exploring the Properties, Interrelations, and Applications of Probability Distributions. Dinov ID, Siegrist K, Pearl DK, Kalinin A, Christou N Computational statistics 27158191 Comput Stat 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/27158191
Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data. Dinov ID GigaScience 26918190 Gigascience 2016 https://www.ncbi.nlm.nih.gov/pubmed/26918190
Sharing big biomedical data. Toga AW, Dinov ID Journal of big data 26929900 J Big Data 2015 https://www.ncbi.nlm.nih.gov/pubmed/26929900
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. Deutsch EW, Orchard S, Binz PA, Bittremieux W, Eisenacher M, Hermjakob H, Kawano S, Lam H, Mayer G, Menschaert G, Perez-Riverol Y, Salek RM, Tabb DL, Tenzer S, Vizcaíno JA, Walzer M, Jones AR Journal of proteome research 28849660 J Proteome Res 2017 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/28849660
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. Omenn GS, Lane L, Lundberg EK, Overall CM, Deutsch EW Journal of proteome research 28853897 J Proteome Res 2017 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/28853897
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. Vizcaíno JA, Mayer G, Perkins S, Barsnes H, Vaudel M, Perez-Riverol Y, Ternent T, Uszkoreit J, Eisenacher M, Fischer L, Rappsilber J, Netz E, Walzer M, Kohlbacher O, Leitner A, Chalkley RJ, Ghali F, Martínez-Bartolomé S, Deutsch EW, Jones AR Molecular & cellular proteomics : MCP 28515314 Mol Cell Proteomics 2017 Jul https://www.ncbi.nlm.nih.gov/pubmed/28515314
Topographic Regularity for Tract Filtering in Brain Connectivity. Wang J, Aydogan DB, Varma R, Toga AW, Shi Y Information processing in medical imaging : proceedings of the ... conference 28943732 Inf Process Med Imaging 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28943732
The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays. Schwenk JM, Omenn GS, Sun Z, Campbell DS, Baker MS, Overall CM, Aebersold R, Moritz RL, Deutsch EW Journal of proteome research 28938075 J Proteome Res 2017 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/28938075
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. Omenn GS, Lane L, Lundberg EK, Beavis RC, Overall CM, Deutsch EW Journal of proteome research 27487407 J Proteome Res 2016 Nov 4 https://www.ncbi.nlm.nih.gov/pubmed/27487407
Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations. Dinov ID, Heavner B, Tang M, Glusman G, Chard K, Darcy M, Madduri R, Pa J, Spino C, Kesselman C, Foster I, Deutsch EW, Price ND, Van Horn JD, Ames J, Clark K, Hood L, Hampstead BM, Dauer W, Toga AW PloS one 27494614 PLoS One 2016 https://www.ncbi.nlm.nih.gov/pubmed/27494614
Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging: Structural connectivity of the human brain. Li J, Shi Y, Toga AW IEEE signal processing magazine 27212872 IEEE Signal Process Mag 2016 May https://www.ncbi.nlm.nih.gov/pubmed/27212872
Ultrafast Comparison of Personal Genomes via Precomputed Genome Fingerprints. Glusman G, Mauldin DE, Hood LE, Robinson M Frontiers in genetics 29018478 Front Genet 2017 https://www.ncbi.nlm.nih.gov/pubmed/29018478
Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease. Gao C, Sun H, Wang T, Tang M, Bohnen NI, Müller MLTM, Herman T, Giladi N, Kalinin A, Spino C, Dauer W, Hausdorff JM, Dinov ID Scientific reports 29740058 Sci Rep 2018 May 8 https://www.ncbi.nlm.nih.gov/pubmed/29740058
Deep learning in pharmacogenomics: from gene regulation to patient stratification. Kalinin AA, Higgins GA, Reamaroon N, Soroushmehr S, Allyn-Feuer A, Dinov ID, Najarian K, Athey BD Pharmacogenomics 29697304 Pharmacogenomics 2018 May https://www.ncbi.nlm.nih.gov/pubmed/29697304
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. Menschaert G, Wang X, Jones AR, Ghali F, Fenyö D, Olexiouk V, Zhang B, Deutsch EW, Ternent T, Vizcaíno JA Genome biology 29386051 Genome Biol 2018 Jan 31 https://www.ncbi.nlm.nih.gov/pubmed/29386051
SOCR data dashboard: an integrated big data archive mashing medicare, labor, census and econometric information. Husain SS, Kalinin A, Truong A, Dinov ID Journal of big data 26236573 J Big Data 2015 https://www.ncbi.nlm.nih.gov/pubmed/26236573
Development of the human fetal hippocampal formation during early second trimester. Ge X, Shi Y, Li J, Zhang Z, Lin X, Zhan J, Ge H, Xu J, Yu Q, Leng Y, Teng G, Feng L, Meng H, Tang Y, Zang F, Toga AW, Liu S NeuroImage 26123377 Neuroimage 2015 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/26123377
Structural Neuroimaging Genetics Interactions in Alzheimer's Disease. Moon SW, Dinov ID, Kim J, Zamanyan A, Hobel S, Thompson PM, Toga AW Journal of Alzheimer's disease : JAD 26444770 J Alzheimers Dis 2015 https://www.ncbi.nlm.nih.gov/pubmed/26444770
The GAAIN Entity Mapper: An Active-Learning System for Medical Data Mapping. Ashish N, Dewan P, Toga AW Frontiers in neuroinformatics 26793094 Front Neuroinform 2015 https://www.ncbi.nlm.nih.gov/pubmed/26793094
A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry. Swearingen KE, Eng JK, Shteynberg D, Vigdorovich V, Springer TA, Mendoza L, Sather DN, Deutsch EW, Kappe SHI, Moritz RL Journal of proteome research 30523691 J Proteome Res 2019 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/30523691
Analytic Tools for Post-traumatic Epileptogenesis Biomarker Search in Multimodal Dataset of an Animal Model and Human Patients. Duncan D, Barisano G, Cabeen R, Sepehrband F, Garner R, Braimah A, Vespa P, Pitkänen A, Law M, Toga AW Frontiers in neuroinformatics 30618695 Front Neuroinform 2018 https://www.ncbi.nlm.nih.gov/pubmed/30618695
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. Shteynberg DD, Deutsch EW, Campbell DS, Hoopmann MR, Kusebauch U, Lee D, Mendoza L, Midha MK, Sun Z, Whetton AD, Moritz RL Journal of proteome research 31290668 J Proteome Res 2019 Dec 6 https://www.ncbi.nlm.nih.gov/pubmed/31290668
Modernizing the Methods and Analytics Curricula for Health Science Doctoral Programs. Dinov ID Frontiers in public health 32117857 Front Public Health 2020 https://www.ncbi.nlm.nih.gov/pubmed/32117857
Using Virtual Reality to Improve Performance and User Experience in Manual Correction of MRI Segmentation Errors by Non-experts. Duncan D, Garner R, Zrantchev I, Ard T, Newman B, Saslow A, Wanserski E, Toga AW Journal of digital imaging 30030766 J Digit Imaging 2019 Feb https://www.ncbi.nlm.nih.gov/pubmed/30030766
Structure and Protein Interaction-Based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17. Zhang C, Wei X, Omenn GS, Zhang Y Journal of proteome research 30265558 J Proteome Res 2018 Dec 7 https://www.ncbi.nlm.nih.gov/pubmed/30265558
Hippocampal Shape Maturation in Childhood and Adolescence. Lynch KM, Shi Y, Toga AW, Clark KA, Pediatric Imaging, Neurocognition and Genetics Study Cerebral cortex (New York, N.Y. : 1991) 30272143 Cereb Cortex 2019 Aug 14 https://www.ncbi.nlm.nih.gov/pubmed/30272143
Interaction effect of alcohol consumption and Alzheimer disease polygenic risk score on the brain cortical thickness of cognitively normal subjects. Matloff WJ, Zhao L, Ning K, Conti DV, Toga AW Alcohol (Fayetteville, N.Y.) 31734309 Alcohol 2020 Jun https://www.ncbi.nlm.nih.gov/pubmed/31734309
LEARNING TO SYNTHESIZE CORTICAL MORPHOLOGICAL CHANGES USING GRAPH CONDITIONAL VARIATIONAL AUTOENCODER. Chai Y, Liu M, Duffy BA, Kim H Proceedings. IEEE International Symposium on Biomedical Imaging 35330877 Proc IEEE Int Symp Biomed Imaging 2021 Apr https://www.ncbi.nlm.nih.gov/pubmed/35330877
Compressive Big Data Analytics: An ensemble meta-algorithm for high-dimensional multisource datasets. Marino S, Zhao Y, Zhou N, Zhou Y, Toga AW, Zhao L, Jian Y, Yang Y, Chen Y, Wu Q, Wild J, Cummings B, Dinov ID PloS one 32857775 PLoS One 2020 https://www.ncbi.nlm.nih.gov/pubmed/32857775
Structural Brain Differences in the Alzheimer's Disease Continuum: Insights Into the Heterogeneity From a Large Multisite Neuroimaging Consortium. Evans TE, Vilor-Tejedor N, Operto G, Falcon C, Hofman A, Ibáñez A, Seshadari S, Tan LCS, Weiner M, Alladi S, Anazodo U, Gispert JD, Alzheimer’s Disease Neuroimaging Initiative, Australian Imaging Biomarkers and Lifestyle flagship study of ageing, Adams HHH Biological psychiatry. Cognitive neuroscience and neuroimaging 39084525 Biol Psychiatry Cogn Neurosci Neuroimaging 2025 Oct https://www.ncbi.nlm.nih.gov/pubmed/39084525
Different effects of cardiometabolic syndrome on brain age in relation to gender and ethnicity. Kang SH, Liu M, Park G, Kim SY, Lee H, Matloff W, Zhao L, Yoo H, Kim JP, Jang H, Kim HJ, Jahanshad N, Oh K, Koh SB, Na DL, Gallacher J, Gottesman RF, Seo SW, Kim H Alzheimer's research & therapy 36998058 Alzheimers Res Ther 2023 Mar 30 https://www.ncbi.nlm.nih.gov/pubmed/36998058
White matter hyperintensities segmentation using the ensemble U-Net with multi-scale highlighting foregrounds. Park G, Hong J, Duffy BA, Lee JM, Kim H NeuroImage 33957235 Neuroimage 2021 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/33957235
Three-dimensional self-attention conditional GAN with spectral normalization for multimodal neuroimaging synthesis. Lan H, Alzheimer Disease Neuroimaging Initiative, Toga AW, Sepehrband F Magnetic resonance in medicine 33961321 Magn Reson Med 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/33961321
Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions. Duffy BA, Zhao L, Sepehrband F, Min J, Wang DJ, Shi Y, Toga AW, Kim H, Alzheimer's Disease Neuroimaging Initiative NeuroImage 33460797 Neuroimage 2021 Apr 15 https://www.ncbi.nlm.nih.gov/pubmed/33460797
International Multicenter Analysis of Brain Structure Across Clinical Stages of Parkinson's Disease. Laansma MA, Bright JK, Al-Bachari S, Anderson TJ, Ard T, Assogna F, Baquero KA, Berendse HW, Blair J, Cendes F, Dalrymple-Alford JC, de Bie RMA, Debove I, Dirkx MF, Druzgal J, Emsley HCA, Garraux G, Guimarães RP, Gutman BA, Helmich RC, Klein JC, Mackay CE, McMillan CT, Melzer TR, Parkes LM, Piras F, Pitcher TL, Poston KL, Rango M, Ribeiro LF, Rocha CS, Rummel C, Santos LSR, Schmidt R, Schwingenschuh P, Spalletta G, Squarcina L, van den Heuvel OA, Vriend C, Wang JJ, Weintraub D, Wiest R, Yasuda CL, Jahanshad N, Thompson PM, van der Werf YD, ENIGMA-Parkinson's Study Movement disorders : official journal of the Movement Disorder Society 34288137 Mov Disord 2021 Nov https://www.ncbi.nlm.nih.gov/pubmed/34288137
The mobilize center: an NIH big data to knowledge center to advance human movement research and improve mobility. Ku JP, Hicks JL, Hastie T, Leskovec J, Ré C, Delp SL Journal of the American Medical Informatics Association : JAMIA 26272077 J Am Med Inform Assoc 2015 Nov https://www.ncbi.nlm.nih.gov/pubmed/26272077
Objective measurement of free-living physical activity (performance) in lumbar spinal stenosis: are physical activity guidelines being met? Norden J, Smuck M, Sinha A, Hu R, Tomkins-Lane C The spine journal : official journal of the North American Spine Society 27793759 Spine J 2017 Jan https://www.ncbi.nlm.nih.gov/pubmed/27793759
Caffe con Troll: Shallow Ideas to Speed Up Deep Learning. Hadjis S, Abuzaid F, Zhang C, Ré C Proceedings of the Fourth Workshop on Data analytics at sCale (DanaC 2015) : May 31st, 2015, Melbourne, Australia. Workshop on Data Analytics in the Cloud (4th : 2015 : Melbourne, Vic.) 27314106 Proc Fourth Workshop Data Anal Scale Danac 2015 (2015) 2015 May-Jun https://www.ncbi.nlm.nih.gov/pubmed/27314106
Effects of Three Motivationally Targeted Mobile Device Applications on Initial Physical Activity and Sedentary Behavior Change in Midlife and Older Adults: A Randomized Trial. King AC, Hekler EB, Grieco LA, Winter SJ, Sheats JL, Buman MP, Banerjee B, Robinson TN, Cirimele J PloS one 27352250 PLoS One 2016 https://www.ncbi.nlm.nih.gov/pubmed/27352250
Higher-order organization of complex networks. Benson AR, Gleich DF, Leskovec J Science (New York, N.Y.) 27387949 Science 2016 Jul 8 https://www.ncbi.nlm.nih.gov/pubmed/27387949
Donor Retention in Online Crowdfunding Communities: A Case Study of DonorsChoose.org. Althoff T, Leskovec J Proceedings of the ... International World-Wide Web Conference. International WWW Conference 27077139 Proc Int World Wide Web Conf 2015 May https://www.ncbi.nlm.nih.gov/pubmed/27077139
Snorkel: Rapid Training Data Creation with Weak Supervision. Ratner A, Bach SH, Ehrenberg H, Fries J, Wu S, Ré C Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases 29770249 Proceedings VLDB Endowment 2017 Nov https://www.ncbi.nlm.nih.gov/pubmed/29770249
The Selective Labels Problem: Evaluating Algorithmic Predictions in the Presence of Unobservables. Lakkaraju H, Kleinberg J, Leskovec J, Ludwig J, Mullainathan S KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 29780658 KDD 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/29780658
I'll Be Back: On the Multiple Lives of Users of a Mobile Activity Tracking Application. Lin Z, Althoff T, Leskovec J Proceedings of the ... International World-Wide Web Conference. International WWW Conference 29780978 Proc Int World Wide Web Conf 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/29780978
Anyone Can Become a Troll: Causes of Trolling Behavior in Online Discussions. Cheng J, Bernstein M, Danescu-Niculescu-Mizil C, Leskovec J CSCW : proceedings of the Conference on Computer-Supported Cooperative Work. Conference on Computer-Supported Cooperative Work 29399664 CSCW Conf Comput Support Coop Work 2017 Feb-Mar https://www.ncbi.nlm.nih.gov/pubmed/29399664
Learning to Compose Domain-Specific Transformations for Data Augmentation. Ratner AJ, Ehrenberg HR, Hussain Z, Dunnmon J, Ré C Advances in neural information processing systems 29375240 Adv Neural Inf Process Syst 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/29375240
Talking the Walk: Perceptions of Neighborhood Characteristics from Users of Open Streets Programs in Latin America and the USA. Zieff SG, Musselman EA, Sarmiento OL, Gonzalez SA, Aguilar-Farias N, Winter SJ, Hipp JA, Quijano K, King AC Journal of urban health : bulletin of the New York Academy of Medicine 29948785 J Urban Health 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/29948785
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. Seth A, Hicks JL, Uchida TK, Habib A, Dembia CL, Dunne JJ, Ong CF, DeMers MS, Rajagopal A, Millard M, Hamner SR, Arnold EM, Yong JR, Lakshmikanth SK, Sherman MA, Ku JP, Delp SL PLoS computational biology 30048444 PLoS Comput Biol 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/30048444
Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities. Zitnik M, Nguyen F, Wang B, Leskovec J, Goldenberg A, Hoffman MM An international journal on information fusion 30467459 Inf Fusion 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/30467459
ShortFuse: Biomedical Time Series Representations in the Presence of Structured Information. Fiterau M, Bhooshan S, Fries J, Bournhonesque C, Hicks J, Halilaj E, Ré C, Delp S Proceedings of machine learning research 30882086 Proc Mach Learn Res 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/30882086
Enhancing safe routes to school programs through community-engaged citizen science: two pilot investigations in lower density areas of Santa Clara County, California, USA. Rodriguez NM, Arce A, Kawaguchi A, Hua J, Broderick B, Winter SJ, King AC BMC public health 30823917 BMC Public Health 2019 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/30823917
Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research. Erdemir A, Hunter PJ, Holzapfel GA, Loew LM, Middleton J, Jacobs CR, Nithiarasu P, Löhner R, Wei G, Winkelstein BA, Barocas VH, Guilak F, Ku JP, Hicks JL, Delp SL, Sacks M, Weiss JA, Ateshian GA, Maas SA, McCulloch AD, Peng GCY Journal of biomechanical engineering 29247253 J Biomech Eng 2018 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/29247253
Testing the comparative effects of physical activity advice by humans vs. computers in underserved populations: The COMPASS trial design, methods, and baseline characteristics. King AC, Campero I, Sheats JL, Castro Sweet CM, Garcia D, Chazaro A, Blanco G, Hauser M, Fierros F, Ahn DK, Diaz J, Done M, Fernandez J, Bickmore T Contemporary clinical trials 28739541 Contemp Clin Trials 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/28739541
Extracting Databases from Dark Data with DeepDive. Zhang C, Shin J, Ré C, Cafarella M, Niu F Proceedings. ACM-SIGMOD International Conference on Management of Data 28316365 Proc ACM SIGMOD Int Conf Manag Data 2016 Jun-Jul https://www.ncbi.nlm.nih.gov/pubmed/28316365
Network analysis: a novel method for mapping neonatal acute transport patterns in California. Kunz SN, Zupancic JAF, Rigdon J, Phibbs CS, Lee HC, Gould JB, Leskovec J, Profit J Journal of perinatology : official journal of the California Perinatal Association 28333155 J Perinatol 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28333155
DeepDive: Declarative Knowledge Base Construction. De Sa C, Ratner A, Ré C, Shin J, Wang F, Wu S, Zhang C SIGMOD record 28344371 SIGMOD Rec 2016 Mar https://www.ncbi.nlm.nih.gov/pubmed/28344371
Ensuring Rapid Mixing and Low Bias for Asynchronous Gibbs Sampling. De Sa C, Olukotun K, Ré C JMLR workshop and conference proceedings 28344730 JMLR Workshop Conf Proc 2016 https://www.ncbi.nlm.nih.gov/pubmed/28344730
Flexible Analog Search with Kernel PCA Embedded Molecule Vectors. Rensi S, Altman RB Computational and structural biotechnology journal 28458783 Comput Struct Biotechnol J 2017 https://www.ncbi.nlm.nih.gov/pubmed/28458783
Predicting multicellular function through multi-layer tissue networks. Zitnik M, Leskovec J Bioinformatics (Oxford, England) 28881986 Bioinformatics 2017 Jul 15 https://www.ncbi.nlm.nih.gov/pubmed/28881986
Large-scale physical activity data reveal worldwide activity inequality. Althoff T, Sosič R, Hicks JL, King AC, Delp SL, Leskovec J Nature 28693034 Nature 2017 Jul 20 https://www.ncbi.nlm.nih.gov/pubmed/28693034
Slice-based Learning: A Programming Model for Residual Learning in Critical Data Slices. Chen VS, Wu S, Weng Z, Ratner A, Ré C Advances in neural information processing systems 31871391 Adv Neural Inf Process Syst 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/31871391
On the Downstream Performance of Compressed Word Embeddings. May A, Zhang J, Dao T, Ré C Advances in neural information processing systems 31885428 Adv Neural Inf Process Syst 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/31885428
Muscle Contributions to Upper-Extremity Movement and Work From a Musculoskeletal Model of the Human Shoulder. Seth A, Dong M, Matias R, Delp S Frontiers in neurorobotics 31780916 Front Neurorobot 2019 https://www.ncbi.nlm.nih.gov/pubmed/31780916
Learning Compressed Transforms with Low Displacement Rank. Thomas AT, Gu A, Dao T, Rudra A, Ré C Advances in neural information processing systems 31130799 Adv Neural Inf Process Syst 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/31130799
Inferring Multidimensional Rates of Aging from Cross-Sectional Data. Pierson E, Koh PW, Hashimoto T, Koller D, Leskovec J, Eriksson N, Liang P Proceedings of machine learning research 31538144 Proc Mach Learn Res 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/31538144
Modeling longitudinal data using matrix completion. Kidziński Ł, Hastie T Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America 38993268 J Comput Graph Stat 2024 https://www.ncbi.nlm.nih.gov/pubmed/38993268
Automated Classification of Radiographic Knee Osteoarthritis Severity Using Deep Neural Networks. Thomas KA, Kidziński Ł, Halilaj E, Fleming SL, Venkataraman GR, Oei EHG, Gold GE, Delp SL Radiology. Artificial intelligence 32280948 Radiol Artif Intell 2020 Mar 18 https://www.ncbi.nlm.nih.gov/pubmed/32280948
GNNExplainer: Generating Explanations for Graph Neural Networks. Ying R, Bourgeois D, You J, Zitnik M, Leskovec J Advances in neural information processing systems 32265580 Adv Neural Inf Process Syst 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/32265580
Coupled exoskeleton assistance simplifies control and maintains metabolic benefits: A simulation study. Bianco NA, Franks PW, Hicks JL, Delp SL PloS one 34986191 PLoS One 2022 https://www.ncbi.nlm.nih.gov/pubmed/34986191
Serving Up FLAN. A Food Literacy and Nutrition Intervention to Fend Off Food Insecurity. Royer MF, Hauser ME, Zamora AN, Campero MI, Garcia D, Gabaray M, Sheats JL, King AC Research square 38766254 Res Sq 2024 May 7 https://www.ncbi.nlm.nih.gov/pubmed/38766254
Evaluating semi-supervision methods for medical image segmentation: applications in cardiac magnetic resonance imaging. Hooper SM, Wu S, Davies RH, Bhuva A, Schelbert EB, Moon JC, Kellman P, Xue H, Langlotz C, Ré C Journal of medical imaging (Bellingham, Wash.) 37009059 J Med Imaging (Bellingham) 2023 Mar https://www.ncbi.nlm.nih.gov/pubmed/37009059
Large-scale diet tracking data reveal disparate associations between food environment and diet. Althoff T, Nilforoshan H, Hua J, Leskovec J Nature communications 35042849 Nat Commun 2022 Jan 18 https://www.ncbi.nlm.nih.gov/pubmed/35042849
Deep reinforcement learning for modeling human locomotion control in neuromechanical simulation. Song S, Kidziński Ł, Peng XB, Ong C, Hicks J, Levine S, Atkeson CG, Delp SL Journal of neuroengineering and rehabilitation 34399772 J Neuroeng Rehabil 2021 Aug 16 https://www.ncbi.nlm.nih.gov/pubmed/34399772
Cardiac Imaging of Aortic Valve Area From 34 287 UK Biobank Participants Reveals Novel Genetic Associations and Shared Genetic Comorbidity With Multiple Disease Phenotypes. Córdova-Palomera A, Tcheandjieu C, Fries JA, Varma P, Chen VS, Fiterau M, Xiao K, Tejeda H, Keavney BD, Cordell HJ, Tanigawa Y, Venkataraman G, Rivas MA, Ré C, Ashley E, Priest JR Circulation. Genomic and precision medicine 33125279 Circ Genom Precis Med 2020 Dec https://www.ncbi.nlm.nih.gov/pubmed/33125279
Pre-operative gastrocnemius lengths in gait predict outcomes following gastrocnemius lengthening surgery in children with cerebral palsy. Rajagopal A, Kidziński Ł, McGlaughlin AS, Hicks JL, Delp SL, Schwartz MH PloS one 32502157 PLoS One 2020 https://www.ncbi.nlm.nih.gov/pubmed/32502157
Deep neural networks enable quantitative movement analysis using single-camera videos. Kidziński Ł, Yang B, Hicks JL, Rajagopal A, Delp SL, Schwartz MH Nature communications 32792511 Nat Commun 2020 Aug 13 https://www.ncbi.nlm.nih.gov/pubmed/32792511
Objective measurement of function following lumbar spinal stenosis decompression reveals improved functional capacity with stagnant real-life physical activity. Smuck M, Muaremi A, Zheng P, Norden J, Sinha A, Hu R, Tomkins-Lane C The spine journal : official journal of the North American Spine Society 28962914 Spine J 2018 Jan https://www.ncbi.nlm.nih.gov/pubmed/28962914
How Gamification Affects Physical Activity: Large-scale Analysis of Walking Challenges in a Mobile Application. Shameli A, Althoff T, Saberi A, Leskovec J Proceedings of the ... International World-Wide Web Conference. International WWW Conference 28990011 Proc Int World Wide Web Conf 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/28990011
Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative. Halilaj E, Le Y, Hicks JL, Hastie TJ, Delp SL Osteoarthritis and cartilage 30130590 Osteoarthritis Cartilage 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/30130590
Population-Scale Pervasive Health. Althoff T IEEE pervasive computing 29770105 IEEE Pervasive Comput 2017 Oct-Dec https://www.ncbi.nlm.nih.gov/pubmed/29770105
Local Higher-Order Graph Clustering. Yin H, Benson AR, Leskovec J, Gleich DF KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 29770258 KDD 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/29770258
Weighted SGD for ℓ (p) Regression with Randomized Preconditioning. Yang J, Chow YL, Ré C, Mahoney MW Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms 29782626 Proc Annu ACM SIAM Symp Discret Algorithms 2016 Jan https://www.ncbi.nlm.nih.gov/pubmed/29782626
Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Mulugeta L, Drach A, Erdemir A, Hunt CA, Horner M, Ku JP, Myers JG Jr, Vadigepalli R, Lytton WW Frontiers in neuroinformatics 29713272 Front Neuroinform 2018 https://www.ncbi.nlm.nih.gov/pubmed/29713272
SnapVX: A Network-Based Convex Optimization Solver. Hallac D, Wong C, Diamond S, Sharang A, Sosič R, Boyd S, Leskovec J Journal of machine learning research : JMLR 29599649 J Mach Learn Res 2017 https://www.ncbi.nlm.nih.gov/pubmed/29599649
Bias correction in species distribution models: pooling survey and collection data for multiple species. Fithian W, Elith J, Hastie T, Keith DA Methods in ecology and evolution 27840673 Methods Ecol Evol 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/27840673
Interpretable Decision Sets: A Joint Framework for Description and Prediction. Lakkaraju H, Bach SH, Jure L KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 27853627 KDD 2016 Aug https://www.ncbi.nlm.nih.gov/pubmed/27853627
Full-Body Musculoskeletal Model for Muscle-Driven Simulation of Human Gait. Rajagopal A, Dembia CL, DeMers MS, Delp DD, Hicks JL, Delp SL IEEE transactions on bio-medical engineering 27392337 IEEE Trans Biomed Eng 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/27392337
Leveraging Citizen Science and Information Technology for Population Physical Activity Promotion. King AC, Winter SJ, Sheats JL, Rosas LG, Buman MP, Salvo D, Rodriguez NM, Seguin RA, Moran M, Garber R, Broderick B, Zieff SG, Sarmiento OL, Gonzalez SA, Banchoff A, Dommarco JR Translational journal of the American College of Sports Medicine 27525309 Transl J Am Coll Sports Med 2016 May 15 https://www.ncbi.nlm.nih.gov/pubmed/27525309
EmptyHeaded: A Relational Engine for Graph Processing. Aberger CR, Tu S, Olukotun K, Ré C Proceedings. ACM-SIGMOD International Conference on Management of Data 28077912 Proc ACM SIGMOD Int Conf Manag Data 2016 Jun-Jul https://www.ncbi.nlm.nih.gov/pubmed/28077912
Large-scale Analysis of Counseling Conversations: An Application of Natural Language Processing to Mental Health. Althoff T, Clark K, Leskovec J Transactions of the Association for Computational Linguistics 28344978 Trans Assoc Comput Linguist 2016 https://www.ncbi.nlm.nih.gov/pubmed/28344978
Online Actions with Offline Impact: How Online Social Networks Influence Online and Offline User Behavior. Althoff T, Jindal P, Leskovec J Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining 28345078 Proc Int Conf Web Search Data Min 2017 Feb https://www.ncbi.nlm.nih.gov/pubmed/28345078
Muscle-tendon mechanics explain unexpected effects of exoskeleton assistance on metabolic rate during walking. Jackson RW, Dembia CL, Delp SL, Collins SH The Journal of experimental biology 28341663 J Exp Biol 2017 Jun 1 https://www.ncbi.nlm.nih.gov/pubmed/28341663
Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much. He B, De Sa C, Mitliagkas I, Ré C Advances in neural information processing systems 28344429 Adv Neural Inf Process Syst 2016 https://www.ncbi.nlm.nih.gov/pubmed/28344429
SNAP: A General Purpose Network Analysis and Graph Mining Library. Leskovec J, Sosič R ACM transactions on intelligent systems and technology 28344853 ACM Trans Intell Syst Technol 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/28344853
Simulating ideal assistive devices to reduce the metabolic cost of walking with heavy loads. Dembia CL, Silder A, Uchida TK, Hicks JL, Delp SL PloS one 28700630 PLoS One 2017 https://www.ncbi.nlm.nih.gov/pubmed/28700630
Evolution of resilience in protein interactomes across the tree of life. Zitnik M, Sosič R, Feldman MW, Leskovec J Proceedings of the National Academy of Sciences of the United States of America 30765515 Proc Natl Acad Sci U S A 2019 Mar 5 https://www.ncbi.nlm.nih.gov/pubmed/30765515
Wearable Sleep Technology in Clinical and Research Settings. de Zambotti M, Cellini N, Goldstone A, Colrain IM, Baker FC Medicine and science in sports and exercise 30789439 Med Sci Sports Exerc 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/30789439
Snorkel MeTaL: Weak Supervision for Multi-Task Learning. Ratner A, Hancock B, Dunnmon J, Goldman R, Ré C Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.) 30931438 Proc Second Workshop Data Manag End End Mach Learn (2018) 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/30931438
Learning one's genetic risk changes physiology independent of actual genetic risk. Turnwald BP, Goyer JP, Boles DZ, Silder A, Delp SL, Crum AJ Nature human behaviour 30932047 Nat Hum Behav 2019 Jan https://www.ncbi.nlm.nih.gov/pubmed/30932047
Automatic real-time gait event detection in children using deep neural networks. Kidziński Ł, Delp S, Schwartz M PloS one 30703141 PLoS One 2019 https://www.ncbi.nlm.nih.gov/pubmed/30703141
High-frequency actionable pathogenic exome variants in an average-risk cohort. Rego S, Dagan-Rosenfeld O, Zhou W, Sailani MR, Limcaoco P, Colbert E, Avina M, Wheeler J, Craig C, Salins D, Röst HL, Dunn J, McLaughlin T, Steinmetz LM, Bernstein JA, Snyder MP Cold Spring Harbor molecular case studies 30487145 Cold Spring Harb Mol Case Stud 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/30487145
Validity of Cardiorespiratory Fitness Measured with Fitbit Compared to V˙O2max. Klepin K, Wing D, Higgins M, Nichols J, Godino JG Medicine and science in sports and exercise 31107835 Med Sci Sports Exerc 2019 Nov https://www.ncbi.nlm.nih.gov/pubmed/31107835
Maximizing the promise of citizen science to advance health and prevent disease. King AC, Winter SJ, Chrisinger BW, Hua J, Banchoff AW Preventive medicine 30593793 Prev Med 2019 Feb https://www.ncbi.nlm.nih.gov/pubmed/30593793
Mindtagger: A Demonstration of Data Labeling in Knowledge Base Construction. Shin J, Ré C, Cafarella M Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases 27144082 Proceedings VLDB Endowment 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/27144082
Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running. Uchida TK, Hicks JL, Dembia CL, Delp SL PloS one 26930416 PLoS One 2016 https://www.ncbi.nlm.nih.gov/pubmed/26930416
Ringo: Interactive Graph Analytics on Big-Memory Machines. Perez Y, Sosič R, Banerjee A, Puttagunta R, Raison M, Shah P, Leskovec J Proceedings. ACM-SIGMOD International Conference on Management of Data 27081215 Proc ACM SIGMOD Int Conf Manag Data 2015 May-Jun https://www.ncbi.nlm.nih.gov/pubmed/27081215
Snorkel: rapid training data creation with weak supervision. Ratner A, Bach SH, Ehrenberg H, Fries J, Wu S, Ré C The VLDB journal : very large data bases : a publication of the VLDB Endowment 32214778 VLDB J 2020 https://www.ncbi.nlm.nih.gov/pubmed/32214778
G2SAT: Learning to Generate SAT Formulas. You J, Wu H, Barrett C, Ramanujan R, Leskovec J Advances in neural information processing systems 32265581 Adv Neural Inf Process Syst 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/32265581
Cross-Modal Data Programming Enables Rapid Medical Machine Learning. Dunnmon JA, Ratner AJ, Saab K, Khandwala N, Markert M, Sagreiya H, Goldman R, Lee-Messer C, Lungren MP, Rubin DL, Ré C Patterns (New York, N.Y.) 32776018 Patterns (N Y) 2020 May 8 https://www.ncbi.nlm.nih.gov/pubmed/32776018
Medical device surveillance with electronic health records. Callahan A, Fries JA, Ré C, Huddleston JI 3rd, Giori NJ, Delp S, Shah NH NPJ digital medicine 31583282 NPJ Digit Med 2019 https://www.ncbi.nlm.nih.gov/pubmed/31583282
Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations. Ong CF, Geijtenbeek T, Hicks JL, Delp SL PLoS computational biology 31589597 PLoS Comput Biol 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/31589597
Best practices for analyzing large-scale health data from wearables and smartphone apps. Hicks JL, Althoff T, Sosic R, Kuhar P, Bostjancic B, King AC, Leskovec J, Delp SL NPJ digital medicine 31304391 NPJ Digit Med 2019 https://www.ncbi.nlm.nih.gov/pubmed/31304391
Learning Fast Algorithms for Linear Transforms Using Butterfly Factorizations. Dao T, Gu A, Eichhorn M, Rudra A, Ré C Proceedings of machine learning research 31777847 Proc Mach Learn Res 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/31777847
Large-scale extraction of gene interactions from full-text literature using DeepDive. Mallory EK, Zhang C, Ré C, Altman RB Bioinformatics (Oxford, England) 26338771 Bioinformatics 2016 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/26338771
The emerging clinical role of wearables: factors for successful implementation in healthcare. Smuck M, Odonkor CA, Wilt JK, Schmidt N, Swiernik MA NPJ digital medicine 33692479 NPJ Digit Med 2021 Mar 10 https://www.ncbi.nlm.nih.gov/pubmed/33692479
Hidden Stratification Causes Clinically Meaningful Failures in Machine Learning for Medical Imaging. Oakden-Rayner L, Dunnmon J, Carneiro G, Ré C Proceedings of the ACM Conference on Health, Inference, and Learning 33196064 Proc ACM Conf Health Inference Learn (2020) 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/33196064
Benchmarking explanation methods for mental state decoding with deep learning models. Thomas AW, Ré C, Poldrack RA NeuroImage 37059157 Neuroimage 2023 Jun https://www.ncbi.nlm.nih.gov/pubmed/37059157
Generalized Matrix Factorization: efficient algorithms for fitting generalized linear latent variable models to large data arrays. Kidziński Ł, Hui FKC, Warton DI, Hastie T Journal of machine learning research : JMLR 37102181 J Mach Learn Res 2022 Nov https://www.ncbi.nlm.nih.gov/pubmed/37102181
Prospector Heads: Generalized Feature Attribution for Large Models & Data. Machiraju G, Derry A, Desai A, Guha N, Karimi AH, Zou J, Altman RB, Ré C, Mallick P ArXiv 38947933 ArXiv 2024 Jun 20 https://www.ncbi.nlm.nih.gov/pubmed/38947933
OpenSim Moco: Musculoskeletal optimal control. Dembia CL, Bianco NA, Falisse A, Hicks JL, Delp SL PLoS computational biology 33370252 PLoS Comput Biol 2020 Dec https://www.ncbi.nlm.nih.gov/pubmed/33370252
Daily, weekly, seasonal and menstrual cycles in women's mood, behaviour and vital signs. Pierson E, Althoff T, Thomas D, Hillard P, Leskovec J Nature human behaviour 33526880 Nat Hum Behav 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/33526880
Towards trustworthy seizure onset detection using workflow notes. Saab K, Tang S, Taha M, Lee-Messer C, Ré C, Rubin DL NPJ digital medicine 38383884 NPJ Digit Med 2024 Feb 21 https://www.ncbi.nlm.nih.gov/pubmed/38383884
Citizen science applied to building healthier community environments: advancing the field through shared construct and measurement development. Hinckson E, Schneider M, Winter SJ, Stone E, Puhan M, Stathi A, Porter MM, Gardiner PA, Dos Santos DL, Wolff A, King AC The international journal of behavioral nutrition and physical activity 28962580 Int J Behav Nutr Phys Act 2017 Sep 29 https://www.ncbi.nlm.nih.gov/pubmed/28962580
Some methods for heterogeneous treatment effect estimation in high dimensions. Powers S, Qian J, Jung K, Schuler A, Shah NH, Hastie T, Tibshirani R Statistics in medicine 29508417 Stat Med 2018 May 20 https://www.ncbi.nlm.nih.gov/pubmed/29508417
Loyalty in Online Communities. Hamilton WL, Zhang J, Danescu-Niculescu-Mizil C, Jurafsky D, Leskovec J Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media 29354326 Proc Int AAAI Conf Weblogs Soc Media 2017 May https://www.ncbi.nlm.nih.gov/pubmed/29354326
Community Identity and User Engagement in a Multi-Community Landscape. Zhang J, Hamilton WL, Danescu-Niculescu-Mizil C, Jurafsky D, Leskovec J Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media 29354325 Proc Int AAAI Conf Weblogs Soc Media 2017 May https://www.ncbi.nlm.nih.gov/pubmed/29354325
Data Programming: Creating Large Training Sets, Quickly. Ratner A, De Sa C, Wu S, Selsam D, Ré C Advances in neural information processing systems 29872252 Adv Neural Inf Process Syst 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/29872252
Physical activity is associated with changes in knee cartilage microstructure. Halilaj E, Hastie TJ, Gold GE, Delp SL Osteoarthritis and cartilage 29605382 Osteoarthritis Cartilage 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/29605382
Simulation-Based Design for Wearable Robotic Systems: An Optimization Framework for Enhancing a Standing Long Jump. Ong CF, Hicks JL, Delp SL IEEE transactions on bio-medical engineering 26258930 IEEE Trans Biomed Eng 2016 May https://www.ncbi.nlm.nih.gov/pubmed/26258930
Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information. Li X, Dunn J, Salins D, Zhou G, Zhou W, Schüssler-Fiorenza Rose SM, Perelman D, Colbert E, Runge R, Rego S, Sonecha R, Datta S, McLaughlin T, Snyder MP PLoS biology 28081144 PLoS Biol 2017 Jan https://www.ncbi.nlm.nih.gov/pubmed/28081144
Physical performance analysis: A new approach to assessing free-living physical activity in musculoskeletal pain and mobility-limited populations. Smuck M, Tomkins-Lane C, Ith MA, Jarosz R, Kao MJ PloS one 28235039 PLoS One 2017 https://www.ncbi.nlm.nih.gov/pubmed/28235039
Tensor Spectral Clustering for Partitioning Higher-order Network Structures. Benson AR, Gleich DF, Leskovec J Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining 27812399 Proc SIAM Int Conf Data Min 2015 https://www.ncbi.nlm.nih.gov/pubmed/27812399
Cultural Shift or Linguistic Drift? Comparing Two Computational Measures of Semantic Change. Hamilton WL, Leskovec J, Jurafsky D Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing 28580459 Proc Conf Empir Methods Nat Lang Process 2016 Nov https://www.ncbi.nlm.nih.gov/pubmed/28580459
Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running. Uchida TK, Seth A, Pouya S, Dembia CL, Hicks JL, Delp SL PloS one 27656901 PLoS One 2016 https://www.ncbi.nlm.nih.gov/pubmed/27656901
CVXPY: A Python-Embedded Modeling Language for Convex Optimization. Diamond S, Boyd S Journal of machine learning research : JMLR 27375369 J Mach Learn Res 2016 Apr https://www.ncbi.nlm.nih.gov/pubmed/27375369
Network Lasso: Clustering and Optimization in Large Graphs. Hallac D, Leskovec J, Boyd S KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 27398260 KDD 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/27398260
Development of a dynamic computational model of social cognitive theory. Riley WT, Martin CA, Rivera DE, Hekler EB, Adams MA, Buman MP, Pavel M, King AC Translational behavioral medicine 27848208 Transl Behav Med 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/27848208
HUMAN DECISIONS AND MACHINE PREDICTIONS. Kleinberg J, Lakkaraju H, Leskovec J, Ludwig J, Mullainathan S The quarterly journal of economics 29755141 Q J Econ 2018 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/29755141
Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data. Hallac D, Vare S, Boyd S, Leskovec J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 29770257 KDD 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/29770257
Potential corner case cautions regarding publicly available implementations of the National Cancer Institute's nonwear/wear classification algorithm for accelerometer data. Moore HE 4th, Haydel KF, Banda JA, Fiterau M, Desai M, Robinson TN PloS one 30596771 PLoS One 2018 https://www.ncbi.nlm.nih.gov/pubmed/30596771
The turning and barrier course reveals gait parameters for detecting freezing of gait and measuring the efficacy of deep brain stimulation. O'Day J, Syrkin-Nikolau J, Anidi C, Kidzinski L, Delp S, Bronte-Stewart H PloS one 32348346 PLoS One 2020 https://www.ncbi.nlm.nih.gov/pubmed/32348346
Scene Graph Prediction with Limited Labels. Chen VS, Varma P, Krishna R, Bernstein M, Ré C, Fei-Fei L Proceedings. IEEE International Conference on Computer Vision 32218709 Proc IEEE Int Conf Comput Vis 2019 Oct-Nov https://www.ncbi.nlm.nih.gov/pubmed/32218709
Hyperbolic Graph Convolutional Neural Networks. Chami I, Ying R, Ré C, Leskovec J Advances in neural information processing systems 32256024 Adv Neural Inf Process Syst 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/32256024
Testing the effectiveness of physical activity advice delivered via text messaging vs. human phone advisors in a Latino population: The On The Move randomized controlled trial design and methods. King AC, Campero I, Sheats JL, Castro Sweet CM, Espinosa PR, Garcia D, Hauser M, Done M, Patel ML, Parikh NM, Corral C, Ahn DK Contemporary clinical trials 32659437 Contemp Clin Trials 2020 Aug https://www.ncbi.nlm.nih.gov/pubmed/32659437
Snuba: Automating Weak Supervision to Label Training Data. Varma P, Ré C Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases 31777681 Proceedings VLDB Endowment 2018 Nov https://www.ncbi.nlm.nih.gov/pubmed/31777681
Predicting Dynamic Embedding Trajectory in Temporal Interaction Networks. Kumar S, Zhang X, Leskovec J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 31538030 KDD 2019 Aug https://www.ncbi.nlm.nih.gov/pubmed/31538030
Predicting pregnancy using large-scale data from a women's health tracking mobile application. Liu B, Shi S, Wu Y, Thomas D, Symul L, Pierson E, Leskovec J Proceedings of the ... International World-Wide Web Conference. International WWW Conference 31538145 Proc Int World Wide Web Conf 2019 May https://www.ncbi.nlm.nih.gov/pubmed/31538145
High-fidelity musculoskeletal modeling reveals that motor planning variability contributes to the speed-accuracy tradeoff. Al Borno M, Vyas S, Shenoy KV, Delp SL eLife 33325369 Elife 2020 Dec 16 https://www.ncbi.nlm.nih.gov/pubmed/33325369
Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective. Erdemir A, Mulugeta L, Ku JP, Drach A, Horner M, Morrison TM, Peng GCY, Vadigepalli R, Lytton WW, Myers JG Jr Journal of translational medicine 32993675 J Transl Med 2020 Sep 29 https://www.ncbi.nlm.nih.gov/pubmed/32993675
Open Source Software for Automatic Subregional Assessment of Knee Cartilage Degradation Using Quantitative T2 Relaxometry and Deep Learning. Thomas KA, Krzemiński D, Kidziński Ł, Paul R, Rubin EB, Halilaj E, Black MS, Chaudhari A, Gold GE, Delp SL Cartilage 34496667 Cartilage 2021 Dec https://www.ncbi.nlm.nih.gov/pubmed/34496667
Sensing leg movement enhances wearable monitoring of energy expenditure. Slade P, Kochenderfer MJ, Delp SL, Collins SH Nature communications 34257310 Nat Commun 2021 Jul 13 https://www.ncbi.nlm.nih.gov/pubmed/34257310
Mobile Health: making the leap to research and clinics. Ku JP, Sim I NPJ digital medicine 33990671 NPJ Digit Med 2021 May 14 https://www.ncbi.nlm.nih.gov/pubmed/33990671
Learning the Network Structure of Heterogeneous Data via Pairwise Exponential Markov Random Fields. Park Y, Hallac D, Boyd S, Leskovec J Proceedings of machine learning research 30931433 Proc Mach Learn Res 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/30931433
Training Classifiers with Natural Language Explanations. Hancock B, Bringmann M, Varma P, Liang P, Wang S, Ré C Proceedings of the conference. Association for Computational Linguistics. Meeting 31130772 Proc Conf Assoc Comput Linguist Meet 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/31130772
A two-pronged progress in structured dense matrixvector multiplication. De Sa C, Gu A, Puttagunta R, Ré C, Rudra A Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms 31130802 Proc Annu ACM SIAM Symp Discret Algorithms 2018 Jan https://www.ncbi.nlm.nih.gov/pubmed/31130802
Representation Tradeoffs for Hyperbolic Embeddings. De Sa C, Gu A, Ré C, Sala F Proceedings of machine learning research 31131375 Proc Mach Learn Res 2018 https://www.ncbi.nlm.nih.gov/pubmed/31131375
Multimodal Teaching Analytics: Automated Extraction of Orchestration Graphs from Wearable Sensor Data. Prieto LP, Sharma K, Kidzinski Ł, Rodríguez-Triana MJ, Dillenbourg P Journal of computer assisted learning 29686446 J Comput Assist Learn 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/29686446
Personal Omics for Precision Health. Kellogg RA, Dunn J, Snyder MP Circulation research 29700064 Circ Res 2018 Apr 27 https://www.ncbi.nlm.nih.gov/pubmed/29700064
Bringing Micro to the Macro: How Citizen Science Data Enrich Geospatial Visualizations to Advance Health Equity. Soltani S, Hinman JA, Blanco-Velazquez I, Banchoff AW, Campero MI, Nelson LM, King AC Journal of maps 37448978 J Maps 2023 https://www.ncbi.nlm.nih.gov/pubmed/37448978
Sleep Duration is Associated with Fruit and Vegetable Intake in Lower Income Adults from the San Francisco Bay Area: A Cross-Sectional Analysis. Zamora AN, Patel ML, Campero MI, Garcia DM, Portillo SA, King AC Nutrients 40077717 Nutrients 2025 Feb 28 https://www.ncbi.nlm.nih.gov/pubmed/40077717
Sequence modeling and design from molecular to genome scale with Evo. Nguyen E, Poli M, Durrant MG, Kang B, Katrekar D, Li DB, Bartie LJ, Thomas AW, King SH, Brixi G, Sullivan J, Ng MY, Lewis A, Lou A, Ermon S, Baccus SA, Hernandez-Boussard T, Ré C, Hsu PD, Hie BL Science (New York, N.Y.) 39541441 Science 2024 Nov 15 https://www.ncbi.nlm.nih.gov/pubmed/39541441
Serving up FLAN. a food literacy and nutrition intervention to fend off food insecurity. Royer MF, Hauser ME, Zamora AN, Campero MI, Garcia D, Gabaray M, Sheats JL, King AC BMC nutrition 39044224 BMC Nutr 2024 Jul 23 https://www.ncbi.nlm.nih.gov/pubmed/39044224
Incremental Knowledge Base Construction Using DeepDive. Shin J, Wu S, Wang F, De Sa C, Zhang C, Ré C Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases 27144081 Proceedings VLDB Endowment 2015 Jul https://www.ncbi.nlm.nih.gov/pubmed/27144081
Shallow Representation Learning via Kernel PCA Improves QSAR Modelability. Rensi SE, Altman RB Journal of chemical information and modeling 28727421 J Chem Inf Model 2017 Aug 28 https://www.ncbi.nlm.nih.gov/pubmed/28727421
Inducing Domain-Specific Sentiment Lexicons from Unlabeled Corpora. Hamilton WL, Clark K, Leskovec J, Jurafsky D Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing 28660257 Proc Conf Empir Methods Nat Lang Process 2016 Nov https://www.ncbi.nlm.nih.gov/pubmed/28660257
Preparatory co-activation of the ankle muscles may prevent ankle inversion injuries. DeMers MS, Hicks JL, Delp SL Journal of biomechanics 28057351 J Biomech 2017 Feb 8 https://www.ncbi.nlm.nih.gov/pubmed/28057351
node2vec: Scalable Feature Learning for Networks. Grover A, Leskovec J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 27853626 KDD 2016 Aug https://www.ncbi.nlm.nih.gov/pubmed/27853626
A Database Framework for Classifier Engineering. Kimelfeld B, Ré C CEUR workshop proceedings. 27274719 CEUR Workshop Proc 2015 May https://www.ncbi.nlm.nih.gov/pubmed/27274719
Rapidly Mixing Gibbs Sampling for a Class of Factor Graphs Using Hierarchy Width. De Sa C, Zhang C, Olukotun K, Ré C Advances in neural information processing systems 27279724 Adv Neural Inf Process Syst 2015 Dec https://www.ncbi.nlm.nih.gov/pubmed/27279724
Taming the Wild: A Unified Analysis of Hogwild!-Style Algorithms. De Sa C, Zhang C, Olukotun K, Ré C Advances in neural information processing systems 27330264 Adv Neural Inf Process Syst 2015 Dec https://www.ncbi.nlm.nih.gov/pubmed/27330264
Gait biomechanics in the era of data science. Ferber R, Osis ST, Hicks JL, Delp SL Journal of biomechanics 27814971 J Biomech 2016 Dec 8 https://www.ncbi.nlm.nih.gov/pubmed/27814971
Growing Wikipedia Across Languages via Recommendation. Wulczyn E, West R, Zia L, Leskovec J Proceedings of the ... International World-Wide Web Conference. International WWW Conference 27819073 Proc Int World Wide Web Conf 2016 Apr https://www.ncbi.nlm.nih.gov/pubmed/27819073
Evaluation of an electronic health record-supported obesity management protocol implemented in a community health center: a cautionary note. Steglitz J, Edberg D, Sommers M, Talen MR, Thornton LK, Spring B Journal of the American Medical Informatics Association : JAMIA 25665700 J Am Med Inform Assoc 2015 Jul https://www.ncbi.nlm.nih.gov/pubmed/25665700
Association of BNP and Troponin Levels with Outcome among Cardiac Resynchronization Therapy Recipients. Shalaby AA, Abraham WT, Fonarow GC, Bersohn MM, Gorcsan J 3rd, Lee LY, Halilovic J, Saba S, Maisel A, Singh JP, Sonel A, Kadish A Pacing and clinical electrophysiology : PACE 25677851 Pacing Clin Electrophysiol 2015 May https://www.ncbi.nlm.nih.gov/pubmed/25677851
iShadow: Design of a Wearable, Real-Time Mobile Gaze Tracker. Mayberry A, Hu P, Marlin B, Salthouse C, Ganesan D MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services 26539565 MobiSys 2014 Jun https://www.ncbi.nlm.nih.gov/pubmed/26539565
Automated-immunosensor with centrifugal fluid valves for salivary cortisol measurement. Yamaguchi M, Katagata H, Tezuka Y, Niwa D, Shetty V Sensing and Bio-Sensing Research 26543818 Sens Biosensing Res 2014 Aug https://www.ncbi.nlm.nih.gov/pubmed/26543818
puffMarker: A Multi-Sensor Approach for Pinpointing the Timing of First Lapse in Smoking Cessation. Saleheen N, Ali AA, Hossain SM, Sarker H, Chatterjee S, Marlin B, Ertin E, al'Absi M, Kumar S Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference) 26543927 Proc ACM Int Conf Ubiquitous Comput 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/26543927
A Just-In-Time Adaptive intervention (JITAI) for smoking cessation: Feasibility and acceptability findings. Yang MJ, Sutton SK, Hernandez LM, Jones SR, Wetter DW, Kumar S, Vinci C Addictive behaviors 36037610 Addict Behav 2023 Jan https://www.ncbi.nlm.nih.gov/pubmed/36037610
In the Eye of the Beholder: Gaze and Actions in First Person Video. Li Y, Liu M, Rehg JM IEEE transactions on pattern analysis and machine intelligence 33449877 IEEE Trans Pattern Anal Mach Intell 2023 Jun https://www.ncbi.nlm.nih.gov/pubmed/33449877
Dynamic models of stress-smoking responses based on high-frequency sensor data. Hojjatinia S, Daly ER, Hnat T, Hossain SM, Kumar S, Lagoa CM, Nahum-Shani I, Samiei SA, Spring B, Conroy DE NPJ digital medicine 34815538 NPJ Digit Med 2021 Nov 23 https://www.ncbi.nlm.nih.gov/pubmed/34815538
ReVibe: A Context-assisted Evening Recall Approach to Improve Self-report Adherence. Rabbi M, Li K, Yan HY, Hall K, Klasnja P, Murphy S Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies 34164595 Proc ACM Interact Mob Wearable Ubiquitous Technol 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/34164595
A Robust Functional EM Algorithm for Incomplete Panel Count Data. Moreno A, Wu Z, Yap J, Lam C, Wetter DW, Nahum-Shani I, Dempsey W, Rehg JM Advances in neural information processing systems 34103881 Adv Neural Inf Process Syst 2020 Dec https://www.ncbi.nlm.nih.gov/pubmed/34103881
The mobile assistance for regulating smoking (MARS) micro-randomized trial design protocol. Nahum-Shani I, Potter LN, Lam CY, Yap J, Moreno A, Stoffel R, Wu Z, Wan N, Dempsey W, Kumar S, Ertin E, Murphy SA, Rehg JM, Wetter DW Contemporary clinical trials 34314855 Contemp Clin Trials 2021 Nov https://www.ncbi.nlm.nih.gov/pubmed/34314855
Psychophysiological responses to stress following alcohol intake in social drinkers who are at risk of hazardous drinking. Nakajima M, Kumar S, Wittmers L, Scott MS, al'Absi M Biological psychology 23313460 Biol Psychol 2013 Apr https://www.ncbi.nlm.nih.gov/pubmed/23313460
Left atrial decompression through unidirectional left-to-right interatrial shunt for the treatment of left heart failure: first-in-man experience with the V-Wave device. Amat-Santos IJ, Bergeron S, Bernier M, Allende R, Barbosa Ribeiro H, Urena M, Pibarot P, Verheye S, Keren G, Yaacoby M, Nitzan Y, Abraham WT, Rodés-Cabau J EuroIntervention : journal of EuroPCR in collaboration with the Working Group on Interventional Cardiology of the European Society of Cardiology 24832489 EuroIntervention 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/24832489
Designing adaptive intensive interventions using methods from engineering. Lagoa CM, Bekiroglu K, Lanza ST, Murphy SA Journal of consulting and clinical psychology 25244394 J Consult Clin Psychol 2014 Oct https://www.ncbi.nlm.nih.gov/pubmed/25244394
REEF: Retainable Evaluator Execution Framework. Weimer M, Chen Y, Chun BG, Condie T, Curino C, Douglas C, Lee Y, Majestro T, Malkhi D, Matusevych S, Myers B, Narayanamurthy S, Ramakrishnan R, Rao S, Sears R, Sezgin B, Wang J Proceedings. ACM-SIGMOD International Conference on Management of Data 26819493 Proc ACM SIGMOD Int Conf Manag Data 2015 May-Jun https://www.ncbi.nlm.nih.gov/pubmed/26819493
CAreDroid: Adaptation Framework for Android Context-Aware Applications. Elmalaki S, Wanner L, Srivastava M Proceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking 26834512 Proc Annu Int Conf Mob Comput Netw 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/26834512
Sample size calculations for micro-randomized trials in mHealth. Liao P, Klasnja P, Tewari A, Murphy SA Statistics in medicine 26707831 Stat Med 2016 May 30 https://www.ncbi.nlm.nih.gov/pubmed/26707831
Barriers and Negative Nudges: Exploring Challenges in Food Journaling. Cordeiro F, Epstein DA, Thomaz E, Bales E, Jagannathan AK, Abowd GD, Fogarty J Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference 26894233 Proc SIGCHI Conf Hum Factor Comput Syst 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26894233
Randomised trials for the Fitbit generation. Dempsey W, Liao P, Klasnja P, Nahum-Shani I, Murphy SA Significance (Oxford, England) 26807137 Signif (Oxf) 2015 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/26807137
Visualization of Time-Series Sensor Data to Inform the Design of Just-In-Time Adaptive Stress Interventions. Sharmin M, Raij A, Epstien D, Nahum-Shani I, Beck JG, Vhaduri S, Preston K, Kumar S Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference) 26539566 Proc ACM Int Conf Ubiquitous Comput 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/26539566
Delving into Egocentric Actions. Li Y, Ye Z, Rehg JM Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 26973427 Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/26973427
Action Centered Contextual Bandits. Greenewald K, Tewari A, Klasnja P, Murphy S Advances in neural information processing systems 29225449 Adv Neural Inf Process Syst 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/29225449
Chronodes: Interactive Multifocus Exploration of Event Sequences. Polack PJ Jr, Chen ST, Kahng M, DE Barbaro K, Basole R, Sharmin M, Chau DH ACM transactions on interactive intelligent systems 29515937 ACM Trans Interact Intell Syst 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/29515937
Developing Optimized Adaptive Interventions in Education. Almirall D, Kasari C, McCaffrey DF, Nahum-Shani I Journal of research on educational effectiveness 29552270 J Res Educ Eff 2018 https://www.ncbi.nlm.nih.gov/pubmed/29552270
Standardized Effect Sizes for Preventive Mobile Health Interventions in Micro-randomized Trials. Luers B, Klasnja P, Murphy S Prevention science : the official journal of the Society for Prevention Research 29318443 Prev Sci 2019 Jan https://www.ncbi.nlm.nih.gov/pubmed/29318443
Are We There Yet? Feasibility of Continuous Stress Assessment via Wireless Physiological Sensors. Rahman M, Bari R, Ali AA, Sharmin M, Raij A, Hovsepian K, Hossain SM, Ertin E, Kennedy A, Epstein DH, Preston KL, Jobes M, Beck JG, Kedia S, Ward KD, al'Absi M, Kumar S ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine 25821861 ACM BCB 2014 https://www.ncbi.nlm.nih.gov/pubmed/25821861
Social embeddedness in an online weight management programme is linked to greater weight loss. Poncela-Casasnovas J, Spring B, McClary D, Moller AC, Mukogo R, Pellegrini CA, Coons MJ, Davidson M, Mukherjee S, Nunes Amaral LA Journal of the Royal Society, Interface 25631561 J R Soc Interface 2015 Mar 6 https://www.ncbi.nlm.nih.gov/pubmed/25631561
The effect of reverse remodeling on long-term survival in mildly symptomatic patients with heart failure receiving cardiac resynchronization therapy: results of the REVERSE study. Gold MR, Daubert C, Abraham WT, Ghio S, St John Sutton M, Hudnall JH, Cerkvenik J, Linde C Heart rhythm 25460860 Heart Rhythm 2015 Mar https://www.ncbi.nlm.nih.gov/pubmed/25460860
D-ribose aids heart failure patients with preserved ejection fraction and diastolic dysfunction: a pilot study. Bayram M, St Cyr JA, Abraham WT Therapeutic advances in cardiovascular disease 25701016 Ther Adv Cardiovasc Dis 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/25701016
Finding Significant Stress Episodes in a Discontinuous Time Series of Rapidly Varying Mobile Sensor Data. Sarker H, Tyburski M, Rahman MM, Hovsepian K, Sharmin M, Epstein DH, Preston KL, Furr-Holden CD, Milam A, Nahum-Shani I, al'Absi M, Kumar S Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference 28058409 Proc SIGCHI Conf Hum Factor Comput Syst 2016 May https://www.ncbi.nlm.nih.gov/pubmed/28058409
Effect of Physical Activity on Self-Reported Disability in Older Adults: Results from the LIFE Study. Manini TM, Beavers DP, Pahor M, Guralnik JM, Spring B, Church TS, King AC, Folta SC, Glynn NW, Marsh AP, Gill TM, LIFE study investigators Journal of the American Geriatrics Society 28168689 J Am Geriatr Soc 2017 May https://www.ncbi.nlm.nih.gov/pubmed/28168689
CIDER: Enabling Robustness-Power Tradeoffs on a Computational Eyeglass. Mayberry A, Tun Y, Hu P, Smith-Freedman D, Ganesan D, Marlin B, Salthouse C Proceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking 27042165 Proc Annu Int Conf Mob Comput Netw 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/27042165
RSTensorFlow: GPU Enabled TensorFlow for Deep Learning on Commodity Android Devices. Alzantot M, Wang Y, Ren Z, Srivastava MB MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services 29629431 MobiSys 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/29629431
CIDER: Enhancing the Performance of Computational Eyeglasses. Mayberry A, Tun Y, Hu P, Smith-Freedman D, Marlin B, Salthouse C, Ganesan D Proceedings. Eye Tracking Research & Applications Symposium 29629433 Proc Eye Track Res Appl Symp 2016 Mar https://www.ncbi.nlm.nih.gov/pubmed/29629433
Assessing Time-Varying Causal Effect Moderation in Mobile Health. Boruvka A, Almirall D, Witkiewitz K, Murphy SA Journal of the American Statistical Association 30467446 J Am Stat Assoc 2018 https://www.ncbi.nlm.nih.gov/pubmed/30467446
Yum-Me: A Personalized Nutrient-Based Meal Recommender System. Yang L, Hsieh CK, Yang H, Pollak JP, Dell N, Belongie S, Cole C, Estrin D ACM transactions on information systems 30464375 ACM Trans Inf Syst 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/30464375
iSurvive: An Interpretable, Event-time Prediction Model for mHealth. Dempsey WH, Moreno A, Scott CK, Dennis ML, Gustafson DH, Murphy SA, Rehg JM Proceedings of machine learning research 30906932 Proc Mach Learn Res 2017 https://www.ncbi.nlm.nih.gov/pubmed/30906932
Engagement With a Behavior Change App for Alcohol Reduction: Data Visualization for Longitudinal Observational Study. Bell L, Garnett C, Qian T, Perski O, Williamson E, Potts HW Journal of medical Internet research 33306026 J Med Internet Res 2020 Dec 11 https://www.ncbi.nlm.nih.gov/pubmed/33306026
Artificial intelligence decision-making in mobile health. Menictas M, Rabbi M, Klasnja P, Murphy S The biochemist 33828355 Biochem (Lond) 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/33828355
Off-Policy Estimation of Long-Term Average Outcomes with Applications to Mobile Health. Liao P, Klasnja P, Murphy S Journal of the American Statistical Association 33814653 J Am Stat Assoc 2021 https://www.ncbi.nlm.nih.gov/pubmed/33814653
Adding data provenance support to Apache Spark. Interlandi M, Ekmekji A, Shah K, Gulzar MA, Tetali SD, Kim M, Millstein T, Condie T The VLDB journal : very large data bases : a publication of the VLDB Endowment 31007500 VLDB J 2018 Oct https://www.ncbi.nlm.nih.gov/pubmed/31007500
Sample size considerations for comparing dynamic treatment regimens in a sequential multiple-assignment randomized trial with a continuous longitudinal outcome. Seewald NJ, Kidwell KM, Nahum-Shani I, Wu T, McKay JR, Almirall D Statistical methods in medical research 31571526 Stat Methods Med Res 2020 Jul https://www.ncbi.nlm.nih.gov/pubmed/31571526
How Notifications Affect Engagement With a Behavior Change App: Results From a Micro-Randomized Trial. Bell L, Garnett C, Bao Y, Cheng Z, Qian T, Perski O, Potts HWW, Williamson E JMIR mHealth and uHealth 37294612 JMIR Mhealth Uhealth 2023 Jun 9 https://www.ncbi.nlm.nih.gov/pubmed/37294612
mORAL: An mHealth Model for Inferring Oral Hygiene Behaviors in-the-wild Using Wrist-worn Inertial Sensors. Akther S, Saleheen N, Samiei SA, Shetty V, Ertin E, Kumar S Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies 40144218 Proc ACM Interact Mob Wearable Ubiquitous Technol 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/40144218
Gaze-enabled Egocentric Video Summarization via Constrained Submodular Maximization. Xut J, Mukherjee L, Li Y, Warner J, Rehg JM, Singht V Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 26973428 Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/26973428
Big Data Analytics with Datalog Queries on Spark. Shkapsky A, Yang M, Interlandi M, Chiu H, Condie T, Zaniolo C Proceedings. ACM-SIGMOD International Conference on Management of Data 28626296 Proc ACM SIGMOD Int Conf Manag Data 2016 Jun-Jul https://www.ncbi.nlm.nih.gov/pubmed/28626296
Domain Adaptation Methods for Improving Lab-to-field Generalization of Cocaine Detection using Wearable ECG. Natarajan A, Angarita G, Gaiser E, Malison R, Ganesan D, Marlin BM Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference) 28090605 Proc ACM Int Conf Ubiquitous Comput 2016 Sep https://www.ncbi.nlm.nih.gov/pubmed/28090605
A SMART data analysis method for constructing adaptive treatment strategies for substance use disorders. Nahum-Shani I, Ertefaie A, Lu XL, Lynch KG, McKay JR, Oslin DW, Almirall D Addiction (Abingdon, England) 28029718 Addiction 2017 May https://www.ncbi.nlm.nih.gov/pubmed/28029718
Optimizing Interactive Development of Data-Intensive Applications. Interlandi M, Tetali SD, Gulzar MA, Noor J, Condie T, Kim M, Millstein T Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference) 28405637 Proc ACM Symp Cloud Comput 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/28405637
Laissez-Faire : Fully Asymmetric Backscatter Communication. Hu P, Zhang P, Ganesan D Proceedings of ACM SIGCOMM ... Conference. ACM SIGCOMM Conference 28286885 Proc ACM SIGCOMM Conf 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/28286885
Continuous representations of brain connectivity using spatial point processes. Moyer D, Gutman BA, Faskowitz J, Jahanshad N, Thompson PM Medical image analysis 28487128 Med Image Anal 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/28487128
Diverging volumetric trajectories following pediatric traumatic brain injury. Dennis EL, Faskowitz J, Rashid F, Babikian T, Mink R, Babbitt C, Johnson J, Giza CC, Jahanshad N, Thompson PM, Asarnow RF NeuroImage. Clinical 28507895 Neuroimage Clin 2017 https://www.ncbi.nlm.nih.gov/pubmed/28507895
Boosting brain connectome classification accuracy in Alzheimer's disease using higher-order singular value decomposition. Zhan L, Liu Y, Wang Y, Zhou J, Jahanshad N, Ye J, Thompson PM, Alzheimer's Disease Neuroimaging Initiative (ADNI) Frontiers in neuroscience 26257601 Front Neurosci 2015 https://www.ncbi.nlm.nih.gov/pubmed/26257601
BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks. Richiardi J, Altmann A, Milazzo AC, Chang C, Chakravarty MM, Banaschewski T, Barker GJ, Bokde AL, Bromberg U, Büchel C, Conrod P, Fauth-Bühler M, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Lemaître H, Mann KF, Martinot JL, Nees F, Paus T, Pausova Z, Rietschel M, Robbins TW, Smolka MN, Spanagel R, Ströhle A, Schumann G, Hawrylycz M, Poline JB, Greicius MD, IMAGEN consortium Science (New York, N.Y.) 26068849 Science 2015 Jun 12 https://www.ncbi.nlm.nih.gov/pubmed/26068849
Neural correlates of cognitive function and symptoms in attention-deficit/hyperactivity disorder in adults. Duan K, Chen J, Calhoun VD, Lin D, Jiang W, Franke B, Buitelaar JK, Hoogman M, Arias-Vasquez A, Turner JA, Liu J NeuroImage. Clinical 30013920 Neuroimage Clin 2018 https://www.ncbi.nlm.nih.gov/pubmed/30013920
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. Carass A, Cuzzocreo JL, Han S, Hernandez-Castillo CR, Rasser PE, Ganz M, Beliveau V, Dolz J, Ben Ayed I, Desrosiers C, Thyreau B, Romero JE, Coupé P, Manjón JV, Fonov VS, Collins DL, Ying SH, Onyike CU, Crocetti D, Landman BA, Mostofsky SH, Thompson PM, Prince JL NeuroImage 30099076 Neuroimage 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/30099076
HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS. Wu J, Zhang J, Shi J, Chen K, Caselli RJ, Reiman EM, Wang Y Proceedings. IEEE International Symposium on Biomedical Imaging 30123414 Proc IEEE Int Symp Biomed Imaging 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/30123414
Classification of Major Depressive Disorder Using Vertex-Wise Brain Sulcal Depth, Curvature, and Thickness with a Deep and a Shallow Learning Model. Goya-Maldonado R, Erwin-Grabner T, Zeng LL, Ching CRK, Aleman A, Amod AR, Basgoze Z, Benedetti F, Besteher B, Brosch K, Bülow R, Colle R, Connolly CG, Corruble E, Couvy-Duchesne B, Cullen K, Dannlowski U, Davey CG, Dols A, Ernsting J, Evans JW, Fisch L, Fuentes-Claramonte P, Gonul AS, Gotlib IH, Grabe HJ, Groenewold NA, Grotegerd D, Hahn T, Hamilton JP, Han LKM, Harrison BJ, Ho TC, Jahanshad N, Jamieson AJ, Karuk A, Kircher T, Klimes-Dougan B, Koopowitz SM, Lancaster T, Leenings R, Li M, Linden DEJ, MacMaster FP, Mehler DMA, Meinert S, Melloni E, Mueller BA, Mwangi B, Nenadić I, Ojha A, Okamoto Y, Oudega ML, Penninx BWJH, Poletti S, Pomarol-Clotet E, Portella MJ, Pozzi E, Radua J, Rodríguez-Cano E, Sacchet MD, Salvador R, Schrantee A, Sim K, Soares JC, Solanes A, Stein DJ, Stein F, Stolicyn A, Thomopoulos SI, Toenders YJ, Uyar-Demir A, Vieta E, Vives-Gilabert Y, Völzke H, Walter M, Whalley HC, Whittle S, Winter N, Wittfeld K, Wright MJ, Wu MJ, Yang TT, Zarate C, Veltman DJ, Schmaal L, Thompson PM, ENIGMA Major Depressive Disorder working group ArXiv 39975425 ArXiv 2025 Jan 24 https://www.ncbi.nlm.nih.gov/pubmed/39975425
Hierarchical Neurocognitive Model of Externalizing and Internalizing Comorbidity. Jia T, Xie C, Xiang S, Zheng Y, Shen C, Li Y, Cheng W, Vaidya N, Zhang Z, Robinson L, Winterer J, Zhang Y, King S, Barker G, Bokde A, Brühl R, Kebir H, Wei D, Artiges E, Bobou M, Broulidakis M, Banaschewski T, Becker A, Buchel C, Conrod P, Fadai T, Flor H, Grigis A, Grimmer Y, Garavan H, Gowland P, Heinz A, Insensee C, Kappel V, Lemaître H, Martinot JL, Martinot ML, Noort B, Nees F, Orfanos DP, Penttilä J, Poustka L, Frohner J, Schmidt U, Sinclair J, Smolka M, Struve M, Walter H, Whelan R, Qiu J, Xie P, Sahakian B, Robbins T, Desrivières S, Schumann G, Feng J Research square 39866873 Res Sq 2025 Jan 10 https://www.ncbi.nlm.nih.gov/pubmed/39866873
ASSOCIATIONS BETWEEN EPILEPSY-RELATED POLYGENIC RISK AND BRAIN MORPHOLOGY IN CHILDHOOD. Ngo A, Liu L, Larivière S, Kebets V, Fett S, Weber CF, Royer J, Yu E, Rodríguez-Cruces R, Zhang Z, Ooi LQR, Thomas Yeo BT, Frauscher B, Paquola C, Caligiuri ME, Gambardella A, Concha L, Keller SS, Cendes F, Yasuda CL, Bonilha L, Gleichgerrcht E, Focke NK, Kotikalapudi R, O'Brien TJ, Sinclair B, Vivash L, Desmond PM, Lui E, Vaudano AE, Meletti S, Kälviäinen R, Soltanian-Zadeh H, Winston GP, Tiwari VK, Kreilkamp BAK, Lenge M, Guerrini R, Hamandi K, Rüber T, Bauer T, Devinsky O, Striano P, Kaestner E, Hatton SN, Caciagli L, Kirschner M, Duncan JS, Thompson PM, ENIGMA Consortium Epilepsy Working Group, McDonald CR, Sisodiya SM, Bernasconi N, Bernasconi A, Gan-Or Z, Bernhardt BC bioRxiv : the preprint server for biology 39868179 bioRxiv 2025 Jan 17 https://www.ncbi.nlm.nih.gov/pubmed/39868179
ENIGMA-Meditation: Worldwide Consortium for Neuroscientific Investigations of Meditation Practices. Ganesan S, Barrios FA, Batta I, Bauer CCC, Braver TS, Brewer JA, Brown KW, Cahn R, Cain JA, Calhoun VD, Cao L, Chetelat G, Ching CRK, Creswell JD, Dagnino PC, Davanger S, Davidson RJ, Deco G, Dutcher JM, Escrichs A, Eyler LT, Fani N, Farb NAS, Fialoke S, Fresco DM, Garg R, Garland EL, Goldin P, Hafeman DM, Jahanshad N, Kang Y, Khalsa SS, Kirlic N, Lazar SW, Lutz A, McDermott TJ, Pagnoni G, Piguet C, Prakash RS, Rahrig H, Reggente N, Saccaro LF, Sacchet MD, Siegle GJ, Tang YY, Thomopoulos SI, Thompson PM, Torske A, Treves IN, Tripathi V, Tsuchiyagaito A, Turner MD, Vago DR, Valk S, Zeidan F, Zalesky A, Turner JA, King AP Biological psychiatry. Cognitive neuroscience and neuroimaging 39515581 Biol Psychiatry Cogn Neurosci Neuroimaging 2025 Apr https://www.ncbi.nlm.nih.gov/pubmed/39515581
Image-Based Meta- and Mega-Analysis (IBMMA): A Unified Framework for Large-Scale, Multi-Site, Neuroimaging Data Analysis. Steele N, Morey RA, Hussain A, Russell C, Suarez-Jimenez B, Pozzi E, Jameei H, Schmaal L, Veer IM, Waller L, Jahanshad N, Thomopoulos SI, Salminen LE, Olff M, Frijling JL, Veltman DJ, Koch SBJ, Nawijn L, van Zuiden M, Wang L, Zhu Y, Li G, Stein DJ, Ipser J, Neria Y, Zhu X, Ravid O, Zilcha-Mano S, Lazarov A, Huggins AA, Stevens JS, Ressler K, Jovanovic T, van Rooij SJH, Fani N, Mueller SC, Hudson AR, Daniels JK, Sierk A, Manthey A, Walter H, van der Wee NJA, van der Werff SJA, Vermeiren RRJM, Schmahl C, Herzog JI, Rektor I, Říha P, Kaufman ML, Lebois LAM, Baker JT, Rosso IM, Olson EA, King A, Liberzon I, Angstadt M, Davenport ND, Disner SG, Sponheim SR, Straube T, Hofmann D, Lu G, Qi R, Wang X, Kunch A, Xie H, Quidé Y, El-Hage W, Lissek S, Berg H, Bruce SE, Cisler J, Ross M, Herringa RJ, Grupe DW, Nitschke JB, Davidson RJ, Larson C, deRoon-Cassini TA, Tomas CW, Fitzgerald JM, Elman J, Panizzon M, Franz CE, Lyons MJ, Kremen WS, Feola B, Blackford JU, Olatunji BO, May G, Nelson SM, Gordon EM, Abdallah CG, Lanius R, Densmore M, Théberge J, Neufeld RWJ, Thompson PM, Sun D bioRxiv : the preprint server for biology 40667083 bioRxiv 2025 Jun 17 https://www.ncbi.nlm.nih.gov/pubmed/40667083
Accelerating Heritability, Genetic Correlation, and Genome-Wide Association Imaging Genetic Analyses in Complex Pedigrees. Donohue B, Gao S, Nichols TE, Adhikari BM, Ma Y, Jahanshad N, Thompson PM, McMahon FJ, Humphries EM, Burroughs W, Ament SA, Mitchell BD, Ma T, Chen S, Medland SE, Blangero J, Hong LE, Kochunov P Human brain mapping 39593222 Hum Brain Mapp 2024 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/39593222
Ten years of enhancing neuro-imaging genetics through meta-analysis: An overview from the ENIGMA Genetics Working Group. Medland SE, Grasby KL, Jahanshad N, Painter JN, Colodro-Conde L, Bralten J, Hibar DP, Lind PA, Pizzagalli F, Thomopoulos SI, Stein JL, Franke B, Martin NG, Thompson PM, ENIGMA Genetics Working Group Human brain mapping 33300665 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33300665
Substance Use Initiation, Particularly Alcohol, in Drug-Naive Adolescents: Possible Predictors and Consequences From a Large Cohort Naturalistic Study. Ivanov I, Parvaz MA, Velthorst E, Shaik RB, Sandin S, Gan G, Spechler P, Albaugh MD, Chaarani B, Mackey S, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Artiges E, Lemaitre H, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Garavan H, IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 33011213 J Am Acad Child Adolesc Psychiatry 2021 May https://www.ncbi.nlm.nih.gov/pubmed/33011213
A Geometric Framework for Feature Mappings in Multimodal Fusion of Brain Image Data. Zhang W, Mi L, Thompson PM, Wang Y Information processing in medical imaging : proceedings of the ... conference 31871388 Inf Process Med Imaging 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/31871388
Effects of ketamine and midazolam on resting state connectivity and comparison with ENIGMA connectivity deficit patterns in schizophrenia. Adhikari BM, Dukart J, Hipp JF, Forsyth A, McMillan R, Muthukumaraswamy SD, Ryan MC, Hong LE, Eickhoff SB, Jahandshad N, Thompson PM, Rowland LM, Kochunov P Human brain mapping 31633254 Hum Brain Mapp 2020 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/31633254
A Developmental Perspective on Facets of Impulsivity and Brain Activity Correlates From Adolescence to Adulthood. Kaiser A, Holz NE, Banaschewski T, Baumeister S, Bokde ALW, Desrivières S, Flor H, Fröhner JH, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Artiges E, Millenet S, Orfanos DP, Poustka L, Schwarz E, Smolka MN, Walter H, Whelan R, Schumann G, Brandeis D, Nees F, IMAGEN Consortium Biological psychiatry. Cognitive neuroscience and neuroimaging 35182817 Biol Psychiatry Cogn Neurosci Neuroimaging 2022 Nov https://www.ncbi.nlm.nih.gov/pubmed/35182817
Global urbanicity is associated with brain and behaviour in young people. Xu J, Liu X, Li Q, Goldblatt R, Qin W, Liu F, Chu C, Luo Q, Ing A, Guo L, Liu N, Liu H, Huang C, Cheng J, Wang M, Geng Z, Zhu W, Zhang B, Liao W, Qiu S, Zhang H, Xu X, Yu Y, Gao B, Han T, Cui G, Chen F, Xian J, Li J, Zhang J, Zuo XN, Wang D, Shen W, Miao Y, Yuan F, Lui S, Zhang X, Xu K, Zhang L, Ye Z, Banaschewski T, Barker GJ, Bokde ALW, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Artiges E, Nees F, Orfanos DP, Lemaitre H, Paus T, Poustka L, Robinson L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Winterer J, Patrick K, Calhoun V, Li MJ, Liang M, Gong P, Barker ED, Clinton N, Marquand A, Yu L, Yu C, Schumann G, CHIMGEN, IMAGEN Consortia Nature human behaviour 34711977 Nat Hum Behav 2022 Feb https://www.ncbi.nlm.nih.gov/pubmed/34711977
The Enhancing NeuroImaging Genetics through Meta-Analysis Consortium: 10 Years of Global Collaborations in Human Brain Mapping. Thompson PM, Jahanshad N, Schmaal L, Turner JA, Winkler AM, Thomopoulos SI, Egan GF, Kochunov P Human brain mapping 34612558 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/34612558
Comparing empirical kinship derived heritability for imaging genetics traits in the UK biobank and human connectome project. Gao S, Donohue B, Hatch KS, Chen S, Ma T, Ma Y, Kvarta MD, Bruce H, Adhikari BM, Jahanshad N, Thompson PM, Blangero J, Hong LE, Medland SE, Ganjgahi H, Nichols TE, Kochunov P NeuroImage 34740793 Neuroimage 2021 Dec 15 https://www.ncbi.nlm.nih.gov/pubmed/34740793
A model-based approach to assess reproducibility for large-scale high-throughput MRI-based studies. Jiao Z, Lai Y, Kang J, Gong W, Ma L, Jia T, Xie C, Xiang S, Cheng W, Heinz A, Desrivières S, Schumann G, IMAGEN Consortium, Sun F, Feng J NeuroImage 35398282 Neuroimage 2022 Jul 15 https://www.ncbi.nlm.nih.gov/pubmed/35398282
Genetic variants associated with longitudinal changes in brain structure across the lifespan. Brouwer RM, Klein M, Grasby KL, Schnack HG, Jahanshad N, Teeuw J, Thomopoulos SI, Sprooten E, Franz CE, Gogtay N, Kremen WS, Panizzon MS, Olde Loohuis LM, Whelan CD, Aghajani M, Alloza C, Alnæs D, Artiges E, Ayesa-Arriola R, Barker GJ, Bastin ME, Blok E, Bøen E, Breukelaar IA, Bright JK, Buimer EEL, Bülow R, Cannon DM, Ciufolini S, Crossley NA, Damatac CG, Dazzan P, de Mol CL, de Zwarte SMC, Desrivières S, Díaz-Caneja CM, Doan NT, Dohm K, Fröhner JH, Goltermann J, Grigis A, Grotegerd D, Han LKM, Harris MA, Hartman CA, Heany SJ, Heindel W, Heslenfeld DJ, Hohmann S, Ittermann B, Jansen PR, Janssen J, Jia T, Jiang J, Jockwitz C, Karali T, Keeser D, Koevoets MGJC, Lenroot RK, Malchow B, Mandl RCW, Medel V, Meinert S, Morgan CA, Mühleisen TW, Nabulsi L, Opel N, de la Foz VO, Overs BJ, Paillère Martinot ML, Redlich R, Marques TR, Repple J, Roberts G, Roshchupkin GV, Setiaman N, Shumskaya E, Stein F, Sudre G, Takahashi S, Thalamuthu A, Tordesillas-Gutiérrez D, van der Lugt A, van Haren NEM, Wardlaw JM, Wen W, Westeneng HJ, Wittfeld K, Zhu AH, Zugman A, Armstrong NJ, Bonfiglio G, Bralten J, Dalvie S, Davies G, Di Forti M, Ding L, Donohoe G, Forstner AJ, Gonzalez-Peñas J, Guimaraes JPOFT, Homuth G, Hottenga JJ, Knol MJ, Kwok JBJ, Le Hellard S, Mather KA, Milaneschi Y, Morris DW, Nöthen MM, Papiol S, Rietschel M, Santoro ML, Steen VM, Stein JL, Streit F, Tankard RM, Teumer A, van 't Ent D, van der Meer D, van Eijk KR, Vassos E, Vázquez-Bourgon J, Witt SH, IMAGEN Consortium, Adams HHH, Agartz I, Ames D, Amunts K, Andreassen OA, Arango C, Banaschewski T, Baune BT, Belangero SI, Bokde ALW, Boomsma DI, Bressan RA, Brodaty H, Buitelaar JK, Cahn W, Caspers S, Cichon S, Crespo-Facorro B, Cox SR, Dannlowski U, Elvsåshagen T, Espeseth T, Falkai PG, Fisher SE, Flor H, Fullerton JM, Garavan H, Gowland PA, Grabe HJ, Hahn T, Heinz A, Hillegers M, Hoare J, Hoekstra PJ, Ikram MA, Jackowski AP, Jansen A, Jönsson EG, Kahn RS, Kircher T, Korgaonkar MS, Krug A, Lemaitre H, Malt UF, Martinot JL, McDonald C, Mitchell PB, Muetzel RL, Murray RM, Nees F, Nenadić I, Oosterlaan J, Ophoff RA, Pan PM, Penninx BWJH, Poustka L, Sachdev PS, Salum GA, Schofield PR, Schumann G, Shaw P, Sim K, Smolka MN, Stein DJ, Trollor JN, van den Berg LH, Veldink JH, Walter H, Westlye LT, Whelan R, White T, Wright MJ, Medland SE, Franke B, Thompson PM, Hulshoff Pol HE Nature neuroscience 35383335 Nat Neurosci 2022 Apr https://www.ncbi.nlm.nih.gov/pubmed/35383335
Psychotic Like Experiences in Healthy Adolescents are Underpinned by Lower Fronto-Temporal Cortical Gyrification: a Study from the IMAGEN Consortium. Maitra R, Horne CM, O'Daly O, Papanastasiou E, Gaser C, IMAGEN list of authors, IMAGEN Consortium Schizophrenia bulletin 36226895 Schizophr Bull 2023 Mar 15 https://www.ncbi.nlm.nih.gov/pubmed/36226895
Genetic correlations between subcortical brain volumes and psychiatric disorders. Ohi K, Shimada T, Kataoka Y, Yasuyama T, Kawasaki Y, Shioiri T, Thompson PM The British journal of psychiatry : the journal of mental science 32000869 Br J Psychiatry 2020 May https://www.ncbi.nlm.nih.gov/pubmed/32000869
Genetic contributors to risk of schizophrenia in the presence of a 22q11.2 deletion. Cleynen I, Engchuan W, Hestand MS, Heung T, Holleman AM, Johnston HR, Monfeuga T, McDonald-McGinn DM, Gur RE, Morrow BE, Swillen A, Vorstman JAS, Bearden CE, Chow EWC, van den Bree M, Emanuel BS, Vermeesch JR, Warren ST, Owen MJ, Chopra P, Cutler DJ, Duncan R, Kotlar AV, Mulle JG, Voss AJ, Zwick ME, Diacou A, Golden A, Guo T, Lin JR, Wang T, Zhang Z, Zhao Y, Marshall C, Merico D, Jin A, Lilley B, Salmons HI, Tran O, Holmans P, Pardinas A, Walters JTR, Demaerel W, Boot E, Butcher NJ, Costain GA, Lowther C, Evers R, van Amelsvoort TAMJ, van Duin E, Vingerhoets C, Breckpot J, Devriendt K, Vergaelen E, Vogels A, Crowley TB, McGinn DE, Moss EM, Sharkus RJ, Unolt M, Zackai EH, Calkins ME, Gallagher RS, Gur RC, Tang SX, Fritsch R, Ornstein C, Repetto GM, Breetvelt E, Duijff SN, Fiksinski A, Moss H, Niarchou M, Murphy KC, Prasad SE, Daly EM, Gudbrandsen M, Murphy CM, Murphy DG, Buzzanca A, Fabio FD, Digilio MC, Pontillo M, Marino B, Vicari S, Coleman K, Cubells JF, Ousley OY, Carmel M, Gothelf D, Mekori-Domachevsky E, Michaelovsky E, Weinberger R, Weizman A, Kushan L, Jalbrzikowski M, Armando M, Eliez S, Sandini C, Schneider M, Béna FS, Antshel KM, Fremont W, Kates WR, Belzeaux R, Busa T, Philip N, Campbell LE, McCabe KL, Hooper SR, Schoch K, Shashi V, Simon TJ, Tassone F, Arango C, Fraguas D, García-Miñaúr S, Morey-Canyelles J, Rosell J, Suñer DH, Raventos-Simic J, International 22q11.2DS Brain and Behavior Consortium, Epstein MP, Williams NM, Bassett AS Molecular psychiatry 32015465 Mol Psychiatry 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/32015465
Brain structural covariance networks in obsessive-compulsive disorder: a graph analysis from the ENIGMA Consortium. Yun JY, Boedhoe PSW, Vriend C, Jahanshad N, Abe Y, Ameis SH, Anticevic A, Arnold PD, Batistuzzo MC, Benedetti F, Beucke JC, Bollettini I, Bose A, Brem S, Calvo A, Cheng Y, Cho KIK, Ciullo V, Dallaspezia S, Denys D, Feusner JD, Fouche JP, Giménez M, Gruner P, Hibar DP, Hoexter MQ, Hu H, Huyser C, Ikari K, Kathmann N, Kaufmann C, Koch K, Lazaro L, Lochner C, Marques P, Marsh R, Martínez-Zalacaín I, Mataix-Cols D, Menchón JM, Minuzzi L, Morgado P, Moreira P, Nakamae T, Nakao T, Narayanaswamy JC, Nurmi EL, O'Neill J, Piacentini J, Piras F, Piras F, Reddy YCJ, Sato JR, Simpson HB, Soreni N, Soriano-Mas C, Spalletta G, Stevens MC, Szeszko PR, Tolin DF, Venkatasubramanian G, Walitza S, Wang Z, van Wingen GA, Xu J, Xu X, Zhao Q, ENIGMA-OCD working group, Thompson PM, Stein DJ, van den Heuvel OA, Kwon JS Brain : a journal of neurology 32040561 Brain 2020 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/32040561
The Relationship Between White Matter Microstructure and General Cognitive Ability in Patients With Schizophrenia and Healthy Participants in the ENIGMA Consortium. Holleran L, Kelly S, Alloza C, Agartz I, Andreassen OA, Arango C, Banaj N, Calhoun V, Cannon D, Carr V, Corvin A, Glahn DC, Gur R, Hong E, Hoschl C, Howells FM, James A, Janssen J, Kochunov P, Lawrie SM, Liu J, Martinez C, McDonald C, Morris D, Mothersill D, Pantelis C, Piras F, Potkin S, Rasser PE, Roalf D, Rowland L, Satterthwaite T, Schall U, Spalletta G, Spaniel F, Stein DJ, Uhlmann A, Voineskos A, Zalesky A, van Erp TGM, Turner JA, Deary IJ, Thompson PM, Jahanshad N, Donohoe G The American journal of psychiatry 32212855 Am J Psychiatry 2020 Jun 1 https://www.ncbi.nlm.nih.gov/pubmed/32212855
Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study. Tu Y, Mi L, Zhang W, Zhang H, Zhang J, Fan Y, Goradia D, Chen K, Caselli RJ, Reiman EM, Gu X, Wang Y, Alzheimer’s Disease Neuroimaging Initiative Neuroinformatics 32253701 Neuroinformatics 2020 Oct https://www.ncbi.nlm.nih.gov/pubmed/32253701
ENIGMA-DTI: Translating reproducible white matter deficits into personalized vulnerability metrics in cross-diagnostic psychiatric research. Kochunov P, Hong LE, Dennis EL, Morey RA, Tate DF, Wilde EA, Logue M, Kelly S, Donohoe G, Favre P, Houenou J, Ching CRK, Holleran L, Andreassen OA, van Velzen LS, Schmaal L, Villalón-Reina JE, Bearden CE, Piras F, Spalletta G, van den Heuvel OA, Veltman DJ, Stein DJ, Ryan MC, Tan Y, van Erp TGM, Turner JA, Haddad L, Nir TM, Glahn DC, Thompson PM, Jahanshad N Human brain mapping 32301246 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32301246
Neuroanatomical heterogeneity and homogeneity in individuals at clinical high risk for psychosis. Baldwin H, Radua J, Antoniades M, Haas SS, Frangou S, Agartz I, Allen P, Andreassen OA, Atkinson K, Bachman P, Baeza I, Bartholomeusz CF, Chee MWL, Colibazzi T, Cooper RE, Corcoran CM, Cropley VL, Ebdrup BH, Fortea A, Glenthøj LB, Hamilton HK, Haut KM, Hayes RA, He Y, Heekeren K, Kaess M, Kasai K, Katagiri N, Kim M, Kindler J, Klaunig MJ, Koike S, Koppel A, Kristensen TD, Bin Kwak Y, Kwon JS, Lawrie SM, Lebedeva I, Lee J, Lin A, Loewy RL, Mathalon DH, Michel C, Mizrahi R, Møller P, Nelson B, Nemoto T, Nordholm D, Omelchenko MA, Pantelis C, Raghava JM, Røssberg JI, Rössler W, Salisbury DF, Sasabayashi D, Schall U, Smigielski L, Sugranyes G, Suzuki M, Takahashi T, Tamnes CK, Tang J, Theodoridou A, Thomopoulos SI, Tomyshev AS, Uhlhaas PJ, Værnes TG, van Amelsvoort TAMJ, Van Erp TGM, Waltz JA, Westlye LT, Wood SJ, Zhou JH, McGuire P, Thompson PM, Jalbrzikowski M, Hernaus D, Fusar-Poli P, ENIGMA Clinical High Risk for Psychosis Working Group Translational psychiatry 35882855 Transl Psychiatry 2022 Jul 26 https://www.ncbi.nlm.nih.gov/pubmed/35882855
A comparison of methods to harmonize cortical thickness measurements across scanners and sites. Sun D, Rakesh G, Haswell CC, Logue M, Baird CL, O'Leary EN, Cotton AS, Xie H, Tamburrino M, Chen T, Dennis EL, Jahanshad N, Salminen LE, Thomopoulos SI, Rashid F, Ching CRK, Koch SBJ, Frijling JL, Nawijn L, van Zuiden M, Zhu X, Suarez-Jimenez B, Sierk A, Walter H, Manthey A, Stevens JS, Fani N, van Rooij SJH, Stein M, Bomyea J, Koerte IK, Choi K, van der Werff SJA, Vermeiren RRJM, Herzog J, Lebois LAM, Baker JT, Olson EA, Straube T, Korgaonkar MS, Andrew E, Zhu Y, Li G, Ipser J, Hudson AR, Peverill M, Sambrook K, Gordon E, Baugh L, Forster G, Simons RM, Simons JS, Magnotta V, Maron-Katz A, du Plessis S, Disner SG, Davenport N, Grupe DW, Nitschke JB, deRoon-Cassini TA, Fitzgerald JM, Krystal JH, Levy I, Olff M, Veltman DJ, Wang L, Neria Y, De Bellis MD, Jovanovic T, Daniels JK, Shenton M, van de Wee NJA, Schmahl C, Kaufman ML, Rosso IM, Sponheim SR, Hofmann DB, Bryant RA, Fercho KA, Stein DJ, Mueller SC, Hosseini B, Phan KL, McLaughlin KA, Davidson RJ, Larson CL, May G, Nelson SM, Abdallah CG, Gomaa H, Etkin A, Seedat S, Harpaz-Rotem I, Liberzon I, van Erp TGM, Quidé Y, Wang X, Thompson PM, Morey RA NeuroImage 35917919 Neuroimage 2022 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/35917919
Volume of subcortical brain regions in social anxiety disorder: mega-analytic results from 37 samples in the ENIGMA-Anxiety Working Group. Groenewold NA, Bas-Hoogendam JM, Amod AR, Laansma MA, Van Velzen LS, Aghajani M, Hilbert K, Oh H, Salas R, Jackowski AP, Pan PM, Salum GA, Blair JR, Blair KS, Hirsch J, Pantazatos SP, Schneier FR, Talati A, Roelofs K, Volman I, Blanco-Hinojo L, Cardoner N, Pujol J, Beesdo-Baum K, Ching CRK, Thomopoulos SI, Jansen A, Kircher T, Krug A, Nenadić I, Stein F, Dannlowski U, Grotegerd D, Lemke H, Meinert S, Winter A, Erb M, Kreifelts B, Gong Q, Lui S, Zhu F, Mwangi B, Soares JC, Wu MJ, Bayram A, Canli M, Tükel R, Westenberg PM, Heeren A, Cremers HR, Hofmann D, Straube T, Doruyter AGG, Lochner C, Peterburs J, Van Tol MJ, Gur RE, Kaczkurkin AN, Larsen B, Satterthwaite TD, Filippi CA, Gold AL, Harrewijn A, Zugman A, Bülow R, Grabe HJ, Völzke H, Wittfeld K, Böhnlein J, Dohm K, Kugel H, Schrammen E, Zwanzger P, Leehr EJ, Sindermann L, Ball TM, Fonzo GA, Paulus MP, Simmons A, Stein MB, Klumpp H, Phan KL, Furmark T, Månsson KNT, Manzouri A, Avery SN, Blackford JU, Clauss JA, Feola B, Harper JC, Sylvester CM, Lueken U, Veltman DJ, Winkler AM, Jahanshad N, Pine DS, Thompson PM, Stein DJ, Van der Wee NJA Molecular psychiatry 36653677 Mol Psychiatry 2023 Mar https://www.ncbi.nlm.nih.gov/pubmed/36653677
Brain ageing in schizophrenia: evidence from 26 international cohorts via the ENIGMA Schizophrenia consortium. Constantinides C, Han LKM, Alloza C, Antonucci LA, Arango C, Ayesa-Arriola R, Banaj N, Bertolino A, Borgwardt S, Bruggemann J, Bustillo J, Bykhovski O, Calhoun V, Carr V, Catts S, Chung YC, Crespo-Facorro B, Díaz-Caneja CM, Donohoe G, Plessis SD, Edmond J, Ehrlich S, Emsley R, Eyler LT, Fuentes-Claramonte P, Georgiadis F, Green M, Guerrero-Pedraza A, Ha M, Hahn T, Henskens FA, Holleran L, Homan S, Homan P, Jahanshad N, Janssen J, Ji E, Kaiser S, Kaleda V, Kim M, Kim WS, Kirschner M, Kochunov P, Kwak YB, Kwon JS, Lebedeva I, Liu J, Mitchie P, Michielse S, Mothersill D, Mowry B, de la Foz VO, Pantelis C, Pergola G, Piras F, Pomarol-Clotet E, Preda A, Quidé Y, Rasser PE, Rootes-Murdy K, Salvador R, Sangiuliano M, Sarró S, Schall U, Schmidt A, Scott RJ, Selvaggi P, Sim K, Skoch A, Spalletta G, Spaniel F, Thomopoulos SI, Tomecek D, Tomyshev AS, Tordesillas-Gutiérrez D, van Amelsvoort T, Vázquez-Bourgon J, Vecchio D, Voineskos A, Weickert CS, Weickert T, Thompson PM, Schmaal L, van Erp TGM, Turner J, Cole JH, ENIGMA Schizophrenia Consortium, Dima D, Walton E Molecular psychiatry 36494461 Mol Psychiatry 2023 Mar https://www.ncbi.nlm.nih.gov/pubmed/36494461
In vivo white matter microstructure in adolescents with early-onset psychosis: a multi-site mega-analysis. Barth C, Kelly S, Nerland S, Jahanshad N, Alloza C, Ambrogi S, Andreassen OA, Andreou D, Arango C, Baeza I, Banaj N, Bearden CE, Berk M, Bohman H, Castro-Fornieles J, Chye Y, Crespo-Facorro B, de la Serna E, Díaz-Caneja CM, Gurholt TP, Hegarty CE, James A, Janssen J, Johannessen C, Jönsson EG, Karlsgodt KH, Kochunov P, Lois NG, Lundberg M, Myhre AM, Pascual-Diaz S, Piras F, Smelror RE, Spalletta G, Stokkan TS, Sugranyes G, Suo C, Thomopoulos SI, Tordesillas-Gutiérrez D, Vecchio D, Wedervang-Resell K, Wortinger LA, Thompson PM, Agartz I Molecular psychiatry 36510004 Mol Psychiatry 2023 Mar https://www.ncbi.nlm.nih.gov/pubmed/36510004
Federated Analysis in COINSTAC Reveals Functional Network Connectivity and Spectral Links to Smoking and Alcohol Consumption in Nearly 2,000 Adolescent Brains. Gazula H, Rootes-Murdy K, Holla B, Basodi S, Zhang Z, Verner E, Kelly R, Murthy P, Chakrabarti A, Basu D, Bhagyalakshmi Nanjayya S, Lenin Singh R, Lourembam Singh R, Kalyanram K, Kartik K, Kalyanaraman K, Ghattu K, Kuriyan R, Kurpad SS, Barker GJ, Bharath RD, Desrivieres S, Purushottam M, Orfanos DP, Sharma E, Hickman M, Toledano M, Vaidya N, Banaschewski T, Bokde ALW, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillére Martinot ML, Artiges E, Nees F, Paus T, Poustka L, Fröhner JH, Robinson L, Smolka MN, Walter H, Winterer J, Whelan R, IMAGEN Consortium, Turner JA, Sarwate AD, Plis SM, Benegal V, Schumann G, Calhoun VD Neuroinformatics 36434478 Neuroinformatics 2023 Apr https://www.ncbi.nlm.nih.gov/pubmed/36434478
Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium. Kennedy E, Vadlamani S, Lindsey HM, Lei PW, Jo-Pugh M, Adamson M, Alda M, Alonso-Lana S, Ambrogi S, Anderson TJ, Arango C, Asarnow RF, Avram M, Ayesa-Arriola R, Babikian T, Banaj N, Bird LJ, Borgwardt S, Brodtmann A, Brosch K, Caeyenberghs K, Calhoun VD, Chiaravalloti ND, Cifu DX, Crespo-Facorro B, Dalrymple-Alford JC, Dams-O'Connor K, Dannlowski U, Darby D, Davenport N, DeLuca J, Diaz-Caneja CM, Disner SG, Dobryakova E, Ehrlich S, Esopenko C, Ferrarelli F, Frank LE, Franz C, Fuentes-Claramonte P, Genova H, Giza CC, Goltermann J, Grotegerd D, Gruber M, Gutierrez-Zotes A, Ha M, Haavik J, Hinkin C, Hoskinson KR, Hubl D, Irimia A, Jansen A, Kaess M, Kang X, Kenney K, Keřková B, Khlif MS, Kim M, Kindler J, Kircher T, Knížková K, Kolskår KK, Krch D, Kremen WS, Kuhn T, Kumari V, Kwon JS, Langella R, Laskowitz S, Lee J, Lengenfelder J, Liebel SW, Liou-Johnson V, Lippa SM, Løvstad M, Lundervold A, Marotta C, Marquardt CA, Mattos P, Mayeli A, McDonald CR, Meinert S, Melzer TR, Merchán-Naranjo J, Michel C, Morey RA, Mwangi B, Myall DJ, Nenadić I, Newsome MR, Nunes A, O'Brien T, Oertel V, Ollinger J, Olsen A, de la Foz VOG, Ozmen M, Pardoe H, Parent M, Piras F, Piras F, Pomarol-Clotet E, Repple J, Richard G, Rodriguez J, Rodriguez M, Rootes-Murdy K, Rowland J, Ryan NP, Salvador R, Sanders AM, Schmidt A, Soares JC, Spalleta G, Španiel F, Stasenko A, Stein F, Straube B, Thames A, Thomas-Odenthal F, Thomopoulos SI, Tone E, Torres I, Troyanskaya M, Turner JA, Ulrichsen KM, Umpierrez G, Vilella E, Vivash L, Walker WC, Werden E, Westlye LT, Wild K, Wroblewski A, Wu MJ, Wylie GR, Yatham LN, Zunta-Soares GB, Thompson PM, Tate DF, Hillary FG, Dennis EL, Wilde EA bioRxiv : the preprint server for biology 36712107 bioRxiv 2023 Apr 7 https://www.ncbi.nlm.nih.gov/pubmed/36712107
Progressive Spinal Cord Degeneration in Friedreich's Ataxia: Results from ENIGMA-Ataxia. Rezende TJR, Adanyeguh IM, Arrigoni F, Bender B, Cendes F, Corben LA, Deistung A, Delatycki M, Dogan I, Egan GF, Göricke SL, Georgiou-Karistianis N, Henry PG, Hutter D, Jahanshad N, Joers JM, Lenglet C, Lindig T, Martinez ARM, Martinuzzi A, Paparella G, Peruzzo D, Reetz K, Romanzetti S, Schöls L, Schulz JB, Synofzik M, Thomopoulos SI, Thompson PM, Timmann D, Harding IH, França MC Jr Movement disorders : official journal of the Movement Disorder Society 36308733 Mov Disord 2023 Jan https://www.ncbi.nlm.nih.gov/pubmed/36308733
Relationships between physical activity, healthy eating and cortical thickness in children and young adults. Angelo BC, DeFendis A, Yau A, Alves JM, Thompson PM, Xiang AH, Page KA, Luo S Brain imaging and behavior 36319908 Brain Imaging Behav 2022 Dec https://www.ncbi.nlm.nih.gov/pubmed/36319908
Disentangling the autism-anxiety overlap: fMRI of reward processing in a community-based longitudinal study. Mikita N, Simonoff E, Pine DS, Goodman R, Artiges E, Banaschewski T, Bokde AL, Bromberg U, Büchel C, Cattrell A, Conrod PJ, Desrivières S, Flor H, Frouin V, Gallinat J, Garavan H, Heinz A, Ittermann B, Jurk S, Martinot JL, Paillère Martinot ML, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Smolka MN, Walter H, Whelan R, Schumann G, Stringaris A Translational psychiatry 27351599 Transl Psychiatry 2016 Jun 28 https://www.ncbi.nlm.nih.gov/pubmed/27351599
Developmentally Sensitive Interaction Effects of Genes and the Social Environment on Total and Subcortical Brain Volumes. Richards JS, Arias Vásquez A, Franke B, Hoekstra PJ, Heslenfeld DJ, Oosterlaan J, Faraone SV, Buitelaar JK, Hartman CA PloS one 27218681 PLoS One 2016 https://www.ncbi.nlm.nih.gov/pubmed/27218681
Volumetric and shape analyses of subcortical structures in United States service members with mild traumatic brain injury. Tate DF, Wade BS, Velez CS, Drennon AM, Bolzenius J, Gutman BA, Thompson PM, Lewis JD, Wilde EA, Bigler ED, Shenton ME, Ritter JL, York GE Journal of neurology 27435967 J Neurol 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/27435967
Quantifying patterns of brain activity: Distinguishing unaffected siblings from participants with ADHD and healthy individuals. Wolfers T, van Rooij D, Oosterlaan J, Heslenfeld D, Hartman CA, Hoekstra PJ, Beckmann CF, Franke B, Buitelaar JK, Marquand AF NeuroImage. Clinical 27489770 Neuroimage Clin 2016 https://www.ncbi.nlm.nih.gov/pubmed/27489770
Using genomic annotations increases statistical power to detect eGenes. Duong D, Zou J, Hormozdiari F, Sul JH, Ernst J, Han B, Eskin E Bioinformatics (Oxford, England) 27307612 Bioinformatics 2016 Jun 15 https://www.ncbi.nlm.nih.gov/pubmed/27307612
Diffusion-weighted imaging uncovers likely sources of processing-speed deficits in schizophrenia. Kochunov P, Rowland LM, Fieremans E, Veraart J, Jahanshad N, Eskandar G, Du X, Muellerklein F, Savransky A, Shukla D, Sampath H, Thompson PM, Hong LE Proceedings of the National Academy of Sciences of the United States of America 27834215 Proc Natl Acad Sci U S A 2016 Nov 22 https://www.ncbi.nlm.nih.gov/pubmed/27834215
Multimodal neuroimaging of male and female brain structure in health and disease across the life span. Jahanshad N, Thompson PM Journal of neuroscience research 27870421 J Neurosci Res 2017 Jan 2 https://www.ncbi.nlm.nih.gov/pubmed/27870421
Discovering Single Nucleotide Polymorphisms Regulating Human Gene Expression Using Allele Specific Expression from RNA-seq Data. Kang EY, Martin LJ, Mangul S, Isvilanonda W, Zou J, Ben-David E, Han B, Lusis AJ, Shifman S, Eskin E Genetics 27765809 Genetics 2016 Nov https://www.ncbi.nlm.nih.gov/pubmed/27765809
Testing differential susceptibility: Plasticity genes, the social environment, and their interplay in adolescent response inhibition. Richards JS, Arias Vásquez A, van Rooij D, van der Meer D, Franke B, Hoekstra PJ, Heslenfeld DJ, Oosterlaan J, Faraone SV, Hartman CA, Buitelaar JK The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry 27170266 World J Biol Psychiatry 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/27170266
Neural basis of reward anticipation and its genetic determinants. Jia T, Macare C, Desrivières S, Gonzalez DA, Tao C, Ji X, Ruggeri B, Nees F, Banaschewski T, Barker GJ, Bokde AL, Bromberg U, Büchel C, Conrod PJ, Dove R, Frouin V, Gallinat J, Garavan H, Gowland PA, Heinz A, Ittermann B, Lathrop M, Lemaitre H, Martinot JL, Paus T, Pausova Z, Poline JB, Rietschel M, Robbins T, Smolka MN, Müller CP, Feng J, Rothenfluh A, Flor H, Schumann G, IMAGEN Consortium Proceedings of the National Academy of Sciences of the United States of America 27001827 Proc Natl Acad Sci U S A 2016 Apr 5 https://www.ncbi.nlm.nih.gov/pubmed/27001827
Pathway analysis in attention deficit hyperactivity disorder: An ensemble approach. Mooney MA, McWeeney SK, Faraone SV, Hinney A, Hebebrand J, IMAGE2 Consortium, German ADHD GWAS Group, Nigg JT, Wilmot B American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 27004716 Am J Med Genet B Neuropsychiatr Genet 2016 Sep https://www.ncbi.nlm.nih.gov/pubmed/27004716
Childhood adversity impacts on brain subcortical structures relevant to depression. Frodl T, Janowitz D, Schmaal L, Tozzi L, Dobrowolny H, Stein DJ, Veltman DJ, Wittfeld K, van Erp TGM, Jahanshad N, Block A, Hegenscheid K, Völzke H, Lagopoulos J, Hatton SN, Hickie IB, Frey EM, Carballedo A, Brooks SJ, Vuletic D, Uhlmann A, Veer IM, Walter H, Schnell K, Grotegerd D, Arolt V, Kugel H, Schramm E, Konrad C, Zurowski B, Baune BT, van der Wee NJA, van Tol MJ, Penninx BWJH, Thompson PM, Hibar DP, Dannlowski U, Grabe HJ Journal of psychiatric research 27918926 J Psychiatr Res 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/27918926
Multiple testing correction in linear mixed models. Joo JW, Hormozdiari F, Han B, Eskin E Genome biology 27039378 Genome Biol 2016 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/27039378
Ventral Striatum Connectivity During Reward Anticipation in Adolescent Smokers. Jollans L, Zhipeng C, Icke I, Greene C, Kelly C, Banaschewski T, Bokde AL, Bromberg U, Büchel C, Cattrell A, Conrod PJ, Desrivières S, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Artiges E, Nees F, Papadopoulos Orfanos D, Paus T, Smolka MN, Walter H, Schumann G, Whelan R Developmental neuropsychology 27074029 Dev Neuropsychol 2016 Jan-Mar https://www.ncbi.nlm.nih.gov/pubmed/27074029
Autism spectrum disorder and attention-deficit/hyperactivity disorder in early childhood: A review of unique and shared characteristics and developmental antecedents. Visser JC, Rommelse NN, Greven CU, Buitelaar JK Neuroscience and biobehavioral reviews 27026637 Neurosci Biobehav Rev 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/27026637
Neuroimaging Evidence for Right Orbitofrontal Cortex Differences in Adolescents With Emotional and Behavioral Dysregulation. Spechler PA, Chaarani B, Orr C, Mackey S, Higgins ST, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Conrod PJ, Desrivières S, Flor H, Frouin V, Gowland P, Heinz A, Ittermann B, Martinot JL, Nees F, Orfanos DP, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Garavan H, Althoff RR, IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 31004740 J Am Acad Child Adolesc Psychiatry 2019 Nov https://www.ncbi.nlm.nih.gov/pubmed/31004740
The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets. Larivière S, Paquola C, Park BY, Royer J, Wang Y, Benkarim O, Vos de Wael R, Valk SL, Thomopoulos SI, Kirschner M, Lewis LB, Evans AC, Sisodiya SM, McDonald CR, Thompson PM, Bernhardt BC Nature methods 34194050 Nat Methods 2021 Jul https://www.ncbi.nlm.nih.gov/pubmed/34194050
Continually Modeling Alzheimer's Disease Progression via Deep Multi-Order Preserving Weight Consolidation. Zhang J, Wang Y Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 34378008 Med Image Comput Comput Assist Interv 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/34378008
A systems-level analysis highlights microglial activation as a modifying factor in common epilepsies. Altmann A, Ryten M, Di Nunzio M, Ravizza T, Tolomeo D, Reynolds RH, Somani A, Bacigaluppi M, Iori V, Micotti E, Di Sapia R, Cerovic M, Palma E, Ruffolo G, Botía JA, Absil J, Alhusaini S, Alvim MKM, Auvinen P, Bargallo N, Bartolini E, Bender B, Bergo FPG, Bernardes T, Bernasconi A, Bernasconi N, Bernhardt BC, Blackmon K, Braga B, Caligiuri ME, Calvo A, Carlson C, Carr SJA, Cavalleri GL, Cendes F, Chen J, Chen S, Cherubini A, Concha L, David P, Delanty N, Depondt C, Devinsky O, Doherty CP, Domin M, Focke NK, Foley S, Franca W, Gambardella A, Guerrini R, Hamandi K, Hibar DP, Isaev D, Jackson GD, Jahanshad N, Kälviäinen R, Keller SS, Kochunov P, Kotikalapudi R, Kowalczyk MA, Kuzniecky R, Kwan P, Labate A, Langner S, Lenge M, Liu M, Martin P, Mascalchi M, Meletti S, Morita-Sherman ME, O'Brien TJ, Pariente JC, Richardson MP, Rodriguez-Cruces R, Rummel C, Saavalainen T, Semmelroch MK, Severino M, Striano P, Thesen T, Thomas RH, Tondelli M, Tortora D, Vaudano AE, Vivash L, von Podewils F, Wagner J, Weber B, Wiest R, Yasuda CL, Zhang G, Zhang J, ENIGMA-Epilepsy Working Group, Leu C, Avbersek A, EpiPGX Consortium, Thom M, Whelan CD, Thompson P, McDonald CR, Vezzani A, Sisodiya SM Neuropathology and applied neurobiology 34388852 Neuropathol Appl Neurobiol 2022 Feb https://www.ncbi.nlm.nih.gov/pubmed/34388852
The interaction of child abuse and rs1360780 of the FKBP5 gene is associated with amygdala resting-state functional connectivity in young adults. Wesarg C, Veer IM, Oei NYL, Daedelow LS, Lett TA, Banaschewski T, Barker GJ, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Brühl R, Martinot JL, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Whelan R, Schumann G, Heinz A, Walter H, IMAGEN Consortium Human brain mapping 33818852 Hum Brain Mapp 2021 Jul https://www.ncbi.nlm.nih.gov/pubmed/33818852
Associations Between Exposure to Gestational Diabetes Mellitus In Utero and Daily Energy Intake, Brain Responses to Food Cues, and Adiposity in Children. Luo S, Angelo BC, Chow T, Monterosso JR, Thompson PM, Xiang AH, Page KA Diabetes care 33827804 Diabetes Care 2021 May https://www.ncbi.nlm.nih.gov/pubmed/33827804
Social cognition in 22q11.2 deletion syndrome and idiopathic developmental neuropsychiatric disorders. Jalal R, Nair A, Lin A, Eckfeld A, Kushan L, Zinberg J, Karlsgodt KH, Cannon TD, Bearden CE Journal of neurodevelopmental disorders 33863277 J Neurodev Disord 2021 Apr 17 https://www.ncbi.nlm.nih.gov/pubmed/33863277
Association between body mass index and subcortical brain volumes in bipolar disorders-ENIGMA study in 2735 individuals. McWhinney SR, Abé C, Alda M, Benedetti F, Bøen E, Del Mar Bonnin C, Borgers T, Brosch K, Canales-Rodríguez EJ, Cannon DM, Dannlowski U, Díaz-Zuluaga AM, Elvsåshagen T, Eyler LT, Fullerton JM, Goikolea JM, Goltermann J, Grotegerd D, Haarman BCM, Hahn T, Howells FM, Ingvar M, Kircher TTJ, Krug A, Kuplicki RT, Landén M, Lemke H, Liberg B, Lopez-Jaramillo C, Malt UF, Martyn FM, Mazza E, McDonald C, McPhilemy G, Meier S, Meinert S, Meller T, Melloni EMT, Mitchell PB, Nabulsi L, Nenadic I, Opel N, Ophoff RA, Overs BJ, Pfarr JK, Pineda-Zapata JA, Pomarol-Clotet E, Raduà J, Repple J, Richter M, Ringwald KG, Roberts G, Salvador R, Savitz J, Schmitt S, Schofield PR, Sim K, Stein DJ, Stein F, Temmingh HS, Thiel K, van Haren NEM, Gestel HV, Vargas C, Vieta E, Vreeker A, Waltemate L, Yatham LN, Ching CRK, Andreassen O, Thompson PM, Hajek T, ENIGMA Bipolar Disorders Working Group Molecular psychiatry 33863996 Mol Psychiatry 2021 Nov https://www.ncbi.nlm.nih.gov/pubmed/33863996
Functional Connectivity Predicts Individual Development of Inhibitory Control during Adolescence. Wang H, Fan L, Song M, Liu B, Wu D, Jiang R, Li J, Li A, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Chaarani B, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Jiang T Cerebral cortex (New York, N.Y. : 1991) 33386409 Cereb Cortex 2021 Mar 31 https://www.ncbi.nlm.nih.gov/pubmed/33386409
Effects of copy number variations on brain structure and risk for psychiatric illness: Large-scale studies from the ENIGMA working groups on CNVs. Sønderby IE, Ching CRK, Thomopoulos SI, van der Meer D, Sun D, Villalon-Reina JE, Agartz I, Amunts K, Arango C, Armstrong NJ, Ayesa-Arriola R, Bakker G, Bassett AS, Boomsma DI, Bülow R, Butcher NJ, Calhoun VD, Caspers S, Chow EWC, Cichon S, Ciufolini S, Craig MC, Crespo-Facorro B, Cunningham AC, Dale AM, Dazzan P, de Zubicaray GI, Djurovic S, Doherty JL, Donohoe G, Draganski B, Durdle CA, Ehrlich S, Emanuel BS, Espeseth T, Fisher SE, Ge T, Glahn DC, Grabe HJ, Gur RE, Gutman BA, Haavik J, Håberg AK, Hansen LA, Hashimoto R, Hibar DP, Holmes AJ, Hottenga JJ, Hulshoff Pol HE, Jalbrzikowski M, Knowles EEM, Kushan L, Linden DEJ, Liu J, Lundervold AJ, Martin-Brevet S, Martínez K, Mather KA, Mathias SR, McDonald-McGinn DM, McRae AF, Medland SE, Moberget T, Modenato C, Monereo Sánchez J, Moreau CA, Mühleisen TW, Paus T, Pausova Z, Prieto C, Ragothaman A, Reinbold CS, Reis Marques T, Repetto GM, Reymond A, Roalf DR, Rodriguez-Herreros B, Rucker JJ, Sachdev PS, Schmitt JE, Schofield PR, Silva AI, Stefansson H, Stein DJ, Tamnes CK, Tordesillas-Gutiérrez D, Ulfarsson MO, Vajdi A, van 't Ent D, van den Bree MBM, Vassos E, Vázquez-Bourgon J, Vila-Rodriguez F, Walters GB, Wen W, Westlye LT, Wittfeld K, Zackai EH, Stefánsson K, Jacquemont S, Thompson PM, Bearden CE, Andreassen OA, ENIGMA-CNV Working Group, ENIGMA 22q11.2 Deletion Syndrome Working Group Human brain mapping 33615640 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33615640
Predicting future cognitive decline with hyperbolic stochastic coding. Zhang J, Dong Q, Shi J, Li Q, Stonnington CM, Gutman BA, Chen K, Reiman EM, Caselli RJ, Thompson PM, Ye J, Wang Y Medical image analysis 33711742 Med Image Anal 2021 May https://www.ncbi.nlm.nih.gov/pubmed/33711742
Analysis of structural brain asymmetries in attention-deficit/hyperactivity disorder in 39 datasets. Postema MC, Hoogman M, Ambrosino S, Asherson P, Banaschewski T, Bandeira CE, Baranov A, Bau CHD, Baumeister S, Baur-Streubel R, Bellgrove MA, Biederman J, Bralten J, Brandeis D, Brem S, Buitelaar JK, Busatto GF, Castellanos FX, Cercignani M, Chaim-Avancini TM, Chantiluke KC, Christakou A, Coghill D, Conzelmann A, Cubillo AI, Cupertino RB, de Zeeuw P, Doyle AE, Durston S, Earl EA, Epstein JN, Ethofer T, Fair DA, Fallgatter AJ, Faraone SV, Frodl T, Gabel MC, Gogberashvili T, Grevet EH, Haavik J, Harrison NA, Hartman CA, Heslenfeld DJ, Hoekstra PJ, Hohmann S, Høvik MF, Jernigan TL, Kardatzki B, Karkashadze G, Kelly C, Kohls G, Konrad K, Kuntsi J, Lazaro L, Lera-Miguel S, Lesch KP, Louza MR, Lundervold AJ, Malpas CB, Mattos P, McCarthy H, Namazova-Baranova L, Nicolau R, Nigg JT, Novotny SE, Oberwelland Weiss E, O'Gorman Tuura RL, Oosterlaan J, Oranje B, Paloyelis Y, Pauli P, Picon FA, Plessen KJ, Ramos-Quiroga JA, Reif A, Reneman L, Rosa PGP, Rubia K, Schrantee A, Schweren LJS, Seitz J, Shaw P, Silk TJ, Skokauskas N, Soliva Vila JC, Stevens MC, Sudre G, Tamm L, Tovar-Moll F, van Erp TGM, Vance A, Vilarroya O, Vives-Gilabert Y, von Polier GG, Walitza S, Yoncheva YN, Zanetti MV, Ziegler GC, Glahn DC, Jahanshad N, Medland SE, ENIGMA ADHD Working Group, Thompson PM, Fisher SE, Franke B, Francks C Journal of child psychology and psychiatry, and allied disciplines 33748971 J Child Psychol Psychiatry 2021 Oct https://www.ncbi.nlm.nih.gov/pubmed/33748971
A UNIVARIATE PERSISTENT BRAIN NETWORK FEATURE BASED ON THE AGGREGATED COST OF CYCLES FROM THE NESTED FILTRATION NETWORKS. Farazi M, Zhan L, Lepore N, Thompson PM, Wang Y Proceedings. IEEE International Symposium on Biomedical Imaging 34012505 Proc IEEE Int Symp Biomed Imaging 2020 https://www.ncbi.nlm.nih.gov/pubmed/34012505
Multi-task Dictionary Learning based on Convolutional Neural Networks for Longitudinal Clinical Score Predictions in Alzheimer's Disease. Dong Q, Zhang J, Li Q, Thompson PM, Caselli RJ, Ye J, Wang Y, Alzheimers Disease Neuroimaging Initiative Human brain and artificial intelligence : first International Workshop, HBAI 2019, held in conjunction with IJCAI 2019, Macao, China, August 12, 2019, revised selected papers. HBAI (Conference) (1st : 2019 : Macau, China) 33907742 Hum Brain Artif Intell (2019) 2019 https://www.ncbi.nlm.nih.gov/pubmed/33907742
Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA. Radua J, Vieta E, Shinohara R, Kochunov P, Quidé Y, Green MJ, Weickert CS, Weickert T, Bruggemann J, Kircher T, Nenadić I, Cairns MJ, Seal M, Schall U, Henskens F, Fullerton JM, Mowry B, Pantelis C, Lenroot R, Cropley V, Loughland C, Scott R, Wolf D, Satterthwaite TD, Tan Y, Sim K, Piras F, Spalletta G, Banaj N, Pomarol-Clotet E, Solanes A, Albajes-Eizagirre A, Canales-Rodríguez EJ, Sarro S, Di Giorgio A, Bertolino A, Stäblein M, Oertel V, Knöchel C, Borgwardt S, du Plessis S, Yun JY, Kwon JS, Dannlowski U, Hahn T, Grotegerd D, Alloza C, Arango C, Janssen J, Díaz-Caneja C, Jiang W, Calhoun V, Ehrlich S, Yang K, Cascella NG, Takayanagi Y, Sawa A, Tomyshev A, Lebedeva I, Kaleda V, Kirschner M, Hoschl C, Tomecek D, Skoch A, van Amelsvoort T, Bakker G, James A, Preda A, Weideman A, Stein DJ, Howells F, Uhlmann A, Temmingh H, López-Jaramillo C, Díaz-Zuluaga A, Fortea L, Martinez-Heras E, Solana E, Llufriu S, Jahanshad N, Thompson P, Turner J, van Erp T, ENIGMA Consortium collaborators NeuroImage 32470572 Neuroimage 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/32470572
Social support modulates the association between PTSD diagnosis and medial frontal volume in Chinese adults who lost their only child. Qi R, Luo Y, Zhang L, Weng Y, Surento W, Jahanshad N, Xu Q, Yin Y, Li L, Cao Z, Thompson PM, Lu GM Neurobiology of stress 32490056 Neurobiol Stress 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/32490056
Consortium neuroscience of attention deficit/hyperactivity disorder and autism spectrum disorder: The ENIGMA adventure. Hoogman M, van Rooij D, Klein M, Boedhoe P, Ilioska I, Li T, Patel Y, Postema MC, Zhang-James Y, Anagnostou E, Arango C, Auzias G, Banaschewski T, Bau CHD, Behrmann M, Bellgrove MA, Brandeis D, Brem S, Busatto GF, Calderoni S, Calvo R, Castellanos FX, Coghill D, Conzelmann A, Daly E, Deruelle C, Dinstein I, Durston S, Ecker C, Ehrlich S, Epstein JN, Fair DA, Fitzgerald J, Freitag CM, Frodl T, Gallagher L, Grevet EH, Haavik J, Hoekstra PJ, Janssen J, Karkashadze G, King JA, Konrad K, Kuntsi J, Lazaro L, Lerch JP, Lesch KP, Louza MR, Luna B, Mattos P, McGrath J, Muratori F, Murphy C, Nigg JT, Oberwelland-Weiss E, O'Gorman Tuura RL, O'Hearn K, Oosterlaan J, Parellada M, Pauli P, Plessen KJ, Ramos-Quiroga JA, Reif A, Reneman L, Retico A, Rosa PGP, Rubia K, Shaw P, Silk TJ, Tamm L, Vilarroya O, Walitza S, Jahanshad N, Faraone SV, Francks C, van den Heuvel OA, Paus T, Thompson PM, Buitelaar JK, Franke B Human brain mapping 32420680 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32420680
Mega-analysis methods in ENIGMA: The experience of the generalized anxiety disorder working group. Zugman A, Harrewijn A, Cardinale EM, Zwiebel H, Freitag GF, Werwath KE, Bas-Hoogendam JM, Groenewold NA, Aghajani M, Hilbert K, Cardoner N, Porta-Casteràs D, Gosnell S, Salas R, Blair KS, Blair JR, Hammoud MZ, Milad M, Burkhouse K, Phan KL, Schroeder HK, Strawn JR, Beesdo-Baum K, Thomopoulos SI, Grabe HJ, Van der Auwera S, Wittfeld K, Nielsen JA, Buckner R, Smoller JW, Mwangi B, Soares JC, Wu MJ, Zunta-Soares GB, Jackowski AP, Pan PM, Salum GA, Assaf M, Diefenbach GJ, Brambilla P, Maggioni E, Hofmann D, Straube T, Andreescu C, Berta R, Tamburo E, Price R, Manfro GG, Critchley HD, Makovac E, Mancini M, Meeten F, Ottaviani C, Agosta F, Canu E, Cividini C, Filippi M, Kostić M, Munjiza A, Filippi CA, Leibenluft E, Alberton BAV, Balderston NL, Ernst M, Grillon C, Mujica-Parodi LR, van Nieuwenhuizen H, Fonzo GA, Paulus MP, Stein MB, Gur RE, Gur RC, Kaczkurkin AN, Larsen B, Satterthwaite TD, Harper J, Myers M, Perino MT, Yu Q, Sylvester CM, Veltman DJ, Lueken U, Van der Wee NJA, Stein DJ, Jahanshad N, Thompson PM, Pine DS, Winkler AM Human brain mapping 32596977 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32596977
How do substance use disorders compare to other psychiatric conditions on structural brain abnormalities? A cross-disorder meta-analytic comparison using the ENIGMA consortium findings. Navarri X, Afzali MH, Lavoie J, Sinha R, Stein DJ, Momenan R, Veltman DJ, Korucuoglu O, Sjoerds Z, van Holst RJ, Hester R, Orr C, Cousijn J, Yucel M, Lorenzetti V, Wiers R, Jahanshad N, Glahn DC, Thompson PM, Mackey S, Conrod PJ Human brain mapping 32643841 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32643841
An Integrated Analysis of Neural Network Correlates of Categorical and Dimensional Models of Attention-Deficit/Hyperactivity Disorder. Pruim RHR, Beckmann CF, Oldehinkel M, Oosterlaan J, Heslenfeld D, Hartman CA, Hoekstra PJ, Faraone SV, Franke B, Buitelaar JK, Mennes M Biological psychiatry. Cognitive neuroscience and neuroimaging 30773473 Biol Psychiatry Cogn Neurosci Neuroimaging 2019 May https://www.ncbi.nlm.nih.gov/pubmed/30773473
Pubertal maturation and sex effects on the default-mode network connectivity implicated in mood dysregulation. Ernst M, Benson B, Artiges E, Gorka AX, Lemaitre H, Lago T, Miranda R, Banaschewski T, Bokde ALW, Bromberg U, Brühl R, Büchel C, Cattrell A, Conrod P, Desrivières S, Fadai T, Flor H, Grigis A, Gallinat J, Garavan H, Gowland P, Grimmer Y, Heinz A, Kappel V, Nees F, Papadopoulos-Orfanos D, Penttilä J, Poustka L, Smolka MN, Stringaris A, Struve M, van Noort BM, Walter H, Whelan R, Schumann G, Grillon C, Martinot MP, Martinot JL, IMAGEN Consortium Translational psychiatry 30804326 Transl Psychiatry 2019 Feb 25 https://www.ncbi.nlm.nih.gov/pubmed/30804326
Genetic Markers of ADHD-Related Variations in Intracranial Volume. Klein M, Walters RK, Demontis D, Stein JL, Hibar DP, Adams HH, Bralten J, Roth Mota N, Schachar R, Sonuga-Barke E, Mattheisen M, Neale BM, Thompson PM, Medland SE, Børglum AD, Faraone SV, Arias-Vasquez A, Franke B The American journal of psychiatry 30818988 Am J Psychiatry 2019 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/30818988
Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. Kochunov P, Patel B, Ganjgahi H, Donohue B, Ryan M, Hong EL, Chen X, Adhikari B, Jahanshad N, Thompson PM, Van't Ent D, den Braber A, de Geus EJC, Brouwer RM, Boomsma DI, Hulshoff Pol HE, de Zubicaray GI, McMahon KL, Martin NG, Wright MJ, Nichols TE Frontiers in neuroinformatics 30914942 Front Neuroinform 2019 https://www.ncbi.nlm.nih.gov/pubmed/30914942
The Cortical Neuroimmune Regulator TANK Affects Emotional Processing and Enhances Alcohol Drinking: A Translational Study. Müller CP, Chu C, Qin L, Liu C, Xu B, Gao H, Ruggeri B, Hieber S, Schneider J, Jia T, Tay N, Akira S, Satoh T, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Artiges E, Lemaitre H, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Bakalkin G, Liu Y, Desrivières S, Elliott P, Eulenburg V, Levy D, Crews F, Schumann G Cerebral cortex (New York, N.Y. : 1991) 30721969 Cereb Cortex 2019 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/30721969
Heavy drinking in adolescents is associated with change in brainstem microstructure and reward sensitivity. Galinowski A, Miranda R, Lemaitre H, Artiges E, Paillère Martinot ML, Filippi I, Penttilä J, Grimmer Y, van Noort BM, Stringaris A, Becker A, Isensee C, Struve M, Fadai T, Kappel V, Goodman R, Banaschewski T, Bokde ALW, Bromberg U, Brühl R, Büchel C, Cattrell A, Conrod P, Desrivières S, Flor H, Fröhner JH, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Hohmann S, Jurk S, Millenet S, Nees F, Papadopoulos-Orfanos D, Poustka L, Quinlan EB, Smolka MN, Walter H, Whelan R, Schumann G, Martinot JL, IMAGEN Consortium Addiction biology 31328396 Addict Biol 2020 May https://www.ncbi.nlm.nih.gov/pubmed/31328396
Toward a global and reproducible science for brain imaging in neurotrauma: the ENIGMA adult moderate/severe traumatic brain injury working group. Olsen A, Babikian T, Bigler ED, Caeyenberghs K, Conde V, Dams-O'Connor K, Dobryakova E, Genova H, Grafman J, Håberg AK, Heggland I, Hellstrøm T, Hodges CB, Irimia A, Jha RM, Johnson PK, Koliatsos VE, Levin H, Li LM, Lindsey HM, Livny A, Løvstad M, Medaglia J, Menon DK, Mondello S, Monti MM, Newcombe VFJ, Petroni A, Ponsford J, Sharp D, Spitz G, Westlye LT, Thompson PM, Dennis EL, Tate DF, Wilde EA, Hillary FG Brain imaging and behavior 32797398 Brain Imaging Behav 2021 Apr https://www.ncbi.nlm.nih.gov/pubmed/32797398
Brain structure and habitat: Do the brains of our children tell us where they have been brought up? Kühn S, Banaschewski T, Bokde ALW, Büchel C, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MLP, Nees F, Orfanos DP, Paus T, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Meyer-Lindenberg A, Gallinat J NeuroImage 32800993 Neuroimage 2020 Nov 15 https://www.ncbi.nlm.nih.gov/pubmed/32800993
The reliability and heritability of cortical folds and their genetic correlations across hemispheres. Pizzagalli F, Auzias G, Yang Q, Mathias SR, Faskowitz J, Boyd JD, Amini A, Rivière D, McMahon KL, de Zubicaray GI, Martin NG, Mangin JF, Glahn DC, Blangero J, Wright MJ, Thompson PM, Kochunov P, Jahanshad N Communications biology 32934300 Commun Biol 2020 Sep 15 https://www.ncbi.nlm.nih.gov/pubmed/32934300
What we learn about bipolar disorder from large-scale neuroimaging: Findings and future directions from the ENIGMA Bipolar Disorder Working Group. Ching CRK, Hibar DP, Gurholt TP, Nunes A, Thomopoulos SI, Abé C, Agartz I, Brouwer RM, Cannon DM, de Zwarte SMC, Eyler LT, Favre P, Hajek T, Haukvik UK, Houenou J, Landén M, Lett TA, McDonald C, Nabulsi L, Patel Y, Pauling ME, Paus T, Radua J, Soeiro-de-Souza MG, Tronchin G, van Haren NEM, Vieta E, Walter H, Zeng LL, Alda M, Almeida J, Alnaes D, Alonso-Lana S, Altimus C, Bauer M, Baune BT, Bearden CE, Bellani M, Benedetti F, Berk M, Bilderbeck AC, Blumberg HP, Bøen E, Bollettini I, Del Mar Bonnin C, Brambilla P, Canales-Rodríguez EJ, Caseras X, Dandash O, Dannlowski U, Delvecchio G, Díaz-Zuluaga AM, Dima D, Duchesnay É, Elvsåshagen T, Fears SC, Frangou S, Fullerton JM, Glahn DC, Goikolea JM, Green MJ, Grotegerd D, Gruber O, Haarman BCM, Henry C, Howells FM, Ives-Deliperi V, Jansen A, Kircher TTJ, Knöchel C, Kramer B, Lafer B, López-Jaramillo C, Machado-Vieira R, MacIntosh BJ, Melloni EMT, Mitchell PB, Nenadic I, Nery F, Nugent AC, Oertel V, Ophoff RA, Ota M, Overs BJ, Pham DL, Phillips ML, Pineda-Zapata JA, Poletti S, Polosan M, Pomarol-Clotet E, Pouchon A, Quidé Y, Rive MM, Roberts G, Ruhe HG, Salvador R, Sarró S, Satterthwaite TD, Schene AH, Sim K, Soares JC, Stäblein M, Stein DJ, Tamnes CK, Thomaidis GV, Upegui CV, Veltman DJ, Wessa M, Westlye LT, Whalley HC, Wolf DH, Wu MJ, Yatham LN, Zarate CA, Thompson PM, Andreassen OA, ENIGMA Bipolar Disorder Working Group Human brain mapping 32725849 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32725849
Challenges and opportunities for neuroimaging in young patients with traumatic brain injury: a coordinated effort towards advancing discovery from the ENIGMA pediatric moderate/severe TBI group. Dennis EL, Caeyenberghs K, Asarnow RF, Babikian T, Bartnik-Olson B, Bigler ED, Figaji A, Giza CC, Goodrich-Hunsaker NJ, Hodges CB, Hoskinson KR, Königs M, Levin HS, Lindsey HM, Livny A, Max JE, Merkley TL, Newsome MR, Olsen A, Ryan NP, Spruiell MS, Suskauer SJ, Thomopoulos SI, Ware AL, Watson CG, Wheeler AL, Yeates KO, Zielinski BA, Thompson PM, Tate DF, Wilde EA Brain imaging and behavior 32734437 Brain Imaging Behav 2021 Apr https://www.ncbi.nlm.nih.gov/pubmed/32734437
Longitudinal associations between amygdala reactivity and cannabis use in a large sample of adolescents. Spechler PA, Chaarani B, Orr C, Albaugh MD, Fontaine NR, Higgins ST, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Ittermann B, Artiges E, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Garavan H Psychopharmacology 32772145 Psychopharmacology (Berl) 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/32772145
Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia. Moreau CA, Urchs SGW, Kuldeep K, Orban P, Schramm C, Dumas G, Labbe A, Huguet G, Douard E, Quirion PO, Lin A, Kushan L, Grot S, Luck D, Mendrek A, Potvin S, Stip E, Bourgeron T, Evans AC, Bearden CE, Bellec P, Jacquemont S Nature communications 33077750 Nat Commun 2020 Oct 19 https://www.ncbi.nlm.nih.gov/pubmed/33077750
A large-scale genome-wide association study meta-analysis of cannabis use disorder. Johnson EC, Demontis D, Thorgeirsson TE, Walters RK, Polimanti R, Hatoum AS, Sanchez-Roige S, Paul SE, Wendt FR, Clarke TK, Lai D, Reginsson GW, Zhou H, He J, Baranger DAA, Gudbjartsson DF, Wedow R, Adkins DE, Adkins AE, Alexander J, Bacanu SA, Bigdeli TB, Boden J, Brown SA, Bucholz KK, Bybjerg-Grauholm J, Corley RP, Degenhardt L, Dick DM, Domingue BW, Fox L, Goate AM, Gordon SD, Hack LM, Hancock DB, Hartz SM, Hickie IB, Hougaard DM, Krauter K, Lind PA, McClintick JN, McQueen MB, Meyers JL, Montgomery GW, Mors O, Mortensen PB, Nordentoft M, Pearson JF, Peterson RE, Reynolds MD, Rice JP, Runarsdottir V, Saccone NL, Sherva R, Silberg JL, Tarter RE, Tyrfingsson T, Wall TL, Webb BT, Werge T, Wetherill L, Wright MJ, Zellers S, Adams MJ, Bierut LJ, Boardman JD, Copeland WE, Farrer LA, Foroud TM, Gillespie NA, Grucza RA, Harris KM, Heath AC, Hesselbrock V, Hewitt JK, Hopfer CJ, Horwood J, Iacono WG, Johnson EO, Kendler KS, Kennedy MA, Kranzler HR, Madden PAF, Maes HH, Maher BS, Martin NG, McGue M, McIntosh AM, Medland SE, Nelson EC, Porjesz B, Riley BP, Stallings MC, Vanyukov MM, Vrieze S, Psychiatric Genomics Consortium Substance Use Disorders Workgroup, Davis LK, Bogdan R, Gelernter J, Edenberg HJ, Stefansson K, Børglum AD, Agrawal A The lancet. Psychiatry 33096046 Lancet Psychiatry 2020 Dec https://www.ncbi.nlm.nih.gov/pubmed/33096046
Association between childhood trauma and risk for obesity: a putative neurocognitive developmental pathway. Luo Q, Zhang L, Huang CC, Zheng Y, Kanen JW, Zhao Q, Yao Y, Quinlan EB, Jia T, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Sahakian BJ, Schumann G, Li F, Feng J, Desrivières S, Robbins TW, IMAGEN consortium BMC medicine 33054810 BMC Med 2020 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/33054810
Data-driven biomarkers outperform theory-based biomarkers in predicting stroke motor outcomes. Olafson ER, Sperber C, Jamison KW, Bowren MD Jr, Boes AD, Andrushko JW, Borich MR, Boyd LA, Cassidy JM, Conforto AB, Cramer SC, Dula AN, Geranmayeh F, Hordacre B, Jahanshad N, Kautz SA, Lo B, MacIntosh BJ, Piras F, Robertson AD, Seo NJ, Soekadar SR, Thomopoulos SI, Vecchio D, Weng TB, Westlye LT, Winstein CJ, Wittenberg GF, Wong KA, Thompson PM, Liew SL, Kuceyeski AF bioRxiv : the preprint server for biology 37693419 bioRxiv 2023 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/37693419
Regional, circuit and network heterogeneity of brain abnormalities in psychiatric disorders. Segal A, Parkes L, Aquino K, Kia SM, Wolfers T, Franke B, Hoogman M, Beckmann CF, Westlye LT, Andreassen OA, Zalesky A, Harrison BJ, Davey CG, Soriano-Mas C, Cardoner N, Tiego J, Yücel M, Braganza L, Suo C, Berk M, Cotton S, Bellgrove MA, Marquand AF, Fornito A Nature neuroscience 37580620 Nat Neurosci 2023 Sep https://www.ncbi.nlm.nih.gov/pubmed/37580620
Genotype-specific spinal cord damage in spinocerebellar ataxias: an ENIGMA-Ataxia study. Rezende TJR, Adanyaguh I, Barsottini OGP, Bender B, Cendes F, Coutinho L, Deistung A, Dogan I, Durr A, Fernandez-Ruiz J, Göricke SL, Grisoli M, Hernandez-Castillo CR, Lenglet C, Mariotti C, Martinez ARM, Massuyama BK, Mochel F, Nanetti L, Nigri A, Ono SE, Öz G, Pedroso JL, Reetz K, Synofzik M, Teive H, Thomopoulos SI, Thompson PM, Timmann D, van de Warrenburg BPC, van Gaalen J, França MC Jr, Harding IH Journal of neurology, neurosurgery, and psychiatry 38383154 J Neurol Neurosurg Psychiatry 2024 Jun 17 https://www.ncbi.nlm.nih.gov/pubmed/38383154
Normative modelling of brain morphometry across the lifespan with CentileBrain: algorithm benchmarking and model optimisation. Ge R, Yu Y, Qi YX, Fan YN, Chen S, Gao C, Haas SS, New F, Boomsma DI, Brodaty H, Brouwer RM, Buckner R, Caseras X, Crivello F, Crone EA, Erk S, Fisher SE, Franke B, Glahn DC, Dannlowski U, Grotegerd D, Gruber O, Hulshoff Pol HE, Schumann G, Tamnes CK, Walter H, Wierenga LM, Jahanshad N, Thompson PM, Frangou S, ENIGMA Lifespan Working Group The Lancet. Digital health 38395541 Lancet Digit Health 2024 Mar https://www.ncbi.nlm.nih.gov/pubmed/38395541
Adolescent to young adult longitudinal development of subcortical volumes in two European sites with four waves. Backhausen LL, Fröhner JH, Lemaître H, Artiges E, Martinot MP, Herting MM, Sticca F, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Nees F, Papadopoulos-Orfanos D, Poustka L, Hohmann S, Robinson L, Walter H, Winterer J, Whelan R, Schumann G, Martinot JL, Smolka MN, Vetter NC, IMAGEN Consortium Human brain mapping 38401132 Hum Brain Mapp 2024 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/38401132
The bidirectional effects between cognitive ability and brain morphology: A life course Mendelian randomization analysis. Korologou-Linden R, Schuurmans IK, Cecil CAM, White T, Banaschewski T, Bokde ALW, Desrivières S, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Holz N, Fröhner JH, Smolka M, Walter H, Winterer J, Whelan R, Schumann G, Howe LD, Ben-Shlomo Y, Davies NM, Anderson EL medRxiv : the preprint server for health sciences 38014064 medRxiv 2023 Nov 17 https://www.ncbi.nlm.nih.gov/pubmed/38014064
Examining the association between posttraumatic stress disorder and disruptions in cortical networks identified using data-driven methods. Yang J, Huggins AA, Sun D, Baird CL, Haswell CC, Frijling JL, Olff M, van Zuiden M, Koch SBJ, Nawijn L, Veltman DJ, Suarez-Jimenez B, Zhu X, Neria Y, Hudson AR, Mueller SC, Baker JT, Lebois LAM, Kaufman ML, Qi R, Lu GM, Říha P, Rektor I, Dennis EL, Ching CRK, Thomopoulos SI, Salminen LE, Jahanshad N, Thompson PM, Stein DJ, Koopowitz SM, Ipser JC, Seedat S, du Plessis S, van den Heuvel LL, Wang L, Zhu Y, Li G, Sierk A, Manthey A, Walter H, Daniels JK, Schmahl C, Herzog JI, Liberzon I, King A, Angstadt M, Davenport ND, Sponheim SR, Disner SG, Straube T, Hofmann D, Grupe DW, Nitschke JB, Davidson RJ, Larson CL, deRoon-Cassini TA, Blackford JU, Olatunji BO, Gordon EM, May G, Nelson SM, Abdallah CG, Levy I, Harpaz-Rotem I, Krystal JH, Morey RA, Sotiras A Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 38017161 Neuropsychopharmacology 2024 Feb https://www.ncbi.nlm.nih.gov/pubmed/38017161
Copy-number variants and polygenic risk for intelligence confer risk for autism spectrum disorder irrespective of their effects on cognitive ability. Schmilovich Z, Bourque VR, Douard E, Huguet G, Poulain C, Ross JP, Alipour P, Castonguay CÉ, Younis N, Jean-Louis M, Saci Z, Pausova Z, Paus T, Schuman G, Porteous D, Davies G, Redmond P, Harris SE, Deary IJ, Whalley H, Hayward C, Dion PA, Jacquemont S, Rouleau GA medRxiv : the preprint server for health sciences 38076919 medRxiv 2023 Nov 29 https://www.ncbi.nlm.nih.gov/pubmed/38076919
Author Correction: A shared neural basis underlying psychiatric comorbidity. Xie C, Xiang S, Shen C, Peng X, Kang J, Li Y, Cheng W, He S, Bobou M, Broulidakis MJ, van Noort BM, Zhang Z, Robinson L, Vaidya N, Winterer J, Zhang Y, King S, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Lemaître H, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Fröhner JH, Schmidt U, Sinclair J, Smolka MN, Stringaris A, Walter H, Whelan R, Desrivières S, Sahakian BJ, Robbins TW, Schumann G, Jia T, Feng J, IMAGEN Consortium, STRATIFY/ESTRA Consortium, ZIB Consortium Nature medicine 37558759 Nat Med 2023 Sep https://www.ncbi.nlm.nih.gov/pubmed/37558759
Mapping the Heterogeneous Phenotype of Schizophrenia and Bipolar Disorder Using Normative Models. Wolfers T, Doan NT, Kaufmann T, Alnæs D, Moberget T, Agartz I, Buitelaar JK, Ueland T, Melle I, Franke B, Andreassen OA, Beckmann CF, Westlye LT, Marquand AF JAMA psychiatry 30304337 JAMA Psychiatry 2018 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/30304337
ADAPTIVE GRADIENT DESCENT OPTIMIZATION OF INITIAL MOMENTA FOR GEODESIC SHOOTING IN DIFFEOMORPHISMS. Fleishman GM, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 30546823 Proc IEEE Int Symp Biomed Imaging 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/30546823
A Fast Method for Estimating Statistical Power of Multivariate GWAS in Real Case Scenarios: Examples from the Field of Imaging Genetics. Couvy-Duchesne B, Strike LT, McMahon KL, de Zubicaray GI, Thompson PM, Martin NG, Medland SE, Wright MJ Behavior genetics 30443694 Behav Genet 2019 Jan https://www.ncbi.nlm.nih.gov/pubmed/30443694
Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality. Soler Artigas M, Sánchez-Mora C, Rovira P, Richarte V, Garcia-Martínez I, Pagerols M, Demontis D, Stringer S, ADHD Group of the Psychiatric Genomics Consortium, International Cannabis Consortium, Vink JM, Børglum AD, Neale BM, Franke B, Faraone SV, Casas M, Ramos-Quiroga JA, Ribasés M Molecular psychiatry 30610198 Mol Psychiatry 2020 Oct https://www.ncbi.nlm.nih.gov/pubmed/30610198
Mega-Analysis of Gray Matter Volume in Substance Dependence: General and Substance-Specific Regional Effects. Mackey S, Allgaier N, Chaarani B, Spechler P, Orr C, Bunn J, Allen NB, Alia-Klein N, Batalla A, Blaine S, Brooks S, Caparelli E, Chye YY, Cousijn J, Dagher A, Desrivieres S, Feldstein-Ewing S, Foxe JJ, Goldstein RZ, Goudriaan AE, Heitzeg MM, Hester R, Hutchison K, Korucuoglu O, Li CR, London E, Lorenzetti V, Luijten M, Martin-Santos R, May A, Momenan R, Morales A, Paulus MP, Pearlson G, Rousseau ME, Salmeron BJ, Schluter R, Schmaal L, Schumann G, Sjoerds Z, Stein DJ, Stein EA, Sinha R, Solowij N, Tapert S, Uhlmann A, Veltman D, van Holst R, Whittle S, Wright MJ, Yücel M, Zhang S, Yurgelun-Todd D, Hibar DP, Jahanshad N, Evans A, Thompson PM, Glahn DC, Conrod P, Garavan H, ENIGMA Addiction Working Group The American journal of psychiatry 30336705 Am J Psychiatry 2019 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/30336705
Reply to: New Meta- and Mega-analyses of Magnetic Resonance Imaging Findings in Schizophrenia: Do They Really Increase Our Knowledge About the Nature of the Disease Process? van Erp TGM, Walton E, Hibar DP, Schmaal L, Jiang W, Glahn DC, Pearlson GD, Yao N, Fukunaga M, Hashimoto R, Okada N, Yamamori H, Clark VP, Mueller BA, de Zwarte SMC, Ophoff RA, van Haren NEM, Andreassen OA, Gurholt TP, Gruber O, Kraemer B, Richter A, Calhoun VD, Crespo-Facorro B, Roiz-Santiañez R, Tordesillas-Gutiérrez D, Loughland C, Catts S, Fullerton JM, Green MJ, Henskens F, Jablensky A, Mowry BJ, Pantelis C, Quidé Y, Schall U, Scott RJ, Cairns MJ, Seal M, Tooney PA, Rasser PE, Cooper G, Shannon Weickert C, Weickert TW, Hong E, Kochunov P, Gur RE, Gur RC, Ford JM, Macciardi F, Mathalon DH, Potkin SG, Preda A, Fan F, Ehrlich S, King MD, De Haan L, Veltman DJ, Assogna F, Banaj N, de Rossi P, Iorio M, Piras F, Spalletta G, Pomarol-Clotet E, Kelly S, Ciufolini S, Radua J, Murray R, Marques TR, Simmons A, Borgwardt S, Schönborn-Harrisberger F, Riecher-Rössler A, Smieskova R, Alpert KI, Bertolino A, Bonvino A, Di Giorgio A, Neilson E, Mayer AR, Yun JY, Cannon DM, Lebedeva I, Tomyshev AS, Akhadov T, Kaleda V, Fatouros-Bergman H, Flyckt L, Karolinska Schizophrenia Project, Rosa PGP, Serpa MH, Zanetti MV, Hoschl C, Skoch A, Spaniel F, Tomecek D, McIntosh AM, Whalley HC, Knöchel C, Oertel-Knöchel V, Howells FM, Stein DJ, Temmingh HS, Uhlmann A, Lopez-Jaramillo C, Dima D, Faskowitz JI, Gutman BA, Jahanshad N, Thompson PM, Turner JA Biological psychiatry 30470561 Biol Psychiatry 2019 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/30470561
Educational attainment polygenic scores are associated with cortical total surface area and regions important for language and memory. Mitchell BL, Cuéllar-Partida G, Grasby KL, Campos AI, Strike LT, Hwang LD, Okbay A, Thompson PM, Medland SE, Martin NG, Wright MJ, Rentería ME NeuroImage 32126298 Neuroimage 2020 May 15 https://www.ncbi.nlm.nih.gov/pubmed/32126298
Scanner invariant representations for diffusion MRI harmonization. Moyer D, Ver Steeg G, Tax CMW, Thompson PM Magnetic resonance in medicine 32250475 Magn Reson Med 2020 Oct https://www.ncbi.nlm.nih.gov/pubmed/32250475
An overview of the first 5 years of the ENIGMA obsessive-compulsive disorder working group: The power of worldwide collaboration. van den Heuvel OA, Boedhoe PSW, Bertolin S, Bruin WB, Francks C, Ivanov I, Jahanshad N, Kong XZ, Kwon JS, O'Neill J, Paus T, Patel Y, Piras F, Schmaal L, Soriano-Mas C, Spalletta G, van Wingen GA, Yun JY, Vriend C, Simpson HB, van Rooij D, Hoexter MQ, Hoogman M, Buitelaar JK, Arnold P, Beucke JC, Benedetti F, Bollettini I, Bose A, Brennan BP, De Nadai AS, Fitzgerald K, Gruner P, Grünblatt E, Hirano Y, Huyser C, James A, Koch K, Kvale G, Lazaro L, Lochner C, Marsh R, Mataix-Cols D, Morgado P, Nakamae T, Nakao T, Narayanaswamy JC, Nurmi E, Pittenger C, Reddy YCJ, Sato JR, Soreni N, Stewart SE, Taylor SF, Tolin D, Thomopoulos SI, Veltman DJ, Venkatasubramanian G, Walitza S, Wang Z, Thompson PM, Stein DJ, ENIGMA-OCD working group Human brain mapping 32154629 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32154629
Reproducible grey matter patterns index a multivariate, global alteration of brain structure in schizophrenia and bipolar disorder. Schwarz E, Doan NT, Pergola G, Westlye LT, Kaufmann T, Wolfers T, Brecheisen R, Quarto T, Ing AJ, Di Carlo P, Gurholt TP, Harms RL, Noirhomme Q, Moberget T, Agartz I, Andreassen OA, Bellani M, Bertolino A, Blasi G, Brambilla P, Buitelaar JK, Cervenka S, Flyckt L, Frangou S, Franke B, Hall J, Heslenfeld DJ, Kirsch P, McIntosh AM, Nöthen MM, Papassotiropoulos A, de Quervain DJ, Rietschel M, Schumann G, Tost H, Witt SH, Zink M, Meyer-Lindenberg A, IMAGEMEND Consortium, Karolinska Schizophrenia Project (KaSP) Consortium Translational psychiatry 30664633 Transl Psychiatry 2019 Jan 17 https://www.ncbi.nlm.nih.gov/pubmed/30664633
Altered Cortical Brain Structure and Increased Risk for Disease Seen Decades After Perinatal Exposure to Maternal Smoking: A Study of 9000 Adults in the UK Biobank. Salminen LE, Wilcox RR, Zhu AH, Riedel BC, Ching CRK, Rashid F, Thomopoulos SI, Saremi A, Harrison MB, Ragothaman A, Knight V, Boyle CP, Medland SE, Thompson PM, Jahanshad N Cerebral cortex (New York, N.Y. : 1991) 31271414 Cereb Cortex 2019 Dec 17 https://www.ncbi.nlm.nih.gov/pubmed/31271414
Genomic GPS: using genetic distance from individuals to public data for genomic analysis without disclosing personal genomes. Kim K, Baik H, Jang CS, Roh JK, Eskin E, Han B Genome biology 31455387 Genome Biol 2019 Aug 27 https://www.ncbi.nlm.nih.gov/pubmed/31455387
White matter disturbances in major depressive disorder: a coordinated analysis across 20 international cohorts in the ENIGMA MDD working group. van Velzen LS, Kelly S, Isaev D, Aleman A, Aftanas LI, Bauer J, Baune BT, Brak IV, Carballedo A, Connolly CG, Couvy-Duchesne B, Cullen KR, Danilenko KV, Dannlowski U, Enneking V, Filimonova E, Förster K, Frodl T, Gotlib IH, Groenewold NA, Grotegerd D, Harris MA, Hatton SN, Hawkins EL, Hickie IB, Ho TC, Jansen A, Kircher T, Klimes-Dougan B, Kochunov P, Krug A, Lagopoulos J, Lee R, Lett TA, Li M, MacMaster FP, Martin NG, McIntosh AM, McLellan Q, Meinert S, Nenadić I, Osipov E, Penninx BWJH, Portella MJ, Repple J, Roos A, Sacchet MD, Sämann PG, Schnell K, Shen X, Sim K, Stein DJ, van Tol MJ, Tomyshev AS, Tozzi L, Veer IM, Vermeiren R, Vives-Gilabert Y, Walter H, Walter M, van der Wee NJA, van der Werff SJA, Schreiner MW, Whalley HC, Wright MJ, Yang TT, Zhu A, Veltman DJ, Thompson PM, Jahanshad N, Schmaal L Molecular psychiatry 31471575 Mol Psychiatry 2020 Jul https://www.ncbi.nlm.nih.gov/pubmed/31471575
Inferring cell-type-specific causal gene regulatory networks during human neurogenesis. Aygün N, Liang D, Crouse WL, Keele GR, Love MI, Stein JL Genome biology 37254169 Genome Biol 2023 May 30 https://www.ncbi.nlm.nih.gov/pubmed/37254169
Differential associations of adolescent versus young adult cannabis initiation with longitudinal brain change and behavior. Albaugh MD, Owens MM, Juliano A, Ottino-Gonzalez J, Cupertino R, Cao Z, Mackey S, Lepage C, Rioux P, Evans A, Banaschewski T, Bokde ALW, Conrod P, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Potter A, Garavan H, IMAGEN Consortium Molecular psychiatry 37369720 Mol Psychiatry 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/37369720
Subcortical Brain Alterations in Carriers of Genomic Copy Number Variants. Kumar K, Modenato C, Moreau C, Ching CRK, Harvey A, Martin-Brevet S, Huguet G, Jean-Louis M, Douard E, Martin CO, Younis N, Tamer P, Maillard AM, Rodriguez-Herreros B, Pain A, 16p11.2 European Consortium, Simons Searchlight Consortium, Kushan L, Isaev D, Alpert K, Ragothaman A, Turner JA, Wang L, Ho TC, Schmaal L, Silva AI, van den Bree MBM, Linden DEJ, Owen MJ, Hall J, Lippé S, Dumas G, Draganski B, Gutman BA, Sønderby IE, Andreassen OA, Schultz LM, Almasy L, Glahn DC, Bearden CE, Thompson PM, Jacquemont S The American journal of psychiatry 37434504 Am J Psychiatry 2023 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/37434504
Regional patterns of human cortex development correlate with underlying neurobiology. Lotter LD, Saberi A, Hansen JY, Misic B, Paquola C, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillère ML, Artiges E, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, IMAGEN Consortium, Nees F, Banaschewski T, Eickhoff SB, Dukart J bioRxiv : the preprint server for biology 37205539 bioRxiv 2024 Aug 10 https://www.ncbi.nlm.nih.gov/pubmed/37205539
Longitudinal Associations between Peer and Family Relationships, Emotional Symptoms, and Regional Brain Volume across Adolescence. Stepanous J, Munford L, Qualter P, Nees F, Elliott R, IMAGEN Consortium Journal of youth and adolescence 36807228 J Youth Adolesc 2023 Apr https://www.ncbi.nlm.nih.gov/pubmed/36807228
Rare CNVs and phenome-wide profiling highlight brain structural divergence and phenotypical convergence. Kopal J, Kumar K, Saltoun K, Modenato C, Moreau CA, Martin-Brevet S, Huguet G, Jean-Louis M, Martin CO, Saci Z, Younis N, Tamer P, Douard E, Maillard AM, Rodriguez-Herreros B, Pain A, Richetin S, Kushan L, Silva AI, van den Bree MBM, Linden DEJ, Owen MJ, Hall J, Lippé S, Draganski B, Sønderby IE, Andreassen OA, Glahn DC, Thompson PM, Bearden CE, Jacquemont S, Bzdok D Nature human behaviour 36864136 Nat Hum Behav 2023 Jun https://www.ncbi.nlm.nih.gov/pubmed/36864136
Social environment and brain structure in adolescent mental health: A cross-sectional structural equation modelling study using IMAGEN data. Stepanous J, Munford L, Qualter P, Banaschewski T, Nees F, Elliott R, IMAGEN Consortium PloS one 36603003 PLoS One 2023 https://www.ncbi.nlm.nih.gov/pubmed/36603003
Mapping the coupling between tract reachability and cortical geometry of the human brain. Li D, Zalesky A, Wang Y, Wang H, Ma L, Cheng L, Banaschewski T, Barker GJ, Bokde ALW, Brühl R, Desrivières S, Flor H, Garavan H, Gowland P, Grigis A, Heinz A, Lemaître H, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Jia T, Chu C, Fan L, IMAGEN Consortium Nature communications 40796752 Nat Commun 2025 Aug 12 https://www.ncbi.nlm.nih.gov/pubmed/40796752
Associations between epilepsy-related polygenic risk and brain morphology in childhood. Ngo A, Liu L, Larivière S, Kebets V, Fett S, Weber CF, Royer J, Yu E, Rodríguez-Cruces R, Zhang Z, Ooi LQR, Yeo BTT, Frauscher B, Paquola C, Caligiuri ME, Gambardella A, Concha L, Keller SS, Cendes F, Yasuda CL, Bonilha L, Gleichgerrcht E, Focke NKN, Kotikalapudi R, O'Brien TJ, Sinclair B, Vivash L, Desmond PM, Lui E, Vaudano AE, Meletti S, Kälviäinen R, Soltanian-Zadeh H, Winston GP, Tiwari VK, Kreilkamp BAK, Lenge M, Guerrini R, Hamandi K, Rüber T, Bauer T, Devinsky O, Striano P, Kaestner E, Hatton SN, Caciagli L, Kirschner M, Duncan JS, Thompson PM, ENIGMA Consortium Epilepsy Working Group, McDonald CR, Sisodiya SM, Bernasconi N, Bernasconi A, Gan-Or Z, Bernhardt BC Brain : a journal of neurology 40811581 Brain 2026 Feb 7 https://www.ncbi.nlm.nih.gov/pubmed/40811581
BMI-related cortical morphometry changes are associated with altered white matter structure. Medic N, Kochunov P, Ziauddeen H, Ersche KD, Nathan PJ, Ronan L, Fletcher PC International journal of obesity (2005) 30568264 Int J Obes (Lond) 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/30568264
Mapping adolescent reward anticipation, receipt, and prediction error during the monetary incentive delay task. Cao Z, Bennett M, Orr C, Icke I, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Schumann G, Whelan R, IMAGEN Consortium Human brain mapping 30240509 Hum Brain Mapp 2019 Jan https://www.ncbi.nlm.nih.gov/pubmed/30240509
Genetic risk for schizophrenia and autism, social impairment and developmental pathways to psychosis. Velthorst E, Froudist-Walsh S, Stahl E, Ruderfer D, Ivanov I, Buxbaum J, iPSYCH-Broad ASD Group, the IMAGEN consortium, Banaschewski T, Bokde ALW, Dipl-Psych UB, Büchel C, Quinlan EB, Desrivières S, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot MP, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Reichenberg A Translational psychiatry 30258131 Transl Psychiatry 2018 Sep 26 https://www.ncbi.nlm.nih.gov/pubmed/30258131
Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. Gunz P, Tilot AK, Wittfeld K, Teumer A, Shapland CY, van Erp TGM, Dannemann M, Vernot B, Neubauer S, Guadalupe T, Fernández G, Brunner HG, Enard W, Fallon J, Hosten N, Völker U, Profico A, Di Vincenzo F, Manzi G, Kelso J, St Pourcain B, Hublin JJ, Franke B, Pääbo S, Macciardi F, Grabe HJ, Fisher SE Current biology : CB 30836076 Curr Biol 2019 Mar 4 https://www.ncbi.nlm.nih.gov/pubmed/30836076
Exploration of Shared Genetic Architecture Between Subcortical Brain Volumes and Anorexia Nervosa. Walton E, Hibar D, Yilmaz Z, Jahanshad N, Cheung J, Batury VL, Seitz J, Bulik CM, PGC-ED, ENIGMA Genetics Working Group, Thompson PM, Ehrlich S Molecular neurobiology 30519816 Mol Neurobiol 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/30519816
Cross disorder comparisons of brain structure in schizophrenia, bipolar disorder, major depressive disorder, and 22q11.2 deletion syndrome: A review of ENIGMA findings. Cheon EJ, Bearden CE, Sun D, Ching CRK, Andreassen OA, Schmaal L, Veltman DJ, Thomopoulos SI, Kochunov P, Jahanshad N, Thompson PM, Turner JA, van Erp TGM Psychiatry and clinical neurosciences 35119167 Psychiatry Clin Neurosci 2022 May https://www.ncbi.nlm.nih.gov/pubmed/35119167
Genetics impact risk of Alzheimer's disease through mechanisms modulating structural brain morphology in late life. Korologou-Linden R, Xu B, Coulthard E, Walton E, Wearn A, Hemani G, White T, Cecil C, Sharp T, Tiemeier H, Banaschewski T, Bokde A, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Millenet S, Fröhner JH, Smolka M, Walter H, Winterer J, Whelan R, Schumann G, Howe LD, Ben-Shlomo Y, Davies NM, Anderson EL Journal of neurology, neurosurgery, and psychiatry 38663994 J Neurol Neurosurg Psychiatry 2025 Mar 24 https://www.ncbi.nlm.nih.gov/pubmed/38663994
Adolescent maturation of cortical excitation-inhibition balance based on individualized biophysical network modeling. Saberi A, Wischnewski KJ, Jung K, Lotter LD, Schaare HL, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Lemaitre H, Poustka L, Hohmann S, Holz N, Baeuchl C, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, IMAGEN Consortium, Paus T, Dukart J, Bernhardt BC, Popovych OV, Eickhoff SB, Valk SL bioRxiv : the preprint server for biology 38948771 bioRxiv 2024 Jun 18 https://www.ncbi.nlm.nih.gov/pubmed/38948771
Differing impact of the COVID-19 pandemic on youth mental health: combined population and clinical study. Qi L, Zhang Z, Robinson L, Bobou M, Gourlan C, Winterer J, Adams R, Agunbiade K, Zhang Y, King S, Vaidya N, Artiges E, Banaschewski T, Bokde ALW, Broulidakis MJ, Brühl R, Flor H, Fröhner JH, Garavan H, Grigis A, Heinz A, Hohmann S, Martinot MP, Millenet S, Nees F, van Noort BM, Orfanos DP, Poustka L, Sinclair J, Smolka MN, Whelan R, Stringaris A, Walter H, Martinot JL, Schumann G, Schmidt U, Desrivières S, IMAGEN Consortium, ESTRA Consortium and STRATIFY Consortium BJPsych open 37981567 BJPsych Open 2023 Nov 20 https://www.ncbi.nlm.nih.gov/pubmed/37981567
Smaller total and subregional cerebellar volumes in posttraumatic stress disorder: a mega-analysis by the ENIGMA-PGC PTSD workgroup. Huggins AA, Baird CL, Briggs M, Laskowitz S, Hussain A, Fouda S, Haswell C, Sun D, Salminen LE, Jahanshad N, Thomopoulos SI, Veltman DJ, Frijling JL, Olff M, van Zuiden M, Koch SBJ, Nawjin L, Wang L, Zhu Y, Li G, Stein DJ, Ipser J, Seedat S, du Plessis S, van den Heuvel LL, Suarez-Jimenez B, Zhu X, Kim Y, He X, Zilcha-Mano S, Lazarov A, Neria Y, Stevens JS, Ressler KJ, Jovanovic T, van Rooij SJH, Fani N, Hudson AR, Mueller SC, Sierk A, Manthey A, Walter H, Daniels JK, Schmahl C, Herzog JI, Říha P, Rektor I, Lebois LAM, Kaufman ML, Olson EA, Baker JT, Rosso IM, King AP, Liberzon I, Angstadt M, Davenport ND, Sponheim SR, Disner SG, Straube T, Hofmann D, Qi R, Lu GM, Baugh LA, Forster GL, Simons RM, Simons JS, Magnotta VA, Fercho KA, Maron-Katz A, Etkin A, Cotton AS, O'Leary EN, Xie H, Wang X, Quidé Y, El-Hage W, Lissek S, Berg H, Bruce S, Cisler J, Ross M, Herringa RJ, Grupe DW, Nitschke JB, Davidson RJ, Larson CL, deRoon-Cassini TA, Tomas CW, Fitzgerald JM, Blackford JU, Olatunji BO, Kremen WS, Lyons MJ, Franz CE, Gordon EM, May G, Nelson SM, Abdallah CG, Levy I, Harpaz-Rotem I, Krystal JH, Dennis EL, Tate DF, Cifu DX, Walker WC, Wilde EA, Harding IH, Kerestes R, Thompson PM, Morey R Molecular psychiatry 38195980 Mol Psychiatry 2024 Mar https://www.ncbi.nlm.nih.gov/pubmed/38195980
Multi-site benchmark classification of major depressive disorder using machine learning on cortical and subcortical measures. Belov V, Erwin-Grabner T, Aghajani M, Aleman A, Amod AR, Basgoze Z, Benedetti F, Besteher B, Bülow R, Ching CRK, Connolly CG, Cullen K, Davey CG, Dima D, Dols A, Evans JW, Fu CHY, Gonul AS, Gotlib IH, Grabe HJ, Groenewold N, Hamilton JP, Harrison BJ, Ho TC, Mwangi B, Jaworska N, Jahanshad N, Klimes-Dougan B, Koopowitz SM, Lancaster T, Li M, Linden DEJ, MacMaster FP, Mehler DMA, Melloni E, Mueller BA, Ojha A, Oudega ML, Penninx BWJH, Poletti S, Pomarol-Clotet E, Portella MJ, Pozzi E, Reneman L, Sacchet MD, Sämann PG, Schrantee A, Sim K, Soares JC, Stein DJ, Thomopoulos SI, Uyar-Demir A, van der Wee NJA, van der Werff SJA, Völzke H, Whittle S, Wittfeld K, Wright MJ, Wu MJ, Yang TT, Zarate C, Veltman DJ, Schmaal L, Thompson PM, Goya-Maldonado R, ENIGMA Major Depressive Disorder working group Scientific reports 38212349 Sci Rep 2024 Jan 11 https://www.ncbi.nlm.nih.gov/pubmed/38212349
Investigating grey matter volumetric trajectories through the lifespan at the individual level. Shi R, Xiang S, Jia T, Robbins TW, Kang J, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Lin X, Sahakian BJ, Feng J, IMAGEN Consortium Nature communications 39009591 Nat Commun 2024 Jul 15 https://www.ncbi.nlm.nih.gov/pubmed/39009591
ENIGMA-Chronic Pain: a worldwide initiative to identify brain correlates of chronic pain. Quidé Y, Jahanshad N, Andoh J, Antoniou G, Apkarian AV, Ashar YK, Badran BW, Baird CL, Baxter L, Bell TR, Blanco-Hinojo L, Borckardt J, Cheung CL, Ciampi de Andrade D, Couto BA, Cox SR, Cruz-Almeida Y, Dannlowski U, De Martino E, de Tommaso M, Deus J, Domin M, Egorova-Brumley N, Elliott J, Fanton S, Fauchon C, Flor H, Franz CE, Gatt JM, Gerdhem P, Gilman JM, Gollub RL, Govind V, Graven-Nielsen T, Håkansson G, Hales T, Haswell C, Heukamp NJ, Hu L, Huang L, Hussain A, Jensen K, Kircher T, Kremen WS, Leehr EJ, Lindquist M, Loggia ML, Lotze M, Martucci KT, Meeker TJ, Meinert S, Millard SK, Morey RA, Murillo C, Nees F, Nenadic I, Park HRP, Peng X, Ploner M, Pujol J, Robayo LE, Salan T, Seminowicz DA, Serian A, Slater R, Stein F, Stevens J, Strauss S, Sun D, Vachon-Presseau E, Valdes-Hernandez PA, Vanneste S, Vernon M, Verriotis M, Wager TD, Widerstrom-Noga E, Woodbury A, Zeidan F, Bhatt RR, Ching CRK, Haddad E, Thomopoulos SI, Thompson PM, Gustin SM Pain 39058957 Pain 2024 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/39058957
Copy-number variants and polygenic risk for intelligence confer risk for autism spectrum disorder irrespective of their effects on cognitive ability. Schmilovich Z, Bourque VR, Douard E, Huguet G, Poulain C, Ross JP, Alipour P, Castonguay CÉ, Younis N, Jean-Louis M, Saci Z, Pausova Z, Paus T, Schuman G, Porteous D, Davies G, Redmond P, Harris SE, Deary IJ, Whalley H, Hayward C, Dion PA, Jacquemont S, Rouleau GA Frontiers in psychiatry 38751416 Front Psychiatry 2024 https://www.ncbi.nlm.nih.gov/pubmed/38751416
Cortical and Subcortical Brain Alterations in Specific Phobia and Its Animal and Blood-Injection-Injury Subtypes: A Mega-Analysis From the ENIGMA Anxiety Working Group. Hilbert K, Boeken OJ, Langhammer T, Groenewold NA, Bas-Hoogendam JM, Aghajani M, Zugman A, Åhs F, Arolt V, Beesdo-Baum K, Björkstrand J, Blackford JU, Blanco-Hinojo L, Böhnlein J, Bülow R, Cano M, Cardoner N, Caseras X, Dannlowski U, Domschke K, Fehm L, Feola B, Fredrikson M, Goossens L, Grabe HJ, Grotegerd D, Gur RE, Hamm AO, Harrewijn A, Heinig I, Herrmann MJ, Hofmann D, Jackowski AP, Jansen A, Kaczkurkin AN, Kindt M, Kingsley EN, Kircher T, Klahn AL, Koelkebeck K, Krug A, Kugel H, Larsen B, Leehr EJ, Leonhardt L, Lotze M, Margraf J, Michałowski J, Muehlhan M, Nenadić I, Pan PM, Pauli P, Peñate W, Pittig A, Plag J, Pujol J, Richter J, Rivero FL, Salum GA, Satterthwaite TD, Schäfer A, Schäfer J, Schienle A, Schneider S, Schrammen E, Schruers K, Schulz SM, Seidl E, Stark RM, Stein F, Straube B, Straube T, Ströhle A, Suchan B, Thomopoulos SI, Ventura-Bort C, Visser R, Völzke H, Wabnegger A, Wannemüller A, Wendt J, Wiemer J, Wittchen HU, Wittfeld K, Wright B, Yang Y, Zilverstand A, Zwanzger P, Veltman DJ, Winkler AM, Pine DS, Jahanshad N, Thompson PM, Stein DJ, Van der Wee NJA, Lueken U The American journal of psychiatry 38859702 Am J Psychiatry 2024 Aug 1 https://www.ncbi.nlm.nih.gov/pubmed/38859702
Genetic-Dependent Brain Signatures of Resilience: Interactions among Childhood Abuse, Genetic Risks and Brain Function. Lu H, Rolls ET, Liu H, Stein DJ, Sahakian BJ, Elliott R, Jia T, Xie C, Xiang S, Wang N, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Lemaitre H, Poustka L, Hohmann S, Holz N, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Feng J, Luo Q, IMAGEN Consortium bioRxiv : the preprint server for biology 39345616 bioRxiv 2024 Sep 16 https://www.ncbi.nlm.nih.gov/pubmed/39345616
Neurocognitive characterization of behaviour and mental illness through time-varying brain network analysis. Chang X, Jia T, Fu Z, Xiang S, Xia Y, Xie C, Zou J, Cao M, Zhang J, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Papadopoulos Orfanos D, Frouin V, Poustka L, Hohmann S, Baeuchl C, Smolka MN, Vaidya N, Walter H, Whelan R, Feng J, Calhoun VD, Schumann G, IMAGEN Consortium, EnvironMENTAL Consortium Nature communications 41633990 Nat Commun 2026 Feb 3 https://www.ncbi.nlm.nih.gov/pubmed/41633990
Mirror effect of genomic deletions and duplications on cognitive ability across the human cerebral cortex. Kumar K, Kazem S, Huguet G, Engchuan W, Kopal J, Renne T, Shanta O, Thiruvahindrapuram B, MacDonald J, Mollon J, Schultz LM, Knowles EEM, Porteous D, Davies G, Redmond P, Harris S, Cox S, Schumann G, Pausova Z, Greenwood C, Paus T, Scherer S, Almasy L, Sebat J, Glahn D, Dumas G, Jacquemont S Research square 41356361 Res Sq 2025 Nov 28 https://www.ncbi.nlm.nih.gov/pubmed/41356361
Brain Aging in Specific Phobia: An ENIGMA-Anxiety Mega-Analysis. Blake KV, Hilbert K, Ipser JC, Han LKM, Bas-Hoogendam JM, Åhs F, Bauer J, Beesdo-Baum K, Björkstrand J, Blanco-Hinojo L, Böhnlein J, Bülow R, Cano M, Cardoner N, Caseras X, Dannlowski U, Fredrikson M, Goossens L, Grabe HJ, Grotegerd D, Hahn T, Hamm A, Heinig I, Herrmann MJ, Hofmann D, Jamalabadi H, Jansen A, Kindt M, Kircher T, Klahn AL, Koelkebeck K, Krug A, Leehr EJ, Lotze M, Margraf J, Muehlhan M, Nenadić I, Peñate W, Pittig A, Plag J, Pujol J, Richter J, Ridderbusch IC, Rivero F, Schäfer A, Schäfer J, Schienle A, Schrammen E, Schruers K, Seidl E, Stark RM, Straube B, Straube T, Ströhle A, Suchan B, Teutenberg L, Thomopoulos SI, Ventura-Bort C, Visser RM, Völzke H, Wabnegger A, Wannemüller A, Wendt J, Wittchen HU, Wittfeld K, Yang Y, Zilverstand A, Zwanzger P, Schmaal L, Aghajani M, Pine DS, Thompson PM, van der Wee NJA, Stein DJ, Lueken U, Groenewold NA Human brain mapping 42403080 Hum Brain Mapp 2026 Jul https://www.ncbi.nlm.nih.gov/pubmed/42403080
Cortical morphometry might predict currently prescribed vs. discontinued medications in bipolar disorder, even after controlling for the cumulative dose effects: An ENIGMA mega-analysis. Fortea L, Rivas-Fernández MÁ, Solanes A, King S, Nabulsi L, Alda M, Alexander N, Bauer J, Benedetti F, Borgers T, Bravi B, Bollettini I, Canales-Rodríguez EJ, Cannon DM, Dannlowski U, Di Giorgio A, Flinkenflügel K, Fuentes-Claramonte P, Furlong L, Gotlib IH, Green MJ, Grotegerd D, Haarman BCM, Hahn T, Hajek T, Hidalgo-Mazzei D, Howells F, Jamalabadi H, Jansen A, Kang MJY, Karantonis JA, Karuk A, Kircher T, Leehr EJ, Im Y, McWhinney S, Meinert S, Melloni EM, Nenadić I, Pfennig A, Poletti S, Pomarol-Clotet E, Quidé Y, Rossell SL, Sacchet MD, Salvador R, Sambataro F, Sarró S, Scheffler F, Sim K, Stein DJ, Stein F, Straube B, Temmingh H, Teutenberg L, Thomas-Odenthal F, Thomopoulos SI, Van Rheenen TE, Vilajosana E, Zeng LL, Andreassen OA, Vieta E, Thompson PM, McDonald C, Ching CRK, Radua J, ENIGMA Bipolar Disorder Working Group Molecular psychiatry 41896364 Mol Psychiatry 2026 Aug https://www.ncbi.nlm.nih.gov/pubmed/41896364
Penalized least squares regression methods and applications to neuroimaging. Bunea F, She Y, Ombao H, Gongvatana A, Devlin K, Cohen R NeuroImage 21167288 Neuroimage 2011 Apr 15 https://www.ncbi.nlm.nih.gov/pubmed/21167288
Altered relationships between age and functional brain activation in adolescents at clinical high risk for psychosis. Karlsgodt KH, van Erp TG, Bearden CE, Cannon TD Psychiatry research 24144510 Psychiatry Res 2014 Jan 30 https://www.ncbi.nlm.nih.gov/pubmed/24144510
EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING. Zhang J, Fan Y, Li Q, Thompson PM, Ye J, Wang Y Proceedings. IEEE International Symposium on Biomedical Imaging 28959379 Proc IEEE Int Symp Biomed Imaging 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/28959379
Structural Neuroimaging of Anorexia Nervosa: Future Directions in the Quest for Mechanisms Underlying Dynamic Alterations. King JA, Frank GKW, Thompson PM, Ehrlich S Biological psychiatry 28967386 Biol Psychiatry 2018 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/28967386
APPROXIMATING PRINCIPAL GENETIC COMPONENTS OF SUBCORTICAL SHAPE. Gutman BA, Pizzagalli F, Jahanshad N, Wright MJ, McMahon KL, de Zubicaray G, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 29201284 Proc IEEE Int Symp Biomed Imaging 2017 https://www.ncbi.nlm.nih.gov/pubmed/29201284
Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure. Chen CH, Wang Y, Lo MT, Schork A, Fan CC, Holland D, Kauppi K, Smeland OB, Djurovic S, Sanyal N, Hibar DP, Thompson PM, Thompson WK, Andreassen OA, Dale AM Scientific reports 29147026 Sci Rep 2017 Nov 16 https://www.ncbi.nlm.nih.gov/pubmed/29147026
Diffusion MRI in pediatric brain injury. Dennis EL, Babikian T, Giza CC, Thompson PM, Asarnow RF Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery 29149383 Childs Nerv Syst 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/29149383
Attention deficit hyperactivity disorder symptoms as antecedents of later psychotic outcomes in 22q11.2 deletion syndrome. Niarchou M, Chawner SJRA, Fiksinski A, Vorstman JAS, Maeder J, Schneider M, Eliez S, Armando M, Pontillo M, Vicari S, McDonald-McGinn DM, Emanuel BS, Zackai EH, Bearden CE, Shashi V, Hooper SR, Owen MJ, Gur RE, Wray NR, van den Bree MBM, Thapar A, International 22q11.2 Deletion Syndrome Brain and Behavior Consortium Schizophrenia research 30093352 Schizophr Res 2019 Feb https://www.ncbi.nlm.nih.gov/pubmed/30093352
Using structural MRI to identify bipolar disorders - 13 site machine learning study in 3020 individuals from the ENIGMA Bipolar Disorders Working Group. Nunes A, Schnack HG, Ching CRK, Agartz I, Akudjedu TN, Alda M, Alnæs D, Alonso-Lana S, Bauer J, Baune BT, Bøen E, Bonnin CDM, Busatto GF, Canales-Rodríguez EJ, Cannon DM, Caseras X, Chaim-Avancini TM, Dannlowski U, Díaz-Zuluaga AM, Dietsche B, Doan NT, Duchesnay E, Elvsåshagen T, Emden D, Eyler LT, Fatjó-Vilas M, Favre P, Foley SF, Fullerton JM, Glahn DC, Goikolea JM, Grotegerd D, Hahn T, Henry C, Hibar DP, Houenou J, Howells FM, Jahanshad N, Kaufmann T, Kenney J, Kircher TTJ, Krug A, Lagerberg TV, Lenroot RK, López-Jaramillo C, Machado-Vieira R, Malt UF, McDonald C, Mitchell PB, Mwangi B, Nabulsi L, Opel N, Overs BJ, Pineda-Zapata JA, Pomarol-Clotet E, Redlich R, Roberts G, Rosa PG, Salvador R, Satterthwaite TD, Soares JC, Stein DJ, Temmingh HS, Trappenberg T, Uhlmann A, van Haren NEM, Vieta E, Westlye LT, Wolf DH, Yüksel D, Zanetti MV, Andreassen OA, Thompson PM, Hajek T, ENIGMA Bipolar Disorders Working Group Molecular psychiatry 30171211 Mol Psychiatry 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/30171211
Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. Wu Y, Hormozdiari F, Joo JWJ, Eskin E Journal of computational biology : a journal of computational molecular cell biology 30272994 J Comput Biol 2019 Nov https://www.ncbi.nlm.nih.gov/pubmed/30272994
Extending the Construct Network of Trait Disinhibition to the Neuroimaging Domain: Validation of a Bridging Scale for Use in the European IMAGEN Project. Brislin SJ, Patrick CJ, Flor H, Nees F, Heinrich A, Drislane LE, Yancey JR, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Papadopoulos Orfanos D, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Conrod P, Stringaris A, Struve M, van Noort B, Grimmer Y, Fadai T, Schumann G, Foell J Assessment 29557190 Assessment 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/29557190
Interaction between striatal volume and DAT1 polymorphism predicts working memory development during adolescence. Nemmi F, Nymberg C, Darki F, Banaschewski T, Bokde ALW, Büchel C, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Martinot JL, Nees F, Paus T, Smolka MN, Robbins TW, Schumann G, Klingberg T, IMAGEN consortium Developmental cognitive neuroscience 29567584 Dev Cogn Neurosci 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/29567584
Investigating the differential contributions of sex and brain size to gray matter asymmetry. Kurth F, Thompson PM, Luders E Cortex; a journal devoted to the study of the nervous system and behavior 29287244 Cortex 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/29287244
Neuroimaging of the Injured Pediatric Brain: Methods and New Lessons. Dennis EL, Babikian T, Giza CC, Thompson PM, Asarnow RF The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry 29488436 Neuroscientist 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/29488436
Magnetic resonance spectroscopy of fiber tracts in children with traumatic brain injury: A combined MRS - Diffusion MRI study. Dennis EL, Babikian T, Alger J, Rashid F, Villalon-Reina JE, Jin Y, Olsen A, Mink R, Babbitt C, Johnson J, Giza CC, Thompson PM, Asarnow RF Human brain mapping 29749094 Hum Brain Mapp 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/29749094
Whole Brain Magnetic Resonance Spectroscopic Determinants of Functional Outcomes in Pediatric Moderate/Severe Traumatic Brain Injury. Babikian T, Alger JR, Ellis-Blied MU, Giza CC, Dennis E, Olsen A, Mink R, Babbitt C, Johnson J, Thompson PM, Asarnow RF Journal of neurotrauma 29649959 J Neurotrauma 2018 Jul 15 https://www.ncbi.nlm.nih.gov/pubmed/29649959
Significant concordance of genetic variation that increases both the risk for obsessive-compulsive disorder and the volumes of the nucleus accumbens and putamen. Hibar DP, Cheung JW, Medland SE, Mufford MS, Jahanshad N, Dalvie S, Ramesar R, Stewart E, van den Heuvel OA, Pauls DL, Knowles JA, Stein DJ, Thompson PM, Enhancing Neuro Imaging Genetics through Meta Analysis (ENIGMA) Consortium and International Obsessive Compulsive Disorder Foundation Genetics Collaborative (IOCDF-GC) The British journal of psychiatry : the journal of mental science 29947313 Br J Psychiatry 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/29947313
Cortical Brain Abnormalities in 4474 Individuals With Schizophrenia and 5098 Control Subjects via the Enhancing Neuro Imaging Genetics Through Meta Analysis (ENIGMA) Consortium. van Erp TGM, Walton E, Hibar DP, Schmaal L, Jiang W, Glahn DC, Pearlson GD, Yao N, Fukunaga M, Hashimoto R, Okada N, Yamamori H, Bustillo JR, Clark VP, Agartz I, Mueller BA, Cahn W, de Zwarte SMC, Hulshoff Pol HE, Kahn RS, Ophoff RA, van Haren NEM, Andreassen OA, Dale AM, Doan NT, Gurholt TP, Hartberg CB, Haukvik UK, Jørgensen KN, Lagerberg TV, Melle I, Westlye LT, Gruber O, Kraemer B, Richter A, Zilles D, Calhoun VD, Crespo-Facorro B, Roiz-Santiañez R, Tordesillas-Gutiérrez D, Loughland C, Carr VJ, Catts S, Cropley VL, Fullerton JM, Green MJ, Henskens FA, Jablensky A, Lenroot RK, Mowry BJ, Michie PT, Pantelis C, Quidé Y, Schall U, Scott RJ, Cairns MJ, Seal M, Tooney PA, Rasser PE, Cooper G, Shannon Weickert C, Weickert TW, Morris DW, Hong E, Kochunov P, Beard LM, Gur RE, Gur RC, Satterthwaite TD, Wolf DH, Belger A, Brown GG, Ford JM, Macciardi F, Mathalon DH, O'Leary DS, Potkin SG, Preda A, Voyvodic J, Lim KO, McEwen S, Yang F, Tan Y, Tan S, Wang Z, Fan F, Chen J, Xiang H, Tang S, Guo H, Wan P, Wei D, Bockholt HJ, Ehrlich S, Wolthusen RPF, King MD, Shoemaker JM, Sponheim SR, De Haan L, Koenders L, Machielsen MW, van Amelsvoort T, Veltman DJ, Assogna F, Banaj N, de Rossi P, Iorio M, Piras F, Spalletta G, McKenna PJ, Pomarol-Clotet E, Salvador R, Corvin A, Donohoe G, Kelly S, Whelan CD, Dickie EW, Rotenberg D, Voineskos AN, Ciufolini S, Radua J, Dazzan P, Murray R, Reis Marques T, Simmons A, Borgwardt S, Egloff L, Harrisberger F, Riecher-Rössler A, Smieskova R, Alpert KI, Wang L, Jönsson EG, Koops S, Sommer IEC, Bertolino A, Bonvino A, Di Giorgio A, Neilson E, Mayer AR, Stephen JM, Kwon JS, Yun JY, Cannon DM, McDonald C, Lebedeva I, Tomyshev AS, Akhadov T, Kaleda V, Fatouros-Bergman H, Flyckt L, Karolinska Schizophrenia Project, Busatto GF, Rosa PGP, Serpa MH, Zanetti MV, Hoschl C, Skoch A, Spaniel F, Tomecek D, Hagenaars SP, McIntosh AM, Whalley HC, Lawrie SM, Knöchel C, Oertel-Knöchel V, Stäblein M, Howells FM, Stein DJ, Temmingh HS, Uhlmann A, Lopez-Jaramillo C, Dima D, McMahon A, Faskowitz JI, Gutman BA, Jahanshad N, Thompson PM, Turner JA Biological psychiatry 29960671 Biol Psychiatry 2018 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/29960671
MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES. Zhang J, Tu Y, Li Q, Caselli RJ, Thompson PM, Ye J, Wang Y Proceedings. IEEE International Symposium on Biomedical Imaging 30023040 Proc IEEE Int Symp Biomed Imaging 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/30023040
Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans. Shiroishi MS, Gupta V, Bigjahan B, Cen SY, Rashid F, Hwang DH, Lerner A, Boyko OB, Liu CJ, Law M, Thompson PM, Jahanshad N Proceedings of SPIE--the International Society for Optical Engineering 30034079 Proc SPIE Int Soc Opt Eng 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/30034079
Maturation of the Human Cerebral Cortex During Adolescence: Myelin or Dendritic Arbor? Patel Y, Shin J, Gowland PA, Pausova Z, Paus T, IMAGEN consortium Cerebral cortex (New York, N.Y. : 1991) 30169567 Cereb Cortex 2019 Jul 22 https://www.ncbi.nlm.nih.gov/pubmed/30169567
Methylation of OPRL1 mediates the effect of psychosocial stress on binge drinking in adolescents. Ruggeri B, Macare C, Stopponi S, Jia T, Carvalho FM, Robert G, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Cattrell A, Conrod PJ, Desrivières S, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Papadopoulos-Orfanos D, Paus T, Poustka L, Smolka MN, Vetter NC, Walter H, Whelan R, Sommer WH, Bakalkin G, Ciccocioppo R, Schumann G, IMAGEN consortium Journal of child psychology and psychiatry, and allied disciplines 29197086 J Child Psychol Psychiatry 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/29197086
MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS. Dennis EL, Rashid F, Faskowitz J, Jin Y, McMahon KL, de Zubicaray GI, Martin NG, Hickie IB, Wright MJ, Jahanshad N, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 29201279 Proc IEEE Int Symp Biomed Imaging 2017 https://www.ncbi.nlm.nih.gov/pubmed/29201279
Multi-modal Registration Improves Group Discrimination in Pediatric Traumatic Brain Injury. Dennis EL, Rashid F, Villalon-Reina J, Prasad G, Faskowitz J, Babikian T, Mink R, Babbitt C, Johnson J, Giza CC, Asarnow RF, Thompson PM Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) 29147687 Brainlesion 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/29147687
Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline. Adhikari BM, Jahanshad N, Shukla D, Glahn DC, Blangero J, Reynolds RC, Cox RW, Fieremans E, Veraart J, Novikov DS, Nichols TE, Hong LE, Thompson PM, Kochunov P Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 29218892 Pac Symp Biocomput 2018 https://www.ncbi.nlm.nih.gov/pubmed/29218892
Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex. Guadalupe T, Mathias SR, vanErp TGM, Whelan CD, Zwiers MP, Abe Y, Abramovic L, Agartz I, Andreassen OA, Arias-Vásquez A, Aribisala BS, Armstrong NJ, Arolt V, Artiges E, Ayesa-Arriola R, Baboyan VG, Banaschewski T, Barker G, Bastin ME, Baune BT, Blangero J, Bokde ALW, Boedhoe PSW, Bose A, Brem S, Brodaty H, Bromberg U, Brooks S, Büchel C, Buitelaar J, Calhoun VD, Cannon DM, Cattrell A, Cheng Y, Conrod PJ, Conzelmann A, Corvin A, Crespo-Facorro B, Crivello F, Dannlowski U, de Zubicaray GI, de Zwarte SMC, Deary IJ, Desrivières S, Doan NT, Donohoe G, Dørum ES, Ehrlich S, Espeseth T, Fernández G, Flor H, Fouche JP, Frouin V, Fukunaga M, Gallinat J, Garavan H, Gill M, Suarez AG, Gowland P, Grabe HJ, Grotegerd D, Gruber O, Hagenaars S, Hashimoto R, Hauser TU, Heinz A, Hibar DP, Hoekstra PJ, Hoogman M, Howells FM, Hu H, Hulshoff Pol HE, Huyser C, Ittermann B, Jahanshad N, Jönsson EG, Jurk S, Kahn RS, Kelly S, Kraemer B, Kugel H, Kwon JS, Lemaitre H, Lesch KP, Lochner C, Luciano M, Marquand AF, Martin NG, Martínez-Zalacaín I, Martinot JL, Mataix-Cols D, Mather K, McDonald C, McMahon KL, Medland SE, Menchón JM, Morris DW, Mothersill O, Maniega SM, Mwangi B, Nakamae T, Nakao T, Narayanaswaamy JC, Nees F, Nordvik JE, Onnink AMH, Opel N, Ophoff R, Paillère Martinot ML, Papadopoulos Orfanos D, Pauli P, Paus T, Poustka L, Reddy JY, Renteria ME, Roiz-Santiáñez R, Roos A, Royle NA, Sachdev P, Sánchez-Juan P, Schmaal L, Schumann G, Shumskaya E, Smolka MN, Soares JC, Soriano-Mas C, Stein DJ, Strike LT, Toro R, Turner JA, Tzourio-Mazoyer N, Uhlmann A, Hernández MV, van den Heuvel OA, van der Meer D, van Haren NEM, Veltman DJ, Venkatasubramanian G, Vetter NC, Vuletic D, Walitza S, Walter H, Walton E, Wang Z, Wardlaw J, Wen W, Westlye LT, Whelan R, Wittfeld K, Wolfers T, Wright MJ, Xu J, Xu X, Yun JY, Zhao J, Franke B, Thompson PM, Glahn DC, Mazoyer B, Fisher SE, Francks C Brain imaging and behavior 27738994 Brain Imaging Behav 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/27738994
Distinct Subcortical Volume Alterations in Pediatric and Adult OCD: A Worldwide Meta- and Mega-Analysis. Boedhoe PS, Schmaal L, Abe Y, Ameis SH, Arnold PD, Batistuzzo MC, Benedetti F, Beucke JC, Bollettini I, Bose A, Brem S, Calvo A, Cheng Y, Cho KI, Dallaspezia S, Denys D, Fitzgerald KD, Fouche JP, Giménez M, Gruner P, Hanna GL, Hibar DP, Hoexter MQ, Hu H, Huyser C, Ikari K, Jahanshad N, Kathmann N, Kaufmann C, Koch K, Kwon JS, Lazaro L, Liu Y, Lochner C, Marsh R, Martínez-Zalacaín I, Mataix-Cols D, Menchón JM, Minuzzi L, Nakamae T, Nakao T, Narayanaswamy JC, Piras F, Piras F, Pittenger C, Reddy YC, Sato JR, Simpson HB, Soreni N, Soriano-Mas C, Spalletta G, Stevens MC, Szeszko PR, Tolin DF, Venkatasubramanian G, Walitza S, Wang Z, van Wingen GA, Xu J, Xu X, Yun JY, Zhao Q, ENIGMA OCD Working Group, Thompson PM, Stein DJ, van den Heuvel OA The American journal of psychiatry 27609241 Am J Psychiatry 2017 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/27609241
Cerebral amyloid is associated with greater white-matter hyperintensity accrual in cognitively normal older adults. Scott JA, Braskie MN, Tosun D, Maillard P, Thompson PM, Weiner M, DeCarli C, Carmichael OT, ADNI Neurobiology of aging 27639120 Neurobiol Aging 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/27639120
Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications. Tao C, Nichols TE, Hua X, Ching CRK, Rolls ET, Thompson PM, Feng J, Alzheimer's Disease Neuroimaging Initiative NeuroImage 27666385 Neuroimage 2017 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/27666385
Quantitative magnetic resonance imaging traits as endophenotypes for genetic mapping in epilepsy. Alhusaini S, Whelan CD, Sisodiya SM, Thompson PM NeuroImage. Clinical 27672556 Neuroimage Clin 2016 https://www.ncbi.nlm.nih.gov/pubmed/27672556
The C677T variant in MTHFR modulates associations between blood-based and cerebrospinal fluid biomarkers of neurodegeneration. Roussotte FF, Narr KL, Small GW, Thompson PM, Alzheimer’s Disease Neuroimaging Initiative Neuroreport 27380243 Neuroreport 2016 Aug 17 https://www.ncbi.nlm.nih.gov/pubmed/27380243
Interplay between stress response genes associated with attention-deficit hyperactivity disorder and brain volume. van der Meer D, Hoekstra PJ, Bralten J, van Donkelaar M, Heslenfeld DJ, Oosterlaan J, Faraone SV, Franke B, Buitelaar JK, Hartman CA Genes, brain, and behavior 27391809 Genes Brain Behav 2016 Sep https://www.ncbi.nlm.nih.gov/pubmed/27391809
Integrated analysis of gray and white matter alterations in attention-deficit/hyperactivity disorder. Francx W, Llera A, Mennes M, Zwiers MP, Faraone SV, Oosterlaan J, Heslenfeld D, Hoekstra PJ, Hartman CA, Franke B, Buitelaar JK, Beckmann CF NeuroImage. Clinical 27298764 Neuroimage Clin 2016 https://www.ncbi.nlm.nih.gov/pubmed/27298764
MORPHOMETRIC ANALYSIS OF HIPPOCAMPUS AND LATERAL VENTRICLE REVEALS REGIONAL DIFFERENCE BETWEEN COGNITIVELY STABLE AND DECLINING PERSONS. Zhang W, Shi J, Stonnington C, Bauer RJ 3rd, Gutman BA, Chen K, Thompson PM, Reiman EM, Caselli RJ, Wang Y Proceedings. IEEE International Symposium on Biomedical Imaging 27499828 Proc IEEE Int Symp Biomed Imaging 2016 Apr https://www.ncbi.nlm.nih.gov/pubmed/27499828
APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE. Zhang J, Stonnington C, Li Q, Shi J, Bauer RJ 3rd, Gutman BA, Chen K, Reiman EM, Thompson PM, Ye J, Wang Y Proceedings. IEEE International Symposium on Biomedical Imaging 27499829 Proc IEEE Int Symp Biomed Imaging 2016 Apr https://www.ncbi.nlm.nih.gov/pubmed/27499829
Blockwise Human Brain Network Visual Comparison Using NodeTrix Representation. Yang X, Shi L, Daianu M, Tong H, Liu Q, Thompson P IEEE transactions on visualization and computer graphics 27514058 IEEE Trans Vis Comput Graph 2017 Jan https://www.ncbi.nlm.nih.gov/pubmed/27514058
Heritability of the shape of subcortical brain structures in the general population. Roshchupkin GV, Gutman BA, Vernooij MW, Jahanshad N, Martin NG, Hofman A, McMahon KL, van der Lee SJ, van Duijn CM, de Zubicaray GI, Uitterlinden AG, Wright MJ, Niessen WJ, Thompson PM, Ikram MA, Adams HHH Nature communications 27976715 Nat Commun 2016 Dec 15 https://www.ncbi.nlm.nih.gov/pubmed/27976715
Relationship of a common OXTR gene variant to brain structure and default mode network function in healthy humans. Wang J, Braskie MN, Hafzalla GW, Faskowitz J, McMahon KL, de Zubicaray GI, Wright MJ, Yu C, Thompson PM NeuroImage 28017919 Neuroimage 2017 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/28017919
Simultaneous Modeling of Disease Status and Clinical Phenotypes To Increase Power in Genome-Wide Association Studies. Bilow M, Crespo F, Pan Z, Eskin E, Eyheramendy S Genetics 28132020 Genetics 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/28132020
Subcortical brain volume differences in participants with attention deficit hyperactivity disorder in children and adults: a cross-sectional mega-analysis. Hoogman M, Bralten J, Hibar DP, Mennes M, Zwiers MP, Schweren LSJ, van Hulzen KJE, Medland SE, Shumskaya E, Jahanshad N, Zeeuw P, Szekely E, Sudre G, Wolfers T, Onnink AMH, Dammers JT, Mostert JC, Vives-Gilabert Y, Kohls G, Oberwelland E, Seitz J, Schulte-Rüther M, Ambrosino S, Doyle AE, Høvik MF, Dramsdahl M, Tamm L, van Erp TGM, Dale A, Schork A, Conzelmann A, Zierhut K, Baur R, McCarthy H, Yoncheva YN, Cubillo A, Chantiluke K, Mehta MA, Paloyelis Y, Hohmann S, Baumeister S, Bramati I, Mattos P, Tovar-Moll F, Douglas P, Banaschewski T, Brandeis D, Kuntsi J, Asherson P, Rubia K, Kelly C, Martino AD, Milham MP, Castellanos FX, Frodl T, Zentis M, Lesch KP, Reif A, Pauli P, Jernigan TL, Haavik J, Plessen KJ, Lundervold AJ, Hugdahl K, Seidman LJ, Biederman J, Rommelse N, Heslenfeld DJ, Hartman CA, Hoekstra PJ, Oosterlaan J, Polier GV, Konrad K, Vilarroya O, Ramos-Quiroga JA, Soliva JC, Durston S, Buitelaar JK, Faraone SV, Shaw P, Thompson PM, Franke B The lancet. Psychiatry 28219628 Lancet Psychiatry 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/28219628
Independent value added by diffusion MRI for prediction of cognitive function in older adults. Scott JA, Tosun D, Braskie MN, Maillard P, Thompson PM, Weiner M, DeCarli C, Carmichael OT, ADNI NeuroImage. Clinical 28180075 Neuroimage Clin 2017 https://www.ncbi.nlm.nih.gov/pubmed/28180075
Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation. Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E Nature methods 28245214 Nat Methods 2017 Feb 28 https://www.ncbi.nlm.nih.gov/pubmed/28245214
Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group. BRAINS (Brain Imaging in Normal Subjects) Expert Working Group, Shenkin SD, Pernet C, Nichols TE, Poline JB, Matthews PM, van der Lugt A, Mackay C, Lanyon L, Mazoyer B, Boardman JP, Thompson PM, Fox N, Marcus DS, Sheikh A, Cox SR, Anblagan D, Job DE, Dickie DA, Rodriguez D, Wardlaw JM NeuroImage 28232121 Neuroimage 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28232121
Psychosocial Stress and Brain Function in Adolescent Psychopathology. Quinlan EB, Cattrell A, Jia T, Artiges E, Banaschewski T, Barker G, Bokde ALW, Bromberg U, Büchel C, Brühl R, Conrod PJ, Desrivieres S, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Martinot JL, Paillère Martinot ML, Nees F, Papadopoulos-Orfanos D, Paus T, Poustka L, Smolka MN, Vetter NC, Walter H, Whelan R, Glennon JC, Buitelaar JK, Happé F, Loth E, Barker ED, Schumann G, IMAGEN Consortium The American journal of psychiatry 28618856 Am J Psychiatry 2017 Aug 1 https://www.ncbi.nlm.nih.gov/pubmed/28618856
Positive symptoms associate with cortical thinning in the superior temporal gyrus via the ENIGMA Schizophrenia consortium. Walton E, Hibar DP, van Erp TG, Potkin SG, Roiz-Santiañez R, Crespo-Facorro B, Suarez-Pinilla P, Van Haren NE, de Zwarte SM, Kahn RS, Cahn W, Doan NT, Jørgensen KN, Gurholt TP, Agartz I, Andreassen OA, Westlye LT, Melle I, Berg AO, Mørch-Johnsen L, Faerden A, Flyckt L, Fatouros-Bergman H, Karolinska Schizophrenia Project Consortium (KaSP), Jönsson EG, Hashimoto R, Yamamori H, Fukunaga M, Preda A, De Rossi P, Piras F, Banaj N, Ciullo V, Spalletta G, Gur RE, Gur RC, Wolf DH, Satterthwaite TD, Beard LM, Sommer IE, Koops S, Gruber O, Richter A, Krämer B, Kelly S, Donohoe G, McDonald C, Cannon DM, Corvin A, Gill M, Di Giorgio A, Bertolino A, Lawrie S, Nickson T, Whalley HC, Neilson E, Calhoun VD, Thompson PM, Turner JA, Ehrlich S Acta psychiatrica Scandinavica 28369804 Acta Psychiatr Scand 2017 May https://www.ncbi.nlm.nih.gov/pubmed/28369804
Genome-wide association analysis identifies common variants influencing infant brain volumes. Xia K, Zhang J, Ahn M, Jha S, Crowley JJ, Szatkiewicz J, Li T, Zou F, Zhu H, Hibar D, Thompson P, ENIGMA Consortium, Sullivan PF, Styner M, Gilmore JH, Knickmeyer RC Translational psychiatry 28763065 Transl Psychiatry 2017 Aug 1 https://www.ncbi.nlm.nih.gov/pubmed/28763065
Anxiety modulates the relation between attention-deficit/hyperactivity disorder severity and working memory-related brain activity. van der Meer D, Hoekstra PJ, van Rooij D, Winkler AM, van Ewijk H, Heslenfeld DJ, Oosterlaan J, Faraone SV, Franke B, Buitelaar JK, Hartman CA The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry 28635543 World J Biol Psychiatry 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/28635543
Hyperbolic Wasserstein Distance for Shape Indexing. Shi J, Wang Y IEEE transactions on pattern analysis and machine intelligence 30763239 IEEE Trans Pattern Anal Mach Intell 2020 Jun https://www.ncbi.nlm.nih.gov/pubmed/30763239
Progressive brain atrophy in chronically infected and treated HIV+ individuals. Nir TM, Jahanshad N, Ching CRK, Cohen RA, Harezlak J, Schifitto G, Lam HY, Hua X, Zhong J, Zhu T, Taylor MJ, Campbell TB, Daar ES, Singer EJ, Alger JR, Thompson PM, Navia BA, HIV Neuroimaging Consortium Journal of neurovirology 30767174 J Neurovirol 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/30767174
Concordance of genetic variation that increases risk for anxiety disorders and posttraumatic stress disorders and that influences their underlying neurocircuitry. van der Merwe C, Jahanshad N, Cheung JW, Mufford M, Groenewold NA, Koen N, Ramesar R, Dalvie S, ENIGMA Consortium PGC-PTSD, Knowles JA, Hibar DP, Nievergelt CM, Koenen KC, Liberzon I, Ressler KJ, Medland SE, Morey RA, Thompson PM, Stein DJ Journal of affective disorders 30699873 J Affect Disord 2019 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/30699873
Brain Imaging of the Cortex in ADHD: A Coordinated Analysis of Large-Scale Clinical and Population-Based Samples. Hoogman M, Muetzel R, Guimaraes JP, Shumskaya E, Mennes M, Zwiers MP, Jahanshad N, Sudre G, Wolfers T, Earl EA, Soliva Vila JC, Vives-Gilabert Y, Khadka S, Novotny SE, Hartman CA, Heslenfeld DJ, Schweren LJS, Ambrosino S, Oranje B, de Zeeuw P, Chaim-Avancini TM, Rosa PGP, Zanetti MV, Malpas CB, Kohls G, von Polier GG, Seitz J, Biederman J, Doyle AE, Dale AM, van Erp TGM, Epstein JN, Jernigan TL, Baur-Streubel R, Ziegler GC, Zierhut KC, Schrantee A, Høvik MF, Lundervold AJ, Kelly C, McCarthy H, Skokauskas N, O'Gorman Tuura RL, Calvo A, Lera-Miguel S, Nicolau R, Chantiluke KC, Christakou A, Vance A, Cercignani M, Gabel MC, Asherson P, Baumeister S, Brandeis D, Hohmann S, Bramati IE, Tovar-Moll F, Fallgatter AJ, Kardatzki B, Schwarz L, Anikin A, Baranov A, Gogberashvili T, Kapilushniy D, Solovieva A, El Marroun H, White T, Karkashadze G, Namazova-Baranova L, Ethofer T, Mattos P, Banaschewski T, Coghill D, Plessen KJ, Kuntsi J, Mehta MA, Paloyelis Y, Harrison NA, Bellgrove MA, Silk TJ, Cubillo AI, Rubia K, Lazaro L, Brem S, Walitza S, Frodl T, Zentis M, Castellanos FX, Yoncheva YN, Haavik J, Reneman L, Conzelmann A, Lesch KP, Pauli P, Reif A, Tamm L, Konrad K, Oberwelland Weiss E, Busatto GF, Louza MR, Durston S, Hoekstra PJ, Oosterlaan J, Stevens MC, Ramos-Quiroga JA, Vilarroya O, Fair DA, Nigg JT, Thompson PM, Buitelaar JK, Faraone SV, Shaw P, Tiemeier H, Bralten J, Franke B The American journal of psychiatry 31014101 Am J Psychiatry 2019 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/31014101
Amygdalar reactivity is associated with prefrontal cortical thickness in a large population-based sample of adolescents. Albaugh MD, Hudziak JJ, Orr C, Spechler PA, Chaarani B, Mackey S, Lepage C, Fonov V, Rioux P, Evans AC, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Potter AS, Garavan H, IMAGEN Consortium PloS one 31048888 PLoS One 2019 https://www.ncbi.nlm.nih.gov/pubmed/31048888
Low Smoking Exposure, the Adolescent Brain, and the Modulating Role of CHRNA5 Polymorphisms. Chaarani B, Kan KJ, Mackey S, Spechler PA, Potter A, Orr C, D'Alberto N, Hudson KE, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Cattrell A, Conrod PJ, Desrivières S, Flor H, Frouin V, Gallinat J, Gowland P, Heinz A, Ittermann B, Martinot JL, Nees F, Papadopoulos-Orfanos D, Paus T, Poustka L, Smolka MN, Walter H, Whelan R, Higgins ST, Schumann G, Althoff RR, Stein EA, Garavan H, IMAGEN Consortium Biological psychiatry. Cognitive neuroscience and neuroimaging 31072760 Biol Psychiatry Cogn Neurosci Neuroimaging 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/31072760
A concise and persistent feature to study brain resting-state network dynamics: Findings from the Alzheimer's Disease Neuroimaging Initiative. Kuang L, Han X, Chen K, Caselli RJ, Reiman EM, Wang Y, Alzheimer's Disease Neuroimaging Initiative Human brain mapping 30569583 Hum Brain Mapp 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/30569583
Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. Schleifer C, Lin A, Kushan L, Ji JL, Yang G, Bearden CE, Anticevic A The Journal of neuroscience : the official journal of the Society for Neuroscience 30478034 J Neurosci 2019 Feb 13 https://www.ncbi.nlm.nih.gov/pubmed/30478034
Allele-Specific Methylation of SPDEF: A Novel Moderator of Psychosocial Stress and Substance Abuse. Tay N, Macare C, Liu Y, Ruggeri B, Jia T, Chu C, Biondo F, Ing A, Luo Q, Sarkysian D, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Frieling H, Bleich S, Barker ED, Syvänen AC, Rüegg J, Ekström TJ, Bakalkin G, Schumann G, IMAGEN Consortium The American journal of psychiatry 30525907 Am J Psychiatry 2019 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/30525907
Neural Correlates of Failed Inhibitory Control as an Early Marker of Disordered Eating in Adolescents. Bartholdy S, O'Daly OG, Campbell IC, Banaschewski T, Barker G, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Schmidt U, IMAGEN Consortium Biological psychiatry 31122340 Biol Psychiatry 2019 Jun 1 https://www.ncbi.nlm.nih.gov/pubmed/31122340
Multi-Site Meta-Analysis of Morphometry. Jahanshad N, Faskowitz J, Roshchupkin G, Hibar DP, Gutman BA, Tustison NJ, Adams HHH, Niessen WJ, Vernooij MW, Ikram MA, Zwiers MP, Vasquez AA, Franke B, Kroll JL, Mwangi B, Soares JC, Ing A, Desrivieres S, Schumann G, Hansell NK, de Zubicaray GI, McMahon KL, Martin NG, Wright MJ, Thompson PM IEEE/ACM transactions on computational biology and bioinformatics 31135366 IEEE/ACM Trans Comput Biol Bioinform 2019 Sep-Oct https://www.ncbi.nlm.nih.gov/pubmed/31135366
Decreased brain connectivity in smoking contrasts with increased connectivity in drinking. Cheng W, Rolls ET, Robbins TW, Gong W, Liu Z, Lv W, Du J, Wen H, Ma L, Quinlan EB, Garavan H, Artiges E, Papadopoulos Orfanos D, Smolka MN, Schumann G, Kendrick K, Feng J eLife 30616717 Elife 2019 Jan 8 https://www.ncbi.nlm.nih.gov/pubmed/30616717
Rich club network analysis shows distinct patterns of disruption in frontotemporal dementia and Alzheimer's disease. Daianu M, Jahanshad N, Villalon-Reina JE, Mendez MF, Bartzokis G, Jimenez EE, Karve SJ, Barsuglia J, Thompson PM Mathematics and visualization 26161050 Math Vis 2014 https://www.ncbi.nlm.nih.gov/pubmed/26161050
Accurate and fast multiple-testing correction in eQTL studies. Sul JH, Raj T, de Jong S, de Bakker PI, Raychaudhuri S, Ophoff RA, Stranger BE, Eskin E, Han B American journal of human genetics 26027500 Am J Hum Genet 2015 Jun 4 https://www.ncbi.nlm.nih.gov/pubmed/26027500
Rsu1 regulates ethanol consumption in Drosophila and humans. Ojelade SA, Jia T, Rodan AR, Chenyang T, Kadrmas JL, Cattrell A, Ruggeri B, Charoen P, Lemaitre H, Banaschewski T, Büchel C, Bokde AL, Carvalho F, Conrod PJ, Flor H, Frouin V, Gallinat J, Garavan H, Gowland PA, Heinz A, Ittermann B, Lathrop M, Lubbe S, Martinot JL, Paus T, Smolka MN, Spanagel R, O'Reilly PF, Laitinen J, Veijola JM, Feng J, Desrivières S, Jarvelin MR, IMAGEN Consortium, Schumann G, Rothenfluh A Proceedings of the National Academy of Sciences of the United States of America 26170296 Proc Natl Acad Sci U S A 2015 Jul 28 https://www.ncbi.nlm.nih.gov/pubmed/26170296
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Subcortical shape and volume abnormalities in an elderly HIV+ cohort. Wade BS, Valcour V, Busovaca E, Esmaeili-Firidouni P, Joshi SH, Wang Y, Thompson PM Proceedings of SPIE--the International Society for Optical Engineering 25844123 Proc SPIE Int Soc Opt Eng 2015 Mar 17 https://www.ncbi.nlm.nih.gov/pubmed/25844123
White matter disruption in moderate/severe pediatric traumatic brain injury: advanced tract-based analyses. Dennis EL, Jin Y, Villalon-Reina JE, Zhan L, Kernan CL, Babikian T, Mink RB, Babbitt CJ, Johnson JL, Giza CC, Thompson PM, Asarnow RF NeuroImage. Clinical 25737958 Neuroimage Clin 2015 https://www.ncbi.nlm.nih.gov/pubmed/25737958
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Influence of APOE Genotype on Hippocampal Atrophy over Time - An N=1925 Surface-Based ADNI Study. Li B, Shi J, Gutman BA, Baxter LC, Thompson PM, Caselli RJ, Wang Y, Alzheimer’s Disease Neuroimaging Initiative PloS one 27065111 PLoS One 2016 https://www.ncbi.nlm.nih.gov/pubmed/27065111
ApoE ε4 Is Associated With Cognition, Brain Integrity, and Atrophy in HIV Over Age 60. Wendelken LA, Jahanshad N, Rosen HJ, Busovaca E, Allen I, Coppola G, Adams C, Rankin KP, Milanini B, Clifford K, Wojta K, Nir TM, Gutman BA, Thompson PM, Valcour V Journal of acquired immune deficiency syndromes (1999) 27228100 J Acquir Immune Defic Syndr 2016 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/27228100
Brain structural changes following adaptive cognitive training assessed by Tensor-Based Morphometry (TBM). Colom R, Hua X, Martínez K, Burgaleta M, Román FJ, Gunter JL, Carmona S, Jaeggi SM, Thompson PM Neuropsychologia 27477628 Neuropsychologia 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/27477628
Heritability and genetic correlation between the cerebral cortex and associated white matter connections. Shen KK, Doré V, Rose S, Fripp J, McMahon KL, de Zubicaray GI, Martin NG, Thompson PM, Wright MJ, Salvado O Human brain mapping 27006297 Hum Brain Mapp 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/27006297
Linked patterns of biological and environmental covariation with brain structure in adolescence: a population-based longitudinal study. Modabbernia A, Reichenberg A, Ing A, Moser DA, Doucet GE, Artiges E, Banaschewski T, Barker GJ, Becker A, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Fröhner JH, Garavan H, Gowland P, Grigis A, Grimmer Y, Heinz A, Insensee C, Ittermann B, Martinot JL, Martinot MP, Millenet S, Nees F, Orfanos DP, Paus T, Penttilä J, Poustka L, Smolka MN, Stringaris A, van Noort BM, Walter H, Whelan R, Schumann G, Frangou S, IMAGEN Consortium Molecular psychiatry 32444868 Mol Psychiatry 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/32444868
White matter abnormalities across different epilepsy syndromes in adults: an ENIGMA-Epilepsy study. Hatton SN, Huynh KH, Bonilha L, Abela E, Alhusaini S, Altmann A, Alvim MKM, Balachandra AR, Bartolini E, Bender B, Bernasconi N, Bernasconi A, Bernhardt B, Bargallo N, Caldairou B, Caligiuri ME, Carr SJA, Cavalleri GL, Cendes F, Concha L, Davoodi-Bojd E, Desmond PM, Devinsky O, Doherty CP, Domin M, Duncan JS, Focke NK, Foley SF, Gambardella A, Gleichgerrcht E, Guerrini R, Hamandi K, Ishikawa A, Keller SS, Kochunov PV, Kotikalapudi R, Kreilkamp BAK, Kwan P, Labate A, Langner S, Lenge M, Liu M, Lui E, Martin P, Mascalchi M, Moreira JCV, Morita-Sherman ME, O'Brien TJ, Pardoe HR, Pariente JC, Ribeiro LF, Richardson MP, Rocha CS, Rodríguez-Cruces R, Rosenow F, Severino M, Sinclair B, Soltanian-Zadeh H, Striano P, Taylor PN, Thomas RH, Tortora D, Velakoulis D, Vezzani A, Vivash L, von Podewils F, Vos SB, Weber B, Winston GP, Yasuda CL, Zhu AH, Thompson PM, Whelan CD, Jahanshad N, Sisodiya SM, McDonald CR Brain : a journal of neurology 32814957 Brain 2020 Aug 1 https://www.ncbi.nlm.nih.gov/pubmed/32814957
Ethical issues in global neuroimaging genetics collaborations. Palk A, Illes J, Thompson PM, Stein DJ NeuroImage 32736000 Neuroimage 2020 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/32736000
Mapping brain asymmetry in health and disease through the ENIGMA consortium. Kong XZ, Postema MC, Guadalupe T, de Kovel C, Boedhoe PSW, Hoogman M, Mathias SR, van Rooij D, Schijven D, Glahn DC, Medland SE, Jahanshad N, Thomopoulos SI, Turner JA, Buitelaar J, van Erp TGM, Franke B, Fisher SE, van den Heuvel OA, Schmaal L, Thompson PM, Francks C Human brain mapping 32420672 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32420672
Applying surface-based morphometry to study ventricular abnormalities of cognitively unimpaired subjects prior to clinically significant memory decline. Dong Q, Zhang W, Stonnington CM, Wu J, Gutman BA, Chen K, Su Y, Baxter LC, Thompson PM, Reiman EM, Caselli RJ, Wang Y NeuroImage. Clinical 32683323 Neuroimage Clin 2020 https://www.ncbi.nlm.nih.gov/pubmed/32683323
Region-specific sex differences in the hippocampus. van Eijk L, Hansell NK, Strike LT, Couvy-Duchesne B, de Zubicaray GI, Thompson PM, McMahon KL, Zietsch BP, Wright MJ NeuroImage 32278894 Neuroimage 2020 Jul 15 https://www.ncbi.nlm.nih.gov/pubmed/32278894
FKBP5 haplotypes and PTSD modulate the resting-state brain activity in Han Chinese adults who lost their only child. Qi R, Luo Y, Zhang L, Weng Y, Surento W, Jahanshad N, Xu Q, Yin Y, Li L, Cao Z, Thompson PM, Lu GM Translational psychiatry 32170058 Transl Psychiatry 2020 Mar 13 https://www.ncbi.nlm.nih.gov/pubmed/32170058
Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics. Jin Y, Shi Y, Zhan L, Gutman BA, de Zubicaray GI, McMahon KL, Wright MJ, Toga AW, Thompson PM NeuroImage 24821529 Neuroimage 2014 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/24821529
Genetic architecture of subcortical brain regions: common and region-specific genetic contributions. Rentería ME, Hansell NK, Strike LT, McMahon KL, de Zubicaray GI, Hickie IB, Thompson PM, Martin NG, Medland SE, Wright MJ Genes, brain, and behavior 25199620 Genes Brain Behav 2014 Nov https://www.ncbi.nlm.nih.gov/pubmed/25199620
A Transformation Similarity Constraint for Groupwise Nonlinear Registration in Longitudinal Neuro Imaging Studies. Fleishman GM, Gutman BA, Fletcher PT, Thompson P Proceedings of SPIE--the International Society for Optical Engineering 25914796 Proc SPIE Int Soc Opt Eng 2015 Mar 20 https://www.ncbi.nlm.nih.gov/pubmed/25914796
Striatal activity and reduced white matter increase frontal activity in youths with family histories of alcohol and other substance-use disorders performing a go/no-go task. Acheson A, Tagamets MA, Winkler A, Rowland LM, Mathias CW, Wright SN, Hong LE, Kochunov P, Dougherty DM Brain and behavior 26221573 Brain Behav 2015 Jul https://www.ncbi.nlm.nih.gov/pubmed/26221573
A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes. Gutman BA, Fletcher PT, Cardoso MJ, Fleishman GM, Lorenzi M, Thompson PM, Ourselin S Information processing in medical imaging : proceedings of the ... conference 26221675 Inf Process Med Imaging 2015 https://www.ncbi.nlm.nih.gov/pubmed/26221675
Rich club analysis in the Alzheimer's disease connectome reveals a relatively undisturbed structural core network. Daianu M, Jahanshad N, Nir TM, Jack CR Jr, Weiner MW, Bernstein MA, Thompson PM, Alzheimer's Disease Neuroimaging Initiative Human brain mapping 26037224 Hum Brain Mapp 2015 Aug https://www.ncbi.nlm.nih.gov/pubmed/26037224
ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide. Thompson PM, Andreassen OA, Arias-Vasquez A, Bearden CE, Boedhoe PS, Brouwer RM, Buckner RL, Buitelaar JK, Bulayeva KB, Cannon DM, Cohen RA, Conrod PJ, Dale AM, Deary IJ, Dennis EL, de Reus MA, Desrivieres S, Dima D, Donohoe G, Fisher SE, Fouche JP, Francks C, Frangou S, Franke B, Ganjgahi H, Garavan H, Glahn DC, Grabe HJ, Guadalupe T, Gutman BA, Hashimoto R, Hibar DP, Holland D, Hoogman M, Hulshoff Pol HE, Hosten N, Jahanshad N, Kelly S, Kochunov P, Kremen WS, Lee PH, Mackey S, Martin NG, Mazoyer B, McDonald C, Medland SE, Morey RA, Nichols TE, Paus T, Pausova Z, Schmaal L, Schumann G, Shen L, Sisodiya SM, Smit DJA, Smoller JW, Stein DJ, Stein JL, Toro R, Turner JA, van den Heuvel MP, van den Heuvel OL, van Erp TGM, van Rooij D, Veltman DJ, Walter H, Wang Y, Wardlaw JM, Whelan CD, Wright MJ, Ye J, ENIGMA Consortium NeuroImage 26658930 Neuroimage 2017 Jan 15 https://www.ncbi.nlm.nih.gov/pubmed/26658930
Disrupted rich club network in behavioral variant frontotemporal dementia and early-onset Alzheimer's disease. Daianu M, Mezher A, Mendez MF, Jahanshad N, Jimenez EE, Thompson PM Human brain mapping 26678225 Hum Brain Mapp 2016 Mar https://www.ncbi.nlm.nih.gov/pubmed/26678225
Voxel-based morphometry analysis reveals frontal brain differences in participants with ADHD and their unaffected siblings. Bralten J, Greven CU, Franke B, Mennes M, Zwiers MP, Rommelse NN, Hartman C, van der Meer D, O'Dwyer L, Oosterlaan J, Hoekstra PJ, Heslenfeld D, Arias-Vasquez A, Buitelaar JK Journal of psychiatry & neuroscience : JPN 26679925 J Psychiatry Neurosci 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/26679925
Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways. Horgusluoglu-Moloch E, Risacher SL, Crane PK, Hibar D, Thompson PM, Saykin AJ, Nho K, Alzheimer’s Disease Neuroimaging Initiative (ADNI) Scientific reports 31601890 Sci Rep 2019 Oct 10 https://www.ncbi.nlm.nih.gov/pubmed/31601890
The Association Between Familial Risk and Brain Abnormalities Is Disease Specific: An ENIGMA-Relatives Study of Schizophrenia and Bipolar Disorder. de Zwarte SMC, Brouwer RM, Agartz I, Alda M, Aleman A, Alpert KI, Bearden CE, Bertolino A, Bois C, Bonvino A, Bramon E, Buimer EEL, Cahn W, Cannon DM, Cannon TD, Caseras X, Castro-Fornieles J, Chen Q, Chung Y, De la Serna E, Di Giorgio A, Doucet GE, Eker MC, Erk S, Fears SC, Foley SF, Frangou S, Frankland A, Fullerton JM, Glahn DC, Goghari VM, Goldman AL, Gonul AS, Gruber O, de Haan L, Hajek T, Hawkins EL, Heinz A, Hillegers MHJ, Hulshoff Pol HE, Hultman CM, Ingvar M, Johansson V, Jönsson EG, Kane F, Kempton MJ, Koenis MMG, Kopecek M, Krabbendam L, Krämer B, Lawrie SM, Lenroot RK, Marcelis M, Marsman JC, Mattay VS, McDonald C, Meyer-Lindenberg A, Michielse S, Mitchell PB, Moreno D, Murray RM, Mwangi B, Najt P, Neilson E, Newport J, van Os J, Overs B, Ozerdem A, Picchioni MM, Richter A, Roberts G, Aydogan AS, Schofield PR, Simsek F, Soares JC, Sugranyes G, Toulopoulou T, Tronchin G, Walter H, Wang L, Weinberger DR, Whalley HC, Yalin N, Andreassen OA, Ching CRK, van Erp TGM, Turner JA, Jahanshad N, Thompson PM, Kahn RS, van Haren NEM Biological psychiatry 31443932 Biol Psychiatry 2019 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/31443932
No Alterations of Brain Structural Asymmetry in Major Depressive Disorder: An ENIGMA Consortium Analysis. de Kovel CGF, Aftanas L, Aleman A, Alexander-Bloch AF, Baune BT, Brack I, Bülow R, Busatto Filho G, Carballedo A, Connolly CG, Cullen KR, Dannlowski U, Davey CG, Dima D, Dohm K, Erwin-Grabner T, Frodl T, Fu CHY, Hall GB, Glahn DC, Godlewska B, Gotlib IH, Goya-Maldonado R, Grabe HJ, Groenewold NA, Grotegerd D, Gruber O, Harris MA, Harrison BJ, Hatton SN, Hickie IB, Ho TC, Jahanshad N, Kircher T, Krämer B, Krug A, Lagopoulos J, Leehr EJ, Li M, MacMaster FP, MacQueen G, McIntosh AM, McLellan Q, Medland SE, Mueller BA, Nenadic I, Osipov E, Papmeyer M, Portella MJ, Reneman L, Rosa PGP, Sacchet MD, Schnell K, Schrantee A, Sim K, Simulionyte E, Sindermann L, Singh A, Stein DJ, Ubani BN, Van der Wee NJA, Van der Werff SJA, Veer IM, Vives-Gilabert Y, Völzke H, Walter H, Walter M, Schreiner MW, Whalley H, Winter N, Wittfeld K, Yang TT, Yüksel D, Zaremba D, Thompson PM, Veltman DJ, Schmaal L, Francks C The American journal of psychiatry 31352813 Am J Psychiatry 2019 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/31352813
Functional Brain Hyperactivations Are Linked to an Electrophysiological Measure of Slow Interhemispheric Transfer Time after Pediatric Moderate/Severe Traumatic Brain Injury. Olsen A, Babikian T, Dennis EL, Ellis-Blied MU, Giza C, Marion SD, Mink R, Johnson J, Babbitt CJ, Thompson PM, Asarnow RF Journal of neurotrauma 31469049 J Neurotrauma 2020 Jan 15 https://www.ncbi.nlm.nih.gov/pubmed/31469049
Altered white matter microstructural organization in posttraumatic stress disorder across 3047 adults: results from the PGC-ENIGMA PTSD consortium. Dennis EL, Disner SG, Fani N, Salminen LE, Logue M, Clarke EK, Haswell CC, Averill CL, Baugh LA, Bomyea J, Bruce SE, Cha J, Choi K, Davenport ND, Densmore M, du Plessis S, Forster GL, Frijling JL, Gonenc A, Gruber S, Grupe DW, Guenette JP, Hayes J, Hofmann D, Ipser J, Jovanovic T, Kelly S, Kennis M, Kinzel P, Koch SBJ, Koerte I, Koopowitz S, Korgaonkar M, Krystal J, Lebois LAM, Li G, Magnotta VA, Manthey A, May GJ, Menefee DS, Nawijn L, Nelson SM, Neufeld RWJ, Nitschke JB, O'Doherty D, Peverill M, Ressler KJ, Roos A, Sheridan MA, Sierk A, Simmons A, Simons RM, Simons JS, Stevens J, Suarez-Jimenez B, Sullivan DR, Théberge J, Tran JK, van den Heuvel L, van der Werff SJA, van Rooij SJH, van Zuiden M, Velez C, Verfaellie M, Vermeiren RRJM, Wade BSC, Wager T, Walter H, Winternitz S, Wolff J, York G, Zhu Y, Zhu X, Abdallah CG, Bryant R, Daniels JK, Davidson RJ, Fercho KA, Franz C, Geuze E, Gordon EM, Kaufman ML, Kremen WS, Lagopoulos J, Lanius RA, Lyons MJ, McCauley SR, McGlinchey R, McLaughlin KA, Milberg W, Neria Y, Olff M, Seedat S, Shenton M, Sponheim SR, Stein DJ, Stein MB, Straube T, Tate DF, van der Wee NJA, Veltman DJ, Wang L, Wilde EA, Thompson PM, Kochunov P, Jahanshad N, Morey RA Molecular psychiatry 31857689 Mol Psychiatry 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/31857689
Brain Imaging Genomics: Integrated Analysis and Machine Learning. Shen L, Thompson PM Proceedings of the IEEE. Institute of Electrical and Electronics Engineers 31902950 Proc IEEE Inst Electr Electron Eng 2020 Jan https://www.ncbi.nlm.nih.gov/pubmed/31902950
Hierarchical associations of alcohol use disorder symptoms in late adolescence with markers during early adolescence. Kühn S, Lisofsky N, Banaschewski T, Barker G, Bokde ALW, Bromberg U, Büchel C, Brühl R, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Gallinat J, IMAGEN Consortium Addictive behaviors 31622946 Addict Behav 2020 Jan https://www.ncbi.nlm.nih.gov/pubmed/31622946
Systemic Mitochondrial Oxidative Phosphorylation Protein Levels Correlate with Neuroimaging Measures in Chronically HIV-Infected Individuals. Kallianpur KJ, Walker M, Gerschenson M, Shikuma CM, Gangcuangco LMA, Kohorn L, Libutti DE, Nir TM, Jahanshad N, Thompson PM, Paul R AIDS research and human retroviruses 31617381 AIDS Res Hum Retroviruses 2020 Jan https://www.ncbi.nlm.nih.gov/pubmed/31617381
Cortical Surfaces Mediate the Relationship Between Polygenic Scores for Intelligence and General Intelligence. Lett TA, Vogel BO, Ripke S, Wackerhagen C, Erk S, Awasthi S, Trubetskoy V, Brandl EJ, Mohnke S, Veer IM, Nöthen MM, Rietschel M, Degenhardt F, Romanczuk-Seiferth N, Witt SH, Banaschewski T, Bokde ALW, Büchel C, Quinlan EB, Desrivières S, Flor H, Frouin V, Garavan H, Gowland P, Ittermann B, Martinot JL, Martinot MP, Nees F, Papadopoulos-Orfanos D, Paus T, Poustka L, Fröhner JH, Smolka MN, Whelan R, Schumann G, Tost H, Meyer-Lindenberg A, Heinz A, Walter H, IMAGEN consortium Cerebral cortex (New York, N.Y. : 1991) 31828294 Cereb Cortex 2020 Apr 14 https://www.ncbi.nlm.nih.gov/pubmed/31828294
Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. Postema MC, van Rooij D, Anagnostou E, Arango C, Auzias G, Behrmann M, Filho GB, Calderoni S, Calvo R, Daly E, Deruelle C, Di Martino A, Dinstein I, Duran FLS, Durston S, Ecker C, Ehrlich S, Fair D, Fedor J, Feng X, Fitzgerald J, Floris DL, Freitag CM, Gallagher L, Glahn DC, Gori I, Haar S, Hoekstra L, Jahanshad N, Jalbrzikowski M, Janssen J, King JA, Kong XZ, Lazaro L, Lerch JP, Luna B, Martinho MM, McGrath J, Medland SE, Muratori F, Murphy CM, Murphy DGM, O'Hearn K, Oranje B, Parellada M, Puig O, Retico A, Rosa P, Rubia K, Shook D, Taylor MJ, Tosetti M, Wallace GL, Zhou F, Thompson PM, Fisher SE, Buitelaar JK, Francks C Nature communications 31673008 Nat Commun 2019 Oct 31 https://www.ncbi.nlm.nih.gov/pubmed/31673008
Identifying biological markers for improved precision medicine in psychiatry. Quinlan EB, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Desrivières S, Flor H, Frouin V, Garavan H, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Smolka MN, Fröhner JH, Walter H, Whelan R, Schumann G, IMAGEN Consortium Molecular psychiatry 31676814 Mol Psychiatry 2020 Feb https://www.ncbi.nlm.nih.gov/pubmed/31676814
Low plasma ApoE levels are associated with smaller hippocampal size in the Alzheimer's disease neuroimaging initiative cohort. Teng E, Chow N, Hwang KS, Thompson PM, Gylys KH, Cole GM, Jack CR Jr, Shaw LM, Trojanowski JQ, Soares HD, Weiner MW, Apostolova LG, Alzheimer’s Disease Neuroimaging Initiative Dementia and geriatric cognitive disorders 25547651 Dement Geriatr Cogn Disord 2015 https://www.ncbi.nlm.nih.gov/pubmed/25547651
Altered white matter microstructure is associated with social cognition and psychotic symptoms in 22q11.2 microdeletion syndrome. Jalbrzikowski M, Villalon-Reina JE, Karlsgodt KH, Senturk D, Chow C, Thompson PM, Bearden CE Frontiers in behavioral neuroscience 25426042 Front Behav Neurosci 2014 https://www.ncbi.nlm.nih.gov/pubmed/25426042
Impact of Early and Late Visual Deprivation on the Structure of the Corpus Callosum: A Study Combining Thickness Profile with Surface Tensor-Based Morphometry. Shi J, Collignon O, Xu L, Wang G, Kang Y, Leporé F, Lao Y, Joshi AA, Leporé N, Wang Y Neuroinformatics 25649876 Neuroinformatics 2015 Jul https://www.ncbi.nlm.nih.gov/pubmed/25649876
Shared genetic factors influence amygdala volumes and risk for alcoholism. Dager AD, McKay DR, Kent JW Jr, Curran JE, Knowles E, Sprooten E, Göring HH, Dyer TD, Pearlson GD, Olvera RL, Fox PT, Lovallo WR, Duggirala R, Almasy L, Blangero J, Glahn DC Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 25079289 Neuropsychopharmacology 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/25079289
Partial volume correction in quantitative amyloid imaging. Su Y, Blazey TM, Snyder AZ, Raichle ME, Marcus DS, Ances BM, Bateman RJ, Cairns NJ, Aldea P, Cash L, Christensen JJ, Friedrichsen K, Hornbeck RC, Farrar AM, Owen CJ, Mayeux R, Brickman AM, Klunk W, Price JC, Thompson PM, Ghetti B, Saykin AJ, Sperling RA, Johnson KA, Schofield PR, Buckles V, Morris JC, Benzinger TLS, Dominantly Inherited Alzheimer Network NeuroImage 25485714 Neuroimage 2015 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/25485714
Investigating the genetics of hippocampal volume in older adults without dementia. Mather KA, Armstrong NJ, Wen W, Kwok JB, Assareh AA, Thalamuthu A, Reppermund S, Duesing K, Wright MJ, Ames D, Trollor JN, Brodaty H, Schofield PR, Sachdev PS PloS one 25625606 PLoS One 2015 https://www.ncbi.nlm.nih.gov/pubmed/25625606
Genetics of microstructure of the corpus callosum in older adults. Kanchibhotla SC, Mather KA, Thalamuthu A, Zhuang L, Schofield PR, Kwok JB, Ames D, Wright MJ, Trollor JN, Wen W, Sachdev PS PloS one 25514436 PLoS One 2014 https://www.ncbi.nlm.nih.gov/pubmed/25514436
Frontal and striatal alterations associated with psychopathic traits in adolescents. Yang Y, Narr KL, Baker LA, Joshi SH, Jahanshad N, Raine A, Thompson PM Psychiatry research 25676553 Psychiatry Res 2015 Mar 30 https://www.ncbi.nlm.nih.gov/pubmed/25676553
The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B, Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, Almasy L, Almeida J, Alpert K, Andreasen NC, Andreassen OA, Apostolova LG, Appel K, Armstrong NJ, Aribisala B, Bastin ME, Bauer M, Bearden CE, Bergmann O, Binder EB, Blangero J, Bockholt HJ, Bøen E, Bois C, Boomsma DI, Booth T, Bowman IJ, Bralten J, Brouwer RM, Brunner HG, Brohawn DG, Buckner RL, Buitelaar J, Bulayeva K, Bustillo JR, Calhoun VD, Cannon DM, Cantor RM, Carless MA, Caseras X, Cavalleri GL, Chakravarty MM, Chang KD, Ching CR, Christoforou A, Cichon S, Clark VP, Conrod P, Coppola G, Crespo-Facorro B, Curran JE, Czisch M, Deary IJ, de Geus EJ, den Braber A, Delvecchio G, Depondt C, de Haan L, de Zubicaray GI, Dima D, Dimitrova R, Djurovic S, Dong H, Donohoe G, Duggirala R, Dyer TD, Ehrlich S, Ekman CJ, Elvsåshagen T, Emsell L, Erk S, Espeseth T, Fagerness J, Fears S, Fedko I, Fernández G, Fisher SE, Foroud T, Fox PT, Francks C, Frangou S, Frey EM, Frodl T, Frouin V, Garavan H, Giddaluru S, Glahn DC, Godlewska B, Goldstein RZ, Gollub RL, Grabe HJ, Grimm O, Gruber O, Guadalupe T, Gur RE, Gur RC, Göring HH, Hagenaars S, Hajek T, Hall GB, Hall J, Hardy J, Hartman CA, Hass J, Hatton SN, Haukvik UK, Hegenscheid K, Heinz A, Hickie IB, Ho BC, Hoehn D, Hoekstra PJ, Hollinshead M, Holmes AJ, Homuth G, Hoogman M, Hong LE, Hosten N, Hottenga JJ, Hulshoff Pol HE, Hwang KS, Jack CR Jr, Jenkinson M, Johnston C, Jönsson EG, Kahn RS, Kasperaviciute D, Kelly S, Kim S, Kochunov P, Koenders L, Krämer B, Kwok JB, Lagopoulos J, Laje G, Landen M, Landman BA, Lauriello J, Lawrie SM, Lee PH, Le Hellard S, Lemaître H, Leonardo CD, Li CS, Liberg B, Liewald DC, Liu X, Lopez LM, Loth E, Lourdusamy A, Luciano M, Macciardi F, Machielsen MW, Macqueen GM, Malt UF, Mandl R, Manoach DS, Martinot JL, Matarin M, Mather KA, Mattheisen M, Mattingsdal M, Meyer-Lindenberg A, McDonald C, McIntosh AM, McMahon FJ, McMahon KL, Meisenzahl E, Melle I, Milaneschi Y, Mohnke S, Montgomery GW, Morris DW, Moses EK, Mueller BA, Muñoz Maniega S, Mühleisen TW, Müller-Myhsok B, Mwangi B, Nauck M, Nho K, Nichols TE, Nilsson LG, Nugent AC, Nyberg L, Olvera RL, Oosterlaan J, Ophoff RA, Pandolfo M, Papalampropoulou-Tsiridou M, Papmeyer M, Paus T, Pausova Z, Pearlson GD, Penninx BW, Peterson CP, Pfennig A, Phillips M, Pike GB, Poline JB, Potkin SG, Pütz B, Ramasamy A, Rasmussen J, Rietschel M, Rijpkema M, Risacher SL, Roffman JL, Roiz-Santiañez R, Romanczuk-Seiferth N, Rose EJ, Royle NA, Rujescu D, Ryten M, Sachdev PS, Salami A, Satterthwaite TD, Savitz J, Saykin AJ, Scanlon C, Schmaal L, Schnack HG, Schork AJ, Schulz SC, Schür R, Seidman L, Shen L, Shoemaker JM, Simmons A, Sisodiya SM, Smith C, Smoller JW, Soares JC, Sponheim SR, Sprooten E, Starr JM, Steen VM, Strakowski S, Strike L, Sussmann J, Sämann PG, Teumer A, Toga AW, Tordesillas-Gutierrez D, Trabzuni D, Trost S, Turner J, Van den Heuvel M, van der Wee NJ, van Eijk K, van Erp TG, van Haren NE, van 't Ent D, van Tol MJ, Valdés Hernández MC, Veltman DJ, Versace A, Völzke H, Walker R, Walter H, Wang L, Wardlaw JM, Weale ME, Weiner MW, Wen W, Westlye LT, Whalley HC, Whelan CD, White T, Winkler AM, Wittfeld K, Woldehawariat G, Wolf C, Zilles D, Zwiers MP, Thalamuthu A, Schofield PR, Freimer NB, Lawrence NS, Drevets W, Alzheimer’s Disease Neuroimaging Initiative, EPIGEN Consortium, IMAGEN Consortium, Saguenay Youth Study (SYS) Group Brain imaging and behavior 24399358 Brain Imaging Behav 2014 Jun https://www.ncbi.nlm.nih.gov/pubmed/24399358
Empowering imaging biomarkers of Alzheimer's disease. Gutman BA, Wang Y, Yanovsky I, Hua X, Toga AW, Jack CR Jr, Weiner MW, Thompson PM, Alzheimer's Disease Neuroimaging Initiative Neurobiology of aging 25260848 Neurobiol Aging 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/25260848
Cracking the brain's genetic code. Thompson PM Proceedings of the National Academy of Sciences of the United States of America 26582794 Proc Natl Acad Sci U S A 2015 Dec 15 https://www.ncbi.nlm.nih.gov/pubmed/26582794
Random Forest Classification of Depression Status Based On Subcortical Brain Morphometry Following Electroconvulsive Therapy. Wade BS, Joshi SH, Pirnia T, Leaver AM, Woods RP, Thompson PM, Espinoza R, Narr KL Proceedings. IEEE International Symposium on Biomedical Imaging 26413200 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413200
WHITE MATTER INTEGRITY IN TRAUMATIC BRAIN INJURY: EFFECTS OF PERMISSIBLE FIBER TURNING ANGLE. Dennis EL, Jin Y, Kernan C, Babikian T, Mink R, Babbitt C, Johnson J, Giza CC, Asarnow RF, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 26413206 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413206
GENETIC ANALYSIS OF STRUCTURAL BRAIN CONNECTIVITY USING DICCCOL MODELS OF DIFFUSION MRI IN 522 TWINS. Zhu D, Zhan L, Faskowitz J, Daianu M, Jahanshad N, de Zubicaray GI, McMahon KL, Martin NG, Wright MJ, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 26413210 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413210
Cognitive heterogeneity in adult attention deficit/hyperactivity disorder: A systematic analysis of neuropsychological measurements. Mostert JC, Onnink AMH, Klein M, Dammers J, Harneit A, Schulten T, van Hulzen KJE, Kan CC, Slaats-Willemse D, Buitelaar JK, Franke B, Hoogman M European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology 26336867 Eur Neuropsychopharmacol 2015 Nov https://www.ncbi.nlm.nih.gov/pubmed/26336867
Genes influence the amplitude and timing of brain hemodynamic responses. Shan ZY, Vinkhuyzen AAE, Thompson PM, McMahon KL, Blokland GAM, de Zubicaray GI, Calhoun V, Martin NG, Visscher PM, Wright MJ, Reutens DC NeuroImage 26375212 Neuroimage 2016 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/26375212
Geometric Brain Surface Network For Brain Cortical Parcellation. Zhang W, Wang Y Graph Learning in Medical Imaging : First International Workshop, GLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 17, 2019, Proceedings 33870335 Graph Learn Med Imaging (2019) 2019 https://www.ncbi.nlm.nih.gov/pubmed/33870335
Association of Immunosuppression and Viral Load With Subcortical Brain Volume in an International Sample of People Living With HIV. Nir TM, Fouche JP, Ananworanich J, Ances BM, Boban J, Brew BJ, Chaganti JR, Chang L, Ching CRK, Cysique LA, Ernst T, Faskowitz J, Gupta V, Harezlak J, Heaps-Woodruff JM, Hinkin CH, Hoare J, Joska JA, Kallianpur KJ, Kuhn T, Lam HY, Law M, Lebrun-Frénay C, Levine AJ, Mondot L, Nakamoto BK, Navia BA, Pennec X, Porges EC, Salminen LE, Shikuma CM, Surento W, Thames AD, Valcour V, Vassallo M, Woods AJ, Thompson PM, Cohen RA, Paul R, Stein DJ, Jahanshad N JAMA network open 33449093 JAMA Netw Open 2021 Jan 4 https://www.ncbi.nlm.nih.gov/pubmed/33449093
Differential predictors for alcohol use in adolescents as a function of familial risk. Tschorn M, Lorenz RC, O'Reilly PF, Reichenberg A, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Ittermann B, Martinot JL, Artiges E, Nees F, Papadopoulos Orfanos D, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Heinz A, Rapp MA, IMAGEN Consortium Translational psychiatry 33664233 Transl Psychiatry 2021 Mar 4 https://www.ncbi.nlm.nih.gov/pubmed/33664233
Similarity and stability of face network across populations and throughout adolescence and adulthood. Liao Z, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Paus T, IMAGEN consortium NeuroImage 34560271 Neuroimage 2021 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/34560271
The Human Brain Is Best Described as Being on a Female/Male Continuum: Evidence from a Neuroimaging Connectivity Study. Zhang Y, Luo Q, Huang CC, Lo CZ, Langley C, Desrivières S, Quinlan EB, Banaschewski T, Millenet S, Bokde ALW, Flor H, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Artiges E, Paillère-Martinot ML, Nees F, Orfanos DP, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Tsai SJ, Lin CP, Bullmore E, Schumann G, Sahakian BJ, Feng J, IMAGEN consortium Cerebral cortex (New York, N.Y. : 1991) 33471126 Cereb Cortex 2021 May 10 https://www.ncbi.nlm.nih.gov/pubmed/33471126
Conduct problems are associated with accelerated thinning of emotion-related cortical regions in a community-based sample of adolescents. Albaugh MD, Hudziak JJ, Spechler PA, Chaarani B, Lepage C, Jeon S, Rioux P, Evans AC, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Potter AS, Garavan H, IMAGEN Consortium Psychiatry research. Neuroimaging 36812809 Psychiatry Res Neuroimaging 2023 Apr https://www.ncbi.nlm.nih.gov/pubmed/36812809
The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area. Tilot AK, Khramtsova EA, Liang D, Grasby KL, Jahanshad N, Painter J, Colodro-Conde L, Bralten J, Hibar DP, Lind PA, Liu S, Brotman SM, Thompson PM, Medland SE, Macciardi F, Stranger BE, Davis LK, Fisher SE, Stein JL Cerebral cortex (New York, N.Y. : 1991) 33290510 Cereb Cortex 2021 Mar 5 https://www.ncbi.nlm.nih.gov/pubmed/33290510
Neuroimaging Association Scores: reliability and validity of aggregate measures of brain structural features linked to mental disorders in youth. Axelrud LK, Simioni AR, Pine DS, Winkler AM, Pan PM, Sato JR, Zugman A, Parker N, Picon F, Jackowski A, Hoexter MQ, IMAGEN Consortium, Barker G, Martinot JL, Martinot MLP, Satterthwaite T, Rohde LA, Milham M, Barker ED, Salum GA European child & adolescent psychiatry 33030612 Eur Child Adolesc Psychiatry 2021 Dec https://www.ncbi.nlm.nih.gov/pubmed/33030612
Structural neuroimaging biomarkers for obsessive-compulsive disorder in the ENIGMA-OCD consortium: medication matters. Bruin WB, Taylor L, Thomas RM, Shock JP, Zhutovsky P, Abe Y, Alonso P, Ameis SH, Anticevic A, Arnold PD, Assogna F, Benedetti F, Beucke JC, Boedhoe PSW, Bollettini I, Bose A, Brem S, Brennan BP, Buitelaar JK, Calvo R, Cheng Y, Cho KIK, Dallaspezia S, Denys D, Ely BA, Feusner JD, Fitzgerald KD, Fouche JP, Fridgeirsson EA, Gruner P, Gürsel DA, Hauser TU, Hirano Y, Hoexter MQ, Hu H, Huyser C, Ivanov I, James A, Jaspers-Fayer F, Kathmann N, Kaufmann C, Koch K, Kuno M, Kvale G, Kwon JS, Liu Y, Lochner C, Lázaro L, Marques P, Marsh R, Martínez-Zalacaín I, Mataix-Cols D, Menchón JM, Minuzzi L, Moreira PS, Morer A, Morgado P, Nakagawa A, Nakamae T, Nakao T, Narayanaswamy JC, Nurmi EL, O'Neill J, Pariente JC, Perriello C, Piacentini J, Piras F, Piras F, Reddy YCJ, Rus-Oswald OG, Sakai Y, Sato JR, Schmaal L, Shimizu E, Simpson HB, Soreni N, Soriano-Mas C, Spalletta G, Stern ER, Stevens MC, Stewart SE, Szeszko PR, Tolin DF, Venkatasubramanian G, Wang Z, Yun JY, van Rooij D, ENIGMA-OCD Working Group, Thompson PM, van den Heuvel OA, Stein DJ, van Wingen GA Translational psychiatry 33033241 Transl Psychiatry 2020 Oct 8 https://www.ncbi.nlm.nih.gov/pubmed/33033241
Altered lateralization of the cingulum in deployment-related traumatic brain injury: An ENIGMA military-relevant brain injury study. Dennis EL, Newsome MR, Lindsey HM, Adamson M, Austin TA, Disner SG, Eapen BC, Esopenko C, Franz CE, Geuze E, Haswell C, Hinds SR 2nd, Hodges CB, Irimia A, Kenney K, Koerte IK, Kremen WS, Levin HS, Morey RA, Ollinger J, Rowland JA, Scheibel RS, Shenton ME, Sullivan DR, Talbert LD, Thomopoulos SI, Troyanskaya M, Walker WC, Wang X, Ware AL, Werner JK, Williams W, Thompson PM, Tate DF, Wilde EA Human brain mapping 36583562 Hum Brain Mapp 2023 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/36583562
Brain Structure in Acutely Underweight and Partially Weight-Restored Individuals With Anorexia Nervosa: A Coordinated Analysis by the ENIGMA Eating Disorders Working Group. Walton E, Bernardoni F, Batury VL, Bahnsen K, Larivière S, Abbate-Daga G, Andres-Perpiña S, Bang L, Bischoff-Grethe A, Brooks SJ, Campbell IC, Cascino G, Castro-Fornieles J, Collantoni E, D'Agata F, Dahmen B, Danner UN, Favaro A, Feusner JD, Frank GKW, Friederich HC, Graner JL, Herpertz-Dahlmann B, Hess A, Horndasch S, Kaplan AS, Kaufmann LK, Kaye WH, Khalsa SS, LaBar KS, Lavagnino L, Lazaro L, Manara R, Miles AE, Milos GF, Monteleone AM, Monteleone P, Mwangi B, O'Daly O, Pariente J, Roesch J, Schmidt UH, Seitz J, Shott ME, Simon JJ, Smeets PAM, Tamnes CK, Tenconi E, Thomopoulos SI, van Elburg AA, Voineskos AN, von Polier GG, Wierenga CE, Zucker NL, Jahanshad N, King JA, Thompson PM, Berner LA, Ehrlich S Biological psychiatry 36031441 Biol Psychiatry 2022 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/36031441
Genomic patterns linked to gray matter alterations underlying working memory deficits in adults and adolescents with attention-deficit/hyperactivity disorder. Duan K, Chen J, Calhoun VD, Jiang W, Rootes-Murdy K, Schoenmacker G, Silva RF, Franke B, Buitelaar JK, Hoogman M, Oosterlaan J, Hoekstra PJ, Heslenfeld D, Hartman CA, Sprooten E, Arias-Vasquez A, Turner JA, Liu J Translational psychiatry 36774336 Transl Psychiatry 2023 Feb 11 https://www.ncbi.nlm.nih.gov/pubmed/36774336
FreeSurfer-based segmentation of hippocampal subfields: A review of methods and applications, with a novel quality control procedure for ENIGMA studies and other collaborative efforts. Sämann PG, Iglesias JE, Gutman B, Grotegerd D, Leenings R, Flint C, Dannlowski U, Clarke-Rubright EK, Morey RA, van Erp TGM, Whelan CD, Han LKM, van Velzen LS, Cao B, Augustinack JC, Thompson PM, Jahanshad N, Schmaal L Human brain mapping 33368865 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33368865
MicroRNA-eQTLs in the developing human neocortex link miR-4707-3p expression to brain size. Lafferty MJ, Aygün N, Patel NK, Krupa O, Liang D, Wolter JM, Geschwind DH, de la Torre-Ubieta L, Stein JL eLife 36629315 Elife 2023 Jan 11 https://www.ncbi.nlm.nih.gov/pubmed/36629315
Bridging big data in the ENIGMA consortium to combine non-equivalent cognitive measures. Kennedy E, Vadlamani S, Lindsey HM, Lei PW, Jo-Pugh M, Thompson PM, Tate DF, Hillary FG, Dennis EL, Wilde EA, ENIGMA Clinical Endpoints Working Group Scientific reports 39414844 Sci Rep 2024 Oct 16 https://www.ncbi.nlm.nih.gov/pubmed/39414844
Cerebral cortical alterations in adolescent early-onset psychosis: a surface-based morphometry mega-analysis. Nerland S, Barth C, Jørgensen KN, Wortinger LA, Castro-Fornieles J, Díaz-Caneja CM, Janssen J, Arango C, Sugranyes G, Baeza I, Piras F, Banaj N, Piras F, Elia S, Vecchio D, Lundberg M, Bohman H, Rund BR, de la Serna E, Fortea A, Tamnes CK, Westlye LT, Smelror RE, Andreou D, Jönsson EG, Kempton MJ, Si S, Kyriakopoulos M, Bearden CE, Laulette K, Pascual-Diaz S, Fett AJ, Karlsgodt KH, Krabbendam L, Kochunov P, Thomopoulos SI, Jahanshad N, James A, Frangou S, Myhre AM, Steen NE, Andreassen OA, Thompson PM, Agartz I medRxiv : the preprint server for health sciences 40492081 medRxiv 2025 May 28 https://www.ncbi.nlm.nih.gov/pubmed/40492081
Lifespan investigation of brain volumetric changes associated with substance use disorders. Shi R, Xiang S, Alnæs D, Chen D, Chen Z, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Garavan H, Gowland P, Grigis A, Heinz A, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Smolka MN, Hohmann S, Vaidya N, Walter H, Whelan R, Schumann G, Sahakian BJ, Westlye LT, Robbins TW, Lin X, Jia T, Feng J, IMAGEN Consortium medRxiv : the preprint server for health sciences 40492099 medRxiv 2025 May 28 https://www.ncbi.nlm.nih.gov/pubmed/40492099
Effects of gene dosage on cognitive ability: A function-based association study across brain and non-brain processes. Huguet G, Renne T, Poulain C, Dubuc A, Kumar K, Kazem S, Engchuan W, Shanta O, Douard E, Proulx C, Jean-Louis M, Saci Z, Mollon J, Schultz LM, Knowles EEM, Cox SR, Porteous D, Davies G, Redmond P, Harris SE, Schumann G, Dumas G, Labbe A, Pausova Z, Paus T, Scherer SW, Sebat J, Almasy L, Glahn DC, Jacquemont S Cell genomics 39667348 Cell Genom 2024 Dec 11 https://www.ncbi.nlm.nih.gov/pubmed/39667348
Predicting Antidepressant Treatment Response From Cortical Structure on MRI: A Mega-Analysis From the ENIGMA-MDD Working Group. Poirot MG, Boucherie DE, Caan MWA, Goya-Maldonado R, Belov V, Corruble E, Colle R, Couvy-Duchesne B, Kamishikiryo T, Shinzato H, Ichikawa N, Okada G, Okamoto Y, Harrison BJ, Davey CG, Jamieson AJ, Cullen KR, Başgöze Z, Klimes-Dougan B, Mueller BA, Benedetti F, Poletti S, Melloni EMT, Ching CRK, Zeng LL, Radua J, Han LKM, Jahanshad N, Thomopoulos SI, Pozzi E, Veltman DJ, Schmaal L, Thompson PM, Ruhe HG, Reneman L, Schrantee A Human brain mapping 39757979 Hum Brain Mapp 2025 Jan https://www.ncbi.nlm.nih.gov/pubmed/39757979
Population clustering of structural brain aging and its association with brain development. Duan H, Shi R, Kang J, Banaschewski T, Bokde ALW, Büchel C, Desrivières S, Flor H, Grigis A, Garavan H, Gowland PA, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Papadopoulos Orfanos D, Poustka L, Hohmann S, Nathalie Holz N, Fröhner J, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Lin X, Feng J eLife 39422662 Elife 2024 Oct 18 https://www.ncbi.nlm.nih.gov/pubmed/39422662
Genomic analysis of intracranial and subcortical brain volumes yields polygenic scores accounting for variation across ancestries. García-Marín LM, Campos AI, Diaz-Torres S, Rabinowitz JA, Ceja Z, Mitchell BL, Grasby KL, Thorp JG, Agartz I, Alhusaini S, Ames D, Amouyel P, Andreassen OA, Arfanakis K, Arias-Vasquez A, Armstrong NJ, Athanasiu L, Bastin ME, Beiser AS, Bennett DA, Bis JC, Boks MPM, Boomsma DI, Brodaty H, Brouwer RM, Buitelaar JK, Burkhardt R, Cahn W, Calhoun VD, Carmichael OT, Chakravarty M, Chen Q, Ching CRK, Cichon S, Crespo-Facorro B, Crivello F, Dale AM, Smith GD, de Geus EJC, De Jager PL, de Zubicaray GI, Debette S, DeCarli C, Depondt C, Desrivières S, Djurovic S, Ehrlich S, Erk S, Espeseth T, Fernández G, Filippi I, Fisher SE, Fleischman DA, Fletcher E, Fornage M, Forstner AJ, Francks C, Franke B, Ge T, Goldman AL, Grabe HJ, Green RC, Grimm O, Groenewold NA, Gruber O, Gudnason V, Håberg AK, Haukvik UK, Heinz A, Hibar DP, Hilal S, Himali JJ, Ho BC, Hoehn DF, Hoekstra PJ, Hofer E, Hoffmann W, Holmes AJ, Homuth G, Hosten N, Ikram MK, Ipser JC, Jack CR Jr, Jahanshad N, Jönsson EG, Kahn RS, Kanai R, Klein M, Knol MJ, Launer LJ, Lawrie SM, Hellard SL, Lee PH, Lemaître H, Li S, Liewald DCM, Lin H, Longstreth WT Jr, Lopez OL, Luciano M, Maillard P, Marquand AF, Martin NG, Martinot JL, Mather KA, Mattay VS, McMahon KL, Mecocci P, Melle I, Meyer-Lindenberg A, Mirza-Schreiber N, Milaneschi Y, Mosley TH, Mühleisen TW, Müller-Myhsok B, Maniega SM, Nauck M, Nho K, Niessen WJ, Nöthen MM, Nyquist PA, Oosterlaan J, Pandolfo M, Paus T, Pausova Z, Penninx BWJH, Pike GB, Psaty BM, Pütz B, Reppermund S, Rietschel MD, Risacher SL, Romanczuk-Seiferth N, Romero-Garcia R, Roshchupkin GV, Rotter JI, Sachdev PS, Sämann PG, Saremi A, Sargurupremraj M, Saykin AJ, Schmaal L, Schmidt H, Schmidt R, Schofield PR, Scholz M, Schumann G, Schwarz E, Shen L, Shin J, Sisodiya SM, Smith AV, Smoller JW, Soininen HS, Steen VM, Stein DJ, Stein JL, Thomopoulos SI, Toga AW, Tordesillas-Gutiérrez D, Trollor JN, Valdes-Hernandez MC, van T Ent D, van Bokhoven H, van der Meer D, van der Wee NJA, Vázquez-Bourgon J, Veltman DJ, Vernooij MW, Villringer A, Vinke LN, Völzke H, Walter H, Wardlaw JM, Weinberger DR, Weiner MW, Wen W, Westlye LT, Westman E, White T, Witte AV, Wolf C, Yang J, Zwiers MP, Ikram MA, Seshadri S, Thompson PM, Satizabal CL, Medland SE, Rentería ME Nature genetics 39433889 Nat Genet 2024 Nov https://www.ncbi.nlm.nih.gov/pubmed/39433889
Machine learning models for diagnosis and risk prediction in eating disorders, depression, and alcohol use disorder. Zhang Z, Robinson L, Whelan R, Jollans L, Wang Z, Nees F, Chu C, Bobou M, Du D, Cristea I, Banaschewski T, Barker GJ, Bokde ALW, Grigis A, Garavan H, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Orfanos DP, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Vaidya N, Walter H, Winterer J, Broulidakis MJ, van Noort BM, Stringaris A, Penttilä J, Grimmer Y, Insensee C, Becker A, Zhang Y, King S, Sinclair J, Schumann G, Schmidt U, Desrivières S Journal of affective disorders 39701465 J Affect Disord 2025 Jun 15 https://www.ncbi.nlm.nih.gov/pubmed/39701465
Sex is a defining feature of neuroimaging phenotypes in major brain disorders. Salminen LE, Tubi MA, Bright J, Thomopoulos SI, Wieand A, Thompson PM Human brain mapping 33949018 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33949018
Morphometric Gaussian Process for Landmarking on Grey Matter Tetrahedral Models. Fan Y, Leporé N, Wang Y Proceedings of SPIE--the International Society for Optical Engineering 33981127 Proc SPIE Int Soc Opt Eng 2020 Jan 3 https://www.ncbi.nlm.nih.gov/pubmed/33981127
Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation. Liang D, Elwell AL, Aygün N, Krupa O, Wolter JM, Kyere FA, Lafferty MJ, Cheek KE, Courtney KP, Yusupova M, Garrett ME, Ashley-Koch A, Crawford GE, Love MI, de la Torre-Ubieta L, Geschwind DH, Stein JL Nature neuroscience 34017130 Nat Neurosci 2021 Jul https://www.ncbi.nlm.nih.gov/pubmed/34017130
The additive impact of cardio-metabolic disorders and psychiatric illnesses on accelerated brain aging. Ryan MC, Hong LE, Hatch KS, Gao S, Chen S, Haerian K, Wang J, Goldwaser EL, Du X, Adhikari BM, Bruce H, Hare S, Kvarta MD, Jahanshad N, Nichols TE, Thompson PM, Kochunov P Human brain mapping 35112422 Hum Brain Mapp 2022 Apr 15 https://www.ncbi.nlm.nih.gov/pubmed/35112422
Diagnosis of bipolar disorders and body mass index predict clustering based on similarities in cortical thickness-ENIGMA study in 2436 individuals. McWhinney SR, Abé C, Alda M, Benedetti F, Bøen E, Del Mar Bonnin C, Borgers T, Brosch K, Canales-Rodríguez EJ, Cannon DM, Dannlowski U, Diaz-Zuluaga AM, Dietze L, Elvsåshagen T, Eyler LT, Fullerton JM, Goikolea JM, Goltermann J, Grotegerd D, Haarman BCM, Hahn T, Howells FM, Ingvar M, Kircher TTJ, Krug A, Kuplicki RT, Landén M, Lemke H, Liberg B, Lopez-Jaramillo C, Malt UF, Martyn FM, Mazza E, McDonald C, McPhilemy G, Meier S, Meinert S, Meller T, Melloni EMT, Mitchell PB, Nabulsi L, Nenadic I, Opel N, Ophoff RA, Overs BJ, Pfarr JK, Pineda-Zapata JA, Pomarol-Clotet E, Raduà J, Repple J, Richter M, Ringwald KG, Roberts G, Ross A, Salvador R, Savitz J, Schmitt S, Schofield PR, Sim K, Stein DJ, Stein F, Temmingh HS, Thiel K, Thomopoulos SI, van Haren NEM, Van Gestel H, Vargas C, Vieta E, Vreeker A, Waltemate L, Yatham LN, Ching CRK, Andreassen OA, Thompson PM, Hajek T, ENIGMA Bipolar Disorders Working Group Bipolar disorders 34894200 Bipolar Disord 2022 Aug https://www.ncbi.nlm.nih.gov/pubmed/34894200
Characterizing reward system neural trajectories from adolescence to young adulthood. Cao Z, Ottino-Gonzalez J, Cupertino RB, Juliano A, Chaarani B, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Millenet S, Fröhner JH, Robinson L, Smolka MN, Walter H, Winterer J, Schumann G, Whelan R, Mackey S, Garavan H, IMAGEN consortiu Developmental cognitive neuroscience 34894615 Dev Cogn Neurosci 2021 Dec https://www.ncbi.nlm.nih.gov/pubmed/34894615
Assessment of brain age in posttraumatic stress disorder: Findings from the ENIGMA PTSD and brain age working groups. Clausen AN, Fercho KA, Monsour M, Disner S, Salminen L, Haswell CC, Rubright EC, Watts AA, Buckley MN, Maron-Katz A, Sierk A, Manthey A, Suarez-Jimenez B, Olatunji BO, Averill CL, Hofmann D, Veltman DJ, Olson EA, Li G, Forster GL, Walter H, Fitzgerald J, Théberge J, Simons JS, Bomyea JA, Frijling JL, Krystal JH, Baker JT, Phan KL, Ressler K, Han LKM, Nawijn L, Lebois LAM, Schmaal L, Densmore M, Shenton ME, van Zuiden M, Stein M, Fani N, Simons RM, Neufeld RWJ, Lanius R, van Rooij S, Koch SBJ, Bonomo S, Jovanovic T, deRoon-Cassini T, Ely TD, Magnotta VA, He X, Abdallah CG, Etkin A, Schmahl C, Larson C, Rosso IM, Blackford JU, Stevens JS, Daniels JK, Herzog J, Kaufman ML, Olff M, Davidson RJ, Sponheim SR, Mueller SC, Straube T, Zhu X, Neria Y, Baugh LA, Cole JH, Thompson PM, Morey RA Brain and behavior 34907666 Brain Behav 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/34907666
Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis. Aygün N, Elwell AL, Liang D, Lafferty MJ, Cheek KE, Courtney KP, Mory J, Hadden-Ford E, Krupa O, de la Torre-Ubieta L, Geschwind DH, Love MI, Stein JL American journal of human genetics 34416157 Am J Hum Genet 2021 Sep 2 https://www.ncbi.nlm.nih.gov/pubmed/34416157
A meta-analysis of deep brain structural shape and asymmetry abnormalities in 2,833 individuals with schizophrenia compared with 3,929 healthy volunteers via the ENIGMA Consortium. Gutman BA, van Erp TGM, Alpert K, Ching CRK, Isaev D, Ragothaman A, Jahanshad N, Saremi A, Zavaliangos-Petropulu A, Glahn DC, Shen L, Cong S, Alnaes D, Andreassen OA, Doan NT, Westlye LT, Kochunov P, Satterthwaite TD, Wolf DH, Huang AJ, Kessler C, Weideman A, Nguyen D, Mueller BA, Faziola L, Potkin SG, Preda A, Mathalon DH, Bustillo J, Calhoun V, Ford JM, Walton E, Ehrlich S, Ducci G, Banaj N, Piras F, Piras F, Spalletta G, Canales-Rodríguez EJ, Fuentes-Claramonte P, Pomarol-Clotet E, Radua J, Salvador R, Sarró S, Dickie EW, Voineskos A, Tordesillas-Gutiérrez D, Crespo-Facorro B, Setién-Suero E, van Son JM, Borgwardt S, Schönborn-Harrisberger F, Morris D, Donohoe G, Holleran L, Cannon D, McDonald C, Corvin A, Gill M, Filho GB, Rosa PGP, Serpa MH, Zanetti MV, Lebedeva I, Kaleda V, Tomyshev A, Crow T, James A, Cervenka S, Sellgren CM, Fatouros-Bergman H, Agartz I, Howells F, Stein DJ, Temmingh H, Uhlmann A, de Zubicaray GI, McMahon KL, Wright M, Cobia D, Csernansky JG, Thompson PM, Turner JA, Wang L Human brain mapping 34498337 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/34498337
Effects of eight neuropsychiatric copy number variants on human brain structure. Modenato C, Kumar K, Moreau C, Martin-Brevet S, Huguet G, Schramm C, Jean-Louis M, Martin CO, Younis N, Tamer P, Douard E, Thébault-Dagher F, Côté V, Charlebois AR, Deguire F, Maillard AM, Rodriguez-Herreros B, Pain A, Richetin S, 16p11.2 European Consortium, Simons Searchlight Consortium, Melie-Garcia L, Kushan L, Silva AI, van den Bree MBM, Linden DEJ, Owen MJ, Hall J, Lippé S, Chakravarty M, Bzdok D, Bearden CE, Draganski B, Jacquemont S Translational psychiatry 34285187 Transl Psychiatry 2021 Jul 20 https://www.ncbi.nlm.nih.gov/pubmed/34285187
Sex and dependence related neuroanatomical differences in regular cannabis users: findings from the ENIGMA Addiction Working Group. Rossetti MG, Mackey S, Patalay P, Allen NB, Batalla A, Bellani M, Chye Y, Conrod P, Cousijn J, Garavan H, Goudriaan AE, Hester R, Martin-Santos R, Solowij N, Suo C, Thompson PM, Yücel M, Brambilla P, Lorenzetti V Translational psychiatry 33958576 Transl Psychiatry 2021 May 6 https://www.ncbi.nlm.nih.gov/pubmed/33958576
Endocannabinoid Gene × Gene Interaction Association to Alcohol Use Disorder in Two Adolescent Cohorts. Elkrief L, Spinney S, Vosberg DE, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Nees F, Papadopoulos Orfanos D, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Pausova Z, Paus T, Huguet G, Conrod P, IMAGEN consortium Frontiers in psychiatry 33959052 Front Psychiatry 2021 https://www.ncbi.nlm.nih.gov/pubmed/33959052
Sex differences in neural correlates of common psychopathological symptoms in early adolescence. Biondo F, Thunell CN, Xu B, Chu C, Jia T, Ing A, Quinlan EB, Tay N, Banaschewski T, Bokde ALW, Büchel C, Desrivières S, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Lemaitre H, Nees F, Orfanos DP, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Barker ED, Schumann G, IMAGEN Consortium Psychological medicine 33769238 Psychol Med 2022 Oct https://www.ncbi.nlm.nih.gov/pubmed/33769238
Testing the extreme male brain hypothesis: Is autism spectrum disorder associated with a more male-typical brain? van Eijk L, Zietsch BP Autism research : official journal of the International Society for Autism Research 34008924 Autism Res 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/34008924
Structural and functional brain alterations revealed by neuroimaging in CNV carriers. Moreau CA, Ching CR, Kumar K, Jacquemont S, Bearden CE Current opinion in genetics & development 33812299 Curr Opin Genet Dev 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/33812299
Associations of alcohol use, HIV infection, and age with brain white matter microstructure. Monnig MA, Gullett JM, Porges EC, Woods AJ, Monti PM, Tashima K, Jahanshad N, Thompson P, Nir T, Cohen RA Journal of neurovirology 34750783 J Neurovirol 2021 Dec https://www.ncbi.nlm.nih.gov/pubmed/34750783
Brain Correlates of Suicide Attempt in 18,925 Participants Across 18 International Cohorts. Campos AI, Thompson PM, Veltman DJ, Pozzi E, van Veltzen LS, Jahanshad N, Adams MJ, Baune BT, Berger K, Brosch K, Bülow R, Connolly CG, Dannlowski U, Davey CG, de Zubicaray GI, Dima D, Erwin-Grabner T, Evans JW, Fu CHY, Gotlib IH, Goya-Maldonado R, Grabe HJ, Grotegerd D, Harris MA, Harrison BJ, Hatton SN, Hermesdorf M, Hickie IB, Ho TC, Kircher T, Krug A, Lagopoulos J, Lemke H, McMahon K, MacMaster FP, Martin NG, McIntosh AM, Medland SE, Meinert S, Meller T, Nenadic I, Opel N, Redlich R, Reneman L, Repple J, Sacchet MD, Schmitt S, Schrantee A, Sim K, Singh A, Stein F, Strike LT, van der Wee NJA, van der Werff SJA, Völzke H, Waltemate L, Whalley HC, Wittfeld K, Wright MJ, Yang TT, Zarate CA, Schmaal L, Rentería ME, ENIGMA-MDD Working Group Biological psychiatry 34172278 Biol Psychiatry 2021 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/34172278
Influence of insulin sensitivity on food cue evoked functional brain connectivity in children. Semeia L, Veit R, Zhao S, Luo S, Angelo B, Birkenfeld AL, Preissl H, Xiang AH, Kullmann S, Page KA bioRxiv : the preprint server for biology 38405878 bioRxiv 2024 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/38405878
Interplay of early negative life events, development of orbitofrontal cortical thickness and depression in young adulthood. Backhausen LL, Granzow J, Fröhner JH, Artiges E, Paillère-Martinot ML, Lemaître H, Sticca F, Banaschewski T, Desrivières S, Grigis A, Heinz A, Brühl R, Papadopoulos-Orfanos D, Poustka L, Hohmann S, Robinson L, Walter H, Winterer J, Schumann G, Martinot JL, Smolka MN, Vetter NC, IMAGEN Consortium JCPP advances 38486954 JCPP Adv 2024 Mar https://www.ncbi.nlm.nih.gov/pubmed/38486954
Data-driven biomarkers better associate with stroke motor outcomes than theory-based biomarkers. Olafson ER, Sperber C, Jamison KW, Bowren MD Jr, Boes AD, Andrushko JW, Borich MR, Boyd LA, Cassidy JM, Conforto AB, Cramer SC, Dula AN, Geranmayeh F, Hordacre B, Jahanshad N, Kautz SA, Tavenner BP, MacIntosh BJ, Piras F, Robertson AD, Seo NJ, Soekadar SR, Thomopoulos SI, Vecchio D, Weng TB, Westlye LT, Winstein CJ, Wittenberg GF, Wong KA, Thompson PM, Liew SL, Kuceyeski AF Brain communications 39171205 Brain Commun 2024 https://www.ncbi.nlm.nih.gov/pubmed/39171205
The Pattern and Staging of Brain Atrophy in Spinocerebellar Ataxia Type 2 (SCA2): MRI Volumetrics from ENIGMA-Ataxia. Robertson JW, Adanyeguh I, Bender B, Boesch S, Brunetti A, Cocozza S, Coutinho L, Deistung A, Diciotti S, Dogan I, Durr A, Fernandez-Ruiz J, Göricke SL, Grisoli M, Han S, Mariotti C, Marzi C, Mascalchi M, Mochel F, Nachbauer W, Nanetti L, Nigri A, Ono SE, Onyike CU, Prince JL, Reetz K, Romanzetti S, Saccà F, Synofzik M, Ghizoni Teive HA, Thomopoulos SI, Thompson PM, Timmann D, Ying SH, Harding IH, Hernandez-Castillo CR bioRxiv : the preprint server for biology 39345594 bioRxiv 2024 Sep 17 https://www.ncbi.nlm.nih.gov/pubmed/39345594
Automatic rating of incomplete hippocampal inversions evaluated across multiple cohorts. Hemforth L, Couvy-Duchesne B, De Matos K, Brianceau C, Joulot M, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Artiges E, Papadopoulos D, Lemaitre H, Paus T, Poustka L, Hohman S, Holz N, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Büchel C, Poline JB, Itterman B, Frouin V, Martin A, IMAGEN study group, Cury C, Colliot O ArXiv 39148932 ArXiv 2025 Jan 20 https://www.ncbi.nlm.nih.gov/pubmed/39148932
Unique Functional Neuroimaging Signatures of Genetic Versus Clinical High Risk for Psychosis. Schleifer CH, Chang SE, Amir CM, O'Hora KP, Fung H, Kang JWD, Kushan-Wells L, Daly E, Di Fabio F, Frascarelli M, Gudbrandsen M, Kates WR, Murphy D, Addington J, Anticevic A, Cadenhead KS, Cannon TD, Cornblatt BA, Keshavan M, Mathalon DH, Perkins DO, Stone WS, Walker E, Woods SW, Uddin LQ, Kumar K, Hoftman GD, Bearden CE Biological psychiatry 39181389 Biol Psychiatry 2025 Jan 15 https://www.ncbi.nlm.nih.gov/pubmed/39181389
Distinct personality profiles associated with disease risk and diagnostic status in eating disorders. Zhang Z, Robinson L, Campbell I, Irish M, Bobou M, Winterer J, Zhang Y, King S, Vaidya N, Broulidakis MJ, van Noort BM, Stringaris A, Banaschewski T, Bokde ALW, Brühl R, Fröhner JH, Grigis A, Garavan H, Gowland P, Heinz A, Hohmann S, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Sinclair J, Smolka MN, Walter H, Whelan R, Schumann G, Schmidt U, Desrivières S, IMAGEN, ESTRA, STRATIFY Consortia Journal of affective disorders 38810783 J Affect Disord 2024 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/38810783
Accelerated Aging after Traumatic Brain Injury: An ENIGMA Multi-Cohort Mega-Analysis. Dennis EL, Vervoordt S, Adamson MM, Houshang A, Bigler ED, Caeyenberghs K, Cole JH, Dams-O'Connor K, Deutscher EM, Dobryakova E, Genova HM, Grafman JH, Håberg AK, Hellstrøm T, Irimia A, Koliatsos VE, Lindsey HM, Livny A, Menon DK, Merkley TL, Mohamed AZ, Mondello S, Monti MM, Newcombe VF, Newsome MR, Ponsford J, Rabinowitz A, Smevik H, Spitz G, Venkatesan UM, Westlye LT, Zafonte R, Thompson PM, Wilde EA, Olsen A, Hillary FG Annals of neurology 38845484 Ann Neurol 2024 Aug https://www.ncbi.nlm.nih.gov/pubmed/38845484
Beyond the Global Brain Differences: Intraindividual Variability Differences in 1q21.1 Distal and 15q11.2 BP1-BP2 Deletion Carriers. Boen R, Kaufmann T, van der Meer D, Frei O, Agartz I, Ames D, Andersson M, Armstrong NJ, Artiges E, Atkins JR, Bauer J, Benedetti F, Boomsma DI, Brodaty H, Brosch K, Buckner RL, Cairns MJ, Calhoun V, Caspers S, Cichon S, Corvin AP, Crespo-Facorro B, Dannlowski U, David FS, de Geus EJC, de Zubicaray GI, Desrivières S, Doherty JL, Donohoe G, Ehrlich S, Eising E, Espeseth T, Fisher SE, Forstner AJ, Fortaner-Uyà L, Frouin V, Fukunaga M, Ge T, Glahn DC, Goltermann J, Grabe HJ, Green MJ, Groenewold NA, Grotegerd D, Grøntvedt GR, Hahn T, Hashimoto R, Hehir-Kwa JY, Henskens FA, Holmes AJ, Håberg AK, Haavik J, Jacquemont S, Jansen A, Jockwitz C, Jönsson EG, Kikuchi M, Kircher T, Kumar K, Le Hellard S, Leu C, Linden DE, Liu J, Loughnan R, Mather KA, McMahon KL, McRae AF, Medland SE, Meinert S, Moreau CA, Morris DW, Mowry BJ, Mühleisen TW, Nenadić I, Nöthen MM, Nyberg L, Ophoff RA, Owen MJ, Pantelis C, Paolini M, Paus T, Pausova Z, Persson K, Quidé Y, Marques TR, Sachdev PS, Sando SB, Schall U, Scott RJ, Selbæk G, Shumskaya E, Silva AI, Sisodiya SM, Stein F, Stein DJ, Straube B, Streit F, Strike LT, Teumer A, Teutenberg L, Thalamuthu A, Tooney PA, Tordesillas-Gutierrez D, Trollor JN, van 't Ent D, van den Bree MBM, van Haren NEM, Vázquez-Bourgon J, Völzke H, Wen W, Wittfeld K, Ching CRK, Westlye LT, Thompson PM, Bearden CE, Selmer KK, Alnæs D, Andreassen OA, Sønderby IE, ENIGMA-CNV Working Group Biological psychiatry 37661008 Biol Psychiatry 2024 Jan 15 https://www.ncbi.nlm.nih.gov/pubmed/37661008
Genetics of cell-type-specific post-transcriptional gene regulation during human neurogenesis. Aygün N, Krupa O, Mory J, Le B, Valone J, Liang D, Love MI, Stein JL bioRxiv : the preprint server for biology 37693528 bioRxiv 2023 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/37693528
Remodeling of the Cortical Structural Connectome in Posttraumatic Stress Disorder: Results From the ENIGMA-PGC Posttraumatic Stress Disorder Consortium. Sun D, Rakesh G, Clarke-Rubright EK, Haswell CC, Logue MW, O'Leary EN, Cotton AS, Xie H, Dennis EL, Jahanshad N, Salminen LE, Thomopoulos SI, Rashid FM, Ching CRK, Koch SBJ, Frijling JL, Nawijn L, van Zuiden M, Zhu X, Suarez-Jimenez B, Sierk A, Walter H, Manthey A, Stevens JS, Fani N, van Rooij SJH, Stein MB, Bomyea J, Koerte I, Choi K, van der Werff SJA, Vermeiren RRJM, Herzog JI, Lebois LAM, Baker JT, Ressler KJ, Olson EA, Straube T, Korgaonkar MS, Andrew E, Zhu Y, Li G, Ipser J, Hudson AR, Peverill M, Sambrook K, Gordon E, Baugh LA, Forster G, Simons RM, Simons JS, Magnotta VA, Maron-Katz A, du Plessis S, Disner SG, Davenport ND, Grupe D, Nitschke JB, deRoon-Cassini TA, Fitzgerald J, Krystal JH, Levy I, Olff M, Veltman DJ, Wang L, Neria Y, De Bellis MD, Jovanovic T, Daniels JK, Shenton ME, van de Wee NJA, Schmahl C, Kaufman ML, Rosso IM, Sponheim SR, Hofmann DB, Bryant RA, Fercho KA, Stein DJ, Mueller SC, Phan KL, McLaughlin KA, Davidson RJ, Larson C, May G, Nelson SM, Abdallah CG, Gomaa H, Etkin A, Seedat S, Harpaz-Rotem I, Liberzon I, Wang X, Thompson PM, Morey RA Biological psychiatry. Cognitive neuroscience and neuroimaging 35307575 Biol Psychiatry Cogn Neurosci Neuroimaging 2022 Sep https://www.ncbi.nlm.nih.gov/pubmed/35307575
Impact of adverse life experiences on pain, depression, anxiety, and comorbidities: a youth longitudinal sample. Sperandio G, Moliadze V, Attal N, Bouhassira D, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Artiges E, Papadopoulos Orfanos D, Lemaitre H, Paus T, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Flor H, Nees F Pain reports 41635480 Pain Rep 2026 Apr https://www.ncbi.nlm.nih.gov/pubmed/41635480
Mirror effect of genomic deletions and duplications on cognitive ability across the human cerebral cortex. Kumar K, Kazem S, Huguet G, Engchuan W, Kopal J, Renne T, Shanta O, Thiruvahindrapuram B, MacDonald JR, Mollon J, Schultz LM, Knowles EEM, Porteous D, Davies G, Redmond P, Harris SE, Cox SR, Schumann G, Pausova Z, Greenwood CMT, Paus T, Scherer SW, Almasy L, Sebat J, Glahn DC, Dumas G, Jacquemont S bioRxiv : the preprint server for biology 41292898 bioRxiv 2025 Nov 12 https://www.ncbi.nlm.nih.gov/pubmed/41292898
Neural correlates of human fear conditioning and sources of variability in 2199 individuals. Radua J, Savage HS, Vilajosana E, Jamieson A, Abler B, Åhs F, Beckers T, Cardoner N, Cisler JM, Diniz JB, Bach DR, Elsenbruch S, Greening SG, Holt DJ, Kaczkurkin AN, Keil A, Kindt M, Koch K, LaBar KS, Lam CL, Larson CL, Lonsdorf TB, Merz CJ, McLaughlin KA, Neria Y, Pine DS, van Reekum CM, Shackman AJ, Soriano-Mas C, Spoormaker VI, Stout DM, Straube B, Straube T, Tuominen L, Visser RM, Ahumada L, Arolt V, Batistuzzo MC, Bazán PR, Biggs EE, Cano M, Chavarría-Elizondo P, Cooper SE, Dannlowski U, de la Peña-Arteaga V, DeCross SN, Domschke K, Ehlers MR, Graner JL, Hamm AO, Herrmann MJ, Huggins AA, Icenhour A, Juaneda-Seguí A, Junghoefer M, Kircher T, Koelkebeck K, Kuhn M, Labrenz F, Lissek SM, Lotze M, Lueken U, Margraf J, Martínez-Zalacaín I, Moeck R, Morriss J, Ortuño M, Pittig A, Porta-Casteras D, Richter J, Ridderbusch IC, Rief W, Roesmann K, Rosén J, Rußmann AN, Sjouwerman R, Spohrs J, Ströhle A, Suarez-Jimenez B, Ulrich M, Wittchen HU, Zhu X, Waller L, Walter H, Thompson PM, Bas-Hoogendam JM, Groenewold NA, J Stein D, Van der Wee NJ, Dunsmoor JE, Marquand AF, J Harrison B, Fullana MA Nature communications 40849409 Nat Commun 2025 Aug 23 https://www.ncbi.nlm.nih.gov/pubmed/40849409
Impulsivity and neuroticism share distinct functional connectivity signatures with alcohol-use risk in youth. Cheng A, Lichenstein S, Chaarani B, Liang Q, Babaeianjelodar M, Riley SJ, Luo W, Horien C, Greene AS, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Papadopoulos Orfanos D, Poustka L, Hohmann S, Holz N, Baeuchl C, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Constable RT, Pearlson G, Garavan H, Yip SW Molecular psychiatry 40913110 Mol Psychiatry 2026 Feb https://www.ncbi.nlm.nih.gov/pubmed/40913110
Brain Age in Conduct Disorder:: A Mega-Analysis of the ENIGMA Antisocial Behavior Working Group. Dugré JR, Gao Y, Staginnus M, Marsh AA, Kypta-Vivanco A, Cubillo AI, Dietrich A, Bernhard A, Martinelli A, Dykstra AH, Smaragdi A, Sethi A, Bokde ALW, Franke B, Arango C, Boateng CPS, Stadler C, Freitag CM, Townsend CD, Monk CS, Hagan CC, Mitchell C, Dong D, Díaz DE, Brandeis D, Murphy D, Sukhodolsky DG, Sonuga-Barke EJS, Cardinale EM, Viding E, Kohls G, Schumann G, Cornwell H, Phillips H, Westerman HB, Chen H, Sagar-Ouriaghli I, Rogers JC, Buitelaar JK, Martinot JL, Glennon JC, Zhou J, Zhang J, Naaijen J, Castro-Fornieles J, Michalska KJ, Gonzalez-Madruga K, Ibrahim K, Sully K, Berluti K, Konrad K, Lamers K, Mycue LE, Passamonti L, Hyde LW, Oosterling M, Alonso MJP, Stevens MC, Craig M, Rosa-Justicia M, Ploe ML, Holz N, van der Wee NJA, Toschi N, Jabeen N, Raschle NM, Colins OF, Santosh P, Aggensteiner PM, Hoekstra PJ, Ming Q, Wu Q, Jackson RL, Ma R, Blair RJR, Vermeiren R, Pauli R, Roberts R, Burt SA, Bajaj S, Chester SC, Minosse S, Desrivieres S, Banaschewski T, Schulze UME, Chen X, Wang X, Sun X, Jiang Y, Jahanshad N, Thomopoulos SI, Ching CRK, Kang MJY, Thompson PM, Pine DS, Baskin-Sommers A, Cecil CAM, Aghajani M, Fairchild G, ENIGMA Antisocial Behavior Consortium, De Brito SA bioRxiv : the preprint server for biology 41648388 bioRxiv 2026 Jan 21 https://www.ncbi.nlm.nih.gov/pubmed/41648388
Optimizing the Approach to Calculating CST Lesion Load in Ischemic Stroke Patients for Understanding Motor Outcomes. Williamson BJ, Behymer T, Schwarz A, Vagal A, Winstein CJ, Borich MR, Hanlon C, Dimyan M, Conforto AB, Piras F, Vecchio D, Hordacre B, Boyd LA, Ferris JK, Cassidy JM, Thomopoulos SI, Jahanshad N, Thompson PM, Khan M, Liew SL, Cramer SC Neurorehabilitation and neural repair 41766678 Neurorehabil Neural Repair 2026 Jun https://www.ncbi.nlm.nih.gov/pubmed/41766678
A systematic review of neuroimaging epigenetic research: calling for an increased focus on development. Walton E, Baltramonaityte V, Calhoun V, Heijmans BT, Thompson PM, Cecil CAM Molecular psychiatry 37185958 Mol Psychiatry 2023 Jul https://www.ncbi.nlm.nih.gov/pubmed/37185958
Independent contribution of polygenic risk for schizophrenia and cannabis use in predicting psychotic-like experiences in young adulthood: testing gene × environment moderation and mediation. Elkrief L, Lin B, Marchi M, Afzali MH, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Luykx J, Boks MP, Conrod PJ, IMAGEN consortium Psychological medicine 37310336 Psychol Med 2023 Apr https://www.ncbi.nlm.nih.gov/pubmed/37310336
Normative Modeling of Brain Morphometry in Clinical High Risk for Psychosis. ENIGMA Clinical High Risk for Psychosis Working Group, Haas SS, Ge R, Agartz I, Amminger GP, Andreassen OA, Bachman P, Baeza I, Choi S, Colibazzi T, Cropley VL, de la Fuente-Sandoval C, Ebdrup BH, Fortea A, Fusar-Poli P, Glenthøj BY, Glenthøj LB, Haut KM, Hayes RA, Heekeren K, Hooker CI, Hwang WJ, Jahanshad N, Kaess M, Kasai K, Katagiri N, Kim M, Kindler J, Koike S, Kristensen TD, Kwon JS, Lawrie SM, Lebedeva I, Lee J, Lemmers-Jansen ILJ, Lin A, Ma X, Mathalon DH, McGuire P, Michel C, Mizrahi R, Mizuno M, Møller P, Mora-Durán R, Nelson B, Nemoto T, Nordentoft M, Nordholm D, Omelchenko MA, Pantelis C, Pariente JC, Raghava JM, Reyes-Madrigal F, Røssberg JI, Rössler W, Salisbury DF, Sasabayashi D, Schall U, Smigielski L, Sugranyes G, Suzuki M, Takahashi T, Tamnes CK, Theodoridou A, Thomopoulos SI, Thompson PM, Tomyshev AS, Uhlhaas PJ, Værnes TG, van Amelsvoort TAMJ, van Erp TGM, Waltz JA, Wenneberg C, Westlye LT, Wood SJ, Zhou JH, Hernaus D, Jalbrzikowski M, Kahn RS, Corcoran CM, Frangou S JAMA psychiatry 37819650 JAMA Psychiatry 2024 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/37819650
Hemispheric asymmetry in cortical thinning reflects intrinsic organization of the neurotransmitter systems and homotopic functional connectivity. Liao Z, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Papadopoulos Orfanos D, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Paus T, IMAGEN Consortium Proceedings of the National Academy of Sciences of the United States of America 37831741 Proc Natl Acad Sci U S A 2023 Oct 17 https://www.ncbi.nlm.nih.gov/pubmed/37831741
Trajectories of cortical structures associated with stress across adolescence: a bivariate latent change score approach. Nweze T, Banaschewski T, Ajaelu C, Okoye C, Ezenwa M, Whelan R, Papadopoulos Orfanos D, Bokde ALW, Desrivières S, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Paus T, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Walter H, Schumann G, Hanson JL, IMAGEN Consortium Journal of child psychology and psychiatry, and allied disciplines 36990655 J Child Psychol Psychiatry 2023 Aug https://www.ncbi.nlm.nih.gov/pubmed/36990655
Subcortical brain alterations in carriers of genomic copy number variants. Kumar K, Modenato C, Moreau C, Ching CRK, Harvey A, Martin-Brevet S, Huguet G, Jean-Louis M, Douard E, Martin CO, Younis N, Tamer P, Maillard AM, Rodriguez-Herreros B, Pain A, Richetin S, 16p11.2 European Consortium, Simons Searchlight Consortium, Kushan L, Isaev D, Alpert K, Ragothaman A, Turner JA, Wang L, Ho TC, Schmaal L, Silva AI, van den Bree MBM, Linden DEJ, Owen MJ, Hall J, Lippé S, Dumas G, Draganski B, Gutman BA, Sønderby IE, Andreassen OA, Schultz L, Almasy L, Glahn DC, Bearden CE, Thompson PM, Jacquemont S medRxiv : the preprint server for health sciences 36865328 medRxiv 2023 Feb 22 https://www.ncbi.nlm.nih.gov/pubmed/36865328
Brain Aging in Specific Phobia: An ENIGMA-Anxiety Mega-Analysis. Blake KV, Hilbert K, Ipser JC, Han LKM, Bas-Hoogendam JM, Åhs F, Bauer J, Beesdo-Baum K, Björkstrand J, Blanco-Hinojo L, Böhnlein J, Bülow R, Cano M, Cardoner N, Caseras X, Dannlowski U, Fredrikson M, Goossens L, Grabe HJ, Grotegerd D, Hahn T, Hamm A, Heinig I, Herrmann MJ, Hofmann D, Jamalabadi H, Jansen A, Kindt M, Kircher T, Klahn AL, Koelkebeck K, Krug A, Leehr EJ, Lotze M, Margraf J, Muehlhan M, Nenadić I, Peñate W, Pittig A, Plag J, Pujol J, Richter J, Ridderbusch IC, Rivero F, Schäfer A, Schäfer J, Schienle A, Schrammen E, Schruers K, Seidl E, Stark RM, Straube B, Straube T, Ströhle A, Teutenberg L, Thomopoulos SI, Ventura-Bort C, Visser RM, Völzke H, Wabnegger A, Wendt J, Wittchen HU, Wittfeld K, Yang Y, Zilverstand A, Zwanzger P, Schmaal L, Aghajani M, Pine DS, Thompson PM, van der Wee NJA, Stein DJ, Lueken U, Groenewold NA medRxiv : the preprint server for health sciences 40166564 medRxiv 2025 Mar 20 https://www.ncbi.nlm.nih.gov/pubmed/40166564
Cortical differences across psychiatric disorders and associated common and rare genetic variants. Kumar K, Liao Z, Kopal J, Moreau C, Ching CRK, Modenato C, Snyder W, Kazem S, Martin CO, Bélanger AM, Fontaine VK, Jizi K, Boen R, Huguet G, Saci Z, Kushan L, Silva AI, 16p11.2 European Consortium, Simons Searchlight Consortium, van den Bree MBM, Linden DEJ, Owen MJ, Hall J, Lippé S, Dumas G, Draganski B, Almasy L, Thomopoulos SI, Jahanshad N, Sønderby IE, Andreassen OA, Glahn DC, Raznahan A, Bearden CE, Paus T, Thompson PM, Jacquemont S medRxiv : the preprint server for health sciences 40321288 medRxiv 2025 Apr 19 https://www.ncbi.nlm.nih.gov/pubmed/40321288
Lifespan investigation of brain volumetric changes associated with substance use disorders. Shi R, Xiang S, Alnæs D, Chen D, Chen Z, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Garavan H, Gowland P, Grigis A, Heinz A, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Smolka MN, Hohmann S, Vaidya N, Walter H, Whelan R, Schumann G, Sahakian BJ, Westlye LT, Robbins TW, Lin X, Jia T, Feng J, IMAGEN Consortium Research square 40678209 Res Sq 2025 Jun 26 https://www.ncbi.nlm.nih.gov/pubmed/40678209
Variation in moment-to-moment brain state engagement follows a consistent trajectory during development. Ye J, Tejavibulya L, Dai W, Cope LM, Hardee JE, Heitzeg MM, Lichenstein S, Yip SW, Banaschewski T, Baker GJ, Bokde ALW, Brühl R, Desrivières S, Flor H, Gowland P, Grigis A, Heinz A, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Holz N, Baeuchl C, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Garavan H, Chaarani B, Gee DG, Baskin-Sommers A, Casey BJ, IMAGEN Consortium, Scheinost D Neuron 40967219 Neuron 2025 Nov 19 https://www.ncbi.nlm.nih.gov/pubmed/40967219
Chronic pain is linked to a resting-state neural archetype that optimizes learning from punishments. Scarlatti F, Dormegny-Jeanjean L, Schefzik R, Banaschewski T, Bokde ALW, Brühl R, Desrivières S, Garavan H, Gowland P, Grigis A, Heinz A, Martinot JL, Martinot MP, Artiges E, Orfanos DP, Poustka L, Smolka MN, Hohmann S, Holz N, Vaidya N, Walter H, Whelan R, Schumann G, Nees F, Schwarz E, Löffler M, Foucher JR, Flor H, IMAGEN Consortium bioRxiv : the preprint server for biology 40791559 bioRxiv 2025 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/40791559
Joint genetic analysis of hippocampal size in mouse and human identifies a novel gene linked to neurodegenerative disease. Ashbrook DG, Williams RW, Lu L, Stein JL, Hibar DP, Nichols TE, Medland SE, Thompson PM, Hager R BMC genomics 25280473 BMC Genomics 2014 Oct 3 https://www.ncbi.nlm.nih.gov/pubmed/25280473
Physical activity, body mass index, and brain atrophy in Alzheimer's disease. Boyle CP, Raji CA, Erickson KI, Lopez OL, Becker JT, Gach HM, Longstreth WT Jr, Teverovskiy L, Kuller LH, Carmichael OT, Thompson PM Neurobiology of aging 25248607 Neurobiol Aging 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/25248607
Thalamic alterations in preterm neonates and their relation to ventral striatum disturbances revealed by a combined shape and pose analysis. Lao Y, Wang Y, Shi J, Ceschin R, Nelson MD, Panigrahy A, Leporé N Brain structure & function 25366970 Brain Struct Funct 2016 Jan https://www.ncbi.nlm.nih.gov/pubmed/25366970
Pleiotropic locus for emotion recognition and amygdala volume identified using univariate and bivariate linkage. Knowles EE, McKay DR, Kent JW Jr, Sprooten E, Carless MA, Curran JE, de Almeida MA, Dyer TD, Göring HH, Olvera RL, Duggirala R, Fox PT, Almasy L, Blangero J, Glahn DC The American journal of psychiatry 25322361 Am J Psychiatry 2015 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/25322361
Investigating brain connectivity heritability in a twin study using diffusion imaging data. Shen KK, Rose S, Fripp J, McMahon KL, de Zubicaray GI, Martin NG, Thompson PM, Wright MJ, Salvado O NeuroImage 24973604 Neuroimage 2014 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/24973604
Functional connectivity in autosomal dominant and late-onset Alzheimer disease. Thomas JB, Brier MR, Bateman RJ, Snyder AZ, Benzinger TL, Xiong C, Raichle M, Holtzman DM, Sperling RA, Mayeux R, Ghetti B, Ringman JM, Salloway S, McDade E, Rossor MN, Ourselin S, Schofield PR, Masters CL, Martins RN, Weiner MW, Thompson PM, Fox NC, Koeppe RA, Jack CR Jr, Mathis CA, Oliver A, Blazey TM, Moulder K, Buckles V, Hornbeck R, Chhatwal J, Schultz AP, Goate AM, Fagan AM, Cairns NJ, Marcus DS, Morris JC, Ances BM JAMA neurology 25069482 JAMA Neurol 2014 Sep https://www.ncbi.nlm.nih.gov/pubmed/25069482
Skull-stripping with machine learning deformable organisms. Prasad G, Joshi AA, Feng A, Toga AW, Thompson PM, Terzopoulos D Journal of neuroscience methods 25124851 J Neurosci Methods 2014 Oct 30 https://www.ncbi.nlm.nih.gov/pubmed/25124851
An advanced white matter tract analysis in frontotemporal dementia and early-onset Alzheimer's disease. Daianu M, Mendez MF, Baboyan VG, Jin Y, Melrose RJ, Jimenez EE, Thompson PM Brain imaging and behavior 26515192 Brain Imaging Behav 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/26515192
Information-Theoretic Characterization of Blood Panel Predictors for Brain Atrophy and Cognitive Decline in the Elderly. Madsen SK, Ver Steeg G, Mezher A, Jahanshad N, Nir TM, Hua X, Gutman BA, Galstyan A, Thompson PM, Alzheimer’s Disease Neuroimaging Initiative (ADNI) Proceedings. IEEE International Symposium on Biomedical Imaging 26413208 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413208
Comment: Getting a handle on HAND in the era of cART. Cohen RA, Navia B Neurology 26718565 Neurology 2016 Jan 26 https://www.ncbi.nlm.nih.gov/pubmed/26718565
Heritability and reliability of automatically segmented human hippocampal formation subregions. Whelan CD, Hibar DP, van Velzen LS, Zannas AS, Carrillo-Roa T, McMahon K, Prasad G, Kelly S, Faskowitz J, deZubiracay G, Iglesias JE, van Erp TGM, Frodl T, Martin NG, Wright MJ, Jahanshad N, Schmaal L, Sämann PG, Thompson PM, Alzheimer's Disease Neuroimaging Initiative NeuroImage 26747746 Neuroimage 2016 Mar https://www.ncbi.nlm.nih.gov/pubmed/26747746
Abnormal asymmetries in subcortical brain volume in schizophrenia. Okada N, Fukunaga M, Yamashita F, Koshiyama D, Yamamori H, Ohi K, Yasuda Y, Fujimoto M, Watanabe Y, Yahata N, Nemoto K, Hibar DP, van Erp TG, Fujino H, Isobe M, Isomura S, Natsubori T, Narita H, Hashimoto N, Miyata J, Koike S, Takahashi T, Yamasue H, Matsuo K, Onitsuka T, Iidaka T, Kawasaki Y, Yoshimura R, Watanabe Y, Suzuki M, Turner JA, Takeda M, Thompson PM, Ozaki N, Kasai K, Hashimoto R Molecular psychiatry 26782053 Mol Psychiatry 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/26782053
Response to Dr Fried & Dr Kievit, and Dr Malhi et al. Schmaal L, Veltman DJ, van Erp TG, Sämann PG, Frodl T, Jahanshad N, Loehrer E, Vernooij MW, Niessen WJ, Ikram MA, Wittfeld K, Grabe HJ, Block A, Hegenscheid K, Hoehn D, Czisch M, Lagopoulos J, Hatton SN, Hickie IB, Goya-Maldonado R, Krämer B, Gruber O, Couvy-Duchesne B, Rentería ME, Strike LT, Wright MJ, de Zubicaray GI, McMahon KL, Medland SE, Gillespie NA, Hall GB, van Velzen LS, van Tol MJ, van der Wee NJ, Veer IM, Walter H, Schramm E, Normann C, Schoepf D, Konrad C, Zurowski B, McIntosh AM, Whalley HC, Sussmann JE, Godlewska BR, Fischer FH, Penninx BW, Thompson PM, Hibar DP Molecular psychiatry 26903270 Mol Psychiatry 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/26903270
Algebraic connectivity of brain networks shows patterns of segregation leading to reduced network robustness in Alzheimer's disease. Daianu M, Jahanshad N, Nir TM, Leonardo CD, Jack CR Jr, Weiner MW, Bernstein MA, Thompson PM Computational diffusion MRI. CDMRI (Workshop) 26640830 Comput Diffus MRI 2014 https://www.ncbi.nlm.nih.gov/pubmed/26640830
Head Motion and Inattention/Hyperactivity Share Common Genetic Influences: Implications for fMRI Studies of ADHD. Couvy-Duchesne B, Ebejer JL, Gillespie NA, Duffy DL, Hickie IB, Thompson PM, Martin NG, de Zubicaray GI, McMahon KL, Medland SE, Wright MJ PloS one 26745144 PLoS One 2016 https://www.ncbi.nlm.nih.gov/pubmed/26745144
Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept. Franke B, Stein JL, Ripke S, Anttila V, Hibar DP, van Hulzen KJE, Arias-Vasquez A, Smoller JW, Nichols TE, Neale MC, McIntosh AM, Lee P, McMahon FJ, Meyer-Lindenberg A, Mattheisen M, Andreassen OA, Gruber O, Sachdev PS, Roiz-Santiañez R, Saykin AJ, Ehrlich S, Mather KA, Turner JA, Schwarz E, Thalamuthu A, Shugart YY, Ho YY, Martin NG, Wright MJ, Schizophrenia Working Group of the Psychiatric Genomics Consortium, ENIGMA Consortium, O'Donovan MC, Thompson PM, Neale BM, Medland SE, Sullivan PF Nature neuroscience 26854805 Nat Neurosci 2016 Mar https://www.ncbi.nlm.nih.gov/pubmed/26854805
Multi-Shell Hybrid Diffusion Imaging (HYDI) at 7 Tesla in TgF344-AD Transgenic Alzheimer Rats. Daianu M, Jacobs RE, Weitz TM, Town TC, Thompson PM PloS one 26683657 PLoS One 2015 https://www.ncbi.nlm.nih.gov/pubmed/26683657
Tensor-Based Morphometry Reveals Volumetric Deficits in Moderate=Severe Pediatric Traumatic Brain Injury. Dennis EL, Hua X, Villalon-Reina J, Moran LM, Kernan C, Babikian T, Mink R, Babbitt C, Johnson J, Giza CC, Thompson PM, Asarnow RF Journal of neurotrauma 26393494 J Neurotrauma 2016 May 1 https://www.ncbi.nlm.nih.gov/pubmed/26393494
FEATURE SELECTION IMPROVES THE ACCURACY OF CLASSIFYING ALZHEIMER DISEASE USING DIFFUSION TENSOR IMAGES. Demirhan A, Nir TM, Zavaliangos-Petropulu A, Jack CR Jr, Weiner MW, Bernstein MA, Thompson PM, Jahanshad N, Alzheimer’s Disease Neuroimaging Initiative (ADNI) Proceedings. IEEE International Symposium on Biomedical Imaging 26413201 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413201
AUTOMATED MULTI-ATLAS LABELING OF THE FORNIX AND ITS INTEGRITY IN ALZHEIMER'S DISEASE. Jin Y, Shi Y, Zhan L, Thompson PM, Alzheimer’s Disease Neuroimaging Initiative (ADNI) Proceedings. IEEE International Symposium on Biomedical Imaging 26413203 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413203
Detecting Genetic Risk Factors for Alzheimer's Disease in Whole Genome Sequence Data via Lasso Screening. Yang T, Wang J, Sun Q, Hibar DP, Jahanshad N, Liu L, Wang Y, Zhan L, Thompson PM, Ye J Proceedings. IEEE International Symposium on Biomedical Imaging 26413209 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413209
Childhood abuse and deprivation are associated with distinct sex-dependent differences in brain morphology. Everaerd D, Klumpers F, Zwiers M, Guadalupe T, Franke B, van Oostrom I, Schene A, Fernández G, Tendolkar I Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 26576924 Neuropsychopharmacology 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/26576924
Boosting Classification Accuracy of Diffusion MRI Derived Brain Networks for the Subtypes of Mild Cognitive Impairment Using Higher Order Singular Value Decomposition. Zhan L, Liu Y, Zhou J, Ye J, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 26413202 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413202
HERITABILITY OF BRAIN NETWORK TOPOLOGY IN 853 TWINS AND SIBLINGS. Zhan L, Jahanshad N, Faskowitz J, Zhu D, Prasad G, Martin NG, de Zubicaray GI, McMahon KL, Wright MJ, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 26413204 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413204
Medial Demons Registration Localizes The Degree of Genetic Influence Over Subcortical Shape Variability: An N= 1480 Meta-Analysis. Gutman BA, Jahanshad N, Ching CR, Wang Y, Kochunov PV, Nichols TE, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 26413211 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413211
Cannabis use in early adolescence: Evidence of amygdala hypersensitivity to signals of threat. Spechler PA, Orr CA, Chaarani B, Kan KJ, Mackey S, Morton A, Snowe MP, Hudson KE, Althoff RR, Higgins ST, Cattrell A, Flor H, Nees F, Banaschewski T, Bokde ALW, Whelan R, Büchel C, Bromberg U, Conrod P, Frouin V, Papadopoulos D, Gallinat J, Heinz A, Walter H, Ittermann B, Gowland P, Paus T, Poustka L, Martinot JL, Artiges E, Smolka MN, Schumann G, Garavan H, IMAGEN Consortium Developmental cognitive neuroscience 26347227 Dev Cogn Neurosci 2015 Dec https://www.ncbi.nlm.nih.gov/pubmed/26347227
Cortical abnormalities in adults and adolescents with major depression based on brain scans from 20 cohorts worldwide in the ENIGMA Major Depressive Disorder Working Group. Schmaal L, Hibar DP, Sämann PG, Hall GB, Baune BT, Jahanshad N, Cheung JW, van Erp TGM, Bos D, Ikram MA, Vernooij MW, Niessen WJ, Tiemeier H, Hofman A, Wittfeld K, Grabe HJ, Janowitz D, Bülow R, Selonke M, Völzke H, Grotegerd D, Dannlowski U, Arolt V, Opel N, Heindel W, Kugel H, Hoehn D, Czisch M, Couvy-Duchesne B, Rentería ME, Strike LT, Wright MJ, Mills NT, de Zubicaray GI, McMahon KL, Medland SE, Martin NG, Gillespie NA, Goya-Maldonado R, Gruber O, Krämer B, Hatton SN, Lagopoulos J, Hickie IB, Frodl T, Carballedo A, Frey EM, van Velzen LS, Penninx BWJH, van Tol MJ, van der Wee NJ, Davey CG, Harrison BJ, Mwangi B, Cao B, Soares JC, Veer IM, Walter H, Schoepf D, Zurowski B, Konrad C, Schramm E, Normann C, Schnell K, Sacchet MD, Gotlib IH, MacQueen GM, Godlewska BR, Nickson T, McIntosh AM, Papmeyer M, Whalley HC, Hall J, Sussmann JE, Li M, Walter M, Aftanas L, Brack I, Bokhan NA, Thompson PM, Veltman DJ Molecular psychiatry 27137745 Mol Psychiatry 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/27137745
Age, APOE and sex: Triad of risk of Alzheimer's disease. Riedel BC, Thompson PM, Brinton RD The Journal of steroid biochemistry and molecular biology 26969397 J Steroid Biochem Mol Biol 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/26969397
Neuroimaging genomics in psychiatry-a translational approach. Mufford MS, Stein DJ, Dalvie S, Groenewold NA, Thompson PM, Jahanshad N Genome medicine 29179742 Genome Med 2017 Nov 27 https://www.ncbi.nlm.nih.gov/pubmed/29179742
Preterm birth leads to hyper-reactive cognitive control processing and poor white matter organization in adulthood. Olsen A, Dennis EL, Evensen KAI, Husby Hollund IM, Løhaugen GCC, Thompson PM, Brubakk AM, Eikenes L, Håberg AK NeuroImage 29191480 Neuroimage 2018 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/29191480
Cortical and Subcortical Brain Morphometry Differences Between Patients With Autism Spectrum Disorder and Healthy Individuals Across the Lifespan: Results From the ENIGMA ASD Working Group. van Rooij D, Anagnostou E, Arango C, Auzias G, Behrmann M, Busatto GF, Calderoni S, Daly E, Deruelle C, Di Martino A, Dinstein I, Duran FLS, Durston S, Ecker C, Fair D, Fedor J, Fitzgerald J, Freitag CM, Gallagher L, Gori I, Haar S, Hoekstra L, Jahanshad N, Jalbrzikowski M, Janssen J, Lerch J, Luna B, Martinho MM, McGrath J, Muratori F, Murphy CM, Murphy DGM, O'Hearn K, Oranje B, Parellada M, Retico A, Rosa P, Rubia K, Shook D, Taylor M, Thompson PM, Tosetti M, Wallace GL, Zhou F, Buitelaar JK The American journal of psychiatry 29145754 Am J Psychiatry 2018 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/29145754
Asymmetric and Symmetric Unbiased Image Registration: Statistical Assessment of Performance. Yanovsky I, Thompson PM, Osher S, Leow AD Conference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops 29152411 Conf Comput Vis Pattern Recognit Workshops 2008 Jun https://www.ncbi.nlm.nih.gov/pubmed/29152411
Susceptibility of brain atrophy to TRIB3 in Alzheimer's disease, evidence from functional prioritization in imaging genetics. Lorenzi M, Altmann A, Gutman B, Wray S, Arber C, Hibar DP, Jahanshad N, Schott JM, Alexander DC, Thompson PM, Ourselin S, Alzheimer’s Disease Neuroimaging Initiative Proceedings of the National Academy of Sciences of the United States of America 29511103 Proc Natl Acad Sci U S A 2018 Mar 20 https://www.ncbi.nlm.nih.gov/pubmed/29511103
Cognitive genomics: Searching for the genetic roots of neuropsychological functioning. Bearden CE, Glahn DC Neuropsychology 29376674 Neuropsychology 2017 Nov https://www.ncbi.nlm.nih.gov/pubmed/29376674
Variation in a range of mTOR-related genes associates with intracranial volume and intellectual disability. Reijnders MRF, Kousi M, van Woerden GM, Klein M, Bralten J, Mancini GMS, van Essen T, Proietti-Onori M, Smeets EEJ, van Gastel M, Stegmann APA, Stevens SJC, Lelieveld SH, Gilissen C, Pfundt R, Tan PL, Kleefstra T, Franke B, Elgersma Y, Katsanis N, Brunner HG Nature communications 29051493 Nat Commun 2017 Oct 20 https://www.ncbi.nlm.nih.gov/pubmed/29051493
A NETWORK APPROACH TO EXAMINING INJURY SEVERITY IN PEDIATRIC TBI. Dennis EL, Rashid F, Jahanshad N, Babikian T, Mink R, Babbitt C, Johnson J, Giza CC, Asarnow RF, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 29201280 Proc IEEE Int Symp Biomed Imaging 2017 https://www.ncbi.nlm.nih.gov/pubmed/29201280
Graph theoretical approaches towards understanding differences in frontoparietal and default mode networks in Autism. Riedel BC, Jahanshad N, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 29201281 Proc IEEE Int Symp Biomed Imaging 2017 https://www.ncbi.nlm.nih.gov/pubmed/29201281
Neural response to working memory demand predicts neurocognitive deficits in HIV. Cohen RA, Siegel S, Gullett JM, Porges E, Woods AJ, Huang H, Zhu Y, Tashima K, Ding MZ Journal of neurovirology 29280107 J Neurovirol 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/29280107
The Added Value of Diffusion-Weighted MRI-Derived Structural Connectome in Evaluating Mild Cognitive Impairment: A Multi-Cohort Validation1. Wang Q, Guo L, Thompson PM, Jack CR, Dodge H, Zhan L, Zhou J, Alzheimer’s Disease Neuroimaging Initiative and National Alzheimer’s Coordinating Center Journal of Alzheimer's disease : JAD 29865049 J Alzheimers Dis 2018 https://www.ncbi.nlm.nih.gov/pubmed/29865049
A COMPARISON OF NETWORK DEFINITIONS FOR DETECTING SEX DIFFERENCES IN BRAIN CONNECTIVITY USING SUPPORT VECTOR MACHINES. Hafzalla GW, Ragothaman A, Faskowitz J, Jahanshad N, McMahon KL, de Zubicaray GI, Wright MJ, Braskie MN, Prasad G, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 29201283 Proc IEEE Int Symp Biomed Imaging 2017 https://www.ncbi.nlm.nih.gov/pubmed/29201283
Predicting the Naturalistic Course of Major Depressive Disorder Using Clinical and Multimodal Neuroimaging Information: A Multivariate Pattern Recognition Study. Schmaal L, Marquand AF, Rhebergen D, van Tol MJ, Ruhé HG, van der Wee NJ, Veltman DJ, Penninx BW Biological psychiatry 25702259 Biol Psychiatry 2015 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/25702259
Regional hippocampal damage in heart failure. Woo MA, Ogren JA, Abouzeid CM, Macey PM, Sairafian KG, Saharan PS, Thompson PM, Fonarow GC, Hamilton MA, Harper RM, Kumar R European journal of heart failure 25704495 Eur J Heart Fail 2015 May https://www.ncbi.nlm.nih.gov/pubmed/25704495
Cognitive decline preceding the onset of psychosis in patients with 22q11.2 deletion syndrome. Vorstman JA, Breetvelt EJ, Duijff SN, Eliez S, Schneider M, Jalbrzikowski M, Armando M, Vicari S, Shashi V, Hooper SR, Chow EW, Fung WL, Butcher NJ, Young DA, McDonald-McGinn DM, Vogels A, van Amelsvoort T, Gothelf D, Weinberger R, Weizman A, Klaassen PW, Koops S, Kates WR, Antshel KM, Simon TJ, Ousley OY, Swillen A, Gur RE, Bearden CE, Kahn RS, Bassett AS, International Consortium on Brain and Behavior in 22q11.2 Deletion Syndrome JAMA psychiatry 25715178 JAMA Psychiatry 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/25715178
Heritability of fractional anisotropy in human white matter: a comparison of Human Connectome Project and ENIGMA-DTI data. Kochunov P, Jahanshad N, Marcus D, Winkler A, Sprooten E, Nichols TE, Wright SN, Hong LE, Patel B, Behrens T, Jbabdi S, Andersson J, Lenglet C, Yacoub E, Moeller S, Auerbach E, Ugurbil K, Sotiropoulos SN, Brouwer RM, Landman B, Lemaitre H, den Braber A, Zwiers MP, Ritchie S, van Hulzen K, Almasy L, Curran J, deZubicaray GI, Duggirala R, Fox P, Martin NG, McMahon KL, Mitchell B, Olvera RL, Peterson C, Starr J, Sussmann J, Wardlaw J, Wright M, Boomsma DI, Kahn R, de Geus EJ, Williamson DE, Hariri A, van 't Ent D, Bastin ME, McIntosh A, Deary IJ, Hulshoff Pol HE, Blangero J, Thompson PM, Glahn DC, Van Essen DC NeuroImage 25747917 Neuroimage 2015 May 1 https://www.ncbi.nlm.nih.gov/pubmed/25747917
Deviant white matter structure in adults with attention-deficit/hyperactivity disorder points to aberrant myelination and affects neuropsychological performance. Onnink AM, Zwiers MP, Hoogman M, Mostert JC, Dammers J, Kan CC, Vasquez AA, Schene AH, Buitelaar J, Franke B Progress in neuro-psychopharmacology & biological psychiatry 25956761 Prog Neuropsychopharmacol Biol Psychiatry 2015 Dec 3 https://www.ncbi.nlm.nih.gov/pubmed/25956761
Cortical thickness and brain volumetric analysis in body dysmorphic disorder. Madsen SK, Zai A, Pirnia T, Arienzo D, Zhan L, Moody TD, Thompson PM, Feusner JD Psychiatry research 25797401 Psychiatry Res 2015 Apr 30 https://www.ncbi.nlm.nih.gov/pubmed/25797401
Perfusion shift from white to gray matter may account for processing speed deficits in schizophrenia. Wright SN, Hong LE, Winkler AM, Chiappelli J, Nugent K, Muellerklein F, Du X, Rowland LM, Wang DJ, Kochunov P Human brain mapping 26108347 Hum Brain Mapp 2015 Oct https://www.ncbi.nlm.nih.gov/pubmed/26108347
Callosal Function in Pediatric Traumatic Brain Injury Linked to Disrupted White Matter Integrity. Dennis EL, Ellis MU, Marion SD, Jin Y, Moran L, Olsen A, Kernan C, Babikian T, Mink R, Babbitt C, Johnson J, Giza CC, Thompson PM, Asarnow RF The Journal of neuroscience : the official journal of the Society for Neuroscience 26180196 J Neurosci 2015 Jul 15 https://www.ncbi.nlm.nih.gov/pubmed/26180196
Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium. van Erp TG, Hibar DP, Rasmussen JM, Glahn DC, Pearlson GD, Andreassen OA, Agartz I, Westlye LT, Haukvik UK, Dale AM, Melle I, Hartberg CB, Gruber O, Kraemer B, Zilles D, Donohoe G, Kelly S, McDonald C, Morris DW, Cannon DM, Corvin A, Machielsen MW, Koenders L, de Haan L, Veltman DJ, Satterthwaite TD, Wolf DH, Gur RC, Gur RE, Potkin SG, Mathalon DH, Mueller BA, Preda A, Macciardi F, Ehrlich S, Walton E, Hass J, Calhoun VD, Bockholt HJ, Sponheim SR, Shoemaker JM, van Haren NE, Hulshoff Pol HE, Ophoff RA, Kahn RS, Roiz-Santiañez R, Crespo-Facorro B, Wang L, Alpert KI, Jönsson EG, Dimitrova R, Bois C, Whalley HC, McIntosh AM, Lawrie SM, Hashimoto R, Thompson PM, Turner JA Molecular psychiatry 26283641 Mol Psychiatry 2016 Apr https://www.ncbi.nlm.nih.gov/pubmed/26283641
Edge-Centered DTI Connectivity Analysis: Application to Schizophrenia. Herskovits EH, Hong LE, Kochunov P, Sampath H, Chen R Neuroinformatics 26078102 Neuroinformatics 2015 Oct https://www.ncbi.nlm.nih.gov/pubmed/26078102
Brain Imaging and Neurodevelopment in HIV-uninfected Thai Children Born to HIV-infected Mothers. Jahanshad N, Couture MC, Prasitsuebsai W, Nir TM, Aurpibul L, Thompson PM, Pruksakaew K, Lerdlum S, Visrutaratna P, Catella S, Desai A, Kerr SJ, Puthanakit T, Paul R, Ananworanich J, Valcour VG, SEARCH 012 and PREDICT Study Groups The Pediatric infectious disease journal 26090574 Pediatr Infect Dis J 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/26090574
Shared genetic variance between obesity and white matter integrity in Mexican Americans. Spieker EA, Kochunov P, Rowland LM, Sprooten E, Winkler AM, Olvera RL, Almasy L, Duggirala R, Fox PT, Blangero J, Glahn DC, Curran JE Frontiers in genetics 25763009 Front Genet 2015 https://www.ncbi.nlm.nih.gov/pubmed/25763009
Does MRI scan acceleration affect power to track brain change? Ching CR, Hua X, Hibar DP, Ward CP, Gunter JL, Bernstein MA, Jack CR Jr, Weiner MW, Thompson PM, Alzheimer's Disease Neuroimaging Initiative Neurobiology of aging 25444601 Neurobiol Aging 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/25444601
Higher homocysteine associated with thinner cortical gray matter in 803 participants from the Alzheimer's Disease Neuroimaging Initiative. Madsen SK, Rajagopalan P, Joshi SH, Toga AW, Thompson PM, Alzheimer's Disease Neuroimaging Initiative (ADNI) Neurobiology of aging 25444607 Neurobiol Aging 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/25444607
Abnormalities in cortical gray matter density in borderline personality disorder. Rossi R, Lanfredi M, Pievani M, Boccardi M, Rasser PE, Thompson PM, Cavedo E, Cotelli M, Rosini S, Beneduce R, Bignotti S, Magni LR, Rillosi L, Magnaldi S, Cobelli M, Rossi G, Frisoni GB European psychiatry : the journal of the Association of European Psychiatrists 25561291 Eur Psychiatry 2015 Feb https://www.ncbi.nlm.nih.gov/pubmed/25561291
Carriers of a common variant in the dopamine transporter gene have greater dementia risk, cognitive decline, and faster ventricular expansion. Roussotte FF, Gutman BA, Hibar DP, Madsen SK, Narr KL, Thompson PM, Alzheimer's Disease Neuroimaging Initiative (ADNI) Alzheimer's & dementia : the journal of the Alzheimer's Association 25496873 Alzheimers Dement 2015 Oct https://www.ncbi.nlm.nih.gov/pubmed/25496873
Effects of changing from non-accelerated to accelerated MRI for follow-up in brain atrophy measurement. Leung KK, Malone IM, Ourselin S, Gunter JL, Bernstein MA, Thompson PM, Jack CR Jr, Weiner MW, Fox NC, Alzheimer's Disease Neuroimaging Initiative NeuroImage 25481794 Neuroimage 2015 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/25481794
A novel cortical thickness estimation method based on volumetric Laplace-Beltrami operator and heat kernel. Wang G, Zhang X, Su Q, Shi J, Caselli RJ, Wang Y, Alzheimer’s Disease Neuroimaging Initiative Medical image analysis 25700360 Med Image Anal 2015 May https://www.ncbi.nlm.nih.gov/pubmed/25700360
Identifying disordered eating behaviours in adolescents: how do parent and adolescent reports differ by sex and age? Bartholdy S, Allen K, Hodsoll J, O'Daly OG, Campbell IC, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Conrod PJ, Desrivières S, Flor H, Frouin V, Gallinat J, Garavan H, Heinz A, Ittermann B, Martinot JL, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Smolka MN, Mennigen E, Walter H, Whelan R, Schumann G, Schmidt U European child & adolescent psychiatry 28050706 Eur Child Adolesc Psychiatry 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28050706
Diverging white matter trajectories in children after traumatic brain injury: The RAPBI study. Dennis EL, Rashid F, Ellis MU, Babikian T, Vlasova RM, Villalon-Reina JE, Jin Y, Olsen A, Mink R, Babbitt C, Johnson J, Giza CC, Thompson PM, Asarnow RF Neurology 28298549 Neurology 2017 Apr 11 https://www.ncbi.nlm.nih.gov/pubmed/28298549
Heritability of Hippocampal Formation Sub-region Volumes. Greenspan KS, Arakelian CR, van Erp TGM Journal of neurology and neuroscience 28503392 J Neurol Neurosci 2016 https://www.ncbi.nlm.nih.gov/pubmed/28503392
Effect of tobacco smoking on frontal cortical thickness development: A longitudinal study in a mixed cohort of ADHD-affected and -unaffected youth. Akkermans SEA, van Rooij D, Rommelse N, Hartman CA, Hoekstra PJ, Franke B, Mennes M, Buitelaar JK European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology 28764867 Eur Neuropsychopharmacol 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/28764867
Association of White Matter With Core Cognitive Deficits in Patients With Schizophrenia. Kochunov P, Coyle TR, Rowland LM, Jahanshad N, Thompson PM, Kelly S, Du X, Sampath H, Bruce H, Chiappelli J, Ryan M, Fisseha F, Savransky A, Adhikari B, Chen S, Paciga SA, Whelan CD, Xie Z, Hyde CL, Chen X, Schubert CR, O'Donnell P, Hong LE JAMA psychiatry 28768312 JAMA Psychiatry 2017 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/28768312
Attention-Deficit/Hyperactivity Disorder symptoms coincide with altered striatal connectivity. Oldehinkel M, Beckmann CF, Pruim RH, van Oort ES, Franke B, Hartman CA, Hoekstra PJ, Oosterlaan J, Heslenfeld D, Buitelaar JK, Mennes M Biological psychiatry. Cognitive neuroscience and neuroimaging 27812554 Biol Psychiatry Cogn Neurosci Neuroimaging 2016 Jul https://www.ncbi.nlm.nih.gov/pubmed/27812554
Separate neural systems for behavioral change and for emotional responses to failure during behavioral inhibition. Deng W, Rolls ET, Ji X, Robbins TW, Banaschewski T, Bokde ALW, Bromberg U, Buechel C, Desrivières S, Conrod P, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Lemaitre H, Nees F, Papadopoulos Orfanos D, Poustka L, Smolka MN, Walter H, Whelan R, Schumann G, Feng J Human brain mapping 28429498 Hum Brain Mapp 2017 Jul https://www.ncbi.nlm.nih.gov/pubmed/28429498
Mapping 22q11.2 Gene Dosage Effects on Brain Morphometry. Lin A, Ching CRK, Vajdi A, Sun D, Jonas RK, Jalbrzikowski M, Kushan-Wells L, Pacheco Hansen L, Krikorian E, Gutman B, Dokoru D, Helleman G, Thompson PM, Bearden CE The Journal of neuroscience : the official journal of the Society for Neuroscience 28536274 J Neurosci 2017 Jun 28 https://www.ncbi.nlm.nih.gov/pubmed/28536274
EFhd2/Swiprosin-1 is a common genetic determinator for sensation-seeking/low anxiety and alcohol addiction. Mielenz D, Reichel M, Jia T, Quinlan EB, Stöckl T, Mettang M, Zilske D, Kirmizi-Alsan E, Schönberger P, Praetner M, Huber SE, Amato D, Schwarz M, Purohit P, Brachs S, Spranger J, Hess A, Büttner C, Ekici AB, Perez-Branguli F, Winner B, Rauschenberger V, Banaschewski T, Bokde ALW, Büchel C, Conrod PJ, Desrivières S, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Martinot JL, Lemaitre H, Nees F, Paus T, Smolka MN, IMAGEN Consortium, Schambony A, Bäuerle T, Eulenburg V, Alzheimer C, Lourdusamy A, Schumann G, Müller CP Molecular psychiatry 28397836 Mol Psychiatry 2018 May https://www.ncbi.nlm.nih.gov/pubmed/28397836
Female-specific association of NOS1 genotype with white matter microstructure in ADHD patients and controls. van Ewijk H, Bralten J, van Duin EDA, Hakobjan M, Buitelaar JK, Heslenfeld DJ, Hoekstra PJ, Hartman C, Hoogman M, Oosterlaan J, Franke B Journal of child psychology and psychiatry, and allied disciplines 28589541 J Child Psychol Psychiatry 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/28589541
The C677T variant in MTHFR modulates associations between brain integrity, mood, and cognitive functioning in old age. Roussotte FF, Hua X, Narr KL, Small GW, Thompson PM, Alzheimer's Disease Neuroimaging Initiative Biological psychiatry. Cognitive neuroscience and neuroimaging 28435933 Biol Psychiatry Cogn Neurosci Neuroimaging 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/28435933
Cortical abnormalities in bipolar disorder: an MRI analysis of 6503 individuals from the ENIGMA Bipolar Disorder Working Group. Hibar DP, Westlye LT, Doan NT, Jahanshad N, Cheung JW, Ching CRK, Versace A, Bilderbeck AC, Uhlmann A, Mwangi B, Krämer B, Overs B, Hartberg CB, Abé C, Dima D, Grotegerd D, Sprooten E, Bøen E, Jimenez E, Howells FM, Delvecchio G, Temmingh H, Starke J, Almeida JRC, Goikolea JM, Houenou J, Beard LM, Rauer L, Abramovic L, Bonnin M, Ponteduro MF, Keil M, Rive MM, Yao N, Yalin N, Najt P, Rosa PG, Redlich R, Trost S, Hagenaars S, Fears SC, Alonso-Lana S, van Erp TGM, Nickson T, Chaim-Avancini TM, Meier TB, Elvsåshagen T, Haukvik UK, Lee WH, Schene AH, Lloyd AJ, Young AH, Nugent A, Dale AM, Pfennig A, McIntosh AM, Lafer B, Baune BT, Ekman CJ, Zarate CA, Bearden CE, Henry C, Simhandl C, McDonald C, Bourne C, Stein DJ, Wolf DH, Cannon DM, Glahn DC, Veltman DJ, Pomarol-Clotet E, Vieta E, Canales-Rodriguez EJ, Nery FG, Duran FLS, Busatto GF, Roberts G, Pearlson GD, Goodwin GM, Kugel H, Whalley HC, Ruhe HG, Soares JC, Fullerton JM, Rybakowski JK, Savitz J, Chaim KT, Fatjó-Vilas M, Soeiro-de-Souza MG, Boks MP, Zanetti MV, Otaduy MCG, Schaufelberger MS, Alda M, Ingvar M, Phillips ML, Kempton MJ, Bauer M, Landén M, Lawrence NS, van Haren NEM, Horn NR, Freimer NB, Gruber O, Schofield PR, Mitchell PB, Kahn RS, Lenroot R, Machado-Vieira R, Ophoff RA, Sarró S, Frangou S, Satterthwaite TD, Hajek T, Dannlowski U, Malt UF, Arolt V, Gattaz WF, Drevets WC, Caseras X, Agartz I, Thompson PM, Andreassen OA Molecular psychiatry 28461699 Mol Psychiatry 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/28461699
The significance of negative correlations in brain connectivity. Zhan L, Jenkins LM, Wolfson OE, GadElkarim JJ, Nocito K, Thompson PM, Ajilore OA, Chung MK, Leow AD The Journal of comparative neurology 28675490 J Comp Neurol 2017 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/28675490
Refinement by integration: aggregated effects of multimodal imaging markers on adult ADHD. Wolfers T, Arenas AL, Onnink AMH, Dammers J, Hoogman M, Zwiers MP, Buitelaar JK, Franke B, Marquand AF, Beckmann CF Journal of psychiatry & neuroscience : JPN 28832320 J Psychiatry Neurosci 2017 Nov https://www.ncbi.nlm.nih.gov/pubmed/28832320
Novel genetic loci underlying human intracranial volume identified through genome-wide association. Adams HH, Hibar DP, Chouraki V, Stein JL, Nyquist PA, Rentería ME, Trompet S, Arias-Vasquez A, Seshadri S, Desrivières S, Beecham AH, Jahanshad N, Wittfeld K, Van der Lee SJ, Abramovic L, Alhusaini S, Amin N, Andersson M, Arfanakis K, Aribisala BS, Armstrong NJ, Athanasiu L, Axelsson T, Beiser A, Bernard M, Bis JC, Blanken LM, Blanton SH, Bohlken MM, Boks MP, Bralten J, Brickman AM, Carmichael O, Chakravarty MM, Chauhan G, Chen Q, Ching CR, Cuellar-Partida G, Braber AD, Doan NT, Ehrlich S, Filippi I, Ge T, Giddaluru S, Goldman AL, Gottesman RF, Greven CU, Grimm O, Griswold ME, Guadalupe T, Hass J, Haukvik UK, Hilal S, Hofer E, Hoehn D, Holmes AJ, Hoogman M, Janowitz D, Jia T, Kasperaviciute D, Kim S, Klein M, Kraemer B, Lee PH, Liao J, Liewald DC, Lopez LM, Luciano M, Macare C, Marquand A, Matarin M, Mather KA, Mattheisen M, Mazoyer B, McKay DR, McWhirter R, Milaneschi Y, Mirza-Schreiber N, Muetzel RL, Maniega SM, Nho K, Nugent AC, Loohuis LM, Oosterlaan J, Papmeyer M, Pappa I, Pirpamer L, Pudas S, Pütz B, Rajan KB, Ramasamy A, Richards JS, Risacher SL, Roiz-Santiañez R, Rommelse N, Rose EJ, Royle NA, Rundek T, Sämann PG, Satizabal CL, Schmaal L, Schork AJ, Shen L, Shin J, Shumskaya E, Smith AV, Sprooten E, Strike LT, Teumer A, Thomson R, Tordesillas-Gutierrez D, Toro R, Trabzuni D, Vaidya D, Van der Grond J, Van der Meer D, Van Donkelaar MM, Van Eijk KR, Van Erp TG, Van Rooij D, Walton E, Westlye LT, Whelan CD, Windham BG, Winkler AM, Woldehawariat G, Wolf C, Wolfers T, Xu B, Yanek LR, Yang J, Zijdenbos A, Zwiers MP, Agartz I, Aggarwal NT, Almasy L, Ames D, Amouyel P, Andreassen OA, Arepalli S, Assareh AA, Barral S, Bastin ME, Becker DM, Becker JT, Bennett DA, Blangero J, van Bokhoven H, Boomsma DI, Brodaty H, Brouwer RM, Brunner HG, Buckner RL, Buitelaar JK, Bulayeva KB, Cahn W, Calhoun VD, Cannon DM, Cavalleri GL, Chen C, Cheng CY, Cichon S, Cookson MR, Corvin A, Crespo-Facorro B, Curran JE, Czisch M, Dale AM, Davies GE, De Geus EJ, De Jager PL, de Zubicaray GI, Delanty N, Depondt C, DeStefano AL, Dillman A, Djurovic S, Donohoe G, Drevets WC, Duggirala R, Dyer TD, Erk S, Espeseth T, Evans DA, Fedko IO, Fernández G, Ferrucci L, Fisher SE, Fleischman DA, Ford I, Foroud TM, Fox PT, Francks C, Fukunaga M, Gibbs JR, Glahn DC, Gollub RL, Göring HH, Grabe HJ, Green RC, Gruber O, Gudnason V, Guelfi S, Hansell NK, Hardy J, Hartman CA, Hashimoto R, Hegenscheid K, Heinz A, Le Hellard S, Hernandez DG, Heslenfeld DJ, Ho BC, Hoekstra PJ, Hoffmann W, Hofman A, Holsboer F, Homuth G, Hosten N, Hottenga JJ, Hulshoff Pol HE, Ikeda M, Ikram MK, Jack CR Jr, Jenkinson M, Johnson R, Jönsson EG, Jukema JW, Kahn RS, Kanai R, Kloszewska I, Knopman DS, Kochunov P, Kwok JB, Lawrie SM, Lemaître H, Liu X, Longo DL, Longstreth WT Jr, Lopez OL, Lovestone S, Martinez O, Martinot JL, Mattay VS, McDonald C, McIntosh AM, McMahon KL, McMahon FJ, Mecocci P, Melle I, Meyer-Lindenberg A, Mohnke S, Montgomery GW, Morris DW, Mosley TH, Mühleisen TW, Müller-Myhsok B, Nalls MA, Nauck M, Nichols TE, Niessen WJ, Nöthen MM, Nyberg L, Ohi K, Olvera RL, Ophoff RA, Pandolfo M, Paus T, Pausova Z, Penninx BW, Pike GB, Potkin SG, Psaty BM, Reppermund S, Rietschel M, Roffman JL, Romanczuk-Seiferth N, Rotter JI, Ryten M, Sacco RL, Sachdev PS, Saykin AJ, Schmidt R, Schofield PR, Sigurdsson S, Simmons A, Singleton A, Sisodiya SM, Smith C, Smoller JW, Soininen H, Srikanth V, Steen VM, Stott DJ, Sussmann JE, Thalamuthu A, Tiemeier H, Toga AW, Traynor BJ, Troncoso J, Turner JA, Tzourio C, Uitterlinden AG, Hernández MC, Van der Brug M, Van der Lugt A, Van der Wee NJ, Van Duijn CM, Van Haren NE, Van T Ent D, Van Tol MJ, Vardarajan BN, Veltman DJ, Vernooij MW, Völzke H, Walter H, Wardlaw JM, Wassink TH, Weale ME, Weinberger DR, Weiner MW, Wen W, Westman E, White T, Wong TY, Wright CB, Zielke HR, Zonderman AB, Deary IJ, DeCarli C, Schmidt H, Martin NG, De Craen AJ, Wright MJ, Launer LJ, Schumann G, Fornage M, Franke B, Debette S, Medland SE, Ikram MA, Thompson PM Nature neuroscience 27694991 Nat Neurosci 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/27694991
Exome chip analyses in adult attention deficit hyperactivity disorder. Zayats T, Jacobsen KK, Kleppe R, Jacob CP, Kittel-Schneider S, Ribasés M, Ramos-Quiroga JA, Richarte V, Casas M, Mota NR, Grevet EH, Klein M, Corominas J, Bralten J, Galesloot T, Vasquez AA, Herms S, Forstner AJ, Larsson H, Breen G, Asherson P, Gross-Lesch S, Lesch KP, Cichon S, Gabrielsen MB, Holmen OL, Bau CH, Buitelaar J, Kiemeney L, Faraone SV, Cormand B, Franke B, Reif A, Haavik J, Johansson S Translational psychiatry 27754487 Transl Psychiatry 2016 Oct 18 https://www.ncbi.nlm.nih.gov/pubmed/27754487
3D tract-specific local and global analysis of white matter integrity in Alzheimer's disease. Jin Y, Huang C, Daianu M, Zhan L, Dennis EL, Reid RI, Jack CR Jr, Zhu H, Thompson PM, Alzheimer's Disease Neuroimaging Initiative Human brain mapping 27883250 Hum Brain Mapp 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/27883250
Ruminative brooding is associated with salience network coherence in early pubertal youth. Ordaz SJ, LeMoult J, Colich NL, Prasad G, Pollak M, Popolizio M, Price A, Greicius M, Gotlib IH Social cognitive and affective neuroscience 27633394 Soc Cogn Affect Neurosci 2017 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/27633394
Cognitive profiles and heritability estimates in the Old Order Amish. Kuehner RM, Kochunov P, Nugent KL, Jurius DE, Savransky A, Gaudiot C, Bruce HA, Gold J, Shuldiner AR, Mitchell BD, Hong LE Psychiatric genetics 27105171 Psychiatr Genet 2016 Aug https://www.ncbi.nlm.nih.gov/pubmed/27105171
Identification of Gene Loci That Overlap Between Schizophrenia and Educational Attainment. Le Hellard S, Wang Y, Witoelar A, Zuber V, Bettella F, Hugdahl K, Espeseth T, Steen VM, Melle I, Desikan R, Schork AJ, Thompson WK, Dale AM, Djurovic S, Andreassen OA, Schizophrenia Working Group of the Psychiatric Genomics Consortium Schizophrenia bulletin 27338279 Schizophr Bull 2017 May 1 https://www.ncbi.nlm.nih.gov/pubmed/27338279
Imputing Phenotypes for Genome-wide Association Studies. Hormozdiari F, Kang EY, Bilow M, Ben-David E, Vulpe C, McLachlan S, Lusis AJ, Han B, Eskin E American journal of human genetics 27292110 Am J Hum Genet 2016 Jul 7 https://www.ncbi.nlm.nih.gov/pubmed/27292110
COMT Val158Met Polymorphism and Social Impairment Interactively Affect Attention-Deficit Hyperactivity Symptoms in Healthy Adolescents. Millenet SK, Nees F, Heintz S, Bach C, Frank J, Vollstädt-Klein S, Bokde A, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Fröhner J, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Lemaire H, Martinot JL, Martinot MP, Papadoulos DO, Paus T, Poustka L, Rietschel M, Smolka MN, Walter H, Whelan R, Schumann G, Banaschewski T, Hohmann S Frontiers in genetics 30108607 Front Genet 2018 https://www.ncbi.nlm.nih.gov/pubmed/30108607
Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. Jang M, Patted T, Gil Y, Garijo D, Ratnakar V, Ji J, Wang P, McMahon A, Thompson PM, Jahanshad N CEUR workshop proceedings. 30034319 CEUR Workshop Proc 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/30034319
Symptom dimensions in obsessive-compulsive disorder as predictors of neurobiology and treatment response. Thorsen AL, Kvale G, Hansen B, van den Heuvel OA Current treatment options in psychiatry 30237966 Curr Treat Options Psychiatry 2018 Mar https://www.ncbi.nlm.nih.gov/pubmed/30237966
Smaller hippocampal CA1 subfield volume in posttraumatic stress disorder. Chen LW, Sun D, Davis SL, Haswell CC, Dennis EL, Swanson CA, Whelan CD, Gutman B, Jahanshad N, Iglesias JE, Thompson P, Mid-Atlantic MIRECC Workgroup, Wagner HR, Saemann P, LaBar KS, Morey RA Depression and anxiety 30256497 Depress Anxiety 2018 Nov https://www.ncbi.nlm.nih.gov/pubmed/30256497
Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia. Sønderby IE, Gústafsson Ó, Doan NT, Hibar DP, Martin-Brevet S, Abdellaoui A, Ames D, Amunts K, Andersson M, Armstrong NJ, Bernard M, Blackburn N, Blangero J, Boomsma DI, Bralten J, Brattbak HR, Brodaty H, Brouwer RM, Bülow R, Calhoun V, Caspers S, Cavalleri G, Chen CH, Cichon S, Ciufolini S, Corvin A, Crespo-Facorro B, Curran JE, Dale AM, Dalvie S, Dazzan P, de Geus EJC, de Zubicaray GI, de Zwarte SMC, Delanty N, den Braber A, Desrivières S, Donohoe G, Draganski B, Ehrlich S, Espeseth T, Fisher SE, Franke B, Frouin V, Fukunaga M, Gareau T, Glahn DC, Grabe H, Groenewold NA, Haavik J, Håberg A, Hashimoto R, Hehir-Kwa JY, Heinz A, Hillegers MHJ, Hoffmann P, Holleran L, Hottenga JJ, Hulshoff HE, Ikeda M, Jahanshad N, Jernigan T, Jockwitz C, Johansson S, Jonsdottir GA, Jönsson EG, Kahn R, Kaufmann T, Kelly S, Kikuchi M, Knowles EEM, Kolskår KK, Kwok JB, Hellard SL, Leu C, Liu J, Lundervold AJ, Lundervold A, Martin NG, Mather K, Mathias SR, McCormack M, McMahon KL, McRae A, Milaneschi Y, Moreau C, Morris D, Mothersill D, Mühleisen TW, Murray R, Nordvik JE, Nyberg L, Olde Loohuis LM, Ophoff R, Paus T, Pausova Z, Penninx B, Peralta JM, Pike B, Prieto C, Pudas S, Quinlan E, Quintana DS, Reinbold CS, Marques TR, Reymond A, Richard G, Rodriguez-Herreros B, Roiz-Santiañez R, Rokicki J, Rucker J, Sachdev P, Sanders AM, Sando SB, Schmaal L, Schofield PR, Schork AJ, Schumann G, Shin J, Shumskaya E, Sisodiya S, Steen VM, Stein DJ, Steinberg S, Strike L, Teumer A, Thalamuthu A, Tordesillas-Gutierrez D, Turner J, Ueland T, Uhlmann A, Ulfarsson MO, van 't Ent D, van der Meer D, van Haren NEM, Vaskinn A, Vassos E, Walters GB, Wang Y, Wen W, Whelan CD, Wittfeld K, Wright M, Yamamori H, Zayats T, Agartz I, Westlye LT, Jacquemont S, Djurovic S, Stefánsson H, Stefánsson K, Thompson P, Andreassen OA, 16p11.2 European Consortium, for the ENIGMA-CNV working group Molecular psychiatry 30283035 Mol Psychiatry 2020 Mar https://www.ncbi.nlm.nih.gov/pubmed/30283035
Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease. Tu Y, Wen C, Zhang W, Wu J, Zhang J, Chen K, Caselli RJ, Reiman EM, Reiman EM, Wang Y Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference 30440425 Annu Int Conf IEEE Eng Med Biol Soc 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/30440425
Genomic kinship construction to enhance genetic analyses in the human connectome project data. Kochunov P, Donohue B, Mitchell BD, Ganjgahi H, Adhikari B, Ryan M, Medland SE, Jahanshad N, Thompson PM, Blangero J, Fieremans E, Novikov DS, Marcus D, Van Essen DC, Glahn DC, Elliot Hong L, Nichols TE Human brain mapping 30496643 Hum Brain Mapp 2019 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/30496643
Smaller subcortical volume in Parkinson patients with rapid eye movement sleep behavior disorder. Kamps S, van den Heuvel OA, van der Werf YD, Berendse HW, Weintraub D, Vriend C Brain imaging and behavior 30155787 Brain Imaging Behav 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/30155787
Cross-tissue eQTL enrichment of associations in schizophrenia. Bettella F, Brown AA, Smeland OB, Wang Y, Witoelar A, Buil Demur AA, Thompson WK, Zuber V, Dale AM, Djurovic S, Andreassen OA PloS one 30188921 PLoS One 2018 https://www.ncbi.nlm.nih.gov/pubmed/30188921
A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol. Adhikari BM, Jahanshad N, Shukla D, Turner J, Grotegerd D, Dannlowski U, Kugel H, Engelen J, Dietsche B, Krug A, Kircher T, Fieremans E, Veraart J, Novikov DS, Boedhoe PSW, van der Werf YD, van den Heuvel OA, Ipser J, Uhlmann A, Stein DJ, Dickie E, Voineskos AN, Malhotra AK, Pizzagalli F, Calhoun VD, Waller L, Veer IM, Walter H, Buchanan RW, Glahn DC, Hong LE, Thompson PM, Kochunov P Brain imaging and behavior 30191514 Brain Imaging Behav 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/30191514
Uncovering Biologically Coherent Peripheral Signatures of Health and Risk for Alzheimer's Disease in the Aging Brain. Riedel BC, Daianu M, Ver Steeg G, Mezher A, Salminen LE, Galstyan A, Thompson PM, Alzheimer’s Disease Neuroimaging Initiative Frontiers in aging neuroscience 30555318 Front Aging Neurosci 2018 https://www.ncbi.nlm.nih.gov/pubmed/30555318
The ENIGMA-Epilepsy working group: Mapping disease from large data sets. Sisodiya SM, Whelan CD, Hatton SN, Huynh K, Altmann A, Ryten M, Vezzani A, Caligiuri ME, Labate A, Gambardella A, Ives-Deliperi V, Meletti S, Munsell BC, Bonilha L, Tondelli M, Rebsamen M, Rummel C, Vaudano AE, Wiest R, Balachandra AR, Bargalló N, Bartolini E, Bernasconi A, Bernasconi N, Bernhardt B, Caldairou B, Carr SJA, Cavalleri GL, Cendes F, Concha L, Desmond PM, Domin M, Duncan JS, Focke NK, Guerrini R, Hamandi K, Jackson GD, Jahanshad N, Kälviäinen R, Keller SS, Kochunov P, Kowalczyk MA, Kreilkamp BAK, Kwan P, Lariviere S, Lenge M, Lopez SM, Martin P, Mascalchi M, Moreira JCV, Morita-Sherman ME, Pardoe HR, Pariente JC, Raviteja K, Rocha CS, Rodríguez-Cruces R, Seeck M, Semmelroch MKHG, Sinclair B, Soltanian-Zadeh H, Stein DJ, Striano P, Taylor PN, Thomas RH, Thomopoulos SI, Velakoulis D, Vivash L, Weber B, Yasuda CL, Zhang J, Thompson PM, McDonald CR, ENIGMA Consortium Epilepsy Working Group Human brain mapping 32468614 Hum Brain Mapp 2020 May 29 https://www.ncbi.nlm.nih.gov/pubmed/32468614
ENIGMA brain injury: Framework, challenges, and opportunities. Dennis EL, Baron D, Bartnik-Olson B, Caeyenberghs K, Esopenko C, Hillary FG, Kenney K, Koerte IK, Lin AP, Mayer AR, Mondello S, Olsen A, Thompson PM, Tate DF, Wilde EA Human brain mapping 32476212 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32476212
Subcortical Brain Volume, Regional Cortical Thickness, and Cortical Surface Area Across Disorders: Findings From the ENIGMA ADHD, ASD, and OCD Working Groups. Boedhoe PSW, van Rooij D, Hoogman M, Twisk JWR, Schmaal L, Abe Y, Alonso P, Ameis SH, Anikin A, Anticevic A, Arango C, Arnold PD, Asherson P, Assogna F, Auzias G, Banaschewski T, Baranov A, Batistuzzo MC, Baumeister S, Baur-Streubel R, Behrmann M, Bellgrove MA, Benedetti F, Beucke JC, Biederman J, Bollettini I, Bose A, Bralten J, Bramati IE, Brandeis D, Brem S, Brennan BP, Busatto GF, Calderoni S, Calvo A, Calvo R, Castellanos FX, Cercignani M, Chaim-Avancini TM, Chantiluke KC, Cheng Y, Cho KIK, Christakou A, Coghill D, Conzelmann A, Cubillo AI, Dale AM, Dallaspezia S, Daly E, Denys D, Deruelle C, Di Martino A, Dinstein I, Doyle AE, Durston S, Earl EA, Ecker C, Ehrlich S, Ely BA, Epstein JN, Ethofer T, Fair DA, Fallgatter AJ, Faraone SV, Fedor J, Feng X, Feusner JD, Fitzgerald J, Fitzgerald KD, Fouche JP, Freitag CM, Fridgeirsson EA, Frodl T, Gabel MC, Gallagher L, Gogberashvili T, Gori I, Gruner P, Gürsel DA, Haar S, Haavik J, Hall GB, Harrison NA, Hartman CA, Heslenfeld DJ, Hirano Y, Hoekstra PJ, Hoexter MQ, Hohmann S, Høvik MF, Hu H, Huyser C, Jahanshad N, Jalbrzikowski M, James A, Janssen J, Jaspers-Fayer F, Jernigan TL, Kapilushniy D, Kardatzki B, Karkashadze G, Kathmann N, Kaufmann C, Kelly C, Khadka S, King JA, Koch K, Kohls G, Konrad K, Kuno M, Kuntsi J, Kvale G, Kwon JS, Lázaro L, Lera-Miguel S, Lesch KP, Hoekstra L, Liu Y, Lochner C, Louza MR, Luna B, Lundervold AJ, Malpas CB, Marques P, Marsh R, Martínez-Zalacaín I, Mataix-Cols D, Mattos P, McCarthy H, McGrath J, Mehta MA, Menchón JM, Mennes M, Martinho MM, Moreira PS, Morer A, Morgado P, Muratori F, Murphy CM, Murphy DGM, Nakagawa A, Nakamae T, Nakao T, Namazova-Baranova L, Narayanaswamy JC, Nicolau R, Nigg JT, Novotny SE, Nurmi EL, Weiss EO, O'Gorman Tuura RL, O'Hearn K, O'Neill J, Oosterlaan J, Oranje B, Paloyelis Y, Parellada M, Pauli P, Perriello C, Piacentini J, Piras F, Piras F, Plessen KJ, Puig O, Ramos-Quiroga JA, Reddy YCJ, Reif A, Reneman L, Retico A, Rosa PGP, Rubia K, Rus OG, Sakai Y, Schrantee A, Schwarz L, Schweren LJS, Seitz J, Shaw P, Shook D, Silk TJ, Simpson HB, Skokauskas N, Soliva Vila JC, Solovieva A, Soreni N, Soriano-Mas C, Spalletta G, Stern ER, Stevens MC, Stewart SE, Sudre G, Szeszko PR, Tamm L, Taylor MJ, Tolin DF, Tosetti M, Tovar-Moll F, Tsuchiyagaito A, van Erp TGM, van Wingen GA, Vance A, Venkatasubramanian G, Vilarroya O, Vives-Gilabert Y, von Polier GG, Walitza S, Wallace GL, Wang Z, Wolfers T, Yoncheva YN, Yun JY, Zanetti MV, Zhou F, Ziegler GC, Zierhut KC, Zwiers MP, ENIGMA ADHD working group, ENIGMA ASD working group, ENIGMA OCD working group, Thompson PM, Stein DJ, Buitelaar J, Franke B, van den Heuvel OA The American journal of psychiatry 32539527 Am J Psychiatry 2020 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/32539527
The IMAGEN study: a decade of imaging genetics in adolescents. Mascarell Maričić L, Walter H, Rosenthal A, Ripke S, Quinlan EB, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Desrivières S, Flor H, Frouin V, Garavan H, Itterman B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Smolka MN, Fröhner JH, Whelan R, Kaminski J, Schumann G, Heinz A, IMAGEN consortium Molecular psychiatry 32601453 Mol Psychiatry 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/32601453
ENIGMA-anxiety working group: Rationale for and organization of large-scale neuroimaging studies of anxiety disorders. Bas-Hoogendam JM, Groenewold NA, Aghajani M, Freitag GF, Harrewijn A, Hilbert K, Jahanshad N, Thomopoulos SI, Thompson PM, Veltman DJ, Winkler AM, Lueken U, Pine DS, van der Wee NJA, Stein DJ, ENIGMA-Anxiety Working Group Human brain mapping 32618421 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32618421
Cognitive and brain development is independently influenced by socioeconomic status and polygenic scores for educational attainment. Judd N, Sauce B, Wiedenhoeft J, Tromp J, Chaarani B, Schliep A, van Noort B, Penttilä J, Grimmer Y, Insensee C, Becker A, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Garavan H, Klingberg T Proceedings of the National Academy of Sciences of the United States of America 32430323 Proc Natl Acad Sci U S A 2020 Jun 2 https://www.ncbi.nlm.nih.gov/pubmed/32430323
ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries. Thompson PM, Jahanshad N, Ching CRK, Salminen LE, Thomopoulos SI, Bright J, Baune BT, Bertolín S, Bralten J, Bruin WB, Bülow R, Chen J, Chye Y, Dannlowski U, de Kovel CGF, Donohoe G, Eyler LT, Faraone SV, Favre P, Filippi CA, Frodl T, Garijo D, Gil Y, Grabe HJ, Grasby KL, Hajek T, Han LKM, Hatton SN, Hilbert K, Ho TC, Holleran L, Homuth G, Hosten N, Houenou J, Ivanov I, Jia T, Kelly S, Klein M, Kwon JS, Laansma MA, Leerssen J, Lueken U, Nunes A, Neill JO, Opel N, Piras F, Piras F, Postema MC, Pozzi E, Shatokhina N, Soriano-Mas C, Spalletta G, Sun D, Teumer A, Tilot AK, Tozzi L, van der Merwe C, Van Someren EJW, van Wingen GA, Völzke H, Walton E, Wang L, Winkler AM, Wittfeld K, Wright MJ, Yun JY, Zhang G, Zhang-James Y, Adhikari BM, Agartz I, Aghajani M, Aleman A, Althoff RR, Altmann A, Andreassen OA, Baron DA, Bartnik-Olson BL, Marie Bas-Hoogendam J, Baskin-Sommers AR, Bearden CE, Berner LA, Boedhoe PSW, Brouwer RM, Buitelaar JK, Caeyenberghs K, Cecil CAM, Cohen RA, Cole JH, Conrod PJ, De Brito SA, de Zwarte SMC, Dennis EL, Desrivieres S, Dima D, Ehrlich S, Esopenko C, Fairchild G, Fisher SE, Fouche JP, Francks C, Frangou S, Franke B, Garavan HP, Glahn DC, Groenewold NA, Gurholt TP, Gutman BA, Hahn T, Harding IH, Hernaus D, Hibar DP, Hillary FG, Hoogman M, Hulshoff Pol HE, Jalbrzikowski M, Karkashadze GA, Klapwijk ET, Knickmeyer RC, Kochunov P, Koerte IK, Kong XZ, Liew SL, Lin AP, Logue MW, Luders E, Macciardi F, Mackey S, Mayer AR, McDonald CR, McMahon AB, Medland SE, Modinos G, Morey RA, Mueller SC, Mukherjee P, Namazova-Baranova L, Nir TM, Olsen A, Paschou P, Pine DS, Pizzagalli F, Rentería ME, Rohrer JD, Sämann PG, Schmaal L, Schumann G, Shiroishi MS, Sisodiya SM, Smit DJA, Sønderby IE, Stein DJ, Stein JL, Tahmasian M, Tate DF, Turner JA, van den Heuvel OA, van der Wee NJA, van der Werf YD, van Erp TGM, van Haren NEM, van Rooij D, van Velzen LS, Veer IM, Veltman DJ, Villalon-Reina JE, Walter H, Whelan CD, Wilde EA, Zarei M, Zelman V, ENIGMA Consortium Translational psychiatry 32198361 Transl Psychiatry 2020 Mar 20 https://www.ncbi.nlm.nih.gov/pubmed/32198361
Subcortical shape alterations in major depressive disorder: Findings from the ENIGMA major depressive disorder working group. Ho TC, Gutman B, Pozzi E, Grabe HJ, Hosten N, Wittfeld K, Völzke H, Baune B, Dannlowski U, Förster K, Grotegerd D, Redlich R, Jansen A, Kircher T, Krug A, Meinert S, Nenadic I, Opel N, Dinga R, Veltman DJ, Schnell K, Veer I, Walter H, Gotlib IH, Sacchet MD, Aleman A, Groenewold NA, Stein DJ, Li M, Walter M, Ching CRK, Jahanshad N, Ragothaman A, Isaev D, Zavaliangos-Petropulu A, Thompson PM, Sämann PG, Schmaal L Human brain mapping 32198905 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32198905
A Potential Role for the STXBP5-AS1 Gene in Adult ADHD Symptoms. Arias-Vásquez A, Groffen AJ, Spijker S, Ouwens KG, Klein M, Vojinovic D, Galesloot TE, Bralten J, Hottenga JJ, van der Most PJ, Kattenberg VM, Pool R, Nolte IM, Penninx BWJH, Fedko IO, Dolan CV, Nivard MG, den Braber A, van Duijn CM, Hoekstra PJ, Buitelaar JK, Kiemeney LA, Hoogman M, Middeldorp CM, Draisma HHM, Vermeulen SH, Sánchez-Mora C, Ramos-Quiroga JA, Ribasés M, EAGLE-ADHD Consortium, Hartman CA, Kooij JJS, Amin N, Smit AB, Franke B, Boomsma DI Behavior genetics 30659475 Behav Genet 2019 May https://www.ncbi.nlm.nih.gov/pubmed/30659475
Mapping causal pathways from genetics to neuropsychiatric disorders using genome-wide imaging genetics: Current status and future directions. Le BD, Stein JL Psychiatry and clinical neurosciences 30864184 Psychiatry Clin Neurosci 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/30864184
The empirical replicability of task-based fMRI as a function of sample size. Bossier H, Roels SP, Seurinck R, Banaschewski T, Barker GJ, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Artiges E, Nees F, Orfanos DP, Poustka L, Fröhner Dipl-Psych JH, Smolka MN, Walter H, Whelan R, Schumann G, Moerkerke B, IMAGEN Consortium NeuroImage 32036019 Neuroimage 2020 May 15 https://www.ncbi.nlm.nih.gov/pubmed/32036019
The genetic architecture of the human cerebral cortex. Grasby KL, Jahanshad N, Painter JN, Colodro-Conde L, Bralten J, Hibar DP, Lind PA, Pizzagalli F, Ching CRK, McMahon MAB, Shatokhina N, Zsembik LCP, Thomopoulos SI, Zhu AH, Strike LT, Agartz I, Alhusaini S, Almeida MAA, Alnæs D, Amlien IK, Andersson M, Ard T, Armstrong NJ, Ashley-Koch A, Atkins JR, Bernard M, Brouwer RM, Buimer EEL, Bülow R, Bürger C, Cannon DM, Chakravarty M, Chen Q, Cheung JW, Couvy-Duchesne B, Dale AM, Dalvie S, de Araujo TK, de Zubicaray GI, de Zwarte SMC, den Braber A, Doan NT, Dohm K, Ehrlich S, Engelbrecht HR, Erk S, Fan CC, Fedko IO, Foley SF, Ford JM, Fukunaga M, Garrett ME, Ge T, Giddaluru S, Goldman AL, Green MJ, Groenewold NA, Grotegerd D, Gurholt TP, Gutman BA, Hansell NK, Harris MA, Harrison MB, Haswell CC, Hauser M, Herms S, Heslenfeld DJ, Ho NF, Hoehn D, Hoffmann P, Holleran L, Hoogman M, Hottenga JJ, Ikeda M, Janowitz D, Jansen IE, Jia T, Jockwitz C, Kanai R, Karama S, Kasperaviciute D, Kaufmann T, Kelly S, Kikuchi M, Klein M, Knapp M, Knodt AR, Krämer B, Lam M, Lancaster TM, Lee PH, Lett TA, Lewis LB, Lopes-Cendes I, Luciano M, Macciardi F, Marquand AF, Mathias SR, Melzer TR, Milaneschi Y, Mirza-Schreiber N, Moreira JCV, Mühleisen TW, Müller-Myhsok B, Najt P, Nakahara S, Nho K, Olde Loohuis LM, Orfanos DP, Pearson JF, Pitcher TL, Pütz B, Quidé Y, Ragothaman A, Rashid FM, Reay WR, Redlich R, Reinbold CS, Repple J, Richard G, Riedel BC, Risacher SL, Rocha CS, Mota NR, Salminen L, Saremi A, Saykin AJ, Schlag F, Schmaal L, Schofield PR, Secolin R, Shapland CY, Shen L, Shin J, Shumskaya E, Sønderby IE, Sprooten E, Tansey KE, Teumer A, Thalamuthu A, Tordesillas-Gutiérrez D, Turner JA, Uhlmann A, Vallerga CL, van der Meer D, van Donkelaar MMJ, van Eijk L, van Erp TGM, van Haren NEM, van Rooij D, van Tol MJ, Veldink JH, Verhoef E, Walton E, Wang M, Wang Y, Wardlaw JM, Wen W, Westlye LT, Whelan CD, Witt SH, Wittfeld K, Wolf C, Wolfers T, Wu JQ, Yasuda CL, Zaremba D, Zhang Z, Zwiers MP, Artiges E, Assareh AA, Ayesa-Arriola R, Belger A, Brandt CL, Brown GG, Cichon S, Curran JE, Davies GE, Degenhardt F, Dennis MF, Dietsche B, Djurovic S, Doherty CP, Espiritu R, Garijo D, Gil Y, Gowland PA, Green RC, Häusler AN, Heindel W, Ho BC, Hoffmann WU, Holsboer F, Homuth G, Hosten N, Jack CR Jr, Jang M, Jansen A, Kimbrel NA, Kolskår K, Koops S, Krug A, Lim KO, Luykx JJ, Mathalon DH, Mather KA, Mattay VS, Matthews S, Mayoral Van Son J, McEwen SC, Melle I, Morris DW, Mueller BA, Nauck M, Nordvik JE, Nöthen MM, O'Leary DS, Opel N, Martinot MP, Pike GB, Preda A, Quinlan EB, Rasser PE, Ratnakar V, Reppermund S, Steen VM, Tooney PA, Torres FR, Veltman DJ, Voyvodic JT, Whelan R, White T, Yamamori H, Adams HHH, Bis JC, Debette S, Decarli C, Fornage M, Gudnason V, Hofer E, Ikram MA, Launer L, Longstreth WT, Lopez OL, Mazoyer B, Mosley TH, Roshchupkin GV, Satizabal CL, Schmidt R, Seshadri S, Yang Q, Alzheimer’s Disease Neuroimaging Initiative, CHARGE Consortium, EPIGEN Consortium, IMAGEN Consortium, SYS Consortium, Parkinson’s Progression Markers Initiative, Alvim MKM, Ames D, Anderson TJ, Andreassen OA, Arias-Vasquez A, Bastin ME, Baune BT, Beckham JC, Blangero J, Boomsma DI, Brodaty H, Brunner HG, Buckner RL, Buitelaar JK, Bustillo JR, Cahn W, Cairns MJ, Calhoun V, Carr VJ, Caseras X, Caspers S, Cavalleri GL, Cendes F, Corvin A, Crespo-Facorro B, Dalrymple-Alford JC, Dannlowski U, de Geus EJC, Deary IJ, Delanty N, Depondt C, Desrivières S, Donohoe G, Espeseth T, Fernández G, Fisher SE, Flor H, Forstner AJ, Francks C, Franke B, Glahn DC, Gollub RL, Grabe HJ, Gruber O, Håberg AK, Hariri AR, Hartman CA, Hashimoto R, Heinz A, Henskens FA, Hillegers MHJ, Hoekstra PJ, Holmes AJ, Hong LE, Hopkins WD, Hulshoff Pol HE, Jernigan TL, Jönsson EG, Kahn RS, Kennedy MA, Kircher TTJ, Kochunov P, Kwok JBJ, Le Hellard S, Loughland CM, Martin NG, Martinot JL, McDonald C, McMahon KL, Meyer-Lindenberg A, Michie PT, Morey RA, Mowry B, Nyberg L, Oosterlaan J, Ophoff RA, Pantelis C, Paus T, Pausova Z, Penninx BWJH, Polderman TJC, Posthuma D, Rietschel M, Roffman JL, Rowland LM, Sachdev PS, Sämann PG, Schall U, Schumann G, Scott RJ, Sim K, Sisodiya SM, Smoller JW, Sommer IE, St Pourcain B, Stein DJ, Toga AW, Trollor JN, Van der Wee NJA, van 't Ent D, Völzke H, Walter H, Weber B, Weinberger DR, Wright MJ, Zhou J, Stein JL, Thompson PM, Medland SE, Enhancing NeuroImaging Genetics through Meta-Analysis Consortium (ENIGMA)—Genetics working group Science (New York, N.Y.) 32193296 Science 2020 Mar 20 https://www.ncbi.nlm.nih.gov/pubmed/32193296
Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group. Jia T, Chu C, Liu Y, van Dongen J, Papastergios E, Armstrong NJ, Bastin ME, Carrillo-Roa T, den Braber A, Harris M, Jansen R, Liu J, Luciano M, Ori APS, Roiz Santiañez R, Ruggeri B, Sarkisyan D, Shin J, Sungeun K, Tordesillas Gutiérrez D, Van't Ent D, Ames D, Artiges E, Bakalkin G, Banaschewski T, Bokde ALW, Brodaty H, Bromberg U, Brouwer R, Büchel C, Burke Quinlan E, Cahn W, de Zubicaray GI, Ehrlich S, Ekström TJ, Flor H, Fröhner JH, Frouin V, Garavan H, Gowland P, Heinz A, Hoare J, Ittermann B, Jahanshad N, Jiang J, Kwok JB, Martin NG, Martinot JL, Mather KA, McMahon KL, McRae AF, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Sämann PG, Schofield PR, Smolka MN, Stein DJ, Strike LT, Teeuw J, Thalamuthu A, Trollor J, Walter H, Wardlaw JM, Wen W, Whelan R, Apostolova LG, Binder EB, Boomsma DI, Calhoun V, Crespo-Facorro B, Deary IJ, Hulshoff Pol H, Ophoff RA, Pausova Z, Sachdev PS, Saykin A, Wright MJ, Thompson PM, Schumann G, Desrivières S Molecular psychiatry 31811260 Mol Psychiatry 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/31811260
Leveraging allelic imbalance to refine fine-mapping for eQTL studies. Zou J, Hormozdiari F, Jew B, Castel SE, Lappalainen T, Ernst J, Sul JH, Eskin E PLoS genetics 31834882 PLoS Genet 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/31834882
Brain aging in major depressive disorder: results from the ENIGMA major depressive disorder working group. Han LKM, Dinga R, Hahn T, Ching CRK, Eyler LT, Aftanas L, Aghajani M, Aleman A, Baune BT, Berger K, Brak I, Filho GB, Carballedo A, Connolly CG, Couvy-Duchesne B, Cullen KR, Dannlowski U, Davey CG, Dima D, Duran FLS, Enneking V, Filimonova E, Frenzel S, Frodl T, Fu CHY, Godlewska BR, Gotlib IH, Grabe HJ, Groenewold NA, Grotegerd D, Gruber O, Hall GB, Harrison BJ, Hatton SN, Hermesdorf M, Hickie IB, Ho TC, Hosten N, Jansen A, Kähler C, Kircher T, Klimes-Dougan B, Krämer B, Krug A, Lagopoulos J, Leenings R, MacMaster FP, MacQueen G, McIntosh A, McLellan Q, McMahon KL, Medland SE, Mueller BA, Mwangi B, Osipov E, Portella MJ, Pozzi E, Reneman L, Repple J, Rosa PGP, Sacchet MD, Sämann PG, Schnell K, Schrantee A, Simulionyte E, Soares JC, Sommer J, Stein DJ, Steinsträter O, Strike LT, Thomopoulos SI, van Tol MJ, Veer IM, Vermeiren RRJM, Walter H, van der Wee NJA, van der Werff SJA, Whalley H, Winter NR, Wittfeld K, Wright MJ, Wu MJ, Völzke H, Yang TT, Zannias V, de Zubicaray GI, Zunta-Soares GB, Abé C, Alda M, Andreassen OA, Bøen E, Bonnin CM, Canales-Rodriguez EJ, Cannon D, Caseras X, Chaim-Avancini TM, Elvsåshagen T, Favre P, Foley SF, Fullerton JM, Goikolea JM, Haarman BCM, Hajek T, Henry C, Houenou J, Howells FM, Ingvar M, Kuplicki R, Lafer B, Landén M, Machado-Vieira R, Malt UF, McDonald C, Mitchell PB, Nabulsi L, Otaduy MCG, Overs BJ, Polosan M, Pomarol-Clotet E, Radua J, Rive MM, Roberts G, Ruhe HG, Salvador R, Sarró S, Satterthwaite TD, Savitz J, Schene AH, Schofield PR, Serpa MH, Sim K, Soeiro-de-Souza MG, Sutherland AN, Temmingh HS, Timmons GM, Uhlmann A, Vieta E, Wolf DH, Zanetti MV, Jahanshad N, Thompson PM, Veltman DJ, Penninx BWJH, Marquand AF, Cole JH, Schmaal L Molecular psychiatry 32424236 Mol Psychiatry 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/32424236
Psychological morbidities and fatigue in patients with confirmed COVID-19 during disease outbreak: prevalence and associated biopsychosocial risk factors. Qi R, Chen W, Liu S, Thompson PM, Zhang LJ, Xia F, Cheng F, Hong A, Surento W, Luo S, Sun ZY, Zhou CS, Li L, Jiang X, Lu GM medRxiv : the preprint server for health sciences 32511502 medRxiv 2020 May 11 https://www.ncbi.nlm.nih.gov/pubmed/32511502
Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities. Armstrong NJ, Mather KA, Sargurupremraj M, Knol MJ, Malik R, Satizabal CL, Yanek LR, Wen W, Gudnason VG, Dueker ND, Elliott LT, Hofer E, Bis J, Jahanshad N, Li S, Logue MA, Luciano M, Scholz M, Smith AV, Trompet S, Vojinovic D, Xia R, Alfaro-Almagro F, Ames D, Amin N, Amouyel P, Beiser AS, Brodaty H, Deary IJ, Fennema-Notestine C, Gampawar PG, Gottesman R, Griffanti L, Jack CR Jr, Jenkinson M, Jiang J, Kral BG, Kwok JB, Lampe L, C M Liewald D, Maillard P, Marchini J, Bastin ME, Mazoyer B, Pirpamer L, Rafael Romero J, Roshchupkin GV, Schofield PR, Schroeter ML, Stott DJ, Thalamuthu A, Trollor J, Tzourio C, van der Grond J, Vernooij MW, Witte VA, Wright MJ, Yang Q, Morris Z, Siggurdsson S, Psaty B, Villringer A, Schmidt H, Haberg AK, van Duijn CM, Jukema JW, Dichgans M, Sacco RL, Wright CB, Kremen WS, Becker LC, Thompson PM, Mosley TH, Wardlaw JM, Ikram MA, Adams HHH, Seshadri S, Sachdev PS, Smith SM, Launer L, Longstreth W, DeCarli C, Schmidt R, Fornage M, Debette S, Nyquist PA Stroke 32517579 Stroke 2020 Jul https://www.ncbi.nlm.nih.gov/pubmed/32517579
Optimizing Connectivity-Driven Brain Parcellation Using Ensemble Clustering. Kurmukov A, Mussabaeva A, Denisova Y, Moyer D, Jahanshad N, Thompson PM, Gutman BA Brain connectivity 32264696 Brain Connect 2020 May https://www.ncbi.nlm.nih.gov/pubmed/32264696
Investigating genetic links between grapheme-colour synaesthesia and neuropsychiatric traits. Tilot AK, Vino A, Kucera KS, Carmichael DA, van den Heuvel L, den Hoed J, Sidoroff-Dorso AV, Campbell A, Porteous DJ, St Pourcain B, van Leeuwen TM, Ward J, Rouw R, Simner J, Fisher SE Philosophical transactions of the Royal Society of London. Series B, Biological sciences 31630655 Philos Trans R Soc Lond B Biol Sci 2019 Dec 9 https://www.ncbi.nlm.nih.gov/pubmed/31630655
Cannabis-Associated Psychotic-like Experiences Are Mediated by Developmental Changes in the Parahippocampal Gyrus. Yu T, Jia T, Zhu L, Desrivières S, Macare C, Bi Y, Bokde ALW, Quinlan EB, Heinz A, Ittermann B, Liu C, Ji L, Banaschewski T, Ren D, Du L, Hou B, Flor H, Frouin V, Garavan H, Gowland P, Martinot JL, Paillère Martinot ML, Nees F, Orfanos DP, Luo Q, Chu C, Paus T, Poustka L, Hohmann S, Millenet S, Smolka MN, Vetter NC, Mennigen E, Lei C, Walter H, Fröhner JH, Whelan R, He G, He L, Schumann G, Robert G, IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 31326579 J Am Acad Child Adolesc Psychiatry 2020 May https://www.ncbi.nlm.nih.gov/pubmed/31326579
Widespread white matter microstructural abnormalities in bipolar disorder: evidence from mega- and meta-analyses across 3033 individuals. Favre P, Pauling M, Stout J, Hozer F, Sarrazin S, Abé C, Alda M, Alloza C, Alonso-Lana S, Andreassen OA, Baune BT, Benedetti F, Busatto GF, Canales-Rodríguez EJ, Caseras X, Chaim-Avancini TM, Ching CRK, Dannlowski U, Deppe M, Eyler LT, Fatjo-Vilas M, Foley SF, Grotegerd D, Hajek T, Haukvik UK, Howells FM, Jahanshad N, Kugel H, Lagerberg TV, Lawrie SM, Linke JO, McIntosh A, Melloni EMT, Mitchell PB, Polosan M, Pomarol-Clotet E, Repple J, Roberts G, Roos A, Rosa PGP, Salvador R, Sarró S, Schofield PR, Serpa MH, Sim K, Stein DJ, Sussmann JE, Temmingh HS, Thompson PM, Verdolini N, Vieta E, Wessa M, Whalley HC, Zanetti MV, Leboyer M, Mangin JF, Henry C, Duchesnay E, Houenou J, ENIGMA Bipolar Disorder Working Group Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 31434102 Neuropsychopharmacology 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/31434102
White Matter in Schizophrenia Treatment Resistance. Kochunov P, Huang J, Chen S, Li Y, Tan S, Fan F, Feng W, Wang Y, Rowland LM, Savransky A, Du X, Chiappelli J, Chen S, Jahanshad N, Thompson PM, Ryan MC, Adhikari B, Sampath H, Cui Y, Wang Z, Yang F, Tan Y, Hong LE The American journal of psychiatry 31352812 Am J Psychiatry 2019 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/31352812
Association of Gray Matter and Personality Development With Increased Drunkenness Frequency During Adolescence. Robert GH, Luo Q, Yu T, Chu C, Ing A, Jia T, Papadopoulos Orfanos D, Burke-Quinlan E, Desrivières S, Ruggeri B, Spechler P, Chaarani B, Tay N, Banaschewski T, Bokde ALW, Bromberg U, Flor H, Frouin V, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Nees F, Poustka L, Smolka MN, Vetter NC, Walter H, Whelan R, Conrod P, Barker T, Garavan H, Schumann G, IMAGEN Consortium JAMA psychiatry 31851304 JAMA Psychiatry 2020 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/31851304
Behavioral problems in perinatally HIV-infected young children with early antiretroviral therapy and HIV-exposed uninfected young children: prevalence and associated factors. Jantarabenjakul W, Chonchaiya W, Puthanakit T, Anugulruengkitt S, Theerawit T, Payapanon J, Sophonphan J, Veeravigrom M, Jahanshad N, Thompson PM, Ananworanich J, Malee K, Pancharoen C, DOET study AIDS care 31635484 AIDS Care 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/31635484
Association of Genetic and Phenotypic Assessments With Onset of Disordered Eating Behaviors and Comorbid Mental Health Problems Among Adolescents. Robinson L, Zhang Z, Jia T, Bobou M, Roach A, Campbell I, Irish M, Quinlan EB, Tay N, Barker ED, Banaschewski T, Bokde ALW, Grigis A, Garavan H, Heinz A, Ittermann B, Martinot JL, Stringaris A, Penttilä J, van Noort B, Grimmer Y, Martinot MP, Insensee C, Becker A, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Schmidt U, Desrivières S, IMAGEN Consortium JAMA network open 33263759 JAMA Netw Open 2020 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/33263759
Network-based atrophy modeling in the common epilepsies: A worldwide ENIGMA study. Larivière S, Rodríguez-Cruces R, Royer J, Caligiuri ME, Gambardella A, Concha L, Keller SS, Cendes F, Yasuda C, Bonilha L, Gleichgerrcht E, Focke NK, Domin M, von Podewills F, Langner S, Rummel C, Wiest R, Martin P, Kotikalapudi R, O'Brien TJ, Sinclair B, Vivash L, Desmond PM, Alhusaini S, Doherty CP, Cavalleri GL, Delanty N, Kälviäinen R, Jackson GD, Kowalczyk M, Mascalchi M, Semmelroch M, Thomas RH, Soltanian-Zadeh H, Davoodi-Bojd E, Zhang J, Lenge M, Guerrini R, Bartolini E, Hamandi K, Foley S, Weber B, Depondt C, Absil J, Carr SJA, Abela E, Richardson MP, Devinsky O, Severino M, Striano P, Tortora D, Hatton SN, Vos SB, Duncan JS, Whelan CD, Thompson PM, Sisodiya SM, Bernasconi A, Labate A, McDonald CR, Bernasconi N, Bernhardt BC Science advances 33208365 Sci Adv 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/33208365
The clinical utility of proton magnetic resonance spectroscopy in traumatic brain injury: recommendations from the ENIGMA MRS working group. Bartnik-Olson BL, Alger JR, Babikian T, Harris AD, Holshouser B, Kirov II, Maudsley AA, Thompson PM, Dennis EL, Tate DF, Wilde EA, Lin A Brain imaging and behavior 32797399 Brain Imaging Behav 2021 Apr https://www.ncbi.nlm.nih.gov/pubmed/32797399
Intelligence, educational attainment, and brain structure in those at familial high-risk for schizophrenia or bipolar disorder. de Zwarte SMC, Brouwer RM, Agartz I, Alda M, Alonso-Lana S, Bearden CE, Bertolino A, Bonvino A, Bramon E, Buimer EEL, Cahn W, Canales-Rodríguez EJ, Cannon DM, Cannon TD, Caseras X, Castro-Fornieles J, Chen Q, Chung Y, De la Serna E, Del Mar Bonnin C, Demro C, Di Giorgio A, Doucet GE, Eker MC, Erk S, Fatjó-Vilas M, Fears SC, Foley SF, Frangou S, Fullerton JM, Glahn DC, Goghari VM, Goikolea JM, Goldman AL, Gonul AS, Gruber O, Hajek T, Hawkins EL, Heinz A, Hidiroglu Ongun C, Hillegers MHJ, Houenou J, Hulshoff Pol HE, Hultman CM, Ingvar M, Johansson V, Jönsson EG, Kane F, Kempton MJ, Koenis MMG, Kopecek M, Krämer B, Lawrie SM, Lenroot RK, Marcelis M, Mattay VS, McDonald C, Meyer-Lindenberg A, Michielse S, Mitchell PB, Moreno D, Murray RM, Mwangi B, Nabulsi L, Newport J, Olman CA, van Os J, Overs BJ, Ozerdem A, Pergola G, Picchioni MM, Piguet C, Pomarol-Clotet E, Radua J, Ramsay IS, Richter A, Roberts G, Salvador R, Saricicek Aydogan A, Sarró S, Schofield PR, Simsek EM, Simsek F, Soares JC, Sponheim SR, Sugranyes G, Toulopoulou T, Tronchin G, Vieta E, Walter H, Weinberger DR, Whalley HC, Wu MJ, Yalin N, Andreassen OA, Ching CRK, Thomopoulos SI, van Erp TGM, Jahanshad N, Thompson PM, Kahn RS, van Haren NEM Human brain mapping 33027543 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33027543
Greater male than female variability in regional brain structure across the lifespan. Wierenga LM, Doucet GE, Dima D, Agartz I, Aghajani M, Akudjedu TN, Albajes-Eizagirre A, Alnaes D, Alpert KI, Andreassen OA, Anticevic A, Asherson P, Banaschewski T, Bargallo N, Baumeister S, Baur-Streubel R, Bertolino A, Bonvino A, Boomsma DI, Borgwardt S, Bourque J, den Braber A, Brandeis D, Breier A, Brodaty H, Brouwer RM, Buitelaar JK, Busatto GF, Calhoun VD, Canales-Rodríguez EJ, Cannon DM, Caseras X, Castellanos FX, Chaim-Avancini TM, Ching CR, Clark VP, Conrod PJ, Conzelmann A, Crivello F, Davey CG, Dickie EW, Ehrlich S, Van't Ent D, Fisher SE, Fouche JP, Franke B, Fuentes-Claramonte P, de Geus EJ, Di Giorgio A, Glahn DC, Gotlib IH, Grabe HJ, Gruber O, Gruner P, Gur RE, Gur RC, Gurholt TP, de Haan L, Haatveit B, Harrison BJ, Hartman CA, Hatton SN, Heslenfeld DJ, van den Heuvel OA, Hickie IB, Hoekstra PJ, Hohmann S, Holmes AJ, Hoogman M, Hosten N, Howells FM, Hulshoff Pol HE, Huyser C, Jahanshad N, James AC, Jiang J, Jönsson EG, Joska JA, Kalnin AJ, Karolinska Schizophrenia Project (KaSP) Consortium, Klein M, Koenders L, Kolskår KK, Krämer B, Kuntsi J, Lagopoulos J, Lazaro L, Lebedeva IS, Lee PH, Lochner C, Machielsen MW, Maingault S, Martin NG, Martínez-Zalacaín I, Mataix-Cols D, Mazoyer B, McDonald BC, McDonald C, McIntosh AM, McMahon KL, McPhilemy G, van der Meer D, Menchón JM, Naaijen J, Nyberg L, Oosterlaan J, Paloyelis Y, Pauli P, Pergola G, Pomarol-Clotet E, Portella MJ, Radua J, Reif A, Richard G, Roffman JL, Rosa PG, Sacchet MD, Sachdev PS, Salvador R, Sarró S, Satterthwaite TD, Saykin AJ, Serpa MH, Sim K, Simmons A, Smoller JW, Sommer IE, Soriano-Mas C, Stein DJ, Strike LT, Szeszko PR, Temmingh HS, Thomopoulos SI, Tomyshev AS, Trollor JN, Uhlmann A, Veer IM, Veltman DJ, Voineskos A, Völzke H, Walter H, Wang L, Wang Y, Weber B, Wen W, West JD, Westlye LT, Whalley HC, Williams SC, Wittfeld K, Wolf DH, Wright MJ, Yoncheva YN, Zanetti MV, Ziegler GC, de Zubicaray GI, Thompson PM, Crone EA, Frangou S, Tamnes CK Human brain mapping 33044802 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33044802
Predicting alcohol dependence from multi-site brain structural measures. Hahn S, Mackey S, Cousijn J, Foxe JJ, Heinz A, Hester R, Hutchinson K, Kiefer F, Korucuoglu O, Lett T, Li CR, London E, Lorenzetti V, Maartje L, Momenan R, Orr C, Paulus M, Schmaal L, Sinha R, Sjoerds Z, Stein DJ, Stein E, van Holst RJ, Veltman D, Walter H, Wiers RW, Yucel M, Thompson PM, Conrod P, Allgaier N, Garavan H Human brain mapping 33064342 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33064342
Testing a convolutional neural network-based hippocampal segmentation method in a stroke population. Zavaliangos-Petropulu A, Tubi MA, Haddad E, Zhu A, Braskie MN, Jahanshad N, Thompson PM, Liew SL Human brain mapping 33067842 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33067842
Cortical volume abnormalities in posttraumatic stress disorder: an ENIGMA-psychiatric genomics consortium PTSD workgroup mega-analysis. Wang X, Xie H, Chen T, Cotton AS, Salminen LE, Logue MW, Clarke-Rubright EK, Wall J, Dennis EL, O'Leary BM, Abdallah CG, Andrew E, Baugh LA, Bomyea J, Bruce SE, Bryant R, Choi K, Daniels JK, Davenport ND, Davidson RJ, DeBellis M, deRoon-Cassini T, Disner SG, Fani N, Fercho KA, Fitzgerald J, Forster GL, Frijling JL, Geuze E, Gomaa H, Gordon EM, Grupe D, Harpaz-Rotem I, Haswell CC, Herzog JI, Hofmann D, Hollifield M, Hosseini B, Hudson AR, Ipser J, Jahanshad N, Jovanovic T, Kaufman ML, King AP, Koch SBJ, Koerte IK, Korgaonkar MS, Krystal JH, Larson C, Lebois LAM, Levy I, Li G, Magnotta VA, Manthey A, May G, McLaughlin KA, Mueller SC, Nawijn L, Nelson SM, Neria Y, Nitschke JB, Olff M, Olson EA, Peverill M, Phan KL, Rashid FM, Ressler K, Rosso IM, Sambrook K, Schmahl C, Shenton ME, Sierk A, Simons JS, Simons RM, Sponheim SR, Stein MB, Stein DJ, Stevens JS, Straube T, Suarez-Jimenez B, Tamburrino M, Thomopoulos SI, van der Wee NJA, van der Werff SJA, van Erp TGM, van Rooij SJH, van Zuiden M, Varkevisser T, Veltman DJ, Vermeiren RRJM, Walter H, Wang L, Zhu Y, Zhu X, Thompson PM, Morey RA, Liberzon I Molecular psychiatry 33288872 Mol Psychiatry 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/33288872
Decentralized Multisite VBM Analysis During Adolescence Shows Structural Changes Linked to Age, Body Mass Index, and Smoking: a COINSTAC Analysis. Gazula H, Holla B, Zhang Z, Xu J, Verner E, Kelly R, Jain S, Bharath RD, Barker GJ, Basu D, Chakrabarti A, Kalyanram K, Kumaran K, Singh L, Kuriyan R, Murthy P, Benega V, Plis SM, Sarwate AD, Turner JA, Schumann G, Calhoun VD Neuroinformatics 33462781 Neuroinformatics 2021 Oct https://www.ncbi.nlm.nih.gov/pubmed/33462781
Subcortical volumes across the lifespan: Data from 18,605 healthy individuals aged 3-90 years. Dima D, Modabbernia A, Papachristou E, Doucet GE, Agartz I, Aghajani M, Akudjedu TN, Albajes-Eizagirre A, Alnaes D, Alpert KI, Andersson M, Andreasen NC, Andreassen OA, Asherson P, Banaschewski T, Bargallo N, Baumeister S, Baur-Streubel R, Bertolino A, Bonvino A, Boomsma DI, Borgwardt S, Bourque J, Brandeis D, Breier A, Brodaty H, Brouwer RM, Buitelaar JK, Busatto GF, Buckner RL, Calhoun V, Canales-Rodríguez EJ, Cannon DM, Caseras X, Castellanos FX, Cervenka S, Chaim-Avancini TM, Ching CRK, Chubar V, Clark VP, Conrod P, Conzelmann A, Crespo-Facorro B, Crivello F, Crone EA, Dannlowski U, Dale AM, Davey C, de Geus EJC, de Haan L, de Zubicaray GI, den Braber A, Dickie EW, Di Giorgio A, Doan NT, Dørum ES, Ehrlich S, Erk S, Espeseth T, Fatouros-Bergman H, Fisher SE, Fouche JP, Franke B, Frodl T, Fuentes-Claramonte P, Glahn DC, Gotlib IH, Grabe HJ, Grimm O, Groenewold NA, Grotegerd D, Gruber O, Gruner P, Gur RE, Gur RC, Hahn T, Harrison BJ, Hartman CA, Hatton SN, Heinz A, Heslenfeld DJ, Hibar DP, Hickie IB, Ho BC, Hoekstra PJ, Hohmann S, Holmes AJ, Hoogman M, Hosten N, Howells FM, Hulshoff Pol HE, Huyser C, Jahanshad N, James A, Jernigan TL, Jiang J, Jönsson EG, Joska JA, Kahn R, Kalnin A, Kanai R, Klein M, Klyushnik TP, Koenders L, Koops S, Krämer B, Kuntsi J, Lagopoulos J, Lázaro L, Lebedeva I, Lee WH, Lesch KP, Lochner C, Machielsen MWJ, Maingault S, Martin NG, Martínez-Zalacaín I, Mataix-Cols D, Mazoyer B, McDonald C, McDonald BC, McIntosh AM, McMahon KL, McPhilemy G, Meinert S, Menchón JM, Medland SE, Meyer-Lindenberg A, Naaijen J, Najt P, Nakao T, Nordvik JE, Nyberg L, Oosterlaan J, de la Foz VO, Paloyelis Y, Pauli P, Pergola G, Pomarol-Clotet E, Portella MJ, Potkin SG, Radua J, Reif A, Rinker DA, Roffman JL, Rosa PGP, Sacchet MD, Sachdev PS, Salvador R, Sánchez-Juan P, Sarró S, Satterthwaite TD, Saykin AJ, Serpa MH, Schmaal L, Schnell K, Schumann G, Sim K, Smoller JW, Sommer I, Soriano-Mas C, Stein DJ, Strike LT, Swagerman SC, Tamnes CK, Temmingh HS, Thomopoulos SI, Tomyshev AS, Tordesillas-Gutiérrez D, Trollor JN, Turner JA, Uhlmann A, van den Heuvel OA, van den Meer D, van der Wee NJA, van Haren NEM, Van't Ent D, van Erp TGM, Veer IM, Veltman DJ, Voineskos A, Völzke H, Walter H, Walton E, Wang L, Wang Y, Wassink TH, Weber B, Wen W, West JD, Westlye LT, Whalley H, Wierenga LM, Williams SCR, Wittfeld K, Wolf DH, Worker A, Wright MJ, Yang K, Yoncheva Y, Zanetti MV, Ziegler GC, Thompson PM, Frangou S, Karolinska Schizophrenia Project (KaSP) Human brain mapping 33570244 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33570244
Trauma and posttraumatic stress disorder modulate polygenic predictors of hippocampal and amygdala volume. Zheng Y, Garrett ME, Sun D, Clarke-Rubright EK, Haswell CC, Maihofer AX, Elman JA, Franz CE, Lyons MJ, Kremen WS, Peverill M, Sambrook K, McLaughlin KA, Davenport ND, Disner S, Sponheim SR, Andrew E, Korgaonkar M, Bryant R, Varkevisser T, Geuze E, Coleman J, Beckham JC, Kimbrel NA, Sullivan D, Miller M, Hayes J, Verfaellie M, Wolf E, Salat D, Spielberg JM, Milberg W, McGlinchey R, Dennis EL, Thompson PM, Medland S, Jahanshad N, Nievergelt CM, Ashley-Koch AE, Logue MW, Morey RA Translational psychiatry 34916497 Transl Psychiatry 2021 Dec 16 https://www.ncbi.nlm.nih.gov/pubmed/34916497
Dissecting the heterogeneous subcortical brain volume of autism spectrum disorder using community detection. Li T, Hoogman M, Roth Mota N, Buitelaar JK, ENIGMA-ASD working group, Vasquez AA, Franke B, van Rooij D Autism research : official journal of the International Society for Autism Research 34704385 Autism Res 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/34704385
Artificial intelligence for classification of temporal lobe epilepsy with ROI-level MRI data: A worldwide ENIGMA-Epilepsy study. Gleichgerrcht E, Munsell BC, Alhusaini S, Alvim MKM, Bargalló N, Bender B, Bernasconi A, Bernasconi N, Bernhardt B, Blackmon K, Caligiuri ME, Cendes F, Concha L, Desmond PM, Devinsky O, Doherty CP, Domin M, Duncan JS, Focke NK, Gambardella A, Gong B, Guerrini R, Hatton SN, Kälviäinen R, Keller SS, Kochunov P, Kotikalapudi R, Kreilkamp BAK, Labate A, Langner S, Larivière S, Lenge M, Lui E, Martin P, Mascalchi M, Meletti S, O'Brien TJ, Pardoe HR, Pariente JC, Xian Rao J, Richardson MP, Rodríguez-Cruces R, Rüber T, Sinclair B, Soltanian-Zadeh H, Stein DJ, Striano P, Taylor PN, Thomas RH, Elisabetta Vaudano A, Vivash L, von Podewills F, Vos SB, Weber B, Yao Y, Lin Yasuda C, Zhang J, Thompson PM, Sisodiya SM, McDonald CR, Bonilha L, ENIGMA-Epilepsy Working Group NeuroImage. Clinical 34339947 Neuroimage Clin 2021 https://www.ncbi.nlm.nih.gov/pubmed/34339947
The role of maternal BMI on brain food cue reactivity in children: a preliminary study. Luo S, Angelo B, Chow T, Monterosso JR, Xiang AH, Thompson PM, Page KA Brain imaging and behavior 33738669 Brain Imaging Behav 2021 Dec https://www.ncbi.nlm.nih.gov/pubmed/33738669
Reward Processing in Novelty Seekers: A Transdiagnostic Psychiatric Imaging Biomarker. Qi S, Schumann G, Bustillo J, Turner JA, Jiang R, Zhi D, Fu Z, Mayer AR, Vergara VM, Silva RF, Iraji A, Chen J, Damaraju E, Ma X, Yang X, Stevens M, Mathalon DH, Ford JM, Voyvodic J, Mueller BA, Belger A, Potkin SG, Preda A, Zhuo C, Xu Y, Chu C, Banaschewski T, Barker GJ, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Calhoun VD, Sui J, IMAGEN Consortium Biological psychiatry 33875230 Biol Psychiatry 2021 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/33875230
TEMPORALLY ADAPTIVE-DYNAMIC SPARSE NETWORK FOR MODELING DISEASE PROGRESSION. Zhang J, Wang Y Proceedings. IEEE International Symposium on Biomedical Imaging 34012506 Proc IEEE Int Symp Biomed Imaging 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/34012506
Examination of the association between exposure to childhood maltreatment and brain structure in young adults: a machine learning analysis. Price M, Albaugh M, Hahn S, Juliano AC, Fani N, Brier ZMF, Legrand AC, van Stolk-Cooke K, Chaarani B, Potter A, Peck K, Allgaier N, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère ML, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Garavan H Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 33637836 Neuropsychopharmacology 2021 Oct https://www.ncbi.nlm.nih.gov/pubmed/33637836
Neural network involving medial orbitofrontal cortex and dorsal periaqueductal gray regulation in human alcohol abuse. Jia T, Xie C, Banaschewski T, Barker GJ, Bokde ALW, Büchel C, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Robbins TW, Feng J, IMAGEN Consortium Science advances 33536210 Sci Adv 2021 Feb https://www.ncbi.nlm.nih.gov/pubmed/33536210
Multi-Resemblance Multi-Target Low-Rank Coding for Prediction of Cognitive Decline With Longitudinal Brain Images. Zhang J, Wu J, Li Q, Caselli RJ, Thompson PM, Ye J, Wang Y IEEE transactions on medical imaging 33798076 IEEE Trans Med Imaging 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/33798076
Are psychotic-like experiences related to a discontinuation of cannabis consumption in young adults? Daedelow LS, Banaschewski T, Berning M, Bokde ALW, Brühl R, Burke Quinlan E, Curran HV, Desrivières S, Flor H, Grigis A, Garavan H, Hardon A, Kaminski J, Martinot JL, Paillère Martinot ML, Artiges E, Murray H, Nees F, Oei NYL, Papadopoulos Orfanos D, Paus T, Poustka L, Hohmann S, Millenet S, Rosenthal A, Fröhner JH, Smolka MN, Walter H, Whelan R, Wiers RW, Schumann G, Heinz A, ERANID Consortium, IMAGEN Consortium Schizophrenia research 33493775 Schizophr Res 2021 Feb https://www.ncbi.nlm.nih.gov/pubmed/33493775
Concordance of genetic variation that increases risk for tourette syndrome and that influences its underlying neurocircuitry. Mufford M, Cheung J, Jahanshad N, van der Merwe C, Ding L, Groenewold N, Koen N, Chimusa ER, Dalvie S, Ramesar R, Knowles JA, Lochner C, Hibar DP, Paschou P, van den Heuvel OA, Medland SE, Scharf JM, Mathews CA, Thompson PM, Stein DJ, Psychiatric Genomics Consortium - Tourette Syndrome working group Translational psychiatry 30902966 Transl Psychiatry 2019 Mar 22 https://www.ncbi.nlm.nih.gov/pubmed/30902966
Adaptive Identification of Cortical and Subcortical Imaging Markers of Early Life Stress and Posttraumatic Stress Disorder. Salminen LE, Morey RA, Riedel BC, Jahanshad N, Dennis EL, Thompson PM Journal of neuroimaging : official journal of the American Society of Neuroimaging 30714246 J Neuroimaging 2019 May https://www.ncbi.nlm.nih.gov/pubmed/30714246
The joint effect of aging and HIV infection on microstructure of white matter bundles. Kuhn T, Jin Y, Huang C, Kim Y, Nir TM, Gullett JM, Jones JD, Sayegh P, Chung C, Dang BH, Singer EJ, Shattuck DW, Jahanshad N, Bookheimer SY, Hinkin CH, Zhu H, Thompson PM, Thames AD Human brain mapping 31271489 Hum Brain Mapp 2019 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/31271489
Altered white matter microstructure in 22q11.2 deletion syndrome: a multisite diffusion tensor imaging study. Villalón-Reina JE, Martínez K, Qu X, Ching CRK, Nir TM, Kothapalli D, Corbin C, Sun D, Lin A, Forsyth JK, Kushan L, Vajdi A, Jalbrzikowski M, Hansen L, Jonas RK, van Amelsvoort T, Bakker G, Kates WR, Antshel KM, Fremont W, Campbell LE, McCabe KL, Daly E, Gudbrandsen M, Murphy CM, Murphy D, Craig M, Emanuel B, McDonald-McGinn DM, Vorstman JAS, Fiksinski AM, Koops S, Ruparel K, Roalf D, Gur RE, Eric Schmitt J, Simon TJ, Goodrich-Hunsaker NJ, Durdle CA, Doherty JL, Cunningham AC, van den Bree M, Linden DEJ, Owen M, Moss H, Kelly S, Donohoe G, Murphy KC, Arango C, Jahanshad N, Thompson PM, Bearden CE Molecular psychiatry 31358905 Mol Psychiatry 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/31358905
Interactive impact of childhood maltreatment, depression, and age on cortical brain structure: mega-analytic findings from a large multi-site cohort. Tozzi L, Garczarek L, Janowitz D, Stein DJ, Wittfeld K, Dobrowolny H, Lagopoulos J, Hatton SN, Hickie IB, Carballedo A, Brooks SJ, Vuletic D, Uhlmann A, Veer IM, Walter H, Bülow R, Völzke H, Klinger-König J, Schnell K, Schoepf D, Grotegerd D, Opel N, Dannlowski U, Kugel H, Schramm E, Konrad C, Kircher T, Jüksel D, Nenadić I, Krug A, Hahn T, Steinsträter O, Redlich R, Zaremba D, Zurowski B, Fu CHY, Dima D, Cole J, Grabe HJ, Connolly CG, Yang TT, Ho TC, LeWinn KZ, Li M, Groenewold NA, Salminen LE, Walter M, Simmons AN, van Erp TGM, Jahanshad N, Baune BT, van der Wee NJA, van Tol MJ, Penninx BWJH, Hibar DP, Thompson PM, Veltman DJ, Schmaal L, Frodl T, ‘for the ENIGMA-MDD Consortium’ Psychological medicine 31084657 Psychol Med 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/31084657
Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline. Adhikari BM, Jahanshad N, Shukla D, Glahn DC, Blangero J, Fox PT, Reynolds RC, Cox RW, Fieremans E, Veraart J, Novikov DS, Nichols TE, Hong LE, Thompson PM, Kochunov P Human brain mapping 30052318 Hum Brain Mapp 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/30052318
Mapping abnormal subcortical neurodevelopment in a cohort of Thai children with HIV. Wade BSC, Valcour VG, Puthanakit T, Saremi A, Gutman BA, Nir TM, Watson C, Aurpibul L, Kosalaraksa P, Ounchanum P, Kerr S, Dumrongpisutikul N, Visrutaratna P, Srinakarin J, Pothisri M, Narr KL, Thompson PM, Ananworanich J, Paul RH, Jahanshad N, PREDICT and Resilience Study Groups NeuroImage. Clinical 31029050 Neuroimage Clin 2019 https://www.ncbi.nlm.nih.gov/pubmed/31029050
Quantifying performance of machine learning methods for neuroimaging data. Jollans L, Boyle R, Artiges E, Banaschewski T, Desrivières S, Grigis A, Martinot JL, Paus T, Smolka MN, Walter H, Schumann G, Garavan H, Whelan R NeuroImage 31173905 Neuroimage 2019 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/31173905
10Kin1day: A Bottom-Up Neuroimaging Initiative. van den Heuvel MP, Scholtens LH, van der Burgh HK, Agosta F, Alloza C, Arango C, Auyeung B, Baron-Cohen S, Basaia S, Benders MJNL, Beyer F, Booij L, Braun KPJ, Filho GB, Cahn W, Cannon DM, Chaim-Avancini TM, Chan SSM, Chen EYH, Crespo-Facorro B, Crone EA, Dannlowski U, de Zwarte SMC, Dietsche B, Donohoe G, Plessis SD, Durston S, Díaz-Caneja CM, Díaz-Zuluaga AM, Emsley R, Filippi M, Frodl T, Gorges M, Graff B, Grotegerd D, Gąsecki D, Hall JM, Holleran L, Holt R, Hopman HJ, Jansen A, Janssen J, Jodzio K, Jäncke L, Kaleda VG, Kassubek J, Masouleh SK, Kircher T, Koevoets MGJC, Kostic VS, Krug A, Lawrie SM, Lebedeva IS, Lee EHM, Lett TA, Lewis SJG, Liem F, Lombardo MV, Lopez-Jaramillo C, Margulies DS, Markett S, Marques P, Martínez-Zalacaín I, McDonald C, McIntosh AM, McPhilemy G, Meinert SL, Menchón JM, Montag C, Moreira PS, Morgado P, Mothersill DO, Mérillat S, Müller HP, Nabulsi L, Najt P, Narkiewicz K, Naumczyk P, Oranje B, Ortiz-Garcia de la Foz V, Peper JS, Pineda JA, Rasser PE, Redlich R, Repple J, Reuter M, Rosa PGP, Ruigrok ANV, Sabisz A, Schall U, Seedat S, Serpa MH, Skouras S, Soriano-Mas C, Sousa N, Szurowska E, Tomyshev AS, Tordesillas-Gutierrez D, Valk SL, van den Berg LH, van Erp TGM, van Haren NEM, van Leeuwen JMC, Villringer A, Vinkers CH, Vollmar C, Waller L, Walter H, Whalley HC, Witkowska M, Witte AV, Zanetti MV, Zhang R, de Lange SC Frontiers in neurology 31133958 Front Neurol 2019 https://www.ncbi.nlm.nih.gov/pubmed/31133958
Harmonizing PTSD severity scales across instruments and sites. Kennedy E, Dennis EL, Lindsey HM, deRoon-Cassini T, Du Plessis S, Fani N, Kaufman ML, Koen N, Larson CL, Laskowitz S, Lebois LAM, Morey RA, Newsome MR, Palermo C, Pastorek NJ, Powers A, Scheibel R, Seedat S, Seligowski A, Stein DJ, Stevens J, Sun D, Thompson P, Troyanskaya M, van Rooij SJH, Watts AA, Tomas CW, Williams W, Hillary FG, Pugh MJ, Wilde EA, Tate DF Neuropsychology 35797175 Neuropsychology 2023 May https://www.ncbi.nlm.nih.gov/pubmed/35797175
Longitudinal trajectories of cortical development in 22q11.2 copy number variants and typically developing controls. Jalbrzikowski M, Lin A, Vajdi A, Grigoryan V, Kushan L, Ching CRK, Schleifer C, Hayes RA, Chu SA, Sugar CA, Forsyth JK, Bearden CE Molecular psychiatry 35896619 Mol Psychiatry 2022 Oct https://www.ncbi.nlm.nih.gov/pubmed/35896619
Structural Brain Correlates of Childhood Inhibited Temperament: An ENIGMA-Anxiety Mega-analysis. Bas-Hoogendam JM, Bernstein R, Benson BE, Buss KA, Gunther KE, Pérez-Edgar K, Salum GA, Jackowski AP, Bressan RA, Zugman A, Degnan KA, Filippi CA, Fox NA, Henderson HA, Tang A, Zeytinoglu S, Harrewijn A, Hillegers MHJ, White T, van IJzendoorn MH, Schwartz CE, Felicione JM, DeYoung KA, Shackman AJ, Smith JF, Tillman RM, van den Berg YHM, Cillessen AHN, Roelofs K, Tyborowska A, Hill SY, Battaglia M, Tettamanti M, Dougherty LR, Jin J, Klein DN, Leung HC, Avery SN, Blackford JU, Clauss JA, Hayden EP, Liu P, Vandermeer MRJ, Goldsmith HH, Planalp EM, Nichols TE, Thompson PM, Westenberg PM, van der Wee NJA, Groenewold NA, Stein DJ, Winkler AM, Pine DS, ENIGMA-Anxiety Working Group Journal of the American Academy of Child and Adolescent Psychiatry 36038199 J Am Acad Child Adolesc Psychiatry 2022 Sep https://www.ncbi.nlm.nih.gov/pubmed/36038199
Structural network alterations in focal and generalized epilepsy assessed in a worldwide ENIGMA study follow axes of epilepsy risk gene expression. Larivière S, Royer J, Rodríguez-Cruces R, Paquola C, Caligiuri ME, Gambardella A, Concha L, Keller SS, Cendes F, Yasuda CL, Bonilha L, Gleichgerrcht E, Focke NK, Domin M, von Podewills F, Langner S, Rummel C, Wiest R, Martin P, Kotikalapudi R, O'Brien TJ, Sinclair B, Vivash L, Desmond PM, Lui E, Vaudano AE, Meletti S, Tondelli M, Alhusaini S, Doherty CP, Cavalleri GL, Delanty N, Kälviäinen R, Jackson GD, Kowalczyk M, Mascalchi M, Semmelroch M, Thomas RH, Soltanian-Zadeh H, Davoodi-Bojd E, Zhang J, Winston GP, Griffin A, Singh A, Tiwari VK, Kreilkamp BAK, Lenge M, Guerrini R, Hamandi K, Foley S, Rüber T, Weber B, Depondt C, Absil J, Carr SJA, Abela E, Richardson MP, Devinsky O, Severino M, Striano P, Tortora D, Kaestner E, Hatton SN, Vos SB, Caciagli L, Duncan JS, Whelan CD, Thompson PM, Sisodiya SM, Bernasconi A, Labate A, McDonald CR, Bernasconi N, Bernhardt BC Nature communications 35896547 Nat Commun 2022 Jul 27 https://www.ncbi.nlm.nih.gov/pubmed/35896547
Assessing general versus specific liability for externalizing problems in adolescence: Concurrent and prospective prediction of symptoms of conduct disorder, ADHD, and substance use. Perkins ER, Joyner KJ, Foell J, Drislane LE, Brislin SJ, Frick PJ, Yancey JR, Soto EF, Ganley CM, Keel PK, Sica C, Flor H, Nees F, Banaschewski T, Bokde ALW, Desrivières S, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Artiges E, Papadopoulos Orfanos D, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, The Imagen Consortium, Patrick CJ Journal of psychopathology and clinical science 36222627 J Psychopathol Clin Sci 2022 Oct https://www.ncbi.nlm.nih.gov/pubmed/36222627
Association of Brain Age, Lesion Volume, and Functional Outcome in Patients With Stroke. Liew SL, Schweighofer N, Cole JH, Zavaliangos-Petropulu A, Tavenner BP, Han LKM, Hahn T, Schmaal L, Donnelly MR, Jeong JN, Wang Z, Abdullah A, Kim JH, Hutton A, Barisano G, Borich MR, Boyd LA, Brodtmann A, Buetefisch CM, Byblow WD, Cassidy JM, Charalambous CC, Ciullo V, Conforto AB, Dacosta-Aguayo R, DiCarlo JA, Domin M, Dula AN, Egorova-Brumley N, Feng W, Geranmayeh F, Gregory CM, Hanlon CA, Hayward K, Holguin JA, Hordacre B, Jahanshad N, Kautz SA, Khlif MS, Kim H, Kuceyeski A, Lin DJ, Liu J, Lotze M, MacIntosh BJ, Margetis JL, Mataro M, Mohamed FB, Olafson ER, Park G, Piras F, Revill KP, Roberts P, Robertson AD, Sanossian N, Schambra HM, Seo NJ, Soekadar SR, Spalletta G, Stinear CM, Taga M, Tang WK, Thielman GT, Vecchio D, Ward NS, Westlye LT, Winstein CJ, Wittenberg GF, Wolf SL, Wong KA, Yu C, Cramer SC, Thompson PM Neurology 37015818 Neurology 2023 May 16 https://www.ncbi.nlm.nih.gov/pubmed/37015818
The functional connectome in obsessive-compulsive disorder: resting-state mega-analysis and machine learning classification for the ENIGMA-OCD consortium. Bruin WB, Abe Y, Alonso P, Anticevic A, Backhausen LL, Balachander S, Bargallo N, Batistuzzo MC, Benedetti F, Bertolin Triquell S, Brem S, Calesella F, Couto B, Denys DAJP, Echevarria MAN, Eng GK, Ferreira S, Feusner JD, Grazioplene RG, Gruner P, Guo JY, Hagen K, Hansen B, Hirano Y, Hoexter MQ, Jahanshad N, Jaspers-Fayer F, Kasprzak S, Kim M, Koch K, Bin Kwak Y, Kwon JS, Lazaro L, Li CR, Lochner C, Marsh R, Martínez-Zalacaín I, Menchon JM, Moreira PS, Morgado P, Nakagawa A, Nakao T, Narayanaswamy JC, Nurmi EL, Zorrilla JCP, Piacentini J, Picó-Pérez M, Piras F, Piras F, Pittenger C, Reddy JYC, Rodriguez-Manrique D, Sakai Y, Shimizu E, Shivakumar V, Simpson BH, Soriano-Mas C, Sousa N, Spalletta G, Stern ER, Evelyn Stewart S, Szeszko PR, Tang J, Thomopoulos SI, Thorsen AL, Yoshida T, Tomiyama H, Vai B, Veer IM, Venkatasubramanian G, Vetter NC, Vriend C, Walitza S, Waller L, Wang Z, Watanabe A, Wolff N, Yun JY, Zhao Q, van Leeuwen WA, van Marle HJF, van de Mortel LA, van der Straten A, van der Werf YD, ENIGMA-OCD Working Group, Thompson PM, Stein DJ, van den Heuvel OA, van Wingen GA Molecular psychiatry 37131072 Mol Psychiatry 2023 Oct https://www.ncbi.nlm.nih.gov/pubmed/37131072
Cerebellar Volume and Disease Staging in Parkinson's Disease: An ENIGMA-PD Study. Kerestes R, Laansma MA, Owens-Walton C, Perry A, van Heese EM, Al-Bachari S, Anderson TJ, Assogna F, Aventurato ÍK, van Balkom TD, Berendse HW, van den Berg KRE, Betts R, Brioschi R, Carr J, Cendes F, Clark LR, Dalrymple-Alford JC, Dirkx MF, Druzgal J, Durrant H, Emsley HCA, Garraux G, Haroon HA, Helmich RC, van den Heuvel OA, João RB, Johansson ME, Khachatryan SG, Lochner C, McMillan CT, Melzer TR, Mosley PE, Newman B, Opriessnig P, Parkes LM, Pellicano C, Piras F, Pitcher TL, Poston KL, Rango M, Roos A, Rummel C, Schmidt R, Schwingenschuh P, Silva LS, Smith V, Squarcina L, Stein DJ, Tavadyan Z, Tsai CC, Vecchio D, Vriend C, Wang JJ, Wiest R, Yasuda CL, Young CB, Jahanshad N, Thompson PM, van der Werf YD, Harding IH, ENIGMA-Parkinson's Study Movement disorders : official journal of the Movement Disorder Society 37964373 Mov Disord 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/37964373
A global multicohort study to map subcortical brain development and cognition in infancy and early childhood. Alex AM, Aguate F, Botteron K, Buss C, Chong YS, Dager SR, Donald KA, Entringer S, Fair DA, Fortier MV, Gaab N, Gilmore JH, Girault JB, Graham AM, Groenewold NA, Hazlett H, Lin W, Meaney MJ, Piven J, Qiu A, Rasmussen JM, Roos A, Schultz RT, Skeide MA, Stein DJ, Styner M, Thompson PM, Turesky TK, Wadhwa PD, Zar HJ, Zöllei L, de Los Campos G, Knickmeyer RC, ENIGMA ORIGINs group Nature neuroscience 37996530 Nat Neurosci 2024 Jan https://www.ncbi.nlm.nih.gov/pubmed/37996530
Normative Modeling of Brain Morphometry Across the Lifespan Using CentileBrain: Algorithm Benchmarking and Model Optimization. Ge R, Yu Y, Qi YX, Fan YV, Chen S, Gao C, Haas SS, Modabbernia A, New F, Agartz I, Asherson P, Ayesa-Arriola R, Banaj N, Banaschewski T, Baumeister S, Bertolino A, Boomsma DI, Borgwardt S, Bourque J, Brandeis D, Breier A, Brodaty H, Brouwer RM, Buckner R, Buitelaar JK, Cannon DM, Caseras X, Cervenka S, Conrod PJ, Crespo-Facorro B, Crivello F, Crone EA, de Haan L, de Zubicaray GI, Di Giorgio A, Erk S, Fisher SE, Franke B, Frodl T, Glahn DC, Grotegerd D, Gruber O, Gruner P, Gur RE, Gur RC, Harrison BJ, Hatton SN, Hickie I, Howells FM, Hulshoff Pol HE, Huyser C, Jernigan TL, Jiang J, Joska JA, Kahn RS, Kalnin AJ, Kochan NA, Koops S, Kuntsi J, Lagopoulos J, Lazaro L, Lebedeva IS, Lochner C, Martin NG, Mazoyer B, McDonald BC, McDonald C, McMahon KL, Nakao T, Nyberg L, Piras F, Portella MJ, Qiu J, Roffman JL, Sachdev PS, Sanford N, Satterthwaite TD, Saykin AJ, Schumann G, Sellgren CM, Sim K, Smoller JW, Soares J, Sommer IE, Spalletta G, Stein DJ, Tamnes CK, Thomopolous SI, Tomyshev AS, Tordesillas-Gutiérrez D, Trollor JN, van 't Ent D, van den Heuvel OA, van Erp TG, van Haren NE, Vecchio D, Veltman DJ, Walter H, Wang Y, Weber B, Wei D, Wen W, Westlye LT, Wierenga LM, Williams SC, Wright MJ, Medland S, Wu MJ, Yu K, Jahanshad N, Thompson PM, Frangou S bioRxiv : the preprint server for biology 38076938 bioRxiv 2023 Dec 2 https://www.ncbi.nlm.nih.gov/pubmed/38076938
Drinking motives, personality traits and life stressors-identifying pathways to harmful alcohol use in adolescence using a panel network approach. Freichel R, Pfirrmann J, Cousijn J, de Jong P, Franken I, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Heinz A, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Vaidya N, Whelan R, Schumann G, Walter H, Veer IM, Wiers RW, IMAGEN Consortium Addiction (Abingdon, England) 37157052 Addiction 2023 Oct https://www.ncbi.nlm.nih.gov/pubmed/37157052
The Role of Empathy in Alcohol Use of Bullying Perpetrators and Victims: Lower Personal Empathic Distress Makes Male Perpetrators of Bullying More Vulnerable to Alcohol Use. Prignitz M, Banaschewski T, Bokde ALW, Desrivières S, Grigis A, Garavan H, Gowland P, Heinz A, Martinot JL, Paillère Martinot ML, Artiges E, Papadopoulos Orfanos D, Poustka L, Hohmann S, Fröhner JH, Robinson L, Smolka MN, Walter H, Winterer JM, Whelan R, Schumann G, Nees F, Flor H, On Behalf Of The Imagen Consortium International journal of environmental research and public health 37444132 Int J Environ Res Public Health 2023 Jul 3 https://www.ncbi.nlm.nih.gov/pubmed/37444132
Uncontrolled eating and sensation-seeking partially explain the prediction of future binge drinking from adolescent brain structure. Rane RP, Musial MPM, Beck A, Rapp M, Schlagenhauf F, Banaschewski T, Bokde ALW, Paillère Martinot ML, Artiges E, Nees F, Lemaitre H, Hohmann S, Schumann G, Walter H, Heinz A, Ritter K, IMAGEN consortium NeuroImage. Clinical 37837892 Neuroimage Clin 2023 https://www.ncbi.nlm.nih.gov/pubmed/37837892
Personality, Social Factors, Brain Functioning, Familial Risk, and Trajectories of Alcohol Misuse in Adolescence. Tschorn M, Daedelow L, Szalek L, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Buechl C, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Heinz A, Rapp MA, IMAGEN Consortium JAMA network open 39150713 JAMA Netw Open 2024 Aug 1 https://www.ncbi.nlm.nih.gov/pubmed/39150713
Genetics of cell-type-specific post-transcriptional gene regulation during human neurogenesis. Aygün N, Vuong C, Krupa O, Mory J, Le BD, Valone JM, Liang D, Shafie B, Zhang P, Salinda A, Wen C, Gandal MJ, Love MI, de la Torre-Ubieta L, Stein JL American journal of human genetics 39168119 Am J Hum Genet 2024 Sep 5 https://www.ncbi.nlm.nih.gov/pubmed/39168119
Dissecting heterogeneity in cortical thickness abnormalities in major depressive disorder: a large-scale ENIGMA MDD normative modelling study. Bayer JMM, van Velzen LS, Pozzi E, Davey C, Han LKM, Bauduin SEEC, Bauer J, Benedetti F, Berger K, Bonnekoh LM, Brosch K, Bülow R, Couvy-Duchesne B, Cullen KR, Dannlowski U, Dima D, Dohm K, Evans JW, Fu CHY, Fuentes-Claramonte P, Godlewska BR, Goltermann J, Gonul A, Goya-Maldonado R, Grabe HJ, Groenewold NA, Grotegerd D, Gruber O, Hahn T, Hall GB, Hamilton J, Harrison BJ, Hatton SN, Hermesdorf M, Hickie IB, Ho TC, Jahanshad N, Jansen A, Jamieson AJ, Kamishikiryo T, Kircher T, Klimes-Dougan B, Krämer B, Kraus A, Krug A, Leehr EJ, Leenings R, Li M, McIntosh A, Medland SE, Meinert S, Melloni E, Mwangi B, Nenadić I, Okada G, Oudega M, Portella MJ, Rodríguez E, Romaniuk L, Rosa PG, Sacchet MD, Salvador R, Sämann PG, Shinzato H, Sim K, Simulionyte E, Soares JC, Stein DJ, Stein F, Stolicyn A, Straube B, Strike LT, Teutenberg L, Thomas-Odenthal F, Thomopoulos SI, Usemann P, van der Wee NJA, Völzke H, Wagenmakers M, Walter M, Whalley HC, Whittle S, Winter NR, Wittfeld K, Wu M, Yang TT, Zarate CA, Zunta-Soares GB, Thompson PM, Veltman DJ, Marquand AF, Schmaal L bioRxiv : the preprint server for biology 40166143 bioRxiv 2025 Mar 18 https://www.ncbi.nlm.nih.gov/pubmed/40166143
Relationships of eating behaviors with psychopathology, brain maturation and genetic risk for obesity in an adolescent cohort study. Yu X, Zhang Z, Herle M, Banaschewski T, Barker GJ, Bokde ALW, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Lemaître H, Paus T, Poustka L, Hohmann S, Holz N, Bäuchl C, Smolka MN, Vaidya N, Walter H, Whelan R, Schmidt U, Schumann G, Desrivières S, IMAGEN consortium Nature. Mental health 39811626 Nat Ment Health 2025 https://www.ncbi.nlm.nih.gov/pubmed/39811626
Gene-environment interactions in the influence of maternal education on adolescent neurodevelopment using ABCD study. Shi R, Chang X, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Holz N, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Lin X, Feng J, IMAGEN Consortium Science advances 39546599 Sci Adv 2024 Nov 15 https://www.ncbi.nlm.nih.gov/pubmed/39546599
Arc controls alcohol cue relapse by a central amygdala mechanism. Pagano R, Salamian A, Zielinski J, Beroun A, Nalberczak-Skóra M, Skonieczna E, Cały A, Tay N, Banaschewski T, Desrivières S, Grigis A, Garavan H, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, IMAGEN consortium, Kalita K, Bito H, Müller CP, Schumann G, Okuno H, Radwanska K Molecular psychiatry 36357670 Mol Psychiatry 2023 Feb https://www.ncbi.nlm.nih.gov/pubmed/36357670
Coordinated cortical thickness alterations across six neurodevelopmental and psychiatric disorders. Hettwer MD, Larivière S, Park BY, van den Heuvel OA, Schmaal L, Andreassen OA, Ching CRK, Hoogman M, Buitelaar J, van Rooij D, Veltman DJ, Stein DJ, Franke B, van Erp TGM, ENIGMA ADHD Working Group, ENIGMA Autism Working Group, ENIGMA Bipolar Disorder Working Group, ENIGMA Major Depression Working Group, ENIGMA OCD Working Group, ENIGMA Schizophrenia Working Group, Jahanshad N, Thompson PM, Thomopoulos SI, Bethlehem RAI, Bernhardt BC, Eickhoff SB, Valk SL Nature communications 36369423 Nat Commun 2022 Nov 11 https://www.ncbi.nlm.nih.gov/pubmed/36369423
Structural brain abnormalities and aggressive behaviour in schizophrenia: Mega-analysis of data from 2095 patients and 2861 healthy controls via the ENIGMA consortium. Lamsma J, Raine A, Kia SM, Cahn W, Arold D, Banaj N, Barone A, Brosch K, Brouwer R, Brunetti A, Calhoun VD, Chew QH, Choi S, Chung YC, Ciccarelli M, Cobia D, Cocozza S, Dannlowski U, Dazzan P, de Bartolomeis A, Di Forti M, Dumais A, Edmond JT, Ehrlich S, Evermann U, Flinkenflügel K, Georgiadis F, Glahn DC, Goltermann J, Green MJ, Grotegerd D, Guerrero-Pedraza A, Ha M, Hong EL, Hulshoff Pol H, Iasevoli F, Kaiser S, Kaleda V, Karuk A, Kim M, Kircher T, Kirschner M, Kochunov P, Kwon JS, Lebedeva I, Lencer R, Marques TR, Meinert S, Murray R, Nenadić I, Nguyen D, Pearlson G, Piras F, Pomarol-Clotet E, Pontillo G, Potvin S, Preda A, Quidé Y, Rodrigue A, Rootes-Murdy K, Salvador R, Skoch A, Sim K, Spalletta G, Spaniel F, Stein F, Thomas-Odenthal F, Tikàsz A, Tomecek D, Tomyshev A, Tranfa M, Tsogt U, Turner JA, van Erp TGM, van Haren NEM, van Os J, Vecchio D, Wang L, Wroblewski A, Nickl-Jockschat T medRxiv : the preprint server for health sciences 38370846 medRxiv 2024 Feb 5 https://www.ncbi.nlm.nih.gov/pubmed/38370846
Brain-age prediction: Systematic evaluation of site effects, and sample age range and size. Yu Y, Cui HQ, Haas SS, New F, Sanford N, Yu K, Zhan D, Yang G, Gao JH, Wei D, Qiu J, Banaj N, Boomsma DI, Breier A, Brodaty H, Buckner RL, Buitelaar JK, Cannon DM, Caseras X, Clark VP, Conrod PJ, Crivello F, Crone EA, Dannlowski U, Davey CG, de Haan L, de Zubicaray GI, Di Giorgio A, Fisch L, Fisher SE, Franke B, Glahn DC, Grotegerd D, Gruber O, Gur RE, Gur RC, Hahn T, Harrison BJ, Hatton S, Hickie IB, Hulshoff Pol HE, Jamieson AJ, Jernigan TL, Jiang J, Kalnin AJ, Kang S, Kochan NA, Kraus A, Lagopoulos J, Lazaro L, McDonald BC, McDonald C, McMahon KL, Mwangi B, Piras F, Rodriguez-Cruces R, Royer J, Sachdev PS, Satterthwaite TD, Saykin AJ, Schumann G, Sevaggi P, Smoller JW, Soares JC, Spalletta G, Tamnes CK, Trollor JN, Van't Ent D, Vecchio D, Walter H, Wang Y, Weber B, Wen W, Wierenga LM, Williams SCR, Wu MJ, Zunta-Soares GB, Bernhardt B, Thompson P, Frangou S, Ge R, ENIGMA‐Lifespan Working Group Human brain mapping 38949537 Hum Brain Mapp 2024 Jul 15 https://www.ncbi.nlm.nih.gov/pubmed/38949537
Adolescents' pain-related ontogeny shares a neural basis with adults' chronic pain in basothalamo-cortical organization. Heukamp NJ, Banaschewski T, Bokde ALW, Desrivières S, Grigis A, Garavan H, Gowland P, Heinz A, Kandić M, Brühl R, Martinot JL, Paillère Martinot ML, Artiges E, Papadopoulos Orfanos D, Lemaitre H, Löffler M, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Usai K, Vaidya N, Walter H, Whelan R, Schumann G, Flor H, Nees F, IMAGEN Consortium iScience 38322983 iScience 2024 Feb 16 https://www.ncbi.nlm.nih.gov/pubmed/38322983
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Mega-analysis of association between obesity and cortical morphology in bipolar disorders: ENIGMA study in 2832 participants. McWhinney SR, Abé C, Alda M, Benedetti F, Bøen E, Del Mar Bonnin C, Borgers T, Brosch K, Canales-Rodríguez EJ, Cannon DM, Dannlowski U, Diaz-Zuluaga AM, Dietze LMF, Elvsåshagen T, Eyler LT, Fullerton JM, Goikolea JM, Goltermann J, Grotegerd D, Haarman BCM, Hahn T, Howells FM, Ingvar M, Jahanshad N, Kircher TTJ, Krug A, Kuplicki RT, Landén M, Lemke H, Liberg B, Lopez-Jaramillo C, Malt UF, Martyn FM, Mazza E, McDonald C, McPhilemy G, Meier S, Meinert S, Meller T, Melloni EMT, Mitchell PB, Nabulsi L, Nenadic I, Opel N, Ophoff RA, Overs BJ, Pfarr JK, Pineda-Zapata JA, Pomarol-Clotet E, Raduà J, Repple J, Richter M, Ringwald KG, Roberts G, Ross A, Salvador R, Savitz J, Schmitt S, Schofield PR, Sim K, Stein DJ, Stein F, Temmingh HS, Thiel K, Thomopoulos SI, van Haren NEM, Vargas C, Vieta E, Vreeker A, Waltemate L, Yatham LN, Ching CRK, Andreassen OA, Thompson PM, Hajek T, ENIGMA Bipolar Disorder Working Group Psychological medicine 36846964 Psychol Med 2023 Oct https://www.ncbi.nlm.nih.gov/pubmed/36846964
Genetic Heterogeneity Shapes Brain Connectivity in Psychiatry. Moreau CA, Harvey A, Kumar K, Huguet G, Urchs SGW, Douard EA, Schultz LM, Sharmarke H, Jizi K, Martin CO, Younis N, Tamer P, Rolland T, Martineau JL, Orban P, Silva AI, Hall J, van den Bree MBM, Owen MJ, Linden DEJ, Labbe A, Lippé S, Bearden CE, Almasy L, Glahn DC, Thompson PM, Bourgeron T, Bellec P, Jacquemont S Biological psychiatry 36372570 Biol Psychiatry 2023 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/36372570
Longitudinal Trajectory of the Link Between Ventral Striatum and Depression in Adolescence. Pan PM, Sato JR, Paillère Martinot ML, Martinot JL, Artiges E, Penttilä J, Grimmer Y, van Noort BM, Becker A, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Garavan H, Ittermann B, Nees F, Papadopoulos Orfanos D, Poustka L, Fröhner JH, Whelan R, Schumann G, Westwater ML, Grillon C, Cogo-Moreira H, Stringaris A, Ernst M, IMAGEN Consortium The American journal of psychiatry 35582783 Am J Psychiatry 2022 Jul https://www.ncbi.nlm.nih.gov/pubmed/35582783
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A stable and replicable neural signature of lifespan adversity in the adult brain. Holz NE, Zabihi M, Kia SM, Monninger M, Aggensteiner PM, Siehl S, Floris DL, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Orfanos DP, Paus T, Poustka L, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Meyer-Lindenberg A, Brandeis D, Buitelaar JK, Nees F, Beckmann C, IMAGEN Consortium, Banaschewski T, Marquand AF Nature neuroscience 37604888 Nat Neurosci 2023 Sep https://www.ncbi.nlm.nih.gov/pubmed/37604888
Infant subcortical brain volumes associated with maternal obesity and diabetes: a large multicohort human study. Alex AM, Rasmussen JM, Tuulari JJ, Sigurdardottir JN, Buss C, Donald KA, Edwards AD, Entringer S, Gilmore JH, Groenewold NA, Karlsson H, Karlsson L, Lawrence KE, Mattila I, Stein DJ, Styner M, Thompson PM, Wadhwa PD, Zar HJ, Zhu X, de Los Campos G, Knickmeyer RC, Luo S, ENIGMA-ORIGINs working group BMC medicine 41987145 BMC Med 2026 Apr 16 https://www.ncbi.nlm.nih.gov/pubmed/41987145
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Electrophysiological Endophenotypes for Schizophrenia. Owens EM, Bachman P, Glahn DC, Bearden CE Harvard review of psychiatry 26954597 Harv Rev Psychiatry 2016 Mar-Apr https://www.ncbi.nlm.nih.gov/pubmed/26954597
The effect of increased genetic risk for Alzheimer's disease on hippocampal and amygdala volume. Lupton MK, Strike L, Hansell NK, Wen W, Mather KA, Armstrong NJ, Thalamuthu A, McMahon KL, de Zubicaray GI, Assareh AA, Simmons A, Proitsi P, Powell JF, Montgomery GW, Hibar DP, Westman E, Tsolaki M, Kloszewska I, Soininen H, Mecocci P, Velas B, Lovestone S, Alzheimer's Disease Neuroimaging Initiative, Brodaty H, Ames D, Trollor JN, Martin NG, Thompson PM, Sachdev PS, Wright MJ Neurobiology of aging 26973105 Neurobiol Aging 2016 Apr https://www.ncbi.nlm.nih.gov/pubmed/26973105
Overdominant Effect of a CHRNA4 Polymorphism on Cingulo-Opercular Network Activity and Cognitive Control. Sadaghiani S, Ng B, Altmann A, Poline JB, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Burke Quinlan E, Conrod P, Desrivières S, Flor H, Frouin V, Garavan H, Gowland P, Gallinat J, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Lemaitre H, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Napolioni V, Greicius M The Journal of neuroscience : the official journal of the Society for Neuroscience 28877969 J Neurosci 2017 Oct 4 https://www.ncbi.nlm.nih.gov/pubmed/28877969
Prefrontal cortical thinning links to negative symptoms in schizophrenia via the ENIGMA consortium. Walton E, Hibar DP, van Erp TGM, Potkin SG, Roiz-Santiañez R, Crespo-Facorro B, Suarez-Pinilla P, van Haren NEM, de Zwarte SMC, Kahn RS, Cahn W, Doan NT, Jørgensen KN, Gurholt TP, Agartz I, Andreassen OA, Westlye LT, Melle I, Berg AO, Morch-Johnsen L, Færden A, Flyckt L, Fatouros-Bergman H, Karolinska Schizophrenia Project Consortium (KaSP), Jönsson EG, Hashimoto R, Yamamori H, Fukunaga M, Jahanshad N, De Rossi P, Piras F, Banaj N, Spalletta G, Gur RE, Gur RC, Wolf DH, Satterthwaite TD, Beard LM, Sommer IE, Koops S, Gruber O, Richter A, Krämer B, Kelly S, Donohoe G, McDonald C, Cannon DM, Corvin A, Gill M, Di Giorgio A, Bertolino A, Lawrie S, Nickson T, Whalley HC, Neilson E, Calhoun VD, Thompson PM, Turner JA, Ehrlich S Psychological medicine 28545597 Psychol Med 2018 Jan https://www.ncbi.nlm.nih.gov/pubmed/28545597
Associations of the Intellectual Disability Gene MYT1L with Helix-Loop-Helix Gene Expression, Hippocampus Volume and Hippocampus Activation During Memory Retrieval. Kepa A, Martinez Medina L, Erk S, Srivastava DP, Fernandes A, Toro R, Lévi S, Ruggeri B, Fernandes C, Degenhardt F, Witt SH, Meyer-Lindenberg A, Poncer JC, Martinot JL, Paillère Martinot ML, Müller CP, Heinz A, Walter H, Schumann G, Desrivières S Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 28470180 Neuropsychopharmacology 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/28470180
The Arf6 activator Efa6/PSD3 confers regional specificity and modulates ethanol consumption in Drosophila and humans. Gonzalez DA, Jia T, Pinzón JH, Acevedo SF, Ojelade SA, Xu B, Tay N, Desrivières S, Hernandez JL, Banaschewski T, Büchel C, Bokde ALW, Conrod PJ, Flor H, Frouin V, Gallinat J, Garavan H, Gowland PA, Heinz A, Ittermann B, Lathrop M, Martinot JL, Paus T, Smolka MN, IMAGEN Consortium, Rodan AR, Schumann G, Rothenfluh A Molecular psychiatry 28607459 Mol Psychiatry 2018 Mar https://www.ncbi.nlm.nih.gov/pubmed/28607459
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Effects of dopaminergic genes, prenatal adversities, and their interaction on attention-deficit/hyperactivity disorder and neural correlates of response inhibition. van der Meer D, Hartman CA, van Rooij D, Franke B, Heslenfeld DJ, Oosterlaan J, Faraone SV, Buitelaar JK, Hoekstra PJ Journal of psychiatry & neuroscience : JPN 28234207 J Psychiatry Neurosci 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/28234207
Reproducibility of tract-based white matter microstructural measures using the ENIGMA-DTI protocol. Acheson A, Wijtenburg SA, Rowland LM, Winkler A, Mathias CW, Hong LE, Jahanshad N, Patel B, Thompson PM, McGuire SA, Sherman PM, Kochunov P, Dougherty DM Brain and behavior 28239525 Brain Behav 2017 Feb https://www.ncbi.nlm.nih.gov/pubmed/28239525
Subcortical brain structure and suicidal behaviour in major depressive disorder: a meta-analysis from the ENIGMA-MDD working group. Rentería ME, Schmaal L, Hibar DP, Couvy-Duchesne B, Strike LT, Mills NT, de Zubicaray GI, McMahon KL, Medland SE, Gillespie NA, Hatton SN, Lagopoulos J, Veltman DJ, van der Wee N, van Erp TGM, Wittfeld K, Grabe HJ, Block A, Hegenscheid K, Völzke H, Veer IM, Walter H, Schnell K, Schramm E, Normann C, Schoepf D, Konrad C, Zurowski B, Godlewska BR, Cowen PJ, Penninx BWJH, Jahanshad N, Thompson PM, Wright MJ, Martin NG, Christensen H, Hickie IB Translational psychiatry 28463239 Transl Psychiatry 2017 May 2 https://www.ncbi.nlm.nih.gov/pubmed/28463239
Widespread Allelic Heterogeneity in Complex Traits. Hormozdiari F, Zhu A, Kichaev G, Ju CJ, Segrè AV, Joo JWJ, Won H, Sankararaman S, Pasaniuc B, Shifman S, Eskin E American journal of human genetics 28475861 Am J Hum Genet 2017 May 4 https://www.ncbi.nlm.nih.gov/pubmed/28475861
Enhancing Diffusion MRI Measures By Integrating Grey and White Matter Morphometry With Hyperbolic Wasserstein Distance. Zhang W, Shi J, Yu J, Zhan L, Thompson PM, Wang Y Proceedings. IEEE International Symposium on Biomedical Imaging 28936280 Proc IEEE Int Symp Biomed Imaging 2017 https://www.ncbi.nlm.nih.gov/pubmed/28936280
Association of Protein Phosphatase PPM1G With Alcohol Use Disorder and Brain Activity During Behavioral Control in a Genome-Wide Methylation Analysis. Ruggeri B, Nymberg C, Vuoksimaa E, Lourdusamy A, Wong CP, Carvalho FM, Jia T, Cattrell A, Macare C, Banaschewski T, Barker GJ, Bokde AL, Bromberg U, Büchel C, Conrod PJ, Fauth-Bühler M, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Nees F, Pausova Z, Paus T, Rietschel M, Robbins T, Smolka MN, Spanagel R, Bakalkin G, Mill J, Sommer WH, Rose RJ, Yan J, Aliev F, Dick D, Kaprio J, Desrivières S, Schumann G, IMAGEN Consortium The American journal of psychiatry 25982659 Am J Psychiatry 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/25982659
Structural abnormality of the corticospinal tract in major depressive disorder. Sacchet MD, Prasad G, Foland-Ross LC, Joshi SH, Hamilton JP, Thompson PM, Gotlib IH Biology of mood & anxiety disorders 25295159 Biol Mood Anxiety Disord 2014 https://www.ncbi.nlm.nih.gov/pubmed/25295159
Abnormal hippocampal morphology in dissociative identity disorder and post-traumatic stress disorder correlates with childhood trauma and dissociative symptoms. Chalavi S, Vissia EM, Giesen ME, Nijenhuis ER, Draijer N, Cole JH, Dazzan P, Pariante CM, Madsen SK, Rajagopalan P, Thompson PM, Toga AW, Veltman DJ, Reinders AA Human brain mapping 25545784 Hum Brain Mapp 2015 May https://www.ncbi.nlm.nih.gov/pubmed/25545784
Connectopathy in ageing and dementia. Toga AW, Thompson PM Brain : a journal of neurology 25413934 Brain 2014 Dec https://www.ncbi.nlm.nih.gov/pubmed/25413934
Contributions of Feature Binding During Encoding and Functional Connectivity of the Medial Temporal Lobe Structures to Episodic Memory Deficits Across the Prodromal and First-Episode Phases of Schizophrenia. Haut KM, van Erp TG, Knowlton B, Bearden CE, Subotnik K, Ventura J, Nuechterlein KH, Cannon TD Clinical psychological science : a journal of the Association for Psychological Science 25750836 Clin Psychol Sci 2015 Mar https://www.ncbi.nlm.nih.gov/pubmed/25750836
Novel Neuroimaging Methods to Understand How HIV Affects the Brain. Thompson PM, Jahanshad N Current HIV/AIDS reports 25902966 Curr HIV/AIDS Rep 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/25902966
Associations between depression and anxiety symptoms and retinal vessel caliber in adolescents and young adults. Meier MH, Gillespie NA, Hansell NK, Hewitt AW, Hickie IB, Lu Y, MacGregor S, Medland SE, Sun C, Wong TY, Wright MJ, Zhu G, Martin NG, Mackey DA Psychosomatic medicine 25373892 Psychosom Med 2014 Nov-Dec https://www.ncbi.nlm.nih.gov/pubmed/25373892
Hippocampal and amygdalar local structural differences in elderly patients with schizophrenia. Prestia A, Cavedo E, Boccardi M, Muscio C, Adorni A, Geroldi C, Bonetti M, Thompson PM, Frisoni GB The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry 24534522 Am J Geriatr Psychiatry 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/24534522
Heterochronicity of white matter development and aging explains regional patient control differences in schizophrenia. Kochunov P, Ganjgahi H, Winkler A, Kelly S, Shukla DK, Du X, Jahanshad N, Rowland L, Sampath H, Patel B, O'Donnell P, Xie Z, Paciga SA, Schubert CR, Chen J, Zhang G, Thompson PM, Nichols TE, Hong LE Human brain mapping 27477775 Hum Brain Mapp 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/27477775
Structural asymmetries of the human cerebellum in relation to cerebral cortical asymmetries and handedness. Kavaklioglu T, Guadalupe T, Zwiers M, Marquand AF, Onnink M, Shumskaya E, Brunner H, Fernandez G, Fisher SE, Francks C Brain structure & function 27566607 Brain Struct Funct 2017 May https://www.ncbi.nlm.nih.gov/pubmed/27566607
Functional connectivity in cortico-subcortical brain networks underlying reward processing in attention-deficit/hyperactivity disorder. Oldehinkel M, Beckmann CF, Franke B, Hartman CA, Hoekstra PJ, Oosterlaan J, Heslenfeld D, Buitelaar JK, Mennes M NeuroImage. Clinical 27818941 Neuroimage Clin 2016 https://www.ncbi.nlm.nih.gov/pubmed/27818941
Partitioning heritability analysis reveals a shared genetic basis of brain anatomy and schizophrenia. Lee PH, Baker JT, Holmes AJ, Jahanshad N, Ge T, Jung JY, Cruz Y, Manoach DS, Hibar DP, Faskowitz J, McMahon KL, de Zubicaray GI, Martin NG, Wright MJ, Öngür D, Buckner R, Roffman J, Thompson PM, Smoller JW Molecular psychiatry 27725656 Mol Psychiatry 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/27725656
Conformal invariants for multiply connected surfaces: Application to landmark curve-based brain morphometry analysis. Shi J, Zhang W, Tang M, Caselli RJ, Wang Y Medical image analysis 27639215 Med Image Anal 2017 Jan https://www.ncbi.nlm.nih.gov/pubmed/27639215
Enlarged striatal volume in adults with ADHD carrying the 9-6 haplotype of the dopamine transporter gene DAT1. Onnink AM, Franke B, van Hulzen K, Zwiers MP, Mostert JC, Schene AH, Heslenfeld DJ, Oosterlaan J, Hoekstra PJ, Hartman CA, Vasquez AA, Kan CC, Buitelaar J, Hoogman M Journal of neural transmission (Vienna, Austria : 1996) 26935821 J Neural Transm (Vienna) 2016 Aug https://www.ncbi.nlm.nih.gov/pubmed/26935821
Effect of Electroconvulsive Therapy on Striatal Morphometry in Major Depressive Disorder. Wade BS, Joshi SH, Njau S, Leaver AM, Vasavada M, Woods RP, Gutman BA, Thompson PM, Espinoza R, Narr KL Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 27067127 Neuropsychopharmacology 2016 Sep https://www.ncbi.nlm.nih.gov/pubmed/27067127
Colocalization of GWAS and eQTL Signals Detects Target Genes. Hormozdiari F, van de Bunt M, Segrè AV, Li X, Joo JWJ, Bilow M, Sul JH, Sankararaman S, Pasaniuc B, Eskin E American journal of human genetics 27866706 Am J Hum Genet 2016 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/27866706
Widespread white matter microstructural differences in schizophrenia across 4322 individuals: results from the ENIGMA Schizophrenia DTI Working Group. Kelly S, Jahanshad N, Zalesky A, Kochunov P, Agartz I, Alloza C, Andreassen OA, Arango C, Banaj N, Bouix S, Bousman CA, Brouwer RM, Bruggemann J, Bustillo J, Cahn W, Calhoun V, Cannon D, Carr V, Catts S, Chen J, Chen JX, Chen X, Chiapponi C, Cho KK, Ciullo V, Corvin AS, Crespo-Facorro B, Cropley V, De Rossi P, Diaz-Caneja CM, Dickie EW, Ehrlich S, Fan FM, Faskowitz J, Fatouros-Bergman H, Flyckt L, Ford JM, Fouche JP, Fukunaga M, Gill M, Glahn DC, Gollub R, Goudzwaard ED, Guo H, Gur RE, Gur RC, Gurholt TP, Hashimoto R, Hatton SN, Henskens FA, Hibar DP, Hickie IB, Hong LE, Horacek J, Howells FM, Hulshoff Pol HE, Hyde CL, Isaev D, Jablensky A, Jansen PR, Janssen J, Jönsson EG, Jung LA, Kahn RS, Kikinis Z, Liu K, Klauser P, Knöchel C, Kubicki M, Lagopoulos J, Langen C, Lawrie S, Lenroot RK, Lim KO, Lopez-Jaramillo C, Lyall A, Magnotta V, Mandl RCW, Mathalon DH, McCarley RW, McCarthy-Jones S, McDonald C, McEwen S, McIntosh A, Melicher T, Mesholam-Gately RI, Michie PT, Mowry B, Mueller BA, Newell DT, O'Donnell P, Oertel-Knöchel V, Oestreich L, Paciga SA, Pantelis C, Pasternak O, Pearlson G, Pellicano GR, Pereira A, Pineda Zapata J, Piras F, Potkin SG, Preda A, Rasser PE, Roalf DR, Roiz R, Roos A, Rotenberg D, Satterthwaite TD, Savadjiev P, Schall U, Scott RJ, Seal ML, Seidman LJ, Shannon Weickert C, Whelan CD, Shenton ME, Kwon JS, Spalletta G, Spaniel F, Sprooten E, Stäblein M, Stein DJ, Sundram S, Tan Y, Tan S, Tang S, Temmingh HS, Westlye LT, Tønnesen S, Tordesillas-Gutierrez D, Doan NT, Vaidya J, van Haren NEM, Vargas CD, Vecchio D, Velakoulis D, Voineskos A, Voyvodic JQ, Wang Z, Wan P, Wei D, Weickert TW, Whalley H, White T, Whitford TJ, Wojcik JD, Xiang H, Xie Z, Yamamori H, Yang F, Yao N, Zhang G, Zhao J, van Erp TGM, Turner J, Thompson PM, Donohoe G Molecular psychiatry 29038599 Mol Psychiatry 2018 May https://www.ncbi.nlm.nih.gov/pubmed/29038599
Network-based approaches to examining stress in the adolescent brain. Ho TC, Dennis EL, Thompson PM, Gotlib IH Neurobiology of stress 29888310 Neurobiol Stress 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/29888310
Individual differences in stop-related activity are inflated by the adaptive algorithm in the stop signal task. D'Alberto N, Chaarani B, Orr CA, Spechler PA, Albaugh MD, Allgaier N, Wonnell A, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Conrod PJ, Desrivières S, Flor H, Fröhner JH, Frouin V, Gowland P, Heinz A, Itterman B, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Papadopoulos Orfanos D, Poustka L, Robbins TW, Smolka MN, Walter H, Whelan R, Schumann G, Potter AS, Garavan H Human brain mapping 29656430 Hum Brain Mapp 2018 Aug https://www.ncbi.nlm.nih.gov/pubmed/29656430
Emotional Processing in Obsessive-Compulsive Disorder: A Systematic Review and Meta-analysis of 25 Functional Neuroimaging Studies. Thorsen AL, Hagland P, Radua J, Mataix-Cols D, Kvale G, Hansen B, van den Heuvel OA Biological psychiatry. Cognitive neuroscience and neuroimaging 29550459 Biol Psychiatry Cogn Neurosci Neuroimaging 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/29550459
The initiation of cannabis use in adolescence is predicted by sex-specific psychosocial and neurobiological features. Spechler PA, Allgaier N, Chaarani B, Whelan R, Watts R, Orr C, Albaugh MD, D'Alberto N, Higgins ST, Hudson KE, Mackey S, Potter A, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Cattrell A, Conrod PJ, Desrivières S, Flor H, Frouin V, Gallinat J, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Smolka MN, Walter H, Schumann G, Althoff RR, Garavan H, IMAGEN Consortium The European journal of neuroscience 29889330 Eur J Neurosci 2019 Aug https://www.ncbi.nlm.nih.gov/pubmed/29889330
Large-scale mapping of cortical alterations in 22q11.2 deletion syndrome: Convergence with idiopathic psychosis and effects of deletion size. Sun D, Ching CRK, Lin A, Forsyth JK, Kushan L, Vajdi A, Jalbrzikowski M, Hansen L, Villalon-Reina JE, Qu X, Jonas RK, van Amelsvoort T, Bakker G, Kates WR, Antshel KM, Fremont W, Campbell LE, McCabe KL, Daly E, Gudbrandsen M, Murphy CM, Murphy D, Craig M, Vorstman J, Fiksinski A, Koops S, Ruparel K, Roalf DR, Gur RE, Schmitt JE, Simon TJ, Goodrich-Hunsaker NJ, Durdle CA, Bassett AS, Chow EWC, Butcher NJ, Vila-Rodriguez F, Doherty J, Cunningham A, van den Bree MBM, Linden DEJ, Moss H, Owen MJ, Murphy KC, McDonald-McGinn DM, Emanuel B, van Erp TGM, Turner JA, Thompson PM, Bearden CE Molecular psychiatry 29895892 Mol Psychiatry 2020 Aug https://www.ncbi.nlm.nih.gov/pubmed/29895892
Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. Savage JE, Jansen PR, Stringer S, Watanabe K, Bryois J, de Leeuw CA, Nagel M, Awasthi S, Barr PB, Coleman JRI, Grasby KL, Hammerschlag AR, Kaminski JA, Karlsson R, Krapohl E, Lam M, Nygaard M, Reynolds CA, Trampush JW, Young H, Zabaneh D, Hägg S, Hansell NK, Karlsson IK, Linnarsson S, Montgomery GW, Muñoz-Manchado AB, Quinlan EB, Schumann G, Skene NG, Webb BT, White T, Arking DE, Avramopoulos D, Bilder RM, Bitsios P, Burdick KE, Cannon TD, Chiba-Falek O, Christoforou A, Cirulli ET, Congdon E, Corvin A, Davies G, Deary IJ, DeRosse P, Dickinson D, Djurovic S, Donohoe G, Conley ED, Eriksson JG, Espeseth T, Freimer NA, Giakoumaki S, Giegling I, Gill M, Glahn DC, Hariri AR, Hatzimanolis A, Keller MC, Knowles E, Koltai D, Konte B, Lahti J, Le Hellard S, Lencz T, Liewald DC, London E, Lundervold AJ, Malhotra AK, Melle I, Morris D, Need AC, Ollier W, Palotie A, Payton A, Pendleton N, Poldrack RA, Räikkönen K, Reinvang I, Roussos P, Rujescu D, Sabb FW, Scult MA, Smeland OB, Smyrnis N, Starr JM, Steen VM, Stefanis NC, Straub RE, Sundet K, Tiemeier H, Voineskos AN, Weinberger DR, Widen E, Yu J, Abecasis G, Andreassen OA, Breen G, Christiansen L, Debrabant B, Dick DM, Heinz A, Hjerling-Leffler J, Ikram MA, Kendler KS, Martin NG, Medland SE, Pedersen NL, Plomin R, Polderman TJC, Ripke S, van der Sluis S, Sullivan PF, Vrieze SI, Wright MJ, Posthuma D Nature genetics 29942086 Nat Genet 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/29942086
Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. Smit DJA, Wright MJ, Meyers JL, Martin NG, Ho YYW, Malone SM, Zhang J, Burwell SJ, Chorlian DB, de Geus EJC, Denys D, Hansell NK, Hottenga JJ, McGue M, van Beijsterveldt CEM, Jahanshad N, Thompson PM, Whelan CD, Medland SE, Porjesz B, Lacono WG, Boomsma DI Human brain mapping 29947131 Hum Brain Mapp 2018 Nov https://www.ncbi.nlm.nih.gov/pubmed/29947131
A Continuous Model of Cortical Connectivity. Moyer D, Gutman BA, Faskowitz J, Jahanshad N, Thompson PM Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 29147688 Med Image Comput Comput Assist Interv 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/29147688
Visual hallucinations are associated with hyperconnectivity between the amygdala and visual cortex in people with a diagnosis of schizophrenia. Ford JM, Palzes VA, Roach BJ, Potkin SG, van Erp TG, Turner JA, Mueller BA, Calhoun VD, Voyvodic J, Belger A, Bustillo J, Vaidya JG, Preda A, McEwen SC, Functional Imaging Biomedical Informatics Research Network, Mathalon DH Schizophrenia bulletin 24619536 Schizophr Bull 2015 Jan https://www.ncbi.nlm.nih.gov/pubmed/24619536
Verbal memory declines more rapidly with age in HIV infected versus uninfected adults. Seider TR, Luo X, Gongvatana A, Devlin KN, de la Monte SM, Chasman JD, Yan P, Tashima KT, Navia B, Cohen RA Journal of clinical and experimental neuropsychology 24645772 J Clin Exp Neuropsychol 2014 https://www.ncbi.nlm.nih.gov/pubmed/24645772
Serum cholesterol and variant in cholesterol-related gene CETP predict white matter microstructure. Warstadt NM, Dennis EL, Jahanshad N, Kohannim O, Nir TM, McMahon KL, de Zubicaray GI, Montgomery GW, Henders AK, Martin NG, Whitfield JB, Jack CR Jr, Bernstein MA, Weiner MW, Toga AW, Wright MJ, Thompson PM, Alzheimer's Disease Neuroimaging Initiative (ADNI) Neurobiology of aging 24997672 Neurobiol Aging 2014 Nov https://www.ncbi.nlm.nih.gov/pubmed/24997672
Mediodorsal and visual thalamic connectivity differ in schizophrenia and bipolar disorder with and without psychosis history. Anticevic A, Yang G, Savic A, Murray JD, Cole MW, Repovs G, Pearlson GD, Glahn DC Schizophrenia bulletin 25031221 Schizophr Bull 2014 Nov https://www.ncbi.nlm.nih.gov/pubmed/25031221
Neural dysregulation during a working memory task in human immunodeficiency virus-seropositive and hepatitis C coinfected individuals. Caldwell JZ, Gongvatana A, Navia BA, Sweet LH, Tashima K, Ding M, Cohen RA Journal of neurovirology 24867610 J Neurovirol 2014 Aug https://www.ncbi.nlm.nih.gov/pubmed/24867610
Heritability of head motion during resting state functional MRI in 462 healthy twins. Couvy-Duchesne B, Blokland GA, Hickie IB, Thompson PM, Martin NG, de Zubicaray GI, McMahon KL, Wright MJ NeuroImage 25132021 Neuroimage 2014 Nov 15 https://www.ncbi.nlm.nih.gov/pubmed/25132021
Progressive reduction in cortical thickness as psychosis develops: a multisite longitudinal neuroimaging study of youth at elevated clinical risk. Cannon TD, Chung Y, He G, Sun D, Jacobson A, van Erp TG, McEwen S, Addington J, Bearden CE, Cadenhead K, Cornblatt B, Mathalon DH, McGlashan T, Perkins D, Jeffries C, Seidman LJ, Tsuang M, Walker E, Woods SW, Heinssen R, North American Prodrome Longitudinal Study Consortium Biological psychiatry 25034946 Biol Psychiatry 2015 Jan 15 https://www.ncbi.nlm.nih.gov/pubmed/25034946
Obesity gene NEGR1 associated with white matter integrity in healthy young adults. Dennis EL, Jahanshad N, Braskie MN, Warstadt NM, Hibar DP, Kohannim O, Nir TM, McMahon KL, de Zubicaray GI, Montgomery GW, Martin NG, Toga AW, Wright MJ, Thompson PM NeuroImage 25072390 Neuroimage 2014 Nov 15 https://www.ncbi.nlm.nih.gov/pubmed/25072390
Simultaneous Longitudinal Registration with Group-Wise Similarity Prior. Fleishman GM, Gutman BA, Fletcher PT, Thompson PM Information processing in medical imaging : proceedings of the ... conference 26213451 Inf Process Med Imaging 2015 https://www.ncbi.nlm.nih.gov/pubmed/26213451
Heritability of the network architecture of intrinsic brain functional connectivity. Sinclair B, Hansell NK, Blokland GA, Martin NG, Thompson PM, Breakspear M, de Zubicaray GI, Wright MJ, McMahon KL NeuroImage 26226088 Neuroimage 2015 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/26226088
Neurocognitive Deficits in Attention-Deficit/Hyperactivity Disorder With and Without Comorbid Oppositional Defiant Disorder. Noordermeer SDS, Luman M, Buitelaar JK, Hartman CA, Hoekstra PJ, Franke B, Faraone SV, Heslenfeld DJ, Oosterlaan J Journal of attention disorders 26486602 J Atten Disord 2020 Jul https://www.ncbi.nlm.nih.gov/pubmed/26486602
Entorhinal Cortex Thickness across the Human Lifespan. Hasan KM, Mwangi B, Cao B, Keser Z, Tustison NJ, Kochunov P, Frye RE, Savatic M, Soares J Journal of neuroimaging : official journal of the American Society of Neuroimaging 26565394 J Neuroimaging 2016 May https://www.ncbi.nlm.nih.gov/pubmed/26565394
Cortisol Reactivity to Stress and Its Association With White Matter Integrity in Adults With Schizophrenia. Nugent KL, Chiappelli J, Sampath H, Rowland LM, Thangavelu K, Davis B, Du X, Muellerklein F, Daughters S, Kochunov P, Hong LE Psychosomatic medicine 26186431 Psychosom Med 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/26186431
SPECTRAL GRAPH THEORY AND GRAPH ENERGY METRICS SHOW EVIDENCE FOR THE ALZHEIMER'S DISEASE DISCONNECTION SYNDROME IN APOE-4 RISK GENE CARRIERS. Daianu M, Mezher A, Jahanshad N, Hibar DP, Nir TM, Jack CR Jr, Weiner MW, Bernstein MA, Thompson PM Proceedings. IEEE International Symposium on Biomedical Imaging 26413205 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/26413205
Fused Lasso Screening Rules via the Monotonicity of Subdifferentials. Wang J, Fan W, Ye J IEEE transactions on pattern analysis and machine intelligence 26353128 IEEE Trans Pattern Anal Mach Intell 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/26353128
Similar Subgroups Based on Cognitive Performance Parse Heterogeneity in Adults With ADHD and Healthy Controls. Mostert JC, Hoogman M, Onnink AMH, van Rooij D, von Rhein D, van Hulzen KJE, Dammers J, Kan CC, Buitelaar JK, Norris DG, Franke B Journal of attention disorders 26374770 J Atten Disord 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/26374770
Mapping abnormal subcortical brain morphometry in an elderly HIV+ cohort. Wade BS, Valcour VG, Wendelken-Riegelhaupt L, Esmaeili-Firidouni P, Joshi SH, Gutman BA, Thompson PM NeuroImage. Clinical 26640768 Neuroimage Clin 2015 https://www.ncbi.nlm.nih.gov/pubmed/26640768
Characterising resting-state functional connectivity in a large sample of adults with ADHD. Mostert JC, Shumskaya E, Mennes M, Onnink AM, Hoogman M, Kan CC, Arias Vasquez A, Buitelaar J, Franke B, Norris DG Progress in neuro-psychopharmacology & biological psychiatry 26825495 Prog Neuropsychopharmacol Biol Psychiatry 2016 Jun 3 https://www.ncbi.nlm.nih.gov/pubmed/26825495
Imaging genetics in neurodevelopmental psychopathology. Klein M, van Donkelaar M, Verhoef E, Franke B American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 29984470 Am J Med Genet B Neuropsychiatr Genet 2017 Jul https://www.ncbi.nlm.nih.gov/pubmed/29984470
A neurobiological pathway to smoking in adolescence: TTC12-ANKK1-DRD2 variants and reward response. Macare C, Ducci F, Zhang Y, Ruggeri B, Jia T, Kaakinen M, Kalsi G, Charoen P, Casoni F, Peters J, Bromberg U, Hill M, Buxton J, Blakemore A, Veijola J, Büchel C, Banaschewski T, Bokde ALW, Conrod P, Flor H, Frouin V, Gallinat J, Garavan H, Gowland PA, Heinz A, Ittermann B, Lathrop M, Martinot JL, Paus T, Desrivières S, Munafò M, Järvelin MR, Schumann G, IMAGEN Consortium European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology 30104163 Eur Neuropsychopharmacol 2018 Oct https://www.ncbi.nlm.nih.gov/pubmed/30104163
The ventromedial prefrontal cortex: a putative locus for trait inattention. Albaugh MD, Potter AS Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 30194422 Neuropsychopharmacology 2019 Jan https://www.ncbi.nlm.nih.gov/pubmed/30194422
Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study. Whelan CD, Altmann A, Botía JA, Jahanshad N, Hibar DP, Absil J, Alhusaini S, Alvim MKM, Auvinen P, Bartolini E, Bergo FPG, Bernardes T, Blackmon K, Braga B, Caligiuri ME, Calvo A, Carr SJ, Chen J, Chen S, Cherubini A, David P, Domin M, Foley S, França W, Haaker G, Isaev D, Keller SS, Kotikalapudi R, Kowalczyk MA, Kuzniecky R, Langner S, Lenge M, Leyden KM, Liu M, Loi RQ, Martin P, Mascalchi M, Morita ME, Pariente JC, Rodríguez-Cruces R, Rummel C, Saavalainen T, Semmelroch MK, Severino M, Thomas RH, Tondelli M, Tortora D, Vaudano AE, Vivash L, von Podewils F, Wagner J, Weber B, Yao Y, Yasuda CL, Zhang G, Bargalló N, Bender B, Bernasconi N, Bernasconi A, Bernhardt BC, Blümcke I, Carlson C, Cavalleri GL, Cendes F, Concha L, Delanty N, Depondt C, Devinsky O, Doherty CP, Focke NK, Gambardella A, Guerrini R, Hamandi K, Jackson GD, Kälviäinen R, Kochunov P, Kwan P, Labate A, McDonald CR, Meletti S, O'Brien TJ, Ourselin S, Richardson MP, Striano P, Thesen T, Wiest R, Zhang J, Vezzani A, Ryten M, Thompson PM, Sisodiya SM Brain : a journal of neurology 29365066 Brain 2018 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/29365066
Cortical Abnormalities Associated With Pediatric and Adult Obsessive-Compulsive Disorder: Findings From the ENIGMA Obsessive-Compulsive Disorder Working Group. Boedhoe PSW, Schmaal L, Abe Y, Alonso P, Ameis SH, Anticevic A, Arnold PD, Batistuzzo MC, Benedetti F, Beucke JC, Bollettini I, Bose A, Brem S, Calvo A, Calvo R, Cheng Y, Cho KIK, Ciullo V, Dallaspezia S, Denys D, Feusner JD, Fitzgerald KD, Fouche JP, Fridgeirsson EA, Gruner P, Hanna GL, Hibar DP, Hoexter MQ, Hu H, Huyser C, Jahanshad N, James A, Kathmann N, Kaufmann C, Koch K, Kwon JS, Lazaro L, Lochner C, Marsh R, Martínez-Zalacaín I, Mataix-Cols D, Menchón JM, Minuzzi L, Morer A, Nakamae T, Nakao T, Narayanaswamy JC, Nishida S, Nurmi E, O'Neill J, Piacentini J, Piras F, Piras F, Reddy YCJ, Reess TJ, Sakai Y, Sato JR, Simpson HB, Soreni N, Soriano-Mas C, Spalletta G, Stevens MC, Szeszko PR, Tolin DF, van Wingen GA, Venkatasubramanian G, Walitza S, Wang Z, Yun JY, ENIGMA-OCD Working Group, Thompson PM, Stein DJ, van den Heuvel OA, ENIGMA OCD Working Group The American journal of psychiatry 29377733 Am J Psychiatry 2018 May 1 https://www.ncbi.nlm.nih.gov/pubmed/29377733
Peer victimization and its impact on adolescent brain development and psychopathology. Quinlan EB, Barker ED, Luo Q, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Desrivières S, Flor H, Frouin V, Garavan H, Chaarani B, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Smolka MN, Fröhner JH, Walter H, Whelan R, Schumann G, IMAGEN Consortium Molecular psychiatry 30542059 Mol Psychiatry 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/30542059
Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. Gunz P, Tilot AK, Wittfeld K, Teumer A, Shapland CY, van Erp TGM, Dannemann M, Vernot B, Neubauer S, Guadalupe T, Fernández G, Brunner HG, Enard W, Fallon J, Hosten N, Völker U, Profico A, Di Vincenzo F, Manzi G, Kelso J, St Pourcain B, Hublin JJ, Franke B, Pääbo S, Macciardi F, Grabe HJ, Fisher SE Current biology : CB 30554901 Curr Biol 2019 Jan 7 https://www.ncbi.nlm.nih.gov/pubmed/30554901
Elevated allostatic load early in the course of schizophrenia. Savransky A, Chiappelli J, Fisseha F, Wisner KM, Xiaoming D, Mirmomen SM, Jones AD, Adhikari BM, Bruce HA, Rowland LM, Hong LE Translational psychiatry 30420620 Transl Psychiatry 2018 Nov 12 https://www.ncbi.nlm.nih.gov/pubmed/30420620
ENIGMA MILITARY BRAIN INJURY: A COORDINATED META-ANALYSIS OF DIFFUSION MRI FROM MULTIPLE COHORTS. Dennis EL, Wilde EA, Newsome MR, Scheibel RS, Troyanskaya M, Velez C, Wade BSC, Drennon AM, York GE, Bigler ED, Abildskov TJ, Taylor BA, Jaramillo CA, Eapen B, Belanger H, Gupta V, Morey R, Haswell C, Levin HS, Hinds SR 2nd, Walker WC, Thompson PM, Tate DF Proceedings. IEEE International Symposium on Biomedical Imaging 30034577 Proc IEEE Int Symp Biomed Imaging 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/30034577
Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging. Petrov D, Gutman BA, Yu SJ, van Erp TGM, Turner JA, Schmaal L, Veltman D, Wang L, Alpert K, Isaev D, Zavaliangos-Petropulu A, Ching CRK, Calhoun V, Glahn D, Satterthwaite TD, Andreasen OA, Borgwardt S, Howells F, Groenewold N, Voineskos A, Radua J, Potkin SG, Crespo-Facorro B, Tordesillas-Gutiérrez D, Shen L, Lebedeva I, Spalletta G, Donohoe G, Kochunov P, Rosa PGP, James A, Dannlowski U, Baune BT, Aleman A, Gotlib IH, Walter H, Walter M, Soares JC, Ehrlich S, Gur RC, Doan NT, Agartz I, Westlye LT, Harrisberger F, Riecher-Rössler A, Uhlmann A, Stein DJ, Dickie EW, Pomarol-Clotet E, Fuentes-Claramonte P, Canales-Rodríguez EJ, Salvador R, Huang AJ, Roiz-Santiañez R, Cong S, Tomyshev A, Piras F, Vecchio D, Banaj N, Ciullo V, Hong E, Busatto G, Zanetti MV, Serpa MH, Cervenka S, Kelly S, Grotegerd D, Sacchet MD, Veer IM, Li M, Wu MJ, Irungu B, Walton E, Thompson PM Machine learning in medical imaging. MLMI (Workshop) 30035274 Mach Learn Med Imaging 2017 Sep https://www.ncbi.nlm.nih.gov/pubmed/30035274
Grey Matter Volume Differences Associated with Extremely Low Levels of Cannabis Use in Adolescence. Orr C, Spechler P, Cao Z, Albaugh M, Chaarani B, Mackey S, D'Souza D, Allgaier N, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Burke Quinlan E, Conrod P, Desrivières S, Flor H, Frouin V, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Millenet S, Fröhner JH, Radhakrishnan R, Smolka MN, Walter H, Whelan R, Schumann G, Potter A, Garavan H The Journal of neuroscience : the official journal of the Society for Neuroscience 30643026 J Neurosci 2019 Mar 6 https://www.ncbi.nlm.nih.gov/pubmed/30643026
An overlapping pattern of cerebral cortical thinning is associated with both positive symptoms and aggression in schizophrenia via the ENIGMA consortium. Wong TY, Radua J, Pomarol-Clotet E, Salvador R, Albajes-Eizagirre A, Solanes A, Canales-Rodriguez EJ, Guerrero-Pedraza A, Sarro S, Kircher T, Nenadic I, Krug A, Grotegerd D, Dannlowski U, Borgwardt S, Riecher-Rössler A, Schmidt A, Andreou C, Huber CG, Turner J, Calhoun V, Jiang W, Clark S, Walton E, Spalletta G, Banaj N, Piras F, Ciullo V, Vecchio D, Lebedeva I, Tomyshev AS, Kaleda V, Klushnik T, Filho GB, Zanetti MV, Serpa MH, Penteado Rosa PG, Hashimoto R, Fukunaga M, Richter A, Krämer B, Gruber O, Voineskos AN, Dickie EW, Tomecek D, Skoch A, Spaniel F, Hoschl C, Bertolino A, Bonvino A, Di Giorgio A, Holleran L, Ciufolini S, Marques TR, Dazzan P, Murray R, Lamsma J, Cahn W, van Haren N, Díaz-Zuluaga AM, Pineda-Zapata JA, Vargas C, López-Jaramillo C, van Erp TGM, Gur RC, Nickl-Jockschat T Psychological medicine 31615588 Psychol Med 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/31615588
Irritability and brain volume in adolescents: cross-sectional and longitudinal associations. Dennis EL, Humphreys KL, King LS, Thompson PM, Gotlib IH Social cognitive and affective neuroscience 31309969 Soc Cogn Affect Neurosci 2019 Jul 31 https://www.ncbi.nlm.nih.gov/pubmed/31309969
Functional network connectivity impairments and core cognitive deficits in schizophrenia. Adhikari BM, Hong LE, Sampath H, Chiappelli J, Jahanshad N, Thompson PM, Rowland LM, Calhoun VD, Du X, Chen S, Kochunov P Human brain mapping 31313441 Hum Brain Mapp 2019 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/31313441
New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders. Evangelou E, Gao H, Chu C, Ntritsos G, Blakeley P, Butts AR, Pazoki R, Suzuki H, Koskeridis F, Yiorkas AM, Karaman I, Elliott J, Luo Q, Aeschbacher S, Bartz TM, Baumeister SE, Braund PS, Brown MR, Brody JA, Clarke TK, Dimou N, Faul JD, Homuth G, Jackson AU, Kentistou KA, Joshi PK, Lemaitre RN, Lind PA, Lyytikäinen LP, Mangino M, Milaneschi Y, Nelson CP, Nolte IM, Perälä MM, Polasek O, Porteous D, Ratliff SM, Smith JA, Stančáková A, Teumer A, Tuominen S, Thériault S, Vangipurapu J, Whitfield JB, Wood A, Yao J, Yu B, Zhao W, Arking DE, Auvinen J, Liu C, Männikkö M, Risch L, Rotter JI, Snieder H, Veijola J, Blakemore AI, Boehnke M, Campbell H, Conen D, Eriksson JG, Grabe HJ, Guo X, van der Harst P, Hartman CA, Hayward C, Heath AC, Jarvelin MR, Kähönen M, Kardia SLR, Kühne M, Kuusisto J, Laakso M, Lahti J, Lehtimäki T, McIntosh AM, Mohlke KL, Morrison AC, Martin NG, Oldehinkel AJ, Penninx BWJH, Psaty BM, Raitakari OT, Rudan I, Samani NJ, Scott LJ, Spector TD, Verweij N, Weir DR, Wilson JF, Levy D, Tzoulaki I, Bell JD, Matthews PM, Rothenfluh A, Desrivières S, Schumann G, Elliott P Nature human behaviour 31358974 Nat Hum Behav 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/31358974
Decreased functional connectivity of hippocampal subregions and methylation of the NR3C1 gene in Han Chinese adults who lost their only child. Qi R, Luo Y, Zhang L, Weng Y, Surento W, Xu Q, Jahanshad N, Li L, Cao Z, Lu GM, Thompson PM Psychological medicine 31983347 Psychol Med 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/31983347
Mapping Subcortical Brain Alterations in 22q11.2 Deletion Syndrome: Effects of Deletion Size and Convergence With Idiopathic Neuropsychiatric Illness. Ching CRK, Gutman BA, Sun D, Villalon Reina J, Ragothaman A, Isaev D, Zavaliangos-Petropulu A, Lin A, Jonas RK, Kushan L, Pacheco-Hansen L, Vajdi A, Forsyth JK, Jalbrzikowski M, Bakker G, van Amelsvoort T, Antshel KM, Fremont W, Kates WR, Campbell LE, McCabe KL, Craig MC, Daly E, Gudbrandsen M, Murphy CM, Murphy DG, Murphy KC, Fiksinski A, Koops S, Vorstman J, Crowley TB, Emanuel BS, Gur RE, McDonald-McGinn DM, Roalf DR, Ruparel K, Schmitt JE, Zackai EH, Durdle CA, Goodrich-Hunsaker NJ, Simon TJ, Bassett AS, Butcher NJ, Chow EWC, Vila-Rodriguez F, Cunningham A, Doherty J, Linden DE, Moss H, Owen MJ, van den Bree M, Crossley NA, Repetto GM, Thompson PM, Bearden CE The American journal of psychiatry 32046535 Am J Psychiatry 2020 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/32046535
Distinct brain structure and behavior related to ADHD and conduct disorder traits. Bayard F, Nymberg Thunell C, Abé C, Almeida R, Banaschewski T, Barker G, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Conrod P, Stringaris A, Struve M, Penttilä J, Kappel V, Grimmer Y, Fadai T, van Noort B, Smolka MN, Vetter NC, Walter H, Whelan R, Schumann G, Petrovic P, IMAGEN Consortium Molecular psychiatry 30108313 Mol Psychiatry 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/30108313
Examination of the Neural Basis of Psychoticlike Experiences in Adolescence During Reward Processing. Papanastasiou E, Mouchlianitis E, Joyce DW, McGuire P, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Quinlan EB, Desrivières S, Flor H, Frouin V, Garavan H, Spechler P, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Papadopoulos Orfanos D, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Shergill S, IMAGEN Consortium JAMA psychiatry 30073329 JAMA Psychiatry 2018 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/30073329
Cross-sectional and longitudinal associations of family income-to-needs ratio with cortical and subcortical brain volume in adolescent boys and girls. King LS, Dennis EL, Humphreys KL, Thompson PM, Gotlib IH Developmental cognitive neuroscience 32479375 Dev Cogn Neurosci 2020 Aug https://www.ncbi.nlm.nih.gov/pubmed/32479375
Genotype-dependent epigenetic regulation of DLGAP2 in alcohol use and dependence. Meng W, Sjöholm LK, Kononenko O, Tay N, Zhang D, Sarkisyan D, Geske JR, Ing A, Qiu W, Watanabe H, Almamoun R, Frieling H, Bleich S, Cui D, Biernacka JM, Mayfield RD, Dang Y, Karpyak VM, Schumann G, IMAGEN Consortium, Bakalkin G, Ekström TJ, Rüegg J, Liu Y Molecular psychiatry 31745236 Mol Psychiatry 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/31745236
Subcortical surface morphometry in substance dependence: An ENIGMA addiction working group study. Chye Y, Mackey S, Gutman BA, Ching CRK, Batalla A, Blaine S, Brooks S, Caparelli EC, Cousijn J, Dagher A, Foxe JJ, Goudriaan AE, Hester R, Hutchison K, Jahanshad N, Kaag AM, Korucuoglu O, Li CR, London ED, Lorenzetti V, Luijten M, Martin-Santos R, Meda SA, Momenan R, Morales A, Orr C, Paulus MP, Pearlson G, Reneman L, Schmaal L, Sinha R, Solowij N, Stein DJ, Stein EA, Tang D, Uhlmann A, van Holst R, Veltman DJ, Verdejo-Garcia A, Wiers RW, Yücel M, Thompson PM, Conrod P, Garavan H Addiction biology 31746534 Addict Biol 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/31746534
The ENIGMA Stroke Recovery Working Group: Big data neuroimaging to study brain-behavior relationships after stroke. Liew SL, Zavaliangos-Petropulu A, Jahanshad N, Lang CE, Hayward KS, Lohse KR, Juliano JM, Assogna F, Baugh LA, Bhattacharya AK, Bigjahan B, Borich MR, Boyd LA, Brodtmann A, Buetefisch CM, Byblow WD, Cassidy JM, Conforto AB, Craddock RC, Dimyan MA, Dula AN, Ermer E, Etherton MR, Fercho KA, Gregory CM, Hadidchi S, Holguin JA, Hwang DH, Jung S, Kautz SA, Khlif MS, Khoshab N, Kim B, Kim H, Kuceyeski A, Lotze M, MacIntosh BJ, Margetis JL, Mohamed FB, Piras F, Ramos-Murguialday A, Richard G, Roberts P, Robertson AD, Rondina JM, Rost NS, Sanossian N, Schweighofer N, Seo NJ, Shiroishi MS, Soekadar SR, Spalletta G, Stinear CM, Suri A, Tang WKW, Thielman GT, Vecchio D, Villringer A, Ward NS, Werden E, Westlye LT, Winstein C, Wittenberg GF, Wong KA, Yu C, Cramer SC, Thompson PM Human brain mapping 32310331 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32310331
Neurobehavioural characterisation and stratification of reinforcement-related behaviour. Jia T, Ing A, Quinlan EB, Tay N, Luo Q, Francesca B, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Desrivières S, Feng J, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, IMAGEN Consortium Nature human behaviour 32313235 Nat Hum Behav 2020 May https://www.ncbi.nlm.nih.gov/pubmed/32313235
Cortical and subcortical brain structure in generalized anxiety disorder: findings from 28 research sites in the ENIGMA-Anxiety Working Group. Harrewijn A, Cardinale EM, Groenewold NA, Bas-Hoogendam JM, Aghajani M, Hilbert K, Cardoner N, Porta-Casteràs D, Gosnell S, Salas R, Jackowski AP, Pan PM, Salum GA, Blair KS, Blair JR, Hammoud MZ, Milad MR, Burkhouse KL, Phan KL, Schroeder HK, Strawn JR, Beesdo-Baum K, Jahanshad N, Thomopoulos SI, Buckner R, Nielsen JA, Smoller JW, Soares JC, Mwangi B, Wu MJ, Zunta-Soares GB, Assaf M, Diefenbach GJ, Brambilla P, Maggioni E, Hofmann D, Straube T, Andreescu C, Berta R, Tamburo E, Price RB, Manfro GG, Agosta F, Canu E, Cividini C, Filippi M, Kostić M, Munjiza Jovanovic A, Alberton BAV, Benson B, Freitag GF, Filippi CA, Gold AL, Leibenluft E, Ringlein GV, Werwath KE, Zwiebel H, Zugman A, Grabe HJ, Van der Auwera S, Wittfeld K, Völzke H, Bülow R, Balderston NL, Ernst M, Grillon C, Mujica-Parodi LR, van Nieuwenhuizen H, Critchley HD, Makovac E, Mancini M, Meeten F, Ottaviani C, Ball TM, Fonzo GA, Paulus MP, Stein MB, Gur RE, Gur RC, Kaczkurkin AN, Larsen B, Satterthwaite TD, Harper J, Myers M, Perino MT, Sylvester CM, Yu Q, Lueken U, Veltman DJ, Thompson PM, Stein DJ, Van der Wee NJA, Winkler AM, Pine DS Translational psychiatry 34599145 Transl Psychiatry 2021 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/34599145
Brain Signatures During Reward Anticipation Predict Persistent Attention-Deficit/Hyperactivity Disorder Symptoms. Chen D, Jia T, Cheng W, Cao M, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Desrivières S, Flor H, Grigis A, Garavan H, Gowland PA, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Nees F, Orfanos DP, Paus T, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Robbins TW, Sahakian BJ, Schumann G, Feng J, IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 34954028 J Am Acad Child Adolesc Psychiatry 2022 Aug https://www.ncbi.nlm.nih.gov/pubmed/34954028
The thalamus and its subnuclei-a gateway to obsessive-compulsive disorder. Weeland CJ, Kasprzak S, de Joode NT, Abe Y, Alonso P, Ameis SH, Anticevic A, Arnold PD, Balachander S, Banaj N, Bargallo N, Batistuzzo MC, Benedetti F, Beucke JC, Bollettini I, Brecke V, Brem S, Cappi C, Cheng Y, Cho KIK, Costa DLC, Dallaspezia S, Denys D, Eng GK, Ferreira S, Feusner JD, Fontaine M, Fouche JP, Grazioplene RG, Gruner P, He M, Hirano Y, Hoexter MQ, Huyser C, Hu H, Jaspers-Fayer F, Kathmann N, Kaufmann C, Kim M, Koch K, Bin Kwak Y, Kwon JS, Lazaro L, Li CR, Lochner C, Marsh R, Martínez-Zalacaín I, Mataix-Cols D, Menchón JM, Minnuzi L, Moreira PS, Morgado P, Nakagawa A, Nakamae T, Narayanaswamy JC, Nurmi EL, Ortiz AE, Pariente JC, Piacentini J, Picó-Pérez M, Piras F, Piras F, Pittenger C, Reddy YCJ, Rodriguez-Manrique D, Sakai Y, Shimizu E, Shivakumar V, Simpson HB, Soreni N, Soriano-Mas C, Sousa N, Spalletta G, Stern ER, Stevens MC, Stewart SE, Szeszko PR, Takahashi J, Tanamatis T, Tang J, Thorsen AL, Tolin D, van der Werf YD, van Marle H, van Wingen GA, Vecchio D, Venkatasubramanian G, Walitza S, Wang J, Wang Z, Watanabe A, Wolters LH, Xu X, Yun JY, Zhao Q, ENIGMA OCD Working Group, White T, Thompson PM, Stein DJ, van den Heuvel OA, Vriend C Translational psychiatry 35190533 Transl Psychiatry 2022 Feb 21 https://www.ncbi.nlm.nih.gov/pubmed/35190533
Associations of delay discounting and drinking trajectories from ages 14 to 22. Fröhner JH, Ripke S, Jurk S, Li SC, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Papadopoulos Orfanos D, Poustka L, Hohmann S, Walter H, Whelan R, Schumann G, Smolka MN, IMAGEN Consortium Alcoholism, clinical and experimental research 35257381 Alcohol Clin Exp Res 2022 Apr https://www.ncbi.nlm.nih.gov/pubmed/35257381
Age-dependent white matter disruptions after military traumatic brain injury: Multivariate analysis results from ENIGMA brain injury. Bouchard HC, Sun D, Dennis EL, Newsome MR, Disner SG, Elman J, Silva A, Velez C, Irimia A, Davenport ND, Sponheim SR, Franz CE, Kremen WS, Coleman MJ, Williams MW, Geuze E, Koerte IK, Shenton ME, Adamson MM, Coimbra R, Grant G, Shutter L, George MS, Zafonte RD, McAllister TW, Stein MB, Thompson PM, Wilde EA, Tate DF, Sotiras A, Morey RA Human brain mapping 35289463 Hum Brain Mapp 2022 Jun 1 https://www.ncbi.nlm.nih.gov/pubmed/35289463
Brain Structure and Degeneration Staging in Friedreich Ataxia: Magnetic Resonance Imaging Volumetrics from the ENIGMA-Ataxia Working Group. Harding IH, Chopra S, Arrigoni F, Boesch S, Brunetti A, Cocozza S, Corben LA, Deistung A, Delatycki M, Diciotti S, Dogan I, Evangelisti S, França MC Jr, Göricke SL, Georgiou-Karistianis N, Gramegna LL, Henry PG, Hernandez-Castillo CR, Hutter D, Jahanshad N, Joers JM, Lenglet C, Lodi R, Manners DN, Martinez ARM, Martinuzzi A, Marzi C, Mascalchi M, Nachbauer W, Pane C, Peruzzo D, Pisharady PK, Pontillo G, Reetz K, Rezende TJR, Romanzetti S, Saccà F, Scherfler C, Schulz JB, Stefani A, Testa C, Thomopoulos SI, Timmann D, Tirelli S, Tonon C, Vavla M, Egan GF, Thompson PM Annals of neurology 34435700 Ann Neurol 2021 Oct https://www.ncbi.nlm.nih.gov/pubmed/34435700
Cortical and subcortical neuroanatomical signatures of schizotypy in 3004 individuals assessed in a worldwide ENIGMA study. Kirschner M, Hodzic-Santor B, Antoniades M, Nenadic I, Kircher T, Krug A, Meller T, Grotegerd D, Fornito A, Arnatkeviciute A, Bellgrove MA, Tiego J, Dannlowski U, Koch K, Hülsmann C, Kugel H, Enneking V, Klug M, Leehr EJ, Böhnlein J, Gruber M, Mehler D, DeRosse P, Moyett A, Baune BT, Green M, Quidé Y, Pantelis C, Chan R, Wang Y, Ettinger U, Debbané M, Derome M, Gaser C, Besteher B, Diederen K, Spencer TJ, Fletcher P, Rössler W, Smigielski L, Kumari V, Premkumar P, Park HRP, Wiebels K, Lemmers-Jansen I, Gilleen J, Allen P, Kozhuharova P, Marsman JB, Lebedeva I, Tomyshev A, Mukhorina A, Kaiser S, Fett AK, Sommer I, Schuite-Koops S, Paquola C, Larivière S, Bernhardt B, Dagher A, Grant P, van Erp TGM, Turner JA, Thompson PM, Aleman A, Modinos G Molecular psychiatry 34707236 Mol Psychiatry 2022 Feb https://www.ncbi.nlm.nih.gov/pubmed/34707236
Subtly altered topological asymmetry of brain structural covariance networks in autism spectrum disorder across 43 datasets from the ENIGMA consortium. Sha Z, van Rooij D, Anagnostou E, Arango C, Auzias G, Behrmann M, Bernhardt B, Bolte S, Busatto GF, Calderoni S, Calvo R, Daly E, Deruelle C, Duan M, Duran FLS, Durston S, Ecker C, Ehrlich S, Fair D, Fedor J, Fitzgerald J, Floris DL, Franke B, Freitag CM, Gallagher L, Glahn DC, Haar S, Hoekstra L, Jahanshad N, Jalbrzikowski M, Janssen J, King JA, Lazaro L, Luna B, McGrath J, Medland SE, Muratori F, Murphy DGM, Neufeld J, O'Hearn K, Oranje B, Parellada M, Pariente JC, Postema MC, Remnelius KL, Retico A, Rosa PGP, Rubia K, Shook D, Tammimies K, Taylor MJ, Tosetti M, Wallace GL, Zhou F, Thompson PM, Fisher SE, Buitelaar JK, Francks C Molecular psychiatry 35136228 Mol Psychiatry 2022 Apr https://www.ncbi.nlm.nih.gov/pubmed/35136228
Virtual Ontogeny of Cortical Growth Preceding Mental Illness. Patel Y, Shin J, Abé C, Agartz I, Alloza C, Alnæs D, Ambrogi S, Antonucci LA, Arango C, Arolt V, Auzias G, Ayesa-Arriola R, Banaj N, Banaschewski T, Bandeira C, Başgöze Z, Cupertino RB, Bau CHD, Bauer J, Baumeister S, Bernardoni F, Bertolino A, Bonnin CDM, Brandeis D, Brem S, Bruggemann J, Bülow R, Bustillo JR, Calderoni S, Calvo R, Canales-Rodríguez EJ, Cannon DM, Carmona S, Carr VJ, Catts SV, Chenji S, Chew QH, Coghill D, Connolly CG, Conzelmann A, Craven AR, Crespo-Facorro B, Cullen K, Dahl A, Dannlowski U, Davey CG, Deruelle C, Díaz-Caneja CM, Dohm K, Ehrlich S, Epstein J, Erwin-Grabner T, Eyler LT, Fedor J, Fitzgerald J, Foran W, Ford JM, Fortea L, Fuentes-Claramonte P, Fullerton J, Furlong L, Gallagher L, Gao B, Gao S, Goikolea JM, Gotlib I, Goya-Maldonado R, Grabe HJ, Green M, Grevet EH, Groenewold NA, Grotegerd D, Gruber O, Haavik J, Hahn T, Harrison BJ, Heindel W, Henskens F, Heslenfeld DJ, Hilland E, Hoekstra PJ, Hohmann S, Holz N, Howells FM, Ipser JC, Jahanshad N, Jakobi B, Jansen A, Janssen J, Jonassen R, Kaiser A, Kaleda V, Karantonis J, King JA, Kircher T, Kochunov P, Koopowitz SM, Landén M, Landrø NI, Lawrie S, Lebedeva I, Luna B, Lundervold AJ, MacMaster FP, Maglanoc LA, Mathalon DH, McDonald C, McIntosh A, Meinert S, Michie PT, Mitchell P, Moreno-Alcázar A, Mowry B, Muratori F, Nabulsi L, Nenadić I, O'Gorman Tuura R, Oosterlaan J, Overs B, Pantelis C, Parellada M, Pariente JC, Pauli P, Pergola G, Piarulli FM, Picon F, Piras F, Pomarol-Clotet E, Pretus C, Quidé Y, Radua J, Ramos-Quiroga JA, Rasser PE, Reif A, Retico A, Roberts G, Rossell S, Rovaris DL, Rubia K, Sacchet M, Salavert J, Salvador R, Sarró S, Sawa A, Schall U, Scott R, Selvaggi P, Silk T, Sim K, Skoch A, Spalletta G, Spaniel F, Stein DJ, Steinsträter O, Stolicyn A, Takayanagi Y, Tamm L, Tavares M, Teumer A, Thiel K, Thomopoulos SI, Tomecek D, Tomyshev AS, Tordesillas-Gutiérrez D, Tosetti M, Uhlmann A, Van Rheenen T, Vazquez-Bourgón J, Vernooij MW, Vieta E, Vilarroya O, Weickert C, Weickert T, Westlye LT, Whalley H, Willinger D, Winter A, Wittfeld K, Yang TT, Yoncheva Y, Zijlmans JL, Hoogman M, Franke B, van Rooij D, Buitelaar J, Ching CRK, Andreassen OA, Pozzi E, Veltman D, Schmaal L, van Erp TGM, Turner J, Castellanos FX, Pausova Z, Thompson P, Paus T Biological psychiatry 35489875 Biol Psychiatry 2022 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/35489875
Bayesian causal network modeling suggests adolescent cannabis use accelerates prefrontal cortical thinning. Owens MM, Albaugh MD, Allgaier N, Yuan D, Robert G, Cupertino RB, Spechler PA, Juliano A, Hahn S, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Lemaitre H, Paus T, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Mackey S, Schumann G, Garavan H, IMAGEN Consortium Translational psychiatry 35523763 Transl Psychiatry 2022 May 6 https://www.ncbi.nlm.nih.gov/pubmed/35523763
Predicting development of adolescent drinking behaviour from whole brain structure at 14 years of age. Kühn S, Mascharek A, Banaschewski T, Bodke A, Bromberg U, Büchel C, Quinlan EB, Desrivieres S, Flor H, Grigis A, Garavan H, Gowland PA, Heinz A, Ittermann B, Martinot JL, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Lindenberger U, Gallinat J, IMAGEN Consortium eLife 31262402 Elife 2019 Jul 2 https://www.ncbi.nlm.nih.gov/pubmed/31262402
Brain structural abnormalities in obesity: relation to age, genetic risk, and common psychiatric disorders : Evidence through univariate and multivariate mega-analysis including 6420 participants from the ENIGMA MDD working group. Opel N, Thalamuthu A, Milaneschi Y, Grotegerd D, Flint C, Leenings R, Goltermann J, Richter M, Hahn T, Woditsch G, Berger K, Hermesdorf M, McIntosh A, Whalley HC, Harris MA, MacMaster FP, Walter H, Veer IM, Frodl T, Carballedo A, Krug A, Nenadic I, Kircher T, Aleman A, Groenewold NA, Stein DJ, Soares JC, Zunta-Soares GB, Mwangi B, Wu MJ, Walter M, Li M, Harrison BJ, Davey CG, Cullen KR, Klimes-Dougan B, Mueller BA, Sämann PG, Penninx B, Nawijn L, Veltman DJ, Aftanas L, Brak IV, Filimonova EA, Osipov EA, Reneman L, Schrantee A, Grabe HJ, Van der Auwera S, Wittfeld K, Hosten N, Völzke H, Sim K, Gotlib IH, Sacchet MD, Lagopoulos J, Hatton SN, Hickie I, Pozzi E, Thompson PM, Jahanshad N, Schmaal L, Baune BT, Dannlowski U Molecular psychiatry 32467648 Mol Psychiatry 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/32467648
ENIGMA MDD: seven years of global neuroimaging studies of major depression through worldwide data sharing. Schmaal L, Pozzi E, C Ho T, van Velzen LS, Veer IM, Opel N, Van Someren EJW, Han LKM, Aftanas L, Aleman A, Baune BT, Berger K, Blanken TF, Capitão L, Couvy-Duchesne B, R Cullen K, Dannlowski U, Davey C, Erwin-Grabner T, Evans J, Frodl T, Fu CHY, Godlewska B, Gotlib IH, Goya-Maldonado R, Grabe HJ, Groenewold NA, Grotegerd D, Gruber O, Gutman BA, Hall GB, Harrison BJ, Hatton SN, Hermesdorf M, Hickie IB, Hilland E, Irungu B, Jonassen R, Kelly S, Kircher T, Klimes-Dougan B, Krug A, Landrø NI, Lagopoulos J, Leerssen J, Li M, Linden DEJ, MacMaster FP, M McIntosh A, Mehler DMA, Nenadić I, Penninx BWJH, Portella MJ, Reneman L, Rentería ME, Sacchet MD, G Sämann P, Schrantee A, Sim K, Soares JC, Stein DJ, Tozzi L, van Der Wee NJA, van Tol MJ, Vermeiren R, Vives-Gilabert Y, Walter H, Walter M, Whalley HC, Wittfeld K, Whittle S, Wright MJ, Yang TT, Zarate C Jr, Thomopoulos SI, Jahanshad N, Thompson PM, Veltman DJ Translational psychiatry 32472038 Transl Psychiatry 2020 May 29 https://www.ncbi.nlm.nih.gov/pubmed/32472038
Association of Copy Number Variation of the 15q11.2 BP1-BP2 Region With Cortical and Subcortical Morphology and Cognition. Writing Committee for the ENIGMA-CNV Working Group, van der Meer D, Sønderby IE, Kaufmann T, Walters GB, Abdellaoui A, Ames D, Amunts K, Andersson M, Armstrong NJ, Bernard M, Blackburn NB, Blangero J, Boomsma DI, Brodaty H, Brouwer RM, Bülow R, Cahn W, Calhoun VD, Caspers S, Cavalleri GL, Ching CRK, Cichon S, Ciufolini S, Corvin A, Crespo-Facorro B, Curran JE, Dalvie S, Dazzan P, de Geus EJC, de Zubicaray GI, de Zwarte SMC, Delanty N, den Braber A, Desrivieres S, Di Forti M, Doherty JL, Donohoe G, Ehrlich S, Eising E, Espeseth T, Fisher SE, Fladby T, Frei O, Frouin V, Fukunaga M, Gareau T, Glahn DC, Grabe HJ, Groenewold NA, Gústafsson Ó, Haavik J, Haberg AK, Hashimoto R, Hehir-Kwa JY, Hibar DP, Hillegers MHJ, Hoffmann P, Holleran L, Hottenga JJ, Hulshoff Pol HE, Ikeda M, Jacquemont S, Jahanshad N, Jockwitz C, Johansson S, Jönsson EG, Kikuchi M, Knowles EEM, Kwok JB, Le Hellard S, Linden DEJ, Liu J, Lundervold A, Lundervold AJ, Martin NG, Mather KA, Mathias SR, McMahon KL, McRae AF, Medland SE, Moberget T, Moreau C, Morris DW, Mühleisen TW, Murray RM, Nordvik JE, Nyberg L, Olde Loohuis LM, Ophoff RA, Owen MJ, Paus T, Pausova Z, Peralta JM, Pike B, Prieto C, Quinlan EB, Reinbold CS, Reis Marques T, Rucker JJH, Sachdev PS, Sando SB, Schofield PR, Schork AJ, Schumann G, Shin J, Shumskaya E, Silva AI, Sisodiya SM, Steen VM, Stein DJ, Strike LT, Tamnes CK, Teumer A, Thalamuthu A, Tordesillas-Gutiérrez D, Uhlmann A, Úlfarsson MÖ, van 't Ent D, van den Bree MBM, Vassos E, Wen W, Wittfeld K, Wright MJ, Zayats T, Dale AM, Djurovic S, Agartz I, Westlye LT, Stefánsson H, Stefánsson K, Thompson PM, Andreassen OA JAMA psychiatry 31665216 JAMA Psychiatry 2020 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/31665216
Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults. Hofer E, Roshchupkin GV, Adams HHH, Knol MJ, Lin H, Li S, Zare H, Ahmad S, Armstrong NJ, Satizabal CL, Bernard M, Bis JC, Gillespie NA, Luciano M, Mishra A, Scholz M, Teumer A, Xia R, Jian X, Mosley TH, Saba Y, Pirpamer L, Seiler S, Becker JT, Carmichael O, Rotter JI, Psaty BM, Lopez OL, Amin N, van der Lee SJ, Yang Q, Himali JJ, Maillard P, Beiser AS, DeCarli C, Karama S, Lewis L, Harris M, Bastin ME, Deary IJ, Veronica Witte A, Beyer F, Loeffler M, Mather KA, Schofield PR, Thalamuthu A, Kwok JB, Wright MJ, Ames D, Trollor J, Jiang J, Brodaty H, Wen W, Vernooij MW, Hofman A, Uitterlinden AG, Niessen WJ, Wittfeld K, Bülow R, Völker U, Pausova Z, Bruce Pike G, Maingault S, Crivello F, Tzourio C, Amouyel P, Mazoyer B, Neale MC, Franz CE, Lyons MJ, Panizzon MS, Andreassen OA, Dale AM, Logue M, Grasby KL, Jahanshad N, Painter JN, Colodro-Conde L, Bralten J, Hibar DP, Lind PA, Pizzagalli F, Stein JL, Thompson PM, Medland SE, ENIGMA consortium, Sachdev PS, Kremen WS, Wardlaw JM, Villringer A, van Duijn CM, Grabe HJ, Longstreth WT Jr, Fornage M, Paus T, Debette S, Ikram MA, Schmidt H, Schmidt R, Seshadri S Nature communications 32963231 Nat Commun 2020 Sep 22 https://www.ncbi.nlm.nih.gov/pubmed/32963231
Atlas55+: Brain Functional Atlas of Resting-State Networks for Late Adulthood. Doucet GE, Labache L, Thompson PM, Joliot M, Frangou S, Alzheimer’s Disease Neuroimaging Initiative Cerebral cortex (New York, N.Y. : 1991) 33188411 Cereb Cortex 2021 Feb 5 https://www.ncbi.nlm.nih.gov/pubmed/33188411
In vivo hippocampal subfield volumes in bipolar disorder-A mega-analysis from The Enhancing Neuro Imaging Genetics through Meta-Analysis Bipolar Disorder Working Group. Haukvik UK, Gurholt TP, Nerland S, Elvsåshagen T, Akudjedu TN, Alda M, Alnaes D, Alonso-Lana S, Bauer J, Baune BT, Benedetti F, Berk M, Bettella F, Bøen E, Bonnín CM, Brambilla P, Canales-Rodríguez EJ, Cannon DM, Caseras X, Dandash O, Dannlowski U, Delvecchio G, Díaz-Zuluaga AM, van Erp TGM, Fatjó-Vilas M, Foley SF, Förster K, Fullerton JM, Goikolea JM, Grotegerd D, Gruber O, Haarman BCM, Haatveit B, Hajek T, Hallahan B, Harris M, Hawkins EL, Howells FM, Hülsmann C, Jahanshad N, Jørgensen KN, Kircher T, Krämer B, Krug A, Kuplicki R, Lagerberg TV, Lancaster TM, Lenroot RK, Lonning V, López-Jaramillo C, Malt UF, McDonald C, McIntosh AM, McPhilemy G, van der Meer D, Melle I, Melloni EMT, Mitchell PB, Nabulsi L, Nenadić I, Oertel V, Oldani L, Opel N, Otaduy MCG, Overs BJ, Pineda-Zapata JA, Pomarol-Clotet E, Radua J, Rauer L, Redlich R, Repple J, Rive MM, Roberts G, Ruhe HG, Salminen LE, Salvador R, Sarró S, Savitz J, Schene AH, Sim K, Soeiro-de-Souza MG, Stäblein M, Stein DJ, Stein F, Tamnes CK, Temmingh HS, Thomopoulos SI, Veltman DJ, Vieta E, Waltemate L, Westlye LT, Whalley HC, Sämann PG, Thompson PM, Ching CRK, Andreassen OA, Agartz I, ENIGMA Bipolar Disorder Working Group Human brain mapping 33073925 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33073925
Intracranial and subcortical volumes in adolescents with early-onset psychosis: A multisite mega-analysis from the ENIGMA consortium. Gurholt TP, Lonning V, Nerland S, Jørgensen KN, Haukvik UK, Alloza C, Arango C, Barth C, Bearden CE, Berk M, Bohman H, Dandash O, Díaz-Caneja CM, Edbom CT, van Erp TGM, Fett AJ, Frangou S, Goldstein BI, Grigorian A, Jahanshad N, James AC, Janssen J, Johannessen C, Karlsgodt KH, Kempton MJ, Kochunov P, Krabbendam L, Kyriakopoulos M, Lundberg M, MacIntosh BJ, Rund BR, Smelror RE, Sultan A, Tamnes CK, Thomopoulos SI, Vajdi A, Wedervang-Resell K, Myhre AM, Andreassen OA, Thompson PM, Agartz I, ENIGMA-EOP Working Group Human brain mapping 33017498 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33017498
Patch-Based Surface Morphometry Feature Selection with Federated Group Lasso Regression. Wu J, Zhang J, Li Q, Su Y, Chen K, Reiman EM, Wang J, Lepore N, Ye J, Thompson PM, Wang Y Proceedings of SPIE--the International Society for Optical Engineering 33250550 Proc SPIE Int Soc Opt Eng 2020 Oct https://www.ncbi.nlm.nih.gov/pubmed/33250550
Common and gender-specific associations with cocaine use on gray matter volume: Data from the ENIGMA addiction working group. Rabin RA, Mackey S, Parvaz MA, Cousijn J, Li CS, Pearlson G, Schmaal L, Sinha R, Stein E, Veltman D, Thompson PM, Conrod P, Garavan H, Alia-Klein N, Goldstein RZ Human brain mapping 32857473 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/32857473
Neural Correlates of Adolescent Irritability and Its Comorbidity With Psychiatric Disorders. Chaarani B, Kan KJ, Mackey S, Spechler PA, Potter A, Banaschewski T, Millenet S, Bokde ALW, Bromberg U, Büchel C, Cattrell A, Conrod PJ, Desrivières S, Flor H, Frouin V, Gallinat J, Gowland P, Heinz A, Ittermann B, Martinot JL, Nees F, Paus T, Poustka L, Smolka MN, Walter H, Whelan R, Stringaris A, Higgins ST, Schumann G, Garavan H, Althoff RR, IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 32860907 J Am Acad Child Adolesc Psychiatry 2020 Dec https://www.ncbi.nlm.nih.gov/pubmed/32860907
The ENIGMA sports injury working group:- an international collaboration to further our understanding of sport-related brain injury. Koerte IK, Esopenko C, Hinds SR 2nd, Shenton ME, Bonke EM, Bazarian JJ, Bickart KC, Bigler ED, Bouix S, Buckley TA, Choe MC, Echlin PS, Gill J, Giza CC, Hayes J, Hodges CB, Irimia A, Johnson PK, Kenney K, Levin HS, Lin AP, Lindsey HM, Lipton ML, Max JE, Mayer AR, Meier TB, Merchant-Borna K, Merkley TL, Mills BD, Newsome MR, Porfido T, Stephens JA, Tartaglia MC, Ware AL, Zafonte RD, Zeineh MM, Thompson PM, Tate DF, Dennis EL, Wilde EA, Baron D Brain imaging and behavior 32720179 Brain Imaging Behav 2021 Apr https://www.ncbi.nlm.nih.gov/pubmed/32720179
A robust brain network for sustained attention from adolescence to adulthood that predicts later substance use. Weng Y, Kruschwitz J, Rueda-Delgado LM, Ruddy K, Boyle R, Franzen L, Serin E, Nweze T, Hanson J, Smyth A, Farnan T, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, McGrath J, Nees F, Orfanos DP, Paus T, Poustka L, Holz N, Fröhner JH, Smolka MN, Vaidya N, Schumann G, Walter H, Whelan R, IMAGEN Consortium bioRxiv : the preprint server for biology 38617224 bioRxiv 2024 Jun 17 https://www.ncbi.nlm.nih.gov/pubmed/38617224
Regional patterns of human cortex development correlate with underlying neurobiology. Lotter LD, Saberi A, Hansen JY, Misic B, Paquola C, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillère ML, Artiges E, Papadopoulos Orfanos D, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, IMAGEN Consortium, Nees F, Banaschewski T, Eickhoff SB, Dukart J Nature communications 39284858 Nat Commun 2024 Sep 12 https://www.ncbi.nlm.nih.gov/pubmed/39284858
Variation in moment-to-moment brain state engagement changes across development and contributes to individual differences in executive function. Ye J, Tejavibulya L, Dai W, Cope LM, Hardee JE, Heitzeg MM, Lichenstein S, Yip SW, Banaschewski T, Baker GJ, Bokde ALW, Brühl R, Desrivières S, Flor H, Gowland P, Grigis A, Heinz A, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Holz N, Baeuchl C, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Garavan H, Chaarani B, Gee DG, Baskin-Sommers A, Casey BJ, IMAGEN consortium, Scheinost D bioRxiv : the preprint server for biology 39314397 bioRxiv 2024 Sep 11 https://www.ncbi.nlm.nih.gov/pubmed/39314397
Unraveling robust brain-behavior links of depressive complaints through granular network models for understanding heterogeneity. Freichel R, Lenartowicz A, Douw L, Kruschwitz JD, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Holz N, Baeuchl C, Smolka MN, Vaidya N, Whelan R, Frouin V, Schumann G, IMAGEN Consortium, Walter H, Blanken TF Journal of affective disorders 38754596 J Affect Disord 2024 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/38754596
Population clustering of structural brain aging and its association with brain development. Duan H, Shi R, Kang J, Banaschewski T, Bokde ALW, Büchel C, Desrivières S, Flor H, Grigis A, Garavan H, Gowland PA, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Papadopoulos Orfanos D, Poustka L, Hohmann S, Holz N, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Lin X, Feng J, IMAGEN consortium medRxiv : the preprint server for health sciences 38260410 medRxiv 2024 Jun 26 https://www.ncbi.nlm.nih.gov/pubmed/38260410
A biologically informed polygenic score of neuronal plasticity moderates the association between cognitive aptitudes and cortical thickness in adolescents. Navarri X, Vosberg DE, Shin J, Richer L, Leonard G, Pike GB, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, Pausova Z, Paus T Developmental cognitive neuroscience 36963244 Dev Cogn Neurosci 2023 Apr https://www.ncbi.nlm.nih.gov/pubmed/36963244
Ensemble classification of autism spectrum disorder using structural magnetic resonance imaging features. Zhang-James Y, Buitelaar JK, ENIGMA‐ASD Working Group, van Rooij D, Faraone SV JCPP advances 37431438 JCPP Adv 2021 Oct https://www.ncbi.nlm.nih.gov/pubmed/37431438
A shared neural basis underlying psychiatric comorbidity. Xie C, Xiang S, Shen C, Peng X, Kang J, Li Y, Cheng W, He S, Bobou M, Broulidakis MJ, van Noort BM, Zhang Z, Robinson L, Vaidya N, Winterer J, Zhang Y, King S, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Lemaître H, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Fröhner JH, Schmidt U, Sinclair J, Smolka MN, Stringaris A, Walter H, Whelan R, Desrivières S, Sahakian BJ, Robbins TW, Schumann G, Jia T, Feng J, IMAGEN Consortium, STRATIFY/ESTRA Consortium, ZIB Consortium Nature medicine 37095248 Nat Med 2023 May https://www.ncbi.nlm.nih.gov/pubmed/37095248
Normative modeling of brain morphometry in Clinical High-Risk for Psychosis. Haas SS, Ge R, Agartz I, Amminger GP, Andreassen OA, Bachman P, Baeza I, Choi S, Colibazzi T, Cropley VL, de la Fuente-Sandoval C, Ebdrup BH, Fortea A, Fusar-Poli P, Glenthøj BY, Glenthøj LB, Haut KM, Hayes RA, Heekeren K, Hooker CI, Hwang WJ, Jahanshad N, Kaess M, Kasai K, Katagiri N, Kim M, Kindler J, Koike S, Kristensen TD, Kwon JS, Lawrie SM, Lee J, Lemmers-Jansen IL, Lin A, Ma X, Mathalon DH, McGuire P, Michel C, Mizrahi R, Mizuno M, Møller P, Mora-Durán R, Nelson B, Nemoto T, Nordentoft M, Nordholm D, Omelchenko MA, Pantelis C, Pariente JC, Raghava JM, Reyes-Madrigal F, Røssberg JI, Rössler W, Salisbury DF, Sasabayashi D, Schall U, Smigielski L, Sugranyes G, Suzuki M, Takahashi T, Tamnes CK, Theodoridou A, Thomopoulos SI, Thompson PM, Tomyshev AS, Uhlhaas PJ, Værnes TG, van Amelsvoort TA, van Erp TG, Waltz JA, Wenneberg C, Westlye LT, Wood SJ, Zhou JH, Hernaus D, Jalbrzikowski M, Kahn RS, Corcoran CM, Frangou S, ENIGMA Clinical High Risk for Psychosis Working Group bioRxiv : the preprint server for biology 36711551 bioRxiv 2023 Jan 18 https://www.ncbi.nlm.nih.gov/pubmed/36711551
Right Prefrontal Cortical Thickness Is Associated With Response to Cognitive-Behavioral Therapy in Children With Obsessive-Compulsive Disorder. Bertolín S, Alonso P, Martínez-Zalacaín I, Menchón JM, Jimenez-Murcia S, Baker JT, Bargalló N, Batistuzzo MC, Boedhoe PSW, Brennan BP, Feusner JD, Fitzgerald KD, Fontaine M, Hansen B, Hirano Y, Hoexter MQ, Huyser C, Jahanshad N, Jaspers-Fayer F, Kuno M, Kvale G, Lazaro L, Machado-Sousa M, Marsh R, Morgado P, Nakagawa A, Norman L, Nurmi EL, O'Neill J, Ortiz AE, Perriello C, Piacentini J, Picó-Pérez M, Shavitt RG, Shimizu E, Simpson HB, Stewart SE, Thomopoulos SI, Thorsen AL, Walitza S, Wolters LH, ENIGMA-OCD Working Group, Thompson PM, van den Heuvel OA, Stein DJ, Soriano-Mas C Journal of the American Academy of Child and Adolescent Psychiatry 36526161 J Am Acad Child Adolesc Psychiatry 2023 Apr https://www.ncbi.nlm.nih.gov/pubmed/36526161
Structural covariance of early visual cortex is negatively associated with PTSD symptoms: A Mega-Analysis from the ENIGMA PTSD workgroup. Harnett NG, Joshi S, Kumar P, Russell C, Dillon DG, Baker JT, Pizzagalli DA, Kaufman ML, Nickerson LN, Jahanshad N, Salminen LE, Thomopoulos SI, Frijling JL, Veltman DJ, Koch SBJ, Nawijn L, van Zuiden M, Zhu Y, Li G, Ipser J, Zhu X, Ravid O, Zilcha-Mano S, Lazarov A, Suarez-Jimenez B, Sun D, Hussain A, Huggins AA, Jovanovic T, van Rooij SJH, Fani N, Hudson AR, Sierk A, Manthey A, Walter H, van der Wee NJA, van der Werff SJA, Vermeiren RRJM, Říha P, Lebois LAM, Rosso IM, Olson EA, Liberzon I, Angstadt M, Disner SG, Sponheim SR, Koopowitz SM, Hofmann D, Qi R, Maron-Katz A, Kunch A, Xie H, El-Hage W, Berg H, Bruce SE, McLaughlin KA, Peverill M, Sambrook K, Ross M, Herringa RJ, Nitschke JB, Davidson RJ, deRoon-Cassini TA, Tomas CW, Fitzgerald JM, Blackford JU, Olatunji BO, Nelson SM, Gordon EM, Densmore M, Théberge J, Neufeld RWJ, Olff M, Wang L, Stein DJ, Neria Y, Stevens JS, Mueller SC, Daniels JK, Rektor I, King A, Davenport ND, Straube T, Lu G, Etkin A, Wang X, Quidé Y, Lissek S, Cisler J, Grupe DW, Larson C, Feola B, May G, Abdallah CG, Lanius R, Thompson PM, Morey RA, Ressler K medRxiv : the preprint server for health sciences 40166540 medRxiv 2025 Mar 19 https://www.ncbi.nlm.nih.gov/pubmed/40166540
Copy number variants and the tangential expansion of the cerebral cortex. Liao Z, Kumar K, Kopal J, Huguet G, Saci Z, Jean-Louis M, Pausova Z, Jurisica I, Bearden CE, IMAGEN Consortium, 16p11.2 European Consortium, Jacquemont S, Paus T Nature communications 39962045 Nat Commun 2025 Feb 17 https://www.ncbi.nlm.nih.gov/pubmed/39962045
Adolescent maturation of cortical excitation-inhibition ratio based on individualized biophysical network modeling. Saberi A, Wischnewski KJ, Jung K, Lotter LD, Schaare HL, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Martinot MP, Artiges E, Nees F, Papadopoulos Orfanos D, Lemaitre H, Poustka L, Hohmann S, Holz N, Baeuchl C, Smolka MN, Vaidya N, Walter H, Whelan R, Schumann G, IMAGEN Consortium, Paus T, Dukart J, Bernhardt BC, Popovych OV, Eickhoff SB, Valk SL Science advances 40465711 Sci Adv 2025 Jun 6 https://www.ncbi.nlm.nih.gov/pubmed/40465711
A worldwide study of subcortical shape as a marker for clinical staging in Parkinson's disease. Laansma MA, Zhao Y, van Heese EM, Bright JK, Owens-Walton C, Al-Bachari S, Anderson TJ, Assogna F, van Balkom TD, Berendse HW, Cendes F, Dalrymple-Alford JC, Debove I, Dirkx MF, Druzgal J, Emsley HCA, Fouche JP, Garraux G, Guimarães RP, Helmich RC, Hu M, van den Heuvel OA, Isaev D, Kim HB, Klein JC, Lochner C, McMillan CT, Melzer TR, Newman B, Parkes LM, Pellicano C, Piras F, Pitcher TL, Poston KL, Rango M, Ribeiro LF, Rocha CS, Rummel C, Santos LSR, Schmidt R, Schwingenschuh P, Squarcina L, Stein DJ, Vecchio D, Vriend C, Wang J, Weintraub D, Wiest R, Yasuda CL, Jahanshad N, Thompson PM, van der Werf YD, Gutman BA NPJ Parkinson's disease 39557903 NPJ Parkinsons Dis 2024 Nov 19 https://www.ncbi.nlm.nih.gov/pubmed/39557903
Networks extracted from nonlinear fMRI connectivity exhibit unique spatial variation and enhanced sensitivity to differences between individuals with schizophrenia and controls. Kinsey S, Kazimierczak K, Camazón PA, Chen J, Adali T, Kochunov P, Adhikari BM, Ford J, van Erp TGM, Dhamala M, Calhoun VD, Iraji A Nature. Mental health 39650801 Nat Ment Health 2024 https://www.ncbi.nlm.nih.gov/pubmed/39650801
Predicting Depression Onset in Young People Based on Clinical, Cognitive, Environmental, and Neurobiological Data. Toenders YJ, Kottaram A, Dinga R, Davey CG, Banaschewski T, Bokde ALW, Quinlan EB, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Nees F, Orfanos DP, Lemaitre H, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Stringaris A, van Noort B, Penttilä J, Grimmer Y, Insensee C, Becker A, Schumann G, IMAGEN Consortium, Schmaal L Biological psychiatry. Cognitive neuroscience and neuroimaging 33753312 Biol Psychiatry Cogn Neurosci Neuroimaging 2022 Apr https://www.ncbi.nlm.nih.gov/pubmed/33753312
Characterizing neuroanatomic heterogeneity in people with and without ADHD based on subcortical brain volumes. Li T, van Rooij D, Roth Mota N, Buitelaar JK, ENIGMA ADHD Working Group, Hoogman M, Arias Vasquez A, Franke B Journal of child psychology and psychiatry, and allied disciplines 33786843 J Child Psychol Psychiatry 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/33786843
Cortical thickness across the lifespan: Data from 17,075 healthy individuals aged 3-90 years. Frangou S, Modabbernia A, Williams SCR, Papachristou E, Doucet GE, Agartz I, Aghajani M, Akudjedu TN, Albajes-Eizagirre A, Alnaes D, Alpert KI, Andersson M, Andreasen NC, Andreassen OA, Asherson P, Banaschewski T, Bargallo N, Baumeister S, Baur-Streubel R, Bertolino A, Bonvino A, Boomsma DI, Borgwardt S, Bourque J, Brandeis D, Breier A, Brodaty H, Brouwer RM, Buitelaar JK, Busatto GF, Buckner RL, Calhoun V, Canales-Rodríguez EJ, Cannon DM, Caseras X, Castellanos FX, Cervenka S, Chaim-Avancini TM, Ching CRK, Chubar V, Clark VP, Conrod P, Conzelmann A, Crespo-Facorro B, Crivello F, Crone EA, Dale AM, Dannlowski U, Davey C, de Geus EJC, de Haan L, de Zubicaray GI, den Braber A, Dickie EW, Di Giorgio A, Doan NT, Dørum ES, Ehrlich S, Erk S, Espeseth T, Fatouros-Bergman H, Fisher SE, Fouche JP, Franke B, Frodl T, Fuentes-Claramonte P, Glahn DC, Gotlib IH, Grabe HJ, Grimm O, Groenewold NA, Grotegerd D, Gruber O, Gruner P, Gur RE, Gur RC, Hahn T, Harrison BJ, Hartman CA, Hatton SN, Heinz A, Heslenfeld DJ, Hibar DP, Hickie IB, Ho BC, Hoekstra PJ, Hohmann S, Holmes AJ, Hoogman M, Hosten N, Howells FM, Hulshoff Pol HE, Huyser C, Jahanshad N, James A, Jernigan TL, Jiang J, Jönsson EG, Joska JA, Kahn R, Kalnin A, Kanai R, Klein M, Klyushnik TP, Koenders L, Koops S, Krämer B, Kuntsi J, Lagopoulos J, Lázaro L, Lebedeva I, Lee WH, Lesch KP, Lochner C, Machielsen MWJ, Maingault S, Martin NG, Martínez-Zalacaín I, Mataix-Cols D, Mazoyer B, McDonald C, McDonald BC, McIntosh AM, McMahon KL, McPhilemy G, Meinert S, Menchón JM, Medland SE, Meyer-Lindenberg A, Naaijen J, Najt P, Nakao T, Nordvik JE, Nyberg L, Oosterlaan J, de la Foz VO, Paloyelis Y, Pauli P, Pergola G, Pomarol-Clotet E, Portella MJ, Potkin SG, Radua J, Reif A, Rinker DA, Roffman JL, Rosa PGP, Sacchet MD, Sachdev PS, Salvador R, Sánchez-Juan P, Sarró S, Satterthwaite TD, Saykin AJ, Serpa MH, Schmaal L, Schnell K, Schumann G, Sim K, Smoller JW, Sommer I, Soriano-Mas C, Stein DJ, Strike LT, Swagerman SC, Tamnes CK, Temmingh HS, Thomopoulos SI, Tomyshev AS, Tordesillas-Gutiérrez D, Trollor JN, Turner JA, Uhlmann A, van den Heuvel OA, van den Meer D, van der Wee NJA, van Haren NEM, van 't Ent D, van Erp TGM, Veer IM, Veltman DJ, Voineskos A, Völzke H, Walter H, Walton E, Wang L, Wang Y, Wassink TH, Weber B, Wen W, West JD, Westlye LT, Whalley H, Wierenga LM, Wittfeld K, Wolf DH, Worker A, Wright MJ, Yang K, Yoncheva Y, Zanetti MV, Ziegler GC, Karolinska Schizophrenia Project (KaSP), Thompson PM, Dima D Human brain mapping 33595143 Hum Brain Mapp 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/33595143
Evidence for similar structural brain anomalies in youth and adult attention-deficit/hyperactivity disorder: a machine learning analysis. Zhang-James Y, Helminen EC, Liu J, ENIGMA-ADHD Working Group, Franke B, Hoogman M, Faraone SV Translational psychiatry 33526765 Transl Psychiatry 2021 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/33526765
Large-scale collaboration in ENIGMA-EEG: A perspective on the meta-analytic approach to link neurological and psychiatric liability genes to electrophysiological brain activity. Smit DJA, Andreassen OA, Boomsma DI, Burwell SJ, Chorlian DB, de Geus EJC, Elvsåshagen T, Gordon RL, Harper J, Hegerl U, Hensch T, Iacono WG, Jawinski P, Jönsson EG, Luykx JJ, Magne CL, Malone SM, Medland SE, Meyers JL, Moberget T, Porjesz B, Sander C, Sisodiya SM, Thompson PM, van Beijsterveldt CEM, van Dellen E, Via M, Wright MJ Brain and behavior 34291596 Brain Behav 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/34291596
Mapping cortical and subcortical asymmetries in substance dependence: Findings from the ENIGMA Addiction Working Group. Cao Z, Ottino-Gonzalez J, Cupertino RB, Schwab N, Hoke C, Catherine O, Cousijn J, Dagher A, Foxe JJ, Goudriaan AE, Hester R, Hutchison K, Li CR, London ED, Lorenzetti V, Luijten M, Martin-Santos R, Momenan R, Paulus MP, Schmaal L, Sinha R, Sjoerds Z, Solowij N, Stein DJ, Stein EA, Uhlmann A, van Holst RJ, Veltman DJ, Wiers RW, Yücel M, Zhang S, Jahanshad N, Thompson PM, Conrod P, Mackey S, Garavan H Addiction biology 33508888 Addict Biol 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/33508888
Structural brain imaging studies offer clues about the effects of the shared genetic etiology among neuropsychiatric disorders. Radonjić NV, Hess JL, Rovira P, Andreassen O, Buitelaar JK, Ching CRK, Franke B, Hoogman M, Jahanshad N, McDonald C, Schmaal L, Sisodiya SM, Stein DJ, van den Heuvel OA, van Erp TGM, van Rooij D, Veltman DJ, Thompson P, Faraone SV Molecular psychiatry 33456050 Mol Psychiatry 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/33456050
Are Sex Differences in Human Brain Structure Associated With Sex Differences in Behavior? van Eijk L, Zhu D, Couvy-Duchesne B, Strike LT, Lee AJ, Hansell NK, Thompson PM, de Zubicaray GI, McMahon KL, Wright MJ, Zietsch BP Psychological science 34323639 Psychol Sci 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/34323639
Coordinating Global Multi-Site Studies of Military-Relevant Traumatic Brain Injury: Opportunities, Challenges, and Harmonization Guidelines. Tate DF, Dennis EL, Adams JT, Adamson MM, Belanger HG, Bigler ED, Bouchard HC, Clark AL, Delano-Wood LM, Disner SG, Eapen BC, Franz CE, Geuze E, Goodrich-Hunsaker NJ, Han K, Hayes JP, Hinds SR 2nd, Hodges CB, Hovenden ES, Irimia A, Kenney K, Koerte IK, Kremen WS, Levin HS, Lindsey HM, Morey RA, Newsome MR, Ollinger J, Pugh MJ, Scheibel RS, Shenton ME, Sullivan DR, Taylor BA, Troyanskaya M, Velez C, Wade BS, Wang X, Ware AL, Zafonte R, Thompson PM, Wilde EA Brain imaging and behavior 33409819 Brain Imaging Behav 2021 Apr https://www.ncbi.nlm.nih.gov/pubmed/33409819
Prioritizing Genetic Contributors to Cortical Alterations in 22q11.2 Deletion Syndrome Using Imaging Transcriptomics. Forsyth JK, Mennigen E, Lin A, Sun D, Vajdi A, Kushan-Wells L, Ching CRK, Villalon-Reina JE, Thompson PM, 22q11.2 ENIGMA Consortium, Bearden CE Cerebral cortex (New York, N.Y. : 1991) 33638978 Cereb Cortex 2021 Jun 10 https://www.ncbi.nlm.nih.gov/pubmed/33638978
Association between vmPFC gray matter volume and smoking initiation in adolescents. Xiang S, Jia T, Xie C, Cheng W, Chaarani B, Banaschewski T, Barker GJ, Bokde ALW, Büchel C, Desrivières S, Flor H, Grigis A, Gowland PA, Brühl R, Martinot JL, Martinot MP, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Vaidya N, Walter H, Whelan R, Garavan H, Schumann G, Sahakian BJ, Robbins TW, Feng J, IMAGEN Consortium Nature communications 37582920 Nat Commun 2023 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/37582920
Anxiety onset in adolescents: a machine-learning prediction. Chavanne AV, Paillère Martinot ML, Penttilä J, Grimmer Y, Conrod P, Stringaris A, van Noort B, Isensee C, Becker A, Banaschewski T, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Brühl R, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Hohmann S, Millenet S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Martinot JL, Artiges E, IMAGEN consortium Molecular psychiatry 36481929 Mol Psychiatry 2023 Feb https://www.ncbi.nlm.nih.gov/pubmed/36481929
Genomic Structural Equation Modeling Reveals Latent Phenotypes in the Human Cortex with Distinct Genetic Architecture. Morey R, Zheng Y, Sun D, Garrett M, Gasperi M, Maihofer A, Baird CL, Grasby K, Huggins A, Haswell C, Thompson P, Medland S, Gustavson D, Panizzon M, Kremen W, Nievergelt C, Ashley-Koch A, Logue L Research square 37886496 Res Sq 2023 Oct 3 https://www.ncbi.nlm.nih.gov/pubmed/37886496
Neuroimaging-based classification of PTSD using data-driven computational approaches: A multisite big data study from the ENIGMA-PGC PTSD consortium. Zhu X, Kim Y, Ravid O, He X, Suarez-Jimenez B, Zilcha-Mano S, Lazarov A, Lee S, Abdallah CG, Angstadt M, Averill CL, Baird CL, Baugh LA, Blackford JU, Bomyea J, Bruce SE, Bryant RA, Cao Z, Choi K, Cisler J, Cotton AS, Daniels JK, Davenport ND, Davidson RJ, DeBellis MD, Dennis EL, Densmore M, deRoon-Cassini T, Disner SG, Hage WE, Etkin A, Fani N, Fercho KA, Fitzgerald J, Forster GL, Frijling JL, Geuze E, Gonenc A, Gordon EM, Gruber S, Grupe DW, Guenette JP, Haswell CC, Herringa RJ, Herzog J, Hofmann DB, Hosseini B, Hudson AR, Huggins AA, Ipser JC, Jahanshad N, Jia-Richards M, Jovanovic T, Kaufman ML, Kennis M, King A, Kinzel P, Koch SBJ, Koerte IK, Koopowitz SM, Korgaonkar MS, Krystal JH, Lanius R, Larson CL, Lebois LAM, Li G, Liberzon I, Lu GM, Luo Y, Magnotta VA, Manthey A, Maron-Katz A, May G, McLaughlin K, Mueller SC, Nawijn L, Nelson SM, Neufeld RWJ, Nitschke JB, O'Leary EM, Olatunji BO, Olff M, Peverill M, Phan KL, Qi R, Quidé Y, Rektor I, Ressler K, Riha P, Ross M, Rosso IM, Salminen LE, Sambrook K, Schmahl C, Shenton ME, Sheridan M, Shih C, Sicorello M, Sierk A, Simmons AN, Simons RM, Simons JS, Sponheim SR, Stein MB, Stein DJ, Stevens JS, Straube T, Sun D, Théberge J, Thompson PM, Thomopoulos SI, van der Wee NJA, van der Werff SJA, van Erp TGM, van Rooij SJH, van Zuiden M, Varkevisser T, Veltman DJ, Vermeiren RRJM, Walter H, Wang L, Wang X, Weis C, Winternitz S, Xie H, Zhu Y, Wall M, Neria Y, Morey RA NeuroImage 37858907 Neuroimage 2023 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/37858907
Unravelling Robust Brain-Behavior Links of Depressive Symptoms Through Granular Network Models: Understanding Heterogeneity and Clinical Implications. Freichel R, Lenartowicz A, Douw L, Kruschwitz JD, Banaschewski T, Barker GJ, Bokde ALW, Desrivières S, Flor H, Grigis A, Garavan H, Heinz A, Brühl R, Martinot JL, Paillère Martinot ML, Artiges E, Nees F, Orfanos DP, Paus T, Poustka L, Holz N, Baeuchl C, Smolka MN, Vaidya N, Whelan R, Frouin V, Schumann G, IMAGEN Consortium, Walter H, Blanken TF medRxiv : the preprint server for health sciences 38045393 medRxiv 2023 Nov 21 https://www.ncbi.nlm.nih.gov/pubmed/38045393
Multimodal Analysis of Secondary Cerebellar Alterations After Pediatric Traumatic Brain Injury. Keleher F, Lindsey HM, Kerestes R, Amiri H, Asarnow RF, Babikian T, Bartnik-Olson B, Bigler ED, Caeyenberghs K, Esopenko C, Ewing-Cobbs L, Giza CC, Goodrich-Hunsaker NJ, Hodges CB, Hoskinson KR, Irimia A, Königs M, Max JE, Newsome MR, Olsen A, Ryan NP, Schmidt AT, Stein DJ, Suskauer SJ, Ware AL, Wheeler AL, Zielinski BA, Thompson PM, Harding IH, Tate DF, Wilde EA, Dennis EL JAMA network open 37966838 JAMA Netw Open 2023 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/37966838
Source-based morphometry reveals structural brain pattern abnormalities in 22q11.2 deletion syndrome. Ge R, Ching CRK, Bassett AS, Kushan L, Antshel KM, van Amelsvoort T, Bakker G, Butcher NJ, Campbell LE, Chow EWC, Craig M, Crossley NA, Cunningham A, Daly E, Doherty JL, Durdle CA, Emanuel BS, Fiksinski A, Forsyth JK, Fremont W, Goodrich-Hunsaker NJ, Gudbrandsen M, Gur RE, Jalbrzikowski M, Kates WR, Lin A, Linden DEJ, McCabe KL, McDonald-McGinn D, Moss H, Murphy DG, Murphy KC, Owen MJ, Villalon-Reina JE, Repetto GM, Roalf DR, Ruparel K, Schmitt JE, Schuite-Koops S, Angkustsiri K, Sun D, Vajdi A, van den Bree M, Vorstman J, Thompson PM, Vila-Rodriguez F, Bearden CE Human brain mapping 38224541 Hum Brain Mapp 2024 Jan https://www.ncbi.nlm.nih.gov/pubmed/38224541
Local molecular and global connectomic contributions to cross-disorder cortical abnormalities. Hansen JY, Shafiei G, Vogel JW, Smart K, Bearden CE, Hoogman M, Franke B, van Rooij D, Buitelaar J, McDonald CR, Sisodiya SM, Schmaal L, Veltman DJ, van den Heuvel OA, Stein DJ, van Erp TGM, Ching CRK, Andreassen OA, Hajek T, Opel N, Modinos G, Aleman A, van der Werf Y, Jahanshad N, Thomopoulos SI, Thompson PM, Carson RE, Dagher A, Misic B Nature communications 35948562 Nat Commun 2022 Aug 10 https://www.ncbi.nlm.nih.gov/pubmed/35948562
Inference of putative cell-type-specific imprinted regulatory elements and genes during human neuronal differentiation. Liang D, Aygün N, Matoba N, Ideraabdullah FY, Love MI, Stein JL Human molecular genetics 35994039 Hum Mol Genet 2023 Jan 13 https://www.ncbi.nlm.nih.gov/pubmed/35994039
Associations of medication with subcortical morphology across the lifespan in OCD: Results from the international ENIGMA Consortium. Ivanov I, Boedhoe PSW, Abe Y, Alonso P, Ameis SH, Arnold PD, Balachander S, Baker JT, Banaj N, Bargalló N, Batistuzzo MC, Benedetti F, Beucke JC, Bollettini I, Brem S, Brennan BP, Buitelaar J, Calvo R, Cheng Y, Cho KIK, Dallaspezia S, Denys D, Diniz JB, Ely BA, Feusner JD, Ferreira S, Fitzgerald KD, Fontaine M, Gruner P, Hanna GL, Hirano Y, Hoexter MQ, Huyser C, Ikari K, James A, Jaspers-Fayer F, Jiang H, Kathmann N, Kaufmann C, Kim M, Koch K, Kwon JS, Lázaro L, Liu Y, Lochner C, Marsh R, Martínez-Zalacaín I, Mataix-Cols D, Menchón JM, Minuzzi L, Morer A, Morgado P, Nakagawa A, Nakamae T, Nakao T, Narayanaswamy JC, Nurmi EL, Oh S, Perriello C, Piacentini JC, Picó-Pérez M, Piras F, Piras F, Reddy YCJ, Manrique DR, Sakai Y, Shimizu E, Simpson HB, Soreni N, Soriano-Mas C, Spalletta G, Stern ER, Stevens MC, Stewart SE, Szeszko PR, Tolin DF, van Rooij D, Veltman DJ, van der Werf YD, van Wingen GA, Venkatasubramanian G, Walitza S, Wang Z, Watanabe A, Wolters LH, Xu X, Yun JY, Zarei M, Zhang F, Zhao Q, Jahanshad N, Thomopoulos SI, Thompson PM, Stein DJ, van den Heuvel OA, O'Neill J, ENIGMA-OCD Working Group Journal of affective disorders 36041582 J Affect Disord 2022 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/36041582
Brain functional connectivity mirrors genetic pleiotropy in psychiatric conditions. Moreau CA, Kumar K, Harvey A, Huguet G, Urchs SGW, Schultz LM, Sharmarke H, Jizi K, Martin CO, Younis N, Tamer P, Martineau JL, Orban P, Silva AI, Hall J, van den Bree MBM, Owen MJ, Linden DEJ, Lippé S, Bearden CE, Almasy L, Glahn DC, Thompson PM, Bourgeron T, Bellec P, Jacquemont S Brain : a journal of neurology 36059063 Brain 2023 Apr 19 https://www.ncbi.nlm.nih.gov/pubmed/36059063
Shape analysis of subcortical structures in obsessive-compulsive disorder and the relationship with comorbid anxiety, depression, and medication use: A meta-analysis by the OCD Brain Imaging Consortium. Fouche JP, Groenewold NA, Sevenoaks T, Heany S, Lochner C, Alonso P, Batistuzzo MC, Cardoner N, Ching CRK, de Wit SJ, Gutman B, Hoexter MQ, Jahanshad N, Kim M, Kwon JS, Mataix-Cols D, Menchon JM, Miguel EC, Nakamae T, Phillips ML, Pujol J, Sakai Y, Yun JY, Soriano-Mas C, Thompson PM, Yamada K, Veltman DJ, van den Heuvel OA, Stein DJ Brain and behavior 36106505 Brain Behav 2022 Oct https://www.ncbi.nlm.nih.gov/pubmed/36106505
The role of educational attainment and brain morphology in major depressive disorder: Findings from the ENIGMA major depressive disorder consortium. Whittle S, Rakesh D, Schmaal L, Veltman DJ, Thompson PM, Singh A, Gonul AS, Aleman A, Uyar Demir A, Krug A, Mwangi B, Krämer B, Baune BT, Stein DJ, Grotegerd D, Pomarol-Clotet E, Rodríguez-Cano E, Melloni E, Benedetti F, Stein F, Grabe HJ, Völzke H, Gotlib IH, Nenadić I, Soares JC, Repple J, Sim K, Brosch K, Wittfeld K, Berger K, Hermesdorf M, Portella MJ, Sacchet MD, Wu MJ, Opel N, Groenewold NA, Gruber O, Fuentes-Claramonte P, Salvador R, Goya-Maldonado R, Sarró S, Poletti S, Meinert SL, Kircher T, Dannlowski U, Pozzi E Journal of psychopathology and clinical science 35653754 J Psychopathol Clin Sci 2022 Aug https://www.ncbi.nlm.nih.gov/pubmed/35653754
Structural Covariance of Early Visual Cortex Is Negatively Associated With Posttraumatic Stress Disorder Symptoms: A Mega-Analysis From the ENIGMA PTSD Working Group. Harnett NG, Joshi S, Kumar P, Russell C, Dillon DG, Baker JT, Pizzagalli DA, Kaufman ML, Nickerson LD, Jahanshad N, Salminen LE, Thomopoulos SI, Frijling JL, Veltman DJ, Koch SBJ, Nawijn L, van Zuiden M, Zhu Y, Li G, Ipser J, Zhu X, Ravid O, Zilcha-Mano S, Lazarov A, Suarez-Jimenez B, Sun D, Hussain A, Huggins AA, Jovanovic T, van Rooij SJH, Fani N, Hudson AR, Sierk A, Manthey A, Walter H, van der Wee NJA, van der Werff SJA, Vermeiren RRJM, Říha P, Lebois LAM, Rosso IM, Olson EA, Liberzon I, Angstadt M, Disner SG, Sponheim SR, Koopowitz SM, Hofmann D, Qi R, Maron-Katz A, Kunch A, Xie H, El-Hage W, Berg H, Bruce SE, McLaughlin KA, Peverill M, Sambrook K, Ross M, Herringa RJ, Nitschke JB, Davidson RJ, deRoon-Cassini TA, Tomas CW, Fitzgerald JM, Blackford JU, Olatunji BO, Nelson SM, Gordon EM, Densmore M, Théberge J, Neufeld RWJ, Olff M, Wang L, Stein DJ, Neria Y, Stevens JS, Mueller SC, Daniels JK, Rektor I, King A, Davenport ND, Straube T, Lu G, Etkin A, Wang X, Quidé Y, Lissek S, Cisler J, Grupe DW, Larson C, Feola B, May G, Abdallah CG, Lanius R, Thompson PM, Morey RA, Ressler KJ Biological psychiatry. Cognitive neuroscience and neuroimaging 40712699 Biol Psychiatry Cogn Neurosci Neuroimaging 2026 Jan https://www.ncbi.nlm.nih.gov/pubmed/40712699
Structural Brain Correlates of Childhood Inhibited Temperament: An ENIGMA-Anxiety Mega-Analysis. Bas-Hoogendam JM, Bernstein RA, Benson BE, Frank SEC, Buss KA, Gunther KE, Pérez-Edgar K, Salum GA, Jackowski A, Bressan RA, Zugman A, Degnan KA, Filippi CA, Fox NA, Henderson HA, Tang A, Zeytinoglu S, Harrewijn A, Hillegers MHJ, Muetzel RL, White T, van IJzendoorn MH, Schwartz CE, Felicione JM, DeYoung KA, Shackman AJ, Smith JF, Tillman RM, van den Berg YHM, Cillessen AHN, Roelofs K, Tyborowska A, Hill SY, Battaglia M, Tettamanti M, Dougherty LR, Jin J, Klein DN, Leung HC, Avery SN, Blackford JU, Clauss JA, Bjork JM, Hettema JM, Moore AA, Roberson-Nay R, Sawyers C, Hayden EP, Liu P, Vandermeer MRJ, Goldsmith HH, Planalp EM, Nichols TE, Thompson PM, Westenberg PM, van der Wee NJA, Groenewold NA, Stein DJ, Winkler AM, Pine DS Journal of the American Academy of Child and Adolescent Psychiatry 40619094 J Am Acad Child Adolesc Psychiatry 2026 Apr https://www.ncbi.nlm.nih.gov/pubmed/40619094
Lifestyle, Early-life, and Genetic Health Risk Factors Underlying the Brain Age Gap: A Mega-Analysis Across 3,934 Individuals from the ENIGMA MDD Consortium. Han LKM, Toenders YJ, Shen X, Milaneschi Y, Whalley HC, Sämann PG, Andlauer T, Bauer J, Berger K, Borgers T, Cole JH, Dannlowski U, Flinkenflügel K, Grabe HJ, Gruber O, Hahn T, Hamilton PJ, Hatton SN, Hermesdorf M, Hickie I, Homann J, Kircher TJ, Krämer B, Kraus A, Krug A, Lill CM, Medland SE, Meinert S, Panzenhagen A, Penninx BWJH, van der Wee NJA, van Tol MJ, Völker U, Völzke H, Weihs A, Wittfeld K, Thomopoulos SI, Jahanshad N, Thompson PM, Pozzi E, Schmaal L bioRxiv : the preprint server for biology 40655020 bioRxiv 2025 May 11 https://www.ncbi.nlm.nih.gov/pubmed/40655020
Image-based meta- and mega-analysis (IBMMA): A unified framework for large-scale, multi-site, neuroimaging data analysis. Steele N, Huggins AA, Morey RA, Hussain A, Russell C, Suarez-Jimenez B, Pozzi E, Jameei H, Schmaal L, Veer IM, Waller L, Jahanshad N, Thomopoulos SI, Salminen LE, Olff M, Frijling JL, Veltman DJ, Koch SBJ, Nawijn L, van Zuiden M, Wang L, Zhu Y, Li G, Stein DJ, Ipser J, Neria Y, Zhu X, Ravid O, Zilcha-Mano S, Lazarov A, Stevens JS, Ressler K, Jovanovic T, van Rooij SJH, Fani N, Mueller SC, Hudson AR, Daniels JK, Sierk A, Manthey A, Walter H, van der Wee NJA, van der Werff SJA, Vermeiren RRJM, Schmahl C, Herzog JI, Rektor I, Říha P, Kaufman ML, Lebois LAM, Baker JT, Rosso IM, Olson EA, King A, Liberzon I, Angstadt M, Davenport ND, Disner SG, Sponheim SR, Straube T, Hofmann D, Lu G, Qi R, Wang X, Kunch A, Xie H, Quidé Y, El-Hage W, Lissek S, Berg H, Bruce SE, Cisler J, Ross M, Herringa RJ, Grupe DW, Nitschke JB, Davidson RJ, Larson C, deRoon-Cassini TA, Tomas CW, Fitzgerald JM, Elman J, Panizzon M, Franz CE, Lyons MJ, Kremen WS, Feola B, Blackford JU, Olatunji BO, May G, Nelson SM, Gordon EM, Abdallah CG, Lanius R, Densmore M, Théberge J, Neufeld RWJ, Thompson PM, Sun D NeuroImage 41138791 Neuroimage 2025 Nov 15 https://www.ncbi.nlm.nih.gov/pubmed/41138791
A psychobiological resilience factor for mental health across the lifespan. Jia T, Yang Z, Xiang S, Zhai R, Zheng C, Hu Y, Banaschewski T, Bokde A, Desrivières S, Flor H, Garavan H, Gowland P, Grigis A, Heinz A, Martinot JL, Martinot ML, Artiges E, Nees F, Orfanos DP, Poustka L, Smolka M, Hohmann S, Holz N, Vaidya N, Walter H, Whelan R, Schumann G, Feng J, Sahakian B, Xie C Research square 41282168 Res Sq 2025 Oct 29 https://www.ncbi.nlm.nih.gov/pubmed/41282168
Brain morphology mediators of the link between childhood trauma and bipolar disorder: a large-scale international analysis. Tozzi L, Dauvermann MR, Corley E, Fernandes A, Kang MJY, Im Y, Nabulsi L, Goya-Maldonado R, Berger K, Hermesdorf M, Blumberg HP, Colic L, Van Rheenen TE, Ringin E, Rossell SL, Karantonis JA, Furlong LS, Kircher T, Stein F, Dannlowski U, Grotegerd D, Soares JC, Wu MJ, Zunta-Soares GB, Mwangi B, Radua J, Vilajosana E, Vieta E, Green MJ, Olie E, Clain G, Benedetti F, Melloni E, Bravi B, Janiri D, Vecchio D, Piras F, Banaj N, Sani G, Roberts G, Fullerton JM, Overs BJ, Mitchell PB, Savitz J, Yatham LN, Houenou J, Leboyer M, Rodrigue A, Glahn DC, Thomopoulos SI, Jahanshad N, Thompson PM, Andreassen OA, Ching CRK, Cannon DM, Quidé Y, ENIGMA Bipolar Disorder Working Group medRxiv : the preprint server for health sciences 41282728 medRxiv 2025 Nov 4 https://www.ncbi.nlm.nih.gov/pubmed/41282728
Identification of Biological Subtypes of Friedreich Ataxia with Structural MRI-based Machine Learning. Pontillo G, Penna S, Arrigoni F, Bender B, Boesch S, Brunetti A, Cendes F, Chopra S, Corben LA, Deistung A, Delatycki MB, Diciotti S, Dogan I, Egan GF, França MC Jr, Georgiou-Karistianis N, Göricke SL, Henry PG, Hernandez-Castillo CR, Hutter D, Joers JM, Lenglet C, Lindig T, Lodi R, Manners DN, Martinez ARM, Martinuzzi A, Marzi C, Mascalchi M, Nachbauer W, Pane C, Peruzzo D, Pishardy PK, Reetz K, Rezende TJR, Romanzetti S, Saccà F, Schoels L, Schulz JB, Stefani A, Synofzik M, Thomopoulos SI, Thompson PM, Timmann D, Tonon C, Vavla M, Harding IH, Cocozza S Radiology 41805414 Radiology 2026 Mar https://www.ncbi.nlm.nih.gov/pubmed/41805414
Publicly Available Data Provide Evidence against NR1H3 R415Q Causing Multiple Sclerosis. Minikel EV, MacArthur DG Neuron 27764668 Neuron 2016 Oct 19 https://www.ncbi.nlm.nih.gov/pubmed/27764668
Quantifying unobserved protein-coding variants in human populations provides a roadmap for large-scale sequencing projects. Zou J, Valiant G, Valiant P, Karczewski K, Chan SO, Samocha K, Lek M, Sunyaev S, Daly M, MacArthur DG Nature communications 27796292 Nat Commun 2016 Oct 31 https://www.ncbi.nlm.nih.gov/pubmed/27796292
Health and population effects of rare gene knockouts in adult humans with related parents. Narasimhan VM, Hunt KA, Mason D, Baker CL, Karczewski KJ, Barnes MR, Barnett AH, Bates C, Bellary S, Bockett NA, Giorda K, Griffiths CJ, Hemingway H, Jia Z, Kelly MA, Khawaja HA, Lek M, McCarthy S, McEachan R, O'Donnell-Luria A, Paigen K, Parisinos CA, Sheridan E, Southgate L, Tee L, Thomas M, Xue Y, Schnall-Levin M, Petkov PM, Tyler-Smith C, Maher ER, Trembath RC, MacArthur DG, Wright J, Durbin R, van Heel DA Science (New York, N.Y.) 26940866 Science 2016 Apr 22 https://www.ncbi.nlm.nih.gov/pubmed/26940866
ClinVar data parsing. Zhang X, Minikel EV, O'Donnell-Luria AH, MacArthur DG, Ware JS, Weisburd B Wellcome open research 28630944 Wellcome Open Res 2017 https://www.ncbi.nlm.nih.gov/pubmed/28630944
Characterising the loss-of-function impact of 5' untranslated region variants in 15,708 individuals. Whiffin N, Karczewski KJ, Zhang X, Chothani S, Smith MJ, Evans DG, Roberts AM, Quaife NM, Schafer S, Rackham O, Alföldi J, O'Donnell-Luria AH, Francioli LC, Genome Aggregation Database Production Team, Genome Aggregation Database Consortium, Cook SA, Barton PJR, MacArthur DG, Ware JS Nature communications 32461616 Nat Commun 2020 May 27 https://www.ncbi.nlm.nih.gov/pubmed/32461616
Quantifying the Impact of Rare and Ultra-rare Coding Variation across the Phenotypic Spectrum. Ganna A, Satterstrom FK, Zekavat SM, Das I, Kurki MI, Churchhouse C, Alfoldi J, Martin AR, Havulinna AS, Byrnes A, Thompson WK, Nielsen PR, Karczewski KJ, Saarentaus E, Rivas MA, Gupta N, Pietiläinen O, Emdin CA, Lescai F, Bybjerg-Grauholm J, Flannick J, GoT2D/T2D-GENES Consortium, Mercader JM, Udler M, SIGMA Consortium Helmsley IBD Exome Sequencing Project, FinMetSeq Consortium, iPSYCH-Broad Consortium, Laakso M, Salomaa V, Hultman C, Ripatti S, Hämäläinen E, Moilanen JS, Körkkö J, Kuismin O, Nordentoft M, Hougaard DM, Mors O, Werge T, Mortensen PB, MacArthur D, Daly MJ, Sullivan PF, Locke AE, Palotie A, Børglum AD, Kathiresan S, Neale BM American journal of human genetics 29861106 Am J Hum Genet 2018 Jun 7 https://www.ncbi.nlm.nih.gov/pubmed/29861106
Pathogenic ASXL1 somatic variants in reference databases complicate germline variant interpretation for Bohring-Opitz Syndrome. Carlston CM, O'Donnell-Luria AH, Underhill HR, Cummings BB, Weisburd B, Minikel EV, Birnbaum DP, Exome Aggregation Consortium, Tvrdik T, MacArthur DG, Mao R Human mutation 28229513 Hum Mutat 2017 May https://www.ncbi.nlm.nih.gov/pubmed/28229513
Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples. Kosmicki JA, Samocha KE, Howrigan DP, Sanders SJ, Slowikowski K, Lek M, Karczewski KJ, Cutler DJ, Devlin B, Roeder K, Buxbaum JD, Neale BM, MacArthur DG, Wall DP, Robinson EB, Daly MJ Nature genetics 28191890 Nat Genet 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/28191890
Using High-Resolution Variant Frequencies Empowers Clinical Genome Interpretation and Enables Investigation of Genetic Architecture. Whiffin N, Roberts AM, Minikel E, Zappala Z, Walsh R, O'Donnell-Luria AH, Karczewski KJ, Harrison SM, Thomson KL, Sage H, Ing AY, Barton PJR, Funke B, Cook SA, MacArthur DG, Ware JS American journal of human genetics 30609406 Am J Hum Genet 2019 Jan 3 https://www.ncbi.nlm.nih.gov/pubmed/30609406
Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes. Wang Q, Pierce-Hoffman E, Cummings BB, Alföldi J, Francioli LC, Gauthier LD, Hill AJ, O'Donnell-Luria AH, Genome Aggregation Database Production Team, Genome Aggregation Database Consortium, Karczewski KJ, MacArthur DG Nature communications 32461613 Nat Commun 2020 May 27 https://www.ncbi.nlm.nih.gov/pubmed/32461613
Evaluating drug targets through human loss-of-function genetic variation. Minikel EV, Karczewski KJ, Martin HC, Cummings BB, Whiffin N, Rhodes D, Alföldi J, Trembath RC, van Heel DA, Daly MJ, Genome Aggregation Database Production Team, Genome Aggregation Database Consortium, Schreiber SL, MacArthur DG Nature 32461653 Nature 2020 May https://www.ncbi.nlm.nih.gov/pubmed/32461653
The mutational constraint spectrum quantified from variation in 141,456 humans. Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna A, Birnbaum DP, Gauthier LD, Brand H, Solomonson M, Watts NA, Rhodes D, Singer-Berk M, England EM, Seaby EG, Kosmicki JA, Walters RK, Tashman K, Farjoun Y, Banks E, Poterba T, Wang A, Seed C, Whiffin N, Chong JX, Samocha KE, Pierce-Hoffman E, Zappala Z, O'Donnell-Luria AH, Minikel EV, Weisburd B, Lek M, Ware JS, Vittal C, Armean IM, Bergelson L, Cibulskis K, Connolly KM, Covarrubias M, Donnelly S, Ferriera S, Gabriel S, Gentry J, Gupta N, Jeandet T, Kaplan D, Llanwarne C, Munshi R, Novod S, Petrillo N, Roazen D, Ruano-Rubio V, Saltzman A, Schleicher M, Soto J, Tibbetts K, Tolonen C, Wade G, Talkowski ME, Genome Aggregation Database Consortium, Neale BM, Daly MJ, MacArthur DG Nature 32461654 Nature 2020 May https://www.ncbi.nlm.nih.gov/pubmed/32461654
A genomic mutational constraint map using variation in 76,156 human genomes. Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C, Gauthier LD, Poterba T, Wilson MW, Tarasova Y, Phu W, Grant R, Yohannes MT, Koenig Z, Farjoun Y, Banks E, Donnelly S, Gabriel S, Gupta N, Ferriera S, Tolonen C, Novod S, Bergelson L, Roazen D, Ruano-Rubio V, Covarrubias M, Llanwarne C, Petrillo N, Wade G, Jeandet T, Munshi R, Tibbetts K, Genome Aggregation Database Consortium, O'Donnell-Luria A, Solomonson M, Seed C, Martin AR, Talkowski ME, Rehm HL, Daly MJ, Tiao G, Neale BM, MacArthur DG, Karczewski KJ Nature 38057664 Nature 2024 Jan https://www.ncbi.nlm.nih.gov/pubmed/38057664
Using high-resolution variant frequencies to empower clinical genome interpretation. Whiffin N, Minikel E, Walsh R, O'Donnell-Luria AH, Karczewski K, Ing AY, Barton PJR, Funke B, Cook SA, MacArthur D, Ware JS Genetics in medicine : official journal of the American College of Medical Genetics 28518168 Genet Med 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/28518168
Ultra-rare disruptive and damaging mutations influence educational attainment in the general population. Ganna A, Genovese G, Howrigan DP, Byrnes A, Kurki M, Zekavat SM, Whelan CW, Kals M, Nivard MG, Bloemendal A, Bloom JM, Goldstein JI, Poterba T, Seed C, Handsaker RE, Natarajan P, Mägi R, Gage D, Robinson EB, Metspalu A, Salomaa V, Suvisaari J, Purcell SM, Sklar P, Kathiresan S, Daly MJ, McCarroll SA, Sullivan PF, Palotie A, Esko T, Hultman C, Neale BM Nature neuroscience 27694993 Nat Neurosci 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/27694993
The ExAC browser: displaying reference data information from over 60 000 exomes. Karczewski KJ, Weisburd B, Thomas B, Solomonson M, Ruderfer DM, Kavanagh D, Hamamsy T, Lek M, Samocha KE, Cummings BB, Birnbaum D, The Exome Aggregation Consortium, Daly MJ, MacArthur DG Nucleic acids research 27899611 Nucleic Acids Res 2017 Jan 4 https://www.ncbi.nlm.nih.gov/pubmed/27899611
Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. Walsh R, Thomson KL, Ware JS, Funke BH, Woodley J, McGuire KJ, Mazzarotto F, Blair E, Seller A, Taylor JC, Minikel EV, Exome Aggregation Consortium, MacArthur DG, Farrall M, Cook SA, Watkins H Genetics in medicine : official journal of the American College of Medical Genetics 27532257 Genet Med 2017 Feb https://www.ncbi.nlm.nih.gov/pubmed/27532257
Integration of 60,000 exomes and ACMG guidelines question the role of Catecholaminergic Polymorphic Ventricular Tachycardia-associated variants. Paludan-Müller C, Ahlberg G, Ghouse J, Herfelt C, Svendsen JH, Haunsø S, Kanters JK, Olesen MS Clinical genetics 27538377 Clin Genet 2017 Jan https://www.ncbi.nlm.nih.gov/pubmed/27538377
A synthetic-diploid benchmark for accurate variant-calling evaluation. Li H, Bloom JM, Farjoun Y, Fleharty M, Gauthier L, Neale B, MacArthur D Nature methods 30013044 Nat Methods 2018 Aug https://www.ncbi.nlm.nih.gov/pubmed/30013044
The effect of LRRK2 loss-of-function variants in humans. Whiffin N, Armean IM, Kleinman A, Marshall JL, Minikel EV, Goodrich JK, Quaife NM, Cole JB, Wang Q, Karczewski KJ, Cummings BB, Francioli L, Laricchia K, Guan A, Alipanahi B, Morrison P, Baptista MAS, Merchant KM, Genome Aggregation Database Production Team, Genome Aggregation Database Consortium, Ware JS, Havulinna AS, Iliadou B, Lee JJ, Nadkarni GN, Whiteman C, 23andMe Research Team, Daly M, Esko T, Hultman C, Loos RJF, Milani L, Palotie A, Pato C, Pato M, Saleheen D, Sullivan PF, Alföldi J, Cannon P, MacArthur DG Nature medicine 32461697 Nat Med 2020 Jun https://www.ncbi.nlm.nih.gov/pubmed/32461697
Mitochondrial DNA variation across 56,434 individuals in gnomAD. Laricchia KM, Lake NJ, Watts NA, Shand M, Haessly A, Gauthier L, Benjamin D, Banks E, Soto J, Garimella K, Emery J, Genome Aggregation Database Consortium, Rehm HL, MacArthur DG, Tiao G, Lek M, Mootha VK, Calvo SE Genome research 35074858 Genome Res 2022 Mar https://www.ncbi.nlm.nih.gov/pubmed/35074858
Patterns of genic intolerance of rare copy number variation in 59,898 human exomes. Ruderfer DM, Hamamsy T, Lek M, Karczewski KJ, Kavanagh D, Samocha KE, Exome Aggregation Consortium, Daly MJ, MacArthur DG, Fromer M, Purcell SM Nature genetics 27533299 Nat Genet 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/27533299
Analysis of protein-coding genetic variation in 60,706 humans. Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill AJ, Cummings BB, Tukiainen T, Birnbaum DP, Kosmicki JA, Duncan LE, Estrada K, Zhao F, Zou J, Pierce-Hoffman E, Berghout J, Cooper DN, Deflaux N, DePristo M, Do R, Flannick J, Fromer M, Gauthier L, Goldstein J, Gupta N, Howrigan D, Kiezun A, Kurki MI, Moonshine AL, Natarajan P, Orozco L, Peloso GM, Poplin R, Rivas MA, Ruano-Rubio V, Rose SA, Ruderfer DM, Shakir K, Stenson PD, Stevens C, Thomas BP, Tiao G, Tusie-Luna MT, Weisburd B, Won HH, Yu D, Altshuler DM, Ardissino D, Boehnke M, Danesh J, Donnelly S, Elosua R, Florez JC, Gabriel SB, Getz G, Glatt SJ, Hultman CM, Kathiresan S, Laakso M, McCarroll S, McCarthy MI, McGovern D, McPherson R, Neale BM, Palotie A, Purcell SM, Saleheen D, Scharf JM, Sklar P, Sullivan PF, Tuomilehto J, Tsuang MT, Watkins HC, Wilson JG, Daly MJ, MacArthur DG, Exome Aggregation Consortium Nature 27535533 Nature 2016 Aug 18 https://www.ncbi.nlm.nih.gov/pubmed/27535533
Landscape of X chromosome inactivation across human tissues. Tukiainen T, Villani AC, Yen A, Rivas MA, Marshall JL, Satija R, Aguirre M, Gauthier L, Fleharty M, Kirby A, Cummings BB, Castel SE, Karczewski KJ, Aguet F, Byrnes A, GTEx Consortium, Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group, Statistical Methods groups—Analysis Working Group, Enhancing GTEx (eGTEx) groups, NIH Common Fund, NIH/NCI, NIH/NHGRI, NIH/NIMH, NIH/NIDA, Biospecimen Collection Source Site—NDRI, Biospecimen Collection Source Site—RPCI, Biospecimen Core Resource—VARI, Brain Bank Repository—University of Miami Brain Endowment Bank, Leidos Biomedical—Project Management, ELSI Study, Genome Browser Data Integration &Visualization—EBI, Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz, Lappalainen T, Regev A, Ardlie KG, Hacohen N, MacArthur DG Nature 29022598 Nature 2017 Oct 11 https://www.ncbi.nlm.nih.gov/pubmed/29022598
Quantifying prion disease penetrance using large population control cohorts. Minikel EV, Vallabh SM, Lek M, Estrada K, Samocha KE, Sathirapongsasuti JF, McLean CY, Tung JY, Yu LP, Gambetti P, Blevins J, Zhang S, Cohen Y, Chen W, Yamada M, Hamaguchi T, Sanjo N, Mizusawa H, Nakamura Y, Kitamoto T, Collins SJ, Boyd A, Will RG, Knight R, Ponto C, Zerr I, Kraus TF, Eigenbrod S, Giese A, Calero M, de Pedro-Cuesta J, Haïk S, Laplanche JL, Bouaziz-Amar E, Brandel JP, Capellari S, Parchi P, Poleggi A, Ladogana A, O'Donnell-Luria AH, Karczewski KJ, Marshall JL, Boehnke M, Laakso M, Mohlke KL, Kähler A, Chambert K, McCarroll S, Sullivan PF, Hultman CM, Purcell SM, Sklar P, van der Lee SJ, Rozemuller A, Jansen C, Hofman A, Kraaij R, van Rooij JG, Ikram MA, Uitterlinden AG, van Duijn CM, Exome Aggregation Consortium (ExAC), Daly MJ, MacArthur DG Science translational medicine 26791950 Sci Transl Med 2016 Jan 20 https://www.ncbi.nlm.nih.gov/pubmed/26791950
Variant interpretation using population databases: Lessons from gnomAD. Gudmundsson S, Singer-Berk M, Watts NA, Phu W, Goodrich JK, Solomonson M, Genome Aggregation Database Consortium, Rehm HL, MacArthur DG, O'Donnell-Luria A Human mutation 34859531 Hum Mutat 2022 Aug https://www.ncbi.nlm.nih.gov/pubmed/34859531
Reappraisal of variants previously linked with sudden infant death syndrome: results from three population-based cohorts. Paludan-Müller C, Ghouse J, Vad OB, Herfelt CB, Lundegaard P, Ahlberg G, Schmitt N, Svendsen JH, Haunsø S, Bundgaard H, Hansen T, Kanters JK, Olesen MS European journal of human genetics : EJHG 31043699 Eur J Hum Genet 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/31043699
Transcript expression-aware annotation improves rare variant interpretation. Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J, Satterstrom FK, O'Donnell-Luria AH, Poterba T, Seed C, Solomonson M, Alföldi J, Genome Aggregation Database Production Team, Genome Aggregation Database Consortium, Daly MJ, MacArthur DG Nature 32461655 Nature 2020 May https://www.ncbi.nlm.nih.gov/pubmed/32461655
The Scalable Variant Call Representation: Enabling Genetic Analysis Beyond One Million Genomes. Poterba T, Vittal C, King D, Goldstein D, Goldstein JI, Schultz P, Karczewski KJ, Seed C, Neale BM bioRxiv : the preprint server for biology 38260295 bioRxiv 2024 Jan 10 https://www.ncbi.nlm.nih.gov/pubmed/38260295
Achieving human and machine accessibility of cited data in scholarly publications. Starr J, Castro E, Crosas M, Dumontier M, Downs RR, Duerr R, Haak LL, Haendel M, Herman I, Hodson S, Hourclé J, Kratz JE, Lin J, Nielsen LH, Nurnberger A, Proell S, Rauber A, Sacchi S, Smith A, Taylor M, Clark T PeerJ. Computer science 26167542 PeerJ Comput Sci 2015 https://www.ncbi.nlm.nih.gov/pubmed/26167542
Toward a complete dataset of drug-drug interaction information from publicly available sources. Ayvaz S, Horn J, Hassanzadeh O, Zhu Q, Stan J, Tatonetti NP, Vilar S, Brochhausen M, Samwald M, Rastegar-Mojarad M, Dumontier M, Boyce RD Journal of biomedical informatics 25917055 J Biomed Inform 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/25917055
EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY. Haynes WA, Vallania F, Liu C, Bongen E, Tomczak A, Andres-Terrè M, Lofgren S, Tam A, Deisseroth CA, Li MD, Sweeney TE, Khatri P Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 27896970 Pac Symp Biocomput 2017 https://www.ncbi.nlm.nih.gov/pubmed/27896970
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. Martínez-Romero M, O'Connor MJ, Shankar RD, Panahiazar M, Willrett D, Egyedi AL, Gevaert O, Graybeal J, Musen MA AMIA ... Annual Symposium proceedings. AMIA Symposium 29854196 AMIA Annu Symp Proc 2017 https://www.ncbi.nlm.nih.gov/pubmed/29854196
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. Bukhari SAC, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA, Rubelt F, Cheung KH, Kleinstein SH Frontiers in immunology 30166985 Front Immunol 2018 https://www.ncbi.nlm.nih.gov/pubmed/30166985
Unique transcriptomic response to sepsis is observed among patients of different age groups. Raymond SL, López MC, Baker HV, Larson SD, Efron PA, Sweeney TE, Khatri P, Moldawer LL, Wynn JL PloS one 28886074 PLoS One 2017 https://www.ncbi.nlm.nih.gov/pubmed/28886074
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. Martínez-Romero M, Jonquet C, O'Connor MJ, Graybeal J, Pazos A, Musen MA Journal of biomedical semantics 28592275 J Biomed Semantics 2017 Jun 7 https://www.ncbi.nlm.nih.gov/pubmed/28592275
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. Gonçalves RS, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference 32219223 Semant Web ISWC 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/32219223
Semantic concept schema of the linear mixed model of experimental observations. Ćwiek-Kupczyńska H, Filipiak K, Markiewicz A, Rocca-Serra P, Gonzalez-Beltran AN, Sansone SA, Millet EJ, van Eeuwijk F, Ławrynowicz A, Krajewski P Scientific data 32109232 Sci Data 2020 Feb 27 https://www.ncbi.nlm.nih.gov/pubmed/32109232
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. Bukhari SAC, Martínez-Romero M, O' Connor MJ, Egyedi AL, Willrett D, Graybeal J, Musen MA, Cheung KH, Kleinstein SH BMC bioinformatics 30012108 BMC Bioinformatics 2018 Jul 16 https://www.ncbi.nlm.nih.gov/pubmed/30012108
FAIRsharing as a community approach to standards, repositories and policies. Sansone SA, McQuilton P, Rocca-Serra P, Gonzalez-Beltran A, Izzo M, Lister AL, Thurston M, FAIRsharing Community Nature biotechnology 30940948 Nat Biotechnol 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/30940948
Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). Panahiazar M, Dumontier M, Gevaert O Journal of biomedical informatics 28625880 J Biomed Inform 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/28625880
Methods to increase reproducibility in differential gene expression via meta-analysis. Sweeney TE, Haynes WA, Vallania F, Ioannidis JP, Khatri P Nucleic acids research 27634930 Nucleic Acids Res 2017 Jan 9 https://www.ncbi.nlm.nih.gov/pubmed/27634930
Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. Sweeney TE, Braviak L, Tato CM, Khatri P The Lancet. Respiratory medicine 26907218 Lancet Respir Med 2016 Mar https://www.ncbi.nlm.nih.gov/pubmed/26907218
Obstacles to the reuse of study metadata in ClinicalTrials.gov. Miron L, Gonçalves RS, Musen MA Scientific data 33339830 Sci Data 2020 Dec 18 https://www.ncbi.nlm.nih.gov/pubmed/33339830
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Martínez-Romero M, O'Connor MJ, Egyedi AL, Willrett D, Hardi J, Graybeal J, Musen MA Database : the journal of biological databases and curation 31210270 Database (Oxford) 2019 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/31210270
Validation of the Sepsis MetaScore for Diagnosis of Neonatal Sepsis. Sweeney TE, Wynn JL, Cernada M, Serna E, Wong HR, Baker HV, Vento M, Khatri P Journal of the Pediatric Infectious Diseases Society 28419265 J Pediatric Infect Dis Soc 2018 May 15 https://www.ncbi.nlm.nih.gov/pubmed/28419265
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. McMurry JA, Juty N, Blomberg N, Burdett T, Conlin T, Conte N, Courtot M, Deck J, Dumontier M, Fellows DK, Gonzalez-Beltran A, Gormanns P, Grethe J, Hastings J, Hériché JK, Hermjakob H, Ison JC, Jimenez RC, Jupp S, Kunze J, Laibe C, Le Novère N, Malone J, Martin MJ, McEntyre JR, Morris C, Muilu J, Müller W, Rocca-Serra P, Sansone SA, Sariyar M, Snoep JL, Soiland-Reyes S, Stanford NJ, Swainston N, Washington N, Williams AR, Wimalaratne SM, Winfree LM, Wolstencroft K, Goble C, Mungall CJ, Haendel MA, Parkinson H PLoS biology 28662064 PLoS Biol 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28662064
Septic Cardiomyopathy: Getting to the Heart of the Matter. Sweeney TE, Khatri P Critical care medicine 28212222 Crit Care Med 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/28212222
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Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. Stathias V, Koleti A, Vidović D, Cooper DJ, Jagodnik KM, Terryn R, Forlin M, Chung C, Torre D, Ayad N, Medvedovic M, Ma'ayan A, Pillai A, Schürer SC Scientific data 29917015 Sci Data 2018 Jun 19 https://www.ncbi.nlm.nih.gov/pubmed/29917015
Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters. Sweeney TE, Azad TD, Donato M, Haynes WA, Perumal TM, Henao R, Bermejo-Martin JF, Almansa R, Tamayo E, Howrylak JA, Choi A, Parnell GP, Tang B, Nichols M, Woods CW, Ginsburg GS, Kingsmore SF, Omberg L, Mangravite LM, Wong HR, Tsalik EL, Langley RJ, Khatri P Critical care medicine 29537985 Crit Care Med 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/29537985
Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses. Andres-Terre M, McGuire HM, Pouliot Y, Bongen E, Sweeney TE, Tato CM, Khatri P Immunity 26682989 Immunity 2015 Dec 15 https://www.ncbi.nlm.nih.gov/pubmed/26682989
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Cell-centred meta-analysis reveals baseline predictors of anti-TNFα non-response in biopsy and blood of patients with IBD. Gaujoux R, Starosvetsky E, Maimon N, Vallania F, Bar-Yoseph H, Pressman S, Weisshof R, Goren I, Rabinowitz K, Waterman M, Yanai H, Dotan I, Sabo E, Chowers Y, Khatri P, Shen-Orr SS, Israeli IBD research Network (IIRN) Gut 29618496 Gut 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/29618496
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Adaptive Signal Recovery on Graphs via Harmonic Analysis for Experimental Design in Neuroimaging. Kim WH, Hwang SJ, Adluru N, Johnson SC, Singh V Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision 27807594 Comput Vis ECCV 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/27807594
Coupled Harmonic Bases for Longitudinal Characterization of Brain Networks. Hwang SJ, Adluru N, Collins MD, Ravi SN, Bendlin BB, Johnson SC, Singh V Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 27812274 Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2016 Jun-Jul https://www.ncbi.nlm.nih.gov/pubmed/27812274
Mammography Screening: Gaps in Patient's and Physician's Needs for Shared Decision-Making. DuBenske LL, Schrager S, McDowell H, Wilke LG, Trentham-Dietz A, Burnside ES The breast journal 28252231 Breast J 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/28252231
Latent Variable Graphical Model Selection using Harmonic Analysis: Applications to the Human Connectome Project (HCP). Kim WH, Kim HJ, Adluru N, Singh V Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 28255221 Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/28255221
Mapping Murine Corneal Neovascularization and Weight Loss Virulence Determinants in the Herpes Simplex Virus 1 Genome and the Detection of an Epistatic Interaction between the UL and IRS/US Regions. Lee K, Kolb AW, Larsen I, Craven M, Brandt CR Journal of virology 27384650 J Virol 2016 Sep 15 https://www.ncbi.nlm.nih.gov/pubmed/27384650
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Statistical tests and identifiability conditions for pooling and analyzing multisite datasets. Zhou HH, Singh V, Johnson SC, Wahba G, Alzheimer’s Disease Neuroimaging Initiative Proceedings of the National Academy of Sciences of the United States of America 29386387 Proc Natl Acad Sci U S A 2018 Feb 13 https://www.ncbi.nlm.nih.gov/pubmed/29386387
Hypothesis Testing in Unsupervised Domain Adaptation with Applications in Alzheimer's Disease. Zhou HH, Ravi SN, Ithapu VK, Johnson SC, Wahba G, Singh V Advances in neural information processing systems 29308004 Adv Neural Inf Process Syst 2016 https://www.ncbi.nlm.nih.gov/pubmed/29308004
The Incremental Multiresolution Matrix Factorization Algorithm. Ithapu VK, Kondor R, Johnson SC, Singh V Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 29416293 Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2017 Jul https://www.ncbi.nlm.nih.gov/pubmed/29416293
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A Probabilistic Model to Support Radiologists' Classification Decisions in Mammography Practice. Zeng J, Gimenez F, Burnside ES, Rubin DL, Shachter R Medical decision making : an international journal of the Society for Medical Decision Making 30819048 Med Decis Making 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/30819048
Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments. Bacher R, Leng N, Chu LF, Ni Z, Thomson JA, Kendziorski C, Stewart R BMC bioinformatics 30326833 BMC Bioinformatics 2018 Oct 16 https://www.ncbi.nlm.nih.gov/pubmed/30326833
atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding. Shin S, Hudson R, Harrison C, Craven M, Keleş S Bioinformatics (Oxford, England) 30534948 Bioinformatics 2019 Aug 1 https://www.ncbi.nlm.nih.gov/pubmed/30534948
Improving breast cancer risk prediction by using demographic risk factors, abnormality features on mammograms and genetic variants. Feld SI, Woo KM, Alexandridis R, Wu Y, Liu J, Peissig P, Onitilo AA, Cox J, Page CD, Burnside ES AMIA ... Annual Symposium proceedings. AMIA Symposium 30815167 AMIA Annu Symp Proc 2018 https://www.ncbi.nlm.nih.gov/pubmed/30815167
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Structure-Leveraged Methods in Breast Cancer Risk Prediction. Fan J, Wu Y, Yuan M, Page D, Liu J, Ong IM, Peissig P, Burnside E Journal of machine learning research : JMLR 28559747 J Mach Learn Res 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/28559747
Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data. Shin S, Keleş S Statistics in biosciences 28781711 Stat Biosci 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28781711
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A Simple Approach to Shared Decision Making in Cancer Screening. Schrager SB, Phillips G, Burnside E Family practice management 28671358 Fam Pract Manag 2017 May/Jun https://www.ncbi.nlm.nih.gov/pubmed/28671358
Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data. Kuang Z, Thomson J, Caldwell M, Peissig P, Stewart R, Page D IJCAI : proceedings of the conference 28392671 IJCAI (U S) 2016 Jul https://www.ncbi.nlm.nih.gov/pubmed/28392671
Exercise ameliorates deficits in neural microstructure in a Disc1 model of psychiatric illness. Barnett BR, Anderson JM, Torres-Velázquez M, Yi SY, Rowley PA, Yu JJ Magnetic resonance imaging 31103832 Magn Reson Imaging 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/31103832
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Machine Learning Assisted Discovery of Novel Predictive Lab Tests Using Electronic Health Record Data. Kleiman R, Kuusisto F, Ross I, Peissig PL, Stewart R, Page CD, Weiss J AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 31259012 AMIA Jt Summits Transl Sci Proc 2019 https://www.ncbi.nlm.nih.gov/pubmed/31259012
Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation. Guerrero JM, Adluru N, Bendlin BB, Goldsmith HH, Schaefer SM, Davidson RJ, Kecskemeti SR, Zhang H, Alexander AL PloS one 31553719 PLoS One 2019 https://www.ncbi.nlm.nih.gov/pubmed/31553719
Gene loci associated with insulin secretion in islets from non-diabetic mice. Keller MP, Rabaglia ME, Schueler KL, Stapleton DS, Gatti DM, Vincent M, Mitok KA, Wang Z, Ishimura T, Simonett SP, Emfinger CH, Das R, Beck T, Kendziorski C, Broman KW, Yandell BS, Churchill GA, Attie AD The Journal of clinical investigation 31343992 J Clin Invest 2019 Jul 25 https://www.ncbi.nlm.nih.gov/pubmed/31343992
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Modeling Asthma Exacerbations from Electronic Health Records. Cobian A, Abbott M, Sood A, Sverchkov Y, Hanrahan L, Guilbert T, Craven M AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 32477628 AMIA Jt Summits Transl Sci Proc 2020 https://www.ncbi.nlm.nih.gov/pubmed/32477628
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Physarum Powered Differentiable Linear Programming Layers and Applications. Meng Z, Ravi SN, Singh V Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence 34484857 Proc AAAI Conf Artif Intell 2021 Feb https://www.ncbi.nlm.nih.gov/pubmed/34484857
Nyströmformer: A Nystöm-based Algorithm for Approximating Self-Attention. Xiong Y, Zeng Z, Chakraborty R, Tan M, Fung G, Li Y, Singh V Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence 34745767 Proc AAAI Conf Artif Intell 2021 https://www.ncbi.nlm.nih.gov/pubmed/34745767
Genetic and environmental influences of variation in diffusion MRI measures of white matter microstructure. Luo Z, Adluru N, Dean DC 3rd, Alexander AL, Goldsmith HH Brain structure & function 34585302 Brain Struct Funct 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/34585302
Riemannian Variance Filtering: An Independent Filtering Scheme for Statistical Tests on Manifold-valued Data. Zheng L, Kim HJ, Adluru N, Newton MA, Singh V Conference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops 32355573 Conf Comput Vis Pattern Recognit Workshops 2017 Jul https://www.ncbi.nlm.nih.gov/pubmed/32355573
Sampling-free Uncertainty Estimation in Gated Recurrent Units with Applications to Normative Modeling in Neuroimaging. Hwang SJ, Mehta RR, Kim HJ, Johnson SC, Singh V Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence 32405271 Uncertain Artif Intell 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/32405271
Conditional Recurrent Flow: Conditional Generation of Longitudinal Samples with Applications to Neuroimaging. Hwang SJ, Tao Z, Kim WH, Singh V Proceedings. IEEE International Conference on Computer Vision 32405276 Proc IEEE Int Conf Comput Vis 2019 Oct-Nov https://www.ncbi.nlm.nih.gov/pubmed/32405276
Scaling Recurrent Models via Orthogonal Approximations in Tensor Trains. Mehta R, Chakraborty R, Xiong Y, Singh V Proceedings. IEEE International Conference on Computer Vision 35291675 Proc IEEE Int Conf Comput Vis 2019 Oct-Nov https://www.ncbi.nlm.nih.gov/pubmed/35291675
Combined Hypothesis Testing on Graphs with Applications to Gene Set Enrichment Analysis. Wang S, Yuan M Journal of the American Statistical Association 35431372 J Am Stat Assoc 2019 https://www.ncbi.nlm.nih.gov/pubmed/35431372
Applying family analyses to electronic health records to facilitate genetic research. Huang X, Elston RC, Rosa GJ, Mayer J, Ye Z, Kitchner T, Brilliant MH, Page D, Hebbring SJ Bioinformatics (Oxford, England) 28968884 Bioinformatics 2018 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/28968884
Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach. Shulei Wang, Arena ET, Eliceiri KW, Ming Yuan IEEE transactions on image processing : a publication of the IEEE Signal Processing Society 29053465 IEEE Trans Image Process 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/29053465
Linkage of the ACR National Mammography Database to the Network of State Cancer Registries: Proof of Concept Evaluation by the ACR National Mammography Database Committee. Zuley ML, Nishikawa RM, Lee CS, Burnside E, Rosenberg R, Sickles EA, Berg W, Leung J, Harvey J, Sengupta D, Gur D Journal of the American College of Radiology : JACR 30100161 J Am Coll Radiol 2019 Jan https://www.ncbi.nlm.nih.gov/pubmed/30100161
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Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure. P Tafti A, Badger J, LaRose E, Shirzadi E, Mahnke A, Mayer J, Ye Z, Page D, Peissig P JMIR medical informatics 29222076 JMIR Med Inform 2017 Dec 8 https://www.ncbi.nlm.nih.gov/pubmed/29222076
Gut microbiome populations are associated with structure-specific changes in white matter architecture. Ong IM, Gonzalez JG, McIlwain SJ, Sawin EA, Schoen AJ, Adluru N, Alexander AL, Yu JJ Translational psychiatry 29317592 Transl Psychiatry 2018 Jan 10 https://www.ncbi.nlm.nih.gov/pubmed/29317592
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Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. Chu LF, Leng N, Zhang J, Hou Z, Mamott D, Vereide DT, Choi J, Kendziorski C, Stewart R, Thomson JA Genome biology 27534536 Genome Biol 2016 Aug 17 https://www.ncbi.nlm.nih.gov/pubmed/27534536
Screening Breast MRI Outcomes in Routine Clinical Practice: Comparison to BI-RADS Benchmarks. Strigel RM, Rollenhagen J, Burnside ES, Elezaby M, Fowler AM, Kelcz F, Salkowski L, DeMartini WB Academic radiology 27986508 Acad Radiol 2017 Apr https://www.ncbi.nlm.nih.gov/pubmed/27986508
Modeling the Temporal Evolution of Postoperative Complications. Feld SI, Cobian AG, Tevis SE, Kennedy GD, Craven MW AMIA ... Annual Symposium proceedings. AMIA Symposium 28269851 AMIA Annu Symp Proc 2016 https://www.ncbi.nlm.nih.gov/pubmed/28269851
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. Roy S, Sridharan R Genome research 28424352 Genome Res 2017 Jul https://www.ncbi.nlm.nih.gov/pubmed/28424352
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Computational Drug Repositioning Using Continuous Self-Controlled Case Series. Kuang Z, Thomson J, Caldwell M, Peissig P, Stewart R, Page D KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 28316874 KDD 2016 Aug https://www.ncbi.nlm.nih.gov/pubmed/28316874
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Multiset Statistics for Gene Set Analysis. Newton MA, Wang Z Annual review of statistics and its application 25914887 Annu Rev Stat Appl 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/25914887
MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays. Li H, Zhu Y, Burnside ES, Drukker K, Hoadley KA, Fan C, Conzen SD, Whitman GJ, Sutton EJ, Net JM, Ganott M, Huang E, Morris EA, Perou CM, Ji Y, Giger ML Radiology 27144536 Radiology 2016 Nov https://www.ncbi.nlm.nih.gov/pubmed/27144536
Discriminatory power of common genetic variants in personalized breast cancer diagnosis. Wu Y, Abbey CK, Liu J, Ong I, Peissig P, Onitilo AA, Fan J, Yuan M, Burnside ES Proceedings of SPIE--the International Society for Optical Engineering 27279675 Proc SPIE Int Soc Opt Eng 2016 Feb 27 https://www.ncbi.nlm.nih.gov/pubmed/27279675
Statistical Inference Models for Image Datasets with Systematic Variations. Kim WH, Bendlin BB, Chung MK, Johnson SC, Singh V Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 26989336 Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/26989336
A Secondary Analysis of Panoramic Radiographs Reveals Hotspots in the Maxillofacial Region Associated with Diabetes. Pack GD, Craven M, Acharya A AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 32477669 AMIA Jt Summits Transl Sci Proc 2020 https://www.ncbi.nlm.nih.gov/pubmed/32477669
A geometric framework for statistical analysis of trajectories with distinct temporal spans. Chakraborty R, Singh V, Adluru N, Vemuri BC Proceedings. IEEE International Conference on Computer Vision 32514257 Proc IEEE Int Conf Comput Vis 2017 Oct https://www.ncbi.nlm.nih.gov/pubmed/32514257
Dilated Convolutional Neural Networks for Sequential Manifold-valued Data. Zhen X, Chakraborty R, Vogt N, Bendlin BB, Singh V Proceedings. IEEE International Conference on Computer Vision 32405275 Proc IEEE Int Conf Comput Vis 2019 Oct-Nov https://www.ncbi.nlm.nih.gov/pubmed/32405275
Efficient Relative Attribute Learning using Graph Neural Networks. Meng Z, Adluru N, Kim HJ, Fung G, Singh V Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision 32318687 Comput Vis ECCV 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/32318687
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When can Multi-Site Datasets be Pooled for Regression? Hypothesis Tests, ℓ (2)-consistency and Neuroscience Applications. Zhou HH, Zhang Y, Ithapu VK, Johnson SC, Wahba G, Singh V Proceedings of machine learning research 31742253 Proc Mach Learn Res 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/31742253
Development of an online, publicly accessible naive Bayesian decision support tool for mammographic mass lesions based on the American College of Radiology (ACR) BI-RADS lexicon. Benndorf M, Kotter E, Langer M, Herda C, Wu Y, Burnside ES European radiology 25576230 Eur Radiol 2015 Jun https://www.ncbi.nlm.nih.gov/pubmed/25576230
Multivariate General Linear Models (MGLM) on Riemannian Manifolds with Applications to Statistical Analysis of Diffusion Weighted Images. Kim HJ, Adluru N, Collins MD, Chung MK, Bendlin BB, Johnson SC, Davidson RJ, Singh V Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 25580070 Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2014 Jun 23 https://www.ncbi.nlm.nih.gov/pubmed/25580070
Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism. Papale LA, Zhang Q, Li S, Chen K, Keleş S, Alisch RS Human molecular genetics 26423458 Hum Mol Genet 2015 Dec 15 https://www.ncbi.nlm.nih.gov/pubmed/26423458
CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology. Bernstein MN, Ma Z, Gleicher M, Dewey CN iScience 33364592 iScience 2021 Jan 22 https://www.ncbi.nlm.nih.gov/pubmed/33364592
Generating Accurate Pseudo-labels in Semi-Supervised Learning and Avoiding Overconfident Predictions via Hermite Polynomial Activations. Lokhande VS, Tasneeyapant S, Venkatesh A, Ravi SN, Singh V Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 33462534 Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2020 Jun https://www.ncbi.nlm.nih.gov/pubmed/33462534
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Comparing Mammography Abnormality Features to Genetic Variants in the Prediction of Breast Cancer in Women Recommended for Breast Biopsy. Burnside ES, Liu J, Wu Y, Onitilo AA, McCarty CA, Page CD, Peissig PL, Trentham-Dietz A, Kitchner T, Fan J, Yuan M Academic radiology 26514439 Acad Radiol 2016 Jan https://www.ncbi.nlm.nih.gov/pubmed/26514439
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Multi-resolution statistical analysis of brain connectivity graphs in preclinical Alzheimer's disease. Kim WH, Adluru N, Chung MK, Okonkwo OC, Johnson SC, B Bendlin B, Singh V NeuroImage 26025289 Neuroimage 2015 Sep https://www.ncbi.nlm.nih.gov/pubmed/26025289
Dual PI3K/mTOR Inhibition in Colorectal Cancers with APC and PIK3CA Mutations. Foley TM, Payne SN, Pasch CA, Yueh AE, Van De Hey DR, Korkos DP, Clipson L, Maher ME, Matkowskyj KA, Newton MA, Deming DA Molecular cancer research : MCR 28184015 Mol Cancer Res 2017 Feb 9 https://www.ncbi.nlm.nih.gov/pubmed/28184015
Experimental Design on a Budget for Sparse Linear Models and Applications. Ravi SN, Ithapu VK, Johnson SC, Singh V JMLR workshop and conference proceedings 28479945 JMLR Workshop Conf Proc 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/28479945
Association of longitudinal white matter degeneration and cerebrospinal fluid biomarkers of neurodegeneration, inflammation and Alzheimer's disease in late-middle-aged adults. Racine AM, Merluzzi AP, Adluru N, Norton D, Koscik RL, Clark LR, Berman SE, Nicholas CR, Asthana S, Alexander AL, Blennow K, Zetterberg H, Kim WH, Singh V, Carlsson CM, Bendlin BB, Johnson SC Brain imaging and behavior 28600739 Brain Imaging Behav 2019 Feb https://www.ncbi.nlm.nih.gov/pubmed/28600739
A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets. Zuo C, Chen K, Keleş S Journal of computational biology : a journal of computational molecular cell biology 27835030 J Comput Biol 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/27835030
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Utility of BI-RADS Assessment Category 4 Subdivisions for Screening Breast MRI. Strigel RM, Burnside ES, Elezaby M, Fowler AM, Kelcz F, Salkowski LR, DeMartini WB AJR. American journal of roentgenology 28792802 AJR Am J Roentgenol 2017 Jun https://www.ncbi.nlm.nih.gov/pubmed/28792802
Abundant Inverse Regression using Sufficient Reduction and its Applications. Kim HJ, Smith BM, Adluru N, Dyer CR, Johnson SC, Singh V Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision 27796010 Comput Vis ECCV 2016 Oct https://www.ncbi.nlm.nih.gov/pubmed/27796010
A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions. Fotuhi Siahpirani A, Ay F, Roy S Genome biology 27233632 Genome Biol 2016 May 27 https://www.ncbi.nlm.nih.gov/pubmed/27233632
MULTI-RESOLUTION STATISTICAL ANALYSIS ON GRAPH STRUCTURED DATA IN NEUROIMAGING. Kim WH, Singh V, Chung MK, Adluru N, Bendlin BB, Johnson SC Proceedings. IEEE International Symposium on Biomedical Imaging 27284387 Proc IEEE Int Symp Biomed Imaging 2015 Apr https://www.ncbi.nlm.nih.gov/pubmed/27284387
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Using automatically extracted information from mammography reports for decision-support. Bozkurt S, Gimenez F, Burnside ES, Gulkesen KH, Rubin DL Journal of biomedical informatics 27388877 J Biomed Inform 2016 Aug https://www.ncbi.nlm.nih.gov/pubmed/27388877
A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization. Kuang Z, Bao Y, Thomson J, Caldwell M, Peissig P, Stewart R, Willett R, Page D Methods in molecular biology (Clifton, N.J.) 30547447 Methods Mol Biol 2019 https://www.ncbi.nlm.nih.gov/pubmed/30547447
Stochastic Learning for Sparse Discrete Markov Random Fields with Controlled Gradient Approximation Error. Geng S, Kuang Z, Liu J, Wright S, Page D Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence 30555282 Uncertain Artif Intell 2018 Aug https://www.ncbi.nlm.nih.gov/pubmed/30555282
Pharmacovigilance via Baseline Regularization with Large-Scale Longitudinal Observational Data. Kuang Z, Peissig P, Costa VS, Maclin R, Page D KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 29755826 KDD 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/29755826
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BrainAGE and regional volumetric analysis of a Buddhist monk: a longitudinal MRI case study. Adluru N, Korponay CH, Norton DL, Goldman RI, Davidson RJ Neurocase 32100616 Neurocase 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/32100616
Context-Specific Nested Effects Models. Sverchkov Y, Ho YH, Gasch A, Craven M Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) 30680375 Res Comput Mol Biol 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/30680375
Sex-specific deficits in neurite density and white matter integrity are associated with targeted disruption of exon 2 of the Disc1 gene in the rat. Barnett BR, Torres-Velázquez M, Yi SY, Rowley PA, Sawin EA, Rubinstein CD, Krentz K, Anderson JM, Bakshi VP, Yu JJ Translational psychiatry 30745562 Transl Psychiatry 2019 Feb 11 https://www.ncbi.nlm.nih.gov/pubmed/30745562
Cortical Microstructural Alterations in Mild Cognitive Impairment and Alzheimer's Disease Dementia. Vogt NM, Hunt JF, Adluru N, Dean DC, Johnson SC, Asthana S, Yu JJ, Alexander AL, Bendlin BB Cerebral cortex (New York, N.Y. : 1991) 31833550 Cereb Cortex 2020 May 14 https://www.ncbi.nlm.nih.gov/pubmed/31833550
Learning High-dimensional Generalized Linear Autoregressive Models. Hall EC, Raskutti G, Willett RM IEEE transactions on information theory 31839683 IEEE Trans Inf Theory 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/31839683
Ancestral Folate Promotes Neuronal Regeneration in Serial Generations of Progeny. Patel NJ, Hogan KJ, Rizk E, Stewart K, Madrid A, Vadakkadath Meethal S, Alisch R, Borth L, Papale LA, Ondoma S, Gorges LR, Weber K, Lake W, Bauer A, Hariharan N, Kuehn T, Cook T, Keles S, Newton MA, Iskandar BJ Molecular neurobiology 31919777 Mol Neurobiol 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/31919777
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DUAL-GLOW: Conditional Flow-Based Generative Model for Modality Transfer. Sun H, Mehta R, Zhou HH, Huang Z, Johnson SC, Prabhakaran V, Singh V Proceedings. IEEE International Conference on Computer Vision 35125977 Proc IEEE Int Conf Comput Vis 2019 Oct-Nov https://www.ncbi.nlm.nih.gov/pubmed/35125977
Clinical translational neuroimaging of the antioxidant effect of N-acetylcysteine on neural microstructure. Yi SY, Barnett BR, Poetzel MJ, Stowe NA, Yu JJ Magnetic resonance in medicine 34590731 Magn Reson Med 2022 Feb https://www.ncbi.nlm.nih.gov/pubmed/34590731
Dimension constraints improve hypothesis testing for large-scale, graph-associated, brain-image data. Vo T, Mishra A, Ithapu V, Singh V, Newton MA Biostatistics (Oxford, England) 33616173 Biostatistics 2022 Jul 18 https://www.ncbi.nlm.nih.gov/pubmed/33616173
Optimizing Nondecomposable Data Dependent Regularizers via Lagrangian Reparameterization Offers Significant Performance and Efficiency Gains. Ravi SN, Venkatesh A, Fung GM, Singh V Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence 34094697 Proc AAAI Conf Artif Intell 2020 Jun 16 https://www.ncbi.nlm.nih.gov/pubmed/34094697
Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis. Zheng Z, Mergaert AM, Fahmy LM, Bawadekar M, Holmes CL, Ong IM, Bridges AJ, Newton MA, Shelef MA Arthritis & rheumatology (Hoboken, N.J.) 31397047 Arthritis Rheumatol 2020 Feb https://www.ncbi.nlm.nih.gov/pubmed/31397047
Machine learning for phenotyping opioid overdose events. Badger J, LaRose E, Mayer J, Bashiri F, Page D, Peissig P Journal of biomedical informatics 31028874 J Biomed Inform 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/31028874
Age-based versus Risk-based Mammography Screening in Women 40-49 Years Old: A Cross-sectional Study. Burnside ES, Trentham-Dietz A, Shafer CM, Hampton JM, Alagoz O, Cox JR, Mischo E, Schrager SB, Wilke LG Radiology 31184557 Radiology 2019 Aug https://www.ncbi.nlm.nih.gov/pubmed/31184557
Differentiable Optimization of Generalized Nondecomposable Functions using Linear Programs. Meng Z, Mukherjee L, Wu Y, Singh V, Ravi SN Advances in neural information processing systems 35387382 Adv Neural Inf Process Syst 2021 Dec https://www.ncbi.nlm.nih.gov/pubmed/35387382
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. Girard G, Rafael-Patiño J, Truffet R, Aydogan DB, Adluru N, Nair VA, Prabhakaran V, Bendlin BB, Alexander AL, Bosticardo S, Gabusi I, Ocampo-Pineda M, Battocchio M, Piskorova Z, Bontempi P, Schiavi S, Daducci A, Stafiej A, Ciupek D, Bogusz F, Pieciak T, Frigo M, Sedlar S, Deslauriers-Gauthier S, Kojčić I, Zucchelli M, Laghrissi H, Ji Y, Deriche R, Schilling KG, Landman BA, Cacciola A, Basile GA, Bertino S, Newlin N, Kanakaraj P, Rheault F, Filipiak P, Shepherd TM, Lin YC, Placantonakis DG, Boada FE, Baete SH, Hernández-Gutiérrez E, Ramírez-Manzanares A, Coronado-Leija R, Stack-Sánchez P, Concha L, Descoteaux M, Mansour L S, Seguin C, Zalesky A, Marshall K, Canales-Rodríguez EJ, Wu Y, Ahmad S, Yap PT, Théberge A, Gagnon F, Massi F, Fischi-Gomez E, Gardier R, Haro JLV, Pizzolato M, Caruyer E, Thiran JP NeuroImage 37330025 Neuroimage 2023 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/37330025
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Causal Structure Learning via Temporal Markov Networks. Barnard A, Page D Proceedings of machine learning research 40259924 Proc Mach Learn Res 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/40259924
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. Maffei C, Girard G, Schilling KG, Aydogan DB, Adluru N, Zhylka A, Wu Y, Mancini M, Hamamci A, Sarica A, Teillac A, Baete SH, Karimi D, Yeh FC, Yildiz ME, Gholipour A, Bihan-Poudec Y, Hiba B, Quattrone A, Quattrone A, Boshkovski T, Stikov N, Yap PT, de Luca A, Pluim J, Leemans A, Prabhakaran V, Bendlin BB, Alexander AL, Landman BA, Canales-Rodríguez EJ, Barakovic M, Rafael-Patino J, Yu T, Rensonnet G, Schiavi S, Daducci A, Pizzolato M, Fischi-Gomez E, Thiran JP, Dai G, Grisot G, Lazovski N, Puch S, Ramos M, Rodrigues P, Prčkovska V, Jones R, Lehman J, Haber SN, Yendiki A NeuroImage 35636227 Neuroimage 2022 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/35636227
On Statistical Analysis of Neuroimages with Imperfect Registration. Kim WH, Ravi SN, Johnson SC, Okonkwo OC, Singh V Proceedings. IEEE International Conference on Computer Vision 27042168 Proc IEEE Int Conf Comput Vis 2015 Dec https://www.ncbi.nlm.nih.gov/pubmed/27042168
Interpolation on the manifold of K component GMMs. Kim HJ, Adluru N, Banerjee M, Vemuri BC, Singh V Proceedings. IEEE International Conference on Computer Vision 27042169 Proc IEEE Int Conf Comput Vis 2015 Dec https://www.ncbi.nlm.nih.gov/pubmed/27042169
Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution. Gasch AP, Hose J, Newton MA, Sardi M, Yong M, Wang Z eLife 26949252 Elife 2016 Mar 7 https://www.ncbi.nlm.nih.gov/pubmed/26949252
A Projection free method for Generalized Eigenvalue Problem with a nonsmooth Regularizer. Hwang SJ, Collins MD, Ravi SN, Ithapu VK, Adluru N, Johnson SC, Singh V Proceedings. IEEE International Conference on Computer Vision 27081374 Proc IEEE Int Conf Comput Vis 2015 Dec https://www.ncbi.nlm.nih.gov/pubmed/27081374
Manifold-valued Dirichlet Processes. Kim HJ, Xu J, Vemuri BC, Singh V JMLR workshop and conference proceedings 26973982 JMLR Workshop Conf Proc 2015 Jul https://www.ncbi.nlm.nih.gov/pubmed/26973982
Statistical Methods for Latent Class Quantitative Trait Loci Mapping. Ye S, Bacher R, Keller MP, Attie AD, Kendziorski C Genetics 28550015 Genetics 2017 Jul https://www.ncbi.nlm.nih.gov/pubmed/28550015
Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics. Barger JL, Vann JM, Cray NL, Pugh TD, Mastaloudis A, Hester SN, Wood SM, Newton MA, Weindruch R, Prolla TA Aging cell 28556428 Aging Cell 2017 Aug https://www.ncbi.nlm.nih.gov/pubmed/28556428
Anxiety-related experience-dependent white matter structural differences in adolescence: A monozygotic twin difference approach. Adluru N, Luo Z, Van Hulle CA, Schoen AJ, Davidson RJ, Alexander AL, Goldsmith HH Scientific reports 28821748 Sci Rep 2017 Aug 18 https://www.ncbi.nlm.nih.gov/pubmed/28821748
Recombination Analysis of Herpes Simplex Virus 1 Reveals a Bias toward GC Content and the Inverted Repeat Regions. Lee K, Kolb AW, Sverchkov Y, Cuellar JA, Craven M, Brandt CR Journal of virology 25926637 J Virol 2015 Jul https://www.ncbi.nlm.nih.gov/pubmed/25926637
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A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C Genome biology 27782827 Genome Biol 2016 Oct 25 https://www.ncbi.nlm.nih.gov/pubmed/27782827
Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set. Li H, Zhu Y, Burnside ES, Huang E, Drukker K, Hoadley KA, Fan C, Conzen SD, Zuley M, Net JM, Sutton E, Whitman GJ, Morris E, Perou CM, Ji Y, Giger ML NPJ breast cancer 27853751 NPJ Breast Cancer 2016 https://www.ncbi.nlm.nih.gov/pubmed/27853751
Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress. Papale LA, Li S, Madrid A, Zhang Q, Chen L, Chopra P, Jin P, Keleş S, Alisch RS Neurobiology of disease 27576189 Neurobiol Dis 2016 Dec https://www.ncbi.nlm.nih.gov/pubmed/27576189
Quantifying predictive capability of electronic health records for the most harmful breast cancer. Wu Y, Fan J, Peissig P, Berg R, Tafti AP, Yin J, Yuan M, Page D, Cox J, Burnside ES Proceedings of SPIE--the International Society for Optical Engineering 29706685 Proc SPIE Int Soc Opt Eng 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/29706685
Anytime Exploration for Multi-armed Bandits using Confidence Information. Jun KS, Nowak R JMLR workshop and conference proceedings 29541329 JMLR Workshop Conf Proc 2016 Jun https://www.ncbi.nlm.nih.gov/pubmed/29541329
Data-Driven Mammography Screening Practices-Reply. Lee CS, Sickles EA, Burnside ES JAMA oncology 29242927 JAMA Oncol 2018 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/29242927
Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data. Guo W, Li H, Zhu Y, Lan L, Yang S, Drukker K, Morris E, Burnside E, Whitman G, Giger ML, Ji Y, Tcga Breast Phenotype Research Group Journal of medical imaging (Bellingham, Wash.) 26835491 J Med Imaging (Bellingham) 2015 Oct https://www.ncbi.nlm.nih.gov/pubmed/26835491
Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome. Hewitt KJ, Kim DH, Devadas P, Prathibha R, Zuo C, Sanalkumar R, Johnson KD, Kang YA, Kim JS, Dewey CN, Keles S, Bresnick EH Molecular cell 26073540 Mol Cell 2015 Jul 2 https://www.ncbi.nlm.nih.gov/pubmed/26073540
Backward multiple imputation estimation of the conditional lifetime expectancy function with application to censored human longevity data. Kong J, Klein BE, Klein R, Wahba G Proceedings of the National Academy of Sciences of the United States of America 26371300 Proc Natl Acad Sci U S A 2015 Sep 29 https://www.ncbi.nlm.nih.gov/pubmed/26371300
Leveraging Interaction between Genetic Variants and Mammographic Findings for Personalized Breast Cancer Diagnosis. Liu J, Wu Y, Ong I, Page D, Peissig P, McCarty C, Onitilo AA, Burnside E AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 26306250 AMIA Jt Summits Transl Sci Proc 2015 https://www.ncbi.nlm.nih.gov/pubmed/26306250
The conserved protective cyclic AMP-phosphodiesterase function PDE4B is expressed in the adenoma and adjacent normal colonic epithelium of mammals and silenced in colorectal cancer. Pleiman JK, Irving AA, Wang Z, Toraason E, Clipson L, Dove WF, Deming DA, Newton MA PLoS genetics 30188895 PLoS Genet 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/30188895
Practical Model Selection for Prospective Virtual Screening. Liu S, Alnammi M, Ericksen SS, Voter AF, Ananiev GE, Keck JL, Hoffmann FM, Wildman SA, Gitter A Journal of chemical information and modeling 30500183 J Chem Inf Model 2019 Jan 28 https://www.ncbi.nlm.nih.gov/pubmed/30500183
Collaboration Matters: Honey Bee Health as a Transdisciplinary Model for Understanding Real-World Complexity. Suryanarayanan S, Kleinman DL, Gratton C, Toth A, Guedot C, Groves R, Piechowski J, Moore B, Hagedorn D, Kauth D, Swan H, Celley M Bioscience 30524133 Bioscience 2018 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/30524133
Genetic Drivers of Pancreatic Islet Function. Keller MP, Gatti DM, Schueler KL, Rabaglia ME, Stapleton DS, Simecek P, Vincent M, Allen S, Broman AT, Bacher R, Kendziorski C, Broman KW, Yandell BS, Churchill GA, Attie AD Genetics 29567659 Genetics 2018 May https://www.ncbi.nlm.nih.gov/pubmed/29567659
Engineering induction of singular neural rosette emergence within hPSC-derived tissues. Knight GT, Lundin BF, Iyer N, Ashton LM, Sethares WA, Willett RM, Ashton RS eLife 30371350 Elife 2018 Oct 29 https://www.ncbi.nlm.nih.gov/pubmed/30371350
iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. Rojo C, Zhang Q, Keleş S Genetic epidemiology 31328826 Genet Epidemiol 2019 Oct https://www.ncbi.nlm.nih.gov/pubmed/31328826
Associations Between Positron Emission Tomography Amyloid Pathology and Diffusion Tensor Imaging Brain Connectivity in Pre-Clinical Alzheimer's Disease. Hwang SJ, Adluru N, Kim WH, Johnson SC, Bendlin BB, Singh V Brain connectivity 30255713 Brain Connect 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/30255713
Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data. Köksal AS, Beck K, Cronin DR, McKenna A, Camp ND, Srivastava S, MacGilvray ME, Bodík R, Wolf-Yadlin A, Fraenkel E, Fisher J, Gitter A Cell reports 30257219 Cell Rep 2018 Sep 25 https://www.ncbi.nlm.nih.gov/pubmed/30257219
A Natural Language Interface for Dissemination of Reproducible Biomedical Data Science. John RJL, Patel JM, Alexander AL, Singh V, Adluru N Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 32412016 Med Image Comput Comput Assist Interv 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/32412016
Recursive Feature Elimination by Sensitivity Testing. Escanilla NS, Hellerstein L, Kleiman R, Kuang Z, Shull JD, Page D Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications 31799516 Proc Int Conf Mach Learn Appl 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/31799516
Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. Barry C, Schmitz MT, Argus C, Bolin JM, Probasco MD, Leng N, Duffin BM, Steill J, Swanson S, McIntosh BE, Stewart R, Kendziorski C, Thomson JA, Bacher R PLoS computational biology 31815944 PLoS Comput Biol 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/31815944
SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins. Chen F, Keleş S Genome biology 32532357 Genome Biol 2020 Jun 12 https://www.ncbi.nlm.nih.gov/pubmed/32532357
Learning Invariant Representations using Inverse Contrastive Loss. Akash AK, Lokhande VS, Ravi SN, Singh V Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence 34405058 Proc AAAI Conf Artif Intell 2021 Feb https://www.ncbi.nlm.nih.gov/pubmed/34405058
On Training Deep 3D CNN Models with Dependent Samples in Neuroimaging. Xiong Y, Kim HJ, Tangirala B, Mehta R, Johnson SC, Singh V Information processing in medical imaging : proceedings of the ... conference 35125834 Inf Process Med Imaging 2019 May https://www.ncbi.nlm.nih.gov/pubmed/35125834
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The GA4GH Phenopacket schema defines a computable representation of clinical data. Jacobsen JOB, Baudis M, Baynam GS, Beckmann JS, Beltran S, Buske OJ, Callahan TJ, Chute CG, Courtot M, Danis D, Elemento O, Essenwanger A, Freimuth RR, Gargano MA, Groza T, Hamosh A, Harris NL, Kaliyaperumal R, Lloyd KCK, Khalifa A, Krawitz PM, Köhler S, Laraway BJ, Lehväslaiho H, Matalonga L, McMurry JA, Metke-Jimenez A, Mungall CJ, Munoz-Torres MC, Ogishima S, Papakonstantinou A, Piscia D, Pontikos N, Queralt-Rosinach N, Roos M, Sass J, Schofield PN, Seelow D, Siapos A, Smedley D, Smith LD, Steinhaus R, Sundaramurthi JC, Swietlik EM, Thun S, Vasilevsky NA, Wagner AH, Warner JL, Weiland C, GAGH Phenopacket Modeling Consortium, Haendel MA, Robinson PN Nature biotechnology 35705716 Nat Biotechnol 2022 Jun https://www.ncbi.nlm.nih.gov/pubmed/35705716
The Human Phenotype Ontology in 2024: phenotypes around the world. Gargano MA, Matentzoglu N, Coleman B, Addo-Lartey EB, Anagnostopoulos AV, Anderton J, Avillach P, Bagley AM, Bakštein E, Balhoff JP, Baynam G, Bello SM, Berk M, Bertram H, Bishop S, Blau H, Bodenstein DF, Botas P, Boztug K, Čady J, Callahan TJ, Cameron R, Carbon SJ, Castellanos F, Caufield JH, Chan LE, Chute CG, Cruz-Rojo J, Dahan-Oliel N, Davids JR, de Dieuleveult M, de Souza V, de Vries BBA, de Vries E, DePaulo JR, Derfalvi B, Dhombres F, Diaz-Byrd C, Dingemans AJM, Donadille B, Duyzend M, Elfeky R, Essaid S, Fabrizzi C, Fico G, Firth HV, Freudenberg-Hua Y, Fullerton JM, Gabriel DL, Gilmour K, Giordano J, Goes FS, Moses RG, Green I, Griese M, Groza T, Gu W, Guthrie J, Gyori B, Hamosh A, Hanauer M, Hanušová K, He YO, Hegde H, Helbig I, Holasová K, Hoyt CT, Huang S, Hurwitz E, Jacobsen JOB, Jiang X, Joseph L, Keramatian K, King B, Knoflach K, Koolen DA, Kraus ML, Kroll C, Kusters M, Ladewig MS, Lagorce D, Lai MC, Lapunzina P, Laraway B, Lewis-Smith D, Li X, Lucano C, Majd M, Marazita ML, Martinez-Glez V, McHenry TH, McInnis MG, McMurry JA, Mihulová M, Millett CE, Mitchell PB, Moslerová V, Narutomi K, Nematollahi S, Nevado J, Nierenberg AA, Čajbiková NN, Nurnberger JI Jr, Ogishima S, Olson D, Ortiz A, Pachajoa H, Perez de Nanclares G, Peters A, Putman T, Rapp CK, Rath A, Reese J, Rekerle L, Roberts AM, Roy S, Sanders SJ, Schuetz C, Schulte EC, Schulze TG, Schwarz M, Scott K, Seelow D, Seitz B, Shen Y, Similuk MN, Simon ES, Singh B, Smedley D, Smith CL, Smolinsky JT, Sperry S, Stafford E, Stefancsik R, Steinhaus R, Strawbridge R, Sundaramurthi JC, Talapova P, Tenorio Castano JA, Tesner P, Thomas RH, Thurm A, Turnovec M, van Gijn ME, Vasilevsky NA, Vlčková M, Walden A, Wang K, Wapner R, Ware JS, Wiafe AA, Wiafe SA, Wiggins LD, Williams AE, Wu C, Wyrwoll MJ, Xiong H, Yalin N, Yamamoto Y, Yatham LN, Yocum AK, Young AH, Yüksel Z, Zandi PP, Zankl A, Zarante I, Zvolský M, Toro S, Carmody LC, Harris NL, Munoz-Torres MC, Danis D, Mungall CJ, Köhler S, Haendel MA, Robinson PN Nucleic acids research 37953324 Nucleic Acids Res 2024 Jan 5 https://www.ncbi.nlm.nih.gov/pubmed/37953324
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Köhler S, Carmody L, Vasilevsky N, Jacobsen JOB, Danis D, Gourdine JP, Gargano M, Harris NL, Matentzoglu N, McMurry JA, Osumi-Sutherland D, Cipriani V, Balhoff JP, Conlin T, Blau H, Baynam G, Palmer R, Gratian D, Dawkins H, Segal M, Jansen AC, Muaz A, Chang WH, Bergerson J, Laulederkind SJF, Yüksel Z, Beltran S, Freeman AF, Sergouniotis PI, Durkin D, Storm AL, Hanauer M, Brudno M, Bello SM, Sincan M, Rageth K, Wheeler MT, Oegema R, Lourghi H, Della Rocca MG, Thompson R, Castellanos F, Priest J, Cunningham-Rundles C, Hegde A, Lovering RC, Hajek C, Olry A, Notarangelo L, Similuk M, Zhang XA, Gómez-Andrés D, Lochmüller H, Dollfus H, Rosenzweig S, Marwaha S, Rath A, Sullivan K, Smith C, Milner JD, Leroux D, Boerkoel CF, Klion A, Carter MC, Groza T, Smedley D, Haendel MA, Mungall C, Robinson PN Nucleic acids research 30476213 Nucleic Acids Res 2019 Jan 8 https://www.ncbi.nlm.nih.gov/pubmed/30476213
Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics. Köhler S, Øien NC, Buske OJ, Groza T, Jacobsen JOB, McNamara C, Vasilevsky N, Carmody LC, Gourdine JP, Gargano M, McMurry JA, Danis D, Mungall CJ, Smedley D, Haendel M, Robinson PN Current protocols in human genetics 31479590 Curr Protoc Hum Genet 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/31479590
Are minor alleles more likely to be risk alleles? Kido T, Sikora-Wohlfeld W, Kawashima M, Kikuchi S, Kamatani N, Patwardhan A, Chen R, Sirota M, Kodama K, Hadley D, Butte AJ BMC medical genomics 29351777 BMC Med Genomics 2018 Jan 19 https://www.ncbi.nlm.nih.gov/pubmed/29351777
Development and Validation of an Electronic Health Record-Based Machine Learning Model to Estimate Delirium Risk in Newly Hospitalized Patients Without Known Cognitive Impairment. Wong A, Young AT, Liang AS, Gonzales R, Douglas VC, Hadley D JAMA network open 30646095 JAMA Netw Open 2018 Aug 3 https://www.ncbi.nlm.nih.gov/pubmed/30646095
The Impact of COVID-19 on African American Communities in the United States. Cyrus E, Clarke R, Hadley D, Bursac Z, Trepka MJ, Dévieux JG, Bagci U, Furr-Holden D, Coudray M, Mariano Y, Kiplagat S, Noel I, Ravelo G, Paley M, Wagner EF Health equity 33269331 Health Equity 2020 https://www.ncbi.nlm.nih.gov/pubmed/33269331
An Ontology for Cardiothoracic Surgical Education and Clinical Data Analytics. Panahiazar M, Chern Y, Riojas R, Latif OS, Lokala U, Hadley D, Sheth A, Beygui RE Studies in health technology and informatics 35612107 Stud Health Technol Inform 2022 May 25 https://www.ncbi.nlm.nih.gov/pubmed/35612107
A review investigating the relationship between cannabis use and adolescent cognitive functioning. Cyrus E, Coudray MS, Kiplagat S, Mariano Y, Noel I, Galea JT, Hadley D, Dévieux JG, Wagner E Current opinion in psychology 32818908 Curr Opin Psychol 2021 Apr https://www.ncbi.nlm.nih.gov/pubmed/32818908
A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth. Rappoport N, Toung J, Hadley D, Wong RJ, Fujioka K, Reuter J, Abbott CW, Oh S, Hu D, Eng C, Huntsman S, Bodian DL, Niederhuber JE, Hong X, Zhang G, Sikora-Wohfeld W, Gignoux CR, Wang H, Oehlert J, Jelliffe-Pawlowski LL, Gould JB, Darmstadt GL, Wang X, Bustamante CD, Snyder MP, Ziv E, Patsopoulos NA, Muglia LJ, Burchard E, Shaw GM, O'Brodovich HM, Stevenson DK, Butte AJ, Sirota M Scientific reports 29317701 Sci Rep 2018 Jan 9 https://www.ncbi.nlm.nih.gov/pubmed/29317701
Precision Diagnosis Of Melanoma And Other Skin Lesions From Digital Images. Bhattacharya A, Young A, Wong A, Stalling S, Wei M, Hadley D AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 28815132 AMIA Jt Summits Transl Sci Proc 2017 https://www.ncbi.nlm.nih.gov/pubmed/28815132
Rare copy number variants in over 100,000 European ancestry subjects reveal multiple disease associations. Li YR, Glessner JT, Coe BP, Li J, Mohebnasab M, Chang X, Connolly J, Kao C, Wei Z, Bradfield J, Kim C, Hou C, Khan M, Mentch F, Qiu H, Bakay M, Cardinale C, Lemma M, Abrams D, Bridglall-Jhingoor A, Behr M, Harrison S, Otieno G, Thomas A, Wang F, Chiavacci R, Wu L, Hadley D, Goldmuntz E, Elia J, Maris J, Grundmeier R, Devoto M, Keating B, March M, Pellagrino R, Grant SFA, Sleiman PMA, Li M, Eichler EE, Hakonarson H Nature communications 31937769 Nat Commun 2020 Jan 14 https://www.ncbi.nlm.nih.gov/pubmed/31937769
Data Analytics of Electronic Health Records to Enhance Care of Coronary Artery Disease in Younger Women with Avoiding Possible Delay in Treatment. Panahiazar M, Bishara AM, Chern Y, Alizadehsani R, Latif OS, Hadley D, Beygui RE Studies in health technology and informatics 35673215 Stud Health Technol Inform 2022 Jun 6 https://www.ncbi.nlm.nih.gov/pubmed/35673215
Data Analytics of Electronic Medical Record to Study Racial Diversities in Cardiovascular Diagnosis and Treatment. Panahiazar M, Chern Y, Riojas R, Latif OS, Hadley D, Beygui RE Studies in health technology and informatics 35612140 Stud Health Technol Inform 2022 May 25 https://www.ncbi.nlm.nih.gov/pubmed/35612140
Opal: an implementation science tool for machine learning clinical decision support in anesthesia. Bishara A, Wong A, Wang L, Chopra M, Fan W, Lin A, Fong N, Palacharla A, Spinner J, Armstrong R, Pletcher MJ, Lituiev D, Hadley D, Butte A Journal of clinical monitoring and computing 34837585 J Clin Monit Comput 2022 Oct https://www.ncbi.nlm.nih.gov/pubmed/34837585
Machine Learning Prediction of Liver Allograft Utilization From Deceased Organ Donors Using the National Donor Management Goals Registry. Bishara AM, Lituiev DS, Adelmann D, Kothari RP, Malinoski DJ, Nudel JD, Sally MB, Hirose R, Hadley DD, Niemann CU Transplantation direct 34604507 Transplant Direct 2021 Oct https://www.ncbi.nlm.nih.gov/pubmed/34604507
The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia: design, results and future prospects. Middeldorp CM, Felix JF, Mahajan A, EArly Genetics Lifecourse Epidemiology (EAGLE) consortium, Early Growth Genetics (EGG) consortium, McCarthy MI European journal of epidemiology 30887376 Eur J Epidemiol 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/30887376
Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia. Paik H, Kan MJ, Rappoport N, Hadley D, Sirota M, Chen B, Manber U, Cho SB, Butte AJ Scientific data 31615985 Sci Data 2019 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/31615985
Predictive Models for Length of Stay and Discharge Disposition in Elective Spine Surgery: Development, Validation, and Comparison to the ACS NSQIP Risk Calculator. Arora A, Lituiev D, Jain D, Hadley D, Butte AJ, Berven S, Peterson TA Spine 36398784 Spine (Phila Pa 1976) 2023 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/36398784
Wearable microPosters. Lee J, Sternberg P microPublication biology 32550402 MicroPubl Biol 2019 Nov 26 https://www.ncbi.nlm.nih.gov/pubmed/32550402
Micropublication: incentivizing community curation and placing unpublished data into the public domain. Raciti D, Yook K, Harris TW, Schedl T, Sternberg PW Database : the journal of biological databases and curation 29688367 Database (Oxford) 2018 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/29688367
WormBase 2017: molting into a new stage. Lee RYN, Howe KL, Harris TW, Arnaboldi V, Cain S, Chan J, Chen WJ, Davis P, Gao S, Grove C, Kishore R, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Rodgers F, Russell M, Schindelman G, Tuli MA, Van Auken K, Wang Q, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW Nucleic acids research 29069413 Nucleic Acids Res 2018 Jan 4 https://www.ncbi.nlm.nih.gov/pubmed/29069413
Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. Grove C, Cain S, Chen WJ, Davis P, Harris T, Howe KL, Kishore R, Lee R, Paulini M, Raciti D, Tuli MA, Van Auken K, Williams G, WormBase Consortium Methods in molecular biology (Clifton, N.J.) 29761466 Methods Mol Biol 2018 https://www.ncbi.nlm.nih.gov/pubmed/29761466
How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM). Küçük McGinty H, Visser U, Schürer S Methods in molecular biology (Clifton, N.J.) 30848456 Methods Mol Biol 2019 https://www.ncbi.nlm.nih.gov/pubmed/30848456
Machine and deep learning approaches for cancer drug repurposing. Issa NT, Stathias V, Schürer S, Dakshanamurthy S Seminars in cancer biology 31904426 Semin Cancer Biol 2021 Jan https://www.ncbi.nlm.nih.gov/pubmed/31904426
Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures. Cooper DJ, Schürer S Molecules (Basel, Switzerland) 31018579 Molecules 2019 Apr 23 https://www.ncbi.nlm.nih.gov/pubmed/31018579
Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data. Vidović D, Shamsaei B, Schürer SC, Kogan P, Chojnacki S, Kouril M, Medvedovic M, Niu W, Azeloglu EU, Birtwistle MR, Chen Y, Chen T, Hansen J, Hu B, Iyengar R, Jayaraman G, Li H, Liu T, Sobie EA, Xiong Y, Berberich MJ, Bradshaw G, Chung M, Everley RA, Gaudio B, Hafner M, Kalocsay M, Mills CE, Nariya MK, Sorger PK, Subramanian K, Victor C, Banuelos M, Dardov V, Holewinski R, Manalo DM, Mandefro B, Matlock AD, Ornelas L, Sareen D, Svendsen CN, Vaibhav V, Van Eyk JE, Venkatraman V, Finkbiener S, Fraenkel E, Rothstein J, Thompson L, Asiedu J, Carr SA, Christianson KE, Davison D, Dele-Oni DO, DeRuff KC, Egri SB, Jacome ASV, Jaffe JD, Lam D, Litichevskiy L, Lu X, Mullahoo J, Officer A, Papanastasiou M, Peckner R, Toder C, Blanchard J, Bula M, Ko T, Tsai LH, Young JZ, Sharma V, Pillai A, Meller J, MacCoss MJ Molecular & cellular proteomics : MCP 40089066 Mol Cell Proteomics 2025 Jul https://www.ncbi.nlm.nih.gov/pubmed/40089066
The Clinical Kinase Index: A Method to Prioritize Understudied Kinases as Drug Targets for the Treatment of Cancer. Essegian D, Khurana R, Stathias V, Schürer SC Cell reports. Medicine 33205077 Cell Rep Med 2020 Oct 20 https://www.ncbi.nlm.nih.gov/pubmed/33205077
Kinome-Wide Virtual Screening by Multi-Task Deep Learning. Hu J, Allen BK, Stathias V, Ayad NG, Schürer SC International journal of molecular sciences 38473785 Int J Mol Sci 2024 Feb 22 https://www.ncbi.nlm.nih.gov/pubmed/38473785
Best practices for managing and disseminating resources and outreach and evaluating the impact of the IDG Consortium. Vidović D, Waller A, Holmes J, Sklar LA, Schürer SC Drug discovery today 38508231 Drug Discov Today 2024 May https://www.ncbi.nlm.nih.gov/pubmed/38508231
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Stathias V, Turner J, Koleti A, Vidovic D, Cooper D, Fazel-Najafabadi M, Pilarczyk M, Terryn R, Chung C, Umeano A, Clarke DJB, Lachmann A, Evangelista JE, Ma'ayan A, Medvedovic M, Schürer SC Nucleic acids research 31701147 Nucleic Acids Res 2020 Jan 8 https://www.ncbi.nlm.nih.gov/pubmed/31701147
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. He Y, Duncan WD, Cooper DJ, Hansen J, Iyengar R, Ong E, Walker K, Tibi O, Smith S, Serra LM, Zheng J, Sarntivijai S, Schürer S, O'Shea KS, Diehl AD BMC bioinformatics 31272389 BMC Bioinformatics 2019 Apr 25 https://www.ncbi.nlm.nih.gov/pubmed/31272389
Benchmarking the Builders: A Comparative Analysis of PRosettaC and AlphaFold3 for Predicting PROTAC Ternary Complexes. Schulz JM, Schürer SI, Reynolds RC, Schürer SC Research square 40630526 Res Sq 2025 Jul 2 https://www.ncbi.nlm.nih.gov/pubmed/40630526
AI-Assisted chemical probe discovery for the understudied Calcium-Calmodulin Dependent Kinase, PNCK. Essegian DJ, Chavez V, Khurshid R, Merchan JR, Schürer SC PLoS computational biology 37235579 PLoS Comput Biol 2023 May https://www.ncbi.nlm.nih.gov/pubmed/37235579
An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows. Penn S, Lomax J, Karlsson A, Antonucci V, Zachmann CD, Kanza S, Schurer S, Turner J Journal of biomedical semantics 37568227 J Biomed Semantics 2023 Aug 11 https://www.ncbi.nlm.nih.gov/pubmed/37568227
Cellular and molecular effects of PNCK, a non-canonical kinase target in renal cell carcinoma. Essegian DJ, Chavez V, Bustamante F, Schürer SC, Merchan JR iScience 36465101 iScience 2022 Dec 22 https://www.ncbi.nlm.nih.gov/pubmed/36465101
Targeted degrader technologies as prospective SARS-CoV-2 therapies. Khurshid R, Schulz JM, Hu J, Snowden TS, Reynolds RC, Schürer SC Drug discovery today 38029836 Drug Discov Today 2024 Jan https://www.ncbi.nlm.nih.gov/pubmed/38029836
Corrigendum to "Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data". Vidović D, Shamsaei B, Schürer SC, Kogan P, Chojnacki S, Kouril M, Medvedovic M, Niu W, Azeloglu EU, Birtwistle MR, Chen Y, Chen T, Hansen J, Hu B, Iyengar R, Jayaraman G, Li H, Liu T, Sobie EA, Xiong Y, Berberich MJ, Bradshaw G, Chung M, Everley RA, Gaudio B, Hafner M, Kalocsay M, Mills CE, Nariya MK, Sorger PK, Subramanian K, Victor C, Banuelos M, Dardov V, Holewinski R, Manalo DM, Mandefro B, Matlock AD, Ornelas L, Sareen D, Svendsen CN, Vaibhav V, Van Eyk JE, Venkatraman V, Finkbiener S, Fraenkel E, Rothstein J, Thompson L, Asiedu J, Carr SA, Christianson KE, Davison D, Dele-Oni DO, DeRuff KC, Egri SB, Vaca Jacome AS, Jaffe JD, Lam D, Litichevskiy L, Lu X, Mullahoo J, Officer A, Papanastasiou M, Peckner R, Toder C, Blanchard J, Bula M, Ko T, Tsai LH, Young JZ, Sharma V, Meller J, MacCoss MJ Molecular & cellular proteomics : MCP 40783300 Mol Cell Proteomics 2025 Jul https://www.ncbi.nlm.nih.gov/pubmed/40783300
PRosettaC outperforms AlphaFold3 for modeling PROTAC ternary complexes. Schulz JM, Schürer SI, Reynolds RC, Schürer SC Scientific reports 41152377 Sci Rep 2025 Oct 28 https://www.ncbi.nlm.nih.gov/pubmed/41152377
Advancing the bioassay ontology through integrated PK/PD and safety pharmacology representation. Glenny-Pescov J, Chung C, Ross N, Hu J, Sinclair M, Khurshid R, Karlsson A, Schürer SC Journal of biomedical semantics 41821121 J Biomed Semantics 2026 Mar 12 https://www.ncbi.nlm.nih.gov/pubmed/41821121
A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards: From Sequencer to Electronic Health Record. Campbell WS, Carter AB, Cushman-Vokoun AM, Greiner TC, Dash RC, Routbort M, de Baca ME, Campbell JR The Journal of molecular diagnostics : JMD 30797065 J Mol Diagn 2019 May https://www.ncbi.nlm.nih.gov/pubmed/30797065
An Extended SNOMED CT Concept Model for Observations in Molecular Genetics. Campbell JR, Talmon G, Cushman-Vokoun A, Karlsson D, Scott Campbell W AMIA ... Annual Symposium proceedings. AMIA Symposium 28269830 AMIA Annu Symp Proc 2016 https://www.ncbi.nlm.nih.gov/pubmed/28269830
Exploration of PCORnet Data Resources for Assessing Use of Molecular-Guided Cancer Treatment. Carnahan RM, Waitman LR, Charlton ME, Schroeder MC, Bossler AD, Campbell WS, Campbell JR, McDowell BD, Smith NC, Gryzlak BM, Chrischilles EA JCO clinical cancer informatics 32795185 JCO Clin Cancer Inform 2020 Aug https://www.ncbi.nlm.nih.gov/pubmed/32795185
A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC. Campbell WS, Karlsson D, Vreeman DJ, Lazenby AJ, Talmon GA, Campbell JR Journal of the American Medical Informatics Association : JAMIA 29024958 J Am Med Inform Assoc 2018 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/29024958
Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. Amith M, Manion FJ, Harris MR, Zhang Y, Xu H, Tao C Studies in health technology and informatics 29295217 Stud Health Technol Inform 2017 https://www.ncbi.nlm.nih.gov/pubmed/29295217
Architecture and usability of OntoKeeper, an ontology evaluation tool. Amith M, Manion F, Liang C, Harris M, Wang D, He Y, Tao C BMC medical informatics and decision making 31391056 BMC Med Inform Decis Mak 2019 Aug 8 https://www.ncbi.nlm.nih.gov/pubmed/31391056
Regulations and Norms for Reuse of Residual Clinical Biospecimens and Health Data. Umberfield EE, Kardia SLR, Jiang Y, Thomer AK, Harris MR Western journal of nursing research 34238076 West J Nurs Res 2022 Nov https://www.ncbi.nlm.nih.gov/pubmed/34238076
Evaluating and Extending the Informed Consent Ontology for Representing Permissions from the Clinical Domain. Umberfield EE, Stansbury C, Ford K, Jiang Y, Kardia SLR, Thomer AK, Harris MR Applied ontology 36312514 Appl Ontol 2022 https://www.ncbi.nlm.nih.gov/pubmed/36312514
Integrating a conceptual consent permission model from the informed consent ontology for software application execution. Amith MT, He Y, Smith E, Harris M, Manion F, Tao C AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 40502263 AMIA Jt Summits Transl Sci Proc 2025 https://www.ncbi.nlm.nih.gov/pubmed/40502263
Lessons Learned for Identifying and Annotating Permissions in Clinical Consent Forms. Umberfield EE, Jiang Y, Fenton SH, Stansbury C, Ford K, Crist K, Kardia SLR, Thomer AK, Harris MR Applied clinical informatics 34161986 Appl Clin Inform 2021 May https://www.ncbi.nlm.nih.gov/pubmed/34161986
Machine learning-based donor permission extraction from informed consent documents. Zhang M, Sankaranarayanapillai M, Du J, Xiang Y, Manion FJ, Harris MR, Stansbury C, Pham HA, Tao C BMC bioinformatics 38102593 BMC Bioinformatics 2023 Dec 15 https://www.ncbi.nlm.nih.gov/pubmed/38102593
Assessing the practice of biomedical ontology evaluation: Gaps and opportunities. Amith M, He Z, Bian J, Lossio-Ventura JA, Tao C Journal of biomedical informatics 29462669 J Biomed Inform 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/29462669
Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD. Chen G, Jia Y, Zhu L, Li P, Zhang L, Tao C, Jim Zheng W BMC medical informatics and decision making 30700303 BMC Med Inform Decis Mak 2019 Jan 31 https://www.ncbi.nlm.nih.gov/pubmed/30700303
Expressing and Executing Informed Consent Permissions Using SWRL: The All of Us Use Case. Amith M, Harris MR, Stansbury C, Ford K, Manion FJ, Tao C AMIA ... Annual Symposium proceedings. AMIA Symposium 35309008 AMIA Annu Symp Proc 2021 https://www.ncbi.nlm.nih.gov/pubmed/35309008
The Human Phenotype Ontology in 2017. Köhler S, Vasilevsky NA, Engelstad M, Foster E, McMurry J, Aymé S, Baynam G, Bello SM, Boerkoel CF, Boycott KM, Brudno M, Buske OJ, Chinnery PF, Cipriani V, Connell LE, Dawkins HJ, DeMare LE, Devereau AD, de Vries BB, Firth HV, Freson K, Greene D, Hamosh A, Helbig I, Hum C, Jähn JA, James R, Krause R, F Laulederkind SJ, Lochmüller H, Lyon GJ, Ogishima S, Olry A, Ouwehand WH, Pontikos N, Rath A, Schaefer F, Scott RH, Segal M, Sergouniotis PI, Sever R, Smith CL, Straub V, Thompson R, Turner C, Turro E, Veltman MW, Vulliamy T, Yu J, von Ziegenweidt J, Zankl A, Züchner S, Zemojtel T, Jacobsen JO, Groza T, Smedley D, Mungall CJ, Haendel M, Robinson PN Nucleic acids research 27899602 Nucleic Acids Res 2017 Jan 4 https://www.ncbi.nlm.nih.gov/pubmed/27899602
MIRO: guidelines for minimum information for the reporting of an ontology. Matentzoglu N, Malone J, Mungall C, Stevens R Journal of biomedical semantics 29347969 J Biomed Semantics 2018 Jan 18 https://www.ncbi.nlm.nih.gov/pubmed/29347969
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Lizio M, Harshbarger J, Abugessaisa I, Noguchi S, Kondo A, Severin J, Mungall C, Arenillas D, Mathelier A, Medvedeva YA, Lennartsson A, Drabløs F, Ramilowski JA, Rackham O, Gough J, Andersson R, Sandelin A, Ienasescu H, Ono H, Bono H, Hayashizaki Y, Carninci P, Forrest AR, Kasukawa T, Kawaji H Nucleic acids research 27794045 Nucleic Acids Res 2017 Jan 4 https://www.ncbi.nlm.nih.gov/pubmed/27794045
A Logical Model of Homology for Comparative Biology. Mabee PM, Balhoff JP, Dahdul WM, Lapp H, Mungall CJ, Vision TJ Systematic biology 31596473 Syst Biol 2020 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/31596473
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Matentzoglu N, Goutte-Gattat D, Tan SZK, Balhoff JP, Carbon S, Caron AR, Duncan WD, Flack JE, Haendel M, Harris NL, Hogan WR, Hoyt CT, Jackson RC, Kim H, Kir H, Larralde M, McMurry JA, Overton JA, Peters B, Pilgrim C, Stefancsik R, Robb SM, Toro S, Vasilevsky NA, Walls R, Mungall CJ, Osumi-Sutherland D Database : the journal of biological databases and curation 36208225 Database (Oxford) 2022 Oct 8 https://www.ncbi.nlm.nih.gov/pubmed/36208225
BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies. Vendetti J, Harris NL, Dorf MV, Skrenchuk A, Caufield JH, Gonçalves RS, Graybeal JB, Hegde H, Redmond T, Mungall CJ, Musen MA Nucleic acids research 40357648 Nucleic Acids Res 2025 Jul 7 https://www.ncbi.nlm.nih.gov/pubmed/40357648
Dead simple OWL design patterns. Osumi-Sutherland D, Courtot M, Balhoff JP, Mungall C Journal of biomedical semantics 28583177 J Biomed Semantics 2017 Jun 5 https://www.ncbi.nlm.nih.gov/pubmed/28583177
Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience. Links AE, Draper D, Lee E, Guzman J, Valivullah Z, Maduro V, Lebedev V, Didenko M, Tomlin G, Brudno M, Girdea M, Dumitriu S, Haendel MA, Mungall CJ, Smedley D, Hochheiser H, Arnold AM, Coessens B, Verhoeven S, Bone W, Adams D, Boerkoel CF, Gahl WA, Sincan M Frontiers in medicine 27785453 Front Med (Lausanne) 2016 https://www.ncbi.nlm.nih.gov/pubmed/27785453
ROBOT: A Tool for Automating Ontology Workflows. Jackson RC, Balhoff JP, Douglass E, Harris NL, Mungall CJ, Overton JA BMC bioinformatics 31357927 BMC Bioinformatics 2019 Jul 29 https://www.ncbi.nlm.nih.gov/pubmed/31357927
Uniform resolution of compact identifiers for biomedical data. Wimalaratne SM, Juty N, Kunze J, Janée G, McMurry JA, Beard N, Jimenez R, Grethe JS, Hermjakob H, Martone ME, Clark T Scientific data 29737976 Sci Data 2018 May 8 https://www.ncbi.nlm.nih.gov/pubmed/29737976
A data citation roadmap for scholarly data repositories. Fenner M, Crosas M, Grethe JS, Kennedy D, Hermjakob H, Rocca-Serra P, Durand G, Berjon R, Karcher S, Martone M, Clark T Scientific data 30971690 Sci Data 2019 Apr 10 https://www.ncbi.nlm.nih.gov/pubmed/30971690
FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics. Levinson MA, Niestroy J, Al Manir S, Fairchild K, Lake DE, Moorman JR, Clark T Neuroinformatics 34264488 Neuroinformatics 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/34264488
Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data. Hong N, Wen A, Shen F, Sohn S, Liu S, Liu H, Jiang G AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 29888045 AMIA Jt Summits Transl Sci Proc 2018 https://www.ncbi.nlm.nih.gov/pubmed/29888045
ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model. Yu Y, Ruddy KJ, Hong N, Tsuji S, Wen A, Shah ND, Jiang G Journal of biomedical informatics 30738946 J Biomed Inform 2019 Mar https://www.ncbi.nlm.nih.gov/pubmed/30738946
Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP. Hong N, Wen A, Mojarad MR, Sohn S, Liu H, Jiang G AMIA ... Annual Symposium proceedings. AMIA Symposium 30815098 AMIA Annu Symp Proc 2018 https://www.ncbi.nlm.nih.gov/pubmed/30815098
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. Adekkanattu P, Jiang G, Luo Y, Kingsbury PR, Xu Z, Rasmussen LV, Pacheco JA, Kiefer RC, Stone DJ, Brandt PS, Yao L, Zhong Y, Deng Y, Wang F, Ancker JS, Campion TR, Pathak J AMIA ... Annual Symposium proceedings. AMIA Symposium 32308812 AMIA Annu Symp Proc 2019 https://www.ncbi.nlm.nih.gov/pubmed/32308812
Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study. Yu Y, Ruddy K, Mansfield A, Zong N, Wen A, Tsuji S, Huang M, Liu H, Shah N, Jiang G JMIR medical informatics 32530430 JMIR Med Inform 2020 Jun 12 https://www.ncbi.nlm.nih.gov/pubmed/32530430
Building Interoperable FHIR-Based Vocabulary Mapping Services: A Case Study of OHDSI Vocabularies and Mappings. Jiang G, Kiefer R, Prud'hommeaux E, Solbrig HR Studies in health technology and informatics 29295408 Stud Health Technol Inform 2017 https://www.ncbi.nlm.nih.gov/pubmed/29295408
Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications. Hong N, Prodduturi N, Wang C, Jiang G Studies in health technology and informatics 29295223 Stud Health Technol Inform 2017 https://www.ncbi.nlm.nih.gov/pubmed/29295223
Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma. Hong N, Zhang N, Wu H, Lu S, Yu Y, Hou L, Lu Y, Liu H, Jiang G BMC medical informatics and decision making 30526572 BMC Med Inform Decis Mak 2018 Dec 7 https://www.ncbi.nlm.nih.gov/pubmed/30526572
An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling. Hong N, Wang K, Wu S, Shen F, Yao L, Jiang G Journal of healthcare informatics research 31598581 J Healthc Inform Res 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/31598581
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. Hong N, Wen A, Stone DJ, Tsuji S, Kingsbury PR, Rasmussen LV, Pacheco JA, Adekkanattu P, Wang F, Luo Y, Pathak J, Liu H, Jiang G Journal of biomedical informatics 31622801 J Biomed Inform 2019 Nov https://www.ncbi.nlm.nih.gov/pubmed/31622801
Integration of NLP2FHIR Representation with Deep Learning Models for EHR Phenotyping: A Pilot Study on Obesity Datasets. Liu S, Luo Y, Stone D, Zong N, Wen A, Yu Y, Rasmussen LV, Wang F, Pathak J, Liu H, Jiang G AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 34457156 AMIA Jt Summits Transl Sci Proc 2021 https://www.ncbi.nlm.nih.gov/pubmed/34457156
Mining Hierarchies and Similarity Clusters from Value Set Repositories. Peterson KJ, Jiang G, Brue SM, Shen F, Liu H AMIA ... Annual Symposium proceedings. AMIA Symposium 29854206 AMIA Annu Symp Proc 2017 https://www.ncbi.nlm.nih.gov/pubmed/29854206
Developing a FHIR-based Framework for Phenome Wide Association Studies: A Case Study with A Pan-Cancer Cohort. Zong N, Sharma DK, Yu Y, Egan JB, Davila JI, Wang C, Jiang G AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 32477698 AMIA Jt Summits Transl Sci Proc 2020 https://www.ncbi.nlm.nih.gov/pubmed/32477698
Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data. Hong N, Wen A, Shen F, Sohn S, Wang C, Liu H, Jiang G JAMIA open 32025655 JAMIA Open 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/32025655
Leveraging Genetic Reports and Electronic Health Records for the Prediction of Primary Cancers: Algorithm Development and Validation Study. Zong N, Ngo V, Stone DJ, Wen A, Zhao Y, Yu Y, Liu S, Huang M, Wang C, Jiang G JMIR medical informatics 34032581 JMIR Med Inform 2021 May 25 https://www.ncbi.nlm.nih.gov/pubmed/34032581
Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx). Solbrig HR, Prud'hommeaux E, Grieve G, McKenzie L, Mandel JC, Sharma DK, Jiang G Journal of biomedical informatics 28213144 J Biomed Inform 2017 Mar https://www.ncbi.nlm.nih.gov/pubmed/28213144
D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization. Sharma DK, Solbrig HR, Prud'hommeaux E, Lee K, Pathak J, Jiang G AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 28815140 AMIA Jt Summits Transl Sci Proc 2017 https://www.ncbi.nlm.nih.gov/pubmed/28815140
A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR. Jiang G, Kiefer RC, Sharma DK, Prud'hommeaux E, Solbrig HR Studies in health technology and informatics 29295227 Stud Health Technol Inform 2017 https://www.ncbi.nlm.nih.gov/pubmed/29295227
Automated Population of an i2b2 Clinical Data Warehouse using FHIR. Solbrig HR, Hong N, Murphy SN, Jiang G AMIA ... Annual Symposium proceedings. AMIA Symposium 30815141 AMIA Annu Symp Proc 2018 https://www.ncbi.nlm.nih.gov/pubmed/30815141
Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records. Zong N, Wen A, Stone DJ, Sharma DK, Wang C, Yu Y, Liu H, Shi Q, Jiang G JCO clinical cancer informatics 32134686 JCO Clin Cancer Inform 2020 Mar https://www.ncbi.nlm.nih.gov/pubmed/32134686
Integrating Electronic Health Record Data into the ADEpedia-on-OHDSI Platform for Improved Signal Detection: A Case Study of Immune-related Adverse Events. Yu Y, Ruddy KJ, Wen A, Zong N, Tsuji S, Chen J, Shah ND, Jiang G AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 32477694 AMIA Jt Summits Transl Sci Proc 2020 https://www.ncbi.nlm.nih.gov/pubmed/32477694
CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping. Wen A, Rasmussen LV, Stone D, Liu S, Kiefer R, Adekkanattu P, Brandt PS, Pacheco JA, Luo Y, Wang F, Pathak J, Liu H, Jiang G AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 34457178 AMIA Jt Summits Transl Sci Proc 2021 https://www.ncbi.nlm.nih.gov/pubmed/34457178
Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data. Zong N, Stone DJ, Sharma DK, Wen A, Wang C, Yu Y, Huang M, Liu S, Liu H, Shi Q, Jiang G International journal of medical informatics 33160272 Int J Med Inform 2021 Jan https://www.ncbi.nlm.nih.gov/pubmed/33160272
Exploring JSON-LD as an Executable Definition of FHIR RDF to Enable. Solbrig HR, Solbrig HR, Prud'hommeaux E, Booth D, Endle CM, Stone DJ, Jiang G AMIA ... Annual Symposium proceedings. AMIA Symposium 33936490 AMIA Annu Symp Proc 2020 https://www.ncbi.nlm.nih.gov/pubmed/33936490
When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data. Gürsoy G, Harmanci A, Tang H, Ayday E, Brenner SE Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 30864339 Pac Symp Biocomput 2019 https://www.ncbi.nlm.nih.gov/pubmed/30864339
Using Ethereum blockchain to store and query pharmacogenomics data via smart contracts. Gürsoy G, Brannon CM, Gerstein M BMC medical genomics 32487214 BMC Med Genomics 2020 Jun 1 https://www.ncbi.nlm.nih.gov/pubmed/32487214
Using blockchain to log genome dataset access: efficient storage and query. Gürsoy G, Bjornson R, Green ME, Gerstein M BMC medical genomics 32693796 BMC Med Genomics 2020 Jul 21 https://www.ncbi.nlm.nih.gov/pubmed/32693796
Structuring supplemental materials in support of reproducibility. Greenbaum D, Rozowsky J, Stodden V, Gerstein M Genome biology 28381262 Genome Biol 2017 Apr 5 https://www.ncbi.nlm.nih.gov/pubmed/28381262
Quantification of private information leakage from phenotype-genotype data: linking attacks. Harmanci A, Gerstein M Nature methods 26828419 Nat Methods 2016 Mar https://www.ncbi.nlm.nih.gov/pubmed/26828419
Navigating ethical quandaries with the privacy dilemma of biomedical datasets. Gürsoy G, Doerr M, Wilbanks J, Wagner JK, Tang H, Brenner SE Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 31797643 Pac Symp Biocomput 2020 https://www.ncbi.nlm.nih.gov/pubmed/31797643
Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation. Kim M, Song Y, Wang S, Xia Y, Jiang X JMIR medical informatics 29666041 JMIR Med Inform 2018 Apr 17 https://www.ncbi.nlm.nih.gov/pubmed/29666041
Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. Chen F, Jiang X, Wang S, Schilling LM, Meeker D, Ong T, Matheny ME, Doctor JN, Ohno-Machado L, Vaidya J IEEE internet computing 29867290 IEEE Internet Comput 2018 Mar-Apr https://www.ncbi.nlm.nih.gov/pubmed/29867290
Linking temporal medical records using non-protected health information data. Bonomi L, Jiang X Statistical methods in medical research 29298592 Stat Methods Med Res 2018 Nov https://www.ncbi.nlm.nih.gov/pubmed/29298592
Logistic regression model training based on the approximate homomorphic encryption. Kim A, Song Y, Kim M, Lee K, Cheon JH BMC medical genomics 30309349 BMC Med Genomics 2018 Oct 11 https://www.ncbi.nlm.nih.gov/pubmed/30309349
A Full RNS Variant of Approximate Homomorphic Encryption. Cheon JH, Han K, Kim A, Kim M, Song Y Selected areas in cryptography : ... annual international workshop, SAC ... proceedings. SAC (Conference) 33870337 Sel Areas Cryptogr 2018 https://www.ncbi.nlm.nih.gov/pubmed/33870337
Privacy-preserving techniques of genomic data-a survey. Aziz MMA, Sadat MN, Alhadidi D, Wang S, Jiang X, Brown CL, Mohammed N Briefings in bioinformatics 29121240 Brief Bioinform 2019 May 21 https://www.ncbi.nlm.nih.gov/pubmed/29121240
A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. Zhao Y, Wang X, Tang H Journal of computational biology : a journal of computational molecular cell biology 29741956 J Comput Biol 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/29741956
Privacy-Preserving Predictive Modeling: Harmonization of Contextual Embeddings From Different Sources. Huang Y, Lee J, Wang S, Sun J, Liu H, Jiang X JMIR medical informatics 29769172 JMIR Med Inform 2018 May 16 https://www.ncbi.nlm.nih.gov/pubmed/29769172
A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. Vaidya J, Shafiq B, Asani M, Adam N, Jiang X, Ohno-Machado L AMIA ... Annual Symposium proceedings. AMIA Symposium 29854240 AMIA Annu Symp Proc 2017 https://www.ncbi.nlm.nih.gov/pubmed/29854240
SCOTCH: Secure Counting Of encrypTed genomiC data using a Hybrid approach. Chenghong W, Jiang Y, Mohammed N, Chen F, Jiang X, Al Aziz MM, Sadat MN, Wang S AMIA ... Annual Symposium proceedings. AMIA Symposium 29854245 AMIA Annu Symp Proc 2017 https://www.ncbi.nlm.nih.gov/pubmed/29854245
Selecting Optimal Subset to release under Differentially Private M-estimators from Hybrid Datasets. Wang M, Ji Z, Kim HE, Wang S, Xiong L, Jiang X IEEE transactions on knowledge and data engineering 30034201 IEEE Trans Knowl Data Eng 2018 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/30034201
Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. Wang W, Chen G, Pan X, Zhang Y, Wang X, Bindschaedler V, Tang H, Gunter CA Conference on Computer and Communications Security : proceedings of the ... conference on computer and communications security. ACM Conference on Computer and Communications Security 30853868 Conf Comput Commun Secur 2017 Oct-Nov https://www.ncbi.nlm.nih.gov/pubmed/30853868
Privacy-preserving construction of generalized linear mixed model for biomedical computation. Zhu R, Jiang C, Wang X, Wang S, Zheng H, Tang H Bioinformatics (Oxford, England) 32657380 Bioinformatics 2020 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/32657380
EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning. Kuo TT, Gabriel RA, Cidambi KR, Ohno-Machado L Journal of the American Medical Informatics Association : JAMIA 32364235 J Am Med Inform Assoc 2020 May 1 https://www.ncbi.nlm.nih.gov/pubmed/32364235
A privacy-preserving distributed filtering framework for NLP artifacts. Sadat MN, Aziz MMA, Mohammed N, Pakhomov S, Liu H, Jiang X BMC medical informatics and decision making 31493797 BMC Med Inform Decis Mak 2019 Sep 7 https://www.ncbi.nlm.nih.gov/pubmed/31493797
PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension. Chen F, Wang C, Dai W, Jiang X, Mohammed N, Al Aziz MM, Sadat MN, Sahinalp C, Lauter K, Wang S BMC medical genomics 28786365 BMC Med Genomics 2017 Jul 26 https://www.ncbi.nlm.nih.gov/pubmed/28786365
A community effort to protect genomic data sharing, collaboration and outsourcing. Wang S, Jiang X, Tang H, Wang X, Bu D, Carey K, Dyke SO, Fox D, Jiang C, Lauter K, Malin B, Sofia H, Telenti A, Wang L, Wang W, Ohno-Machado L NPJ genomic medicine 29263842 NPJ Genom Med 2017 https://www.ncbi.nlm.nih.gov/pubmed/29263842
Private and Efficient Query Processing on Outsourced Genomic Databases. Ghasemi R, Al Aziz MM, Mohammed N, Dehkordi MH, Jiang X IEEE journal of biomedical and health informatics 27834660 IEEE J Biomed Health Inform 2017 Sep https://www.ncbi.nlm.nih.gov/pubmed/27834660
SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution. Sadat MN, Al Aziz MM, Mohammed N, Chen F, Jiang X, Wang S IEEE/ACM transactions on computational biology and bioinformatics 29993695 IEEE/ACM Trans Comput Biol Bioinform 2019 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/29993695
Privacy-preserving biomedical data dissemination via a hybrid approach. Jiang Y, Wang C, Wu Z, Du X, Wang S AMIA ... Annual Symposium proceedings. AMIA Symposium 30815160 AMIA Annu Symp Proc 2018 https://www.ncbi.nlm.nih.gov/pubmed/30815160
The anatomy of a distributed predictive modeling framework: online learning, blockchain network, and consensus algorithm. Kuo TT JAMIA open 32734160 JAMIA Open 2020 Jul https://www.ncbi.nlm.nih.gov/pubmed/32734160
Privacy Policy and Technology in Biomedical Data Science. Arellano AM, Dai W, Wang S, Jiang X, Ohno-Machado L Annual review of biomedical data science 31058261 Annu Rev Biomed Data Sci 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/31058261
Practical and Efficient in-Enclave Verification of Privacy Compliance. Liu W, Wang W, Chen H, Wang X, Lu Y, Chen K, Wang X, Shen Q, Chen Y, Tang H Proceedings. International Conference on Dependable Systems and Networks 35919377 Proc (Int Conf Dependable Syst Netw) 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/35919377
Omicseq: a web-based search engine for exploring omics datasets. Sun X, Pittard WS, Xu T, Chen L, Zwick ME, Jiang X, Wang F, Qin ZS Nucleic acids research 28402462 Nucleic Acids Res 2017 Jul 3 https://www.ncbi.nlm.nih.gov/pubmed/28402462
Deep learning for healthcare: review, opportunities and challenges. Miotto R, Wang F, Wang S, Jiang X, Dudley JT Briefings in bioinformatics 28481991 Brief Bioinform 2018 Nov 27 https://www.ncbi.nlm.nih.gov/pubmed/28481991
Real-time Protection of Genomic Data Sharing in Beacon Services. Bu D, Wang X, Tang H AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 29888039 AMIA Jt Summits Transl Sci Proc 2018 https://www.ncbi.nlm.nih.gov/pubmed/29888039
Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation. Sadat MN, Jiang X, Aziz MMA, Wang S, Mohammed N JMIR medical informatics 29506966 JMIR Med Inform 2018 Mar 5 https://www.ncbi.nlm.nih.gov/pubmed/29506966
SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol. Jiang Y, Hamer J, Wang C, Jiang X, Kim M, Song Y, Xia Y, Mohammed N, Sadat MN, Wang S IEEE/ACM transactions on computational biology and bioinformatics 29994005 IEEE/ACM Trans Comput Biol Bioinform 2019 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/29994005
Distributed learning from multiple EHR databases: Contextual embedding models for medical events. Li Z, Roberts K, Jiang X, Long Q Journal of biomedical informatics 30825539 J Biomed Inform 2019 Apr https://www.ncbi.nlm.nih.gov/pubmed/30825539
Privacy-preserving model learning on a blockchain network-of-networks. Kuo TT, Kim J, Gabriel RA Journal of the American Medical Informatics Association : JAMIA 31943009 J Am Med Inform Assoc 2020 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/31943009
iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching. Kuo TT, Jiang X, Tang H, Wang X, Bath T, Bu D, Wang L, Harmanci A, Zhang S, Zhi D, Sofia HJ, Ohno-Machado L BMC medical genomics 32693816 BMC Med Genomics 2020 Jul 21 https://www.ncbi.nlm.nih.gov/pubmed/32693816
Efficient and Precise Secure Generalized Edit Distance and Beyond. Zhu R, Huang Y IEEE transactions on dependable and secure computing 37020740 IEEE Trans Dependable Secure Comput 2022 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/37020740
Haplotype-based membership inference from summary genomic data. Bu D, Wang X, Tang H Bioinformatics (Oxford, England) 34252973 Bioinformatics 2021 Jul 12 https://www.ncbi.nlm.nih.gov/pubmed/34252973
Development and application of two semi-automated tools for targeted medical product surveillance in a distributed data network. Connolly JG, Wang SV, Fuller CC, Toh S, Panozzo CA, Cocoros N, Zhou M, Gagne JJ, Maro JC Current epidemiology reports 29204333 Curr Epidemiol Rep 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/29204333
Analytic and Data Sharing Options in Real-World Multidatabase Studies of Comparative Effectiveness and Safety of Medical Products. Toh S Clinical pharmacology and therapeutics 31869442 Clin Pharmacol Ther 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/31869442
Privacy-protecting estimation of adjusted risk ratios using modified Poisson regression in multi-center studies. Shu D, Young JG, Toh S BMC medical research methodology 31805872 BMC Med Res Methodol 2019 Dec 5 https://www.ncbi.nlm.nih.gov/pubmed/31805872
Safe Expectations: Current State and Future Directions for Medication Safety in Pregnancy Research. Wood ME, Andrade SE, Toh S Clinical therapeutics 31563392 Clin Ther 2019 Dec https://www.ncbi.nlm.nih.gov/pubmed/31563392
Variance estimation in inverse probability weighted Cox models. Shu D, Young JG, Toh S, Wang R Biometrics 32662087 Biometrics 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/32662087
Comparison of privacy-protecting analytic and data-sharing methods: A simulation study. Yoshida K, Gruber S, Fireman BH, Toh S Pharmacoepidemiology and drug safety 30022561 Pharmacoepidemiol Drug Saf 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/30022561
Estimating Effects of Dynamic Treatment Strategies in Pharmacoepidemiologic Studies with Time-varying Confounding: A Primer. Li X, Young JG, Toh S Current epidemiology reports 29204332 Curr Epidemiol Rep 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/29204332
Validity of Privacy-Protecting Analytical Methods That Use Only Aggregate-Level Information to Conduct Multivariable-Adjusted Analysis in Distributed Data Networks. Li X, Fireman BH, Curtis JR, Arterburn DE, Fisher DP, Moyneur É, Gallagher M, Raebel MA, Nowell WB, Lagreid L, Toh S American journal of epidemiology 30535131 Am J Epidemiol 2019 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/30535131
Using machine learning to identify health outcomes from electronic health record data. Wong J, Horwitz MM, Zhou L, Toh S Current epidemiology reports 30555773 Curr Epidemiol Rep 2018 Dec https://www.ncbi.nlm.nih.gov/pubmed/30555773
Distributed Regression Analysis Application in Large Distributed Data Networks: Analysis of Precision and Operational Performance. Her Q, Malenfant J, Zhang Z, Vilk Y, Young J, Tabano D, Hamilton J, Johnson R, Raebel M, Boudreau D, Toh S JMIR medical informatics 32496200 JMIR Med Inform 2020 Jun 4 https://www.ncbi.nlm.nih.gov/pubmed/32496200
Suitability of administrative claims databases for bariatric surgery research - is the glass half-full or half-empty? Li X, Lewis KH, Callaway K, Wharam JF, Toh S BMC medical research methodology 32894060 BMC Med Res Methodol 2020 Sep 7 https://www.ncbi.nlm.nih.gov/pubmed/32894060
Inverse probability weighted Cox model in multi-site studies without sharing individual-level data. Shu D, Yoshida K, Fireman BH, Toh S Statistical methods in medical research 31448681 Stat Methods Med Res 2020 Jun https://www.ncbi.nlm.nih.gov/pubmed/31448681
ppmHR: A Privacy-protecting Tool to Fit Inverse Probability Weighted Cox Models in Multisite Studies. Shu D, Toh S Epidemiology (Cambridge, Mass.) 33165009 Epidemiology 2021 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/33165009
Pharmacoepidemiology in the era of real-world evidence. Toh S Current epidemiology reports 29204331 Curr Epidemiol Rep 2017 Dec https://www.ncbi.nlm.nih.gov/pubmed/29204331
Automatable Distributed Regression Analysis of Vertically Partitioned Data Facilitated by PopMedNet: Feasibility and Enhancement Study. Her Q, Kent T, Samizo Y, Slavkovic A, Vilk Y, Toh S JMIR medical informatics 33890866 JMIR Med Inform 2021 Apr 23 https://www.ncbi.nlm.nih.gov/pubmed/33890866
Using information technology to improve surveillance of antimicrobial resistance in South East Asia. Vong S, Anciaux A, Hulth A, Stelling J, Thamlikitkul V, Gupta S, Fuks JM, Walia K, Rattanumpawan P, Eremin S, Tisocki K, Sedai TR, Sharma A BMJ (Clinical research ed.) 28874344 BMJ 2017 Sep 5 https://www.ncbi.nlm.nih.gov/pubmed/28874344
Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data. Hicks AL, Wheeler N, Sánchez-Busó L, Rakeman JL, Harris SR, Grad YH PLoS computational biology 31479500 PLoS Comput Biol 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/31479500
Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013-2014. Chilam J, Argimón S, Limas MT, Masim ML, Gayeta JM, Lagrada ML, Olorosa AM, Cohen V, Hernandez LT, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Holden MTG, Stelling J, Aanensen DM, Carlos CC, Philippines Antimicrobial Resistance Surveillance Program Western Pacific surveillance and response journal : WPSAR 35251744 Western Pac Surveill Response J 2021 Oct-Dec https://www.ncbi.nlm.nih.gov/pubmed/35251744
Comparison of de-duplication methods used by WHO Global Antimicrobial Resistance Surveillance System (GLASS) and Japan Nosocomial Infections Surveillance (JANIS) in the surveillance of antimicrobial resistance. Kajihara T, Yahara K, Stelling J, Eremin SR, Tornimbene B, Thamlikitkul V, Hirabayashi A, Anzai E, Wakai S, Matsunaga N, Hayakawa K, Ohmagari N, Sugai M, Shibayama K PloS one 32589639 PLoS One 2020 https://www.ncbi.nlm.nih.gov/pubmed/32589639
Staphylococcus aureus antimicrobial susceptibility trends and cluster detection in Vermont: 2012-2018. Stelling J, Read JS, Peters R, Clark A, Bokhari M, O'Brien TF Expert review of anti-infective therapy 33131354 Expert Rev Anti Infect Ther 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/33131354
Surveillance of antimicrobial resistance and evolving microbial populations in Vermont: 2011-2018. Stelling J, Read JS, Fritch W, O'Brien TF, Peters R, Clark A, Bokhari M, Lion M, Katwa P, Kelso P Expert review of anti-infective therapy 32552054 Expert Rev Anti Infect Ther 2020 Oct https://www.ncbi.nlm.nih.gov/pubmed/32552054
Statistical detection of geographic clusters of resistant Escherichia coli in a regional network with WHONET and SaTScan. Park R, O'Brien TF, Huang SS, Baker MA, Yokoe DS, Kulldorff M, Barrett C, Swift J, Stelling J, Centers for Disease Control and Prevention Epicenters Program Expert review of anti-infective therapy 27530311 Expert Rev Anti Infect Ther 2016 Nov https://www.ncbi.nlm.nih.gov/pubmed/27530311
Automated detection of outbreaks of antimicrobial-resistant bacteria in Japan. Tsutsui A, Yahara K, Clark A, Fujimoto K, Kawakami S, Chikumi H, Iguchi M, Yagi T, Baker MA, O'Brien T, Stelling J The Journal of hospital infection 30321629 J Hosp Infect 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/30321629
We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts? Wheeler N Thorax 31331948 Thorax 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/31331948
Genomic surveillance of Salmonella spp. in the Philippines during 2013-2014. Lagrada ML, Argimón S, Borlasa JB, Abad JP, Gayeta JM, Masim ML, Olorosa AM, Cohen V, Jeffrey B, Abudahab K, Sia SB, Hufano CM, Stelling J, Holden MTG, Aanensen DM, Carlos CC Transactions of the Royal Society of Tropical Medicine and Hygiene 35999186 Trans R Soc Trop Med Hyg 2022 Dec 2 https://www.ncbi.nlm.nih.gov/pubmed/35999186
Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013-2014. Jamoralin MC Jr, Argimón S, Lagrada ML, Villamin AS, Masim ML, Gayeta JM, Boehme KD, Olorosa AM, Sia SB, Hufano CM, Cohen V, Hernandez LT, Jeffrey B, Abudahab K, Stelling J, Holden MTG, Aanensenb DM, e,*, Carlosa CC, Philippines Antimicrobial Resistance Surveillance Program Western Pacific surveillance and response journal : WPSAR 34094619 Western Pac Surveill Response J 2021 Jan-Mar https://www.ncbi.nlm.nih.gov/pubmed/34094619
Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR): Holistic Approach to Unravel Antibacterial Resistance in East Africa (HATUA). Asiimwe BB, Kiiru J, Mshana SE, Neema S, Keenan K, Kesby M, Mwanga JR, Sloan DJ, Mmbaga BT, Smith VA, Gillespie SH, Lynch AG, Sandeman A, Stelling J, Elliott A, Aanensen DM, Kibiki GE, Sabiiti W, Holden MTG, HATUA Consortium BMJ open 34006022 BMJ Open 2021 Mar 8 https://www.ncbi.nlm.nih.gov/pubmed/34006022
Modelling Interventions to Combat Antibacterial Resistance in East Africa Using Causal Bayesian Networks. Ke X, Smith VA, Mshana SE, Asiimwe B, Neema S, Kiiru J, Mushi MF, Mmbaga BT, Mwanga JR, Kibiki G, Stelling J, Gillespie SH, Green DL, Benvari S, Sabiiti W, Kesby M, Lynch AG, Sandeman A, Sloan DJ, Holden MT, Keenan K, HATUA Consortium Research square 39975933 Res Sq 2025 Feb 4 https://www.ncbi.nlm.nih.gov/pubmed/39975933
Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines. Argimón S, Masim MAL, Gayeta JM, Lagrada ML, Macaranas PKV, Cohen V, Limas MT, Espiritu HO, Palarca JC, Chilam J, Jamoralin MC Jr, Villamin AS, Borlasa JB, Olorosa AM, Hernandez LFT, Boehme KD, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Stelling J, Holden MTG, Aanensen DM, Carlos CC Nature communications 32483195 Nat Commun 2020 Jun 1 https://www.ncbi.nlm.nih.gov/pubmed/32483195
Exploring the value of MALDI-TOF MS for the detection of clonal outbreaks of Burkholderia contaminans. Fiamanya S, Cipolla L, Prieto M, Stelling J Journal of microbiological methods 33383044 J Microbiol Methods 2021 Feb https://www.ncbi.nlm.nih.gov/pubmed/33383044
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance. Nadon C, Van Walle I, Gerner-Smidt P, Campos J, Chinen I, Concepcion-Acevedo J, Gilpin B, Smith AM, Man Kam K, Perez E, Trees E, Kubota K, Takkinen J, Nielsen EM, Carleton H, FWD-NEXT Expert Panel Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 28662764 Euro Surveill 2017 Jun 8 https://www.ncbi.nlm.nih.gov/pubmed/28662764
Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. Baker KS, Campos J, Pichel M, Della Gaspera A, Duarte-Martínez F, Campos-Chacón E, Bolaños-Acuña HM, Guzmán-Verri C, Mather AE, Diaz Velasco S, Zamudio Rojas ML, Forbester JL, Connor TR, Keddy KH, Smith AM, López de Delgado EA, Angiolillo G, Cuaical N, Fernández J, Aguayo C, Morales Aguilar M, Valenzuela C, Morales Medrano AJ, Sirok A, Weiler Gustafson N, Diaz Guevara PL, Montaño LA, Perez E, Thomson NR Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 28389276 Clin Microbiol Infect 2017 Nov https://www.ncbi.nlm.nih.gov/pubmed/28389276
Use of WHONET-SaTScan system for simulated real-time detection of antimicrobial resistance clusters in a hospital in Italy, 2012 to 2014. Natale A, Stelling J, Meledandri M, Messenger LA, D'Ancona F Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 28333615 Euro Surveill 2017 Mar 16 https://www.ncbi.nlm.nih.gov/pubmed/28333615
Why surveillance of antimicrobial resistance needs to be automated and comprehensive. O'Brien TF, Clark A, Peters R, Stelling J Journal of global antimicrobial resistance 30326273 J Glob Antimicrob Resist 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/30326273
Automated outbreak detection of hospital-associated pathogens: Value to infection prevention programs. Baker MA, Yokoe DS, Stelling J, Kleinman K, Kaganov RE, Letourneau AR, Varma N, O'Brien T, Kulldorff M, Babalola D, Barrett C, Drees M, Coady MH, Isaacs A, Platt R, Huang SS, CDC Prevention Epicenters Program Infection control and hospital epidemiology 32519624 Infect Control Hosp Epidemiol 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/32519624
Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014. Chilam J, Argimón S, Limas MT, Masim ML, Gayeta JM, Lagrada ML, Olorosa AM, Cohen V, Hernandez LT, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Holden MTG, Stelling J, Aanensen DM, Carlos CC, Philippines Antimicrobial Resistance Surveillance Program Western Pacific surveillance and response journal : WPSAR 34540307 Western Pac Surveill Response J 2021 Apr-Jun https://www.ncbi.nlm.nih.gov/pubmed/34540307
Genomic surveillance of methicillin-resistant Staphylococcus aureus in the Philippines, 
2013-2014. Masim ML, Argimón S, Espiritu HO, Magbanua MA, Lagrada ML, Olorosa AM, Cohen V, Gayeta JM, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Holden MTG, Stelling J, Aanensen DM, Carlos CC, Philippines Antimicrobial Resistance Surveillance Program Western Pacific surveillance and response journal : WPSAR 34094618 Western Pac Surveill Response J 2021 Jan-Mar https://www.ncbi.nlm.nih.gov/pubmed/34094618
Phantom PAINS: Problems with the Utility of Alerts for Pan-Assay INterference CompoundS. Capuzzi SJ, Muratov EN, Tropsha A Journal of chemical information and modeling 28165734 J Chem Inf Model 2017 Mar 27 https://www.ncbi.nlm.nih.gov/pubmed/28165734
Computer-Aided Discovery and Characterization of Novel Ebola Virus Inhibitors. Capuzzi SJ, Sun W, Muratov EN, Martínez-Romero C, He S, Zhu W, Li H, Tawa G, Fisher EG, Xu M, Shinn P, Qiu X, García-Sastre A, Zheng W, Tropsha A Journal of medicinal chemistry 29624387 J Med Chem 2018 Apr 26 https://www.ncbi.nlm.nih.gov/pubmed/29624387
Multi-Descriptor Read Across (MuDRA): A Simple and Transparent Approach for Developing Accurate Quantitative Structure-Activity Relationship Models. Alves VM, Golbraikh A, Capuzzi SJ, Liu K, Lam WI, Korn DR, Pozefsky D, Andrade CH, Muratov EN, Tropsha A Journal of chemical information and modeling 29809005 J Chem Inf Model 2018 Jun 25 https://www.ncbi.nlm.nih.gov/pubmed/29809005
QSAR-Driven Design and Discovery of Novel Compounds With Antiplasmodial and Transmission Blocking Activities. Lima MNN, Melo-Filho CC, Cassiano GC, Neves BJ, Alves VM, Braga RC, Cravo PVL, Muratov EN, Calit J, Bargieri DY, Costa FTM, Andrade CH Frontiers in pharmacology 29559909 Front Pharmacol 2018 https://www.ncbi.nlm.nih.gov/pubmed/29559909
Chemistry-Wide Association Studies (CWAS): A Novel Framework for Identifying and Interpreting Structure-Activity Relationships. Low YS, Alves VM, Fourches D, Sedykh A, Andrade CH, Muratov EN, Rusyn I, Tropsha A Journal of chemical information and modeling 30376324 J Chem Inf Model 2018 Nov 26 https://www.ncbi.nlm.nih.gov/pubmed/30376324
Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase. O'Banion CP, Priestman MA, Hughes RM, Herring LE, Capuzzi SJ, Lawrence DS Cell chemical biology 29104065 Cell Chem Biol 2018 Jan 18 https://www.ncbi.nlm.nih.gov/pubmed/29104065
Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides? Alves VM, Muratov EN, Zakharov A, Muratov NN, Andrade CH, Tropsha A Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association 28412406 Food Chem Toxicol 2018 Feb https://www.ncbi.nlm.nih.gov/pubmed/28412406
Engineered BRET-Based Biologic Light Sources Enable Spatiotemporal Control over Diverse Optogenetic Systems. Parag-Sharma K, O'Banion CP, Henry EC, Musicant AM, Cleveland JL, Lawrence DS, Amelio AL ACS synthetic biology 31834783 ACS Synth Biol 2020 Jan 17 https://www.ncbi.nlm.nih.gov/pubmed/31834783
Optogenetic perturbation of the biochemical pathways that control cell behavior. Haar LL, Lawrence DS, Hughes RM Methods in enzymology 31155059 Methods Enzymol 2019 https://www.ncbi.nlm.nih.gov/pubmed/31155059
COVID-19 Knowledge Extractor (COKE): A Tool and a Web Portal to Extract Drug - Target Protein Associations from the CORD-19 Corpus of Scientific Publications on COVID-19. Korn D, Pervitsky V, Bobrowski T, Alves VM, Schmitt C, Bizon C, Baker N, Chirkova R, Cherkasov A, Muratov E, Tropsha A ChemRxiv : the preprint server for chemistry 33269341 ChemRxiv 2020 Nov 26 https://www.ncbi.nlm.nih.gov/pubmed/33269341
Applying a Gene Reversal Rate Computational Methodology to Identify Drugs for a Rare Cancer: Inflammatory Breast Cancer. Ji X, Williams KP, Zheng W Cancer informatics 37846218 Cancer Inform 2023 https://www.ncbi.nlm.nih.gov/pubmed/37846218
Pharmacokinetics Profiler (PhaKinPro): Model Development, Validation, and Implementation as a Web Tool for Triaging Compounds with Undesired Pharmacokinetics Profiles. Rath M, Wellnitz J, Martin HJ, Melo-Filho C, Hochuli JE, Silva GM, Beasley JM, Travis M, Sessions ZL, Popov KI, Zakharov AV, Cherkasov A, Alves V, Muratov EN, Tropsha A Journal of medicinal chemistry 38568752 J Med Chem 2024 Apr 25 https://www.ncbi.nlm.nih.gov/pubmed/38568752
Pred-Skin: A Web Portal for Accurate Prediction of Human Skin Sensitizers. Borba JVB, Braga RC, Alves VM, Muratov EN, Kleinstreuer N, Tropsha A, Andrade CH Chemical research in toxicology 32673477 Chem Res Toxicol 2021 Feb 15 https://www.ncbi.nlm.nih.gov/pubmed/32673477
SCAM Detective: Accurate Predictor of Small, Colloidally Aggregating Molecules. Alves VM, Capuzzi SJ, Braga RC, Korn D, Hochuli JE, Bowler KH, Yasgar A, Rai G, Simeonov A, Muratov EN, Zakharov AV, Tropsha A Journal of chemical information and modeling 32678597 J Chem Inf Model 2020 Aug 24 https://www.ncbi.nlm.nih.gov/pubmed/32678597
Discovery of Synergistic and Antagonistic Drug Combinations against SARS-CoV-2 In Vitro. Bobrowski T, Chen L, Eastman RT, Itkin Z, Shinn P, Chen C, Guo H, Zheng W, Michael S, Simeonov A, Hall MD, Zakharov AV, Muratov EN bioRxiv : the preprint server for biology 32637956 bioRxiv 2020 Jun 30 https://www.ncbi.nlm.nih.gov/pubmed/32637956
Synergistic and Antagonistic Drug Combinations against SARS-CoV-2. Bobrowski T, Chen L, Eastman RT, Itkin Z, Shinn P, Chen CZ, Guo H, Zheng W, Michael S, Simeonov A, Hall MD, Zakharov AV, Muratov EN Molecular therapy : the journal of the American Society of Gene Therapy 33333292 Mol Ther 2021 Feb 3 https://www.ncbi.nlm.nih.gov/pubmed/33333292
Predicting Adverse Drug Effects from Literature- and Database-Mined Assertions. La MK, Sedykh A, Fourches D, Muratov E, Tropsha A Drug safety 29876834 Drug Saf 2018 Nov https://www.ncbi.nlm.nih.gov/pubmed/29876834
Chemotext: A Publicly Available Web Server for Mining Drug-Target-Disease Relationships in PubMed. Capuzzi SJ, Thornton TE, Liu K, Baker N, Lam WI, O'Banion CP, Muratov EN, Pozefsky D, Tropsha A Journal of chemical information and modeling 29300482 J Chem Inf Model 2018 Feb 26 https://www.ncbi.nlm.nih.gov/pubmed/29300482
Cheminformatics-driven discovery of polymeric micelle formulations for poorly soluble drugs. Alves VM, Hwang D, Muratov E, Sokolsky-Papkov M, Varlamova E, Vinod N, Lim C, Andrade CH, Tropsha A, Kabanov A Science advances 31249867 Sci Adv 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/31249867
Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases. O'Banion CP, Vickerman BM, Haar L, Lawrence DS Cell chemical biology 31353320 Cell Chem Biol 2019 Oct 17 https://www.ncbi.nlm.nih.gov/pubmed/31353320
Knowledge-based approaches to drug discovery for rare diseases. Alves VM, Korn D, Pervitsky V, Thieme A, Capuzzi SJ, Baker N, Chirkova R, Ekins S, Muratov EN, Hickey A, Tropsha A Drug discovery today 34718207 Drug Discov Today 2022 Feb https://www.ncbi.nlm.nih.gov/pubmed/34718207
QSAR-driven design, synthesis and discovery of potent chalcone derivatives with antitubercular activity. Gomes MN, Braga RC, Grzelak EM, Neves BJ, Muratov E, Ma R, Klein LL, Cho S, Oliveira GR, Franzblau SG, Andrade CH European journal of medicinal chemistry 28582669 Eur J Med Chem 2017 Sep 8 https://www.ncbi.nlm.nih.gov/pubmed/28582669
COVID-KOP: Integrating Emerging COVID-19 Data with the ROBOKOP Database. Korn D, Bobrowski T, Li M, Kebede Y, Wang P, Owen P, Vaidya G, Muratov E, Chirkova R, Bizon C, Tropsha A ChemRxiv : the preprint server for chemistry 32601612 ChemRxiv 2020 Jun 18 https://www.ncbi.nlm.nih.gov/pubmed/32601612
Unveiling the Kinomes of Leishmania infantum and L. braziliensis Empowers the Discovery of New Kinase Targets and Antileishmanial Compounds. Borba JVB, Silva AC, Ramos PIP, Grazzia N, Miguel DC, Muratov EN, Furnham N, Andrade CH Computational and structural biotechnology journal 30949306 Comput Struct Biotechnol J 2019 https://www.ncbi.nlm.nih.gov/pubmed/30949306
Correction to "Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold". Ferguson FM, Liu Y, Harshbarger W, Huang L, Wang J, Deng X, Capuzzi SJ, Muratov EN, Tropsha A, Muthuswamy S, Westover KD, Gray NS Journal of medicinal chemistry 32790356 J Med Chem 2020 Sep 10 https://www.ncbi.nlm.nih.gov/pubmed/32790356
Literature-Wide Association Studies (LWAS) for a Rare Disease: Drug Repurposing for Inflammatory Breast Cancer. Ji X, Jin C, Dong X, Dixon MS, Williams KP, Zheng W Molecules (Basel, Switzerland) 32872166 Molecules 2020 Aug 28 https://www.ncbi.nlm.nih.gov/pubmed/32872166
A critical overview of computational approaches employed for COVID-19 drug discovery. Muratov EN , Amaro R , Andrade CH , Brown N , Ekins S , Fourches D , Isayev O , Kozakov D , Medina-Franco JL , Merz KM , Oprea TI , Poroikov V , Schneider G , Todd MH , Varnek A , Winkler DA , Zakharov AV , Cherkasov A , Tropsha A Chemical Society reviews 34212944 Chem Soc Rev 2021 Aug 21 https://www.ncbi.nlm.nih.gov/pubmed/34212944
STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity. Borba JVB, Alves VM, Braga RC, Korn DR, Overdahl K, Silva AC, Hall SUS, Overdahl E, Kleinstreuer N, Strickland J, Allen D, Andrade CH, Muratov EN, Tropsha A Environmental health perspectives 35192406 Environ Health Perspect 2022 Feb https://www.ncbi.nlm.nih.gov/pubmed/35192406
Modernization of Enoxaparin Molecular Weight Determination Using Homogeneous Standards. Arnold KM, Capuzzi SJ, Xu Y, Muratov EN, Carrick K, Szajek AY, Tropsha A, Liu J Pharmaceuticals (Basel, Switzerland) 28737679 Pharmaceuticals (Basel) 2017 Jul 22 https://www.ncbi.nlm.nih.gov/pubmed/28737679
Computer-aided discovery of two novel chalcone-like compounds active and selective against Leishmania infantum. Gomes MN, Alcântara LM, Neves BJ, Melo-Filho CC, Freitas-Junior LH, Moraes CB, Ma R, Franzblau SG, Muratov E, Andrade CH Bioorganic & medicinal chemistry letters 28434763 Bioorg Med Chem Lett 2017 Jun 1 https://www.ncbi.nlm.nih.gov/pubmed/28434763
Chalcone Derivatives: Promising Starting Points for Drug Design. Gomes MN, Muratov EN, Pereira M, Peixoto JC, Rosseto LP, Cravo PVL, Andrade CH, Neves BJ Molecules (Basel, Switzerland) 28757583 Molecules 2017 Jul 25 https://www.ncbi.nlm.nih.gov/pubmed/28757583
Quantitative high-throughput phenotypic screening of pediatric cancer cell lines identifies multiple opportunities for drug repurposing. Shen M, Asawa R, Zhang YQ, Cunningham E, Sun H, Tropsha A, Janzen WP, Muratov EN, Capuzzi SJ, Farag S, Jadhav A, Blatt J, Simeonov A, Martinez NJ Oncotarget 29435139 Oncotarget 2018 Jan 12 https://www.ncbi.nlm.nih.gov/pubmed/29435139
Reproducibility, sharing and progress in nanomaterial databases. Tropsha A, Mills KC, Hickey AJ Nature nanotechnology 29209007 Nat Nanotechnol 2017 Dec 6 https://www.ncbi.nlm.nih.gov/pubmed/29209007
A bibliometric review of drug repurposing. Baker NC, Ekins S, Williams AJ, Tropsha A Drug discovery today 29330123 Drug Discov Today 2018 Mar https://www.ncbi.nlm.nih.gov/pubmed/29330123
Deep Learning-driven research for drug discovery: Tackling Malaria. Neves BJ, Braga RC, Alves VM, Lima MNN, Cassiano GC, Muratov EN, Costa FTM, Andrade CH PLoS computational biology 32069285 PLoS Comput Biol 2020 Feb https://www.ncbi.nlm.nih.gov/pubmed/32069285
Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold. Ferguson FM, Liu Y, Harshbarger W, Huang L, Wang J, Deng X, Capuzzi SJ, Muratov EN, Tropsha A, Muthuswamy S, Westover KD, Gray NS Journal of medicinal chemistry 32530623 J Med Chem 2020 Jul 23 https://www.ncbi.nlm.nih.gov/pubmed/32530623
Design, construction, and validation of optogenetic proteins. O'Banion CP, Goswami A, Lawrence DS Methods in enzymology 31128778 Methods Enzymol 2019 https://www.ncbi.nlm.nih.gov/pubmed/31128778
QSAR without borders. Muratov EN, Bajorath J, Sheridan RP, Tetko IV, Filimonov D, Poroikov V, Oprea TI, Baskin II, Varnek A, Roitberg A, Isayev O, Curtarolo S, Fourches D, Cohen Y, Aspuru-Guzik A, Winkler DA, Agrafiotis D, Cherkasov A, Tropsha A Chemical Society reviews 32356548 Chem Soc Rev 2020 Jun 7 https://www.ncbi.nlm.nih.gov/pubmed/32356548
Learning from history: do not flatten the curve of antiviral research! Bobrowski T, Melo-Filho CC, Korn D, Alves VM, Popov KI, Auerbach S, Schmitt C, Moorman NJ, Muratov EN, Tropsha A Drug discovery today 32679173 Drug Discov Today 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/32679173
A semantic similarity based methodology for predicting protein-protein interactions: Evaluation with P53-interacting kinases. Cox S, Dong X, Rai R, Christopherson L, Zheng W, Tropsha A, Schmitt C Journal of biomedical informatics 33007449 J Biomed Inform 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/33007449
COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database. Korn D, Bobrowski T, Li M, Kebede Y, Wang P, Owen P, Vaidya G, Muratov E, Chirkova R, Bizon C, Tropsha A Bioinformatics (Oxford, England) 33175089 Bioinformatics 2021 May 1 https://www.ncbi.nlm.nih.gov/pubmed/33175089
The SistematX Web Portal of Natural Products: An Update. Costa RPO, Lucena LF, Silva LMA, Zocolo GJ, Herrera-Acevedo C, Scotti L, Da-Costa FB, Ionov N, Poroikov V, Muratov EN, Scotti MT Journal of chemical information and modeling 34014674 J Chem Inf Model 2021 Jun 28 https://www.ncbi.nlm.nih.gov/pubmed/34014674
Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses. Moon C, Jin C, Dong X, Abrar S, Zheng W, Chirkova RY, Tropsha A Journal of biomedical informatics 34119691 J Biomed Inform 2021 Jul https://www.ncbi.nlm.nih.gov/pubmed/34119691
A Novel Machine Learning Model Developed to Assist in Patient Selection for Outpatient Total Shoulder Arthroplasty. Biron DR, Sinha I, Kleiner JE, Aluthge DP, Goodman AD, Sarkar IN, Cohen E, Daniels AH The Journal of the American Academy of Orthopaedic Surgeons 31663914 J Am Acad Orthop Surg 2020 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/31663914
Association Between the Economic Environment and the Living Organ Donation Rate: Evidence and Implications. Lee SS, Sielski MW, Charpentier KP Journal of the American College of Surgeons 33197569 J Am Coll Surg 2021 Feb https://www.ncbi.nlm.nih.gov/pubmed/33197569
Machine Learning Offers Exciting Potential for Predicting Postprocedural Outcomes: A Framework for Developing Random Forest Models in IR. Sinha I, Aluthge DP, Chen ES, Sarkar IN, Ahn SH Journal of vascular and interventional radiology : JVIR 32376173 J Vasc Interv Radiol 2020 Jun https://www.ncbi.nlm.nih.gov/pubmed/32376173
Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data. Brown KA, Sarkar IN, Chen ES AMIA ... Annual Symposium proceedings. AMIA Symposium 33936398 AMIA Annu Symp Proc 2020 https://www.ncbi.nlm.nih.gov/pubmed/33936398
Ten simple rules for an inclusive summer coding program for non-computer-science undergraduates. Pennings P, Banuelos MM, Catalan FL, Caudill VR, Chakalov B, Hernandez S, Jones J, Okorie C, Modrek S, Rohlfs R, Adelstein N PLoS computational biology 32881872 PLoS Comput Biol 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/32881872
SMARTS: the social media-based addiction recovery and intervention targeting server. Jha D, Singh R Bioinformatics (Oxford, England) 31647520 Bioinformatics 2019 Oct 24 https://www.ncbi.nlm.nih.gov/pubmed/31647520
Associations between forensic loci and expression levels of neighboring genes may compromise medical privacy. Bañuelos MM, Zavaleta YJA, Roldan A, Reyes RJ, Guardado M, Chavez Rojas B, Nyein T, Rodriguez Vega A, Santos M, Huerta-Sanchez E, Rohlfs RV Proceedings of the National Academy of Sciences of the United States of America 36166477 Proc Natl Acad Sci U S A 2022 Oct 4 https://www.ncbi.nlm.nih.gov/pubmed/36166477
Contraception information on the websites of student health centers in the United States. Kakar V, Kulkarni A, Holschuh C, Smirnova A, Modrek S Contraception 35085543 Contraception 2022 Aug https://www.ncbi.nlm.nih.gov/pubmed/35085543
Social Media Activism and Convergence in Tweet Topics After the Initial #MeToo Movement for Two Distinct Groups of Twitter Users. Baik JM, Nyein TH, Modrek S Journal of interpersonal violence 33840303 J Interpers Violence 2022 Aug https://www.ncbi.nlm.nih.gov/pubmed/33840303
Analysis of associations between emotions and activities of drug users and their addiction recovery tendencies from social media posts using structural equation modeling. Jha D, Singh R BMC bioinformatics 33375934 BMC Bioinformatics 2020 Dec 30 https://www.ncbi.nlm.nih.gov/pubmed/33375934
Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups. Huang Y, Liu Y, Steel PAD, Axsom KM, Lee JR, Tummalapalli SL, Wang F, Pathak J, Subramanian L, Zhang Y Journal of the American Medical Informatics Association : JAMIA 34571540 J Am Med Inform Assoc 2021 Nov 25 https://www.ncbi.nlm.nih.gov/pubmed/34571540
Extracting social determinants of health from electronic health records using natural language processing: a systematic review. Patra BG, Sharma MM, Vekaria V, Adekkanattu P, Patterson OV, Glicksberg B, Lepow LA, Ryu E, Biernacka JM, Furmanchuk A, George TJ, Hogan W, Wu Y, Yang X, Bian J, Weissman M, Wickramaratne P, Mann JJ, Olfson M, Campion TR, Weiner M, Pathak J Journal of the American Medical Informatics Association : JAMIA 34613399 J Am Med Inform Assoc 2021 Nov 25 https://www.ncbi.nlm.nih.gov/pubmed/34613399
Trends in psychiatric diagnoses by COVID-19 infection and hospitalization among patients with and without recent clinical psychiatric diagnoses in New York city from March 2020 to August 2021. Xiao Y, Sharma MM, Thiruvalluru RK, Gimbrone C, Weissman MM, Olfson M, Keyes KM, Pathak J Translational psychiatry 36414624 Transl Psychiatry 2022 Nov 21 https://www.ncbi.nlm.nih.gov/pubmed/36414624
Pro-SMP finder-A systematic approach for discovering small membrane proteins in prokaryotes. Hoffman T, Kinne J, Cho KH PloS one 38422081 PLoS One 2024 https://www.ncbi.nlm.nih.gov/pubmed/38422081
SillyPutty: Improved clustering by optimizing the silhouette width. Bombina P, Tally D, Abrams ZB, Coombes KR bioRxiv : the preprint server for biology 37986817 bioRxiv 2023 Nov 11 https://www.ncbi.nlm.nih.gov/pubmed/37986817
Pattern recognition in lymphoid malignancies using CytoGPS and Mercator. Abrams ZB, Tally DG, Zhang L, Coombes CE, Payne PRO, Abruzzo LV, Coombes KR BMC bioinformatics 33648439 BMC Bioinformatics 2021 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/33648439
RCytoGPS: an R package for reading and visualizing cytogenetics data. Abrams ZB, Tally DG, Abruzzo LV, Coombes KR Bioinformatics (Oxford, England) 34601554 Bioinformatics 2021 Dec 7 https://www.ncbi.nlm.nih.gov/pubmed/34601554
Developing a Suite of Online Learning Modules on the Components of Next-Generation Sequencing Projects. Wright RA Medical reference services quarterly 32069203 Med Ref Serv Q 2020 Jan-Mar https://www.ncbi.nlm.nih.gov/pubmed/32069203
Anticipating innovations in structural biology. Berman HM, Lawson CL, Vallat B, Gabanyi MJ Quarterly reviews of biophysics 30912485 Q Rev Biophys 2018 Jan https://www.ncbi.nlm.nih.gov/pubmed/30912485
A model for initiating research data management services at academic libraries. Read KB, Koos J, Miller RS, Miller CF, Phillips GA, Scheinfeld L, Surkis A Journal of the Medical Library Association : JMLA 31258450 J Med Libr Assoc 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/31258450
A two-tiered curriculum to improve data management practices for researchers. Read KB, Larson C, Gillespie C, Oh SY, Surkis A PloS one 31042776 PLoS One 2019 https://www.ncbi.nlm.nih.gov/pubmed/31042776
Using Smart City Technology to Make Healthcare Smarter. Cook DJ, Duncan G, Sprint G, Fritz R Proceedings of the IEEE. Institute of Electrical and Electronics Engineers 29628528 Proc IEEE Inst Electr Electron Eng 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/29628528
A nurse-driven method for developing artificial intelligence in "smart" homes for aging-in-place. Fritz RL, Dermody G Nursing outlook 30551883 Nurs Outlook 2019 Mar-Apr https://www.ncbi.nlm.nih.gov/pubmed/30551883
Characterising omission errors in everyday task completion and cognitive correlates in individuals with mild cognitive impairment and dementia. Beaver J, Wilson KB, Schmitter-Edgecombe M Neuropsychological rehabilitation 28617099 Neuropsychol Rehabil 2019 Jun https://www.ncbi.nlm.nih.gov/pubmed/28617099
Indirectly-Supervised Anomaly Detection of Clinically-Meaningful Health Events from Smart Home Data. Dahmen J, Cook DJ ACM transactions on intelligent systems and technology 34336375 ACM Trans Intell Syst Technol 2021 Mar https://www.ncbi.nlm.nih.gov/pubmed/34336375
Memory-Aware Active Learning in Mobile Sensing Systems. Ashari ZE, Chaytor NS, Cook DJ, Ghasemzadeh H IEEE transactions on mobile computing 34970086 IEEE Trans Mob Comput 2022 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/34970086
Iterative Design of Visual Analytics for a Clinician-in-the-Loop Smart Home. Ghods A, Caffrey K, Lin B, Fraga K, Fritz R, Schmitter-Edgecombe M, Hundhausen C, Cook DJ IEEE journal of biomedical and health informatics 30106700 IEEE J Biomed Health Inform 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/30106700
Behavioral Differences Between Subject Groups Identified Using Smart Homes and Change Point Detection. Sprint G, Cook DJ, Fritz R IEEE journal of biomedical and health informatics 32750924 IEEE J Biomed Health Inform 2021 Feb https://www.ncbi.nlm.nih.gov/pubmed/32750924
sMRT: Multi-Resident Tracking in Smart Homes With Sensor Vectorization. Wang T, Cook DJ IEEE transactions on pattern analysis and machine intelligence 32070942 IEEE Trans Pattern Anal Mach Intell 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/32070942
Prompting Technology and Persons With Dementia: The Significance of Context and Communication. Braley R, Fritz R, Van Son CR, Schmitter-Edgecombe M The Gerontologist 29897450 Gerontologist 2019 Jan 9 https://www.ncbi.nlm.nih.gov/pubmed/29897450
Creating a digital memory notebook application for individuals with mild cognitive impairment to support everyday functioning. Raghunath N, Dahmen J, Brown K, Cook D, Schmitter-Edgecombe M Disability and rehabilitation. Assistive technology 30907223 Disabil Rehabil Assist Technol 2020 May https://www.ncbi.nlm.nih.gov/pubmed/30907223
A Survey of Unsupervised Deep Domain Adaptation. Wilson G, Cook DJ ACM transactions on intelligent systems and technology 34336374 ACM Trans Intell Syst Technol 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/34336374
SynSys: A Synthetic Data Generation System for Healthcare Applications. Dahmen J, Cook D Sensors (Basel, Switzerland) 30857130 Sensors (Basel) 2019 Mar 8 https://www.ncbi.nlm.nih.gov/pubmed/30857130
Learning Activity Predictors from Sensor Data: Algorithms, Evaluation, and Applications. Minor B, Doppa JR, Cook DJ IEEE transactions on knowledge and data engineering 29456436 IEEE Trans Knowl Data Eng 2017 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/29456436
Implementing Wearable Sensors for Continuous Assessment of Daytime Heart Rate Response in Inpatient Rehabilitation. Weeks DL, Sprint GL, Stilwill V, Meisen-Vehrs AL, Cook DJ Telemedicine journal and e-health : the official journal of the American Telemedicine Association 29608421 Telemed J E Health 2018 Apr 2 https://www.ncbi.nlm.nih.gov/pubmed/29608421
A conceptual framework for clinicians working with artificial intelligence and health-assistive Smart Homes. Dermody G, Fritz R Nursing inquiry 30417510 Nurs Inq 2019 Jan https://www.ncbi.nlm.nih.gov/pubmed/30417510
Robot-Enabled Support of Daily Activities in Smart Home Environments. Wilson G, Pereyda C, Raghunath N, de la Cruz G, Goel S, Nesaei S, Minor B, Schmitter-Edgecombe M, Taylor ME, Cook DJ Cognitive systems research 31565029 Cogn Syst Res 2019 May https://www.ncbi.nlm.nih.gov/pubmed/31565029
Context-Aware Delivery of Ecological Momentary Assessment. Aminikhanghahi S, Schmitter-Edgecombe M, Cook DJ IEEE journal of biomedical and health informatics 31443058 IEEE J Biomed Health Inform 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/31443058
Effects of initial planning on task execution performance of older adults: A naturalistic assessment paradigm. Brown KD, Schmitter-Edgecombe M Journal of clinical and experimental neuropsychology 31658865 J Clin Exp Neuropsychol 2020 Feb https://www.ncbi.nlm.nih.gov/pubmed/31658865
Interpreting Health Events in Big Data Using Qualitative Traditions. Fritz RL, Dermody G International journal of qualitative methods 33790703 Int J Qual Methods 2020 Jan-Dec https://www.ncbi.nlm.nih.gov/pubmed/33790703
GOnet: a tool for interactive Gene Ontology analysis. Pomaznoy M, Ha B, Peters B BMC bioinformatics 30526489 BMC Bioinformatics 2018 Dec 7 https://www.ncbi.nlm.nih.gov/pubmed/30526489
Minimal Information about MHC Multimers (MIAMM). Vita R, Mody A, Overton JA, Buus S, Haley ST, Sette A, Mallajosyula V, Davis MM, Long DL, Willis RA, Peters B, Altman JD Journal of immunology (Baltimore, Md. : 1950) 35042788 J Immunol 2022 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/35042788
Standardization of assay representation in the Ontology for Biomedical Investigations. Vita R, Zheng J, Jackson R, Dooley D, Overton JA, Miller MA, Berrios DC, Scheuermann RH, He Y, McGinty HK, Brochhausen M, Lin AY, Jain SB, Chibucos MC, Judkins J, Giglio MG, Feng IY, Burns G, Brush MH, Peters B, Stoeckert CJ Jr Database : the journal of biological databases and curation 34244718 Database (Oxford) 2021 Jul 9 https://www.ncbi.nlm.nih.gov/pubmed/34244718
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Jackson R, Matentzoglu N, Overton JA, Vita R, Balhoff JP, Buttigieg PL, Carbon S, Courtot M, Diehl AD, Dooley DM, Duncan WD, Harris NL, Haendel MA, Lewis SE, Natale DA, Osumi-Sutherland D, Ruttenberg A, Schriml LM, Smith B, Stoeckert CJ Jr, Vasilevsky NA, Walls RL, Zheng J, Mungall CJ, Peters B Database : the journal of biological databases and curation 34697637 Database (Oxford) 2021 Oct 26 https://www.ncbi.nlm.nih.gov/pubmed/34697637
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. Vita R, Overton JA, Mungall CJ, Sette A, Peters B Database : the journal of biological databases and curation 29688354 Database (Oxford) 2018 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/29688354
Reporting and connecting cell type names and gating definitions through ontologies. Overton JA, Vita R, Dunn P, Burel JG, Bukhari SAC, Cheung KH, Kleinstein SH, Diehl AD, Peters B BMC bioinformatics 31272390 BMC Bioinformatics 2019 Apr 25 https://www.ncbi.nlm.nih.gov/pubmed/31272390
A structured model for immune exposures. Vita R, Overton JA, Dunn P, Cheung KH, Kleinstein SH, Sette A, Peters B Database : the journal of biological databases and curation 32283555 Database (Oxford) 2020 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/32283555
Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation. Kalyuzhnyy A, Eyers PA, Eyers CE, Bowler-Barnett E, Martin MJ, Sun Z, Deutsch EW, Jones AR Journal of proteome research 35532924 J Proteome Res 2022 Jun 3 https://www.ncbi.nlm.nih.gov/pubmed/35532924
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. Choi M, Carver J, Chiva C, Tzouros M, Huang T, Tsai TH, Pullman B, Bernhardt OM, Hüttenhain R, Teo GC, Perez-Riverol Y, Muntel J, Müller M, Goetze S, Pavlou M, Verschueren E, Wollscheid B, Nesvizhskii AI, Reiter L, Dunkley T, Sabidó E, Bandeira N, Vitek O Nature methods 32929271 Nat Methods 2020 Oct https://www.ncbi.nlm.nih.gov/pubmed/32929271
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Omenn GS, Lane L, Overall CM, Lindskog C, Pineau C, Packer NH, Cristea IM, Weintraub ST, Orchard S, Roehrl MHA, Nice E, Guo T, Van Eyk JE, Liu S, Bandeira N, Aebersold R, Moritz RL, Deutsch EW Journal of proteome research 38232391 J Proteome Res 2024 Feb 2 https://www.ncbi.nlm.nih.gov/pubmed/38232391
Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project. Omenn GS, Lane L, Overall CM, Paik YK, Cristea IM, Corrales FJ, Lindskog C, Weintraub S, Roehrl MHA, Liu S, Bandeira N, Srivastava S, Chen YJ, Aebersold R, Moritz RL, Deutsch EW Journal of proteome research 34670092 J Proteome Res 2021 Dec 3 https://www.ncbi.nlm.nih.gov/pubmed/34670092
Advances and Utility of the Human Plasma Proteome. Deutsch EW, Omenn GS, Sun Z, Maes M, Pernemalm M, Palaniappan KK, Letunica N, Vandenbrouck Y, Brun V, Tao SC, Yu X, Geyer PE, Ignjatovic V, Moritz RL, Schwenk JM Journal of proteome research 34672606 J Proteome Res 2021 Dec 3 https://www.ncbi.nlm.nih.gov/pubmed/34672606
A high-stringency blueprint of the human proteome. Adhikari S, Nice EC, Deutsch EW, Lane L, Omenn GS, Pennington SR, Paik YK, Overall CM, Corrales FJ, Cristea IM, Van Eyk JE, Uhlén M, Lindskog C, Chan DW, Bairoch A, Waddington JC, Justice JL, LaBaer J, Rodriguez H, He F, Kostrzewa M, Ping P, Gundry RL, Stewart P, Srivastava S, Srivastava S, Nogueira FCS, Domont GB, Vandenbrouck Y, Lam MPY, Wennersten S, Vizcaino JA, Wilkins M, Schwenk JM, Lundberg E, Bandeira N, Marko-Varga G, Weintraub ST, Pineau C, Kusebauch U, Moritz RL, Ahn SB, Palmblad M, Snyder MP, Aebersold R, Baker MS Nature communications 33067450 Nat Commun 2020 Oct 16 https://www.ncbi.nlm.nih.gov/pubmed/33067450
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Hoffmann N, Rein J, Sachsenberg T, Hartler J, Haug K, Mayer G, Alka O, Dayalan S, Pearce JTM, Rocca-Serra P, Qi D, Eisenacher M, Perez-Riverol Y, Vizcaíno JA, Salek RM, Neumann S, Jones AR Analytical chemistry 30688441 Anal Chem 2019 Mar 5 https://www.ncbi.nlm.nih.gov/pubmed/30688441
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. Omenn GS, Lane L, Overall CM, Cristea IM, Corrales FJ, Lindskog C, Paik YK, Van Eyk JE, Liu S, Pennington SR, Snyder MP, Baker MS, Bandeira N, Aebersold R, Moritz RL, Deutsch EW Journal of proteome research 32931287 J Proteome Res 2020 Dec 4 https://www.ncbi.nlm.nih.gov/pubmed/32931287
Feature-based molecular networking in the GNPS analysis environment. Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, Cachet X, Caraballo-Rodriguez AM, Da Silva RR, Dang T, Garg N, Gauglitz JM, Gurevich A, Isaac G, Jarmusch AK, Kameník Z, Kang KB, Kessler N, Koester I, Korf A, Le Gouellec A, Ludwig M, Martin H C, McCall LI, McSayles J, Meyer SW, Mohimani H, Morsy M, Moyne O, Neumann S, Neuweger H, Nguyen NH, Nothias-Esposito M, Paolini J, Phelan VV, Pluskal T, Quinn RA, Rogers S, Shrestha B, Tripathi A, van der Hooft JJJ, Vargas F, Weldon KC, Witting M, Yang H, Zhang Z, Zubeil F, Kohlbacher O, Böcker S, Alexandrov T, Bandeira N, Wang M, Dorrestein PC Nature methods 32839597 Nat Methods 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/32839597
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. Perez-Riverol Y, Bai J, Bandla C, García-Seisdedos D, Hewapathirana S, Kamatchinathan S, Kundu DJ, Prakash A, Frericks-Zipper A, Eisenacher M, Walzer M, Wang S, Brazma A, Vizcaíno JA Nucleic acids research 34723319 Nucleic Acids Res 2022 Jan 7 https://www.ncbi.nlm.nih.gov/pubmed/34723319
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Deutsch EW, Vizcaíno JA, Jones AR, Binz PA, Lam H, Klein J, Bittremieux W, Perez-Riverol Y, Tabb DL, Walzer M, Ricard-Blum S, Hermjakob H, Neumann S, Mak TD, Kawano S, Mendoza L, Van Den Bossche T, Gabriels R, Bandeira N, Carver J, Pullman B, Sun Z, Hoffmann N, Shofstahl J, Zhu Y, Licata L, Quaglia F, Tosatto SCE, Orchard SE Journal of proteome research 36626722 J Proteome Res 2023 Feb 3 https://www.ncbi.nlm.nih.gov/pubmed/36626722
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA Jr, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, Navarro-Hoyos M, Jarmusch AK, Jarmusch SA, Louie K, Maloney KN, Marty MT, Meijler MM, Mizrahi I, Neve RL, Northen TR, Molina-Santiago C, Panitchpakdi M, Pullman B, Puri AW, Schmid R, Subramaniam S, Thukral M, Vasquez-Castro F, Dorrestein PC, Wang M Nature methods 34862502 Nat Methods 2022 Feb https://www.ncbi.nlm.nih.gov/pubmed/34862502
Quick-start infrastructure for untargeted metabolomics analysis in GNPS. Leao TF, Clark CM, Bauermeister A, Elijah EO, Gentry EC, Husband M, Oliveira MF, Bandeira N, Wang M, Dorrestein PC Nature metabolism 34244695 Nat Metab 2021 Jul https://www.ncbi.nlm.nih.gov/pubmed/34244695
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. Bandeira N, Deutsch EW, Kohlbacher O, Martens L, Vizcaíno JA Molecular & cellular proteomics : MCP 33711481 Mol Cell Proteomics 2021 https://www.ncbi.nlm.nih.gov/pubmed/33711481
Universal Spectrum Identifier for mass spectra. Deutsch EW, Perez-Riverol Y, Carver J, Kawano S, Mendoza L, Van Den Bossche T, Gabriels R, Binz PA, Pullman B, Sun Z, Shofstahl J, Bittremieux W, Mak TD, Klein J, Zhu Y, Lam H, Vizcaíno JA, Bandeira N Nature methods 34183830 Nat Methods 2021 Jul https://www.ncbi.nlm.nih.gov/pubmed/34183830
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. Jiang Y, Rex DAB, Schuster D, Neely BA, Rosano GL, Volkmar N, Momenzadeh A, Peters-Clarke TM, Egbert SB, Kreimer S, Doud EH, Crook OM, Yadav AK, Vanuopadath M, Hegeman AD, Mayta ML, Duboff AG, Riley NM, Moritz RL, Meyer JG ACS measurement science au 39193565 ACS Meas Sci Au 2024 Aug 21 https://www.ncbi.nlm.nih.gov/pubmed/39193565
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. LeDuc RD, Deutsch EW, Binz PA, Fellers RT, Cesnik AJ, Klein JA, Van Den Bossche T, Gabriels R, Yalavarthi A, Perez-Riverol Y, Carver J, Bittremieux W, Kawano S, Pullman B, Bandeira N, Kelleher NL, Thomas PM, Vizcaíno JA Journal of proteome research 35290070 J Proteome Res 2022 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/35290070
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). Lill JR, van Veelen PA, Tenzer S, Admon A, Caron E, Elias JE, Heck AJR, Marcilla M, Marino F, Müller M, Peters B, Purcell A, Sette A, Sturm T, Ternette N, Vizcaíno JA, Bassani-Sternberg M Proteomics 29791771 Proteomics 2018 Jun https://www.ncbi.nlm.nih.gov/pubmed/29791771
A tissue-based draft map of the murine MHC class I immunopeptidome. Schuster H, Shao W, Weiss T, Pedrioli PGA, Roth P, Weller M, Campbell DS, Deutsch EW, Moritz RL, Planz O, Rammensee HG, Aebersold R, Caron E Scientific data 30084848 Sci Data 2018 Aug 7 https://www.ncbi.nlm.nih.gov/pubmed/30084848
Protein Inference Using PIA Workflows and PSI Standard File Formats. Uszkoreit J, Perez-Riverol Y, Eggers B, Marcus K, Eisenacher M Journal of proteome research 30474983 J Proteome Res 2019 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/30474983
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Deutsch EW, Bandeira N, Sharma V, Perez-Riverol Y, Carver JJ, Kundu DJ, García-Seisdedos D, Jarnuczak AF, Hewapathirana S, Pullman BS, Wertz J, Sun Z, Kawano S, Okuda S, Watanabe Y, Hermjakob H, MacLean B, MacCoss MJ, Zhu Y, Ishihama Y, Vizcaíno JA Nucleic acids research 31686107 Nucleic Acids Res 2020 Jan 8 https://www.ncbi.nlm.nih.gov/pubmed/31686107
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project. Hoopmann MR, Kusebauch U, Palmblad M, Bandeira N, Shteynberg DD, He L, Xia B, Stoychev SH, Omenn GS, Weintraub ST, Moritz RL Journal of proteome research 33166149 J Proteome Res 2020 Dec 4 https://www.ncbi.nlm.nih.gov/pubmed/33166149
mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements. Bhamber RS, Jankevics A, Deutsch EW, Jones AR, Dowsey AW Journal of proteome research 32864978 J Proteome Res 2021 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/32864978
A proteomics sample metadata representation for multiomics integration and big data analysis. Dai C, Füllgrabe A, Pfeuffer J, Solovyeva EM, Deng J, Moreno P, Kamatchinathan S, Kundu DJ, George N, Fexova S, Grüning B, Föll MC, Griss J, Vaudel M, Audain E, Locard-Paulet M, Turewicz M, Eisenacher M, Uszkoreit J, Van Den Bossche T, Schwämmle V, Webel H, Schulze S, Bouyssié D, Jayaram S, Duggineni VK, Samaras P, Wilhelm M, Choi M, Wang M, Kohlbacher O, Brazma A, Papatheodorou I, Bandeira N, Deutsch EW, Vizcaíno JA, Bai M, Sachsenberg T, Levitsky LI, Perez-Riverol Y Nature communications 34615866 Nat Commun 2021 Oct 6 https://www.ncbi.nlm.nih.gov/pubmed/34615866
Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future. Jones AR, Deutsch EW, Vizcaíno JA Proteomics 36074795 Proteomics 2023 Apr https://www.ncbi.nlm.nih.gov/pubmed/36074795
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Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. Ignjatovic V, Geyer PE, Palaniappan KK, Chaaban JE, Omenn GS, Baker MS, Deutsch EW, Schwenk JM Journal of proteome research 31573204 J Proteome Res 2019 Dec 6 https://www.ncbi.nlm.nih.gov/pubmed/31573204
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format. Eng JK, Deutsch EW Proteomics 32106352 Proteomics 2020 Nov https://www.ncbi.nlm.nih.gov/pubmed/32106352
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Whole genome sequencing identifies structural variants contributing to hematologic traits in the NHLBI TOPMed program. Wheeler MM, Stilp AM, Rao S, Halldórsson BV, Beyter D, Wen J, Mihkaylova AV, McHugh CP, Lane J, Jiang MZ, Raffield LM, Jun G, Sedlazeck FJ, Metcalf G, Yao Y, Bis JB, Chami N, de Vries PS, Desai P, Floyd JS, Gao Y, Kammers K, Kim W, Moon JY, Ratan A, Yanek LR, Almasy L, Becker LC, Blangero J, Cho MH, Curran JE, Fornage M, Kaplan RC, Lewis JP, Loos RJF, Mitchell BD, Morrison AC, Preuss M, Psaty BM, Rich SS, Rotter JI, Tang H, Tracy RP, Boerwinkle E, Abecasis GR, Blackwell TW, Smith AV, Johnson AD, Mathias RA, Nickerson DA, Conomos MP, Li Y, Þorsteinsdóttir U, Magnússon MK, Stefansson K, Pankratz ND, Bauer DE, Auer PL, Reiner AP Nature communications 36481753 Nat Commun 2022 Dec 8 https://www.ncbi.nlm.nih.gov/pubmed/36481753
Investigating Gene-Diet Interactions Impacting the Association Between Macronutrient Intake and Glycemic Traits. Westerman KE, Walker ME, Gaynor SM, Wessel J, DiCorpo D, Ma J, Alonso A, Aslibekyan S, Baldridge AS, Bertoni AG, Biggs ML, Brody JA, Chen YI, Dupuis J, Goodarzi MO, Guo X, Hasbani NR, Heath A, Hidalgo B, Irvin MR, Johnson WC, Kalyani RR, Lange L, Lemaitre RN, Liu CT, Liu S, Moon JY, Nassir R, Pankow JS, Pettinger M, Raffield LM, Rasmussen-Torvik LJ, Selvin E, Senn MK, Shadyab AH, Smith AV, Smith NL, Steffen L, Talegakwar S, Taylor KD, de Vries PS, Wilson JG, Wood AC, Yanek LR, Yao J, Zheng Y, Boerwinkle E, Morrison AC, Fornage M, Russell TP, Psaty BM, Levy D, Heard-Costa NL, Ramachandran VS, Mathias RA, Arnett DK, Kaplan R, North KE, Correa A, Carson A, Rotter JI, Rich SS, Manson JE, Reiner AP, Kooperberg C, Florez JC, Meigs JB, Merino J, Tobias DK, Chen H, Manning AK Diabetes 36791419 Diabetes 2023 May 1 https://www.ncbi.nlm.nih.gov/pubmed/36791419
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Rare variants regulate expression of nearby individual genes in multiple tissues. Li J, Kong N, Han B, Sul JH PLoS genetics 34061836 PLoS Genet 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/34061836
Accurate diagnosis of atopic dermatitis by combining transcriptome and microbiota data with supervised machine learning. Jiang Z, Li J, Kong N, Kim JH, Kim BS, Lee MJ, Park YM, Lee SY, Hong SJ, Sul JH Scientific reports 34997172 Sci Rep 2022 Jan 7 https://www.ncbi.nlm.nih.gov/pubmed/34997172
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Understanding the Hidden Complexity of Latin American Population Isolates. Mooney JA, Huber CD, Service S, Sul JH, Marsden CD, Zhang Z, Sabatti C, Ruiz-Linares A, Bedoya G, Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes, Freimer N, Lohmueller KE American journal of human genetics 30401458 Am J Hum Genet 2018 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/30401458
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Analysis of Infected Host Gene Expression Reveals Repurposed Drug Candidates and Time-Dependent Host Response Dynamics for COVID-19. Xing J, Shankar R, Drelich A, Paithankar S, Chekalin E, Dexheimer T, Chua MS, Rajasekaran S, Tseng CK, Chen B bioRxiv : the preprint server for biology 32511305 bioRxiv 2020 Jun 13 https://www.ncbi.nlm.nih.gov/pubmed/32511305
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Reversal of cancer gene expression identifies repurposed drugs for diffuse intrinsic pontine glioma. Zhao G, Newbury P, Ishi Y, Chekalin E, Zeng B, Glicksberg BS, Wen A, Paithankar S, Sasaki T, Suri A, Nazarian J, Pacold ME, Brat DJ, Nicolaides T, Chen B, Hashizume R Acta neuropathologica communications 36274161 Acta Neuropathol Commun 2022 Oct 23 https://www.ncbi.nlm.nih.gov/pubmed/36274161
Published anti-SARS-CoV-2 in vitro hits share common mechanisms of action that synergize with antivirals. Xing J, Paithankar S, Liu K, Uhl K, Li X, Ko M, Kim S, Haskins J, Chen B Briefings in bioinformatics 34245241 Brief Bioinform 2021 Nov 5 https://www.ncbi.nlm.nih.gov/pubmed/34245241
Published Anti-SARS-CoV-2 In Vitro Hits Share Common Mechanisms of Action that Synergize with Antivirals. Xing J, Paithankar S, Liu K, Uhl K, Li X, Ko M, Kim S, Haskins J, Chen B bioRxiv : the preprint server for biology 33688643 bioRxiv 2021 Mar 4 https://www.ncbi.nlm.nih.gov/pubmed/33688643
A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS. McMahon M, Contreras A, Holm M, Uechi T, Forester CM, Pang X, Jackson C, Calvert ME, Chen B, Quigley DA, Luk JM, Kelley RK, Gordan JD, Gill RM, Blanchard SC, Ruggero D eLife 31478838 Elife 2019 Sep 3 https://www.ncbi.nlm.nih.gov/pubmed/31478838
Hippo Cascade Controls Lineage Commitment of Liver Tumors in Mice and Humans. Zhang S, Wang J, Wang H, Fan L, Fan B, Zeng B, Tao J, Li X, Che L, Cigliano A, Ribback S, Dombrowski F, Chen B, Cong W, Wei L, Calvisi DF, Chen X The American journal of pathology 29378174 Am J Pathol 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/29378174
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types. Yu K, Chen B, Aran D, Charalel J, Yau C, Wolf DM, van 't Veer LJ, Butte AJ, Goldstein T, Sirota M Nature communications 31395879 Nat Commun 2019 Aug 8 https://www.ncbi.nlm.nih.gov/pubmed/31395879
Publisher Correction: Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma. Chen B, Garmire L, Calvisi DF, Chua MS, Kelley RK, Chen X Nature reviews. Gastroenterology & hepatology 32161375 Nat Rev Gastroenterol Hepatol 2020 Mar 11 https://www.ncbi.nlm.nih.gov/pubmed/32161375
Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data. Liu K, Newbury PA, Glicksberg BS, Zeng WZD, Paithankar S, Andrechek ER, Chen B Nature communications 31092827 Nat Commun 2019 May 15 https://www.ncbi.nlm.nih.gov/pubmed/31092827
Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma. Chen B, Garmire L, Calvisi DF, Chua MS, Kelley RK, Chen X Nature reviews. Gastroenterology & hepatology 31900465 Nat Rev Gastroenterol Hepatol 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/31900465
Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. Taubes A, Nova P, Zalocusky KA, Kosti I, Bicak M, Zilberter MY, Hao Y, Yoon SY, Oskotsky T, Pineda S, Chen B, Aery Jones EA, Choudhary K, Grone B, Balestra ME, Chaudhry F, Paranjpe I, De Freitas J, Koutsodendris N, Chen N, Wang C, Chang W, An A, Glicksberg BS, Sirota M, Huang Y Nature aging 37117528 Nat Aging 2021 Dec https://www.ncbi.nlm.nih.gov/pubmed/37117528
OCTAD: an open workspace for virtually screening therapeutics targeting precise cancer patient groups using gene expression features. Zeng B, Glicksberg BS, Newbury P, Chekalin E, Xing J, Liu K, Wen A, Chow C, Chen B Nature protocols 33361798 Nat Protoc 2021 Feb https://www.ncbi.nlm.nih.gov/pubmed/33361798
MoCL: Data-driven Molecular Fingerprint via Knowledge-aware Contrastive Learning from Molecular Graph. Sun M, Xing J, Wang H, Chen B, Zhou J KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 35571558 KDD 2021 Aug https://www.ncbi.nlm.nih.gov/pubmed/35571558
Ibrutinib Blocks YAP1 Activation and Reverses BRAF Inhibitor Resistance in Melanoma Cells. Misek SA, Newbury PA, Chekalin E, Paithankar S, Doseff AI, Chen B, Gallo KA, Neubig RR Molecular pharmacology 34732527 Mol Pharmacol 2022 Jan https://www.ncbi.nlm.nih.gov/pubmed/34732527

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