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Big Data to Knowledge (BD2K) Community-Based Data and Metadata Standards Efforts (R24) RFA-ES-16-010
PI Name Institution Name Title
DEUTSCH, ERIC INSTITUTE FOR SYSTEMS BIOLOGY Advancing data and metadata standards for proteomics mass spectra
PETERS, BJOERN (contact) 
MUNGALL, CHRISTOPHER J		 LA JOLLA INST FOR ALLERGY & IMMUNOLGY Services to support the OBO foundry standards
SIM, IDA UNIVERSITY OF CALIFORNIA, SAN FRANCISCO Open mHealth: Community-Based Data and Metadata Standards for Mobile Health

 

BD2K Support for Meetings of Data Science Related Organizations (U13) RFA-CA-16-020
PI Name Institution Name Title
HAENDEL, MELISSA A (contact) 
ROBINSON, PETER NICHOLAS		 OREGON HEALTH & SCIENCE UNIVERSITY Forums for Integrative Phenomics
 

 

BD2K Research Education Curriculum Development:  Data Science Overview for Biomedical Scientists (R25) RFA-ES-16-011
PI Name Institution Name Title
SARKAR, INDRA NEIL (contact) 
BROCK, JEFFREY 
GATSONIS, CONSTANTINE A 
ISTRAIL, SORIN C. 
SANDSTEDE, BJORN		 BROWN UNIVERSITY Training and Teaching for Transforming Big Data to Knowledge

 

BD2K Enhancing Diversity in Biomedical Data Science (R25) RFA-MD-16-002
PI Name Institution Name Title
BAI, YONGSHENG (contact) 
COOMBES, KEVIN ROBERT 
HUANG, KUN		 INDIANA STATE UNIVERSITY BD4ISU: Big Data for Indiana State University
GIANNOPOULOU, EVGENIA (contact) 
PATHAK, JYOTISHMAN		 NEW YORK CITY COLLEGE OF TECHNOLOGY City Tech-WCM Big Data Training Program in Biomedical Informatics
MARQUEZ-MAGANA, LETICIA MARIA (contact) 
AKOM, ANTWI AARON		 SAN FRANCISCO STATE UNIVERSITY     HEART & SOUL: Enabling full representation in biomedical Big Data science

 

Big Data to Knowledge (BD2K) Enhancing the Efficiency and Effectiveness of Digital Data Curation for Biomedical Big Data (U01) RFA-LM-17-001
PI Name Institution Name Title
HADLEY, DEXTER D UNIVERSITY OF CALIFORNIA, SAN FRANCISCO Crowd-Assisted Deep Learning (CrADLe) Digital Curation to Translate Big Data into Precision Medicine
SCHÜRER, STEPHAN C (contact) 
BUNIN, BARRY A 
MUSEN, MARK A		 UNIVERSITY OF MIAMI SCHOOL OF MEDICINE Unifying Templates, Ontologies and Tools to Achieve Effective Annotation of Bioassay Protocols
STERNBERG, PAUL WARREN (contact) 
SCHEDL, TIM		 CALIFORNIA INSTITUTE OF TECHNOLOGY Streamlined capture and curation of unpublished data

 

BD2K Mentored Career Development Award in Biomedical  Big Data Science for Clinicians and Doctorally Prepared Scientists (K01) RFA-ES-16-002
PI Name Institution Name Title
CHEN, BIN UNIVERSITY OF CALIFORNIA, SAN FRANCISCO Integrating transcriptomic, proteomic and pharmacogenomic data to inform individualized therapy in cancers
MELAMED, RACHEL DANIA UNIVERSITY OF CHICAGO Using clinical data to identify FDA-approved drugs for cancer prevention and therapeutic repurposing
SUL, JAE HOON UNIVERSITY OF CALIFORNIA LOS ANGELES A computational genomics approach to identify roles of rare genetic variants in psychiatric disorders and gene expression

 

BD2K Open Educational Resources for Skills Development in Biomedical Big Data Science (R25) RFA-HG-16-016
PI Name Institution Name Title
COOK, DIANE JOYCE WASHINGTON STATE UNIVERSITY Development of an Online Course Suite in Tools for Analysis of Sensor-Based Behavioral Health Data (AHA!)

 

Big Data to Knowledge (BD2K) Development of Software Tools and Methods for Biomedical Big Data in Targeted Areas of High Need (U01) RFA-CA-15-017
PI Name Institution Name Title

CAMPBELL, WALTER SCOTT

 UNIVERSITY OF NEBRASKA MEDICAL CENTER Deploying ONC national Standards in Support of Metadata for Big Data Research Warehouse Management of Repurposed Laboratory, Pathology & Patient Findings Data From the EHR.
CLARK, TIMOTHY W MASSACHUSETTS GENERAL HOSPITAL Argumentation and linked-metadata services for reproducible target validation
JIANG, GUOQIAN MAYO CLINIC ROCHESTER Tools for standardizing clinical research metadata using HL7 FHIR
GERSTEIN, MARK BENDER YALE UNIVERSITY Methods and Software to Enhance Genomic Privacy and Sharing of RNA-Seq Data
MUNGALL, CHRISTOPHER J UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB An Intelligent Concept Agent for Assisting with the Application of Metadata
STELLING, JOHN BRIGHAM AND WOMEN'S HOSPITAL Integrating the worlds microbiology laboratories into a global microbial surveillance system
TANG, HAIXU T. (contact) 
WANG, XIAOFENG		 INDIANA UNIVERSITY BLOOMINGTON Encryption methods and software for privacy-preserving analysis of biomedical data
 
TAO, CUI  UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON Metadata applications on informed content to facilitate biorepository data regulation and sharing
TOH, DARREN HARVARD PILGRIM HEALTH CARE, INC. Privacy-protecting distributed analysis of biomedical big data
TROPSHA, ALEXANDER UNIV OF NORTH CAROLINA CHAPEL HILL Drug Repurposing for Cancer Therapy: From Man to Molecules to Man

 

Big Data to Knowledge (BD2K) Advancing Biomedical Science Using Crowdsourcing and Interactive Digital Media (UH2) RFA-CA-15-006
PI Name Institution Name Title

ANDERSON, ALEXANDER 
ROBERTSON ALLAN 

 H. LEE MOFFITT CANCER CTR & RES INST Crowdsourcing optimal cancer treatment strategies that maximize efficacy and minimize toxicity
COOPER, SETH EVERETT (contact) 
KHATIB, FIRAS		 NORTHEASTERN UNIVERSITY Applying Protein Databases to Crowdsourcing Structural Protein Design
FABBRI, DANIEL VANDERBILT UNIVERSITY Crowd Sourcing Labels From Electronic Medical Records to Enable Biomedical Research
HADLEY, DEXTER D UNIVERSITY OF CALIFORNIA, SAN FRANCISCO Crowd-sourcing A STAR Functional Genomic Characterization of Cancer with Open Big Data
INTILLE, STEPHEN S NORTHEASTERN UNIVERSITY Crowd-Sourced Annotation of Longitudinal Sensor Data to Enhance Data-Driven Precision Medicine for Behavioral Health
IWASA, JANET UNIVERSITY OF UTAH Quorum: An Open Platform for Crowdsourcing Visual Data Analysis
MURALI, T. M. (contact) 
LUTHER, KURT		 VIRGINIA POLYTECHNIC INST AND ST UNIV GraphCrowd: Using Crowdsourced Design to Visualize Effects of Environmental Chemicals on Signaling Networks
SEUNG, HYUNJUNE SEBASTIAN (contact)
ROBINSON, AMY  		 PRINCETON UNIVERSITY
Retinal connectome: mobile game and crowdsourcing algorithms for EyeWire II
WALLACE, BYRON CASEY (contact) 
IVES, ZACHARY  
NENKOVA, ANI		 UNIVERSITY OF TEXAS, AUSTIN Crowdsourcing Mark-up of the Medical Literature to Support Evidence-Based Medicine and Develop Automated Annotation Capabilities
YOSHIDA, HIROYUKI MASSACHUSETTS GENERAL HOSPITAL Crowdsourcing-aided machine learning for colon cancer prevention

 

Courses for Skills Development in Biomedical Big Data Science (R25) RFA-HG-14-008
PI Name Institution Name Title

CHUANG, JEFFREY HSU-MIN

 THE JACKSON LABORATORY Big Genomic Data Skills Training for Professors
FOWLKES, CHARLESS (contact) 
DIGMAN, MICHELLE		 UNIVERSITY OF CALIFORNIA-IRVINE The Big DIPA: Data Image Processing and Analysis
HOFFMANN, ALEXANDER (contact) 
PAPP, JEANETTE CHRISTINE		 UNIVERSITY OF CALIFORNIA LOS ANGELES NGS Data Analysis Skills for the Biosciences Pipeline
KOVATCH, PATRICIA (contact) 
DUDLEY, JOEL THOMAS 
HANSS, BASIL G		 ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI Community Research Education and Engagement for Data Science (CREEDS)
MUKHERJEE, BHRAMAR (contact) 
JOHNSON, TIMOTHY D 
MOZAFARI, BARZAN  
NGUYEN, LONG		 UNIVERSITY OF MICHIGAN Transforming Analytical Learning in the Era of Big Data
OWZAR, KOUROS (contact)
CHAN, CLIBURN C		 DUKE UNIVERSITY A Hands-on, Integrative Next-Generation Sequencing Course: Design, Experiment, and Analysis
RECHT, MICHAEL P (contact) 
BRAITHWAITE, RONALD SCOTT		 NEW YORK UNIVERSITY SCHOOL OF MEDICINE Discovering the Value of Imaging: A Collaborative Training Program in Comparative Effectiveness for the Field of Radiology
SAMORE, MATTHEW H UNIVERSITY OF UTAH Curriculum in Biomedical Big Data: Skill Development and Hands-On Training
SHAW, JOSEPH R. MOUNT DESERT ISLAND BIOLOGICAL LAB Establishing a Network of Skilled BD2K Practitioners: The Summer Workshop on Population-Scale Genomic Studies of Environmental Stress
VITEK, OLGA NORTHEASTERN UNIVERSITY Summer School: Big Data and Statistics for Bench Scientists
ZHANG, MIN PURDUE UNIVERSITY Big Data Training for Translational Omics Research

 

Biomedical Data Science Training Coordination Center (U24) RFA-ES-15-004
PI Name Institution Name Title

VAN HORN, JOHN DARRELL   

 UNIVERSITY OF SOUTHERN CALIFORNIA  Big Data U: Empowering Modern Biomedicine via Personalized Training

 

NIH Big Data to Knowledge (BD2K) Initiative Research Education: Massive Open Online Course (MOOC) on Data Management for Biomedical Big Data (R25) RFA-LM-15-001
PI Name Institution Name Title

HADDAD, BASSEM R (contact) 
GUSEV, YURIY  
MCGARVEY, PETER      

 GEORGETOWN UNIVERSITY Demystifying Biomedical Big Data: A User’s Guide
MARTIN, ELAINE R UNIV OF MASSACHUSETTS MED SCH WORCESTER Development of a Best Practices in Research Data Management Massive Open Online Course (MOOC)

 

NIH Big Data to Knowledge (BD2K) Enhancing Diversity in Biomedical Data Science (R25) RFA-MD-15-005
PI Name Institution Name Title

CANNER, JUDITH ELENA

 UNIVERSITY CORPORATION AT MONTEREY BAY Innovative Research Education and Articulation in the Preparation of Under-represented and First Generation Students for Careers in Biomedical Big Data Science
GARCIA-ARRARAS, JOSE E (contact) 
ORDONEZ-FRANCO, PATRICIA  
PÉREZ, MARIA-EGLEE		 UNIVERSITY OF PUERTO RICO RIO PIEDRAS Increasing Diversity in Interdisciplinary BD2K (IDI-BD2K)
MCELIGOT, ARCHANA J CSU FULLERTON AUXILIARY SERVICES CORPORATION Big Data Discovery and Diversity through Research Education Advancement and Partnerships (BD3-REAP)
QIAN, LEI FISK UNIVERSITY Fisk University/UIUC-Mayo KnowENG BD2K Center R25 Partnership

 

NIH Big Data to Knowledge (BD2K) Initiative Research Education: Open Educational Resources for Sharing, Annotating and Curating Biomedical Big Data (R25) RFA-LM-15-002
PI Name Institution Name Title

LAWSON, CATHERINE L

 RUTGERS, THE STATE UNIV OF N.J. Enabling Data Science in Biology
SEYMOUR, ANNE (contact) 
LEHMANN, HAROLD P		 JOHNS HOPKINS UNIVERSITY Training & Tools for Informationists to Facilitate Sharing of Next Generation Sequencing Data
SURKIS, ALISA (contact) 
READ, KEVIN		 NEW YORK UNIVERSITY SCHOOL OF MEDICINE Preparing Medical Librarians to Understand and Teach Research Data Management

 

Development of Software and Analysis Methods for Biomedical Big Data in Targeted Areas of High Need (U01) RFA-HG-14-020
PI Name Institution Name Title
BILGIN, ALI UNIVERSITY OF ARIZONA Task-Specific Compression for Biomedical Big Data
DONG, HONG-WEI UNIVERSITY OF SOUTHERN CALIFORNIA From Terabytes of Pixels to Intuitive Brain Networks
HUANG, ERICH S. DUKE UNIVERSITY Flexible & Executable Provenance in Data-Intensive Biomedical Research: A Flexible Research Data Service
IVES, ZACHARY(contact)
KIM, JUNHYONG		 UNIVERSITY OF PENNSYLVANIA Approximating and Reasoning about Data Provenance
KOYUTURK, MEHMET CASE WESTERN RESERVE UNIVERSITY Theoretical Foundations and Software Infrastructure for Biological Network Databases
MADHAVAN, SUBHA GEORGETOWN UNIVERSITY MACE2K - Molecular And Clinical Extraction: A Natural Language Processing Tool for Personalized Medicine
MILENKOVIC, OLGICA (contact)
WEISSMAN, TSACHY		 UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN Genomic Compression: From Information Theory to Parallel Algorithms
MINOR, WLADEK UNIVERSITY OF VIRGINIA Integrated resource for reproducibility in macromolecular crystallography
NOVEMBRE, JOHN THE UNIVERSITY OF CHICAGO Tools for Visualization of Geographic Structure in Population Genomic Data
PARK, PETER J PRESIDENT & FELLOWS OF HARVARD COLLEGE Visual Analysis of Genomic and Clinical Data from Large Patient Cohorts
PICONE, JOSEPH (contact)
HARABAGIU, SANDA MARIA
OBEID, IYAD		 TEMPLE UNIV OF THE COMMONWEALTH Automatic discovery and processing of EEG cohorts from clinical records
ROSE, PETER W UNIVERSITY OF CALIFORNIA SAN DIEGO Compressive Structural BioInformatics: High Efficiency 3D Structure Compression
SAHOO, SATYA SANKET CASE WESTERN RESERVE UNIVERSITY A PROV standard-based data source agnostic provenance engine for Big Data analytics
SCHLIEP, ALEXANDER RUTGERS, THE STATE UNIVERSITY OF NEW JERSEY Meaningful Data Compression and Reduction of High-Throughput Sequencing Data
WANG, WEI (contact) 
CONDIE, TYSON  
YOUNG, SEAN		 UNIVERSITY OF CALIFORNIA LOS ANGELES Mining the Social Web to Monitor Public Health and HIV Risk Behaviors
WEBER, GRIFFIN M PRESIDENT & FELLOWS OF HARVARD COLLEGE Visualizing healthcare system dynamics in biomedical Big Data
WU, CHUNLEI THE SCRIPPS RESEARCH INSTITUTE Community Platform for Data Wrangling of Gene and Genetic Variant Annotations
ZHU, JUN ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI Developing methods for curating multi-omics data

 

Revisions to Add Biomedical Big Data Training to Active NLM Institutional Training Grants in Biomedical Informatics (T15) RFA-HG-14-006
PI Name Institution Name Title

HRIPCSAK, GEORGE M.

 COLUMBIA UNIVERSITY Training in Biomedical Informatics at Columbia University
PAYNE, PHILIP R.O. (contact) 
CATALYUREK, UMIT V.		 OHIO STATE UNIVERSITY MIDAs: Multi-modeling and Integrative Data Analytics Training Program

 

Predoctoral Training in Biomedical Big Data Science (T32) RFA-HG-14-004
PI Name Institution Name Title
ALTMAN, RUSS BIAGIO STANFORD UNIVERSITY Biomedical Data Science Graduate Training at Stanford
AMOS, CHRISTOPHER I DARTMOUTH COLLEGE Quantitative Biomedical Sciences at Dartmouth
DANIELS, MICHAEL J (contact) 
DHILLON, INDERJIT  
MEYERS, LAUREN ANCEL		 UNIVERSITY OF TEXAS, AUSTIN PREDOCTORAL TRAINING IN BIOMEDICAL BIG DATA SCIENCE
KOSOROK, MICHAEL R (contact)
FOREST, MARK GREGORY		 UNIV OF NORTH CAROLINA CHAPEL HILL Big Data to Knowledge Training Program
MALIN, BRADLEY A. (contact) 
BLUME, JEFFREY  
GADD, CYNTHIA S		 VANDERBILT UNIVERSITY BIDS: Vanderbilt Training Program in BIg Biomedical Data Science
NEWTON, MICHAEL A (contact) 
DEWEY, COLIN NOEL 
GOULD, MICHAEL N		 UNIVERSITY OF WISCONSIN-MADISON Bio-Data Science Training Program
NOBLE, WILLIAM STAFFORD (contact) 
DANIEL, THOMAS L. 
FAIRHALL, ADRIENNE L 
WITTEN, DANIELA 		 UNIVERSITY OF WASHINGTON University of Washington PhD Training in Big Data for Genomics and Neuroscience
PAPIN, JASON (contact) 
BROWN, DONALD E 
LOUGHRAN, THOMAS PATRICK 
SKADRON, KEVIN		 UNIVERSITY OF VIRGINIA Transdisciplinary Big Data Science Training at UVA
PELLEGRINI, MATTEO UNIVERSITY OF CALIFORNIA LOS ANGELES Biomedical Big Data Training Grant
QUACKENBUSH, JOHN HARVARD SCHOOL OF PUBLIC HEALTH Statistical and Quantitative Training in Big Data Health Science
RITCHIE, MARYLYN D. (contact) 
HONAVAR, VASANT G. 
LI, RUNZE		 PENNSYLVANIA STATE UNIVERSITY-UNIV PARK Penn State Biomedical Big Data to Knowledge (B2D2K) Training Program
SHYU, CHI-REN UNIVERSITY OF MISSOURI-COLUMBIA Massive and Complex Data Analytics Pre-Doctoral Training in One Health
STARREN, JUSTIN B. (contact) 
KLABJAN, DIEGO		 NORTHWESTERN UNIVERSITY Predoctoral Training Program in Biomedical Data Driven Discovery (BD3)
VANDERLAAN, MARK J (contact) 
JORDAN, MICHAEL  
NIELSEN, RASMUS		 UNIVERSITY OF CALIFORNIA BERKELEY Biomedical Big Data Training Program at UC Berkeley

 

Open Educational Resources for Biomedical Big Data (R25) RFA-HG-14-009
PI Name Institution Name Title
AMARO, ROMMIE E (contact)
ALTINTAS DE CALLAFON, ILKAY		 UNIVERSITY OF CALIFORNIA SAN DIEGO AN OPEN RESOURCE FOR COLLABORATIVE BIOMEDICAL BIG DATA TRAINING
BOHLAND, JASON W (contact) 
EDEN, URI TZVI 
KRAMER, MARK ALAN		 BOSTON UNIVERSITY An open, online course in neuronal data analysis for the practicing neuroscientist
CAFFO, BRIAN SCOTT JOHNS HOPKINS UNIVERSITY Big Data education for the masses: MOOCs, modules, & intelligent tutoring systems
CHURCHILL, GARY A  JACKSON LABORATORY Curriculum Development and Training for Systems Genetics
ELGIN, SARAH C.R. GEORGE WASHINGTON UNIVERSITY A Genome Browser On-Ramp to Engage Biologists with Big Data
HERSH, WILLIAM R (contact)
HAENDEL, MELISSA A
MCWEENEY, SHANNON K.		 OREGON HEALTH & SCIENCE UNIVERSITY Adding Big Data Open Educational Resources to the ONC Health IT Curriculum
IRIZARRY, RAFAEL ANGEL HARVARD SCHOOL OF PUBLIC HEALTH Biomedical Data Science Online Curriculum on HarvardX 
LEE, CHRISTOPHER   UNIVERSITY OF CALIFORNIA LOS ANGELES The BD2K Concept Network: open sharing of active-learning and tools online
PEVZNER, PAVEL A  UNIVERSITY OF CALIFORNIA SAN DIEGO Integrated Active Learning Framework for Biomedical BD2K

 

Courses for Skills Development in Biomedical Big Data Science (R25) RFA-HG-14-008
PI Name Institution Name Title
CHUANG, JEFFREY HSU-MIN THE JACKSON LABORATORY Big Genomic Data Skills Training for Professors
DORR, DAVID A. (contact) 
HAENDEL, MELISSA A 
MCWEENEY, SHANNON K.		 OREGON HEALTH & SCIENCE UNIVERSITY OHSU Informatics Analytics BD2K Skill Course 
FOWLKES, CHARLESS (contact) 
DIGMAN, MICHELLE		 UNIVERSITY OF CALIFORNIA-IRVINE The Big DIPA: Data Image Processing and Analysis
HOFFMANN, ALEXANDER (contact) 
PAPP, JEANETTE CHRISTINE		 UNIVERSITY OF CALIFORNIA LOS ANGELES NGS Data Analysis Skills for the Biosciences Pipeline
KOVATCH, PATRICIA (contact) 
DUDLEY, JOEL THOMAS 
HANSS, BASIL G 		 ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI Community Research Education and Engagement for Data Science (CREEDS)
MUKHERJEE, BHRAMAR (contact) 
JOHNSON, TIMOTHY D 
MOZAFARI, BARZAN  
NGUYEN, LONG		 UNIVERSITY OF MICHIGAN Transforming Analytical Learning in the Era of Big Data
PATHAK, JYOTISHMAN (contact)
CHUTE, CHRISTOPHER G
NEUHAUSER, CLAUDIA M.		 MAYO CLINIC ROCHESTER Big Data Coursework for Computational Medicine
RECHT, MICHAEL P (contact) 
BRAITHWAITE, RONALD SCOTT		 NEW YORK UNIVERSITY SCHOOL OF MEDICINE Discovering the Value of Imaging: A Collaborative Training Program in Comparative Effectiveness for the Field of Radiology
SHAW, JOSEPH R.  MOUNT DESERT ISLAND BIOLOGICAL LAB Establishing a Network of Skilled BD2K Practitioners: The Summer Workshop on Population-Scale Genomic Studies of Environmental Stress
SHOJAIE, ALI (contact)
WITTEN, DANIELA		 UNIVERSITY OF WASHINGTON Summer Institute for Statistics of Big Data
ZHANG, MIN PURDUE UNIVERSITY Big Data Training for Translational Omics Research

 

Mentored Career Development Award in Biomedical Big Data Science for Clinicians and Doctorally Prepared Scientists (K01) RFA-HG-14-007
PI Name Institution Name Title
AVANTS, BRIAN  UNIVERSITY OF PENNSYLVANIA Imaging genomics bases of pediatric executive functioning
CALLCUT, RACHAEL A  UNIVERSITY OF CALIFORNIA, SAN FRANCISCO Advancing Outcome Metrics in Trauma Surgery Through Utilization of Big Data
CHEN, JONATHAN HAILIN STANFORD UNIVERSITY Data-Mining Clinical Decision Support from Electronic Health Records
COFFMAN, DONNA LYN PENNSYLVANIA STATE UNIVERSITY-UNIV PARK Novel Methods to Identify Momentary Risk States for Stress & Physical Inactivity
FARHAT, MAHA MASSACHUSETTS GENERAL HOSPITAL New Tools for the interpretation of Pathogen Genomic Data with a focus on Mycobacterium
GARMIRE, LANA X UNIVERSITY OF HAWAII AT MANOA An Integrative Bioinformatics Approach to Study Single Cancer Cell Heterogeneity
GLISKE, STEPHEN V UNIVERSITY OF MICHIGAN Epileptic biomarkers and big data: identifying brain regions to resect in patients with refractory epilepsy
ITAKURA, HARUKA STANFORD UNIVERSITY Multi-scale data integration frameworks to improve cancer outcomes
JOHNSON, MICHAEL HIROSHI JOHNS HOPKINS UNIVERSITY Molecular Analysis and Precision Medicine in Renal Cell Carcinoma
LANDAU, DAN DANA-FARBER CANCER INST The role of epigenetic heterogeneity in CLL evolution 
NEMATI, SHAMIM EMORY UNIVERSITY Deep Learning and Streaming Analytics for Prediction of Adverse Events in the ICU
LEE, GEORGE CASE WESTERN RESERVE UNIVERSITY Big data convergence of pathology and omics for disease prognosis
NGUYEN, QUYNH UNIVERSITY OF UTAH HashtagHealth: A Social Media Big Data Resource for Neighborhood Effects Research
NSOESIE, ELAINE O. CHILDREN'S HOSPITAL CORPORATION A Framework for Integrating Multiple Data Sources for Modeling and Forecasting of Infectious Diseases
PAGUIRIGAN, AMY FRED HUTCHINSON CANCER RESEARCH CENTER Connecting Single Cell Heterogeneity to Clinical Descriptors of Clonal Evolution in Acute Myeloid Leukemia

PARK, SOOJIN

 COLUMBIA UNIVERSITY HEALTH SCIENCES Multiparametric Prediction of Vasospasm after Subarachnoid Hemorrhage
PEARSON, JOHN  DUKE UNIVERSITY Nonparametric Bayes Methods for Big Data in Neuroscience
PROKOP, JEREMY HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY Using a Sequence-to-Structure-to-Function Approach to Functionally Characterize Protein Coding Missense Mutations in the Human and Rat Genomes
SCHMITT, JAMES E UNIVERSITY OF PENNSYLVANIA INGOT: a family of statistical computing algorithms for hypothesis-driven imaging genomic and longitudinal neuroimaging analysis
VAN PANHUIS, WILLEM GIJSBERT UNIVERSITY OF PITTSBURGH Data integration for global population health through dynamic models
WAGENAAR, JOOST B UNIVERSITY OF PENNSYLVANIA Developing Cloud-based tools for Big Neural Data

 

BD2K-LINCS-Perturbation Data Coordination and Integration Center (DCIC) (U54) RFA-HG-14-001
PI Name Institution Name Title
GOLUB, TODD R. (contact)
SUBRAMANIAN, ARAVIND		 THE BROAD INSTITUTE, INC. LINCS Data Coordination and Integration Center
MA'AYAN, AVI (contact)
MEDVEDOVIC, MARIO
SCHURER, STEPHAN C		 ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI Data Coordination and Integration Center for LINCS-BD2K

 

 

Centers of Excellence for Big Data Computing in the Biomedical Sciences (U54) RFA-HG-13-009
PI Name Institution Name Title
COOPER, GREGORY F. (contact)
BAHAR, IVET
BERG, JEREMY M 		 UNIVERSITY OF PITTSBURGH AT PITTSBURGH Center for causal Modeling and discovery of Biomedical Knowledge from Big Data
CRAVEN, MARK W  UNIVERSITY OF WISCONSIN-MADISON The Center for Predictive Computational Phenotyping-1 Overall
DELP, SCOTT L  STANFORD UNIVERSITY Mobility Data Integration to Insight
HAN, JIAWEI (contact) 
SINHA, SAURABH 
SONG, JUN S
WEINSHILBOUM, RICHARD M. 		 UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN KnowEng, a Scalable Knowledge Engine for Large-Scale Genomic Data-OVERALL
HAUSSLER, DAVID H (contact) 
PATTERSON, DAVID
VAN 'T VEER, LAURA J. 		 UNIVERSITY OF CALIFORNIA SANTA CRUZ Center for Big Data in Translational Genomics
KOHANE, ISAAC S HARVARD MEDICAL SCHOOL Patient-Centered Information Commons
KUMAR, SANTOSH UNIVERSITY OF MEMPHIS Center of Excellence for Mobile Sensor Data-to-Knowledge (MD2K) - OVERALL
MUSEN, MARK A  STANFORD UNIVERSITY Center for Expanded Data Annotation and Retrieval (CEDAR) - Overall
PING, PEIPEI (contact)
LINDSEY, MERRY L
SU, ANDREW I
WATSON, KAROL E 		 UNIVERSITY OF CALIFORNIA LOS ANGELES A Community Effort to Translate Protein Data to Knowledge: An Integrated Platform
THOMPSON, PAUL M  UNIVERSITY OF SOUTHERN CALIFORNIA ENIGMA Center for Worldwide Medicine, Imaging & Genomics
TOGA, ARTHUR W  UNIVERSITY OF SOUTHERN CALIFORNIA Big Data for Discovery Science

 

 

 

 

 

 

 

This page last reviewed on September 13, 2023

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