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The Human BioMolecular Atlas Program (HuBMAP) Integration, Visualization & Engagement (HIVE) Initiative (OT2 Clinical Trial Not Allowed) OTA-21-012 
PI Name Institution Name Title
RUFFALO, MATTHEW (contact)
PATEN, BENEDICT
TEICHMANN, SARAH
CARNEGIE-MELLON UNIVERSITY Computational tools for uniform processing and integration of human reference atlas data
BORNER, KATY INDIANA UNIVERSITY BLOOMINGTON 3D Multiscale Biomolecular Human Reference Atlas Construction, Visualization and Usage
GEHLENBORG, NILS HARVARD MEDICAL SCHOOL Data Exploration and Visualization Tools for HuBMAP and a Human Reference Atlas
BLOOD, PHILIP (contact)
SILVERSTEIN, JONATHAN C.
CARNEGIE-MELLON UNIVERSITY Flexible Hybrid Cloud Infrastructure for Seamless Management and Use of Human BioMoloecular Data and Reference Maps
SATIJA, RAHUL (contact)
MARIONI, JOHN CARLO
NEW YORK GENOME CENTER Comprehensive reference atlas construction, geolocation and data integration for HuBMAP HIVE
SARDER, PINAKI UNIVERSITY OF FLORIDA A Computational IMage Analysis Platform (CIMAP) for HuBMAP

 

The Human BioMolecular Atlas Program (HuBMAP) Demonstration Project (U01 Clinical Trial Not Allowed) RFA-RM-21-027
PI Name Institution Name Title
GUPTA, RAJAT M (contact)
SEGRE, AYELLET VERED
BRIGHAM AND WOMEN'S HOSPITAL Identifying the organotypic and disease-specific vascular cell populations by integrating single cell data with polygenic risk
LARONDA, MONICA M LURIE CHILDREN'S HOSPITAL OF CHICAGO Reverse Engineering the Extracellular Neighborhood to Support the Functional Tissue Unit: A Use Case to Restore Ovarian Function
NABA, ALEXANDRA (contact)
GAO, YU
UNIVERSITY OF ILLINOIS AT CHICAGO Thinking outside the cell: Leveraging HuBMAP data to build the human ECM atlas
PEI, LIMING (contact)
WALLACE, DOUGLAS C
XING, YI
CHILDREN'S HOSP OF PHILADELPHIA Novel biological insights by utilizing mitochondrial genome information from HuBMAP resources

 

Tissue Mapping Centers for the Human BioMolecular Atlas Program (U54 Clinical Trial Not Allowed) RFA-RM-21-026
PI Name Institution Name Title

BENDALL, SEAN CURTIS (contact)
ANGELO, ROBERT MICHAEL

STANFORD UNIVERSITY Multimodal histologic atlas of human bone marrow
GINTY, FIONA (contact)
KARUNAMURTHY, ARIVARASAN
GENERAL ELECTRIC GLOBAL RESEARCH CTR Multiscale, Multimodal Analysis of Skin and Spatial Cell Organization
JAIN, SANJAY (contact)
ZHANG, KUN
WASHINGTON UNIVERSITY Kidney single cell and spatial molecular atlas project - KIDSSMAP
LAURENT, LOUISE CHANG UNIVERSITY OF CALIFORNIA, SAN DIEGO Pregnant Female Reproductive Tissue Mapping Center
PRYHUBER, GLORIA S UNIVERSITY OF ROCHESTER The Human Lung BioMolecular Multi-Scale Atlas Program (HuBMAP-Lung)
SINGHAL, DHRUV (contact)
HONG, YOUNG-KWON
VLACHOS, IOANNIS
BETH ISRAEL DEACONESS MEDICAL CENTER Multi-scale Spatial Mapping of Human Lymphatic Vessels
SNYDER, MICHAEL P (contact)
NOLAN, GARRY P
STANFORD UNIVERSITY Stanford Tissue Mapping Center
SPRAGGINS, JEFFREY M (contact)
CAPRIOLI, RICHARD M
VANDERBILT UNIVERSITY Vanderbilt University Biomolecular Multimodal Imaging Center for 3-Dimensional Mapping of the Human Kidney
TAN, KAI (contact)
MOFFITT, JEFFREY
PEI, LIMING
CHILDREN'S HOSP OF PHILADELPHIA Center for multidimensional atlas of the human heart
WIRTZ, DENIS (contact)
REDDY, SASHANK
JOHNS HOPKINS UNIVERSITY 3D Multiscale Reference Atlas for Human Skin

 

Tissue Mapping Centers for the Human BioMolecular Atlas Program (U54 Clinical Trial Not Allowed) RFA-RM-20-002
PI Name Institution Name Title

QIAN, WEI-JUN (contact)
CARSON, JAMES PAUL
MATHEWS, CLAYTON E.

BATTELLE PACIFIC NORTHWEST LABORATORIES Multi-omic 3D tissue maps for a Human BioMolecular Atlas
KIM, JUNHYONG (contact)
O'NEILL, KATHLEEN ELISE
UNIVERSITY OF PENNSYLVANIA Penn Center for Multi-scale Molecular Mapping of the Female Reproductive System
LAURENT, LOUISE CHANG UNIVERSITY OF CALIFORNIA, SAN DIEGO Female Reproductive Tissue Mapping Center
ROWE, DAVID W. (contact)
MAYE, PETER
SHIN, DONG-GUK
UNIVERSITY OF CONNECTICUT SCH OF MED/DNT High resolution 3D mapping of cellular heterogeneity within multiple types of mineralized tissues
SPRAGGINS, JEFFREY M (contact)
CAPRIOLI, RICHARD M
POWERS, ALVIN C
SCHEY, KEVIN L
VANDERBILT UNIVERSITY Biomolecular Multimodal Imaging Center: 3-Dimensional Tissue Mapping of the Human Pancreas and Eye
TAN, KAI (contact)
BERNT, KATHRIN M
PEI, LIMING
CHILDREN'S HOSP OF PHILADELPHIA Center for Developmental Mapping of Heart and Bone Tissues

 

Transformative Technology Development for the Human BioMolecular Atlas Program (UG3/UH3 Clinical Trial Not Allowed) RFA-RM-20-001
PI Name Institution Name Title
FAN, RONG YALE UNIVERSITY High-spatial-resolution ECM-inclusive multi-omics sequencing of human PFA and FFPE tissue slides
PASA-TOLIC, LJILJANA BATTELLE PACIFIC NORTHWEST LABORATORIES Spatially resolved characterization of proteoforms for functional proteomics
SHI, TUJIN (contact) BATTELLE PACIFIC NORTHWEST LABORATORIES A streamlined platform for phosphoproteome mapping of human tissues
STOCKWELL, BRENT R (contact),
TIAN, HUA
COLUMBIA UNIV NEW YORK MORNINGSIDE Multimodal mass spectrometry imaging of mouse and human liver
ZHONG, SHENG UNIVERSITY OF CALIFORNIA, SAN DIEGO Spatial in situ mapping of RNA-chromatin interactions at transcriptome-and-genome scale in human tissues

 

The Human Biomolecular Atlas Program (HuBMAP): Rapid Implementation of Technologies that Will Accelerate Development of a Framework for Mapping the Human Body at High Resolution (UH3 Clinical Trial Not Allowed) RFA-RM-19-002
PI Name Institution Name Title
GINTY, FIONA GENERAL ELECTRIC GLOBAL RESEARCH CTR Multi-Scale 3-D Image Analytics for High Dimensional Spatial Mapping of Normal Tissues
ANGELO, ROBERT MICHAEL (contact)
BENDALL, SEAN CURTIS
STANFORD UNIVERSITY A robust platform for multiplexed, subcellular proteomic imaging in human tissue
KELLEHER, NEIL L NORTHWESTERN UNIVERSITY Renewable and Specific Affinity Reagents for Mapping Proteoforms in Human Tissues
MACOSKO, EVAN Z BROAD INSTITUTE, INC. Implementation of Slide-seq for high-resolution, whole-transcriptome human tissue maps.

 

Transformative Technology Development for The Human BioMolecular Atlas Program (UG3/UH3 Clinical Trial Not Allowed) RFA-RM-17-025 
PI Name Institution Name Title
CAI, LONG (contact)
YUAN, GUO-CHENG
CALIFORNIA INSTITUTE OF TECHNOLOGY In situ transcriptome profiling in single cells
HARBURY, PEHR A (contact)
DESAI, TUSHAR JASUBHAI
STANFORD UNIVERSITY Next-Generation Genomic Imaging Technology
LASKIN, JULIA PURDUE UNIVERSITY Novel Platform for Quantitative Subcellular Resolution Imaging of Human Tissues Using Mass Spectrometry
YIN, PENG HARVARD UNIVERSITY High-Throughput, Highly Multiplexed In Situ Proteomic Imaging of Human Tissues

 

Tissue Mapping Centers for The Human BioMolecular Atlas Program (U54) RFA-RM-17-027 
PI Name Institution Name Title
ATKINSON, MARK A. (contact)
BODENMILLER, BERND
NICK, HARRY S
UNIVERSITY OF FLORIDA A 3D Tissue Map of the Human Lymphatic System
CAI, LONG (contact)
SHENDURE, JAY ASHOK
TRAPNELL, BRUCE COLSTON
CALIFORNIA INSTITUTE OF TECHNOLOGY A Spatially Resolved Molecular Atlas of Human Endothelium
CAPRIOLI, RICHARD M (contact)
SPRAGGINS, JEFFREY M
VANDERBILT UNIVERSITY Vanderbilt University Biomolecular Multimodal Imaging Center for 3-Dimensional Tissue Mapping
SNYDER, MICHAEL P. (contact)
NOLAN, GARRY P
STANFORD UNIVERSITY Stanford Tissue Mapping Center
ZHANG, KUN (contact)
HAGOOD, JAMES S.
JAIN, SANJAY
KHARCHENKO, PETER V
SUN, XIN
UNIVERSITY OF CALIFORNIA, SAN DIEGO KULMAP: Human Kidney, urinary tract and lung mapping center

 

The Human BioMolecular Atlas Program (HuBMAP) Integration, Visualization & Engagement (HIVE) Initiative (OT2 Clinical Trial Not Allowed) RFA-RM-18-001 
PI Name Institution Name Title
BAR-JOSEPH, ZIV (contact)
PATEN, BENEDICT
TEICHMANN, SARAH
CARNEGIE-MELLON UNIVERSITY COMPREHENSIVE, FLEXIBLE AND FAIR TOOLS FOR THE HUBMAP HIVE
BORNER, KATY INDIANA UNIVERSITY BLOOMINGTON The Human Body Atlas: High-Resolution, Functional Mapping of Voxel, Vector, and Meta Datasets
GEHLENBORG, NILS HARVARD MEDICAL SCHOOL HuBMAP HIVE Tools Component
BLOOD, PHILIP (contact)
SILVERSTEIN, JONATHAN C.
CARNEGIE-MELLON UNIVERSITY Flexible Hybrid Cloud Infrastructure for Seamless Management of HuBMAP Resources
SATIJA, RAHUL (contact)
MARIONI, JOHN CARLO
NEW YORK GENOME CENTER Comprehensive reference map construction, geolocation and data integration for HuBMAP HIVE

This page last reviewed on December 1, 2023