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Funded Research

Big Data to Knowledge (BD2K) Community-Based Data and Metadata Standards Efforts (R24) RFA-ES-16-010
PI NameInstitution NameTitle
DEUTSCH, ERICINSTITUTE FOR SYSTEMS BIOLOGYAdvancing data and metadata standards for proteomics mass spectra
PETERS, BJOERN (contact) 
MUNGALL, CHRISTOPHER J
LA JOLLA INST FOR ALLERGY & IMMUNOLGYServices to support the OBO foundry standards
SIM, IDAUNIVERSITY OF CALIFORNIA, SAN FRANCISCOOpen mHealth: Community-Based Data and Metadata Standards for Mobile Health

 

BD2K Support for Meetings of Data Science Related Organizations (U13) RFA-CA-16-020
PI NameInstitution NameTitle
HAENDEL, MELISSA A (contact) 
ROBINSON, PETER NICHOLAS
OREGON HEALTH & SCIENCE UNIVERSITYForums for Integrative Phenomics

 

BD2K Research Education Curriculum Development: Data Science Overview for Biomedical Scientists (R25) RFA-ES-16-011
PI NameInstitution NameTitle
SARKAR, INDRA NEIL (contact) 
BROCK, JEFFREY 
GATSONIS, CONSTANTINE A 
ISTRAIL, SORIN C. 
SANDSTEDE, BJORN
BROWN UNIVERSITYTraining and Teaching for Transforming Big Data to Knowledge

 

BD2K Enhancing Diversity in Biomedical Data Science (R25) RFA-MD-16-002
PI NameInstitution NameTitle
BAI, YONGSHENG (contact) 
COOMBES, KEVIN ROBERT 
HUANG, KUN
INDIANA STATE UNIVERSITYBD4ISU: Big Data for Indiana State University
GIANNOPOULOU, EVGENIA (contact) 
PATHAK, JYOTISHMAN
NEW YORK CITY COLLEGE OF TECHNOLOGYCity Tech-WCM Big Data Training Program in Biomedical Informatics
MARQUEZ-MAGANA, LETICIA MARIA (contact) 
AKOM, ANTWI AARON
SAN FRANCISCO STATE UNIVERSITY  HEART & SOUL: Enabling full representation in biomedical Big Data science

 

Big Data to Knowledge (BD2K) Enhancing the Efficiency and Effectiveness of Digital Data Curation for Biomedical Big Data (U01) RFA-LM-17-001
PI NameInstitution NameTitle
HADLEY, DEXTER DUNIVERSITY OF CALIFORNIA, SAN FRANCISCOCrowd-Assisted Deep Learning (CrADLe) Digital Curation to Translate Big Data into Precision Medicine
SCHÜRER, STEPHAN C (contact) 
BUNIN, BARRY A 
MUSEN, MARK A
UNIVERSITY OF MIAMI SCHOOL OF MEDICINEUnifying Templates, Ontologies and Tools to Achieve Effective Annotation of Bioassay Protocols
STERNBERG, PAUL WARREN (contact) 
SCHEDL, TIM
CALIFORNIA INSTITUTE OF TECHNOLOGYStreamlined capture and curation of unpublished data

 

BD2K Mentored Career Development Award in Biomedical Big Data Science for Clinicians and Doctorally Prepared Scientists (K01) RFA-ES-16-002
PI NameInstitution NameTitle
CHEN, BINUNIVERSITY OF CALIFORNIA, SAN FRANCISCOIntegrating transcriptomic, proteomic and pharmacogenomic data to inform individualized therapy in cancers
MELAMED, RACHEL DANIAUNIVERSITY OF CHICAGOUsing clinical data to identify FDA-approved drugs for cancer prevention and therapeutic repurposing
SUL, JAE HOONUNIVERSITY OF CALIFORNIA LOS ANGELESA computational genomics approach to identify roles of rare genetic variants in psychiatric disorders and gene expression

 

BD2K Open Educational Resources for Skills Development in Biomedical Big Data Science (R25) RFA-HG-16-016
PI NameInstitution NameTitle
COOK, DIANE JOYCEWASHINGTON STATE UNIVERSITYDevelopment of an Online Course Suite in Tools for Analysis of Sensor-Based Behavioral Health Data (AHA!)

 

Big Data to Knowledge (BD2K) Development of Software Tools and Methods for Biomedical Big Data in Targeted Areas of High Need (U01) RFA-CA-15-017
PI NameInstitution NameTitle
CAMPBELL, WALTER SCOTTUNIVERSITY OF NEBRASKA MEDICAL CENTERDeploying ONC national Standards in Support of Metadata for Big Data Research Warehouse Management of Repurposed Laboratory, Pathology & Patient Findings Data From the EHR.
CLARK, TIMOTHY WMASSACHUSETTS GENERAL HOSPITALArgumentation and linked-metadata services for reproducible target validation
JIANG, GUOQIANMAYO CLINIC ROCHESTERTools for standardizing clinical research metadata using HL7 FHIR
GERSTEIN, MARK BENDERYALE UNIVERSITYMethods and Software to Enhance Genomic Privacy and Sharing of RNA-Seq Data
MUNGALL, CHRISTOPHER JUNIVERSITY OF CALIF-LAWRENC BERKELEY LABAn Intelligent Concept Agent for Assisting with the Application of Metadata
STELLING, JOHNBRIGHAM AND WOMEN'S HOSPITALIntegrating the worlds microbiology laboratories into a global microbial surveillance system
TANG, HAIXU T. (contact) 
WANG, XIAOFENG
INDIANA UNIVERSITY BLOOMINGTONEncryption methods and software for privacy-preserving analysis of biomedical data
 
TAO, CUIUNIVERSITY OF TEXAS HLTH SCI CTR HOUSTONMetadata applications on informed content to facilitate biorepository data regulation and sharing
TOH, DARRENHARVARD PILGRIM HEALTH CARE, INC.Privacy-protecting distributed analysis of biomedical big data
TROPSHA, ALEXANDERUNIV OF NORTH CAROLINA CHAPEL HILLDrug Repurposing for Cancer Therapy: From Man to Molecules to Man

 

Big Data to Knowledge (BD2K) Advancing Biomedical Science Using Crowdsourcing and Interactive Digital Media (UH2) RFA-CA-15-006
PI NameInstitution NameTitle
ANDERSON, ALEXANDER 
ROBERTSON ALLAN
H. LEE MOFFITT CANCER CTR & RES INSTCrowdsourcing optimal cancer treatment strategies that maximize efficacy and minimize toxicity
COOPER, SETH EVERETT (contact) 
KHATIB, FIRAS
NORTHEASTERN UNIVERSITYApplying Protein Databases to Crowdsourcing Structural Protein Design
FABBRI, DANIELVANDERBILT UNIVERSITYCrowd Sourcing Labels From Electronic Medical Records to Enable Biomedical Research
HADLEY, DEXTER DUNIVERSITY OF CALIFORNIA, SAN FRANCISCOCrowd-sourcing A STAR Functional Genomic Characterization of Cancer with Open Big Data
INTILLE, STEPHEN SNORTHEASTERN UNIVERSITYCrowd-Sourced Annotation of Longitudinal Sensor Data to Enhance Data-Driven Precision Medicine for Behavioral Health
IWASA, JANETUNIVERSITY OF UTAHQuorum: An Open Platform for Crowdsourcing Visual Data Analysis
MURALI, T. M. (contact) 
LUTHER, KURT
VIRGINIA POLYTECHNIC INST AND ST UNIVGraphCrowd: Using Crowdsourced Design to Visualize Effects of Environmental Chemicals on Signaling Networks
SEUNG, HYUNJUNE SEBASTIAN (contact)
ROBINSON, AMY
PRINCETON UNIVERSITY
Retinal connectome: mobile game and crowdsourcing algorithms for EyeWire II
WALLACE, BYRON CASEY (contact) 
IVES, ZACHARY 
NENKOVA, ANI
UNIVERSITY OF TEXAS, AUSTINCrowdsourcing Mark-up of the Medical Literature to Support Evidence-Based Medicine and Develop Automated Annotation Capabilities
YOSHIDA, HIROYUKIMASSACHUSETTS GENERAL HOSPITALCrowdsourcing-aided machine learning for colon cancer prevention

 

Courses for Skills Development in Biomedical Big Data Science (R25) RFA-HG-14-008
PI NameInstitution NameTitle
CHUANG, JEFFREY HSU-MINTHE JACKSON LABORATORYBig Genomic Data Skills Training for Professors
FOWLKES, CHARLESS (contact) 
DIGMAN, MICHELLE
UNIVERSITY OF CALIFORNIA-IRVINEThe Big DIPA: Data Image Processing and Analysis
HOFFMANN, ALEXANDER (contact) 
PAPP, JEANETTE CHRISTINE
UNIVERSITY OF CALIFORNIA LOS ANGELESNGS Data Analysis Skills for the Biosciences Pipeline
KOVATCH, PATRICIA (contact) 
DUDLEY, JOEL THOMAS 
HANSS, BASIL G
ICAHN SCHOOL OF MEDICINE AT MOUNT SINAICommunity Research Education and Engagement for Data Science (CREEDS)
MUKHERJEE, BHRAMAR (contact) 
JOHNSON, TIMOTHY D 
MOZAFARI, BARZAN 
NGUYEN, LONG
UNIVERSITY OF MICHIGANTransforming Analytical Learning in the Era of Big Data
OWZAR, KOUROS (contact)
CHAN, CLIBURN C
DUKE UNIVERSITYA Hands-on, Integrative Next-Generation Sequencing Course: Design, Experiment, and Analysis
RECHT, MICHAEL P (contact) 
BRAITHWAITE, RONALD SCOTT
NEW YORK UNIVERSITY SCHOOL OF MEDICINEDiscovering the Value of Imaging: A Collaborative Training Program in Comparative Effectiveness for the Field of Radiology
SAMORE, MATTHEW HUNIVERSITY OF UTAHCurriculum in Biomedical Big Data: Skill Development and Hands-On Training
SHAW, JOSEPH R.MOUNT DESERT ISLAND BIOLOGICAL LABEstablishing a Network of Skilled BD2K Practitioners: The Summer Workshop on Population-Scale Genomic Studies of Environmental Stress
VITEK, OLGANORTHEASTERN UNIVERSITYSummer School: Big Data and Statistics for Bench Scientists
ZHANG, MINPURDUE UNIVERSITYBig Data Training for Translational Omics Research

 

Biomedical Data Science Training Coordination Center (U24) RFA-ES-15-004
PI NameInstitution NameTitle
VAN HORN, JOHN DARRELL UNIVERSITY OF SOUTHERN CALIFORNIABig Data U: Empowering Modern Biomedicine via Personalized Training

 

NIH Big Data to Knowledge (BD2K) Initiative Research Education: Massive Open Online Course (MOOC) on Data Management for Biomedical Big Data (R25) RFA-LM-15-001
PI NameInstitution NameTitle
HADDAD, BASSEM R (contact) 
GUSEV, YURIY 
MCGARVEY, PETER   
GEORGETOWN UNIVERSITYDemystifying Biomedical Big Data: A User’s Guide
MARTIN, ELAINE RUNIV OF MASSACHUSETTS MED SCH WORCESTERDevelopment of a Best Practices in Research Data Management Massive Open Online Course (MOOC)

 

NIH Big Data to Knowledge (BD2K) Enhancing Diversity in Biomedical Data Science (R25) RFA-MD-15-005
PI NameInstitution NameTitle
CANNER, JUDITH ELENAUNIVERSITY CORPORATION AT MONTEREY BAYInnovative Research Education and Articulation in the Preparation of Under-represented and First Generation Students for Careers in Biomedical Big Data Science
GARCIA-ARRARAS, JOSE E (contact) 
ORDONEZ-FRANCO, PATRICIA 
PÉREZ, MARIA-EGLEE
UNIVERSITY OF PUERTO RICO RIO PIEDRASIncreasing Diversity in Interdisciplinary BD2K (IDI-BD2K)
MCELIGOT, ARCHANA JCSU FULLERTON AUXILIARY SERVICES CORPORATIONBig Data Discovery and Diversity through Research Education Advancement and Partnerships (BD3-REAP)
QIAN, LEIFISK UNIVERSITYFisk University/UIUC-Mayo KnowENG BD2K Center R25 Partnership

 

NIH Big Data to Knowledge (BD2K) Initiative Research Education: Open Educational Resources for Sharing, Annotating and Curating Biomedical Big Data (R25) RFA-LM-15-002
PI NameInstitution NameTitle
LAWSON, CATHERINE LRUTGERS, THE STATE UNIV OF N.J.Enabling Data Science in Biology
SEYMOUR, ANNE (contact) 
LEHMANN, HAROLD P
JOHNS HOPKINS UNIVERSITYTraining & Tools for Informationists to Facilitate Sharing of Next Generation Sequencing Data
SURKIS, ALISA (contact) 
READ, KEVIN
NEW YORK UNIVERSITY SCHOOL OF MEDICINEPreparing Medical Librarians to Understand and Teach Research Data Management

 

Development of Software and Analysis Methods for Biomedical Big Data in Targeted Areas of High Need (U01) RFA-HG-14-020
PI NameInstitution NameTitle
BILGIN, ALIUNIVERSITY OF ARIZONATask-Specific Compression for Biomedical Big Data
DONG, HONG-WEIUNIVERSITY OF SOUTHERN CALIFORNIAFrom Terabytes of Pixels to Intuitive Brain Networks
HUANG, ERICH S.DUKE UNIVERSITYFlexible & Executable Provenance in Data-Intensive Biomedical Research: A Flexible Research Data Service
IVES, ZACHARY(contact)
KIM, JUNHYONG
UNIVERSITY OF PENNSYLVANIAApproximating and Reasoning about Data Provenance
KOYUTURK, MEHMETCASE WESTERN RESERVE UNIVERSITYTheoretical Foundations and Software Infrastructure for Biological Network Databases
MADHAVAN, SUBHAGEORGETOWN UNIVERSITYMACE2K - Molecular And Clinical Extraction: A Natural Language Processing Tool for Personalized Medicine
MILENKOVIC, OLGICA (contact)
WEISSMAN, TSACHY
UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGNGenomic Compression: From Information Theory to Parallel Algorithms
MINOR, WLADEKUNIVERSITY OF VIRGINIAIntegrated resource for reproducibility in macromolecular crystallography
NOVEMBRE, JOHNTHE UNIVERSITY OF CHICAGOTools for Visualization of Geographic Structure in Population Genomic Data
PARK, PETER JPRESIDENT & FELLOWS OF HARVARD COLLEGEVisual Analysis of Genomic and Clinical Data from Large Patient Cohorts
PICONE, JOSEPH (contact)
HARABAGIU, SANDA MARIA
OBEID, IYAD
TEMPLE UNIV OF THE COMMONWEALTHAutomatic discovery and processing of EEG cohorts from clinical records
ROSE, PETER WUNIVERSITY OF CALIFORNIA SAN DIEGOCompressive Structural BioInformatics: High Efficiency 3D Structure Compression
SAHOO, SATYA SANKETCASE WESTERN RESERVE UNIVERSITYA PROV standard-based data source agnostic provenance engine for Big Data analytics
SCHLIEP, ALEXANDERRUTGERS, THE STATE UNIVERSITY OF NEW JERSEYMeaningful Data Compression and Reduction of High-Throughput Sequencing Data
WANG, WEI (contact) 
CONDIE, TYSON 
YOUNG, SEAN
UNIVERSITY OF CALIFORNIA LOS ANGELESMining the Social Web to Monitor Public Health and HIV Risk Behaviors
WEBER, GRIFFIN MPRESIDENT & FELLOWS OF HARVARD COLLEGEVisualizing healthcare system dynamics in biomedical Big Data
WU, CHUNLEITHE SCRIPPS RESEARCH INSTITUTECommunity Platform for Data Wrangling of Gene and Genetic Variant Annotations
ZHU, JUNICAHN SCHOOL OF MEDICINE AT MOUNT SINAIDeveloping methods for curating multi-omics data

 

Revisions to Add Biomedical Big Data Training to Active NLM Institutional Training Grants in Biomedical Informatics (T15) RFA-HG-14-006
PI NameInstitution NameTitle
HRIPCSAK, GEORGE M.COLUMBIA UNIVERSITYTraining in Biomedical Informatics at Columbia University
PAYNE, PHILIP R.O. (contact) 
CATALYUREK, UMIT V.
OHIO STATE UNIVERSITYMIDAs: Multi-modeling and Integrative Data Analytics Training Program

 

Predoctoral Training in Biomedical Big Data Science (T32) RFA-HG-14-004
PI NameInstitution NameTitle
ALTMAN, RUSS BIAGIOSTANFORD UNIVERSITYBiomedical Data Science Graduate Training at Stanford
AMOS, CHRISTOPHER IDARTMOUTH COLLEGEQuantitative Biomedical Sciences at Dartmouth
DANIELS, MICHAEL J (contact) 
DHILLON, INDERJIT 
MEYERS, LAUREN ANCEL
UNIVERSITY OF TEXAS, AUSTINPREDOCTORAL TRAINING IN BIOMEDICAL BIG DATA SCIENCE
KOSOROK, MICHAEL R (contact)
FOREST, MARK GREGORY
UNIV OF NORTH CAROLINA CHAPEL HILLBig Data to Knowledge Training Program
MALIN, BRADLEY A. (contact) 
BLUME, JEFFREY 
GADD, CYNTHIA S
VANDERBILT UNIVERSITYBIDS: Vanderbilt Training Program in BIg Biomedical Data Science
NEWTON, MICHAEL A (contact) 
DEWEY, COLIN NOEL 
GOULD, MICHAEL N
UNIVERSITY OF WISCONSIN-MADISONBio-Data Science Training Program
NOBLE, WILLIAM STAFFORD (contact) 
DANIEL, THOMAS L. 
FAIRHALL, ADRIENNE L 
WITTEN, DANIELA
UNIVERSITY OF WASHINGTONUniversity of Washington PhD Training in Big Data for Genomics and Neuroscience
PAPIN, JASON (contact) 
BROWN, DONALD E 
LOUGHRAN, THOMAS PATRICK 
SKADRON, KEVIN
UNIVERSITY OF VIRGINIATransdisciplinary Big Data Science Training at UVA
PELLEGRINI, MATTEOUNIVERSITY OF CALIFORNIA LOS ANGELESBiomedical Big Data Training Grant
QUACKENBUSH, JOHNHARVARD SCHOOL OF PUBLIC HEALTHStatistical and Quantitative Training in Big Data Health Science
RITCHIE, MARYLYN D. (contact) 
HONAVAR, VASANT G. 
LI, RUNZE
PENNSYLVANIA STATE UNIVERSITY-UNIV PARKPenn State Biomedical Big Data to Knowledge (B2D2K) Training Program
SHYU, CHI-RENUNIVERSITY OF MISSOURI-COLUMBIAMassive and Complex Data Analytics Pre-Doctoral Training in One Health
STARREN, JUSTIN B. (contact) 
KLABJAN, DIEGO
NORTHWESTERN UNIVERSITYPredoctoral Training Program in Biomedical Data Driven Discovery (BD3)
VANDERLAAN, MARK J (contact) 
JORDAN, MICHAEL 
NIELSEN, RASMUS
UNIVERSITY OF CALIFORNIA BERKELEYBiomedical Big Data Training Program at UC Berkeley

 

Open Educational Resources for Biomedical Big Data (R25) RFA-HG-14-009
PI NameInstitution NameTitle
AMARO, ROMMIE E (contact)
ALTINTAS DE CALLAFON, ILKAY
UNIVERSITY OF CALIFORNIA SAN DIEGOAN OPEN RESOURCE FOR COLLABORATIVE BIOMEDICAL BIG DATA TRAINING
BOHLAND, JASON W (contact) 
EDEN, URI TZVI 
KRAMER, MARK ALAN
BOSTON UNIVERSITYAn open, online course in neuronal data analysis for the practicing neuroscientist
CAFFO, BRIAN SCOTTJOHNS HOPKINS UNIVERSITYBig Data education for the masses: MOOCs, modules, & intelligent tutoring systems
CHURCHILL, GARY AJACKSON LABORATORYCurriculum Development and Training for Systems Genetics
ELGIN, SARAH C.R.GEORGE WASHINGTON UNIVERSITYA Genome Browser On-Ramp to Engage Biologists with Big Data
HERSH, WILLIAM R (contact)
HAENDEL, MELISSA A
MCWEENEY, SHANNON K.
OREGON HEALTH & SCIENCE UNIVERSITYAdding Big Data Open Educational Resources to the ONC Health IT Curriculum
IRIZARRY, RAFAEL ANGELHARVARD SCHOOL OF PUBLIC HEALTHBiomedical Data Science Online Curriculum on HarvardX
LEE, CHRISTOPHER UNIVERSITY OF CALIFORNIA LOS ANGELESThe BD2K Concept Network: open sharing of active-learning and tools online
PEVZNER, PAVEL AUNIVERSITY OF CALIFORNIA SAN DIEGOIntegrated Active Learning Framework for Biomedical BD2K

 

Courses for Skills Development in Biomedical Big Data Science (R25) RFA-HG-14-008
PI NameInstitution NameTitle
CHUANG, JEFFREY HSU-MINTHE JACKSON LABORATORYBig Genomic Data Skills Training for Professors
DORR, DAVID A. (contact) 
HAENDEL, MELISSA A 
MCWEENEY, SHANNON K.
OREGON HEALTH & SCIENCE UNIVERSITYOHSU Informatics Analytics BD2K Skill Course 
FOWLKES, CHARLESS (contact) 
DIGMAN, MICHELLE
UNIVERSITY OF CALIFORNIA-IRVINEThe Big DIPA: Data Image Processing and Analysis
HOFFMANN, ALEXANDER (contact) 
PAPP, JEANETTE CHRISTINE
UNIVERSITY OF CALIFORNIA LOS ANGELESNGS Data Analysis Skills for the Biosciences Pipeline
KOVATCH, PATRICIA (contact) 
DUDLEY, JOEL THOMAS 
HANSS, BASIL G
ICAHN SCHOOL OF MEDICINE AT MOUNT SINAICommunity Research Education and Engagement for Data Science (CREEDS)
MUKHERJEE, BHRAMAR (contact) 
JOHNSON, TIMOTHY D 
MOZAFARI, BARZAN 
NGUYEN, LONG
UNIVERSITY OF MICHIGANTransforming Analytical Learning in the Era of Big Data
PATHAK, JYOTISHMAN (contact)
CHUTE, CHRISTOPHER G
NEUHAUSER, CLAUDIA M.
MAYO CLINIC ROCHESTERBig Data Coursework for Computational Medicine
RECHT, MICHAEL P (contact) 
BRAITHWAITE, RONALD SCOTT
NEW YORK UNIVERSITY SCHOOL OF MEDICINEDiscovering the Value of Imaging: A Collaborative Training Program in Comparative Effectiveness for the Field of Radiology
SHAW, JOSEPH R.MOUNT DESERT ISLAND BIOLOGICAL LABEstablishing a Network of Skilled BD2K Practitioners: The Summer Workshop on Population-Scale Genomic Studies of Environmental Stress
SHOJAIE, ALI (contact)
WITTEN, DANIELA
UNIVERSITY OF WASHINGTONSummer Institute for Statistics of Big Data
ZHANG, MINPURDUE UNIVERSITYBig Data Training for Translational Omics Research

 

Mentored Career Development Award in Biomedical Big Data Science for Clinicians and Doctorally Prepared Scientists (K01) RFA-HG-14-007
PI NameInstitution NameTitle
AVANTS, BRIANUNIVERSITY OF PENNSYLVANIAImaging genomics bases of pediatric executive functioning
CALLCUT, RACHAEL AUNIVERSITY OF CALIFORNIA, SAN FRANCISCOAdvancing Outcome Metrics in Trauma Surgery Through Utilization of Big Data
CHEN, JONATHAN HAILINSTANFORD UNIVERSITYData-Mining Clinical Decision Support from Electronic Health Records
COFFMAN, DONNA LYNPENNSYLVANIA STATE UNIVERSITY-UNIV PARKNovel Methods to Identify Momentary Risk States for Stress & Physical Inactivity
FARHAT, MAHAMASSACHUSETTS GENERAL HOSPITALNew Tools for the interpretation of Pathogen Genomic Data with a focus on Mycobacterium
GARMIRE, LANA XUNIVERSITY OF HAWAII AT MANOAAn Integrative Bioinformatics Approach to Study Single Cancer Cell Heterogeneity
GLISKE, STEPHEN VUNIVERSITY OF MICHIGANEpileptic biomarkers and big data: identifying brain regions to resect in patients with refractory epilepsy
ITAKURA, HARUKASTANFORD UNIVERSITYMulti-scale data integration frameworks to improve cancer outcomes
JOHNSON, MICHAEL HIROSHIJOHNS HOPKINS UNIVERSITYMolecular Analysis and Precision Medicine in Renal Cell Carcinoma
LANDAU, DANDANA-FARBER CANCER INSTThe role of epigenetic heterogeneity in CLL evolution 
NEMATI, SHAMIMEMORY UNIVERSITYDeep Learning and Streaming Analytics for Prediction of Adverse Events in the ICU
LEE, GEORGECASE WESTERN RESERVE UNIVERSITYBig data convergence of pathology and omics for disease prognosis
NGUYEN, QUYNHUNIVERSITY OF UTAHHashtagHealth: A Social Media Big Data Resource for Neighborhood Effects Research
NSOESIE, ELAINE O.CHILDREN'S HOSPITAL CORPORATIONA Framework for Integrating Multiple Data Sources for Modeling and Forecasting of Infectious Diseases
PAGUIRIGAN, AMYFRED HUTCHINSON CANCER RESEARCH CENTERConnecting Single Cell Heterogeneity to Clinical Descriptors of Clonal Evolution in Acute Myeloid Leukemia
PARK, SOOJINCOLUMBIA UNIVERSITY HEALTH SCIENCESMultiparametric Prediction of Vasospasm after Subarachnoid Hemorrhage
PEARSON, JOHNDUKE UNIVERSITYNonparametric Bayes Methods for Big Data in Neuroscience
PROKOP, JEREMYHUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGYUsing a Sequence-to-Structure-to-Function Approach to Functionally Characterize Protein Coding Missense Mutations in the Human and Rat Genomes
SCHMITT, JAMES EUNIVERSITY OF PENNSYLVANIAINGOT: a family of statistical computing algorithms for hypothesis-driven imaging genomic and longitudinal neuroimaging analysis
VAN PANHUIS, WILLEM GIJSBERTUNIVERSITY OF PITTSBURGHData integration for global population health through dynamic models
WAGENAAR, JOOST BUNIVERSITY OF PENNSYLVANIADeveloping Cloud-based tools for Big Neural Data

 

BD2K-LINCS-Perturbation Data Coordination and Integration Center (DCIC) (U54) RFA-HG-14-001
PI NameInstitution NameTitle
GOLUB, TODD R. (contact)
SUBRAMANIAN, ARAVIND
THE BROAD INSTITUTE, INC.LINCS Data Coordination and Integration Center
MA'AYAN, AVI (contact)
MEDVEDOVIC, MARIO
SCHURER, STEPHAN C
ICAHN SCHOOL OF MEDICINE AT MOUNT SINAIData Coordination and Integration Center for LINCS-BD2K

 

 

Centers of Excellence for Big Data Computing in the Biomedical Sciences (U54) RFA-HG-13-009
PI NameInstitution NameTitle
COOPER, GREGORY F. (contact)
BAHAR, IVET
BERG, JEREMY M
UNIVERSITY OF PITTSBURGH AT PITTSBURGHCenter for causal Modeling and discovery of Biomedical Knowledge from Big Data
CRAVEN, MARK WUNIVERSITY OF WISCONSIN-MADISONThe Center for Predictive Computational Phenotyping-1 Overall
DELP, SCOTT LSTANFORD UNIVERSITYMobility Data Integration to Insight
HAN, JIAWEI (contact) 
SINHA, SAURABH 
SONG, JUN S
WEINSHILBOUM, RICHARD M.
UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGNKnowEng, a Scalable Knowledge Engine for Large-Scale Genomic Data-OVERALL
HAUSSLER, DAVID H (contact) 
PATTERSON, DAVID
VAN 'T VEER, LAURA J.
UNIVERSITY OF CALIFORNIA SANTA CRUZCenter for Big Data in Translational Genomics
KOHANE, ISAAC SHARVARD MEDICAL SCHOOLPatient-Centered Information Commons
KUMAR, SANTOSHUNIVERSITY OF MEMPHISCenter of Excellence for Mobile Sensor Data-to-Knowledge (MD2K) - OVERALL
MUSEN, MARK ASTANFORD UNIVERSITYCenter for Expanded Data Annotation and Retrieval (CEDAR) - Overall
PING, PEIPEI (contact)
LINDSEY, MERRY L
SU, ANDREW I
WATSON, KAROL E
UNIVERSITY OF CALIFORNIA LOS ANGELESA Community Effort to Translate Protein Data to Knowledge: An Integrated Platform
THOMPSON, PAUL MUNIVERSITY OF SOUTHERN CALIFORNIAENIGMA Center for Worldwide Medicine, Imaging & Genomics
TOGA, ARTHUR WUNIVERSITY OF SOUTHERN CALIFORNIABig Data for Discovery Science

This page last reviewed on March 7, 2024