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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Authors Journal PubMedID Publication Date
Rapid and precise genome engineering in a naturally short-lived vertebrate. Bedbrook, Claire N; Nath, Ravi D; Nagvekar, Rahul; Deisseroth, Karl; Brunet, Anne eLife 37191291 2023 May 09
Accelerated transcriptional elongation during aging impairs longevity. Tyshkovskiy, Alexander; Zhang, Sirui; Gladyshev, Vadim N Cell research 37253838 2023 May 30
Extraction and Purification of Single Nuclei from Frozen Human Brain Tissue. Palmer, Carter R; Chun, Jerold Methods in molecular biology (Clifton, N.J.) 36399263 2023
Hepatic stellate cells maintain liver homeostasis through paracrine neurotrophin-3 signaling that induces hepatocyte proliferation. Trinh, Vincent Quoc-Huy; Lee, Ting-Fang; Lemoinne, Sara; Ray, Kevin C; Ybanez, Maria D; Tsuchida, Takuma; Carter, James K; Agudo, Judith; Brown, Brian D; Akat, Kemal M; Friedman, Scott L; Lee, Youngmin A Science signaling 37253090 2023 May 30
Engineered Escherichia coli for the in situ secretion of therapeutic nanobodies in the gut. Lynch, Jason P; González-Prieto, Coral; Reeves, Analise Z; Bae, Sena; Powale, Urmila; Godbole, Neha P; Tremblay, Jacqueline M; Schmidt, Florian I; Ploegh, Hidde L; Kansra, Vikram; Glickman, Jonathan N; Leong, John M; Shoemaker, Charles B; Garrett, Wendy S; Lesser, Cammie F Cell host & microbe 37003258 2023 Apr 12
Rapid thalamocortical network switching mediated by cortical synchronization underlies propofol-induced EEG signatures: a biophysical model. Soplata, Austin E; Adam, Elie; Brown, Emery N; Purdon, Patrick L; McCarthy, Michelle M; Kopell, Nancy Journal of neurophysiology 37314079 2023 Jul 01
A modified Michaelis-Menten equation estimates growth from birth to 3 years in healthy babies in the US. Walters, William; Ley, Catherine; Hastie, Trevor; Ley, Ruth; Parsonnet, Julie Research square 36711501 2023 Jun 22
High central venous pressure amplitude predicts successful defibrillation in a porcine model of cardiac arrest. Balzer, Claudius; Eagle, Susan S; Yannopoulos, Demetris; Aufderheide, Tom P; Riess, Matthias L Resuscitation 36736947 2023 Apr
Mechanisms That Underlie Expression of Estradiol-Induced Excitatory Synaptic Potentiation in the Hippocampus Differ between Males and Females. Jain, Anant; Woolley, Catherine S The Journal of neuroscience : the official journal of the Society for Neuroscience 36650060 2023 Feb 22
oFlowSeq: a quantitative approach to identify protein coding mutations affecting cell type enrichment using mosaic CRISPR-Cas9 edited cerebral organoids. Dawes, Pepper; Murray, Liam F; Olson, Meagan N; Barton, Nathaniel J; Smullen, Molly; Suresh, Madhusoodhanan; Yan, Guang; Zhang, Yucheng; Fernandez-Fontaine, Aria; English, Jay; Uddin, Mohammed; Pak, ChangHui; Church, George M; Chan, Yingleong; Lim, Elaine T Human genetics 36877372 2023 Mar 06
Nondestructive 3D Pathology with Light-Sheet Fluorescence Microscopy for Translational Research and Clinical Assays. Liu, Jonathan T C; Glaser, Adam K; Poudel, Chetan; Vaughan, Joshua C Annual review of analytical chemistry (Palo Alto, Calif.) 36854208 2023 Jun 14
Single-nucleus multiregion transcriptomic analysis of brain vasculature in Alzheimer's disease. Sun, Na; Akay, Leyla Anne; Murdock, Mitchell H; Park, Yongjin; Galiana-Melendez, Fabiola; Bubnys, Adele; Galani, Kyriaki; Mathys, Hansruedi; Jiang, Xueqiao; Ng, Ayesha P; Bennett, David A; Tsai, Li-Huei; Kellis, Manolis Nature neuroscience 37264161 2023 Jun
Four anti-aging drugs and calorie-restricted diet produce parallel effects in fat, brain, muscle, macrophages, and plasma of young mice. Li, Xinna; McPherson, Madaline; Hager, Mary; Lee, Michael; Chang, Peter; Miller, Richard A GeroScience 36920743 2023 Mar 15
Conserved transcription factors promote cell fate stability and restrict reprogramming potential in differentiated cells. Missinato, Maria A; Murphy, Sean; Lynott, Michaela; Yu, Michael S; Kervadec, Anaïs; Chang, Yu-Ling; Kannan, Suraj; Loreti, Mafalda; Lee, Christopher; Amatya, Prashila; Tanaka, Hiroshi; Huang, Chun-Teng; Puri, Pier Lorenzo; Kwon, Chulan; Adams, Peter D; Qian, Li; Sacco, Alessandra; Andersen, Peter; Colas, Alexandre R Nature communications 36973293 2023 Mar 27
Babesia duncani multi-omics identifies virulence factors and drug targets. Singh, Pallavi; Lonardi, Stefano; Liang, Qihua; Vydyam, Pratap; Khabirova, Eleonora; Fang, Tiffany; Gihaz, Shalev; Thekkiniath, Jose; Munshi, Muhammad; Abel, Steven; Ciampossin, Loic; Batugedara, Gayani; Gupta, Mohit; Lu, Xueqing Maggie; Lenz, Todd; Chakravarty, Sakshar; Cornillot, Emmanuel; Hu, Yangyang; Ma, Wenxiu; Gonzalez, Luis Miguel; Sánchez, Sergio; Estrada, Karel; Sánchez-Flores, Alejandro; Montero, Estrella; Harb, Omar S; Le Roch, Karine G; Mamoun, Choukri Ben Nature microbiology 37055610 2023 May
Stabilizing the return to normal behavior in an epidemic. Berry, Tyrus; Ferrari, Matthew; Sauer, Timothy; Greybush, Steven J; Ebeigbe, Donald; Whalen, Andrew J; Schiff, Steven J medRxiv : the preprint server for health sciences 36993470 2023 May 22
Targeting lipid-protein interaction to treat Syk-mediated acute myeloid leukemia. Singaram, Indira; Sharma, Ashutosh; Pant, Shashank; Lihan, Muyun; Park, Mi-Jeong; Pergande, Melissa; Buwaneka, Pawanthi; Hu, Yusi; Mahmud, Nadim; Kim, You-Me; Cologna, Stephanie; Gevorgyan, Vladimir; Khan, Irum; Tajkhorshid, Emad; Cho, Wonhwa Nature chemical biology 36229686 2023 Feb
Cryo-EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms. Le, Le Thi My; Thompson, James Robert; Dehghani-Ghahnaviyeh, Sepehr; Pant, Shashank; Dang, Phuoc Xuan; French, Jarrod Bradley; Kanikeyo, Takahisa; Tajkhorshid, Emad; Alam, Amer The EMBO journal 36484366 2023 Feb 01
Receptor Elimination by E3 Ubiquitin Ligase Recruitment (REULR): A Targeted Protein Degradation Toolbox. Siepe, Dirk H; Picton, Lora K; Garcia, K Christopher ACS synthetic biology 37011906 2023 Apr 21
Deep ensemble learning enables highly accurate classification of stored red blood cell morphology. Routt, Austin H; Yang, Natalia; Piety, Nathaniel Z; Lu, Madeleine; Shevkoplyas, Sergey S Scientific reports 36823298 2023 Feb 23
Proximal tubule responses to injury: interrogation by single-cell transcriptomics. Cippà, Pietro E; McMahon, Andrew P Current opinion in nephrology and hypertension 37074682 2023 Jul 01
Weapons of stress reduction: (R,S)-ketamine and its metabolites as prophylactics for the prevention of stress-induced psychiatric disorders. Chen, Briana K; Denny, Christine A Neuropharmacology 36427554 2023 Feb 15
Epigenetic dosage identifies two major and functionally distinct β cell subtypes. Dror, Erez; Fagnocchi, Luca; Wegert, Vanessa; Apostle, Stefanos; Grimaldi, Brooke; Gruber, Tim; Panzeri, Ilaria; Heyne, Steffen; Höffler, Kira Daniela; Kreiner, Victor; Ching, Reagan; Tsai-Hsiu Lu, Tess; Semwal, Ayush; Johnson, Ben; Senapati, Parijat; Lempradl, Adelheid; Schones, Dustin; Imhof, Axel; Shen, Hui; Pospisilik, John Andrew Cell metabolism 36948185 2023 May 02
Disulfide bond in SUN2 regulates dynamic remodeling of LINC complexes at the nuclear envelope. Sharma, Rahul; Hetzer, Martin W Life science alliance 37188462 2023 Aug
Hematopoietic Somatic Mosaicism Is Associated With an Increased Risk of Postoperative Atrial Fibrillation. Ninni, Sandro; Dombrowicz, David; Kuznetsova, Tanya; Vicario, Rocio; Gao, Vance; Molendi-Coste, Olivier; Haas, Joel; Woitrain, Eloise; Coisne, Augustin; Neele, Annette E; Prange, Koen; Willemsen, Lisa; Aghezzaf, Samy; Fragkogianni, Stamatina; Tazibet, Amine; Pineau, Laurent; White, James Robert; Eeckhoute, Jérôme; Koussa, Mohamed; Dubrulle, Henri; Juthier, Francis; Soquet, Jérôme; Vincentelli, André; Edme, Jean-Louis; de Winther, Menno; Geissmann, Frederic; Staels, Bart; Montaigne, David Journal of the American College of Cardiology 36990546 2023 Apr 04
Specialized Pro-Resolving Mediators as Resolution Pharmacology for the Control of Pain and Itch. Ji, Ru-Rong Annual review of pharmacology and toxicology 36100219 2023 Jan 20
How it feels in a cell. Bonucci, Martina; Shu, Tong; Holt, Liam J Trends in cell biology 37286396 2023 Jun 05
Occupational history associates with ALS survival and onset segment. Goutman, Stephen A; Boss, Jonathan; Godwin, Christopher; Mukherjee, Bhramar; Feldman, Eva L; Batterman, Stuart A Amyotrophic lateral sclerosis & frontotemporal degeneration 36193557 2023 May
Autophagy at the synapse, an early site of dysfunction in neurodegeneration. Jasutkar, Hilary Grosso; Yamamoto, Ai Current opinion in physiology 36968133 2023 Apr
miRNA analysis reveals novel dysregulated pathways in amyotrophic lateral sclerosis. Hur, Junguk; Paez-Colasante, Ximena; Figueroa-Romero, Claudia; Lo, Ting-Wen; Barmada, Sami J; Paulsen, Michelle T; Ljungman, Mats; Alakwaa, Fadhl M; Savelieff, Masha G; Goutman, Stephen A; Feldman, Eva L Human molecular genetics 36219176 2023 Mar 06
A rapid microglial metabolic response controls metabolism and improves memory. Drougard, Anne; Ma, Eric H; Wegert, Vanessa; Sheldon, Ryan; Panzeri, Ilaria; Vatsa, Naman; Apostle, Stefanos; Fagnocchi, Luca; Schaf, Judith; Gossens, Klaus; Völker, Josephine; Pang, Shengru; Bremser, Anna; Dror, Erez; Giacona, Francesca; Sagar; Henderson, Michael X; Prinz, Marco; Jones, Russell G; Pospisilik, J Andrew bioRxiv : the preprint server for biology 37066282 2023 Apr 04
High-Temporal-Resolution Lung Kinetic Modeling Using Total-Body Dynamic PET with Time-Delay and Dispersion Corrections. Wang, Yiran; Spencer, Benjamin A; Schmall, Jeffrey; Li, Elizabeth; Badawi, Ramsey D; Jones, Terry; Cherry, Simon R; Wang, Guobao Journal of nuclear medicine : official publication, Society of Nuclear Medicine 37116916 2023 Jul
Innate immune pathway modulator screen identifies STING pathway activation as a strategy to inhibit multiple families of arbo and respiratory viruses. Garcia Jr, Gustavo; Irudayam, Joseph Ignatius; Jeyachandran, Arjit Vijey; Dubey, Swati; Chang, Christina; Castillo Cario, Sebastian; Price, Nate; Arumugam, Sathya; Marquez, Angelica L; Shah, Aayushi; Fanaei, Amir; Chakravarty, Nikhil; Joshi, Shantanu; Sinha, Sanjeev; French, Samuel W; Parcells, Mark S; Ramaiah, Arunachalam; Arumugaswami, Vaithilingaraja Cell reports. Medicine 37119814 2023 May 16
Exercise reprograms the inflammatory landscape of multiple stem cell compartments during mammalian aging. Liu, Ling; Kim, Soochi; Buckley, Matthew T; Reyes, Jaime M; Kang, Jengmin; Tian, Lei; Wang, Mingqiang; Lieu, Alexander; Mao, Michelle; Rodriguez-Mateo, Cristina; Ishak, Heather D; Jeong, Mira; Wu, Joseph C; Goodell, Margaret A; Brunet, Anne; Rando, Thomas A Cell stem cell 37080206 2023 May 04
Germline-encoded amino acid-binding motifs drive immunodominant public antibody responses. Shrock, Ellen L; Timms, Richard T; Kula, Tomasz; Mena, Elijah L; West Jr, Anthony P; Guo, Rui; Lee, I-Hsiu; Cohen, Alexander A; McKay, Lindsay G A; Bi, Caihong; Leng, Yumei; Fujimura, Eric; Horns, Felix; Li, Mamie; Wesemann, Duane R; Griffiths, Anthony; Gewurz, Benjamin E; Bjorkman, Pamela J; Elledge, Stephen J Science (New York, N.Y.) 37023193 2023 Apr 07
Identification of White Matter Hyperintensities in Routine Emergency Department Visits Using Portable Bedside Magnetic Resonance Imaging. de Havenon, Adam; Parasuram, Nethra R; Crawford, Anna L; Mazurek, Mercy H; Chavva, Isha R; Yadlapalli, Vineetha; Iglesias, Juan E; Rosen, Matthew S; Falcone, Guido J; Payabvash, Seyedmehdi; Sze, Gordon; Sharma, Richa; Schiff, Steven J; Safdar, Basmah; Wira, Charles; Kimberly, William T; Sheth, Kevin N Journal of the American Heart Association 37218590 2023 Jun 06
Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim, Tae-Wuk; Park, Chan Ho; Hsu, Chuan-Chih; Kim, Yeong-Woo; Ko, Yeong-Woo; Zhang, Zhenzhen; Zhu, Jia-Ying; Hsiao, Yu-Chun; Branon, Tess; Kaasik, Krista; Saldivar, Evan; Li, Kevin; Pasha, Asher; Provart, Nicholas J; Burlingame, Alma L; Xu, Shou-Ling; Ting, Alice Y; Wang, Zhi-Yong The Plant cell 36660928 2023 Mar 15
Spatially resolved epigenomic profiling of single cells in complex tissues. Lu, Tian; Ang, Cheen Euong; Zhuang, Xiaowei Cell 37172568 2023 May 11
Error-Correction Method for High-Throughput Sizing of Nanoscale Vesicles with Single-Molecule Localization Microscopy. Jung, Seung-Ryoung; Kim, James; Vojtech, Lucia; Vaughan, Joshua C; Chiu, Daniel T The journal of physical chemistry. B 36944080 2023 Mar 30
The computational capabilities of many-to-many protein interaction networks. Klumpe, Heidi E; Garcia-Ojalvo, Jordi; Elowitz, Michael B; Antebi, Yaron E Cell systems 37348461 2023 Jun 21
Phase Separation in Biology and Disease; Current Perspectives and Open Questions. Boeynaems, Steven; Chong, Shasha; Gsponer, Jörg; Holt, Liam; Milovanovic, Dragomir; Mitrea, Diana M; Mueller-Cajar, Oliver; Portz, Bede; Reilly, John F; Reinkemeier, Christopher D; Sabari, Benjamin R; Sanulli, Serena; Shorter, James; Sontag, Emily; Strader, Lucia; Stachowiak, Jeanne; Weber, Stephanie C; White, Michael; Zhang, Huaiying; Zweckstetter, Markus; Elbaum-Garfinkle, Shana; Kriwacki, Richard Journal of molecular biology 36690068 2023 Mar 01
Acceptability and Feasibility of eSCCIP: Results From a Pilot Study of the Electronic Surviving Cancer Competently Intervention Program. Canter, Kimberly S; Vega, Gabriela; Perez Ramirez, Alejandra; Munoz Osorio, Angel; Thomas, Courtney; Lewis, Amanda M; Arasteh, Kamyar; Kazak, Anne Journal of pediatric psychology 36303445 2023 Mar 20
Differential dynamics and direct interaction of bound ligands with lipids in multidrug transporter ABCG2. Rasouli, Ali; Yu, Qin; Dehghani-Ghahnaviyeh, Sepehr; Wen, Po-Chao; Kowal, Julia; Locher, Kaspar P; Tajkhorshid, Emad Proceedings of the National Academy of Sciences of the United States of America 36580587 2023 Jan 03
Contextual modifiers of healthspan, lifespan, and epigenome in mice under chronic social stress. Razzoli, Maria; Nyuyki-Dufe, Kewir; Chen, Brian H; Bartolomucci, Alessandro Proceedings of the National Academy of Sciences of the United States of America 37043532 2023 Apr 18
Metabolism, homeostasis, and aging. Moldakozhayev, Alibek; Gladyshev, Vadim N Trends in endocrinology and metabolism: TEM 36681595 2023 Mar
An Atlas of Variant Effects to understand the genome at nucleotide resolution. Fowler, Douglas M; Adams, David J; Gloyn, Anna L; Hahn, William C; Marks, Debora S; Muffley, Lara A; Neal, James T; Roth, Frederick P; Rubin, Alan F; Starita, Lea M; Hurles, Matthew E Genome biology 37394429 2023 Jul 03
Fast light-field 3D microscopy with out-of-distribution detection and adaptation through Conditional Normalizing Flows. Vizcaíno, Josué Page; Symvoulidis, Panagiotis; Wang, Zeguan; Jelten, Jonas; Favaro, Paolo; Boyden, Edward S; Lasser, Tobias ArXiv 37396615 2023 Jun 14
Route-dependent spatial engram tagging in mouse dentate gyrus. Wilmerding, Lucius K; Kondratyev, Ivan; Ramirez, Steve; Hasselmo, Michael E Neurobiology of learning and memory 36822466 2023 Apr
Single-cell transcriptomics of a dynamic cell behavior in murine airways. Kwok, Sheldon J J; Montoro, Daniel T; Haber, Adam L; Yun, Seok-Hyun; Vinarsky, Vladimir eLife 37083555 2023 Apr 21
PNMA2 forms non-enveloped virus-like capsids that trigger paraneoplastic neurological syndrome. Xu, Junjie; Erlendsson, Simon; Singh, Manvendra; Regier, Matthew; Ibiricu, Iosune; Day, Gregory S; Piquet, Amanda L; Clardy, Stacey L; Feschotte, Cedric; Briggs, John A G; Shepherd, Jason D bioRxiv : the preprint server for biology 36798413 2023 Feb 09
SYF2 suppression mitigates neurodegeneration in models of diverse forms of ALS. Linares, Gabriel R; Li, Yichen; Chang, Wen-Hsuan; Rubin-Sigler, Jasper; Mendonca, Stacee; Hong, Sarah; Eoh, Yunsun; Guo, Wenxuan; Huang, Yi-Hsuan; Chang, Jonathan; Tu, Sharon; Dorjsuren, Nomongo; Santana, Manuel; Hung, Shu-Ting; Yu, Johnny; Perez, Joscany; Chickering, Michael; Cheng, Tze-Yuan; Huang, Chi-Chou; Lee, Shih-Jong James; Deng, Hao-Jen; Bach, Kieu-Tram; Gray, Kamden; Subramanyam, Vishvak; Rosenfeld, Jeffrey; Alworth, Samuel V; Goodarzi, Hani; Ichida, Justin K Cell stem cell 36736291 2023 Feb 02
Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale. Mendelevich, Asia; Gupta, Saumya; Pakharev, Aleksei; Teodosiadis, Athanasios; Mironov, Andrey A; Gimelbrant, Alexander A Bioinformatics (Oxford, England) 37387154 2023 Jun 30
Tuning phenylalanine fluorination to assess aromatic contributions to protein function and stability in cells. Galles, Grace D; Infield, Daniel T; Clark, Colin J; Hemshorn, Marcus L; Manikandan, Shivani; Fazan, Frederico; Rasouli, Ali; Tajkhorshid, Emad; Galpin, Jason D; Cooley, Richard B; Mehl, Ryan A; Ahern, Christopher A Nature communications 36599844 2023 Jan 04
Under the magnifying glass: The ups and downs of rDNA copy number. Kindelay, Selina M; Maggert, Keith A Seminars in cell & developmental biology 35595601 2023 Feb 28
Increased mesoscale diffusivity in response to acute glucose starvation. Xie, Ying; Gresham, David; Holt, Liam J microPublication biology 36908311 2023
Body mass index associates with amyotrophic lateral sclerosis survival and metabolomic profiles. Goutman, Stephen A; Boss, Jonathan; Iyer, Gayatri; Habra, Hani; Savelieff, Masha G; Karnovsky, Alla; Mukherjee, Bhramar; Feldman, Eva L Muscle & nerve 36321729 2023 Mar
Label-free intraoperative histology of bone tissue via deep-learning-assisted ultraviolet photoacoustic microscopy. Cao, Rui; Nelson, Scott D; Davis, Samuel; Liang, Yu; Luo, Yilin; Zhang, Yide; Crawford, Brooke; Wang, Lihong V Nature biomedical engineering 36123403 2023 Feb
Single-shot photoacoustic imaging with single-element transducer through a spatiotemporal encoder. Zhao, Yanyu; Wang, Lihong V Journal of biomedical optics 37065647 2023 Apr
Exploring Vessel Wall Biology In Vivo by Ultrasensitive Total-Body PET. Derlin, Thorsten; Spencer, Benjamin A; Mamach, Martin; Abdelhafez, Yasser; Nardo, Lorenzo; Badawi, Ramsey D; Cherry, Simon R; Bengel, Frank M Journal of nuclear medicine : official publication, Society of Nuclear Medicine 36175139 2023 Mar
Total-Body Multiparametric PET Quantification of 18 F-FDG Delivery and Metabolism in the Study of COVID-19 Recovery. Wang, Yiran; Nardo, Lorenzo; Spencer, Benjamin A; Abdelhafez, Yasser G; Li, Elizabeth J; Omidvari, Negar; Chaudhari, Abhijit J; Badawi, Ramsey D; Jones, Terry; Cherry, Simon R; Wang, Guobao medRxiv : the preprint server for health sciences 37034643 2023 Mar 30
Longitudinal Evaluation of Antibody Persistence in Mother-Infant Dyads After Severe Acute Respiratory Syndrome Coronavirus 2 Infection in Pregnancy. Cambou, Mary C; Liu, Christine M; Mok, Thalia; Fajardo-Martinez, Viviana; Paiola, Sophia G; Ibarrondo, Francisco J; Kerin, Tara; Fuller, Trevon; Tobin, Nicole H; Garcia, Gustavo; Bhattacharya, Debika; Aldrovandi, Grace M; Arumugaswami, Vaithilingaraja; Foo, Suan-Sin; Jung, Jae U; Vasconcelos, Zilton; Brasil, Patricia; Brendolin, Michelle; Yang, Otto O; Rao, Rashmi; Nielsen-Saines, Karin The Journal of infectious diseases 36082433 2023 Jan 11
Broad-spectrum antiviral inhibitors targeting pandemic potential RNA viruses. Garcia Jr, Gustavo; Irudayam, Joseph Ignatius; Jeyachandran, Arjit Vijay; Dubey, Swati; Chang, Christina; Cario, Sebastian Castillo; Price, Nate; Arumugam, Sathya; Marquez, Angelica L; Shah, Aayushi; Fanaei, Amir; Chakravarty, Nikhil; Joshi, Shantanu; Sinha, Sanjeev; French, Samuel W; Parcells, Mark; Ramaiah, Arunachalam; Arumugaswami, Vaithilingaraja bioRxiv : the preprint server for biology 36711787 2023 Jan 20
Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale. Mendelevich, Asia; Gupta, Saumya; Pakharev, Aleksei; Teodosiadis, Athanasios; Mironov, Andrey A; Gimelbrant, Alexander A bioRxiv : the preprint server for biology 36798258 2023 Feb 12
Selective Serotonin Reuptake Inhibitors within Cells: Temporal Resolution in Cytoplasm, Endoplasmic Reticulum, and Membrane. Nichols, Aaron L; Blumenfeld, Zack; Luebbert, Laura; Knox, Hailey J; Muthusamy, Anand K; Marvin, Jonathan S; Kim, Charlene H; Grant, Stephen N; Walton, David P; Cohen, Bruce N; Hammar, Rebekkah; Looger, Loren; Artursson, Per; Dougherty, Dennis A; Lester, Henry A The Journal of neuroscience : the official journal of the Society for Neuroscience 36868853 2023 Mar 29
Lineage motifs: developmental modules for control of cell type proportions. Tran, Martin; Askary, Amjad; Elowitz, Michael B bioRxiv : the preprint server for biology 37333085 2023 Jun 07
Venous waveform analysis detects acute right ventricular failure in a rat respiratory arrest model. Lefevre, Ryan J; Barajas, Matthew B; Balzer, Claudius; Baudenbacher, Franz J; Riess, Matthias L; Staudt, Genevieve; Hernandez, Antonio; Eagle, Susan S Pediatric research 36042330 2023 May
Condensation of LINE-1 is critical for retrotransposition. Sil, Srinjoy; Keegan, Sarah; Ettefa, Farida; Denes, Lance T; Boeke, Jef D; Holt, Liam J eLife 37114770 2023 Apr 28
The environmental stress response regulates ribosome content in cell cycle-arrested S. cerevisiae. Terhorst, Allegra; Sandikci, Arzu; Whittaker, Charles A; Szórádi, Tamás; Holt, Liam J; Neurohr, Gabriel E; Amon, Angelika Frontiers in cell and developmental biology 37123399 2023
Epithelial tissue confinement inhibits cell growth and leads to volume-reducing divisions. Devany, John; Falk, Martin J; Holt, Liam J; Murugan, Arvind; Gardel, Margaret L Developmental cell 37339629 2023 Jun 14
Disrupting pathologic phase transitions in neurodegeneration. Hurtle, Bryan T; Xie, Longxin; Donnelly, Christopher J The Journal of clinical investigation 37395272 2023 Jul 03
PIKFYVE inhibition mitigates disease in models of diverse forms of ALS. Hung, Shu-Ting; Linares, Gabriel R; Chang, Wen-Hsuan; Eoh, Yunsun; Krishnan, Gopinath; Mendonca, Stacee; Hong, Sarah; Shi, Yingxiao; Santana, Manuel; Kueth, Chuol; Macklin-Isquierdo, Samantha; Perry, Sarah; Duhaime, Sarah; Maios, Claudia; Chang, Jonathan; Perez, Joscany; Couto, Alexander; Lai, Jesse; Li, Yichen; Alworth, Samuel V; Hendricks, Eric; Wang, Yaoming; Zlokovic, Berislav V; Dickman, Dion K; Parker, J Alex; Zarnescu, Daniela C; Gao, Fen-Biao; Ichida, Justin K Cell 36754049 2023 Feb 16
Ancestral protein reconstruction reveals evolutionary events governing variation in Dicer helicase function. Aderounmu, Adedeji M; Aruscavage, P Joseph; Kolaczkowski, Bryan; Bass, Brenda L eLife 37068011 2023 Apr 17
Discovery of VH domains that allosterically inhibit ENPP1. Solomon, Paige E; Bracken, Colton J; Carozza, Jacqueline A; Wang, Haoqing; Young, Elizabeth P; Wellner, Alon; Liu, Chang C; Sweet-Cordero, E Alejandro; Li, Lingyin; Wells, James A Nature chemical biology 37400538 2023 Jul 03
Recording of cellular physiological histories along optically readable self-assembling protein chains. Linghu, Changyang; An, Bobae; Shpokayte, Monika; Celiker, Orhan T; Shmoel, Nava; Zhang, Ruihan; Zhang, Chi; Park, Demian; Park, Won Min; Ramirez, Steve; Boyden, Edward S Nature biotechnology 36593405 2023 May
SPIDR: a highly multiplexed method for mapping RNA-protein interactions uncovers a potential mechanism for selective translational suppression upon cellular stress. Wolin, Erica; Guo, Jimmy K; Blanco, Mario R; Perez, Andrew A; Goronzy, Isabel N; Abdou, Ahmed A; Gorhe, Darvesh; Guttman, Mitchell; Jovanovic, Marko bioRxiv : the preprint server for biology 37333139 2023 Jun 07
Helicobacter pylori Chronic Infection Selects for Effective Colonizers of Metaplastic Glands. O'Brien, V P; Jackson, L K; Frick, J P; Rodriguez Martinez, A E; Jones, D S; Johnston, C D; Salama, N R mBio 36598261 2023 Feb 28
Partial convergence of the human vaginal and rectal maternal microbiota in late gestation and early post-partum. Shin, Hakdong; Martinez 2nd, Keith A; Henderson, Nora; Jay, Melanie; Schweizer, William; Bogaert, Debby; Park, Gwoncheol; Bokulich, Nicholas A; Blaser, Martin J; Dominguez-Bello, Maria Gloria NPJ biofilms and microbiomes 37311781 2023 Jun 13
Negative Data, Oh No What Should I Do? How Publication of Negative Data Removes Roadblocks to Productive Research from the Perspective of Scientists Who Perform the Experiments. Beltrame, Angela K; Caldon, Johnathon J; Gurski, Cody J; Hajiyeva, Zivar; Meinhardt, Nathan J; Sommers, Kelli C; Neu, Savannah D; Dittel, Bonnie N ImmunoHorizons 37252801 2023 May 01
CeLab, a microfluidic platform for the study of life history traits, reveals metformin and SGK-1 regulation of longevity and reproductive span. Sohrabi, Salman; Cota, Vanessa; Murphy, Coleen T Lab on a chip 37221962 2023 Jun 13
The effect of a pharmaceutical ghrelin agonist on lifespan in C57BL/6J male mice: A controlled experiment. Kaiser, Kathryn A; Kadish, Inga; van Groen, Thomas; Smith Jr, Daniel L; Dickinson, Stephanie; Henschel, Beate; Parker, Erik S; Brown, Andrew W; Allison, David B Aging cell 36734122 2023 Apr
Central memory T cells are the most effective precursors of resident memory T cells in human skin. Matos, Tiago R; Gehad, Ahmed; Teague, Jessica E; Dyring-Andersen, Beatrice; Benezeder, Theresa; Dowlatshahi, Mitra; Crouch, Jack; Watanabe, Yoshinori; O'Malley, John T; Kupper, Thomas S; Yang, Chao; Watanabe, Rei; Clark, Rachael A Science immunology 35452256 2022 Apr 22
Omicron's message on vaccines: Boosting begets breadth. Wesemann, Duane R Cell 35065712 2022 Feb 03
Differential richness inference for 16S rRNA marker gene surveys. Kumar, M Senthil; Slud, Eric V; Hehnly, Christine; Zhang, Lijun; Broach, James; Irizarry, Rafael A; Schiff, Steven J; Paulson, Joseph N Genome biology 35915508 2022 Aug 01
Myeloperoxidase as a Marker to Differentiate Mouse Monocyte/Macrophage Subsets. Gurski, Cody J; Dittel, Bonnie N International journal of molecular sciences 35897821 2022 Jul 26
An automated feeding system for the African killifish reveals the impact of diet on lifespan and allows scalable assessment of associative learning. McKay, Andrew; Costa, Emma K; Chen, Jingxun; Hu, Chi-Kuo; Chen, Xiaoshan; Bedbrook, Claire N; Khondker, Rishad C; Thielvoldt, Mike; Priya Singh, Param; Wyss-Coray, Tony; Brunet, Anne eLife 36354233 2022 Nov 10
Rapid directed molecular evolution of fluorescent proteins in mammalian cells. Babakhanova, Siranush; Jung, Erica E; Namikawa, Kazuhiko; Zhang, Hanbin; Wang, Yangdong; Subach, Oksana M; Korzhenevskiy, Dmitry A; Rakitina, Tatiana V; Xiao, Xian; Wang, Wenjing; Shi, Jing; Drobizhev, Mikhail; Park, Demian; Eisenhard, Lea; Tang, Hongyun; Köster, Reinhard W; Subach, Fedor V; Boyden, Edward S; Piatkevich, Kiryl D Protein science : a publication of the Protein Society 34913537 2022 Mar
Xist spatially amplifies SHARP/SPEN recruitment to balance chromosome-wide silencing and specificity to the X chromosome. Jachowicz, Joanna W; Strehle, Mackenzie; Banerjee, Abhik K; Blanco, Mario R; Thai, Jasmine; Guttman, Mitchell Nature structural & molecular biology 35301492 2022 Mar
High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex. Chen, Yushu; Chen, Xiaoyin; Baserdem, Batuhan; Zhan, Huiqing; Li, Yan; Davis, Martin B; Kebschull, Justus M; Zador, Anthony M; Koulakov, Alexei A; Albeanu, Dinu F Cell 36306734 2022 Oct 27
Emerging strategies for engineering Escherichia coli Nissle 1917-based therapeutics. Lynch, Jason P; Goers, Lisa; Lesser, Cammie F Trends in pharmacological sciences 35232591 2022 Sep
Single domain antibodies against enteric pathogen virulence factors are active as curli fiber fusions on probiotic E. coli Nissle 1917. Gelfat, Ilia; Aqeel, Yousuf; Tremblay, Jacqueline M; Jaskiewicz, Justyna J; Shrestha, Anishma; Lee, James N; Hu, Shenglan; Qian, Xi; Magoun, Loranne; Sheoran, Abhineet; Bedenice, Daniela; Giem, Colter; Manjula-Basavanna, Avinash; Pulsifer, Amanda R; Tu, Hann X; Li, Xiaoli; Minus, Marilyn L; Osburne, Marcia S; Tzipori, Saul; Shoemaker, Charles B; Leong, John M; Joshi, Neel S PLoS pathogens 36107831 2022 Sep
A conserved Bacteroidetes antigen induces anti-inflammatory intestinal T lymphocytes. Bousbaine, Djenet; Fisch, Laura I; London, Mariya; Bhagchandani, Preksha; Rezende de Castro, Tiago B; Mimee, Mark; Olesen, Scott; Reis, Bernardo S; VanInsberghe, David; Bortolatto, Juliana; Poyet, Mathilde; Cheloha, Ross W; Sidney, John; Ling, Jingjing; Gupta, Aaron; Lu, Timothy K; Sette, Alessandro; Alm, Eric J; Moon, James J; Victora, Gabriel D; Mucida, Daniel; Ploegh, Hidde L; Bilate, Angelina M Science (New York, N.Y.) 35926021 2022 Aug 05
Repairing the blood-brain barrier. McMahon, Andrew P; Ichida, Justin K Science (New York, N.Y.) 35175806 2022 Feb 18
Transcription factor Acj6 controls dendrite targeting via a combinatorial cell-surface code. Xie, Qijing; Li, Jiefu; Li, Hongjie; Udeshi, Namrata D; Svinkina, Tanya; Orlin, Daniel; Kohani, Sayeh; Guajardo, Ricardo; Mani, D R; Xu, Chuanyun; Li, Tongchao; Han, Shuo; Wei, Wei; Shuster, S Andrew; Luginbuhl, David J; Quake, Stephen R; Murthy, Swetha E; Ting, Alice Y; Carr, Steven A; Luo, Liqun Neuron 35613619 2022 Jul 20
A genetic model for in vivo proximity labelling of the mammalian secretome. Yang, Rui; Meyer, Amanda S; Droujinine, Ilia A; Udeshi, Namrata D; Hu, Yanhui; Guo, Jinjin; McMahon, Jill A; Carey, Dominique K; Xu, Charles; Fang, Qiao; Sha, Jihui; Qin, Shishang; Rocco, David; Wohlschlegel, James; Ting, Alice Y; Carr, Steven A; Perrimon, Norbert; McMahon, Andrew P Open biology 35946312 2022 Aug
Identifying Common Molecular Mechanisms in Experimental and Human Acute Kidney Injury. Gerhardt, Louisa M S; McMahon, Andrew P Seminars in nephrology 36402654 2022 May
Cardiomyocytes disrupt pyrimidine biosynthesis in nonmyocytes to regulate heart repair. Li, Shen; Yokota, Tomohiro; Wang, Ping; Ten Hoeve, Johanna; Ma, Feiyang; Le, Thuc M; Abt, Evan R; Zhou, Yonggang; Wu, Rimao; Nanthavongdouangsy, Maxine; Rodriguez, Abraham; Wang, Yijie; Lin, Yen-Ju; Muranaka, Hayato; Sharpley, Mark; Braddock, Demetrios T; MacRae, Vicky E; Banerjee, Utpal; Chiou, Pei-Yu; Seldin, Marcus; Huang, Dian; Teitell, Michael; Gertsman, Ilya; Jung, Michael; Bensinger, Steven J; Damoiseaux, Robert; Faull, Kym; Pellegrini, Matteo; Lusis, Aldons J; Graeber, Thomas G; Radu, Caius G; Deb, Arjun The Journal of clinical investigation 34813507 2022 Jan 18
Hippo Signaling Pathway Activation during SARS-CoV-2 Infection Contributes to Host Antiviral Response. Garcia Jr, Gustavo; Wang, Yijie; Ignatius Irudayam, Joseph; Jeyachandran, Arjit Vijey; Cario, Sebastian Castillo; Sen, Chandani; Li, Shen; Li, Yunfeng; Kumar, Ashok; Nielsen-Saines, Karin; French, Samuel W; Shah, Priya S; Morizono, Kouki; Gomperts, Brigitte; Deb, Arjun; Ramaiah, Arunachalam; Arumugaswami, Vaithilingaraja bioRxiv : the preprint server for biology 35441167 2022 Apr 08
High-dose rifampin improves bactericidal activity without increased intracerebral inflammation in animal models of tuberculous meningitis. Ruiz-Bedoya, Camilo A; Mota, Filipa; Tucker, Elizabeth W; Mahmud, Farina J; Reyes-Mantilla, Maria I; Erice, Clara; Bahr, Melissa; Flavahan, Kelly; de Jesus, Patricia; Kim, John; Foss, Catherine A; Peloquin, Charles A; Hammoud, Dima A; Ordonez, Alvaro A; Pardo, Carlos A; Jain, Sanjay K The Journal of clinical investigation 35085105 2022 Mar 15
Membrane Mixer: A Toolkit for Efficient Shuffling of Lipids in Heterogeneous Biological Membranes. Licari, Giuseppe; Dehghani-Ghahnaviyeh, Sepehr; Tajkhorshid, Emad Journal of chemical information and modeling 35104125 2022 Feb 28
Identification of structural transitions in bacterial fatty acid binding proteins that permit ligand entry and exit at membranes. Gullett, Jessica M; Cuypers, Maxime G; Grace, Christy R; Pant, Shashank; Subramanian, Chitra; Tajkhorshid, Emad; Rock, Charles O; White, Stephen W The Journal of biological chemistry 35122790 2022 Mar
Electrophysiological signatures of inhibitory control in children with Tourette syndrome and attention-deficit/hyperactivity disorder. Morand-Beaulieu, Simon; Smith, Stephanie D; Ibrahim, Karim; Wu, Jia; Leckman, James F; Crowley, Michael J; Sukhodolsky, Denis G Cortex; a journal devoted to the study of the nervous system and behavior 35042055 2022 Feb
Neuroligin-3 confines AMPA receptors into nanoclusters, thereby controlling synaptic strength at the calyx of Held synapses. Han, Ying; Cao, Ran; Qin, Liming; Chen, Lulu Y; Tang, Ai-Hui; Südhof, Thomas C; Zhang, Bo Science advances 35704570 2022 Jun 17
Analyses of the autism-associated neuroligin-3 R451C mutation in human neurons reveal a gain-of-function synaptic mechanism. Wang, Le; Mirabella, Vincent R; Dai, Rujia; Su, Xiao; Xu, Ranjie; Jadali, Azadeh; Bernabucci, Matteo; Singh, Ishnoor; Chen, Yu; Tian, Jianghua; Jiang, Peng; Kwan, Kevin Y; Pak, ChangHui; Liu, Chunyu; Comoletti, Davide; Hart, Ronald P; Chen, Chao; Südhof, Thomas C; Pang, Zhiping P Molecular psychiatry 36280753 2022 Oct 24
Controlling the crowd with a WNK. Holt, Liam Joseph; Denes, Lance T Cell 36423576 2022 Nov 23
Macromolecular crowding limits growth under pressure. Alric, Baptiste; Formosa-Dague, Cécile; Dague, Etienne; Holt, Liam J; Delarue, Morgan Nature physics 37152719 2022 Apr
Stem cell therapy for central nervous system disorders: Metabolic interactions between transplanted cells and local microenvironments. Sakowski, Stacey A; Chen, Kevin S Neurobiology of disease 35988874 2022 Oct 15
Systems Biology Analysis of Temporal Dynamics That Govern Endothelial Response to Cyclic Stretch. Lai, Michael W; Chow, Nathan; Checco, Antonio; Kunar, Balvir; Redmond, David; Rafii, Shahin; Rabbany, Sina Y Biomolecules 36551265 2022 Dec 08
ExCel: Super-Resolution Imaging of C. elegans with Expansion Microscopy. Yu, Chih-Chieh Jay; Orozco Cosio, Danielle M; Boyden, Edward S Methods in molecular biology (Clifton, N.J.) 35320565 2022
Sharing Begins at Home: How Continuous and Ubiquitous FAIRness Can Enhance Research Productivity and Data Reuse. Dempsey, William; Foster, Ian; Fraser, Scott; Kesselman, Carl Harvard data science review 36035065 2022
Structure and engineering of the minimal type VI CRISPR-Cas13bt3. Nakagawa, Ryoya; Kannan, Soumya; Altae-Tran, Han; Takeda, Satoru N; Tomita, Atsuhiro; Hirano, Hisato; Kusakizako, Tsukasa; Nishizawa, Tomohiro; Yamashita, Keitaro; Zhang, Feng; Nishimasu, Hiroshi; Nureki, Osamu Molecular cell 36027912 2022 Sep 01
Telemedicine and visit completion among people with HIV during the coronavirus disease 2019 pandemic compared with prepandemic. El-Nahal, Walid G; Shen, Nicola M; Keruly, Jeanne C; Jones, Joyce L; Fojo, Anthony T; Lau, Bryan; Manabe, Yukari C; Moore, Richard D; Gebo, Kelly A; Lesko, Catherine R; Chander, Geetanjali AIDS (London, England) 34711737 2022 Mar 01
Spatially resolved epigenomic profiling of single cells in complex tissues. Lu, Tian; Ang, Cheen Euong; Zhuang, Xiaowei Cell 36272405 2022 Nov 10
The adaptive aging brain. Aron, Liviu; Zullo, Joseph; Yankner, Bruce A Current opinion in neurobiology 34689041 2022 02
Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder. Lim, Elaine T; Chan, Yingleong; Dawes, Pepper; Guo, Xiaoge; Erdin, Serkan; Tai, Derek J C; Liu, Songlei; Reichert, Julia M; Burns, Mannix J; Chan, Ying Kai; Chiang, Jessica J; Meyer, Katharina; Zhang, Xiaochang; Walsh, Christopher A; Yankner, Bruce A; Raychaudhuri, Soumya; Hirschhorn, Joel N; Gusella, James F; Talkowski, Michael E; Church, George M Nature communications 35688811 2022 Jun 10
Fluorescent labeling of abundant reactive entities (FLARE) for cleared-tissue and super-resolution microscopy. Lee, Min Yen; Mao, Chenyi; Glaser, Adam K; Woodworth, Marcus A; Halpern, Aaron R; Ali, Adilijiang; Liu, Jonathan T C; Vaughan, Joshua C Nature protocols 35110740 2022 Mar
Embryo model completes gastrulation to neurulation and organogenesis. Amadei, Gianluca; Handford, Charlotte E; Qiu, Chengxiang; De Jonghe, Joachim; Greenfeld, Hannah; Tran, Martin; Martin, Beth K; Chen, Dong-Yuan; Aguilera-Castrejon, Alejandro; Hanna, Jacob H; Elowitz, Michael B; Hollfelder, Florian; Shendure, Jay; Glover, David M; Zernicka-Goetz, Magdalena Nature 36007540 2022 Oct
Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation. Finet, Olivier; Yague-Sanz, Carlo; Krüger, Lara Katharina; Tran, Phong; Migeot, Valérie; Louski, Max; Nevers, Alicia; Rougemaille, Mathieu; Sun, Jingjing; Ernst, Felix G M; Wacheul, Ludivine; Wery, Maxime; Morillon, Antonin; Dedon, Peter; Lafontaine, Denis L J; Hermand, Damien Molecular cell 34798057 2022 Jan 20
A Bcl6 Intronic Element Regulates T Follicular Helper Cell Differentiation. Lai, Chen-Yen; Marcel, Nimi; Yaldiko, Allen W; Delpoux, Arnaud; Hedrick, Stephen M Journal of immunology (Baltimore, Md. : 1950) 35948398 2022 Sep 15
Circadian disruption of hippocampus in an early senescence male mouse model. Davis, Jennifer A; Paul, Jodi R; Mokashi, Mugdha V; Yates, Stefani A; Mount, Daniel J; Munir, Hira A; Goode, Lacy K; Young, Martin E; Allison, David B; Gamble, Karen L Pharmacology, biochemistry, and behavior 35447158 2022 Jun
Lutetium background radiation in total-body PET-A simulation study on opportunities and challenges in PET attenuation correction. Omidvari, Negar; Cheng, Li; Leung, Edwin K; Abdelhafez, Yasser G; Badawi, Ramsey D; Ma, Tianyu; Qi, Jinyi; Cherry, Simon R Frontiers in nuclear medicine (Lausanne, Switzerland) 36172601 2022
RNA sequencing-based screen for reactivation of silenced alleles of autosomal genes. Gupta, Saumya; Lafontaine, Denis L; Vigneau, Sebastien; Mendelevich, Asia; Vinogradova, Svetlana; Igarashi, Kyomi J; Bortvin, Andrew; Alves-Pereira, Clara F; Nag, Anwesha; Gimelbrant, Alexander A G3 (Bethesda, Md.) 35100361 2022 Feb 04
Ataxia-linked SLC1A3 mutations alter EAAT1 chloride channel activity and glial regulation of CNS function. Wu, Qianyi; Akhter, Azman; Pant, Shashank; Cho, Eunjoo; Zhu, Jin Xin; Garner, Alastair; Ohyama, Tomoko; Tajkhorshid, Emad; van Meyel, Donald J; Ryan, Renae M The Journal of clinical investigation 35167492 2022 Apr 01
Posttranslational modifications optimize the ability of SARS-CoV-2 spike for effective interaction with host cell receptors. Kapoor, Karan; Chen, Tianle; Tajkhorshid, Emad Proceedings of the National Academy of Sciences of the United States of America 35737823 2022 07 12
Molecular View into Preferential Binding of the Factor VII Gla Domain to Phosphatidic Acid. Muller, Melanie P; Morrissey, James H; Tajkhorshid, Emad Biochemistry 35853076 2022 Aug 16
Live analysis of position-effect variegation in Drosophila reveals different modes of action for HP1a and Su(var)3-9. Bughio, Farah J; Maggert, Keith A Proceedings of the National Academy of Sciences of the United States of America 35704756 2022 Jun 21
FZD2 Regulates Murine Hair Follicle Function and Maintenance. Brennan-Crispi, Donna M; Frankfurter, Maxwell; Murphy, Christina; Sheng, Emily; Xu, Mingang; Morrisey, Edward E; Millar, Sarah E; Leung, Thomas H The Journal of investigative dermatology 35051380 2022 Aug
Systematically quantifying morphological features reveals constraints on organoid phenotypes. Beck, Lauren E; Lee, Jasmine; Coté, Christopher; Dunagin, Margaret C; Lukonin, Ilya; Salla, Nikkita; Chang, Marcello K; Hughes, Alex J; Mornin, Joseph D; Gartner, Zev J; Liberali, Prisca; Raj, Arjun Cell systems 35705097 2022 Jul 20
Allelic correlation is a marker of trade-offs between barriers to transmission of expression variability and signal responsiveness in genetic networks. Boe, Ryan H; Ayyappan, Vinay; Schuh, Lea; Raj, Arjun Cell systems 36450286 2022 Dec 21
Nanoarchitecture and molecular interactions of epithelial cell junction proteins revealed by super-resolution microscopy. Naser, Amna N; Guiler, William; Lu, Qun; Chen, Yan-Hua Annals of the New York Academy of Sciences 35819053 2022 Oct
Targeting BCL-XL in fibrolamellar hepatocellular carcinoma. Shebl, Bassem; Ng, Denise; Lalazar, Gadi; Rosemore, Carly; Finkelstein, Tova M; Migler, Rachael D; Zheng, Guangrong; Zhang, Peiyi; Jiang, Caroline S; Qureshi, Adam; Vaughan, Roger; Yarchoan, Mark; de Jong, Ype P; Rice, Charles M; Coffino, Philip; Ortiz, Michael V; Zhou, Daohong; Simon, Sanford M JCI insight 36073545 2022 Sep 08
Human hepatocyte PNPLA3-148M exacerbates rapid non-alcoholic fatty liver disease development in chimeric mice. Kabbani, Mohammad; Michailidis, Eleftherios; Steensels, Sandra; Fulmer, Clifton G; Luna, Joseph M; Le Pen, Jérémie; Tardelli, Matteo; Razooky, Brandon; Ricardo-Lax, Inna; Zou, Chenhui; Zeck, Briana; Stenzel, Ansgar F; Quirk, Corrine; Foquet, Lander; Ashbrook, Alison W; Schneider, William M; Belkaya, Serkan; Lalazar, Gadi; Liang, Yupu; Pittman, Meredith; Devisscher, Lindsey; Suemizu, Hiroshi; Theise, Neil D; Chiriboga, Luis; Cohen, David E; Copenhaver, Robert; Grompe, Markus; Meuleman, Philip; Ersoy, Baran A; Rice, Charles M; de Jong, Ype P Cell reports 36103835 2022 Sep 13
Emerging technologies and their impact on regulatory science. Anklam, Elke; Bahl, Martin Iain; Ball, Robert; Beger, Richard D; Cohen, Jonathan; Fitzpatrick, Suzanne; Girard, Philippe; Halamoda-Kenzaoui, Blanka; Hinton, Denise; Hirose, Akihiko; Hoeveler, Arnd; Honma, Masamitsu; Hugas, Marta; Ishida, Seichi; Kass, George En; Kojima, Hajime; Krefting, Ira; Liachenko, Serguei; Liu, Yan; Masters, Shane; Marx, Uwe; McCarthy, Timothy; Mercer, Tim; Patri, Anil; Pelaez, Carmen; Pirmohamed, Munir; Platz, Stefan; Ribeiro, Alexandre Js; Rodricks, Joseph V; Rusyn, Ivan; Salek, Reza M; Schoonjans, Reinhilde; Silva, Primal; Svendsen, Clive N; Sumner, Susan; Sung, Kyung; Tagle, Danilo; Tong, Li; Tong, Weida; Eijnden-van-Raaij, Janny van den; Vary, Neil; Wang, Tao; Waterton, John; Wang, May; Wen, Hairuo; Wishart, David; Yuan, Yinyin; Slikker Jr, William Experimental biology and medicine (Maywood, N.J.) 34783606 2022 01
Tissue-resident memory and circulating T cells are early responders to pre-surgical cancer immunotherapy. Luoma, Adrienne M; Suo, Shengbao; Wang, Yifan; Gunasti, Lauren; Porter, Caroline B M; Nabilsi, Nancy; Tadros, Jenny; Ferretti, Andrew P; Liao, Sida; Gurer, Cagan; Chen, Yu-Hui; Criscitiello, Shana; Ricker, Cora A; Dionne, Danielle; Rozenblatt-Rosen, Orit; Uppaluri, Ravindra; Haddad, Robert I; Ashenberg, Orr; Regev, Aviv; Van Allen, Eliezer M; MacBeath, Gavin; Schoenfeld, Jonathan D; Wucherpfennig, Kai W Cell 35803260 2022 Aug 04
Wearable aptamer-field-effect transistor sensing system for noninvasive cortisol monitoring. Wang, Bo; Zhao, Chuanzhen; Wang, Zhaoqing; Yang, Kyung-Ae; Cheng, Xuanbing; Liu, Wenfei; Yu, Wenzhuo; Lin, Shuyu; Zhao, Yichao; Cheung, Kevin M; Lin, Haisong; Hojaiji, Hannaneh; Weiss, Paul S; Stojanović, Milan N; Tomiyama, A Janet; Andrews, Anne M; Emaminejad, Sam Science advances 34985954 2022 Jan 07
Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription. Goronzy, Isabel N; Quinodoz, Sofia A; Jachowicz, Joanna W; Ollikainen, Noah; Bhat, Prashant; Guttman, Mitchell Cell reports 36450242 2022 Nov 29
MiOS, an integrated imaging and computational strategy to model gene folding with nucleosome resolution. Neguembor, Maria Victoria; Arcon, Juan Pablo; Buitrago, Diana; Lema, Rafael; Walther, Jürgen; Garate, Ximena; Martin, Laura; Romero, Pablo; AlHaj Abed, Jumana; Gut, Marta; Blanc, Julie; Lakadamyali, Melike; Wu, Chao-Ting; Brun Heath, Isabelle; Orozco, Modesto; Dans, Pablo D; Cosma, Maria Pia Nature structural & molecular biology 36220894 2022 Oct
Isolation and Processing of Murine White Adipocytes for Transcriptome and Epigenome Analyses. Yang, Chih-Hsiang; Longinotto, John; Panzeri, Ilaria; Arrigoni, Laura; Wegert, Vanessa; Heyne, Steffen; Seifert, Gabriel; Lempradl, Adelheid; Bönisch, Ulrike; Pospisilik, John Andrew Journal of visualized experiments : JoVE 35786676 2022 Jun 16
Mortality of Mechanically Ventilated COVID-19 Patients in Traditional versus Expanded Intensive Care Units in New York. Nishikimi, Mitsuaki; Jafari, Daniel; Singh, Neha; Shinozaki, Koichiro; Sison, Cristina P; Shoaib, Muhammad; Gong, Jonathan; Rasul, Rehana; Li, Timmy; Hayashida, Kei; Rolston, Daniel M; Miyara, Santiago J; Hirsch, Jamie S; Gandomi, Amir; White, Maureen T; Jarrett, Mark P; Lesser, Martin L; Becker, Lance B; Northwell Health COVID-19 Research Consortium Annals of the American Thoracic Society 35213292 2022 Aug
Expanding Knowledge and Changing Attitudes About Poverty: An Interactive, Interprofessional Approach. Marrast, Lyndonna M; Chim, Christine; Tocco, Jack; Coletti, Daniel J; Nouryan, Christian; Block, Lauren; Martinez, Johanna Journal of primary care & community health 35225052 2022
Series of virtual light therapy interventions for fatigue: a feasibility pilot study protocol for a series of personalised (N-of-1) trials. Butler, Mark; D'Angelo, Stefani; Lewis, Courtney; Miller, Danielle; Perrin, Alexandra; Suls, Jerry; Chandereng, Thevaa; Cheung, Ying Kuen; Davidson, Karina W BMJ open 36283748 2022 Oct 25
The Family of Single-Case Experimental Designs. Epstein, Leonard H; Dallery, Jesse Harvard data science review 36926648 2022
Synthetic mammalian signaling circuits for robust cell population control. Ma, Yitong; Budde, Mark W; Mayalu, Michaëlle N; Zhu, Junqin; Lu, Andrew C; Murray, Richard M; Elowitz, Michael B Cell 35235768 2022 Mar 17
Ozone Disinfection for Elimination of Bacteria and Degradation of SARS-CoV2 RNA for Medical Environments. Westover, Craig; Rahmatulloev, Savlatjon; Danko, David; Afshin, Evan E; O'Hara, Niamh B; Ounit, Rachid; Bezdan, Daniela; Mason, Christopher E Genes 36672826 2022 Dec 28
Barriers to and Facilitators for Acceptance of Comprehensive Clinical Decision Support System-Driven Care Maps for Patients With Thoracic Trauma: Interview Study Among Health Care Providers and Nurses. Jones, Emma K; Banks, Alyssa; Melton, Genevieve B; Porta, Carolyn M; Tignanelli, Christopher J JMIR human factors 35293873 2022 Mar 16
Association of race/ethnicity with mortality in patients hospitalized with COVID-19. Richardson, Safiya; Martinez, Johanna; Hirsch, Jamie S; Cerise, Jane; Lesser, Martin; Roswell, Robert O; Davidson, Karina W; Northwell Health COVID-19 Research Consortium PloS one 35925973 2022
Assessing the Validity of the Ask Suicide-Screening Questions in Black Youth. Horowitz, Lisa M; Mournet, Annabelle M; Sheftall, Arielle; He, Jian-Ping; Lowry, Nathan J; Aguinaldo, Laika D; Sullivant, Shayla A; Wharff, Elizabeth A; Merikangas, Kathleen R; Pao, Maryland; Bridge, Jeffrey A Journal of the Academy of Consultation-Liaison Psychiatry 36273745 2022 Oct 20
CIC missense variants contribute to susceptibility for spina bifida. Han, Xiao; Cao, Xuanye; Aguiar-Pulido, Vanessa; Yang, Wei; Karki, Menuka; Ramirez, Paula Andrea Pimienta; Cabrera, Robert M; Lin, Ying Linda; Wlodarczyk, Bogdan J; Shaw, Gary M; Ross, M Elizabeth; Zhang, Cuilian; Finnell, Richard H; Lei, Yunping Human mutation 36054333 2022 Dec
Macroautophagy in CNS health and disease. Griffey, Christopher J; Yamamoto, Ai Nature reviews. Neuroscience 35505254 2022 Jul
Emerging insights into the complex genetics and pathophysiology of amyotrophic lateral sclerosis. Goutman, Stephen A; Hardiman, Orla; Al-Chalabi, Ammar; Chió, Adriano; Savelieff, Masha G; Kiernan, Matthew C; Feldman, Eva L The Lancet. Neurology 35334234 2022 May
Amyotrophic lateral sclerosis. Feldman, Eva L; Goutman, Stephen A; Petri, Susanne; Mazzini, Letizia; Savelieff, Masha G; Shaw, Pamela J; Sobue, Gen Lancet (London, England) 36116464 2022 Oct 15
HDACs regulate the differentiation of endothelial cells from human iPSCs. Li, Tao; Wu, Haopeng; Wang, Pingping; Kim, Amy M; Jia, Junjing; Nolta, Jan A; Zhou, Ping Cell biochemistry and function 35789099 2022 Aug
Total-body PET/CT - First Clinical Experiences and Future Perspectives. Ng, Quinn Kwan-Tai; Triumbari, Elizabeth Katherine Anna; Omidvari, Negar; Cherry, Simon R; Badawi, Ramsey D; Nardo, Lorenzo Seminars in nuclear medicine 35272853 2022 May
Relating18F-FDG image signal-to-noise ratio to time-of-flight noise-equivalent count rate in total-body PET using the uEXPLORER scanner. Leung, Edwin K; Abdelhafez, Yasser G; Berg, Eric; Xie, Zhaoheng; Zhang, Xuezhu; Bayerlein, Reimund; Spencer, Benjamin; Li, Elizabeth; Omidvari, Negar; Selfridge, Aaron; Cherry, Simon R; Qi, Jinyi; Badawi, Ramsey D Physics in medicine and biology 35609588 2022 Jun 10
Water-Soluble Luminescent Silicon Nanocrystals by Plasma-Induced Acrylic Acid Grafting and PEGylation. Li, Zhaohan; Mahajan, Advitiya; Andaraarachchi, Himashi P; Lee, Yeonjoo; Kortshagen, Uwe R ACS applied bio materials 35014827 2022 Jan 17
Distance-dependent resonance energy transfer in alkyl-terminated Si nanocrystal solids. Li, Zhaohan; Robinson, Zachary L; Elvati, Paolo; Violi, Angela; Kortshagen, Uwe R The Journal of chemical physics 35364875 2022 Mar 28
Tuning the Sensitivity of Genetically Encoded Fluorescent Potassium Indicators through Structure-Guided and Genome Mining Strategies. Torres Cabán, Cristina C; Yang, Minghan; Lai, Cuixin; Yang, Lina; Subach, Fedor V; Smith, Brian O; Piatkevich, Kiryl D; Boyden, Edward S ACS sensors 35427452 2022 May 27
Optogenetic Stimulation of Midbrain Dopamine Neurons Produces Striatal Serotonin Release. Dagher, Merel; Perrotta, Katie A; Erwin, Sara A; Hachisuka, Ayaka; Iyer, Rahul; Masmanidis, Sotiris C; Yang, Hongyan; Andrews, Anne M ACS chemical neuroscience 35312275 2022 Apr 06
The tumour-associated microbiome. Johnston, Christopher D; Bullman, Susan Nature reviews. Gastroenterology & hepatology 35361914 2022 Jun
A bacterial pan-genome makes gene essentiality strain-dependent and evolvable. Rosconi, Federico; Rudmann, Emily; Li, Jien; Surujon, Defne; Anthony, Jon; Frank, Matthew; Jones, Dakota S; Rock, Charles; Rosch, Jason W; Johnston, Christopher D; van Opijnen, Tim Nature microbiology 36097170 2022 Oct
Joint modeling of zero-inflated longitudinal proportions and time-to-event data with application to a gut microbiome study. Hu, Jiyuan; Wang, Chan; Blaser, Martin J; Li, Huilin Biometrics 34213763 2022 Dec
In Silico Genome Analysis Reveals the Evolution and Potential Impact of SARS-CoV-2 Omicron Structural Changes on Host Immune Evasion and Antiviral Therapeutics. Chauhan, Dhruv; Chakravarty, Nikhil; Jeyachandran, Arjit Vijey; Jayakarunakaran, Akshaya; Sinha, Sanjeev; Mishra, Rakesh; Arumugaswami, Vaithilingaraja; Ramaiah, Arunachalam Viruses 36366559 2022 Nov 06
Cytomegalovirus infections in infants in Uganda: Newborn-mother pairs, neonates with sepsis, and infants with hydrocephalus. Hehnly, Christine; Ssentongo, Paddy; Bebell, Lisa M; Burgoine, Kathy; Bazira, Joel; Fronterre, Claudio; Kumbakumba, Elias; Mulondo, Ronald; Mbabazi-Kabachelor, Edith; Morton, Sarah U; Ngonzi, Joseph; Ochora, Moses; Olupot-Olupot, Peter; Mugamba, John; Onen, Justin; Roberts, Drucilla J; Sheldon, Kathryn; Sinnar, Shamim A; Smith, Jasmine; Ssenyonga, Peter; Kiwanuka, Julius; Paulson, Joseph N; Meier, Frederick A; Ericson, Jessica E; Broach, James R; Schiff, Steven J International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 35150915 2022 May
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Coordination of tumor growth and host wasting by tumor-derived Upd3. Ding, Guangming; Xiang, Xiaoxiang; Hu, Yanhui; Xiao, Gen; Chen, Yuchen; Binari, Richard; Comjean, Aram; Li, Jiaying; Rushworth, Elisabeth; Fu, Zhenming; Mohr, Stephanie E; Perrimon, Norbert; Song, Wei Cell reports 34407411 2021 08 17
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Recording Temporal Signals with Minutes Resolution Using Enzymatic DNA Synthesis. Bhan, Namita; Callisto, Alec; Strutz, Jonathan; Glaser, Joshua; Kalhor, Reza; Boyden, Edward S; Church, George; Kording, Konrad; Tyo, Keith E J Journal of the American Chemical Society 34591459 2021 10 13
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Altered Neuronal Support and Inflammatory Response in Bipolar Disorder Patient-Derived Astrocytes. Vadodaria, Krishna C; Mendes, Ana P D; Mei, Arianna; Racha, Vipula; Erikson, Galina; Shokhirev, Maxim N; Oefner, Ruth; Heard, Kelly J; McCarthy, Michael J; Eyler, Lisa; Kelsoe, John R; Santos, Renata; Marchetto, Maria C; Gage, Fred H Stem cell reports 33667413 2021 04 13
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Characterization of the public transit air microbiome and resistome reveals geographical specificity. Leung, M H Y; Tong, X; Bøifot, K O; Bezdan, D; Butler, D J; Danko, D C; Gohli, J; Green, D C; Hernandez, M T; Kelly, F J; Levy, S; Mason-Buck, G; Nieto-Caballero, M; Syndercombe-Court, D; Udekwu, K; Young, B G; Mason, C E; Dybwad, M; Lee, P K H Microbiome 34039416 2021 05 26
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study. Foox, Jonathan; Tighe, Scott W; Nicolet, Charles M; Zook, Justin M; Byrska-Bishop, Marta; Clarke, Wayne E; Khayat, Michael M; Mahmoud, Medhat; Laaguiby, Phoebe K; Herbert, Zachary T; Warner, Derek; Grills, George S; Jen, Jin; Levy, Shawn; Xiang, Jenny; Alonso, Alicia; Zhao, Xia; Zhang, Wenwei; Teng, Fei; Zhao, Yonggang; Lu, Haorong; Schroth, Gary P; Narzisi, Giuseppe; Farmerie, William; Sedlazeck, Fritz J; Baldwin, Don A; Mason, Christopher E Nature biotechnology 34504351 2021 Sep
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Examination of patient characteristics and hydroxychloroquine use based on the US Food and Drug Administration's recommendation: a cross-sectional analysis in New York. Kim, Eun Ji; Coppa, Kevin; Hirsch, Jamie S; Abrahams, Sara; Johnson, Jennifer; Lesser, Martin; Davidson, Karina W; Conigliaro, Joseph; Northwell Health COVID-19 Research Consortium; Northwell Health COVID-19 Research Consortium BMJ open 33558355 2021 02 08
Intubated COVID-19 predictive (ICOP) score for early mortality after intubation in patients with COVID-19. Nishikimi, Mitsuaki; Rasul, Rehana; Sison, Cristina P; Jafari, Daniel; Shoaib, Muhammad; Shinozaki, Koichiro; Li, Timmy; Hayashida, Kei; Rolston, Daniel M; Hirsch, Jamie S; Becker, Lance B; Northwell Health COVID-19 Research Consortium Scientific reports 34702896 2021 10 26
FMRP regulates mRNAs encoding distinct functions in the cell body and dendrites of CA1 pyramidal neurons. Hale, Caryn R; Sawicka, Kirsty; Mora, Kevin; Fak, John J; Kang, Jin Joo; Cutrim, Paula; Cialowicz, Katarzyna; Carroll, Thomas S; Darnell, Robert B eLife 34939924 2021 Dec 23
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Behavioral and neurobiological effects of GnRH agonist treatment in mice-potential implications for puberty suppression in transgender individuals. Anacker, Christoph; Sydnor, Ezra; Chen, Briana K; LaGamma, Christina C; McGowan, Josephine C; Mastrodonato, Alessia; Hunsberger, Holly C; Shores, Ryan; Dixon, Rushell S; McEwen, Bruce S; Byne, William; Meyer-Bahlburg, Heino F L; Bockting, Walter; Ehrhardt, Anke A; Denny, Christine A Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 32919399 2021 04
Scanner Design Considerations for Long Axial Field-of-View PET Systems. Daube-Witherspoon, Margaret E; Cherry, Simon R PET clinics 33160929 2021 Jan
3D/4D Reconstruction and Quantitative Total Body Imaging. Qi, Jinyi; Matej, Samuel; Wang, Guobao; Zhang, Xuezhu PET clinics 33218603 2021 Jan
Protein design and variant prediction using autoregressive generative models. Shin, Jung-Eun; Riesselman, Adam J; Kollasch, Aaron W; McMahon, Conor; Simon, Elana; Sander, Chris; Manglik, Aashish; Kruse, Andrew C; Marks, Debora S Nature communications 33893299 2021 04 23
In situ genome sequencing resolves DNA sequence and structure in intact biological samples. Payne, Andrew C; Chiang, Zachary D; Reginato, Paul L; Mangiameli, Sarah M; Murray, Evan M; Yao, Chun-Chen; Markoulaki, Styliani; Earl, Andrew S; Labade, Ajay S; Jaenisch, Rudolf; Church, George M; Boyden, Edward S; Buenrostro, Jason D; Chen, Fei Science (New York, N.Y.) 33384301 2021 02 26
Narrower Nanoribbon Biosensors Fabricated by Chemical Lift-off Lithography Show Higher Sensitivity. Zhao, Chuanzhen; Liu, Qingzhou; Cheung, Kevin M; Liu, Wenfei; Yang, Qing; Xu, Xiaobin; Man, Tianxing; Weiss, Paul S; Zhou, Chongwu; Andrews, Anne M ACS nano 33337135 2021 01 26
Implantable aptamer-field-effect transistor neuroprobes for in vivo neurotransmitter monitoring. Zhao, Chuanzhen; Cheung, Kevin M; Huang, I-Wen; Yang, Hongyan; Nakatsuka, Nako; Liu, Wenfei; Cao, Yan; Man, Tianxing; Weiss, Paul S; Monbouquette, Harold G; Andrews, Anne M Science advances 34818033 2021 Nov 26
Complete Genome Sequence of Arachnia rubra Strain DSM 100122T, a Cultured Member of the Human Oral Microbiome. Ouellette, Matthew; Bejian, Andrew A; Chen, Tsute; Jones, Dakota S; Johnston, Christopher D; Dewhirst, Floyd E Microbiology resource announcements 34854708 2021 Dec 02
Harnessing the microbiome to restore immunotherapy response. Bullman, Susan; Eggermont, Alexander; Johnston, Christopher D; Zitvogel, Laurence Nature cancer 35121929 2021 Dec
Capsules for biomedical image segmentation. LaLonde, Rodney; Xu, Ziyue; Irmakci, Ismail; Jain, Sanjay; Bagci, Ulas Medical image analysis 33246227 2021 02
Kit-based synthesis of 2-deoxy-2-[18F]-fluoro-D-sorbitol for bacterial imaging. Mota, Filipa; De Jesus, Patricia; Jain, Sanjay K Nature protocols 34686858 2021 Nov
Organophosphorus flame retardants are developmental neurotoxicants in a rat primary brainsphere in vitro model. Hogberg, Helena T; de Cássia da Silveira E Sá, Rita; Kleensang, Andre; Bouhifd, Mounir; Cemiloglu Ulker, Ozge; Smirnova, Lena; Behl, Mamta; Maertens, Alexandra; Zhao, Liang; Hartung, Thomas Archives of toxicology 33078273 2021 01
COVID-19 mortality rate in children is U-shaped. Khera, Nina; Santesmasses, Didac; Kerepesi, Csaba; Gladyshev, Vadim N Aging 34411000 2021 08 18
Identification of a therapeutic interfering particle-A single-dose SARS-CoV-2 antiviral intervention with a high barrier to resistance. Chaturvedi, Sonali; Vasen, Gustavo; Pablo, Michael; Chen, Xinyue; Beutler, Nathan; Kumar, Arjun; Tanner, Elizabeth; Illouz, Sylvia; Rahgoshay, Donna; Burnett, John; Holguin, Leo; Chen, Pei-Yi; Ndjamen, Blaise; Ott, Melanie; Rodick, Robert; Rogers, Thomas; Smith, Davey M; Weinberger, Leor S Cell 34838159 2021 Dec 09
Pan-African evolution of within- and between-country COVID-19 dynamics. Ssentongo, Paddy; Fronterre, Claudio; Geronimo, Andrew; Greybush, Steven J; Mbabazi, Pamela K; Muvawala, Joseph; Nahalamba, Sarah B; Omadi, Philip O; Opar, Bernard T; Sinnar, Shamim A; Wang, Yan; Whalen, Andrew J; Held, Leonhard; Jewell, Christopher; Muwanguzi, Abraham J B; Greatrex, Helen; Norton, Michael M; Diggle, Peter J; Schiff, Steven J Proceedings of the National Academy of Sciences of the United States of America 34187879 2021 Jul 13
Brain growth after surgical treatment for infant postinfectious hydrocephalus in Sub-Saharan Africa: 2-year results of a randomized trial. Schiff, Steven J; Kulkarni, Abhaya V; Mbabazi-Kabachelor, Edith; Mugamba, John; Ssenyonga, Peter; Donnelly, Ruth; Levenbach, Jody; Monga, Vishal; Peterson, Mallory; Cherukuri, Venkateswararao; Warf, Benjamin C Journal of neurosurgery. Pediatrics 34243157 2021 Jul 09
The Cortical Motor Areas and the Emergence of Motor Skills: A Neuroanatomical Perspective. Strick, Peter L; Dum, Richard P; Rathelot, Jean-Alban Annual review of neuroscience 33863253 2021 07 08
High-speed three-dimensional photoacoustic computed tomography for preclinical research and clinical translation. Lin, Li; Hu, Peng; Tong, Xin; Na, Shuai; Cao, Rui; Yuan, Xiaoyun; Garrett, David C; Shi, Junhui; Maslov, Konstantin; Wang, Lihong V Nature communications 33563996 2021 Feb 09
A host metabolite promotes Salmonella survival. Lynch, Jason P; Lesser, Cammie F Science (New York, N.Y.) 33479138 2021 01 22
Proteomics of protein trafficking by in vivo tissue-specific labeling. Droujinine, Ilia A; Meyer, Amanda S; Wang, Dan; Udeshi, Namrata D; Hu, Yanhui; Rocco, David; McMahon, Jill A; Yang, Rui; Guo, JinJin; Mu, Luye; Carey, Dominique K; Svinkina, Tanya; Zeng, Rebecca; Branon, Tess; Tabatabai, Areya; Bosch, Justin A; Asara, John M; Ting, Alice Y; Carr, Steven A; McMahon, Andrew P; Perrimon, Norbert Nature communications 33888706 2021 Apr 22
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Visualizing the dynamics of tuberculosis pathology using molecular imaging. Ordonez, Alvaro A; Tucker, Elizabeth W; Anderson, Carolyn J; Carter, Claire L; Ganatra, Shashank; Kaushal, Deepak; Kramnik, Igor; Lin, Philana L; Madigan, Cressida A; Mendez, Susana; Rao, Jianghong; Savic, Rada M; Tobin, David M; Walzl, Gerhard; Wilkinson, Robert J; Lacourciere, Karen A; Via, Laura E; Jain, Sanjay K The Journal of clinical investigation 33645551 2021 03 01
Imaging Enterobacterales infections in patients using pathogen-specific positron emission tomography. Ordonez, Alvaro A; Wintaco, Luz M; Mota, Filipa; Restrepo, Andres F; Ruiz-Bedoya, Camilo A; Reyes, Carlos F; Uribe, Luis G; Abhishek, Sudhanshu; D'Alessio, Franco R; Holt, Daniel P; Dannals, Robert F; Rowe, Steven P; Castillo, Victor R; Pomper, Martin G; Granados, Ulises; Jain, Sanjay K Science translational medicine 33853931 2021 04 14
Genetic re-direction of canine primary T cells for clinical trial use in pet dogs with spontaneous cancer. Rotolo, Antonia; Atherton, Matthew J; Kasper, Brian T; Haran, Kumudhini P; Mason, Nicola J STAR protocols 34746864 2021 Dec 17
Venous Waveform Analysis Correlates With Echocardiography in Detecting Hypovolemia in a Rat Hemorrhage Model. Lefevre, Ryan J; Balzer, Claudius; Baudenbacher, Franz J; Riess, Matthias L; Hernandez, Antonio; Eagle, Susan S Seminars in cardiothoracic and vascular anesthesia 32957831 2021 Mar
To eat, or not to eat, that is the question: Neural stem cells escape phagocytosis in autism with macrocephaly. Schafer, Simon T; Gage, Fred H Proceedings of the National Academy of Sciences of the United States of America 33883269 2021 05 11
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Programmable protein circuit design. Chen, Zibo; Elowitz, Michael B Cell 33848464 2021 04 29
Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain. Lu, Shaina; Ortiz, Cantin; Fürth, Daniel; Fischer, Stephan; Meletis, Konstantinos; Zador, Anthony; Gillis, Jesse PLoS biology 34280183 2021 07
Conformational changes in the nucleotide-binding domains of P-glycoprotein induced by ATP hydrolysis. Dehghani-Ghahnaviyeh, Sepehr; Kapoor, Karan; Tajkhorshid, Emad FEBS letters 33159693 2021 03
A cancer mutation promotes EphA4 oligomerization and signaling by altering the conformation of the SAM domain. Light, Taylor P; Gomez-Soler, Maricel; Wang, Zichen; Karl, Kelly; Zapata-Mercado, Elmer; Gehring, Marina P; Lechtenberg, Bernhard C; Pogorelov, Taras V; Hristova, Kalina; Pasquale, Elena B The Journal of biological chemistry 34139238 2021 07
PIP2-dependent coupling of voltage sensor and pore domains in Kv7.2 channel. Pant, Shashank; Zhang, Jiaren; Kim, Eung Chang; Lam, Kin; Chung, Hee Jung; Tajkhorshid, Emad Communications biology 34650221 2021 10 14
Fluoroethylnormemantine, A Novel Derivative of Memantine, Facilitates Extinction Learning Without Sensorimotor Deficits. Chen, Briana K; Le Pen, Gwenaëlle; Eckmier, Adam; Rubinstenn, Gilles; Jay, Therese M; Denny, Christine A The international journal of neuropsychopharmacology 33631001 2021 07 14
Phenoxy Radical Reactivity of Nucleic Acids: Practical Implications for Biotinylation. Wilbanks, Brandon; Garcia, Brian; Byrne, Shane; Dedon, Peter; Maher 3rd, L James Chembiochem : a European journal of chemical biology 33368926 2021 04 16
Ectopic cervical thymi and no thymic involution until midlife in naked mole rats. Emmrich, Stephan; Tolibzoda Zakusilo, Frances; Trapp, Alexandre; Zhou, Xuming; Zhang, Quanwei; Irving, Ellen M; Drage, Michael G; Zhang, Zhengdong; Gladyshev, Vadim N; Seluanov, Andrei; Gorbunova, Vera Aging cell 34596321 2021 Oct
Genomic Mosaicism Formed by Somatic Variation in the Aging and Diseased Brain. Costantino, Isabel; Nicodemus, Juliet; Chun, Jerold Genes 34356087 2021 07 14
Characterization of Definitive Regulatory B Cell Subsets by Cell Surface Phenotype, Function and Context. Neu, Savannah D; Dittel, Bonnie N Frontiers in immunology 34987513 2021
Gun violence incidence during the COVID-19 pandemic is higher than before the pandemic in the United States. Ssentongo, Paddy; Fronterre, Claudio; Ssentongo, Anna E; Advani, Shailesh; Heilbrunn, Emily S; Hazelton, Joshua P; Oh, John S; McCall-Hosenfeld, Jennifer S; Chinchilli, Vernon M Scientific reports 34675321 2021 10 21
Conserved Gammaherpesvirus Protein Kinase Counters the Antiviral Effects of Myeloid Cell-Specific STAT1 Expression To Promote the Establishment of Splenic B Cell Latency. Sylvester, P A; Jondle, C N; Stoltz, K P; Lanham, J; Dittel, B N; Tarakanova, V L Journal of virology 34132573 2021 08 10
Pharmacological and genetic perturbation establish SIRT5 as a promising target in breast cancer. Abril, Yashira L Negrón; Fernandez, Irma R; Hong, Jun Young; Chiang, Ying-Ling; Kutateladze, Dennis A; Zhao, Qingjie; Yang, Min; Hu, Jing; Sadhukhan, Sushabhan; Li, Bo; He, Bin; Remick, Brenna; Bai, Jessica Jingyi; Mullmann, James; Wang, Fangyu; Maymi, Viviana; Dhawan, Ravi; Auwerx, Johan; Southard, Teresa; Cerione, Richard A; Lin, Hening; Weiss, Robert S Oncogene 33479498 2021 03
Clinical Implementation of Total-Body PET/CT at University of California, Davis. Nardo, Lorenzo; Abdelhafez, Yasser G; Spencer, Benjamin A; Badawi, Ramsey D PET clinics 33218600 2021 Jan
Performance Characteristics of Long Axial Field-of-View PET Scanners with Axial Gaps. Daube-Witherspoon, Margaret E; Viswanath, Varsha; Werner, Matthew E; Karp, Joel S IEEE transactions on radiation and plasma medical sciences 34179595 2021 May
Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes. Tvedte, Eric S; Gasser, Mark; Sparklin, Benjamin C; Michalski, Jane; Hjelmen, Carl E; Johnston, J Spencer; Zhao, Xuechu; Bromley, Robin; Tallon, Luke J; Sadzewicz, Lisa; Rasko, David A; Dunning Hotopp, Julie C G3 (Bethesda, Md.) 33768248 2021 Jun 17
Pim kinase inhibitor co-treatment decreases alternative non-homologous end-joining DNA repair and genomic instability induced by topoisomerase 2 inhibitors in cells with FLT3 internal tandem duplication. Scarpa, Mario; Kapoor, Shivani; Tvedte, Eric S; Doshi, Kshama A; Zou, Ying S; Singh, Prerna; Lee, Jonelle K; Chatterjee, Aditi; Ali, Moaath K Mustafa; Bromley, Robin E; Hotopp, Julie C Dunning; Rassool, Feyruz V; Baer, Maria R Oncotarget 34504649 2021 Aug 31
Structures and topological defects in pressure-driven lyotropic chromonic liquid crystals. Zhang, Qing; Zhang, Rui; Ge, Baoliang; Yaqoob, Zahid; So, Peter T C; Bischofberger, Irmgard Proceedings of the National Academy of Sciences of the United States of America 34446562 2021 08 31
Simultaneous serotonin and dopamine monitoring across timescales by rapid pulse voltammetry with partial least squares regression. Movassaghi, Cameron S; Perrotta, Katie A; Yang, Hongyan; Iyer, Rahul; Cheng, Xinyi; Dagher, Merel; Fillol, Miguel Alcañiz; Andrews, Anne M Analytical and bioanalytical chemistry 34686897 2021 Nov
The relationship between gastrointestinal cancers and the microbiota. LaCourse, Kaitlyn D; Johnston, Christopher D; Bullman, Susan The lancet. Gastroenterology & hepatology 33743198 2021 06
Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. Flores Ramos, Stephany; Brugger, Silvio D; Escapa, Isabel Fernandez; Skeete, Chelsey A; Cotton, Sean L; Eslami, Sara M; Gao, Wei; Bomar, Lindsey; Tran, Tommy H; Jones, Dakota S; Minot, Samuel; Roberts, Richard J; Johnston, Christopher D; Lemon, Katherine P mSystems 34546072 2021 Oct 26
Machine learning of EEG spectra classifies unconsciousness during GABAergic anesthesia. Abel, John H; Badgeley, Marcus A; Meschede-Krasa, Benyamin; Schamberg, Gabriel; Garwood, Indie C; Lecamwasam, Kimaya; Chakravarty, Sourish; Zhou, David W; Keating, Matthew; Purdon, Patrick L; Brown, Emery N PloS one 33956800 2021
Pathogenic LMNA variants disrupt cardiac lamina-chromatin interactions and de-repress alternative fate genes. Shah, Parisha P; Lv, Wenjian; Rhoades, Joshua H; Poleshko, Andrey; Abbey, Deepti; Caporizzo, Matthew A; Linares-Saldana, Ricardo; Heffler, Julie G; Sayed, Nazish; Thomas, Dilip; Wang, Qiaohong; Stanton, Liam J; Bedi, Kenneth; Morley, Michael P; Cappola, Thomas P; Owens, Anjali T; Margulies, Kenneth B; Frank, David B; Wu, Joseph C; Rader, Daniel J; Yang, Wenli; Prosser, Benjamin L; Musunuru, Kiran; Jain, Rajan Cell stem cell 33529599 2021 05 06
Selective axonal translation of the mRNA isoform encoding prenylated Cdc42 supports axon growth. Lee, Seung Joon; Zdradzinski, Matthew D; Sahoo, Pabitra K; Kar, Amar N; Patel, Priyanka; Kawaguchi, Riki; Aguilar, Byron J; Lantz, Kelsey D; McCain, Caylee R; Coppola, Giovanni; Lu, Qun; Twiss, Jeffery L Journal of cell science 33674450 2021 04 01
The cell biology of synapse formation. Südhof, Thomas C The Journal of cell biology 34086051 2021 Jul 05
Imaging cell lineage with a synthetic digital recording system. Chow, Ke-Huan K; Budde, Mark W; Granados, Alejandro A; Cabrera, Maria; Yoon, Shinae; Cho, Soomin; Huang, Ting-Hao; Koulena, Noushin; Frieda, Kirsten L; Cai, Long; Lois, Carlos; Elowitz, Michael B Science (New York, N.Y.) 33833095 2021 04 09
A Versatile Multichannel Instrument for Measurement of Ratiometric Fluorescence Intensity and Phosphorescence Lifetime. Zavareh, Amir Tofighi; Ko, Brian; Roberts, Jason; Elahi, Sakib; McShane, Michael J IEEE access : practical innovations, open solutions 34858770 2021
An early experience on the effect of solid organ transplant status on hospitalized COVID-19 patients. Nair, Vinay; Jandovitz, Nicholas; Hirsch, Jamie S; Abate, Mersema; Satapathy, Sanjaya K; Roth, Nitzan; Miyara, Santiago J; Guevara, Sara; Kressel, Adam M; Xiang, Alec; Wu, Grace; Butensky, Samuel D; Lin, David; Williams, Stephanie; Bhaskaran, Madhu C; Majure, David T; Grodstein, Elliot; Lau, Lawrence; Nair, Gayatri; Fahmy, Ahmed E; Winnick, Aaron; Breslin, Nadine; Berlinrut, Ilan; Molmenti, Christine; Becker, Lance B; Malhotra, Prashant; Gautam-Goyal, Pranisha; Lima, Brian; Maybaum, Simon; Shah, Samit K; Takegawa, Ryosuke; Hayashida, Kei; Shinozaki, Koichiro; Teperman, Lewis W; Molmenti, Ernesto P; Northwell Health COVID-19 Research Consortium American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 33443778 2021 Jul
A Machine Learning Prediction Model of Respiratory Failure Within 48 Hours of Patient Admission for COVID-19: Model Development and Validation. Bolourani, Siavash; Brenner, Max; Wang, Ping; McGinn, Thomas; Hirsch, Jamie S; Barnaby, Douglas; Zanos, Theodoros P; Northwell COVID-19 Research Consortium Journal of medical Internet research 33476281 2021 02 10
Effectiveness of SARS-CoV-2 Decontamination and Containment in a COVID-19 ICU. Brune, Zarina; Kuschner, Cyrus E; Mootz, Joseph; Davidson, Karina W; Pena, Robert C F; Ghanem, Mustafa H; Fischer, Austin; Gitman, Michael; Teperman, Lewis; Mason, Christopher; Becker, Lance B International journal of environmental research and public health 33802332 2021 03 03
Molecular self-avoidance in synaptic neurexin complexes. Wang, Cosmos Yuqi; Trotter, Justin H; Liakath-Ali, Kif; Lee, Sung-Jin; Liu, Xinran; Südhof, Thomas C Science advances 34919427 2021 Dec 17
CloudReg: automatic terabyte-scale cross-modal brain volume registration. Chandrashekhar, Vikram; Tward, Daniel J; Crowley, Devin; Crow, Ailey K; Wright, Matthew A; Hsueh, Brian Y; Gore, Felicity; Machado, Timothy A; Branch, Audrey; Rosenblum, Jared S; Deisseroth, Karl; Vogelstein, Joshua T Nature methods 34253927 2021 08
The evolution of red color vision is linked to coordinated rhodopsin tuning in lycaenid butterflies. Liénard, Marjorie A; Bernard, Gary D; Allen, Andrew; Lassance, Jean-Marc; Song, Siliang; Childers, Richard Rabideau; Yu, Nanfang; Ye, Dajia; Stephenson, Adriana; Valencia-Montoya, Wendy A; Salzman, Shayla; Whitaker, Melissa R L; Calonje, Michael; Zhang, Feng; Pierce, Naomi E Proceedings of the National Academy of Sciences of the United States of America 33547236 2021 02 09
Intercellular Arc Signaling Regulates Vasodilation. de la Peña, June Bryan; Barragan-Iglesias, Paulino; Lou, Tzu-Fang; Kunder, Nikesh; Loerch, Sarah; Shukla, Tarjani; Basavarajappa, Lokesh; Song, Jane; James, Dominique N; Megat, Salim; Moy, Jamie K; Wanghzou, Andi; Ray, Pradipta R; Hoyt, Kenneth; Steward, Oswald; Price, Theodore J; Shepherd, Jason; Campbell, Zachary T The Journal of neuroscience : the official journal of the Society for Neuroscience 34326146 2021 09 15
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Estimating the predictive value of negative severe acute respiratory coronavirus virus 2 (SARS-CoV-2) results: A prospective study. Hirschwerk, David; Foley, Mathew; Lesser, Martin; Farber, Bruce; Crawford, James M; Davidson, Karina W; Berry, Gregory J; Smith, Elizabeth; Kast, Charles; Volel, Vladimir; McGinn, Thomas Infection control and hospital epidemiology 33298203 2021 10
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An integrated program of computer-presented and physical cognitive training exercises for children with attention-deficit/hyperactivity disorder. Wexler, Bruce E; Vitulano, Lawrence A; Moore, Christina; Katsovich, Liliya; Smith, Stephanie D; Rush, Cindy; Grantz, Heidi; Dong, Jinxia; Leckman, James F Psychological medicine 32090720 2021 07
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The Problem of Microbial Dark Matter in Neonatal Sepsis. Sinnar, Shamim A; Schiff, Steven J Emerging infectious diseases 33080169 2020 Nov
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Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation. Yaffe, Eitan; Relman, David A Nature microbiology 31873203 2020 Feb
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Scalable Fabrication of Quasi-One-Dimensional Gold Nanoribbons for Plasmonic Sensing. Zhao, Chuanzhen; Xu, Xiaobin; Ferhan, Abdul Rahim; Chiang, Naihao; Jackman, Joshua A; Yang, Qing; Liu, Wenfei; Andrews, Anne M; Cho, Nam-Joon; Weiss, Paul S Nano letters 32027140 2020 03 11
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Flagging Bacteria with Radiolabeled d-Amino Acids. Mota, Filipa; Jain, Sanjay K ACS central science 32123728 2020 Feb 26
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Mechanistic Studies of the Multiple Myeloma and Melanoma Cell-Selective Toxicity of the Rpn13-Binding Peptoid KDT-11. Dickson, Paige; Simanski, Scott; Ngundu, John Maina; Kodadek, Thomas Cell chemical biology 32857986 2020 11 19
An inducible CRISPR interference library for genetic interrogation of Saccharomyces cerevisiae biology. Momen-Roknabadi, Amir; Oikonomou, Panos; Zegans, Maxwell; Tavazoie, Saeed Communications biology 33247197 2020 11 27
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Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer. Schuh, Lea; Saint-Antoine, Michael; Sanford, Eric M; Emert, Benjamin L; Singh, Abhyudai; Marr, Carsten; Raj, Arjun; Goyal, Yogesh Cell systems 32325034 2020 04 22
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Presenting Characteristics, Comorbidities, and Outcomes Among 5700 Patients Hospitalized With COVID-19 in the New York City Area. Richardson, Safiya; Hirsch, Jamie S; Narasimhan, Mangala; Crawford, James M; McGinn, Thomas; Davidson, Karina W; the Northwell COVID-19 Research Consortium; Barnaby, Douglas P; Becker, Lance B; Chelico, John D; Cohen, Stuart L; Cookingham, Jennifer; Coppa, Kevin; Diefenbach, Michael A; Dominello, Andrew J; Duer-Hefele, Joan; Falzon, Louise; Gitlin, Jordan; Hajizadeh, Negin; Harvin, Tiffany G; Hirschwerk, David A; Kim, Eun Ji; Kozel, Zachary M; Marrast, Lyndonna M; Mogavero, Jazmin N; Osorio, Gabrielle A; Qiu, Michael; Zanos, Theodoros P JAMA 32320003 2020 05 26
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Nuclear Periphery Takes Center Stage: The Role of Nuclear Pore Complexes in Cell Identity and Aging. Cho, Ukrae H; Hetzer, Martin W Neuron 32553207 2020 06 17
Expanding the AtLAS of non-coding RNA functions in the brain. Regier, Matthew J; Shepherd, Jason D Cell research 32111970 2020 04
Fibroblasts: The arbiters of extracellular matrix remodeling. DeLeon-Pennell, Kristine Y; Barker, Thomas H; Lindsey, Merry L Matrix biology : journal of the International Society for Matrix Biology 32504772 2020 09
Microfluidic enrichment of bacteria coupled to contact-free lysis on a magnetic polymer surface for downstream molecular detection. Burklund, Alison; Petryk, James D; Hoopes, P Jack; Zhang, John X J Biomicrofluidics 32642021 2020 May
Scalable Signature-Based Molecular Diagnostics Through On-chip Biomarker Profiling Coupled with Machine Learning. Molinski, John; Tadimety, Amogha; Burklund, Alison; Zhang, John X J Annals of biomedical engineering 32816167 2020 Oct
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m6A-binding YTHDF proteins promote stress granule formation. Fu, Ye; Zhuang, Xiaowei Nature chemical biology 32451507 2020 Sep
Feature-rich covalent stains for super-resolution and cleared tissue fluorescence microscopy. Mao, Chenyi; Lee, Min Yen; Jhan, Jing-Ru; Halpern, Aaron R; Woodworth, Marcus A; Glaser, Adam K; Chozinski, Tyler J; Shin, Leonard; Pippin, Jeffrey W; Shankland, Stuart J; Liu, Jonathan T C; Vaughan, Joshua C Science advances 32518827 2020 05
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Exome sequencing implicates genetic disruption of prenatal neuro-gliogenesis in sporadic congenital hydrocephalus. Jin, Sheng Chih; Dong, Weilai; Kundishora, Adam J; Panchagnula, Shreyas; Moreno-De-Luca, Andres; Furey, Charuta G; Allocco, August A; Walker, Rebecca L; Nelson-Williams, Carol; Smith, Hannah; Dunbar, Ashley; Conine, Sierra; Lu, Qiongshi; Zeng, Xue; Sierant, Michael C; Knight, James R; Sullivan, William; Duy, Phan Q; DeSpenza, Tyrone; Reeves, Benjamin C; Karimy, Jason K; Marlier, Arnaud; Castaldi, Christopher; Tikhonova, Irina R; Li, Boyang; Peña, Helena Perez; Broach, James R; Kabachelor, Edith M; Ssenyonga, Peter; Hehnly, Christine; Ge, Li; Keren, Boris; Timberlake, Andrew T; Goto, June; Mangano, Francesco T; Johnston, James M; Butler, William E; Warf, Benjamin C; Smith, Edward R; Schiff, Steven J; Limbrick Jr, David D; Heuer, Gregory; Jackson, Eric M; Iskandar, Bermans J; Mane, Shrikant; Haider, Shozeb; Guclu, Bulent; Bayri, Yasar; Sahin, Yener; Duncan, Charles C; Apuzzo, Michael L J; DiLuna, Michael L; Hoffman, Ellen J; Sestan, Nenad; Ment, Laura R; Alper, Seth L; Bilguvar, Kaya; Geschwind, Daniel H; Günel, Murat; Lifton, Richard P; Kahle, Kristopher T Nature medicine 33077954 2020 Nov
Planar Laser Activated Neuronal Scanning (PLANS) System for in vivo Flow Cytometry. Watson, Nicholas; Mondal, Sudip; DuPlissis, Andrew; Kim, Ki Hyun; Ben-Yakar, Adela Frontiers in optics. Annual Meeting of the Optical Society of America 35350105 2020 Sep
Precise T cell recognition programs designed by transcriptionally linking multiple receptors. Williams, Jasper Z; Allen, Greg M; Shah, Devan; Sterin, Igal S; Kim, Ki H; Garcia, Vivian P; Shavey, Gavin E; Yu, Wei; Puig-Saus, Cristina; Tsoi, Jennifer; Ribas, Antoni; Roybal, Kole T; Lim, Wendell A Science (New York, N.Y.) 33243890 2020 11 27
PennPET Explorer: Human Imaging on a Whole-Body Imager. Pantel, Austin R; Viswanath, Varsha; Daube-Witherspoon, Margaret E; Dubroff, Jacob G; Muehllehner, Gerd; Parma, Michael J; Pryma, Daniel A; Schubert, Erin K; Mankoff, David A; Karp, Joel S Journal of nuclear medicine : official publication, Society of Nuclear Medicine 31562224 2020 01
Numerical observer study of lesion detectability for a long axial field-of-view whole-body PET imager using the PennPET Explorer. Viswanath, Varsha; Daube Witherspoon, Margaret E; Karp, Joel S; Surti, Suleman Physics in medicine and biology 31816616 2020 01 24
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Physical and Functional Analysis of the Putative Rpn13 Inhibitor RA190. Dickson, Paige; Abegg, Daniel; Vinogradova, Ekaterina; Takaya, Junichiro; An, Hongchan; Simanski, Scott; Cravatt, Benjamin F; Adibekian, Alexander; Kodadek, Thomas Cell chemical biology 32857985 2020 11 19
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Clinical Usefulness of Bright White Light Therapy for Depressive Symptoms in Cancer Survivors: Results from a Series of Personalized (N-of-1) Trials. Kronish, Ian M; Cheung, Ying Kuen; Julian, Jacob; Parsons, Faith; Lee, Jenny; Yoon, Sunmoo; Valdimarsdottir, Heidis; Green, Paige; Suls, Jerry; Hershman, Dawn L; Davidson, Karina W Healthcare (Basel, Switzerland) 31905890 2019 Dec 30
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Microfluidics-Based Organism Isolation from Whole Blood: An Emerging Tool for Bloodstream Infection Diagnosis. Burklund, Alison; Zhang, John X J Annals of biomedical engineering 30980291 2019 Jul
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Dual lineage tracing shows that glomerular parietal epithelial cells can transdifferentiate toward the adult podocyte fate. Kaverina, Natalya V; Eng, Diana G; Freedman, Benjamin S; Kutz, J Nathan; Chozinski, Tyler J; Vaughan, Joshua C; Miner, Jeffrey H; Pippin, Jeffrey W; Shankland, Stuart J Kidney international 31200942 2019 09
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NMR: an essential structural tool for integrative studies of T cell development, pMHC ligand recognition and TCR mechanobiology. Mallis, Robert J; Brazin, Kristine N; Duke-Cohan, Jonathan S; Hwang, Wonmuk; Wang, Jia-Huai; Wagner, Gerhard; Arthanari, Haribabu; Lang, Matthew J; Reinherz, Ellis L Journal of biomolecular NMR 30815789 2019 Jul
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Mini EXPLORER II: a prototype high-sensitivity PET/CT scanner for companion animal whole body and human brain scanning. Lv, Yang; Lv, Xinyu; Liu, Weiping; Judenhofer, Martin S; Zwingenberger, Allison; Wisner, Erik; Berg, Eric; McKenney, Sarah; Leung, Edwin; Spencer, Benjamin A; Cherry, Simon R; Badawi, Ramsey D Physics in medicine and biology 30620929 2019 03 21
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A microrobotic system guided by photoacoustic computed tomography for targeted navigation in intestines in vivo. Wu, Zhiguang; Li, Lei; Yang, Yiran; Hu, Peng; Li, Yang; Yang, So-Yoon; Wang, Lihong V; Gao, Wei Science robotics 32632399 2019 Jul 31
Kidney-in-a-lymph node: A novel organogenesis assay to model human renal development and test nephron progenitor cell fates. Francipane, Maria Giovanna; Han, Bing; Oxburgh, Leif; Sims-Lucas, Sunder; Li, Zhongwei; Lagasse, Eric Journal of tissue engineering and regenerative medicine 31267702 2019 09
Implementing a Novel Quality Improvement-Based Approach to Data Quality Monitoring and Enhancement in a Multipurpose Clinical Registry. Pratt, Jesse; Jeffers, Daniel; King, Eileen C; Kappelman, Michael D; Collins, Jennifer; Margolis, Peter; Baron, Howard; Bass, Julie A; Bassett, Mikelle D; Beasley, Genie L; Benkov, Keith J; Bornstein, Jeffrey A; Cabrera, José M; Crandall, Wallace; Dancel, Liz D; Garin-Laflam, Monica P; Grunow, John E; Hirsch, Barry Z; Hoffenberg, Edward; Israel, Esther; Jester, Traci W; Kiparissi, Fevronia; Lakhole, Arathi; Lapsia, Sameer P; Minar, Phillip; Navarro, Fernando A; Neef, Haley; Park, K T; Pashankar, Dinesh S; Patel, Ashish S; Pineiro, Victor M; Samson, Charles M; Sandberg, Kelly C; Steiner, Steven J; Strople, Jennifer A; Sudel, Boris; Sullivan, Jillian S; Suskind, David L; Uppal, Vikas; Wali, Prateek D EGEMS (Washington, DC) 31646151 2019 Sep 30
Molecular transport through primary human small intestinal monolayers by culture on a collagen scaffold with a gradient of chemical cross-linking. Speer, Jennifer E; Gunasekara, Dulan B; Wang, Yuli; Fallon, John K; Attayek, Peter J; Smith, Philip C; Sims, Christopher E; Allbritton, Nancy L Journal of biological engineering 31061676 2019
Building a Thick Mucus Hydrogel Layer to Improve the Physiological Relevance of In Vitro Primary Colonic Epithelial Models. Wang, Y; Kim, R; Sims, C E; Allbritton, N L Cellular and molecular gastroenterology and hepatology 31356887 2019
Matrix Metalloproteinases in Pulmonary and Central Nervous System Tuberculosis-A Review. Rohlwink, Ursula K; Walker, Naomi F; Ordonez, Alvaro A; Li, Yifan J; Tucker, Elizabeth W; Elkington, Paul T; Wilkinson, Robert J; Wilkinson, Katalin A International journal of molecular sciences 30889803 2019 Mar 18
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Engineering of CRISPR-Cas12b for human genome editing. Strecker, Jonathan; Jones, Sara; Koopal, Balwina; Schmid-Burgk, Jonathan; Zetsche, Bernd; Gao, Linyi; Makarova, Kira S; Koonin, Eugene V; Zhang, Feng Nature communications 30670702 2019 01 22
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Nucleic Acid Detection of Plant Genes Using CRISPR-Cas13. Abudayyeh, Omar O; Gootenberg, Jonathan S; Kellner, Max J; Zhang, Feng The CRISPR journal 31225754 2019 06
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Multi-sensory Gamma Stimulation Ameliorates Alzheimer's-Associated Pathology and Improves Cognition. Martorell, Anthony J; Paulson, Abigail L; Suk, Ho-Jun; Abdurrob, Fatema; Drummond, Gabrielle T; Guan, Webster; Young, Jennie Z; Kim, David Nam-Woo; Kritskiy, Oleg; Barker, Scarlett J; Mangena, Vamsi; Prince, Stephanie M; Brown, Emery N; Chung, Kwanghun; Boyden, Edward S; Singer, Annabelle C; Tsai, Li-Huei Cell 30879788 2019 04 04
Structural Insights into the Lipid A Transport Pathway in MsbA. Padayatti, Pius S; Lee, Sung Chang; Stanfield, Robyn L; Wen, Po-Chao; Tajkhorshid, Emad; Wilson, Ian A; Zhang, Qinghai Structure (London, England : 1993) 31130486 2019 07 02
Biosensors Show the Pharmacokinetics of S-Ketamine in the Endoplasmic Reticulum. Bera, Kallol; Kamajaya, Aron; Shivange, Amol V; Muthusamy, Anand K; Nichols, Aaron L; Borden, Philip M; Grant, Stephen; Jeon, Janice; Lin, Elaine; Bishara, Ishak; Chin, Theodore M; Cohen, Bruce N; Kim, Charlene H; Unger, Elizabeth K; Tian, Lin; Marvin, Jonathan S; Looger, Loren L; Lester, Henry A Frontiers in cellular neuroscience 31798415 2019
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Modelling diastolic dysfunction in induced pluripotent stem cell-derived cardiomyocytes from hypertrophic cardiomyopathy patients. Wu, Haodi; Yang, Huaxiao; Rhee, June-Wha; Zhang, Joe Z; Lam, Chi Keung; Sallam, Karim; Chang, Alex C Y; Ma, Ning; Lee, Jaecheol; Zhang, Hao; Blau, Helen M; Bers, Donald M; Wu, Joseph C European heart journal 31219556 2019 12 01
Targeted Drug Delivery and Image-Guided Therapy of Heterogeneous Ovarian Cancer Using HER2-Targeted Theranostic Nanoparticles. Satpathy, Minati; Wang, Liya; Zielinski, Rafal J; Qian, Weiping; Wang, Y Andrew; Mohs, Aaron M; Kairdolf, Brad A; Ji, Xin; Capala, Jacek; Lipowska, Malgorzata; Nie, Shuming; Mao, Hui; Yang, Lily Theranostics 30809308 2019
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High-resolution, high-contrast mid-infrared imaging of fresh biological samples with ultraviolet-localized photoacoustic microscopy. Shi, Junhui; Wong, Terence T W; He, Yun; Li, Lei; Zhang, Ruiying; Yung, Christopher S; Hwang, Jeeseong; Maslov, Konstantin; Wang, Lihong V Nature photonics 31440304 2019 Sep
Angular-spectrum modeling of focusing light inside scattering media by optical phase conjugation. Yang, Jiamiao; Li, Jingwei; He, Sailing; Wang, Lihong V Optica 32025534 2019 Mar 20
Directed Evolution of Split APEX2 Peroxidase. Han, Yisu; Branon, Tess Caroline; Martell, Jeffrey D; Boassa, Daniela; Shechner, David; Ellisman, Mark H; Ting, Alice ACS chemical biology 30848125 2019 Apr 19
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Complete Genome Sequence of wAna, the Wolbachia Endosymbiont of Drosophila ananassae. Gasser, Mark T; Chung, Matthew; Bromley, Robin E; Nadendla, Suvarna; Dunning Hotopp, Julie C Microbiology resource announcements 31649084 2019 Oct 24
Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity. Jia, Ning; Mo, Charlie Y; Wang, Chongyuan; Eng, Edward T; Marraffini, Luciano A; Patel, Dinshaw J Molecular cell 30503773 2019 01 17
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Therapeutic Effect of Y-27632 on Tumorigenesis and Cisplatin-Induced Peripheral Sensory Loss through RhoA-NF-κB. Zhu, Yi; Howard, George A; Pittman, Keith; Boykin, Christi; Herring, Laura E; Wilkerson, Emily M; Verbanac, Kathryn; Lu, Qun Molecular cancer research : MCR 31189689 2019 09
Shaping of infant B cell receptor repertoires by environmental factors and infectious disease. Nielsen, Sandra C A; Roskin, Krishna M; Jackson, Katherine J L; Joshi, Shilpa A; Nejad, Parastu; Lee, Ji-Yeun; Wagar, Lisa E; Pham, Tho D; Hoh, Ramona A; Nguyen, Khoa D; Tsunemoto, Hannah Y; Patel, Sonal B; Tibshirani, Robert; Ley, Catherine; Davis, Mark M; Parsonnet, Julie; Boyd, Scott D Science translational medicine 30814336 2019 02 27
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Genome wide analysis of 3' UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish. Vejnar, Charles E; Abdel Messih, Mario; Takacs, Carter M; Yartseva, Valeria; Oikonomou, Panos; Christiano, Romain; Stoeckius, Marlon; Lau, Stephanie; Lee, Miler T; Beaudoin, Jean-Denis; Musaev, Damir; Darwich-Codore, Hiba; Walther, Tobias C; Tavazoie, Saeed; Cifuentes, Daniel; Giraldez, Antonio J Genome research 31227602 2019 Jul
Advances in the automation of whole-cell patch clamp technology. Suk, Ho-Jun; Boyden, Edward S; van Welie, Ingrid Journal of neuroscience methods 31336060 2019 10 01
Specific factors in blood from young but not old mice directly promote synapse formation and NMDA-receptor recruitment. Gan, Kathlyn J; Südhof, Thomas C Proceedings of the National Academy of Sciences of the United States of America 31160442 2019 06 18
Pathological priming causes developmental gene network heterochronicity in autistic subject-derived neurons. Schafer, Simon T; Paquola, Apua C M; Stern, Shani; Gosselin, David; Ku, Manching; Pena, Monique; Kuret, Thomas J M; Liyanage, Marvin; Mansour, Abed AlFatah; Jaeger, Baptiste N; Marchetto, Maria C; Glass, Christopher K; Mertens, Jerome; Gage, Fred H Nature neuroscience 30617258 2019 02
A conserved morphogenetic mechanism for epidermal ensheathment of nociceptive sensory neurites. Jiang, Nan; Rasmussen, Jeffrey P; Clanton, Joshua A; Rosenberg, Marci F; Luedke, Kory P; Cronan, Mark R; Parker, Edward D; Kim, Hyeon-Jin; Vaughan, Joshua C; Sagasti, Alvaro; Parrish, Jay Z eLife 30855229 2019 03 11
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Development and Application of the Metalloprotease Activity Multiplexed Bead-Based Immunoassay (MAMBI). Ahrens, Caroline C; Chiswick, Evan L; Ravindra, Kodihalli C; Miller, Miles A; Ramseier, Julie Y; Isaacson, Keith B; Lauffenburger, Douglas A; Griffith, Linda G Biochemistry 31474112 2019 09 24
Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator. You, Mingxu; Litke, Jacob L; Wu, Rigumula; Jaffrey, Samie R Cell chemical biology 30773480 2019 04 18
Imaging Pulmonary Foreign Body Reaction Using [125I]iodo-DPA-713 SPECT/CT in Mice. Sanchez-Bautista, Julian; Foss, Catherine A; Ordonez, Alvaro A; Klunk, Mariah H; Jain, Sanjay K Molecular imaging and biology 29987615 2019 04
Radiosynthesis and validation of [Carboxy-11 C]4-Aminobenzoic acid ([11 C]PABA), a PET radiotracer for imaging bacterial infections. Holt, Daniel P; Kalinda, Alvin S; Bambarger, Lauren E; Jain, Sanjay K; Dannals, Robert F Journal of labelled compounds & radiopharmaceuticals 30089334 2019 01
Molecular imaging of bacterial infections: Overcoming the barriers to clinical translation. Ordonez, Alvaro A; Sellmyer, Mark A; Gowrishankar, Gayatri; Ruiz-Bedoya, Camilo A; Tucker, Elizabeth W; Palestro, Christopher J; Hammoud, Dima A; Jain, Sanjay K Science translational medicine 31484790 2019 09 04
Molecular Imaging of Diabetic Foot Infections: New Tools for Old Questions. Ruiz-Bedoya, Camilo A; Gordon, Oren; Mota, Filipa; Abhishek, Sudhanshu; Tucker, Elizabeth W; Ordonez, Alvaro A; Jain, Sanjay K International journal of molecular sciences 31795077 2019 Nov 28
Ultrafast microfluidic synthesis of hierarchical triangular silver core-silica shell nanoplatelet toward enhanced cellular internalization. Hao, Nanjing; Nie, Yuan; Xu, Zhe; Zhang, John X J Journal of colloid and interface science 30771632 2019 Apr 15
Direct Reprogramming of Human Neurons Identifies MARCKSL1 as a Pathogenic Mediator of Valproic Acid-Induced Teratogenicity. Chanda, Soham; Ang, Cheen Euong; Lee, Qian Yi; Ghebrial, Michael; Haag, Daniel; Shibuya, Yohei; Wernig, Marius; Südhof, Thomas C Cell stem cell 31155484 2019 07 03
Neuroligin-4 Regulates Excitatory Synaptic Transmission in Human Neurons. Marro, Samuele G; Chanda, Soham; Yang, Nan; Janas, Justyna A; Valperga, Giulio; Trotter, Justin; Zhou, Bo; Merrill, Sean; Yousif, Issa; Shelby, Hannah; Vogel, Hannes; Kalani, M Yashar S; Südhof, Thomas C; Wernig, Marius Neuron 31257103 2019 08 21
DNA Microscopy: Optics-free Spatio-genetic Imaging by a Stand-Alone Chemical Reaction. Weinstein, Joshua A; Regev, Aviv; Zhang, Feng Cell 31230717 2019 06 27
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Quantitative quality-control metrics for in vivo oximetry in small vessels by visible light optical coherence tomography angiography. Liu, Rongrong; Song, Weiye; Backman, Vadim; Yi, Ji Biomedical optics express 30800493 2019 Feb 01
Biomaterial Scaffolds Recruit an Aggressive Population of Metastatic Tumor Cells In Vivo. Bushnell, Grace G; Hardas, Tejaswini P; Hartfield, Rachel M; Zhang, Yining; Oakes, Robert S; Ronquist, Scott; Chen, Haiming; Rajapakse, Indika; Wicha, Max S; Jeruss, Jacqueline S; Shea, Lonnie D Cancer research 30808673 2019 04 15
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Dexmedetomidine promotes biomimetic non-rapid eye movement stage 3 sleep in humans: A pilot study. Akeju, Oluwaseun; Hobbs, Lauren E; Gao, Lei; Burns, Sara M; Pavone, Kara J; Plummer, George S; Walsh, Elisa C; Houle, Tim T; Kim, Seong-Eun; Bianchi, Matt T; Ellenbogen, Jeffrey M; Brown, Emery N Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology 29154132 2018 Jan
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A DNA nanorobot functions as a cancer therapeutic in response to a molecular trigger in vivo. Li, Suping; Jiang, Qiao; Liu, Shaoli; Zhang, Yinlong; Tian, Yanhua; Song, Chen; Wang, Jing; Zou, Yiguo; Anderson, Gregory J; Han, Jing-Yan; Chang, Yung; Liu, Yan; Zhang, Chen; Chen, Liang; Zhou, Guangbiao; Nie, Guangjun; Yan, Hao; Ding, Baoquan; Zhao, Yuliang Nature biotechnology 29431737 2018 03
DNA origami nanostructures can exhibit preferential renal uptake and alleviate acute kidney injury. Jiang, Dawei; Ge, Zhilei; Im, Hyung-Jun; England, Christopher G; Ni, Dalong; Hou, Junjun; Zhang, Luhao; Kutyreff, Christopher J; Yan, Yongjun; Liu, Yan; Cho, Steve Y; Engle, Jonathan W; Shi, Jiye; Huang, Peng; Fan, Chunhai; Yan, Hao; Cai, Weibo Nature biomedical engineering 30505626 2018 Nov
Low agreement among reviewers evaluating the same NIH grant applications. Pier, Elizabeth L; Brauer, Markus; Filut, Amarette; Kaatz, Anna; Raclaw, Joshua; Nathan, Mitchell J; Ford, Cecilia E; Carnes, Molly Proceedings of the National Academy of Sciences of the United States of America 29507248 2018 Mar 20
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Polyserotonin Nanoparticles as Multifunctional Materials for Biomedical Applications. Nakatsuka, Nako; Hasani-Sadrabadi, Mohammad Mahdi; Cheung, Kevin M; Young, Thomas D; Bahlakeh, Ghasem; Moshaverinia, Alireza; Weiss, Paul S; Andrews, Anne M ACS nano 29664607 2018 05 22
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Bioengineered Systems and Designer Matrices That Recapitulate the Intestinal Stem Cell Niche. Wang, Yuli; Kim, Raehyun; Hinman, Samuel S; Zwarycz, Bailey; Magness, Scott T; Allbritton, Nancy L Cellular and molecular gastroenterology and hepatology 29675459 2018 Mar
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Biomimetic hierarchical walnut kernel-like and erythrocyte-like mesoporous silica nanomaterials: controllable synthesis and versatile applications. Hao, Nanjing; Nie, Yuan; Zhang, John X J Microporous and mesoporous materials : the official journal of the International Zeolite Association 29479288 2018 May 01
Tunable Buckled Beams with Mesoporous PVDF-TrFE/SWCNT Composite Film for Energy Harvesting. Xu, Zhe; Liu, Yin; Dong, Lin; Closson, Andrew B; Hao, Nanjing; Oglesby, Meagan; Escobar, Gladys Patricia; Fu, Sidan; Han, Xiaomin; Wen, Chunsheng; Liu, Jifeng; Feldman, Marc David; Chen, Zi; Zhang, John X J ACS applied materials & interfaces 30199624 2018 Oct 03
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N-of-1 Randomized Intervention Trials in Health Psychology: A Systematic Review and Methodology Critique. Shaffer, Jonathan A; Kronish, Ian M; Falzon, Louise; Cheung, Ying Kuen; Davidson, Karina W Annals of behavioral medicine : a publication of the Society of Behavioral Medicine 30124759 2018 08 16
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APOE4 Causes Widespread Molecular and Cellular Alterations Associated with Alzheimer's Disease Phenotypes in Human iPSC-Derived Brain Cell Types. Lin, Yuan-Ta; Seo, Jinsoo; Gao, Fan; Feldman, Heather M; Wen, Hsin-Lan; Penney, Jay; Cam, Hugh P; Gjoneska, Elizabeta; Raja, Waseem K; Cheng, Jemmie; Rueda, Richard; Kritskiy, Oleg; Abdurrob, Fatema; Peng, Zhuyu; Milo, Blerta; Yu, Chung Jong; Elmsaouri, Sara; Dey, Dilip; Ko, Tak; Yankner, Bruce A; Tsai, Li-Huei Neuron 29861287 2018 06 27
Volumetric, Nanoscale Optical Imaging of Mouse and Human Kidney via Expansion Microscopy. Chozinski, Tyler J; Mao, Chenyi; Halpern, Aaron R; Pippin, Jeffrey W; Shankland, Stuart J; Alpers, Charles E; Najafian, Behzad; Vaughan, Joshua C Scientific reports 29991751 2018 Jul 10
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Dynamics and Spatial Genomics of the Nascent Transcriptome by Intron seqFISH. Shah, Sheel; Takei, Yodai; Zhou, Wen; Lubeck, Eric; Yun, Jina; Eng, Chee-Huat Linus; Koulena, Noushin; Cronin, Christopher; Karp, Christoph; Liaw, Eric J; Amin, Mina; Cai, Long Cell 29887381 2018 07 12
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Neural Population Dynamics Underlying Motor Learning Transfer. Vyas, Saurabh; Even-Chen, Nir; Stavisky, Sergey D; Ryu, Stephen I; Nuyujukian, Paul; Shenoy, Krishna V Neuron 29456026 2018 03 07
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Using proprioception to get a better grasp on embodiment. Marasco, Paul D The Journal of physiology 29194626 2018 Jan 15
Selected psychological comorbidities in coronary heart disease: Challenges and grand opportunities. Davidson, Karina W; Alcántara, Carmela; Miller, Gregory E The American psychologist 30394780 2018 11
3D nanofabrication by volumetric deposition and controlled shrinkage of patterned scaffolds. Oran, Daniel; Rodriques, Samuel G; Gao, Ruixuan; Asano, Shoh; Skylar-Scott, Mark A; Chen, Fei; Tillberg, Paul W; Marblestone, Adam H; Boyden, Edward S Science (New York, N.Y.) 30545883 2018 12 14
A bright future? Optogenetics in the periphery for pain research and therapy. Mickle, Aaron D; Gereau 4th, Robert W Pain 30113949 2018 Sep
Illusory movement perception improves motor control for prosthetic hands. Marasco, Paul D; Hebert, Jacqueline S; Sensinger, Jon W; Shell, Courtney E; Schofield, Jonathon S; Thumser, Zachary C; Nataraj, Raviraj; Beckler, Dylan T; Dawson, Michael R; Blustein, Dan H; Gill, Satinder; Mensh, Brett D; Granja-Vazquez, Rafael; Newcomb, Madeline D; Carey, Jason P; Orzell, Beth M Science translational medicine 29540617 2018 03 14
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Late-life targeting of the IGF-1 receptor improves healthspan and lifespan in female mice. Mao, Kai; Quipildor, Gabriela Farias; Tabrizian, Tahmineh; Novaj, Ardijana; Guan, Fangxia; Walters, Ryan O; Delahaye, Fabien; Hubbard, Gene B; Ikeno, Yuji; Ejima, Keisuke; Li, Peng; Allison, David B; Salimi-Moosavi, Hossein; Beltran, Pedro J; Cohen, Pinchas; Barzilai, Nir; Huffman, Derek M Nature communications 29921922 2018 Jun 19
Who Resembles a Scientific Leader-Jack or Jill? How Implicit Bias Could Influence Research Grant Funding. Kolehmainen, Christine; Carnes, Molly Circulation 29459461 2018 Feb 20
Variability in pharmacologically-induced coma for treatment of refractory status epilepticus. An, Jingzhi; Jonnalagadda, Durga; Moura Junior, Valdery; Purdon, Patrick L; Brown, Emery N; Westover, M Brandon PloS one 30379935 2018
Rescue of Fragile X Syndrome Neurons by DNA Methylation Editing of the FMR1 Gene. Liu, X Shawn; Wu, Hao; Krzisch, Marine; Wu, Xuebing; Graef, John; Muffat, Julien; Hnisz, Denes; Li, Charles H; Yuan, Bingbing; Xu, Chuanyun; Li, Yun; Vershkov, Dan; Cacace, Angela; Young, Richard A; Jaenisch, Rudolf Cell 29456084 2018 02 22
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Unconventional function of an Achaete-Scute homolog as a terminal selector of nociceptive neuron identity. Masoudi, Neda; Tavazoie, Saeed; Glenwinkel, Lori; Ryu, Leesun; Kim, Kyuhyung; Hobert, Oliver PLoS biology 29672507 2018 04
Impact of event positioning algorithm on performance of a whole-body PET scanner using one-to-one coupled detectors. Surti, S; Karp, J S Physics in medicine and biology 29411709 2018 Mar 02
Grafting or pruning in the animal tree: lateral gene transfer and gene loss? Dunning Hotopp, Julie C BMC genomics 29914363 2018 Jun 18
Dark Classics in Chemical Neuroscience: 3,4-Methylenedioxymethamphetamine. Dunlap, Lee E; Andrews, Anne M; Olson, David E ACS chemical neuroscience 30001118 2018 10 17
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Tumour endothelial marker 1/endosialin-mediated targeting of human sarcoma. Guo, Y; Hu, J; Wang, Y; Peng, X; Min, J; Wang, J; Matthaiou, E; Cheng, Y; Sun, K; Tong, X; Fan, Y; Zhang, P J; Kandalaft, L E; Irving, M; Coukos, G; Li, C European journal of cancer (Oxford, England : 1990) 29304474 2018 02
Apoptosis-induced CXCL5 accelerates inflammation and growth of prostate tumor metastases in bone. Roca, Hernan; Jones, Jacqueline D; Purica, Marta C; Weidner, Savannah; Koh, Amy J; Kuo, Robert; Wilkinson, John E; Wang, Yugang; Daignault-Newton, Stephanie; Pienta, Kenneth J; Morgan, Todd M; Keller, Evan T; Nör, Jacques E; Shea, Lonnie D; McCauley, Laurie K The Journal of clinical investigation 29202471 2018 01 02
Histone demethylase LSD1 regulates hematopoietic stem cells homeostasis and protects from death by endotoxic shock. Wang, Jianxun; Saijo, Kaoru; Skola, Dylan; Jin, Chunyu; Ma, Qi; Merkurjev, Daria; Glass, Christopher K; Rosenfeld, Michael G Proceedings of the National Academy of Sciences of the United States of America 29263096 2018 Jan 09
High-resolution deep functional imaging of the whole mouse brain by photoacoustic computed tomography in vivo. Zhang, Pengfei; Li, Lei; Lin, Li; Hu, Peng; Shi, Junhui; He, Yun; Zhu, Liren; Zhou, Yong; Wang, Lihong V Journal of biophotonics 28635056 2018 Jan
High-throughput ultraviolet photoacoustic microscopy with multifocal excitation. Imai, Toru; Shi, Junhui; Wong, Terence T W; Li, Lei; Zhu, Liren; Wang, Lihong V Journal of biomedical optics 29546734 2018 Mar
Recent progress in photoacoustic molecular imaging. Yao, Junjie; Wang, Lihong V Current opinion in chemical biology 29631120 2018 08
Small near-infrared photochromic protein for photoacoustic multi-contrast imaging and detection of protein interactions in vivo. Li, Lei; Shemetov, Anton A; Baloban, Mikhail; Hu, Peng; Zhu, Liren; Shcherbakova, Daria M; Zhang, Ruiying; Shi, Junhui; Yao, Junjie; Wang, Lihong V; Verkhusha, Vladislav V Nature communications 30013153 2018 Jul 16
Dual-view photoacoustic microscopy for quantitative cell nuclear imaging. Cai, De; Wong, Terence T W; Zhu, Liren; Shi, Junhui; Chen, Sung-Liang; Wang, Lihong V Optics letters 30320772 2018 Oct 15
Tumor characterization by ultrasound-release of multiple protein and microRNA biomarkers, preclinical and clinical evidence. D'Souza, Aloma L; Chevillet, John R; Ghanouni, Pejman; Yan, Xinrui; Tewari, Muneesh; Gambhir, Sanjiv S PloS one 29547636 2018
Droplet Digital PCR for Absolute Quantification of Extracellular MicroRNAs in Plasma and Serum: Quantification of the Cancer Biomarker hsa-miR-141. Giraldez, Maria D; Chevillet, John R; Tewari, Muneesh Methods in molecular biology (Clifton, N.J.) 29717459 2018
Using a network organisational architecture to support the development of Learning Healthcare Systems. Britto, Maria T; Fuller, Sandra C; Kaplan, Heather C; Kotagal, Uma; Lannon, Carole; Margolis, Peter A; Muething, Stephen E; Schoettker, Pamela J; Seid, Michael BMJ quality & safety 29438072 2018 11
"A Guide to Gutsy Living": Patient-Driven Development of a Pediatric Ostomy Toolkit. David, Jennie G; Jofriet, Alexander; Seid, Michael; Margolis, Peter A; ImproveCareNow Pediatric IBD Learning Health System Pediatrics 29610402 2018 May
Engineered CRISPR-Cas9 nuclease with expanded targeting space. Nishimasu, Hiroshi; Shi, Xi; Ishiguro, Soh; Gao, Linyi; Hirano, Seiichi; Okazaki, Sae; Noda, Taichi; Abudayyeh, Omar O; Gootenberg, Jonathan S; Mori, Hideto; Oura, Seiya; Holmes, Benjamin; Tanaka, Mamoru; Seki, Motoaki; Hirano, Hisato; Aburatani, Hiroyuki; Ishitani, Ryuichiro; Ikawa, Masahito; Yachie, Nozomu; Zhang, Feng; Nureki, Osamu Science (New York, N.Y.) 30166441 2018 09 21
Development of Arrayed Colonic Organoids for Screening of Secretagogues Associated with Enterotoxins. Gunasekara, Dulan B; DiSalvo, Matthew; Wang, Yuli; Nguyen, Daniel L; Reed, Mark I; Speer, Jennifer; Sims, Christopher E; Magness, Scott T; Allbritton, Nancy L Analytical chemistry 29281259 2018 Feb 06
A Monolayer of Primary Colonic Epithelium Generated on a Scaffold with a Gradient of Stiffness for Drug Transport Studies. Gunasekara, Dulan B; Speer, Jennifer; Wang, Yuli; Nguyen, Daniel L; Reed, Mark I; Smiddy, Nicole M; Parker, Joel S; Fallon, John K; Smith, Philip C; Sims, Christopher E; Magness, Scott T; Allbritton, Nancy L Analytical chemistry 30350627 2018 11 20
Pharmacokinetics of rifapentine and rifampin in a rabbit model of tuberculosis and correlation with clinical trial data. Rifat, Dalin; Prideaux, Brendan; Savic, Radojka M; Urbanowski, Michael E; Parsons, Teresa L; Luna, Brian; Marzinke, Mark A; Ordonez, Alvaro A; DeMarco, Vincent P; Jain, Sanjay K; Dartois, Veronique; Bishai, William R; Dooley, Kelly E Science translational medicine 29618565 2018 Apr 04
Body Mass Index and Subjective Social Status: The Coronary Artery Risk Development in Young Adults Study. Dhurandhar, Emily J; Pavela, Gregory; Kaiser, Kathryn A; Dutton, Gareth R; Fontaine, Kevin R; Kim, Daniel; Shikany, James M; Allison, David B; Lewis, Cora E Obesity (Silver Spring, Md.) 29280341 2018 Feb
No Significant Effect of Maternal Perception of the Food Environment on Reproductive Success or Pup Outcomes in C57BL/6J Mice. Gibbs, Victoria K; Schwartz, Tonia S; Johnson, Maria S; Patki, Amit; Nagy, Tim R; George, Brandon J; Allison, David B Obesity (Silver Spring, Md.) 29476611 2018 Apr
Age and the association of dementia-related pathology with trajectories of cognitive decline. Jansen, Willemijn J; Wilson, Robert S; Visser, Pieter Jelle; Nag, Sukriti; Schneider, Julie A; James, Bryan D; Leurgans, Sue E; Capuano, Ana W; Bennett, David A; Boyle, Patricia A Neurobiology of aging 29078129 2018 01
Microglial signatures and their role in health and disease. Butovsky, Oleg; Weiner, Howard L Nature reviews. Neuroscience 30206328 2018 10
A primary role for human central memory cells in tissue immunosurveillance. Gehad, Ahmed; Teague, Jessica E; Matos, Tiago R; Huang, Victor; Yang, Chao; Watanabe, Rei; O'Malley, John T; Trimble, Cornelia L; Kupper, Thomas S; Clark, Rachael A Blood advances 29437556 2018 02 13
Outcomes of intermediate-risk patients treated with transcatheter and surgical aortic valve replacement in the Veterans Affairs Healthcare System: A single center 20-year experience. Garcia, Santiago; Kelly, Rosemary; Mbai, Mackenzie; Gurevich, Sergey; Oestreich, Brett; Yannopoulos, Demetris; Adabag, Selcuk Catheterization and cardiovascular interventions : official journal of the Society for Cardiac Angiography & Interventions 29316204 2018 08 01
In vitro conversion of adult murine endothelial cells to hematopoietic stem cells. Barcia Durán, José Gabriel; Lis, Raphaël; Lu, Tyler M; Rafii, Shahin Nature protocols 30429596 2018 Dec
Microfluidics-enabled rational design of immunomagnetic nanomaterials and their shape effect on liquid biopsy. Hao, Nanjing; Nie, Yuan; Shen, Ting; Zhang, John X J Lab on a chip 29923569 2018 Jul 10
Microfluidics-enabled rapid manufacturing of hierarchical silica-magnetic microflower toward enhanced circulating tumor cell screening. Hao, Nanjing; Nie, Yuan; Tadimety, Amogha; Shen, Ting; Zhang, John X J Biomaterials science 30375583 2018 Nov 20
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Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling. Myers, Samuel A; Wright, Jason; Peckner, Ryan; Kalish, Brian T; Zhang, Feng; Carr, Steven A Nature methods 29735997 2018 06
Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons. Tekin, Halil; Simmons, Sean; Cummings, Beryl; Gao, Linyi; Adiconis, Xian; Hession, Cynthia C; Ghoshal, Ayan; Dionne, Danielle; Choudhury, Sourav R; Yesilyurt, Volkan; Sanjana, Neville E; Shi, Xi; Lu, Congyi; Heidenreich, Matthias; Pan, Jen Q; Levin, Joshua Z; Zhang, Feng Nature biomedical engineering 30271673 2018 Jul
Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region. Moffitt, Jeffrey R; Bambah-Mukku, Dhananjay; Eichhorn, Stephen W; Vaughn, Eric; Shekhar, Karthik; Perez, Julio D; Rubinstein, Nimrod D; Hao, Junjie; Regev, Aviv; Dulac, Catherine; Zhuang, Xiaowei Science (New York, N.Y.) 30385464 2018 Nov 16
TBK1 Suppresses RIPK1-Driven Apoptosis and Inflammation during Development and in Aging. Xu, Daichao; Jin, Taijie; Zhu, Hong; Chen, Hongbo; Ofengeim, Dimitry; Zou, Chengyu; Mifflin, Lauren; Pan, Lifeng; Amin, Palak; Li, Wanjin; Shan, Bing; Naito, Masanori Gomi; Meng, Huyan; Li, Ying; Pan, Heling; Aron, Liviu; Adiconis, Xian; Levin, Joshua Z; Yankner, Bruce A; Yuan, Junying Cell 30146158 2018 09 06
Brain activity patterns in high-throughput electrophysiology screen predict both drug efficacies and side effects. Eimon, Peter M; Ghannad-Rezaie, Mostafa; De Rienzo, Gianluca; Allalou, Amin; Wu, Yuelong; Gao, Mu; Roy, Ambrish; Skolnick, Jeffrey; Yanik, Mehmet Fatih Nature communications 29335539 2018 Jan 15
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Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1. Yamano, Takashi; Zetsche, Bernd; Ishitani, Ryuichiro; Zhang, Feng; Nishimasu, Hiroshi; Nureki, Osamu Molecular cell 28781234 2017 Aug 17
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Balancing the Risks of Radiation and Anesthesia in Pediatric Patients. Tucker, Elizabeth W; Jain, Sanjay K; Mahesh, Mahadevappa Journal of the American College of Radiology : JACR 28750847 2017 Nov
A multi-trap microfluidic chip enabling longitudinal studies of nerve regeneration in Caenorhabditis elegans. Gokce, Sertan Kutal; Hegarty, Evan Marley; Mondal, Sudip; Zhao, Peisen; Ghorashian, Navid; Hilliard, Massimo A; Ben-Yakar, Adela Scientific reports 28852096 2017 Aug 29
Variant surface glycoprotein density defines an immune evasion threshold for African trypanosomes undergoing antigenic variation. Pinger, Jason; Chowdhury, Shanin; Papavasiliou, F Nina Nature communications 29018220 2017 Oct 10
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Ultrafast Synthesis of Multifunctional Submicrometer Hollow Silica Spheres in Microfluidic Spiral Channels. Nie, Yuan; Hao, Nanjing; Zhang, John X J Scientific reports 28974729 2017 Oct 03
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Examining non-LTR retrotransposons in the context of the evolving primate brain. Linker, Sara B; Marchetto, Maria C; Narvaiza, Iñigo; Denli, Ahmet M; Gage, Fred H BMC biology 28800766 2017 Aug 11
Ancestral Circuits for the Coordinated Modulation of Brain State. Lovett-Barron, Matthew; Andalman, Aaron S; Allen, William E; Vesuna, Sam; Kauvar, Isaac; Burns, Vanessa M; Deisseroth, Karl Cell 29103613 2017 Nov 30
Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening. Joung, Julia; Konermann, Silvana; Gootenberg, Jonathan S; Abudayyeh, Omar O; Platt, Randall J; Brigham, Mark D; Sanjana, Neville E; Zhang, Feng Nature protocols 28333914 2017 Apr
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Dexmedetomidine Disrupts the Local and Global Efficiencies of Large-scale Brain Networks. Hashmi, Javeria A; Loggia, Marco L; Khan, Sheraz; Gao, Lei; Kim, Jieun; Napadow, Vitaly; Brown, Emery N; Akeju, Oluwaseun Anesthesiology 28092321 2017 Mar
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Small molecule modulator of sigma 2 receptor is neuroprotective and reduces cognitive deficits and neuroinflammation in experimental models of Alzheimer's disease. Yi, Bitna; Sahn, James J; Ardestani, Pooneh Memar; Evans, Andrew K; Scott, Luisa L; Chan, Jessica Z; Iyer, Sangeetha; Crisp, Ashley; Zuniga, Gabriella; Pierce, Jonathan T; Martin, Stephen F; Shamloo, Mehrdad Journal of neurochemistry 27926996 2017 Feb
The TREM2-APOE Pathway Drives the Transcriptional Phenotype of Dysfunctional Microglia in Neurodegenerative Diseases. Krasemann, Susanne; Madore, Charlotte; Cialic, Ron; Baufeld, Caroline; Calcagno, Narghes; El Fatimy, Rachid; Beckers, Lien; O'Loughlin, Elaine; Xu, Yang; Fanek, Zain; Greco, David J; Smith, Scott T; Tweet, George; Humulock, Zachary; Zrzavy, Tobias; Conde-Sanroman, Patricia; Gacias, Mar; Weng, Zhiping; Chen, Hao; Tjon, Emily; Mazaheri, Fargol; Hartmann, Kristin; Madi, Asaf; Ulrich, Jason D; Glatzel, Markus; Worthmann, Anna; Heeren, Joerg; Budnik, Bogdan; Lemere, Cynthia; Ikezu, Tsuneya; Heppner, Frank L; Litvak, Vladimir; Holtzman, David M; Lassmann, Hans; Weiner, Howard L; Ochando, Jordi; Haass, Christian; Butovsky, Oleg Immunity 28930663 2017 09 19
Alloimmune Responses of Humanized Mice to Human Pluripotent Stem Cell Therapeutics. Kooreman, Nigel G; de Almeida, Patricia E; Stack, Jonathan P; Nelakanti, Raman V; Diecke, Sebastian; Shao, Ning-Yi; Swijnenburg, Rutger-Jan; Sanchez-Freire, Veronica; Matsa, Elena; Liu, Chun; Connolly, Andrew J; Hamming, Jaap F; Quax, Paul H A; Brehm, Michael A; Greiner, Dale L; Shultz, Leonard D; Wu, Joseph C Cell reports 28834758 2017 Aug 22
IL-1R Type 1-Deficient Mice Demonstrate an Impaired Host Immune Response against Cutaneous Vaccinia Virus Infection. Tian, Tian; Jin, Michelle Qiushuang; Dubin, Krista; King, Sandra L; Hoetzenecker, Wolfram; Murphy, George F; Chen, Chen Amy; Kupper, Thomas S; Fuhlbrigge, Robert C Journal of immunology (Baltimore, Md. : 1950) 28468973 2017 06 01
Arginine Metabolism in Myeloid Cells Shapes Innate and Adaptive Immunity. Rodriguez, Paulo C; Ochoa, Augusto C; Al-Khami, Amir A Frontiers in immunology 28223985 2017
Energy metabolic pathways control the fate and function of myeloid immune cells. Al-Khami, Amir A; Rodriguez, Paulo C; Ochoa, Augusto C Journal of leukocyte biology 28515225 2017 08
Retinoic Acid Inducible Gene 1 Protein (RIG1)-Like Receptor Pathway Is Required for Efficient Nuclear Reprogramming. Sayed, Nazish; Ospino, Frank; Himmati, Farhan; Lee, Jieun; Chanda, Palas; Mocarski, Edward S; Cooke, John P Stem cells (Dayton, Ohio) 28276156 2017 05
Inhibition of DAI-dependent necroptosis by the Z-DNA binding domain of the vaccinia virus innate immune evasion protein, E3. Koehler, Heather; Cotsmire, Samantha; Langland, Jeffrey; Kibler, Karen V; Kalman, Daniel; Upton, Jason W; Mocarski, Edward S; Jacobs, Bertram L Proceedings of the National Academy of Sciences of the United States of America 29073079 2017 Oct 24
Fleeting factors, turning back time. Rando, Thomas A Nature biotechnology 28267729 2017 Mar 07
Aging of the skeletal muscle extracellular matrix drives a stem cell fibrogenic conversion. Stearns-Reider, Kristen M; D'Amore, Antonio; Beezhold, Kevin; Rothrauff, Benjamin; Cavalli, Loredana; Wagner, William R; Vorp, David A; Tsamis, Alkiviadis; Shinde, Sunita; Zhang, Changqing; Barchowsky, Aaron; Rando, Thomas A; Tuan, Rocky S; Ambrosio, Fabrisia Aging cell 28371268 2017 06
Bioengineered constructs combined with exercise enhance stem cell-mediated treatment of volumetric muscle loss. Quarta, Marco; Cromie, Melinda; Chacon, Robert; Blonigan, Justin; Garcia, Victor; Akimenko, Igor; Hamer, Mark; Paine, Patrick; Stok, Merel; Shrager, Joseph B; Rando, Thomas A Nature communications 28631758 2017 06 20
Transcriptional Profiling of Quiescent Muscle Stem Cells In Vivo. van Velthoven, Cindy T J; de Morree, Antoine; Egner, Ingrid M; Brett, Jamie O; Rando, Thomas A Cell reports 29141228 2017 Nov 14
SREBP1 Contributes to Resolution of Pro-inflammatory TLR4 Signaling by Reprogramming Fatty Acid Metabolism. Oishi, Yumiko; Spann, Nathanael J; Link, Verena M; Muse, Evan D; Strid, Tobias; Edillor, Chantle; Kolar, Matthew J; Matsuzaka, Takashi; Hayakawa, Sumio; Tao, Jenhan; Kaikkonen, Minna U; Carlin, Aaron F; Lam, Michael T; Manabe, Ichiro; Shimano, Hitoshi; Saghatelian, Alan; Glass, Christopher K Cell metabolism 28041958 2017 Feb 07
Use of a single xenon flash lamp for photoacoustic computed tomography of multiple-centimeter-thick biological tissue ex vivo and a whole mouse body in vivo. Wong, Terence T W; Zhou, Yong; Garcia-Uribe, Alejandro; Li, Lei; Maslov, Konstantin; Lin, Li; Wang, Lihong V Journal of biomedical optics 27775747 2017 Apr 01
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Release of Cell-free MicroRNA Tumor Biomarkers into the Blood Circulation with Pulsed Focused Ultrasound: A Noninvasive, Anatomically Localized, Molecular Liquid Biopsy. Chevillet, John R; Khokhlova, Tatiana D; Giraldez, Maria D; Schade, George R; Starr, Frank; Wang, Yak-Nam; Gallichotte, Emily N; Wang, Kai; Hwang, Joo Ha; Tewari, Muneesh Radiology 27802108 2017 Apr
A biomimetic gelatin-based platform elicits a pro-differentiation effect on podocytes through mechanotransduction. Hu, Mufeng; Azeloglu, Evren U; Ron, Amit; Tran-Ba, Khanh-Hoa; Calizo, Rhodora C; Tavassoly, Iman; Bhattacharya, Smiti; Jayaraman, Gomathi; Chen, Yibang; Rabinovich, Vera; Iyengar, Ravi; Hone, James C; He, John C; Kaufman, Laura J Scientific reports 28262745 2017 Mar 06
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Rapidly evolving homing CRISPR barcodes. Kalhor, Reza; Mali, Prashant; Church, George M Nature methods 27918539 2017 Feb
Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo. Suk, Ho-Jun; van Welie, Ingrid; Kodandaramaiah, Suhasa B; Allen, Brian; Forest, Craig R; Boyden, Edward S Neuron 28858614 2017 Aug 30
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Composite Hydrogels with Engineered Microdomains for Optical Glucose Sensing at Low Oxygen Conditions. Bornhoeft, Lindsey R; Biswas, Aniket; McShane, Michael J Biosensors 28117762 2017 Jan 22
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