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Program Publications

Title Authors Journal PubMedID Publication Date
Smaller total and subregional cerebellar volumes in posttraumatic stress disorder: a mega-analysis by the ENIGMA-PGC PTSD workgroup. Huggins, Ashley A; Baird, C Lexi; Briggs, Melvin; Laskowitz, Sarah; Hussain, Ahmed; Fouda, Samar; Haswell, Courtney; Sun, Delin; Salminen, Lauren E; Jahanshad, Neda; Thomopoulos, Sophia I; Veltman, Dick J; Frijling, Jessie L; Olff, Miranda; van Zuiden, Mirjam; Koch, Saskia B J; Nawjin, Laura; Wang, Li; Zhu, Ye; Li, Gen; Stein, Dan J; Ipser, Jonathan; Seedat, Soraya; du Plessis, Stefan; van den Heuvel, Leigh L; Suarez-Jimenez, Benjamin; Zhu, Xi; Kim, Yoojean; He, Xiaofu; Zilcha-Mano, Sigal; Lazarov, Amit; Neria, Yuval; Stevens, Jennifer S; Ressler, Kerry J; Jovanovic, Tanja; van Rooij, Sanne J H; Fani, Negar; Hudson, Anna R; Mueller, Sven C; Sierk, Anika; Manthey, Antje; Walter, Henrik; Daniels, Judith K; Schmahl, Christian; Herzog, Julia I; Říha, Pavel; Rektor, Ivan; Lebois, Lauren A M; Kaufman, Milissa L; Olson, Elizabeth A; Baker, Justin T; Rosso, Isabelle M; King, Anthony P; Liberzon, Isreal; Angstadt, Mike; Davenport, Nicholas D; Sponheim, Scott R; Disner, Seth G; Straube, Thomas; Hofmann, David; Qi, Rongfeng; Lu, Guang Ming; Baugh, Lee A; Forster, Gina L; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent A; Fercho, Kelene A; Maron-Katz, Adi; Etkin, Amit; Cotton, Andrew S; O'Leary, Erin N; Xie, Hong; Wang, Xin; Quidé, Yann; El-Hage, Wissam; Lissek, Shmuel; Berg, Hannah; Bruce, Steven; Cisler, Josh; Ross, Marisa; Herringa, Ryan J; Grupe, Daniel W; Nitschke, Jack B; Davidson, Richard J; Larson, Christine L; deRoon-Cassini, Terri A; Tomas, Carissa W; Fitzgerald, Jacklynn M; Blackford, Jennifer Urbano; Olatunji, Bunmi O; Kremen, William S; Lyons, Michael J; Franz, Carol E; Gordon, Evan M; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Levy, Ifat; Harpaz-Rotem, Ilan; Krystal, John H; Dennis, Emily L; Tate, David F; Cifu, David X; Walker, William C; Wilde, Elizabeth A; Harding, Ian H; Kerestes, Rebecca; Thompson, Paul M; Morey, Rajendra Molecular psychiatry 38195980 2024 Jan 10
Personalized Pangenome References. Sirén, Jouni; Eskandar, Parsa; Ungaro, Matteo Tommaso; Hickey, Glenn; Eizenga, Jordan M; Novak, Adam M; Chang, Xian; Chang, Pi-Chuan; Kolmogorov, Mikhail; Carroll, Andrew; Monlong, Jean; Paten, Benedict bioRxiv : the preprint server for biology 38168361 2023 Dec 15
Machine learning-based donor permission extraction from informed consent documents. Zhang, Meng; Sankaranarayanapillai, Madhuri; Du, Jingcheng; Xiang, Yang; Manion, Frank J; Harris, Marcelline R; Stansbury, Cooper; Pham, Huy Anh; Tao, Cui BMC bioinformatics 38102593 2023 Dec 15
Normative Modeling of Brain Morphometry Across the Lifespan Using CentileBrain: Algorithm Benchmarking and Model Optimization. Ge, Ruiyang; Yu, Yuetong; Qi, Yi Xuan; Fan, Yunan Vera; Chen, Shiyu; Gao, Chuntong; Haas, Shalaila S; Modabbernia, Amirhossein; New, Faye; Agartz, Ingrid; Asherson, Philip; Ayesa-Arriola, Rosa; Banaj, Nerisa; Banaschewski, Tobias; Baumeister, Sarah; Bertolino, Alessandro; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buckner, Randy; Buitelaar, Jan K; Cannon, Dara M; Caseras, Xavier; Cervenka, Simon; Conrod, Patricia J; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; de Haan, Liewe; de Zubicaray, Greig I; Di Giorgio, Annabella; Erk, Susanne; Fisher, Simon E; Franke, Barbara; Frodl, Thomas; Glahn, David C; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Raquel E; Gur, Ruben C; Harrison, Ben J; Hatton, Sean N; Hickie, Ian; Howells, Fleur M; Pol, Hilleke E Hulshoff; Huyser, Chaim; Jernigan, Terry L; Jiang, Jiyang; Joska, John A; Kahn, René S; Kalnin, Andrew J; Kochan, Nicole A; Koops, Sanne; Kuntsi, Jonna; Lagopoulos, Jim; Lazaro, Luisa; Lebedeva, Irina S; Lochner, Christine; Martin, Nicholas G; Mazoyer, Bernard; McDonald, Brenna C; McDonald, Colm; McMahon, Katie L; Nakao, Tomohiro; Nyberg, Lars; Piras, Fabrizio; Portella, Maria J; Qiu, Jiang; Roffman, Joshua L; Sachdev, Perminder S; Sanford, Nicole; Satterthwaite, Theodore D; Saykin, Andrew J; Schumann, Gunter; Sellgren, Carl M; Sim, Kang; Smoller, Jordan W; Soares, Jair; Sommer, Iris E; Spalletta, Gianfranco; Stein, Dan J; Tamnes, Christian K; Thomopolous, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; van 't Ent, Dennis; van den Heuvel, Odile A; van Erp, Theo Gm; van Haren, Neeltje Em; Vecchio, Daniela; Veltman, Dick J; Walter, Henrik; Wang, Yang; Weber, Bernd; Wei, Dongtao; Wen, Wei; Westlye, Lars T; Wierenga, Lara M; Williams, Steven Cr; Wright, Margaret J; Medland, Sarah; Wu, Mon-Ju; Yu, Kevin; Jahanshad, Neda; Thompson, Paul M; Frangou, Sophia bioRxiv : the preprint server for biology 38076938 2023 Dec 02
Copy-number variants and polygenic risk for intelligence confer risk for autism spectrum disorder irrespective of their effects on cognitive ability. Schmilovich, Zoe; Bourque, Vincent-Raphaël; Douard, Elise; Huguet, Guillaume; Poulain, Cécile; Ross, Jay P; Alipour, Paria; Castonguay, Charles-Étienne; Younis, Nadine; Jean-Louis, Martineau; Saci, Zohra; Pausova, Zdenka; Paus, Tomas; Schuman, Gunter; Porteous, David; Davies, Gail; Redmond, Paul; Harris, Sarah E; Deary, Ian J; Whalley, Heather; Hayward, Caroline; Dion, Patrick A; Jacquemont, Sébastien; Rouleau, Guy A medRxiv : the preprint server for health sciences 38076919 2023 Nov 29
Unravelling Robust Brain-Behavior Links of Depressive Symptoms Through Granular Network Models: Understanding Heterogeneity and Clinical Implications. Freichel, René; Lenartowicz, Agatha; Douw, Linda; Kruschwitz, Johann D; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Holz, Nathalie; Baeuchl, Christian; Smolka, Michael N; Vaidya, Nilakshi; Whelan, Robert; Frouin, Vincent; Schumann, Gunter; IMAGEN Consortium; Walter, Henrik; Blanken, Tessa F medRxiv : the preprint server for health sciences 38045393 2023 Nov 21
Examining the association between posttraumatic stress disorder and disruptions in cortical networks identified using data-driven methods. Yang, Jin; Huggins, Ashley A; Sun, Delin; Baird, C Lexi; Haswell, Courtney C; Frijling, Jessie L; Olff, Miranda; van Zuiden, Mirjam; Koch, Saskia B J; Nawijn, Laura; Veltman, Dick J; Suarez-Jimenez, Benjamin; Zhu, Xi; Neria, Yuval; Hudson, Anna R; Mueller, Sven C; Baker, Justin T; Lebois, Lauren A M; Kaufman, Milissa L; Qi, Rongfeng; Lu, Guang Ming; Říha, Pavel; Rektor, Ivan; Dennis, Emily L; Ching, Christopher R K; Thomopoulos, Sophia I; Salminen, Lauren E; Jahanshad, Neda; Thompson, Paul M; Stein, Dan J; Koopowitz, Sheri M; Ipser, Jonathan C; Seedat, Soraya; du Plessis, Stefan; van den Heuvel, Leigh L; Wang, Li; Zhu, Ye; Li, Gen; Sierk, Anika; Manthey, Antje; Walter, Henrik; Daniels, Judith K; Schmahl, Christian; Herzog, Julia I; Liberzon, Israel; King, Anthony; Angstadt, Mike; Davenport, Nicholas D; Sponheim, Scott R; Disner, Seth G; Straube, Thomas; Hofmann, David; Grupe, Daniel W; Nitschke, Jack B; Davidson, Richard J; Larson, Christine L; deRoon-Cassini, Terri A; Blackford, Jennifer U; Olatunji, Bunmi O; Gordon, Evan M; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Levy, Ifat; Harpaz-Rotem, Ilan; Krystal, John H; Morey, Rajendra A; Sotiras, Aristeidis Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 38017161 2023 Nov 28
The bidirectional effects between cognitive ability and brain morphology: A life course Mendelian randomization analysis. Korologou-Linden, Roxanna; Schuurmans, Isabel K; Cecil, Charlotte A M; White, Tonya; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Holz, Nathalie; Fröhner, Juliane H; Smolka, M; Walter, Henrik; Winterer, Jeanne; Whelan, Robert; Schumann, Gunter; Howe, Laura D; Ben-Shlomo, Yoav; Davies, Neil M; Anderson, Emma L medRxiv : the preprint server for health sciences 38014064 2023 Nov 17
A global multicohort study to map subcortical brain development and cognition in infancy and early childhood. Alex, Ann M; Aguate, Fernando; Botteron, Kelly; Buss, Claudia; Chong, Yap-Seng; Dager, Stephen R; Donald, Kirsten A; Entringer, Sonja; Fair, Damien A; Fortier, Marielle V; Gaab, Nadine; Gilmore, John H; Girault, Jessica B; Graham, Alice M; Groenewold, Nynke A; Hazlett, Heather; Lin, Weili; Meaney, Michael J; Piven, Joseph; Qiu, Anqi; Rasmussen, Jerod M; Roos, Annerine; Schultz, Robert T; Skeide, Michael A; Stein, Dan J; Styner, Martin; Thompson, Paul M; Turesky, Ted K; Wadhwa, Pathik D; Zar, Heather J; Zöllei, Lilla; de Los Campos, Gustavo; Knickmeyer, Rebecca C; ENIGMA ORIGINs group Nature neuroscience 37996530 2024 Jan
ChatGPT usage in the Reactome curation process. Tiwari, Krishna; Matthews, Lisa; May, Bruce; Shamovsky, Veronica; Orlic-Milacic, Marija; Rothfels, Karen; Ragueneau, Eliot; Gong, Chuqiao; Stephan, Ralf; Li, Nancy; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning bioRxiv : the preprint server for biology 37986970 2023 Nov 08
SillyPutty: Improved clustering by optimizing the silhouette width. Bombina, Polina; Tally, Dwayne; Abrams, Zachary B; Coombes, Kevin R bioRxiv : the preprint server for biology 37986817 2023 Nov 11
Cerebellar Volume and Disease Staging in Parkinson's Disease: An ENIGMA-PD Study. Kerestes, Rebecca; Laansma, Max A; Owens-Walton, Conor; Perry, Andrew; van Heese, Eva M; Al-Bachari, Sarah; Anderson, Tim J; Assogna, Francesca; Aventurato, Ítalo K; van Balkom, Tim D; Berendse, Henk W; van den Berg, Kevin R E; Betts, Rebecca; Brioschi, Ricardo; Carr, Jonathan; Cendes, Fernando; Clark, Lyles R; Dalrymple-Alford, John C; Dirkx, Michiel F; Druzgal, Jason; Durrant, Helena; Emsley, Hedley C A; Garraux, Gaëtan; Haroon, Hamied A; Helmich, Rick C; van den Heuvel, Odile A; João, Rafael B; Johansson, Martin E; Khachatryan, Samson G; Lochner, Christine; McMillan, Corey T; Melzer, Tracy R; Mosley, Philip E; Newman, Benjamin; Opriessnig, Peter; Parkes, Laura M; Pellicano, Clelia; Piras, Fabrizio; Pitcher, Toni L; Poston, Kathleen L; Rango, Mario; Roos, Annerine; Rummel, Christian; Schmidt, Reinhold; Schwingenschuh, Petra; Silva, Lucas S; Smith, Viktorija; Squarcina, Letizia; Stein, Dan J; Tavadyan, Zaruhi; Tsai, Chih-Chien; Vecchio, Daniela; Vriend, Chris; Wang, Jiun-Jie; Wiest, Roland; Yasuda, Clarissa L; Young, Christina B; Jahanshad, Neda; Thompson, Paul M; van der Werf, Ysbrand D; Harding, Ian H; ENIGMA-Parkinson's Study Movement disorders : official journal of the Movement Disorder Society 37964373 2023 Dec
An individualized Bayesian method for estimating genomic variants of hypertension. Rahman, Md Asad; Cai, Chunhui; Bo, Na; McNamara, Dennis M; Ding, Ying; Cooper, Gregory F; Lu, Xinghua; Liu, Jinling BMC genomics 37936055 2023 Nov 07
Heterogeneous Network Representation Learning: A Unified Framework with Survey and Benchmark. Yang, Carl; Xiao, Yuxin; Zhang, Yu; Sun, Yizhou; Han, Jiawei IEEE transactions on knowledge and data engineering 37915376 2022 Oct
Genomic Structural Equation Modeling Reveals Latent Phenotypes in the Human Cortex with Distinct Genetic Architecture. Morey, Rajendra; Zheng, Yuanchao; Sun, Delin; Garrett, Melanie; Gasperi, Marianna; Maihofer, Adam; Baird, C Lexi; Grasby, Katrina; Huggins, Ashley; Haswell, Courtney; Thompson, Paul; Medland, Sarah; Gustavson, Daniel; Panizzon, Matthew; Kremen, William; Nievergelt, Caroline; Ashley-Koch, Allison; Logue, Logue Research square 37886496 2023 Oct 03
Neuroimaging-based classification of PTSD using data-driven computational approaches: A multisite big data study from the ENIGMA-PGC PTSD consortium. Zhu, Xi; Kim, Yoojean; Ravid, Orren; He, Xiaofu; Suarez-Jimenez, Benjamin; Zilcha-Mano, Sigal; Lazarov, Amit; Lee, Seonjoo; Abdallah, Chadi G; Angstadt, Michael; Averill, Christopher L; Baird, C Lexi; Baugh, Lee A; Blackford, Jennifer U; Bomyea, Jessica; Bruce, Steven E; Bryant, Richard A; Cao, Zhihong; Choi, Kyle; Cisler, Josh; Cotton, Andrew S; Daniels, Judith K; Davenport, Nicholas D; Davidson, Richard J; DeBellis, Michael D; Dennis, Emily L; Densmore, Maria; deRoon-Cassini, Terri; Disner, Seth G; Hage, Wissam El; Etkin, Amit; Fani, Negar; Fercho, Kelene A; Fitzgerald, Jacklynn; Forster, Gina L; Frijling, Jessie L; Geuze, Elbert; Gonenc, Atilla; Gordon, Evan M; Gruber, Staci; Grupe, Daniel W; Guenette, Jeffrey P; Haswell, Courtney C; Herringa, Ryan J; Herzog, Julia; Hofmann, David Bernd; Hosseini, Bobak; Hudson, Anna R; Huggins, Ashley A; Ipser, Jonathan C; Jahanshad, Neda; Jia-Richards, Meilin; Jovanovic, Tanja; Kaufman, Milissa L; Kennis, Mitzy; King, Anthony; Kinzel, Philipp; Koch, Saskia B J; Koerte, Inga K; Koopowitz, Sheri M; Korgaonkar, Mayuresh S; Krystal, John H; Lanius, Ruth; Larson, Christine L; Lebois, Lauren A M; Li, Gen; Liberzon, Israel; Lu, Guang Ming; Luo, Yifeng; Magnotta, Vincent A; Manthey, Antje; Maron-Katz, Adi; May, Geoffery; McLaughlin, Katie; Mueller, Sven C; Nawijn, Laura; Nelson, Steven M; Neufeld, Richard W J; Nitschke, Jack B; O'Leary, Erin M; Olatunji, Bunmi O; Olff, Miranda; Peverill, Matthew; Phan, K Luan; Qi, Rongfeng; Quidé, Yann; Rektor, Ivan; Ressler, Kerry; Riha, Pavel; Ross, Marisa; Rosso, Isabelle M; Salminen, Lauren E; Sambrook, Kelly; Schmahl, Christian; Shenton, Martha E; Sheridan, Margaret; Shih, Chiahao; Sicorello, Maurizio; Sierk, Anika; Simmons, Alan N; Simons, Raluca M; Simons, Jeffrey S; Sponheim, Scott R; Stein, Murray B; Stein, Dan J; Stevens, Jennifer S; Straube, Thomas; Sun, Delin; Théberge, Jean; Thompson, Paul M; Thomopoulos, Sophia I; van der Wee, Nic J A; van der Werff, Steven J A; van Erp, Theo G M; van Rooij, Sanne J H; van Zuiden, Mirjam; Varkevisser, Tim; Veltman, Dick J; Vermeiren, Robert R J M; Walter, Henrik; Wang, Li; Wang, Xin; Weis, Carissa; Winternitz, Sherry; Xie, Hong; Zhu, Ye; Wall, Melanie; Neria, Yuval; Morey, Rajendra A NeuroImage 37858907 2023 Dec 01
Applying a Gene Reversal Rate Computational Methodology to Identify Drugs for a Rare Cancer: Inflammatory Breast Cancer. Ji, Xiaojia; Williams, Kevin P; Zheng, Weifan Cancer informatics 37846218 2023
Hemispheric asymmetry in cortical thinning reflects intrinsic organization of the neurotransmitter systems and homotopic functional connectivity. Liao, Zhijie; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Paus, Tomáš; IMAGEN Consortium Proceedings of the National Academy of Sciences of the United States of America 37831741 2023 Oct 17
Whole Genome Sequencing Based Analysis of Inflammation Biomarkers in the Trans-Omics for Precision Medicine (TOPMed) Consortium. Jiang, Min-Zhi; Gaynor, Sheila M; Li, Xihao; Van Buren, Eric; Stilp, Adrienne; Buth, Erin; Wang, Fei Fei; Manansala, Regina; Gogarten, Stephanie M; Li, Zilin; Polfus, Linda M; Salimi, Shabnam; Bis, Joshua C; Pankratz, Nathan; Yanek, Lisa R; Durda, Peter; Tracy, Russell P; Rich, Stephen S; Rotter, Jerome I; Mitchell, Braxton D; Lewis, Joshua P; Psaty, Bruce M; Pratte, Katherine A; Silverman, Edwin K; Kaplan, Robert C; Avery, Christy; North, Kari; Mathias, Rasika A; Faraday, Nauder; Lin, Honghuang; Wang, Biqi; Carson, April P; Norwood, Arnita F; Gibbs, Richard A; Kooperberg, Charles; Lundin, Jessica; Peters, Ulrike; Dupuis, Josée; Hou, Lifang; Fornage, Myriam; Benjamin, Emelia J; Reiner, Alexander P; Bowler, Russell P; Lin, Xihong; Auer, Paul L; Raffield, Laura M; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, TOPMed Inflammation Working Group bioRxiv : the preprint server for biology 37745480 2023 Sep 12
Local read haplotagging enables accurate long-read small variant calling. Kolesnikov, Alexey; Cook, Daniel; Nattestad, Maria; McNulty, Brandy; Gorzynski, John; Goenka, Sneha; Ashley, Euan A; Jain, Miten; Miga, Karen H; Paten, Benedict; Chang, Pi-Chuan; Carroll, Andrew; Shafin, Kishwar bioRxiv : the preprint server for biology 37745389 2023 Sep 12
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation. Kolmogorov, Mikhail; Billingsley, Kimberley J; Mastoras, Mira; Meredith, Melissa; Monlong, Jean; Lorig-Roach, Ryan; Asri, Mobin; Alvarez Jerez, Pilar; Malik, Laksh; Dewan, Ramita; Reed, Xylena; Genner, Rylee M; Daida, Kensuke; Behera, Sairam; Shafin, Kishwar; Pesout, Trevor; Prabakaran, Jeshuwin; Carnevali, Paolo; Yang, Jianzhi; Rhie, Arang; Scholz, Sonja W; Traynor, Bryan J; Miga, Karen H; Jain, Miten; Timp, Winston; Phillippy, Adam M; Chaisson, Mark; Sedlazeck, Fritz J; Blauwendraat, Cornelis; Paten, Benedict Nature methods 37710018 2023 Oct
Genetics of cell-type-specific post-transcriptional gene regulation during human neurogenesis. Aygün, Nil; Krupa, Oleh; Mory, Jessica; Le, Brandon; Valone, Jordan; Liang, Dan; Love, Michael I; Stein, Jason L bioRxiv : the preprint server for biology 37693528 2023 Sep 01
Beyond the Global Brain Differences: Intraindividual Variability Differences in 1q21.1 Distal and 15q11.2 BP1-BP2 Deletion Carriers. Boen, Rune; Kaufmann, Tobias; van der Meer, Dennis; Frei, Oleksandr; Agartz, Ingrid; Ames, David; Andersson, Micael; Armstrong, Nicola J; Artiges, Eric; Atkins, Joshua R; Bauer, Jochen; Benedetti, Francesco; Boomsma, Dorret I; Brodaty, Henry; Brosch, Katharina; Buckner, Randy L; Cairns, Murray J; Calhoun, Vince; Caspers, Svenja; Cichon, Sven; Corvin, Aiden P; Crespo-Facorro, Benedicto; Dannlowski, Udo; David, Friederike S; de Geus, Eco J C; de Zubicaray, Greig I; Desrivières, Sylvane; Doherty, Joanne L; Donohoe, Gary; Ehrlich, Stefan; Eising, Else; Espeseth, Thomas; Fisher, Simon E; Forstner, Andreas J; Fortaner-Uyà, Lidia; Frouin, Vincent; Fukunaga, Masaki; Ge, Tian; Glahn, David C; Goltermann, Janik; Grabe, Hans J; Green, Melissa J; Groenewold, Nynke A; Grotegerd, Dominik; Grøntvedt, Gøril Rolfseng; Hahn, Tim; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Henskens, Frans A; Holmes, Avram J; Håberg, Asta K; Haavik, Jan; Jacquemont, Sebastien; Jansen, Andreas; Jockwitz, Christiane; Jönsson, Erik G; Kikuchi, Masataka; Kircher, Tilo; Kumar, Kuldeep; Le Hellard, Stephanie; Leu, Costin; Linden, David E; Liu, Jingyu; Loughnan, Robert; Mather, Karen A; McMahon, Katie L; McRae, Allan F; Medland, Sarah E; Meinert, Susanne; Moreau, Clara A; Morris, Derek W; Mowry, Bryan J; Mühleisen, Thomas W; Nenadić, Igor; Nöthen, Markus M; Nyberg, Lars; Ophoff, Roel A; Owen, Michael J; Pantelis, Christos; Paolini, Marco; Paus, Tomas; Pausova, Zdenka; Persson, Karin; Quidé, Yann; Marques, Tiago Reis; Sachdev, Perminder S; Sando, Sigrid B; Schall, Ulrich; Scott, Rodney J; Selbæk, Geir; Shumskaya, Elena; Silva, Ana I; Sisodiya, Sanjay M; Stein, Frederike; Stein, Dan J; Straube, Benjamin; Streit, Fabian; Strike, Lachlan T; Teumer, Alexander; Teutenberg, Lea; Thalamuthu, Anbupalam; Tooney, Paul A; Tordesillas-Gutierrez, Diana; Trollor, Julian N; van 't Ent, Dennis; van den Bree, Marianne B M; van Haren, Neeltje E M; Vázquez-Bourgon, Javier; Völzke, Henry; Wen, Wei; Wittfeld, Katharina; Ching, Christopher R K; Westlye, Lars T; Thompson, Paul M; Bearden, Carrie E; Selmer, Kaja K; Alnæs, Dag; Andreassen, Ole A; Sønderby, Ida E; ENIGMA-CNV Working Group Biological psychiatry 37661008 2024 Jan 15
Evaluating Scalable Supervised Learning for Synthesize-on-Demand Chemical Libraries. Alnammi, Moayad; Liu, Shengchao; Ericksen, Spencer S; Ananiev, Gene E; Voter, Andrew F; Guo, Song; Keck, James L; Hoffmann, F Michael; Wildman, Scott A; Gitter, Anthony Journal of chemical information and modeling 37625010 2023 Sep 11
A stable and replicable neural signature of lifespan adversity in the adult brain. Holz, Nathalie E; Zabihi, Mariam; Kia, Seyed Mostafa; Monninger, Maximillian; Aggensteiner, Pascal-M; Siehl, Sebastian; Floris, Dorothea L; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Meyer-Lindenberg, Andreas; Brandeis, Daniel; Buitelaar, Jan K; Nees, Frauke; Beckmann, Christian; IMAGEN Consortium; Banaschewski, Tobias; Marquand, Andre F Nature neuroscience 37604888 2023 Sep
Association between vmPFC gray matter volume and smoking initiation in adolescents. Xiang, Shitong; Jia, Tianye; Xie, Chao; Cheng, Wei; Chaarani, Bader; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny A; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Garavan, Hugh; Schumann, Gunter; Sahakian, Barbara J; Robbins, Trevor W; Feng, Jianfeng; IMAGEN Consortium Nature communications 37582920 2023 Aug 15
Regional, circuit and network heterogeneity of brain abnormalities in psychiatric disorders. Segal, Ashlea; Parkes, Linden; Aquino, Kevin; Kia, Seyed Mostafa; Wolfers, Thomas; Franke, Barbara; Hoogman, Martine; Beckmann, Christian F; Westlye, Lars T; Andreassen, Ole A; Zalesky, Andrew; Harrison, Ben J; Davey, Christopher G; Soriano-Mas, Carles; Cardoner, Narcís; Tiego, Jeggan; Yücel, Murat; Braganza, Leah; Suo, Chao; Berk, Michael; Cotton, Sue; Bellgrove, Mark A; Marquand, Andre F; Fornito, Alex Nature neuroscience 37580620 2023 Sep
An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows. Penn, Steve; Lomax, Jane; Karlsson, Anneli; Antonucci, Vincent; Zachmann, Carl-Dieter; Kanza, Samantha; Schurer, Stephan; Turner, John Journal of biomedical semantics 37568227 2023 Aug 11
Author Correction: A shared neural basis underlying psychiatric comorbidity. Xie, Chao; Xiang, Shitong; Shen, Chun; Peng, Xuerui; Kang, Jujiao; Li, Yuzhu; Cheng, Wei; He, Shiqi; Bobou, Marina; Broulidakis, M John; van Noort, Betteke Maria; Zhang, Zuo; Robinson, Lauren; Vaidya, Nilakshi; Winterer, Jeanne; Zhang, Yuning; King, Sinead; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaître, Hervé; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Schmidt, Ulrike; Sinclair, Julia; Smolka, Michael N; Stringaris, Argyris; Walter, Henrik; Whelan, Robert; Desrivières, Sylvane; Sahakian, Barbara J; Robbins, Trevor W; Schumann, Gunter; Jia, Tianye; Feng, Jianfeng; IMAGEN Consortium; STRATIFY/ESTRA Consortium; ZIB Consortium Nature medicine 37558759 2023 Sep
Nanoporous metal-polymer composite membranes for organics separations and catalysis. Detisch, Michael J; John Balk, Thomas; Bezold, Mariah; Bhattacharyya, Dibakar Journal of materials research 37539433 2020 Oct
Bringing Micro to the Macro: How Citizen Science Data Enrich Geospatial Visualizations to Advance Health Equity. Soltani, Shamsi; Hinman, Jessica A; Blanco-Velazquez, Isela; Banchoff, Ann W; Campero, Maria I; Nelson, Lorene M; King, Abby C Journal of maps 37448978 2023
The Role of Empathy in Alcohol Use of Bullying Perpetrators and Victims: Lower Personal Empathic Distress Makes Male Perpetrators of Bullying More Vulnerable to Alcohol Use. Prignitz, Maren; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Robinson, Lauren; Smolka, Michael N; Walter, Henrik; Winterer, Jeanne M; Whelan, Robert; Schumann, Gunter; Nees, Frauke; Flor, Herta; On Behalf Of The Imagen Consortium International journal of environmental research and public health 37444132 2023 Jul 03
Subcortical Brain Alterations in Carriers of Genomic Copy Number Variants. Kumar, Kuldeep; Modenato, Claudia; Moreau, Clara; Ching, Christopher R K; Harvey, Annabelle; Martin-Brevet, Sandra; Huguet, Guillaume; Jean-Louis, Martineau; Douard, Elise; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurélie; 16p11.2 European Consortium, Simons Searchlight Consortium; Kushan, Leila; Isaev, Dmitry; Alpert, Kathryn; Ragothaman, Anjani; Turner, Jessica A; Wang, Lei; Ho, Tiffany C; Schmaal, Lianne; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Dumas, Guillaume; Draganski, Bogdan; Gutman, Boris A; Sønderby, Ida E; Andreassen, Ole A; Schultz, Laura M; Almasy, Laura; Glahn, David C; Bearden, Carrie E; Thompson, Paul M; Jacquemont, Sébastien The American journal of psychiatry 37434504 2023 Sep 01
Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. Baur, Brittany; Shin, Junha; Schreiber, Jacob; Zhang, Shilu; Zhang, Yi; Manjunath, Mohith; Song, Jun S; Stafford Noble, William; Roy, Sushmita PLoS computational biology 37428809 2023 Jul
A COMPOSITIONAL MODEL TO ASSESS EXPRESSION CHANGES FROM SINGLE-CELL RNA-SEQ DATA. Ma, Xiuyu; Korthauer, Keegan; Kendziorski, Christina; Newton, Michael A The annals of applied statistics 37332668 2021 Jun
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. Girard, Gabriel; Rafael-Patiño, Jonathan; Truffet, Raphaël; Aydogan, Dogu Baran; Adluru, Nagesh; Nair, Veena A; Prabhakaran, Vivek; Bendlin, Barbara B; Alexander, Andrew L; Bosticardo, Sara; Gabusi, Ilaria; Ocampo-Pineda, Mario; Battocchio, Matteo; Piskorova, Zuzana; Bontempi, Pietro; Schiavi, Simona; Daducci, Alessandro; Stafiej, Aleksandra; Ciupek, Dominika; Bogusz, Fabian; Pieciak, Tomasz; Frigo, Matteo; Sedlar, Sara; Deslauriers-Gauthier, Samuel; Kojčić, Ivana; Zucchelli, Mauro; Laghrissi, Hiba; Ji, Yang; Deriche, Rachid; Schilling, Kurt G; Landman, Bennett A; Cacciola, Alberto; Basile, Gianpaolo Antonio; Bertino, Salvatore; Newlin, Nancy; Kanakaraj, Praitayini; Rheault, Francois; Filipiak, Patryk; Shepherd, Timothy M; Lin, Ying-Chia; Placantonakis, Dimitris G; Boada, Fernando E; Baete, Steven H; Hernández-Gutiérrez, Erick; Ramírez-Manzanares, Alonso; Coronado-Leija, Ricardo; Stack-Sánchez, Pablo; Concha, Luis; Descoteaux, Maxime; Mansour L, Sina; Seguin, Caio; Zalesky, Andrew; Marshall, Kenji; Canales-Rodríguez, Erick J; Wu, Ye; Ahmad, Sahar; Yap, Pew-Thian; Théberge, Antoine; Gagnon, Florence; Massi, Frédéric; Fischi-Gomez, Elda; Gardier, Rémy; Haro, Juan Luis Villarreal; Pizzolato, Marco; Caruyer, Emmanuel; Thiran, Jean-Philippe NeuroImage 37330025 2023 Aug 15
Independent contribution of polygenic risk for schizophrenia and cannabis use in predicting psychotic-like experiences in young adulthood: testing gene × environment moderation and mediation. Elkrief, Laurent; Lin, Bochao; Marchi, Mattia; Afzali, Mohammad H; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Luykx, Jurjen; Boks, Marco P; Conrod, Patricia J; IMAGEN consortium Psychological medicine 37310336 2023 Apr
How Notifications Affect Engagement With a Behavior Change App: Results From a Micro-Randomized Trial. Bell, Lauren; Garnett, Claire; Bao, Yihan; Cheng, Zhaoxi; Qian, Tianchen; Perski, Olga; Potts, Henry W W; Williamson, Elizabeth JMIR mHealth and uHealth 37294612 2023 Jun 09
Inferring cell-type-specific causal gene regulatory networks during human neurogenesis. Aygün, Nil; Liang, Dan; Crouse, Wesley L; Keele, Gregory R; Love, Michael I; Stein, Jason L Genome biology 37254169 2023 May 30
Cyclic structure with cellular precision in a vertebrate sensorimotor neural circuit. Yang, Runzhe; Vishwanathan, Ashwin; Wu, Jingpeng; Kemnitz, Nico; Ih, Dodam; Turner, Nicholas; Lee, Kisuk; Tartavull, Ignacio; Silversmith, William M; Jordan, Chris S; David, Celia; Bland, Doug; Sterling, Amy; Goldman, Mark S; Aksay, Emre R F; Seung, H Sebastian; Eyewirers Current biology : CB 37236180 2023 Jun 05
AI-Assisted chemical probe discovery for the understudied Calcium-Calmodulin Dependent Kinase, PNCK. Essegian, Derek J; Chavez, Valery; Khurshid, Rabia; Merchan, Jaime R; Schürer, Stephan C PLoS computational biology 37235579 2023 May
Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research. Ahalt, Stan; Avillach, Paul; Boyles, Rebecca; Bradford, Kira; Cox, Steven; Davis-Dusenbery, Brandi; Grossman, Robert L; Krishnamurthy, Ashok; Manning, Alisa; Paten, Benedict; Philippakis, Anthony; Borecki, Ingrid; Chen, Shu Hui; Kaltman, Jon; Ladwa, Sweta; Schwartz, Chip; Thomson, Alastair; Davis, Sarah; Leaf, Alison; Lyons, Jessica; Sheets, Elizabeth; Bis, Joshua C; Conomos, Matthew; Culotti, Alessandro; Desain, Thomas; Digiovanna, Jack; Domazet, Milan; Gogarten, Stephanie; Gutierrez-Sacristan, Alba; Harris, Tim; Heavner, Ben; Jain, Deepti; O'Connor, Brian; Osborn, Kevin; Pillion, Danielle; Pleiness, Jacob; Rice, Ken; Rupp, Garrett; Serret-Larmande, Arnaud; Smith, Albert; Stedman, Jason P; Stilp, Adrienne; Barsanti, Teresa; Cheadle, John; Erdmann, Christopher; Farlow, Brandy; Gartland-Gray, Allie; Hayes, Julie; Hiles, Hannah; Kerr, Paul; Lenhardt, Chris; Madden, Tom; Mieczkowska, Joanna O; Miller, Amanda; Patton, Patrick; Rathbun, Marcie; Suber, Stephanie; Asare, Joe Journal of the American Medical Informatics Association : JAMIA 37192819 2023 May 16
A systematic review of neuroimaging epigenetic research: calling for an increased focus on development. Walton, Esther; Baltramonaityte, Vilte; Calhoun, Vince; Heijmans, Bastiaan T; Thompson, Paul M; Cecil, Charlotte A M Molecular psychiatry 37185958 2023 Jul
Pangenome graph construction from genome alignments with Minigraph-Cactus. Hickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M; Eizenga, Jordan M; Gao, Yan; Human Pangenome Reference Consortium; Marschall, Tobias; Li, Heng; Paten, Benedict Nature biotechnology 37165083 2023 May 10
Drinking motives, personality traits and life stressors-identifying pathways to harmful alcohol use in adolescence using a panel network approach. Freichel, René; Pfirrmann, Janine; Cousjin, Janna; de Jong, Peter; Franken, Ingmar; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Whelan, Robert; Schumann, Gunter; Walter, Henrik; Veer, Ilya M; Wiers, Reinout W; IMAGEN Consortium Addiction (Abingdon, England) 37157052 2023 May 08
Clinical significance and biology of circulating tumor DNA in high-risk early-stage HER2-negative breast cancer receiving neoadjuvant chemotherapy. Magbanua, Mark Jesus M; Brown Swigart, Lamorna; Ahmed, Ziad; Sayaman, Rosalyn W; Renner, Derrick; Kalashnikova, Ekaterina; Hirst, Gillian L; Yau, Christina; Wolf, Denise M; Li, Wen; Delson, Amy L; Asare, Smita; Liu, Minetta C; Albain, Kathy; Chien, A Jo; Forero-Torres, Andres; Isaacs, Claudine; Nanda, Rita; Tripathy, Debu; Rodriguez, Angel; Sethi, Himanshu; Aleshin, Alexey; Rabinowitz, Matthew; Perlmutter, Jane; Symmans, W Fraser; Yee, Douglas; Hylton, Nola M; Esserman, Laura J; DeMichele, Angela M; Rugo, Hope S; van 't Veer, Laura J Cancer cell 37146605 2023 Jun 12
Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. Taubes, Alice; Nova, Phil; Zalocusky, Kelly A; Kosti, Idit; Bicak, Mesude; Zilberter, Misha Y; Hao, Yanxia; Yoon, Seo Yeon; Oskotsky, Tomiko; Pineda, Silvia; Chen, Bin; Aery Jones, Emily A; Choudhary, Krishna; Grone, Brian; Balestra, Maureen E; Chaudhry, Fayzan; Paranjpe, Ishan; De Freitas, Jessica; Koutsodendris, Nicole; Chen, Nuo; Wang, Celine; Chang, William; An, Alice; Glicksberg, Benjamin S; Sirota, Marina; Huang, Yadong Nature aging 37117528 2021 Dec
A new method for estimating the probability of causal relationships from observational data: Application to the study of the short-term effects of air pollution on cardiovascular and respiratory disease. Andrews, Bryan; Wongchokprasitti, Chirayu; Visweswaran, Shyam; Lakhani, Chirag M; Patel, Chirag J; Cooper, Gregory F Artificial intelligence in medicine 37100513 2023 May
A shared neural basis underlying psychiatric comorbidity. Xie, Chao; Xiang, Shitong; Shen, Chun; Peng, Xuerui; Kang, Jujiao; Li, Yuzhu; Cheng, Wei; He, Shiqi; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Sahakian, Barbara J; Robbins, Trevor W; Schumann, Gunter; Jia, Tianye; Feng, Jianfeng; IMAGEN Consortium; STRATIFY Consortium; ZIB Consortium Nature medicine 37095248 2023 May
Deep learning on graphs for multi-omics classification of COPD. Zhuang, Yonghua; Xing, Fuyong; Ghosh, Debashis; Hobbs, Brian D; Hersh, Craig P; Banaei-Kashani, Farnoush; Bowler, Russell P; Kechris, Katerina PloS one 37083575 2023
Using the Reactome Database. Rothfels, Karen; Milacic, Marija; Matthews, Lisa; Haw, Robin; Sevilla, Cristoffer; Gillespie, Marc; Stephan, Ralf; Gong, Chuqiao; Ragueneau, Eliot; May, Bruce; Shamovsky, Veronica; Wright, Adam; Weiser, Joel; Beavers, Deidre; Conley, Patrick; Tiwari, Krishna; Jassal, Bijay; Griss, Johannes; Senff-Ribeiro, Andrea; Brunson, Timothy; Petryszak, Robert; Hermjakob, Henning; D'Eustachio, Peter; Wu, Guanming; Stein, Lincoln Current protocols 37053306 2023 Apr
Efficient and Precise Secure Generalized Edit Distance and Beyond. Zhu, Ruiyu; Huang, Yan IEEE transactions on dependable and secure computing 37020740 2022
Different effects of cardiometabolic syndrome on brain age in relation to gender and ethnicity. Kang, Sung Hoon; Liu, Mengting; Park, Gilsoon; Kim, Sharon Y; Lee, Hyejoo; Matloff, William; Zhao, Lu; Yoo, Heejin; Kim, Jun Pyo; Jang, Hyemin; Kim, Hee Jin; Jahanshad, Neda; Oh, Kyumgmi; Koh, Seong-Beom; Na, Duk L; Gallacher, John; Gottesman, Rebecca F; Seo, Sang Won; Kim, Hosung Alzheimer's research & therapy 36998058 2023 Mar 30
Trajectories of cortical structures associated with stress across adolescence: a bivariate latent change score approach. Nweze, Tochukwu; Banaschewski, Tobias; Ajaelu, Cyracius; Okoye, Chukwuemeka; Ezenwa, Michael; Whelan, Robert; Papadopoulos Orfanos, Dimitri; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Hanson, Jamie L; IMAGEN Consortium Journal of child psychology and psychiatry, and allied disciplines 36990655 2023 Aug
Time-resolved correlation of distributed brain activity tracks E-I balance and accounts for diverse scale-free phenomena. Nanda, Aditya; Johnson, Graham W; Mu, Yu; Ahrens, Misha B; Chang, Catie; Englot, Dario J; Breakspear, Michael; Rubinov, Mikail Cell reports 36966391 2023 Apr 25
A biologically informed polygenic score of neuronal plasticity moderates the association between cognitive aptitudes and cortical thickness in adolescents. Navarri, Xavier; Vosberg, Daniel E; Shin, Jean; Richer, Louis; Leonard, Gabriel; Pike, G Bruce; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Pausova, Zdenka; Paus, Tomáš Developmental cognitive neuroscience 36963244 2023 Apr
Direct estimation of regional lung volume change from paired and single CT images using residual regression neural network. Gerard, Sarah E; Chaudhary, Muhammad F A; Herrmann, Jacob; Christensen, Gary E; San José Estépar, Raúl; Reinhardt, Joseph M; Hoffman, Eric A Medical physics 36929883 2023 Mar 17
Genetic Modifiers of Cystic Fibrosis Lung Disease Severity: Whole-Genome Analysis of 7,840 Patients. Zhou, Yi-Hui; Gallins, Paul J; Pace, Rhonda G; Dang, Hong; Aksit, Melis A; Blue, Elizabeth E; Buckingham, Kati J; Collaco, Joseph M; Faino, Anna V; Gordon, William W; Hetrick, Kurt N; Ling, Hua; Liu, Weifang; Onchiri, Frankline M; Pagel, Kymberleigh; Pugh, Elizabeth W; Raraigh, Karen S; Rosenfeld, Margaret; Sun, Quan; Wen, Jia; Li, Yun; Corvol, Harriet; Strug, Lisa J; Bamshad, Michael J; Blackman, Scott M; Cutting, Garry R; Gibson, Ronald L; O'Neal, Wanda K; Wright, Fred A; Knowles, Michael R American journal of respiratory and critical care medicine 36921087 2023 May 15
Subcortical brain alterations in carriers of genomic copy number variants. Kumar, Kuldeep; Modenato, Claudia; Moreau, Clara; Ching, Christopher R K; Harvey, Annabelle; Martin-Brevet, Sandra; Huguet, Guillaume; Jean-Louis, Martineau; Douard, Elise; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurélie; Richetin, Sonia; 16p11.2 European Consortium, Simons Searchlight Consortium; Kushan, Leila; Isaev, Dmitry; Alpert, Kathryn; Ragothaman, Anjani; Turner, Jessica A; Wang, Lei; Ho, Tiffany C; Schmaal, Lianne; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Dumas, Guillaume; Draganski, Bogdan; Gutman, Boris A; Sønderby, Ida E; Andreassen, Ole A; Schultz, Laura; Almasy, Laura; Glahn, David C; Bearden, Carrie E; Thompson, Paul M; Jacquemont, Sébastien medRxiv : the preprint server for health sciences 36865328 2023 Feb 22
Phased nanopore assembly with Shasta and modular graph phasing with GFAse. Lorig-Roach, Ryan; Meredith, Melissa; Monlong, Jean; Jain, Miten; Olsen, Hugh; McNulty, Brandy; Porubsky, David; Montague, Tessa; Lucas, Julian; Condon, Chris; Eizenga, Jordan; Juul, Sissel; McKenzie, Sean; Simmonds, Sara E; Park, Jimin; Asri, Mobin; Koren, Sergey; Eichler, Evan; Axel, Richard; Martin, Bruce; Carnevali, Paolo; Miga, Karen; Paten, Benedict bioRxiv : the preprint server for biology 36865218 2023 Feb 22
Rare CNVs and phenome-wide profiling highlight brain structural divergence and phenotypical convergence. Kopal, Jakub; Kumar, Kuldeep; Saltoun, Karin; Modenato, Claudia; Moreau, Clara A; Martin-Brevet, Sandra; Huguet, Guillaume; Jean-Louis, Martineau; Martin, Charles-Olivier; Saci, Zohra; Younis, Nadine; Tamer, Petra; Douard, Elise; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurèlie; Richetin, Sonia; Kushan, Leila; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Draganski, Bogdan; Sønderby, Ida E; Andreassen, Ole A; Glahn, David C; Thompson, Paul M; Bearden, Carrie E; Jacquemont, Sébastien; Bzdok, Danilo Nature human behaviour 36864136 2023 Jun
Conduct problems are associated with accelerated thinning of emotion-related cortical regions in a community-based sample of adolescents. Albaugh, Matthew D; Hudziak, James J; Spechler, Philip A; Chaarani, Bader; Lepage, Claude; Jeon, Seun; Rioux, Pierre; Evans, Alan C; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh; IMAGEN Consortium Psychiatry research. Neuroimaging 36812809 2023 Apr
Genomic patterns linked to gray matter alterations underlying working memory deficits in adults and adolescents with attention-deficit/hyperactivity disorder. Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Jiang, Wenhao; Rootes-Murdy, Kelly; Schoenmacker, Gido; Silva, Rogers F; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Oosterlaan, Jaap; Hoekstra, Pieter J; Heslenfeld, Dirk; Hartman, Catharina A; Sprooten, Emma; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, Jingyu Translational psychiatry 36774336 2023 Feb 11
Optimal gap-affine alignment in O(s) space. Marco-Sola, Santiago; Eizenga, Jordan M; Guarracino, Andrea; Paten, Benedict; Garrison, Erik; Moreto, Miquel Bioinformatics (Oxford, England) 36749013 2023 Feb 03
Association of Rare Protein-Truncating DNA Variants in APOB or PCSK9 With Low-density Lipoprotein Cholesterol Level and Risk of Coronary Heart Disease. Dron, Jacqueline S; Patel, Aniruddh P; Zhang, Yiyi; Jurgens, Sean J; Maamari, Dimitri J; Wang, Minxian; Boerwinkle, Eric; Morrison, Alanna C; de Vries, Paul S; Fornage, Myriam; Hou, Lifang; Lloyd-Jones, Donald M; Psaty, Bruce M; Tracy, Russell P; Bis, Joshua C; Vasan, Ramachandran S; Levy, Daniel; Heard-Costa, Nancy; Rich, Stephen S; Guo, Xiuqing; Taylor, Kent D; Gibbs, Richard A; Rotter, Jerome I; Willer, Cristen J; Oelsner, Elizabeth C; Moran, Andrew E; Peloso, Gina M; Natarajan, Pradeep; Khera, Amit V JAMA cardiology 36723951 2023 Mar 01
Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium. Kennedy, Eamonn; Vadlamani, Shashank; Lindsey, Hannah M; Lei, Pui-Wa; Pugh, Mary Jo; Adamson, Maheen; Alda, Martin; Alonso-Lana, Silvia; Ambrogi, Sonia; Anderson, Tim J; Arango, Celso; Asarnow, Robert; Avram, Mihai; Ayesa-Arriola, Rosa; Babikian, Talin; Banaj, Nerisa; Bird, Laura J; Borgwardt, Stefan; Brodtmann, Amy; Brosch, Katharina; Caeyenberghs, Karen; Calhoun, Vince D; Chiaravalloti, Nancy D; Cifu, David X; Crespo-Facorro, Benedicto; Dalrymple-Alford, John C; Dams-O'Connor, Kristen; Dannlowski, Udo; Darby, David; Davenport, Nicholas; DeLuca, John; Diaz-Caneja, Covadonga M; Disner, Seth G; Dobryakova, Ekaterina; Ehrlich, Stefan; Esopenko, Carrie; Ferrarelli, Fabio; Frank, Lea E; Franz, Carol; Fuentes-Claramonte, Paola; Genova, Helen; Giza, Christopher C; Goltermann, Janik; Grotegerd, Dominik; Gruber, Marius; Gutierrez-Zotes, Alfonso; Ha, Minji; Haavik, Jan; Hinkin, Charles; Hoskinson, Kristen R; Hubl, Daniela; Irimia, Andrei; Jansen, Andreas; Kaess, Michael; Kang, Xiaojian; Kenney, Kimbra; Kerkova, Barbora; Khlif, Mohamed Salah; Kim, Minah; Kindler, Jochen; Kircher, Tilo; Knizkova, Karolina; Kolskar, Knut K; Krch, Denise; Kremen, William S; Kuhn, Taylor; Kumari, Veena; Kwon, Jun Soo; Langella, Roberto; Laskowitz, Sarah; Lee, Jungha; Lengenfelder, Jean; Liebel, Spencer W; Liou-Johnson, Victoria; Lippa, Sara M; Lovstad, Marianne; Lundervold, Astri J; Marotta, Cassandra; Marquardt, Craig A; Mattos, Paulo; Mayeli, Ahmad; McDonald, Carrie R; Meinert, Susanne; Melzer, Tracy R; Merchan-Naranjo, Jessica; Michel, Chantal; Morey, Rajendra A; Mwangi, Benson; Myall, Daniel J; Nenadi, Igor; Newsome, Mary R; Nunes, Abraham; O'Brien, Terence; Oertel, Viola; Ollinger, John; Olsen, Alexander; Ortiz Garcia de la Foz, Victor; Ozmen, Mustafa; Pardoe, Heath; Parent, Marise; Piras, Fabrizio; Piras, Federica; Pomarol-Clotet, Edith; Repple, Jonathan; Richard, Genevieve; Rodriguez, Jonathan; Rodriguez, Mabel; Rootes-Murdy, Kelly; Rowland, Jared; Ryan, Nicholas P; Salvador, Raymond; Sanders, Anne-Marthe; Schmidt, Andre; Soares, Jair C; Spalletta, Gianfranco; Paniel, Filip; Stasenko, Alena; Stein, Frederike; Straube, Benjamin; Thames, April; Thomas-Odenthal, Florian; Thomopoulos, Sophia I; Tone, Erin; Torres, Ivan; Troyanskaya, Maya; Turner, Jessica A; Ulrichsen, Kristine M; Umpierrez, Guillermo; Vilella, Elisabet; Vivash, Lucy; Walker, William C; Werden, Emilio; Westlye, Lars T; Wild, Krista; Wroblewski, Adrian; Wu, Mon-Ju; Wylie, Glenn R; Yatham, Lakshmi N; Zunta-Soares, Giovana B; Thompson, Paul M; Tate, David F; Hillary, Frank G; Dennis, Emily L; Wilde, Elisabeth A bioRxiv : the preprint server for biology 36712107 2023 Apr 07
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation. Kolmogorov, Mikhail; Billingsley, Kimberley J; Mastoras, Mira; Meredith, Melissa; Monlong, Jean; Lorig-Roach, Ryan; Asri, Mobin; Jerez, Pilar Alvarez; Malik, Laksh; Dewan, Ramita; Reed, Xylena; Genner, Rylee M; Daida, Kensuke; Behera, Sairam; Shafin, Kishwar; Pesout, Trevor; Prabakaran, Jeshuwin; Carnevali, Paolo; North American Brain Expression Consortium (NABEC); Yang, Jianzhi; Rhie, Arang; Scholz, Sonja W; Traynor, Bryan J; Miga, Karen H; Jain, Miten; Timp, Winston; Phillippy, Adam M; Chaisson, Mark; Sedlazeck, Fritz J; Blauwendraat, Cornelis; Paten, Benedict bioRxiv : the preprint server for biology 36711673 2023 Apr 05
Normative modeling of brain morphometry in Clinical High-Risk for Psychosis. Haas, Shalaila S; Ge, Ruiyang; Agartz, Ingrid; Amminger, G Paul; Andreassen, Ole A; Bachman, Peter; Baeza, Inmaculada; Choi, Sunah; Colibazzi, Tiziano; Cropley, Vanessa L; de la Fuente-Sandoval, Camilo; Ebdrup, Bjørn H; Fortea, Adriana; Fusar-Poli, Paolo; Glenthøj, Birte Yding; Glenthøj, Louise Birkedal; Haut, Kristen M; Hayes, Rebecca A; Heekeren, Karsten; Hooker, Christine I; Hwang, Wu Jeong; Jahanshad, Neda; Kaess, Michael; Kasai, Kiyoto; Katagiri, Naoyuki; Kim, Minah; Kindler, Jochen; Koike, Shinsuke; Kristensen, Tina D; Kwon, Jun Soo; Lawrie, Stephen M; Lee, Jimmy; Lemmers-Jansen, Imke Lj; Lin, Ashleigh; Ma, Xiaoqian; Mathalon, Daniel H; McGuire, Philip; Michel, Chantal; Mizrahi, Romina; Mizuno, Masafumi; Møller, Paul; Mora-Durán, Ricardo; Nelson, Barnaby; Nemoto, Takahiro; Nordentoft, Merete; Nordholm, Dorte; Omelchenko, Maria A; Pantelis, Christos; Pariente, Jose C; Raghava, Jayachandra M; Reyes-Madrigal, Francisco; Røssberg, Jan I; Rössler, Wulf; Salisbury, Dean F; Sasabayashi, Daiki; Schall, Ulrich; Smigielski, Lukasz; Sugranyes, Gisela; Suzuki, Michio; Takahashi, Tsutomu; Tamnes, Christian K; Theodoridou, Anastasia; Thomopoulos, Sophia I; Thompson, Paul M; Tomyshev, Alexander S; Uhlhaas, Peter J; Værnes, Tor G; van Amelsvoort, Therese Amj; van Erp, Theo Gm; Waltz, James A; Wenneberg, Christina; Westlye, Lars T; Wood, Stephen J; Zhou, Juan H; Hernaus, Dennis; Jalbrzikowski, Maria; Kahn, René S; Corcoran, Cheryl M; Frangou, Sophia; ENIGMA Clinical High Risk for Psychosis Working Group bioRxiv : the preprint server for biology 36711551 2023 Jan 18
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Rehfeldt, Tobias G; Gabriels, Ralf; Bouwmeester, Robbin; Gessulat, Siegfried; Neely, Benjamin A; Palmblad, Magnus; Perez-Riverol, Yasset; Schmidt, Tobias; Vizcaíno, Juan Antonio; Deutsch, Eric W Journal of proteome research 36693629 2023 Feb 03
Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite. Deutsch, Eric W; Mendoza, Luis; Shteynberg, David D; Hoopmann, Michael R; Sun, Zhi; Eng, Jimmy K; Moritz, Robert L Journal of proteome research 36648445 2023 Feb 03
Microstructural mapping of dentate gyrus pathology in Alzheimer's disease: A 16.4 Tesla MRI study. Shih, Nien-Chu; Kurniawan, Nyoman D; Cabeen, Ryan P; Korobkova, Laura; Wong, Ellen; Chui, Helena C; Clark, Kristi A; Miller, Carol A; Hawes, Debra; Jones, Kymry T; Sepehrband, Farshid NeuroImage. Clinical 36630864 2023
MicroRNA-eQTLs in the developing human neocortex link miR-4707-3p expression to brain size. Lafferty, Michael J; Aygün, Nil; Patel, Niyanta K; Krupa, Oleh; Liang, Dan; Wolter, Justin M; Geschwind, Daniel H; de la Torre-Ubieta, Luis; Stein, Jason L eLife 36629315 2023 Jan 11
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Deutsch, Eric W; Vizcaíno, Juan Antonio; Jones, Andrew R; Binz, Pierre-Alain; Lam, Henry; Klein, Joshua; Bittremieux, Wout; Perez-Riverol, Yasset; Tabb, David L; Walzer, Mathias; Ricard-Blum, Sylvie; Hermjakob, Henning; Neumann, Steffen; Mak, Tytus D; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Bandeira, Nuno; Carver, Jeremy; Pullman, Benjamin; Sun, Zhi; Hoffmann, Nils; Shofstahl, Jim; Zhu, Yunping; Licata, Luana; Quaglia, Federica; Tosatto, Silvio C E; Orchard, Sandra E Journal of proteome research 36626722 2023 Feb 03
Social environment and brain structure in adolescent mental health: A cross-sectional structural equation modelling study using IMAGEN data. Stepanous, Jessica; Munford, Luke; Qualter, Pamela; Banaschewski, Tobias; Nees, Frauke; Elliott, Rebecca; IMAGEN Consortium PloS one 36603003 2023
Altered lateralization of the cingulum in deployment-related traumatic brain injury: An ENIGMA military-relevant brain injury study. Dennis, Emily L; Newsome, Mary R; Lindsey, Hannah M; Adamson, Maheen; Austin, Tara A; Disner, Seth G; Eapen, Blessen C; Esopenko, Carrie; Franz, Carol E; Geuze, Elbert; Haswell, Courtney; Hinds 2nd, Sidney R; Hodges, Cooper B; Irimia, Andrei; Kenney, Kimbra; Koerte, Inga K; Kremen, William S; Levin, Harvey S; Morey, Rajendra A; Ollinger, John; Rowland, Jared A; Scheibel, Randall S; Shenton, Martha E; Sullivan, Danielle R; Talbert, Leah D; Thomopoulos, Sophia I; Troyanskaya, Maya; Walker, William C; Wang, Xin; Ware, Ashley L; Werner, John Kent; Williams, Wright; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A Human brain mapping 36583562 2023 Apr 01
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. Chen, Xueer; Chen, Lujia; Kürten, Cornelius H L; Jabbari, Fattaneh; Vujanovic, Lazar; Ding, Ying; Lu, Binfeng; Lu, Kevin; Kulkarni, Aditi; Tabib, Tracy; Lafyatis, Robert; Cooper, Gregory F; Ferris, Robert; Lu, Xinghua PLoS computational biology 36548438 2022 Dec
Vigilance associates with the low-dimensional structure of fMRI data. Zhang, Shengchao; Goodale, Sarah E; Gold, Benjamin P; Morgan, Victoria L; Englot, Dario J; Chang, Catie NeuroImage 36535323 2023 Feb 15
Right Prefrontal Cortical Thickness Is Associated With Response to Cognitive-Behavioral Therapy in Children With Obsessive-Compulsive Disorder. Bertolín, Sara; Alonso, Pino; Martínez-Zalacaín, Ignacio; Menchón, Jose M; Jimenez-Murcia, Susana; Baker, Justin T; Bargalló, Nuria; Batistuzzo, Marcelo Camargo; Boedhoe, Premika S W; Brennan, Brian P; Feusner, Jamie D; Fitzgerald, Kate D; Fontaine, Martine; Hansen, Bjarne; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Jahanshad, Neda; Jaspers-Fayer, Fern; Kuno, Masaru; Kvale, Gerd; Lazaro, Luisa; Machado-Sousa, Mafalda; Marsh, Rachel; Morgado, Pedro; Nakagawa, Akiko; Norman, Luke; Nurmi, Erika L; O'Neill, Joseph; Ortiz, Ana E; Perriello, Chris; Piacentini, John; Picó-Pérez, Maria; Shavitt, Roseli G; Shimizu, Eiji; Simpson, Helen Blair; Stewart, S Evelyn; Thomopoulos, Sophia I; Thorsen, Anders Lillevik; Walitza, Susanne; Wolters, Lidewij H; ENIGMA-OCD Working Group; Thompson, Paul M; van den Heuvel, Odile A; Stein, Dan J; Soriano-Mas, Carles Journal of the American Academy of Child and Adolescent Psychiatry 36526161 2023 Apr
STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci. Dashnow, Harriet; Pedersen, Brent S; Hiatt, Laurel; Brown, Joe; Beecroft, Sarah J; Ravenscroft, Gianina; LaCroix, Amy J; Lamont, Phillipa; Roxburgh, Richard H; Rodrigues, Miriam J; Davis, Mark; Mefford, Heather C; Laing, Nigel G; Quinlan, Aaron R Genome biology 36517892 2022 Dec 14
In vivo white matter microstructure in adolescents with early-onset psychosis: a multi-site mega-analysis. Barth, Claudia; Kelly, Sinead; Nerland, Stener; Jahanshad, Neda; Alloza, Clara; Ambrogi, Sonia; Andreassen, Ole A; Andreou, Dimitrios; Arango, Celso; Baeza, Inmaculada; Banaj, Nerisa; Bearden, Carrie E; Berk, Michael; Bohman, Hannes; Castro-Fornieles, Josefina; Chye, Yann; Crespo-Facorro, Benedicto; de la Serna, Elena; Díaz-Caneja, Covadonga M; Gurholt, Tiril P; Hegarty, Catherine E; James, Anthony; Janssen, Joost; Johannessen, Cecilie; Jönsson, Erik G; Karlsgodt, Katherine H; Kochunov, Peter; Lois, Noemi G; Lundberg, Mathias; Myhre, Anne M; Pascual-Diaz, Saül; Piras, Fabrizio; Smelror, Runar E; Spalletta, Gianfranco; Stokkan, Therese S; Sugranyes, Gisela; Suo, Chao; Thomopoulos, Sophia I; Tordesillas-Gutiérrez, Diana; Vecchio, Daniela; Wedervang-Resell, Kirsten; Wortinger, Laura A; Thompson, Paul M; Agartz, Ingrid Molecular psychiatry 36510004 2022 Dec 12
Brain ageing in schizophrenia: evidence from 26 international cohorts via the ENIGMA Schizophrenia consortium. Constantinides, Constantinos; Han, Laura K M; Alloza, Clara; Antonucci, Linda Antonella; Arango, Celso; Ayesa-Arriola, Rosa; Banaj, Nerisa; Bertolino, Alessandro; Borgwardt, Stefan; Bruggemann, Jason; Bustillo, Juan; Bykhovski, Oleg; Calhoun, Vince; Carr, Vaughan; Catts, Stanley; Chung, Young-Chul; Crespo-Facorro, Benedicto; Díaz-Caneja, Covadonga M; Donohoe, Gary; Plessis, Stefan Du; Edmond, Jesse; Ehrlich, Stefan; Emsley, Robin; Eyler, Lisa T; Fuentes-Claramonte, Paola; Georgiadis, Foivos; Green, Melissa; Guerrero-Pedraza, Amalia; Ha, Minji; Hahn, Tim; Henskens, Frans A; Holleran, Laurena; Homan, Stephanie; Homan, Philipp; Jahanshad, Neda; Janssen, Joost; Ji, Ellen; Kaiser, Stefan; Kaleda, Vasily; Kim, Minah; Kim, Woo-Sung; Kirschner, Matthias; Kochunov, Peter; Kwak, Yoo Bin; Kwon, Jun Soo; Lebedeva, Irina; Liu, Jingyu; Mitchie, Patricia; Michielse, Stijn; Mothersill, David; Mowry, Bryan; de la Foz, Víctor Ortiz-García; Pantelis, Christos; Pergola, Giulio; Piras, Fabrizio; Pomarol-Clotet, Edith; Preda, Adrian; Quidé, Yann; Rasser, Paul E; Rootes-Murdy, Kelly; Salvador, Raymond; Sangiuliano, Marina; Sarró, Salvador; Schall, Ulrich; Schmidt, André; Scott, Rodney J; Selvaggi, Pierluigi; Sim, Kang; Skoch, Antonin; Spalletta, Gianfranco; Spaniel, Filip; Thomopoulos, Sophia I; Tomecek, David; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; van Amelsvoort, Therese; Vázquez-Bourgon, Javier; Vecchio, Daniela; Voineskos, Aristotle; Weickert, Cynthia S; Weickert, Thomas; Thompson, Paul M; Schmaal, Lianne; van Erp, Theo G M; Turner, Jessica; Cole, James H; ENIGMA Schizophrenia Consortium; Dima, Danai; Walton, Esther Molecular psychiatry 36494461 2022 Dec 09
Anxiety onset in adolescents: a machine-learning prediction. Chavanne, Alice V; Paillère Martinot, Marie Laure; Penttilä, Jani; Grimmer, Yvonne; Conrod, Patricia; Stringaris, Argyris; van Noort, Betteke; Isensee, Corinna; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; Artiges, Eric; IMAGEN consortium Molecular psychiatry 36481929 2023 Feb
Cellular and molecular effects of PNCK, a non-canonical kinase target in renal cell carcinoma. Essegian, Derek J; Chavez, Valery; Bustamante, Floritza; Schürer, Stephan C; Merchan, Jaime R iScience 36465101 2022 Dec 22
Modeling the impact of data sharing on variant classification. Casaletto, James; Cline, Melissa; Shirts, Brian Journal of the American Medical Informatics Association : JAMIA 36451272 2023 Feb 16
Federated Analysis in COINSTAC Reveals Functional Network Connectivity and Spectral Links to Smoking and Alcohol Consumption in Nearly 2,000 Adolescent Brains. Gazula, Harshvardhan; Rootes-Murdy, Kelly; Holla, Bharath; Basodi, Sunitha; Zhang, Zuo; Verner, Eric; Kelly, Ross; Murthy, Pratima; Chakrabarti, Amit; Basu, Debasish; Bhagyalakshmi Nanjayya, Subodh; Lenin Singh, Rajkumar; Lourembam Singh, Roshan; Kalyanram, Kartik; Kartik, Kamakshi; Kalyanaraman, Kumaran; Ghattu, Krishnaveni; Kuriyan, Rebecca; Kurpad, Sunita Simon; Barker, Gareth J; Bharath, Rose Dawn; Desrivieres, Sylvane; Purushottam, Meera; Orfanos, Dimitri Papadopoulos; Sharma, Eesha; Hickman, Matthew; Toledano, Mireille; Vaidya, Nilakshi; Banaschewski, Tobias; Bokde, Arun L W; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillére Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Paus, Tomás; Poustka, Luise; Fröhner, Juliane H; Robinson, Lauren; Smolka, Michael N; Walter, Henrik; Winterer, Jeanne; Whelan, Robert; IMAGEN Consortium; Turner, Jessica A; Sarwate, Anand D; Plis, Sergey M; Benegal, Vivek; Schumann, Gunter; Calhoun, Vince D Neuroinformatics 36434478 2022 Nov 25
Trends in psychiatric diagnoses by COVID-19 infection and hospitalization among patients with and without recent clinical psychiatric diagnoses in New York city from March 2020 to August 2021. Xiao, Yunyu; Sharma, Mohit M; Thiruvalluru, Rohith K; Gimbrone, Catherine; Weissman, Myrna M; Olfson, Mark; Keyes, Katherine M; Pathak, Jyotishman Translational psychiatry 36414624 2022 Nov 21
Making Common Fund data more findable: catalyzing a data ecosystem. Charbonneau, Amanda L; Brady, Arthur; Czajkowski, Karl; Aluvathingal, Jain; Canchi, Saranya; Carter, Robert; Chard, Kyle; Clarke, Daniel J B; Crabtree, Jonathan; Creasy, Heather H; D'Arcy, Mike; Felix, Victor; Giglio, Michelle; Gingrich, Alicia; Harris, Rayna M; Hodges, Theresa K; Ifeonu, Olukemi; Jeon, Minji; Kropiwnicki, Eryk; Lim, Marisa C W; Liming, R Lee; Lumian, Jessica; Mahurkar, Anup A; Mandal, Meisha; Munro, James B; Nadendla, Suvarna; Richter, Rudyard; Romano, Cia; Rocca-Serra, Philippe; Schor, Michael; Schuler, Robert E; Tangmunarunkit, Hongsuda; Waldrop, Alex; Williams, Cris; Word, Karen; Sansone, Susanna-Assunta; Ma'ayan, Avi; Wagner, Rick; Foster, Ian; Kesselman, Carl; Brown, C Titus; White, Owen GigaScience 36409836 2022 Nov 21
Predictive Models for Length of Stay and Discharge Disposition in Elective Spine Surgery: Development, Validation, and Comparison to the ACS NSQIP Risk Calculator. Arora, Ayush; Lituiev, Dmytro; Jain, Deeptee; Hadley, Dexter; Butte, Atul J; Berven, Sigurd; Peterson, Thomas A Spine 36398784 2023 Jan 01
DataSifterText: Partially Synthetic Text Generation for Sensitive Clinical Notes. Zhou, Nina; Wu, Qiucheng; Wu, Zewen; Marino, Simeone; Dinov, Ivo D Journal of medical systems 36380246 2022 Nov 16
Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia. Wen, Jia; Trost, Brett; Engchuan, Worrawat; Halvorsen, Matthew; Pallotto, Linda M; Mitina, Aleksandra; Ancalade, NaEshia; Farrell, Martilias; Backstrom, Ian; Guo, Keyi; Pellecchia, Giovanna; Thiruvahindrapuram, Bhooma; Giusti-Rodriguez, Paola; Rosen, Jonathan David; Li, Yun; Won, Hyejung; Magnusson, Patrik K E; Gyllensten, Ulf; Bassett, Anne S; Hultman, Christina M; Sullivan, Patrick F; Yuen, Ryan K C; Szatkiewicz, Jin P Molecular psychiatry 36380236 2023 Jan
Genetic Heterogeneity Shapes Brain Connectivity in Psychiatry. Moreau, Clara A; Harvey, Annabelle; Kumar, Kuldeep; Huguet, Guillaume; Urchs, Sebastian G W; Douard, Elise A; Schultz, Laura M; Sharmarke, Hanad; Jizi, Khadije; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Rolland, Thomas; Martineau, Jean-Louis; Orban, Pierre; Silva, Ana Isabel; Hall, Jeremy; van den Bree, Marianne B M; Owen, Michael J; Linden, David E J; Labbe, Aurelie; Lippé, Sarah; Bearden, Carrie E; Almasy, Laura; Glahn, David C; Thompson, Paul M; Bourgeron, Thomas; Bellec, Pierre; Jacquemont, Sebastien Biological psychiatry 36372570 2023 Jan 01
The ProteomeXchange consortium at 10 years: 2023 update. Deutsch, Eric W; Bandeira, Nuno; Perez-Riverol, Yasset; Sharma, Vagisha; Carver, Jeremy J; Mendoza, Luis; Kundu, Deepti J; Wang, Shengbo; Bandla, Chakradhar; Kamatchinathan, Selvakumar; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan Antonio Nucleic acids research 36370099 2022 Nov 12
Arc controls alcohol cue relapse by a central amygdala mechanism. Pagano, Roberto; Salamian, Ahmad; Zielinski, Janusz; Beroun, Anna; Nalberczak-Skóra, Maria; Skonieczna, Edyta; Cały, Anna; Tay, Nicole; Banaschewski, Tobias; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; IMAGEN consortium; Kalita, Katarzyna; Bito, Haruhiko; Müller, Christian P; Schumann, Gunter; Okuno, Hiroyuki; Radwanska, Kasia Molecular psychiatry 36357670 2023 Feb
Complementary evolution of coding and noncoding sequence underlies mammalian hairlessness. Kowalczyk, Amanda; Chikina, Maria; Clark, Nathan eLife 36342464 2022 Nov 07
Relationships between physical activity, healthy eating and cortical thickness in children and young adults. Angelo, Brendan C; DeFendis, Alexis; Yau, Anita; Alves, Jasmin M; Thompson, Paul M; Xiang, Anny H; Page, Kathleen A; Luo, Shan Brain imaging and behavior 36319908 2022 Nov 02
The 2022 Report on the Human Proteome from the HUPO Human Proteome Project. Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Pineau, Charles; Packer, Nicolle H; Cristea, Ileana M; Lindskog, Cecilia; Weintraub, Susan T; Orchard, Sandra; Roehrl, Michael H A; Nice, Edouard; Liu, Siqi; Bandeira, Nuno; Chen, Yu-Ju; Guo, Tiannan; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W Journal of proteome research 36318223 2023 Apr 07
Evaluating and Extending the Informed Consent Ontology for Representing Permissions from the Clinical Domain. Umberfield, Elizabeth E; Stansbury, Cooper; Ford, Kathleen; Jiang, Yun; Kardia, Sharon L R; Thomer, Andrea K; Harris, Marcelline R Applied ontology 36312514 2022
Progressive Spinal Cord Degeneration in Friedreich's Ataxia: Results from ENIGMA-Ataxia. Rezende, Thiago J R; Adanyeguh, Isaac M; Arrigoni, Filippo; Bender, Benjamin; Cendes, Fernando; Corben, Louise A; Deistung, Andreas; Delatycki, Martin; Dogan, Imis; Egan, Gary F; Göricke, Sophia L; Georgiou-Karistianis, Nellie; Henry, Pierre-Gilles; Hutter, Diane; Jahanshad, Neda; Joers, James M; Lenglet, Christophe; Lindig, Tobias; Martinez, Alberto R M; Martinuzzi, Andrea; Paparella, Gabriella; Peruzzo, Denis; Reetz, Kathrin; Romanzetti, Sandro; Schöls, Ludger; Schulz, Jörg B; Synofzik, Matthis; Thomopoulos, Sophia I; Thompson, Paul M; Timmann, Dagmar; Harding, Ian H; França Jr, Marcondes C Movement disorders : official journal of the Movement Disorder Society 36308733 2022 Oct 29
Reversal of cancer gene expression identifies repurposed drugs for diffuse intrinsic pontine glioma. Zhao, Guisheng; Newbury, Patrick; Ishi, Yukitomo; Chekalin, Eugene; Zeng, Billy; Glicksberg, Benjamin S; Wen, Anita; Paithankar, Shreya; Sasaki, Takahiro; Suri, Amreena; Nazarian, Javad; Pacold, Michael E; Brat, Daniel J; Nicolaides, Theodore; Chen, Bin; Hashizume, Rintaro Acta neuropathologica communications 36274161 2022 Oct 23
Probing predilection to Crohn's disease and Crohn's disease flares: A crowd-sourced bioinformatics approach. Aljabban, Jihad; Rohr, Michael; Borkowski, Vincent J; Nemer, Mary; Cohen, Eli; Hashi, Naima; Aljabban, Hisham; Boateng, Emmanuel; Syed, Saad; Mohammed, Mohammed; Mukhtar, Ali; Hadley, Dexter; Panahiazar, Maryam Journal of pathology informatics 36268056 2022
Psychotic Like Experiences in Healthy Adolescents are Underpinned by Lower Fronto-Temporal Cortical Gyrification: a Study from the IMAGEN Consortium. Maitra, Raka; Horne, Charlotte M; O'Daly, Owen; Papanastasiou, Evangelos; Gaser, Christian; IMAGEN list of authors; IMAGEN Consortium Schizophrenia bulletin 36226895 2023 Mar 15
Decoding the transcriptome of calcified atherosclerotic plaque at single-cell resolution. Alsaigh, Tom; Evans, Doug; Frankel, David; Torkamani, Ali Communications biology 36224302 2022 Oct 12
Assessing general versus specific liability for externalizing problems in adolescence: Concurrent and prospective prediction of symptoms of conduct disorder, ADHD, and substance use. Perkins, Emily R; Joyner, Keanan J; Foell, Jens; Drislane, Laura E; Brislin, Sarah J; Frick, Paul J; Yancey, James R; Soto, Elia F; Ganley, Colleen M; Keel, Pamela K; Sica, Claudio; Flor, Herta; Nees, Frauke; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; The Imagen Consortium; Patrick, Christopher J Journal of psychopathology and clinical science 36222627 2022 Oct
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Matentzoglu, Nicolas; Goutte-Gattat, Damien; Tan, Shawn Zheng Kai; Balhoff, James P; Carbon, Seth; Caron, Anita R; Duncan, William D; Flack, Joe E; Haendel, Melissa; Harris, Nomi L; Hogan, William R; Hoyt, Charles Tapley; Jackson, Rebecca C; Kim, HyeongSik; Kir, Huseyin; Larralde, Martin; McMurry, Julie A; Overton, James A; Peters, Bjoern; Pilgrim, Clare; Stefancsik, Ray; Robb, Sofia Mc; Toro, Sabrina; Vasilevsky, Nicole A; Walls, Ramona; Mungall, Christopher J; Osumi-Sutherland, David Database : the journal of biological databases and curation 36208225 2022 Oct 08
Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis. Aksit, Melis A; Ling, Hua; Pace, Rhonda G; Raraigh, Karen S; Onchiri, Frankline; Faino, Anna V; Pagel, Kymberleigh; Pugh, Elizabeth; Stilp, Adrienne M; Sun, Quan; Blue, Elizabeth E; Wright, Fred A; Zhou, Yi-Hui; Bamshad, Michael J; Gibson, Ronald L; Knowles, Michael R; Cutting, Garry R; Blackman, Scott M; CF Genome Project American journal of human genetics 36206743 2022 Oct 06
Dissecting novel mechanisms of hepatitis B virus related hepatocellular carcinoma using meta-analysis of public data. Aljabban, Jihad; Rohr, Michael; Syed, Saad; Cohen, Eli; Hashi, Naima; Syed, Sharjeel; Khorfan, Kamal; Aljabban, Hisham; Borkowski, Vincent; Segal, Michael; Mukhtar, Mohamed; Mohammed, Mohammed; Boateng, Emmanuel; Nemer, Mary; Panahiazar, Maryam; Hadley, Dexter; Jalil, Sajid; Mumtaz, Khalid World journal of gastrointestinal oncology 36187396 2022 Sep 15
Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. Taubes, Alice; Nova, Phil; Zalocusky, Kelly A; Kosti, Idit; Bicak, Mesude; Zilberter, Misha Y; Hao, Yanxia; Yoon, Seo Yeon; Oskotsky, Tomiko; Pineda, Silvia; Chen, Bin; Jones, Emily A Aery; Choudhary, Krishna; Grone, Brian; Balestra, Maureen E; Chaudhry, Fayzan; Paranjpe, Ishan; De Freitas, Jessica; Koutsodendris, Nicole; Chen, Nuo; Wang, Celine; Chang, William; An, Alice; Glicksberg, Benjamin S; Sirota, Marina; Huang, Yadong Nature aging 36172600 2021 Oct
Multiscale neural gradients reflect transdiagnostic effects of major psychiatric conditions on cortical morphology. Park, Bo-Yong; Kebets, Valeria; Larivière, Sara; Hettwer, Meike D; Paquola, Casey; van Rooij, Daan; Buitelaar, Jan; Franke, Barbara; Hoogman, Martine; Schmaal, Lianne; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J; Andreassen, Ole A; Ching, Christopher R K; Turner, Jessica A; van Erp, Theo G M; Evans, Alan C; Dagher, Alain; Thomopoulos, Sophia I; Thompson, Paul M; Valk, Sofie L; Kirschner, Matthias; Bernhardt, Boris C Communications biology 36168040 2022 09 27
Transcriptome changes in stages of non-alcoholic fatty liver disease. Aljabban, Jihad; Rohr, Michael; Syed, Saad; Khorfan, Kamal; Borkowski, Vincent; Aljabban, Hisham; Segal, Michael; Mukhtar, Mohamed; Mohammed, Mohammed; Panahiazar, Maryam; Hadley, Dexter; Spengler, Ryan; Spengler, Erin World journal of hepatology 36158924 2022 Jul 27
Shape analysis of subcortical structures in obsessive-compulsive disorder and the relationship with comorbid anxiety, depression, and medication use: A meta-analysis by the OCD Brain Imaging Consortium. Fouche, Jean-Paul; Groenewold, Nynke A; Sevenoaks, Tatum; Heany, Sarah; Lochner, Christine; Alonso, Pino; Batistuzzo, Marcelo C; Cardoner, Narcis; Ching, Christopher R K; de Wit, Stella J; Gutman, Boris; Hoexter, Marcelo Q; Jahanshad, Neda; Kim, Minah; Kwon, Jun Soo; Mataix-Cols, David; Menchon, Jose M; Miguel, Euripedes C; Nakamae, Takashi; Phillips, Mary L; Pujol, Jesus; Sakai, Yuki; Yun, Je-Yeon; Soriano-Mas, Carles; Thompson, Paul M; Yamada, Kei; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J Brain and behavior 36106505 2022 10
Deciphering COVID-19 host transcriptomic complexity and variations for therapeutic discovery against new variants. Xing, Jing; Shankar, Rama; Ko, Meehyun; Zhang, Keke; Zhang, Sulin; Drelich, Aleksandra; Paithankar, Shreya; Chekalin, Eugene; Chua, Mei-Sze; Rajasekaran, Surender; Kent Tseng, Chien-Te; Zheng, Mingyue; Kim, Seungtaek; Chen, Bin iScience 36093376 2022 Oct 21
Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future. Jones, Andrew R; Deutsch, Eric W; Vizcaíno, Juan Antonio Proteomics 36074795 2022 Sep 08
Brain functional connectivity mirrors genetic pleiotropy in psychiatric conditions. Moreau, Clara A; Kumar, Kuldeep; Harvey, Annabelle; Huguet, Guillaume; Urchs, Sebastian G W; Schultz, Laura M; Sharmarke, Hanad; Jizi, Khadije; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Martineau, Jean-Louis; Orban, Pierre; Silva, Ana Isabel; Hall, Jeremy; van den Bree, Marianne B M; Owen, Michael J; Linden, David E J; Lippé, Sarah; Bearden, Carrie E; Almasy, Laura; Glahn, David C; Thompson, Paul M; Bourgeron, Thomas; Bellec, Pierre; Jacquemont, Sebastien Brain : a journal of neurology 36059063 2023 Apr 19
Associations of medication with subcortical morphology across the lifespan in OCD: Results from the international ENIGMA Consortium. Ivanov, Iliyan; Boedhoe, Premika S W; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Arnold, Paul D; Balachander, Srinivas; Baker, Justin T; Banaj, Nerisa; Bargalló, Nuria; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Brem, Silvia; Brennan, Brian P; Buitelaar, Jan; Calvo, Rosa; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Diniz, Juliana B; Ely, Benjamin A; Feusner, Jamie D; Ferreira, Sónia; Fitzgerald, Kate D; Fontaine, Martine; Gruner, Patricia; Hanna, Gregory L; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Ikari, Keisuke; James, Anthony; Jaspers-Fayer, Fern; Jiang, Hongyan; Kathmann, Norbert; Kaufmann, Christian; Kim, Minah; Koch, Kathrin; Kwon, Jun Soo; Lázaro, Luisa; Liu, Yanni; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Morer, Astrid; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika L; Oh, Sanghoon; Perriello, Chris; Piacentini, John C; Picó-Pérez, Maria; Piras, Fabrizio; Piras, Federica; Reddy, Y C Janardhan; Manrique, Daniela Rodriguez; Sakai, Yuki; Shimizu, Eiji; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Tolin, David F; van Rooij, Daan; Veltman, Dick J; van der Werf, Ysbrand D; van Wingen, Guido A; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; Watanabe, Anri; Wolters, Lidewij H; Xu, Xiufeng; Yun, Je-Yeon; Zarei, Mojtaba; Zhang, Fengrui; Zhao, Qing; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A; O'Neill, Joseph; ENIGMA-OCD Working Group Journal of affective disorders 36041582 2022 12 01
Structural Brain Correlates of Childhood Inhibited Temperament: An ENIGMA-Anxiety Mega-analysis. Bas-Hoogendam, Janna Marie; Bernstein, Rachel; Benson, Brenda E; Buss, Kristin A; Gunther, Kelley E; Pérez-Edgar, Koraly; Salum, Giovanni A; Jackowski, Andrea P; Bressan, Rodrigo A; Zugman, André; Degnan, Kathryn A; Filippi, Courtney A; Fox, Nathan A; Henderson, Heather A; Tang, Alva; Zeytinoglu, Selin; Harrewijn, Anita; Hillegers, Manon H J; White, Tonya; van IJzendoorn, Marinus H; Schwartz, Carl E; Felicione, Julia M; DeYoung, Kathryn A; Shackman, Alexander J; Smith, Jason F; Tillman, Rachael M; van den Berg, Yvonne H M; Cillessen, Antonius H N; Roelofs, Karin; Tyborowska, Anna; Hill, Shirley Y; Battaglia, Marco; Tettamanti, Marco; Dougherty, Lea R; Jin, Jingwen; Klein, Daniel N; Leung, Hoi-Chung; Avery, Suzanne N; Blackford, Jennifer Urbano; Clauss, Jacqueline A; Hayden, Elizabeth P; Liu, Pan; Vandermeer, Matthew R J; Goldsmith, H Hill; Planalp, Elizabeth M; Nichols, Thomas E; Thompson, Paul M; Westenberg, P Michiel; van der Wee, Nic J A; Groenewold, Nynke A; Stein, Dan J; Winkler, Anderson M; Pine, Daniel S; ENIGMA-Anxiety Working Group Journal of the American Academy of Child and Adolescent Psychiatry 36038199 2022 Sep
A Just-In-Time Adaptive intervention (JITAI) for smoking cessation: Feasibility and acceptability findings. Yang, Min-Jeong; Sutton, Steven K; Hernandez, Laura M; Jones, Sarah R; Wetter, David W; Kumar, Santosh; Vinci, Christine Addictive behaviors 36037610 2023 Jan
Sharing Begins at Home: How Continuous and Ubiquitous FAIRness Can Enhance Research Productivity and Data Reuse. Dempsey, William; Foster, Ian; Fraser, Scott; Kesselman, Carl Harvard data science review 36035065 2022
Brain Structure in Acutely Underweight and Partially Weight-Restored Individuals With Anorexia Nervosa: A Coordinated Analysis by the ENIGMA Eating Disorders Working Group. Walton, Esther; Bernardoni, Fabio; Batury, Victoria-Luise; Bahnsen, Klaas; Larivière, Sara; Abbate-Daga, Giovanni; Andres-Perpiña, Susana; Bang, Lasse; Bischoff-Grethe, Amanda; Brooks, Samantha J; Campbell, Iain C; Cascino, Giammarco; Castro-Fornieles, Josefina; Collantoni, Enrico; D'Agata, Federico; Dahmen, Brigitte; Danner, Unna N; Favaro, Angela; Feusner, Jamie D; Frank, Guido K W; Friederich, Hans-Christoph; Graner, John L; Herpertz-Dahlmann, Beate; Hess, Andreas; Horndasch, Stefanie; Kaplan, Allan S; Kaufmann, Lisa-Katrin; Kaye, Walter H; Khalsa, Sahib S; LaBar, Kevin S; Lavagnino, Luca; Lazaro, Luisa; Manara, Renzo; Miles, Amy E; Milos, Gabriella F; Monteleone, Alessio Maria; Monteleone, Palmiero; Mwangi, Benson; O'Daly, Owen; Pariente, Jose; Roesch, Julie; Schmidt, Ulrike H; Seitz, Jochen; Shott, Megan E; Simon, Joe J; Smeets, Paul A M; Tamnes, Christian K; Tenconi, Elena; Thomopoulos, Sophia I; van Elburg, Annemarie A; Voineskos, Aristotle N; von Polier, Georg G; Wierenga, Christina E; Zucker, Nancy L; Jahanshad, Neda; King, Joseph A; Thompson, Paul M; Berner, Laura A; Ehrlich, Stefan Biological psychiatry 36031441 2022 11 01
Genomic surveillance of Salmonella spp. in the Philippines during 2013-2014. Lagrada, Marietta L; Argimón, Silvia; Borlasa, Janice B; Abad, Jaywardeen P; Gayeta, June M; Masim, Melissa L; Olorosa, Agnettah M; Cohen, Victoria; Jeffrey, Benjamin; Abudahab, Khalil; Sia, Sonia B; Hufano, Charmian M; Stelling, John; Holden, Matthew T G; Aanensen, David M; Carlos, Celia C Transactions of the Royal Society of Tropical Medicine and Hygiene 35999186 2022 Dec 02
Saracatinib, a Selective Src Kinase Inhibitor, Blocks Fibrotic Responses in Preclinical Models of Pulmonary Fibrosis. Ahangari, Farida; Becker, Christine; Foster, Daniel G; Chioccioli, Maurizio; Nelson, Meghan; Beke, Keriann; Wang, Xing; Justet, Aurelien; Adams, Taylor; Readhead, Benjamin; Meador, Carly; Correll, Kelly; Lili, Loukia N; Roybal, Helen M; Rose, Kadi-Ann; Ding, Shuizi; Barnthaler, Thomas; Briones, Natalie; DeIuliis, Giuseppe; Schupp, Jonas C; Li, Qin; Omote, Norihito; Aschner, Yael; Sharma, Lokesh; Kopf, Katrina W; Magnusson, Björn; Hicks, Ryan; Backmark, Anna; Dela Cruz, Charles S; Rosas, Ivan; Cousens, Leslie P; Dudley, Joel T; Kaminski, Naftali; Downey, Gregory P American journal of respiratory and critical care medicine 35998281 2022 Dec 15
Inference of putative cell-type-specific imprinted regulatory elements and genes during human neuronal differentiation. Liang, Dan; Aygün, Nil; Matoba, Nana; Ideraabdullah, Folami Y; Love, Michael I; Stein, Jason L Human molecular genetics 35994039 2023 Jan 13
CUF-Links: Continuous and Ubiquitous FAIRness Linkages for reproducible research. Foster, Ian; Kesselman, Carl Computer 35979414 2022 Aug
GAWMerge expands GWAS sample size and diversity by combining array-based genotyping and whole-genome sequencing. Mathur, Ravi; Fang, Fang; Gaddis, Nathan; Hancock, Dana B; Cho, Michael H; Hokanson, John E; Bierut, Laura J; Lutz, Sharon M; Young, Kendra; Smith, Albert V; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Silverman, Edwin K; Page, Grier P; Johnson, Eric O Communications biology 35953715 2022 08 11
From cirrhosis to hepatocellular carcinoma: An investigation into hepatitis C viral oncogenesis. Aljabban, Jihad; Danis, Nilay; Gurakar, Merve; Khorfan, Kamal; Aljabban, Nabeal; Simsek, Cem; Salhi, Hussam; Panahiazar, Maryam; Hadley, Dexter; Gurakar, Ahmet; Saberi, Behnam Hepatology forum 35949665 2020 Jan
Local molecular and global connectomic contributions to cross-disorder cortical abnormalities. Hansen, Justine Y; Shafiei, Golia; Vogel, Jacob W; Smart, Kelly; Bearden, Carrie E; Hoogman, Martine; Franke, Barbara; van Rooij, Daan; Buitelaar, Jan; McDonald, Carrie R; Sisodiya, Sanjay M; Schmaal, Lianne; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J; van Erp, Theo G M; Ching, Christopher R K; Andreassen, Ole A; Hajek, Tomas; Opel, Nils; Modinos, Gemma; Aleman, André; van der Werf, Ysbrand; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Carson, Richard E; Dagher, Alain; Misic, Bratislav Nature communications 35948562 2022 08 10
Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis. Tetikol, H Serhat; Turgut, Deniz; Narci, Kubra; Budak, Gungor; Kalay, Ozem; Arslan, Elif; Demirkaya-Budak, Sinem; Dolgoborodov, Alexey; Kabakci-Zorlu, Duygu; Semenyuk, Vladimir; Jain, Amit; Davis-Dusenbery, Brandi N Nature communications 35927245 2022 Aug 04
Practical and Efficient in-Enclave Verification of Privacy Compliance. Liu, Weijie; Wang, Wenhao; Chen, Hongbo; Wang, XiaoFeng; Lu, Yaosong; Chen, Kai; Wang, Xinyu; Shen, Qintao; Chen, Yi; Tang, Haixu Proceedings. International Conference on Dependable Systems and Networks 35919377 2021 Jun
A comparison of methods to harmonize cortical thickness measurements across scanners and sites. Sun, Delin; Rakesh, Gopalkumar; Haswell, Courtney C; Logue, Mark; Baird, C Lexi; O'Leary, Erin N; Cotton, Andrew S; Xie, Hong; Tamburrino, Marijo; Chen, Tian; Dennis, Emily L; Jahanshad, Neda; Salminen, Lauren E; Thomopoulos, Sophia I; Rashid, Faisal; Ching, Christopher R K; Koch, Saskia B J; Frijling, Jessie L; Nawijn, Laura; van Zuiden, Mirjam; Zhu, Xi; Suarez-Jimenez, Benjamin; Sierk, Anika; Walter, Henrik; Manthey, Antje; Stevens, Jennifer S; Fani, Negar; van Rooij, Sanne J H; Stein, Murray; Bomyea, Jessica; Koerte, Inga K; Choi, Kyle; van der Werff, Steven J A; Vermeiren, Robert R J M; Herzog, Julia; Lebois, Lauren A M; Baker, Justin T; Olson, Elizabeth A; Straube, Thomas; Korgaonkar, Mayuresh S; Andrew, Elpiniki; Zhu, Ye; Li, Gen; Ipser, Jonathan; Hudson, Anna R; Peverill, Matthew; Sambrook, Kelly; Gordon, Evan; Baugh, Lee; Forster, Gina; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent; Maron-Katz, Adi; du Plessis, Stefan; Disner, Seth G; Davenport, Nicholas; Grupe, Daniel W; Nitschke, Jack B; deRoon-Cassini, Terri A; Fitzgerald, Jacklynn M; Krystal, John H; Levy, Ifat; Olff, Miranda; Veltman, Dick J; Wang, Li; Neria, Yuval; De Bellis, Michael D; Jovanovic, Tanja; Daniels, Judith K; Shenton, Martha; van de Wee, Nic J A; Schmahl, Christian; Kaufman, Milissa L; Rosso, Isabelle M; Sponheim, Scott R; Hofmann, David Bernd; Bryant, Richard A; Fercho, Kelene A; Stein, Dan J; Mueller, Sven C; Hosseini, Bobak; Phan, K Luan; McLaughlin, Katie A; Davidson, Richard J; Larson, Christine L; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Gomaa, Hassaan; Etkin, Amit; Seedat, Soraya; Harpaz-Rotem, Ilan; Liberzon, Israel; van Erp, Theo G M; Quidé, Yann; Wang, Xin; Thompson, Paul M; Morey, Rajendra A NeuroImage 35917919 2022 11 01
Correlation Analysis of Variables From the Atherosclerosis Risk in Communities Study. Mandal, Meisha; Levy, Josh; Ives, Cataia; Hwang, Stephen; Zhou, Yi-Hui; Motsinger-Reif, Alison; Pan, Huaqin; Huggins, Wayne; Hamilton, Carol; Wright, Fred; Edwards, Stephen Frontiers in pharmacology 35899108 2022
Longitudinal trajectories of cortical development in 22q11.2 copy number variants and typically developing controls. Jalbrzikowski, Maria; Lin, Amy; Vajdi, Ariana; Grigoryan, Vardui; Kushan, Leila; Ching, Christopher R K; Schleifer, Charles; Hayes, Rebecca A; Chu, Stephanie A; Sugar, Catherine A; Forsyth, Jennifer K; Bearden, Carrie E Molecular psychiatry 35896619 2022 Oct
Structural network alterations in focal and generalized epilepsy assessed in a worldwide ENIGMA study follow axes of epilepsy risk gene expression. Larivière, Sara; Royer, Jessica; Rodríguez-Cruces, Raúl; Paquola, Casey; Caligiuri, Maria Eugenia; Gambardella, Antonio; Concha, Luis; Keller, Simon S; Cendes, Fernando; Yasuda, Clarissa L; Bonilha, Leonardo; Gleichgerrcht, Ezequiel; Focke, Niels K; Domin, Martin; von Podewills, Felix; Langner, Soenke; Rummel, Christian; Wiest, Roland; Martin, Pascal; Kotikalapudi, Raviteja; O'Brien, Terence J; Sinclair, Benjamin; Vivash, Lucy; Desmond, Patricia M; Lui, Elaine; Vaudano, Anna Elisabetta; Meletti, Stefano; Tondelli, Manuela; Alhusaini, Saud; Doherty, Colin P; Cavalleri, Gianpiero L; Delanty, Norman; Kälviäinen, Reetta; Jackson, Graeme D; Kowalczyk, Magdalena; Mascalchi, Mario; Semmelroch, Mira; Thomas, Rhys H; Soltanian-Zadeh, Hamid; Davoodi-Bojd, Esmaeil; Zhang, Junsong; Winston, Gavin P; Griffin, Aoife; Singh, Aditi; Tiwari, Vijay K; Kreilkamp, Barbara A K; Lenge, Matteo; Guerrini, Renzo; Hamandi, Khalid; Foley, Sonya; Rüber, Theodor; Weber, Bernd; Depondt, Chantal; Absil, Julie; Carr, Sarah J A; Abela, Eugenio; Richardson, Mark P; Devinsky, Orrin; Severino, Mariasavina; Striano, Pasquale; Tortora, Domenico; Kaestner, Erik; Hatton, Sean N; Vos, Sjoerd B; Caciagli, Lorenzo; Duncan, John S; Whelan, Christopher D; Thompson, Paul M; Sisodiya, Sanjay M; Bernasconi, Andrea; Labate, Angelo; McDonald, Carrie R; Bernasconi, Neda; Bernhardt, Boris C Nature communications 35896547 2022 07 27
Neuroanatomical heterogeneity and homogeneity in individuals at clinical high risk for psychosis. Baldwin, Helen; Radua, Joaquim; Antoniades, Mathilde; Haas, Shalaila S; Frangou, Sophia; Agartz, Ingrid; Allen, Paul; Andreassen, Ole A; Atkinson, Kimberley; Bachman, Peter; Baeza, Inmaculada; Bartholomeusz, Cali F; Chee, Michael W L; Colibazzi, Tiziano; Cooper, Rebecca E; Corcoran, Cheryl M; Cropley, Vanessa L; Ebdrup, Bjørn H; Fortea, Adriana; Glenthøj, Louise Birkedal; Hamilton, Holly K; Haut, Kristen M; Hayes, Rebecca A; He, Ying; Heekeren, Karsten; Kaess, Michael; Kasai, Kiyoto; Katagiri, Naoyuki; Kim, Minah; Kindler, Jochen; Klaunig, Mallory J; Koike, Shinsuke; Koppel, Alex; Kristensen, Tina D; Bin Kwak, Yoo; Kwon, Jun Soo; Lawrie, Stephen M; Lebedeva, Irina; Lee, Jimmy; Lin, Ashleigh; Loewy, Rachel L; Mathalon, Daniel H; Michel, Chantal; Mizrahi, Romina; Møller, Paul; Nelson, Barnaby; Nemoto, Takahiro; Nordholm, Dorte; Omelchenko, Maria A; Pantelis, Christos; Raghava, Jayachandra M; Røssberg, Jan I; Rössler, Wulf; Salisbury, Dean F; Sasabayashi, Daiki; Schall, Ulrich; Smigielski, Lukasz; Sugranyes, Gisela; Suzuki, Michio; Takahashi, Tsutomu; Tamnes, Christian K; Tang, Jinsong; Theodoridou, Anastasia; Thomopoulos, Sophia I; Tomyshev, Alexander S; Uhlhaas, Peter J; Værnes, Tor G; van Amelsvoort, Therese A M J; Van Erp, Theo G M; Waltz, James A; Westlye, Lars T; Wood, Stephen J; Zhou, Juan H; McGuire, Philip; Thompson, Paul M; Jalbrzikowski, Maria; Hernaus, Dennis; Fusar-Poli, Paolo; ENIGMA Clinical High Risk for Psychosis Working Group Translational psychiatry 35882855 2022 07 26
Getting Started with LINCS Datasets and Tools. Xie, Zhuorui; Kropiwnicki, Eryk; Wojciechowicz, Megan L; Jagodnik, Kathleen M; Shu, Ingrid; Bailey, Allison; Clarke, Daniel J B; Jeon, Minji; Evangelista, John Erol; V Kuleshov, Maxim; Lachmann, Alexander; Parigi, Abhijna A; Sanchez, Jose M; Jenkins, Sherry L; Ma'ayan, Avi Current protocols 35876555 2022 Jul
Standardized annotation of translated open reading frames. Mudge, Jonathan M; Ruiz-Orera, Jorge; Prensner, John R; Brunet, Marie A; Calvet, Ferriol; Jungreis, Irwin; Gonzalez, Jose Manuel; Magrane, Michele; Martinez, Thomas F; Schulz, Jana Felicitas; Yang, Yucheng T; Albà, M Mar; Aspden, Julie L; Baranov, Pavel V; Bazzini, Ariel A; Bruford, Elspeth; Martin, Maria Jesus; Calviello, Lorenzo; Carvunis, Anne-Ruxandra; Chen, Jin; Couso, Juan Pablo; Deutsch, Eric W; Flicek, Paul; Frankish, Adam; Gerstein, Mark; Hubner, Norbert; Ingolia, Nicholas T; Kellis, Manolis; Menschaert, Gerben; Moritz, Robert L; Ohler, Uwe; Roucou, Xavier; Saghatelian, Alan; Weissman, Jonathan S; van Heesch, Sebastiaan Nature biotechnology 35831657 2022 Jul
Harmonizing PTSD severity scales across instruments and sites. Kennedy, Eamonn; Dennis, Emily L; Lindsey, Hannah M; deRoon-Cassini, Terri; Du Plessis, Stefan; Fani, Negar; Kaufman, Milissa L; Koen, Nastassja; Larson, Christine L; Laskowitz, Sarah; Lebois, Lauren A M; Morey, Rajendra A; Newsome, Mary R; Palermo, Cori; Pastorek, Nicholas J; Powers, Abigail; Scheibel, Randall; Seedat, Soraya; Seligowski, Antonia; Stein, Dan J; Stevens, Jennifer; Sun, Delin; Thompson, Paul; Troyanskaya, Maya; van Rooij, Sanne J H; Watts, Amanda A; Tomas, Carissa W; Williams, Wright; Hillary, Frank G; Pugh, Mary Jo; Wilde, Elisabeth A; Tate, David F Neuropsychology 35797175 2022 Jul 07
Biomedical Literature Mining for Repurposing Laboratory Tests. Kuusisto, Finn; Kleiman, Ross; Weiss, Jeremy Methods in molecular biology (Clifton, N.J.) 35713860 2022
The GA4GH Phenopacket schema defines a computable representation of clinical data. Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; Callahan, Tiffany J; Chute, Christopher G; Courtot, Mélanie; Danis, Daniel; Elemento, Olivier; Essenwanger, Andrea; Freimuth, Robert R; Gargano, Michael A; Groza, Tudor; Hamosh, Ada; Harris, Nomi L; Kaliyaperumal, Rajaram; Lloyd, Kevin C Kent; Khalifa, Aly; Krawitz, Peter M; Köhler, Sebastian; Laraway, Brian J; Lehväslaiho, Heikki; Matalonga, Leslie; McMurry, Julie A; Metke-Jimenez, Alejandro; Mungall, Christopher J; Munoz-Torres, Monica C; Ogishima, Soichi; Papakonstantinou, Anastasios; Piscia, Davide; Pontikos, Nikolas; Queralt-Rosinach, Núria; Roos, Marco; Sass, Julian; Schofield, Paul N; Seelow, Dominik; Siapos, Anastasios; Smedley, Damian; Smith, Lindsay D; Steinhaus, Robin; Sundaramurthi, Jagadish Chandrabose; Swietlik, Emilia M; Thun, Sylvia; Vasilevsky, Nicole A; Wagner, Alex H; Warner, Jeremy L; Weiland, Claus; GAGH Phenopacket Modeling Consortium; Haendel, Melissa A; Robinson, Peter N Nature biotechnology 35705716 2022 Jun
Data Analytics of Electronic Health Records to Enhance Care of Coronary Artery Disease in Younger Women with Avoiding Possible Delay in Treatment. Panahiazar, Maryam; Bishara, Andrew M; Chern, Yorick; Alizadehsani, Roohallah; Latif, Omar S; Hadley, Dexter; Beygui, Ramin E Studies in health technology and informatics 35673215 2022 Jun 06
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. Ramsbottom, Kerry A; Prakash, Ananth; Riverol, Yasset Perez; Camacho, Oscar Martin; Martin, Maria-Jesus; Vizcaíno, Juan Antonio; Deutsch, Eric W; Jones, Andrew R Journal of proteome research 35640880 2022 Jul 01
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. Maffei, Chiara; Girard, Gabriel; Schilling, Kurt G; Aydogan, Dogu Baran; Adluru, Nagesh; Zhylka, Andrey; Wu, Ye; Mancini, Matteo; Hamamci, Andac; Sarica, Alessia; Teillac, Achille; Baete, Steven H; Karimi, Davood; Yeh, Fang-Cheng; Yildiz, Mert E; Gholipour, Ali; Bihan-Poudec, Yann; Hiba, Bassem; Quattrone, Andrea; Quattrone, Aldo; Boshkovski, Tommy; Stikov, Nikola; Yap, Pew-Thian; de Luca, Alberto; Pluim, Josien; Leemans, Alexander; Prabhakaran, Vivek; Bendlin, Barbara B; Alexander, Andrew L; Landman, Bennett A; Canales-Rodríguez, Erick J; Barakovic, Muhamed; Rafael-Patino, Jonathan; Yu, Thomas; Rensonnet, Gaëtan; Schiavi, Simona; Daducci, Alessandro; Pizzolato, Marco; Fischi-Gomez, Elda; Thiran, Jean-Philippe; Dai, George; Grisot, Giorgia; Lazovski, Nikola; Puch, Santi; Ramos, Marc; Rodrigues, Paulo; Prčkovska, Vesna; Jones, Robert; Lehman, Julia; Haber, Suzanne N; Yendiki, Anastasia NeuroImage 35636227 2022 08 15
Redefining breast cancer subtypes to guide treatment prioritization and maximize response: Predictive biomarkers across 10 cancer therapies. Wolf, Denise M; Yau, Christina; Wulfkuhle, Julia; Brown-Swigart, Lamorna; Gallagher, Rosa I; Lee, Pei Rong Evelyn; Zhu, Zelos; Magbanua, Mark J; Sayaman, Rosalyn; O'Grady, Nicholas; Basu, Amrita; Delson, Amy; Coppé, Jean Philippe; Lu, Ruixiao; Braun, Jerome; I-SPY2 Investigators; Asare, Smita M; Sit, Laura; Matthews, Jeffrey B; Perlmutter, Jane; Hylton, Nola; Liu, Minetta C; Pohlmann, Paula; Symmans, W Fraser; Rugo, Hope S; Isaacs, Claudine; DeMichele, Angela M; Yee, Douglas; Berry, Donald A; Pusztai, Lajos; Petricoin, Emanuel F; Hirst, Gillian L; Esserman, Laura J; van 't Veer, Laura J Cancer cell 35623341 2022 06 13
Defining mitochondrial protein functions through deep multiomic profiling. Rensvold, Jarred W; Shishkova, Evgenia; Sverchkov, Yuriy; Miller, Ian J; Cetinkaya, Arda; Pyle, Angela; Manicki, Mateusz; Brademan, Dain R; Alanay, Yasemin; Raiman, Julian; Jochem, Adam; Hutchins, Paul D; Peters, Sean R; Linke, Vanessa; Overmyer, Katherine A; Salome, Austin Z; Hebert, Alexander S; Vincent, Catherine E; Kwiecien, Nicholas W; Rush, Matthew J P; Westphall, Michael S; Craven, Mark; Akarsu, Nurten A; Taylor, Robert W; Coon, Joshua J; Pagliarini, David J Nature 35614220 2022 06
Data Analytics of Electronic Medical Record to Study Racial Diversities in Cardiovascular Diagnosis and Treatment. Panahiazar, Maryam; Chern, Yorick; Riojas, Ramon; Latif, Omar S; Hadley, Dexter; Beygui, Ramin E Studies in health technology and informatics 35612140 2022 May 25
An Ontology for Cardiothoracic Surgical Education and Clinical Data Analytics. Panahiazar, Maryam; Chern, Yorick; Riojas, Ramon; Latif, Omar S; Lokala, Usha; Hadley, Dexter; Sheth, Amit; Beygui, Ramin E Studies in health technology and informatics 35612107 2022 May 25
Prediction of future healthcare expenses of patients from chest radiographs using deep learning: a pilot study. Sohn, Jae Ho; Chen, Yixin; Lituiev, Dmytro; Yang, Jaewon; Ordovas, Karen; Hadley, Dexter; Vu, Thienkhai H; Franc, Benjamin L; Seo, Youngho Scientific reports 35585177 2022 May 18
Longitudinal Trajectory of the Link Between Ventral Striatum and Depression in Adolescence. Pan, Pedro Mario; Sato, João R; Paillère Martinot, Marie-Laure; Martinot, Jean-Luc; Artiges, Eric; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Ittermann, Bernd; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Whelan, Robert; Schumann, Gunter; Westwater, Margaret L; Grillon, Christian; Cogo-Moreira, Hugo; Stringaris, Argyris; Ernst, Monique; IMAGEN Consortium The American journal of psychiatry 35582783 2022 07
MoCL: Data-driven Molecular Fingerprint via Knowledge-aware Contrastive Learning from Molecular Graph. Sun, Mengying; Xing, Jing; Wang, Huijun; Chen, Bin; Zhou, Jiayu KDD : proceedings. International Conference on Knowledge Discovery & Data Mining 35571558 2021 Aug
BD2K Training Coordinating Center's ERuDIte: the Educational Resource Discovery Index for Data Science. Ambite, José Luis; Fierro, Lily; Gordon, Jonathan; Burns, Gully A; Geigl, Florian; Lerman, Kristina; Van Horn, John D IEEE transactions on emerging topics in computing 35548703 2021 Jan-Mar
Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation. Kalyuzhnyy, Anton; Eyers, Patrick A; Eyers, Claire E; Bowler-Barnett, Emily; Martin, Maria J; Sun, Zhi; Deutsch, Eric W; Jones, Andrew R Journal of proteome research 35532924 2022 06 03
Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed. Taub, Margaret A; Conomos, Matthew P; Keener, Rebecca; Iyer, Kruthika R; Weinstock, Joshua S; Yanek, Lisa R; Lane, John; Miller-Fleming, Tyne W; Brody, Jennifer A; Raffield, Laura M; McHugh, Caitlin P; Jain, Deepti; Gogarten, Stephanie M; Laurie, Cecelia A; Keramati, Ali; Arvanitis, Marios; Smith, Albert V; Heavner, Benjamin; Barwick, Lucas; Becker, Lewis C; Bis, Joshua C; Blangero, John; Bleecker, Eugene R; Burchard, Esteban G; Celedón, Juan C; Chang, Yen Pei C; Custer, Brian; Darbar, Dawood; de Las Fuentes, Lisa; DeMeo, Dawn L; Freedman, Barry I; Garrett, Melanie E; Gladwin, Mark T; Heckbert, Susan R; Hidalgo, Bertha A; Irvin, Marguerite R; Islam, Talat; Johnson, W Craig; Kaab, Stefan; Launer, Lenore; Lee, Jiwon; Liu, Simin; Moscati, Arden; North, Kari E; Peyser, Patricia A; Rafaels, Nicholas; Seidman, Christine; Weeks, Daniel E; Wen, Fayun; Wheeler, Marsha M; Williams, L Keoki; Yang, Ivana V; Zhao, Wei; Aslibekyan, Stella; Auer, Paul L; Bowden, Donald W; Cade, Brian E; Chen, Zhanghua; Cho, Michael H; Cupples, L Adrienne; Curran, Joanne E; Daya, Michelle; Deka, Ranjan; Eng, Celeste; Fingerlin, Tasha E; Guo, Xiuqing; Hou, Lifang; Hwang, Shih-Jen; Johnsen, Jill M; Kenny, Eimear E; Levin, Albert M; Liu, Chunyu; Minster, Ryan L; Naseri, Take; Nouraie, Mehdi; Reupena, Muagututi'a Sefuiva; Sabino, Ester C; Smith, Jennifer A; Smith, Nicholas L; Su, Jessica Lasky; Taylor, James G; Telen, Marilyn J; Tiwari, Hemant K; Tracy, Russell P; White, Marquitta J; Zhang, Yingze; Wiggins, Kerri L; Weiss, Scott T; Vasan, Ramachandran S; Taylor, Kent D; Sinner, Moritz F; Silverman, Edwin K; Shoemaker, M Benjamin; Sheu, Wayne H-H; Sciurba, Frank; Schwartz, David A; Rotter, Jerome I; Roden, Daniel; Redline, Susan; Raby, Benjamin A; Psaty, Bruce M; Peralta, Juan M; Palmer, Nicholette D; Nekhai, Sergei; Montgomery, Courtney G; Mitchell, Braxton D; Meyers, Deborah A; McGarvey, Stephen T; NHLBI CARE Network; Mak, Angel Cy; Loos, Ruth Jf; Kumar, Rajesh; Kooperberg, Charles; Konkle, Barbara A; Kelly, Shannon; Kardia, Sharon Lr; Kaplan, Robert; He, Jiang; Gui, Hongsheng; Gilliland, Frank D; Gelb, Bruce D; Fornage, Myriam; Ellinor, Patrick T; de Andrade, Mariza; Correa, Adolfo; Chen, Yii-Der Ida; Boerwinkle, Eric; Barnes, Kathleen C; Ashley-Koch, Allison E; Arnett, Donna K; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Hematology and Hemostasis Working Group; TOPMed Structural Variation Working Group; Laurie, Cathy C; Abecasis, Goncalo; Nickerson, Deborah A; Wilson, James G; Rich, Stephen S; Levy, Daniel; Ruczinski, Ingo; Aviv, Abraham; Blackwell, Thomas W; Thornton, Timothy; O'Connell, Jeff; Cox, Nancy J; Perry, James A; Armanios, Mary; Battle, Alexis; Pankratz, Nathan; Reiner, Alexander P; Mathias, Rasika A Cell genomics 35530816 2022 Jan 12
Bayesian causal network modeling suggests adolescent cannabis use accelerates prefrontal cortical thinning. Owens, Max M; Albaugh, Matthew D; Allgaier, Nicholas; Yuan, Dekang; Robert, Gabriel; Cupertino, Renata B; Spechler, Philip A; Juliano, Anthony; Hahn, Sage; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Mackey, Scott; Schumann, Gunter; Garavan, Hugh; IMAGEN Consortium Translational psychiatry 35523763 2022 05 06
Combined Hypothesis Testing on Graphs with Applications to Gene Set Enrichment Analysis. Wang, Shulei; Yuan, Ming Journal of the American Statistical Association 35431372 2019
A model-based approach to assess reproducibility for large-scale high-throughput MRI-based studies. Jiao, Zeyu; Lai, Yinglei; Kang, Jujiao; Gong, Weikang; Ma, Liang; Jia, Tianye; Xie, Chao; Xiang, Shitong; Cheng, Wei; Heinz, Andreas; Desrivières, Sylvane; Schumann, Gunter; IMAGEN Consortium; Sun, Fengzhu; Feng, Jianfeng NeuroImage 35398282 2022 07 15
Differentiable Optimization of Generalized Nondecomposable Functions using Linear Programs. Meng, Zihang; Mukherjee, Lopamudra; Wu, Yichao; Singh, Vikas; Ravi, Sathya N Advances in neural information processing systems 35387382 2021 Dec
Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling. Bailey, Andrew D; Talkish, Jason; Ding, Hongxu; Igel, Haller; Duran, Alejandra; Mantripragada, Shreya; Paten, Benedict; Ares, Manuel eLife 35384842 2022 Apr 06
Genetic variants associated with longitudinal changes in brain structure across the lifespan. Brouwer, Rachel M; Klein, Marieke; Grasby, Katrina L; Schnack, Hugo G; Jahanshad, Neda; Teeuw, Jalmar; Thomopoulos, Sophia I; Sprooten, Emma; Franz, Carol E; Gogtay, Nitin; Kremen, William S; Panizzon, Matthew S; Olde Loohuis, Loes M; Whelan, Christopher D; Aghajani, Moji; Alloza, Clara; Alnæs, Dag; Artiges, Eric; Ayesa-Arriola, Rosa; Barker, Gareth J; Bastin, Mark E; Blok, Elisabet; Bøen, Erlend; Breukelaar, Isabella A; Bright, Joanna K; Buimer, Elizabeth E L; Bülow, Robin; Cannon, Dara M; Ciufolini, Simone; Crossley, Nicolas A; Damatac, Christienne G; Dazzan, Paola; de Mol, Casper L; de Zwarte, Sonja M C; Desrivières, Sylvane; Díaz-Caneja, Covadonga M; Doan, Nhat Trung; Dohm, Katharina; Fröhner, Juliane H; Goltermann, Janik; Grigis, Antoine; Grotegerd, Dominik; Han, Laura K M; Harris, Mathew A; Hartman, Catharina A; Heany, Sarah J; Heindel, Walter; Heslenfeld, Dirk J; Hohmann, Sarah; Ittermann, Bernd; Jansen, Philip R; Janssen, Joost; Jia, Tianye; Jiang, Jiyang; Jockwitz, Christiane; Karali, Temmuz; Keeser, Daniel; Koevoets, Martijn G J C; Lenroot, Rhoshel K; Malchow, Berend; Mandl, René C W; Medel, Vicente; Meinert, Susanne; Morgan, Catherine A; Mühleisen, Thomas W; Nabulsi, Leila; Opel, Nils; de la Foz, Víctor Ortiz-García; Overs, Bronwyn J; Paillère Martinot, Marie-Laure; Redlich, Ronny; Marques, Tiago Reis; Repple, Jonathan; Roberts, Gloria; Roshchupkin, Gennady V; Setiaman, Nikita; Shumskaya, Elena; Stein, Frederike; Sudre, Gustavo; Takahashi, Shun; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; van der Lugt, Aad; van Haren, Neeltje E M; Wardlaw, Joanna M; Wen, Wei; Westeneng, Henk-Jan; Wittfeld, Katharina; Zhu, Alyssa H; Zugman, Andre; Armstrong, Nicola J; Bonfiglio, Gaia; Bralten, Janita; Dalvie, Shareefa; Davies, Gail; Di Forti, Marta; Ding, Linda; Donohoe, Gary; Forstner, Andreas J; Gonzalez-Peñas, Javier; Guimaraes, Joao P O F T; Homuth, Georg; Hottenga, Jouke-Jan; Knol, Maria J; Kwok, John B J; Le Hellard, Stephanie; Mather, Karen A; Milaneschi, Yuri; Morris, Derek W; Nöthen, Markus M; Papiol, Sergi; Rietschel, Marcella; Santoro, Marcos L; Steen, Vidar M; Stein, Jason L; Streit, Fabian; Tankard, Rick M; Teumer, Alexander; van 't Ent, Dennis; van der Meer, Dennis; van Eijk, Kristel R; Vassos, Evangelos; Vázquez-Bourgon, Javier; Witt, Stephanie H; IMAGEN Consortium; Adams, Hieab H H; Agartz, Ingrid; Ames, David; Amunts, Katrin; Andreassen, Ole A; Arango, Celso; Banaschewski, Tobias; Baune, Bernhard T; Belangero, Sintia I; Bokde, Arun L W; Boomsma, Dorret I; Bressan, Rodrigo A; Brodaty, Henry; Buitelaar, Jan K; Cahn, Wiepke; Caspers, Svenja; Cichon, Sven; Crespo-Facorro, Benedicto; Cox, Simon R; Dannlowski, Udo; Elvsåshagen, Torbjørn; Espeseth, Thomas; Falkai, Peter G; Fisher, Simon E; Flor, Herta; Fullerton, Janice M; Garavan, Hugh; Gowland, Penny A; Grabe, Hans J; Hahn, Tim; Heinz, Andreas; Hillegers, Manon; Hoare, Jacqueline; Hoekstra, Pieter J; Ikram, Mohammad A; Jackowski, Andrea P; Jansen, Andreas; Jönsson, Erik G; Kahn, Rene S; Kircher, Tilo; Korgaonkar, Mayuresh S; Krug, Axel; Lemaitre, Herve; Malt, Ulrik F; Martinot, Jean-Luc; McDonald, Colm; Mitchell, Philip B; Muetzel, Ryan L; Murray, Robin M; Nees, Frauke; Nenadić, Igor; Oosterlaan, Jaap; Ophoff, Roel A; Pan, Pedro M; Penninx, Brenda W J H; Poustka, Luise; Sachdev, Perminder S; Salum, Giovanni A; Schofield, Peter R; Schumann, Gunter; Shaw, Philip; Sim, Kang; Smolka, Michael N; Stein, Dan J; Trollor, Julian N; van den Berg, Leonard H; Veldink, Jan H; Walter, Henrik; Westlye, Lars T; Whelan, Robert; White, Tonya; Wright, Margaret J; Medland, Sarah E; Franke, (see original citation for additional authors) Nature neuroscience 35383335 2022 Apr
Federated analysis of BRCA1 and BRCA2 variation in a Japanese cohort. Casaletto, James; Parsons, Michael; Markello, Charles; Iwasaki, Yusuke; Momozawa, Yukihide; Spurdle, Amanda B; Cline, Melissa Cell genomics 35373174 2022 Mar 09
Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing. Goenka, Sneha D; Gorzynski, John E; Shafin, Kishwar; Fisk, Dianna G; Pesout, Trevor; Jensen, Tanner D; Monlong, Jean; Chang, Pi-Chuan; Baid, Gunjan; Bernstein, Jonathan A; Christle, Jeffrey W; Dalton, Karen P; Garalde, Daniel R; Grove, Megan E; Guillory, Joseph; Kolesnikov, Alexey; Nattestad, Maria; Ruzhnikov, Maura R Z; Samadi, Mehrzad; Sethia, Ankit; Spiteri, Elizabeth; Wright, Christopher J; Xiong, Katherine; Zhu, Tong; Jain, Miten; Sedlazeck, Fritz J; Carroll, Andrew; Paten, Benedict; Ashley, Euan A Nature biotechnology 35347328 2022 Jul
Linking complex disease and exposure data-insights from an environmental and occupational health study. Ives, Cataia; Pan, Huaqin; Edwards, Stephen W; Nelms, Mark; Covert, Hannah; Lichtveld, Maureen Y; Harville, Emily W; Wickliffe, Jeffrey K; Zijlmans, Wilco; Hamilton, Carol M Journal of exposure science & environmental epidemiology 35347232 2022 Mar 28
LEARNING TO SYNTHESIZE CORTICAL MORPHOLOGICAL CHANGES USING GRAPH CONDITIONAL VARIATIONAL AUTOENCODER. Chai, Yaqiong; Liu, Mengting; Duffy, Ben A; Kim, Hosung Proceedings. IEEE International Symposium on Biomedical Imaging 35330877 2021 Apr
The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification. Wagner, Alex H; Babb, Lawrence; Alterovitz, Gil; Baudis, Michael; Brush, Matthew; Cameron, Daniel L; Cline, Melissa; Griffith, Malachi; Griffith, Obi L; Hunt, Sarah E; Kreda, David; Lee, Jennifer M; Li, Stephanie; Lopez, Javier; Moyer, Eric; Nelson, Tristan; Patel, Ronak Y; Riehle, Kevin; Robinson, Peter N; Rynearson, Shawn; Schuilenburg, Helen; Tsukanov, Kirill; Walsh, Brian; Konopko, Melissa; Rehm, Heidi L; Yates, Andrew D; Freimuth, Robert R; Hart, Reece K Cell genomics 35311178 2021 Nov 10
mTeeth: Identifying Brushing Teeth Surfaces Using Wrist-Worn Inertial Sensors. Akther, Sayma; Saleheen, Nazir; Saha, Mithun; Shetty, Vivek; Kumar, Santosh Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies 35309968 2021 Jun
Remodeling of the Cortical Structural Connectome in Posttraumatic Stress Disorder: Results From the ENIGMA-PGC Posttraumatic Stress Disorder Consortium. Sun, Delin; Rakesh, Gopalkumar; Clarke-Rubright, Emily K; Haswell, Courtney C; Logue, Mark W; O'Leary, Erin N; Cotton, Andrew S; Xie, Hong; Dennis, Emily L; Jahanshad, Neda; Salminen, Lauren E; Thomopoulos, Sophia I; Rashid, Faisal M; Ching, Christopher R K; Koch, Saskia B J; Frijling, Jessie L; Nawijn, Laura; van Zuiden, Mirjam; Zhu, Xi; Suarez-Jimenez, Benjamin; Sierk, Anika; Walter, Henrik; Manthey, Antje; Stevens, Jennifer S; Fani, Negar; van Rooij, Sanne J H; Stein, Murray B; Bomyea, Jessica; Koerte, Inga; Choi, Kyle; van der Werff, Steven J A; Vermeiren, Robert R J M; Herzog, Julia I; Lebois, Lauren A M; Baker, Justin T; Ressler, Kerry J; Olson, Elizabeth A; Straube, Thomas; Korgaonkar, Mayuresh S; Andrew, Elpiniki; Zhu, Ye; Li, Gen; Ipser, Jonathan; Hudson, Anna R; Peverill, Matthew; Sambrook, Kelly; Gordon, Evan; Baugh, Lee A; Forster, Gina; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent A; Maron-Katz, Adi; du Plessis, Stefan; Disner, Seth G; Davenport, Nicholas D; Grupe, Dan; Nitschke, Jack B; deRoon-Cassini, Terri A; Fitzgerald, Jacklynn; Krystal, John H; Levy, Ifat; Olff, Miranda; Veltman, Dick J; Wang, Li; Neria, Yuval; De Bellis, Michael D; Jovanovic, Tanja; Daniels, Judith K; Shenton, Martha E; van de Wee, Nic J A; Schmahl, Christian; Kaufman, Milissa L; Rosso, Isabelle M; Sponheim, Scott R; Hofmann, David Bernd; Bryant, Richard A; Fercho, Kelene A; Stein, Dan J; Mueller, Sven C; Phan, K Luan; McLaughlin, Katie A; Davidson, Richard J; Larson, Christine; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Gomaa, Hassaan; Etkin, Amit; Seedat, Soraya; Harpaz-Rotem, Ilan; Liberzon, Israel; Wang, Xin; Thompson, Paul M; Morey, Rajendra A Biological psychiatry. Cognitive neuroscience and neuroimaging 35307575 2022 09
Long-term Survival after Hematopoietic Cell Transplant for Sickle Cell Disease Compared to the United States Population. St Martin, Andrew; Hebert, Kyle M; Serret-Larmande, Arnaud; Jouhet, Vianney; Hughes, Emily; Stedman, Jason; DeSain, Thomas; Pillion, Danielle; Lyons, Jessica C; Steinert, Patricia; Avillach, Paul; Eapen, Mary Transplantation and cellular therapy 35302009 2022 Mar 15
Scaling Recurrent Models via Orthogonal Approximations in Tensor Trains. Mehta, Ronak; Chakraborty, Rudrasis; Xiong, Yunyang; Singh, Vikas Proceedings. IEEE International Conference on Computer Vision 35291675 2019 Oct-Nov
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. LeDuc, Richard D; Deutsch, Eric W; Binz, Pierre-Alain; Fellers, Ryan T; Cesnik, Anthony J; Klein, Joshua A; Van Den Bossche, Tim; Gabriels, Ralf; Yalavarthi, Arshika; Perez-Riverol, Yasset; Carver, Jeremy; Bittremieux, Wout; Kawano, Shin; Pullman, Benjamin; Bandeira, Nuno; Kelleher, Neil L; Thomas, Paul M; Vizcaíno, Juan Antonio Journal of proteome research 35290070 2022 Apr 01
Age-dependent white matter disruptions after military traumatic brain injury: Multivariate analysis results from ENIGMA brain injury. Bouchard, Heather C; Sun, Delin; Dennis, Emily L; Newsome, Mary R; Disner, Seth G; Elman, Jeremy; Silva, Annelise; Velez, Carmen; Irimia, Andrei; Davenport, Nicholas D; Sponheim, Scott R; Franz, Carol E; Kremen, William S; Coleman, Michael J; Williams, M Wright; Geuze, Elbert; Koerte, Inga K; Shenton, Martha E; Adamson, Maheen M; Coimbra, Raul; Grant, Gerald; Shutter, Lori; George, Mark S; Zafonte, Ross D; McAllister, Thomas W; Stein, Murray B; Thompson, Paul M; Wilde, Elisabeth A; Tate, David F; Sotiras, Aristeidis; Morey, Rajendra A Human brain mapping 35289463 2022 Jun 01
Automatic wound detection and size estimation using deep learning algorithms. Carrión, Héctor; Jafari, Mohammad; Bagood, Michelle Dawn; Yang, Hsin-Ya; Isseroff, Roslyn Rivkah; Gomez, Marcella PLoS computational biology 35275923 2022 Mar
Associations of delay discounting and drinking trajectories from ages 14 to 22. Fröhner, Juliane H; Ripke, Stephan; Jurk, Sarah; Li, Shu-Chen; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Smolka, Michael N; IMAGEN Consortium Alcoholism, clinical and experimental research 35257381 2022 Apr
Survival of Hydroxyapatite-Coated Versus Non-hydroxyapatite-Coated Total Hip Arthroplasty Implants in a Veteran Population. Tyagi, Vineet; Harris, Alex H S; Giori, Nicholas J The Journal of arthroplasty 35219818 2022 06
Increased expression of SLC25A1/CIC causes an autistic-like phenotype with altered neuron morphology. Rigby, Michael J; Orefice, Nicola Salvatore; Lawton, Alexis J; Ma, Min; Shapiro, Samantha L; Yi, Sue Y; Dieterich, Inca A; Frelka, Alyssa; Miles, Hannah N; Pearce, Robert A; Yu, John Paul J; Li, Lingjun; Denu, John M; Puglielli, Luigi Brain : a journal of neurology 35203088 2022 Apr 18
STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity. Borba, Joyce V B; Alves, Vinicius M; Braga, Rodolpho C; Korn, Daniel R; Overdahl, Kirsten; Silva, Arthur C; Hall, Steven U S; Overdahl, Erik; Kleinstreuer, Nicole; Strickland, Judy; Allen, David; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, Alexander Environmental health perspectives 35192406 2022 02
The thalamus and its subnuclei-a gateway to obsessive-compulsive disorder. Weeland, Cees J; Kasprzak, Selina; de Joode, Niels T; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Balachander, Srinivas; Banaj, Nerisa; Bargallo, Nuria; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Brecke, Vilde; Brem, Silvia; Cappi, Carolina; Cheng, Yuqi; Cho, Kang Ik K; Costa, Daniel L C; Dallaspezia, Sara; Denys, Damiaan; Eng, Goi Khia; Ferreira, Sónia; Feusner, Jamie D; Fontaine, Martine; Fouche, Jean-Paul; Grazioplene, Rachael G; Gruner, Patricia; He, Mengxin; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Hu, Hao; Jaspers-Fayer, Fern; Kathmann, Norbert; Kaufmann, Christian; Kim, Minah; Koch, Kathrin; Bin Kwak, Yoo; Kwon, Jun Soo; Lazaro, Luisa; Li, Chiang-Shan R; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, Jose M; Minnuzi, Luciano; Moreira, Pedro Silva; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Narayanaswamy, Janardhanan C; Nurmi, Erika L; Ortiz, Ana E; Pariente, Jose C; Piacentini, John; Picó-Pérez, Maria; Piras, Fabrizio; Piras, Federica; Pittenger, Christopher; Reddy, Y C Janardhan; Rodriguez-Manrique, Daniela; Sakai, Yuki; Shimizu, Eiji; Shivakumar, Venkataram; Simpson, Helen Blair; Soreni, Noam; Soriano-Mas, Carles; Sousa, Nuno; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Takahashi, Jumpei; Tanamatis, Tais; Tang, Jinsong; Thorsen, Anders Lillevik; Tolin, David; van der Werf, Ysbrand D; van Marle, Hein; van Wingen, Guido A; Vecchio, Daniela; Venkatasubramanian, G; Walitza, Susanne; Wang, Jicai; Wang, Zhen; Watanabe, Anri; Wolters, Lidewij H; Xu, Xiufeng; Yun, Je-Yeon; Zhao, Qing; ENIGMA OCD Working Group; White, Tonya; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A; Vriend, Chris Translational psychiatry 35190533 2022 Feb 21
A Developmental Perspective on Facets of Impulsivity and Brain Activity Correlates From Adolescence to Adulthood. Kaiser, Anna; Holz, Nathalie E; Banaschewski, Tobias; Baumeister, Sarah; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Millenet, Sabina; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Schwarz, Emanuel; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Brandeis, Daniel; Nees, Frauke; IMAGEN Consortium Biological psychiatry. Cognitive neuroscience and neuroimaging 35182817 2022 Nov
SLC13A5/sodium-citrate co-transporter overexpression causes disrupted white matter integrity and an autistic-like phenotype. Rigby, Michael J; Orefice, Nicola Salvatore; Lawton, Alexis J; Ma, Min; Shapiro, Samantha L; Yi, Sue Y; Dieterich, Inca A; Frelka, Alyssa; Miles, Hannah N; Pearce, Robert A; Yu, John Paul J; Li, Lingjun; Denu, John M; Puglielli, Luigi Brain communications 35146426 2022 Feb
Standardized Integration of Person-Generated Data Into Routine Clinical Care. Zeng, Billy; Bove, Riley; Carini, Simona; Lee, Jonathan Shing-Jih; Pollak, J P; Schleimer, Erica; Sim, Ida JMIR mHealth and uHealth 35142627 2022 02 10
Subtly altered topological asymmetry of brain structural covariance networks in autism spectrum disorder across 43 datasets from the ENIGMA consortium. Sha, Zhiqiang; van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Bernhardt, Boris; Bolte, Sven; Busatto, Geraldo F; Calderoni, Sara; Calvo, Rosa; Daly, Eileen; Deruelle, Christine; Duan, Meiyu; Duran, Fabio Luis Souza; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Fair, Damien; Fedor, Jennifer; Fitzgerald, Jacqueline; Floris, Dorothea L; Franke, Barbara; Freitag, Christine M; Gallagher, Louise; Glahn, David C; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; King, Joseph A; Lazaro, Luisa; Luna, Beatriz; McGrath, Jane; Medland, Sarah E; Muratori, Filippo; Murphy, Declan G M; Neufeld, Janina; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Pariente, Jose C; Postema, Merel C; Remnelius, Karl Lundin; Retico, Alessandra; Rosa, Pedro Gomes Penteado; Rubia, Katya; Shook, Devon; Tammimies, Kristiina; Taylor, Margot J; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Thompson, Paul M; Fisher, Simon E; Buitelaar, Jan K; Francks, Clyde Molecular psychiatry 35136228 2022 04
International federation of genomic medicine databases using GA4GH standards. Thorogood, Adrian; Rehm, Heidi L; Goodhand, Peter; Page, Angela J H; Joly, Yann; Baudis, Michael; Rambla, Jordi; Navarro, Arcadi; Nyronen, Tommi H; Linden, Mikael; Dove, Edward S; Fiume, Marc; Brudno, Michael; Cline, Melissa S; Bimey, Ewan Cell genomics 35128509 2021 Nov 10
DUAL-GLOW: Conditional Flow-Based Generative Model for Modality Transfer. Sun, Haoliang; Mehta, Ronak; Zhou, Hao H; Huang, Zhichun; Johnson, Sterling C; Prabhakaran, Vivek; Singh, Vikas Proceedings. IEEE International Conference on Computer Vision 35125977 2019 Oct-Nov
On Training Deep 3D CNN Models with Dependent Samples in Neuroimaging. Xiong, Yunyang; Kim, Hyunwoo J; Tangirala, Bhargav; Mehta, Ronak; Johnson, Sterling C; Singh, Vikas Information processing in medical imaging : proceedings of the ... conference 35125834 2019 May
LOCALIZING DIFFERENTIALLY EVOLVING COVARIANCE STRUCTURES VIA SCAN STATISTICS. Mehta, Ronak; Kim, Hyunwoo J; Wang, Shulei; Johnson, Sterling C; Yuan, Ming; Singh, Vikas Quarterly of applied mathematics 35125524 2019
Cross disorder comparisons of brain structure in schizophrenia, bipolar disorder, major depressive disorder, and 22q11.2 deletion syndrome: A review of ENIGMA findings. Cheon, Eun-Jin; Bearden, Carrie E; Sun, Daqiang; Ching, Christopher R K; Andreassen, Ole A; Schmaal, Lianne; Veltman, Dick J; Thomopoulos, Sophia I; Kochunov, Peter; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A; van Erp, Theo G M Psychiatry and clinical neurosciences 35119167 2022 Feb 04
The additive impact of cardio-metabolic disorders and psychiatric illnesses on accelerated brain aging. Ryan, Meghann C; Hong, L Elliot; Hatch, Kathryn S; Gao, Si; Chen, Shuo; Haerian, Krystl; Wang, Jingtao; Goldwaser, Eric L; Du, Xiaoming; Adhikari, Bhim M; Bruce, Heather; Hare, Stephanie; Kvarta, Mark D; Jahanshad, Neda; Nichols, Thomas E; Thompson, Paul M; Kochunov, Peter Human brain mapping 35112422 2022 Apr 15
Contraception information on the websites of student health centers in the United States. Kakar, Venoo; Kulkarni, Anagha; Holschuh, Carrie; Smirnova, Anastasia; Modrek, Sepideh Contraception 35085543 2022 08
Mitochondrial DNA variation across 56,434 individuals in gnomAD. Laricchia, Kristen M; Lake, Nicole J; Watts, Nicholas A; Shand, Megan; Haessly, Andrea; Gauthier, Laura; Benjamin, David; Banks, Eric; Soto, Jose; Garimella, Kiran; Emery, James; Genome Aggregation Database Consortium; Rehm, Heidi L; MacArthur, Daniel G; Tiao, Grace; Lek, Monkol; Mootha, Vamsi K; Calvo, Sarah E Genome research 35074858 2022 03
GA4GH: International policies and standards for data sharing across genomic research and healthcare. Rehm, Heidi L; Page, Angela J H; Smith, Lindsay; Adams, Jeremy B; Alterovitz, Gil; Babb, Lawrence J; Barkley, Maxmillian P; Baudis, Michael; Beauvais, Michael J S; Beck, Tim; Beckmann, Jacques S; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K; Boughtwood, Tiffany F; Bourque, Guillaume; Bowers, Sarion R; Brookes, Anthony J; Brudno, Michael; Brush, Matthew H; Bujold, David; Burdett, Tony; Buske, Orion J; Cabili, Moran N; Cameron, Daniel L; Carroll, Robert J; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P; Chen, Shu Hui; Cherry, J Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L; Cook-Deegan, Robert M; Courtot, Mélanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M; Denisko, Danielle; Doerr, Megan J; Dolman, Lena I; Dove, Edward S; Dursi, L Jonathan; Dyke, Stephanie O M; Eddy, James A; Eilbeck, Karen; Ellrott, Kyle P; Fairley, Susan; Fakhro, Khalid A; Firth, Helen V; Fitzsimons, Michael S; Fiume, Marc; Flicek, Paul; Fore, Ian M; Freeberg, Mallory A; Freimuth, Robert R; Fromont, Lauren A; Fuerth, Jonathan; Gaff, Clara L; Gan, Weiniu; Ghanaim, Elena M; Glazer, David; Green, Robert C; Griffith, Malachi; Griffith, Obi L; Grossman, Robert L; Groza, Tudor; Auvil, Jaime M Guidry; Guigó, Roderic; Gupta, Dipayan; Haendel, Melissa A; Hamosh, Ada; Hansen, David P; Hart, Reece K; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M; Ho, Calvin W L; Hobb, Ashley E; Hoffman, Michael M; Hofmann, Oliver M; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E; Husami, Ammar; Jacobsen, Julius O; Jamuar, Saumya S; Janes, Elizabeth L; Jeanson, Francis; Jené, Aina; Johns, Amber L; Joly, Yann; Jones, Steven J M; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M; Konopko, Melissa A; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F; Linden, Mikael; Liu, Xianglin; Udara Liyanage, Isuru; Lopez, Javier; Lucassen, Anneke M; Lukowski, Michael; Mann, Alice L; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J; Molnár-Gábor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyrönen, Tommi H; O'Connor, Brian D; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A D; Palumbo, Emilio; Parkinson, Helen E; Philippakis, Anthony A; Pizarro, Angel D; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A; Robinson, Peter N; Rodarmer, Kurt W; Rodriguez, Laura Lyman; Rubin, Alan F; Rueda, Manuel; Rushton, Gregory A; Ryan, Rosalyn S; Saunders, Gary I; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C; Skantharajah, Neerjah; Smith, Albert V; Sofia, Heidi J; Spalding, Dylan; Spurdle, Amanda B; Stark, Zornitza; Stein, Lincoln D; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A; Thomson, Alastair A; Thorogood, Adrian; Tickle, Timothy L; Tokunaga, Katsushi; Törnroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F; Viner, Coby; Voisin, Craig; Wagner, Alex H; Wallace, Susan E; Walsh, Brian P; Williams, Marc S; Winkler, Eva C; Wold, Barbara J; Wood, Grant M; Woolley, J Patrick; Yamasaki, Chisato; Yates, Andrew D; Yung, Christina K; Zass, Lyndon J; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan Cell genomics 35072136 2021 Nov 10
STRUCTURED CORRELATION DETECTION WITH APPLICATION TO COLOCALIZATION ANALYSIS IN DUAL-CHANNEL FLUORESCENCE MICROSCOPIC IMAGING. Wang, Shulei; Fan, Jianqing; Pocock, Ginger; Arena, Ellen T; Eliceiri, Kevin W; Yuan, Ming Statistica Sinica 35046630 2021 Jan
Large-scale diet tracking data reveal disparate associations between food environment and diet. Althoff, Tim; Nilforoshan, Hamed; Hua, Jenna; Leskovec, Jure Nature communications 35042849 2022 01 18
Minimal Information about MHC Multimers (MIAMM). Vita, Randi; Mody, Apurva; Overton, James A; Buus, Soren; Haley, Stephen T; Sette, Alessandro; Mallajosyula, Vamsee; Davis, Mark M; Long, Dale L; Willis, Richard A; Peters, Bjoern; Altman, John D Journal of immunology (Baltimore, Md. : 1950) 35042788 2022 02 01
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. Gupta, Parul; Naithani, Sushma; Preece, Justin; Kim, Sunghwan; Cheng, Tiejun; D'Eustachio, Peter; Elser, Justin; Bolton, Evan E; Jaiswal, Pankaj Methods in molecular biology (Clifton, N.J.) 35037224 2022
Mapping Complex Brain Torque Components and Their Genetic Architecture and Phenomic Associations in 24,112 Individuals. Zhao, Lu; Matloff, William; Shi, Yonggang; Cabeen, Ryan P; Toga, Arthur W Biological psychiatry 35027165 2022 Apr 15
The microrandomized trial for developing digital interventions: Experimental design and data analysis considerations. Qian, Tianchen; Walton, Ashley E; Collins, Linda M; Klasnja, Predrag; Lanza, Stephanie T; Nahum-Shani, Inbal; Rabbi, Mashfiqui; Russell, Michael A; Walton, Maureen A; Yoo, Hyesun; Murphy, Susan A Psychological methods 35025583 2022 Jan 13
Accurate diagnosis of atopic dermatitis by combining transcriptome and microbiota data with supervised machine learning. Jiang, Ziyuan; Li, Jiajin; Kong, Nahyun; Kim, Jeong-Hyun; Kim, Bong-Soo; Lee, Min-Jung; Park, Yoon Mee; Lee, So-Yeon; Hong, Soo-Jong; Sul, Jae Hoon Scientific reports 34997172 2022 Jan 07
Coupled exoskeleton assistance simplifies control and maintains metabolic benefits: A simulation study. Bianco, Nicholas A; Franks, Patrick W; Hicks, Jennifer L; Delp, Scott L PloS one 34986191 2022
Memory-Aware Active Learning in Mobile Sensing Systems. Ashari, Zhila Esna; Chaytor, Naomi S; Cook, Diane J; Ghasemzadeh, Hassan IEEE transactions on mobile computing 34970086 2022 Jan 01
Brain Signatures During Reward Anticipation Predict Persistent Attention-Deficit/Hyperactivity Disorder Symptoms. Chen, Di; Jia, Tianye; Cheng, Wei; Cao, Miao; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Robbins, T W; Sahakian, Barbara J; Schumann, Gunter; Feng, Jianfeng; IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 34954028 2022 08
Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders. Papale, Ligia A; Madrid, Andy; Zhang, Qi; Chen, Kailei; Sak, Lara; Keleş, Sündüz; Alisch, Reid S Genome research 34949667 2022 Feb
Trauma and posttraumatic stress disorder modulate polygenic predictors of hippocampal and amygdala volume. Zheng, Yuanchao; Garrett, Melanie E; Sun, Delin; Clarke-Rubright, Emily K; Haswell, Courtney C; Maihofer, Adam X; Elman, Jeremy A; Franz, Carol E; Lyons, Michael J; Kremen, William S; Peverill, Matthew; Sambrook, Kelly; McLaughlin, Katie A; Davenport, Nicholas D; Disner, Seth; Sponheim, Scott R; Andrew, Elpiniki; Korgaonkar, Mayuresh; Bryant, Richard; Varkevisser, Tim; Geuze, Elbert; Coleman, Jonathan; Beckham, Jean C; Kimbrel, Nathan A; Sullivan, Danielle; Miller, Mark; Hayes, Jasmeet; Verfaellie, Mieke; Wolf, Erika; Salat, David; Spielberg, Jeffrey M; Milberg, William; McGlinchey, Regina; Dennis, Emily L; Thompson, Paul M; Medland, Sarah; Jahanshad, Neda; Nievergelt, Caroline M; Ashley-Koch, Allison E; Logue, Mark W; Morey, Rajendra A Translational psychiatry 34916497 2021 Dec 16
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes. Sirén, Jouni; Monlong, Jean; Chang, Xian; Novak, Adam M; Eizenga, Jordan M; Markello, Charles; Sibbesen, Jonas A; Hickey, Glenn; Chang, Pi-Chuan; Carroll, Andrew; Gupta, Namrata; Gabriel, Stacey; Blackwell, Thomas W; Ratan, Aakrosh; Taylor, Kent D; Rich, Stephen S; Rotter, Jerome I; Haussler, David; Garrison, Erik; Paten, Benedict Science (New York, N.Y.) 34914532 2021 12 17
Multipollutant, longitudinal analysis of the association between urinary tungsten and incident diabetes in a rural population. Riseberg, Emily; James, Katherine A; Woodin, Mark; Melamed, Rachel; Alderete, Tanya; Corlin, Laura Environmental epidemiology (Philadelphia, Pa.) 34909553 2021 Dec
Assessment of brain age in posttraumatic stress disorder: Findings from the ENIGMA PTSD and brain age working groups. Clausen, Ashley N; Fercho, Kelene A; Monsour, Molly; Disner, Seth; Salminen, Lauren; Haswell, Courtney C; Rubright, Emily Clarke; Watts, Amanda A; Buckley, M Nicole; Maron-Katz, Adi; Sierk, Anika; Manthey, Antje; Suarez-Jimenez, Benjamin; Olatunji, Bunmi O; Averill, Christopher L; Hofmann, David; Veltman, Dick J; Olson, Elizabeth A; Li, Gen; Forster, Gina L; Walter, Henrik; Fitzgerald, Jacklynn; Théberge, Jean; Simons, Jeffrey S; Bomyea, Jessica A; Frijling, Jessie L; Krystal, John H; Baker, Justin T; Phan, K Luan; Ressler, Kerry; Han, Laura K M; Nawijn, Laura; Lebois, Lauren A M; Schmaal, Lianne; Densmore, Maria; Shenton, Martha E; van Zuiden, Mirjam; Stein, Murray; Fani, Negar; Simons, Raluca M; Neufeld, Richard W J; Lanius, Ruth; van Rooij, Sanne; Koch, Saskia B J; Bonomo, Serena; Jovanovic, Tanja; deRoon-Cassini, Terri; Ely, Timothy D; Magnotta, Vincent A; He, Xiaofu; Abdallah, Chadi G; Etkin, Amit; Schmahl, Christian; Larson, Christine; Rosso, Isabelle M; Blackford, Jennifer Urbano; Stevens, Jennifer S; Daniels, Judith K; Herzog, Julia; Kaufman, Milissa L; Olff, Miranda; Davidson, Richard J; Sponheim, Scott R; Mueller, Sven C; Straube, Thomas; Zhu, Xi; Neria, Yuval; Baugh, Lee A; Cole, James H; Thompson, Paul M; Morey, Rajendra A Brain and behavior 34907666 2022 Jan
Characterizing reward system neural trajectories from adolescence to young adulthood. Cao, Zhipeng; Ottino-Gonzalez, Jonatan; Cupertino, Renata B; Juliano, Anthony; Chaarani, Bader; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Robinson, Lauren; Smolka, Michael N; Walter, Henrik; Winterer, Jeanne; Schumann, Gunter; Whelan, Robert; Mackey, Scott; Garavan, Hugh; IMAGEN consortiu Developmental cognitive neuroscience 34894615 2021 Dec
Diagnosis of bipolar disorders and body mass index predict clustering based on similarities in cortical thickness-ENIGMA study in 2436 individuals. McWhinney, Sean R; Abé, Christoph; Alda, Martin; Benedetti, Francesco; Bøen, Erlend; Del Mar Bonnin, Caterina; Borgers, Tiana; Brosch, Katharina; Canales-Rodríguez, Erick J; Cannon, Dara M; Dannlowski, Udo; Diaz-Zuluaga, Ana M; Dietze, Lorielle; Elvsåshagen, Torbjørn; Eyler, Lisa T; Fullerton, Janice M; Goikolea, Jose M; Goltermann, Janik; Grotegerd, Dominik; Haarman, Bartholomeus C M; Hahn, Tim; Howells, Fleur M; Ingvar, Martin; Kircher, Tilo T J; Krug, Axel; Kuplicki, Rayus T; Landén, Mikael; Lemke, Hannah; Liberg, Benny; Lopez-Jaramillo, Carlos; Malt, Ulrik F; Martyn, Fiona M; Mazza, Elena; McDonald, Colm; McPhilemy, Genevieve; Meier, Sandra; Meinert, Susanne; Meller, Tina; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadic, Igor; Opel, Nils; Ophoff, Roel A; Overs, Bronwyn J; Pfarr, Julia-Katharina; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Raduà, Joaquim; Repple, Jonathan; Richter, Maike; Ringwald, Kai G; Roberts, Gloria; Ross, Alex; Salvador, Raymond; Savitz, Jonathan; Schmitt, Simon; Schofield, Peter R; Sim, Kang; Stein, Dan J; Stein, Frederike; Temmingh, Henk S; Thiel, Katharina; Thomopoulos, Sophia I; van Haren, Neeltje E M; Van Gestel, Holly; Vargas, Cristian; Vieta, Eduard; Vreeker, Annabel; Waltemate, Lena; Yatham, Lakshmi N; Ching, Christopher R K; Andreassen, Ole A; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group Bipolar disorders 34894200 2021 Dec 11
Predicting brain age based on sleep EEG and DenseNet. Yook, Soonhyun; Miao, Yizhan; Park, Claire; Park, Hea Ree; Kim, Jinyoung; Lim, Diane C; Yeon Joo, Eun; Kim, Hosung Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference 34891282 2021 11
In situ functional cell phenotyping reveals microdomain networks in colorectal cancer recurrence. Furman, Samantha A; Stern, Andrew M; Uttam, Shikhar; Taylor, D Lansing; Pullara, Filippo; Chennubhotla, S Chakra Cell reports methods 34888541 2021 Sep 27
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Petras, Daniel; Phelan, Vanessa V; Acharya, Deepa; Allen, Andrew E; Aron, Allegra T; Bandeira, Nuno; Bowen, Benjamin P; Belle-Oudry, Deirdre; Boecker, Simon; Cummings Jr, Dale A; Deutsch, Jessica M; Fahy, Eoin; Garg, Neha; Gregor, Rachel; Handelsman, Jo; Navarro-Hoyos, Mirtha; Jarmusch, Alan K; Jarmusch, Scott A; Louie, Katherine; Maloney, Katherine N; Marty, Michael T; Meijler, Michael M; Mizrahi, Itzhak; Neve, Rachel L; Northen, Trent R; Molina-Santiago, Carlos; Panitchpakdi, Morgan; Pullman, Benjamin; Puri, Aaron W; Schmid, Robin; Subramaniam, Shankar; Thukral, Monica; Vasquez-Castro, Felipe; Dorrestein, Pieter C; Wang, Mingxun Nature methods 34862502 2022 02
Variant interpretation using population databases: Lessons from gnomAD. Gudmundsson, Sanna; Singer-Berk, Moriel; Watts, Nicholas A; Phu, William; Goodrich, Julia K; Solomonson, Matthew; Genome Aggregation Database Consortium; Rehm, Heidi L; MacArthur, Daniel G; O'Donnell-Luria, Anne Human mutation 34859531 2021 Dec 02
Opal: an implementation science tool for machine learning clinical decision support in anesthesia. Bishara, Andrew; Wong, Andrew; Wang, Linshanshan; Chopra, Manu; Fan, Wudi; Lin, Alan; Fong, Nicholas; Palacharla, Aditya; Spinner, Jon; Armstrong, Rachelle; Pletcher, Mark J; Lituiev, Dmytro; Hadley, Dexter; Butte, Atul Journal of clinical monitoring and computing 34837585 2022 Oct
Dynamic models of stress-smoking responses based on high-frequency sensor data. NPJ digital medicine 34815538 2021 Nov 23
The reactome pathway knowledgebase 2022. Gillespie, Marc; Jassal, Bijay; Stephan, Ralf; Milacic, Marija; Rothfels, Karen; Senff-Ribeiro, Andrea; Griss, Johannes; Sevilla, Cristoffer; Matthews, Lisa; Gong, Chuqiao; Deng, Chuan; Varusai, Thawfeek; Ragueneau, Eliot; Haider, Yusra; May, Bruce; Shamovsky, Veronica; Weiser, Joel; Brunson, Timothy; Sanati, Nasim; Beckman, Liam; Shao, Xiang; Fabregat, Antonio; Sidiropoulos, Konstantinos; Murillo, Julieth; Viteri, Guilherme; Cook, Justin; Shorser, Solomon; Bader, Gary; Demir, Emek; Sander, Chris; Haw, Robin; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, Peter Nucleic acids research 34788843 2022 01 07
Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures. Ding, Hongxu; Anastopoulos, Ioannis; Bailey 4th, Andrew D; Stuart, Joshua; Paten, Benedict Nature communications 34764310 2021 11 11
Associations of alcohol use, HIV infection, and age with brain white matter microstructure. Monnig, Mollie A; Gullett, Joseph M; Porges, Eric C; Woods, Adam J; Monti, Peter M; Tashima, Karen; Jahanshad, Neda; Thompson, Paul; Nir, Talia; Cohen, Ronald A Journal of neurovirology 34750783 2021 Dec
Nyströmformer: A Nystöm-based Algorithm for Approximating Self-Attention. Xiong, Yunyang; Zeng, Zhanpeng; Chakraborty, Rudrasis; Tan, Mingxing; Fung, Glenn; Li, Yin; Singh, Vikas Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence 34745767 2021
Comparing empirical kinship derived heritability for imaging genetics traits in the UK biobank and human connectome project. Gao, Si; Donohue, Brian; Hatch, Kathryn S; Chen, Shuo; Ma, Tianzhou; Ma, Yizhou; Kvarta, Mark D; Bruce, Heather; Adhikari, Bhim M; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Hong, L Elliot; Medland, Sarah E; Ganjgahi, Habib; Nichols, Thomas E; Kochunov, Peter NeuroImage 34740793 2021 Dec 15
Ibrutinib Blocks YAP1 Activation and Reverses BRAF Inhibitor Resistance in Melanoma Cells. Misek, Sean A; Newbury, Patrick A; Chekalin, Evgenii; Paithankar, Shreya; Doseff, Andrea I; Chen, Bin; Gallo, Kathleen A; Neubig, Richard R Molecular pharmacology 34732527 2022 01
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. Perez-Riverol, Yasset; Bai, Jingwen; Bandla, Chakradhar; García-Seisdedos, David; Hewapathirana, Suresh; Kamatchinathan, Selvakumar; Kundu, Deepti J; Prakash, Ananth; Frericks-Zipper, Anika; Eisenacher, Martin; Walzer, Mathias; Wang, Shengbo; Brazma, Alvis; Vizcaíno, Juan Antonio Nucleic acids research 34723319 2022 Jan 07
Knowledge-based approaches to drug discovery for rare diseases. Alves, Vinicius M; Korn, Daniel; Pervitsky, Vera; Thieme, Andrew; Capuzzi, Stephen J; Baker, Nancy; Chirkova, Rada; Ekins, Sean; Muratov, Eugene N; Hickey, Anthony; Tropsha, Alexander Drug discovery today 34718207 2022 02
Global urbanicity is associated with brain and behaviour in young people. Xu, Jiayuan; Liu, Xiaoxuan; Li, Qiaojun; Goldblatt, Ran; Qin, Wen; Liu, Feng; Chu, Congying; Luo, Qiang; Ing, Alex; Guo, Lining; Liu, Nana; Liu, Huaigui; Huang, Conghong; Cheng, Jingliang; Wang, Meiyun; Geng, Zuojun; Zhu, Wenzhen; Zhang, Bing; Liao, Weihua; Qiu, Shijun; Zhang, Hui; Xu, Xiaojun; Yu, Yongqiang; Gao, Bo; Han, Tong; Cui, Guangbin; Chen, Feng; Xian, Junfang; Li, Jiance; Zhang, Jing; Zuo, Xi-Nian; Wang, Dawei; Shen, Wen; Miao, Yanwei; Yuan, Fei; Lui, Su; Zhang, Xiaochu; Xu, Kai; Zhang, Longjiang; Ye, Zhaoxiang; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Robinson, Lauren; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Winterer, Jeanne; Patrick, Kevin; Calhoun, Vince; Li, Mulin Jun; Liang, Meng; Gong, Peng; Barker, Edward D; Clinton, Nicholas; Marquand, Andre; Yu, Le; Yu, Chunshui; Schumann, Gunter; CHIMGEN; IMAGEN Consortia Nature human behaviour 34711977 2022 02
Cortical and subcortical neuroanatomical signatures of schizotypy in 3004 individuals assessed in a worldwide ENIGMA study. Kirschner, Matthias; Hodzic-Santor, Benazir; Antoniades, Mathilde; Nenadic, Igor; Kircher, Tilo; Krug, Axel; Meller, Tina; Grotegerd, Dominik; Fornito, Alex; Arnatkeviciute, Aurina; Bellgrove, Mark A; Tiego, Jeggan; Dannlowski, Udo; Koch, Katharina; Hülsmann, Carina; Kugel, Harald; Enneking, Verena; Klug, Melissa; Leehr, Elisabeth J; Böhnlein, Joscha; Gruber, Marius; Mehler, David; DeRosse, Pamela; Moyett, Ashley; Baune, Bernhard T; Green, Melissa; Quidé, Yann; Pantelis, Christos; Chan, Raymond; Wang, Yi; Ettinger, Ulrich; Debbané, Martin; Derome, Melodie; Gaser, Christian; Besteher, Bianca; Diederen, Kelly; Spencer, Tom J; Fletcher, Paul; Rössler, Wulf; Smigielski, Lukasz; Kumari, Veena; Premkumar, Preethi; Park, Haeme R P; Wiebels, Kristina; Lemmers-Jansen, Imke; Gilleen, James; Allen, Paul; Kozhuharova, Petya; Marsman, Jan-Bernard; Lebedeva, Irina; Tomyshev, Alexander; Mukhorina, Anna; Kaiser, Stefan; Fett, Anne-Kathrin; Sommer, Iris; Schuite-Koops, Sanne; Paquola, Casey; Larivière, Sara; Bernhardt, Boris; Dagher, Alain; Grant, Phillip; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Aleman, André; Modinos, Gemma Molecular psychiatry 34707236 2022 Feb
Dissecting the heterogeneous subcortical brain volume of autism spectrum disorder using community detection. Li, Ting; Hoogman, Martine; Roth Mota, Nina; Buitelaar, Jan K; ENIGMA-ASD working group; Vasquez, Alejandro Arias; Franke, Barbara; van Rooij, Daan Autism research : official journal of the International Society for Autism Research 34704385 2022 01
Empowering study of breast cancer data with application of artificial intelligence technology: promises, challenges, and use cases. Panahiazar, Maryam; Chen, Nolan; Lituiev, Dmytro; Hadley, Dexter Clinical & experimental metastasis 34697751 2022 Feb
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Jackson, Rebecca; Matentzoglu, Nicolas; Overton, James A; Vita, Randi; Balhoff, James P; Buttigieg, Pier Luigi; Carbon, Seth; Courtot, Melanie; Diehl, Alexander D; Dooley, Damion M; Duncan, William D; Harris, Nomi L; Haendel, Melissa A; Lewis, Suzanna E; Natale, Darren A; Osumi-Sutherland, David; Ruttenberg, Alan; Schriml, Lynn M; Smith, Barry; Stoeckert Jr, Christian J; Vasilevsky, Nicole A; Walls, Ramona L; Zheng, Jie; Mungall, Christopher J; Peters, Bjoern Database : the journal of biological databases and curation 34697637 2021 10 26
Advances and Utility of the Human Plasma Proteome. Deutsch, Eric W; Omenn, Gilbert S; Sun, Zhi; Maes, Michal; Pernemalm, Maria; Palaniappan, Krishnan K; Letunica, Natasha; Vandenbrouck, Yves; Brun, Virginie; Tao, Sheng-Ce; Yu, Xiaobo; Geyer, Philipp E; Ignjatovic, Vera; Moritz, Robert L; Schwenk, Jochen M Journal of proteome research 34672606 2021 12 03
Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project. Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Paik, Young-Ki; Cristea, Ileana M; Corrales, Fernando J; Lindskog, Cecilia; Weintraub, Susan; Roehrl, Michael H A; Liu, Siqi; Bandeira, Nuno; Srivastava, Sudhir; Chen, Yu-Ju; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W Journal of proteome research 34670092 2021 12 03
Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans. Cahill, James A; Armstrong, Joel; Deran, Alden; Khoury, Carolyn J; Paten, Benedict; Haussler, David; Jarvis, Erich D Genome research 34667117 2021 Nov
SmokingOpp: Detecting the Smoking 'Opportunity' Context Using Mobile Sensors. Chatterjee, Soujanya; Moreno, Alexander; Lizotte, Steven Lloyd; Akther, Sayma; Ertin, Emre; Fagundes, Christopher P; Lam, Cho; Rehg, James M; Wan, Neng; Wetter, David W; Kumar, Santosh Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies 34651096 2020 Mar
Meta-Analysis illustrates possible role of lipopolysaccharide (LPS)-induced tissue injury in nasopharyngeal carcinoma (NPC) pathogenesis. Allen, David Z; Aljabban, Jihad; Silverman, Dustin; McDermott, Sean; Wanner, Ross A; Rohr, Michael; Hadley, Dexter; Panahiazar, Maryam PloS one 34648530 2021
Estimating time-varying causal excursion effect in mobile health with binary outcomes. Qian, Tianchen; Yoo, Hyesun; Klasnja, Predrag; Almirall, Daniel; Murphy, Susan A Biometrika 34629476 2021 Sep
IntelligentPooling: Practical Thompson Sampling for mHealth. Tomkins, Sabina; Liao, Peng; Klasnja, Predrag; Murphy, Susan Machine learning 34621105 2021 Sep
Extracting social determinants of health from electronic health records using natural language processing: a systematic review. Patra, Braja G; Sharma, Mohit M; Vekaria, Veer; Adekkanattu, Prakash; Patterson, Olga V; Glicksberg, Benjamin; Lepow, Lauren A; Ryu, Euijung; Biernacka, Joanna M; Furmanchuk, Al'ona; George, Thomas J; Hogan, William; Wu, Yonghui; Yang, Xi; Bian, Jiang; Weissman, Myrna; Wickramaratne, Priya; Mann, J John; Olfson, Mark; Campion, Thomas R; Weiner, Mark; Pathak, Jyotishman Journal of the American Medical Informatics Association : JAMIA 34613399 2021 11 25
The Enhancing NeuroImaging Genetics through Meta-Analysis Consortium: 10 Years of Global Collaborations in Human Brain Mapping. Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne; Turner, Jessica A; Winkler, Anderson M; Thomopoulos, Sophia I; Egan, Gary F; Kochunov, Peter Human brain mapping 34612558 2022 Jan
ATLAS: an automated association test using probabilistically linked health records with application to genetic studies. Zhang, Harrison G; Hejblum, Boris P; Weber, Griffin M; Palmer, Nathan P; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Liao, Katherine P; Kohane, Isaac S; Cai, Tianxi Journal of the American Medical Informatics Association : JAMIA 34608931 2021 11 25
Machine Learning Prediction of Liver Allograft Utilization From Deceased Organ Donors Using the National Donor Management Goals Registry. Bishara, Andrew M; Lituiev, Dmytro S; Adelmann, Dieter; Kothari, Rishi P; Malinoski, Darren J; Nudel, Jacob D; Sally, Mitchell B; Hirose, Ryutaro; Hadley, Dexter D; Niemann, Claus U Transplantation direct 34604507 2021 Oct
RCytoGPS: an R package for reading and visualizing cytogenetics data. Abrams, Zachary B; Tally, Dwayne G; Abruzzo, Lynne V; Coombes, Kevin R Bioinformatics (Oxford, England) 34601554 2021 Dec 07
Cortical and subcortical brain structure in generalized anxiety disorder: findings from 28 research sites in the ENIGMA-Anxiety Working Group. Harrewijn, Anita; Cardinale, Elise M; Groenewold, Nynke A; Bas-Hoogendam, Janna Marie; Aghajani, Moji; Hilbert, Kevin; Cardoner, Narcis; Porta-Casteràs, Daniel; Gosnell, Savannah; Salas, Ramiro; Jackowski, Andrea P; Pan, Pedro M; Salum, Giovanni A; Blair, Karina S; Blair, James R; Hammoud, Mira Z; Milad, Mohammed R; Burkhouse, Katie L; Phan, K Luan; Schroeder, Heidi K; Strawn, Jeffrey R; Beesdo-Baum, Katja; Jahanshad, Neda; Thomopoulos, Sophia I; Buckner, Randy; Nielsen, Jared A; Smoller, Jordan W; Soares, Jair C; Mwangi, Benson; Wu, Mon-Ju; Zunta-Soares, Giovana B; Assaf, Michal; Diefenbach, Gretchen J; Brambilla, Paolo; Maggioni, Eleonora; Hofmann, David; Straube, Thomas; Andreescu, Carmen; Berta, Rachel; Tamburo, Erica; Price, Rebecca B; Manfro, Gisele G; Agosta, Federica; Canu, Elisa; Cividini, Camilla; Filippi, Massimo; Kostić, Milutin; Munjiza Jovanovic, Ana; Alberton, Bianca A V; Benson, Brenda; Freitag, Gabrielle F; Filippi, Courtney A; Gold, Andrea L; Leibenluft, Ellen; Ringlein, Grace V; Werwath, Kathryn E; Zwiebel, Hannah; Zugman, André; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Völzke, Henry; Bülow, Robin; Balderston, Nicholas L; Ernst, Monique; Grillon, Christian; Mujica-Parodi, Lilianne R; van Nieuwenhuizen, Helena; Critchley, Hugo D; Makovac, Elena; Mancini, Matteo; Meeten, Frances; Ottaviani, Cristina; Ball, Tali M; Fonzo, Gregory A; Paulus, Martin P; Stein, Murray B; Gur, Raquel E; Gur, Ruben C; Kaczkurkin, Antonia N; Larsen, Bart; Satterthwaite, Theodore D; Harper, Jennifer; Myers, Michael; Perino, Michael T; Sylvester, Chad M; Yu, Qiongru; Lueken, Ulrike; Veltman, Dick J; Thompson, Paul M; Stein, Dan J; Van der Wee, Nic J A; Winkler, Anderson M; Pine, Daniel S Translational psychiatry 34599145 2021 10 01
Individual variation in white matter microstructure is related to better recovery from negative stimuli. Pedersen, Walker S; Dean, Douglas C; Adluru, Nagesh; Gresham, Lauren K; Lee, Seungbeum D; Kelly, Michael P; Mumford, Jeanette A; Davidson, Richard J; Schaefer, Stacey M Emotion (Washington, D.C.) 34591511 2022 Mar
Clinical translational neuroimaging of the antioxidant effect of N-acetylcysteine on neural microstructure. Yi, Sue Y; Barnett, Brian R; Poetzel, McKenzie J; Stowe, Nicholas A; Yu, John-Paul J Magnetic resonance in medicine 34590731 2022 02
Genetic and environmental influences of variation in diffusion MRI measures of white matter microstructure. Luo, Zhan; Adluru, Nagesh; Dean 3rd, Douglas C; Alexander, Andrew L; Goldsmith, H Hill Brain structure & function 34585302 2022 Jan
Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups. Huang, Yufang; Liu, Yifan; Steel, Peter A D; Axsom, Kelly M; Lee, John R; Tummalapalli, Sri Lekha; Wang, Fei; Pathak, Jyotishman; Subramanian, Lakshminarayanan; Zhang, Yiye Journal of the American Medical Informatics Association : JAMIA 34571540 2021 11 25
Similarity and stability of face network across populations and throughout adolescence and adulthood. Liao, Zhijie; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Paus, Tomáš; IMAGEN consortium NeuroImage 34560271 2021 12 01
Multiethnic genome-wide and HLA association study of total serum IgE level. Daya, Michelle; Cox, Corey; Acevedo, Nathalie; Boorgula, Meher P; Campbell, Monica; Chavan, Sameer; Cho, Michael H; David, Gloria L; Kachroo, Priyadarshini; Lasky-Su, Jessica; Li, Xingnan; McHugh, Caitlin P; Qiao, Dandi; Rafaels, Nicholas; Beck, Lisa A; Bleecker, Eugene R; Caraballo, Luis; Cupples, Adrienne L; Figueiredo, Camila A; Gallo, Richard L; Hanifin, Jon; Hansel, Nadia N; Hata, Tissa R; Hersh, Craig P; Knight-Madden, Jennifer; Leung, Donald Y M; Guttman-Yassky, Emma; Meyers, Deborah A; O'Connor, George; Ober, Carole; Ong, Peck Y; Ortega, Victor E; Paller, Amy S; Putcha, Nirupama; Reed, Robert M; Schneider, Lynda C; Silverman, Edwin K; Slifka, Mark K; Spergel, Jonathan M; Vasan, Ramachandran S; Viaud-Martinez, Karine A; Watson, Harold; Weiss, Scott T; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Ruczinski, Ingo; Beaty, Terri H; Mathias, Rasika A; Barnes, Kathleen C The Journal of allergy and clinical immunology 34536413 2021 12
Personalized HeartSteps: A Reinforcement Learning Algorithm for Optimizing Physical Activity. Liao, Peng; Greenewald, Kristjan; Klasnja, Predrag; Murphy, Susan Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies 34527853 2020 Mar
Rare variants in the endocytic pathway are associated with Alzheimer's disease, its related phenotypes, and functional consequences. Zhan, Lingyu; Li, Jiajin; Jew, Brandon; Sul, Jae Hoon PLoS genetics 34516545 2021 Sep
A meta-analysis of deep brain structural shape and asymmetry abnormalities in 2,833 individuals with schizophrenia compared with 3,929 healthy volunteers via the ENIGMA Consortium. Gutman, Boris A; van Erp, Theo G M; Alpert, Kathryn; Ching, Christopher R K; Isaev, Dmitry; Ragothaman, Anjani; Jahanshad, Neda; Saremi, Arvin; Zavaliangos-Petropulu, Artemis; Glahn, David C; Shen, Li; Cong, Shan; Alnaes, Dag; Andreassen, Ole Andreas; Doan, Nhat Trung; Westlye, Lars T; Kochunov, Peter; Satterthwaite, Theodore D; Wolf, Daniel H; Huang, Alexander J; Kessler, Charles; Weideman, Andrea; Nguyen, Dana; Mueller, Bryon A; Faziola, Lawrence; Potkin, Steven G; Preda, Adrian; Mathalon, Daniel H; Bustillo, Juan; Calhoun, Vince; Ford, Judith M; Walton, Esther; Ehrlich, Stefan; Ducci, Giuseppe; Banaj, Nerisa; Piras, Fabrizio; Piras, Federica; Spalletta, Gianfranco; Canales-Rodríguez, Erick J; Fuentes-Claramonte, Paola; Pomarol-Clotet, Edith; Radua, Joaquim; Salvador, Raymond; Sarró, Salvador; Dickie, Erin W; Voineskos, Aristotle; Tordesillas-Gutiérrez, Diana; Crespo-Facorro, Benedicto; Setién-Suero, Esther; van Son, Jacqueline Mayoral; Borgwardt, Stefan; Schönborn-Harrisberger, Fabienne; Morris, Derek; Donohoe, Gary; Holleran, Laurena; Cannon, Dara; McDonald, Colm; Corvin, Aiden; Gill, Michael; Filho, Geraldo Busatto; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Lebedeva, Irina; Kaleda, Vasily; Tomyshev, Alexander; Crow, Tim; James, Anthony; Cervenka, Simon; Sellgren, Carl M; Fatouros-Bergman, Helena; Agartz, Ingrid; Howells, Fleur; Stein, Dan J; Temmingh, Henk; Uhlmann, Anne; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margie; Cobia, Derin; Csernansky, John G; Thompson, Paul M; Turner, Jessica A; Wang, Lei Human brain mapping 34498337 2022 Jan
Open Source Software for Automatic Subregional Assessment of Knee Cartilage Degradation Using Quantitative T2 Relaxometry and Deep Learning. Thomas, Kevin A; Krzemiński, Dominik; Kidziński, Łukasz; Paul, Rohan; Rubin, Elka B; Halilaj, Eni; Black, Marianne S; Chaudhari, Akshay; Gold, Garry E; Delp, Scott L Cartilage 34496667 2021 12
Physarum Powered Differentiable Linear Programming Layers and Applications. Meng, Zihang; Ravi, Sathya N; Singh, Vikas Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence 34484857 2021 Feb
Signaligner Pro: A Tool to Explore and Annotate Multi-day Raw Accelerometer Data. Ponnada, Aditya; Cooper, Seth; Tang, Qu; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, Stephen Proceedings of the ... IEEE International Conference on Pervasive Computing and Communications. IEEE International Conference on Pervasive Computing and Communications 34458663 2021 Mar
CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping. Wen, Andrew; Rasmussen, Luke V; Stone, Daniel; Liu, Sijia; Kiefer, Rick; Adekkanattu, Prakash; Brandt, Pascal S; Pacheco, Jennifer A; Luo, Yuan; Wang, Fei; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian AMIA ... Annual Symposium proceedings. AMIA Symposium 34457178 2021
Integration of NLP2FHIR Representation with Deep Learning Models for EHR Phenotyping: A Pilot Study on Obesity Datasets. Liu, Sijia; Luo, Yuan; Stone, Daniel; Zong, Nansu; Wen, Andrew; Yu, Yue; Rasmussen, Luke V; Wang, Fei; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian AMIA ... Annual Symposium proceedings. AMIA Symposium 34457156 2021
Self-reported oil spill exposure and birth outcomes among southern Louisiana women at the time of the Gulf oil spill: The GROWH study. Harville, Emily W; Shankar, Arti; Buekens, Pierre; Wickliffe, Jeffrey K; Lichtveld, Maureen Y International journal of hygiene and environmental health 34450543 2021 Aug
Brain Structure and Degeneration Staging in Friedreich Ataxia: Magnetic Resonance Imaging Volumetrics from the ENIGMA-Ataxia Working Group. Harding, Ian H; Chopra, Sidhant; Arrigoni, Filippo; Boesch, Sylvia; Brunetti, Arturo; Cocozza, Sirio; Corben, Louise A; Deistung, Andreas; Delatycki, Martin; Diciotti, Stefano; Dogan, Imis; Evangelisti, Stefania; França Jr, Marcondes C; Göricke, Sophia L; Georgiou-Karistianis, Nellie; Gramegna, Laura L; Henry, Pierre-Gilles; Hernandez-Castillo, Carlos R; Hutter, Diane; Jahanshad, Neda; Joers, James M; Lenglet, Christophe; Lodi, Raffaele; Manners, David N; Martinez, Alberto R M; Martinuzzi, Andrea; Marzi, Chiara; Mascalchi, Mario; Nachbauer, Wolfgang; Pane, Chiara; Peruzzo, Denis; Pisharady, Pramod K; Pontillo, Giuseppe; Reetz, Kathrin; Rezende, Thiago J R; Romanzetti, Sandro; Saccà, Francesco; Scherfler, Christoph; Schulz, Jörg B; Stefani, Ambra; Testa, Claudia; Thomopoulos, Sophia I; Timmann, Dagmar; Tirelli, Stefania; Tonon, Caterina; Vavla, Marinela; Egan, Gary F; Thompson, Paul M Annals of neurology 34435700 2021 10
INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants. Dong, Chenyang; Simonett, Shane P; Shin, Sunyoung; Stapleton, Donnie S; Schueler, Kathryn L; Churchill, Gary A; Lu, Leina; Liu, Xiaoxiao; Jin, Fulai; Li, Yan; Attie, Alan D; Keller, Mark P; Keleş, Sündüz Genome biology 34425882 2021 08 23
Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis. Aygün, Nil; Elwell, Angela L; Liang, Dan; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Mory, Jessica; Hadden-Ford, Ellie; Krupa, Oleh; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Love, Michael I; Stein, Jason L American journal of human genetics 34416157 2021 09 02
Multi-PheWAS intersection approach to identify sex differences across comorbidities in 59 140 pediatric patients with autism spectrum disorder. Gutiérrez-Sacristán, Alba; Sáez, Carlos; De Niz, Carlos; Jalali, Niloofar; DeSain, Thomas N; Kumar, Ranjay; Zachariasse, Joany M; Fox, Kathe P; Palmer, Nathan; Kohane, Isaac; Avillach, Paul Journal of the American Medical Informatics Association : JAMIA 34405856 2022 Jan 12
Learning Invariant Representations using Inverse Contrastive Loss. Akash, Aditya Kumar; Lokhande, Vishnu Suresh; Ravi, Sathya N; Singh, Vikas Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence 34405058 2021 Feb
Deep reinforcement learning for modeling human locomotion control in neuromechanical simulation. Song, Seungmoon; Kidziński, Łukasz; Peng, Xue Bin; Ong, Carmichael; Hicks, Jennifer; Levine, Sergey; Atkeson, Christopher G; Delp, Scott L Journal of neuroengineering and rehabilitation 34399772 2021 08 16
A systems-level analysis highlights microglial activation as a modifying factor in common epilepsies. Altmann, Andre; Ryten, Mina; Di Nunzio, Martina; Ravizza, Teresa; Tolomeo, Daniele; Reynolds, Regina H; Somani, Alyma; Bacigaluppi, Marco; Iori, Valentina; Micotti, Edoardo; Di Sapia, Rossella; Cerovic, Milica; Palma, Eleonora; Ruffolo, Gabriele; Botía, Juan A; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bargallo, Nuria; Bartolini, Emanuele; Bender, Benjamin; Bergo, Felipe P G; Bernardes, Tauana; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris C; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carlson, Chad; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Chen, Jian; Chen, Shuai; Cherubini, Andrea; Concha, Luis; David, Philippe; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Focke, Niels K; Foley, Sonya; Franca, Wendy; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Hibar, Derrek P; Isaev, Dmitry; Jackson, Graeme D; Jahanshad, Neda; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Kwan, Patrick; Labate, Angelo; Langner, Soenke; Lenge, Matteo; Liu, Min; Martin, Pascal; Mascalchi, Mario; Meletti, Stefano; Morita-Sherman, Marcia E; O'Brien, Terence J; Pariente, Jose C; Richardson, Mark P; Rodriguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Striano, Pasquale; Thesen, Thomas; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Wiest, Roland; Yasuda, Clarissa L; Zhang, Guohao; Zhang, Junsong; ENIGMA-Epilepsy Working Group; Leu, Costin; Avbersek, Andreja; EpiPGX Consortium; Thom, Maria; Whelan, Christopher D; Thompson, Paul; McDonald, Carrie R; Vezzani, Annamaria; Sisodiya, Sanjay M Neuropathology and applied neurobiology 34388852 2022 02
A merged microarray meta-dataset for transcriptionally profiling colorectal neoplasm formation and progression. Rohr, Michael; Beardsley, Jordan; Nakkina, Sai Preethi; Zhu, Xiang; Aljabban, Jihad; Hadley, Dexter; Altomare, Deborah Scientific data 34381057 2021 Aug 11
Continually Modeling Alzheimer's Disease Progression via Deep Multi-Order Preserving Weight Consolidation. Zhang, Jie; Wang, Yalin Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 34378008 2019 Oct
Sense2Stop: A micro-randomized trial using wearable sensors to optimize a just-in-time-adaptive stress management intervention for smoking relapse prevention. Battalio, Samuel L; Conroy, David E; Dempsey, Walter; Liao, Peng; Menictas, Marianne; Murphy, Susan; Nahum-Shani, Inbal; Qian, Tianchen; Kumar, Santosh; Spring, Bonnie Contemporary clinical trials 34375749 2021 10
Testing the effectiveness of community-engaged citizen science to promote physical activity, foster healthier neighborhood environments, and advance health equity in vulnerable communities: The Steps for Change randomized controlled trial design and metho King, Abby C; Campero, Maria I; Garcia, Dulce; Blanco-Velazquez, Isela; Banchoff, Ann; Fierros, Fernando; Escobar, Michele; Cortes, Ana L; Sheats, Jylana L; Hua, Jenna; Chazaro, Aldo; Done, Monica; Espinosa, Patricia Rodriguez; Vuong, Daniel; Ahn, David K Contemporary clinical trials 34371162 2021 Sep
Inferring and Comparing Game Difficulty Curves using Player-vs-Level Match Data. Sarkar, Anurag; Cooper, Seth IEEE Conference on Games 2019 : London, United Kingdom, 20-23 August 2019 34355222 2019 Aug
Artificial intelligence for classification of temporal lobe epilepsy with ROI-level MRI data: A worldwide ENIGMA-Epilepsy study. Gleichgerrcht, Ezequiel; Munsell, Brent C; Alhusaini, Saud; Alvim, Marina K M; Bargalló, Núria; Bender, Benjamin; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris; Blackmon, Karen; Caligiuri, Maria Eugenia; Cendes, Fernando; Concha, Luis; Desmond, Patricia M; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Duncan, John S; Focke, Niels K; Gambardella, Antonio; Gong, Bo; Guerrini, Renzo; Hatton, Sean N; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kotikalapudi, Raviteja; Kreilkamp, Barbara A K; Labate, Angelo; Langner, Soenke; Larivière, Sara; Lenge, Matteo; Lui, Elaine; Martin, Pascal; Mascalchi, Mario; Meletti, Stefano; O'Brien, Terence J; Pardoe, Heath R; Pariente, Jose C; Xian Rao, Jun; Richardson, Mark P; Rodríguez-Cruces, Raúl; Rüber, Theodor; Sinclair, Ben; Soltanian-Zadeh, Hamid; Stein, Dan J; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Elisabetta Vaudano, Anna; Vivash, Lucy; von Podewills, Felix; Vos, Sjoerd B; Weber, Bernd; Yao, Yi; Lin Yasuda, Clarissa; Zhang, Junsong; Thompson, Paul M; Sisodiya, Sanjay M; McDonald, Carrie R; Bonilha, Leonardo; ENIGMA-Epilepsy Working Group NeuroImage. Clinical 34339947 2021
Indirectly-Supervised Anomaly Detection of Clinically-Meaningful Health Events from Smart Home Data. Dahmen, Jessamyn; Cook, Diane J ACM transactions on intelligent systems and technology 34336375 2021 Mar
A Survey of Unsupervised Deep Domain Adaptation. Wilson, Garrett; Cook, Diane J ACM transactions on intelligent systems and technology 34336374 2020 Sep
Are Sex Differences in Human Brain Structure Associated With Sex Differences in Behavior? van Eijk, Liza; Zhu, Dajiang; Couvy-Duchesne, Baptiste; Strike, Lachlan T; Lee, Anthony J; Hansell, Narelle K; Thompson, Paul M; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margaret J; Zietsch, Brendan P Psychological science 34323639 2021 08
The mobile assistance for regulating smoking (MARS) micro-randomized trial design protocol. Nahum-Shani, Inbal; Potter, Lindsey N; Lam, Cho Y; Yap, Jamie; Moreno, Alexander; Stoffel, Rebecca; Wu, Zhenke; Wan, Neng; Dempsey, Walter; Kumar, Santosh; Ertin, Emre; Murphy, Susan A; Rehg, James M; Wetter, David W Contemporary clinical trials 34314855 2021 11
Large-scale collaboration in ENIGMA-EEG: A perspective on the meta-analytic approach to link neurological and psychiatric liability genes to electrophysiological brain activity. Smit, Dirk J A; Andreassen, Ole A; Boomsma, Dorret I; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Elvsåshagen, Torbjørn; Gordon, Reyna L; Harper, Jeremy; Hegerl, Ulrich; Hensch, Tilman; Iacono, William G; Jawinski, Philippe; Jönsson, Erik G; Lu Brain and behavior 34291596 2021 08
International Multicenter Analysis of Brain Structure Across Clinical Stages of Parkinson's Disease. Laansma, Max A; Bright, Joanna K; Al-Bachari, Sarah; Anderson, Tim J; Ard, Tyler; Assogna, Francesca; Baquero, Katherine A; Berendse, Henk W; Blair, Jamie; Cendes, Fernando; Dalrymple-Alford, John C; de Bie, Rob M A; Debove, Ines; Dirkx, Michiel F; Druzgal, Jason; Emsley, Hedley C A; Garraux, Gäetan; Guimarães, Rachel P; Gutman, Boris A; Helmich, Rick C; Klein, Johannes C; Mackay, Clare E; McMillan, Corey T; Melzer, Tracy R; Parkes, Laura M; Piras, Fabrizio; Pitcher, Toni L; Poston, Kathleen L; Rango, Mario; Ribeiro, Letícia F; Rocha, Cristiane S; Rummel, Christian; Santos, Lucas S R; Schmidt, Reinhold; Schwingenschuh, Petra; Spalletta, Gianfranco; Squarcina, Letizia; van den Heuvel, Odile A; Vriend, Chris; Wang, Jiun-Jie; Weintraub, Daniel; Wiest, Roland; Yasuda, Clarissa L; Jahanshad, Neda; Thompson, Paul M; van der Werf, Ysbrand D; ENIGMA-Parkinson's Study Movement disorders : official journal of the Movement Disorder Society 34288137 2021 Nov
Effects of eight neuropsychiatric copy number variants on human brain structure. Modenato, Claudia; Kumar, Kuldeep; Moreau, Clara; Martin-Brevet, Sandra; Huguet, Guillaume; Schramm, Catherine; Jean-Louis, Martineau; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Douard, Elise; Thébault-Dagher, Fanny; Côté, Valérie; Charlebois, Audrey-Rose; Deguire, Florence; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurèlie; Richetin, Sonia; 16p11.2 European Consortium; Simons Searchlight Consortium; Melie-Garcia, Lester; Kushan, Leila; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Chakravarty, Mallar; Bzdok, Danilo; Bearden, Carrie E; Draganski, Bogdan; Jacquemont, Sébastien Translational psychiatry 34285187 2021 07 20
FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics. Levinson, Maxwell Adam; Niestroy, Justin; Al Manir, Sadnan; Fairchild, Karen; Lake, Douglas E; Moorman, J Randall; Clark, Timothy Neuroinformatics 34264488 2021 Jul 15
Sensing leg movement enhances wearable monitoring of energy expenditure. Slade, Patrick; Kochenderfer, Mykel J; Delp, Scott L; Collins, Steven H Nature communications 34257310 2021 07 13
Haplotype-based membership inference from summary genomic data. Bu, Diyue; Wang, Xiaofeng; Tang, Haixu Bioinformatics (Oxford, England) 34252973 2021 07 12
Published anti-SARS-CoV-2 in vitro hits share common mechanisms of action that synergize with antivirals. Xing, Jing; Paithankar, Shreya; Liu, Ke; Uhl, Katie; Li, Xiaopeng; Ko, Meehyun; Kim, Seungtaek; Haskins, Jeremy; Chen, Bin Briefings in bioinformatics 34245241 2021 Jul 09
Standardization of assay representation in the Ontology for Biomedical Investigations. Vita, Randi; Zheng, Jie; Jackson, Rebecca; Dooley, Damion; Overton, James A; Miller, Mark A; Berrios, Daniel C; Scheuermann, Richard H; He, Yongqun; McGinty, Hande Küçük; Brochhausen, Mathias; Lin, Aisyah Yu; Jain, Sagar B; Chibucos, Marcus C; Judkins, John; Giglio, Michelle G; Feng, Irene Y; Burns, Gully; Brush, Matthew H; Peters, Bjoern; Stoeckert Jr, Christian J Database : the journal of biological databases and curation 34244718 2021 07 09
Quick-start infrastructure for untargeted metabolomics analysis in GNPS. Leao, Tiago F; Clark, Chase M; Bauermeister, Anelize; Elijah, Emmanuel O; Gentry, Emily C; Husband, Makhai; Oliveira, Michelli F; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C Nature metabolism 34244695 2021 07
Causal Inference Gates Corticostriatal Learning. Dorfman, Hayley M; Tomov, Momchil S; Cheung, Bernice; Clarke, Dennis; Gershman, Samuel J; Hughes, Brent L The Journal of neuroscience : the official journal of the Society for Neuroscience 34244363 2021 Aug 11
Regulations and Norms for Reuse of Residual Clinical Biospecimens and Health Data. Umberfield, Elizabeth E; Kardia, Sharon L R; Jiang, Yun; Thomer, Andrea K; Harris, Marcelline R Western journal of nursing research 34238076 2021 Jul 08
A critical overview of computational approaches employed for COVID-19 drug discovery. Muratov , Eugene N; Amaro , Rommie; Andrade , Carolina H; Brown , Nathan; Ekins , Sean; Fourches , Denis; Isayev , Olexandr; Kozakov , Dima; Medina-Franco , José L; Merz , Kenneth M; Oprea , Tudor I; Poroikov , Vladimir; Schneider , Gisbert; Todd , Matthew H; Varnek , Alexandre; Winkler , David A; Zakharov , Alexey V; Cherkasov , Artem; Tropsha , Alexander Chemical Society reviews 34212944 2021 Aug 21
The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets. Larivière, Sara; Paquola, Casey; Park, Bo-Yong; Royer, Jessica; Wang, Yezhou; Benkarim, Oualid; Vos de Wael, Reinder; Valk, Sofie L; Thomopoulos, Sophia I; Kirschner, Matthias; Lewis, Lindsay B; Evans, Alan C; Sisodiya, Sanjay M; McDonald, Carrie R; Thompson, Paul M; Bernhardt, Boris C Nature methods 34194050 2021 Jul
Universal Spectrum Identifier for mass spectra. Deutsch, Eric W; Perez-Riverol, Yasset; Carver, Jeremy; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Binz, Pierre-Alain; Pullman, Benjamin; Sun, Zhi; Shofstahl, Jim; Bittremieux, Wout; Mak, Tytus D; Klein, Joshua; Zhu, Yunping; Lam, Henry; Vizcaíno, Juan Antonio; Bandeira, Nuno Nature methods 34183830 2021 Jul
Brain Correlates of Suicide Attempt in 18,925 Participants Across 18 International Cohorts. Campos, Adrian I; Thompson, Paul M; Veltman, Dick J; Pozzi, Elena; van Veltzen, Laura S; Jahanshad, Neda; Adams, Mark J; Baune, Bernhard T; Berger, Klaus; Brosch, Katharina; Bülow, Robin; Connolly, Colm G; Dannlowski, Udo; Davey, Christopher G; de Zubicaray, Greig I; Dima, Danai; Erwin-Grabner, Tracy; Evans, Jennifer W; Fu, Cynthia H Y; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans J; Grotegerd, Dominik; Harris, Matthew A; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Ho, Tiffany C; Kircher, Tilo; Krug, Axel; Lagopoulos, Jim; Lemke, Hannah; McMahon, Katie; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; Medland, Sarah E; Meinert, Susanne; Meller, Tina; Nenadic, Igor; Opel, Nils; Redlich, Ronny; Reneman, Liesbeth; Repple, Jonathan; Sacchet, Matthew D; Schmitt, Simon; Schrantee, Anouk; Sim, Kang; Singh, Aditya; Stein, Frederike; Strike, Lachlan T; van der Wee, Nic J A; van der Werff, Steven J A; Völzke, Henry; Waltemate, Lena; Whalley, Heather C; Wittfeld, Katharina; Wright, Margaret J; Yang, Tony T; Zarate, Carlos A; Schmaal, Lianne; Rentería, Miguel E; ENIGMA-MDD Working Group Biological psychiatry 34172278 2021 08 15
ReVibe: A Context-assisted Evening Recall Approach to Improve Self-report Adherence. Rabbi, Mashfiqui; Li, Katherine; Yan, H Yanna; Hall, Kelly; Klasnja, Predrag; Murphy, Susan Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies 34164595 2019 Dec
Lessons Learned for Identifying and Annotating Permissions in Clinical Consent Forms. Umberfield, Elizabeth E; Jiang, Yun; Fenton, Susan H; Stansbury, Cooper; Ford, Kathleen; Crist, Kaycee; Kardia, Sharon L R; Thomer, Andrea K; Harris, Marcelline R Applied clinical informatics 34161986 2021 05
Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses. Moon, Changsung; Jin, Chunming; Dong, Xialan; Abrar, Saad; Zheng, Weifan; Chirkova, Rada Y; Tropsha, Alexander Journal of biomedical informatics 34119691 2021 07
Automated Detection of Stressful Conversations Using Wearable Physiological and Inertial Sensors. Bari, Rummana; Rahman, Md Mahbubur; Saleheen, Nazir; Parsons, Megan Battles; Buder, Eugene H; Kumar, Santosh Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies 34099995 2020 Dec
Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging. Ning, Kaida; Duffy, Ben A; Franklin, Meredith; Matloff, Will; Zhao, Lu; Arzouni, Nibal; Sun, Fengzhu; Toga, Arthur W Neurobiology of aging 34098431 2021 09
Multimodal EEG-fMRI: advancing insight into large-scale human brain dynamics. Chang, Catie; Chen, Jingyuan E Current opinion in biomedical engineering 34095643 2021 Jun
Optimizing Nondecomposable Data Dependent Regularizers via Lagrangian Reparameterization Offers Significant Performance and Efficiency Gains. Ravi, Sathya N; Venkatesh, Abhay; Fung, Glenn M; Singh, Vikas Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence 34094697 2020 Jun 16
Rare variants regulate expression of nearby individual genes in multiple tissues. Li, Jiajin; Kong, Nahyun; Han, Buhm; Sul, Jae Hoon PLoS genetics 34061836 2021 06
Fibroblasts positive for meflin have anti-fibrotic properties in pulmonary fibrosis. Nakahara, Yoshio; Hashimoto, Naozumi; Sakamoto, Koji; Enomoto, Atsushi; Adams, Taylor S; Yokoi, Toyoharu; Omote, Norihito; Poli, Sergio; Ando, Akira; Wakahara, Keiko; Suzuki, Atsushi; Inoue, Masahide; Hara, Akitoshi; Mizutani, Yasuyuki; Imaizumi, Kazuyoshi; Kawabe, Tsutomu; Rosas, Ivan O; Takahashi, Masahide; Kaminski, Naftali; Hasegawa, Yoshinori The European respiratory journal 34049947 2021 12
Interaction Between SNP Genotype and Efficacy of Anastrozole and Exemestane in Early-Stage Breast Cancer. Cairns, Junmei; Kalari, Krishna R; Ingle, James N; Shepherd, Lois E; Ellis, Matthew J; Goss, Paul E; Barman, Poulami; Carlson, Erin E; Goodnature, Barbara; Goetz, Matthew P; Weinshilboum, Richard M; Gao, Huanyao; Wang, Liewei Clinical pharmacology and therapeutics 34048027 2021 May 28
Wearable sensors enable personalized predictions of clinical laboratory measurements. Dunn, Jessilyn; Kidzinski, Lukasz; Runge, Ryan; Witt, Daniel; Hicks, Jennifer L; Schüssler-Fiorenza Rose, Sophia Miryam; Li, Xiao; Bahmani, Amir; Delp, Scott L; Hastie, Trevor; Snyder, Michael P Nature medicine 34031607 2021 Jun
What Does the Evidence Say? Models to Help Make Sense of the Biomedical Literature. Wallace, Byron C IJCAI : proceedings of the conference 34025086 2019 Aug
KEA3: improved kinase enrichment analysis via data integration. Kuleshov, Maxim V; Xie, Zhuorui; London, Alexandra B K; Yang, Janice; Evangelista, John Erol; Lachmann, Alexander; Shu, Ingrid; Torre, Denis; Ma'ayan, Avi Nucleic acids research 34019655 2021 07 02
Morphological Development Trajectory and Structural Covariance Network of the Human Fetal Cortical Plate during the Early Second Trimester. Xu, Feifei; Liu, Mengting; Kim, Sharon Y; Ge, Xinting; Zhang, Zhonghe; Tang, Yuchun; Lin, Xiangtao; Toga, Arthur W; Liu, Shuwei; Kim, Hosung Cerebral cortex (New York, N.Y. : 1991) 34017979 2021 08 26
Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation. Liang, Dan; Elwell, Angela L; Aygün, Nil; Krupa, Oleh; Wolter, Justin M; Kyere, Felix A; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Yusupova, Marianna; Garrett, Melanie E; Ashley-Koch, Allison; Crawford, Gregory E; Love, Michael I; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Stein, Jason L Nature neuroscience 34017130 2021 Jul
The SistematX Web Portal of Natural Products: An Update. Costa, Renan P O; Lucena, Lucas F; Silva, Lorena Mara A; Zocolo, Guilherme Julião; Herrera-Acevedo, Chonny; Scotti, Luciana; Da-Costa, Fernando Batista; Ionov, Nikita; Poroikov, Vladimir; Muratov, Eugene N; Scotti, Marcus T Journal of chemical information and modeling 34014674 2021 06 28
Testing the extreme male brain hypothesis: Is autism spectrum disorder associated with a more male-typical brain? van Eijk, Liza; Zietsch, Brendan P Autism research : official journal of the International Society for Autism Research 34008924 2021 08
Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR): Holistic Approach to Unravel Antibacterial Resistance in East Africa (HATUA). Asiimwe, Benon B; Kiiru, John; Mshana, Stephen E; Neema, Stella; Keenan, Katherine; Kesby, Mike; Mwanga, Joseph R; Sloan, Derek J; Mmbaga, Blandina T; Smith, V Anne; Gillespie, Stephen H; Lynch, Andy G; Sandeman, Alison; Stelling, John; Elliott, Alison; Aanensen, David M; Kibiki, Gibson E; Sabiiti, Wilber; Holden, Matthew T G; HATUA Consortium BMJ open 34006022 2021 03 08
Mobile Health: making the leap to research and clinics. Ku, Joy P; Sim, Ida NPJ digital medicine 33990671 2021 May 14
Interaction of amyloid and tau on cortical microstructure in cognitively unimpaired adults. Vogt, Nicholas M; Hunt, Jack F V; Adluru, Nagesh; Ma, Yue; Van Hulle, Carol A; Iii, Douglas C Dean; Kecskemeti, Steven R; Chin, Nathaniel A; Carlsson, Cynthia M; Asthana, Sanjay; Johnson, Sterling C; Kollmorgen, Gwendlyn; Batrla, Richard; Wild, Norbert; Buck, Katharina; Zetterberg, Henrik; Alexander, Andrew L; Blennow, Kaj; Bendlin, Barbara B Alzheimer's & dementia : the journal of the Alzheimer's Association 33984184 2021 May 13
The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols. Yuen, Denis; Cabansay, Louise; Duncan, Andrew; Luu, Gary; Hogue, Gregory; Overbeck, Charles; Perez, Natalie; Shands, Walt; Steinberg, David; Reid, Chaz; Olunwa, Nneka; Hansen, Richard; Sheets, Elizabeth; O'Farrell, Ash; Cullion, Kim; O'Connor, Brian D; Paten, Benedict; Stein, Lincoln Nucleic acids research 33978761 2021 07 02
Three-dimensional self-attention conditional GAN with spectral normalization for multimodal neuroimaging synthesis. Lan, Haoyu; Alzheimer Disease Neuroimaging Initiative; Toga, Arthur W; Sepehrband, Farshid Magnetic resonance in medicine 33961321 2021 09
fMRI-based detection of alertness predicts behavioral response variability. Goodale, Sarah E; Ahmed, Nafis; Zhao, Chong; de Zwart, Jacco A; Özbay, Pinar S; Picchioni, Dante; Duyn, Jeff; Englot, Dario J; Morgan, Victoria L; Chang, Catie eLife 33960930 2021 May 07
Endocannabinoid Gene × Gene Interaction Association to Alcohol Use Disorder in Two Adolescent Cohorts. Elkrief, Laurent; Spinney, Sean; Vosberg, Daniel E; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Pausova, Zdenka; Paus, Tomáš; Huguet, Guillaume; Conrod, Patricia; IMAGEN consortium Frontiers in psychiatry 33959052 2021
White matter hyperintensities segmentation using the ensemble U-Net with multi-scale highlighting foregrounds. Park, Gilsoon; Hong, Jinwoo; Duffy, Ben A; Lee, Jong-Min; Kim, Hosung NeuroImage 33957235 2021 08 15
A high-quality bonobo genome refines the analysis of hominid evolution. Mao, Yafei; Catacchio, Claudia R; Hillier, LaDeana W; Porubsky, David; Li, Ruiyang; Sulovari, Arvis; Fernandes, Jason D; Montinaro, Francesco; Gordon, David S; Storer, Jessica M; Haukness, Marina; Fiddes, Ian T; Murali, Shwetha Canchi; Dishuck, Philip C; Hsieh, PingHsun; Harvey, William T; Audano, Peter A; Mercuri, Ludovica; Piccolo, Ilaria; Antonacci, Francesca; Munson, Katherine M; Lewis, Alexandra P; Baker, Carl; Underwood, Jason G; Hoekzema, Kendra; Huang, Tzu-Hsueh; Sorensen, Melanie; Walker, Jerilyn A; Hoffman, Jinna; Thibaud-Nissen, Françoise; Salama, Sofie R; Pang, Andy W C; Lee, Joyce; Hastie, Alex R; Paten, Benedict; Batzer, Mark A; Diekhans, Mark; Ventura, Mario; Eichler, Evan E Nature 33953399 2021 May 05
Sex is a defining feature of neuroimaging phenotypes in major brain disorders. Salminen, Lauren E; Tubi, Meral A; Bright, Joanna; Thomopoulos, Sophia I; Wieand, Alyssa; Thompson, Paul M Human brain mapping 33949018 2021 May 05
The digital biomarker discovery pipeline: An open-source software platform for the development of digital biomarkers using mHealth and wearables data. Bent, Brinnae; Wang, Ke; Grzesiak, Emilia; Jiang, Chentian; Qi, Yuankai; Jiang, Yihang; Cho, Peter; Zingler, Kyle; Ogbeide, Felix Ikponmwosa; Zhao, Arthur; Runge, Ryan; Sim, Ida; Dunn, Jessilyn Journal of clinical and translational science 33948242 2020 Jul 14
Exploring JSON-LD as an Executable Definition of FHIR RDF to Enable. Solbrig, Harold R; Solbrig, Harold R; Prud'hommeaux, Eric; Booth, David; Endle, Cory M; Stone, Daniel J; Jiang, Guoqian AMIA ... Annual Symposium proceedings. AMIA Symposium 33936490 2020
Patient-Specific Modeling with Personalized Decision Paths. Johnson, Adriana; Cooper, Gregory F; Visweswaran, Shyam AMIA ... Annual Symposium proceedings. AMIA Symposium 33936434 2020
Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data. Brown, Katherine A; Sarkar, Indra Neil; Chen, Elizabeth S AMIA ... Annual Symposium proceedings. AMIA Symposium 33936398 2020
Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Gau, Rémi; Noble, Stephanie; Heuer, Katja; Bottenhorn, Katherine L; Bilgin, Isil P; Yang, Yu-Fang; Huntenburg, Julia M; Bayer, Johanna M M; Bethlehem, Richard A I; Rhoads, Shawn A; Vogelbacher, Christoph; Borghesani, Valentina; Levitis, Elizabeth; Wang, Hao-Ting; Van Den Bossche, Sofie; Kobeleva, Xenia; Legarreta, Jon Haitz; Guay, Samuel; Atay, Selim Melvin; Varoquaux, Gael P; Huijser, Dorien C; Sandström, Malin S; Herholz, Peer; Nastase, Samuel A; Badhwar, AmanPreet; Dumas, Guillaume; Schwab, Simon; Moia, Stefano; Dayan, Michael; Bassil, Yasmine; Brooks, Paula P; Mancini, Matteo; Shine, James M; O'Connor, David; Xie, Xihe; Poggiali, Davide; Friedrich, Patrick; Heinsfeld, Anibal S; Riedl, Lydia; Toro, Roberto; Caballero-Gaudes, César; Eklund, Anders; Garner, Kelly G; Nolan, Christopher R; Demeter, Damion V; Barrios, Fernando A; Merchant, Junaid S; McDevitt, Elizabeth A; Oostenveld, Robert; Craddock, R Cameron; Rokem, Ariel; Doyle, Andrew; Ghosh, Satrajit S; Nikolaidis, Aki; Stanley, Olivia W; Uruñuela, Eneko; Brainhack Community Neuron 33932337 2021 06 02
Multi-task Dictionary Learning based on Convolutional Neural Networks for Longitudinal Clinical Score Predictions in Alzheimer's Disease. Dong, Qunxi; Zhang, Jie; Li, Qingyang; Thompson, Pau M; Caselli, Richard J; Ye, Jieping; Wang, Yalin; Alzheimers Disease Neuroimaging Initiative Human brain and artificial intelligence : first International Workshop, HBAI 2019, held in conjunction with IJCAI 2019, Macao, China, August 12, 2019, revised selected papers. HBAI (Conference) (1st : 2019 : Macau, China) 33907742 2019
Altered regional cerebral blood flow in obstructive sleep apnea is associated with sleep fragmentation and oxygen desaturation. Yan, Lirong; Park, Hea Ree; Kezirian, Eric J; Yook, Soonhyun; Kim, Jae-Hun; Joo, Eun Yeon; Kim, Hosung Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 33906511 2021 10
Reward Processing in Novelty Seekers: A Transdiagnostic Psychiatric Imaging Biomarker. Qi, Shile; Schumann, Gunter; Bustillo, Juan; Turner, Jessica A; Jiang, Rongtao; Zhi, Dongmei; Fu, Zening; Mayer, Andrew R; Vergara, Victor M; Silva, Rogers F; Iraji, Armin; Chen, Jiayu; Damaraju, Eswar; Ma, Xiaohong; Yang, Xiao; Stevens, Michael; Mathalon, Daniel H; Ford, Judith M; Voyvodic, James; Mueller, Bryon A; Belger, Aysenil; Potkin, Steven G; Preda, Adrian; Zhuo, Chuanjun; Xu, Yong; Chu, Congying; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Calhoun, Vince D; Sui, Jing; IMAGEN Consortium Biological psychiatry 33875230 2021 Oct 15
A Full RNS Variant of Approximate Homomorphic Encryption. Cheon, Jung Hee; Han, Kyoohyung; Kim, Andrey; Kim, Miran; Song, Yongsoo Selected areas in cryptography : ... annual international workshop, SAC ... proceedings. SAC (Conference) 33870337 2018
Geometric Brain Surface Network For Brain Cortical Parcellation. Zhang, Wen; Wang, Yalin Graph Learning in Medical Imaging : First International Workshop, GLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 17, 2019, Proceedings 33870335 2019
THE STRATIFIED MICRO-RANDOMIZED TRIAL DESIGN: SAMPLE SIZE CONSIDERATIONS FOR TESTING NESTED CAUSAL EFFECTS OF TIME-VARYING TREATMENTS. Dempsey, Walter; Liao, Peng; Kumar, Santosh; Murphy, Susan A The annals of applied statistics 33868539 2020 Jun
Association between body mass index and subcortical brain volumes in bipolar disorders-ENIGMA study in 2735 individuals. McWhinney, Sean R; Abé, Christoph; Alda, Martin; Benedetti, Francesco; Bøen, Erlend; Del Mar Bonnin, Caterina; Borgers, Tiana; Brosch, Katharina; Canales-Rodríguez, Erick J; Cannon, Dara M; Dannlowski, Udo; Díaz-Zuluaga, Ana M; Elvsåshagen, Torbjørn; Eyler, Lisa T; Fullerton, Janice M; Goikolea, Jose M; Goltermann, Janik; Grotegerd, Dominik; Haarman, Bartholomeus C M; Hahn, Tim; Howells, Fleur M; Ingvar, Martin; Kircher, Tilo T J; Krug, Axel; Kuplicki, Rayus T; Landén, Mikael; Lemke, Hannah; Liberg, Benny; Lopez-Jaramillo, Carlos; Malt, Ulrik F; Martyn, Fiona M; Mazza, Elena; McDonald, Colm; McPhilemy, Genevieve; Meier, Sandra; Meinert, Susanne; Meller, Tina; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadic, Igor; Opel, Nils; Ophoff, Roel A; Overs, Bronwyn J; Pfarr, Julia-Katharina; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Raduà, Joaquim; Repple, Jonathan; Richter, Maike; Ringwald, Kai G; Roberts, Gloria; Salvador, Raymond; Savitz, Jonathan; Schmitt, Simon; Schofield, Peter R; Sim, Kang; Stein, Dan J; Stein, Frederike; Temmingh, Henk S; Thiel, Katharina; van Haren, Neeltje E M; Gestel, Holly Van; Vargas, Cristian; Vieta, Eduard; Vreeker, Annabel; Waltemate, Lena; Yatham, Lakshmi N; Ching, Christopher R K; Andreassen, Ole; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group Molecular psychiatry 33863996 2021 Nov
Social cognition in 22q11.2 deletion syndrome and idiopathic developmental neuropsychiatric disorders. Jalal, Rhideeta; Nair, Aarti; Lin, Amy; Eckfeld, Ariel; Kushan, Leila; Zinberg, Jamie; Karlsgodt, Katherine H; Cannon, Tyrone D; Bearden, Carrie E Journal of neurodevelopmental disorders 33863277 2021 04 17
Large-Scale Analysis of Visualization Options in a Citizen Science Game. Miller, Josh Aaron; Lee, Vivian; Cooper, Seth; El-Nasr, Magy Seif Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play 33860290 2019 Oct
Social Media Activism and Convergence in Tweet Topics After the Initial #MeToo Movement for Two Distinct Groups of Twitter Users. Baik, Jason M; Nyein, Thet H; Modrek, Sepideh Journal of interpersonal violence 33840303 2021 Apr 12
Artificial intelligence decision-making in mobile health. Menictas, Marianne; Rabbi, Mashfiqui; Klasnja, Predrag; Murphy, Susan The biochemist 33828355 2019 Oct
Associations Between Exposure to Gestational Diabetes Mellitus In Utero and Daily Energy Intake, Brain Responses to Food Cues, and Adiposity in Children. Luo, Shan; Angelo, Brendan C; Chow, Ting; Monterosso, John R; Thompson, Paul M; Xiang, Anny H; Page, Kathleen A Diabetes care 33827804 2021 May
The interaction of child abuse and rs1360780 of the FKBP5 gene is associated with amygdala resting-state functional connectivity in young adults. Wesarg, Christiane; Veer, Ilya M; Oei, Nicole Y L; Daedelow, Laura S; Lett, Tristram A; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Brühl, Rüdiger; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Heinz, Andreas; Walter, Henrik; IMAGEN Consortium Human brain mapping 33818852 2021 Jul
Robust Cortical Thickness Morphometry of Neonatal Brain and Systematic Evaluation Using Multi-Site MRI Datasets. Liu, Mengting; Lepage, Claude; Kim, Sharon Y; Jeon, Seun; Kim, Sun Hyung; Simon, Julia Pia; Tanaka, Nina; Yuan, Shiyu; Islam, Tasfiya; Peng, Bailin; Arutyunyan, Knarik; Surento, Wesley; Kim, Justin; Jahanshad, Neda; Styner, Martin A; Toga, Arthur W; Barkovich, Anthony James; Xu, Duan; Evans, Alan C; Kim, Hosung Frontiers in neuroscience 33815050 2021
Off-Policy Estimation of Long-Term Average Outcomes with Applications to Mobile Health. Liao, Peng; Klasnja, Predrag; Murphy, Susan Journal of the American Statistical Association 33814653 2021
Structural and functional brain alterations revealed by neuroimaging in CNV carriers. Moreau, Clara A; Ching, Christopher Rk; Kumar, Kuldeep; Jacquemont, Sebastien; Bearden, Carrie E Current opinion in genetics & development 33812299 2021 06
Multi-Resemblance Multi-Target Low-Rank Coding for Prediction of Cognitive Decline With Longitudinal Brain Images. Zhang, Jie; Wu, Jianfeng; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin IEEE transactions on medical imaging 33798076 2021 08
Characterizing neuroanatomic heterogeneity in people with and without ADHD based on subcortical brain volumes. Li, Ting; van Rooij, Daan; Roth Mota, Nina; Buitelaar, Jan K; ENIGMA ADHD Working Group; Hoogman, Martine; Arias Vasquez, Alejandro; Franke, Barbara Journal of child psychology and psychiatry, and allied disciplines 33786843 2021 Mar 30
Sex differences in neural correlates of common psychopathological symptoms in early adolescence. Biondo, Francesca; Thunell, Charlotte Nymberg; Xu, Bing; Chu, Congying; Jia, Tianye; Ing, Alex; Quinlan, Erin Burke; Tay, Nicole; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Lemaitre, Hervé; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Barker, Edward D; Schumann, Gunter; IMAGEN Consortium Psychological medicine 33769238 2022 Oct
Selective morphological and volumetric alterations in the hippocampus of children exposed in utero to gestational diabetes mellitus. Lynch, Kirsten M; Alves, Jasmin M; Chow, Ting; Clark, Kristi A; Luo, Shan; Toga, Arthur W; Xiang, Anny H; Page, Kathleen A Human brain mapping 33764653 2021 Mar 25
A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: A useful proteomic resource for a versatile pathogen. Reales-Calderón, J A; Sun, Z; Mascaraque, V; Pérez-Navarro, E; Vialás, V; Deutsch, E W; Moritz, R L; Gil, C; Martínez, J L; Molero, G Journal of proteomics 33757883 2021 05 15
Predicting Depression Onset in Young People Based on Clinical, Cognitive, Environmental, and Neurobiological Data. Toenders, Yara J; Kottaram, Akhil; Dinga, Richard; Davey, Christopher G; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Stringaris, Argyris; van Noort, Betteke; Penttilä, Jani; Grimmer, Yvonne; Insensee, Corinna; Becker, Andreas; Schumann, Gunter; IMAGEN Consortium; Schmaal, Lianne Biological psychiatry. Cognitive neuroscience and neuroimaging 33753312 2022 04
Analysis of structural brain asymmetries in attention-deficit/hyperactivity disorder in 39 datasets. Postema, Merel C; Hoogman, Martine; Ambrosino, Sara; Asherson, Philip; Banaschewski, Tobias; Bandeira, Cibele E; Baranov, Alexandr; Bau, Claiton H D; Baumeister, Sarah; Baur-Streubel, Ramona; Bellgrove, Mark A; Biederman, Joseph; Bralten, Janita; Brandeis, Daniel; Brem, Silvia; Buitelaar, Jan K; Busatto, Geraldo F; Castellanos, Francisco X; Cercignani, Mara; Chaim-Avancini, Tiffany M; Chantiluke, Kaylita C; Christakou, Anastasia; Coghill, David; Conzelmann, Annette; Cubillo, Ana I; Cupertino, Renata B; de Zeeuw, Patrick; Doyle, Alysa E; Durston, Sarah; Earl, Eric A; Epstein, Jeffery N; Ethofer, Thomas; Fair, Damien A; Fallgatter, Andreas J; Faraone, Stephen V; Frodl, Thomas; Gabel, Matt C; Gogberashvili, Tinatin; Grevet, Eugenio H; Haavik, Jan; Harrison, Neil A; Hartman, Catharina A; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hohmann, Sarah; Høvik, Marie F; Jernigan, Terry L; Kardatzki, Bernd; Karkashadze, Georgii; Kelly, Clare; Kohls, Gregor; Konrad, Kerstin; Kuntsi, Jonna; Lazaro, Luisa; Lera-Miguel, Sara; Lesch, Klaus-Peter; Louza, Mario R; Lundervold, Astri J; Malpas, Charles B; Mattos, Paulo; McCarthy, Hazel; Namazova-Baranova, Leyla; Nicolau, Rosa; Nigg, Joel T; Novotny, Stephanie E; Oberwelland Weiss, Eileen; O'Gorman Tuura, Ruth L; Oosterlaan, Jaap; Oranje, Bob; Paloyelis, Yannis; Pauli, Paul; Picon, Felipe A; Plessen, Kerstin J; Ramos-Quiroga, J Antoni; Reif, Andreas; Reneman, Liesbeth; Rosa, Pedro G P; Rubia, Katya; Schrantee, Anouk; Schweren, Lizanne J S; Seitz, Jochen; Shaw, Philip; Silk, Tim J; Skokauskas, Norbert; Soliva Vila, Juan C; Stevens, Michael C; Sudre, Gustavo; Tamm, Leanne; Tovar-Moll, Fernanda; van Erp, Theo G M; Vance, Alasdair; Vilarroya, Oscar; Vives-Gilabert, Yolanda; von Polier, Georg G; Walitza, Susanne; Yoncheva, Yuliya N; Zanetti, Marcus V; Ziegler, Georg C; Glahn, David C; Jahanshad, Neda; Medland, Sarah E; ENIGMA ADHD Working Group; Thompson, Paul M; Fisher, Simon E; Franke, Barbara; Francks, Clyde Journal of child psychology and psychiatry, and allied disciplines 33748971 2021 Oct
The role of maternal BMI on brain food cue reactivity in children: a preliminary study. Luo, Shan; Angelo, Brendan; Chow, Ting; Monterosso, John R; Xiang, Anny H; Thompson, Paul M; Page, Kathleen A Brain imaging and behavior 33738669 2021 Mar 18
Assessment of Extractability and Accuracy of Electronic Health Record Data for Joint Implant Registries. Giori, Nicholas J; Radin, John; Callahan, Alison; Fries, Jason A; Halilaj, Eni; Ré, Christopher; Delp, Scott L; Shah, Nigam H; Harris, Alex H S JAMA network open 33720372 2021 03 01
Predicting future cognitive decline with hyperbolic stochastic coding. Zhang, Jie; Dong, Qunxi; Shi, Jie; Li, Qingyang; Stonnington, Cynthia M; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin Medical image analysis 33711742 2021 05
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. Bandeira, Nuno; Deutsch, Eric W; Kohlbacher, Oliver; Martens, Lennart; Vizcaíno, Juan Antonio Molecular & cellular proteomics : MCP 33711481 2021
Unsupervised Word Embedding Learning by Incorporating Local and Global Contexts. Meng, Yu; Huang, Jiaxin; Wang, Guangyuan; Wang, Zihan; Zhang, Chao; Han, Jiawei Frontiers in big data 33693384 2020
The emerging clinical role of wearables: factors for successful implementation in healthcare. Smuck, Matthew; Odonkor, Charles A; Wilt, Jonathan K; Schmidt, Nicolas; Swiernik, Michael A NPJ digital medicine 33692479 2021 Mar 10
Published Anti-SARS-CoV-2 In Vitro Hits Share Common Mechanisms of Action that Synergize with Antivirals. Xing, Jing; Paithankar, Shreya; Liu, Ke; Uhl, Katie; Li, Xiaopeng; Ko, Meehyun; Kim, Seungtaek; Haskins, Jeremy; Chen, Bin bioRxiv : the preprint server for biology 33688643 2021 Mar 04
Differential predictors for alcohol use in adolescents as a function of familial risk. Tschorn, Mira; Lorenz, Robert C; O'Reilly, Paul F; Reichenberg, Abraham; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Heinz, Andreas; Rapp, Michael A; IMAGEN Consortium Translational psychiatry 33664233 2021 Mar 04
Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression. MahmoudianDehkordi, Siamak; Ahmed, Ahmed T; Bhattacharyya, Sudeepa; Han, Xianlin; Baillie, Rebecca A; Arnold, Matthias; Skime, Michelle K; John-Williams, Lisa St; Moseley, M Arthur; Thompson, J Will; Louie, Gregory; Riva-Posse, Patricio; Craighead, W Edward; McDonald, William; Krishnan, Ranga; Rush, A John; Frye, Mark A; Dunlop, Boadie W; Weinshilboum, Richard M; Kaddurah-Daouk, Rima; Mood Disorders Precision Medicine Consortium (MDPMC) Translational psychiatry 33654056 2021 Mar 02
Pattern recognition in lymphoid malignancies using CytoGPS and Mercator. Abrams, Zachary B; Tally, Dwayne G; Zhang, Lin; Coombes, Caitlin E; Payne, Philip R O; Abruzzo, Lynne V; Coombes, Kevin R BMC bioinformatics 33648439 2021 Mar 01
Prioritizing Genetic Contributors to Cortical Alterations in 22q11.2 Deletion Syndrome Using Imaging Transcriptomics. Forsyth, Jennifer K; Mennigen, Eva; Lin, Amy; Sun, Daqiang; Vajdi, Ariana; Kushan-Wells, Leila; Ching, Christopher R K; Villalon-Reina, Julio E; Thompson, Paul M; 22q11.2 ENIGMA Consortium; Bearden, Carrie E Cerebral cortex (New York, N.Y. : 1991) 33638978 2021 06 10
Tobacco use and age are associated with different morphologic features of anterior communicating artery aneurysms. Zhang, Jian; Lai, Pui Man Rosalind; Can, Anil; Mukundan, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose Scientific reports 33637879 2021 02 26
Examination of the association between exposure to childhood maltreatment and brain structure in young adults: a machine learning analysis. Price, Matthew; Albaugh, Matthew; Hahn, Sage; Juliano, Anthony C; Fani, Negar; Brier, Zoe M F; Legrand, Alison C; van Stolk-Cooke, Katherine; Chaarani, Bader; Potter, Alexandra; Peck, Kelly; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 33637836 2021 10
Smoking Cessation Using Wearable Sensors: Protocol for a Microrandomized Trial. Hernandez, Laura M; Wetter, David W; Kumar, Santosh; Sutton, Steven K; Vinci, Christine JMIR research protocols 33625366 2021 Feb 24
Dimension constraints improve hypothesis testing for large-scale, graph-associated, brain-image data. Vo, Tien; Mishra, Akshay; Ithapu, Vamsi; Singh, Vikas; Newton, Michael A Biostatistics (Oxford, England) 33616173 2022 07 18
Effects of copy number variations on brain structure and risk for psychiatric illness: Large-scale studies from the ENIGMA working groups on CNVs. Sønderby, Ida E; Ching, Christopher R K; Thomopoulos, Sophia I; van der Meer, Dennis; Sun, Daqiang; Villalon-Reina, Julio E; Agartz, Ingrid; Amunts, Katrin; Arango, Celso; Armstrong, Nicola J; Ayesa-Arriola, Rosa; Bakker, Geor; Bassett, Anne S; Boomsma, Dorret I; Bülow, Robin; Butcher, Nancy J; Calhoun, Vince D; Caspers, Svenja; Chow, Eva W C; Cichon, Sven; Ciufolini, Simone; Craig, Michael C; Crespo-Facorro, Benedicto; Cunningham, Adam C; Dale, Anders M; Dazzan, Paola; de Zubicaray, Greig I; Djurovic, Srdjan; Doherty, Joanne L; Donohoe, Gary; Draganski, Bogdan; Durdle, Courtney A; Ehrlich, Stefan; Emanuel, Beverly S; Espeseth, Thomas; Fisher, Simon E; Ge, Tian; Glahn, David C; Grabe, Hans J; Gur, Raquel E; Gutman, Boris A; Haavik, Jan; Håberg, Asta K; Hansen, Laura A; Hashimoto, Ryota; Hibar, Derrek P; Holmes, Avram J; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Jalbrzikowski, Maria; Knowles, Emma E M; Kushan, Leila; Linden, David E J; Liu, Jingyu; Lundervold, Astri J; Martin-Brevet, Sandra; Martínez, Kenia; Mather, Karen A; Mathias, Samuel R; McDonald-McGinn, Donna M; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Modenato, Claudia; Monereo Sánchez, Jennifer; Moreau, Clara A; Mühleisen, Thomas W; Paus, Tomas; Pausova, Zdenka; Prieto, Carlos; Ragothaman, Anjanibhargavi; Reinbold, Céline S; Reis Marques, Tiago; Repetto, Gabriela M; Reymond, Alexandre; Roalf, David R; Rodriguez-Herreros, Borja; Rucker, James J; Sachdev, Perminder S; Schmitt, James E; Schofield, Peter R; Silva, Ana I; Stefansson, Hreinn; Stein, Dan J; Tamnes, Christian K; Tordesillas-Gutiérrez, Diana; Ulfarsson, Magnus O; Vajdi, Ariana; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Vázquez-Bourgon, Javier; Vila-Rodriguez, Fidel; Walters, G Bragi; Wen, Wei; Westlye, Lars T; Wittfeld, Katharina; Zackai, Elaine H; Stefánsson, Kári; Jacquemont, Sebastien; Thompson, Paul M; Bearden, Carrie E; Andreassen, Ole A; ENIGMA-CNV Working Group; ENIGMA 22q11.2 Deletion Syndrome Working Group Human brain mapping 33615640 2022 Jan
Cortical thickness across the lifespan: Data from 17,075 healthy individuals aged 3-90 years. Frangou, Sophia; Modabbernia, Amirhossein; Williams, Steven C R; Papachristou, Efstathios; Doucet, Gaelle E; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andersson, Micael; Andreasen, Nancy C; Andreassen, Ole A; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Buckner, Randy L; Calhoun, Vincent; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Cervenka, Simon; Chaim-Avancini, Tiffany M; Ching, Christopher R K; Chubar, Victoria; Clark, Vincent P; Conrod, Patricia; Conzelmann, Annette; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; Dale, Anders M; Davey, Christopher; de Geus, Eco J C; de Haan, Lieuwe; de Zubicaray, Greig I; den Braber, Anouk; Dickie, Erin W; Di Giorgio, Annabella; Doan, Nhat Trung; Dørum, Erlend S; Ehrlich, Stefan; Erk, Susanne; Espeseth, Thomas; Fatouros-Bergman, Helena; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Frodl, Thomas; Fuentes-Claramonte, Paola; Glahn, David C; Gotlib, Ian H; Grabe, Hans-Jörgen; Grimm, Oliver; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Rachel E; Gur, Ruben C; Harrison, Ben J; Hartman, Catharine A; Hatton, Sean N; Heinz, Andreas; Heslenfeld, Dirk J; Hibar, Derrek P; Hickie, Ian B; Ho, Beng-Choon; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony; Jernigan, Terry L; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kahn, Rene; Kalnin, Andrew; Kanai, Ryota; Klein, Marieke; Klyushnik, Tatyana P; Koenders, Laura; Koops, Sanne; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lázaro, Luisa; Lebedeva, Irina; Lee, Won Hee; Lesch, Klaus-Peter; Lochner, Christine; Machielsen, Marise W J; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Colm; McDonald, Brenna C; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; Menchón, José M; Medland, Sarah E; Meyer-Lindenberg, Andreas; Naaijen, Jilly; Najt, Pablo; Nakao, Tomohiro; Nordvik, Jan E; Nyberg, Lars; Oosterlaan, Jaap; de la Foz, Víctor Ortiz-García; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Potkin, Steven G; Radua, Joaquim; Reif, Andreas; Rinker, Daniel A; Roffman, Joshua L; Rosa, Pedro G P; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sánchez-Juan, Pascual; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Schmaal, Lianne; Schnell, Knut; Schumann, Gunter; Sim, Kang; Smoller, Jordan W; Sommer, Iris; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Swagerman, Suzanne C; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; Turner, Jessica A; Uhlmann, Anne; van den Heuvel, Odile A; van den Meer, Dennis; van der Wee, Nic J A; van Haren, Neeltje E M; van 't Ent, Dennis; van Erp, Theo G M; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Walton, Esther; Wang, Lei; Wang, Yang; Wassink, Thomas H; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather; Wierenga, Lara M; Wittfeld, Katharina; Wolf, Daniel H; Worker, Amanda; Wright, Margaret J; Yang, Kun; Yoncheva, Yulyia; Zanetti, Marcus V; Ziegler, Georg C; Karolinska Schizophrenia Project (KaSP); Thompson, Paul M; Dima, Danai Human brain mapping 33595143 2021 Feb 17
Subcortical volumes across the lifespan: Data from 18,605 healthy individuals aged 3-90 years. Dima, Danai; Modabbernia, Amirhossein; Papachristou, Efstathios; Doucet, Gaelle E; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andersson, Micael; Andreasen, Nancy C; Andreassen, Ole A; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Buckner, Randy L; Calhoun, Vincent; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Cervenka, Simon; Chaim-Avancini, Tiffany M; Ching, Christopher R K; Chubar, Victoria; Clark, Vincent P; Conrod, Patricia; Conzelmann, Annette; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; Dale, Anders M; Davey, Christopher; de Geus, Eco J C; de Haan, Lieuwe; de Zubicaray, Greig I; den Braber, Anouk; Dickie, Erin W; Di Giorgio, Annabella; Doan, Nhat Trung; Dørum, Erlend S; Ehrlich, Stefan; Erk, Susanne; Espeseth, Thomas; Fatouros-Bergman, Helena; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Frodl, Thomas; Fuentes-Claramonte, Paola; Glahn, David C; Gotlib, Ian H; Grabe, Hans-Jörgen; Grimm, Oliver; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Rachel E; Gur, Ruben C; Harrison, Ben J; Hartman, Catharine A; Hatton, Sean N; Heinz, Andreas; Heslenfeld, Dirk J; Hibar, Derrek P; Hickie, Ian B; Ho, Beng-Choon; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony; Jernigan, Terry L; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kahn, Rene; Kalnin, Andrew; Kanai, Ryota; Klein, Marieke; Klyushnik, Tatyana P; Koenders, Laura; Koops, Sanne; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lázaro, Luisa; Lebedeva, Irina; Lee, Won Hee; Lesch, Klaus-Peter; Lochner, Christine; Machielsen, Marise W J; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Colm; McDonald, Brenna C; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; Menchón, José M; Medland, Sarah E; Meyer-Lindenberg, Andreas; Naaijen, Jilly; Najt, Pablo; Nakao, Tomohiro; Nordvik, Jan E; Nyberg, Lars; Oosterlaan, Jaap; de la Foz, Víctor Ortiz-García; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Potkin, Steven G; Radua, Joaquim; Reif, Andreas; Rinker, Daniel A; Roffman, Joshua L; Rosa, Pedro G P; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sánchez-Juan, Pascual; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Schmaal, Lianne; Schnell, Knut; Schumann, Gunter; Sim, Kang; Smoller, Jordan W; Sommer, Iris; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Swagerman, Suzanne C; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; Turner, Jessica A; Uhlmann, Anne; van den Heuvel, Odile A; van den Meer, Dennis; van der Wee, Nic J A; van Haren, Neeltje E M; Van't Ent, Dennis; van Erp, Theo G M; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Walton, Esther; Wang, Lei; Wang, Yang; Wassink, Thomas H; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather; Wierenga, Lara M; Williams, Steven C R; Wittfeld, Katharina; Wolf, Daniel H; Worker, Amanda; Wright, Margaret J; Yang, Kun; Yoncheva, Yulyia; Zanetti, Marcus V; Ziegler, Georg C; Thompson, Paul M; Frangou, Sophia; Karolinska Schizophrenia Project (KaSP) Human brain mapping 33570244 2021 Feb 11
Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study. Emad, Amin; Sinha, Saurabh NPJ systems biology and applications 33558504 2021 Feb 08
Neural network involving medial orbitofrontal cortex and dorsal periaqueductal gray regulation in human alcohol abuse. Jia, Tianye; Xie, Chao; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Robbins, Trevor W; Feng, Jianfeng; IMAGEN Consortium Science advances 33536210 2021 Feb
Digital Medicine Community Perspectives and Challenges: Survey Study. Bent, Brinnae; Sim, Ida; Dunn, Jessilyn P JMIR mHealth and uHealth 33533721 2021 Feb 03
Daily, weekly, seasonal and menstrual cycles in women's mood, behaviour and vital signs. Pierson, Emma; Althoff, Tim; Thomas, Daniel; Hillard, Paula; Leskovec, Jure Nature human behaviour 33526880 2021 06
Evidence for similar structural brain anomalies in youth and adult attention-deficit/hyperactivity disorder: a machine learning analysis. Zhang-James, Yanli; Helminen, Emily C; Liu, Jinru; ENIGMA-ADHD Working Group; Franke, Barbara; Hoogman, Martine; Faraone, Stephen V Translational psychiatry 33526765 2021 Feb 01
Ultradeep sequencing differentiates patterns of skin clonal mutations associated with sun-exposure status and skin cancer burden. Wei, Lei; Christensen, Sean R; Fitzgerald, Megan E; Graham, James; Hutson, Nicholas D; Zhang, Chi; Huang, Ziyun; Hu, Qiang; Zhan, Fenglin; Xie, Jun; Zhang, Jianmin; Liu, Song; Remenyik, Eva; Gellen, Emese; Colegio, Oscar R; Bax, Michael; Xu, Jinhui; Lin, Haifan; Huss, Wendy J; Foster, Barbara A; Paragh, Gyorgy Science advances 33523857 2021 01
Morphological variables associated with ruptured basilar tip aneurysms. Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose Scientific reports 33510194 2021 01 28
Mapping cortical and subcortical asymmetries in substance dependence: Findings from the ENIGMA Addiction Working Group. Cao, Zhipeng; Ottino-Gonzalez, Jonatan; Cupertino, Renata B; Schwab, Nathan; Hoke, Colin; Catherine, Orr; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Momenan, Reza; Paulus, Martin P; Schmaal, Lianne; Sinha, Rajita; Sjoerds, Zsuzsika; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Uhlmann, Anne; van Holst, Ruth J; Veltman, Dick J; Wiers, Reinout W; Yücel, Murat; Zhang, Sheng; Jahanshad, Neda; Thompson, Paul M; Conrod, Patricia; Mackey, Scott; Garavan, Hugh Addiction biology 33508888 2021 09
Are psychotic-like experiences related to a discontinuation of cannabis consumption in young adults? Daedelow, Laura S; Banaschewski, Tobias; Berning, Moritz; Bokde, Arun L W; Brühl, Rüdiger; Burke Quinlan, Erin; Curran, H Valerie; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Hardon, Anita; Kaminski, Jakob; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Murray, Hayley; Nees, Frauke; Oei, Nicole Y L; Papadopoulos Orfanos, Dimitri; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Rosenthal, Annika; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Wiers, Reinout W; Schumann, Gunter; Heinz, Andreas; ERANID Consortium; IMAGEN Consortium Schizophrenia research 33493775 2021 02
Meta-Analysis Reveals the Prognostic Relevance of Nuclear and Membrane-Associated Bile Acid Receptors in Gastric Cancer. Rohr, Michael; Aljabban, Jihad; Rudeski-Rohr, Trina; Lessans, Spencer; Nakkina, Sai Preethi; Hadley, Dexter; Zhu, Xiang; Altomare, Deborah A Clinical and translational gastroenterology 33492921 2021 Jan 12
The Human Brain Is Best Described as Being on a Female/Male Continuum: Evidence from a Neuroimaging Connectivity Study. Zhang, Yi; Luo, Qiang; Huang, Chu-Chung; Lo, Chun-Yi Zac; Langley, Christelle; Desrivières, Sylvane; Quinlan, Erin Burke; Banaschewski, Tobias; Millenet, Sabina; Bokde, Arun L W; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Paillère-Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Tsai, Shih-Jen; Lin, Ching-Po; Bullmore, Ed; Schumann, Gunter; Sahakian, Barbara J; Feng, Jianfeng; IMAGEN consortium Cerebral cortex (New York, N.Y. : 1991) 33471126 2021 05 10
Decentralized Multisite VBM Analysis During Adolescence Shows Structural Changes Linked to Age, Body Mass Index, and Smoking: a COINSTAC Analysis. Gazula, Harshvardhan; Holla, Bharath; Zhang, Zuo; Xu, Jiayuan; Verner, Eric; Kelly, Ross; Jain, Sanjeev; Bharath, Rose Dawn; Barker, Gareth J; Basu, Debasish; Chakrabarti, Amit; Kalyanram, Kartik; Kumaran, Kalyanaraman; Singh, Lenin; Kuriyan, Rebecca; Murthy, Pratima; Benega, Vivek; Plis, Sergey M; Sarwate, Anand D; Turner, Jessica A; Schumann, Gunter; Calhoun, Vince D Neuroinformatics 33462781 2021 10
FairALM: Augmented Lagrangian Method for Training Fair Models with Little Regret. Lokhande, Vishnu Suresh; Akash, Aditya Kumar; Ravi, Sathya N; Singh, Vikas Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision 33462570 2020 Aug
Generating Accurate Pseudo-labels in Semi-Supervised Learning and Avoiding Overconfident Predictions via Hermite Polynomial Activations. Lokhande, Vishnu Suresh; Tasneeyapant, Songwong; Venkatesh, Abhay; Ravi, Sathya N; Singh, Vikas Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 33462534 2020 Jun
Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions. Duffy, Ben A; Zhao, Lu; Sepehrband, Farshid; Min, Joyce; Wang, Danny Jj; Shi, Yonggang; Toga, Arthur W; Kim, Hosung; Alzheimer's Disease Neuroimaging Initiative NeuroImage 33460797 2021 Jan 15
Structural brain imaging studies offer clues about the effects of the shared genetic etiology among neuropsychiatric disorders. Radonjić, Nevena V; Hess, Jonathan L; Rovira, Paula; Andreassen, Ole; Buitelaar, Jan K; Ching, Christopher R K; Franke, Barbara; Hoogman, Martine; Jahanshad, Neda; McDonald, Carrie; Schmaal, Lianne; Sisodiya, Sanjay M; Stein, Dan J; van den Heuvel, Odile A; van Erp, Theo G M; van Rooij, Daan; Veltman, Dick J; Thompson, Paul; Faraone, Stephen V Molecular psychiatry 33456050 2021 06
In the Eye of the Beholder: Gaze and Actions in First Person Video. Li, Yin; Liu, Miao; Rehg, James M IEEE transactions on pattern analysis and machine intelligence 33449877 2023 Jun
Association of Immunosuppression and Viral Load With Subcortical Brain Volume in an International Sample of People Living With HIV. Nir, Talia M; Fouche, Jean-Paul; Ananworanich, Jintanat; Ances, Beau M; Boban, Jasmina; Brew, Bruce J; Chaganti, Joga R; Chang, Linda; Ching, Christopher R K; Cysique, Lucette A; Ernst, Thomas; Faskowitz, Joshua; Gupta, Vikash; Harezlak, Jaroslaw; Heaps-Woodruff, Jodi M; Hinkin, Charles H; Hoare, Jacqueline; Joska, John A; Kallianpur, Kalpana J; Kuhn, Taylor; Lam, Hei Y; Law, Meng; Lebrun-Frénay, Christine; Levine, Andrew J; Mondot, Lydiane; Nakamoto, Beau K; Navia, Bradford A; Pennec, Xavier; Porges, Eric C; Salminen, Lauren E; Shikuma, Cecilia M; Surento, Wesley; Thames, April D; Valcour, Victor; Vassallo, Matteo; Woods, Adam J; Thompson, Paul M; Cohen, Ronald A; Paul, Robert; Stein, Dan J; Jahanshad, Neda JAMA network open 33449093 2021 01 04
A neural network to predict the knee adduction moment in patients with osteoarthritis using anatomical landmarks obtainable from 2D video analysis. Boswell, M A; Uhlrich, S D; Kidziński, Ł; Thomas, K; Kolesar, J A; Gold, G E; Beaupre, G S; Delp, S L Osteoarthritis and cartilage 33422707 2021 Mar
xGAP: A python based efficient, modular, extensible and fault tolerant genomic analysis pipeline for variant discovery. Gorla, Aditya; Jew, Brandon; Zhang, Luke; Sul, Jae Hoon Bioinformatics (Oxford, England) 33416856 2021 Jan 08
An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes. Ghaffari, Saba; Hanson, Casey; Schmidt, Remington E; Bouchonville, Kelly J; Offer, Steven M; Sinha, Saurabh Genome biology 33413550 2021 01 07
Coordinating Global Multi-Site Studies of Military-Relevant Traumatic Brain Injury: Opportunities, Challenges, and Harmonization Guidelines. Tate, David F; Dennis, Emily L; Adams, John T; Adamson, Maheen M; Belanger, Heather G; Bigler, Erin D; Bouchard, Heather C; Clark, Alexandra L; Delano-Wood, Lisa M; Disner, Seth G; Eapen, Blessen C; Franz, Carol E; Geuze, Elbert; Goodrich-Hunsaker, Naomi J; Han, Kihwan; Hayes, Jasmeet P; Hinds 2nd, Sidney R; Hodges, Cooper B; Hovenden, Elizabeth S; Irimia, Andrei; Kenney, Kimbra; Koerte, Inga K; Kremen, William S; Levin, Harvey S; Lindsey, Hannah M; Morey, Rajendra A; Newsome, Mary R; Ollinger, John; Pugh, Mary Jo; Scheibel, Randall S; Shenton, Martha E; Sullivan, Danielle R; Taylor, Brian A; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin Sc; Wang, Xin; Ware, Ashley L; Zafonte, Ross; Thompson, Paul M; Wilde, Elisabeth A Brain imaging and behavior 33409819 2021 Apr
Network Analysis Reveals a Distinct Axis of Macrophage Activation in Response to Conflicting Inflammatory Cues. Liu, Xiaji; Zhang, Jingyuan; Zeigler, Angela C; Nelson, Anders R; Lindsey, Merry L; Saucerman, Jeffrey J Journal of immunology (Baltimore, Md. : 1950) 33408259 2021 Feb 15
Functional Connectivity Predicts Individual Development of Inhibitory Control during Adolescence. Wang, Haiyan; Fan, Lingzhong; Song, Ming; Liu, Bing; Wu, Dongya; Jiang, Rongtao; Li, Jin; Li, Ang; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Jiang, Tianzi Cerebral cortex (New York, N.Y. : 1991) 33386409 2021 03 31
Exploring the value of MALDI-TOF MS for the detection of clonal outbreaks of Burkholderia contaminans. Fiamanya, Selali; Cipolla, Lucía; Prieto, Mónica; Stelling, John Journal of microbiological methods 33383044 2021 Feb
Using indication embeddings to represent patient health for drug safety studies. Melamed, Rachel D JAMIA open 33376961 2020 Oct
Unmixing for Causal Inference: Thoughts on McCaffrey and Danks. Zhang, Kun; Glymour, Madelyn R K The British journal for the philosophy of science 33376450 2020 Dec
OpenSim Moco: Musculoskeletal optimal control. Dembia, Christopher L; Bianco, Nicholas A; Falisse, Antoine; Hicks, Jennifer L; Delp, Scott L PLoS computational biology 33370252 2020 12
Community Approaches for Integrating Environmental Exposures into Human Models of Disease. Thessen, Anne E; Grondin, Cynthia J; Kulkarni, Resham D; Brander, Susanne; Truong, Lisa; Vasilevsky, Nicole A; Callahan, Tiffany J; Chan, Lauren E; Westra, Brian; Willis, Mary; Rothenberg, Sarah E; Jarabek, Annie M; Burgoon, Lyle; Korrick, Susan A; Haendel, Melissa A Environmental health perspectives 33369481 2020 12
FreeSurfer-based segmentation of hippocampal subfields: A review of methods and applications, with a novel quality control procedure for ENIGMA studies and other collaborative efforts. Sämann, Philipp G; Iglesias, Juan Eugenio; Gutman, Boris; Grotegerd, Dominik; Leenings, Ramona; Flint, Claas; Dannlowski, Udo; Clarke-Rubright, Emily K; Morey, Rajendra A; van Erp, Theo G M; Whelan, Christopher D; Han, Laura K M; van Velzen, Laura S; Cao, Bo; Augustinack, Jean C; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne Human brain mapping 33368865 2020 Dec 27
OCTAD: an open workspace for virtually screening therapeutics targeting precise cancer patient groups using gene expression features. Zeng, Billy; Glicksberg, Benjamin S; Newbury, Patrick; Chekalin, Evgeny; Xing, Jing; Liu, Ke; Wen, Anita; Chow, Caven; Chen, Bin Nature protocols 33361798 2021 02
Obstacles to the reuse of study metadata in ClinicalTrials.gov. Miron, Laura; Gonçalves, Rafael S; Musen, Mark A Scientific data 33339830 2020 12 18
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Warren, Wesley C; Harris, R Alan; Haukness, Marina; Fiddes, Ian T; Murali, Shwetha C; Fernandes, Jason; Dishuck, Philip C; Storer, Jessica M; Raveendran, Muthuswamy; Hillier, LaDeana W; Porubsky, David; Mao, Yafei; Gordon, David; Vollger, Mitchell R; Lewis, Alexandra P; Munson, Katherine M; DeVogelaere, Elizabeth; Armstrong, Joel; Diekhans, Mark; Walker, Jerilyn A; Tomlinson, Chad; Graves-Lindsay, Tina A; Kremitzki, Milinn; Salama, Sofie R; Audano, Peter A; Escalona, Merly; Maurer, Nicholas W; Antonacci, Francesca; Mercuri, Ludovica; Maggiolini, Flavia A M; Catacchio, Claudia Rita; Underwood, Jason G; O'Connor, David H; Sanders, Ashley D; Korbel, Jan O; Ferguson, Betsy; Kubisch, H Michael; Picker, Louis; Kalin, Ned H; Rosene, Douglas; Levine, Jon; Abbott, David H; Gray, Stanton B; Sanchez, Mar M; Kovacs-Balint, Zsofia A; Kemnitz, Joseph W; Thomasy, Sara M; Roberts, Jeffrey A; Kinnally, Erin L; Capitanio, John P; Skene, J H Pate; Platt, Michael; Cole, Shelley A; Green, Richard E; Ventura, Mario; Wiseman, Roger W; Paten, Benedict; Batzer, Mark A; Rogers, Jeffrey; Eichler, Evan E Science (New York, N.Y.) 33335035 2020 12 18
Synergistic and Antagonistic Drug Combinations against SARS-CoV-2. Bobrowski, Tesia; Chen, Lu; Eastman, Richard T; Itkin, Zina; Shinn, Paul; Chen, Catherine Z; Guo, Hui; Zheng, Wei; Michael, Sam; Simeonov, Anton; Hall, Matthew D; Zakharov, Alexey V; Muratov, Eugene N Molecular therapy : the journal of the American Society of Gene Therapy 33333292 2021 02 03
High-fidelity musculoskeletal modeling reveals a motor planning contribution to the speed-accuracy tradeoff. Al Borno, Mazen; Vyas, Saurabh; Shenoy, Krishna V; Delp, Scott L eLife. 33325369 2020 Dec 16;
Comparison of segmentation-free and segmentation-dependent computer-aided diagnosis of breast masses on a public mammography dataset. Sawyer Lee, Rebecca; Dunnmon, Jared A; He, Ann; Tang, Siyi; Ré, Christopher; Rubin, Daniel L Journal of biomedical informatics 33309994 2021 01
Vascular Geometry Associated with Anterior Communicating Artery Aneurysm Formation. Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose World neurosurgery 33307259 2021 Feb
Engagement With a Behavior Change App for Alcohol Reduction: Data Visualization for Longitudinal Observational Study. Bell, Lauren; Garnett, Claire; Qian, Tianchen; Perski, Olga; Williamson, Elizabeth; Potts, Henry Ww Journal of medical Internet research 33306026 2020 12 11
HMPDACC: a Human Microbiome Project Multi-omic data resource. Creasy, Heather Huot; Felix, Victor; Aluvathingal, Jain; Crabtree, Jonathan; Ifeonu, Olukemi; Matsumura, James; McCracken, Carrie; Nickel, Lance; Orvis, Joshua; Schor, Mike; Giglio, Michelle; Mahurkar, Anup; White, Owen Nucleic acids research 33305317 2021 01 08
Ten years of enhancing neuro-imaging genetics through meta-analysis: An overview from the ENIGMA Genetics Working Group. Medland, Sarah E; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie N; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Pizzagalli, Fabrizio; Thomopoulos, Sophia I; Stein, Jason L; Franke, Barbara; Martin, Nicholas G; Thompson, Paul M; ENIGMA Genetics Working Group Human brain mapping 33300665 2022 Jan
The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area. Tilot, Amanda K; Khramtsova, Ekaterina A; Liang, Dan; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Liu, Siyao; Brotman, Sarah M; Thompson, Paul M; Medland, Sarah E; Macciardi, Fabio; Stranger, Barbara E; Davis, Lea K; Fisher, Simon E; Stein, Jason L Cerebral cortex (New York, N.Y. : 1991) 33290510 2021 03 05
MicroRNA miR-24-3p reduces DNA damage responses, apoptosis, and susceptibility to chronic obstructive pulmonary disease. Nouws, Jessica; Wan, Feng; Finnemore, Eric; Roque, Willy; Kim, So-Jin; Bazan, Isabel; Li, Chuan-Xing; Skold, C Magnus; Dai, Qile; Yan, Xiting; Chioccioli, Maurizio; Neumeister, Veronique; Britto, Clemente J; Sweasy, Joann; Bindra, Ranjit; Wheelock, Åsa M; Gomez, Jose L; Kaminski, Naftali; Lee, Patty J; Sauler, Maor JCI insight 33290275 2021 Jan 25
Cortical volume abnormalities in posttraumatic stress disorder: an ENIGMA-psychiatric genomics consortium PTSD workgroup mega-analysis. Wang, Xin; Xie, Hong; Chen, Tian; Cotton, Andrew S; Salminen, Lauren E; Logue, Mark W; Clarke-Rubright, Emily K; Wall, John; Dennis, Emily L; O'Leary, Brian M; Abdallah, Chadi G; Andrew, Elpiniki; Baugh, Lee A; Bomyea, Jessica; Bruce, Steven E; Bryant, Richard; Choi, Kyle; Daniels, Judith K; Davenport, Nicholas D; Davidson, Richard J; DeBellis, Michael; deRoon-Cassini, Terri; Disner, Seth G; Fani, Negar; Fercho, Kelene A; Fitzgerald, Jacklynn; Forster, Gina L; Frijling, Jessie L; Geuze, Elbert; Gomaa, Hassaan; Gordon, Evan M; Grupe, Dan; Harpaz-Rotem, Ilan; Haswell, Courtney C; Herzog, Julia I; Hofmann, David; Hollifield, Michael; Hosseini, Bobak; Hudson, Anna R; Ipser, Jonathan; Jahanshad, Neda; Jovanovic, Tanja; Kaufman, Milissa L; King, Anthony P; Koch, Saskia B J; Koerte, Inga K; Korgaonkar, Mayuresh S; Krystal, John H; Larson, Christine; Lebois, Lauren A M; Levy, Ifat; Li, Gen; Magnotta, Vincent A; Manthey, Antje; May, Geoffrey; McLaughlin, Katie A; Mueller, Sven C; Nawijn, Laura; Nelson, Steven M; Neria, Yuval; Nitschke, Jack B; Olff, Miranda; Olson, Elizabeth A; Peverill, Matthew; Luan Phan, K; Rashid, Faisal M; Ressler, Kerry; Rosso, Isabelle M; Sambrook, Kelly; Schmahl, Christian; Shenton, Martha E; Sierk, Anika; Simons, Jeffrey S; Simons, Raluca M; Sponheim, Scott R; Stein, Murray B; Stein, Dan J; Stevens, Jennifer S; Straube, Thomas; Suarez-Jimenez, Benjamin; Tamburrino, Marijo; Thomopoulos, Sophia I; van der Wee, Nic J A; van der Werff, Steven J A; van Erp, Theo G M; van Rooij, Sanne J H; van Zuiden, Mirjam; Varkevisser, Tim; Veltman, Dick J; Vermeiren, Robert R J M; Walter, Henrik; Wang, Li; Zhu, Ye; Zhu, Xi; Thompson, Paul M; Morey, Rajendra A; Liberzon, Israel Molecular psychiatry. 33288872 2020 Dec 07;
Identification of Dysregulated Genes for Late-Onset Alzheimer's Disease Using Gene Expression Data in Brain. Arzouni, Nibal; Matloff, Will; Zhao, Lu; Ning, Kaida; Toga, Arthur W Journal of Alzheimer's disease & Parkinsonism 33282526 2020
COVID-19 Knowledge Extractor (COKE): A Tool and a Web Portal to Extract Drug - Target Protein Associations from the CORD-19 Corpus of Scientific Publications on COVID-19. Korn, Daniel; Pervitsky, Vera; Bobrowski, Tesia; Alves, Vinicius; Schmitt, Charles; Bizon, Cristopher; Baker, Nancy; Chirkova, Rada; Cherkasov, Artem; Muratov, Eugene; Tropsha, Alexander ChemRxiv : the preprint server for chemistry 33269341 2020 Nov 26
The Impact of COVID-19 on African American Communities in the United States. Cyrus, Elena; Clarke, Rachel; Hadley, Dexter; Bursac, Zoran; Trepka, Mary Jo; Dévieux, Jessy G; Bagci, Ulas; Furr-Holden, Debra; Coudray, Makella; Mariano, Yandra; Kiplagat, Sandra; Noel, Ines; Ravelo, Gira; Paley, Michelle; Wagner, Eric F Health equity 33269331 2020
The Human Phenotype Ontology in 2021. Köhler, Sebastian; Gargano, Michael; Matentzoglu, Nicolas; Carmody, Leigh C; Lewis-Smith, David; Vasilevsky, Nicole A; Danis, Daniel; Balagura, Ganna; Baynam, Gareth; Brower, Amy M; Callahan, Tiffany J; Chute, Christopher G; Est, Johanna L; Galer, Peter D; Ganesan, Shiva; Griese, Matthias; Haimel, Matthias; Pazmandi, Julia; Hanauer, Marc; Harris, Nomi L; Hartnett, Michael J; Hastreiter, Maximilian; Hauck, Fabian; He, Yongqun; Jeske, Tim; Kearney, Hugh; Kindle, Gerhard; Klein, Christoph; Knoflach, Katrin; Krause, Roland; Lagorce, David; McMurry, Julie A; Miller, Jillian A; Munoz-Torres, Monica C; Peters, Rebecca L; Rapp, Christina K; Rath, Ana M; Rind, Shahmir A; Rosenberg, Avi Z; Segal, Michael M; Seidel, Markus G; Smedley, Damian; Talmy, Tomer; Thomas, Yarlalu; Wiafe, Samuel A; Xian, Julie; Yüksel, Zafer; Helbig, Ingo; Mungall, Christopher J; Haendel, Melissa A; Robinson, Peter N Nucleic acids research 33264411 2021 01 08
Association of Genetic and Phenotypic Assessments With Onset of Disordered Eating Behaviors and Comorbid Mental Health Problems Among Adolescents. Robinson, Lauren; Zhang, Zuo; Jia, Tianye; Bobou, Marina; Roach, Anna; Campbell, Iain; Irish, Madeleine; Quinlan, Erin Burke; Tay, Nicole; Barker, Edward D; Banaschewski, Tobias; Bokde, Arun L W; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Stringaris, Argyris; Penttilä, Jani; van Noort, Betteke; Grimmer, Yvonne; Martinot, Marie-Laure Paillère; Insensee, Corinna; Becker, Andreas; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike; Desrivières, Sylvane; IMAGEN Consortium JAMA network open 33263759 2020 12 01
Metaanalysis Reveals Genetic Correlates of Osteoporosis Pathogenesis. Hasan, Laith K; Aljabban, Jihad; Rohr, Michael; Mukhtar, Mohamed; Adapa, Nikhil; Salim, Rahaf; Aljabban, Nabeal; Syed, Saad; Syed, Sharjeel; Panahiazar, Maryam; Hadley, Dexter; Jarjour, Wael The Journal of rheumatology 33262303 2020 Dec 01
Patch-Based Surface Morphometry Feature Selection with Federated Group Lasso Regression. Wu, Jianfeng; Zhang, Jie; Li, Qingyang; Su, Yi; Chen, Kewei; Reiman, Eric M; Wang, Jie; Lepore, Natasha; Ye, Jieping; Thompson, Paul M; Wang, Yalin Proceedings of SPIE--the International Society for Optical Engineering. 33250550 2020 Oct;
Transforming the study of organisms: Phenomic data models and knowledge bases. Thessen, Anne E; Walls, Ramona L; Vogt, Lars; Singer, Jessica; Warren, Robert; Buttigieg, Pier Luigi; Balhoff, James P; Mungall, Christopher J; McGuinness, Deborah L; Stucky, Brian J; Yoder, Matthew J; Haendel, Melissa A PLoS computational biology 33232313 2020 11
Bridging the Brain and Data Sciences. Van Horn, John Darrell Big data 33211552 2021 06
Network-based atrophy modeling in the common epilepsies: A worldwide ENIGMA study. Larivière, Sara; Rodríguez-Cruces, Raúl; Royer, Jessica; Caligiuri, Maria Eugenia; Gambardella, Antonio; Concha, Luis; Keller, Simon S; Cendes, Fernando; Yasuda, Clarissa; Bonilha, Leonardo; Gleichgerrcht, Ezequiel; Focke, Niels K; Domin, Martin; von Podewills, Felix; Langner, Soenke; Rummel, Christian; Wiest, Roland; Martin, Pascal; Kotikalapudi, Raviteja; O'Brien, Terence J; Sinclair, Benjamin; Vivash, Lucy; Desmond, Patricia M; Alhusaini, Saud; Doherty, Colin P; Cavalleri, Gianpiero L; Delanty, Norman; Kälviäinen, Reetta; Jackson, Graeme D; Kowalczyk, Magdalena; Mascalchi, Mario; Semmelroch, Mira; Thomas, Rhys H; Soltanian-Zadeh, Hamid; Davoodi-Bojd, Esmaeil; Zhang, Junsong; Lenge, Matteo; Guerrini, Renzo; Bartolini, Emanuele; Hamandi, Khalid; Foley, Sonya; Weber, Bernd; Depondt, Chantal; Absil, Julie; Carr, Sarah J A; Abela, Eugenio; Richardson, Mark P; Devinsky, Orrin; Severino, Mariasavina; Striano, Pasquale; Tortora, Domenico; Hatton, Sean N; Vos, Sjoerd B; Duncan, John S; Whelan, Christopher D; Thompson, Paul M; Sisodiya, Sanjay M; Bernasconi, Andrea; Labate, Angelo; McDonald, Carrie R; Bernasconi, Neda; Bernhardt, Boris C Science advances. 33208365 2020 Nov;
Uncovering Effective Explanations for Interactive Genomic Data Analysis. Huang, Silu; Blatti, Charles; Sinha, Saurabh; Parameswaran, Aditya Patterns (New York, N.Y.). 33205133 2020 Sep 11;
The Clinical Kinase Index: A Method to Prioritize Understudied Kinases as Drug Targets for the Treatment of Cancer. Essegian, Derek; Khurana, Rimpi; Stathias, Vasileios; Schürer, Stephan C Cell reports. Medicine. 33205077 2020 Oct 20;
Association Between the Economic Environment and the Living Organ Donation Rate: Evidence and Implications. Lee, Sean S; Sielski, Michael W; Charpentier, Kevin P Journal of the American College of Surgeons 33197569 2021 02
Hidden Stratification Causes Clinically Meaningful Failures in Machine Learning for Medical Imaging. Oakden-Rayner, Luke; Dunnmon, Jared; Carneiro, Gustavo; Ré, Christopher Proceedings of the ACM Conference on Health, Inference, and Learning. 33196064 2020 Apr;
Using novel mobile sensors to assess stress and smoking lapse. Nakajima, Motohiro; Lemieux, Andrine M; Fiecas, Mark; Chatterjee, Soujanya; Sarker, Hillol; Saleheen, Nazir; Ertin, Emre; Kumar, Santosh; al'Absi, Mustafa International journal of psychophysiology : official journal of the International Organization of Psychophysiology 33189770 2020 12
Atlas55+: Brain Functional Atlas of Resting-State Networks for Late Adulthood. Doucet, Gaelle E; Labache, Loic; Thompson, Paul M; Joliot, Marc; Frangou, Sophia; Alzheimer’s Disease Neuroimaging Initiative Cerebral cortex (New York, N.Y. : 1991) 33188411 2021 02 05
Dense sampling of bird diversity increases power of comparative genomics. Feng, Shaohong; Stiller, Josefin; Deng, Yuan; Armstrong, Joel; Fang, Qi; Reeve, Andrew Hart; Xie, Duo; Chen, Guangji; Guo, Chunxue; Faircloth, Brant C; Petersen, Bent; Wang, Zongji; Zhou, Qi; Diekhans, Mark; Chen, Wanjun; Andreu-Sánchez, Sergio; Margaryan, Ashot; Howard, Jason Travis; Parent, Carole; Pacheco, George; Sinding, Mikkel-Holger S; Puetz, Lara; Cavill, Emily; Ribeiro, Ângela M; Eckhart, Leopold; Fjeldså, Jon; Hosner, Peter A; Brumfield, Robb T; Christidis, Les; Bertelsen, Mads F; Sicheritz-Ponten, Thomas; Tietze, Dieter Thomas; Robertson, Bruce C; Song, Gang; Borgia, Gerald; Claramunt, Santiago; Lovette, Irby J; Cowen, Saul J; Njoroge, Peter; Dumbacher, John Philip; Ryder, Oliver A; Fuchs, Jérôme; Bunce, Michael; Burt, David W; Cracraft, Joel; Meng, Guanliang; Hackett, Shannon J; Ryan, Peter G; Jønsson, Knud Andreas; Jamieson, Ian G; da Fonseca, Rute R; Braun, Edward L; Houde, Peter; Mirarab, Siavash; Suh, Alexander; Hansson, Bengt; Ponnikas, Suvi; Sigeman, Hanna; Stervander, Martin; Frandsen, Paul B; van der Zwan, Henriette; van der Sluis, Rencia; Visser, Carina; Balakrishnan, Christopher N; Clark, Andrew G; Fitzpatrick, John W; Bowman, Reed; Chen, Nancy; Cloutier, Alison; Sackton, Timothy B; Edwards, Scott V; Foote, Dustin J; Shakya, Subir B; Sheldon, Frederick H; Vignal, Alain; Soares, André E R; Shapiro, Beth; González-Solís, Jacob; Ferrer-Obiol, Joan; Rozas, Julio; Riutort, Marta; Tigano, Anna; Friesen, Vicki; Dalén, Love; Urrutia, Araxi O; Székely, Tamás; Liu, Yang; Campana, Michael G; Corvelo, André; Fleischer, Robert C; Rutherford, Kim M; Gemmell, Neil J; Dussex, Nicolas; Mouritsen, Henrik; Thiele, Nadine; Delmore, Kira; Liedvogel, Miriam; Franke, Andre; Hoeppner, Marc P; Krone, Oliver; Fudickar, Adam M; Milá, Borja; Ketterson, Ellen D; Fidler, Andrew Eric; Friis, Guillermo; Parody-Merino, Ángela M; Battley, Phil F; Cox, Murray P; Lima, Nicholas Costa Barroso; Prosdocimi, Francisco; Parchman, Thomas Lee; Schlinger, Barney A; Loiselle, Bette A; Blake, John G; Lim, Haw Chuan; Day, Lainy B; Fuxjager, Matthew J; Baldwin, Maude W; Braun, Michael J; Wirthlin, Morgan; Dikow, Rebecca B; Ryder, T Brandt; Camenisch, Glauco; Keller, Lukas F; DaCosta, Jeffrey M; Hauber, Mark E; Louder, Matthew I M; Witt, Christopher C; McGuire, Jimmy A; Mudge, Joann; Megna, Libby C; Carling, Matthew D; Wang, Biao; Taylor, Scott A; Del-Rio, Glaucia; Aleixo, Alexandre; Vasconcelos, Ana Tereza Ribeiro; Mello, Claudio V; Weir, Jason T; Haussler, David; Li, Qiye; Yang, Huanming; Wang, Jian; Lei, Fumin; Rahbek, Carsten; Gilbert, M Thomas P; Graves, Gary R; Jarvis, Erich D; Paten, Benedict; Zhang, Guojie Nature 33177665 2020 11
Progressive Cactus is a multiple-genome aligner for the thousand-genome era. Armstrong, Joel; Hickey, Glenn; Diekhans, Mark; Fiddes, Ian T; Novak, Adam M; Deran, Alden; Fang, Qi; Xie, Duo; Feng, Shaohong; Stiller, Josefin; Genereux, Diane; Johnson, Jeremy; Marinescu, Voichita Dana; Alföldi, Jessica; Harris, Robert S; Lindblad-Toh, Kerstin; Haussler, David; Karlsson, Elinor; Jarvis, Erich D; Zhang, Guojie; Paten, Benedict Nature. 33177663 2020 11;
COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database. Korn, Daniel; Bobrowski, Tesia; Li, Michael; Kebede, Yaphet; Wang, Patrick; Owen, Phillips; Vaidya, Gaurav; Muratov, Eugene; Chirkova, Rada; Bizon, Chris; Tropsha, Alexander Bioinformatics (Oxford, England) 33175089 2021 05 01
The effect of body mass index on hippocampal morphology and memory performance in late childhood and adolescence. Lynch, Kirsten M; Page, Kathleen A; Shi, Yonggang; Xiang, Anny H; Toga, Arthur W; Clark, Kristi A Hippocampus. 33174346 2020 Nov 11;
Sex differences in viral entry protein expression, host responses to SARS-CoV-2, and in vitro responses to sex steroid hormone treatment in COVID-19. Sun, Mengying; Shankar, Rama; Ko, Meehyun; Chang, Christopher Daniel; Yeh, Shan-Ju; Li, Shilong; Liu, Ke; Zhou, Guoli; Xing, Jing; VanVelsen, Austin; VanVelsen, Tyler; Paithankar, Shreya; Feng, Benjamin Y; Young, Krista; Strug, Michael; Turco, Lauren; Wang, Zichen; Schadt, Eric; Chen, Rong; Li, Xiaohong; Oskotsky, Tomiko; Sirota, Marina; Glicksberg, Benjamin S; Nadkarni, Girish N; Moeser, Adam J; Li, Li; Kim, Seungtaek; Zhou, Jiayu; Chen, Bin Research square. 33173861 2020 Nov 04;
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project. Hoopmann, Michael R; Kusebauch, Ulrike; Palmblad, Magnus; Bandeira, Nuno; Shteynberg, David D; He, Lingjie; Xia, Bin; Stoychev, Stoyan H; Omenn, Gilbert S; Weintraub, Susan T; Moritz, Robert L Journal of proteome research 33166149 2020 12 04
ppmHR: A Privacy-protecting Tool to Fit Inverse Probability Weighted Cox Models in Multisite Studies. Shu, Di; Toh, Sengwee Epidemiology (Cambridge, Mass.) 33165009 2021 03 01
Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data. Zong, Nansu; Stone, Daniel J; Sharma, Deepak K; Wen, Andrew; Wang, Chen; Yu, Yue; Huang, Ming; Liu, Sijia; Liu, Hongfang; Shi, Qian; Jiang, Guoqian International journal of medical informatics. 33160272 2021 Jan;
Learning to encode cellular responses to systematic perturbations with deep generative models. Xue, Yifan; Ding, Michael Q; Lu, Xinghua NPJ systems biology and applications. 33159077 2020 11 06;
Balancing Accuracy and Privacy in Federated Queries of Clinical Data Repositories: Algorithm Development and Validation. Yu, Yun William; Weber, Griffin M Journal of medical Internet research. 33141090 2020 Nov 03;
Linear mixed models with endogenous covariates: modeling sequential treatment effects with application to a mobile health study. Qian, Tianchen; Klasnja, Predrag; Murphy, Susan A Statistical science : a review journal of the Institute of Mathematical Statistics. 33132496 2020;
Staphylococcus aureus antimicrobial susceptibility trends and cluster detection in Vermont: 2012-2018. Stelling, John; Read, Jennifer S; Peters, Rob; Clark, Adam; Bokhari, Marissa; O'Brien, Thomas F Expert review of anti-infective therapy 33131354 2021 06
Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors. Manjunath, Mohith; Yan, Jialu; Youn, Yeoan; Drucker, Kristen L; Kollmeyer, Thomas M; McKinney, Andrew M; Zazubovich, Valter; Zhang, Yi; Costello, Joseph F; Eckel-Passow, Jeanette; Selvin, Paul R; Jenkins, Robert B; Song, Jun S Neuro-oncology 33130899 2021 04 12
Reconstruction of respiratory variation signals from fMRI data. Salas, Jorge A; Bayrak, Roza G; Huo, Yuankai; Chang, Catie NeuroImage 33129927 2021 01 15
Cardiac Imaging of Aortic Valve Area From 34 287 UK Biobank Participants Reveals Novel Genetic Associations and Shared Genetic Comorbidity With Multiple Disease Phenotypes. Córdova-Palomera, Aldo; Tcheandjieu, Catherine; Fries, Jason A; Varma, Paroma; Chen, Vincent S; Fiterau, Madalina; Xiao, Ke; Tejeda, Heliodoro; Keavney, Bernard D; Cordell, Heather J; Tanigawa, Yosuke; Venkataraman, Guhan; Rivas, Manuel A; Ré, Christopher; Ashley, Euan; Priest, James R Circulation. Genomic and precision medicine 33125279 2020 12
A large-scale genome-wide association study meta-analysis of cannabis use disorder. Johnson, Emma C; Demontis, Ditte; Thorgeirsson, Thorgeir E; Walters, Raymond K; Polimanti, Renato; Hatoum, Alexander S; Sanchez-Roige, Sandra; Paul, Sarah E; Wendt, Frank R; Clarke, Toni-Kim; Lai, Dongbing; Reginsson, Gunnar W; Zhou, Hang; He, June; Baranger, David A A; Gudbjartsson, Daniel F; Wedow, Robbee; Adkins, Daniel E; Adkins, Amy E; Alexander, Jeffry; Bacanu, Silviu-Alin; Bigdeli, Tim B; Boden, Joseph; Brown, Sandra A; Bucholz, Kathleen K; Bybjerg-Grauholm, Jonas; Corley, Robin P; Degenhardt, Louisa; Dick, Danielle M; Domingue, Benjamin W; Fox, Louis; Goate, Alison M; Gordon, Scott D; Hack, Laura M; Hancock, Dana B; Hartz, Sarah M; Hickie, Ian B; Hougaard, David M; Krauter, Kenneth; Lind, Penelope A; McClintick, Jeanette N; McQueen, Matthew B; Meyers, Jacquelyn L; Montgomery, Grant W; Mors, Ole; Mortensen, Preben B; Nordentoft, Merete; Pearson, John F; Peterson, Roseann E; Reynolds, Maureen D; Rice, John P; Runarsdottir, Valgerdur; Saccone, Nancy L; Sherva, Richard; Silberg, Judy L; Tarter, Ralph E; Tyrfingsson, Thorarinn; Wall, Tamara L; Webb, Bradley T; Werge, Thomas; Wetherill, Leah; Wright, Margaret J; Zellers, Stephanie; Adams, Mark J; Bierut, Laura J; Boardman, Jason D; Copeland, William E; Farrer, Lindsay A; Foroud, Tatiana M; Gillespie, Nathan A; Grucza, Richard A; Harris, Kathleen Mullan; Heath, Andrew C; Hesselbrock, Victor; Hewitt, John K; Hopfer, Christian J; Horwood, John; Iacono, William G; Johnson, Eric O; Kendler, Kenneth S; Kennedy, Martin A; Kranzler, Henry R; Madden, Pamela A F; Maes, Hermine H; Maher, Brion S; Martin, Nicholas G; McGue, Matthew; McIntosh, Andrew M; Medland, Sarah E; Nelson, Elliot C; Porjesz, Bernice; Riley, Brien P; Stallings, Michael C; Vanyukov, Michael M; Vrieze, Scott; Psychiatric Genomics Consortium Substance Use Disorders Workgroup; Davis, Lea K; Bogdan, Ryan; Gelernter, Joel; Edenberg, Howard J; Stefansson, Kari; Børglum, Anders D; Agrawal, Arpana The lancet. Psychiatry. 33096046 2020 Dec;
Surrounding vascular geometry associated with basilar tip aneurysm formation. Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose Scientific reports 33087795 2020 10 21
Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia. Moreau, Clara A; Urchs, Sebastian G W; Kuldeep, Kumar; Orban, Pierre; Schramm, Catherine; Dumas, Guillaume; Labbe, Aurélie; Huguet, Guillaume; Douard, Elise; Quirion, Pierre-Olivier; Lin, Amy; Kushan, Leila; Grot, Stephanie; Luck, David; Mendrek, Adrianna; Potvin, Stephane; Stip, Emmanuel; Bourgeron, Thomas; Evans, Alan C; Bearden, Carrie E; Bellec, Pierre; Jacquemont, Sebastien Nature communications. 33077750 2020 10 19;
In vivo hippocampal subfield volumes in bipolar disorder-A mega-analysis from The Enhancing Neuro Imaging Genetics through Meta-Analysis Bipolar Disorder Working Group. Haukvik, Unn K; Gurholt, Tiril P; Nerland, Stener; Elvsåshagen, Torbjørn; Akudjedu, Theophilus N; Alda, Martin; Alnaes, Dag; Alonso-Lana, Silvia; Bauer, Jochen; Baune, Bernhard T; Benedetti, Francesco; Berk, Michael; Bettella, Francesco; Bøen, Erlend; Bonnín, Caterina M; Brambilla, Paolo; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Dandash, Orwa; Dannlowski, Udo; Delvecchio, Giuseppe; Díaz-Zuluaga, Ana M; van Erp, Theo G M; Fatjó-Vilas, Mar; Foley, Sonya F; Förster, Katharina; Fullerton, Janice M; Goikolea, José M; Grotegerd, Dominik; Gruber, Oliver; Haarman, Bartholomeus C M; Haatveit, Beathe; Hajek, Tomas; Hallahan, Brian; Harris, Mathew; Hawkins, Emma L; Howells, Fleur M; Hülsmann, Carina; Jahanshad, Neda; Jørgensen, Kjetil N; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Kuplicki, Rayus; Lagerberg, Trine V; Lancaster, Thomas M; Lenroot, Rhoshel K; Lonning, Vera; López-Jaramillo, Carlos; Malt, Ulrik F; McDonald, Colm; McIntosh, Andrew M; McPhilemy, Genevieve; van der Meer, Dennis; Melle, Ingrid; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadi?, Igor; Oertel, Viola; Oldani, Lucio; Opel, Nils; Otaduy, Maria C G; Overs, Bronwyn J; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Radua, Joaquim; Rauer, Lisa; Redlich, Ronny; Repple, Jonathan; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salminen, Lauren E; Salvador, Raymond; Sarró, Salvador; Savitz, Jonathan; Schene, Aart H; Sim, Kang; Soeiro-de-Souza, Marcio G; Stäblein, Michael; Stein, Dan J; Stein, Frederike; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Veltman, Dick J; Vieta, Eduard; Waltemate, Lena; Westlye, Lars T; Whalley, Heather C; Sämann, Philipp G; Thompson, Paul M; Ching, Christopher R K; Andreassen, Ole A; Agartz, Ingrid; ENIGMA Bipolar Disorder Working Group Human brain mapping. 33073925 2020 Oct 19;
Regularization of Deep Neural Networks for EEG Seizure Detection to Mitigate Overfitting. Saqib, Mohammed; Zhu, Yuanda; Wang, May Dongmei; Beaulieu-Jones, Brett Proceedings : Annual International Computer Software and Applications Conference. COMPSAC. 33073266 2020 Jul;
Testing a convolutional neural network-based hippocampal segmentation method in a stroke population. Zavaliangos-Petropulu, Artemis; Tubi, Meral A; Haddad, Elizabeth; Zhu, Alyssa; Braskie, Meredith N; Jahanshad, Neda; Thompson, Paul M; Liew, Sook-Lei Human brain mapping 33067842 2022 Jan
A high-stringency blueprint of the human proteome. Adhikari, Subash; Nice, Edouard C; Deutsch, Eric W; Lane, Lydie; Omenn, Gilbert S; Pennington, Stephen R; Paik, Young-Ki; Overall, Christopher M; Corrales, Fernando J; Cristea, Ileana M; Van Eyk, Jennifer E; Uhlén, Mathias; Lindskog, Cecilia; Chan, Daniel W; Bairoch, Amos; Waddington, James C; Justice, Joshua L; LaBaer, Joshua; Rodriguez, Henry; He, Fuchu; Kostrzewa, Markus; Ping, Peipei; Gundry, Rebekah L; Stewart, Peter; Srivastava, Sanjeeva; Srivastava, Sudhir; Nogueira, Fabio C S; Domont, Gilberto B; Vandenbrouck, Yves; Lam, Maggie P Y; Wennersten, Sara; Vizcaino, Juan Antonio; Wilkins, Marc; Schwenk, Jochen M; Lundberg, Emma; Bandeira, Nuno; Marko-Varga, Gyorgy; Weintraub, Susan T; Pineau, Charles; Kusebauch, Ulrike; Moritz, Robert L; Ahn, Seong Beom; Palmblad, Magnus; Snyder, Michael P; Aebersold, Ruedi; Baker, Mark S Nature communications. 33067450 2020 10 16;
Predicting alcohol dependence from multi-site brain structural measures. Hahn, Sage; Mackey, Scott; Cousijn, Janna; Foxe, John J; Heinz, Andreas; Hester, Robert; Hutchinson, Kent; Kiefer, Falk; Korucuoglu, Ozlem; Lett, Tristram; Li, Chiang-Shan R; London, Edythe; Lorenzetti, Valentina; Maartje, Luijten; Momenan, Reza; Orr, Catherine; Paulus, Martin; Schmaal, Lianne; Sinha, Rajita; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot; van Holst, Ruth J; Veltman, Dick; Walter, Henrik; Wiers, Reinout W; Yucel, Murat; Thompson, Paul M; Conrod, Patricia; Allgaier, Nicholas; Garavan, Hugh Human brain mapping 33064342 2022 Jan
Association between childhood trauma and risk for obesity: a putative neurocognitive developmental pathway. Luo, Qiang; Zhang, Lingli; Huang, Chu-Chung; Zheng, Yan; Kanen, Jonathan W; Zhao, Qi; Yao, Ye; Quinlan, Erin B; Jia, Tianye; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Sahakian, Barbara J; Schumann, Gunter; Li, Fei; Feng, Jianfeng; Desrivières, Sylvane; Robbins, Trevor W; IMAGEN consortium BMC medicine. 33054810 2020 Oct 15;
Greater male than female variability in regional brain structure across the lifespan. Wierenga, Lara M; Doucet, Gaelle E; Dima, Danai; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andreassen, Ole A; Anticevic, Alan; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; den Braber, Anouk; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Calhoun, Vince D; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Chaim-Avancini, Tiffany M; Ching, Christopher Rk; Clark, Vincent P; Conrod, Patricia J; Conzelmann, Annette; Crivello, Fabrice; Davey, Christopher G; Dickie, Erin W; Ehrlich, Stefan; Van't Ent, Dennis; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Fuentes-Claramonte, Paola; de Geus, Eco Jc; Di Giorgio, Annabella; Glahn, David C; Gotlib, Ian H; Grabe, Hans J; Gruber, Oliver; Gruner, Patricia; Gur, Raquel E; Gur, Ruben C; Gurholt, Tiril P; de Haan, Lieuwe; Haatveit, Beathe; Harrison, Ben J; Hartman, Catharina A; Hatton, Sean N; Heslenfeld, Dirk J; van den Heuvel, Odile A; Hickie, Ian B; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony C; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kalnin, Andrew J; Karolinska Schizophrenia Project (KaSP) Consortium; Klein, Marieke; Koenders, Laura; Kolskår, Knut K; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lazaro, Luisa; Lebedeva, Irina S; Lee, Phil H; Lochner, Christine; Machielsen, Marise Wj; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Brenna C; McDonald, Colm; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; van der Meer, Dennis; Menchón, José M; Naaijen, Jilly; Nyberg, Lars; Oosterlaan, Jaap; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Radua, Joaquim; Reif, Andreas; Richard, Geneviève; Roffman, Joshua L; Rosa, Pedro Gp; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Sim, Kang; Simmons, Andrew; Smoller, Jordan W; Sommer, Iris E; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Szeszko, Philip R; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Trollor, Julian N; Uhlmann, Anne; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Wang, Lei; Wang, Yang; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather C; Williams, Steven Cr; Wittfeld, Katharina; Wolf, Daniel H; Wright, Margaret J; Yoncheva, Yuliya N; Zanetti, Marcus V; Ziegler, Georg C; de Zubicaray, Greig I; Thompson, Paul M; Crone, Eveline A; Frangou, Sophia; Tamnes, Christian K Human brain mapping. 33044802 2020 Oct 12;
Structural neuroimaging biomarkers for obsessive-compulsive disorder in the ENIGMA-OCD consortium: medication matters. Bruin, Willem B; Taylor, Luke; Thomas, Rajat M; Shock, Jonathan P; Zhutovsky, Paul; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Assogna, Francesca; Benedetti, Francesco; Beucke, Jan C; Boedhoe, Premika S W; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Brennan, Brian P; Buitelaar, Jan K; Calvo, Rosa; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Ely, Benjamin A; Feusner, Jamie D; Fitzgerald, Kate D; Fouche, Jean-Paul; Fridgeirsson, Egill A; Gruner, Patricia; Gürsel, Deniz A; Hauser, Tobias U; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Hu, Hao; Huyser, Chaim; Ivanov, Iliyan; James, Anthony; Jaspers-Fayer, Fern; Kathmann, Norbert; Kaufmann, Christian; Koch, Kathrin; Kuno, Masaru; Kvale, Gerd; Kwon, Jun Soo; Liu, Yanni; Lochner, Christine; Lázaro, Luisa; Marques, Paulo; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Moreira, Pedro S; Morer, Astrid; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika L; O'Neill, Joseph; Pariente, Jose C; Perriello, Chris; Piacentini, John; Piras, Fabrizio; Piras, Federica; Reddy, Y C Janardhan; Rus-Oswald, Oana G; Sakai, Yuki; Sato, João R; Schmaal, Lianne; Shimizu, Eiji; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Tolin, David F; Venkatasubramanian, Ganesan; Wang, Zhen; Yun, Je-Yeon; van Rooij, Daan; ENIGMA-OCD Working Group; Thompson, Paul M; van den Heuvel, Odile A; Stein, Dan J; van Wingen, Guido A Translational psychiatry. 33033241 2020 Oct 08;
Identifiers.org: Compact Identifier services in the cloud. Bernal-Llinares, Manuel; Ferrer-Gómez, Javier; Juty, Nick; Goble, Carole; Wimalaratne, Sarala M; Hermjakob, Henning Bioinformatics (Oxford, England) 33031499 2021 07 19
Neuroimaging Association Scores: reliability and validity of aggregate measures of brain structural features linked to mental disorders in youth. Axelrud, Luiza Kvitko; Simioni, André Rafael; Pine, Daniel Samuel; Winkler, Anderson Marcelo; Pan, Pedro Mario; Sato, João Ricardo; Zugman, André; Parker, Nadine; Picon, Felipe; Jackowski, Andrea; Hoexter, Marcelo Queiroz; IMAGEN Consortium; Barker, Gareth; Martinot, Jean-Luc; Martinot, Marie Laure Paillère; Satterthwaite, Theodore; Rohde, Luis Augusto; Milham, Michael; Barker, Edward Dylan; Salum, Giovanni Abrahão European child & adolescent psychiatry 33030612 2021 Dec
Intelligence, educational attainment, and brain structure in those at familial high-risk for schizophrenia or bipolar disorder. de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Alonso-Lana, Silvia; Bearden, Carrie E; Bertolino, Alessandro; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Canales-Rodríguez, Erick J; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Del Mar Bonnin, Caterina; Demro, Caroline; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fatjó-Vilas, Mar; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goikolea, Jose M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hidiroglu Ongun, Ceren; Hillegers, Manon H J; Houenou, Josselin; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Nabulsi, Leila; Newport, Jason; Olman, Cheryl A; van Os, Jim; Overs, Bronwyn J; Ozerdem, Aysegul; Pergola, Giulio; Picchioni, Marco M; Piguet, Camille; Pomarol-Clotet, Edith; Radua, Joaquim; Ramsay, Ian S; Richter, Anja; Roberts, Gloria; Salvador, Raymond; Saricicek Aydogan, Aybala; Sarró, Salvador; Schofield, Peter R; Simsek, Esma M; Simsek, Fatma; Soares, Jair C; Sponheim, Scott R; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Vieta, Eduard; Walter, Henrik; Weinberger, Daniel R; Whalley, Heather C; Wu, Mon-Ju; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; Thomopoulos, Sophia I; van Erp, Theo G M; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E M Human brain mapping. 33027543 2020 Oct 07;
Intracranial and subcortical volumes in adolescents with early-onset psychosis: A multisite mega-analysis from the ENIGMA consortium. Gurholt, Tiril P; Lonning, Vera; Nerland, Stener; Jørgensen, Kjetil N; Haukvik, Unn K; Alloza, Clara; Arango, Celso; Barth, Claudia; Bearden, Carrie E; Berk, Michael; Bohman, Hannes; Dandash, Orwa; Díaz-Caneja, Covadonga M; Edbom, Carl T; van Erp, Theo G M; Fett, Anne-Kathrin J; Frangou, Sophia; Goldstein, Benjamin I; Grigorian, Anahit; Jahanshad, Neda; James, Anthony C; Janssen, Joost; Johannessen, Cecilie; Karlsgodt, Katherine H; Kempton, Matthew J; Kochunov, Peter; Krabbendam, Lydia; Kyriakopoulos, Marinos; Lundberg, Mathias; MacIntosh, Bradley J; Rund, Bjørn Rishovd; Smelror, Runar E; Sultan, Alysha; Tamnes, Christian K; Thomopoulos, Sophia I; Vajdi, Ariana; Wedervang-Resell, Kirsten; Myhre, Anne M; Andreassen, Ole A; Thompson, Paul M; Agartz, Ingrid; ENIGMA-EOP Working Group Human brain mapping 33017498 2022 Jan
Investigating genetic drivers of dermatomyositis pathogenesis using meta-analysis. Aljabban, Jihad; Syed, Saad; Syed, Sharjeel; Rohr, Michael; Weisleder, Noah; McElhanon, Kevin E; Hasan, Laith; Safeer, Laraib; Hoffman, Kalyn; Aljabban, Nabeal; Mukhtar, Mohamed; Adapa, Nikhil; Allarakhia, Zahir; Panahiazar, Maryam; Neuhaus, Isaac; Kim, Susan; Hadley, Dexter; Jarjour, Wael Heliyon 33015383 2020 Sep
Substance Use Initiation, Particularly Alcohol, in Drug-Naive Adolescents: Possible Predictors and Consequences From a Large Cohort Naturalistic Study. Ivanov, Iliyan; Parvaz, Muhammad A; Velthorst, Eva; Shaik, Riaz B; Sandin, Sven; Gan, Gabriela; Spechler, Philip; Albaugh, Matthew D; Chaarani, Bader; Mackey, Scott; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 33011213 2021 05
A semantic similarity based methodology for predicting protein-protein interactions: Evaluation with P53-interacting kinases. Cox, Steven; Dong, Xialan; Rai, Ruhi; Christopherson, Laura; Zheng, Weifan; Tropsha, Alexander; Schmitt, Charles Journal of biomedical informatics 33007449 2020 11
Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective. Erdemir, Ahmet; Mulugeta, Lealem; Ku, Joy P; Drach, Andrew; Horner, Marc; Morrison, Tina M; Peng, Grace C Y; Vadigepalli, Rajanikanth; Lytton, William W; Myers Jr, Jerry G Journal of translational medicine. 32993675 2020 09 29;
Graph-based regularization for regression problems with alignment and highly-correlated designs. Li, Yuan; Mark, Benjamin; Raskutti, Garvesh; Willett, Rebecca; Song, Hyebin; Neiman, David SIAM journal on mathematics of data science. 32968717 2020;
Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults. Hofer, Edith; Roshchupkin, Gennady V; Adams, Hieab H H; Knol, Maria J; Lin, Honghuang; Li, Shuo; Zare, Habil; Ahmad, Shahzad; Armstrong, Nicola J; Satizabal, Claudia L; Bernard, Manon; Bis, Joshua C; Gillespie, Nathan A; Luciano, Michelle; Mishra, Aniket; Scholz, Markus; Teumer, Alexander; Xia, Rui; Jian, Xueqiu; Mosley, Thomas H; Saba, Yasaman; Pirpamer, Lukas; Seiler, Stephan; Becker, James T; Carmichael, Owen; Rotter, Jerome I; Psaty, Bruce M; Lopez, Oscar L; Amin, Najaf; van der Lee, Sven J; Yang, Qiong; Himali, Jayandra J; Maillard, Pauline; Beiser, Alexa S; DeCarli, Charles; Karama, Sherif; Lewis, Lindsay; Harris, Mat; Bastin, Mark E; Deary, Ian J; Veronica Witte, A; Beyer, Frauke; Loeffler, Markus; Mather, Karen A; Schofield, Peter R; Thalamuthu, Anbupalam; Kwok, John B; Wright, Margaret J; Ames, David; Trollor, Julian; Jiang, Jiyang; Brodaty, Henry; Wen, Wei; Vernooij, Meike W; Hofman, Albert; Uitterlinden, André G; Niessen, Wiro J; Wittfeld, Katharina; Bülow, Robin; Völker, Uwe; Pausova, Zdenka; Bruce Pike, G; Maingault, Sophie; Crivello, Fabrice; Tzourio, Christophe; Amouyel, Philippe; Mazoyer, Bernard; Neale, Michael C; Franz, Carol E; Lyons, Michael J; Panizzon, Matthew S; Andreassen, Ole A; Dale, Anders M; Logue, Mark; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie N; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Pizzagalli, Fabrizio; Stein, Jason L; Thompson, Paul M; Medland, Sarah E; ENIGMA consortium; Sachdev, Perminder S; Kremen, William S; Wardlaw, Joanna M; Villringer, Arno; van Duijn, Cornelia M; Grabe, Hans J; Longstreth Jr, William T; Fornage, Myriam; Paus, Tomas; Debette, Stephanie; Arfan Ikram, M; Schmidt, Helena; Schmidt, Reinhold; Seshadri, Sudha Nature communications. 32963231 2020 09 22;
PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments. Liu, Peng; Soukup, Alexandra A; Bresnick, Emery H; Dewey, Colin N; Kele?, Sündüz Genome research. 32958497 2020 Nov;
The reliability and heritability of cortical folds and their genetic correlations across hemispheres. Pizzagalli, Fabrizio; Auzias, Guillaume; Yang, Qifan; Mathias, Samuel R; Faskowitz, Joshua; Boyd, Joshua D; Amini, Armand; Rivière, Denis; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Mangin, Jean-François; Glahn, David C; Blangero, John; Wright, Margaret J; Thompson, Paul M; Kochunov, Peter; Jahanshad, Neda Communications biology. 32934300 2020 Sep 15;
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Cristea, Ileana M; Corrales, Fernando J; Lindskog, Cecilia; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen R; Snyder, Michael P; Baker, Mark S; Bandeira, Nuno; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W Journal of proteome research. 32931287 2020 Dec 04;
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. Choi, Meena; Carver, Jeremy; Chiva, Cristina; Tzouros, Manuel; Huang, Ting; Tsai, Tsung-Heng; Pullman, Benjamin; Bernhardt, Oliver M; Hüttenhain, Ruth; Teo, Guo Ci; Perez-Riverol, Yasset; Muntel, Jan; Müller, Maik; Goetze, Sandra; Pavlou, Maria; Verschueren, Erik; Wollscheid, Bernd; Nesvizhskii, Alexey I; Reiter, Lukas; Dunkley, Tom; Sabidó, Eduard; Bandeira, Nuno; Vitek, Olga Nature methods. 32929271 2020 Oct;
Suitability of administrative claims databases for bariatric surgery research - is the glass half-full or half-empty? Li, Xiaojuan; Lewis, Kristina H; Callaway, Katherine; Wharam, J Frank; Toh, Sengwee BMC medical research methodology. 32894060 2020 Sep 07;
Ten simple rules for an inclusive summer coding program for non-computer-science undergraduates. Pennings, Pleuni; Banuelos, Mayra M; Catalan, Francisca L; Caudill, Victoria R; Chakalov, Bozhidar; Hernandez, Selena; Jones, Jeanice; Okorie, Chinomnso; Modrek, Sepideh; Rohlfs, Rori; Adelstein, Nicole PLoS computational biology 32881872 2020 09
Literature-Wide Association Studies (LWAS) for a Rare Disease: Drug Repurposing for Inflammatory Breast Cancer. Ji, Xiaojia; Jin, Chunming; Dong, Xialan; Dixon, Maria S; Williams, Kevin P; Zheng, Weifan Molecules (Basel, Switzerland) 32872166 2020 Aug 28
mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements. Bhamber, Ranjeet S; Jankevics, Andris; Deutsch, Eric W; Jones, Andrew R; Dowsey, Andrew W Journal of proteome research 32864978 2021 Jan 01
Neural Correlates of Adolescent Irritability and Its Comorbidity With Psychiatric Disorders. Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Spechler, Philip A; Potter, Alexandra; Banaschewski, Tobias; Millenet, Sabina; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Paus, Tomáš; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Stringaris, Argyris; Higgins, Stephen T; Schumann, Gunter; Garavan, Hugh; Althoff, Robert R; IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 32860907 2020 12
Compressive Big Data Analytics: An ensemble meta-algorithm for high-dimensional multisource datasets. Marino, Simeone; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Toga, Arthur W; Zhao, Lu; Jian, Yingsi; Yang, Yichen; Chen, Yehu; Wu, Qiucheng; Wild, Jessica; Cummings, Brandon; Dinov, Ivo D PloS one. 32857775 2020;
Common and gender-specific associations with cocaine use on gray matter volume: Data from the ENIGMA addiction working group. Rabin, Rachel A; Mackey, Scott; Parvaz, Muhammad A; Cousijn, Janna; Li, Chiang-Shan; Pearlson, Godfrey; Schmaal, Lianne; Sinha, Rajita; Stein, Elliot; Veltman, Dick; Thompson, Paul M; Conrod, Patricia; Garavan, Hugh; Alia-Klein, Nelly; Goldstein, Rita Z Human brain mapping 32857473 2022 Jan
Feature-based molecular networking in the GNPS analysis environment. Nothias, Louis-Félix; Petras, Daniel; Schmid, Robin; Dührkop, Kai; Rainer, Johannes; Sarvepalli, Abinesh; Protsyuk, Ivan; Ernst, Madeleine; Tsugawa, Hiroshi; Fleischauer, Markus; Aicheler, Fabian; Aksenov, Alexander A; Alka, Oliver; Allard, Pierre-Marie; Barsch, Aiko; Cachet, Xavier; Caraballo-Rodriguez, Andres Mauricio; Da Silva, Ricardo R; Dang, Tam; Garg, Neha; Gauglitz, Julia M; Gurevich, Alexey; Isaac, Giorgis; Jarmusch, Alan K; Kameník, Zden?k; Kang, Kyo Bin; Kessler, Nikolas; Koester, Irina; Korf, Ansgar; Le Gouellec, Audrey; Ludwig, Marcus; Martin H, Christian; McCall, Laura-Isobel; McSayles, Jonathan; Meyer, Sven W; Mohimani, Hosein; Morsy, Mustafa; Moyne, Oriane; Neumann, Steffen; Neuweger, Heiko; Nguyen, Ngoc Hung; Nothias-Esposito, Melissa; Paolini, Julien; Phelan, Vanessa V; Pluskal, Tomá?; Quinn, Robert A; Rogers, Simon; Shrestha, Bindesh; Tripathi, Anupriya; van der Hooft, Justin J J; Vargas, Fernando; Weldon, Kelly C; Witting, Michael; Yang, Heejung; Zhang, Zheng; Zubeil, Florian; Kohlbacher, Oliver; Böcker, Sebastian; Alexandrov, Theodore; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C Nature methods. 32839597 2020 09;
Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis. Adams, Taylor S; Schupp, Jonas C; Poli, Sergio; Ayaub, Ehab A; Neumark, Nir; Ahangari, Farida; Chu, Sarah G; Raby, Benjamin A; DeIuliis, Giuseppe; Januszyk, Michael; Duan, Qiaonan; Arnett, Heather A; Siddiqui, Asim; Washko, George R; Homer, Robert; Yan, Xiting; Rosas, Ivan O; Kaminski, Naftali Science advances 32832599 2020 07
Neuroimaging PheWAS (Phenome-Wide Association Study): A Free Cloud-Computing Platform for Big-Data, Brain-Wide Imaging Association Studies. Zhao, Lu; Batta, Ishaan; Matloff, William; O'Driscoll, Caroline; Hobel, Samuel; Toga, Arthur W Neuroinformatics 32822005 2020 Aug 21
DataRemix: a universal data transformation for optimal inference from gene expression datasets. Mao, Weiguang; Rahimikollu, Javad; Hausler, Ryan; Chikina, Maria Bioinformatics (Oxford, England) 32821903 2021 05 17
A review investigating the relationship between cannabis use and adolescent cognitive functioning. Cyrus, Elena; Coudray, Makella S; Kiplagat, Sandra; Mariano, Yandra; Noel, Ines; Galea, Jerome T; Hadley, Dexter; Dévieux, Jessy G; Wagner, Eric Current opinion in psychology 32818908 2021 04
White matter abnormalities across different epilepsy syndromes in adults: an ENIGMA-Epilepsy study. Hatton, Sean N; Huynh, Khoa H; Bonilha, Leonardo; Abela, Eugenio; Alhusaini, Saud; Altmann, Andre; Alvim, Marina K M; Balachandra, Akshara R; Bartolini, Emanuele; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris; Bargallo, Núria; Caldairou, Benoit; Caligiuri, Maria E; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Davoodi-Bojd, Esmaeil; Desmond, Patricia M; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Duncan, John S; Focke, Niels K; Foley, Sonya F; Gambardella, Antonio; Gleichgerrcht, Ezequiel; Guerrini, Renzo; Hamandi, Khalid; Ishikawa, Akari; Keller, Simon S; Kochunov, Peter V; Kotikalapudi, Raviteja; Kreilkamp, Barbara A K; Kwan, Patrick; Labate, Angelo; Langner, Soenke; Lenge, Matteo; Liu, Min; Lui, Elaine; Martin, Pascal; Mascalchi, Mario; Moreira, José C V; Morita-Sherman, Marcia E; O'Brien, Terence J; Pardoe, Heath R; Pariente, José C; Ribeiro, Letícia F; Richardson, Mark P; Rocha, Cristiane S; Rodríguez-Cruces, Raúl; Rosenow, Felix; Severino, Mariasavina; Sinclair, Benjamin; Soltanian-Zadeh, Hamid; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Tortora, Domenico; Velakoulis, Dennis; Vezzani, Annamaria; Vivash, Lucy; von Podewils, Felix; Vos, Sjoerd B; Weber, Bernd; Winston, Gavin P; Yasuda, Clarissa L; Zhu, Alyssa H; Thompson, Paul M; Whelan, Christopher D; Jahanshad, Neda; Sisodiya, Sanjay M; McDonald, Carrie R Brain : a journal of neurology. 32814957 2020 Aug 01;
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types. Funk, Cory C; Casella, Alex M; Jung, Segun; Richards, Matthew A; Rodriguez, Alex; Shannon, Paul; Donovan-Maiye, Rory; Heavner, Ben; Chard, Kyle; Xiao, Yukai; Glusman, Gustavo; Ertekin-Taner, Nilufer; Golde, Todd E; Toga, Arthur; Hood, Leroy; Van Horn, John D; Kesselman, Carl; Foster, Ian; Madduri, Ravi; Price, Nathan D; Ament, Seth A Cell reports. 32814038 2020 Aug 18;
Brain structure and habitat: Do the brains of our children tell us where they have been brought up? Kühn, Simone; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Meyer-Lindenberg, Andreas; Gallinat, Jürgen NeuroImage 32800993 2020 11 15
The clinical utility of proton magnetic resonance spectroscopy in traumatic brain injury: recommendations from the ENIGMA MRS working group. Bartnik-Olson, Brenda L; Alger, Jeffry R; Babikian, Talin; Harris, Ashley D; Holshouser, Barbara; Kirov, Ivan I; Maudsley, Andrew A; Thompson, Paul M; Dennis, Emily L; Tate, David F; Wilde, Elisabeth A; Lin, Alexander Brain imaging and behavior 32797399 2020 Aug 14
Exploration of PCORnet Data Resources for Assessing Use of Molecular-Guided Cancer Treatment. Carnahan, Ryan M; Waitman, Lemuel R; Charlton, Mary E; Schroeder, Mary C; Bossler, Aaron D; Campbell, W Scott; Campbell, James R; McDowell, Bradley D; Smith, Nicholas C; Gryzlak, Brian M; Chrischilles, Elizabeth A JCO clinical cancer informatics. 32795185 2020 Aug;
Deep neural networks enable quantitative movement analysis using single-camera videos. Kidzi?ski, ?ukasz; Yang, Bryan; Hicks, Jennifer L; Rajagopal, Apoorva; Delp, Scott L; Schwartz, Michael H Nature communications. 32792511 2020 08 13;
Correction to "Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold". Ferguson, Fleur M; Liu, Yan; Harshbarger, Wayne; Huang, Ling; Wang, Jinhua; Deng, Xianming; Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander; Muthuswamy, Senthil; Westover, Kenneth D; Gray, Nathanael S Journal of medicinal chemistry 32790356 2020 Sep 10
A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia. Luo, Yuan; Eran, Alal; Palmer, Nathan; Avillach, Paul; Levy-Moonshine, Ami; Szolovits, Peter; Kohane, Isaac S Nature medicine. 32778826 2020 Sep;
Cross-Modal Data Programming Enables Rapid Medical Machine Learning. Dunnmon, Jared A; Ratner, Alexander J; Saab, Khaled; Khandwala, Nishith; Markert, Matthew; Sagreiya, Hersh; Goldman, Roger; Lee-Messer, Christopher; Lungren, Matthew P; Rubin, Daniel L; Ré, Christopher Patterns (New York, N.Y.). 32776018 2020 May 08;
Longitudinal associations between amygdala reactivity and cannabis use in a large sample of adolescents. Spechler, Philip A; Chaarani, Bader; Orr, Catherine; Albaugh, Matthew D; Fontaine, Nicholas R; Higgins, Stephen T; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Artiges, Eric; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh Psychopharmacology 32772145 2020 Nov
ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants. Manjunath, Mohith; Zhang, Yi; Zhang, Shilu; Roy, Sushmita; Perez-Pinera, Pablo; Song, Jun S Frontiers in genetics. 32765587 2020;
Notifications to Improve Engagement With an Alcohol Reduction App: Protocol for a Micro-Randomized Trial. Bell, Lauren; Garnett, Claire; Qian, Tianchen; Perski, Olga; Potts, Henry W W; Williamson, Elizabeth JMIR research protocols. 32763878 2020 Aug 07;
Performing Group Difference Testing on Graph Structured Data from GANs: Analysis and Applications in Neuroimaging. Dinh, Tuan Quang; Xiong, Yunyang; Huang, Zhichun; Vo, Tien; Mishra, Akshay; Kim, Won Hwa; Ravi, Sathya; Singh, Vikas IEEE transactions on pattern analysis and machine intelligence 32763848 2020 Aug 07
Reproducible Machine Learning Methods for Lung Cancer Detection Using Computed Tomography Images: Algorithm Development and Validation. Yu, Kun-Hsing; Lee, Tsung-Lu Michael; Yen, Ming-Hsuan; Kou, S C; Rosen, Bruce; Chiang, Jung-Hsien; Kohane, Isaac S Journal of medical Internet research 32755895 2020 08 05
Chemical Biology Toolkit for DCLK1 Reveals Connection to RNA Processing. Liu, Yan; Ferguson, Fleur M; Li, Lianbo; Kuljanin, Miljan; Mills, Caitlin E; Subramanian, Kartik; Harshbarger, Wayne; Gondi, Sudershan; Wang, Jinhua; Sorger, Peter K; Mancias, Joseph D; Gray, Nathanael S; Westover, Kenneth D Cell chemical biology. 32755567 2020 Aug 04;
Behavioral Differences Between Subject Groups Identified Using Smart Homes and Change Point Detection. Sprint, Gina; Cook, Diane J; Fritz, Roschelle IEEE journal of biomedical and health informatics 32750924 2021 Feb
Ethical issues in global neuroimaging genetics collaborations. Palk, Andrea; Illes, Judy; Thompson, Paul M; Stein, Dan J NeuroImage. 32736000 2020 11 01;
Challenges and opportunities for neuroimaging in young patients with traumatic brain injury: a coordinated effort towards advancing discovery from the ENIGMA pediatric moderate/severe TBI group. Dennis, Emily L; Caeyenberghs, Karen; Asarnow, Robert F; Babikian, Talin; Bartnik-Olson, Brenda; Bigler, Erin D; Figaji, Anthony; Giza, Christopher C; Goodrich-Hunsaker, Naomi J; Hodges, Cooper B; Hoskinson, Kristen R; Königs, Marsh; Levin, Harvey S; Lindsey, Hannah M; Livny, Abigail; Max, Jeffrey E; Merkley, Tricia L; Newsome, Mary R; Olsen, Alexander; Ryan, Nicholas P; Spruiell, Matthew S; Suskauer, Stacy J; Thomopoulos, Sophia I; Ware, Ashley L; Watson, Christopher G; Wheeler, Anne L; Yeates, Keith Owen; Zielinski, Brandon A; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A Brain imaging and behavior 32734437 2020 Jul 30
The anatomy of a distributed predictive modeling framework: online learning, blockchain network, and consensus algorithm. Kuo, Tsung-Ting JAMIA open 32734160 2020 Jul
What we learn about bipolar disorder from large-scale neuroimaging: Findings and future directions from the ENIGMA Bipolar Disorder Working Group. Ching, Christopher R K; Hibar, Derrek P; Gurholt, Tiril P; Nunes, Abraham; Thomopoulos, Sophia I; Abé, Christoph; Agartz, Ingrid; Brouwer, Rachel M; Cannon, Dara M; de Zwarte, Sonja M C; Eyler, Lisa T; Favre, Pauline; Hajek, Tomas; Haukvik, Unn K; Houenou, Josselin; Landén, Mikael; Lett, Tristram A; McDonald, Colm; Nabulsi, Leila; Patel, Yash; Pauling, Melissa E; Paus, Tomas; Radua, Joaquim; Soeiro-de-Souza, Marcio G; Tronchin, Giulia; van Haren, Neeltje E M; Vieta, Eduard; Walter, Henrik; Zeng, Ling-Li; Alda, Martin; Almeida, Jorge; Alnaes, Dag; Alonso-Lana, Silvia; Altimus, Cara; Bauer, Michael; Baune, Bernhard T; Bearden, Carrie E; Bellani, Marcella; Benedetti, Francesco; Berk, Michael; Bilderbeck, Amy C; Blumberg, Hilary P; Bøen, Erlend; Bollettini, Irene; Del Mar Bonnin, Caterina; Brambilla, Paolo; Canales-Rodríguez, Erick J; Caseras, Xavier; Dandash, Orwa; Dannlowski, Udo; Delvecchio, Giuseppe; Díaz-Zuluaga, Ana M; Dima, Danai; Duchesnay, Édouard; Elvsåshagen, Torbjørn; Fears, Scott C; Frangou, Sophia; Fullerton, Janice M; Glahn, David C; Goikolea, Jose M; Green, Melissa J; Grotegerd, Dominik; Gruber, Oliver; Haarman, Bartholomeus C M; Henry, Chantal; Howells, Fleur M; Ives-Deliperi, Victoria; Jansen, Andreas; Kircher, Tilo T J; Knöchel, Christian; Kramer, Bernd; Lafer, Beny; López-Jaramillo, Carlos; Machado-Vieira, Rodrigo; MacIntosh, Bradley J; Melloni, Elisa M T; Mitchell, Philip B; Nenadic, Igor; Nery, Fabiano; Nugent, Allison C; Oertel, Viola; Ophoff, Roel A; Ota, Miho; Overs, Bronwyn J; Pham, Daniel L; Phillips, Mary L; Pineda-Zapata, Julian A; Poletti, Sara; Polosan, Mircea; Pomarol-Clotet, Edith; Pouchon, Arnaud; Quidé, Yann; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Schene, Aart H; Sim, Kang; Soares, Jair C; Stäblein, Michael; Stein, Dan J; Tamnes, Christian K; Thomaidis, Georgios V; Upegui, Cristian Vargas; Veltman, Dick J; Wessa, Michèle; Westlye, Lars T; Whalley, Heather C; Wolf, Daniel H; Wu, Mon-Ju; Yatham, Lakshmi N; Zarate, Carlos A; Thompson, Paul M; Andreassen, Ole A; ENIGMA Bipolar Disorder Working Group Human brain mapping 32725849 2022 Jan
The ENIGMA sports injury working group:- an international collaboration to further our understanding of sport-related brain injury. Koerte, Inga K; Esopenko, Carrie; Hinds 2nd, Sidney R; Shenton, Martha E; Bonke, Elena M; Bazarian, Jeffrey J; Bickart, Kevin C; Bigler, Erin D; Bouix, Sylvain; Buckley, Thomas A; Choe, Meeryo C; Echlin, Paul S; Gill, Jessica; Giza, Christopher C; Hayes, Jasmeet; Hodges, Cooper B; Irimia, Andrei; Johnson, Paula K; Kenney, Kimbra; Levin, Harvey S; Lin, Alexander P; Lindsey, Hannah M; Lipton, Michael L; Max, Jeffrey E; Mayer, Andrew R; Meier, Timothy B; Merchant-Borna, Kian; Merkley, Tricia L; Mills, Brian D; Newsome, Mary R; Porfido, Tara; Stephens, Jaclyn A; Tartaglia, Maria Carmela; Ware, Ashley L; Zafonte, Ross D; Zeineh, Michael M; Thompson, Paul M; Tate, David F; Dennis, Emily L; Wilde, Elisabeth A; Baron, David Brain imaging and behavior. 32720179 2020 Jul 27;
Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services. Krissaane, Inès; De Niz, Carlos; Gutiérrez-Sacristán, Alba; Korodi, Gabor; Ede, Nneka; Kumar, Ranjay; Lyons, Jessica; Manrai, Arjun; Patel, Chirag; Kohane, Isaac; Avillach, Paul Journal of the American Medical Informatics Association : JAMIA 32719837 2020 09 01
iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching. Kuo, Tsung-Ting; Jiang, Xiaoqian; Tang, Haixu; Wang, XiaoFeng; Bath, Tyler; Bu, Diyue; Wang, Lei; Harmanci, Arif; Zhang, Shaojie; Zhi, Degui; Sofia, Heidi J; Ohno-Machado, Lucila BMC medical genomics. 32693816 2020 Jul 21;
Using blockchain to log genome dataset access: efficient storage and query. Gürsoy, Gamze; Bjornson, Robert; Green, Molly E; Gerstein, Mark BMC medical genomics. 32693796 2020 Jul 21;
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes. Shafin, Kishwar; Pesout, Trevor; Lorig-Roach, Ryan; Haukness, Marina; Olsen, Hugh E; Bosworth, Colleen; Armstrong, Joel; Tigyi, Kristof; Maurer, Nicholas; Koren, Sergey; Sedlazeck, Fritz J; Marschall, Tobias; Mayes, Simon; Costa, Vania; Zook, Justin M; Liu, Kelvin J; Kilburn, Duncan; Sorensen, Melanie; Munson, Katy M; Vollger, Mitchell R; Monlong, Jean; Garrison, Erik; Eichler, Evan E; Salama, Sofie; Haussler, David; Green, Richard E; Akeson, Mark; Phillippy, Adam; Miga, Karen H; Carnevali, Paolo; Jain, Miten; Paten, Benedict Nature biotechnology. 32686750 2020 09;
Applying surface-based morphometry to study ventricular abnormalities of cognitively unimpaired subjects prior to clinically significant memory decline. Dong, Qunxi; Zhang, Wen; Stonnington, Cynthia M; Wu, Jianfeng; Gutman, Boris A; Chen, Kewei; Su, Yi; Baxter, Leslie C; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, Yalin NeuroImage. Clinical. 32683323 2020;
Learning from history: do not flatten the curve of antiviral research! Bobrowski, Tesia; Melo-Filho, Cleber C; Korn, Daniel; Alves, Vinicius M; Popov, Konstantin I; Auerbach, Scott; Schmitt, Charles; Moorman, Nathaniel J; Muratov, Eugene N; Tropsha, Alexander Drug discovery today. 32679173 2020 Jul 15;
SCAM Detective: Accurate Predictor of Small, Colloidally Aggregating Molecules. Alves, Vinicius M; Capuzzi, Stephen J; Braga, Rodolpho C; Korn, Daniel; Hochuli, Joshua E; Bowler, Kyle H; Yasgar, Adam; Rai, Ganesha; Simeonov, Anton; Muratov, Eugene N; Zakharov, Alexey V; Tropsha, Alexander Journal of chemical information and modeling 32678597 2020 08 24
Pred-Skin: A Web Portal for Accurate Prediction of Human Skin Sensitizers. Borba, Joyce V B; Braga, Rodolpho C; Alves, Vinicius M; Muratov, Eugene N; Kleinstreuer, Nicole; Tropsha, Alexander; Andrade, Carolina Horta Chemical research in toxicology 32673477 2021 02 15
Age and morphology of posterior communicating artery aneurysms. Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose Scientific reports. 32665589 2020 Jul 14;
Spatial domain analysis predicts risk of colorectal cancer recurrence and infers associated tumor microenvironment networks. Uttam, Shikhar; Stern, Andrew M; Sevinsky, Christopher J; Furman, Samantha; Pullara, Filippo; Spagnolo, Daniel; Nguyen, Luong; Gough, Albert; Ginty, Fiona; Lansing Taylor, D; Chakra Chennubhotla, S Nature communications. 32665557 2020 07 14;
Telomere-to-telomere assembly of a complete human X chromosome. Miga, Karen H; Koren, Sergey; Rhie, Arang; Vollger, Mitchell R; Gershman, Ariel; Bzikadze, Andrey; Brooks, Shelise; Howe, Edmund; Porubsky, David; Logsdon, Glennis A; Schneider, Valerie A; Potapova, Tamara; Wood, Jonathan; Chow, William; Armstrong, Joel; Nature. 32663838 2020 09;
Testing the effectiveness of physical activity advice delivered via text messaging vs. human phone advisors in a Latino population: The On The Move randomized controlled trial design and methods. King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Espinosa, Patricia Rodriguez; Garcia, Dulce; Hauser, Michelle; Done, Monica; Patel, Michele L; Parikh, Nina M; Corral, Cecilia; Ahn, David K Contemporary clinical trials 32659437 2020 08
Privacy-preserving construction of generalized linear mixed model for biomedical computation. Zhu, Rui; Jiang, Chao; Wang, Xiaofeng; Wang, Shuang; Zheng, Hao; Tang, Haixu Bioinformatics (Oxford, England). 32657380 2020 Jul 01;
Disruption and Compensation of Sulcation-based Covariance Networks in Neonatal Brain Growth after Perinatal Injury. Kim, Sharon Y; Liu, Mengting; Hong, Seok-Jun; Toga, Arthur W; Barkovich, A James; Xu, Duan; Kim, Hosung Cerebral cortex (New York, N.Y. : 1991) 32656563 2020 11 03
How do substance use disorders compare to other psychiatric conditions on structural brain abnormalities? A cross-disorder meta-analytic comparison using the ENIGMA consortium findings. Navarri, Xavier; Afzali, Mohammad H; Lavoie, Jacob; Sinha, Rajita; Stein, Dan J; Momenan, Reza; Veltman, Dick J; Korucuoglu, Ozlem; Sjoerds, Zsuzsika; van Holst, Ruth J; Hester, Rob; Orr, Catherine; Cousijn, Janna; Yucel, Murat; Lorenzetti, Valentina; Wiers, Reinout; Jahanshad, Neda; Glahn, David C; Thompson, Paul M; Mackey, Scott; Conrod, Patricia J Human brain mapping 32643841 2022 Jan
Superior breast cancer metastasis risk stratification using an epithelial-mesenchymal-amoeboid transition gene signature. Emad, Amin; Ray, Tania; Jensen, Tor W; Parat, Meera; Natrajan, Rachael; Sinha, Saurabh; Ray, Partha S Breast cancer research : BCR. 32641077 2020 Jul 08;
Discovery of Synergistic and Antagonistic Drug Combinations against SARS-CoV-2 In Vitro. Bobrowski, Tesia; Chen, Lu; Eastman, Richard T; Itkin, Zina; Shinn, Paul; Chen, Catherine; Guo, Hui; Zheng, Wei; Michael, Sam; Simeonov, Anton; Hall, Matthew D; Zakharov, Alexey V; Muratov, Eugene N bioRxiv : the preprint server for biology. 32637956 2020 Jun 30;
ENIGMA-anxiety working group: Rationale for and organization of large-scale neuroimaging studies of anxiety disorders. Bas-Hoogendam, Janna Marie; Groenewold, Nynke A; Aghajani, Moji; Freitag, Gabrielle F; Harrewijn, Anita; Hilbert, Kevin; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Veltman, Dick J; Winkler, Anderson M; Lueken, Ulrike; Pine, Daniel S; van der Wee, Nic J A; Stein, Dan J Human brain mapping. 32618421 2020 Jul 03;
Physiological changes in sleep that affect fMRI inference. Duyn, Jeff H; Ozbay, Pinar S; Chang, Catie; Picchioni, Dante Current opinion in behavioral sciences. 32613032 2020 Jun;
COVID-KOP: Integrating Emerging COVID-19 Data with the ROBOKOP Database. Korn, Daniel; Bobrowski, Tesia; Li, Michael; Kebede, Yaphet; Wang, Patrick; Owen, Phillips; Vaidya, Gaurav; Muratov, Eugene; Chirkova, Rada; Bizon, Chris; Tropsha, Alexander ChemRxiv : the preprint server for chemistry. 32601612 2020 Jun 18;
The IMAGEN study: a decade of imaging genetics in adolescents. Mascarell Mari?i?, Lea; Walter, Henrik; Rosenthal, Annika; Ripke, Stephan; Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Itterman, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Whelan, Robert; Kaminski, Jakob; Schumann, Gunter; Heinz, Andreas; IMAGEN consortium Molecular psychiatry. 32601453 2020 Nov;
Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts. Ding, Hongxu; Bailey, Andrew D; Jain, Miten; Olsen, Hugh; Paten, Benedict Bioinformatics (Oxford, England). 32597959 2020 Dec 08;
Mega-analysis methods in ENIGMA: The experience of the generalized anxiety disorder working group. Zugman, André; Harrewijn, Anita; Cardinale, Elise M; Zwiebel, Hannah; Freitag, Gabrielle F; Werwath, Katy E; Bas-Hoogendam, Janna M; Groenewold, Nynke A; Aghajani, Moji; Hilbert, Kevin; Cardoner, Narcis; Porta-Casteràs, Daniel; Gosnell, Savannah; Salas, Ramiro; Blair, Karina S; Blair, James R; Hammoud, Mira Z; Milad, Mohammed; Burkhouse, Katie; Phan, K Luan; Schroeder, Heidi K; Strawn, Jeffrey R; Beesdo-Baum, Katja; Thomopoulos, Sophia I; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Nielsen, Jared A; Buckner, Randy; Smoller, Jordan W; Mwangi, Benson; Soares, Jair C; Wu, Mon-Ju; Zunta-Soares, Giovana B; Jackowski, Andrea P; Pan, Pedro M; Salum, Giovanni A; Assaf, Michal; Diefenbach, Gretchen J; Brambilla, Paolo; Maggioni, Eleonora; Hofmann, David; Straube, Thomas; Andreescu, Carmen; Berta, Rachel; Tamburo, Erica; Price, Rebecca; Manfro, Gisele G; Critchley, Hugo D; Makovac, Elena; Mancini, Matteo; Meeten, Frances; Ottaviani, Cristina; Agosta, Federica; Canu, Elisa; Cividini, Camilla; Filippi, Massimo; Kosti?, Milutin; Munjiza, Ana; Filippi, Courtney A; Leibenluft, Ellen; Alberton, Bianca A V; Balderston, Nicholas L; Ernst, Monique; Grillon, Christian; Mujica-Parodi, Lilianne R; van Nieuwenhuizen, Helena; Fonzo, Gregory A; Paulus, Martin P; Stein, Murray B; Gur, Raquel E; Gur, Ruben C; Kaczkurkin, Antonia N; Larsen, Bart; Satterthwaite, Theodore D; Harper, Jennifer; Myers, Michael; Perino, Michael T; Yu, Qiongru; Sylvester, Chad M; Veltman, Dick J; Lueken, Ulrike; Van der Wee, Nic J A; Stein, Dan J; Jahanshad, Neda; Thompson, Paul M; Pine, Daniel S; Winkler, Anderson M Human brain mapping. 32596977 2020 Jun 29;
Comparison of de-duplication methods used by WHO Global Antimicrobial Resistance Surveillance System (GLASS) and Japan Nosocomial Infections Surveillance (JANIS) in the surveillance of antimicrobial resistance. Kajihara, Toshiki; Yahara, Koji; Stelling, John; Eremin, Sergey Romualdovich; Tornimbene, Barbara; Thamlikitkul, Visanu; Hirabayashi, Aki; Anzai, Eiko; Wakai, Satoyo; Matsunaga, Nobuaki; Hayakawa, Kayoko; Ohmagari, Norio; Sugai, Motoyuki; Shibayama, Keigo PloS one. 32589639 2020;
Surveillance of antimicrobial resistance and evolving microbial populations in Vermont: 2011-2018. Stelling, John; Read, Jennifer S; Fritch, William; O'Brien, Thomas F; Peters, Rob; Clark, Adam; Bokhari, Marissa; Lion, Mattia; Katwa, Parisha; Kelso, Patsy Expert review of anti-infective therapy. 32552054 2020 Oct;
Wearable microPosters. Lee, James; Sternberg, Paul microPublication biology. 32550402 2019 Nov 26;
Directed remodeling of the mouse gut microbiome inhibits the development of atherosclerosis. Chen, Poshen B; Black, Audrey S; Sobel, Adam L; Zhao, Yannan; Mukherjee, Purba; Molparia, Bhuvan; Moore, Nina E; Aleman Muench, German R; Wu, Jiejun; Chen, Weixuan; Pinto, Antonio F M; Maryanoff, Bruce E; Saghatelian, Alan; Soroosh, Pejman; Torkamani, Ali; Leman, Luke J; Ghadiri, M Reza Nature biotechnology. 32541956 2020 Jun 15;
Subcortical Brain Volume, Regional Cortical Thickness, and Cortical Surface Area Across Disorders: Findings From the ENIGMA ADHD, ASD, and OCD Working Groups. Boedhoe, Premika S W (see original citation for additional authors) The American journal of psychiatry 32539527 2020 09 01
SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins. Chen, Fan; Kele?, Sündüz Genome biology. 32532357 2020 06 12;
Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold. Ferguson, Fleur M; Liu, Yan; Harshbarger, Wayne; Huang, Ling; Wang, Jinhua; Deng, Xianming; Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander; Muthuswamy, Senthil; Westover, Kenneth D; Gray, Nathanael S Journal of medicinal chemistry 32530623 2020 07 23
Automated outbreak detection of hospital-associated pathogens: Value to infection prevention programs. Baker, Meghan A; Yokoe, Deborah S; Stelling, John; Kleinman, Ken; Kaganov, Rebecca E; Letourneau, Alyssa R; Varma, Neha; O'Brien, Thomas; Kulldorff, Martin; Babalola, Damilola; Barrett, Craig; Drees, Marci; Coady, Micaela H; Isaacs, Amanda; Platt, Richard; Huang, Susan S; CDC Prevention Epicenters Program Infection control and hospital epidemiology 32519624 2020 09
Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities. Armstrong, Nicola J; Mather, Karen A; Sargurupremraj, Muralidharan; Knol, Maria J; Malik, Rainer; Satizabal, Claudia L; Yanek, Lisa R; Wen, Wei; Gudnason, Vilmundur G; Dueker, Nicole D; Elliott, Lloyd T; Hofer, Edith; Bis, Joshua; Jahanshad, Neda; Li, Shuo; Logue, Mark A; Luciano, Michelle; Scholz, Markus; Smith, Albert V; Trompet, Stella; Vojinovic, Dina; Xia, Rui; Alfaro-Almagro, Fidel; Ames, David; Amin, Najaf; Amouyel, Philippe; Beiser, Alexa S; Brodaty, Henry; Deary, Ian J; Fennema-Notestine, Christine; Gampawar, Piyush G; Gottesman, Rebecca; Griffanti, Ludovica; Jack Jr, Clifford R; Jenkinson, Mark; Jiang, Jiyang; Kral, Brian G; Kwok, John B; Lampe, Leonie; C M Liewald, David; Maillard, Pauline; Marchini, Jonathan; Bastin, Mark E; Mazoyer, Bernard; Pirpamer, Lukas; Rafael Romero, José; Roshchupkin, Gennady V; Schofield, Peter R; Schroeter, Matthias L; Stott, David J; Thalamuthu, Anbupalam; Trollor, Julian; Tzourio, Christophe; van der Grond, Jeroen; Vernooij, Meike W; Witte, Veronica A; Wright, Margaret J; Yang, Qiong; Morris, Zoe; Siggurdsson, Siggi; Psaty, Bruce; Villringer, Arno; Schmidt, Helena; Haberg, Asta K; van Duijn, Cornelia M; Jukema, J Wouter; Dichgans, Martin; Sacco, Ralph L; Wright, Clinton B; Kremen, William S; Becker, Lewis C; Thompson, Paul M; Mosley, Thomas H; Wardlaw, Joanna M; Ikram, M Arfan; Adams, Hieab H H; Seshadri, Sudha; Sachdev, Perminder S; Smith, Stephen M; Launer, Lenore; Longstreth, William; DeCarli, Charles; Schmidt, Reinhold; Fornage, Myriam; Debette, Stephanie; Nyquist, Paul A Stroke. 32517579 2020 Jul;
A geometric framework for statistical analysis of trajectories with distinct temporal spans. Chakraborty, Rudrasis; Singh, Vikas; Adluru, Nagesh; Vemuri, Baba C Proceedings. IEEE International Conference on Computer Vision. 32514257 2017 Oct;
Reversal of Infected Host Gene Expression Identifies Repurposed Drug Candidates for COVID-19. Xing, Jing; Shankar, Rama; Drelich, Aleksandra; Paithankar, Shreya; Chekalin, Eugene; Dexheimer, Thomas; Rajasekaran, Surender; Tseng, Chien-Te Kent; Chen, Bin bioRxiv : the preprint server for biology. 32511305 2020 Apr 09;
Pre-operative gastrocnemius lengths in gait predict outcomes following gastrocnemius lengthening surgery in children with cerebral palsy. Rajagopal, Apoorva; Kidzi?ski, ?ukasz; McGlaughlin, Alec S; Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael H PloS one. 32502157 2020;
Distributed Regression Analysis Application in Large Distributed Data Networks: Analysis of Precision and Operational Performance. Her, Qoua; Malenfant, Jessica; Zhang, Zilu; Vilk, Yury; Young, Jessica; Tabano, David; Hamilton, Jack; Johnson, Ron; Raebel, Marsha; Boudreau, Denise; Toh, Sengwee JMIR medical informatics. 32496200 2020 Jun 04;
Using Ethereum blockchain to store and query pharmacogenomics data via smart contracts. Gürsoy, Gamze; Brannon, Charlotte M; Gerstein, Mark BMC medical genomics. 32487214 2020 06 01;
The effects of motor modularity on performance, learning and generalizability in upper-extremity reaching: a computational analysis. Al Borno, Mazen; Hicks, Jennifer L; Delp, Scott L Journal of the Royal Society, Interface. 32486950 2020 06;
Macromolecular modeling and design in Rosetta: recent methods and frameworks. Leman, Julia Koehler; Weitzner, Brian D; Lewis, Steven M; Adolf-Bryfogle, Jared; Alam, Nawsad; Alford, Rebecca F; Aprahamian, Melanie; Baker, David; Barlow, Kyle A; Barth, Patrick; Basanta, Benjamin; Bender, Brian J; Blacklock, Kristin; Bonet, Jaume; Boyken, Scott E; Bradley, Phil; Bystroff, Chris; Conway, Patrick; Cooper, Seth; Correia, Bruno E; Coventry, Brian; Das, Rhiju; De Jong, René M; DiMaio, Frank; Dsilva, Lorna; Dunbrack, Roland; Ford, Alexander S; Frenz, Brandon; Fu, Darwin Y; Geniesse, Caleb; Goldschmidt, Lukasz; Gowthaman, Ragul; Gray, Jeffrey J; Gront, Dominik; Guffy, Sharon; Horowitz, Scott; Huang, Po-Ssu; Huber, Thomas; Jacobs, Tim M; Jeliazkov, Jeliazko R; Johnson, David K; Kappel, Kalli; Karanicolas, John; Khakzad, Hamed; Khar, Karen R; Khare, Sagar D; Khatib, Firas; Khramushin, Alisa; King, Indigo C; Kleffner, Robert; Koepnick, Brian; Kortemme, Tanja; Kuenze, Georg; Kuhlman, Brian; Kuroda, Daisuke; Labonte, Jason W; Lai, Jason K; Lapidoth, Gideon; Leaver-Fay, Andrew; Lindert, Steffen; Linsky, Thomas; London, Nir; Lubin, Joseph H; Lyskov, Sergey; Maguire, Jack; Malmström, Lars; Marcos, Enrique; Marcu, Orly; Marze, Nicholas A; Meiler, Jens; Moretti, Rocco; Mulligan, Vikram Khipple; Nerli, Santrupti; Norn, Christoffer; Ó'Conchúir, Shane; Ollikainen, Noah; Ovchinnikov, Sergey; Pacella, Michael S; Pan, Xingjie; Park, Hahnbeom; Pavlovicz, Ryan E; Pethe, Manasi; Pierce, Brian G; Pilla, Kala Bharath; Raveh, Barak; Renfrew, P Douglas; Burman, Shourya S Roy; Rubenstein, Aliza; Sauer, Marion F; Scheck, Andreas; Schief, William; Schueler-Furman, Ora; Sedan, Yuval; Sevy, Alexander M; Sgourakis, Nikolaos G; Shi, Lei; Siegel, Justin B; Silva, Daniel-Adriano; Smith, Shannon; Song, Yifan; Stein, Amelie; Szegedy, Maria; Teets, Frank D; Thyme, Summer B; Wang, Ray Yu-Ruei; Watkins, Andrew; Zimmerman, Lior; Bonneau, Richard Nature methods. 32483333 2020 07;
Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines. Argimón, Silvia; Masim, Melissa A L; Gayeta, June M; Lagrada, Marietta L; Macaranas, Polle K V; Cohen, Victoria; Limas, Marilyn T; Espiritu, Holly O; Palarca, Janziel C; Chilam, Jeremiah; Jamoralin Jr, Manuel C; Villamin, Alfred S; Borlasa, Janice B; Olorosa, Agnettah M; Hernandez, Lara F T; Boehme, Karis D; Jeffrey, Benjamin; Abudahab, Khalil; Hufano, Charmian M; Sia, Sonia B; Stelling, John; Holden, Matthew T G; Aanensen, David M; Carlos, Celia C Nature communications. 32483195 2020 Jun 01;
Cross-sectional and longitudinal associations of family income-to-needs ratio with cortical and subcortical brain volume in adolescent boys and girls. King, Lucy S; Dennis, Emily L; Humphreys, Kathryn L; Thompson, Paul M; Gotlib, Ian H Developmental cognitive neuroscience. 32479375 2020 May 18;
Developing a FHIR-based Framework for Phenome Wide Association Studies: A Case Study with A Pan-Cancer Cohort. Zong, Nansu; Sharma, Deepak K; Yu, Yue; Egan, Jan B; Davila, Jaime I; Wang, Chen; Jiang, Guoqian AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 32477698 2020;
ENIGMA brain injury: Framework, challenges, and opportunities. Dennis, Emily L; Baron, David; Bartnik-Olson, Brenda; Caeyenberghs, Karen; Esopenko, Carrie; Hillary, Frank G; Kenney, Kimbra; Koerte, Inga K; Lin, Alexander P; Mayer, Andrew R; Mondello, Stefania; Olsen, Alexander; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A Human brain mapping 32476212 2022 Jan
ENIGMA MDD: seven years of global neuroimaging studies of major depression through worldwide data sharing. Schmaal, Lianne; Pozzi, Elena; C Ho, Tiffany; van Velzen, Laura S; Veer, Ilya M; Opel, Nils; Van Someren, Eus J W; Han, Laura K M; Aftanas, Lybomir; Aleman, André; Baune, Bernhard T; Berger, Klaus; Blanken, Tessa F; Capitão, Liliana; Couvy-Duchesne, Baptiste; R Cullen, Kathryn; Dannlowski, Udo; Davey, Christopher; Erwin-Grabner, Tracy; Evans, Jennifer; Frodl, Thomas; Fu, Cynthia H Y; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans J; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gutman, Boris A; Hall, Geoffrey B; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Hilland, Eva; Irungu, Benson; Jonassen, Rune; Kelly, Sinead; Kircher, Tilo; Klimes-Dougan, Bonnie; Krug, Axel; Landrø, Nils Inge; Lagopoulos, Jim; Leerssen, Jeanne; Li, Meng; Linden, David E J; MacMaster, Frank P; M McIntosh, Andrew; Mehler, David M A; Nenadi?, Igor; Penninx, Brenda W J H; Portella, Maria J; Reneman, Liesbeth; Rentería, Miguel E; Sacchet, Matthew D; G Sämann, Philipp; Schrantee, Anouk; Sim, Kang; Soares, Jair C; Stein, Dan J; Tozzi, Leonardo; van Der Wee, Nic J A; van Tol, Marie-José; Vermeiren, Robert; Vives-Gilabert, Yolanda; Walter, Henrik; Walter, Martin; Whalley, Heather C; Wittfeld, Katharina; Whittle, Sarah; Wright, Margaret J; Yang, Tony T; Zarate Jr, Carlos; Thomopoulos, Sophia I; Jahanshad, Neda; Thompson, Paul M; Veltman, Dick J Translational psychiatry. 32472038 2020 May 29;
Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA. Radua, Joaquim; Vieta, Eduard; Shinohara, Russell; Kochunov, Peter; Quidé, Yann; Green, Melissa J; Weickert, Cynthia S; Weickert, Thomas; Bruggemann, Jason; Kircher, Tilo; Nenadi?, Igor; Cairns, Murray J; Seal, Marc; Schall, Ulrich; Henskens, Frans; Fullerton, Janice M; Mowry, Bryan; Pantelis, Christos; Lenroot, Rhoshel; Cropley, Vanessa; Loughland, Carmel; Scott, Rodney; Wolf, Daniel; Satterthwaite, Theodore D; Tan, Yunlong; Sim, Kang; Piras, Fabrizio; Spalletta, Gianfranco; Banaj, Nerisa; Pomarol-Clotet, Edith; Solanes, Aleix; Albajes-Eizagirre, Anton; Canales-Rodríguez, Erick J; Sarro, Salvador; Di Giorgio, Annabella; Bertolino, Alessandro; Stäblein, Michael; Oertel, Viola; Knöchel, Christian; Borgwardt, Stefan; du Plessis, Stefan; Yun, Je-Yeon; Kwon, Jun Soo; Dannlowski, Udo; Hahn, Tim; Grotegerd, Dominik; Alloza, Clara; Arango, Celso; Janssen, Joost; Díaz-Caneja, Covadonga; Jiang, Wenhao; Calhoun, Vince; Ehrlich, Stefan; Yang, Kun; Cascella, Nicola G; Takayanagi, Yoichiro; Sawa, Akira; Tomyshev, Alexander; Lebedeva, Irina; Kaleda, Vasily; Kirschner, Matthias; Hoschl, Cyril; Tomecek, David; Skoch, Antonin; van Amelsvoort, Therese; Bakker, Geor; James, Anthony; Preda, Adrian; Weideman, Andrea; Stein, Dan J; Howells, Fleur; Uhlmann, Anne; Temmingh, Henk; López-Jaramillo, Carlos; Díaz-Zuluaga, Ana; Fortea, Lydia; Martinez-Heras, Eloy; Solana, Elisabeth; Llufriu, Sara; Jahanshad, Neda; Thompson, Paul; Turner, Jessica; van Erp, Theo; ENIGMA Consortium collaborators NeuroImage. 32470572 2020 Sep;
The ENIGMA-Epilepsy working group: Mapping disease from large data sets. Sisodiya, Sanjay M; Whelan, Christopher D; Hatton, Sean N; Huynh, Khoa; Altmann, Andre; Ryten, Mina; Vezzani, Annamaria; Caligiuri, Maria Eugenia; Labate, Angelo; Gambardella, Antonio; Ives-Deliperi, Victoria; Meletti, Stefano; Munsell, Brent C; Bonilha, Leonardo; Tondelli, Manuela; Rebsamen, Michael; Rummel, Christian; Vaudano, Anna Elisabetta; Wiest, Roland; Balachandra, Akshara R; Bargalló, Núria; Bartolini, Emanuele; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris; Caldairou, Benoit; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Desmond, Patricia M; Domin, Martin; Duncan, John S; Focke, Niels K; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Jahanshad, Neda; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kowalczyk, Magdalena A; Kreilkamp, Barbara A K; Kwan, Patrick; Lariviere, Sara; Lenge, Matteo; Lopez, Seymour M; Martin, Pascal; Mascalchi, Mario; Moreira, José C V; Morita-Sherman, Marcia E; Pardoe, Heath R; Pariente, Jose C; Raviteja, Kotikalapudi; Rocha, Cristiane S; Rodríguez-Cruces, Raúl; Seeck, Margitta; Semmelroch, Mira K H G; Sinclair, Benjamin; Soltanian-Zadeh, Hamid; Stein, Dan J; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Thomopoulos, Sophia I; Velakoulis, Dennis; Vivash, Lucy; Weber, Bernd; Yasuda, Clarissa Lin; Zhang, Junsong; Thompson, Paul M; McDonald, Carrie R; ENIGMA Consortium Epilepsy Working Group Human brain mapping. 32468614 2020 May 29;
Brain structural abnormalities in obesity: relation to age, genetic risk, and common psychiatric disorders : Evidence through univariate and multivariate mega-analysis including 6420 participants from the ENIGMA MDD working group. Opel, Nils; Thalamuthu, Anbupalam; Milaneschi, Yuri; Grotegerd, Dominik; Flint, Claas; Leenings, Ramona; Goltermann, Janik; Richter, Maike; Hahn, Tim; Woditsch, Georg; Berger, Klaus; Hermesdorf, Marco; McIntosh, Andrew; Whalley, Heather C; Harris, Mathew A; MacMaster, Frank P; Walter, Henrik; Veer, Ilya M; Frodl, Thomas; Carballedo, Angela; Krug, Axel; Nenadic, Igor; Kircher, Tilo; Aleman, Andre; Groenewold, Nynke A; Stein, Dan J; Soares, Jair C; Zunta-Soares, Giovana B; Mwangi, Benson; Wu, Mon-Ju; Walter, Martin; Li, Meng; Harrison, Ben J; Davey, Christopher G; Cullen, Kathryn R; Klimes-Dougan, Bonnie; Mueller, Bryon A; Sämann, Philipp G; Penninx, Brenda; Nawijn, Laura; Veltman, Dick J; Aftanas, Lyubomir; Brak, Ivan V; Filimonova, Elena A; Osipov, Evgeniy A; Reneman, Liesbeth; Schrantee, Anouk; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Hosten, Norbert; Völzke, Henry; Sim, Kang; Gotlib, Ian H; Sacchet, Matthew D; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian; Pozzi, Elena; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne; Baune, Bernhard T; Dannlowski, Udo Molecular psychiatry 32467648 2021 Sep
The effect of LRRK2 loss-of-function variants in humans. Whiffin, Nicola; Armean, Irina M; Kleinman, Aaron; Marshall, Jamie L; Minikel, Eric V; Goodrich, Julia K; Quaife, Nicholas M; Cole, Joanne B; Wang, Qingbo; Karczewski, Konrad J; Cummings, Beryl B; Francioli, Laurent; Laricchia, Kristen; Guan, Anna; Alipanahi, Babak; Morrison, Peter; Baptista, Marco A S; Merchant, Kalpana M; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Ware, James S; Havulinna, Aki S; Iliadou, Bozenna; Lee, Jung-Jin; Nadkarni, Girish N; Whiteman, Cole; 23andMe Research Team; Daly, Mark; Esko, Tõnu; Hultman, Christina; Loos, Ruth J F; Milani, Lili; Palotie, Aarno; Pato, Carlos; Pato, Michele; Saleheen, Danish; Sullivan, Patrick F; Alföldi, Jessica; Cannon, Paul; MacArthur, Daniel G Nature medicine. 32461697 2020 Jun;
Transcript expression-aware annotation improves rare variant interpretation. Cummings, Beryl B; Karczewski, Konrad J; Kosmicki, Jack A; Seaby, Eleanor G; Watts, Nicholas A; Singer-Berk, Moriel; Mudge, Jonathan M; Karjalainen, Juha; Satterstrom, F Kyle; O'Donnell-Luria, Anne H; Poterba, Timothy; Seed, Cotton; Solomonson, Matthew; Alföldi, Jessica; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Daly, Mark J; MacArthur, Daniel G Nature. 32461655 2020 May;
The mutational constraint spectrum quantified from variation in 141,456 humans. Karczewski, Konrad J; Francioli, Laurent C; Tiao, Grace; Cummings, Beryl B; Alföldi, Jessica; Wang, Qingbo; Collins, Ryan L; Laricchia, Kristen M; Ganna, Andrea; Birnbaum, Daniel P; Gauthier, Laura D; Brand, Harrison; Solomonson, Matthew; Watts, Nicholas A; Rhodes, Daniel; Singer-Berk, Moriel; England, Eleina M; Seaby, Eleanor G; Kosmicki, Jack A; Walters, Raymond K; Tashman, Katherine; Farjoun, Yossi; Banks, Eric; Poterba, Timothy; Wang, Arcturus; Seed, Cotton; Whiffin, Nicola; Chong, Jessica X; Samocha, Kaitlin E; Pierce-Hoffman, Emma; Zappala, Zachary; O'Donnell-Luria, Anne H; Minikel, Eric Vallabh; Weisburd, Ben; Lek, Monkol; Ware, James S; Vittal, Christopher; Armean, Irina M; Bergelson, Louis; Cibulskis, Kristian; Connolly, Kristen M; Covarrubias, Miguel; Donnelly, Stacey; Ferriera, Steven; Gabriel, Stacey; Gentry, Jeff; Gupta, Namrata; Jeandet, Thibault; Kaplan, Diane; Llanwarne, Christopher; Munshi, Ruchi; Novod, Sam; Petrillo, Nikelle; Roazen, David; Ruano-Rubio, Valentin; Saltzman, Andrea; Schleicher, Molly; Soto, Jose; Tibbetts, Kathleen; Tolonen, Charlotte; Wade, Gordon; Talkowski, Michael E; Genome Aggregation Database Consortium; Neale, Benjamin M; Daly, Mark J; MacArthur, Daniel G Nature. 32461654 2020 05;
Evaluating drug targets through human loss-of-function genetic variation. Minikel, Eric Vallabh; Karczewski, Konrad J; Martin, Hilary C; Cummings, Beryl B; Whiffin, Nicola; Rhodes, Daniel; Alföldi, Jessica; Trembath, Richard C; van Heel, David A; Daly, Mark J; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Schreiber, Stuart L; MacArthur, Daniel G Nature. 32461653 2020 05;
Characterising the loss-of-function impact of 5' untranslated region variants in 15,708 individuals. Whiffin, Nicola; Karczewski, Konrad J; Zhang, Xiaolei; Chothani, Sonia; Smith, Miriam J; Evans, D Gareth; Roberts, Angharad M; Quaife, Nicholas M; Schafer, Sebastian; Rackham, Owen; Alföldi, Jessica; O'Donnell-Luria, Anne H; Francioli, Laurent C; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Cook, Stuart A; Barton, Paul J R; MacArthur, Daniel G; Ware, James S Nature communications. 32461616 2020 05 27;
Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes. Wang, Qingbo; Pierce-Hoffman, Emma; Cummings, Beryl B; Alföldi, Jessica; Francioli, Laurent C; Gauthier, Laura D; Hill, Andrew J; O'Donnell-Luria, Anne H; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Karczewski, Konrad J; MacArthur, Daniel G Nature communications. 32461613 2020 05 27;
An Assessment of Environmental Health Measures in the Deepwater Horizon Research Consortia. Pan, Huaqin; Edwards, Stephen W; Ives, Cataia; Covert, Hannah; Harville, Emily W; Lichtveld, Maureen Y; Wickliffe, Jeffrey K; Hamilton, Carol M Current opinion in toxicology. 32457927 2019 Aug;
Pangenome Graphs. Eizenga, Jordan M; Novak, Adam M; Sibbesen, Jonas A; Heumos, Simon; Ghaffaari, Ali; Hickey, Glenn; Chang, Xian; Seaman, Josiah D; Rounthwaite, Robin; Ebler, Jana; Rautiainen, Mikko; Garg, Shilpa; Paten, Benedict; Marschall, Tobias; Sirén, Jouni; Garrison, Erik Annual review of genomics and human genetics 32453966 2020 08 31
Linked patterns of biological and environmental covariation with brain structure in adolescence: a population-based longitudinal study. Modabbernia, Amirhossein; Reichenberg, Abraham; Ing, Alex; Moser, Dominik A; Doucet, Gaelle E; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth J; Becker, Andreas; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Garavan, Hugh; Gowland, Penny; Grigis, Antoine; Grimmer, Yvonne; Heinz, Andreas; Insensee, Corinna; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Millenet, Sabina; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Penttilä, Jani; Poustka, Luise; Smolka, Michael N; Stringaris, Argyris; van Noort, Betteke M; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Frangou, Sophia; IMAGEN Consortium Molecular psychiatry 32444868 2020 May 22
Cognitive and brain development is independently influenced by socioeconomic status and polygenic scores for educational attainment. Judd, Nicholas; Sauce, Bruno; Wiedenhoeft, John; Tromp, Jeshua; Chaarani, Bader; Schliep, Alexander; van Noort, Betteke; Penttilä, Jani; Grimmer, Yvonne; Insensee, Corinna; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Klingberg, Torkel Proceedings of the National Academy of Sciences of the United States of America. 32430323 2020 06 02;
Machine learning on drug-specific data to predict small molecule teratogenicity. Challa, Anup P; Beam, Andrew L; Shen, Min; Peryea, Tyler; Lavieri, Robert R; Lippmann, Ethan S; Aronoff, David M Reproductive toxicology (Elmsford, N.Y.). 32428651 2020 Aug;
Brain aging in major depressive disorder: results from the ENIGMA major depressive disorder working group. Han, Laura K M; Dinga, Richard; Hahn, Tim; Ching, Christopher R K; Eyler, Lisa T; Aftanas, Lyubomir; Aghajani, Moji; Aleman, André; Baune, Bernhard T; Berger, Klaus; Brak, Ivan; Filho, Geraldo Busatto; Carballedo, Angela; Connolly, Colm G; Couvy-Duchesne, Baptiste; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Duran, Fabio L S; Enneking, Verena; Filimonova, Elena; Frenzel, Stefan; Frodl, Thomas; Fu, Cynthia H Y; Godlewska, Beata R; Gotlib, Ian H; Grabe, Hans J; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Hall, Geoffrey B; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Ho, Tiffany C; Hosten, Norbert; Jansen, Andreas; Kähler, Claas; Kircher, Tilo; Klimes-Dougan, Bonnie; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leenings, Ramona; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew; McLellan, Quinn; McMahon, Katie L; Medland, Sarah E; Mueller, Bryon A; Mwangi, Benson; Osipov, Evgeny; Portella, Maria J; Pozzi, Elena; Reneman, Liesbeth; Repple, Jonathan; Rosa, Pedro G P; Sacchet, Matthew D; Sämann, Philipp G; Schnell, Knut; Schrantee, Anouk; Simulionyte, Egle; Soares, Jair C; Sommer, Jens; Stein, Dan J; Steinsträter, Olaf; Strike, Lachlan T; Thomopoulos, Sophia I; van Tol, Marie-José; Veer, Ilya M; Vermeiren, Robert R J M; Walter, Henrik; van der Wee, Nic J A; van der Werff, Steven J A; Whalley, Heather; Winter, Nils R; Wittfeld, Katharina; Wright, Margaret J; Wu, Mon-Ju; Völzke, Henry; Yang, Tony T; Zannias, Vasileios; de Zubicaray, Greig I; Zunta-Soares, Giovana B; Abé, Christoph; Alda, Martin; Andreassen, Ole A; Bøen, Erlend; Bonnin, Caterina M; Canales-Rodriguez, Erick J; Cannon, Dara; Caseras, Xavier; Chaim-Avancini, Tiffany M; Elvsåshagen, Torbjørn; Favre, Pauline; Foley, Sonya F; Fullerton, Janice M; Goikolea, Jose M; Haarman, Bartholomeus C M; Hajek, Tomas; Henry, Chantal; Houenou, Josselin; Howells, Fleur M; Ingvar, Martin; Kuplicki, Rayus; Lafer, Beny; Landén, Mikael; Machado-Vieira, Rodrigo; Malt, Ulrik F; McDonald, Colm; Mitchell, Philip B; Nabulsi, Leila; Otaduy, Maria Concepcion Garcia; Overs, Bronwyn J; Polosan, Mircea; Pomarol-Clotet, Edith; Radua, Joaquim; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Savitz, Jonathan; Schene, Aart H; Schofield, Peter R; Serpa, Mauricio H; Sim, Kang; Soeiro-de-Souza, Marcio Gerhardt; Sutherland, Ashley N; Temmingh, Henk S; Timmons, Garrett M; Uhlmann, Anne; Vieta, Eduard; Wolf, Daniel H; Zanetti, Marcus V; Jahanshad, Neda; Thompson, Paul M; Veltman, Dick J; Penninx, Brenda W J H; Marquand, Andre F; Cole, James H; Schmaal, Lianne Molecular psychiatry 32424236 2021 Sep
Consortium neuroscience of attention deficit/hyperactivity disorder and autism spectrum disorder: The ENIGMA adventure. Hoogman, Martine; van Rooij, Daan; Klein, Marieke; Boedhoe, Premika; Ilioska, Iva; Li, Ting; Patel, Yash; Postema, Merel C; Zhang-James, Yanli; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Banaschewski, Tobias; Bau, Claiton H D; Behrmann, Marlene; Bellgrove, Mark A; Brandeis, Daniel; Brem, Silvia; Busatto, Geraldo F; Calderoni, Sara; Calvo, Rosa; Castellanos, Francisco X; Coghill, David; Conzelmann, Annette; Daly, Eileen; Deruelle, Christine; Dinstein, Ilan; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Epstein, Jeffery N; Fair, Damien A; Fitzgerald, Jacqueline; Freitag, Christine M; Frodl, Thomas; Gallagher, Louise; Grevet, Eugenio H; Haavik, Jan; Hoekstra, Pieter J; Janssen, Joost; Karkashadze, Georgii; King, Joseph A; Konrad, Kerstin; Kuntsi, Jonna; Lazaro, Luisa; Lerch, Jason P; Lesch, Klaus-Peter; Louza, Mario R; Luna, Beatriz; Mattos, Paulo; McGrath, Jane; Muratori, Filippo; Murphy, Clodagh; Nigg, Joel T; Oberwelland-Weiss, Eileen; O'Gorman Tuura, Ruth L; O'Hearn, Kirsten; Oosterlaan, Jaap; Parellada, Mara; Pauli, Paul; Plessen, Kerstin J; Ramos-Quiroga, J Antoni; Reif, Andreas; Reneman, Liesbeth; Retico, Alessandra; Rosa, Pedro G P; Rubia, Katya; Shaw, Philip; Silk, Tim J; Tamm, Leanne; Vilarroya, Oscar; Walitza, Susanne; Jahanshad, Neda; Faraone, Stephen V; Francks, Clyde; van den Heuvel, Odile A; Paus, Tomas; Thompson, Paul M; Buitelaar, Jan K; Franke, Barbara Human brain mapping. 32420680 2020 May 18;
Mapping brain asymmetry in health and disease through the ENIGMA consortium. Kong, Xiang-Zhen; Postema, Merel C; Guadalupe, Tulio; de Kovel, Carolien; Boedhoe, Premika S W; Hoogman, Martine; Mathias, Samuel R; van Rooij, Daan; Schijven, Dick; Glahn, David C; Medland, Sarah E; Jahanshad, Neda; Thomopoulos, Sophia I; Turner, Jessica A; Buitelaar, Jan; van Erp, Theo G M; Franke, Barbara; Fisher, Simon E; van den Heuvel, Odile A; Schmaal, Lianne; Thompson, Paul M; Francks, Clyde Human brain mapping 32420672 2022 Jan
A Natural Language Interface for Dissemination of Reproducible Biomedical Data Science. John, Rogers Jeffrey Leo; Patel, Jignesh M; Alexander, Andrew L; Singh, Vikas; Adluru, Nagesh Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 32412016 2018 Sep;
Conditional Recurrent Flow: Conditional Generation of Longitudinal Samples with Applications to Neuroimaging. Hwang, Seong Jae; Tao, Zirui; Kim, Won Hwa; Singh, Vikas Proceedings. IEEE International Conference on Computer Vision. 32405276 2019 Oct-Nov;
Dilated Convolutional Neural Networks for Sequential Manifold-valued Data. Zhen, Xingjian; Chakraborty, Rudrasis; Vogt, Nicholas; Bendlin, Barbara B; Singh, Vikas Proceedings. IEEE International Conference on Computer Vision. 32405275 2019 Oct-Nov;
Sampling-free Uncertainty Estimation in Gated Recurrent Units with Applications to Normative Modeling in Neuroimaging. Hwang, Seong Jae; Mehta, Ronak R; Kim, Hyunwoo J; Johnson, Sterling C; Singh, Vikas Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. 32405271 2019 Jul;
Machine Learning Offers Exciting Potential for Predicting Postprocedural Outcomes: A Framework for Developing Random Forest Models in IR. Sinha, Ishan; Aluthge, Dilum P; Chen, Elizabeth S; Sarkar, Indra Neil; Ahn, Sun Ho Journal of vascular and interventional radiology : JVIR 32376173 2020 06
Goal-setting And Achievement In Activity Tracking Apps: A Case Study Of MyFitnessPal. Gordon, Mitchell L; Althoff, Tim; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 32368761 2019 May;
EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning. Kuo, Tsung-Ting; Gabriel, Rodney A; Cidambi, Krishna R; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA. 32364235 2020 May 01;
Engaging citizen scientists to build healthy park environments in Colombia. Rubio, María Alejandra; Triana, Camilo; King, Abby C; Rosas, Lisa G; Banchoff, Ann W; Rubiano, Oscar; Chrisinger, Benjamin W; Sarmiento, Olga L Health promotion international 32361761 2021 Mar 12
QSAR without borders. Muratov, Eugene N; Bajorath, Jürgen; Sheridan, Robert P; Tetko, Igor V; Filimonov, Dmitry; Poroikov, Vladimir; Oprea, Tudor I; Baskin, Igor I; Varnek, Alexandre; Roitberg, Adrian; Isayev, Olexandr; Curtarolo, Stefano; Fourches, Denis; Cohen, Yoram; Aspuru-Guzik, Alan; Winkler, David A; Agrafiotis, Dimitris; Cherkasov, Artem; Tropsha, Alexander Chemical Society reviews 32356548 2020 06 07
Riemannian Variance Filtering: An Independent Filtering Scheme for Statistical Tests on Manifold-valued Data. Zheng, Ligang; Kim, Hyunwoo J; Adluru, Nagesh; Newton, Michael A; Singh, Vikas Conference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops. 32355573 2017 Jul;
The turning and barrier course reveals gait parameters for detecting freezing of gait and measuring the efficacy of deep brain stimulation. O'Day, Johanna; Syrkin-Nikolau, Judy; Anidi, Chioma; Kidzinski, Lukasz; Delp, Scott; Bronte-Stewart, Helen PloS one. 32348346 2020;
From a deep learning model back to the brain-Identifying regional predictors and their relation to aging. Levakov, Gidon; Rosenthal, Gideon; Shelef, Ilan; Raviv, Tammy Riklin; Avidan, Galia Human brain mapping. 32320123 2020 Aug 15;
Efficient Relative Attribute Learning using Graph Neural Networks. Meng, Zihang; Adluru, Nagesh; Kim, Hyunwoo J; Fung, Glenn; Singh, Vikas Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. 32318687 2018 Sep;
Neurobehavioural characterisation and stratification of reinforcement-related behaviour. Jia, Tianye; Ing, Alex; Quinlan, Erin Burke; Tay, Nicole; Luo, Qiang; Francesca, Biondo; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Feng, Jianfeng; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium Nature human behaviour. 32313235 2020 05;
The ENIGMA Stroke Recovery Working Group: Big data neuroimaging to study brain-behavior relationships after stroke. Liew, Sook-Lei; Zavaliangos-Petropulu, Artemis; Jahanshad, Neda; Lang, Catherine E; Hayward, Kathryn S; Lohse, Keith R; Juliano, Julia M; Assogna, Francesca; Baugh, Lee A; Bhattacharya, Anup K; Bigjahan, Bavrina; Borich, Michael R; Boyd, Lara A; Brodtmann, Amy; Buetefisch, Cathrin M; Byblow, Winston D; Cassidy, Jessica M; Conforto, Adriana B; Craddock, R Cameron; Dimyan, Michael A; Dula, Adrienne N; Ermer, Elsa; Etherton, Mark R; Fercho, Kelene A; Gregory, Chris M; Hadidchi, Shahram; Holguin, Jess A; Hwang, Darryl H; Jung, Simon; Kautz, Steven A; Khlif, Mohamed Salah; Khoshab, Nima; Kim, Bokkyu; Kim, Hosung; Kuceyeski, Amy; Lotze, Martin; MacIntosh, Bradley J; Margetis, John L; Mohamed, Feroze B; Piras, Fabrizio; Ramos-Murguialday, Ander; Richard, Geneviève; Roberts, Pamela; Robertson, Andrew D; Rondina, Jane M; Rost, Natalia S; Sanossian, Nerses; Schweighofer, Nicolas; Seo, Na Jin; Shiroishi, Mark S; Soekadar, Surjo R; Spalletta, Gianfranco; Stinear, Cathy M; Suri, Anisha; Tang, Wai Kwong W; Thielman, Gregory T; Vecchio, Daniela; Villringer, Arno; Ward, Nick S; Werden, Emilio; Westlye, Lars T; Winstein, Carolee; Wittenberg, George F; Wong, Kristin A; Yu, Chunshui; Cramer, Steven C; Thompson, Paul M Human brain mapping 32310331 2022 Jan
Comparison of Smart Contract Blockchains for Healthcare Applications. Yu, Hongru; Sun, Haiyang; Wu, Danyi; Kuo, Tsung-Ting AMIA ... Annual Symposium proceedings. AMIA Symposium 32308924 2019
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. Adekkanattu, Prakash; Jiang, Guoqian; Luo, Yuan; Kingsbury, Paul R; Xu, Zhenxing; Rasmussen, Luke V; Pacheco, Jennifer A; Kiefer, Richard C; Stone, Daniel J; Brandt, Pascal S; Yao, Liang; Zhong, Yizhen; Deng, Yu; Wang, Fei; Ancker, Jessica S; Campion, Thomas R; Pathak, Jyotishman AMIA ... Annual Symposium proceedings. AMIA Symposium. 32308812 2019;
ENIGMA-DTI: Translating reproducible white matter deficits into personalized vulnerability metrics in cross-diagnostic psychiatric research. Kochunov, Peter; Hong, L Elliot; Dennis, Emily L; Morey, Rajendra A; Tate, David F; Wilde, Elisabeth A; Logue, Mark; Kelly, Sinead; Donohoe, Gary; Favre, Pauline; Houenou, Josselin; Ching, Christopher R K; Holleran, Laurena; Andreassen, Ole A; van Velzen, Laura S; Schmaal, Lianne; Villalón-Reina, Julio E; Bearden, Carrie E; Piras, Fabrizio; Spalletta, Gianfranco; van den Heuvel, Odile A; Veltman, Dick J; Stein, Dan J; Ryan, Meghann C; Tan, Yunlong; van Erp, Theo G M; Turner, Jessica A; Haddad, Liz; Nir, Talia M; Glahn, David C; Thompson, Paul M; Jahanshad, Neda Human brain mapping 32301246 2022 Jan
A structured model for immune exposures. Vita, Randi; Overton, James A; Dunn, Patrick; Cheung, Kei-Hoi; Kleinstein, Steven H; Sette, Alessandro; Peters, Bjoern Database : the journal of biological databases and curation 32283555 2020 01 01
Automated Classification of Radiographic Knee Osteoarthritis Severity Using Deep Neural Networks. Thomas, Kevin A; Kidziński, Łukasz; Halilaj, Eni; Fleming, Scott L; Venkataraman, Guhan R; Oei, Edwin H G; Gold, Garry E; Delp, Scott L Radiology. Artificial intelligence 32280948 2020 Mar 18
Region-specific sex differences in the hippocampus. van Eijk, Liza; Hansell, Narelle K; Strike, Lachlan T; Couvy-Duchesne, Baptiste; de Zubicaray, Greig I; Thompson, Paul M; McMahon, Katie L; Zietsch, Brendan P; Wright, Margaret J NeuroImage. 32278894 2020 07 15;
Parity is associated with cognitive function and brain age in both females and males. Ning, Kaida; Zhao, Lu; Franklin, Meredith; Matloff, Will; Batta, Ishaan; Arzouni, Nibal; Sun, Fengzhu; Toga, Arthur W Scientific reports 32269255 2020 04 08
EIF3H Orchestrates Hippo Pathway-Mediated Oncogenesis via Catalytic Control of YAP Stability. Zhou, Zhuan; Zhou, Honghong; Ponzoni, Luca; Luo, Aiping; Zhu, Rui; He, Mingjing; Huang, Yi; Guan, Kun-Liang; Bahar, Ivet; Liu, Zhihua; Wan, Yong Cancer research. 32269044 2020 Jun 15;
G2SAT: Learning to Generate SAT Formulas. You, Jiaxuan; Wu, Haoze; Barrett, Clark; Ramanujan, Raghuram; Leskovec, Jure Advances in neural information processing systems. 32265581 2019 Dec;
GNNExplainer: Generating Explanations for Graph Neural Networks. Ying, Rex; Bourgeois, Dylan; You, Jiaxuan; Zitnik, Marinka; Leskovec, Jure Advances in neural information processing systems. 32265580 2019 Dec;
Optimizing Connectivity-Driven Brain Parcellation Using Ensemble Clustering. Kurmukov, Anvar; Mussabaeva, Ayagoz; Denisova, Yulia; Moyer, Daniel; Jahanshad, Neda; Thompson, Paul M; Gutman, Boris A Brain connectivity. 32264696 2020 05;
Hyperbolic Graph Convolutional Neural Networks. Chami, Ines; Ying, Rex; Ré, Christopher; Leskovec, Jure Advances in neural information processing systems. 32256024 2019 Dec;
Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study. Tu, Yanshuai; Mi, Liang; Zhang, Wen; Zhang, Haomeng; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Gu, Xianfeng; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative Neuroinformatics. 32253701 2020 Apr 06;
Scanner invariant representations for diffusion MRI harmonization. Moyer, Daniel; Ver Steeg, Greg; Tax, Chantal M W; Thompson, Paul M Magnetic resonance in medicine. 32250475 2020 Apr 06;
GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets. Gutiérrez-Sacristán, Alba; De Niz, Carlos; Kothari, Cartik; Kong, Sek Won; Mandl, Kenneth D; Avillach, Paul Briefings in bioinformatics 32249310 2021 01 18
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer. Wagner, Alex H; Walsh, Brian; Mayfield, Georgia; Tamborero, David; Sonkin, Dmitriy; Krysiak, Kilannin; Deu-Pons, Jordi; Duren, Ryan P; Gao, Jianjiong; McMurry, Julie; Patterson, Sara; Del Vecchio Fitz, Catherine; Pitel, Beth A; Sezerman, Ozman U; Ellrott, Kyle; Warner, Jeremy L; Rieke, Damian T; Aittokallio, Tero; Cerami, Ethan; Ritter, Deborah I; Schriml, Lynn M; Freimuth, Robert R; Haendel, Melissa; Raca, Gordana; Madhavan, Subha; Baudis, Michael; Beckmann, Jacques S; Dienstmann, Rodrigo; Chakravarty, Debyani; Li, Xuan Shirley; Mockus, Susan; Elemento, Olivier; Schultz, Nikolaus; Lopez-Bigas, Nuria; Lawler, Mark; Goecks, Jeremy; Griffith, Malachi; Griffith, Obi L; Margolin, Adam A; Variant Interpretation for Cancer Consortium Nature genetics. 32246132 2020 04;
Foot strike pattern during running alters muscle-tendon dynamics of the gastrocnemius and the soleus. Yong, Jennifer R; Dembia, Christopher L; Silder, Amy; Jackson, Rachel W; Fredericson, Michael; Delp, Scott L Scientific reports. 32245985 2020 Apr 03;
Use of social media to assess the impact of equitable state policies on LGBTQ patient experiences: An exploratory study. Hswen, Yulin; Zhang, Amanda; Sewalk, Kara; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared B Healthcare (Amsterdam, Netherlands). 32241681 2020 Jun;
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. Gonçalves, Rafael S; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference. 32219223 2017 Oct;
Scene Graph Prediction with Limited Labels. Chen, Vincent S; Varma, Paroma; Krishna, Ranjay; Bernstein, Michael; Ré, Christopher; Fei-Fei, Li Proceedings. IEEE International Conference on Computer Vision. 32218709 2019 Oct-Nov;
The Relationship Between White Matter Microstructure and General Cognitive Ability in Patients With Schizophrenia and Healthy Participants in the ENIGMA Consortium. Holleran, Laurena; Kelly, Sinead; Alloza, Clara; Agartz, Ingrid; Andreassen, Ole A; Arango, Celso; Banaj, Nerisa; Calhoun, Vince; Cannon, Dara; Carr, Vaughan; Corvin, Aiden; Glahn, David C; Gur, Ruben; Hong, Elliot; Hoschl, Cyril; Howells, Fleur M; James, Anthony; Janssen, Joost; Kochunov, Peter; Lawrie, Stephen M; Liu, Jingyu; Martinez, Covadonga; McDonald, Colm; Morris, Derek; Mothersill, David; Pantelis, Christos; Piras, Fabrizio; Potkin, Steven; Rasser, Paul E; Roalf, David; Rowland, Laura; Satterthwaite, Theodore; Schall, Ulrich; Spalletta, Gianfranco; Spaniel, Filip; Stein, Dan J; Uhlmann, Anne; Voineskos, Aristotle; Zalesky, Andrew; van Erp, Theo G M; Turner, Jessica A; Deary, Ian J; Thompson, Paul M; Jahanshad, Neda; Donohoe, Gary The American journal of psychiatry 32212855 2020 06 01
Subcortical shape alterations in major depressive disorder: Findings from the ENIGMA major depressive disorder working group. Ho, Tiffany C; Gutman, Boris; Pozzi, Elena; Grabe, Hans J; Hosten, Norbert; Wittfeld, Katharina; Völzke, Henry; Baune, Bernhard; Dannlowski, Udo; Förster, Katharina; Grotegerd, Dominik; Redlich, Ronny; Jansen, Andreas; Kircher, Tilo; Krug, Axel; Meinert, Susanne; Nenadic, Igor; Opel, Nils; Dinga, Richard; Veltman, Dick J; Schnell, Knut; Veer, Ilya; Walter, Henrik; Gotlib, Ian H; Sacchet, Matthew D; Aleman, André; Groenewold, Nynke A; Stein, Dan J; Li, Meng; Walter, Martin; Ching, Christopher R K; Jahanshad, Neda; Ragothaman, Anjanibhargavi; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Thompson, Paul M; Sämann, Philipp G; Schmaal, Lianne Human brain mapping. 32198905 2020 Mar 21;
ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries. Thompson, Paul M; Jahanshad, Neda; Ching, Christopher R K; Salminen, Lauren E; Thomopoulos, Sophia I; Bright, Joanna; Baune, Bernhard T; Bertolín, Sara; Bralten, Janita; Bruin, Willem B; Bülow, Robin; Chen, Jian; Chye, Yann; Dannlowski, Udo; de Kovel, Carolien G F; Donohoe, Gary; Eyler, Lisa T; Faraone, Stephen V; Favre, Pauline; Filippi, Courtney A; Frodl, Thomas; Garijo, Daniel; Gil, Yolanda; Grabe, Hans J; Grasby, Katrina L; Hajek, Tomas; Han, Laura K M; Hatton, Sean N; Hilbert, Kevin; Ho, Tiffany C; Holleran, Laurena; Homuth, Georg; Hosten, Norbert; Houenou, Josselin; Ivanov, Iliyan; Jia, Tianye; Kelly, Sinead; Klein, Marieke; Kwon, Jun Soo; Laansma, Max A; Leerssen, Jeanne; Lueken, Ulrike; Nunes, Abraham; Neill, Joseph O'; Opel, Nils; Piras, Fabrizio; Piras, Federica; Postema, Merel C; Pozzi, Elena; Shatokhina, Natalia; Soriano-Mas, Carles; Spalletta, Gianfranco; Sun, Daqiang; Teumer, Alexander; Tilot, Amanda K; Tozzi, Leonardo; van der Merwe, Celia; Van Someren, Eus J W; van Wingen, Guido A; Völzke, Henry; Walton, Esther; Wang, Lei; Winkler, Anderson M; Wittfeld, Katharina; Wright, Margaret J; Yun, Je-Yeon; Zhang, Guohao; Zhang-James, Yanli; Adhikari, Bhim M; Agartz, Ingrid; Aghajani, Moji; Aleman, André; Althoff, Robert R; Altmann, Andre; Andreassen, Ole A; Baron, David A; Bartnik-Olson, Brenda L; Marie Bas-Hoogendam, Janna; Baskin-Sommers, Arielle R; Bearden, Carrie E; Berner, Laura A; Boedhoe, Premika S W; Brouwer, Rachel M; Buitelaar, Jan K; Caeyenberghs, Karen; Cecil, Charlotte A M; Cohen, Ronald A; Cole, James H; Conrod, Patricia J; De Brito, Stephane A; de Zwarte, Sonja M C; Dennis, Emily L; Desrivieres, Sylvane; Dima, Danai; Ehrlich, Stefan; Esopenko, Carrie; Fairchild, Graeme; Fisher, Simon E; Fouche, Jean-Paul; Francks, Clyde; Frangou, Sophia; Franke, Barbara; Garavan, Hugh P; Glahn, David C; Groenewold, Nynke A; Gurholt, Tiril P; Gutman, Boris A; Hahn, Tim; Harding, Ian H; Hernaus, Dennis; Hibar, Derrek P; Hillary, Frank G; Hoogman, Martine; Hulshoff Pol, Hilleke E; Jalbrzikowski, Maria; Karkashadze, George A; Klapwijk, Eduard T; Knickmeyer, Rebecca C; Kochunov, Peter; Koerte, Inga K; Kong, Xiang-Zhen; Liew, Sook-Lei; Lin, Alexander P; Logue, Mark W; Luders, Eileen; Macciardi, Fabio; Mackey, Scott; Mayer, Andrew R; McDonald, Carrie R; McMahon, Agnes B; Medland, Sarah E; Modinos, Gemma; Morey, Rajendra A; Mueller, Sven C; Mukherjee, Pratik; Namazova-Baranova, Leyla; Nir, Talia M; Olsen, Alexander; Paschou, Peristera; Pine, Daniel S; Pizzagalli, Fabrizio; Rentería, Miguel E; Rohrer, Jonathan D; Sämann, Philipp G; Schmaal, Lianne; Schumann, Gunter; Shiroishi, Mark S; Sisodiya, Sanjay M; Smit, Dirk J A; Sønderby, Ida E; Stein, Dan J; Stein, Jason L; Tahmasian, Masoud; Tate, David F; Turner, Jessica A; van den Heuvel, Odile A; van der Wee, Nic J A; van der Werf, Ysbrand D; van Erp, Theo G M; van Haren, Neeltje E M; van Rooij, Daan; van Velzen, Laura S; Veer, Ilya M; Veltman, Dick J; Villalon-Reina, Julio E; Walter, Henrik; Whelan, Christopher D; Wilde, Elisabeth A; Zarei, Mojtaba; Zelman, Vladimir; ENIGMA Consortium Translational psychiatry. 32198361 2020 Mar 20;
The genetic architecture of the human cerebral cortex. Grasby, Katrina L (see original citation for additional authors) Science (New York, N.Y.). 32193296 2020 03 20;
Wikidata as a knowledge graph for the life sciences. Waagmeester, Andra; Stupp, Gregory; Burgstaller-Muehlbacher, Sebastian; Good, Benjamin M; Griffith, Malachi; Griffith, Obi L; Hanspers, Kristina; Hermjakob, Henning; Hudson, Toby S; Hybiske, Kevin; Keating, Sarah M; Manske, Magnus; Mayers, Michael; Mietchen, Daniel; Mitraka, Elvira; Pico, Alexander R; Putman, Timothy; Riutta, Anders; Queralt-Rosinach, Nuria; Schriml, Lynn M; Shafee, Thomas; Slenter, Denise; Stephan, Ralf; Thornton, Katherine; Tsueng, Ginger; Tu, Roger; Ul-Hasan, Sabah; Willighagen, Egon; Wu, Chunlei; Su, Andrew I eLife. 32180547 2020 Mar 17;
FKBP5 haplotypes and PTSD modulate the resting-state brain activity in Han Chinese adults who lost their only child. Qi, Rongfeng; Luo, Yifeng; Zhang, Li; Weng, Yifei; Surento, Wesley; Jahanshad, Neda; Xu, Qiang; Yin, Yan; Li, Lingjiang; Cao, Zhihong; Thompson, Paul M; Lu, Guang Ming Translational psychiatry. 32170058 2020 Mar 13;
Mutation effect estimation on protein-protein interactions using deep contextualized representation learning. Zhou, Guangyu; Chen, Muhao; Ju, Chelsea J T; Wang, Zheng; Jiang, Jyun-Yu; Wang, Wei NAR genomics and bioinformatics 32166223 2020 Jun
Publisher Correction: Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma. Chen, Bin; Garmire, Lana; Calvisi, Diego F; Chua, Mei-Sze; Kelley, Robin K; Chen, Xin Nature reviews. Gastroenterology & hepatology 32161375 2020 Mar 11
Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization. Bravo, Rafael R; Baratchart, Etienne; West, Jeffrey; Schenck, Ryan O; Miller, Anna K; Gallaher, Jill; Gatenbee, Chandler D; Basanta, David; Robertson-Tessi, Mark; Anderson, Alexander R A PLoS computational biology. 32155140 2020 03;
An overview of the first 5?years of the ENIGMA obsessive-compulsive disorder working group: The power of worldwide collaboration. van den Heuvel, Odile A; Boedhoe, Premika S W; Bertolin, Sara; Bruin, Willem B; Francks, Clyde; Ivanov, Iliyan; Jahanshad, Neda; Kong, Xiang-Zhen; Kwon, Jun Soo; O'Neill, Joseph; Paus, Tomas; Patel, Yash; Piras, Fabrizio; Schmaal, Lianne; Soriano-Mas, Carles; Spalletta, Gianfranco; van Wingen, Guido A; Yun, Je-Yeon; Vriend, Chris; Simpson, H Blair; van Rooij, Daan; Hoexter, Marcelo Q; Hoogman, Martine; Buitelaar, Jan K; Arnold, Paul; Beucke, Jan C; Benedetti, Francesco; Bollettini, Irene; Bose, Anushree; Brennan, Brian P; De Nadai, Alessandro S; Fitzgerald, Kate; Gruner, Patricia; Grünblatt, Edna; Hirano, Yoshiyuki; Huyser, Chaim; James, Anthony; Koch, Kathrin; Kvale, Gerd; Lazaro, Luisa; Lochner, Christine; Marsh, Rachel; Mataix-Cols, David; Morgado, Pedro; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika; Pittenger, Christopher; Reddy, Y C Janardhan; Sato, João R; Soreni, Noam; Stewart, S Evelyn; Taylor, Stephan F; Tolin, David; Thomopoulos, Sophia I; Veltman, Dick J; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; Thompson, Paul M; Stein, Dan J; ENIGMA-OCD working group Human brain mapping. 32154629 2020 Mar 10;
Resting-state ''physiological networks''. Chen, Jingyuan E; Lewis, Laura D; Chang, Catie; Tian, Qiyuan; Fultz, Nina E; Ohringer, Ned A; Rosen, Bruce R; Polimeni, Jonathan R NeuroImage. 32145437 2020 Jun;
Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records. Zong, Nansu; Wen, Andrew; Stone, Daniel J; Sharma, Deepak K; Wang, Chen; Yu, Yue; Liu, Hongfang; Shi, Qian; Jiang, Guoqian JCO clinical cancer informatics. 32134686 2020 03;
Educational attainment polygenic scores are associated with cortical total surface area and regions important for language and memory. Mitchell, Brittany L; Cuéllar-Partida, Gabriel; Grasby, Katrina L; Campos, Adrian I; Strike, Lachlan T; Hwang, Liang-Dar; Okbay, Aysu; Thompson, Paul M; Medland, Sarah E; Martin, Nicholas G; Wright, Margaret J; Rentería, Miguel E NeuroImage. 32126298 2020 05 15;
Modernizing the Methods and Analytics Curricula for Health Science Doctoral Programs. Dinov, Ivo D Frontiers in public health. 32117857 2020;
Semantic concept schema of the linear mixed model of experimental observations. ?wiek-Kupczy?ska, Hanna; Filipiak, Katarzyna; Markiewicz, Augustyn; Rocca-Serra, Philippe; Gonzalez-Beltran, Alejandra N; Sansone, Susanna-Assunta; Millet, Emilie J; van Eeuwijk, Fred; ?awrynowicz, Agnieszka; Krajewski, Pawe? Scientific data. 32109232 2020 02 27;
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format. Eng, Jimmy K; Deutsch, Eric W Proteomics. 32106352 2020 Feb 27;
BrainAGE and regional volumetric analysis of a Buddhist monk: a longitudinal MRI case study. Adluru, Nagesh; Korponay, Cole H; Norton, Derek L; Goldman, Robin I; Davidson, Richard J Neurocase. 32100616 2020 04;
Anastrozole has an Association between Degree of Estrogen Suppression and Outcomes in Early Breast Cancer and is a Ligand for Estrogen Receptor ?. Ingle, James N; Cairns, Junmei; Suman, Vera J; Shepherd, Lois E; Fasching, Peter A; Hoskin, Tanya L; Singh, Ravinder J; Desta, Zeruesenay; Kalari, Krishna R; Ellis, Matthew J; Goss, Paul E; Chen, Bingshu E; Volz, Bernhard; Barman, Poulami; Carlson, Erin E; Haddad, Tufia; Goetz, Matthew P; Goodnature, Barbara; Cuellar, Matthew E; Walters, Michael A; Correia, Cristina; Kaufmann, Scott H; Weinshilboum, Richard M; Wang, Liewei Clinical cancer research : an official journal of the American Association for Cancer Research. 32098767 2020 Jun 15;
Bayesian Framework for Detecting Gene Expression Outliers in Individual Samples. Vivian, John; Eizenga, Jordan M; Beale, Holly C; Vaske, Olena M; Paten, Benedict JCO clinical cancer informatics. 32097024 2020 Feb;
Contribution of common and rare variants to bipolar disorder susceptibility in extended pedigrees from population isolates. Sul, Jae Hoon; Service, Susan K; Huang, Alden Y; Ramensky, Vasily; Hwang, Sun-Goo; Teshiba, Terri M; Park, YoungJun; Ori, Anil P S; Zhang, Zhongyang; Mullins, Niamh; Olde Loohuis, Loes M; Fears, Scott C; Araya, Carmen; Araya, Xinia; Spesny, Mitzi; Bejarano, Julio; Ramirez, Margarita; Castrillón, Gabriel; Gomez-Makhinson, Juliana; Lopez, Maria C; Montoya, Gabriel; Montoya, Claudia P; Aldana, Ileana; Escobar, Javier I; Ospina-Duque, Jorge; Kremeyer, Barbara; Bedoya, Gabriel; Ruiz-Linares, Andres; Cantor, Rita M; Molina, Julio; Coppola, Giovanni; Ophoff, Roel A; Macaya, Gabriel; Lopez-Jaramillo, Carlos; Reus, Victor; Bearden, Carrie E; Sabatti, Chiara; Freimer, Nelson B Translational psychiatry. 32094344 2020 Feb 24;
Magnitude and timing of major white matter tract maturation from infancy through adolescence with NODDI. Lynch, Kirsten M; Cabeen, Ryan P; Toga, Arthur W; Clark, Kristi A NeuroImage. 32092432 2020 May 15;
sMRT: Multi-Resident Tracking in Smart Homes with Sensor Vectorization. Wang, Tinghui; Cook, Diane J IEEE transactions on pattern analysis and machine intelligence. 32070942 2020 Feb 13;
Deep Learning-driven research for drug discovery: Tackling Malaria. Neves, Bruno J; Braga, Rodolpho C; Alves, Vinicius M; Lima, Marília N N; Cassiano, Gustavo C; Muratov, Eugene N; Costa, Fabio T M; Andrade, Carolina Horta PLoS computational biology. 32069285 2020 02;
Developing a Suite of Online Learning Modules on the Components of Next-Generation Sequencing Projects. Wright, Robert A Medical reference services quarterly. 32069203 2020 Jan-Mar;
Small airways pathology in idiopathic pulmonary fibrosis: a retrospective cohort study. Verleden, Stijn E; Tanabe, Naoya; McDonough, John E; Vasilescu, Drago? M; Xu, Feng; Wuyts, Wim A; Piloni, Davide; De Sadeleer, Laurens; Willems, Stijn; Mai, Cindy; Hostens, Jeroen; Cooper, Joel D; Verbeken, Erik K; Verschakelen, Johny; Galban, Craig J; Van Raemdonck, Dirk E; Colby, Thomas V; Decramer, Marc; Verleden, Geert M; Kaminski, Naftali; Hackett, Tillie-Louise; Vanaudenaerde, Bart M; Hogg, James C The Lancet. Respiratory medicine. 32061334 2020 Jun;
Genotyping structural variants in pangenome graphs using the vg toolkit. Hickey, Glenn; Heller, David; Monlong, Jean; Sibbesen, Jonas A; Sirén, Jouni; Eizenga, Jordan; Dawson, Eric T; Garrison, Erik; Novak, Adam M; Paten, Benedict Genome biology. 32051000 2020 Feb 12;
Mapping Subcortical Brain Alterations in 22q11.2 Deletion Syndrome: Effects of Deletion Size and Convergence With Idiopathic Neuropsychiatric Illness. Ching, Christopher R K; Gutman, Boris A; Sun, Daqiang; Villalon Reina, Julio; Ragothaman, Anjanibhargavi; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Lin, Amy; Jonas, Rachel K; Kushan, Leila; Pacheco-Hansen, Laura; Vajdi, Ariana; Forsyth, Jennifer K; Jalbrzikowski, Maria; Bakker, Geor; van Amelsvoort, Therese; Antshel, Kevin M; Fremont, Wanda; Kates, Wendy R; Campbell, Linda E; McCabe, Kathryn L; Craig, Michael C; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan G; Murphy, Kieran C; Fiksinski, Ania; Koops, Sanne; Vorstman, Jacob; Crowley, T Blaine; Emanuel, Beverly S; Gur, Raquel E; McDonald-McGinn, Donna M; Roalf, David R; Ruparel, Kosha; Schmitt, J Eric; Zackai, Elaine H; Durdle, Courtney A; Goodrich-Hunsaker, Naomi J; Simon, Tony J; Bassett, Anne S; Butcher, Nancy J; Chow, Eva W C; Vila-Rodriguez, Fidel; Cunningham, Adam; Doherty, Joanne; Linden, David E; Moss, Hayley; Owen, Michael J; van den Bree, Marianne; Crossley, Nicolas A; Repetto, Gabriela M; Thompson, Paul M; Bearden, Carrie E The American journal of psychiatry. 32046535 2020 07 01;
Pan-mammalian analysis of molecular constraints underlying extended lifespan. Kowalczyk, Amanda; Partha, Raghavendran; Clark, Nathan L; Chikina, Maria eLife 32043462 2020 02 11
The empirical replicability of task-based fMRI as a function of sample size. Bossier, Han; Roels, Sanne P; Seurinck, Ruth; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner Dipl-Psych, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Moerkerke, Beatrijs; IMAGEN Consortium NeuroImage. 32036019 2020 05 15;
Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data. Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Wang, Chen; Liu, Hongfang; Jiang, Guoqian JAMIA open. 32025655 2019 Dec;
Genetic contributors to risk of schizophrenia in the presence of a 22q11.2 deletion. Cleynen, Isabelle; Engchuan, Worrawat; Hestand, Matthew S; Heung, Tracy; Holleman, Aaron M; Johnston, H Richard; Monfeuga, Thomas; McDonald-McGinn, Donna M; Gur, Raquel E; Morrow, Bernice E; Swillen, Ann; Vorstman, Jacob A S; Bearden, Carrie E; Chow, Eva W C; van den Bree, Marianne; Emanuel, Beverly S; Vermeesch, Joris R; Warren, Stephen T; Owen, Michael J; Chopra, Pankaj; Cutler, David J; Duncan, Richard; Kotlar, Alex V; Mulle, Jennifer G; Voss, Anna J; Zwick, Michael E; Diacou, Alexander; Golden, Aaron; Guo, Tingwei; Lin, Jhih-Rong; Wang, Tao; Zhang, Zhengdong; Zhao, Yingjie; Marshall, Christian; Merico, Daniele; Jin, Andrea; Lilley, Brenna; Salmons, Harold I; Tran, Oanh; Holmans, Peter; Pardinas, Antonio; Walters, James T R; Demaerel, Wolfram; Boot, Erik; Butcher, Nancy J; Costain, Gregory A; Lowther, Chelsea; Evers, Rens; van Amelsvoort, Therese A M J; van Duin, Esther; Vingerhoets, Claudia; Breckpot, Jeroen; Devriendt, Koen; Vergaelen, Elfi; Vogels, Annick; Crowley, T Blaine; McGinn, Daniel E; Moss, Edward M; Sharkus, Robert J; Unolt, Marta; Zackai, Elaine H; Calkins, Monica E; Gallagher, Robert S; Gur, Ruben C; Tang, Sunny X; Fritsch, Rosemarie; Ornstein, Claudia; Repetto, Gabriela M; Breetvelt, Elemi; Duijff, Sasja N; Fiksinski, Ania; Moss, Hayley; Niarchou, Maria; Murphy, Kieran C; Prasad, Sarah E; Daly, Eileen M; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan G; Buzzanca, Antonio; Fabio, Fabio Di; Digilio, Maria C; Pontillo, Maria; Marino, Bruno; Vicari, Stefano; Coleman, Karlene; Cubells, Joseph F; Ousley, Opal Y; Carmel, Miri; Gothelf, Doron; Mekori-Domachevsky, Ehud; Michaelovsky, Elena; Weinberger, Ronnie; Weizman, Abraham; Kushan, Leila; Jalbrzikowski, Maria; Armando, Marco; Eliez, Stéphan; Sandini, Corrado; Schneider, Maude; Béna, Frédérique Sloan; Antshel, Kevin M; Fremont, Wanda; Kates, Wendy R; Belzeaux, Raoul; Busa, Tiffany; Philip, Nicole; Campbell, Linda E; McCabe, Kathryn L; Hooper, Stephen R; Schoch, Kelly; Shashi, Vandana; Simon, Tony J; Tassone, Flora; Arango, Celso; Fraguas, David; García-Miñaúr, Sixto; Morey-Canyelles, Jaume; Rosell, Jordi; Suñer, Damià H; Raventos-Simic, Jasna; International 22q11.2DS Brain and Behavior Consortium; Epstein, Michael P; Williams, Nigel M; Bassett, Anne S Molecular psychiatry. 32015465 2020 Feb 03;
Association of relative brain age with tobacco smoking, alcohol consumption, and genetic variants. Ning, Kaida; Zhao, Lu; Matloff, Will; Sun, Fengzhu; Toga, Arthur W Scientific reports 32001736 2020 01 30
Genetic correlations between subcortical brain volumes and psychiatric disorders. Ohi, Kazutaka; Shimada, Takamitsu; Kataoka, Yuzuru; Yasuyama, Toshiki; Kawasaki, Yasuhiro; Shioiri, Toshiki; Thompson, Paul M The British journal of psychiatry : the journal of mental science. 32000869 2020 05;
Decreased functional connectivity of hippocampal subregions and methylation of the NR3C1 gene in Han Chinese adults who lost their only child. Qi, Rongfeng; Luo, Yifeng; Zhang, Li; Weng, Yifei; Surento, Wesley; Xu, Qiang; Jahanshad, Neda; Li, Lingjiang; Cao, Zhihong; Lu, Guang Ming; Thompson, Paul M Psychological medicine 31983347 2020 Jan 27
Knowledge-guided analysis of ''omics'' data using the KnowEnG cloud platform. Blatti 3rd, Charles; Emad, Amin; Berry, Matthew J; Gatzke, Lisa; Epstein, Milt; Lanier, Daniel; Rizal, Pramod; Ge, Jing; Liao, Xiaoxia; Sobh, Omar; Lambert, Mike; Post, Corey S; Xiao, Jinfeng; Groves, Peter; Epstein, Aidan T; Chen, Xi; Srinivasan, Subhashini; Lehnert, Erik; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard M; Song, Jun S; Jongeneel, C Victor; Han, Jiawei; Ravaioli, Umberto; Sobh, Nahil; Bushell, Colleen B; Sinha, Saurabh PLoS biology. 31971940 2020 01;
Tissue-guided LASSO for prediction of clinical drug response using preclinical samples. Huang, Edward W; Bhope, Ameya; Lim, Jing; Sinha, Saurabh; Emad, Amin PLoS computational biology. 31967990 2020 01;
De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population. Kessler, Michael D; Loesch, Douglas P; Perry, James A; Heard-Costa, Nancy L; Taliun, Daniel; Cade, Brian E; Wang, Heming; Daya, Michelle; Ziniti, John; Datta, Soma; Celedón, Juan C; Soto-Quiros, Manuel E; Avila, Lydiana; Weiss, Scott T; Barnes, Kathleen; Redline, Susan S; Vasan, Ramachandran S; Johnson, Andrew D; Mathias, Rasika A; Hernandez, Ryan; Wilson, James G; Nickerson, Deborah A; Abecasis, Goncalo; Browning, Sharon R; Zöllner, Sebastian; O'Connell, Jeffrey R; Mitchell, Braxton D; National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Population Genetics Working Group; O'Connor, Timothy D Proceedings of the National Academy of Sciences of the United States of America 31964835 2020 02 04
Privacy-preserving model learning on a blockchain network-of-networks. Kuo, Tsung-Ting; Kim, Jihoon; Gabriel, Rodney A Journal of the American Medical Informatics Association : JAMIA. 31943009 2020 Mar 01;
Rare copy number variants in over 100,000 European ancestry subjects reveal multiple disease associations. Li, Yun Rose; Glessner, Joseph T; Coe, Bradley P; Li, Jin; Mohebnasab, Maede; Chang, Xiao; Connolly, John; Kao, Charlly; Wei, Zhi; Bradfield, Jonathan; Kim, Cecilia; Hou, Cuiping; Khan, Munir; Mentch, Frank; Qiu, Haijun; Bakay, Marina; Cardinale, Christopher; Lemma, Maria; Abrams, Debra; Bridglall-Jhingoor, Andrew; Behr, Meckenzie; Harrison, Shanell; Otieno, George; Thomas, Alexandria; Wang, Fengxiang; Chiavacci, Rosetta; Wu, Lawrence; Hadley, Dexter; Goldmuntz, Elizabeth; Elia, Josephine; Maris, John; Grundmeier, Robert; Devoto, Marcella; Keating, Brendan; March, Michael; Pellagrino, Renata; Grant, Struan F A; Sleiman, Patrick M A; Li, Mingyao; Eichler, Evan E; Hakonarson, Hakon Nature communications. 31937769 2020 01 14;
Sympathetic activity contributes to the fMRI signal. Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, Jeff Communications biology. 31925226 2019 Nov 18;
Ancestral Folate Promotes Neuronal Regeneration in Serial Generations of Progeny. Patel, Nirav J; Hogan, Kirk J; Rizk, Elias; Stewart, Krista; Madrid, Andy; Vadakkadath Meethal, Sivan; Alisch, Reid; Borth, Laura; Papale, Ligia A; Ondoma, Solomon; Gorges, Logan R; Weber, Kara; Lake, Wendell; Bauer, Andrew; Hariharan, Nithya; Kuehn, Thomas; Cook, Thomas; Keles, Sunduz; Newton, Michael A; Iskandar, Bermans J Molecular neurobiology. 31919777 2020 Jan 10;
BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization. Liang, Lifan; Zhu, Kunju; Lu, Songjian Bioinformatics (Oxford, England) 31913438 2020 07 01
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data. Pratapa, Aditya; Jalihal, Amogh P; Law, Jeffrey N; Bharadwaj, Aditya; Murali, T M Nature methods. 31907445 2020 Feb;
Machine and deep learning approaches for cancer drug repurposing. Issa, Naiem T; Stathias, Vasileios; Schürer, Stephan; Dakshanamurthy, Sivanesan Seminars in cancer biology. 31904426 2020 Jan 03;
Brain Imaging Genomics: Integrated Analysis and Machine Learning. Shen, Li; Thompson, Paul M Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. 31902950 2020 Jan;
Impaired vigilance networks in temporal lobe epilepsy: Mechanisms and clinical implications. Englot, Dario J; Morgan, Victoria L; Chang, Catie Epilepsia. 31901182 2020 Feb;
Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma. Chen, Bin; Garmire, Lana; Calvisi, Diego F; Chua, Mei-Sze; Kelley, Robin K; Chen, Xin Nature reviews. Gastroenterology & hepatology. 31900465 2020 Apr;
Large-Scale Simultaneous Testing of Cross-Covariance Matrices with Applications to PheWAS. Cai, Tianxi; Cai, T Tony; Liao, Katherine; Liu, Weidong Statistica Sinica. 31889766 2019 Apr;
On the Downstream Performance of Compressed Word Embeddings. May, Avner; Zhang, Jian; Dao, Tri; Ré, Christopher Advances in neural information processing systems. 31885428 2019 Dec;
Slice-based Learning: A Programming Model for Residual Learning in Critical Data Slices. Chen, Vincent S; Wu, Sen; Weng, Zhenzhen; Ratner, Alexander; Ré, Christopher Advances in neural information processing systems. 31871391 2019 Dec;
A Geometric Framework for Feature Mappings in Multimodal Fusion of Brain Image Data. Zhang, Wen; Mi, Liang; Thompson, Paul M; Wang, Yalin Information processing in medical imaging : proceedings of the ... conference. 31871388 2019 Jun;
Prevalence of Inherited Mutations in Breast Cancer Predisposition Genes among Women in Uganda and Cameroon. Adedokun, Babatunde; Zheng, Yonglan; Ndom, Paul; Gakwaya, Antony; Makumbi, Timothy; Zhou, Alicia Y; Yoshimatsu, Toshio F; Rodriguez, Alex; Madduri, Ravi K; Foster, Ian T; Sallam, Aminah; Olopade, Olufunmilayo I; Huo, Dezheng Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 31871109 2020 Feb;
Analytic and Data Sharing Options in Real-World Multidatabase Studies of Comparative Effectiveness and Safety of Medical Products. Toh, Sengwee Clinical pharmacology and therapeutics. 31869442 2019 Dec 23;
Heterogeneous network embedding enabling accurate disease association predictions. Xiong, Yun; Guo, Mengjie; Ruan, Lu; Kong, Xiangnan; Tang, Chunlei; Zhu, Yangyong; Wang, Wei BMC medical genomics. 31865913 2019 12 23;
Altered white matter microstructural organization in posttraumatic stress disorder across 3047 adults: results from the PGC-ENIGMA PTSD consortium. Dennis, Emily L; Disner, Seth G; Fani, Negar; Salminen, Lauren E; Logue, Mark; Clarke, Emily K; Haswell, Courtney C; Averill, Christopher L; Baugh, Lee A; Bomyea, Jessica; Bruce, Steven E; Cha, Jiook; Choi, Kyle; Davenport, Nicholas D; Densmore, Maria; du Plessis, Stefan; Forster, Gina L; Frijling, Jessie L; Gonenc, Atilla; Gruber, Staci; Grupe, Daniel W; Guenette, Jeffrey P; Hayes, Jasmeet; Hofmann, David; Ipser, Jonathan; Jovanovic, Tanja; Kelly, Sinead; Kennis, Mitzy; Kinzel, Philipp; Koch, Saskia B J; Koerte, Inga; Koopowitz, Sheri; Korgaonkar, Mayuresh; Krystal, John; Lebois, Lauren A M; Li, Gen; Magnotta, Vincent A; Manthey, Antje; May, Geoff J; Menefee, Deleene S; Nawijn, Laura; Nelson, Steven M; Neufeld, Richard W J; Nitschke, Jack B; O'Doherty, Daniel; Peverill, Matthew; Ressler, Kerry J; Roos, Annerine; Sheridan, Margaret A; Sierk, Anika; Simmons, Alan; Simons, Raluca M; Simons, Jeffrey S; Stevens, Jennifer; Suarez-Jimenez, Benjamin; Sullivan, Danielle R; Théberge, Jean; Tran, Jana K; van den Heuvel, Leigh; van der Werff, Steven J A; van Rooij, Sanne J H; van Zuiden, Mirjam; Velez, Carmen; Verfaellie, Mieke; Vermeiren, Robert R J M; Wade, Benjamin S C; Wager, Tor; Walter, Henrik; Winternitz, Sherry; Wolff, Jonathan; York, Gerald; Zhu, Ye; Zhu, Xi; Abdallah, Chadi G; Bryant, Richard; Daniels, Judith K; Davidson, Richard J; Fercho, Kelene A; Franz, Carol; Geuze, Elbert; Gordon, Evan M; Kaufman, Milissa L; Kremen, William S; Lagopoulos, Jim; Lanius, Ruth A; Lyons, Michael J; McCauley, Stephen R; McGlinchey, Regina; McLaughlin, Katie A; Milberg, William; Neria, Yuval; Olff, Miranda; Seedat, Soraya; Shenton, Martha; Sponheim, Scott R; Stein, Dan J; Stein, Murray B; Straube, Thomas; Tate, David F; van der Wee, Nic J A; Veltman, Dick J; Wang, Li; Wilde, Elisabeth A; Thompson, Paul M; Kochunov, Peter; Jahanshad, Neda; Morey, Rajendra A Molecular psychiatry. 31857689 2019 Dec 19;
ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest. Li, Jiajin; Jew, Brandon; Zhan, Lingyu; Hwang, Sungoo; Coppola, Giovanni; Freimer, Nelson B; Sul, Jae Hoon PLoS computational biology. 31851693 2019 Dec;
Association of Gray Matter and Personality Development With Increased Drunkenness Frequency During Adolescence. Robert, Gabriel H; Luo, Qiang; Yu, Tao; Chu, Congying; Ing, Alex; Jia, Tianye; Papadopoulos Orfanos, Dimitri; Burke-Quinlan, Erin; Desrivières, Sylvane; Ruggeri, Barbara; Spechler, Philip; Chaarani, Bader; Tay, Nicole; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Barker, Ted; Garavan, Hugh; Schumann, Gunter; IMAGEN Consortium JAMA psychiatry 31851304 2020 04 01
Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases. Salfati, Elias L; Spencer, Emily G; Topol, Sarah E; Muse, Evan D; Rueda, Manuel; Lucas, Jonathan R; Wagner, Glenn N; Campman, Steven; Topol, Eric J; Torkamani, Ali Genome medicine. 31847883 2019 12 17;
Analysis of stimulus-induced brain dynamics during naturalistic paradigms. Simony, Erez; Chang, Catie NeuroImage. 31843711 2019 Dec 13;
Learning High-dimensional Generalized Linear Autoregressive Models. Hall, Eric C; Raskutti, Garvesh; Willett, Rebecca M IEEE transactions on information theory. 31839683 2019 Apr;
Research Themes and Trends in Ten Top-Ranked Nephrology Journals: A Text Mining Analysis. Zengul, Ferhat D; Lee, Timmy; Delen, Dursun; Almehmi, Ammar; Ivankova, Nataliya V; Mehta, Tapan; Topuz, Kazim American journal of nephrology. 31838480 2020;
Leveraging allelic imbalance to refine fine-mapping for eQTL studies. Zou, Jennifer; Hormozdiari, Farhad; Jew, Brandon; Castel, Stephane E; Lappalainen, Tuuli; Ernst, Jason; Sul, Jae Hoon; Eskin, Eleazar PLoS genetics. 31834882 2019 12;
Engineered BRET-Based Biologic Light Sources Enable Spatiotemporal Control over Diverse Optogenetic Systems. Parag-Sharma, Kshitij; O'Banion, Colin P; Henry, Erin C; Musicant, Adele M; Cleveland, John L; Lawrence, David S; Amelio, Antonio L ACS synthetic biology. 31834783 2020 01 17;
Cortical Microstructural Alterations in Mild Cognitive Impairment and Alzheimer's Disease Dementia. Vogt, Nicholas M; Hunt, Jack F; Adluru, Nagesh; Dean, Douglas C; Johnson, Sterling C; Asthana, Sanjay; Yu, John-Paul J; Alexander, Andrew L; Bendlin, Barbara B Cerebral cortex (New York, N.Y. : 1991) 31833550 2020 05 14
Cortical Surfaces Mediate the Relationship Between Polygenic Scores for Intelligence and General Intelligence. Lett, Tristram A; Vogel, Bob O; Ripke, Stephan; Wackerhagen, Carolin; Erk, Susanne; Awasthi, Swapnil; Trubetskoy, Vassily; Brandl, Eva J; Mohnke, Sebastian; Veer, Ilya M; Nöthen, Markus M; Rietschel, Marcella; Degenhardt, Franziska; Romanczuk-Seiferth, Nina; Witt, Stephanie H; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Tost, Heike; Meyer-Lindenberg, Andreas; Heinz, Andreas; Walter, Henrik; IMAGEN consortium Cerebral cortex (New York, N.Y. : 1991). 31828294 2020 04 14;
Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. Barry, Christopher; Schmitz, Matthew T; Argus, Cara; Bolin, Jennifer M; Probasco, Mitchell D; Leng, Ning; Duffin, Bret M; Steill, John; Swanson, Scott; McIntosh, Brian E; Stewart, Ron; Kendziorski, Christina; Thomson, James A; Bacher, Rhonda PLoS computational biology. 31815944 2019 12;
Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets. Morrow, Alyssa Kramer; He, George Zhixuan; Nothaft, Frank Austin; Tu, Eric Tongching; Paschall, Justin; Yosef, Nir; Joseph, Anthony Douglas Cell systems. 31812694 2019 12 18;
Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group. Jia, Tianye; Chu, Congying; Liu, Yun; van Dongen, Jenny; Papastergios, Evangelos; Armstrong, Nicola J; Bastin, Mark E; Carrillo-Roa, Tania; den Braber, Anouk; Harris, Mathew; Jansen, Rick; Liu, Jingyu; Luciano, Michelle; Ori, Anil P S; Roiz Santiañez, Roberto; Ruggeri, Barbara; Sarkisyan, Daniil; Shin, Jean; Sungeun, Kim; Tordesillas Gutiérrez, Diana; Van't Ent, Dennis; Ames, David; Artiges, Eric; Bakalkin, Georgy; Banaschewski, Tobias; Bokde, Arun L W; Brodaty, Henry; Bromberg, Uli; Brouwer, Rachel; Büchel, Christian; Burke Quinlan, Erin; Cahn, Wiepke; de Zubicaray, Greig I; Ehrlich, Stefan; Ekström, Tomas J; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hoare, Jacqueline; Ittermann, Bernd; Jahanshad, Neda; Jiang, Jiyang; Kwok, John B; Martin, Nicholas G; Martinot, Jean-Luc; Mather, Karen A; McMahon, Katie L; McRae, Allan F; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Sämann, Philipp G; Schofield, Peter R; Smolka, Michael N; Stein, Dan J; Strike, Lachlan T; Teeuw, Jalmar; Thalamuthu, Anbupalam; Trollor, Julian; Walter, Henrik; Wardlaw, Joanna M; Wen, Wei; Whelan, Robert; Apostolova, Liana G; Binder, Elisabeth B; Boomsma, Dorret I; Calhoun, Vince; Crespo-Facorro, Benedicto; Deary, Ian J; Hulshoff Pol, Hilleke; Ophoff, Roel A; Pausova, Zdenka; Sachdev, Perminder S; Saykin, Andrew; Wright, Margaret J; Thompson, Paul M; Schumann, Gunter; Desrivières, Sylvane Molecular psychiatry. 31811260 2019 Dec 06;
Privacy-protecting estimation of adjusted risk ratios using modified Poisson regression in multi-center studies. Shu, Di; Young, Jessica G; Toh, Sengwee BMC medical research methodology. 31805872 2019 Dec 05;
Learning the Structure of a Nonstationary Vector Autoregression. Malinsky, Daniel; Spirtes, Peter Proceedings of machine learning research. 31803862 2019 Apr;
Reactome and ORCID-fine-grained credit attribution for community curation. Viteri, Guilherme; Matthews, Lisa; Varusai, Thawfeek; Gillespie, Marc; Milacic, Marija; Cook, Justin; Weiser, Joel; Shorser, Solomon; Sidiropoulos, Konstantinos; Fabregat, Antonio; Haw, Robin; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning Database : the journal of biological databases and curation. 31802127 2019 01 01;
Recursive Feature Elimination by Sensitivity Testing. Escanilla, Nicholas Sean; Hellerstein, Lisa; Kleiman, Ross; Kuang, Zhaobin; Shull, James D; Page, David Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications. 31799516 2018 Dec;
Navigating ethical quandaries with the privacy dilemma of biomedical datasets. Gürsoy, Gamze; Doerr, Megan; Wilbanks, John; Wagner, Jennifer K; Tang, Haixu; Brenner, Steven E Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 31797643 2020;
From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer. Tao, Yifeng; Cai, Chunhui; Cohen, William W; Lu, Xinghua Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 31797588 2020;
Expertise and Engagement: Re-Designing Citizen Science Games With Players' Minds in Mind. Miller, Josh Aaron; Narayan, Uttkarsh; Hantsbarger, Matthew; Cooper, Seth; El-Nasr, Magy Seif FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. 31788674 2019 Aug;
A Kernel Theory of Modern Data Augmentation. Dao, Tri; Gu, Albert; Ratner, Alexander J; Smith, Virginia; De Sa, Christopher; Ré, Christopher Proceedings of machine learning research. 31777848 2019 Jun;
Learning Fast Algorithms for Linear Transforms Using Butterfly Factorizations. Dao, Tri; Gu, Albert; Eichhorn, Matthew; Rudra, Atri; Ré, Christopher Proceedings of machine learning research. 31777847 2019 Jun;
Low-Precision Random Fourier Features for Memory-Constrained Kernel Approximation. Zhang, Jian; May, Avner; Dao, Tri; Ré, Christopher Proceedings of machine learning research. 31777846 2019 Apr;
Snuba: Automating Weak Supervision to Label Training Data. Varma, Paroma; Ré, Christopher Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 31777681 2018 Nov;
Snorkel DryBell: A Case Study in Deploying Weak Supervision at Industrial Scale. Bach, Stephen H; Rodriguez, Daniel; Liu, Yintao; Luo, Chong; Shao, Haidong; Xia, Cassandra; Sen, Souvik; Ratner, Alex; Hancock, Braden; Alborzi, Houman; Kuchhal, Rahul; Ré, Chris; Malkin, Rob Proceedings. ACM-Sigmod International Conference on Management of Data. 31777414 2019 Jun-Jul;
Designing Videogames to Crowdsource Accelerometer Data Annotation for Activity Recognition Research. Ponnada, Aditya; Cooper, Seth; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, Stephen Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play. 31768505 2019 Oct;
Sympathetic activity contributes to the fMRI signal. Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, Jeff Communications biology. 31754651 2019;
Subcortical surface morphometry in substance dependence: An ENIGMA addiction working group study. Chye, Yann; Mackey, Scott; Gutman, Boris A; Ching, Christopher R K; Batalla, Albert; Blaine, Sara; Brooks, Samantha; Caparelli, Elisabeth C; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Jahanshad, Neda; Kaag, Anne M; Korucuoglu, Ozlem; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Meda, Shashwath A; Momenan, Reza; Morales, Angelica; Orr, Catherine; Paulus, Martin P; Pearlson, Godfrey; Reneman, Liesbeth; Schmaal, Lianne; Sinha, Rajita; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Tang, Deborah; Uhlmann, Anne; van Holst, Ruth; Veltman, Dick J; Verdejo-Garcia, Antonio; Wiers, Reinout W; Yücel, Murat; Thompson, Paul M; Conrod, Patricia; Garavan, Hugh Addiction biology. 31746534 2019 Nov 20;
Genotype-dependent epigenetic regulation of DLGAP2 in alcohol use and dependence. Meng, Weida; Sjöholm, Louise K; Kononenko, Olga; Tay, Nicole; Zhang, Dandan; Sarkisyan, Daniil; Geske, Jennifer R; Ing, Alex; Qiu, Wenqing; Watanabe, Hiroyuki; Almamoun, Radwa; Frieling, Helge; Bleich, Stefan; Cui, Donghong; Biernacka, Joanna M; Mayfield, R Dayne; Dang, Yongjun; Karpyak, Victor M; Schumann, Gunter; IMAGEN Consortium; Bakalkin, Georgy; Ekström, Tomas J; Rüegg, Joelle; Liu, Yun Molecular psychiatry 31745236 2021 08
When can Multi-Site Datasets be Pooled for Regression? Hypothesis Tests, ?2-consistency and Neuroscience Applications. Zhou, Hao Henry; Zhang, Yilin; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas Proceedings of machine learning research. 31742253 2017 Aug;
Nanopore native RNA sequencing of a human poly(A) transcriptome. Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston Nature methods 31740818 2019 12
Interaction effect of alcohol consumption and Alzheimer disease polygenic risk score on the brain cortical thickness of cognitively normal subjects. Matloff, William J; Zhao, Lu; Ning, Kaida; Conti, David V; Toga, Arthur W Alcohol (Fayetteville, N.Y.). 31734309 2020 Jun;
Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. Khatib, Firas; Desfosses, Ambroise; Foldit Players; Koepnick, Brian; Flatten, Jeff; Popovi?, Zoran; Baker, David; Cooper, Seth; Gutsche, Irina; Horowitz, Scott PLoS biology. 31714936 2019 11;
Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data. Pomaznoy, Mikhail; Sethi, Ashu; Greenbaum, Jason; Peters, Bjoern Scientific reports. 31704962 2019 Nov 08;
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Stathias, Vasileios; Turner, John; Koleti, Amar; Vidovic, Dusica; Cooper, Daniel; Fazel-Najafabadi, Mehdi; Pilarczyk, Marcin; Terryn, Raymond; Chung, Caty; Umeano, Afoma; Clarke, Daniel J B; Lachmann, Alexander; Evangelista, John Erol; Ma'ayan, Avi; Medvedovic, Mario; Schürer, Stephan C Nucleic acids research. 31701147 2020 01 08;
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Deutsch, Eric W; Bandeira, Nuno; Sharma, Vagisha; Perez-Riverol, Yasset; Carver, Jeremy J; Kundu, Deepti J; García-Seisdedos, David; Jarnuczak, Andrew F; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; Hermjakob, Henning; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan A Nucleic acids research. 31686107 2020 Jan 08;
FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. Clarke, Daniel J B; Wang, Lily; Jones, Alex; Wojciechowicz, Megan L; Torre, Denis; Jagodnik, Kathleen M; Jenkins, Sherry L; McQuilton, Peter; Flamholz, Zachary; Silverstein, Moshe C; Schilder, Brian M; Robasky, Kimberly; Castillo, Claris; Idaszak, Ray; Ahalt, Stanley C; Williams, Jason; Schurer, Stephan; Cooper, Daniel J; de Miranda Azevedo, Ricardo; Klenk, Juergen A; Haendel, Melissa A; Nedzel, Jared; Avillach, Paul; Shimoyama, Mary E; Harris, Rayna M; Gamble, Meredith; Poten, Rudy; Charbonneau, Amanda L; Larkin, Jennie; Brown, C Titus; Bonazzi, Vivien R; Dumontier, Michel J; Sansone, Susanna-Assunta; Ma'ayan, Avi Cell systems 31677972 2019 11 27
Identifying biological markers for improved precision medicine in psychiatry. Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium Molecular psychiatry. 31676814 2020 Feb;
Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. Postema, Merel C; van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Filho, Geraldo Busatto; Calderoni, Sara; Calvo, Rosa; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis S; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Fair, Damien; Fedor, Jennifer; Feng, Xin; Fitzgerald, Jackie; Floris, Dorothea L; Freitag, Christine M; Gallagher, Louise; Glahn, David C; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; King, Joseph A; Kong, Xiang Zhen; Lazaro, Luisa; Lerch, Jason P; Luna, Beatriz; Martinho, Mauricio M; McGrath, Jane; Medland, Sarah E; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Puig, Olga; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot J; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Thompson, Paul M; Fisher, Simon E; Buitelaar, Jan K; Francks, Clyde Nature communications 31673008 2019 10 31
Risk factors for development of aminoglycoside resistance among gram-negative rods. Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists. 31665763 2019 10 30;
Association of Copy Number Variation of the 15q11.2 BP1-BP2 Region With Cortical and Subcortical Morphology and Cognition. Writing Committee for the ENIGMA-CNV Working Group; van der Meer, Dennis; Sønderby, Ida E; Kaufmann, Tobias; Walters, G Bragi; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Micael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas B; Blangero, John; Boomsma, Dorret I; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Cahn, Wiepke; Calhoun, Vince D; Caspers, Svenja; Cavalleri, Gianpiero L; Ching, Christopher R K; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivieres, Sylvane; Di Forti, Marta; Doherty, Joanne L; Donohoe, Gary; Ehrlich, Stefan; Eising, Else; Espeseth, Thomas; Fisher, Simon E; Fladby, Tormod; Frei, Oleksandr; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans J; Groenewold, Nynke A; Gústafsson, Ómar; Haavik, Jan; Haberg, Asta K; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Hibar, Derrek P; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Ikeda, Masashi; Jacquemont, Sébastien; Jahanshad, Neda; Jockwitz, Christiane; Johansson, Stefan; Jönsson, Erik G; Kikuchi, Masataka; Knowles, Emma E M; Kwok, John B; Le Hellard, Stephanie; Linden, David E J; Liu, Jingyu; Lundervold, Arvid; Lundervold, Astri J; Martin, Nicholas G; Mather, Karen A; Mathias, Samuel R; McMahon, Katie L; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Moreau, Clara; Morris, Derek W; Mühleisen, Thomas W; Murray, Robin M; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel A; Owen, Michael J; Paus, Tomas; Pausova, Zdenka; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Quinlan, Erin Burke; Reinbold, Céline S; Reis Marques, Tiago; Rucker, James J H; Sachdev, Perminder S; Sando, Sigrid B; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Silva, Ana I; Sisodiya, Sanjay M; Steen, Vidar M; Stein, Dan J; Strike, Lachlan T; Tamnes, Christian K; Teumer, Alexander; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; Uhlmann, Anne; Úlfarsson, Magnús Ö; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Wen, Wei; Wittfeld, Katharina; Wright, Margaret J; Zayats, Tetyana; Dale, Anders M; Djurovic, Srdjan; Agartz, Ingrid; Westlye, Lars T; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul M; Andreassen, Ole A JAMA psychiatry 31665216 2020 04 01
A Novel Machine Learning Model Developed to Assist in Patient Selection for Outpatient Total Shoulder Arthroplasty. Biron, Dustin R; Sinha, Ishan; Kleiner, Justin E; Aluthge, Dilum P; Goodman, Avi D; Sarkar, I Neil; Cohen, Eric; Daniels, Alan H The Journal of the American Academy of Orthopaedic Surgeons. 31663914 2019 Oct 24;
Effects of initial planning on task execution performance of older adults: A naturalistic assessment paradigm. Brown, Katelyn D; Schmitter-Edgecombe, Maureen Journal of clinical and experimental neuropsychology 31658865 2020 02
TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome. Garlid, Anders O; Schaffer, Calvin T; Kim, Jaewoo; Bhatt, Hirsh; Guevara-Gonzalez, Vladimir; Ping, Peipei Gene. 31647997 2020 Feb 05;
SMARTS: the social media-based addiction recovery and intervention targeting server. Jha, Deeptanshu; Singh, Rahul Bioinformatics (Oxford, England) 31647520 2019 Oct 24
Behavioral problems in perinatally HIV-infected young children with early antiretroviral therapy and HIV-exposed uninfected young children: prevalence and associated factors. Jantarabenjakul, Watsamon; Chonchaiya, Weerasak; Puthanakit, Thanyawee; Anugulruengkitt, Suvaporn; Theerawit, Tuangtip; Payapanon, Jesdapron; Sophonphan, Jiratchaya; Veeravigrom, Montida; Jahanshad, Neda; Thompson, Paul M; Ananworanich, Jintanat; Malee, Kathleen; Pancharoen, Chitsanu; DOET study AIDS care. 31635484 2020 04;
Effects of ketamine and midazolam on resting state connectivity and comparison with ENIGMA connectivity deficit patterns in schizophrenia. Adhikari, Bhim M; Dukart, Juergen; Hipp, Joerg F; Forsyth, Anna; McMillan, Rebecca; Muthukumaraswamy, Suresh D; Ryan, Meghann C; Hong, L Elliot; Eickhoff, Simon B; Jahandshad, Neda; Thompson, Paul M; Rowland, Laura M; Kochunov, Peter Human brain mapping. 31633254 2020 Feb 15;
Investigating genetic links between grapheme-colour synaesthesia and neuropsychiatric traits. Tilot, Amanda K; Vino, Arianna; Kucera, Katerina S; Carmichael, Duncan A; van den Heuvel, Loes; den Hoed, Joery; Sidoroff-Dorso, Anton V; Campbell, Archie; Porteous, David J; St Pourcain, Beate; van Leeuwen, Tessa M; Ward, Jamie; Rouw, Romke; Simner, Julia; Fisher, Simon E Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 31630655 2019 12 09;
Hierarchical associations of alcohol use disorder symptoms in late adolescence with markers during early adolescence. Kühn, Simone; Lisofsky, Nina; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Gallinat, Jürgen; IMAGEN Consortium Addictive behaviors. 31622946 2020 01;
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. Hong, Na; Wen, Andrew; Stone, Daniel J; Tsuji, Shintaro; Kingsbury, Paul R; Rasmussen, Luke V; Pacheco, Jennifer A; Adekkanattu, Prakash; Wang, Fei; Luo, Yuan; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian Journal of biomedical informatics. 31622801 2019 Nov;
Systemic Mitochondrial Oxidative Phosphorylation Protein Levels Correlate with Neuroimaging Measures in Chronically HIV-Infected Individuals. Kallianpur, Kalpana J; Walker, Maegen; Gerschenson, Mariana; Shikuma, Cecilia M; Gangcuangco, Louie Mar A; Kohorn, Lindsay; Libutti, Daniel E; Nir, Talia M; Jahanshad, Neda; Thompson, Paul M; Paul, Robert AIDS research and human retroviruses. 31617381 2020 01;
Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia. Paik, Hyojung; Kan, Matthew J; Rappoport, Nadav; Hadley, Dexter; Sirota, Marina; Chen, Bin; Manber, Udi; Cho, Seong Beom; Butte, Atul J Scientific data. 31615985 2019 10 15;
An overlapping pattern of cerebral cortical thinning is associated with both positive symptoms and aggression in schizophrenia via the ENIGMA consortium. Wong, Ting Yat; Radua, Joaquim; Pomarol-Clotet, Edith; Salvador, Raymond; Albajes-Eizagirre, Anton; Solanes, Aleix; Canales-Rodriguez, Erick J; Guerrero-Pedraza, Amalia; Sarro, Salvador; Kircher, Tilo; Nenadic, Igor; Krug, Axel; Grotegerd, Dominik; Dannlowski, Udo; Borgwardt, Stefan; Riecher-Rössler, Anita; Schmidt, Andre; Andreou, Christina; Huber, Christian G; Turner, Jessica; Calhoun, Vince; Jiang, Wenhao; Clark, Sarah; Walton, Esther; Spalletta, Gianfranco; Banaj, Nerisa; Piras, Fabrizio; Ciullo, Valentina; Vecchio, Daniela; Lebedeva, Irina; Tomyshev, Alexander S; Kaleda, Vasily; Klushnik, Tatyana; Filho, Geraldo Busatto; Zanetti, Marcus Vinicius; Serpa, Mauricio Henriques; Penteado Rosa, Pedro Gomes; Hashimoto, Ryota; Fukunaga, Masaki; Richter, Anja; Krämer, Bernd; Gruber, Oliver; Voineskos, Aristotle N; Dickie, Erin W; Tomecek, David; Skoch, Antonin; Spaniel, Filip; Hoschl, Cyril; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Holleran, Laurena; Ciufolini, Simone; Marques, Tiago Reis; Dazzan, Paola; Murray, Robin; Lamsma, Jelle; Cahn, Wiepke; van Haren, Neeltje; Díaz-Zuluaga, Ana M; Pineda-Zapata, Julián A; Vargas, Cristian; López-Jaramillo, Carlos; van Erp, Theo G M; Gur, Ruben C; Nickl-Jockschat, Thomas Psychological medicine. 31615588 2020 09;
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. Liao, Katherine P; Sun, Jiehuan; Cai, Tianrun A; Link, Nicholas; Hong, Chuan; Huang, Jie; Huffman, Jennifer E; Gronsbell, Jessica; Zhang, Yichi; Ho, Yuk-Lam; Castro, Victor; Gainer, Vivian; Murphy, Shawn N; O'Donnell, Christopher J; Gaziano, J Michael; Cho, Kelly; Szolovits, Peter; Kohane, Isaac S; Yu, Sheng; Cai, Tianxi Journal of the American Medical Informatics Association : JAMIA. 31613361 2019 11 01;
DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark. Linderman, Michael D; Chia, Davin; Wallace, Forrest; Nothaft, Frank A BMC bioinformatics. 31604420 2019 Oct 11;
Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways. Horgusluoglu-Moloch, Emrin; Risacher, Shannon L; Crane, Paul K; Hibar, Derrek; Thompson, Paul M; Saykin, Andrew J; Nho, Kwangsik; Alzheimer?s Disease Neuroimaging Initiative (ADNI) Scientific reports. 31601890 2019 Oct 10;
Transcriptional regulatory model of fibrosis progression in the human lung. McDonough, John E; Ahangari, Farida; Li, Qin; Jain, Siddhartha; Verleden, Stijn E; Herazo-Maya, Jose; Vukmirovic, Milica; DeIuliis, Giuseppe; Tzouvelekis, Argyrios; Tanabe, Naoya; Chu, Fanny; Yan, Xiting; Verschakelen, Johny; Homer, Robert J; Manatakis, Dimitris V; Zhang, Junke; Ding, Jun; Maes, Karen; De Sadeleer, Laurens; Vos, Robin; Neyrinck, Arne; Benos, Panayiotis V; Bar-Joseph, Ziv; Tantin, Dean; Hogg, James C; Vanaudenaerde, Bart M; Wuyts, Wim A; Kaminski, Naftali JCI insight. 31600171 2019 Nov 14;
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. Deutsch, Eric W; Lane, Lydie; Overall, Christopher M; Bandeira, Nuno; Baker, Mark S; Pineau, Charles; Moritz, Robert L; Corrales, Fernando; Orchard, Sandra; Van Eyk, Jennifer E; Paik, Young-Ki; Weintraub, Susan T; Vandenbrouck, Yves; Omenn, Gilbert S Journal of proteome research. 31599596 2019 Dec 06;
An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling. Hong, Na; Wang, Kui; Wu, Sizhu; Shen, Feichen; Yao, Lixia; Jiang, Guoqian Journal of healthcare informatics research. 31598581 2019 Sep;
A Logical Model of Homology for Comparative Biology. Mabee, Paula M; Balhoff, James P; Dahdul, Wasila M; Lapp, Hilmar; Mungall, Christopher J; Vision, Todd J Systematic biology 31596473 2020 03 01
Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations. Ong, Carmichael F; Geijtenbeek, Thomas; Hicks, Jennifer L; Delp, Scott L PLoS computational biology. 31589597 2019 10;
Noninvasive Detection of Colorectal Carcinomas Using Serum Protein Biomarkers. Ivancic, Melanie M; Megna, Bryant W; Sverchkov, Yuriy; Craven, Mark; Reichelderfer, Mark; Pickhardt, Perry J; Sussman, Michael R; Kennedy, Gregory D The Journal of surgical research. 31586890 2020 02;
Medical device surveillance with electronic health records. Callahan, Alison; Fries, Jason A; Ré, Christopher; Huddleston 3rd, James I; Giori, Nicholas J; Delp, Scott; Shah, Nigam H NPJ digital medicine. 31583282 2019;
Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. Ignjatovic, Vera; Geyer, Philipp E; Palaniappan, Krishnan K; Chaaban, Jessica E; Omenn, Gilbert S; Baker, Mark S; Deutsch, Eric W; Schwenk, Jochen M Journal of proteome research. 31573204 2019 Dec 06;
Sample size considerations for comparing dynamic treatment regimens in a sequential multiple-assignment randomized trial with a continuous longitudinal outcome. Seewald, Nicholas J; Kidwell, Kelley M; Nahum-Shani, Inbal; Wu, Tianshuang; McKay, James R; Almirall, Daniel Statistical methods in medical research. 31571526 2019 Oct 01;
Training Complex Models with Multi-Task Weak Supervision. Ratner, Alexander; Hancock, Braden; Dunnmon, Jared; Sala, Frederic; Pandey, Shreyash; Ré, Christopher Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence. 31565535 2019 Jan-Feb;
Robot-Enabled Support of Daily Activities in Smart Home Environments. Wilson, Garrett; Pereyda, Christopher; Raghunath, Nisha; de la Cruz, Gabriel; Goel, Shivam; Nesaei, Sepehr; Minor, Bryan; Schmitter-Edgecombe, Maureen; Taylor, Matthew E; Cook, Diane J Cognitive systems research. 31565029 2019 May;
Safe Expectations: Current State and Future Directions for Medication Safety in Pregnancy Research. Wood, Mollie E; Andrade, Susan E; Toh, Sengwee Clinical therapeutics. 31563392 2019 Sep 25;
Chalcones as a basis for computer-aided drug design: innovative approaches to tackle malaria. Lima, Marilia Nn; Neves, Bruno J; Cassiano, Gustavo C; Gomes, Marcelo N; Tomaz, Kaira Cp; Ferreira, Leticia T; Tavella, Tatyana A; Calit, Juliana; Bargieri, Daniel Y; Muratov, Eugene N; Costa, Fabio Tm; Andrade, Carolina Horta Future medicinal chemistry. 31556721 2019 10;
The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data. Kim, Hosung; Irimia, Andrei; Hobel, Samuel M; Pogosyan, Mher; Tang, Haoteng; Petrosyan, Petros; Blanco, Rita Esquivel Castelo; Duffy, Ben A; Zhao, Lu; Crawford, Karen L; Liew, Sook-Lei; Clark, Kristi; Law, Meng; Mukherjee, Pratik; Manley, Geoffrey T; Van Horn, John D; Toga, Arthur W Frontiers in neuroinformatics 31555116 2019
Domain Generalization via Multidomain Discriminant Analysis. Hu, Shoubo; Zhang, Kun; Chen, Zhitang; Chan, Laiwan Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. 31555066 2019 Jul;
Learning Disentangled Semantic Representation for Domain Adaptation. Cai, Ruichu; Li, Zijian; Wei, Pengfei; Qiao, Jie; Zhang, Kun; Hao, Zhifeng IJCAI : proceedings of the conference. 31555039 2019 Aug;
Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation. Guerrero, Jose M; Adluru, Nagesh; Bendlin, Barbara B; Goldsmith, H Hill; Schaefer, Stacey M; Davidson, Richard J; Kecskemeti, Steven R; Zhang, Hui; Alexander, Andrew L PloS one 31553719 2019
A fast divide-and-conquer sparse Cox regression. Wang, Yan; Hong, Chuan; Palmer, Nathan; Di, Qian; Schwartz, Joel; Kohane, Isaac; Cai, Tianxi Biostatistics (Oxford, England) 31545341 2021 Apr 10
The case for openness in engineering research. Berg, Devin R; Niemeyer, Kyle E F1000Research. 31543946 2018;
Evaluating FAIR maturity through a scalable, automated, community-governed framework. Wilkinson, Mark D; Dumontier, Michel; Sansone, Susanna-Assunta; Bonino da Silva Santos, Luiz Olavo; Prieto, Mario; Batista, Dominique; McQuilton, Peter; Kuhn, Tobias; Rocca-Serra, Philippe; Crosas, Merc?; Schultes, Erik Scientific data. 31541130 2019 09 20;
Predicting pregnancy using large-scale data from a women's health tracking mobile application. Liu, Bo; Shi, Shuyang; Wu, Yongshang; Thomas, Daniel; Symul, Laura; Pierson, Emma; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 31538145 2019 May;
Inferring Multidimensional Rates of Aging from Cross-Sectional Data. Pierson, Emma; Koh, Pang Wei; Hashimoto, Tatsunori; Koller, Daphne; Leskovec, Jure; Eriksson, Nicholas; Liang, Percy Proceedings of machine learning research. 31538144 2019 Apr;
Predicting Dynamic Embedding Trajectory in Temporal Interaction Networks. Kumar, Srijan; Zhang, Xikun; Leskovec, Jure KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 31538030 2019 Aug;
Amalgamating evidence of dynamics. Danks, David; Plis, Sergey Synthese. 31527987 2019 Aug;
Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes. Xue, Yifan; Cooper, Gregory; Cai, Chunhui; Lu, Songjian; Hu, Baoli; Ma, Xiaojun; Lu, Xinghua Scientific reports. 31519988 2019 Sep 13;
Multifaceted protein-protein interaction prediction based on Siamese residual RCNN. Chen, Muhao; Ju, Chelsea J-T; Zhou, Guangyu; Chen, Xuelu; Zhang, Tianran; Chang, Kai-Wei; Zaniolo, Carlo; Wang, Wei Bioinformatics (Oxford, England). 31510705 2019 07 15;
The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment. Zhang, Yi; Manjunath, Mohith; Yan, Jialu; Baur, Brittany A; Zhang, Shilu; Roy, Sushmita; Song, Jun S Frontiers in genetics. 31507631 2019;
Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts. Tsueng, Ginger; Nanis, Max; Fouquier, Jennifer T; Mayers, Michael; Good, Benjamin M; Su, Andrew I Bioinformatics (Oxford, England). 31504205 2019 Sep 03;
dbgap2x: an R package to explore and extract data from the database of Genotypes and Phenotypes (dbGaP). Versmée, Grégoire; Versmée, Laura; Dusenne, Mikaël; Jalali, Niloofar; Avillach, Paul Bioinformatics (Oxford, England) 31504194 2020 02 15
Causal Discovery and Forecasting in Nonstationary Environments with State-Space Models. Huang, Biwei; Zhang, Kun; Gong, Mingming; Glymour, Clark Proceedings of machine learning research. 31497778 2019 Jun;
Data-Driven Approach to Multiple-Source Domain Adaptation. Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun Proceedings of machine learning research. 31497777 2019 Apr;
Low-Dimensional Density Ratio Estimation for Covariate Shift Correction. Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun Proceedings of machine learning research. 31497776 2019 Apr;
A privacy-preserving distributed filtering framework for NLP artifacts. Sadat, Md Nazmus; Aziz, Md Momin Al; Mohammed, Noman; Pakhomov, Serguei; Liu, Hongfang; Jiang, Xiaoqian BMC medical informatics and decision making. 31493797 2019 Sep 07;
Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics. Köhler, Sebastian; Øien, N Christine; Buske, Orion J; Groza, Tudor; Jacobsen, Julius O B; McNamara, Craig; Vasilevsky, Nicole; Carmody, Leigh C; Gourdine, J P; Gargano, Michael; McMurry, Julie A; Danis, Daniel; Mungall, Christopher J; Smedley, Damian; Haendel, Melissa; Robinson, Peter N Current protocols in human genetics. 31479590 2019 Sep;
Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data. Hicks, Allison L; Wheeler, Nicole; Sánchez-Busó, Leonor; Rakeman, Jennifer L; Harris, Simon R; Grad, Yonatan H PLoS computational biology. 31479500 2019 09;
A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS. McMahon, Mary; Contreras, Adrian; Holm, Mikael; Uechi, Tamayo; Forester, Craig M; Pang, Xiaming; Jackson, Cody; Calvert, Meredith E; Chen, Bin; Quigley, David A; Luk, John M; Kelley, R Kate; Gordan, John D; Gill, Ryan M; Blanchard, Scott C; Ruggero, Davide eLife. 31478838 2019 09 03;
White matter disturbances in major depressive disorder: a coordinated analysis across 20 international cohorts in the ENIGMA MDD working group. van Velzen, Laura S; Kelly, Sinead; Isaev, Dmitry; Aleman, Andre; Aftanas, Lyubomir I; Bauer, Jochen; Baune, Bernhard T; Brak, Ivan V; Carballedo, Angela; Connolly, Colm G; Couvy-Duchesne, Baptiste; Cullen, Kathryn R; Danilenko, Konstantin V; Dannlowski, Udo; Enneking, Verena; Filimonova, Elena; Förster, Katharina; Frodl, Thomas; Gotlib, Ian H; Groenewold, Nynke A; Grotegerd, Dominik; Harris, Mathew A; Hatton, Sean N; Hawkins, Emma L; Hickie, Ian B; Ho, Tiffany C; Jansen, Andreas; Kircher, Tilo; Klimes-Dougan, Bonnie; Kochunov, Peter; Krug, Axel; Lagopoulos, Jim; Lee, Renick; Lett, Tristram A; Li, Meng; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; McLellan, Quinn; Meinert, Susanne; Nenadi?, Igor; Osipov, Evgeny; Penninx, Brenda W J H; Portella, Maria J; Repple, Jonathan; Roos, Annerine; Sacchet, Matthew D; Sämann, Philipp G; Schnell, Knut; Shen, Xueyi; Sim, Kang; Stein, Dan J; van Tol, Marie-Jose; Tomyshev, Alexander S; Tozzi, Leonardo; Veer, Ilya M; Vermeiren, Robert; Vives-Gilabert, Yolanda; Walter, Henrik; Walter, Martin; van der Wee, Nic J A; van der Werff, Steven J A; Schreiner, Melinda Westlund; Whalley, Heather C; Wright, Margaret J; Yang, Tony T; Zhu, Alyssa; Veltman, Dick J; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne Molecular psychiatry. 31471575 2019 Aug 30;
Functional Brain Hyperactivations Are Linked to an Electrophysiological Measure of Slow Interhemispheric Transfer Time after Pediatric Moderate/Severe Traumatic Brain Injury. Olsen, Alexander; Babikian, Talin; Dennis, Emily L; Ellis-Blied, Monica U; Giza, Christopher; Marion, Sarah DeBoard; Mink, Richard; Johnson, Jeffrey; Babbitt, Christopher J; Thompson, Paul M; Asarnow, Robert F Journal of neurotrauma. 31469049 2020 Jan 15;
Practical Considerations for Data Collection and Management in Mobile Health Micro-randomized Trials. Seewald, Nicholas J; Smith, Shawna N; Lee, Andy Jinseok; Klasnja, Predrag; Murphy, Susan A Statistics in biosciences. 31462937 2019 Jul;
Genomic GPS: using genetic distance from individuals to public data for genomic analysis without disclosing personal genomes. Kim, Kunhee; Baik, Hyungryul; Jang, Chloe Soohyun; Roh, Jin Kyung; Eskin, Eleazer; Han, Buhm Genome biology 31455387 2019 08 27
Learning High-dimensional Directed Acyclic Graphs with Mixed Data-types. Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F Proceedings of machine learning research. 31453569 2019 Aug;
Inverse probability weighted Cox model in multi-site studies without sharing individual-level data. Shu, Di; Yoshida, Kazuki; Fireman, Bruce H; Toh, Sengwee Statistical methods in medical research. 31448681 2019 Aug 26;
The Association Between Familial Risk and Brain Abnormalities Is Disease Specific: An ENIGMA-Relatives Study of Schizophrenia and Bipolar Disorder. de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Aleman, André; Alpert, Kathryn I; Bearden, Carrie E; Bertolino, Alessandro; Bois, Catherine; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Frankland, Andrew; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; de Haan, Lieuwe; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hillegers, Manon H J; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krabbendam, Lydia; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Marsman, Jan-Bernard C; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Najt, Pablo; Neilson, Emma; Newport, Jason; van Os, Jim; Overs, Bronwyn; Ozerdem, Aysegul; Picchioni, Marco M; Richter, Anja; Roberts, Gloria; Aydogan, Aybala Saricicek; Schofield, Peter R; Simsek, Fatma; Soares, Jair C; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Walter, Henrik; Wang, Lei; Weinberger, Daniel R; Whalley, Heather C; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; van Erp, Theo G M; Turner, Jessica A; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E M Biological psychiatry. 31443932 2019 10 01;
Context-Aware Delivery of Ecological Momentary Assessment. Aminikhanghahi, Samaneh; Schmitter-Edgecombe, Maureen; Cook, Diane J IEEE journal of biomedical and health informatics 31443058 2020 04
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen; Snyder, Michael P; Baker, Mark S; Deutsch, Eric W Journal of proteome research. 31430157 2019 Dec 06;
APOE?4 Gene Dose and Sex Effects on Alzheimer's Disease MRI Biomarkers in Older Adults with Mild Cognitive Impairment. Hobel, Zachary; Isenberg, A Lisette; Raghupathy, Dhvani; Mack, Wendy; Pa, Judy; Alzheimer?s Disease Neuroimaging Initiative and the Australian Imaging Biomarkers and Lifestyle flagship study of ageing Journal of Alzheimer's disease : JAD. 31424388 2019;
Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis. Zheng, Zihao; Mergaert, Aisha M; Fahmy, Lauren M; Bawadekar, Mandar; Holmes, Caitlyn L; Ong, Irene M; Bridges, Alan J; Newton, Michael A; Shelef, Miriam A Arthritis & rheumatology (Hoboken, N.J.). 31397047 2019 Aug 08;
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types. Yu, K; Chen, B; Aran, D; Charalel, J; Yau, C; Wolf, D M; van 't Veer, L J; Butte, A J; Goldstein, T; Sirota, M Nature communications. 31395879 2019 Aug 08;
Architecture and usability of OntoKeeper, an ontology evaluation tool. Amith, Muhammad; Manion, Frank; Liang, Chen; Harris, Marcelline; Wang, Dennis; He, Yongqun; Tao, Cui BMC medical informatics and decision making. 31391056 2019 08 08;
Quantifying the impact of public omics data. Perez-Riverol, Yasset; Zorin, Andrey; Dass, Gaurhari; Vu, Manh-Tu; Xu, Pan; Glont, Mihai; Vizcaíno, Juan Antonio; Jarnuczak, Andrew F; Petryszak, Robert; Ping, Peipei; Hermjakob, Henning Nature communications. 31383865 2019 Aug 05;
Predicting kinase inhibitors using bioactivity matrix derived informer sets. Zhang, Huikun; Ericksen, Spencer S; Lee, Ching-Pei; Ananiev, Gene E; Wlodarchak, Nathan; Yu, Peng; Mitchell, Julie C; Gitter, Anthony; Wright, Stephen J; Hoffmann, F Michael; Wildman, Scott A; Newton, Michael A PLoS computational biology. 31381559 2019 08;
Sequence tube maps: making graph genomes intuitive to commuters. Beyer, Wolfgang; Novak, Adam M; Hickey, Glenn; Chan, Jeffrey; Tan, Vanessa; Paten, Benedict; Zerbino, Daniel R Bioinformatics (Oxford, England). 31368484 2019 Dec 15;
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. Sánchez, Luis Francisco Hernández; Burger, Bram; Horro, Carlos; Fabregat, Antonio; Johansson, Stefan; Njølstad, Pål Rasmus; Barsnes, Harald; Hermjakob, Henning; Vaudel, Marc GigaScience. 31363752 2019 08 01;
Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements. Tsueng, Ginger; Kumar, Arun; Nanis, Steven M; Su, Andrew I Human computation (Fairfax, Va.). 31363486 2019;
New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders. Evangelou, Evangelos; Gao, He; Chu, Congying; Ntritsos, Georgios; Blakeley, Paul; Butts, Andrew R; Pazoki, Raha; Suzuki, Hideaki; Koskeridis, Fotios; Yiorkas, Andrianos M; Karaman, Ibrahim; Elliott, Joshua; Luo, Qiang; Aeschbacher, Stefanie; Bartz, Traci M; Baumeister, Sebastian E; Braund, Peter S; Brown, Michael R; Brody, Jennifer A; Clarke, Toni-Kim; Dimou, Niki; Faul, Jessica D; Homuth, Georg; Jackson, Anne U; Kentistou, Katherine A; Joshi, Peter K; Lemaitre, Rozenn N; Lind, Penelope A; Lyytikäinen, Leo-Pekka; Mangino, Massimo; Milaneschi, Yuri; Nelson, Christopher P; Nolte, Ilja M; Perälä, Mia-Maria; Polasek, Ozren; Porteous, David; Ratliff, Scott M; Smith, Jennifer A; Stan?áková, Alena; Teumer, Alexander; Tuominen, Samuli; Thériault, Sébastien; Vangipurapu, Jagadish; Whitfield, John B; Wood, Alexis; Yao, Jie; Yu, Bing; Zhao, Wei; Arking, Dan E; Auvinen, Juha; Liu, Chunyu; Männikkö, Minna; Risch, Lorenz; Rotter, Jerome I; Snieder, Harold; Veijola, Juha; Blakemore, Alexandra I; Boehnke, Michael; Campbell, Harry; Conen, David; Eriksson, Johan G; Grabe, Hans J; Guo, Xiuqing; van der Harst, Pim; Hartman, Catharina A; Hayward, Caroline; Heath, Andrew C; Jarvelin, Marjo-Riitta; Kähönen, Mika; Kardia, Sharon L R; Kühne, Michael; Kuusisto, Johanna; Laakso, Markku; Lahti, Jari; Lehtimäki, Terho; McIntosh, Andrew M; Mohlke, Karen L; Morrison, Alanna C; Martin, Nicholas G; Oldehinkel, Albertine J; Penninx, Brenda W J H; Psaty, Bruce M; Raitakari, Olli T; Rudan, Igor; Samani, Nilesh J; Scott, Laura J; Spector, Tim D; Verweij, Niek; Weir, David R; Wilson, James F; Levy, Daniel; Tzoulaki, Ioanna; Bell, Jimmy D; Matthews, Paul M; Rothenfluh, Adrian; Desrivières, Sylvane; Schumann, Gunter; Elliott, Paul Nature human behaviour. 31358974 2019 09;
Altered white matter microstructure in 22q11.2 deletion syndrome: a multisite diffusion tensor imaging study. Villalón-Reina, Julio E; Martínez, Kenia; Qu, Xiaoping; Ching, Christopher R K; Nir, Talia M; Kothapalli, Deydeep; Corbin, Conor; Sun, Daqiang; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Emanuel, Beverly; McDonald-McGinn, Donna M; Vorstman, Jacob A S; Fiksinski, Ania M; Koops, Sanne; Ruparel, Kosha; Roalf, David; Gur, Raquel E; Eric Schmitt, J; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Doherty, Joanne L; Cunningham, Adam C; van den Bree, Marianne; Linden, David E J; Owen, Michael; Moss, Hayley; Kelly, Sinead; Donohoe, Gary; Murphy, Kieran C; Arango, Celso; Jahanshad, Neda; Thompson, Paul M; Bearden, Carrie E Molecular psychiatry. 31358905 2019 Jul 29;
ROBOT: A Tool for Automating Ontology Workflows. Jackson, Rebecca C; Balhoff, James P; Douglass, Eric; Harris, Nomi L; Mungall, Christopher J; Overton, James A BMC bioinformatics. 31357927 2019 Jul 29;
Temporal Poisson Square Root Graphical Models. Geng, Sinong; Kuang, Zhaobin; Peissig, Peggy; Page, David Proceedings of machine learning research. 31355361 2018 Jul;
Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases. O'Banion, Colin P; Vickerman, Brianna M; Haar, Lauren; Lawrence, David S Cell chemical biology. 31353320 2019 Oct 17;
No Alterations of Brain Structural Asymmetry in Major Depressive Disorder: An ENIGMA Consortium Analysis. de Kovel, Carolien G F; Aftanas, Lyubomir; Aleman, André; Alexander-Bloch, Aaron F; Baune, Bernhard T; Brack, Ivan; Bülow, Robin; Busatto Filho, Geraldo; Carballedo, Angela; Connolly, Colm G; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Dohm, Katharina; Erwin-Grabner, Tracy; Frodl, Thomas; Fu, Cynthia H Y; Hall, Geoffrey B; Glahn, David C; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans Jörgen; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Harris, Mathew A; Harrison, Ben J; Hatton, Sean N; Hickie, Ian B; Ho, Tiffany C; Jahanshad, Neda; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leehr, Elisabeth J; Li, Meng; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew M; McLellan, Quinn; Medland, Sarah E; Mueller, Bryon A; Nenadic, Igor; Osipov, Evgeny; Papmeyer, Martina; Portella, Maria J; Reneman, Liesbeth; Rosa, Pedro G P; Sacchet, Matthew D; Schnell, Knut; Schrantee, Anouk; Sim, Kang; Simulionyte, Egle; Sindermann, Lisa; Singh, Aditya; Stein, Dan J; Ubani, Benjamin N; Van der Wee, Nic J A; Van der Werff, Steven J A; Veer, Ilya M; Vives-Gilabert, Yolanda; Völzke, Henry; Walter, Henrik; Walter, Martin; Schreiner, Melinda Westlund; Whalley, Heather; Winter, Nils; Wittfeld, Katharina; Yang, Tony T; Yüksel, Dilara; Zaremba, Dario; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Francks, Clyde The American journal of psychiatry. 31352813 2019 12 01;
White Matter in Schizophrenia Treatment Resistance. Kochunov, Peter; Huang, Junchao; Chen, Song; Li, Yanli; Tan, Shuping; Fan, Fengmei; Feng, Wei; Wang, Yunhui; Rowland, Laura M; Savransky, Anya; Du, Xiaoming; Chiappelli, Joshua; Chen, Shuo; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Adhikari, Bhim; Sampath, Hemalatha; Cui, Yimin; Wang, Zhiren; Yang, Fude; Tan, Yunlong; Hong, L Elliot The American journal of psychiatry. 31352812 2019 10 01;
We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts? Wheeler, Nicole Thorax. 31331948 2019 Sep;
iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. Rojo, Constanza; Zhang, Qi; Kele?, Sündüz Genetic epidemiology. 31328826 2019 10;
Heavy drinking in adolescents is associated with change in brainstem microstructure and reward sensitivity. Galinowski, André; Miranda, Ruben; Lemaitre, Hervé; Artiges, Eric; Paillère Martinot, Marie-Laure; Filippi, Irina; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Stringaris, Argyris; Becker, Andreas; Isensee, Corinna; Struve, Maren; Fadai, Tahmine; Kappel, Viola; Goodman, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gallinat, Juergen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hohmann, Sarah; Jurk, Sarah; Millenet, Sabina; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Poustka, Luise; Quinlan, Erin Burke; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; IMAGEN Consortium Addiction biology. 31328396 2020 May;
Cannabis-Associated Psychotic-like Experiences Are Mediated by Developmental Changes in the Parahippocampal Gyrus. Yu, Tao; Jia, Tianye; Zhu, Liping; Desrivières, Sylvane; Macare, Christine; Bi, Yan; Bokde, Arun L W; Quinlan, Erin Burke; Heinz, Andreas; Ittermann, Bernd; Liu, ChuanXin; Ji, Lei; Banaschewski, Tobias; Ren, Decheng; Du, Li; Hou, Binyin; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Luo, Qiang; Chu, Congying; Paus, Tomas; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Smolka, Michael N; Vetter, Nora C; Mennigen, Eva; Lei, Cai; Walter, Henrik; Fröhner, Juliane H; Whelan, Robert; He, Guang; He, Lin; Schumann, Gunter; Robert, Gabriel; IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 31326579 2020 05
Fast Causal Inference with Non-Random Missingness by Test-Wise Deletion. Strobl, Eric V; Visweswaran, Shyam; Spirtes, Peter L International journal of data science and analytics. 31321289 2018 Aug;
Functional network connectivity impairments and core cognitive deficits in schizophrenia. Adhikari, Bhim M; Hong, L Elliot; Sampath, Hemalatha; Chiappelli, Joshua; Jahanshad, Neda; Thompson, Paul M; Rowland, Laura M; Calhoun, Vince D; Du, Xiaoming; Chen, Shuo; Kochunov, Peter Human brain mapping. 31313441 2019 11 01;
Irritability and brain volume in adolescents: cross-sectional and longitudinal associations. Dennis, Emily L; Humphreys, Kathryn L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H Social cognitive and affective neuroscience. 31309969 2019 07 31;
Weakly supervised classification of aortic valve malformations using unlabeled cardiac MRI sequences. Fries, Jason A; Varma, Paroma; Chen, Vincent S; Xiao, Ke; Tejeda, Heliodoro; Saha, Priyanka; Dunnmon, Jared; Chubb, Henry; Maskatia, Shiraz; Fiterau, Madalina; Delp, Scott; Ashley, Euan; Ré, Christopher; Priest, James R Nature communications. 31308376 2019 Jul 15;
Best practices for analyzing large-scale health data from wearables and smartphone apps. Hicks, Jennifer L; Althoff, Tim; Sosic, Rok; Kuhar, Peter; Bostjancic, Bojan; King, Abby C; Leskovec, Jure; Delp, Scott L NPJ digital medicine. 31304391 2019;
Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants. Cline, Melissa S; Babbi, Giulia; Bonache, Sandra; Cao, Yue; Casadio, Rita; de la Cruz, Xavier; Díez, Orland; Gutiérrez-Enríquez, Sara; Katsonis, Panagiotis; Lai, Carmen; Lichtarge, Olivier; Martelli, Pier L; Mishne, Gilad; Moles-Fernández, Alejandro; Montalban, Gemma; Mooney, Sean D; O'Conner, Robert; Ootes, Lars; Özkan, Selen; Padilla, Natalia; Pagel, Kymberleigh A; Pejaver, Vikas; Radivojac, Predrag; Riera, Casandra; Savojardo, Castrense; Shen, Yang; Sun, Yuanfei; Topper, Scott; Parsons, Michael T; Spurdle, Amanda B; Goldgar, David E; ENIGMA Consortium Human mutation. 31294896 2019 Sep;
Single Nucleotide Polymorphisms at a Distance from Aryl Hydrocarbon Receptor (AHR) Binding Sites Influence AHR Ligand-Dependent Gene Expression. Neavin, Drew R; Lee, Jeong-Heon; Liu, Duan; Ye, Zhenqing; Li, Hu; Wang, Liewei; Ordog, Tamas; Weinshilboum, Richard M Drug metabolism and disposition: the biological fate of chemicals. 31292129 2019 09;
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. Shteynberg, David D; Deutsch, Eric W; Campbell, David S; Hoopmann, Michael R; Kusebauch, Ulrike; Lee, Dave; Mendoza, Luis; Midha, Mukul Kumar; Sun, Zhi; Whetton, Anthony D; Moritz, Robert L Journal of proteome research. 31290668 2019 Jul 10;
Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. Cai, Chunhui; Cooper, Gregory F; Lu, Kevin N; Ma, Xiaojun; Xu, Shuping; Zhao, Zhenlong; Chen, Xueer; Xue, Yifan; Lee, Adrian V; Clark, Nathan; Chen, Vicky; Lu, Songjian; Chen, Lujia; Yu, Liyue; Hochheiser, Harry S; Jiang, Xia; Wang, Q Jane; Lu, Xinghua PLoS computational biology. 31276486 2019 07;
Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients. Bhattacharyya, Sudeepa; Ahmed, Ahmed T; Arnold, Matthias; Liu, Duan; Luo, Chunqiao; Zhu, Hongjie; Mahmoudiandehkordi, Siamak; Neavin, Drew; Louie, Gregory; Dunlop, Boadie W; Frye, Mark A; Wang, Liewei; Weinshilboum, Richard M; Krishnan, Ranga R; Rush, A John; Kaddurah-Daouk, Rima Translational psychiatry. 31273200 2019 Jul 04;
Reporting and connecting cell type names and gating definitions through ontologies. Overton, James A; Vita, Randi; Dunn, Patrick; Burel, Julie G; Bukhari, Syed Ahmad Chan; Cheung, Kei-Hoi; Kleinstein, Steven H; Diehl, Alexander D; Peters, Bjoern BMC bioinformatics 31272390 2019 Apr 25
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. He, Yongqun; Duncan, William D; Cooper, Daniel J; Hansen, Jens; Iyengar, Ravi; Ong, Edison; Walker, Kendal; Tibi, Omar; Smith, Sam; Serra, Lucas M; Zheng, Jie; Sarntivijai, Sirarat; Schürer, Stephan; O'Shea, K Sue; Diehl, Alexander D BMC bioinformatics. 31272389 2019 Apr 25;
The joint effect of aging and HIV infection on microstructure of white matter bundles. Kuhn, Taylor; Jin, Yan; Huang, Chao; Kim, Yeun; Nir, Talia M; Gullett, Joseph M; Jones, Jacob D; Sayegh, Phillip; Chung, Caroline; Dang, Bianca H; Singer, Elyse J; Shattuck, David W; Jahanshad, Neda; Bookheimer, Susan Y; Hinkin, Charles H; Zhu, Hongtu; Thompson, Paul M; Thames, April D Human brain mapping. 31271489 2019 10 15;
Altered Cortical Brain Structure and Increased Risk for Disease Seen Decades After Perinatal Exposure to Maternal Smoking: A Study of 9000 Adults in the UK Biobank. Salminen, Lauren E; Wilcox, Rand R; Zhu, Alyssa H; Riedel, Brandalyn C; Ching, Christopher R K; Rashid, Faisal; Thomopoulos, Sophia I; Saremi, Arvin; Harrison, Marc B; Ragothaman, Anjanibhargavi; Knight, Victoria; Boyle, Christina P; Medland, Sarah E; Thompson, Paul M; Jahanshad, Neda Cerebral cortex (New York, N.Y. : 1991). 31271414 2019 Jul 04;
Predicting development of adolescent drinking behaviour from whole brain structure at 14 years of age. Kühn, Simone; Mascharek, Anna; Banaschewski, Tobias; Bodke, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivieres, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomas; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Lindenberger, Ulman; Gallinat, Jürgen; IMAGEN Consortium eLife. 31262402 2019 Jul 02;
Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results. Martínez-Bartolomé, Salvador; Bamberger, Tom Casimir; Lavallée-Adam, Mathieu; McClatchy, Daniel B; Yates 3rd, John R Journal of proteome research. 31260318 2019 08 02;
Machine Learning Assisted Discovery of Novel Predictive Lab Tests Using Electronic Health Record Data. Kleiman, Ross; Kuusisto, Finn; Ross, Ian; Peissig, Peggy L; Stewart, Ron; Page, C David; Weiss, Jeremy AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 31259012 2019;
Privacy-Preserving Collaborative Prediction using Random Forests. Giacomelli, Irene; Jha, Somesh; Kleiman, Ross; Page, David; Yoon, Kyonghwan AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 31258977 2019;
A model for initiating research data management services at academic libraries. Read, Kevin B; Koos, Jessica; Miller, Rebekah S; Miller, Cathryn F; Phillips, Gesina A; Scheinfeld, Laurel; Surkis, Alisa Journal of the Medical Library Association : JMLA. 31258450 2019 Jul;
Cheminformatics-driven discovery of polymeric micelle formulations for poorly soluble drugs. Alves, Vinicius M; Hwang, Duhyeong; Muratov, Eugene; Sokolsky-Papkov, Marina; Varlamova, Ekaterina; Vinod, Natasha; Lim, Chaemin; Andrade, Carolina H; Tropsha, Alexander; Kabanov, Alexander Science advances. 31249867 2019 06;
Pathway-level information extractor (PLIER) for gene expression data. Mao, Weiguang; Zaslavsky, Elena; Hartmann, Boris M; Sealfon, Stuart C; Chikina, Maria Nature methods. 31249421 2019 07;
Augmenting subnetwork inference with information extracted from the scientific literature. Kiblawi, Sid; Chasman, Deborah; Henning, Amanda; Park, Eunju; Poon, Hoifung; Gould, Michael; Ahlquist, Paul; Craven, Mark PLoS computational biology. 31246951 2019 Jun;
Machine learning techniques for personalized breast cancer risk prediction: comparison with the BCRAT and BOADICEA models. Ming, Chang; Viassolo, Valeria; Probst-Hensch, Nicole; Chappuis, Pierre O; Dinov, Ivo D; Katapodi, Maria C Breast cancer research : BCR. 31221197 2019 06 20;
Review of Causal Discovery Methods Based on Graphical Models. Glymour, Clark; Zhang, Kun; Spirtes, Peter Frontiers in genetics. 31214249 2019;
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Martínez-Romero, Marcos; O'Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Hardi, Josef; Graybeal, John; Musen, Mark A Database : the journal of biological databases and curation. 31210270 2019 01 01;
Inferring causation from time series in Earth system sciences. Runge, Jakob; Bathiany, Sebastian; Bollt, Erik; Camps-Valls, Gustau; Coumou, Dim; Deyle, Ethan; Glymour, Clark; Kretschmer, Marlene; Mahecha, Miguel D; Muñoz-Marí, Jordi; van Nes, Egbert H; Peters, Jonas; Quax, Rick; Reichstein, Markus; Scheffer, Marten; Schölkopf, Bernhard; Spirtes, Peter; Sugihara, George; Sun, Jie; Zhang, Kun; Zscheischler, Jakob Nature communications. 31201306 2019 Jun 14;
Accelerated Stochastic Power Iteration. De Sa, Christopher; He, Bryan; Mitliagkas, Ioannis; Ré, Christopher; Xu, Peng Proceedings of machine learning research. 31187095 2018;
Age-based versus Risk-based Mammography Screening in Women 40-49 Years Old: A Cross-sectional Study. Burnside, Elizabeth S; Trentham-Dietz, Amy; Shafer, Christina M; Hampton, John M; Alagoz, Oguz; Cox, Jennifer R; Mischo, Eric; Schrager, Sarina B; Wilke, Lee G Radiology. 31184557 2019 Aug;
Quantifying performance of machine learning methods for neuroimaging data. Jollans, Lee; Boyle, Rory; Artiges, Eric; Banaschewski, Tobias; Desrivières, Sylvane; Grigis, Antoine; Martinot, Jean-Luc; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Whelan, Robert NeuroImage. 31173905 2019 Oct 01;
Rapid energy expenditure estimation for ankle assisted and inclined loaded walking. Slade, Patrick; Troutman, Rachel; Kochenderfer, Mykel J; Collins, Steven H; Delp, Scott L Journal of neuroengineering and rehabilitation. 31171003 2019 Jun 06;
De novo protein design by citizen scientists. Koepnick, Brian; Flatten, Jeff; Husain, Tamir; Ford, Alex; Silva, Daniel-Adriano; Bick, Matthew J; Bauer, Aaron; Liu, Gaohua; Ishida, Yojiro; Boykov, Alexander; Estep, Roger D; Kleinfelter, Susan; Nørgård-Solano, Toke; Wei, Linda; Players, Foldit; Montelione, Gaetano T; DiMaio, Frank; Popovi?, Zoran; Khatib, Firas; Cooper, Seth; Baker, David Nature. 31168091 2019 Jun;
Haplotype-aware diplotyping from noisy long reads. Ebler, Jana; Haukness, Marina; Pesout, Trevor; Marschall, Tobias; Paten, Benedict Genome biology. 31159868 2019 06 03;
Optogenetic perturbation of the biochemical pathways that control cell behavior. Haar, Lauren L; Lawrence, David S; Hughes, Robert M Methods in enzymology. 31155059 2019;
Multi-Site Meta-Analysis of Morphometry. Jahanshad, Neda; Faskowitz, Joshua; Roshchupkin, Gennady; Hibar, Derrek P; Gutman, Boris A; Tustison, Nicholas J; Adams, Hieab H H; Niessen, Wiro J; Vernooij, Meike W; Ikram, M Arfan; Zwiers, Marcel P; Vasquez, Alejandro Arias; Franke, Barbara; Kroll, Jennifer L; Mwangi, Benson; Soares, Jair C; Ing, Alex; Desrivieres, Sylvane; Schumann, Gunter; Hansell, Narelle K; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M IEEE/ACM transactions on computational biology and bioinformatics. 31135366 2019 Sep-Oct;
10Kin1day: A Bottom-Up Neuroimaging Initiative. van den Heuvel, Martijn P; Scholtens, Lianne H; van der Burgh, Hannelore K; Agosta, Federica; Alloza, Clara; Arango, Celso; Auyeung, Bonnie; Baron-Cohen, Simon; Basaia, Silvia; Benders, Manon J N L; Beyer, Frauke; Booij, Linda; Braun, Kees P J; Filho, Geraldo Busatto; Cahn, Wiepke; Cannon, Dara M; Chaim-Avancini, Tiffany M; Chan, Sandra S M; Chen, Eric Y H; Crespo-Facorro, Benedicto; Crone, Eveline A; Dannlowski, Udo; de Zwarte, Sonja M C; Dietsche, Bruno; Donohoe, Gary; Plessis, Stefan Du; Durston, Sarah; Díaz-Caneja, Covadonga M; Díaz-Zuluaga, Ana M; Emsley, Robin; Filippi, Massimo; Frodl, Thomas; Gorges, Martin; Graff, Beata; Grotegerd, Dominik; G?secki, Dariusz; Hall, Julie M; Holleran, Laurena; Holt, Rosemary; Hopman, Helene J; Jansen, Andreas; Janssen, Joost; Jodzio, Krzysztof; Jäncke, Lutz; Kaleda, Vasiliy G; Kassubek, Jan; Masouleh, Shahrzad Kharabian; Kircher, Tilo; Koevoets, Martijn G J C; Kostic, Vladimir S; Krug, Axel; Lawrie, Stephen M; Lebedeva, Irina S; Lee, Edwin H M; Lett, Tristram A; Lewis, Simon J G; Liem, Franziskus; Lombardo, Michael V; Lopez-Jaramillo, Carlos; Margulies, Daniel S; Markett, Sebastian; Marques, Paulo; Martínez-Zalacaín, Ignacio; McDonald, Colm; McIntosh, Andrew M; McPhilemy, Genevieve; Meinert, Susanne L; Menchón, José M; Montag, Christian; Moreira, Pedro S; Morgado, Pedro; Mothersill, David O; Mérillat, Susan; Müller, Hans-Peter; Nabulsi, Leila; Najt, Pablo; Narkiewicz, Krzysztof; Naumczyk, Patrycja; Oranje, Bob; Ortiz-Garcia de la Foz, Victor; Peper, Jiska S; Pineda, Julian A; Rasser, Paul E; Redlich, Ronny; Repple, Jonathan; Reuter, Martin; Rosa, Pedro G P; Ruigrok, Amber N V; Sabisz, Agnieszka; Schall, Ulrich; Seedat, Soraya; Serpa, Mauricio H; Skouras, Stavros; Soriano-Mas, Carles; Sousa, Nuno; Szurowska, Edyta; Tomyshev, Alexander S; Tordesillas-Gutierrez, Diana; Valk, Sofie L; van den Berg, Leonard H; van Erp, Theo G M; van Haren, Neeltje E M; van Leeuwen, Judith M C; Villringer, Arno; Vinkers, Christiaan H; Vollmar, Christian; Waller, Lea; Walter, Henrik; Whalley, Heather C; Witkowska, Marta; Witte, A Veronica; Zanetti, Marcus V; Zhang, Rui; de Lange, Siemon C Frontiers in neurology. 31133958 2019;
Exploring the Utility of Developer Exhaust. Zhang, Jian; Lam, Max; Wang, Stephanie; Varma, Paroma; Nardi, Luigi; Olukotun, Kunle; Ré, Christopher Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). 31131381 2018 Jun;
Representation Tradeoffs for Hyperbolic Embeddings. De Sa, Christopher; Gu, Albert; Ré, Christopher; Sala, Frederic Proceedings of machine learning research. 31131375 2018;
A two-pronged progress in structured dense matrixvector multiplication. De Sa, Christopher; Gu, Albert; Puttagunta, Rohan; Ré, Christopher; Rudra, Atri Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. 31130802 2018 Jan;
Learning Compressed Transforms with Low Displacement Rank. Thomas, Anna T; Gu, Albert; Dao, Tri; Rudra, Atri; Ré, Christopher Advances in neural information processing systems. 31130799 2018 Dec;
Training Classifiers with Natural Language Explanations. Hancock, Braden; Bringmann, Martin; Varma, Paroma; Liang, Percy; Wang, Stephanie; Ré, Christopher Proceedings of the conference. Association for Computational Linguistics. Meeting. 31130772 2018 Jul;
Design, construction, and validation of optogenetic proteins. O'Banion, Colin P; Goswami, Anwesha; Lawrence, David S Methods in enzymology. 31128778 2019;
The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services. Avesani, Paolo; McPherson, Brent; Hayashi, Soichi; Caiafa, Cesar F; Henschel, Robert; Garyfallidis, Eleftherios; Kitchell, Lindsey; Bullock, Daniel; Patterson, Andrew; Olivetti, Emanuele; Sporns, Olaf; Saykin, Andrew J; Wang, Lei; Dinov, Ivo; Hancock, David; Caron, Bradley; Qian, Yiming; Pestilli, Franco Scientific data. 31123325 2019 May 23;
Neural Correlates of Failed Inhibitory Control as an Early Marker of Disordered Eating in Adolescents. Bartholdy, Savani; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike; IMAGEN Consortium Biological psychiatry. 31122340 2019 06 01;
ChEA3: transcription factor enrichment analysis by orthogonal omics integration. Keenan, Alexandra B; Torre, Denis; Lachmann, Alexander; Leong, Ariel K; Wojciechowicz, Megan L; Utti, Vivian; Jagodnik, Kathleen M; Kropiwnicki, Eryk; Wang, Zichen; Ma'ayan, Avi Nucleic acids research. 31114921 2019 Jul 02;
Identifying the molecular and cellular signature of cardiac dilation following myocardial infarction. Lindsey, Merry L; Ma, Yonggang; Flynn, Elizabeth R; Winniford, Michael D; Hall, Michael E; DeLeon-Pennell, Kristine Y Biochimica et biophysica acta. Molecular basis of disease. 31109452 2019 Jul 01;
Automated Phrase Mining from Massive Text Corpora. Shang, Jingbo; Liu, Jialu; Jiang, Meng; Ren, Xiang; Voss, Clare R; Han, Jiawei IEEE transactions on knowledge and data engineering. 31105412 2018 Oct;
Exercise ameliorates deficits in neural microstructure in a Disc1 model of psychiatric illness. Barnett, Brian R; Anderson, Jacqueline M; Torres-Velázquez, Maribel; Yi, Sue Y; Rowley, Paul A; Yu, John-Paul J Magnetic resonance imaging. 31103832 2019 Sep;
Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data. Liu, Ke; Newbury, Patrick A; Glicksberg, Benjamin S; Zeng, William Z D; Paithankar, Shreya; Andrechek, Eran R; Chen, Bin Nature communications. 31092827 2019 05 15;
Interactive impact of childhood maltreatment, depression, and age on cortical brain structure: mega-analytic findings from a large multi-site cohort. Tozzi, Leonardo; Garczarek, Lisa; Janowitz, Deborah; Stein, Dan J; Wittfeld, Katharina; Dobrowolny, Henrik; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Bülow, Robin; Völzke, Henry; Klinger-König, Johanna; Schnell, Knut; Schoepf, Dieter; Grotegerd, Dominik; Opel, Nils; Dannlowski, Udo; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Kircher, Tilo; Jüksel, Dilara; Nenadić, Igor; Krug, Axel; Hahn, Tim; Steinsträter, Olaf; Redlich, Ronny; Zaremba, Dario; Zurowski, Bartosz; Fu, Cynthia H Y; Dima, Danai; Cole, James; Grabe, Hans J; Connolly, Colm G; Yang, Tony T; Ho, Tiffany C; LeWinn, Kaja Z; Li, Meng; Groenewold, Nynke A; Salminen, Lauren E; Walter, Martin; Simmons, Alan N; van Erp, Theo G M; Jahanshad, Neda; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Hibar, Derrek P; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Frodl, Thomas; ‘for the ENIGMA-MDD Consortium’ Psychological medicine 31084657 2020 04
Proteomics Standards Initiative Extended FASTA Format. Binz, Pierre-Alain; Shofstahl, Jim; Vizcaíno, Juan Antonio; Barsnes, Harald; Chalkley, Robert J; Menschaert, Gerben; Alpi, Emanuele; Clauser, Karl; Eng, Jimmy K; Lane, Lydie; Seymour, Sean L; Sánchez, Luis Francisco Hernández; Mayer, Gerhard; Eisenacher, Martin; Perez-Riverol, Yasset; Kapp, Eugene A; Mendoza, Luis; Baker, Peter R; Collins, Andrew; Van Den Bossche, Tim; Deutsch, Eric W Journal of proteome research. 31081335 2019 Jun 07;
The Effect of Cardiac Preservation Solutions on Heart Transplant Survival. Carter, Kristen T; Lirette, Seth T; Baran, David A; Creswell, Lawrence L; Panos, Anthony L; Cochran, Richard P; Copeland, Jack G; Copeland, Hannah The Journal of surgical research. 31078900 2019 10;
Low Smoking Exposure, the Adolescent Brain, and the Modulating Role of CHRNA5 Polymorphisms. Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Spechler, Philip A; Potter, Alexandra; Orr, Catherine; D'Alberto, Nicholas; Hudson, Kelsey E; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Higgins, Stephen T; Schumann, Gunter; Althoff, Robert R; Stein, Elliot A; Garavan, Hugh; IMAGEN Consortium Biological psychiatry. Cognitive neuroscience and neuroimaging. 31072760 2019 Jul;
modEnrichr: a suite of gene set enrichment analysis tools for model organisms. Kuleshov, Maxim V; Diaz, Jennifer E L; Flamholz, Zachary N; Keenan, Alexandra B; Lachmann, Alexander; Wojciechowicz, Megan L; Cagan, Ross L; Ma'ayan, Avi Nucleic acids research. 31069376 2019 Jul 02;
Behind Distribution Shift: Mining Driving Forces of Changes and Causal Arrows. Huang, Biwei; Zhang, Kun; Zhang, Jiji; Sanchez-Romero, Ruben; Glymour, Clark; Schölkopf, Bernhard Proceedings. IEEE International Conference on Data Mining. 31068766 2017 Nov;
Imputation Strategy for Reliable Regional MRI Morphological Measurements. Sta Cruz, Shaina; Dinov, Ivo D; Herting, Megan M; González-Zacarías, Clio; Kim, Hosung; Toga, Arthur W; Sepehrband, Farshid Neuroinformatics. 31054076 2019 May 04;
Amygdalar reactivity is associated with prefrontal cortical thickness in a large population-based sample of adolescents. Albaugh, Matthew D; Hudziak, James J; Orr, Catherine; Spechler, Philip A; Chaarani, Bader; Mackey, Scott; Lepage, Claude; Fonov, Vladimir; Rioux, Pierre; Evans, Alan C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh; IMAGEN Consortium PloS one. 31048888 2019;
Integrating data and knowledge to identify functional modules of genes: a multilayer approach. Liang, Lifan; Chen, Vicky; Zhu, Kunju; Fan, Xiaonan; Lu, Xinghua; Lu, Songjian BMC bioinformatics. 31046665 2019 May 02;
Reappraisal of variants previously linked with sudden infant death syndrome: results from three population-based cohorts. Paludan-Müller, Christian; Ghouse, Jonas; Vad, Oliver B; Herfelt, Cecilie B; Lundegaard, Pia; Ahlberg, Gustav; Schmitt, Nicole; Svendsen, Jesper H; Haunsø, Stig; Bundgaard, Henning; Hansen, Torben; Kanters, Jørgen K; Olesen, Morten S European journal of human genetics : EJHG. 31043699 2019 Sep;
A two-tiered curriculum to improve data management practices for researchers. Read, Kevin B; Larson, Catherine; Gillespie, Colleen; Oh, So Young; Surkis, Alisa PloS one. 31042776 2019;
Preference-Sensitive Management of Post-Mammography Decisions in Breast Cancer Diagnosis. Ayvaci, Mehmet Ulvi Saygi; Alagoz, Oguzhan; Ahsen, Mehmet Eren; Burnside, Elizabeth S Production and operations management. 31031555 2018 Dec;
Mapping abnormal subcortical neurodevelopment in a cohort of Thai children with HIV. Wade, Benjamin S C; Valcour, Victor G; Puthanakit, Thanyawee; Saremi, Arvin; Gutman, Boris A; Nir, Talia M; Watson, Christa; Aurpibul, Linda; Kosalaraksa, Pope; Ounchanum, Pradthana; Kerr, Stephen; Dumrongpisutikul, Netsiri; Visrutaratna, Pannee; Srinakarin, Jiraporn; Pothisri, Monthana; Narr, Katherine L; Thompson, Paul M; Ananworanich, Jintanat; Paul, Robert H; Jahanshad, Neda; PREDICT and Resilience Study Groups NeuroImage. Clinical. 31029050 2019 Apr 02;
Machine learning for phenotyping opioid overdose events. Badger, Jonathan; LaRose, Eric; Mayer, John; Bashiri, Fereshteh; Page, David; Peissig, Peggy Journal of biomedical informatics. 31028874 2019 Jun;
Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures. Cooper, Daniel J; Schürer, Stephan Molecules (Basel, Switzerland). 31018579 2019 Apr 23;
Artificial intelligence in healthcare. Yu, Kun-Hsing; Beam, Andrew L; Kohane, Isaac S Nature biomedical engineering. 31015651 2018 10;
Brain Imaging of the Cortex in ADHD: A Coordinated Analysis of Large-Scale Clinical and Population-Based Samples. Hoogman, Martine; Muetzel, Ryan; Guimaraes, Joao P; Shumskaya, Elena; Mennes, Maarten; Zwiers, Marcel P; Jahanshad, Neda; Sudre, Gustavo; Wolfers, Thomas; Earl, Eric A; Soliva Vila, Juan Carlos; Vives-Gilabert, Yolanda; Khadka, Sabin; Novotny, Stephanie E; Hartman, Catharina A; Heslenfeld, Dirk J; Schweren, Lizanne J S; Ambrosino, Sara; Oranje, Bob; de Zeeuw, Patrick; Chaim-Avancini, Tiffany M; Rosa, Pedro G P; Zanetti, Marcus V; Malpas, Charles B; Kohls, Gregor; von Polier, Georg G; Seitz, Jochen; Biederman, Joseph; Doyle, Alysa E; Dale, Anders M; van Erp, Theo G M; Epstein, Jeffery N; Jernigan, Terry L; Baur-Streubel, Ramona; Ziegler, Georg C; Zierhut, Kathrin C; Schrantee, Anouk; Høvik, Marie F; Lundervold, Astri J; Kelly, Clare; McCarthy, Hazel; Skokauskas, Norbert; O'Gorman Tuura, Ruth L; Calvo, Anna; Lera-Miguel, Sara; Nicolau, Rosa; Chantiluke, Kaylita C; Christakou, Anastasia; Vance, Alasdair; Cercignani, Mara; Gabel, Matt C; Asherson, Philip; Baumeister, Sarah; Brandeis, Daniel; Hohmann, Sarah; Bramati, Ivanei E; Tovar-Moll, Fernanda; Fallgatter, Andreas J; Kardatzki, Bernd; Schwarz, Lena; Anikin, Anatoly; Baranov, Alexandr; Gogberashvili, Tinatin; Kapilushniy, Dmitry; Solovieva, Anastasia; El Marroun, Hanan; White, Tonya; Karkashadze, Georgii; Namazova-Baranova, Leyla; Ethofer, Thomas; Mattos, Paulo; Banaschewski, Tobias; Coghill, David; Plessen, Kerstin J; Kuntsi, Jonna; Mehta, Mitul A; Paloyelis, Yannis; Harrison, Neil A; Bellgrove, Mark A; Silk, Tim J; Cubillo, Ana I; Rubia, Katya; Lazaro, Luisa; Brem, Silvia; Walitza, Susanne; Frodl, Thomas; Zentis, Mariam; Castellanos, Francisco X; Yoncheva, Yuliya N; Haavik, Jan; Reneman, Liesbeth; Conzelmann, Annette; Lesch, Klaus-Peter; Pauli, Paul; Reif, Andreas; Tamm, Leanne; Konrad, Kerstin; Oberwelland Weiss, Eileen; Busatto, Geraldo F; Louza, Mario R; Durston, Sarah; Hoekstra, Pieter J; Oosterlaan, Jaap; Stevens, Michael C; Ramos-Quiroga, J Antoni; Vilarroya, Oscar; Fair, Damien A; Nigg, Joel T; Thompson, Paul M; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Tiemeier, Henning; Bralten, Janita; Franke, Barbara The American journal of psychiatry. 31014101 2019 Jul 01;
Automated Debugging in Data-Intensive Scalable Computing. Gulzar, Muhammad Ali; Interlandi, Matteo; Han, Xueyuan; Li, Mingda; Condie, Tyson; Kim, Miryung Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). 31008457 2017 Sep;
Adding data provenance support to Apache Spark. Interlandi, Matteo; Ekmekji, Ari; Shah, Kshitij; Gulzar, Muhammad Ali; Tetali, Sai Deep; Kim, Miryung; Millstein, Todd; Condie, Tyson The VLDB journal : very large data bases : a publication of the VLDB Endowment. 31007500 2018 Oct;
Neuroimaging Evidence for Right Orbitofrontal Cortex Differences in Adolescents With Emotional and Behavioral Dysregulation. Spechler, Philip A; Chaarani, Bader; Orr, Catherine; Mackey, Scott; Higgins, Stephen T; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Althoff, Robert R; IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry. 31004740 2019 11;
Deep Learning Benchmarks on L1000 Gene Expression Data. McDermott, Matthew; Wang, Jennifer; Zhao, Wen Ning; Sheridan, Steven D; Szolovits, Peter; Kohane, Isaac; Haggarty, Stephen J; Perlis, Roy H IEEE/ACM transactions on computational biology and bioinformatics. 30990190 2019 Apr 11;
An average-case sublinear forward algorithm for the haploid Li and Stephens model. Rosen, Yohei M; Paten, Benedict J Algorithms for molecular biology : AMB. 30988694 2019;
Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms. Can, Anil; Lai, Pui Man Rosalind; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose Scientific reports. 30988354 2019 Apr 15;
ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets. Pullman, Benjamin S; Wertz, Julie; Carver, Jeremy; Bandeira, Nuno Journal of proteome research. 30985146 2018 12 07;
Assessing the value of a censored surrogate outcome. Parast, Layla; Tian, Lu; Cai, Tianxi Lifetime data analysis. 30980316 2019 Apr 12;
Predictive Big Data Analytics using the UK Biobank Data. Zhou, Yiwang; Zhao, Lu; Zhou, Nina; Zhao, Yi; Marino, Simeone; Wang, Tuo; Sun, Hanbo; Toga, Arthur W; Dinov, Ivo D Scientific reports. 30979917 2019 Apr 12;
Reproducible big data science: A case study in continuous FAIRness. Madduri, Ravi; Chard, Kyle; D'Arcy, Mike; Jung, Segun C; Rodriguez, Alexis; Sulakhe, Dinanath; Deutsch, Eric; Funk, Cory; Heavner, Ben; Richards, Matthew; Shannon, Paul; Glusman, Gustavo; Price, Nathan; Kesselman, Carl; Foster, Ian PloS one. 30973881 2019;
Modeling Dynamic Missingness of Implicit Feedback for Recommendation. Wang, Menghan; Gong, Mingming; Zheng, Xiaolin; Zhang, Kun Advances in neural information processing systems. 30971864 2018 Dec;
Multi-domain Causal Structure Learning in Linear Systems. Ghassami, AmirEmad; Kiyavash, Negar; Huang, Biwei; Zhang, Kun Advances in neural information processing systems. 30971863 2018 Dec;
A data citation roadmap for scholarly data repositories. Fenner, Martin; Crosas, Mercè; Grethe, Jeffrey S; Kennedy, David; Hermjakob, Henning; Rocca-Serra, Phillippe; Durand, Gustavo; Berjon, Robin; Karcher, Sebastian; Martone, Maryann; Clark, Tim Scientific data. 30971690 2019 04 10;
HDDA: DataSifter: statistical obfuscation of electronic health records and other sensitive datasets. Marino, Simeone; Zhou, Nina; Zhao, Yi; Wang, Lu; Wu, Qiucheng; Dinov, Ivo D Journal of statistical computation and simulation. 30962669 2018;
Causal Discovery from Discrete Data using Hidden Compact Representation. Cai, Ruichu; Qiao, Jie; Zhang, Kun; Zhang, Zhenjie; Hao, Zhifeng Advances in neural information processing systems. 30956519 2018 Dec;
Unveiling the Kinomes of Leishmania infantum and L. braziliensis Empowers the Discovery of New Kinase Targets and Antileishmanial Compounds. Borba, Joyce V B; Silva, Arthur C; Ramos, Pablo I P; Grazzia, Nathalia; Miguel, Danilo C; Muratov, Eugene N; Furnham, Nicholas; Andrade, Carolina H Computational and structural biotechnology journal. 30949306 2019;
Learning one's genetic risk changes physiology independent of actual genetic risk. Turnwald, Bradley P; Goyer, J Parker; Boles, Danielle Z; Silder, Amy; Delp, Scott L; Crum, Alia J Nature human behaviour. 30932047 2019 Jan;
Snorkel MeTaL: Weak Supervision for Multi-Task Learning. Ratner, Alex; Hancock, Braden; Dunnmon, Jared; Goldman, Roger; Ré, Christopher Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). 30931438 2018 Jun;
Learning the Network Structure of Heterogeneous Data via Pairwise Exponential Markov Random Fields. Park, Youngsuk; Hallac, David; Boyd, Stephen; Leskovec, Jure Proceedings of machine learning research. 30931433 2017 Apr;
Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. Kochunov, Peter; Patel, Binish; Ganjgahi, Habib; Donohue, Brian; Ryan, Meghann; Hong, Elliot L; Chen, Xu; Adhikari, Bhim; Jahanshad, Neda; Thompson, Paul M; Van't Ent, Dennis; den Braber, Anouk; de Geus, Eco J C; Brouwer, Rachel M; Boomsma, Dorret I; Hulshoff Pol, Hilleke E; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Nichols, Thomas E Frontiers in neuroinformatics. 30914942 2019;
Standardizing Analytic Methods and Reporting in Activity Monitor Validation Studies. Welk, Gregory J; Bai, Yang; Lee, Jung-Min; Godino, Job; Saint-Maurice, Pedro F; Carr, Lucas Medicine and science in sports and exercise. 30913159 2019 08;
Anticipating innovations in structural biology. Berman, Helen M; Lawson, Catherine L; Vallat, Brinda; Gabanyi, Margaret J Quarterly reviews of biophysics. 30912485 2018 01;
Mechanical activation of noncoding-RNA-mediated regulation of disease-associated phenotypes in human cardiomyocytes. Kumar, Aditya; Thomas, Stephanie K; Wong, Kirsten C; Lo Sardo, Valentina; Cheah, Daniel S; Hou, Yang-Hsun; Placone, Jesse K; Tenerelli, Kevin P; Ferguson, William C; Torkamani, Ali; Topol, Eric J; Baldwin, Kristin K; Engler, Adam J Nature biomedical engineering. 30911429 2019 Feb;
Toward Sensor-Based Sleep Monitoring with Electrodermal Activity Measures. Romine, William; Banerjee, Tanvi; Goodman, Garrett Sensors (Basel, Switzerland) 30909430 2019 Mar 22
Comparison of blockchain platforms: a systematic review and healthcare examples. Kuo, Tsung-Ting; Zavaleta Rojas, Hugo; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA. 30907419 2019 05 01;
Creating a digital memory notebook application for individuals with mild cognitive impairment to support everyday functioning. Raghunath, Nisha; Dahmen, Jessamyn; Brown, Katelyn; Cook, Diane; Schmitter-Edgecombe, Maureen Disability and rehabilitation. Assistive technology 30907223 2020 05
iSurvive: An Interpretable, Event-time Prediction Model for mHealth. Dempsey, Walter H; Moreno, Alexander; Scott, Christy K; Dennis, Michael L; Gustafson, David H; Murphy, Susan A; Rehg, James M Proceedings of machine learning research. 30906932 2017;
ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data. Manjunath, Mohith; Zhang, Yi; Yeo, Steve H; Sobh, Omar; Russell, Nathan; Followell, Christian; Bushell, Colleen; Ravaioli, Umberto; Song, Jun S PeerJ. Computer science. 30906871 2018;
Concordance of genetic variation that increases risk for tourette syndrome and that influences its underlying neurocircuitry. Mufford, Mary; Cheung, Josh; Jahanshad, Neda; van der Merwe, Celia; Ding, Linda; Groenewold, Nynke; Koen, Nastassja; Chimusa, Emile R; Dalvie, Shareefa; Ramesar, Raj; Knowles, James A; Lochner, Christine; Hibar, Derrek P; Paschou, Peristera; van den Heuvel, Odile A; Medland, Sarah E; Scharf, Jeremiah M; Mathews, Carol A; Thompson, Paul M; Stein, Dan J; Psychiatric Genomics Consortium - Tourette Syndrome working group Translational psychiatry. 30902966 2019 Mar 22;
The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia: design, results and future prospects. Middeldorp, Christel M; Felix, Janine F; Mahajan, Anubha; EArly Genetics Lifecourse Epidemiology (EAGLE) consortium; Early Growth Genetics (EGG) consortium; McCarthy, Mark I European journal of epidemiology. 30887376 2019 Mar;
Learning the Structure of Generative Models without Labeled Data. Bach, Stephen H; He, Bryan; Ratner, Alexander; Ré, Christopher Proceedings of machine learning research. 30882087 2017 Aug;
ShortFuse: Biomedical Time Series Representations in the Presence of Structured Information. Fiterau, Madalina; Bhooshan, Suvrat; Fries, Jason; Bournhonesque, Charles; Hicks, Jennifer; Halilaj, Eni; Ré, Christopher; Delp, Scott Proceedings of machine learning research. 30882086 2017 Aug;
Ancestral characterization of 1018 cancer cell lines highlights disparities and reveals gene expression and mutational differences. Kessler, Michael D; Bateman, Nicholas W; Conrads, Thomas P; Maxwell, George L; Dunning Hotopp, Julie C; O'Connor, Timothy D Cancer. 30865299 2019 Mar 13;
When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data. Gürsoy, Gamze; Harmanci, Arif; Tang, Haixu; Ayday, Erman; Brenner, Steven E Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 30864339 2019
AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets. Hu, Zhiyue Tom; Ye, Yuting; Newbury, Patrick A; Huang, Haiyan; Chen, Bin Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 30864327 2019;
Mapping causal pathways from genetics to neuropsychiatric disorders using genome-wide imaging genetics: Current status and future directions. Le, Brandon D; Stein, Jason L Psychiatry and clinical neurosciences. 30864184 2019 Jul;
Risk Factors for Development of Carbapenem Resistance Among Gram-Negative Rods. Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A Open forum infectious diseases. 30863785 2019 Mar;
SynSys: A Synthetic Data Generation System for Healthcare Applications. Dahmen, Jessamyn; Cook, Diane Sensors (Basel, Switzerland). 30857130 2019 Mar 08;
Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications. Sigdel, Dibakar; Kyi, Vincent; Zhang, Aiden; Setty, Shaun P; Liem, David A; Shi, Yu; Wang, Xuan; Shen, Jiaming; Wang, Wei; Han, JiaWei; Ping, Peipei Journal of visualized experiments : JoVE. 30855564 2019 02 23;
Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. Wang, Wenhao; Chen, Guoxing; Pan, Xiaorui; Zhang, Yinqian; Wang, XiaoFeng; Bindschaedler, Vincent; Tang, Haixu; Gunter, Carl A Conference on Computer and Communications Security : proceedings of the ... conference on computer and communications security. ACM Conference on Computer and Communications Security. 30853868 2017 Oct-Nov;
Unsupervised classification of multi-omics data during cardiac remodeling using deep learning. Chung, Neo Christopher; Mirza, Bilal; Choi, Howard; Wang, Jie; Wang, Ding; Ping, Peipei; Wang, Wei Methods (San Diego, Calif.). 30853547 2019 Mar 07;
Leveraging Big Data to Transform Drug Discovery. Glicksberg, Benjamin S; Li, Li; Chen, Rong; Dudley, Joel; Chen, Bin Methods in molecular biology (Clifton, N.J.). 30848458 2019;
How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM). Küçük McGinty, Hande; Visser, Ubbo; Schürer, Stephan Methods in molecular biology (Clifton, N.J.). 30848456 2019;
Resting-state brain information flow predicts cognitive flexibility in humans. Chén, Oliver Y; Cao, Hengyi; Reinen, Jenna M; Qian, Tianchen; Gou, Jiangtao; Phan, Huy; De Vos, Maarten; Cannon, Tyrone D Scientific reports. 30846746 2019 03 07;
Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon E Current biology : CB. 30836076 2019 Mar 04;
Federated discovery and sharing of genomic data using Beacons. Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena Nature biotechnology. 30833764 2019 03;
Distributed learning from multiple EHR databases: Contextual embedding models for medical events. Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, Qi Journal of biomedical informatics. 30825539 2019 Apr;
Enhancing safe routes to school programs through community-engaged citizen science: two pilot investigations in lower density areas of Santa Clara County, California, USA. Rodriguez, Nicole M; Arce, Alisa; Kawaguchi, Alice; Hua, Jenna; Broderick, Bonnie; Winter, Sandra J; King, Abby C BMC public health. 30823917 2019 Mar 01;
A Probabilistic Model to Support Radiologists' Classification Decisions in Mammography Practice. Zeng, Jiaming; Gimenez, Francisco; Burnside, Elizabeth S; Rubin, Daniel L; Shachter, Ross Medical decision making : an international journal of the Society for Medical Decision Making. 30819048 2019 04;
Genetic Markers of ADHD-Related Variations in Intracranial Volume. Klein, Marieke; Walters, Raymond K; Demontis, Ditte; Stein, Jason L; Hibar, Derrek P; Adams, Hieab H; Bralten, Janita; Roth Mota, Nina; Schachar, Russell; Sonuga-Barke, Edmund; Mattheisen, Manuel; Neale, Benjamin M; Thompson, Paul M; Medland, Sarah E; Børglum, Anders D; Faraone, Stephen V; Arias-Vasquez, Alejandro; Franke, Barbara The American journal of psychiatry. 30818988 2019 03 01;
Improving breast cancer risk prediction by using demographic risk factors, abnormality features on mammograms and genetic variants. Feld, Shara I; Woo, Kaitlin M; Alexandridis, Roxana; Wu, Yirong; Liu, Jie; Peissig, Peggy; Onitilo, Adedayo A; Cox, Jennifer; Page, C David; Burnside, Elizabeth S AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815167 2018;
Privacy-preserving biomedical data dissemination via a hybrid approach. Jiang, Yichen; Wang, Chenghong; Wu, Zhixuan; Du, Xin; Wang, Shuang AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815160 2018;
Automated Population of an i2b2 Clinical Data Warehouse using FHIR. Solbrig, Harold R; Hong, Na; Murphy, Shawn N; Jiang, Guoqian AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815141 2018;
Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP. Hong, Na; Wen, Andrew; Mojarad, Majid Rastegar; Sohn, Sunghwan; Liu, Hongfang; Jiang, Guoqian AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815098 2018;
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0). Mi, Huaiyu; Muruganujan, Anushya; Huang, Xiaosong; Ebert, Dustin; Mills, Caitlin; Guo, Xinyu; Thomas, Paul D Nature protocols. 30804569 2019 03;
Pubertal maturation and sex effects on the default-mode network connectivity implicated in mood dysregulation. Ernst, Monique; Benson, Brenda; Artiges, Eric; Gorka, Adam X; Lemaitre, Herve; Lago, Tiffany; Miranda, Ruben; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Translational psychiatry. 30804326 2019 Feb 25;
Just-in-Time but Not Too Much: Determining Treatment Timing in Mobile Health. Liao, Peng; Dempsey, Walter; Sarker, Hillol; Hossain, Syed Monowar; Al'absi, Mustafa; Klasnja, Predrag; Murphy, Susan Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. 30801052 2018 Dec;
A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards: From Sequencer to Electronic Health Record. Campbell, Walter S; Carter, Alexis B; Cushman-Vokoun, Allison M; Greiner, Timothy C; Dash, Rajesh C; Routbort, Mark; de Baca, Monica E; Campbell, James R The Journal of molecular diagnostics : JMD. 30797065 2019 Feb 20;
Estimating feedforward and feedback effective connections from fMRI time series: Assessments of statistical methods. Sanchez-Romero, Ruben; Ramsey, Joseph D; Zhang, Kun; Glymour, Madelyn R K; Huang, Biwei; Glymour, Clark Network neuroscience (Cambridge, Mass.). 30793083 2019;
Wearable Sleep Technology in Clinical and Research Settings. DE Zambotti, Massimiliano; Cellini, Nicola; Goldstone, Aimée; Colrain, Ian M; Baker, Fiona C Medicine and science in sports and exercise. 30789439 2019 07;
Crowdsourcing to delineate skin affected by chronic graft-vs-host disease. Tkaczyk, Eric R; Coco, Joseph R; Wang, Jianing; Chen, Fuyao; Ye, Cheng; Jagasia, Madan H; Dawant, Benoit M; Fabbri, Daniel Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI). 30786065 2019 Jul;
The variable quality of metadata about biological samples used in biomedical experiments. Gonçalves, Rafael S; Musen, Mark A Scientific data. 30778255 2019 Feb 19;
Racial Differences in Maintaining Optimal Health Behaviors Into Middle Age. Booth 3rd, John N; Allen, Norrina B; Calhoun, David; Carson, April P; Deng, Luqin; Goff Jr, David C; Redden, David T; Reis, Jared P; Shimbo, Daichi; Shikany, James M; Sidney, Stephen; Spring, Bonnie; Lewis, Cora E; Muntner, Paul American journal of preventive medicine. 30777156 2019 Mar;
Instance-Specific Bayesian Network Structure Learning. Jabbari, Fattaneh; Visweswaran, Shyam; Cooper, Gregory F Proceedings of machine learning research. 30775723 2018 Sep;
An Integrated Analysis of Neural Network Correlates of Categorical and Dimensional Models of Attention-Deficit/Hyperactivity Disorder. Pruim, Raimon H R; Beckmann, Christian F; Oldehinkel, Marianne; Oosterlaan, Jaap; Heslenfeld, Dirk; Hartman, Catharina A; Hoekstra, Pieter J; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Mennes, Maarten Biological psychiatry. Cognitive neuroscience and neuroimaging. 30773473 2019 05;
Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders. Pearl, Jocelynn R; Colantuoni, Carlo; Bergey, Dani E; Funk, Cory C; Shannon, Paul; Basu, Bijoya; Casella, Alex M; Oshone, Rediet T; Hood, Leroy; Price, Nathan D; Ament, Seth A Cell systems. 30772379 2019 02 27;
Progressive brain atrophy in chronically infected and treated HIV+ individuals. Nir, Talia M; Jahanshad, Neda; Ching, Christopher R K; Cohen, Ronald A; Harezlak, Jaroslaw; Schifitto, Giovanni; Lam, Hei Y; Hua, Xue; Zhong, Jianhui; Zhu, Tong; Taylor, Michael J; Campbell, Thomas B; Daar, Eric S; Singer, Elyse J; Alger, Jeffry R; Thomps Journal of neurovirology. 30767174 2019 Feb 14;
Evolution of resilience in protein interactomes across the tree of life. Zitnik, Marinka; Sosi?, Rok; Feldman, Marcus W; Leskovec, Jure Proceedings of the National Academy of Sciences of the United States of America. 30765515 2019 Mar 05;
Hyperbolic Wasserstein Distance for Shape Indexing. Shi, Jie; Wang, Yalin IEEE transactions on pattern analysis and machine intelligence. 30763239 2019 Feb 08;
Using Twitter to Detect Psychological Characteristics of Self-Identified Persons With Autism Spectrum Disorder: A Feasibility Study. Hswen, Yulin; Gopaluni, Anuraag; Brownstein, John S; Hawkins, Jared B JMIR mHealth and uHealth 30747718 2019 Feb 12
DPPred: An Effective Prediction Framework with Concise Discriminative Patterns. Shang, Jingbo; Jiang, Meng; Tong, Wenzhu; Xiao, Jinfeng; Peng, Jian; Han, Jiawei; Pooled Resource Open-Access ALS Clinical Trials Consortium* IEEE transactions on knowledge and data engineering. 30745791 2018 Jul;
Sex-specific deficits in neurite density and white matter integrity are associated with targeted disruption of exon 2 of the Disc1 gene in the rat. Barnett, Brian R; Torres-Velázquez, Maribel; Yi, Sue Y; Rowley, Paul A; Sawin, Emily A; Rubinstein, C Dustin; Krentz, Kathleen; Anderson, Jacqueline M; Bakshi, Vaishali P; Yu, John-Paul J Translational psychiatry 30745562 2019 Feb 11
Feasibility of using social media to monitor outdoor air pollution in London, England. Hswen, Yulin; Qin, Qiuyuan; Brownstein, John S; Hawkins, Jared B Preventive medicine. 30742873 2019 04;
Feature extraction for phenotyping from semantic and knowledge resources. Ning, Wenxin; Chan, Stephanie; Beam, Andrew; Yu, Ming; Geva, Alon; Liao, Katherine; Mullen, Mary; Mandl, Kenneth D; Kohane, Isaac; Cai, Tianxi; Yu, Sheng Journal of biomedical informatics. 30738949 2019 Mar;
ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model. Yu, Yue; Ruddy, Kathryn J; Hong, Na; Tsuji, Shintaro; Wen, Andrew; Shah, Nilay D; Jiang, Guoqian Journal of biomedical informatics. 30738946 2019 Mar;
Objective risk stratification of prostate cancer using machine learning and radiomics applied to multiparametric magnetic resonance images. Varghese, Bino; Chen, Frank; Hwang, Darryl; Palmer, Suzanne L; De Castro Abreu, Andre Luis; Ukimura, Osamu; Aron, Monish; Aron, Manju; Gill, Inderbir; Duddalwar, Vinay; Pandey, Gaurav Scientific reports. 30733585 2019 Feb 07;
Glycoproteomic Profiling Provides Candidate Myocardial Infarction Predictors of Later Progression to Heart Failure. Deleon-Pennell, Kristine Y; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L ACS omega. 30729226 2019 Jan 31;
Predicting opioid dependence from electronic health records with machine learning. Ellis, Randall J; Wang, Zichen; Genes, Nicholas; Ma'ayan, Avi BioData mining. 30728857 2019;
The Cortical Neuroimmune Regulator TANK Affects Emotional Processing and Enhances Alcohol Drinking: A Translational Study. Müller, Christian P; Chu, Congying; Qin, Liya; Liu, Chunyu; Xu, Bing; Gao, He; Ruggeri, Barbara; Hieber, Saskia; Schneider, Julia; Jia, Tianye; Tay, Nicole; Akira, Shizuo; Satoh, Takashi; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Bakalkin, Georgy; Liu, Yun; Desrivières, Sylvane; Elliott, Paul; Eulenburg, Volker; Levy, Daniel; Crews, Fulton; Schumann, Gunter Cerebral cortex (New York, N.Y. : 1991). 30721969 2019 04 01;
Adaptive Identification of Cortical and Subcortical Imaging Markers of Early Life Stress and Posttraumatic Stress Disorder. Salminen, Lauren E; Morey, Rajendra A; Riedel, Brandalyn C; Jahanshad, Neda; Dennis, Emily L; Thompson, Paul M Journal of neuroimaging : official journal of the American Society of Neuroimaging. 30714246 2019 Feb 03;
Selecting precise reference normal tissue samples for cancer research using a deep learning approach. Zeng, William Z D; Glicksberg, Benjamin S; Li, Yangyan; Chen, Bin BMC medical genomics. 30704474 2019 Jan 31;
Automatic real-time gait event detection in children using deep neural networks. Kidzi?ski, ?ukasz; Delp, Scott; Schwartz, Michael PloS one. 30703141 2019;
An Acute Randomized Controlled Trial of Noninvasive Peripheral Nerve Stimulation in Essential Tremor. Pahwa, Rajesh; Dhall, Rohit; Ostrem, Jill; Gwinn, Ryder; Lyons, Kelly; Ro, Susie; Dietiker, Cameron; Luthra, Nijee; Chidester, Paula; Hamner, Samuel; Ross, Erika; Delp, Scott Neuromodulation : journal of the International Neuromodulation Society. 30701655 2019 Jul;
Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD. Chen, Guocai; Jia, Yuxi; Zhu, Lisha; Li, Ping; Zhang, Lin; Tao, Cui; Jim Zheng, W BMC medical informatics and decision making. 30700303 2019 Jan 31;
Concordance of genetic variation that increases risk for anxiety disorders and posttraumatic stress disorders and that influences their underlying neurocircuitry. van der Merwe, Celia; Jahanshad, Neda; Cheung, Josh W; Mufford, Mary; Groenewold, Nynke A; Koen, Nastassja; Ramesar, Rajkumar; Dalvie, Shareefa; ENIGMA Consortium PGC-PTSD; Knowles, James A; Hibar, Derrek P; Nievergelt, Caroline M; Koenen, Karestan C; Liberzon, Israel; Ressler, Kerry J; Medland, Sarah E; Morey, Rajendra A; Thompson, Paul M; Stein, Dan J Journal of affective disorders. 30699873 2019 02 15;
Machine Learning and Integrative Analysis of Biomedical Big Data. Mirza, Bilal; Wang, Wei; Wang, Jie; Choi, Howard; Chung, Neo Christopher; Ping, Peipei Genes. 30696086 2019 01 28;
Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data. Grossman, Robert L Trends in genetics : TIG. 30691868 2019 Mar;
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Hoffmann, Nils; Rein, Joel; Sachsenberg, Timo; Hartler, Jürgen; Haug, Kenneth; Mayer, Gerhard; Alka, Oliver; Dayalan, Saravanan; Pearce, Jake T M; Rocca-Serra, Philippe; Qi, Da; Eisenacher, Martin; Perez-Riverol, Yasset; Vizcaíno, Juan Antonio; Salek, Reza M; Neumann, Steffen; Jones, Andrew R Analytical chemistry. 30688441 2019 Mar 05;
The principles of tomorrow's university. Katz, Daniel S; Allen, Gabrielle; Barba, Lorena A; Berg, Devin R; Bik, Holly; Boettiger, Carl; Borgman, Christine L; Brown, C Titus; Buck, Stuart; Burd, Randy; de Waard, Anita; Eve, Martin Paul; Granger, Brian E; Greenberg, Josh; Howe, Adina; Howe, Bill; Khanna, May; Killeen, Timothy L; Mayernik, Matthew; McKiernan, Erin; Mentzel, Chris; Merchant, Nirav; Niemeyer, Kyle E; Noren, Laura; Nusser, Sarah M; Reed, Daniel A; Seidel, Edward; Smith, MacKenzie; Spies, Jeffrey R; Turk, Matt; Van Horn, John D; Walsh, Jay F1000Research. 30687499 2018;
Context-Specific Nested Effects Models. Sverchkov, Yuriy; Ho, Yi-Hsuan; Gasch, Audrey; Craven, Mark Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005-). 30680375 2018 Apr;
Reproducible grey matter patterns index a multivariate, global alteration of brain structure in schizophrenia and bipolar disorder. Schwarz, Emanuel; Doan, Nhat Trung; Pergola, Giulio; Westlye, Lars T; Kaufmann, Tobias; Wolfers, Thomas; Brecheisen, Ralph; Quarto, Tiziana; Ing, Alex J; Carlo, Pasquale Di; Gurholt, Tiril P; Harms, Robbert L; Noirhomme, Quentin; Moberget, Torgeir; Agartz, Ingrid; Andreassen, Ole A; Bellani, Marcella; Bertolino, Alessandro; Blasi, Giuseppe; Brambilla, Paolo; Buitelaar, Jan K; Cervenka, Simon; Flyckt, Lena; Frangou, Sophia; Franke, Barbara; Hall, Jeremy; Heslenfeld, Dirk J; Kirsch, Peter; McIntosh, Andrew M; Nöthen, Markus M; Papassotiropoulos, Andreas; de Quervain, Dominique J-F; Rietschel, Marcella; Schumann, Gunter; Tost, Heike; Witt, Stephanie H; Zink, Mathias; Meyer-Lindenberg, Andreas; IMAGEMEND Consortium, Karolinska Schizophrenia Project (KaSP) Consortium Translational psychiatry. 30664633 2019 Jan 17;
A Data Analysis Method for Using Longitudinal Binary Outcome Data from a SMART to Compare Adaptive Interventions. Dziak, John J; Yap, Jamie R T; Almirall, Daniel; McKay, James R; Lynch, Kevin G; Nahum-Shani, Inbal Multivariate behavioral research. 30663401 2019 Jan 20;
A Potential Role for the STXBP5-AS1 Gene in Adult ADHD Symptoms. Arias-Vásquez, A; Groffen, A J; Spijker, S; Ouwens, K G; Klein, M; Vojinovic, D; Galesloot, T E; Bralten, J; Hottenga, J J; van der Most, P J; Kattenberg, V M; Pool, R; Nolte, I M; Penninx, B W J H; Fedko, I O; Dolan, C V; Nivard, M G; den Braber, A; van Duijn, C M; Hoekstra, P J; Buitelaar, J K; Kiemeney, L A; Hoogman, M; Middeldorp, C M; Draisma, H H M; Vermeulen, S H; Sánchez-Mora, C; Ramos-Quiroga, J A; Ribasés, M; EAGLE-ADHD Consortium; Hartman, C A; Kooij, J J S; Amin, N; Smit, A B; Franke, B; Boomsma, D I Behavior genetics. 30659475 2019 05;
PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient. Kalari, Krishna R; Sinnwell, Jason P; Thompson, Kevin J; Tang, Xiaojia; Carlson, Erin E; Yu, Jia; Vedell, Peter T; Ingle, James N; Weinshilboum, Richard M; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Suman, Vera JCO clinical cancer informatics. 30652605 2018 12;
Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2. Dudenkov, Tanda M; Liu, Duan; Cairns, Junmei; Devarajan, Sandhya; Zhuang, Yongxian; Ingle, James N; Buzdar, Aman U; Robson, Mark E; Kubo, Michiaki; Batzler, Anthony; Barman, Poulami; Jenkins, Gregory D; Carlson, Erin E; Goetz, Matthew P; Northfelt, Donald W; Moreno-Aspitia, Alvaro; Desta, Zeruesenay; Reid, Joel M; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard M Clinical pharmacology and therapeutics. 30648747 2019 Jan 16;
Development and Validation of an Electronic Health Record-Based Machine Learning Model to Estimate Delirium Risk in Newly Hospitalized Patients Without Known Cognitive Impairment. Wong, Andrew; Young, Albert T; Liang, April S; Gonzales, Ralph; Douglas, Vanja C; Hadley, Dexter JAMA network open. 30646095 2018 08 03;
Grey Matter Volume Differences Associated with Extremely Low Levels of Cannabis Use in Adolescence. Orr, Catherine; Spechler, Philip; Cao, Zhipeng; Albaugh, Matthew; Chaarani, Bader; Mackey, Scott; D'Souza, Deepak; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Radhakrishnan, Rajiv; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra; Garavan, Hugh The Journal of neuroscience : the official journal of the Society for Neuroscience. 30643026 2019 Mar 06;
The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology. Schnetz, Michael P; Hochheiser, Harry S; Danks, David J; Landsittel, Douglas P; Vogt, Keith M; Ibinson, James W; Whitehurst, Steven L; McDermott, Sean P; Duque, Melissa Giraldo; Kaynar, Ata M BMC medical research methodology. 30642260 2019 Jan 14;
Creating custom Foldit puzzles for teaching biochemistry. Dsilva, Lorna; Mittal, Shubhi; Koepnick, Brian; Flatten, Jeff; Cooper, Seth; Horowitz, Scott Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology. 30638297 2019 Jan 14;
Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes. Hejblum, Boris P; Weber, Griffin M; Liao, Katherine P; Palmer, Nathan P; Churchill, Susanne; Shadick, Nancy A; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi Scientific data. 30620344 2019 Jan 08;
Analytic Tools for Post-traumatic Epileptogenesis Biomarker Search in Multimodal Dataset of an Animal Model and Human Patients. Duncan, Dominique; Barisano, Giuseppe; Cabeen, Ryan; Sepehrband, Farshid; Garner, Rachael; Braimah, Adebayo; Vespa, Paul; Pitkänen, Asla; Law, Meng; Toga, Arthur W Frontiers in neuroinformatics. 30618695 2018;
Decreased brain connectivity in smoking contrasts with increased connectivity in drinking. Cheng, Wei; Rolls, Edmund T; Robbins, Trevor W; Gong, Weikang; Liu, Zhaowen; Lv, Wujun; Du, Jingnan; Wen, Hongkai; Ma, Liang; Quinlan, Erin Burke; Garavan, Hugh; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Smolka, Michael N; Schumann, Gunter; Kendrick, Keith; Feng, Jianfeng eLife. 30616717 2019 Jan 08;
Notch signaling activation induces cell death in MAPKi-resistant melanoma cells. Mikheil, Dareen M; Prabhakar, Kirthana; Arshad, Ayyan; Rodriguez, Carlos I; Newton, Michael A; Setaluri, Vijayasaradhi Pigment cell & melanoma research. 30614626 2019 Jan 07;
A Monte Carlo Approach to Skill-Based Automated Playtesting. Horn, Britton; Miller, Josh Aaron; Smith, Gillian; Cooper, Seth Proceedings. AAAI Artificial Intelligence and Interactive Digital Entertainment Conference. 30613687 2018 Nov;
Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality. Soler Artigas, María; Sánchez-Mora, Cristina; Rovira, Paula; Richarte, Vanesa; Garcia-Martínez, Iris; Pagerols, Mireia; Demontis, Ditte; Stringer, Sven; ADHD Group of the Psychiatric Genomics Consortium, International Cannabis Consortium; Vink, Jacqueline M; Børglum, Anders D; Neale, Benjamin M; Franke, Barbara; Faraone, Stephen V; Casas, Miguel; Ramos-Quiroga, Josep Antoni; Ribasés, Marta Molecular psychiatry. 30610198 2020 Oct;
Using High-Resolution Variant Frequencies Empowers Clinical Genome Interpretation and Enables Investigation of Genetic Architecture. Whiffin, Nicola; Roberts, Angharad M; Minikel, Eric; Zappala, Zach; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Harrison, Steven M; Thomson, Kate L; Sage, Helen; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel G; Ware, James S American journal of human genetics. 30609406 2019 01 03;
Discovering functional impacts of miRNAs in cancers using a causal deep learning model. Chen, Lujia; Lu, Xinghua BMC medical genomics. 30598118 2018 Dec 31;
Potential corner case cautions regarding publicly available implementations of the National Cancer Institute's nonwear/wear classification algorithm for accelerometer data. Moore 4th, Hyatt E; Haydel, K Farish; Banda, Jorge A; Fiterau, Madalina; Desai, Manisha; Robinson, Thomas N PloS one. 30596771 2018;
Mining data and metadata from the gene expression omnibus. Wang, Zichen; Lachmann, Alexander; Ma'ayan, Avi Biophysical reviews. 30594974 2019 Feb;
Maximizing the promise of citizen science to advance health and prevent disease. King, Abby C; Winter, Sandra J; Chrisinger, Benjamin W; Hua, Jenna; Banchoff, Ann W Preventive medicine. 30593793 2019 Feb;
BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2. Cline, Melissa S; Liao, Rachel G; Parsons, Michael T; Paten, Benedict; Alquaddoomi, Faisal; Antoniou, Antonis; Baxter, Samantha; Brody, Larry; Cook-Deegan, Robert; Coffin, Amy; Couch, Fergus J; Craft, Brian; Currie, Robert; Dlott, Chloe C; Dolman, Lena; den Dunnen, Johan T; Dyke, Stephanie O M; Domchek, Susan M; Easton, Douglas; Fischmann, Zachary; Foulkes, William D; Garber, Judy; Goldgar, David; Goldman, Mary J; Goodhand, Peter; Harrison, Steven; Haussler, David; Kato, Kazuto; Knoppers, Bartha; Markello, Charles; Nussbaum, Robert; Offit, Kenneth; Plon, Sharon E; Rashbass, Jem; Rehm, Heidi L; Robson, Mark; Rubinstein, Wendy S; Stoppa-Lyonnet, Dominique; Tavtigian, Sean; Thorogood, Adrian; Zhang, Can; Zimmermann, Marc; BRCA Challenge Authors; Burn, John; Chanock, Stephen; Rätsch, Gunnar; Spurdle, Amanda B PLoS genetics. 30586411 2018 12;
Pharmacokinetic-Pharmacodynamic interaction associated with venlafaxine-XR remission in patients with major depressive disorder with history of citalopram / escitalopram treatment failure. Ahmed, Ahmed T; Biernacka, Joanna M; Jenkins, Gregory; Rush, A John; Shinozaki, Gen; Veldic, Marin; Kung, Simon; Bobo, William V; Hall-Flavin, Daniel K; Weinshilboum, Richard M; Wang, Liewei; Frye, Mark A Journal of affective disorders. 30578947 2019 03 01;
A concise and persistent feature to study brain resting-state network dynamics: Findings from the Alzheimer's Disease Neuroimaging Initiative. Kuang, Liqun; Han, Xie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative Human brain mapping. 30569583 2019 Mar;
BMI-related cortical morphometry changes are associated with altered white matter structure. Medic, Nenad; Kochunov, Peter; Ziauddeen, Hisham; Ersche, Karen D; Nathan, Pradeep J; Ronan, Lisa; Fletcher, Paul C International journal of obesity (2005). 30568264 2019 03;
Using machine learning to identify health outcomes from electronic health record data. Wong, Jenna; Horwitz, Mara Murray; Zhou, Li; Toh, Sengwee Current epidemiology reports. 30555773 2018 Dec;
Exchangeable Markov survival processes and weak continuity of predictive distributions. Dempsey, Walter; McCullagh, Peter Electronic journal of statistics. 30555616 2017;
Uncovering Biologically Coherent Peripheral Signatures of Health and Risk for Alzheimer's Disease in the Aging Brain. Riedel, Brandalyn C; Daianu, Madelaine; Ver Steeg, Greg; Mezher, Adam; Salminen, Lauren E; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative Frontiers in aging neuroscience. 30555318 2018;
Stochastic Learning for Sparse Discrete Markov Random Fields with Controlled Gradient Approximation Error. Geng, Sinong; Kuang, Zhaobin; Liu, Jie; Wright, Stephen; Page, David Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. 30555282 2018 Aug;
Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon E Current biology : CB. 30554901 2019 Jan 07;
A nurse-driven method for developing artificial intelligence in ''smart'' homes for aging-in-place. Fritz, Roschelle L; Dermody, Gordana Nursing outlook. 30551883 2018 Nov 23;
A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization. Kuang, Zhaobin; Bao, Yujia; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Willett, Rebecca; Page, David Methods in molecular biology (Clifton, N.J.). 30547447 2019;
ADAPTIVE GRADIENT DESCENT OPTIMIZATION OF INITIAL MOMENTA FOR GEODESIC SHOOTING IN DIFFEOMORPHISMS. Fleishman, Greg M; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 30546823 2017 Apr;
Monitoring Online Discussions About Suicide Among Twitter Users With Schizophrenia: Exploratory Study. Hswen, Yulin; Naslund, John A; Brownstein, John S; Hawkins, Jared B JMIR mental health. 30545811 2018 Dec 13;
Peer victimization and its impact on adolescent brain development and psychopathology. Quinlan, Erin Burke; Barker, Edward D; Luo, Qiang; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium Molecular psychiatry. 30542059 2020 11;
Age-Related Differences in Brain Morphology and the Modifiers in Middle-Aged and Older Adults. Zhao, Lu; Matloff, William; Ning, Kaida; Kim, Hosung; Dinov, Ivo D; Toga, Arthur W Cerebral cortex (New York, N.Y. : 1991). 30535294 2019 09 13;
Validity of Privacy-Protecting Analytical Methods That Use Only Aggregate-Level Information to Conduct Multivariable-Adjusted Analysis in Distributed Data Networks. Li, Xiaojuan; Fireman, Bruce H; Curtis, Jeffrey R; Arterburn, David E; Fisher, David P; Moyneur, Érick; Gallagher, Mia; Raebel, Marsha A; Nowell, W Benjamin; Lagreid, Lindsay; Toh, Sengwee American journal of epidemiology. 30535131 2019 Apr 01;
atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding. Shin, Sunyoung; Hudson, Rebecca; Harrison, Christopher; Craven, Mark; Kele?, Sündüz Bioinformatics (Oxford, England). 30534948 2019 08 01;
Genetic analysis of neurodegenerative diseases in a pathology cohort. Blauwendraat, Cornelis; Pletnikova, Olga; Geiger, Joshua T; Murphy, Natalie A; Abramzon, Yevgeniya; Rudow, Gay; Mamais, Adamantios; Sabir, Marya S; Crain, Barbara; Ahmed, Sarah; Rosenthal, Liana S; Bakker, Catherine C; Faghri, Faraz; Chia, Ruth; Ding, Jin Neurobiology of aging. 30528841 2019 Apr;
Unveiling the Role of the Most Impactful Cardiovascular Risk Locus through Haplotype Editing. Lo Sardo, Valentina; Chubukov, Pavel; Ferguson, William; Kumar, Aditya; Teng, Evan L; Duran, Michael; Zhang, Lei; Cost, Gregory; Engler, Adam J; Urnov, Fyodor; Topol, Eric J; Torkamani, Ali; Baldwin, Kristin K Cell. 30528432 2018 Dec 13;
Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma. Hong, Na; Zhang, Ning; Wu, Huawei; Lu, Shanshan; Yu, Yue; Hou, Li; Lu, Yinying; Liu, Hongfang; Jiang, Guoqian BMC medical informatics and decision making. 30526572 2018 12 07;
Allele-Specific Methylation of SPDEF: A Novel Moderator of Psychosocial Stress and Substance Abuse. Tay, Nicole; Macare, Christine; Liu, Yun; Ruggeri, Barbara; Jia, Tianye; Chu, Congying; Biondo, Francesca; Ing, Alex; Luo, Qiang; Sarkysian, Daniil; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Frieling, Helge; Bleich, Stefan; Barker, Edward D; Syvänen, Ann-Christine; Rüegg, Joëlle; Ekström, Tomas J; Bakalkin, Georgy; Schumann, Gunter; IMAGEN Consortium The American journal of psychiatry. 30525907 2019 02 01;
Collaboration Matters: Honey Bee Health as a Transdisciplinary Model for Understanding Real-World Complexity. Suryanarayanan, Sainath; Kleinman, Daniel Lee; Gratton, Claudio; Toth, Amy; Guedot, Christelle; Groves, Russell; Piechowski, John; Moore, Brad; Hagedorn, Deborah; Kauth, Dayton; Swan, Heather; Celley, Mary Bioscience. 30524133 2018 Dec 01;
A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry. Swearingen, Kristian E; Eng, Jimmy K; Shteynberg, David; Vigdorovich, Vladimir; Springer, Timothy A; Mendoza, Luis; Sather, D Noah; Deutsch, Eric W; Kappe, Stefan H I; Moritz, Robert L Journal of proteome research. 30523691 2019 Feb 01;
Exploration of Shared Genetic Architecture Between Subcortical Brain Volumes and Anorexia Nervosa. Walton, E; Hibar, D; Yilmaz, Z; Jahanshad, N; Cheung, J; Batury, V-L; Seitz, J; Bulik, C M; PGC-ED; ENIGMA Genetics Working Group; Thompson, P M; Ehrlich, Stefan Molecular neurobiology 30519816 2019 Jul
The Role of the Aryl Hydrocarbon Receptor (AHR) in Immune and Inflammatory Diseases. Neavin, Drew R; Liu, Duan; Ray, Balmiki; Weinshilboum, Richard M International journal of molecular sciences. 30513921 2018 Dec 03;
Practical Model Selection for Prospective Virtual Screening. Liu, Shengchao; Alnammi, Moayad; Ericksen, Spencer S; Voter, Andrew F; Ananiev, Gene E; Keck, James L; Hoffmann, F Michael; Wildman, Scott A; Gitter, Anthony Journal of chemical information and modeling. 30500183 2019 Jan 28;
Genomic kinship construction to enhance genetic analyses in the human connectome project data. Kochunov, Peter; Donohue, Brian; Mitchell, Braxton D; Ganjgahi, Habib; Adhikari, Bhim; Ryan, Meghann; Medland, Sarah E; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Fieremans, Els; Novikov, Dmitry S; Marcus, Daniel; Van Essen, David C; Glahn, David Human brain mapping. 30496643 2019 Apr 01;
High-frequency actionable pathogenic exome variants in an average-risk cohort. Rego, Shannon; Dagan-Rosenfeld, Orit; Zhou, Wenyu; Sailani, M Reza; Limcaoco, Patricia; Colbert, Elizabeth; Avina, Monika; Wheeler, Jessica; Craig, Colleen; Salins, Denis; Röst, Hannes L; Dunn, Jessilyn; McLaughlin, Tracey; Steinmetz, Lars M; Bernstein, Jonathan A; Snyder, Michael P Cold Spring Harbor molecular case studies. 30487145 2018 12;
A primer on deep learning in genomics. Zou, James; Huss, Mikael; Abid, Abubakar; Mohammadi, Pejman; Torkamani, Ali; Telenti, Amalio Nature genetics 30478442 2019 01
Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. Schleifer, Charles; Lin, Amy; Kushan, Leila; Ji, Jie Lisa; Yang, Genevieve; Bearden, Carrie E; Anticevic, Alan The Journal of neuroscience : the official journal of the Society for Neuroscience. 30478034 2019 Feb 13;
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Köhler, Sebastian; Carmody, Leigh; Vasilevsky, Nicole; Jacobsen, Julius O B; Danis, Daniel; Gourdine, Jean-Philippe; Gargano, Michael; Harris, Nomi L; Matentzoglu, Nicolas; McMurry, Julie A; Osumi-Sutherland, David; Cipriani, Valentina; Balhoff, James P; Conlin, Tom; Blau, Hannah; Baynam, Gareth; Palmer, Richard; Gratian, Dylan; Dawkins, Hugh; Segal, Michael; Jansen, Anna C; Muaz, Ahmed; Chang, Willie H; Bergerson, Jenna; Laulederkind, Stanley J F; Yüksel, Zafer; Beltran, Sergi; Freeman, Alexandra F; Sergouniotis, Panagiotis I; Durkin, Daniel; Storm, Andrea L; Hanauer, Marc; Brudno, Michael; Bello, Susan M; Sincan, Murat; Rageth, Kayli; Wheeler, Matthew T; Oegema, Renske; Lourghi, Halima; Della Rocca, Maria G; Thompson, Rachel; Castellanos, Francisco; Priest, James; Cunningham-Rundles, Charlotte; Hegde, Ayushi; Lovering, Ruth C; Hajek, Catherine; Olry, Annie; Notarangelo, Luigi; Similuk, Morgan; Zhang, Xingmin A; Gómez-Andrés, David; Lochmüller, Hanns; Dollfus, Hélène; Rosenzweig, Sergio; Marwaha, Shruti; Rath, Ana; Sullivan, Kathleen; Smith, Cynthia; Milner, Joshua D; Leroux, Dorothée; Boerkoel, Cornelius F; Klion, Amy; Carter, Melody C; Groza, Tudor; Smedley, Damian; Haendel, Melissa A; Mungall, Chris; Robinson, Peter N Nucleic acids research. 30476213 2019 Jan 08;
Protein Inference Using PIA Workflows and PSI Standard File Formats. Uszkoreit, Julian; Perez-Riverol, Yasset; Eggers, Britta; Marcus, Katrin; Eisenacher, Martin Journal of proteome research. 30474983 2019 02 01;
Reply to: New Meta- and Mega-analyses of Magnetic Resonance Imaging Findings in Schizophrenia: Do They Really Increase Our Knowledge About the Nature of the Disease Process? van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Clark, Vincent P; Mueller, Bryon A; de Zwarte, Sonja M C; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Gurholt, Tiril P; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Catts, Stanley; Fullerton, Janice M; Green, Melissa J; Henskens, Frans; Jablensky, Assen; Mowry, Bryan J; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Hong, Elliot; Kochunov, Peter; Gur, Raquel E; Gur, Ruben C; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; Potkin, Steven G; Preda, Adrian; Fan, Fengmei; Ehrlich, Stefan; King, Margaret D; De Haan, Lieuwe; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; Pomarol-Clotet, Edith; Kelly, Sinead; Ciufolini, Simone; Radua, Joaquim; Murray, Robin; Marques, Tiago Reis; Simmons, Andrew; Borgwardt, Stefan; Schönborn-Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Yun, Je-Yeon; Cannon, Dara M; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; McIntosh, Andrew M; Whalley, Heather C; Knöchel, Christian; Oertel-Knöchel, Viola; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A Biological psychiatry. 30470561 2019 04 01;
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Automated detection of outbreaks of antimicrobial-resistant bacteria in Japan. Tsutsui, A; Yahara, K; Clark, A; Fujimoto, K; Kawakami, S; Chikumi, H; Iguchi, M; Yagi, T; Baker, M A; O'Brien, T; Stelling, J The Journal of hospital infection. 30321629 2018 Oct 12;
Logistic regression model training based on the approximate homomorphic encryption. Kim, Andrey; Song, Yongsoo; Kim, Miran; Lee, Keewoo; Cheon, Jung Hee BMC medical genomics. 30309349 2018 Oct 11;
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Patchwork of contrasting medication cultures across the USA. Melamed, Rachel D; Rzhetsky, Andrey Nature communications. 30301884 2018 10 09;
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Framing the challenges of artificial intelligence in medicine. Yu, Kun-Hsing; Kohane, Isaac S BMJ quality & safety. 30291179 2019 03;
Targeted sequencing identifies a missense variant in the BEST3 gene associated with antihypertensive response to hydrochlorothiazide. Singh, Sonal; Wang, Zhiying; Shahin, Mohamed H; Langaee, Taimour Y; Gong, Yan; Turner, Stephen T; Chapman, Arlene B; Gums, John G; McDonough, Caitrin W; Bailey, Kent R; Beitelshees, Amber L; Cooper-DeHoff, Rhonda M; Scherer, Steve; Boerwinkle, Eric; Johns Pharmacogenetics and genomics. 30289819 2018 Nov;
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Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia. Sønderby, Ida E; Gústafsson, Ómar; Doan, Nhat Trung; Hibar, Derrek P; Martin-Brevet, Sandra; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Michael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas; Blangero, John; Boomsma, Dorret I; Bralten, Janita; Brattbak, Hans-Richard; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Calhoun, Vince; Caspers, Svenja; Cavalleri, Gianpiero; Chen, Chi-Hua; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dale, Anders M; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivières, Sylvane; Donohoe, Gary; Draganski, Bogdan; Ehrlich, Stefan; Espeseth, Thomas; Fisher, Simon E; Franke, Barbara; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans; Groenewold, Nynke A; Haavik, Jan; Håberg, Asta; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Heinz, Andreas; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff, Hilleke E; Ikeda, Masashi; Jahanshad, Neda; Jernigan, Terry; Jockwitz, Christiane; Johansson, Stefan; Jonsdottir, Gudrun A; Jönsson, Erik G; Kahn, Rene; Kaufmann, Tobias; Kelly, Sinead; Kikuchi, Masataka; Knowles, Emma E M; Kolskår, Knut K; Kwok, John B; Hellard, Stephanie Le; Leu, Costin; Liu, Jingyu; Lundervold, Astri J; Lundervold, Arvid; Martin, Nicholas G; Mather, Karen; Mathias, Samuel R; McCormack, Mark; McMahon, Katie L; McRae, Allan; Milaneschi, Yuri; Moreau, Clara; Morris, Derek; Mothersill, David; Mühleisen, Thomas W; Murray, Robin; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel; Paus, Tomas; Pausova, Zdenka; Penninx, Brenda; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Pudas, Sara; Quinlan, Erin; Quintana, Daniel S; Reinbold, Céline S; Marques, Tiago Reis; Reymond, Alexandre; Richard, Genevieve; Rodriguez-Herreros, Borja; Roiz-Santiañez, Roberto; Rokicki, Jarek; Rucker, James; Sachdev, Perminder; Sanders, Anne-Marthe; Sando, Sigrid B; Schmaal, Lianne; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Sisodiya, Sanjay; Steen, Vidar M; Stein, Dan J; Steinberg, Stacy; Strike, Lachlan; Teumer, Alexander; Thalamuthu, Anbu; Tordesillas-Gutierrez, Diana; Turner, Jessica; Ueland, Torill; Uhlmann, Anne; Ulfarsson, Magnus O; van 't Ent, Dennis; van der Meer, Dennis; van Haren, Neeltje E M; Vaskinn, Anja; Vassos, Evangelos; Walters, G Bragi; Wang, Yunpeng; Wen, Wei; Whelan, Christopher D; Wittfeld, Katharina; Wright, Margie; Yamamori, Hidenaga; Zayats, Tetyana; Agartz, Ingrid; Westlye, Lars T; Jacquemont, Sébastien; Djurovic, Srdjan; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul; Andreassen, Ole A; 16p11.2 European Consortium, for the ENIGMA-CNV working group Molecular psychiatry. 30283035 2020 03;
Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities. Halilaj, Eni; Rajagopal, Apoorva; Fiterau, Madalina; Hicks, Jennifer L; Hastie, Trevor J; Delp, Scott L Journal of biomechanics. 30279002 2018 Sep 13;
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Randomization-Based Statistical Inference: A Resampling and Simulation Infrastructure. Dinov, Ivo D; Palanimalai, Selvam; Khare, Ashwini; Christou, Nicolas Teaching statistics. 30270947 2018;
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Smaller hippocampal CA1 subfield volume in posttraumatic stress disorder. Chen, Lyon W; Sun, Delin; Davis, Sarah L; Haswell, Courtney C; Dennis, Emily L; Swanson, Chelsea A; Whelan, Christopher D; Gutman, Boris; Jahanshad, Neda; Iglesias, Juan Eugenio; Thompson, Paul; Mid-Atlantic MIRECC Workgroup; Wagner, H Ryan; Saemann, Phil Depression and anxiety. 30256497 2018 Nov;
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Extracellular Matrix in Cardiovascular Pathophysiology. Bloksgaard, Maria; Lindsey, Merry L; Martinez-Lemus, Luis A American journal of physiology. Heart and circulatory physiology. 30239231 2018 Sep 21;
Symptom dimensions in obsessive-compulsive disorder as predictors of neurobiology and treatment response. Thorsen, Anders Lillevik; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile A Current treatment options in psychiatry. 30237966 2018 Mar;
Flexible and Fast Mapping of Peptides to a Proteome with ProteoMapper. Mendoza, Luis; Deutsch, Eric W; Sun, Zhi; Campbell, David S; Shteynberg, David D; Moritz, Robert L Journal of proteome research. 30230343 2018 Sep 28;
AspEm: Embedding Learning by Aspects in Heterogeneous Information Networks. Shi, Yu; Gui, Huan; Zhu, Qi; Kaplan, Lance; Han, Jiawei Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. 30221081 2018;
PReP: Path-Based Relevance from a Probabilistic Perspective in Heterogeneous Information Networks. Shi, Yu; Chan, Po-Wei; Zhuang, Honglei; Gui, Huan; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 30221026 2017 Aug;
Investigating inequities in hospital care among lesbian, gay, bisexual, and transgender (LGBT) individuals using social media. Hswen, Yulin; Sewalk, Kara C; Alsentzer, Emily; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared B Social science & medicine (1982). 30219749 2018 10;
3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification. Kalinin, Alexandr A; Allyn-Feuer, Ari; Ade, Alex; Fon, Gordon-Victor; Meixner, Walter; Dilworth, David; Husain, Syed S; de Wett, Jeffrey R; Higgins, Gerald A; Zheng, Gen; Creekmore, Amy; Wiley, John W; Verdone, James E; Veltri, Robert W; Pienta, Kenneth J; Coffey, Donald S; Athey, Brian D; Dinov, Ivo D Scientific reports. 30209281 ;
A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways. Lu, Songjian; Fan, Xiaonan; Chen, Lujia; Lu, Xinghua PloS one. 30208101 2018;
SequencEnG: an Interactive Knowledge Base of Sequencing Techniques. Zhang, Yi; Manjunath, Mohith; Kim, Yeonsung; Heintz, Joerg; Song, Jun S Bioinformatics (Oxford, England). 30202870 2018 Sep 08;
Collaborative Problem Solving in an Open-Ended Scientific Discovery Game. Bauer, Aaron; Popovi?, Zoran Proceedings of the ACM on human-computer interaction. 30198019 2017 Nov;
Motor neuron loss and neuroinflammation in a model of ?-synuclein-induced neurodegeneration. Sorrentino, Zachary A; Xia, Yuxing; Funk, Cory; Riffe, Cara J; Rutherford, Nicola J; Ceballos Diaz, Carolina; Sacino, Amanda N; Price, Nathan D; Golde, Todd E; Giasson, Benoit I; Chakrabarty, Paramita Neurobiology of disease. 30195075 2018 Dec;
The ventromedial prefrontal cortex: a putative locus for trait inattention. Albaugh, Matthew D; Potter, Alexandra S Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 30194422 2019 Jan;
Efficacy of Contextually Tailored Suggestions for Physical Activity: A Micro-randomized Optimization Trial of HeartSteps. Klasnja, Predrag; Smith, Shawna; Seewald, Nicholas J; Lee, Andy; Hall, Kelly; Luers, Brook; Hekler, Eric B; Murphy, Susan A Annals of behavioral medicine : a publication of the Society of Behavioral Medicine. 30192907 2018 Sep 05;
Mixed Graphical Models for Integrative Causal Analysis with Application to Chronic Lung Disease Diagnosis and Prognosis. Sedgewick, Andrew J; Buschur, Kristina; Shi, Ivy; Ramsey, Joseph D; Raghu, Vineet K; Manatakis, Dimitris V; Zhang, Yingze; Bon, Jessica; Chandra, Divay; Karoleski, Chad; Sciurba, Frank C; Spirtes, Peter; Glymour, Clark; Benos, Panayiotis V Bioinformatics (Oxford, England). 30192904 2018 Sep 05;
A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol. Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Turner, Jessica; Grotegerd, Dominik; Dannlowski, Udo; Kugel, Harald; Engelen, Jennifer; Dietsche, Bruno; Krug, Axel; Kircher, Tilo; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Boedhoe, Premika S W; van der Werf, Ysbrand D; van den Heuvel, Odile A; Ipser, Jonathan; Uhlmann, Anne; Stein, Dan J; Dickie, Erin; Voineskos, Aristotle N; Malhotra, Anil K; Pizzagalli, Fabrizio; Calhoun, Vince D; Waller, Lea; Veer, Ilja M; Walter, Hernik; Buchanan, Robert W; Glahn, David C; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter Brain imaging and behavior. 30191514 ;
Generalized Score Functions for Causal Discovery. Huang, Biwei; Zhang, Kun; Lin, Yizhu; Schölkopf, Bernhard; Glymour, Clark KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 30191079 2018 Aug;
Cross-tissue eQTL enrichment of associations in schizophrenia. Bettella, Francesco; Brown, Andrew A; Smeland, Olav B; Wang, Yunpeng; Witoelar, Aree; Buil Demur, Alfonso A; Thompson, Wesley K; Zuber, Verena; Dale, Anders M; Djurovic, Srdjan; Andreassen, Ole A PloS one 30188921 2018
The conserved protective cyclic AMP-phosphodiesterase function PDE4B is expressed in the adenoma and adjacent normal colonic epithelium of mammals and silenced in colorectal cancer. Pleiman, Jennifer K; Irving, Amy A; Wang, Zhishi; Toraason, Erik; Clipson, Linda; Dove, William F; Deming, Dustin A; Newton, Michael A PLoS genetics. 30188895 2018 09;
Using structural MRI to identify bipolar disorders - 13 site machine learning study in 3020 individuals from the ENIGMA Bipolar Disorders Working Group. Nunes, Abraham; Schnack, Hugo G; Ching, Christopher R K; Agartz, Ingrid; Akudjedu, Theophilus N; Alda, Martin; Alnæs, Dag; Alonso-Lana, Silvia; Bauer, Jochen; Baune, Bernhard T; Bøen, Erlend; Bonnin, Caterina Del Mar; Busatto, Geraldo F; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Chaim-Avancini, Tiffany M; Dannlowski, Udo; Díaz-Zuluaga, Ana M; Dietsche, Bruno; Doan, Nhat Trung; Duchesnay, Edouard; Elvsåshagen, Torbjørn; Emden, Daniel; Eyler, Lisa T; Fatjó-Vilas, Mar; Favre, Pauline; Foley, Sonya F; Fullerton, Janice M; Glahn, David C; Goikolea, Jose M; Grotegerd, Dominik; Hahn, Tim; Henry, Chantal; Hibar, Derrek P; Houenou, Josselin; Howells, Fleur M; Jahanshad, Neda; Kaufmann, Tobias; Kenney, Joanne; Kircher, Tilo T J; Krug, Axel; Lagerberg, Trine V; Lenroot, Rhoshel K; López-Jaramillo, Carlos; Machado-Vieira, Rodrigo; Malt, Ulrik F; McDonald, Colm; Mitchell, Philip B; Mwangi, Benson; Nabulsi, Leila; Opel, Nils; Overs, Bronwyn J; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Redlich, Ronny; Roberts, Gloria; Rosa, Pedro G; Salvador, Raymond; Satterthwaite, Theodore D; Soares, Jair C; Stein, Dan J; Temmingh, Henk S; Trappenberg, Thomas; Uhlmann, Anne; van Haren, Neeltje E M; Vieta, Eduard; Westlye, Lars T; Wolf, Daniel H; Yüksel, Dilara; Zanetti, Marcus V; Andreassen, Ole A; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group Molecular psychiatry. 30171211 2020 Sep;
Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures. Wang, Zichen; He, Edward; Sani, Kevin; Jagodnik, Kathleen M; Silverstein, Moshe C; Ma'ayan, Avi Bioinformatics (Oxford, England). 30169739 2019 Apr 01;
Exogenous CXCL4 Infusion Inhibits Macrophage Phagocytosis by Limiting CD36 Signaling to Enhance Post-myocardial Infarction Cardiac Dilation and Mortality. Lindsey, Merry L; Jung, Mira; Yabluchanskiy, Andriy; Cannon, Presley L; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; DeLeon-Pennell, Kristine Y; Valerio, Fritz M; Harrison, Courtney L; Ripplinger, Crystal M; Hall, Michael E; Ma, Yonggang Cardiovascular research. 30169632 2018 Aug 29;
Maturation of the Human Cerebral Cortex During Adolescence: Myelin or Dendritic Arbor? Patel, Y; Shin, J; Gowland, P A; Pausova, Z; Paus, T; IMAGEN consortium Cerebral cortex (New York, N.Y. : 1991). 30169567 2019 07 22;
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. Bukhari, Syed Ahmad Chan; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Rubelt, Florian; Cheung, Kei-Hoi; Kleinstein, Steven H Frontiers in immunology. 30166985 2018;
Controlled feature selection and compressive big data analytics: Applications to biomedical and health studies. Marino, Simeone; Xu, Jiachen; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Dinov, Ivo D PloS one. 30161148 2018;
Smaller subcortical volume in Parkinson patients with rapid eye movement sleep behavior disorder. Kamps, Sanne; van den Heuvel, Odile A; van der Werf, Ysbrand D; Berendse, Henk W; Weintraub, Daniel; Vriend, Chris Brain imaging and behavior. 30155787 2019 Oct;
Extracellular matrix roles in cardiorenal fibrosis: Potential therapeutic targets for CVD and CKD in the elderly. Toba, Hiroe; Lindsey, Merry L Pharmacology & therapeutics. 30149103 2018 Aug 25;
Comparison of strategies for scalable causal discovery of latent variable models from mixed data. Raghu, Vineet K; Ramsey, Joseph D; Morris, Alison; Manatakis, Dimitrios V; Sprites, Peter; Chrysanthis, Panos K; Glymour, Clark; Benos, Panayiotis V International journal of data science and analytics. 30148202 2018;
HiGlass: web-based visual exploration and analysis of genome interaction maps. Kerpedjiev, Peter; Abdennur, Nezar; Lekschas, Fritz; McCallum, Chuck; Dinkla, Kasper; Strobelt, Hendrik; Luber, Jacob M; Ouellette, Scott B; Azhir, Alaleh; Kumar, Nikhil; Hwang, Jeewon; Lee, Soohyun; Alver, Burak H; Pfister, Hanspeter; Mirny, Leonid A; Pa Genome biology. 30143029 2018 08 24;
Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy. NULL Journal of proteome research. 30141336 2018 Aug 31;
Scoring Bayesian Networks of Mixed Variables. Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F International journal of data science and analytics. 30140730 2018 Aug;
EarBit: Using Wearable Sensors to Detect Eating Episodes in Unconstrained Environments. Bedri, Abdelkareem; Li, Richard; Haynes, Malcolm; Kosaraju, Raj Prateek; Grover, Ishaan; Prioleau, Temiloluwa; Beh, Min Yan; Goel, Mayank; Starner, Thad; Abowd, Gregory Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. 30135957 2017 Sep;
Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study. Can, Anil; Rudy, Robert F; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose Neurology 30135253 2018 09 18
LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling. DeLeon-Pennell, Kristine Y; Mouton, Alan J; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L Basic research in cardiology. 30132266 2018 08 21;
Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative. Halilaj, E; Le, Y; Hicks, J L; Hastie, T J; Delp, S L Osteoarthritis and cartilage. 30130590 ;
Large Scale Semi-Automated Labeling of Routine Free-Text Clinical Records for Deep Learning. Trivedi, Hari M; Panahiazar, Maryam; Liang, April; Lituiev, Dmytro; Chang, Peter; Sohn, Jae Ho; Chen, Yunn-Yi; Franc, Benjamin L; Joe, Bonnie; Hadley, Dexter Journal of digital imaging. 30128778 2019 Feb;
Variation graph toolkit improves read mapping by representing genetic variation in the reference. Garrison, Erik; Sirén, Jouni; Novak, Adam M; Hickey, Glenn; Eizenga, Jordan M; Dawson, Eric T; Jones, William; Garg, Shilpa; Markello, Charles; Lin, Michael F; Paten, Benedict; Durbin, Richard Nature biotechnology. 30125266 2018 Oct;
HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS. Wu, Jianfeng; Zhang, Jie; Shi, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin Proceedings. IEEE International Symposium on Biomedical Imaging. 30123414 2018 Apr;
COMT Val158Met Polymorphism and Social Impairment Interactively Affect Attention-Deficit Hyperactivity Symptoms in Healthy Adolescents. Millenet, Sabina K; Nees, Frauke; Heintz, Stefan; Bach, Christiane; Frank, Josef; Vollstädt-Klein, Sabine; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Fröhner, Juliane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaire, Herve; Martinot, Jean-Luc; Martinot, Marie-Laure P; Papadoulos, Dimitri O; Paus, Tomá?; Poustka, Luise; Rietschel, Marcella; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Banaschewski, Tobias; Hohmann, Sarah Frontiers in genetics. 30108607 ;
Distinct brain structure and behavior related to ADHD and conduct disorder traits. Bayard, Frida; Nymberg Thunell, Charlotte; Abé, Christoph; Almeida, Rita; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; Penttilä, Jani; Kappel, Viola; Grimmer, Yvonne; Fadai, Tahmine; van Noort, Betteke; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Petrovic, Predrag; IMAGEN Consortium Molecular psychiatry. 30108313 2020 Nov;
Iterative Design of Visual Analytics for a Clinician-in-the-loop Smart Home. Ghods, Alireza; Caffrey, Kathleen; Lin, Beiyu; Fraga, Kylie; Fritz, Roschelle; Schmitter-Edgecombe, Maureen; Hundhausen, Christopher; Cook, Diane J IEEE journal of biomedical and health informatics. 30106700 2018 Aug 08;
A neurobiological pathway to smoking in adolescence: TTC12-ANKK1-DRD2 variants and reward response. Macare, Christine; Ducci, Francesca; Zhang, Yuning; Ruggeri, Barbara; Jia, Tianye; Kaakinen, Marika; Kalsi, Gursharan; Charoen, Pimphen; Casoni, Filippo; Peters, Jan; Bromberg, Uli; Hill, Matthew; Buxton, Jessica; Blakemore, Alexandra; Veijola, Juha; Büchel, Christian; Banaschewski, Tobias; Bokde, Arun L W; Conrod, Patricia; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Martinot, Jean-Luc; Paus, Tomá?; Desrivières, Sylvane; Munafò, Marcus; Järvelin, Marjo-Riitta; Schumann, Gunter; IMAGEN Consortium European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. 30104163 2018 10;
Linkage of the ACR National Mammography Database to the Network of State Cancer Registries: Proof of Concept Evaluation by the ACR National Mammography Database Committee. Zuley, Margarita L; Nishikawa, Robert M; Lee, Cindy S; Burnside, Elizabeth; Rosenberg, Robert; Sickles, Edward A; Berg, Wendie; Leung, Jessica; Harvey, Jennifer; Sengupta, Debapriya; Gur, David Journal of the American College of Radiology : JACR. 30100161 2019 Jan;
Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project. Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Snyder, Michael; Baker, Mark S; Deutsch, Eric W Journal of proteome research. 30099871 2018 Aug 23;
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. Carass, Aaron; Cuzzocreo, Jennifer L; Han, Shuo; Hernandez-Castillo, Carlos R; Rasser, Paul E; Ganz, Melanie; Beliveau, Vincent; Dolz, Jose; Ben Ayed, Ismail; Desrosiers, Christian; Thyreau, Benjamin; Romero, José E; Coupé, Pierrick; Manjón, José V; Fonov NeuroImage. 30099076 2018 Dec;
Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. Meyer, Wynn K; Jamison, Jerrica; Richter, Rebecca; Woods, Stacy E; Partha, Raghavendran; Kowalczyk, Amanda; Kronk, Charles; Chikina, Maria; Bonde, Robert K; Crocker, Daniel E; Gaspard, Joseph; Lanyon, Janet M; Marsillach, Judit; Furlong, Clement E; Clark, Nathan L Science (New York, N.Y.). 30093596 2018 08 10;
Attention deficit hyperactivity disorder symptoms as antecedents of later psychotic outcomes in 22q11.2 deletion syndrome. Niarchou, Maria; Chawner, Samuel J R A; Fiksinski, Ania; Vorstman, Jacob A S; Maeder, Johanna; Schneider, Maude; Eliez, Stephan; Armando, Marco; Pontillo, Maria; Vicari, Stefano; McDonald-McGinn, Donna M; Emanuel, Beverly S; Zackai, Elaine H; Bearden, Carrie E; Shashi, Vandana; Hooper, Stephen R; Owen, Michael J; Gur, Raquel E; Wray, Naomi R; van den Bree, Marianne B M; Thapar, Anita; International 22q11.2 Deletion Syndrome Brain and Behavior Consortium Schizophrenia research. 30093352 2019 02;
Web services for data warehouses: OMOP and PCORnet on i2b2. Klann, Jeffrey G; Phillips, Lori C; Herrick, Christopher; Joss, Matthew A H; Wagholikar, Kavishwar B; Murphy, Shawn N Journal of the American Medical Informatics Association : JAMIA. 30085008 2018 10 01;
A tissue-based draft map of the murine MHC class I immunopeptidome. Schuster, Heiko; Shao, Wenguang; Weiss, Tobias; Pedrioli, Patrick G A; Roth, Patrick; Weller, Michael; Campbell, David S; Deutsch, Eric W; Moritz, Robert L; Planz, Oliver; Rammensee, Hans-Georg; Aebersold, Ruedi; Caron, Etienne Scientific data. 30084848 2018 08 07;
Network enhancement as a general method to denoise weighted biological networks. Wang, Bo; Pourshafeie, Armin; Zitnik, Marinka; Zhu, Junjie; Bustamante, Carlos D; Batzoglou, Serafim; Leskovec, Jure Nature communications. 30082777 2018 08 06;
Mapping and interpreting the dynamic connectivity of the brain. Chang, Catie; Keilholz, Shella; Miller, Robyn; Woolrich, Mark NeuroImage. 30075278 2018 10 15;
Examination of the Neural Basis of Psychoticlike Experiences in Adolescence During Reward Processing. Papanastasiou, Evangelos; Mouchlianitis, Elias; Joyce, Dan W; McGuire, Philip; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Spechler, Philip; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Shergill, Sukhwinder; IMAGEN Consortium JAMA psychiatry. 30073329 2018 10 01;
Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline. Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Fox, Peter T; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter Human brain mapping. 30052318 2018 Dec;
Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling. Kim, Hosung; Caldairou, Benoit; Bernasconi, Andrea; Bernasconi, Neda Frontiers in neuroinformatics. 30050423 2018;
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi PLoS computational biology. 30048444 2018 07;
Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging. Petrov, Dmitry; Gutman, Boris A; Yu, Shih-Hua Julie; van Erp, Theo G M; Turner, Jessica A; Schmaal, Lianne; Veltman, Dick; Wang, Lei; Alpert, Kathryn; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Ching, Christopher R K; Calhoun, Vince; Glahn, David; Satterthwaite, Theodore D; Andreasen, Ole Andreas; Borgwardt, Stefan; Howells, Fleur; Groenewold, Nynke; Voineskos, Aristotle; Radua, Joaquim; Potkin, Steven G; Crespo-Facorro, Benedicto; Tordesillas-Gutiérrez, Diana; Shen, Li; Lebedeva, Irina; Spalletta, Gianfranco; Donohoe, Gary; Kochunov, Peter; Rosa, Pedro G P; James, Anthony; Dannlowski, Udo; Baune, Bernhard T; Aleman, André; Gotlib, Ian H; Walter, Henrik; Walter, Martin; Soares, Jair C; Ehrlich, Stefan; Gur, Ruben C; Doan, N Trung; Agartz, Ingrid; Westlye, Lars T; Harrisberger, Fabienne; Riecher-Rössler, Anita; Uhlmann, Anne; Stein, Dan J; Dickie, Erin W; Pomarol-Clotet, Edith; Fuentes-Claramonte, Paola; Canales-Rodríguez, Erick Jorge; Salvador, Raymond; Huang, Alexander J; Roiz-Santiañez, Roberto; Cong, Shan; Tomyshev, Alexander; Piras, Fabrizio; Vecchio, Daniela; Banaj, Nerisa; Ciullo, Valentina; Hong, Elliot; Busatto, Geraldo; Zanetti, Marcus V; Serpa, Mauricio H; Cervenka, Simon; Kelly, Sinead; Grotegerd, Dominik; Sacchet, Matthew D; Veer, Ilya M; Li, Meng; Wu, Mon-Ju; Irungu, Benson; Walton, Esther; Thompson, Paul M Machine learning in medical imaging. MLMI (Workshop). 30035274 2017 Sep;
Learning causality and causality-related learning: some recent progress. Zhang, Kun; Schölkopf, Bernhard; Spirtes, Peter; Glymour, Clark National science review. 30034911 2018 Jan;
ENIGMA MILITARY BRAIN INJURY: A COORDINATED META-ANALYSIS OF DIFFUSION MRI FROM MULTIPLE COHORTS. Dennis, Emily L; Wilde, Elisabeth A; Newsome, Mary R; Scheibel, Randall S; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin S C; Drennon, Ann Marie; York, Gerald E; Bigler, Erin D; Abildskov, Tracy J; Taylor, Brian A; Jaramillo, Carlos A; Eapen, Blessen; Belanger, Heather; Gupta, Vikash; Morey, Rajendra; Haswell, Courtney; Levin, Harvey S; Hinds 2nd, Sidney R; Walker, William C; Thompson, Paul M; Tate, David F Proceedings. IEEE International Symposium on Biomedical Imaging. 30034577 2018 Apr;
Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. Jang, MiHyun; Patted, Tejal; Gil, Yolanda; Garijo, Daniel; Ratnakar, Varun; Ji, Jie; Wang, Prince; McMahon, Aggie; Thompson, Paul M; Jahanshad, Neda CEUR workshop proceedings. 30034319 2017 Oct;
Selecting Optimal Subset to release under Differentially Private M-estimators from Hybrid Datasets. Wang, Meng; Ji, Zhanglong; Kim, Hyeon-Eui; Wang, Shuang; Xiong, Li; Jiang, Xiaoqian IEEE transactions on knowledge and data engineering. 30034201 2018 Mar 01;
Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans. Shiroishi, Mark S; Gupta, Vikash; Bigjahan, Bavrina; Cen, Steven Y; Rashid, Faisal; Hwang, Darryl H; Lerner, Alexander; Boyko, Orest B; Liu, Chia-Shang Jason; Law, Meng; Thompson, Paul M; Jahanshad, Neda Proceedings of SPIE--the International Society for Optical Engineering. 30034079 2017 Oct;
Using Virtual Reality to Improve Performance and User Experience in Manual Correction of MRI Segmentation Errors by Non-experts. Duncan, Dominique; Garner, Rachael; Zrantchev, Ivan; Ard, Tyler; Newman, Bradley; Saslow, Adam; Wanserski, Emily; Toga, Arthur W Journal of digital imaging 30030766 2019 02
Statistical considerations in reporting cardiovascular research. Lindsey, Merry L; Gray, Gillian A; Wood, Susan K; Curran-Everett, Douglas American journal of physiology. Heart and circulatory physiology. 30028200 2018 Aug 01;
MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES. Zhang, Jie; Tu, Yanshuai; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin Proceedings. IEEE International Symposium on Biomedical Imaging. 30023040 2018 Apr;
Comparison of privacy-protecting analytic and data-sharing methods: A simulation study. Yoshida, Kazuki; Gruber, Susan; Fireman, Bruce H; Toh, Sengwee Pharmacoepidemiology and drug safety. 30022561 2018 Sep;
Toward Increasing Engagement in Substance Use Data Collection: Development of the Substance Abuse Research Assistant App and Protocol for a Microrandomized Trial Using Adolescents and Emerging Adults. Rabbi, Mashfiqui; Philyaw Kotov, Meredith; Cunningham, Rebecca; Bonar, Erin E; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan JMIR research protocols. 30021714 2018 Jul 18;
Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass. Wang, Ana Y; Thuy-Boun, Peter S; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W Journal of proteome research. 30019906 2018 09 07;
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. Baheti, Saurabh; Tang, Xiaojia; O'Brien, Daniel R; Chia, Nicholas; Roberts, Lewis R; Nelson, Heidi; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Kocher, Jean-Pierre A; Kalari, Krishna R BMC bioinformatics. 30016933 2018 Jul 17;
Neural correlates of cognitive function and symptoms in attention-deficit/hyperactivity disorder in adults. Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Lin, Dongdong; Jiang, Wenhao; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, Jingyu NeuroImage. Clinical. 30013920 2018;
A synthetic-diploid benchmark for accurate variant-calling evaluation. Li, Heng; Bloom, Jonathan M; Farjoun, Yossi; Fleharty, Mark; Gauthier, Laura; Neale, Benjamin; MacArthur, Daniel Nature methods. 30013044 2018 Aug;
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. Bukhari, Syed Ahmad Chan; Martínez-Romero, Marcos; O' Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Cheung, Kei-Hoi; Kleinstein, Steven H BMC bioinformatics. 30012108 2018 Jul 16;
Quantitative temporal analysis of protein dynamics in cardiac remodeling. McClatchy, Daniel B; Ma, Yuanhui; Liem, David A; Ng, Dominic C M; Ping, Peipei; Yates 3rd, John R Journal of molecular and cellular cardiology. 30009778 2018 Aug;
SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol. Jiang, Yichen; Hamer, Jenny; Wang, Chenghong; Jiang, Xiaoqian; Kim, Miran; Song, Yongsoo; Xia, Yuhou; Mohammed, Noman; Sadat, Md Nazmus; Wang, Shuang IEEE/ACM transactions on computational biology and bioinformatics. 29994005 2019 Jan-Feb;
SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution. Sadat, Md Nazmus; Al Aziz, Md Momin; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Wang, Shuang IEEE/ACM transactions on computational biology and bioinformatics. 29993695 2019 Jan-Feb;
Visual Analytics in Deep Learning: An Interrogative Survey for the Next Frontiers. Hohman, Fred Matthew; Kahng, Minsuk; Pienta, Robert; Chau, Duen Horng IEEE transactions on visualization and computer graphics. 29993551 2018 Jun 04;
Imaging genetics in neurodevelopmental psychopathology. Klein, Marieke; van Donkelaar, Marjolein; Verhoef, Ellen; Franke, Barbara American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. 29984470 2017 07;
A Screening Rule for ?1-Regularized Ising Model Estimation. Kuang, Zhaobin; Geng, Sinong; Page, David Advances in neural information processing systems. 29983538 2017 Dec;
Risk Factors for Colistin Resistance among Gram-Negative Rods and Klebsiella pneumoniae Isolates. Richter, Stefan E; Miller, Loren; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A Journal of clinical microbiology 29976595 2018 09
Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. Saul, Michael C; Blatti, Charles; Yang, Wei; Bukhari, Syed A; Shpigler, Hagai Y; Troy, Joseph M; Seward, Christopher H; Sloofman, Laura; Chandrasekaran, Sriram; Bell, Alison M; Stubbs, Lisa; Robinson, Gene E; Zhao, Sihai D; Sinha, Saurabh Genes, brain, and behavior. 29968347 2018 Jul 02;
Cortical Brain Abnormalities in 4474 Individuals With Schizophrenia and 5098 Control Subjects via the Enhancing Neuro Imaging Genetics Through Meta Analysis (ENIGMA) Consortium. van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Bustillo, Juan R; Clark, Vincent P; Agartz, Ingrid; Mueller, Bryon A; Cahn, Wiepke; de Zwarte, Sonja M C; Hulshoff Pol, Hilleke E; Kahn, René S; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Dale, Anders M; Doan, Nhat Trung; Gurholt, Tiril P; Hartberg, Cecilie B; Haukvik, Unn K; Jørgensen, Kjetil N; Lagerberg, Trine V; Melle, Ingrid; Westlye, Lars T; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Zilles, David; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Carr, Vaughan J; Catts, Stanley; Cropley, Vanessa L; Fullerton, Janice M; Green, Melissa J; Henskens, Frans A; Jablensky, Assen; Lenroot, Rhoshel K; Mowry, Bryan J; Michie, Patricia T; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Morris, Derek W; Hong, Elliot; Kochunov, Peter; Beard, Lauren M; Gur, Raquel E; Gur, Ruben C; Satterthwaite, Theodore D; Wolf, Daniel H; Belger, Aysenil; Brown, Gregory G; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; O'Leary, Daniel S; Potkin, Steven G; Preda, Adrian; Voyvodic, James; Lim, Kelvin O; McEwen, Sarah; Yang, Fude; Tan, Yunlong; Tan, Shuping; Wang, Zhiren; Fan, Fengmei; Chen, Jingxu; Xiang, Hong; Tang, Shiyou; Guo, Hua; Wan, Ping; Wei, Dong; Bockholt, Henry J; Ehrlich, Stefan; Wolthusen, Rick P F; King, Margaret D; Shoemaker, Jody M; Sponheim, Scott R; De Haan, Lieuwe; Koenders, Laura; Machielsen, Marise W; van Amelsvoort, Therese; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; McKenna, Peter J; Pomarol-Clotet, Edith; Salvador, Raymond; Corvin, Aiden; Donohoe, Gary; Kelly, Sinead; Whelan, Christopher D; Dickie, Erin W; Rotenberg, David; Voineskos, Aristotle N; Ciufolini, Simone; Radua, Joaquim; Dazzan, Paola; Murray, Robin; Reis Marques, Tiago; Simmons, Andrew; Borgwardt, Stefan; Egloff, Laura; Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Wang, Lei; Jönsson, Erik G; Koops, Sanne; Sommer, Iris E C; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Stephen, Julia M; Kwon, Jun Soo; Yun, Je-Yeon; Cannon, Dara M; McDonald, Colm; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Busatto, Geraldo F; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; Hagenaars, Saskia P; McIntosh, Andrew M; Whalley, Heather C; Lawrie, Stephen M; Knöchel, Christian; Oertel-Knöchel, Viola; Stäblein, Michael; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; McMahon, Agnes; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A Biological psychiatry. 29960671 2018 May 14;
Prioritizing network communities. Zitnik, Marinka; Sosi?, Rok; Leskovec, Jure Nature communications. 29959323 2018 06 29;
SigMat: a classification scheme for gene signature matching. Xiao, Jinfeng; Blatti, Charles; Sinha, Saurabh Bioinformatics (Oxford, England). 29950002 2018 Jul 01;
Modeling polypharmacy side effects with graph convolutional networks. Zitnik, Marinka; Agrawal, Monica; Leskovec, Jure Bioinformatics (Oxford, England). 29949996 2018 07 01;
Talking the Walk: Perceptions of Neighborhood Characteristics from Users of Open Streets Programs in Latin America and the USA. Zieff, Susan G; Musselman, Elaine A; Sarmiento, Olga L; Gonzalez, Silvia A; Aguilar-Farias, Nicolas; Winter, Sandra J; Hipp, J Aaron; Quijano, Karoll; King, Abby C Journal of urban health : bulletin of the New York Academy of Medicine. 29948785 2018 Dec;
Significant concordance of genetic variation that increases both the risk for obsessive-compulsive disorder and the volumes of the nucleus accumbens and putamen. Hibar, Derrek P; Cheung, Joshua W; Medland, Sarah E; Mufford, Mary S; Jahanshad, Neda; Dalvie, Shareefa; Ramesar, Raj; Stewart, Evelyn; van den Heuvel, Odile A; Pauls, David L; Knowles, James A; Stein, Dan J; Thompson, Paul M; Enhancing Neuro Imaging Genetics through Meta Analysis (ENIGMA) Consortium and International Obsessive Compulsive Disorder Foundation Genetics Collaborative (IOCDF-GC) The British journal of psychiatry : the journal of mental science. 29947313 2018 Jul;
Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. Smit, Dirk J A; Wright, Margaret J; Meyers, Jacquelyn L; Martin, Nicholas G; Ho, Yvonne Y W; Malone, Stephen M; Zhang, Jian; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Denys, Damiaan; Hansell, Narelle K; Hottenga, Jouke-Jan; McGue, Matt; van Beijsterveldt, Catharina E M; Jahanshad, Neda; Thompson, Paul M; Whelan, Christopher D; Medland, Sarah E; Porjesz, Bernice; Lacono, William G; Boomsma, Dorret I Human brain mapping. 29947131 2018 Jun 26;
A design framework and exemplar metrics for FAIRness. Wilkinson, Mark D; Sansone, Susanna-Assunta; Schultes, Erik; Doorn, Peter; Bonino da Silva Santos, Luiz Olavo; Dumontier, Michel Scientific data. 29944145 2018 06 26;
Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. Savage, Jeanne E; Jansen, Philip R; Stringer, Sven; Watanabe, Kyoko; Bryois, Julien; de Leeuw, Christiaan A; Nagel, Mats; Awasthi, Swapnil; Barr, Peter B; Coleman, Jonathan R I; Grasby, Katrina L; Hammerschlag, Anke R; Kaminski, Jakob A; Karlsson, Robert; Krapohl, Eva; Lam, Max; Nygaard, Marianne; Reynolds, Chandra A; Trampush, Joey W; Young, Hannah; Zabaneh, Delilah; Hägg, Sara; Hansell, Narelle K; Karlsson, Ida K; Linnarsson, Sten; Montgomery, Grant W; Muñoz-Manchado, Ana B; Quinlan, Erin B; Schumann, Gunter; Skene, Nathan G; Webb, Bradley T; White, Tonya; Arking, Dan E; Avramopoulos, Dimitrios; Bilder, Robert M; Bitsios, Panos; Burdick, Katherine E; Cannon, Tyrone D; Chiba-Falek, Ornit; Christoforou, Andrea; Cirulli, Elizabeth T; Congdon, Eliza; Corvin, Aiden; Davies, Gail; Deary, Ian J; DeRosse, Pamela; Dickinson, Dwight; Djurovic, Srdjan; Donohoe, Gary; Conley, Emily Drabant; Eriksson, Johan G; Espeseth, Thomas; Freimer, Nelson A; Giakoumaki, Stella; Giegling, Ina; Gill, Michael; Glahn, David C; Hariri, Ahmad R; Hatzimanolis, Alex; Keller, Matthew C; Knowles, Emma; Koltai, Deborah; Konte, Bettina; Lahti, Jari; Le Hellard, Stephanie; Lencz, Todd; Liewald, David C; London, Edythe; Lundervold, Astri J; Malhotra, Anil K; Melle, Ingrid; Morris, Derek; Need, Anna C; Ollier, William; Palotie, Aarno; Payton, Antony; Pendleton, Neil; Poldrack, Russell A; Räikkönen, Katri; Reinvang, Ivar; Roussos, Panos; Rujescu, Dan; Sabb, Fred W; Scult, Matthew A; Smeland, Olav B; Smyrnis, Nikolaos; Starr, John M; Steen, Vidar M; Stefanis, Nikos C; Straub, Richard E; Sundet, Kjetil; Tiemeier, Henning; Voineskos, Aristotle N; Weinberger, Daniel R; Widen, Elisabeth; Yu, Jin; Abecasis, Goncalo; Andreassen, Ole A; Breen, Gerome; Christiansen, Lene; Debrabant, Birgit; Dick, Danielle M; Heinz, Andreas; Hjerling-Leffler, Jens; Ikram, M Arfan; Kendler, Kenneth S; Martin, Nicholas G; Medland, Sarah E; Pedersen, Nancy L; Plomin, Robert; Polderman, Tinca J C; Ripke, Stephan; van der Sluis, Sophie; Sullivan, Patrick F; Vrieze, Scott I; Wright, Margaret J; Posthuma, Danielle Nature genetics. 29942086 2018 Jul;
Fonduer: Knowledge Base Construction from Richly Formatted Data. NULL Proceedings. ACM-Sigmod International Conference on Management of Data. 29937618 2018 Jun;
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. Readhead, Ben; Haure-Mirande, Jean-Vianney; Funk, Cory C; Richards, Matthew A; Shannon, Paul; Haroutunian, Vahram; Sano, Mary; Liang, Winnie S; Beckmann, Noam D; Price, Nathan D; Reiman, Eric M; Schadt, Eric E; Ehrlich, Michelle E; Gandy, Sam; Dudley, Joel T Neuron. 29937276 2018 Jul 11;
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. Stathias, Vasileios; Koleti, Amar; Vidovi?, Du?ica; Cooper, Daniel J; Jagodnik, Kathleen M; Terryn, Raymond; Forlin, Michele; Chung, Caty; Torre, Denis; Ayad, Nagi; Medvedovic, Mario; Ma'ayan, Avi; Pillai, Ajay; Schürer, Stephan C Scientific data. 29917015 2018 Jun 19;
Ventromedial Prefrontal Volume in Adolescence Predicts Hyperactive/Inattentive Symptoms in Adulthood. Albaugh, Matthew D; Ivanova, Masha; Chaarani, Bader; Orr, Catherine; Allgaier, Nicholas; Althoff, Robert R; D' Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Penttilä, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra S Cerebral cortex (New York, N.Y. : 1991). 29912404 2019 05 01;
Reg-ulating macrophage infiltration to alter wound healing following myocardial infarction. Lindsey, Merry L Cardiovascular research. 29912288 2018 Oct 01;
A Hierarchical Framework for State-Space Matrix Inference and Clustering. Zuo, Chandler; Chen, Kailei; Hewitt, Kyle J; Bresnick, Emery H; Kele?, Sündüz The annals of applied statistics. 29910842 2016 Sep;
Causal Discovery from Temporally Aggregated Time Series. Gong, Mingming; Zhang, Kun; Schölkopf, Bernhard; Glymour, Clark; Tao, Dacheng Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. 29899680 2017 Aug;
Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation. Hanson, Casey; Cairns, Junmei; Wang, Liewei; Sinha, Saurabh Genome research. 29898900 2018 08;
Prompting Technology and Persons With Dementia: The Significance of Context and Communication. Braley, Rachel; Fritz, Rochelle; Van Son, Catherine R; Schmitter-Edgecombe, Maureen The Gerontologist 29897450 2019 01 09
Large-scale mapping of cortical alterations in 22q11.2 deletion syndrome: Convergence with idiopathic psychosis and effects of deletion size. Sun, Daqiang; Ching, Christopher R K; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Villalon-Reina, Julio E; Qu, Xiaoping; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Vorstman, Jacob; Fiksinski, Ania; Koops, Sanne; Ruparel, Kosha; Roalf, David R; Gur, Raquel E; Schmitt, J Eric; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Bassett, Anne S; Chow, Eva W C; Butcher, Nancy J; Vila-Rodriguez, Fidel; Doherty, Joanne; Cunningham, Adam; van den Bree, Marianne B M; Linden, David E J; Moss, Hayley; Owen, Michael J; Murphy, Kieran C; McDonald-McGinn, Donna M; Emanuel, Beverly; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Bearden, Carrie E Molecular psychiatry. 29895892 2018 Jun 13;
The initiation of cannabis use in adolescence is predicted by sex-specific psychosocial and neurobiological features. Spechler, Philip A; Allgaier, Nicholas; Chaarani, Bader; Whelan, Robert; Watts, Richard; Orr, Catherine; Albaugh, Matthew D; D'Alberto, Nicholas; Higgins, Stephen T; Hudson, Kelsey E; Mackey, Scott; Potter, Alexandra; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Althoff, Robert R; Garavan, Hugh; IMAGEN Consortium The European journal of neuroscience. 29889330 2019 08;
Network-based approaches to examining stress in the adolescent brain. Ho, Tiffany C; Dennis, Emily L; Thompson, Paul M; Gotlib, Ian H Neurobiology of stress. 29888310 2018 Feb;
A Crowdsourcing Framework for Medical Data Sets. Ye, Cheng; Coco, Joseph; Epishova, Anna; Hajaj, Chen; Bogardus, Henry; Novak, Laurie; Denny, Joshua; Vorobeychik, Yevgeniy; Lasko, Thomas; Malin, Bradley; Fabbri, Daniel AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888085 2018;
Utility of Genetic Testing in Addition to Mammography for Determining Risk of Breast Cancer Depends on Patient Age. Feld, Shara I; Fan, Jun; Yuan, Ming; Wu, Yirong; Woo, Kaitlin M; Alexandridis, Roxana; Burnside, Elizabeth S AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888046 2018;
Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data. Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Liu, Sijia; Liu, Hongfang; Jiang, Guoqian AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888045 2018;
Real-time Protection of Genomic Data Sharing in Beacon Services. Bu, Diyue; Wang, Xiaofeng; Tang, Haixu AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888039 2018;
What's in a Note? Unpacking Predictive Value in Clinical Note Representations. Boag, Willie; Doss, Dustin; Naumann, Tristan; Szolovits, Peter AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888035 2018;
Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation. Fiddes, Ian T; Armstrong, Joel; Diekhans, Mark; Nachtweide, Stefanie; Kronenberg, Zev N; Underwood, Jason G; Gordon, David; Earl, Dent; Keane, Thomas; Eichler, Evan E; Haussler, David; Stanke, Mario; Paten, Benedict Genome research. 29884752 ;
Multiple Testing of Submatrices of a Precision Matrix with Applications to Identification of Between Pathway Interactions. Xia, Yin; Cai, Tianxi; Cai, T Tony Journal of the American Statistical Association. 29881130 ;
High-resolution comparative analysis of great ape genomes. Kronenberg, Zev N; Fiddes, Ian T; Gordon, David; Murali, Shwetha; Cantsilieris, Stuart; Meyerson, Olivia S; Underwood, Jason G; Nelson, Bradley J; Chaisson, Mark J P; Dougherty, Max L; Munson, Katherine M; Hastie, Alex R; Diekhans, Mark; Hormozdiari, Fere Science (New York, N.Y.). 29880660 ;
Predicting Adverse Drug Effects from Literature- and Database-Mined Assertions. La, Mary K; Sedykh, Alexander; Fourches, Denis; Muratov, Eugene; Tropsha, Alexander Drug safety. 29876834 2018 Jun 06;
Data Programming: Creating Large Training Sets, Quickly. Ratner, Alexander; De Sa, Christopher; Wu, Sen; Selsam, Daniel; Ré, Christopher Advances in neural information processing systems. 29872252 2016 Dec;
Mapping macrophage polarization over the myocardial infarction time continuum. Mouton, Alan J; DeLeon-Pennell, Kristine Y; Rivera Gonzalez, Osvaldo J; Flynn, Elizabeth R; Freeman, Tom C; Saucerman, Jeffrey J; Garrett, Michael R; Ma, Yonggang; Harmancey, Romain; Lindsey, Merry L Basic research in cardiology. 29868933 2018 Jun 04;
Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, Jaideep IEEE internet computing. 29867290 2018 Mar-Apr;
Acute changes in foot strike pattern and cadence affect running parameters associated with tibial stress fractures. Yong, Jennifer R; Silder, Amy; Montgomery, Kate L; Fredericson, Michael; Delp, Scott L Journal of biomechanics. 29866518 2018 Jul 25;
The Added Value of Diffusion-Weighted MRI-Derived Structural Connectome in Evaluating Mild Cognitive Impairment: A Multi-Cohort Validation1. Wang, Qi; Guo, Lei; Thompson, Paul M; Jack, Clifford R; Dodge, Hiroko; Zhan, Liang; Zhou, Jiayu; Alzheimer?s Disease Neuroimaging Initiative and National Alzheimer?s Coordinating Center Journal of Alzheimer's disease : JAD. 29865049 2018;
Big data sharing and analysis to advance research in post-traumatic epilepsy. Duncan, Dominique; Vespa, Paul; Pitkänen, Asla; Braimah, Adebayo; Lapinlampi, Niina; Toga, Arthur W Neurobiology of disease. 29864492 2018 Jun 01;
Quantifying the Impact of Rare and Ultra-rare Coding Variation across the Phenotypic Spectrum. Ganna, Andrea; Satterstrom, F Kyle; Zekavat, Seyedeh M; Das, Indraniel; Kurki, Mitja I; Churchhouse, Claire; Alfoldi, Jessica; Martin, Alicia R; Havulinna, Aki S; Byrnes, Andrea; Thompson, Wesley K; Nielsen, Philip R; Karczewski, Konrad J; Saarentaus, Elm American journal of human genetics. 29861106 2018 Jun 07;
Association between inflammation and systolic blood pressure in RA compared to patients without RA. Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine P Arthritis research & therapy. 29855349 2018 Jun 01;
SCOTCH: Secure Counting Of encrypTed genomiC data using a Hybrid approach. Chenghong, Wang; Jiang, Yichen; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Al Aziz, Md Momin; Sadat, Md Nazmus; Wang, Shuang AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854245 2017;
A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, Lucila AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854240 2017;
Mining Hierarchies and Similarity Clusters from Value Set Repositories. Peterson, Kevin J; Jiang, Guoqian; Brue, Scott M; Shen, Feichen; Liu, Hongfang AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854206 2017;
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark A AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854196 2017;
Framing Electronic Medical Records as Polylingual Documents in Query Expansion. Huang, Edward W; Wang, Sheng; Lee, Doris Jung-Lin; Zhang, Runshun; Liu, Baoyan; Zhou, Xuezhong; Zhai, ChengXiang AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854161 2017;
Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms. Can, Anil; Rudy, Robert F; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose Stroke. 29844027 2018 Jul;
Multi-Descriptor Read Across (MuDRA): A Simple and Transparent Approach for Developing Accurate Quantitative Structure-Activity Relationship Models. Alves, Vinicius M; Golbraikh, Alexander; Capuzzi, Stephen J; Liu, Kammy; Lam, Wai In; Korn, Daniel Robert; Pozefsky, Diane; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, Alexander Journal of chemical information and modeling. 29809005 2018 06 25;
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks. Clarke, Daniel J B; Kuleshov, Maxim V; Schilder, Brian M; Torre, Denis; Duffy, Mary E; Keenan, Alexandra B; Lachmann, Alexander; Feldmann, Axel S; Gundersen, Gregory W; Silverstein, Moshe C; Wang, Zichen; Ma'ayan, Avi Nucleic acids research. 29800326 2018 Jul 02;
Progress Toward Cancer Data Ecosystems. Grossman, Robert L Cancer journal (Sudbury, Mass.). 29794537 2018 May/Jun;
Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews. Cheng Ye, M S; Fabbri, Daniel Journal of biomedical informatics. 29793071 ;
A Flow Procedure for Linearization of Genome Sequence Graphs. Haussler, David; Smuga-Otto, Maciej; Eizenga, Jordan M; Paten, Benedict; Novak, Adam M; Nikitin, Sergei; Zueva, Maria; Miagkov, Dmitrii Journal of computational biology : a journal of computational molecular cell biology. 29792514 2018 07;
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). Lill, Jennie R; van Veelen, Peter A; Tenzer, Stefan; Admon, Arie; Caron, Etienne; Elias, Joshua E; Heck, Albert J R; Marcilla, Miguel; Marino, Fabio; Müller, Markus; Peters, Bjoern; Purcell, Anthony; Sette, Alessandro; Sturm, Theo; Ternette, Nicola; Vizca Proteomics. 29791771 2018 Jun;
PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine P Journal of the American Medical Informatics Association : JAMIA. 29788308 2018 10 01;
Stressful Life Events, ADHD Symptoms, and Brain Structure in Early Adolescence. Humphreys, Kathryn L; Watts, Emily L; Dennis, Emily L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H Journal of abnormal child psychology. 29785533 2018 May 21;
Classifying Alzheimer's disease with brain imaging and genetic data using a neural network framework. Ning, Kaida; Chen, Bo; Sun, Fengzhu; Hobel, Zachary; Zhao, Lu; Matloff, Will; Alzheimer's Disease Neuroimaging Initiative; Toga, Arthur W Neurobiology of aging. 29784544 2018 Aug;
Weighted SGD for ? p Regression with Randomized Preconditioning. Yang, Jiyan; Chow, Yin-Lam; Ré, Christopher; Mahoney, Michael W Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. 29782626 2016 Jan;
I'll Be Back: On the Multiple Lives of Users of a Mobile Activity Tracking Application. Lin, Zhiyuan; Althoff, Tim; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 29780978 2018 Apr;
Modeling Interdependent and Periodic Real-World Action Sequences. Kurashima, Takeshi; Althoff, Tim; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 29780977 2018 Apr;
Modeling Individual Cyclic Variation in Human Behavior. Pierson, Emma; Althoff, Tim; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 29780976 2018 Apr;
The Selective Labels Problem: Evaluating Algorithmic Predictions in the Presence of Unobservables. Lakkaraju, Himabindu; Kleinberg, Jon; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29780658 2017 Aug;
Development of an Algorithm to Identify Patients with Physician-Documented Insomnia. Kartoun, Uri; Aggarwal, Rahul; Beam, Andrew L; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Kohane, Isaac S; Shaw, Stanley Y Scientific reports. 29777125 2018 May 18;
Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology. Bae, J Alexander; Mu, Shang; Kim, Jinseop S; Turner, Nicholas L; Tartavull, Ignacio; Kemnitz, Nico; Jordan, Chris S; Norton, Alex D; Silversmith, William M; Prentki, Rachel; Sorek, Marissa; David, Celia; Jones, Devon L; Bland, Doug; Sterling, Amy L R; Park, Jungman; Briggman, Kevin L; Seung, H Sebastian; Eyewirers Cell. 29775596 2018 05 17;
Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease. Liem, David A; Murali, Sanjana; Sigdel, Dibakar; Shi, Yu; Wang, Xuan; Shen, Jiaming; Choi, Howard; Caufield, John H; Wang, Wei; Ping, Peipei; Han, JiaWei American journal of physiology. Heart and circulatory physiology. 29775406 2018 Oct 01;
The Mouse Heart Attack Research Tool 1.0 database. DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ma, Yonggang; Yabluchanskiy, Andriy; Zamilpa, Rogelio; Chiao, Ying Ann; Cannon, Presley L; Kaplan, Abdullah; Cates, Courtney A; Flynn, Elizabeth R; Halade, Ganesh V; de Castro Brás, Lisandra E; Lindse American journal of physiology. Heart and circulatory physiology. 29775405 2018 Sep 01;
Local Higher-Order Graph Clustering. Yin, Hao; Benson, Austin R; Leskovec, Jure; Gleich, David F KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29770258 ;
Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data. Hallac, David; Vare, Sagar; Boyd, Stephen; Leskovec, Jure KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29770257 ;
Network Inference via the Time-Varying Graphical Lasso. Hallac, David; Park, Youngsuk; Boyd, Stephen; Leskovec, Jure KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29770256 ;
Snorkel: Rapid Training Data Creation with Weak Supervision. Ratner, Alexander; Bach, Stephen H; Ehrenberg, Henry; Fries, Jason; Wu, Sen; Ré, Christopher Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 29770249 ;
Population-Scale Pervasive Health. Althoff, Tim IEEE pervasive computing. 29770105 Oct-Dec 2017
Privacy-Preserving Predictive Modeling: Harmonization of Contextual Embeddings From Different Sources. Huang, Yingxiang; Lee, Junghye; Wang, Shuang; Sun, Jimeng; Liu, Hongfang; Jiang, Xiaoqian JMIR medical informatics 29769172 2018 May 16
Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium. Kong, Xiang-Zhen; Mathias, Samuel R; Guadalupe, Tulio; ENIGMA Laterality Working Group; Glahn, David C; Franke, Barbara; Crivello, Fabrice; Tzourio-Mazoyer, Nathalie; Fisher, Simon E; Thompson, Paul M; Francks, Clyde Proceedings of the National Academy of Sciences of the United States of America. 29764998 ;
Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. Grove, Christian; Cain, Scott; Chen, Wen J; Davis, Paul; Harris, Todd; Howe, Kevin L; Kishore, Ranjana; Lee, Raymond; Paulini, Michael; Raciti, Daniela; Tuli, Mary Ann; Van Auken, Kimberly; Williams, Gary; WormBase Consortium Methods in molecular biology (Clifton, N.J.). 29761466 2018;
ERMrest: A Collaborative Data Catalog with Fine Grain Access Control. Czajkowski, Karl; Kesselman, Carl; Schuler, Robert Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. 29756002 2017 Oct;
Experiences with Deriva: An Asset Management Platform for Accelerating eScience. Bugacov, Alejandro; Czajkowski, Karl; Kesselman, Carl; Kumar, Anoop; Schuler, Robert E; Tangmunarunkit, Hongsuda Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. 29756001 2017 Oct;
Pharmacovigilance via Baseline Regularization with Large-Scale Longitudinal Observational Data. Kuang, Zhaobin; Peissig, Peggy; Costa, Vítor Santos; Maclin, Richard; Page, David KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29755826 2017 Aug;
A Constraint Optimization Approach to Causal Discovery from Subsampled Time Series Data. Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, David International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. 29755201 2017 Nov;
HUMAN DECISIONS AND MACHINE PREDICTIONS. Kleinberg, Jon; Lakkaraju, Himabindu; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil The quarterly journal of economics. 29755141 2018 Feb 01;
Assigning matrix metalloproteinase roles in ischaemic cardiac remodelling. Lindsey, Merry L Nature reviews. Cardiology. 29752454 2018 May 11;
Magnetic resonance spectroscopy of fiber tracts in children with traumatic brain injury: A combined MRS - Diffusion MRI study. Dennis, Emily L; Babikian, Talin; Alger, Jeffry; Rashid, Faisal; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F Human brain mapping. 29749094 2018 May 10;
Diverse reprogramming codes for neuronal identity. Tsunemoto, Rachel; Lee, Sohyon; Sz?cs, Attila; Chubukov, Pavel; Sokolova, Irina; Blanchard, Joel W; Eade, Kevin T; Bruggemann, Jacob; Wu, Chunlei; Torkamani, Ali; Sanna, Pietro Paolo; Baldwin, Kristin K Nature. 29743677 2018 05;
A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. Zhao, Yongan; Wang, Xiaofeng; Tang, Haixu Journal of computational biology : a journal of computational molecular cell biology. 29741956 2018 06;
Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease. Gao, Chao; Sun, Hanbo; Wang, Tuo; Tang, Ming; Bohnen, Nicolaas I; Müller, Martijn L T M; Herman, Talia; Giladi, Nir; Kalinin, Alexandr; Spino, Cathie; Dauer, William; Hausdorff, Jeffrey M; Dinov, Ivo D Scientific reports. 29740058 2018 05 08;
Uniform resolution of compact identifiers for biomedical data. Wimalaratne, Sarala M; Juty, Nick; Kunze, John; Janée, Greg; McMurry, Julie A; Beard, Niall; Jimenez, Rafael; Grethe, Jeffrey S; Hermjakob, Henning; Martone, Maryann E; Clark, Tim Scientific data. 29737976 2018 05 08;
Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization. Ponzoni, Luca; Zhang, She; Cheng, Mary Hongying; Bahar, Ivet Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 29735731 2018 06 19;
Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Mulugeta, Lealem; Drach, Andrew; Erdemir, Ahmet; Hunt, C A; Horner, Marc; Ku, Joy P; Myers Jr, Jerry G; Vadigepalli, Rajanikanth; Lytton, William W Frontiers in neuroinformatics. 29713272 2018;
Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. Agniel, Denis; Kohane, Isaac S; Weber, Griffin M BMJ (Clinical research ed.). 29712648 2018 04 30;
Quantifying predictive capability of electronic health records for the most harmful breast cancer. Wu, Yirong; Fan, Jun; Peissig, Peggy; Berg, Richard; Tafti, Ahmad Pahlavan; Yin, Jie; Yuan, Ming; Page, David; Cox, Jennifer; Burnside, Elizabeth S Proceedings of SPIE--the International Society for Optical Engineering. 29706685 2018 Feb;
A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. NULL Scientific reports. 29700343 2018 Apr 26;
Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine. NULL Circulation research. 29700073 2018 Apr 27;
Personal Omics for Precision Health. Kellogg, Ryan A; Dunn, Jessilyn; Snyder, Michael P Circulation research. 29700064 2018 04 27;
Deep learning in pharmacogenomics: from gene regulation to patient stratification. Kalinin, Alexandr A; Higgins, Gerald A; Reamaroon, Narathip; Soroushmehr, Sayedmohammadreza; Allyn-Feuer, Ari; Dinov, Ivo D; Najarian, Kayvan; Athey, Brian D Pharmacogenomics. 29697304 2018 05;
Testing associations between cannabis use and subcortical volumes in two large population-based samples. Gillespie, Nathan A; Neale, Michael C; Bates, Timothy C; Eyler, Lisa T; Fennema-Notestine, Christine; Vassileva, Jasmin; Lyons, Michael J; Prom-Wormley, Elizabeth C; McMahon, Katie L; Thompson, Paul M; de Zubicaray, Greig; Hickie, Ian B; McGrath, John J; Strike, Lachlan T; Rentería, Miguel E; Panizzon, Matthew S; Martin, Nicholas G; Franz, Carol E; Kremen, William S; Wright, Margaret J Addiction (Abingdon, England). 29691937 2018 Apr 24;
Micropublication: incentivizing community curation and placing unpublished data into the public domain. Raciti, Daniela; Yook, Karen; Harris, Todd W; Schedl, Tim; Sternberg, Paul W Database : the journal of biological databases and curation. 29688367 2018 01 01;
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. Vita, Randi; Overton, James A; Mungall, Christopher J; Sette, Alessandro; Peters, Bjoern Database : the journal of biological databases and curation. 29688354 2018 01 01;
Multimodal Teaching Analytics: Automated Extraction of Orchestration Graphs from Wearable Sensor Data. Prieto, Luis P; Sharma, Kshitij; Kidzinski, ?ukasz; Rodríguez-Triana, María Jesús; Dillenbourg, Pierre Journal of computer assisted learning. 29686446 2018 Apr;
SeleCon: Scalable IoT Device Selection and Control Using Hand Gestures. Alanwar, Amr; Alzantot, Moustafa; Ho, Bo-Jhang; Martin, Paul; Srivastava, Mani IoTDI 2017 : 2017 IEEE/ACM Second International Conference on Internet-of-Things Design and Implementation : proceedings : 18-20 April 2017, Pittsburgh, Pennsylvania, USA. IoTDI (Conference) (2nd : 2017 : Pittsburgh, Pa.). 29683151 2017 Apr;
Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation. Kim, Miran; Song, Yongsoo; Wang, Shuang; Xia, Yuhou; Jiang, Xiaoqian JMIR medical informatics. 29666041 2018 Apr 17;
Individual differences in stop-related activity are inflated by the adaptive algorithm in the stop signal task. D'Alberto, Nicholas; Chaarani, Bader; Orr, Catherine A; Spechler, Philip A; Albaugh, Matthew D; Allgaier, Nicholas; Wonnell, Alexander; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Itterman, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Robbins, Trevor W; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh Human brain mapping. 29656430 2018 Apr 15;
Effects of green tea on miRNA and microbiome of oral epithelium. Adami, Guy R; Tangney, Christy C; Tang, Jessica L; Zhou, Yalu; Ghaffari, Saba; Naqib, Ankur; Sinha, Saurabh; Green, Stefan J; Schwartz, Joel L Scientific reports. 29651001 2018 Apr 12;
Whole Brain Magnetic Resonance Spectroscopic Determinants of Functional Outcomes in Pediatric Moderate/Severe Traumatic Brain Injury. Babikian, Talin; Alger, Jeffry R; Ellis-Blied, Monica U; Giza, Christopher C; Dennis, Emily; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeff; Thompson, Paul M; Asarnow, Robert F Journal of neurotrauma. 29649959 2018 07 15;
Massive mining of publicly available RNA-seq data from human and mouse. Lachmann, Alexander; Torre, Denis; Keenan, Alexandra B; Jagodnik, Kathleen M; Lee, Hoyjin J; Wang, Lily; Silverstein, Moshe C; Ma'ayan, Avi Nature communications. 29636450 ;
SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications. Kalinin, Alexandr A; Palanimalai, Selvam; Dinov, Ivo D Proceedings of the 2nd Workshop on Human-In-the-Loop Data Analytics. Workshop on Human-In-the-Loop Data Analytics (2nd : 2017 : Chicago, Ill.). 29630069 2017 Apr;
CIDER: Enhancing the Performance of Computational Eyeglasses. Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, Deepak Proceedings. Eye Tracking Research & Applications Symposium. 29629433 2016 Mar;
Emu: Engagement Modeling for User Studies. Ho, Bo-Jhang; Nikzad, Nima; Balaji, Bharathan; Srivastava, Mani Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 29629432 2017 Sep;
RSTensorFlow: GPU Enabled TensorFlow for Deep Learning on Commodity Android Devices. Alzantot, Moustafa; Wang, Yingnan; Ren, Zhengshuang; Srivastava, Mani B MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. 29629431 2017 Jun;
Using Smart City Technology to Make Healthcare Smarter. Cook, Diane J; Duncan, Glen; Sprint, Gina; Fritz, Roschelle Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. 29628528 2018 Apr;
Computer-Aided Discovery and Characterization of Novel Ebola Virus Inhibitors. Capuzzi, Stephen J; Sun, Wei; Muratov, Eugene N; Martínez-Romero, Carles; He, Shihua; Zhu, Wenjun; Li, Hao; Tawa, Gregory; Fisher, Ethan G; Xu, Miao; Shinn, Paul; Qiu, Xiangguo; García-Sastre, Adolfo; Zheng, Wei; Tropsha, Alexander Journal of medicinal chemistry. 29624387 2018 04 26;
Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture. Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose Stroke. 29622625 2018 May;
Ketamine and ketamine metabolites as novel estrogen receptor ligands: Induction of cytochrome P450 and AMPA glutamate receptor gene expression. Ho, Ming-Fen; Correia, Cristina; Ingle, James N; Kaddurah-Daouk, Rima; Wang, Liewei; Kaufmann, Scott H; Weinshilboum, Richard M Biochemical pharmacology. 29621538 2018 Jun;
Content Is King: Databases Preserve the Collective Information of Science. Yates 3rd, John R Journal of biomolecular techniques : JBT. 29618955 2018 Apr;
Opportunities and obstacles for deep learning in biology and medicine. Ching, Travers; Himmelstein, Daniel S; Beaulieu-Jones, Brett K; Kalinin, Alexandr A; Do, Brian T; Way, Gregory P; Ferrero, Enrico; Agapow, Paul-Michael; Zietz, Michael; Hoffman, Michael M; Xie, Wei; Rosen, Gail L; Lengerich, Benjamin J; Israeli, Johnny; L Journal of the Royal Society, Interface. 29618526 2018 Apr;
Cell-centred meta-analysis reveals baseline predictors of anti-TNF? non-response in biopsy and blood of patients with IBD. Gaujoux, Renaud; Starosvetsky, Elina; Maimon, Naama; Vallania, Francesco; Bar-Yoseph, Haggai; Pressman, Sigal; Weisshof, Roni; Goren, Idan; Rabinowitz, Keren; Waterman, Matti; Yanai, Henit; Dotan, Iris; Sabo, Edmond; Chowers, Yehuda; Khatri, Purvesh; Shen-Orr, Shai S; Israeli IBD research Network (IIRN) Gut. 29618496 2019 04;
Magnetic resonance imaging does not reveal structural alterations in the brain of grapheme-color synesthetes. Dojat, Michel; Pizzagalli, Fabrizio; Hupé, Jean-Michel PloS one. 29617401 2018;
Presurgical localization and spatial shift of resting state networks in patients with brain metastases. Ding, Ju-Rong; Zhu, Fangmei; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Thompson, Paul M Brain imaging and behavior. 29611075 2018 Apr 02;
Structural dynamics is a determinant of the functional significance of missense variants. Ponzoni, Luca; Bahar, Ivet Proceedings of the National Academy of Sciences of the United States of America. 29610305 2018 Apr 17;
Implementing Wearable Sensors for Continuous Assessment of Daytime Heart Rate Response in Inpatient Rehabilitation. Weeks, Douglas L; Sprint, Gina L; Stilwill, Virgeen; Meisen-Vehrs, Amy Lou; Cook, Diane J Telemedicine journal and e-health : the official journal of the American Telemedicine Association. 29608421 2018 Apr 02;
Binary Classifier Calibration Using an Ensemble of Piecewise Linear Regression Models. Naeini, Mahdi Pakdaman; Cooper, Gregory F Knowledge and information systems. 29606784 2018 Jan;
Physical activity is associated with changes in knee cartilage microstructure. Halilaj, E; Hastie, T J; Gold, G E; Delp, S L Osteoarthritis and cartilage. 29605382 2018 Jun;
Optimizing Digital Integrated Care via Micro-Randomized Trials. Walton, Ashley; Nahum-Shani, Inbal; Crosby, Lori; Klasnja, Predrag; Murphy, Susan Clinical pharmacology and therapeutics. 29604043 2018 Mar 31;
SnapVX: A Network-Based Convex Optimization Solver. Hallac, David; Wong, Christopher; Diamond, Steven; Sharang, Abhijit; Sosi?, Rok; Boyd, Stephen; Leskovec, Jure Journal of machine learning research : JMLR. 29599649 2017;
Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines. Ellrott, Kyle; Bailey, Matthew H; Saksena, Gordon; Covington, Kyle R; Kandoth, Cyriac; Stewart, Chip; Hess, Julian; Ma, Singer; Chiotti, Kami E; McLellan, Michael; Sofia, Heidi J; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li; MC3 Working Group; Cancer Genome Atlas Research Network Cell systems. 29596782 2018 Mar 28;
Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression. Wilson, Ander; Zigler, Corwin M; Patel, Chirag J; Dominici, Francesca Biometrics. 29569228 2018 09;
Genetic Drivers of Pancreatic Islet Function. Keller, Mark P; Gatti, Daniel M; Schueler, Kathryn L; Rabaglia, Mary E; Stapleton, Donnie S; Simecek, Petr; Vincent, Matthew; Allen, Sadie; Broman, Aimee Teo; Bacher, Rhonda; Kendziorski, Christina; Broman, Karl W; Yandell, Brian S; Churchill, Gary A; Att Genetics. 29567659 2018 05;
Interaction between striatal volume and DAT1 polymorphism predicts working memory development during adolescence. Nemmi, F; Nymberg, C; Darki, F; Banaschewski, T; Bokde, A L W; Büchel, C; Flor, H; Frouin, V; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Nees, F; Paus, T; Smolka, M N; Robbins, T W; Schumann, G; Klingberg, T; IMAGEN consortium Developmental cognitive neuroscience. 29567584 2018 04;
Biomedical informatics and machine learning for clinical genomics. Diao, James A; Kohane, Isaac S; Manrai, Arjun K Human molecular genetics. 29566172 2018 May 01;
QSAR-Driven Design and Discovery of Novel Compounds With Antiplasmodial and Transmission Blocking Activities. Lima, Marilia N N; Melo-Filho, Cleber C; Cassiano, Gustavo C; Neves, Bruno J; Alves, Vinicius M; Braga, Rodolpho C; Cravo, Pedro V L; Muratov, Eugene N; Calit, Juliana; Bargieri, Daniel Y; Costa, Fabio T M; Andrade, Carolina H Frontiers in pharmacology. 29559909 2018;
PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets. Martínez-Bartolomé, Salvador; Medina-Aunon, J Alberto; López-García, Miguel Ángel; González-Tejedo, Carmen; Prieto, Gorka; Navajas, Rosana; Salazar-Donate, Emilio; Fernández-Costa, Carolina; Yates 3rd, John R; Albar, Juan Pablo Journal of proteome research. 29558135 2018 04 06;
Extending the Construct Network of Trait Disinhibition to the Neuroimaging Domain: Validation of a Bridging Scale for Use in the European IMAGEN Project. Brislin, Sarah J; Patrick, Christopher J; Flor, Herta; Nees, Frauke; Heinrich, Angela; Drislane, Laura E; Yancey, James R; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; van Noort, Betteke; Grimmer, Yvonne; Fadai, Tahmine; Schumann, Gunter; Foell, Jens Assessment. 29557190 2019 06;
Linear assembly of a human centromere on the Y chromosome. Jain, Miten; Olsen, Hugh E; Turner, Daniel J; Stoddart, David; Bulazel, Kira V; Paten, Benedict; Haussler, David; Willard, Huntington F; Akeson, Mark; Miga, Karen H Nature biotechnology. 29553574 2018 Mar 19;
Predicting Daily Activities From Egocentric Images Using Deep Learning. Castro, Daniel; Hickson, Steven; Bettadapura, Vinay; Thomaz, Edison; Abowd, Gregory; Christensen, Henrik; Essa, Irfan Proceedings. International Symposium on Wearable Computers. 29553145 2015 Aug;
Developing Optimized Adaptive Interventions in Education. Almirall, Daniel; Kasari, Connie; McCaffrey, Daniel F; Nahum-Shani, Inbal Journal of research on educational effectiveness. 29552270 2018;
Emotional Processing in Obsessive-Compulsive Disorder: A Systematic Review and Meta-analysis of 25 Functional Neuroimaging Studies. Thorsen, Anders Lillevik; Hagland, Pernille; Radua, Joaquim; Mataix-Cols, David; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile A Biological psychiatry. Cognitive neuroscience and neuroimaging. 29550459 2018 Feb 03;
Adding Reg3? to the acute coronary syndrome prognostic marker list. Lindsey, Merry L; Mouton, Alan J; Ma, Yonggang International journal of cardiology. 29544938 2018 05 01;
Anytime Exploration for Multi-armed Bandits using Confidence Information. Jun, Kwang-Sung; Nowak, Robert JMLR workshop and conference proceedings. 29541329 2016 Jun;
Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters. Sweeney, Timothy E; Azad, Tej D; Donato, Michele; Haynes, Winston A; Perumal, Thanneer M; Henao, Ricardo; Bermejo-Martin, Jesús F; Almansa, Raquel; Tamayo, Eduardo; Howrylak, Judith A; Choi, Augustine; Parnell, Grant P; Tang, Benjamin; Nichols, Marshall; Woods, Christopher W; Ginsburg, Geoffrey S; Kingsmore, Stephen F; Omberg, Larsson; Mangravite, Lara M; Wong, Hector R; Tsalik, Ephraim L; Langley, Raymond J; Khatri, Purvesh Critical care medicine. 29537985 2018 Mar 13;
A Practical Approach for Recognizing Eating Moments with Wrist-Mounted Inertial Sensing. Thomaz, Edison; Essa, Irfan; Abowd, Gregory D Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 29520397 2015 Sep;
Discovery of Causal Models that Contain Latent Variables through Bayesian Scoring of Independence Constraints. Jabbari, Fattaneh; Ramsey, Joseph; Spirtes, Peter; Cooper, Gregory Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). 29520396 2017 Sep;
Chronodes: Interactive Multifocus Exploration of Event Sequences. Polack JR., Peter J; Chen, Shang-Tse; Kahng, Minsuk; DE Barbaro, Kaya; Basole, Rahul; Sharmin, Moushumi; Chau, Duen Horng ACM transactions on interactive intelligent systems. 29515937 2018 Feb;
RNA expression profiling in sulfamethoxazole-treated patients with a range of in vitro lymphocyte cytotoxicity phenotypes. Reinhart, Jennifer M; Rose, Warren; Panyard, Daniel J; Newton, Michael A; Liebenstein, Tyler K; Yee, Jeremiah; Trepanier, Lauren A Pharmacology research & perspectives. 29511567 2018 04;
Susceptibility of brain atrophy toTRIB3in Alzheimer's disease, evidence from functional prioritization in imaging genetics. Lorenzi, Marco; Altmann, Andre; Gutman, Boris; Wray, Selina; Arber, Charles; Hibar, Derrek P; Jahanshad, Neda; Schott, Jonathan M; Alexander, Daniel C; Thompson, Paul M; Ourselin, Sebastien; Alzheimer?s Disease Neuroimaging Initiative Proceedings of the National Academy of Sciences of the United States of America. 29511103 2018 Mar 20;
Some methods for heterogeneous treatment effect estimation in high dimensions. Powers, Scott; Qian, Junyang; Jung, Kenneth; Schuler, Alejandro; Shah, Nigam H; Hastie, Trevor; Tibshirani, Robert Statistics in medicine. 29508417 2018 May 20;
Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation. Sadat, Md Nazmus; Jiang, Xiaoqian; Aziz, Md Momin Al; Wang, Shuang; Mohammed, Noman JMIR medical informatics. 29506966 2018 Mar 05;
Exploring Symmetric and Asymmetric Bimanual Eating Detection with Inertial Sensors on the Wrist. Thomaz, Edison; Bedri, Abdelkareem; Prioleau, Temiloluwa; Essa, Irfan; Abowd, Gregory D DigitalBiomarkers'17 : proceedings of the 1st Workshop on Digital Biomarkers : June 23, 2017, Niagara Falls, NY, USA. Workshop on Digital Biomarkers (1st : 2017 : Niagara Falls, N.Y.). 29505038 2017 Jul;
SARA: A Mobile App to Engage Users in Health Data Collection. Rabbi, Mashfiqui; Philyaw-Kotov, Meredith; Lee, Jinseok; Mansour, Anthony; Dent, Laura; Wang, Xiaolei; Cunningham, Rebecca; Bonar, Erin; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 29503985 2017 Sep;
From Pressure to Path: Barometer-based Vehicle Tracking. Ho, Bo-Jhang; Martin, Paul; Swaminathan, Prashanth; Srivastava, Mani BuildSys'15 : proceedings of the 2nd ACM International Conference on Embedded Systems for Energy-Efficient Buildings : November 4-5, 2015, Seoul, South Korea. ACM Conference on Embedded Systems for Energy-Efficient Buildings (2nd : 2015.... 29503981 2015 Nov;
Survival models and health sequences. Dempsey, Walter; McCullagh, Peter Lifetime data analysis. 29502184 2018 Mar 03;
Neuroimaging of the Injured Pediatric Brain: Methods and New Lessons. Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. 29488436 ;
Exploring applications of crowdsourcing to cryo-EM. Bruggemann, Jacob; Lander, Gabriel C; Su, Andrew I Journal of structural biology. 29486249 2018 Jul;
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses. Torre, Denis; Krawczuk, Patrycja; Jagodnik, Kathleen M; Lachmann, Alexander; Wang, Zichen; Wang, Lily; Kuleshov, Maxim V; Ma'ayan, Avi Scientific data. 29485625 2018 Feb 27;
Comment. Reiss, Philip T; Goldsmith, Jeff Journal of the American Statistical Association. 29479124 2017;
Assessing the Practice of Biomedical Ontology Evaluation: Gaps and Opportunities. Amith, Muhammad F; He, Zhe; Bian, Jiang; Antonio Lossio-Ventura, Juan; Tao, Cui Journal of biomedical informatics. 29462669 2018 Feb 17;
Superbubbles, Ultrabubbles, and Cacti. Paten, Benedict; Eizenga, Jordan M; Rosen, Yohei M; Novak, Adam M; Garrison, Erik; Hickey, Glenn Journal of computational biology : a journal of computational molecular cell biology. 29461862 2018 Feb 20;
Learning Activity Predictors from Sensor Data: Algorithms, Evaluation, and Applications. Minor, Bryan; Doppa, Janardhan Rao; Cook, Diane J IEEE transactions on knowledge and data engineering. 29456436 2017 Dec 01;
A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations. Toor, Jugmohit S; Rao, Arjun A; McShan, Andrew C; Yarmarkovich, Mark; Nerli, Santrupti; Yamaguchi, Karissa; Madejska, Ada A; Nguyen, Son; Tripathi, Sarvind; Maris, John M; Salama, Sofie R; Haussler, David; Sgourakis, Nikolaos G Frontiers in immunology. 29441070 2018;
Quantitative high-throughput phenotypic screening of pediatric cancer cell lines identifies multiple opportunities for drug repurposing. Shen, Min; Asawa, Rosita; Zhang, Ya-Qin; Cunningham, Elizabeth; Sun, Hongmao; Tropsha, Alexander; Janzen, William P; Muratov, Eugene N; Capuzzi, Stephen J; Farag, Sherif; Jadhav, Ajit; Blatt, Julie; Simeonov, Anton; Martinez, Natalia J Oncotarget. 29435139 2018 Jan 12;
Nanopore sequencing and assembly of a human genome with ultra-long reads. Jain, Miten; Koren, Sergey; Miga, Karen H; Quick, Josh; Rand, Arthur C; Sasani, Thomas A; Tyson, John R; Beggs, Andrew D; Dilthey, Alexander T; Fiddes, Ian T; Malla, Sunir; Marriott, Hannah; Nieto, Tom; O'Grady, Justin; Olsen, Hugh E; Pedersen, Brent S; Rhie, Arang; Richardson, Hollian; Quinlan, Aaron R; Snutch, Terrance P; Tee, Louise; Paten, Benedict; Phillippy, Adam M; Simpson, Jared T; Loman, Nicholas J; Loose, Matthew Nature biotechnology. 29431738 2018 Jan 29;
Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging. Kim, Hyunwoo J; Adluru, Nagesh; Suri, Heemanshu; Vemuri, Baba C; Johnson, Sterling C; Singh, Vikas Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 29430166 2017 Jul;
Systematic identification of correlates of HIV infection: an X-wide association study. Patel, Chirag J; Bhattacharya, Jay; Ioannidis, John P A; Bendavid, Eran AIDS (London, England). 29424772 2018 04 24;
Integrated Theory- and Data-driven Feature Selection in Gene Expression Data Analysis. Raghu, Vineet K; Ge, Xiaoyu; Chrysanthis, Panos K; Benos, Panayiotis V Proceedings. International Conference on Data Engineering. 29422764 2017 Apr;
iLid: Low-power Sensing of Fatigue and Drowsiness Measures on a Computational Eyeglass. Rostaminia, Soha; Mayberry, Addison; Ganesan, Deepak; Marlin, Benjamin; Gummeson, Jeremy Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. 29417956 2017 Jun;
Online Graph Completion: Multivariate Signal Recovery in Computer Vision. Kim, Won Hwa; Jalal, Mona; Hwang, Seongjae; Johnson, Sterling C; Singh, Vikas Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 29416294 2017 Jul;
The Incremental Multiresolution Matrix Factorization Algorithm. Ithapu, Vamsi K; Kondor, Risi; Johnson, Sterling C; Singh, Vikas Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 29416293 2017 Jul;
Neuroanatomical morphometric characterization of sex differences in youth using statistical learning. Sepehrband, Farshid; Lynch, Kirsten M; Cabeen, Ryan P; Gonzalez-Zacarias, Clio; Zhao, Lu; D'Arcy, Mike; Kesselman, Carl; Herting, Megan M; Dinov, Ivo D; Toga, Arthur W; Clark, Kristi A NeuroImage. 29414494 2018 May 15;
The Influence of Study-Level Inference Models and Study Set Size on Coordinate-Based fMRI Meta-Analyses. Bossier, Han; Seurinck, Ruth; Kühn, Simone; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Martinot, Jean-Luc; Lemaitre, Herve; Paus, Tomá?; Millenet, Sabina; Moerkerke, Beatrijs Frontiers in neuroscience. 29403344 2017;
Anyone Can Become a Troll: Causes of Trolling Behavior in Online Discussions. Cheng, Justin; Bernstein, Michael; Danescu-Niculescu-Mizil, Cristian; Leskovec, Jure CSCW : proceedings of the Conference on Computer-Supported Cooperative Work. Conference on Computer-Supported Cooperative Work. 29399664 2017 Feb-Mar;
Gaussian Quadrature for Kernel Features. Dao, Tri; De Sa, Christopher; Ré, Christopher Advances in neural information processing systems. 29398882 2017 Dec;
Understanding and Optimizing Asynchronous Low-Precision Stochastic Gradient Descent. De Sa, Christopher; Feldman, Matthew; Ré, Christopher; Olukotun, Kunle Proceedings. International Symposium on Computer Architecture. 29391770 2017 Jun;
Inferring Generative Model Structure with Static Analysis. Varma, Paroma; He, Bryan; Bajaj, Payal; Banerjee, Imon; Khandwala, Nishith; Rubin, Daniel L; Ré, Christopher Advances in neural information processing systems. 29391769 2017 Dec;
Benefits of and Barriers to Pharmacogenomics-Guided Treatment for Major Depressive Disorder. Ahmed, Ahmed T; Weinshilboum, Richard; Frye, Mark A Clinical pharmacology and therapeutics. 29388201 2018 May;
Two-Sample Tests for High-Dimensional Linear Regression with an Application to Detecting Interactions. Xia, Yin; Cai, Tianxi; Cai, T Tony Statistica Sinica. 29386856 2018 Jan;
Statistical tests and identifiability conditions for pooling and analyzing multisite datasets. Zhou, Hao Henry; Singh, Vikas; Johnson, Sterling C; Wahba, Grace; Alzheimer?s Disease Neuroimaging Initiative Proceedings of the National Academy of Sciences of the United States of America. 29386387 2018 Feb 13;
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. Menschaert, Gerben; Wang, Xiaojing; Jones, Andrew R; Ghali, Fawaz; Fenyö, David; Olexiouk, Volodimir; Zhang, Bing; Deutsch, Eric W; Ternent, Tobias; Vizcaíno, Juan Antonio Genome biology. 29386051 2018 01 31;
Germline contamination and leakage in whole genome somatic single nucleotide variant detection. Sendorek, Dorota H; Caloian, Cristian; Ellrott, Kyle; Bare, J Christopher; Yamaguchi, Takafumi N; Ewing, Adam D; Houlahan, Kathleen E; Norman, Thea C; Margolin, Adam A; Stuart, Joshua M; Boutros, Paul C BMC bioinformatics 29385983 2018 01 31
Interleukins and their signaling pathways in the Reactome biological pathway database. Jupe, Steve; Ray, Keith; Roca, Corina Duenas; Varusai, Thawfeek; Shamovsky, Veronica; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning The Journal of allergy and clinical immunology. 29378288 2018 Apr;
Hippo Cascade Controls Lineage Commitment of Liver Tumors in Mice and Humans. Zhang, Shanshan; Wang, Jingxiao; Wang, Haichuan; Fan, Lingling; Fan, Biao; Zeng, Billy; Tao, Junyan; Li, Xiaolei; Che, Li; Cigliano, Antonio; Ribback, Silvia; Dombrowski, Frank; Chen, Bin; Cong, Wenming; Wei, Lixin; Calvisi, Diego F; Chen, Xin The American journal of pathology. 29378174 2018 04;
Reactome graph database: Efficient access to complex pathway data. Fabregat, Antonio; Korninger, Florian; Viteri, Guilherme; Sidiropoulos, Konstantinos; Marin-Garcia, Pablo; Ping, Peipei; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning PLoS computational biology. 29377902 2018 01;
Cortical Abnormalities Associated With Pediatric and Adult Obsessive-Compulsive Disorder: Findings From the ENIGMA Obsessive-Compulsive Disorder Working Group. Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Calvo, Rosa The American journal of psychiatry. 29377733 2018 05 01;
Cognitive genomics: Searching for the genetic roots of neuropsychological functioning. Bearden, Carrie E; Glahn, David C Neuropsychology. 29376674 2017 Nov;
Using Collaborative Simulation Modeling to Develop a Web-Based Tool to Support Policy-Level Decision Making About Breast Cancer Screening Initiation Age. Burnside, Elizabeth S; Lee, Sandra J; Bennette, Carrie; Near, Aimee M; Alagoz, Oguzhan; Huang, Hui; van den Broek, Jeroen J; Kim, Joo Yeon; Ergun, Mehmet A; van Ravesteyn, Nicolien T; Stout, Natasha K; de Koning, Harry J; Mandelblatt, Jeanne S MDM policy & practice. 29376135 2017 Jul;
Learning to Compose Domain-Specific Transformations for Data Augmentation. Ratner, Alexander J; Ehrenberg, Henry R; Hussain, Zeshan; Dunnmon, Jared; Ré, Christopher Advances in neural information processing systems. 29375240 2017 Dec;
Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 1: From Methodology to Clinical Implementation. Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, Rasu Journal of the American College of Radiology : JACR. 29366600 2018 03;
Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 2: From Clinical Implementation to Enterprise. Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, Rasu Journal of the American College of Radiology : JACR. 29366598 2018 03;
Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study. Whelan, Christopher D; Altmann, Andre; Botía, Juan A; Jahanshad, Neda; Hibar, Derrek P; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bartolini, Emanuele; Bergo, Felipe P G; Bernardes, Tauana; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carr, Sarah J; Chen, Jian; Chen, Shuai; Cherubini, Andrea; David, Philippe; Domin, Martin; Foley, Sonya; França, Wendy; Haaker, Gerrit; Isaev, Dmitry; Keller, Simon S; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Langner, Soenke; Lenge, Matteo; Leyden, Kelly M; Liu, Min; Loi, Richard Q; Martin, Pascal; Mascalchi, Mario; Morita, Marcia E; Pariente, Jose C; Rodríguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Yao, Yi; Yasuda, Clarissa L; Zhang, Guohao; Bargalló, Nuria; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris C; Blümcke, Ingmar; Carlson, Chad; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Focke, Niels K; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Kälviäinen, Reetta; Kochunov, Peter; Kwan, Patrick; Labate, Angelo; McDonald, Carrie R; Meletti, Stefano; O'Brien, Terence J; Ourselin, Sebastien; Richardson, Mark P; Striano, Pasquale; Thesen, Thomas; Wiest, Roland; Zhang, Junsong; Vezzani, Annamaria; Ryten, Mina; Thompson, Paul M; Sisodiya, Sanjay M Brain : a journal of neurology. 29365066 2018 Feb 01;
e wrapper: Operationalizing engagement strategies in mHealth. Wagner 3rd, Blake; Liu, Elaine; Shaw, Steven D; Iakovlev, Gleb; Zhou, Linlu; Harrington, Christina; Abowd, Gregory; Yoon, Carolyn; Kumar, Santosh; Murphy, Susan; Spring, Bonnie; Nahum-Shani, Inbal Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 29362728 2017 Sep;
Co-activation patterns in resting-state fMRI signals. Liu, Xiao; Zhang, Nanyin; Chang, Catie; Duyn, Jeff H NeuroImage. 29355767 2018 10 15;
mHealth Visual Discovery Dashboard. Fang, Dezhi; Hohman, Fred; Polack, Peter; Sarker, Hillol; Kahng, Minsuk; Sharmin, Moushumi; al'Absi, Mustafa; Chau, Duen Horng Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 29354812 2017 Sep;
ShapeShop: Towards Understanding Deep Learning Representations via Interactive Experimentation. Hohman, Fred; Hodas, Nathan; Chau, Duen Horng Extended abstracts on Human factors in computing systems. CHI Conference. 29354810 2017 May;
Lingual Gyrus Surface Area Is Associated with Anxiety-Depression Severity in Young Adults: A Genetic Clustering Approach. Couvy-Duchesne, Baptiste; Strike, Lachlan T; de Zubicaray, Greig I; McMahon, Katie L; Thompson, Paul M; Hickie, Ian B; Martin, Nicholas G; Wright, Margaret J eNeuro. 29354681 2018 Jan-Feb;
Loyalty in Online Communities. Hamilton, William L; Zhang, Justine; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, Jure Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media. 29354326 2017 May;
Community Identity and User Engagement in a Multi-Community Landscape. Zhang, Justine; Hamilton, William L; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, Jure Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media. 29354325 2017 May;
Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer-associated genetic variant rs4415084. Zhang, Yi; Manjunath, Mohith; Zhang, Shilu; Chasman, Deborah; Roy, Sushmita; Song, Jun S Cancer research. 29351903 2018 Jan 19;
Are minor alleles more likely to be risk alleles? Kido, Takashi; Sikora-Wohlfeld, Weronika; Kawashima, Minae; Kikuchi, Shinichi; Kamatani, Naoyuki; Patwardhan, Anil; Chen, Richard; Sirota, Marina; Kodama, Keiichi; Hadley, Dexter; Butte, Atul J BMC medical genomics. 29351777 2018 01 19;
Guidelines for authors and reviewers on antibody use in physiology studies. Brooks, Heddwen L; Lindsey, Merry L American journal of physiology. Heart and circulatory physiology. 29351459 2018 Apr 01;
Guidelines for measuring cardiac physiology in mice. Lindsey, Merry L; Kassiri, Zamaneh; Virag, Jitka A I; de Castro Brás, Lisandra E; Scherrer-Crosbie, Marielle American journal of physiology. Heart and circulatory physiology. 29351456 2018 Apr 01;
Guidelines for experimental models of myocardial ischemia and infarction. Lindsey, Merry L; Bolli, Roberto; Canty Jr, John M; Du, Xiao-Jun; Frangogiannis, Nikolaos G; Frantz, Stefan; Gourdie, Robert G; Holmes, Jeffrey W; Jones, Steven P; Kloner, Robert A; Lefer, David J; Liao, Ronglih; Murphy, Elizabeth; Ping, Peipei; Przyklenk American journal of physiology. Heart and circulatory physiology. 29351451 2018 Apr 01;
MIRO: guidelines for minimum information for the reporting of an ontology. Matentzoglu, Nicolas; Malone, James; Mungall, Chris; Stevens, Robert Journal of biomedical semantics. 29347969 2018 Jan 18;
Robust Dynamic Risk Prediction with Longitudinal Studies. Zhou, Qian M; Dai, Wei; Zheng, Yingye; Cai, Tianxi Statistical theory and related fields. 29335682 2017;
Learning Tree-Structured Detection Cascades for Heterogeneous Networks of Embedded Devices. Dadkhahi, Hamid; Marlin, Benjamin M KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29333328 2017 Aug;
A bibliometric review of drug repurposing. Baker, Nancy C; Ekins, Sean; Williams, Antony J; Tropsha, Alexander Drug discovery today. 29330123 2018 Mar;
Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups. Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W Proteomics. 29319931 2018 Feb;
Standardized Effect Sizes for Preventive Mobile Health Interventions in Micro-randomized Trials. Luers, Brook; Klasnja, Predrag; Murphy, Susan Prevention science : the official journal of the Society for Prevention Research. 29318443 2018 Jan 09;
A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth. Rappoport, Nadav; Toung, Jonathan; Hadley, Dexter; Wong, Ronald J; Fujioka, Kazumichi; Reuter, Jason; Abbott, Charles W; Oh, Sam; Hu, Donglei; Eng, Celeste; Huntsman, Scott; Bodian, Dale L; Niederhuber, John E; Hong, Xiumei; Zhang, Ge; Sikora-Wohfeld, Weronika; Gignoux, Christopher R; Wang, Hui; Oehlert, John; Jelliffe-Pawlowski, Laura L; Gould, Jeffrey B; Darmstadt, Gary L; Wang, Xiaobin; Bustamante, Carlos D; Snyder, Michael P; Ziv, Elad; Patsopoulos, Nikolaos A; Muglia, Louis J; Burchard, Esteban; Shaw, Gary M; O'Brodovich, Hugh M; Stevenson, David K; Butte, Atul J; Sirota, Marina Scientific reports. 29317701 2018 01 09;
Integrated omics dissection of proteome dynamics during cardiac remodeling. Lau, Edward; Cao, Quan; Lam, Maggie P Y; Wang, Jie; Ng, Dominic C M; Bleakley, Brian J; Lee, Jessica M; Liem, David A; Wang, Ding; Hermjakob, Henning; Ping, Peipei Nature communications. 29317621 ;
Gut microbiome populations are associated with structure-specific changes in white matter architecture. Ong, Irene M; Gonzalez, Jose G; McIlwain, Sean J; Sawin, Emily A; Schoen, Andrew J; Adluru, Nagesh; Alexander, Andrew L; Yu, John-Paul J Translational psychiatry. 29317592 2018 Jan 10;
Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide. Marshall, Iain J; Noel-Storr, Anna; Kuiper, Joël; Thomas, James; Wallace, Byron C Research synthesis methods. 29314757 ;
Interactive Exploration on Large Genomic Datasets. Tu, Eric EECS technical report series. 29308454 ;
Hypothesis Testing in Unsupervised Domain Adaptation with Applications in Alzheimer's Disease. Zhou, Hao Henry; Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas Advances in neural information processing systems. 29308004 2016;
Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function. Sallam, Tamer; Sandhu, Jaspreet; Tontonoz, Peter Circulation research. 29301847 2018 Jan 05;
Chemotext: A Publicly Available Web Server for Mining Drug-Target-Disease Relationships in PubMed. Capuzzi, Stephen J; Thornton, Thomas E; Liu, Kammy; Baker, Nancy; Lam, Wai In; O'Banion, Colin P; Muratov, Eugene N; Pozefsky, Diane; Tropsha, Alexander Journal of chemical information and modeling. 29300482 ;
Linking temporal medical records using non-protected health information data. Bonomi, Luca; Jiang, Xiaoqian Statistical methods in medical research. 29298592 2017 Jan 01;
Building Interoperable FHIR-Based Vocabulary Mapping Services: A Case Study of OHDSI Vocabularies and Mappings. Jiang, Guoqian; Kiefer, Richard; Prud'hommeaux, Eric; Solbrig, Harold R Studies in health technology and informatics. 29295408 2017;
A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR. Jiang, Guoqian; Kiefer, Richard C; Sharma, Deepak K; Prud'hommeaux, Eric; Solbrig, Harold R Studies in health technology and informatics. 29295227 2017;
Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications. Hong, Na; Prodduturi, Naresh; Wang, Chen; Jiang, Guoqian Studies in health technology and informatics. 29295223 2017;
Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. Amith, Muhammad; Manion, Frank J; Harris, Marcelline R; Zhang, Yaoyun; Xu, Hua; Tao, Cui Studies in health technology and informatics. 29295217 2017;
Investigating the differential contributions of sex and brain size to gray matter asymmetry. Kurth, Florian; Thompson, Paul M; Luders, Eileen Cortex; a journal devoted to the study of the nervous system and behavior. 29287244 2018 Feb;
Proteomic analysis of the cardiac extracellular matrix: clinical research applications. Lindsey, Merry L; Jung, Mira; Hall, Michael E; DeLeon-Pennell, Kristine Y Expert review of proteomics. 29285949 2018 Feb;
Neural response to working memory demand predicts neurocognitive deficits in HIV. Cohen, Ronald A; Siegel, S; Gullett, J M; Porges, E; Woods, A J; Huang, H; Zhu, Y; Tashima, K; Ding, M-Z Journal of neurovirology. 29280107 2018 Jun;
Center of Excellence for Mobile Sensor Data-to-Knowledge (MD2K). Kumar, Santosh; Abowd, Gregory; Abraham, William T; al'Absi, Mustafa; Chau, Duen Horng Polo; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Hnat, Timothy; Hossain, Syed Monowar; Ives, Zachary; Kerr, Jacqueline; Marlin, Benjamin M; Murphy, Susan; Rehg, James M; Nahum-Shani, Inbal; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, Dave IEEE pervasive computing. 29276451 2017 Apr-Jun;
Neural circuitry underlying sustained attention in healthy adolescents and in ADHD symptomatology. O'Halloran, Laura; Cao, Zhipeng; Ruddy, Kathy; Jollans, Lee; Albaugh, Matthew D; Aleni, Andrea; Potter, Alexandra S; Vahey, Nigel; Banaschewski, Tobias; Hohmann, Sarah; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Kelly, Clare; Whelan, Robert NeuroImage. 29274748 2018 04 01;
MinION-based long-read sequencing and assembly extends theCaenorhabditis elegansreference genome. Tyson, John R; O'Neil, Nigel J; Jain, Miten; Olsen, Hugh E; Hieter, Philip; Snutch, Terrance P Genome research. 29273626 2018 Feb;
SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis. Magis, Andrew T; Funk, Cory C; Price, Nathan D IEEE life sciences letters. 29270443 2015 Aug;
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. Gutiérrez-Sacristán, Alba; Guedj, Romain; Korodi, Gabor; Stedman, Jason; Furlong, Laura I; Patel, Chirag J; Kohane, Isaac S; Avillach, Paul Bioinformatics (Oxford, England). 29267850 2017 Dec 18;
A community effort to protect genomic data sharing, collaboration and outsourcing. Wang, Shuang; Jiang, Xiaoqian; Tang, Haixu; Wang, Xiaofeng; Bu, Diyue; Carey, Knox; Dyke, Stephanie Om; Fox, Dov; Jiang, Chao; Lauter, Kristin; Malin, Bradley; Sofia, Heidi; Telenti, Amalio; Wang, Lei; Wang, Wenhao; Ohno-Machado, Lucila NPJ genomic medicine. 29263842 2017;
Deep Learning based Classification of FDG-PET Data for Alzheimers Disease Categories. Singh, Shibani; Srivastava, Anant; Mi, Liang; Caselli, Richard J; Chen, Kewei; Goradia, Dhruman; Reiman, Eric M; Wang, Yalin Proceedings of SPIE--the International Society for Optical Engineering. 29263566 2017 Oct;
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Glusman, Gustavo; Rose, Peter W; Prli?, Andreas; Dougherty, Jennifer; Duarte, José M; Hoffman, Andrew S; Barton, Geoffrey J; Bendixen, Emøke; Bergquist, Timothy; Bock, Christian; Brunk, Elizabeth; Buljan, Marija; Burley, Stephen K; Cai, Binghuang; Carter, Hannah; Gao, JianJiong; Godzik, Adam; Heuer, Michael; Hicks, Michael; Hrabe, Thomas; Karchin, Rachel; Leman, Julia Koehler; Lane, Lydie; Masica, David L; Mooney, Sean D; Moult, John; Omenn, Gilbert S; Pearl, Frances; Pejaver, Vikas; Reynolds, Sheila M; Rokem, Ariel; Schwede, Torsten; Song, Sicheng; Tilgner, Hagen; Valasatava, Yana; Zhang, Yang; Deutsch, Eric W Genome medicine. 29254494 2017 Dec 18;
Complete hazard ranking to analyze right-censored data: An ALS survival study. Huang, Zhengnan; Zhang, Hongjiu; Boss, Jonathan; Goutman, Stephen A; Mukherjee, Bhramar; Dinov, Ivo D; Guan, Yuanfang; Pooled Resource Open-Access ALS Clinical Trials Consortium PLoS computational biology. 29253881 ;
Understanding cardiac extracellular matrix remodeling to develop biomarkers of myocardial infarction outcomes. Nielsen, Signe Holm; Mouton, Alan J; DeLeon-Pennell, Kristine Y; Genovese, Federica; Karsdal, Morten; Lindsey, Merry L Matrix biology : journal of the International Society for Matrix Biology. 29247693 ;
Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research. Erdemir, Ahmet; Hunter, Peter J; Holzapfel, Gerhard A; Loew, Leslie M; Middleton, John; Jacobs, Christopher R; Nithiarasu, Perumal; Löhner, Rainlad; Wei, Guowei; Winkelstein, Beth A; Barocas, Victor H; Guilak, Farshid; Ku, Joy P; Hicks, Jennifer L; Delp, Scott L; Sacks, Michael; Weiss, Jeffrey A; Ateshian, Gerard A; Maas, Steve A; McCulloch, Andrew D; Peng, Grace C Y Journal of biomechanical engineering. 29247253 2018 Feb 01;
Data-Driven Mammography Screening Practices-Reply. Lee, Cindy S; Sickles, Edward A; Burnside, Elizabeth S JAMA oncology. 29242927 2017 Dec 14;
Embedding Learning with Events in Heterogeneous Information Networks. Gui, Huan; Liu, Jialu; Tao, Fangbo; Jiang, Meng; Norick, Brandon; Kaplan, Lance; Han, Jiawei IEEE transactions on knowledge and data engineering. 29242698 2017 Nov;
Finding Pure Sub-Models for Improved Differentiation of Bi-Factor and Second-Order Models. Yang, Renjie; Spirtes, Peter; Scheines, Richard; Reise, Steven P; Mansoff, Maxwell Structural equation modeling : a multidisciplinary journal. 29230085 2017;
An Optimal Transportation based Univariate Neuroimaging Index. Mi, Liang; Zhang, Wen; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Reiman, Eric M; Gu, Xianfeng; Wang, Yalin Proceedings. IEEE International Conference on Computer Vision. 29225556 2017;
Action Centered Contextual Bandits. Greenewald, Kristjan; Tewari, Ambuj; Klasnja, Predrag; Murphy, Susan Advances in neural information processing systems. 29225449 2017 Dec;
Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure. P Tafti, Ahmad; Badger, Jonathan; LaRose, Eric; Shirzadi, Ehsan; Mahnke, Andrea; Mayer, John; Ye, Zhan; Page, David; Peissig, Peggy JMIR medical informatics. 29222076 2017 Dec 08;
VisAGE: Integrating external knowledge into electronic medical record visualization. Huang, Edward W; Wang, Sheng; Zhai, ChengXiang Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 29218916 2018;
Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline. Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 29218892 2018;
Democratizing data science through data science training. Van Horn, John Darrell; Fierro, Lily; Kamdar, Jeana; Gordon, Jonathan; Stewart, Crystal; Bhattrai, Avnish; Abe, Sumiko; Lei, Xiaoxiao; O'Driscoll, Caroline; Sinha, Aakanchha; Jain, Priyambada; Burns, Gully; Lerman, Kristina; Ambite, José Luis Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 29218890 2018;
Large-scale analysis of disease pathways in the human interactome. Agrawal, Monica; Zitnik, Marinka; Leskovec, Jure Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 29218874 2018;
Smaller Hippocampal Volume in Posttraumatic Stress Disorder: A Multisite ENIGMA-PGC Study: Subcortical Volumetry Results From Posttraumatic Stress Disorder Consortia. Logue, Mark W; van Rooij, Sanne J H; Dennis, Emily L; Davis, Sarah L; Hayes, Jasmeet P; Stevens, Jennifer S; Densmore, Maria; Haswell, Courtney C; Ipser, Jonathan; Koch, Saskia B J; Korgaonkar, Mayuresh; Lebois, Lauren A M; Peverill, Matthew; Baker, Justin T; Boedhoe, Premika S W; Frijling, Jessie L; Gruber, Staci A; Harpaz-Rotem, Ilan; Jahanshad, Neda; Koopowitz, Sheri; Levy, Ifat; Nawijn, Laura; O'Connor, Lauren; Olff, Miranda; Salat, David H; Sheridan, Margaret A; Spielberg, Jeffrey M; van Zuiden, Mirjam; Winternitz, Sherry R; Wolff, Jonathan D; Wolf, Erika J; Wang, Xin; Wrocklage, Kristen; Abdallah, Chadi G; Bryant, Richard A; Geuze, Elbert; Jovanovic, Tanja; Kaufman, Milissa L; King, Anthony P; Krystal, John H; Lagopoulos, Jim; Bennett, Maxwell; Lanius, Ruth; Liberzon, Israel; McGlinchey, Regina E; McLaughlin, Katie A; Milberg, William P; Miller, Mark W; Ressler, Kerry J; Veltman, Dick J; Stein, Dan J; Thomaes, Kathleen; Thompson, Paul M; Morey, Rajendra A Biological psychiatry. 29217296 2018 Feb 01;
KAT2A coupled with the ?-KGDH complex acts as a histone H3 succinyltransferase. Wang, Yugang; Guo, Yusong R; Liu, Ke; Yin, Zheng; Liu, Rui; Xia, Yan; Tan, Lin; Yang, Peiying; Lee, Jong-Ho; Li, Xin-Jian; Hawke, David; Zheng, Yanhua; Qian, Xu; Lyu, Jianxin; He, Jie; Xing, Dongming; Tao, Yizhi Jane; Lu, Zhimin Nature. 29211711 2017 12 14;
Reproducibility, sharing and progress in nanomaterial databases. Tropsha, Alexander; Mills, Karmann C; Hickey, Anthony J Nature nanotechnology 29209007 2017 12 06
Development and application of two semi-automated tools for targeted medical product surveillance in a distributed data network. Connolly, John G; Wang, Shirley V; Fuller, Candace C; Toh, Sengwee; Panozzo, Catherine A; Cocoros, Noelle; Zhou, Meijia; Gagne, Joshua J; Maro, Judith C Current epidemiology reports. 29204333 2017 Dec;
Estimating Effects of Dynamic Treatment Strategies in Pharmacoepidemiologic Studies with Time-varying Confounding: A Primer. Li, Xiaojuan; Young, Jessica G; Toh, Sengwee Current epidemiology reports. 29204332 2017 Dec;
Pharmacoepidemiology in the era of real-world evidence. Toh, Sengwee Current epidemiology reports. 29204331 2017 Dec;
Estimating bounds on causal effects in high-dimensional and possibly confounded systems. Malinsky, Daniel; Spirtes, Peter International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. 29203954 2017 Sep;
APPROXIMATING PRINCIPAL GENETIC COMPONENTS OF SUBCORTICAL SHAPE. Gutman, Boris A; Pizzagalli, Fabrizio; Jahanshad, Neda; Wright, Margaret J; McMahon, Katie L; de Zubicaray, Greig; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 29201284 2017;
A COMPARISON OF NETWORK DEFINITIONS FOR DETECTING SEX DIFFERENCES IN BRAIN CONNECTIVITY USING SUPPORT VECTOR MACHINES. Hafzalla, George W; Ragothaman, Anjanibhargavi; Faskowitz, Joshua; Jahanshad, Neda; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Braskie, Meredith N; Prasad, Gautam; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 29201283 2017;
THE IMPACT OF MATCHING FUNCTIONAL ON ATROPHY MEASUREMENT FROM GEODESIC SHOOTING IN DIFFEOMORPHISMS. Fleishman, Greg M; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 29201282 2017;
Graph theoretical approaches towards understanding differences in frontoparietal and default mode networks in Autism. Riedel, Brandalyn C; Jahanshad, Neda; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 29201281 2017;
A NETWORK APPROACH TO EXAMINING INJURY SEVERITY IN PEDIATRIC TBI. Dennis, Emily L; Rashid, Faisal; Jahanshad, Neda; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 29201280 2017;
MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS. Dennis, Emily L; Rashid, Faisal; Faskowitz, Josh; Jin, Yan; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Hickie, Ian B; Wright, Margaret J; Jahanshad, Neda; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 29201279 2017;
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations. Keenan, Alexandra B; Jenkins, Sherry L; Jagodnik, Kathleen M; Koplev, Simon; He, Edward; Torre, Denis; Wang, Zichen; Dohlman, Anders B; Silverstein, Moshe C; Lachmann, Alexander; Kuleshov, Maxim V; Ma'ayan, Avi; Stathias, Vasileios; Terryn, Raymond; Cooper, Daniel; Forlin, Michele; Koleti, Amar; Vidovic, Dusica; Chung, Caty; Schürer, Stephan C; Vasiliauskas, Jouzas; Pilarczyk, Marcin; Shamsaei, Behrouz; Fazel, Mehdi; Ren, Yan; Niu, Wen; Clark, Nicholas A; White, Shana; Mahi, Naim; Zhang, Lixia; Kouril, Michal; Reichard, John F; Sivaganesan, Siva; Medvedovic, Mario; Meller, Jaroslaw; Koch, Rick J; Birtwistle, Marc R; Iyengar, Ravi; Sobie, Eric A; Azeloglu, Evren U; Kaye, Julia; Osterloh, Jeannette; Haston, Kelly; Kalra, Jaslin; Finkbiener, Steve; Li, Jonathan; Milani, Pamela; Adam, Miriam; Escalante-Chong, Renan; Sachs, Karen; Lenail, Alex; Ramamoorthy, Divya; Fraenkel, Ernest; Daigle, Gavin; Hussain, Uzma; Coye, Alyssa; Rothstein, Jeffrey; Sareen, Dhruv; Ornelas, Loren; Banuelos, Maria; Mandefro, Berhan; Ho, Ritchie; Svendsen, Clive N; Lim, Ryan G; Stocksdale, Jennifer; Casale, Malcolm S; Thompson, Terri G; Wu, Jie; Thompson, Leslie M; Dardov, Victoria; Venkatraman, Vidya; Matlock, Andrea; Van Eyk, Jennifer E; Jaffe, Jacob D; Papanastasiou, Malvina; Subramanian, Aravind; Golub, Todd R; Erickson, Sean D; Fallahi-Sichani, Mohammad; Hafner, Marc; Gray, Nathanael S; Lin, Jia-Ren; Mills, Caitlin E; Muhlich, Jeremy L; Niepel, Mario; Shamu, Caroline E; Williams, Elizabeth H; Wrobel, David; Sorger, Peter K; Heiser, Laura M; Gray, Joe W; Korkola, James E; Mills, Gordon B; LaBarge, Mark; Feiler, Heidi S; Dane, Mark A; Bucher, Elmar; Nederlof, Michel; Sudar, Damir; Gross, Sean; Kilburn, David F; Smith, Rebecca; Devlin, Kaylyn; Margolis, Ron; Derr, Leslie; Lee, Albert; Pillai, Ajay Cell systems. 29199020 2017 Nov 24;
Methylation of OPRL1 mediates the effect of psychosocial stress on binge drinking in adolescents. Ruggeri, Barbara; Macare, Christine; Stopponi, Serena; Jia, Tianye; Carvalho, Fabiana M; Robert, Gabriel; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Sommer, Wolfgang H; Bakalkin, Georgy; Ciccocioppo, Roberto; Schumann, Gunter; IMAGEN consortium