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Funded Research 

The Funded Research presented on this page represents the components of NIH Big Data Knowledge that receive NIH Common Fund support. For a full listing of Big Data to Knowledge funded research and additional information please visit: http://bd2k.nih.gov/.

Courses for Skills Development in Biomedical Big Data Science (R25) RFA-HG-14-008
PI Name Institution Name Title

CHUANG, JEFFREY HSU-MIN

THE JACKSON LABORATORY Big Genomic Data Skills Training for Professors
FOWLKES, CHARLESS (contact) 
DIGMAN, MICHELLE
UNIVERSITY OF CALIFORNIA-IRVINE The Big DIPA: Data Image Processing and Analysis
HOFFMANN, ALEXANDER (contact) 
PAPP, JEANETTE CHRISTINE
UNIVERSITY OF CALIFORNIA LOS ANGELES NGS Data Analysis Skills for the Biosciences Pipeline
KOVATCH, PATRICIA (contact) 
DUDLEY, JOEL THOMAS 
HANSS, BASIL G
ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI Community Research Education and Engagement for Data Science (CREEDS)
MUKHERJEE, BHRAMAR (contact) 
JOHNSON, TIMOTHY D 
MOZAFARI, BARZAN  
NGUYEN, LONG
UNIVERSITY OF MICHIGAN Transforming Analytical Learning in the Era of Big Data
RECHT, MICHAEL P (contact) 
BRAITHWAITE, RONALD SCOTT
NEW YORK UNIVERSITY SCHOOL OF MEDICINE Discovering the Value of Imaging: A Collaborative Training Program in Comparative Effectiveness for the Field of Radiology
SHAW, JOSEPH R. MOUNT DESERT ISLAND BIOLOGICAL LAB Establishing a Network of Skilled BD2K Practitioners: The Summer Workshop on Population-Scale Genomic Studies of Environmental Stress
ZHANG, MIN PURDUE UNIVERSITY Big Data Training for Translational Omics Research
 
 
Biomedical Data Science Training Coordination Center (U24) RFA-ES-15-004
PI Name Institution Name Title

VAN HORN, JOHN DARRELL   

UNIVERSITY OF SOUTHERN CALIFORNIA  Big Data U: Empowering Modern Biomedicine via Personalized Training
 
 
NIH Big Data to Knowledge (BD2K) Initiative Research Education: Massive Open Online Course (MOOC) on Data Management for Biomedical Big Data (R25) RFA-LM-15-001
PI Name Institution Name Title

HADDAD, BASSEM R (contact) 
GUSEV, YURIY  
MCGARVEY, PETER      

GEORGETOWN UNIVERSITY Demystifying Biomedical Big Data: A User’s Guide
MARTIN, ELAINE R UNIV OF MASSACHUSETTS MED SCH WORCESTER Development of a Best Practices in Research Data Management Massive Open Online Course (MOOC)
 
 
NIH Big Data to Knowledge (BD2K) Enhancing Diversity in Biomedical Data Science (R25) RFA-MD-15-005
PI Name Institution Name Title

CANNER, JUDITH ELENA

UNIVERSITY CORPORATION AT MONTEREY BAY Innovative Research Education and Articulation in the Preparation of Under-represented and First Generation Students for Careers in Biomedical Big Data Science
GARCIA-ARRARAS, JOSE E (contact) 
ORDONEZ-FRANCO, PATRICIA  
PÉREZ, MARIA-EGLEE
UNIVERSITY OF PUERTO RICO RIO PIEDRAS Increasing Diversity in Interdisciplinary BD2K (IDI-BD2K)
MCELIGOT, ARCHANA J CSU FULLERTON AUXILIARY SERVICES CORPORATION Big Data Discovery and Diversity through Research Education Advancement and Partnerships (BD3-REAP)
QIAN, LEI FISK UNIVERSITY Fisk University/UIUC-Mayo KnowENG BD2K Center R25 Partnership
 
 
NIH Big Data to Knowledge (BD2K) Initiative Research Education: Open Educational Resources for Sharing, Annotating and Curating Biomedical Big Data (R25) RFA-LM-15-002
PI Name Institution Name Title

LAWSON, CATHERINE L

RUTGERS, THE STATE UNIV OF N.J. Enabling Data Science in Biology
SEYMOUR, ANNE (contact) 
LEHMANN, HAROLD P
JOHNS HOPKINS UNIVERSITY Training & Tools for Informationists to Facilitate Sharing of Next Generation Sequencing Data
SURKIS, ALISA (contact) 
READ, KEVIN
NEW YORK UNIVERSITY SCHOOL OF MEDICINE Preparing Medical Librarians to Understand and Teach Research Data Management
 
 
Development of Software and Analysis Methods for Biomedical Big Data in Targeted Areas of High Need (U01) RFA-HG-14-020
PI Name Institution Name Title
BILGIN, ALI UNIVERSITY OF ARIZONA Task-Specific Compression for Biomedical Big Data
DONG, HONG-WEI UNIVERSITY OF SOUTHERN CALIFORNIA From Terabytes of Pixels to Intuitive Brain Networks
HUANG, ERICH S. DUKE UNIVERSITY Flexible & Executable Provenance in Data-Intensive Biomedical Research: A Flexible Research Data Service
IVES, ZACHARY(contact)
KIM, JUNHYONG
UNIVERSITY OF PENNSYLVANIA Approximating and Reasoning about Data Provenance
KOYUTURK, MEHMET CASE WESTERN RESERVE UNIVERSITY Theoretical Foundations and Software Infrastructure for Biological Network Databases
MADHAVAN, SUBHA GEORGETOWN UNIVERSITY MACE2K - Molecular And Clinical Extraction: A Natural Language Processing Tool for Personalized Medicine
MILENKOVIC, OLGICA (contact)
WEISSMAN, TSACHY
UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN Genomic Compression: From Information Theory to Parallel Algorithms
MINOR, WLADEK UNIVERSITY OF VIRGINIA Integrated resource for reproducibility in macromolecular crystallography
NOVEMBRE, JOHN THE UNIVERSITY OF CHICAGO Tools for Visualization of Geographic Structure in Population Genomic Data
PARK, PETER J PRESIDENT & FELLOWS OF HARVARD COLLEGE Visual Analysis of Genomic and Clinical Data from Large Patient Cohorts
PICONE, JOSEPH (contact)
HARABAGIU, SANDA MARIA
OBEID, IYAD
TEMPLE UNIV OF THE COMMONWEALTH Automatic discovery and processing of EEG cohorts from clinical records
ROSE, PETER W UNIVERSITY OF CALIFORNIA SAN DIEGO Compressive Structural BioInformatics: High Efficiency 3D Structure Compression
SAHOO, SATYA SANKET CASE WESTERN RESERVE UNIVERSITY A PROV standard-based data source agnostic provenance engine for Big Data analytics
SCHLIEP, ALEXANDER RUTGERS, THE STATE UNIVERSITY OF NEW JERSEY Meaningful Data Compression and Reduction of High-Throughput Sequencing Data
WANG, WEI (contact) 
CONDIE, TYSON  
YOUNG, SEAN
UNIVERSITY OF CALIFORNIA LOS ANGELES Mining the Social Web to Monitor Public Health and HIV Risk Behaviors
WEBER, GRIFFIN M PRESIDENT & FELLOWS OF HARVARD COLLEGE Visualizing healthcare system dynamics in biomedical Big Data
WU, CHUNLEI THE SCRIPPS RESEARCH INSTITUTE Community Platform for Data Wrangling of Gene and Genetic Variant Annotations
ZHU, JUN ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI Developing methods for curating multi-omics data
 
 
Revisions to Add Biomedical Big Data Training to Active NLM Institutional Training Grants in Biomedical Informatics (T15) RFA-HG-14-006
PI Name Institution Name Title

HRIPCSAK, GEORGE M.

COLUMBIA UNIVERSITY Training in Biomedical Informatics at Columbia University
PAYNE, PHILIP R.O. (contact) 
CATALYUREK, UMIT V.
OHIO STATE UNIVERSITY MIDAs: Multi-modeling and Integrative Data Analytics Training Program
 
 
Predoctoral Training in Biomedical Big Data Science (T32) RFA-HG-14-004
PI Name Institution Name Title
ALTMAN, RUSS BIAGIO STANFORD UNIVERSITY Biomedical Data Science Graduate Training at Stanford
AMOS, CHRISTOPHER I DARTMOUTH COLLEGE Quantitative Biomedical Sciences at Dartmouth
DANIELS, MICHAEL J (contact) 
DHILLON, INDERJIT  
MEYERS, LAUREN ANCEL
UNIVERSITY OF TEXAS, AUSTIN PREDOCTORAL TRAINING IN BIOMEDICAL BIG DATA SCIENCE
KOSOROK, MICHAEL R (contact)
FOREST, MARK GREGORY
UNIV OF NORTH CAROLINA CHAPEL HILL Big Data to Knowledge Training Program
MALIN, BRADLEY A. (contact) 
BLUME, JEFFREY  
GADD, CYNTHIA S
VANDERBILT UNIVERSITY BIDS: Vanderbilt Training Program in BIg Biomedical Data Science
NEWTON, MICHAEL A (contact) 
DEWEY, COLIN NOEL 
GOULD, MICHAEL N
UNIVERSITY OF WISCONSIN-MADISON Bio-Data Science Training Program
NOBLE, WILLIAM STAFFORD (contact) 
DANIEL, THOMAS L. 
FAIRHALL, ADRIENNE L 
WITTEN, DANIELA 
UNIVERSITY OF WASHINGTON University of Washington PhD Training in Big Data for Genomics and Neuroscience
PAPIN, JASON (contact) 
BROWN, DONALD E 
LOUGHRAN, THOMAS PATRICK 
SKADRON, KEVIN
UNIVERSITY OF VIRGINIA Transdisciplinary Big Data Science Training at UVA
PELLEGRINI, MATTEO UNIVERSITY OF CALIFORNIA LOS ANGELES Biomedical Big Data Training Grant
QUACKENBUSH, JOHN HARVARD SCHOOL OF PUBLIC HEALTH Statistical and Quantitative Training in Big Data Health Science
RITCHIE, MARYLYN D. (contact) 
HONAVAR, VASANT G. 
LI, RUNZE
PENNSYLVANIA STATE UNIVERSITY-UNIV PARK Penn State Biomedical Big Data to Knowledge (B2D2K) Training Program
SHYU, CHI-REN UNIVERSITY OF MISSOURI-COLUMBIA Massive and Complex Data Analytics Pre-Doctoral Training in One Health
STARREN, JUSTIN B. (contact) 
KLABJAN, DIEGO
NORTHWESTERN UNIVERSITY Predoctoral Training Program in Biomedical Data Driven Discovery (BD3)
VANDERLAAN, MARK J (contact) 
JORDAN, MICHAEL  
NIELSEN, RASMUS
UNIVERSITY OF CALIFORNIA BERKELEY Biomedical Big Data Training Program at UC Berkeley
 
 
Open Educational Resources for Biomedical Big Data (R25) RFA-HG-14-009
PI Name Institution Name Title
AMARO, ROMMIE E (contact)
ALTINTAS DE CALLAFON, ILKAY
UNIVERSITY OF CALIFORNIA SAN DIEGO AN OPEN RESOURCE FOR COLLABORATIVE BIOMEDICAL BIG DATA TRAINING
BOHLAND, JASON W (contact) 
EDEN, URI TZVI 
KRAMER, MARK ALAN
BOSTON UNIVERSITY An open, online course in neuronal data analysis for the practicing neuroscientist
CAFFO, BRIAN SCOTT JOHNS HOPKINS UNIVERSITY Big Data education for the masses: MOOCs, modules, & intelligent tutoring systems
ELGIN, SARAH C.R. GEORGE WASHINGTON UNIVERSITY A Genome Browser On-Ramp to Engage Biologists with Big Data
HERSH, WILLIAM R (contact)
HAENDEL, MELISSA A
MCWEENEY, SHANNON K.
OREGON HEALTH & SCIENCE UNIVERSITY Adding Big Data Open Educational Resources to the ONC Health IT Curriculum
IRIZARRY, RAFAEL ANGEL HARVARD SCHOOL OF PUBLIC HEALTH Biomedical Data Science Online Curriculum on HarvardX 
LEE, CHRISTOPHER   UNIVERSITY OF CALIFORNIA LOS ANGELES The BD2K Concept Network: open sharing of active-learning and tools online
PEVZNER, PAVEL A  UNIVERSITY OF CALIFORNIA SAN DIEGO Integrated Active Learning Framework for Biomedical BD2K
 
 
Courses for Skills Development in Biomedical Big Data Science (R25) RFA-HG-14-008
PI Name Institution Name Title
CHUANG, JEFFREY HSU-MIN THE JACKSON LABORATORY Big Genomic Data Skills Training for Professors
DORR, DAVID A. (contact) 
HAENDEL, MELISSA A 
MCWEENEY, SHANNON K.
OREGON HEALTH & SCIENCE UNIVERSITY OHSU Informatics Analytics BD2K Skill Course 
FOWLKES, CHARLESS (contact) 
DIGMAN, MICHELLE
UNIVERSITY OF CALIFORNIA-IRVINE The Big DIPA: Data Image Processing and Analysis
HOFFMANN, ALEXANDER (contact) 
PAPP, JEANETTE CHRISTINE
UNIVERSITY OF CALIFORNIA LOS ANGELES NGS Data Analysis Skills for the Biosciences Pipeline
KOVATCH, PATRICIA (contact) 
DUDLEY, JOEL THOMAS 
HANSS, BASIL G 
ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI Community Research Education and Engagement for Data Science (CREEDS)
MUKHERJEE, BHRAMAR (contact) 
JOHNSON, TIMOTHY D 
MOZAFARI, BARZAN  
NGUYEN, LONG
UNIVERSITY OF MICHIGAN Transforming Analytical Learning in the Era of Big Data
PATHAK, JYOTISHMAN (contact)
CHUTE, CHRISTOPHER G
NEUHAUSER, CLAUDIA M.
MAYO CLINIC ROCHESTER Big Data Coursework for Computational Medicine
RECHT, MICHAEL P (contact) 
BRAITHWAITE, RONALD SCOTT
NEW YORK UNIVERSITY SCHOOL OF MEDICINE Discovering the Value of Imaging: A Collaborative Training Program in Comparative Effectiveness for the Field of Radiology
SHAW, JOSEPH R.  MOUNT DESERT ISLAND BIOLOGICAL LAB Establishing a Network of Skilled BD2K Practitioners: The Summer Workshop on Population-Scale Genomic Studies of Environmental Stress
SHOJAIE, ALI (contact)
WITTEN, DANIELA
UNIVERSITY OF WASHINGTON Summer Institute for Statistics of Big Data
ZHANG, MIN PURDUE UNIVERSITY Big Data Training for Translational Omics Research
 
 
Mentored Career Development Award in Biomedical Big Data Science for Clinicians and Doctorally Prepared Scientists (K01) RFA-HG-14-007
PI Name Institution Name Title
AVANTS, BRIAN  UNIVERSITY OF PENNSYLVANIA Imaging genomics bases of pediatric executive functioning
CALLCUT, RACHAEL A  UNIVERSITY OF CALIFORNIA, SAN FRANCISCO Advancing Outcome Metrics in Trauma Surgery Through Utilization of Big Data
CHEN, JONATHAN HAILIN STANFORD UNIVERSITY Data-Mining Clinical Decision Support from Electronic Health Records
COFFMAN, DONNA LYN PENNSYLVANIA STATE UNIVERSITY-UNIV PARK Novel Methods to Identify Momentary Risk States for Stress & Physical Inactivity
FARHAT, MAHA MASSACHUSETTS GENERAL HOSPITAL New Tools for the interpretation of Pathogen Genomic Data with a focus on Mycobacterium
GARMIRE, LANA X UNIVERSITY OF HAWAII AT MANOA An Integrative Bioinformatics Approach to Study Single Cancer Cell Heterogeneity
GLISKE, STEPHEN V UNIVERSITY OF MICHIGAN Epileptic biomarkers and big data: identifying brain regions to resect in patients with refractory epilepsy
ITAKURA, HARUKA STANFORD UNIVERSITY Multi-scale data integration frameworks to improve cancer outcomes
JOHNSON, MICHAEL HIROSHI JOHNS HOPKINS UNIVERSITY Molecular Analysis and Precision Medicine in Renal Cell Carcinoma
LANDAU, DAN DANA-FARBER CANCER INST The role of epigenetic heterogeneity in CLL evolution 
NEMATI, SHAMIM EMORY UNIVERSITY Deep Learning and Streaming Analytics for Prediction of Adverse Events in the ICU
LEE, GEORGE CASE WESTERN RESERVE UNIVERSITY Big data convergence of pathology and omics for disease prognosis
NGUYEN, QUYNH UNIVERSITY OF UTAH HashtagHealth: A Social Media Big Data Resource for Neighborhood Effects Research
NSOESIE, ELAINE O. CHILDREN'S HOSPITAL CORPORATION A Framework for Integrating Multiple Data Sources for Modeling and Forecasting of Infectious Diseases
PAGUIRIGAN, AMY FRED HUTCHINSON CANCER RESEARCH CENTER Connecting Single Cell Heterogeneity to Clinical Descriptors of Clonal Evolution in Acute Myeloid Leukemia

PARK, SOOJIN

COLUMBIA UNIVERSITY HEALTH SCIENCES Multiparametric Prediction of Vasospasm after Subarachnoid Hemorrhage
PEARSON, JOHN  DUKE UNIVERSITY Nonparametric Bayes Methods for Big Data in Neuroscience
PROKOP, JEREMY HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY Using a Sequence-to-Structure-to-Function Approach to Functionally Characterize Protein Coding Missense Mutations in the Human and Rat Genomes
SCHMITT, JAMES E UNIVERSITY OF PENNSYLVANIA INGOT: a family of statistical computing algorithms for hypothesis-driven imaging genomic and longitudinal neuroimaging analysis
VAN PANHUIS, WILLEM GIJSBERT UNIVERSITY OF PITTSBURGH Data integration for global population health through dynamic models
WAGENAAR, JOOST B UNIVERSITY OF PENNSYLVANIA Developing Cloud-based tools for Big Neural Data
 
 
BD2K-LINCS-Perturbation Data Coordination and Integration Center (DCIC) (U54) RFA-HG-14-001
PI Name Institution Name Title
GOLUB, TODD R. (contact)
SUBRAMANIAN, ARAVIND
THE BROAD INSTITUTE, INC. LINCS Data Coordination and Integration Center
MA'AYAN, AVI (contact)
MEDVEDOVIC, MARIO
SCHURER, STEPHAN C
ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI Data Coordination and Integration Center for LINCS-BD2K
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