NIH Director's Transformative Research Award
NIH Director's Transformative Research Award
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Authors | Journal | PubMedID | Publication Date |
|---|---|---|---|---|
| The African Turquoise Killifish: A Scalable Vertebrate Model for Aging and Other Complex Phenotypes. | Boos, Felix; Chen, Jingxun; Brunet, Anne | Cold Spring Harbor protocols | 37100468 | 2024 Mar 01 |
| D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response. | Jiang, Jialong; Chen, Sisi; Tsou, Tiffany; McGinnis, Christopher S; Khazaei, Tahmineh; Zhu, Qin; Park, Jong H; Strazhnik, Inna-Marie; Vielmetter, Jost; Gong, Yingying; Hanna, John; Chow, Eric D; Sivak, David A; Gartner, Zev J; Thomson, Matt | bioRxiv : the preprint server for biology | 37131803 | 2024 Jun 04 |
| Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids. | Haloi, Nandan; Huang, Shan; Nichols, Aaron L; Fine, Eve J; Friesenhahn, Nicholas J; Marotta, Christopher B; Dougherty, Dennis A; Lindahl, Erik; Howard, Rebecca J; Mayo, Stephen L; Lester, Henry A | bioRxiv : the preprint server for biology | 36712031 | 2024 Jan 18 |
| Fusobacterium sphaericum sp. nov. , isolated from a human colon tumor, adheres to colonic epithelial cells and induces IL-8 secretion. | Zepeda-Rivera, Martha A; Eisele, Yannick; Baryiames, Alexander; Wu, Hanrui; Mengoni, Claudia; Piccinno, Gianmarco; McMahon, Elsa F; LaCourse, Kaitlyn D; Jones, Dakota S; Hauner, Hans; Minot, Samuel S; Segata, Nicola; Dewhirst, Floyd E; Johnston, Christopher D; Bullman, Susan | bioRxiv : the preprint server for biology | 37398369 | 2024 Aug 28 |
| Early-onset Colon Cancer Shows a Distinct Intestinal Microbiome and a Host-Microbe Interaction. | Adnan, Darbaz; Trinh, Jonathan Q; Sharma, Deepak; Alsayid, Muhammad; Bishehsari, Faraz | Cancer prevention research (Philadelphia, Pa.) | 37967575 | 2024 Jan 04 |
| Multifaceted impact of specialized neuropeptide-intensive neurons on the selective vulnerability in Alzheimer's disease. | Li, Manci; Flack, Nichole; Larsen, Peter A | bioRxiv : the preprint server for biology | 38014130 | 2024 Apr 22 |
| Environmental risk scores of persistent organic pollutants associate with higher ALS risk and shorter survival in a new Michigan case/control cohort. | Goutman, Stephen A; Boss, Jonathan; Jang, Dae-Gyu; Mukherjee, Bhramar; Richardson, Rudy J; Batterman, Stuart; Feldman, Eva L | Journal of neurology, neurosurgery, and psychiatry | 37758454 | 2024 Feb 14 |
| NOVA1 acts as an oncogenic RNA-binding protein to regulate cholesterol homeostasis in human glioblastoma cells. | Saito, Yuhki; Yang, Yanhong; Saito, Misa; Park, Christopher Y; Funato, Kosuke; Tabar, Viviane; Darnell, Robert B | Proceedings of the National Academy of Sciences of the United States of America | 38416679 | 2024 Mar 05 |
| Multisensory gamma stimulation promotes glymphatic clearance of amyloid. | Murdock, Mitchell H; Yang, Cheng-Yi; Sun, Na; Pao, Ping-Chieh; Blanco-Duque, Cristina; Kahn, Martin C; Kim, TaeHyun; Lavoie, Nicolas S; Victor, Matheus B; Islam, Md Rezaul; Galiana, Fabiola; Leary, Noelle; Wang, Sidney; Bubnys, Adele; Ma, Emily; Akay, Leyla A; Sneve, Madison; Qian, Yong; Lai, Cuixin; McCarthy, Michelle M; Kopell, Nancy; Kellis, Manolis; Piatkevich, Kiryl D; Boyden, Edward S; Tsai, Li-Huei | Nature | 38418876 | 2024 Mar |
| Chikungunya virus infection disrupts lymph node lymphatic endothelial cell composition and function via MARCO. | Lucas, Cormac J; Sheridan, Ryan M; Reynoso, Glennys V; Davenport, Bennett J; McCarthy, Mary K; Martin, Aspen; Hesselberth, Jay R; Hickman, Heather D; Tamburini, Beth Aj; Morrison, Thomas E | JCI insight | 38194268 | 2024 Jan 09 |
| piOxi database: a web resource of germline and somatic tissue piRNAs identified by chemical oxidation. | Wang, Kai; Perera, Bambarendage P U; Morgan, Rachel K; Sala-Hamrick, Kimberley; Geron, Viviana; Svoboda, Laurie K; Faulk, Christopher; Dolinoy, Dana C; Sartor, Maureen A | Database : the journal of biological databases and curation | 38204359 | 2024 Jan 10 |
| SARS-CoV-2 papain-like protease activates nociceptors to drive sneeze and pain. | Mali, Sonali S; Silva, Ricardo; Gong, Zhongyan; Cronce, Michael; Vo, Uyen; Vuong, Cliff; Moayedi, Yalda; Cox, Jeffery S; Bautista, Diana M | bioRxiv : the preprint server for biology | 38260476 | 2024 Jan 11 |
| PNMA2 forms immunogenic non-enveloped virus-like capsids associated with paraneoplastic neurological syndrome. | Xu, Junjie; Erlendsson, Simon; Singh, Manvendra; Holling, G Aaron; Regier, Matthew; Ibiricu, Iosune; Einstein, Jenifer; Hantak, Michael P; Day, Gregory S; Piquet, Amanda L; Smith, Tammy L; Clardy, Stacey L; Whiteley, Alexandra M; Feschotte, Cédric; Briggs, John A G; Shepherd, Jason D | Cell | 38301645 | 2024 Feb 15 |
| A modified Michaelis-Menten equation estimates growth from birth to 3 years in healthy babies in the USA. | Walters, William A; Ley, Catherine; Hastie, Trevor; Ley, Ruth E; Parsonnet, Julie | BMC medical research methodology | 38302887 | 2024 Feb 01 |
| Guidelines for releasing a variant effect predictor. | Livesey, Benjamin J; Badonyi, Mihaly; Dias, Mafalda; Frazer, Jonathan; Kumar, Sushant; Lindorff-Larsen, Kresten; McCandlish, David M; Orenbuch, Rose; Shearer, Courtney A; Muffley, Lara; Foreman, Julia; Glazer, Andrew M; Lehner, Ben; Marks, Debora S; Roth, Frederick P; Rubin, Alan F; Starita, Lea M; Marsh, Joseph A | ArXiv | 38699161 | 2024 Apr 16 |
| Caenorhabditis elegans Dicer acts with the RIG-I-like helicase DRH-1 and RDE-4 to cleave dsRNA. | Consalvo, Claudia D; Aderounmu, Adedeji M; Donelick, Helen M; Aruscavage, P Joseph; Eckert, Debra M; Shen, Peter S; Bass, Brenda L | eLife | 38747717 | 2024 May 15 |
| The hidden fitness of the male zebra finch courtship song. | Alam, Danyal; Zia, Fayha; Roberts, Todd F | Nature | 38509376 | 2024 Apr |
| Single-cell dissection of the human motor and prefrontal cortices in ALS and FTLD. | Pineda, S Sebastian; Lee, Hyeseung; Ulloa-Navas, Maria J; Linville, Raleigh M; Garcia, Francisco J; Galani, Kyriakitsa; Engelberg-Cook, Erica; Castanedes, Monica C; Fitzwalter, Brent E; Pregent, Luc J; Gardashli, Mahammad E; DeTure, Michael; Vera-Garcia, Diana V; Hucke, Andre T S; Oskarsson, Bjorn E; Murray, Melissa E; Dickson, Dennis W; Heiman, Myriam; Belzil, Veronique V; Kellis, Manolis | Cell | 38521060 | 2024 Apr 11 |
| A natural bacterial pathogen of C. elegans uses a small RNA to induce transgenerational inheritance of learned avoidance. | Sengupta, Titas; St Ange, Jonathan; Kaletsky, Rachel; Moore, Rebecca S; Seto, Renee J; Marogi, Jacob; Myhrvold, Cameron; Gitai, Zemer; Murphy, Coleen T | PLoS genetics | 38547071 | 2024 Mar |
| Human brain small extracellular vesicles contain selectively packaged, full-length mRNA. | Ransom, Linnea S; Liu, Christine S; Dunsmore, Emily; Palmer, Carter R; Nicodemus, Juliet; Ziomek, Derya; Williams, Nyssa; Chun, Jerold | Cell reports | 38578831 | 2024 Apr 23 |
| Macromolecular interactions and geometrical confinement determine the 3D diffusion of ribosome-sized particles in live Escherichia coli cells. | Valverde-Mendez, Diana; Sunol, Alp M; Bratton, Benjamin P; Delarue, Morgan; Hofmann, Jennifer L; Sheehan, Joseph P; Gitai, Zemer; Holt, Liam J; Shaevitz, Joshua W; Zia, Roseanna N | bioRxiv : the preprint server for biology | 38585850 | 2024 Mar 28 |
| Deconvolution of polygenic risk score in single cells unravels cellular and molecular heterogeneity of complex human diseases. | Zhang, Sai; Shu, Hantao; Zhou, Jingtian; Rubin-Sigler, Jasper; Yang, Xiaoyu; Liu, Yuxi; Cooper-Knock, Johnathan; Monte, Emma; Zhu, Chenchen; Tu, Sharon; Li, Han; Tong, Mingming; Ecker, Joseph R; Ichida, Justin K; Shen, Yin; Zeng, Jianyang; Tsao, Philip S; Snyder, Michael P | bioRxiv : the preprint server for biology | 38798507 | 2024 May 14 |
| Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. | Wernersson, Erik; Gelali, Eleni; Girelli, Gabriele; Wang, Su; Castillo, David; Mattsson Langseth, Christoffer; Verron, Quentin; Nguyen, Huy Q; Chattoraj, Shyamtanu; Martinez Casals, Anna; Blom, Hans; Lundberg, Emma; Nilsson, Mats; Marti-Renom, Marc A; Wu, Chao-Ting; Crosetto, Nicola; Bienko, Magda | Nature methods | 38844629 | 2024 Jul |
| Amygdala TDP-43 pathology is associated with behavioural dysfunction and ferritin accumulation in amyotrophic lateral sclerosis. | Rifai, Olivia M; Waldron, Fergal M; O'Shaughnessy, Judi; Read, Fiona L; Gilodi, Martina; Pastore, Annalisa; Shneider, Neil; Tartaglia, Gian Gaetano; Zacco, Elsa; Spence, Holly; Gregory, Jenna M | bioRxiv : the preprint server for biology | 38854008 | 2024 Jun 01 |
| APACE: AlphaFold2 and advanced computing as a service for accelerated discovery in biophysics. | Park, Hyun; Patel, Parth; Haas, Roland; Huerta, E A | Proceedings of the National Academy of Sciences of the United States of America | 38913887 | 2024 Jul 02 |
| Improving prediction models of amyotrophic lateral sclerosis (ALS) using polygenic, pre-existing conditions, and survey-based risk scores in the UK Biobank. | Jin, Weijia; Boss, Jonathan; Bakulski, Kelly M; Goutman, Stephen A; Feldman, Eva L; Fritsche, Lars G; Mukherjee, Bhramar | Journal of neurology | 39249108 | 2024 Sep 09 |
| Identification of Novel GANT61 Analogs with Activity in Hedgehog Functional Assays and GLI1-Dependent Cancer Cells. | Abu Rabe, Dina; Chdid, Lhoucine; Lamson, David R; Laudeman, Christopher P; Tarpley, Michael; Elsayed, Naglaa; Smith, Ginger R; Zheng, Weifan; Dixon, Maria S; Williams, Kevin P | Molecules (Basel, Switzerland) | 38999049 | 2024 Jun 28 |
| National Trends in Suicide Among Asian American or Pacific Islander Youth. | Keum, Brian TaeHyuk; Oh, Seungbin; Sheftall, Arielle H | JAMA network open | 39052296 | 2024 Jul 01 |
| AP-1 Mediates Cellular Adaptation and Memory Formation During Therapy Resistance. | Li, Jingxin; Ravindran, Pavithran T; O'Farrell, Aoife; Busch, Gianna T; Boe, Ryan H; Niu, Zijian; Woo, Sean; Dunagin, Margaret C; Jain, Naveen; Goyal, Yogesh; Sarma, Kavitha; Herlyn, Meenhard; Raj, Arjun | bioRxiv : the preprint server for biology | 39091739 | 2024 Jul 25 |
| Quantitative PET imaging and modeling of molecular blood-brain barrier permeability. | Chung, Kevin J; Abdelhafez, Yasser G; Spencer, Benjamin A; Jones, Terry; Tran, Quyen; Nardo, Lorenzo; Chen Jr, Moon S; Sarkar, Souvik; Medici, Valentina; Lyo, Victoria; Badawi, Ramsey D; Cherry, Simon R; Wang, Guobao | medRxiv : the preprint server for health sciences | 39108503 | 2024 Jul 27 |
| Impaired neural stress resistance and loss of REST in bipolar disorder. | Meyer, Katharina; Ling, King-Hwa; Yeo, Pei-Ling; Spathopoulou, Angeliki; Drake, Derek; Choi, Jaejoon; Aron, Liviu; Garcia-Corral, Mariana; Ko, Tak; Lee, Eunjung Alice; Tam, Jenny M; Perlis, Roy H; Church, George M; Tsai, Li-Huei; Yankner, Bruce A | Molecular psychiatry | 37938767 | 2024 Jan |
| A microglia clonal inflammatory disorder in Alzheimer's Disease. | Vicario, Rocio; Fragkogianni, Stamatina; Weber, Leslie; Lazarov, Tomi; Hu, Yang; Hayashi, Samantha Y; Craddock, Barbara P; Socci, Nicholas D; Alberdi, Araitz; Baako, Ann; Ay, Oyku; Ogishi, Masato; Lopez-Rodrigo, Estibaliz; Kappagantula, Rajya; Viale, Agnes; Iacobuzio-Donahue, Christine A; Zhou, Ting; Ransohoff, Richard M; Chesworth, Richard; Netherlands Brain Bank; Abdel-Wahab, Omar; Boisson, Bertrand; Elemento, Olivier; Casanova, Jean-Laurent; Miller, W Todd; Geissmann, Frederic | bioRxiv : the preprint server for biology | 38328106 | 2024 Aug 03 |
| The carboxy terminus causes interfacial assembly of oleate hydratase on a membrane bilayer. | Radka, Christopher D; Grace, Christy R; Hasdemir, Hale S; Li, Yupeng; Rodriguez, Carlos C; Rodrigues, Patrick; Oldham, Michael L; Qayyum, M Zuhaib; Pitre, Aaron; MacCain, William J; Kalathur, Ravi C; Tajkhorshid, Emad; Rock, Charles O | The Journal of biological chemistry | 38211817 | 2024 Feb |
| Causality-enriched epigenetic age uncouples damage and adaptation. | Ying, Kejun; Liu, Hanna; Tarkhov, Andrei E; Sadler, Marie C; Lu, Ake T; Moqri, Mahdi; Horvath, Steve; Kutalik, Zoltán; Shen, Xia; Gladyshev, Vadim N | Nature aging | 38243142 | 2024 Feb |
| Optimization-derived blood input function using a kernel method and its evaluation with total-body PET for brain parametric imaging. | Zhu, Yansong; Tran, Quyen; Wang, Yiran; Badawi, Ramsey D; Cherry, Simon R; Qi, Jinyi; Abbaszadeh, Shiva; Wang, Guobao | NeuroImage | 38643890 | 2024 Jun |
| Nucleoside Reverse Transcriptase Inhibitor Exposure Is Associated with Lower Alzheimer's Disease Risk: A Retrospective Cohort Proof-of-Concept Study. | Chow, Tiffany W; Raupp, Mark; Reynolds, Matthew W; Li, Siying; Kaeser, Gwendolyn E; Chun, Jerold | Pharmaceuticals (Basel, Switzerland) | 38675371 | 2024 Mar 22 |
| Rapidly inducible yeast surface display for antibody evolution with OrthoRep. | Paulk, Alexandra M; Williams, Rory L; Liu, Chang C | bioRxiv : the preprint server for biology | 38826191 | 2024 May 24 |
| Pseudomonas fluorescens 15 small RNA Pfs1 mediates transgenerational epigenetic inheritance of pathogen avoidance in C. elegans through the Ephrin receptor VAB-1. | Seto, Renee; Brown, Rachel; Kaletsky, Rachel; Parsons, Lance R; Moore, Rebecca S; Murphy, Coleen T | bioRxiv : the preprint server for biology | 38826453 | 2024 May 23 |
| Cloud-based serverless computing enables accelerated monte carlo simulations for nuclear medicine imaging. | Bayerlein, Reimund; Swarnakar, Vivek; Selfridge, Aaron; Spencer, Benjamin A; Nardo, Lorenzo; Badawi, Ramsey D | Biomedical physics & engineering express | 38876087 | 2024 Jun 25 |
| High-dimensional multi-pass flow cytometry via spectrally encoded cellular barcoding. | Kwok, Sheldon J J; Forward, Sarah; Fahlberg, Marissa D; Assita, Emane Rose; Cosgriff, Sean; Lee, Seung Hyung; Abbott, Geoffrey R; Zhu, Han; Minasian, Nicolas H; Vote, A Sean; Martino, Nicola; Yun, Seok-Hyun | Nature biomedical engineering | 38036616 | 2024 Mar |
| Catalytic Protein Inhibitors. | Kodadek, Thomas | Angewandte Chemie (International ed. in English) | 38064411 | 2024 Mar 11 |
| Bacteroidota inhibit microglia clearance of amyloid-beta and promote plaque deposition in Alzheimer's disease mouse models. | Wasén, Caroline; Beauchamp, Leah C; Vincentini, Julia; Li, Shuqi; LeServe, Danielle S; Gauthier, Christian; Lopes, Juliana R; Moreira, Thais G; Ekwudo, Millicent N; Yin, Zhuoran; da Silva, Patrick; Krishnan, Rajesh K; Butovsky, Oleg; Cox, Laura M; Weiner, Howard L | Nature communications | 38719797 | 2024 May 08 |
| Genome organization around nuclear speckles drives mRNA splicing efficiency. | Bhat, Prashant; Chow, Amy; Emert, Benjamin; Ettlin, Olivia; Quinodoz, Sofia A; Strehle, Mackenzie; Takei, Yodai; Burr, Alex; Goronzy, Isabel N; Chen, Allen W; Huang, Wesley; Ferrer, Jose Lorenzo M; Soehalim, Elizabeth; Goh, Say-Tar; Chari, Tara; Sullivan, Delaney K; Blanco, Mario R; Guttman, Mitchell | Nature | 38720076 | 2024 May |
| Antibodies expand the scope of angiotensin receptor pharmacology. | Skiba, Meredith A; Sterling, Sarah M; Rawson, Shaun; Zhang, Shuhao; Xu, Huixin; Jiang, Haoran; Nemeth, Genevieve R; Gilman, Morgan S A; Hurley, Joseph D; Shen, Pengxiang; Staus, Dean P; Kim, Jihee; McMahon, Conor; Lehtinen, Maria K; Rockman, Howard A; Barth, Patrick; Wingler, Laura M; Kruse, Andrew C | Nature chemical biology | 38744986 | 2024 May 14 |
| Aptamer Technologies in Neuroscience, Neuro-Diagnostics and Neuro-Medicine Development. | Wang, Bang; Kobeissy, Firas; Golpich, Mojtaba; Cai, Guangzheng; Li, Xiaowei; Abedi, Reem; Haskins, William; Tan, Weihong; Benner, Steven A; Wang, Kevin K W | Molecules (Basel, Switzerland) | 38474636 | 2024 Mar 02 |
| A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche. | Zepeda-Rivera, Martha; Minot, Samuel S; Bouzek, Heather; Wu, Hanrui; Blanco-Míguez, Aitor; Manghi, Paolo; Jones, Dakota S; LaCourse, Kaitlyn D; Wu, Ying; McMahon, Elsa F; Park, Soon-Nang; Lim, Yun K; Kempchinsky, Andrew G; Willis, Amy D; Cotton, Sean L; Yost, Susan C; Sicinska, Ewa; Kook, Joong-Ki; Dewhirst, Floyd E; Segata, Nicola; Bullman, Susan; Johnston, Christopher D | Nature | 38509359 | 2024 Apr |
| Immunization-induced antigen archiving enhances local memory CD8+ T cell responses following an unrelated viral infection. | Doan, Thu A; Forward, Tadg S; Schafer, Johnathon B; Lucas, Erin D; Fleming, Ira; Uecker-Martin, Aspen; Ayala, Edgardo; Guthmiller, Jenna J; Hesselberth, Jay R; Morrison, Thomas E; Tamburini, Beth A Jirón | NPJ vaccines | 38514656 | 2024 Mar 21 |
| A torpor-like state (TLS) in mice slows blood epigenetic aging and prolongs healthspan. | Jayne, Lorna; Lavin-Peter, Aurora; Roessler, Julian; Tyshkovskiy, Alexander; Antoszewski, Mateusz; Ren, Erika; Markovski, Aleksandar; Sun, Senmiao; Yao, Hanqi; Sankaran, Vijay G; Gladyshev, Vadim N; Brooke, Robert T; Horvath, Steve; Griffith, Eric C; Hrvatin, Sinisa | bioRxiv : the preprint server for biology | 38585858 | 2024 Mar 25 |
| Clinicopathological analysis of NEK1 variants in amyotrophic lateral sclerosis. | Rifai, Olivia M; Waldron, Fergal M; Sleibi, Danah; O'Shaughnessy, Judi; Leighton, Danielle J; Gregory, Jenna M | Brain pathology (Zurich, Switzerland) | 38986433 | 2024 Jul 10 |
| Astrocytic Neuroligin-3 influences gene expression and social behavior, but is dispensable for synapse number. | Qin, Liming; Liu, Zhili; Guo, Sile; Han, Ying; Wang, Xiankun; Ren, Wen; Chen, Jiewen; Zhen, Hefu; Nie, Chao; Xing, Ke-Ke; Chen, Tao; Südhof, Thomas C; Sun, Yuzhe; Zhang, Bo | Molecular psychiatry | 39003414 | 2024 Jul 13 |
| Spatial transcriptomics reveals influence of microenvironment on intrinsic fates in melanoma therapy resistance. | Boe, Ryan H; Triandafillou, Catherine G; Lazcano, Rossana; Wargo, Jennifer A; Raj, Arjun | bioRxiv : the preprint server for biology | 39005406 | 2024 Jul 02 |
| Single-cell multiregion dissection of Alzheimer's disease. | Mathys, Hansruedi; Boix, Carles A; Akay, Leyla Anne; Xia, Ziting; Davila-Velderrain, Jose; Ng, Ayesha P; Jiang, Xueqiao; Abdelhady, Ghada; Galani, Kyriaki; Mantero, Julio; Band, Neil; James, Benjamin T; Babu, Sudhagar; Galiana-Melendez, Fabiola; Louderback, Kate; Prokopenko, Dmitry; Tanzi, Rudolph E; Bennett, David A; Tsai, Li-Huei; Kellis, Manolis | Nature | 39048816 | 2024 Aug |
| In situ deposition of nanobodies by an engineered commensal microbe promotes survival in a mouse model of enterohemorrhagic E. coli. | Srivastava, Rajkamal; González-Prieto, Coral; Lynch, Jason P; Muscolo, Michele; Lin, Catherine Y; Brown, Markus A; Lemos, Luisa; Shrestha, Anishma; Osburne, Marcia S; Leong, John M; Lesser, Cammie F | bioRxiv : the preprint server for biology | 39131305 | 2024 Jul 30 |
| Mechanism of neurodegeneration mediated by clonal inflammatory microglia. | Vicario, Rocio; Fragkogianni, Stamatina; Pokrovskii, Maria; Mayer, Carina; Lopez-Rodrigo, Estibaliz; Hu, Yang; Ogishi, Masato; Alberdi, Araitz; Baako, Ann; Ay, Oyku; Plu, Isabelle; Sazdovitch, Véronique; Heritier, Sebastien; Cohen-Aubart, Fleur; Shor, Natalia; Miyara, Makoto; Nguyen-Khac, Florence; Viale, Agnes; Idbaih, Ahmed; Amoura, Zahir; Rosenblum, Marc K; Zhang, Haochen; Karnoub, Elias-Ramzey; Sashittal, Palash; Jakatdar, Akhil; Iacobuzio-Donahue, Christine A; Abdel-Wahab, Omar; Tabar, Viviane; Socci, Nicholas D; Elemento, Olivier; Diamond, Eli L; Boisson, Bertrand; Casanova, Jean-Laurent; Seilhean, Danielle; Haroche, Julien; Donadieu, Jean; Geissmann, Frederic | bioRxiv : the preprint server for biology | 39131366 | 2024 Jul 31 |
| Overcoming fixation and permeabilization challenges in flow cytometry by optical barcoding and multi-pass acquisition. | Fahlberg, Marissa D; Forward, Sarah; Assita, Emane Rose; Mazzola, Michael; Kiem, Anna; Handley, Maris; Yun, Seok-Hyun; Kwok, Sheldon J J | bioRxiv : the preprint server for biology | 39185194 | 2024 Aug 16 |
| Traumatic Brain Injury-Induced Fear Generalization in Mice Involves Hippocampal Memory Trace Dysfunction and Is Alleviated by (R,S)-Ketamine. | McGowan, Josephine C; Ladner, Liliana R; Shubeck, Claire X; Tapia, Juliana; LaGamma, Christina T; Anqueira-González, Amanda; DeFrancesco, Ariana; Chen, Briana K; Hunsberger, Holly C; Sydnor, Ezra J; Logan, Ryan W; Yu, Tzong-Shiue; Kernie, Steven G; Denny, Christine A | Biological psychiatry | 37423591 | 2024 Jan 01 |
| Focal adhesion is associated with lithium response in bipolar disorder: evidence from a network-based multi-omics analysis. | Niemsiri, Vipavee; Rosenthal, Sara Brin; Nievergelt, Caroline M; Maihofer, Adam X; Marchetto, Maria C; Santos, Renata; Shekhtman, Tatyana; Alliey-Rodriguez, Ney; Anand, Amit; Balaraman, Yokesh; Berrettini, Wade H; Bertram, Holli; Burdick, Katherine E; Calabrese, Joseph R; Calkin, Cynthia V; Conroy, Carla; Coryell, William H; DeModena, Anna; Eyler, Lisa T; Feeder, Scott; Fisher, Carrie; Frazier, Nicole; Frye, Mark A; Gao, Keming; Garnham, Julie; Gershon, Elliot S; Goes, Fernando S; Goto, Toyomi; Harrington, Gloria J; Jakobsen, Petter; Kamali, Masoud; Kelly, Marisa; Leckband, Susan G; Lohoff, Falk W; McCarthy, Michael J; McInnis, Melvin G; Craig, David; Millett, Caitlin E; Mondimore, Francis; Morken, Gunnar; Nurnberger, John I; Donovan, Claire O'; Øedegaard, Ketil J; Ryan, Kelly; Schinagle, Martha; Shilling, Paul D; Slaney, Claire; Stapp, Emma K; Stautland, Andrea; Tarwater, Bruce; Zandi, Peter P; Alda, Martin; Fisch, Kathleen M; Gage, Fred H; Kelsoe, John R | Molecular psychiatry | 36991131 | 2024 Jan |
| Mapping of neuronal and glial primary cilia contactome and connectome in the human cerebral cortex. | Wu, Jun Yao; Cho, Su-Ji; Descant, Katherine; Li, Peter H; Shapson-Coe, Alexander; Januszewski, Michal; Berger, Daniel R; Meyer, Cailyn; Casingal, Cristine; Huda, Ariba; Liu, Jiaqi; Ghashghaei, Tina; Brenman, Mikayla; Jiang, Michelle; Scarborough, Joseph; Pope, Art; Jain, Viren; Stein, Jason L; Guo, Jiami; Yasuda, Ryohei; Lichtman, Jeff W; Anton, E S | Neuron | 37898123 | 2024 Jan 03 |
| Protein design using structure-based residue preferences. | Ding, David; Shaw, Ada Y; Sinai, Sam; Rollins, Nathan; Prywes, Noam; Savage, David F; Laub, Michael T; Marks, Debora S | Nature communications | 38388493 | 2024 Feb 22 |
| Phosphatidylthreonine is a procoagulant lipid detected in human blood and elevated in coronary artery disease. | Hajeyah, Ali A; Protty, Majd B; Paul, Divyani; Costa, Daniela; Omidvar, Nader; Morgan, Bethan; Iwasaki, Yugo; McGill, Beth; Jenkins, P Vincent; Yousef, Zaheer; Allen-Redpath, Keith; Soyama, Shin; Choudhury, Anirban; Mitra, Rito; Yaqoob, Parveen; Morrissey, James H; Collins, Peter W; O'Donnell, Valerie B | Journal of lipid research | 38103786 | 2024 Jan |
| The competitive landscape of the dsRNA world. | Cottrell, Kyle A; Andrews, Ryan J; Bass, Brenda L | Molecular cell | 38118451 | 2024 Jan 04 |
| Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids. | Haloi, Nandan; Huang, Shan; Nichols, Aaron L; Fine, Eve J; Friesenhahn, Nicholas J; Marotta, Christopher B; Dougherty, Dennis A; Lindahl, Erik; Howard, Rebecca J; Mayo, Stephen L; Lester, Henry A | Protein engineering, design & selection : PEDS | 38302088 | 2024 Jan 29 |
| Alterations in performance and discriminating power of the death/suicide implicit association test across the lifespan. | Ruch, Donna A; Bridge, Jeffrey A; Tissue, Jaclyn; Madden, Sean P; Galfavy, Hanga; Gorlyn, Marianne; Sheftall, Arielle H; Szanto, Katalin; Keilp, John G | Psychiatry research | 38492262 | 2024 May |
| Identification of protein aggregates in the aging vertebrate brain with prion-like and phase-separation properties. | Harel, Itamar; Chen, Yiwen R; Ziv, Inbal; Singh, Param Priya; Heinzer, Daniel; Navarro Negredo, Paloma; Goshtchevsky, Uri; Wang, Wei; Astre, Gwendoline; Moses, Eitan; McKay, Andrew; Machado, Ben E; Hebestreit, Katja; Yin, Sifei; Sánchez Alvarado, Alejandro; Jarosz, Daniel F; Brunet, Anne | Cell reports | 38810650 | 2024 Jun 25 |
| Tissue-specific landscape of protein aggregation and quality control in an aging vertebrate. | Chen, Yiwen R; Harel, Itamar; Singh, Param Priya; Ziv, Inbal; Moses, Eitan; Goshtchevsky, Uri; Machado, Ben E; Brunet, Anne; Jarosz, Daniel F | Developmental cell | 38810654 | 2024 Jul 22 |
| Preteen Suicide Risk Screening in the Pediatric Outpatient Setting: A Clinical Pathway. | Hennefield, Laura; Denton, Ellen-Ge; Chen, Peggy G; Sheftall, Arielle H; Ayer, Lynsay | Journal of the Academy of Consultation-Liaison Psychiatry | 38908827 | 2024 Jun 21 |
| Bayesian semiparametric Markov renewal mixed models for vocalization syntax. | Wu, Yutong; Jarvis, Erich D; Sarkar, Abhra | Biostatistics (Oxford, England) | 36583955 | 2024 Jul 01 |
| Stem cell transcriptional profiles from mouse subspecies reveal cis -regulatory evolution at translation genes. | Simon, Noah M; Kim, Yujin; Bautista, Diana M; Dutton, James R; Brem, Rachel B | bioRxiv : the preprint server for biology | 37503246 | 2024 Jul 20 |
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| A transient wave of BMP signaling in the retina is necessary for Müller glial differentiation. | Ueki, Yumi; Wilken, Matthew S; Cox, Kristen E; Chipman, Laura B; Bermingham-McDonogh, Olivia; Reh, Thomas A | Development (Cambridge, England). | 25605781 | 2015 Feb 1; |
| Enhancer-bound LDB1 regulates a corticotrope promoter-pausing repression program. | Zhang, Feng; Tanasa, Bogdan; Merkurjev, Daria; Lin, Chijen; Song, Xiaoyuan; Li, Wenbo; Tan, Yuliang; Liu, Zhijie; Zhang, Jie; Ohgi, Kenneth A; Krones, Anna; Skowronska-Krawczyk, Dorota; Rosenfeld, Michael G | Proceedings of the National Academy of Sciences of the United States of America. | 25605944 | 2015 Feb 3; |
| Enhancer sequence variants and transcription-factor deregulation synergize to construct pathogenic regulatory circuits in B-cell lymphoma. | Koues, Olivia I; Kowalewski, Rodney A; Chang, Li-Wei; Pyfrom, Sarah C; Schmidt, Jennifer A; Luo, Hong; Sandoval, Luis E; Hughes, Tyler B; Bednarski, Jeffrey J; Cashen, Amanda F; Payton, Jacqueline E; Oltz, Eugene M | Immunity. | 25607463 | 2015 Jan 20; |
| Diversity of transgenic mouse models for selective targeting of midbrain dopamine neurons. | Lammel, Stephan; Steinberg, Elizabeth E; Földy, Csaba; Wall, Nicholas R; Beier, Kevin; Luo, Liqun; Malenka, Robert C | Neuron. | 25611513 | 2015 Jan 21; |
| In vivo deep brain imaging of rats using oral-cavity illuminated photoacoustic computed tomography. | Lin, Li; Xia, Jun; Wong, Terence T W; Li, Lei; Wang, Lihong V | Journal of biomedical optics. | 25611865 | 2015 Jan; |
| Near-atomic resolution structure of the largest known Ca(2+) channel: ryanodine receptor. | Wang, LiGuo | Science China. Life sciences. | 25614031 | 2015 Feb; |
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| Chronic subordination stress induces hyperphagia and disrupts eating behavior in mice modeling binge-eating-like disorder. | Razzoli, Maria; Sanghez, Valentina; Bartolomucci, Alessandro | Frontiers in nutrition. | 25621284 | 2015; |
| Myosin II controls cellular branching morphogenesis and migration in three dimensions by minimizing cell-surface curvature. | Elliott, Hunter; Fischer, Robert S; Myers, Kenneth A; Desai, Ravi A; Gao, Lin; Chen, Christopher S; Adelstein, Robert S; Waterman, Clare M; Danuser, Gaudenz | Nature cell biology. | 25621949 | 2015 Feb; |
| Platelet-derived SDF-1 primes the pulmonary capillary vascular niche to drive lung alveolar regeneration. | Rafii, Shahin; Cao, Zhongwei; Lis, Raphael; Siempos, Ilias I; Chavez, Deebly; Shido, Koji; Rabbany, Sina Y; Ding, Bi-Sen | Nature cell biology. | 25621952 | 2015 Feb; |
| Physical chemistry of nanomedicine: understanding the complex behaviors of nanoparticles in vivo. | Lane, Lucas A; Qian, Ximei; Smith, Andrew M; Nie, Shuming | Annual review of physical chemistry. | 25622189 | 2015 Apr; |
| Direct inhibition of oncogenic KRAS by hydrocarbon-stapled SOS1 helices. | Leshchiner, Elizaveta S; Parkhitko, Andrey; Bird, Gregory H; Luccarelli, James; Bellairs, Joseph A; Escudero, Silvia; Opoku-Nsiah, Kwadwo; Godes, Marina; Perrimon, Norbert; Walensky, Loren D | Proceedings of the National Academy of Sciences of the United States of America. | 25624485 | 2015 Feb 10; |
| Mitophagy confers resistance to siderophore-mediated killing by Pseudomonas aeruginosa. | Kirienko, Natalia V; Ausubel, Frederick M; Ruvkun, Gary | Proceedings of the National Academy of Sciences of the United States of America. | 25624506 | 2015 Feb 10; |
| Microglia constitute a barrier that prevents neurotoxic protofibrillar A?42 hotspots around plaques. | Condello, Carlo; Yuan, Peng; Schain, Aaron; Grutzendler, Jaime | Nature communications. | 25630253 | 2015; |
| Visualizing hypothalamic network dynamics for appetitive and consummatory behaviors. | Jennings, Joshua H; Ung, Randall L; Resendez, Shanna L; Stamatakis, Alice M; Taylor, Johnathon G; Huang, Jonathan; Veleta, Katie; Kantak, Pranish A; Aita, Megumi; Shilling-Scrivo, Kelson; Ramakrishnan, Charu; Deisseroth, Karl; Otte, Stephani; Stuber, Garret D | Cell. | 25635459 | 2015 Jan 29; |
| Nonapoptotic and extracellular activity of granzyme B mediates resistance to regulatory T cell (Treg) suppression by HLA-DR-CD25hiCD127lo Tregs in multiple sclerosis and in response to IL-6. | Bhela, Siddheshvar; Kempsell, Christine; Manohar, Monali; Dominguez-Villar, Margarita; Griffin, Russell; Bhatt, Pooja; Kivisakk-Webb, Pia; Fuhlbrigge, Robert; Kupper, Thomas; Weiner, Howard; Baecher-Allan, Clare | Journal of immunology (Baltimore, Md. : 1950). | 25637022 | 2015 Mar 1; |
| Phospho-BAD BH3 mimicry protects ? cells and restores functional ? cell mass in diabetes. | Ljubicic, Sanda; Polak, Klaudia; Fu, Accalia; Wiwczar, Jessica; Szlyk, Benjamin; Chang, Yigang; Alvarez-Perez, Juan C; Bird, Gregory H; Walensky, Loren D; Garcia-Ocaña, Adolfo; Danial, Nika N | Cell reports. | 25640178 | 2015 Feb 3; |
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| IL-4 abrogates T(H)17 cell-mediated inflammation by selective silencing of IL-23 in antigen-presenting cells. | Guenova, Emmanuella; Skabytska, Yuliya; Hoetzenecker, Wolfram; Weindl, Gunther; Sauer, Karin; Tham, Manuela; Kim, Kyu-Won; Park, Ji-Hyeon; Seo, Ji Hae; Ignatova, Desislava; Cozzio, Antonio; Levesque, Mitchell P; Volz, Thomas; Koberle, Martin; Kaesler, Susanne; Thomas, Peter; Mailhammer, Reinhard; Ghoreschi, Kamran; Schakel, Knut; Amarov, Boyko; Eichner, Martin; Schaller, Martin; Clark, Rachael A; Rocken, Martin; Biedermann, Tilo | Proceedings of the National Academy of Sciences of the United States of America. | 25646481 | 2015 Feb 17; |
| The lymph node as a new site for kidney organogenesis. | Francipane, Maria Giovanna; Lagasse, Eric | Stem cells translational medicine. | 25646529 | 2015 Mar; |
| The role of Abcb5 alleles in susceptibility to haloperidol-induced toxicity in mice and humans. | Zheng, Ming; Zhang, Haili; Dill, David L; Clark, J David; Tu, Susan; Yablonovitch, Arielle L; Tan, Meng How; Zhang, Rui; Rujescu, Dan; Wu, Manhong; Tessarollo, Lino; Vieira, Wilfred; Gottesman, Michael M; Deng, Suhua; Eberlin, Livia S; Zare, Richard N; Billard, Jean-Martin; Gillet, Jean-Pierre; Li, Jin Billy; Peltz, Gary | PLoS medicine. | 25647612 | 2015 Feb; |
| The human burst suppression electroencephalogram of deep hypothermia. | Brandon Westover, M; Ching, ShiNung; Kumaraswamy, Vishakhadatta M; Akeju, Oluwaseun; Pierce, Eric; Cash, Sydney S; Kilbride, Ronan; Brown, Emery N; Purdon, Patrick L | Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology. | 25649968 | 2015 Oct; |
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| Therapeutic genome editing: prospects and challenges. | Cox, David Benjamin Turitz; Platt, Randall Jeffrey; Zhang, Feng | Nature medicine. | 25654603 | 2015 Feb; |
| Direct evaluation of myocardial viability and stem cell engraftment demonstrates salvage of the injured myocardium. | Kim, Paul J; Mahmoudi, Morteza; Ge, Xiaohu; Matsuura, Yuka; Toma, Ildiko; Metzler, Scott; Kooreman, Nigel G; Ramunas, John; Holbrook, Colin; McConnell, Michael V; Blau, Helen; Harnish, Phillip; Rulifson, Eric; Yang, Phillip C | Circulation research. | 25654979 | 2015 Mar 27; |
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| Targeting the tumor vasculature to enhance T cell activity. | Lanitis, Evripidis; Irving, Melita; Coukos, George | Current opinion in immunology. | 25665467 | 2015 Apr; |
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| The effects of humanin and its analogues on male germ cell apoptosis induced by chemotherapeutic drugs. | Jia, Yue; Ohanyan, Aikoui; Lue, Yan-He; Swerdloff, Ronald S; Liu, Peter Y; Cohen, Pinchas; Wang, Christina | Apoptosis : an international journal on programmed cell death. | 25666707 | 2015 Apr; |
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| A rapid paper-based test for quantifying sickle hemoglobin in blood samples from patients with sickle cell disease. | Piety, Nathaniel Z; Yang, Xiaoxi; Lezzar, Dalia; George, Alex; Shevkoplyas, Sergey S | American journal of hematology. | 25689370 | 2015 Jun; |
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| Hypoxic preconditioning of mesenchymal stromal cells induces metabolic changes, enhances survival, and promotes cell retention in vivo. | Beegle, Julie; Lakatos, Kinga; Kalomoiris, Stefanos; Stewart, Heather; Isseroff, R Rivkah; Nolta, Jan A; Fierro, Fernando A | Stem cells (Dayton, Ohio). | 25702874 | 2015 Jun; |
| Identification, molecular cloning, and analysis of full-length hepatitis C virus transmitted/founder genotypes 1, 3, and 4. | Stoddard, Mark B; Li, Hui; Wang, Shuyi; Saeed, Mohsan; Andrus, Linda; Ding, Wenge; Jiang, Xinpei; Learn, Gerald H; von Schaewen, Markus; Wen, Jessica; Goepfert, Paul A; Hahn, Beatrice H; Ploss, Alexander; Rice, Charles M; Shaw, George M | mBio. | 25714714 | 2015; |
| The ferrous iron-responsive BqsRS two-component system activates genes that promote cationic stress tolerance. | Kreamer, Naomi N; Costa, Flavia; Newman, Dianne K | mBio. | 25714721 | 2015; |
| Deletion of ENTPD3 does not impair nucleotide hydrolysis in primary somatosensory neurons or spinal cord. | McCoy, Eric; Street, Sarah; Taylor-Blake, Bonnie; Yi, Jason; Edwards, Martin; Wightman, Mark; Zylka, Mark | F1000Research. | 25717362 | 2014; |
| A functional extracellular transcriptome in animals? Implications for biology, disease and medicine. | Tewari, Muneesh | Genome biology. | 25723626 | 2015 Feb 26; |
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| Integration of metabolic activation with a predictive toxicogenomics signature to classify genotoxic versus nongenotoxic chemicals in human TK6 cells. | Buick, Julie K; Moffat, Ivy; Williams, Andrew; Swartz, Carol D; Recio, Leslie; Hyduke, Daniel R; Li, Heng-Hong; Fornace Jr, Albert J; Aubrecht, Jiri; Yauk, Carole L | Environmental and molecular mutagenesis. | 25733247 | 2015 Jul; |
| Development of a toxicogenomics signature for genotoxicity using a dose-optimization and informatics strategy in human cells. | Li, Heng-Hong; Hyduke, Daniel R; Chen, Renxiang; Heard, Pamela; Yauk, Carole L; Aubrecht, Jiri; Fornace Jr, Albert J | Environmental and molecular mutagenesis. | 25733355 | 2015 Jul; |
| Central nervous system neuropeptide Y regulates mediators of hepatic phospholipid remodeling and very low-density lipoprotein triglyceride secretion via sympathetic innervation. | Rojas, Jennifer M; Bruinstroop, Eveline; Printz, Richard L; Alijagic-Boers, Aldijana; Foppen, Ewout; Turney, Maxine K; George, Leena; Beck-Sickinger, Annette G; Kalsbeek, Andries; Niswender, Kevin D | Molecular metabolism. | 25737956 | 2015 Mar; |
| The mitochondrial-derived peptide MOTS-c promotes metabolic homeostasis and reduces obesity and insulin resistance. | Lee, Changhan; Zeng, Jennifer; Drew, Brian G; Sallam, Tamer; Martin-Montalvo, Alejandro; Wan, Junxiang; Kim, Su-Jeong; Mehta, Hemal; Hevener, Andrea L; de Cabo, Rafael; Cohen, Pinchas | Cell metabolism. | 25738459 | 2015 Mar 03; |
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| Imaging Chronic Tuberculous Lesions Using Sodium [(18)F]Fluoride Positron Emission Tomography in Mice. | Ordonez, Alvaro A; DeMarco, Vincent P; Klunk, Mariah H; Pokkali, Supriya; Jain, Sanjay K | Molecular imaging and biology : MIB : the official publication of the Academy of Molecular Imaging. | 25750032 | 2015 Oct; |
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| Characterization of a Bivalent Vaccine Capable of Inducing Protection Against Both Ebola and Cross-clade H5N1 Influenza in Mice. | Wong, Gary; Qiu, Xiangguo; Ebihara, Hideki; Feldmann, Heinz; Kobinger, Gary P | The Journal of infectious diseases. | 26022441 | 2015 Oct 01; |
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| Near-infrared operating lamp for intraoperative molecular imaging of a mediastinal tumor. | Keating, Jane; Judy, Ryan; Newton, Andrew; Singhal, Sunil | BMC medical imaging | 26883511 | 2016 Feb 17 |
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| Mapping of Variable DNA Methylation Across Multiple Cell Types Defines a Dynamic Regulatory Landscape of the Human Genome. | Gu, Junchen; Stevens, Michael; Xing, Xiaoyun; Li, Daofeng; Zhang, Bo; Payton, Jacqueline E; Oltz, Eugene M; Jarvis, James N; Jiang, Kaiyu; Cicero, Theodore; Costello, Joseph F; Wang, Ting | G3 (Bethesda) | 26888867 | 2016 |
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| Regulatory consequences of neuronal ELAV-like protein binding to coding and non-coding RNAs in human brain. | Scheckel, Claudia; Drapeau, Elodie; Frias, Maria A; Park, Christopher Y; Fak, John; Zucker-Scharff, Ilana; Kou, Yan; Haroutunian, Vahram; Ma'ayan, Avi; Buxbaum, Joseph D; Darnell, Robert B | eLife | 26894958 | 2016 Feb 19 |
| Autoantibodies against homocysteinylated protein in a mouse model of folate deficiency-induced neural tube defects. | Denny, Kerina J; Kelly, Christina F; Kumar, Vinod; Witham, Katey L; Cabrera, Robert M; Finnell, Richard H; Taylor, Stephen M; Jeanes, Angela; Woodruff, Trent M | Birth defects research. Part A, Clinical and molecular teratology. | 26900104 | 2016 Mar; |
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| Organoids as Models for Neoplastic Transformation. | Neal, James T; Kuo, Calvin J | Annual review of pathology. | 26907527 | 2016 05 23; |
| Allosteric Inhibition of Bcr-Abl Kinase by High Affinity Monobody Inhibitors Directed to the Src Homology 2 (SH2)-Kinase Interface. | Wojcik, John; Lamontanara, Allan Joaquim; Grabe, Grzegorz; Koide, Akiko; Akin, Louesa; Gerig, Barbara; Hantschel, Oliver; Koide, Shohei | The Journal of biological chemistry. | 26912659 | 2016 Apr 15; |
| High-Throughput Measurement of Binding Kinetics by mRNA Display and Next-Generation Sequencing. | Jalali-Yazdi, Farzad; Lai, Lan Huong; Takahashi, Terry T; Roberts, Richard W | Angewandte Chemie (International ed. in English). | 26914638 | 2016 Mar 14; |
| Hypoxia as a therapy for mitochondrial disease. | Jain, Isha H; Zazzeron, Luca; Goli, Rahul; Alexa, Kristen; Schatzman-Bone, Stephanie; Dhillon, Harveen; Goldberger, Olga; Peng, Jun; Shalem, Ophir; Sanjana, Neville E; Zhang, Feng; Goessling, Wolfram; Zapol, Warren M; Mootha, Vamsi K | Science (New York, N.Y.). | 26917594 | 2016 Apr 1; |
| Morphologic effects of estrogen stimulation on 3D MCF-7 microtissues. | Vantangoli, Marguerite M; Wilson, Shelby; Madnick, Samantha J; Huse, Susan M; Boekelheide, Kim | Toxicology letters. | 26921789 | 2016 Apr 25; |
| The Human Toxome Collaboratorium: A Shared Environment for Multi-Omic Computational Collaboration within a Consortium. | Fasani, Rick A; Livi, Carolina B; Choudhury, Dipanwita R; Kleensang, Andre; Bouhifd, Mounir; Pendse, Salil N; McMullen, Patrick D; Andersen, Melvin E; Hartung, Thomas; Rosenberg, Michael | Frontiers in pharmacology. | 26924983 | 2015; |
| Activating Peptides for Cellular Uptake via Polymerization into High Density Brushes. | Blum, Angela P; Kammeyer, Jacquelin K; Gianneschi, Nathan C | Chemical science (Royal Society of Chemistry : 2010). | 26925209 | 2016 Feb 1; |
| Improving the accuracy of brain tumor surgery via Raman-based technology. | Hollon, Todd; Lewis, Spencer; Freudiger, Christian W; Sunney Xie, X; Orringer, Daniel A | Neurosurgical focus. | 26926067 | 2016 Mar; |
| Functional and topological diversity of LOV domain photoreceptors. | Glantz, Spencer T; Carpenter, Eric J; Melkonian, Michael; Gardner, Kevin H; Boyden, Edward S; Wong, Gane Ka-Shu; Chow, Brian Y | Proceedings of the National Academy of Sciences of the United States of America | 26929367 | 2016 Mar 15 |
| Helicobacter pylori in children with asthmatic conditions at school age, and their mothers. | den Hollander, W J; Sonnenschein-van der Voort, A M M; Holster, I L; de Jongste, J C; Jaddoe, V W; Hofman, A; Perez-Perez, G I; Moll, H A; Blaser, M J; Duijts, L; Kuipers, E J | Alimentary pharmacology & therapeutics. | 26932510 | 2016 Mar 1; |
| Assembly and operation of the autopatcher for automated intracellular neural recording in vivo. | Kodandaramaiah, Suhasa B; Holst, Gregory L; Wickersham, Ian R; Singer, Annabelle C; Franzesi, Giovanni Talei; McKinnon, Michael L; Forest, Craig R; Boyden, Edward S | Nature protocols | 26938115 | 2016 Apr |
| Neurovascular and Immuno-Imaging: From Mechanisms to Therapies. Proceedings of the Inaugural Symposium. | Akassoglou, Katerina; Agalliu, Dritan; Chang, Christopher J; Davalos, Dimitrios; Grutzendler, Jaime; Hillman, Elizabeth M C; Khakh, Baljit S; Kleinfeld, David; McGavern, Dorian B; Nelson, Sarah J; Zlokovic, Berislav V | Frontiers in neuroscience. | 26941593 | 2016; |
| Application of the TGx-28.65 transcriptomic biomarker to classify genotoxic and non-genotoxic chemicals in human TK6 cells in the presence of rat liver S9. | Yauk, Carole L; Buick, Julie K; Williams, Andrew; Swartz, Carol D; Recio, Leslie; Li, Heng-Hong; Fornace Jr, Albert J; Thomson, Errol M; Aubrecht, Jiri | Environmental and molecular mutagenesis. | 26946220 | 2016 May; |
| A Broad RNA Virus Survey Reveals Both miRNA Dependence and Functional Sequestration. | Scheel, Troels K H; Luna, Joseph M; Liniger, Matthias; Nishiuchi, Eiko; Rozen-Gagnon, Kathryn; Shlomai, Amir; Auray, Gaël; Gerber, Markus; Fak, John; Keller, Irene; Bruggmann, Rémy; Darnell, Robert B; Ruggli, Nicolas; Rice, Charles M | Cell host & microbe. | 26962949 | 2016 Mar 9; |
| Altering the Mitochondrial Fatty Acid Synthesis (mtFASII) Pathway Modulates Cellular Metabolic States and Bioactive Lipid Profiles as Revealed by Metabolomic Profiling. | Clay, Hayley B; Parl, Angelika K; Mitchell, Sabrina L; Singh, Larry; Bell, Lauren N; Murdock, Deborah G | PloS one. | 26963735 | 2016; |
| Autism-associated SHANK3 haploinsufficiency causes Ih channelopathy in human neurons. | Yi, Fei; Danko, Tamas; Botelho, Salome Calado; Patzke, Christopher; Pak, ChangHui; Wernig, Marius; Südhof, Thomas C | Science (New York, N.Y.). | 26966193 | 2016 May 6; |
| The microbiome and its potential as a cancer preventive intervention. | Bultman, Scott J | Seminars in oncology. | 26970128 | 2016 Feb; |
| Hybrid Microscopy: Enabling Inexpensive High-Performance Imaging through Combined Physical and Optical Magnifications. | Zhang, Yu Shrike; Chang, Jae-Byum; Alvarez, Mario Moisés; Trujillo-de Santiago, Grissel; Aleman, Julio; Batzaya, Byambaa; Krishnadoss, Vaishali; Ramanujam, Aishwarya Aravamudhan; Kazemzadeh-Narbat, Mehdi; Chen, Fei; Tillberg, Paul W; Dokmeci, Mehmet Remzi; Boyden, Edward S; Khademhosseini, Ali | Scientific reports | 26975883 | 2016 Mar 15 |
| Focusing light through scattering media by full-polarization digital optical phase conjugation. | Shen, Yuecheng; Liu, Yan; Ma, Cheng; Wang, Lihong V | Optics letters | 26977651 | 2016 Mar 15 |
| A SIRT2-Selective Inhibitor Promotes c-Myc Oncoprotein Degradation and Exhibits Broad Anticancer Activity. | Jing, Hui; Hu, Jing; He, Bin; Negrón Abril, Yashira L; Stupinski, Jack; Weiser, Keren; Carbonaro, Marisa; Chiang, Ying-Ling; Southard, Teresa; Giannakakou, Paraszkevi; Weiss, Robert S; Lin, Hening | Cancer cell. | 26977881 | 2016 Mar 14; |
| The Mitochondrial-Derived Peptide Humanin Protects RPE Cells From Oxidative Stress, Senescence, and Mitochondrial Dysfunction. | Sreekumar, Parameswaran G; Ishikawa, Keijiro; Spee, Chris; Mehta, Hemal H; Wan, Junxiang; Yen, Kelvin; Cohen, Pinchas; Kannan, Ram; Hinton, David R | Investigative ophthalmology & visual science. | 26990160 | 2016 Mar; |
| Physostigmine and Methylphenidate Induce Distinct Arousal States During Isoflurane General Anesthesia in Rats. | Kenny, Jonathan D; Chemali, Jessica J; Cotten, Joseph F; Van Dort, Christa J; Kim, Seong-Eun; Ba, Demba; Taylor, Norman E; Brown, Emery N; Solt, Ken | Anesthesia and analgesia. | 26991753 | 2016 Mar 17; |
| A Three-Enzyme Pathway with an Optimised Geometric Arrangement to Facilitate Substrate Transfer. | Liu, Minghui; Fu, Jinglin; Qi, Xiaodong; Wootten, Shaun; Woodbury, Neal W; Liu, Yan; Yan, Hao | Chembiochem : a European journal of chemical biology. | 26995014 | 2016 06 16; |
| RNA Imaging with Dimeric Broccoli in Live Bacterial and Mammalian Cells. | Filonov, Grigory S; Jaffrey, Samie R | Current protocols in chemical biology. | 26995352 | 2016 Mar 16; |
| A Neural Basis for Control of Cichlid Female Reproductive Behavior by Prostaglandin F2?. | Juntti, Scott A; Hilliard, Austin T; Kent, Kai R; Kumar, Anusha; Nguyen, Andrew; Jimenez, Mariana A; Loveland, Jasmine L; Mourrain, Philippe; Fernald, Russell D | Current biology : CB. | 26996507 | 2016 Apr 4; |
| T cell-intrinsic ASC critically promotes T(H)17-mediated experimental autoimmune encephalomyelitis. | Martin, Bradley N; Wang, Chenhui; Zhang, Cun-jin; Kang, Zizhen; Gulen, Muhammet Fatih; Zepp, Jarod A; Zhao, Junjie; Bian, Guanglin; Do, Jeong-su; Min, Booki; Pavicic Jr, Paul G; El-Sanadi, Caroline; Fox, Paul L; Akitsu, Aoi; Iwakura, Yoichiro; Sarkar, Ana | Nature immunology. | 26998763 | 2016 May; |
| UTX in muscle regeneration - the right dose and the right time. | Liu, Ling; Rando, Thomas A | The Journal of clinical investigation. | 26999609 | 2016 Apr 1; |
| Modeling the integration of bacterial rRNA fragments into the human cancer genome. | Sieber, Karsten B; Gajer, Pawel; Dunning Hotopp, Julie C | BMC bioinformatics | 27001685 | 2016 Mar 21 |
| Conditional deletion of L1CAM in human neurons impairs both axonal and dendritic arborization and action potential generation. | Patzke, Christopher; Acuna, Claudio; Giam, Louise R; Wernig, Marius; Südhof, Thomas C | The Journal of experimental medicine. | 27001749 | 2016 Apr 04; |
| Rapid and Long-Term Immunity Elicited by DNA-Encoded Antibody Prophylaxis and DNA Vaccination Against Chikungunya Virus. | Muthumani, Karuppiah; Block, Peter; Flingai, Seleeke; Muruganantham, Nagarajan; Chaaithanya, Itta Krishna; Tingey, Colleen; Wise, Megan; Reuschel, Emma L; Chung, Christopher; Muthumani, Abirami; Sarangan, Gopalsamy; Srikanth, Padma; Khan, Amir S; Vijayachari, Paluru; Sardesai, Niranjan Y; Kim, J Joseph; Ugen, Kenneth E; Weiner, David B | The Journal of infectious diseases. | 27001960 | 2016 Aug 01; |
| Calories or protein? The effect of dietary restriction on lifespan in rodents is explained by calories alone. | Speakman, J R; Mitchell, S E; Mazidi, M | Experimental gerontology. | 27006163 | 2016 12 15; |
| The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus. | Morgan, Josh Lyskowski; Berger, Daniel Raimund; Wetzel, Arthur Willis; Lichtman, Jeff William | Cell. | 27015312 | 2016 Mar 24; |
| Quantitative super-resolution imaging with qPAINT. | Jungmann, Ralf; Avendaño, Maier S; Dai, Mingjie; Woehrstein, Johannes B; Agasti, Sarit S; Feiger, Zachary; Rodal, Avital; Yin, Peng | Nature methods. | 27018580 | 2016 May; |
| Superior In vivo Transduction of Human Hepatocytes Using Engineered AAV3 Capsid. | Vercauteren, Koen; Hoffman, Brad E; Zolotukhin, Irene; Keeler, Geoffrey D; Xiao, Jing W; Basner-Tschakarjan, Etiena; High, Katherine A; Ertl, Hildegund Cj; Rice, Charles M; Srivastava, Arun; de Jong, Ype P; Herzog, Roland W | Molecular therapy : the journal of the American Society of Gene Therapy. | 27019999 | 2016 06; |
| N-Acetylcysteine in the Treatment of Pediatric Tourette Syndrome: Randomized, Double-Blind, Placebo-Controlled Add-On Trial. | Bloch, Michael H; Panza, Kaitlyn E; Yaffa, Alisa; Alvarenga, Pedro G; Jakubovski, Ewgeni; Mulqueen, Jilian M; Landeros-Weisenberger, Angeli; Leckman, James F | Journal of child and adolescent psychopharmacology. | 27027204 | 2016 05; |
| A primerless molecular diagnostic: phosphorothioated-terminal hairpin formation and self-priming extension (PS-THSP). | Jung, Cheulhee; Ellington, Andrew D | Analytical and bioanalytical chemistry. | 27032410 | 2016 Dec; |
| Metabolomic network analysis of estrogen-stimulated MCF-7 cells: a comparison of overrepresentation analysis, quantitative enrichment analysis and pathway analysis versus metabolite network analysis. | Maertens, Alexandra; Bouhifd, Mounir; Zhao, Liang; Odwin-DaCosta, Shelly; Kleensang, Andre; Yager, James D; Hartung, Thomas | Archives of toxicology. | 27039105 | 2016 Apr 2; |
| The Power of Engaging Citizen Scientists for Scientific Progress. | Garbarino, Jeanne; Mason, Christopher E | Journal of microbiology & biology education. | 27047581 | 2016 Mar; |
| A neuronal circuit for colour vision based on rod-cone opponency. | Joesch, Maximilian; Meister, Markus | Nature. | 27049951 | 2016 Apr 14; |
| PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage. | Hwang, Hun-Way; Park, Christopher Y; Goodarzi, Hani; Fak, John J; Mele, Aldo; Moore, Michael J; Saito, Yuhki; Darnell, Robert B | Cell reports | 27050522 | 2016 Apr 12 |
| Metabolomics-assisted proteomics identifies succinylation and SIRT5 as important regulators of cardiac function. | Sadhukhan, Sushabhan; Liu, Xiaojing; Ryu, Dongryeol; Nelson, Ornella D; Stupinski, John A; Li, Zhi; Chen, Wei; Zhang, Sheng; Weiss, Robert S; Locasale, Jason W; Auwerx, Johan; Lin, Hening | Proceedings of the National Academy of Sciences of the United States of America. | 27051063 | 2016 Apr 19; |
| Effect of Local and General Anesthetics on Interfacial Water. | Kundacina, Nenad; Shi, Minghui; Pollack, Gerald H | PloS one. | 27054588 | 2016; |
| Multiple Parallel Pathways of Translation Initiation on the CrPV IRES. | Petrov, Alexey; Grosely, Rosslyn; Chen, Jin; O'Leary, Seán E; Puglisi, Joseph D | Molecular cell. | 27058789 | 2016 Apr 7; |
| Lipoxin A4 inhibits microglial activation and reduces neuroinflammation and neuropathic pain after spinal cord hemisection. | Martini, Alessandra Cadete; Berta, Temugin; Forner, Stefânia; Chen, Gang; Bento, Allisson Freire; Ji, Ru-Rong; Rae, Giles Alexander | Journal of neuroinflammation. | 27059991 | 2016 Apr 08; |
| A Glial K/Cl Transporter Controls Neuronal Receptive Ending Shape by Chloride Inhibition of an rGC. | Singhvi, Aakanksha; Liu, Bingqian; Friedman, Christine J; Fong, Jennifer; Lu, Yun; Huang, Xin-Yun; Shaham, Shai | Cell. | 27062922 | 2016 May 05; |
| Chemical and biological production of cyclotides. | Li, Yilong; Bi, Tao; Camarero, Julio A | Advances in botanical research. | 27064329 | 2015; |
| New Techniques for the Study of Neural Tube Defects. | Lei, Yunping; Finnell, Richard H | Advanced techniques in biology & medicine. | 27066597 | 2016 Feb; |
| PROS-1/Prospero Is a Major Regulator of the Glia-Specific Secretome Controlling Sensory-Neuron Shape and Function in C. elegans. | Wallace, Sean W; Singhvi, Aakanksha; Liang, Yupu; Lu, Yun; Shaham, Shai | Cell reports. | 27068465 | 2016 Apr 19; |
| Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle. | Gorvitovskaia, Anastassia; Holmes, Susan P; Huse, Susan M | Microbiome | 27068581 | 2016 Apr 12 |
| Naturally occurring mitochondrial-derived peptides are age-dependent regulators of apoptosis, insulin sensitivity, and inflammatory markers. | Cobb, Laura J; Lee, Changhan; Xiao, Jialin; Yen, Kelvin; Wong, Richard G; Nakamura, Hiromi K; Mehta, Hemal H; Gao, Qinglei; Ashur, Carmel; Huffman, Derek M; Wan, Junxiang; Muzumdar, Radhika; Barzilai, Nir; Cohen, Pinchas | Aging. | 27070352 | 2016 04; |
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| Nutrition and energetics in rodent longevity research. | Gibbs, Victoria K; Smith Jr, Daniel L | Experimental gerontology. | 27073168 | 2016 Apr 9; |
| Minireview: Genome Editing of Human Pluripotent Stem Cells for Modeling Metabolic Disease. | Yu, Haojie; Cowan, Chad A | Molecular endocrinology (Baltimore, Md.). | 27075706 | 2016 Jun; |
| Stanford's Outcomes Research in Kids (STORK): a prospective study of healthy pregnant women and their babies in Northern California. | Ley, Catherine; Sanchez, Maria de la Luz; Mathur, Ankur; Yang, Shufang; Sundaram, Vandana; Parsonnet, Julie | BMJ open. | 27075843 | 2016 Apr 13; |
| A distant trophoblast-specific enhancer controls HLA-G expression at the maternal-fetal interface. | Ferreira, Leonardo M R; Meissner, Torsten B; Mikkelsen, Tarjei S; Mallard, William; O'Donnell, Charles W; Tilburgs, Tamara; Gomes, Hannah A B; Camahort, Raymond; Sherwood, Richard I; Gifford, David K; Rinn, John L; Cowan, Chad A; Strominger, Jack L | Proceedings of the National Academy of Sciences of the United States of America. | 27078102 | 2016 May 10; |
| ''Next-generation'' mesenchymal stem or stromal cells for the in vivo delivery of bioactive factors: progressing toward the clinic. | Nolta, Jan A | Transfusion. | 27079315 | 2016 Apr; |
| Helminth infection promotes colonization resistance via type 2 immunity. | Ramanan, Deepshika; Bowcutt, Rowann; Lee, Soo Ching; Tang, Mei San; Kurtz, Zachary D; Ding, Yi; Honda, Kenya; Gause, William C; Blaser, Martin J; Bonneau, Richard A; Lim, Yvonne A L; Loke, P'ng; Cadwell, Ken | Science (New York, N.Y.) | 27080105 | 2016 Apr 29 |
| Humanin: Functional Interfaces with IGF-I. | Xiao, J; Kim, S-J; Cohen, P; Yen, K | Growth hormone & IGF research : official journal of the Growth Hormone Research Society and the International IGF Research Society. | 27082450 | 2016 08; |
| Tutorial on photoacoustic tomography. | Zhou, Yong; Yao, Junjie; Wang, Lihong V | Journal of biomedical optics. | 27086868 | 2016 Jun; |
| The oncogenic transcription factor c-Jun regulates glutaminase expression and sensitizes cells to glutaminase-targeted therapy. | Lukey, Michael J; Greene, Kai Su; Erickson, Jon W; Wilson, Kristin F; Cerione, Richard A | Nature communications. | 27089238 | 2016; |
| Human induced pluripotent stem cell-derived cardiomyocytes recapitulate the predilection of breast cancer patients to doxorubicin-induced cardiotoxicity. | Burridge, Paul W; Li, Yong Fuga; Matsa, Elena; Wu, Haodi; Ong, Sang-Ging; Sharma, Arun; Holmström, Alexandra; Chang, Alex C; Coronado, Michael J; Ebert, Antje D; Knowles, Joshua W; Telli, Melinda L; Witteles, Ronald M; Blau, Helen M; Bernstein, Daniel; Al | Nature medicine. | 27089514 | 2016 May; |
| Nuclear RNA-seq of single neurons reveals molecular signatures of activation. | Lacar, Benjamin; Linker, Sara B; Jaeger, Baptiste N; Krishnaswami, Suguna; Barron, Jerika; Kelder, Martijn; Parylak, Sarah; Paquola, Apuã; Venepally, Pratap; Novotny, Mark; O'Connor, Carolyn; Fitzpatrick, Conor; Erwin, Jennifer; Hsu, Jonathan Y; Husband, David; McConnell, Michael J; Lasken, Roger; Gage, Fred H | Nature communications. | 27090946 | 2016 Apr 19; |
| Generating High-Accuracy Peptide-Binding Data in High Throughput with Yeast Surface Display and SORTCERY. | Reich, Lothar Luther; Dutta, Sanjib; Keating, Amy E | Methods in molecular biology (Clifton, N.J.). | 27094295 | 2016; |
| Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template. | Majka, Piotr; Chaplin, Tristan A; Yu, Hsin-Hao; Tolpygo, Alexander; Mitra, Partha P; Wójcik, Daniel K; Rosa, Marcello G P | The Journal of comparative neurology. | 27099164 | 2016 08 01; |
| The Intestinal Microbiome and Estrogen Receptor-Positive Female Breast Cancer. | Kwa, Maryann; Plottel, Claudia S; Blaser, Martin J; Adams, Sylvia | Journal of the National Cancer Institute. | 27107051 | 2016 08; |
| Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA. | Yamano, Takashi; Nishimasu, Hiroshi; Zetsche, Bernd; Hirano, Hisato; Slaymaker, Ian M; Li, Yinqing; Fedorova, Iana; Nakane, Takanori; Makarova, Kira S; Koonin, Eugene V; Ishitani, Ryuichiro; Zhang, Feng; Nureki, Osamu | Cell | 27114038 | 2016 May 05 |
| Epigenetic profiles signify cell fate plasticity in unipotent spermatogonial stem and progenitor cells. | Liu, Ying; Giannopoulou, Eugenia G; Wen, Duancheng; Falciatori, Ilaria; Elemento, Olivier; Allis, C David; Rafii, Shahin; Seandel, Marco | Nature communications. | 27117588 | 2016 Apr 27; |
| Programmable RNA-binding protein composed of repeats of a single modular unit. | Adamala, Katarzyna P; Martin-Alarcon, Daniel A; Boyden, Edward S | Proceedings of the National Academy of Sciences of the United States of America. | 27118836 | 2016 May 10; |
| Complementation of mitochondrial electron transport chain by manipulation of the NAD+/NADH ratio. | Titov, Denis V; Cracan, Valentin; Goodman, Russell P; Peng, Jun; Grabarek, Zenon; Mootha, Vamsi K | Science (New York, N.Y.). | 27124460 | 2016 Apr 8; |
| Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet. | Mahana, Douglas; Trent, Chad M; Kurtz, Zachary D; Bokulich, Nicholas A; Battaglia, Thomas; Chung, Jennifer; Müller, Christian L; Li, Huilin; Bonneau, Richard A; Blaser, Martin J | Genome medicine. | 27124954 | 2016; |
| Antibiotic use and its consequences for the normal microbiome. | Blaser, Martin J | Science (New York, N.Y.) | 27126037 | 2016 Apr 29 |
| Viral genome imaging of hepatitis C virus to probe heterogeneous viral infection and responses to antiviral therapies. | Ramanan, Vyas; Trehan, Kartik; Ong, Mei-Lyn; Luna, Joseph M; Hoffmann, Hans-Heinrich; Espiritu, Christine; Sheahan, Timothy P; Chandrasekar, Hamsika; Schwartz, Robert E; Christine, Kathleen S; Rice, Charles M; van Oudenaarden, Alexander; Bhatia, Sangeeta N | Virology. | 27128351 | 2016 07; |
| Pharmacological Reprogramming of Fibroblasts into Neural Stem Cells by Signaling-Directed Transcriptional Activation. | Zhang, Mingliang; Lin, Yuan-Hung; Sun, Yujiao Jennifer; Zhu, Saiyong; Zheng, Jiashun; Liu, Kai; Cao, Nan; Li, Ke; Huang, Yadong; Ding, Sheng | Cell stem cell. | 27133794 | 2016 May 05; |
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| In vivo imaging of dendritic pruning in dentate granule cells. | Gonçalves, J Tiago; Bloyd, Cooper W; Shtrahman, Matthew; Johnston, Stephen T; Schafer, Simon T; Parylak, Sarah L; Tran, Thanh; Chang, Tina; Gage, Fred H | Nature neuroscience. | 27135217 | 2016 06; |
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| Asialoglycoprotein receptor 1 is a specific cell-surface marker for isolating hepatocytes derived from human pluripotent stem cells. | Peters, Derek T; Henderson, Christopher A; Warren, Curtis R; Friesen, Max; Xia, Fang; Becker, Caroline E; Musunuru, Kiran; Cowan, Chad A | Development (Cambridge, England). | 27143754 | 2016 May 1; |
| Humanized mice efficiently engrafted with fetal hepatoblasts and syngeneic immune cells develop human monocytes and NK cells. | Billerbeck, Eva; Mommersteeg, Michiel C; Shlomai, Amir; Xiao, Jing W; Andrus, Linda; Bhatta, Ankit; Vercauteren, Koen; Michailidis, Eleftherios; Dorner, Marcus; Krishnan, Anuradha; Charlton, Michael R; Chiriboga, Luis; Rice, Charles M; de Jong, Ype P | Journal of hepatology. | 27151182 | 2016 08; |
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| Polymeric nanofiber coating with tunable combinatorial antibiotic delivery prevents biofilm-associated infection in vivo. | Ashbaugh, Alyssa G; Jiang, Xuesong; Zheng, Jesse; Tsai, Andrew S; Kim, Woo-Shin; Thompson, John M; Miller, Robert J; Shahbazian, Jonathan H; Wang, Yu; Dillen, Carly A; Ordonez, Alvaro A; Chang, Yong S; Jain, Sanjay K; Jones, Lynne C; Sterling, Robert S; M | Proceedings of the National Academy of Sciences of the United States of America. | 27791154 | 2016 Nov 08; |
| Optogenetic activation of dopamine neurons in the ventral tegmental area induces reanimation from general anesthesia. | Taylor, Norman E; Van Dort, Christa J; Kenny, Jonathan D; Pei, JunZhu; Guidera, Jennifer A; Vlasov, Ksenia Y; Lee, Justin T; Boyden, Edward S; Brown, Emery N; Solt, Ken | Proceedings of the National Academy of Sciences of the United States of America. | 27791160 | 2016 Oct 24; |
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| Telomere shortening and metabolic compromise underlie dystrophic cardiomyopathy. | Chang, Alex Chia Yu; Ong, Sang-Ging; LaGory, Edward L; Kraft, Peggy E; Giaccia, Amato J; Wu, Joseph C; Blau, Helen M | Proceedings of the National Academy of Sciences of the United States of America. | 27799523 | ; |
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| Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. | Seely, Jeffrey S; Kaufman, Matthew T; Ryu, Stephen I; Shenoy, Krishna V; Cunningham, John P; Churchland, Mark M | PLoS computational biology. | 27814353 | 2016 Nov; |
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| Label-free high-throughput detection and quantification of circulating melanoma tumor cell clusters by linear-array-based photoacoustic tomography. | Hai, Pengfei; Zhou, Yong; Zhang, Ruiying; Ma, Jun; Li, Yang; Shao, Jin-Yu; Wang, Lihong V | Journal of biomedical optics. | 27832253 | 2017 Apr 01; |
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| Oxidative costs of reproduction in mouse strains selected for different levels of food intake and which differ in reproductive performance. | Jothery, Aqeel H Al; Vaanholt, Lobke M; Mody, Nimesh; Arnous, Anis; Lykkesfeldt, Jens; Bünger, Lutz; Hill, William G; Mitchell, Sharon E; Allison, David B; Speakman, John R | Scientific reports. | 27841266 | 2016 Nov 14; |
| Tumor-suppressor genes that escape from X-inactivation contribute to cancer sex bias. | Dunford, Andrew; Weinstock, David M; Savova, Virginia; Schumacher, Steven E; Cleary, John P; Yoda, Akinori; Sullivan, Timothy J; Hess, Julian M; Gimelbrant, Alexander A; Beroukhim, Rameen; Lawrence, Michael S; Getz, Gad; Lane, Andrew A | Nature genetics. | 27869828 | 2017 Jan; |
| Integrative classification of human coding and noncoding genes through RNA metabolism profiles. | Mukherjee, Neelanjan; Calviello, Lorenzo; Hirsekorn, Antje; de Pretis, Stefano; Pelizzola, Mattia; Ohler, Uwe | Nature structural & molecular biology. | 27870833 | 2017 01; |
| A pilot test of the acceptability and efficacy of narrative and non-narrative health education materials in a low health literacy population. | Moran, Meghan Bridgid; Frank, Lauren B; Chatterjee, Joyee S; Murphy, Sheila T; Baezconde-Garbanati, Lourdes | Journal of communication in healthcare. | 27872657 | 2016; |
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| Potential of Small Molecule-Mediated Reprogramming of Rod Photoreceptors to Treat Retinitis Pigmentosa. | Nakamura, Paul A; Tang, Shibing; Shimchuk, Andy A; Ding, Sheng; Reh, Thomas A | Investigative ophthalmology & visual science. | 27893103 | 2016 11 01; |
| Intronic polyadenylation of PDGFR? in resident stem cells attenuates muscle fibrosis. | Mueller, Alisa A; van Velthoven, Cindy T; Fukumoto, Kathryn D; Cheung, Tom H; Rando, Thomas A | Nature. | 27894125 | 2016 Dec 08; |
| Combine and Conquer: Double CTLA-4 and PD-1 Blockade Combined with Whole Tumor Antigen Vaccine Cooperate to Eradicate Tumors. | Homicsko, Krisztian; Duraiswamy, Jaikumar; Doucey, Marie-Agnès; Coukos, George | Cancer research. | 27909064 | 2016 12 01; |
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| Stretchable multichannel antennas in soft wireless optoelectronic implants for optogenetics. | Park, Sung Il; Shin, Gunchul; McCall, Jordan G; Al-Hasani, Ream; Norris, Aaron; Xia, Li; Brenner, Daniel S; Noh, Kyung Nim; Bang, Sang Yun; Bhatti, Dionnet L; Jang, Kyung-In; Kang, Seung-Kyun; Mickle, Aaron D; Dussor, Gregory; Price, Theodore J; Gereau 4t | Proceedings of the National Academy of Sciences of the United States of America. | 27911798 | 2016 Dec 13; |
| High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing. | Moffitt, Jeffrey R; Hao, Junjie; Bambah-Mukku, Dhananjay; Lu, Tian; Dulac, Catherine; Zhuang, Xiaowei | Proceedings of the National Academy of Sciences of the United States of America. | 27911841 | 2016 Dec 13; |
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| Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array. | Zetsche, Bernd; Heidenreich, Matthias; Mohanraju, Prarthana; Fedorova, Iana; Kneppers, Jeroen; DeGennaro, Ellen M; Winblad, Nerges; Choudhury, Sourav R; Abudayyeh, Omar O; Gootenberg, Jonathan S; Wu, Wen Y; Scott, David A; Severinov, Konstantin; van der Oost, John; Zhang, Feng | Nature biotechnology. | 27918548 | 2017 Jan; |
| Reaching 200-ps timing resolution in a time-of-flight and depth-of-interaction positron emission tomography detector using phosphor-coated crystals and high-density silicon photomultipliers. | Kwon, Sun Il; Ferri, Alessandro; Gola, Alberto; Berg, Eric; Piemonte, Claudio; Cherry, Simon R; Roncali, Emilie | Journal of medical imaging (Bellingham, Wash.). | 27921069 | 2016 Oct; |
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| Small molecule modulator of sigma 2 receptor is neuroprotective and reduces cognitive deficits and neuroinflammation in experimental models of Alzheimer's disease. | Yi, Bitna; Sahn, James J; Ardestani, Pooneh Memar; Evans, Andrew K; Scott, Luisa L; Chan, Jessica Z; Iyer, Sangeetha; Crisp, Ashley; Zuniga, Gabriella; Pierce, Jonathan T; Martin, Stephen F; Shamloo, Mehrdad | Journal of neurochemistry. | 27926996 | 2017 Feb; |
| Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway. | McEwan, Deborah L; Feinbaum, Rhonda L; Stroustrup, Nicholas; Haas, Wilhelm; Conery, Annie L; Anselmo, Anthony; Sadreyev, Ruslan; Ausubel, Frederick M | BMC biology. | 27927200 | 2016 12 07; |
| Gamma frequency entrainment attenuates amyloid load and modifies microglia. | Iaccarino, Hannah F; Singer, Annabelle C; Martorell, Anthony J; Rudenko, Andrii; Gao, Fan; Gillingham, Tyler Z; Mathys, Hansruedi; Seo, Jinsoo; Kritskiy, Oleg; Abdurrob, Fatema; Adaikkan, Chinnakkaruppan; Canter, Rebecca G; Rueda, Richard; Brown, Emery N; Boyden, Edward S; Tsai, Li-Huei | Nature. | 27929004 | 2016 12 07; |
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| Microglia activation in a pediatric rabbit model of tuberculous meningitis. | Tucker, Elizabeth W; Pokkali, Supriya; Zhang, Zhi; DeMarco, Vincent P; Klunk, Mariah; Smith, Elizabeth S; Ordonez, Alvaro A; Penet, Marie-France; Bhujwalla, Zaver; Jain, Sanjay K; Kannan, Sujatha | Disease models & mechanisms. | 27935825 | 2016 Dec 01; |
| Pyocyanin degradation by a tautomerizing demethylase inhibits Pseudomonas aeruginosa biofilms. | Costa, Kyle C; Glasser, Nathaniel R; Conway, Stuart J; Newman, Dianne K | Science (New York, N.Y.). | 27940577 | 2017 Jan 13; |
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| Reducing neuroinflammation by delivery of IL-10 encoding lentivirus from multiple-channel bridges. | Margul, Daniel J; Park, Jonghyuck; Boehler, Ryan M; Smith, Dominique R; Johnson, Mitchell A; McCreedy, Dylan A; He, Ting; Ataliwala, Aishani; Kukushliev, Todor V; Liang, Jesse; Sohrabi, Alireza; Goodman, Ashley G; Walthers, Christopher M; Shea, Lonnie D; | Bioengineering & translational medicine. | 27981242 | 2016 Jun; |
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| Molecular Checkpoint Decisions Made by Subverted Vascular Niche Transform Indolent Tumor Cells into Chemoresistant Cancer Stem Cells. | Cao, Zhongwei; Scandura, Joseph M; Inghirami, Giorgio G; Shido, Koji; Ding, Bi-Sen; Rafii, Shahin | Cancer cell. | 27989801 | 2017 Jan 09; |
| A preliminary study of movement intensity during a Go/No-Go task and its association with ADHD outcomes and symptom severity. | Li, Fenghua; Zheng, Yi; Smith, Stephanie D; Shic, Frederick; Moore, Christina C; Zheng, Xixi; Qi, Yanjie; Liu, Zhengkui; Leckman, James F | Child and adolescent psychiatry and mental health. | 27999615 | 2016; |
| In vivo label-free photoacoustic flow cytography and on-the-spot laser killing of single circulating melanoma cells. | He, Yun; Wang, Lidai; Shi, Junhui; Yao, Junjie; Li, Lei; Zhang, Ruiying; Huang, Chih-Hsien; Zou, Jun; Wang, Lihong V | Scientific reports. | 28000788 | 2016 Dec 21; |
| p120-catenin prevents multinucleation through control of MKLP1-dependent RhoA activity during cytokinesis. | van de Ven, Robert A H; de Groot, Jolien S; Park, Danielle; van Domselaar, Robert; de Jong, Danielle; Szuhai, Karoly; van der Wall, Elsken; Rueda, Oscar M; Ali, H Raza; Caldas, Carlos; van Diest, Paul J; Hetzer, Martin W; Sahai, Erik; Derksen, Patrick W B | Nature communications. | 28004812 | 2016 Dec 22; |
| High-speed photoacoustic microscopy of mouse cortical microhemodynamics. | Lin, Li; Yao, Junjie; Zhang, Ruiying; Chen, Chun-Cheng; Huang, Chih-Hsien; Li, Yang; Wang, Lidai; Chapman, William; Zou, Jun; Wang, Lihong V | Journal of biophotonics. | 28009098 | 2016 Dec 23; |
| Patient-derived xenograft (PDX) models in basic and translational breast cancer research. | Dobrolecki, Lacey E; Airhart, Susie D; Alferez, Denis G; Aparicio, Samuel; Behbod, Fariba; Bentires-Alj, Mohamed; Brisken, Cathrin; Bult, Carol J; Cai, Shirong; Clarke, Robert B; Dowst, Heidi; Ellis, Matthew J; Gonzalez-Suarez, Eva; Iggo, Richard D; Kabos, Peter; Li, Shunqiang; Lindeman, Geoffrey J; Marangoni, Elisabetta; McCoy, Aaron; Meric-Bernstam, Funda; Piwnica-Worms, Helen; Poupon, Marie-France; Reis-Filho, Jorge; Sartorius, Carol A; Scabia, Valentina; Sflomos, George; Tu, Yizheng; Vaillant, François; Visvader, Jane E; Welm, Alana; Wicha, Max S; Lewis, Michael T | Cancer metastasis reviews. | 28025748 | 2016 Dec; |
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| SREBP1 Contributes to Resolution of Pro-inflammatory TLR4 Signaling by Reprogramming Fatty Acid Metabolism. | Oishi, Yumiko; Spann, Nathanael J; Link, Verena M; Muse, Evan D; Strid, Tobias; Edillor, Chantle; Kolar, Matthew J; Matsuzaka, Takashi; Hayakawa, Sumio; Tao, Jenhan; Kaikkonen, Minna U; Carlin, Aaron F; Lam, Michael T; Manabe, Ichiro; Shimano, Hitoshi; Saghatelian, Alan; Glass, Christopher K | Cell metabolism. | 28041958 | 2017 Feb 07; |
| Bioconjugated Nanoparticles for Biosensing, in Vivo Imaging, and Medical Diagnostics. | Kairdolf, Brad A; Qian, Ximei; Nie, Shuming | Analytical chemistry. | 28043119 | 2017 01 17; |
| Direct measurement of hypoxia in a xenograft multiple myeloma model by optical-resolution photoacoustic microscopy. | Imai, Toru; Muz, Barbara; Yeh, Cheng-Hung; Yao, Junjie; Zhang, Ruiying; Azab, Abdel Kareem; Wang, Lihong | Cancer biology & therapy. | 28045569 | 2017 02; |
| Reconfigurable Three-Dimensional Gold Nanorod Plasmonic Nanostructures Organized on DNA Origami Tripod. | Zhan, Pengfei; Dutta, Palash K; Wang, Pengfei; Song, Gang; Dai, Mingjie; Zhao, Shu-Xia; Wang, Zhen-Gang; Yin, Peng; Zhang, Wei; Ding, Baoquan; Ke, Yonggang | ACS nano. | 28056172 | 2017 Feb 28; |
| Cas13b Is a Type VI-B CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx27 and Csx28. | Smargon, Aaron A; Cox, David B T; Pyzocha, Neena K; Zheng, Kaijie; Slaymaker, Ian M; Gootenberg, Jonathan S; Abudayyeh, Omar A; Essletzbichler, Patrick; Shmakov, Sergey; Makarova, Kira S; Koonin, Eugene V; Zhang, Feng | Molecular cell. | 28065598 | 2017 Feb 16; |
| Neural Circuit Inference from Function to Structure. | Real, Esteban; Asari, Hiroki; Gollisch, Tim; Meister, Markus | Current biology : CB. | 28065610 | 2017 Jan 23; |
| Edge effect of strained bilayer nanofilms for tunable multistability and actuation. | Hu, N; Han, X; Huang, S; Grover, H M; Yu, X; Zhang, L N; Trase, I; Zhang, J X J; Zhang, L; Dong, L X; Chen, Z | Nanoscale. | 28067396 | 2017 Jan 09; |
| A novel humanized mouse model with significant improvement of class-switched, antigen-specific antibody production. | Yu, Hua; Borsotti, Chiara; Schickel, Jean-Nicolas; Zhu, Shu; Strowig, Till; Eynon, Elizabeth E; Frleta, Davor; Gurer, Cagan; Murphy, Andrew J; Yancopoulos, George D; Meffre, Eric; Manz, Markus G; Flavell, Richard A | Blood. | 28077418 | 2017 Feb 23; |
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| Dermal ?? T Cells Do Not Freely Re-Circulate Out of Skin and Produce IL-17 to Promote Neutrophil Infiltration during Primary Contact Hypersensitivity. | Jiang, Xiaodong; Park, Chang Ook; Geddes Sweeney, Jenna; Yoo, Min Jae; Gaide, Olivier; Kupper, Thomas Seth | PloS one. | 28081153 | 2017; |
| Trial-by-Trial Motor Cortical Correlates of a Rapidly Adapting Visuomotor Internal Model. | Stavisky, Sergey D; Kao, Jonathan C; Ryu, Stephen I; Shenoy, Krishna V | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 28087767 | 2017 Feb 15; |
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| Integrated Microfluidic Aptasensor for Mass Spectrometric Detection of Vasopressin in Human Plasma Ultrafiltrate. | Yang, J; Zhu, J; Pei, R; Oliver, J A; Landry, D W; Stojanovic, M N; Lin, Q | Analytical methods : advancing methods and applications. | 28090219 | 2016 Jul 14; |
| Sox17 drives functional engraftment of endothelium converted from non-vascular cells. | Schachterle, William; Badwe, Chaitanya R; Palikuqi, Brisa; Kunar, Balvir; Ginsberg, Michael; Lis, Raphael; Yokoyama, Masataka; Elemento, Olivier; Scandura, Joseph M; Rafii, Shahin | Nature communications. | 28091527 | 2017 Jan 16; |
| Dexmedetomidine Disrupts the Local and Global Efficiencies of Large-scale Brain Networks. | Hashmi, Javeria A; Loggia, Marco L; Khan, Sheraz; Gao, Lei; Kim, Jieun; Napadow, Vitaly; Brown, Emery N; Akeju, Oluwaseun | Anesthesiology. | 28092321 | 2017 Mar; |
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| Nematophagous fungus Arthrobotrys oligospora mimics olfactory cues of sex and food to lure its nematode prey. | Hsueh, Yen-Ping; Gronquist, Matthew R; Schwarz, Erich M; Nath, Ravi David; Lee, Ching-Han; Gharib, Shalha; Schroeder, Frank C; Sternberg, Paul W | eLife. | 28098555 | 2017 Jan 18; |
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| Inorganic-Organic Interpenetrating Network Hydrogels as Tissue-Integrating Luminescent Implants: Physicochemical Characterization and Preclinical Evaluation. | Unruh, Rachel M; Bornhoeft, Lindsey R; Nichols, Scott P; Wisniewski, Natalie A; McShane, Michael J | Macromolecular bioscience | 34847287 | 2022 Mar |
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| Complete Genome Sequence of Arachnia rubra Strain DSM 100122T, a Cultured Member of the Human Oral Microbiome. | Ouellette, Matthew; Bejian, Andrew A; Chen, Tsute; Jones, Dakota S; Johnston, Christopher D; Dewhirst, Floyd E | Microbiology resource announcements | 34854708 | 2021 Dec 02 |
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| Fungicidal amphotericin B sponges are assemblies of staggered asymmetric homodimers encasing large void volumes. | Lewandowska, Agnieszka; Soutar, Corinne P; Greenwood, Alexander I; Nimerovsky, Evgeny; De Lio, Ashley M; Holler, Jordan T; Hisao, Grant S; Khandelwal, Anuj; Zhang, Jiabao; SantaMaria, Anna M; Schwieters, Charles D; Pogorelov, Taras V; Burke, Martin D; Rienstra, Chad M | Nature structural & molecular biology | 34887566 | 2021 12 |
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| Molecular self-avoidance in synaptic neurexin complexes. | Wang, Cosmos Yuqi; Trotter, Justin H; Liakath-Ali, Kif; Lee, Sung-Jin; Liu, Xinran; Südhof, Thomas C | Science advances | 34919427 | 2021 Dec 17 |
| Citrobacter rodentium(ϕStx2dact), a murine infection model for enterohemorrhagic Escherichia coli. | Thorpe, Cheleste M; Pulsifer, Amanda R; Osburne, Marcia S; Vanaja, Sivapriya Kailasan; Leong, John M | Current opinion in microbiology | 34929548 | 2022 Feb |
| FMRP regulates mRNAs encoding distinct functions in the cell body and dendrites of CA1 pyramidal neurons. | Hale, Caryn R; Sawicka, Kirsty; Mora, Kevin; Fak, John J; Kang, Jin Joo; Cutrim, Paula; Cialowicz, Katarzyna; Carroll, Thomas S; Darnell, Robert B | eLife | 34939924 | 2021 12 23 |
| Meiotic Cas9 expression mediates gene conversion in the male and female mouse germline. | Weitzel, Alexander J; Grunwald, Hannah A; Weber, Ceri; Levina, Rimma; Gantz, Valentino M; Hedrick, Stephen M; Bier, Ethan; Cooper, Kimberly L | PLoS biology | 34941868 | 2021 12 |
| Mouse characteristics that affect establishing xenografts from hepatocellular carcinoma patient biopsies in the United States. | Zou, Chenhui; El Dika, Imane; Vercauteren, Koen O A; Capanu, Marinela; Chou, Joanne; Shia, Jinru; Pilet, Jill; Quirk, Corrine; Lalazar, Gadi; Andrus, Linda; Kabbani, Mohammad; Yaqubie, Amin; Khalil, Danny; Mergoub, Taha; Chiriboga, Luis; Rice, Charles M; Abou-Alfa, Ghassan K; de Jong, Ype P | Cancer medicine | 34951132 | 2022 Feb |
| In Silico Identification and Experimental Validation of Peptide-Based Inhibitors Targeting Clostridium difficile Toxin A. | Xiao, Xingqing; Sarma, Sudeep; Menegatti, Stefano; Crook, Nathan; Magness, Scott T; Hall, Carol K | ACS chemical biology | 34965093 | 2022 01 21 |
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| Fluorescence activation mechanism and imaging of drug permeation with new sensors for smoking-cessation ligands. | Nichols, Aaron L; Blumenfeld, Zack; Fan, Chengcheng; Luebbert, Laura; Blom, Annet E M; Cohen, Bruce N; Marvin, Jonathan S; Borden, Philip M; Kim, Charlene H; Muthusamy, Anand K; Shivange, Amol V; Knox, Hailey J; Campello, Hugo Rego; Wang, Jonathan H; Dougherty, Dennis A; Looger, Loren L; Gallagher, Timothy; Rees, Douglas C; Lester, Henry A | eLife | 34982029 | 2022 01 04 |
| Wearable aptamer-field-effect transistor sensing system for noninvasive cortisol monitoring. | Wang, Bo; Zhao, Chuanzhen; Wang, Zhaoqing; Yang, Kyung-Ae; Cheng, Xuanbing; Liu, Wenfei; Yu, Wenzhuo; Lin, Shuyu; Zhao, Yichao; Cheung, Kevin M; Lin, Haisong; Hojaiji, Hannaneh; Weiss, Paul S; Stojanović, Milan N; Tomiyama, A Janet; Andrews, Anne M; Emaminejad, Sam | Science advances | 34985954 | 2022 Jan 07 |
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| Water-Soluble Luminescent Silicon Nanocrystals by Plasma-Induced Acrylic Acid Grafting and PEGylation. | Li, Zhaohan; Mahajan, Advitiya; Andaraarachchi, Himashi P; Lee, Yeonjoo; Kortshagen, Uwe R | ACS applied bio materials | 35014827 | 2022 01 17 |
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| Electrophysiological signatures of inhibitory control in children with Tourette syndrome and attention-deficit/hyperactivity disorder. | Morand-Beaulieu, Simon; Smith, Stephanie D; Ibrahim, Karim; Wu, Jia; Leckman, James F; Crowley, Michael J; Sukhodolsky, Denis G | Cortex; a journal devoted to the study of the nervous system and behavior | 35042055 | 2022 Feb |
| FZD2 Regulates Murine Hair Follicle Function and Maintenance. | Brennan-Crispi, Donna M; Frankfurter, Maxwell; Murphy, Christina; Sheng, Emily; Xu, Mingang; Morrisey, Edward E; Millar, Sarah E; Leung, Thomas H | The Journal of investigative dermatology | 35051380 | 2022 Jan 17 |
| Omicron's message on vaccines: Boosting begets breadth. | Wesemann, Duane R | Cell | 35065712 | 2022 02 03 |
| High-dose rifampin improves bactericidal activity without increased intracerebral inflammation in animal models of tuberculous meningitis. | Ruiz-Bedoya, Camilo A; Mota, Filipa; Tucker, Elizabeth W; Mahmud, Farina J; Reyes-Mantilla, Maria I; Erice, Clara; Bahr, Melissa; Flavahan, Kelly; de Jesus, Patricia; Kim, John; Foss, Catherine A; Peloquin, Charles A; Hammoud, Dima A; Ordonez, Alvaro A; Pardo, Carlos A; Jain, Sanjay K | The Journal of clinical investigation | 35085105 | 2022 03 15 |
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| Fluorescent labeling of abundant reactive entities (FLARE) for cleared-tissue and super-resolution microscopy. | Lee, Min Yen; Mao, Chenyi; Glaser, Adam K; Woodworth, Marcus A; Halpern, Aaron R; Ali, Adilijiang; Liu, Jonathan T C; Vaughan, Joshua C | Nature protocols | 35110740 | 2022 Mar |
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| SWI/SNF senses carbon starvation with a pH-sensitive low-complexity sequence. | Gutierrez, J Ignacio; Brittingham, Gregory P; Karadeniz, Yonca; Tran, Kathleen D; Dutta, Arnob; Holehouse, Alex S; Peterson, Craig L; Holt, Liam J | eLife | 35129437 | 2022 Feb 07 |
| Simulated traumatic brain injury in in-vitro mouse neuronal and brain endothelial cell culture models. | Meyer, Luise J; Lotze, Felicia P; Riess, Matthias L | Journal of pharmacological and toxicological methods | 35149185 | 2022 |
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| Ataxia-linked SLC1A3 mutations alter EAAT1 chloride channel activity and glial regulation of CNS function. | Wu, Qianyi; Akhter, Azman; Pant, Shashank; Cho, Eunjoo; Zhu, Jin Xin; Garner, Alastair; Ohyama, Tomoko; Tajkhorshid, Emad; van Meyel, Donald J; Ryan, Renae M | The Journal of clinical investigation | 35167492 | 2022 Apr 01 |
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| A Proximal-to-Distal Survey of Healthy Adult Human Small Intestine and Colon Epithelium by Single-Cell Transcriptomics. | Burclaff, Joseph; Bliton, R Jarrett; Breau, Keith A; Ok, Meryem T; Gomez-Martinez, Ismael; Ranek, Jolene S; Bhatt, Aadra P; Purvis, Jeremy E; Woosley, John T; Magness, Scott T | Cellular and molecular gastroenterology and hepatology | 35176508 | 2022 |
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| Prophylactic (R,S)-Ketamine Is Effective Against Stress-Induced Behaviors in Adolescent but Not Aged Mice. | Mastrodonato, Alessia; Pavlova, Ina; Kee, Noelle C; Pham, Van Anh; McGowan, Josephine C; Mann, J John; Denny, Christine A | The international journal of neuropsychopharmacology | 35229871 | 2022 06 21 |
| Physical properties of the cytoplasm modulate the rates of microtubule polymerization and depolymerization. | Molines, Arthur T; Lemière, Joël; Gazzola, Morgan; Steinmark, Ida Emilie; Edrington, Claire H; Hsu, Chieh-Ting; Real-Calderon, Paula; Suhling, Klaus; Goshima, Gohta; Holt, Liam J; Thery, Manuel; Brouhard, Gary J; Chang, Fred | Developmental cell | 35231427 | 2022 02 28 |
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| Complete Genome Sequence of Clostridium cadaveris IFB3C5, Isolated from a Human Colonic Adenocarcinoma. | McGlinchey, Adam S; Zepeda-Rivera, Martha A; Stepanovica, Marija; Baryiames, Alexander A; Jones, Dakota S; LaCourse, Kaitlyn D; Bullman, Susan; Johnston, Christopher D | Microbiology resource announcements | 35234492 | 2022 Mar 17 |
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| Use of liquid lithography to form in vitro intestinal crypts with varying microcurvature surrounding the stem cell niche. | Logan Howard, R; Wang, Yuli; Allbritton, Nancy L | Journal of micromechanics and microengineering : structures, devices, and systems | 35241878 | 2021 Dec |
| Complete Genome Sequence of Morganella morganii CTX51T, Isolated from a Human Cecal Adenocarcinoma. | Stepanovica, Marija; Zepeda-Rivera, Martha A; McGlinchey, Adam S; Baryiames, Alexander A; Jones, Dakota S; LaCourse, Kaitlyn D; Bullman, Susan; Johnston, Christopher D | Microbiology resource announcements | 35254123 | 2022 Apr 21 |
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| Total-body PET/CT - First Clinical Experiences and Future Perspectives. | Ng, Quinn Kwan-Tai; Triumbari, Elizabeth Katherine Anna; Omidvari, Negar; Cherry, Simon R; Badawi, Ramsey D; Nardo, Lorenzo | Seminars in nuclear medicine | 35272853 | 2022 May |
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| Spatial CRISPR genomics identifies regulators of the tumor microenvironment. | Dhainaut, Maxime; Rose, Samuel A; Akturk, Guray; Wroblewska, Aleksandra; Nielsen, Sebastian R; Park, Eun Sook; Buckup, Mark; Roudko, Vladimir; Pia, Luisanna; Sweeney, Robert; Le Berichel, Jessica; Wilk, C Matthias; Bektesevic, Anela; Lee, Brian H; Bhardwaj, Nina; Rahman, Adeeb H; Baccarini, Alessia; Gnjatic, Sacha; Pe'er, Dana; Merad, Miriam; Brown, Brian D | Cell | 35290801 | 2022 Mar 31 |
| Barriers to and Facilitators for Acceptance of Comprehensive Clinical Decision Support System-Driven Care Maps for Patients With Thoracic Trauma: Interview Study Among Health Care Providers and Nurses. | Jones, Emma K; Banks, Alyssa; Melton, Genevieve B; Porta, Carolyn M; Tignanelli, Christopher J | JMIR human factors | 35293873 | 2022 Mar 16 |
| Xist spatially amplifies SHARP/SPEN recruitment to balance chromosome-wide silencing and specificity to the X chromosome. | Jachowicz, Joanna W; Strehle, Mackenzie; Banerjee, Abhik K; Blanco, Mario R; Thai, Jasmine; Guttman, Mitchell | Nature structural & molecular biology | 35301492 | 2022 Mar |
| ABCDs of the Relative Contributions of Pseudomonas aeruginosa Quorum Sensing Systems to Virulence in Diverse Nonvertebrate Hosts. | Vasquez-Rifo, Alejandro; Cook, Jamie; McEwan, Deborah L; Shikara, Dania; Ausubel, Frederick M; Di Cara, Francesca; Cheng, Zhenyu | mBio | 35311532 | 2022 04 26 |
| Optogenetic Stimulation of Midbrain Dopamine Neurons Produces Striatal Serotonin Release. | Dagher, Merel; Perrotta, Katie A; Erwin, Sara A; Hachisuka, Ayaka; Iyer, Rahul; Masmanidis, Sotiris C; Yang, Hongyan; Andrews, Anne M | ACS chemical neuroscience | 35312275 | 2022 04 06 |
| Bite-size introduction to canine hematologic malignancies. | Atherton, Matthew J; Mason, Nicola J | Blood advances | 35316831 | 2022 07 12 |
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| Recent advances in the diagnosis and prognosis of amyotrophic lateral sclerosis. | Goutman, Stephen A; Hardiman, Orla; Al-Chalabi, Ammar; Chió, Adriano; Savelieff, Masha G; Kiernan, Matthew C; Feldman, Eva L | The Lancet. Neurology | 35334233 | 2022 05 |
| Emerging insights into the complex genetics and pathophysiology of amyotrophic lateral sclerosis. | Goutman, Stephen A; Hardiman, Orla; Al-Chalabi, Ammar; Chió, Adriano; Savelieff, Masha G; Kiernan, Matthew C; Feldman, Eva L | The Lancet. Neurology | 35334234 | 2022 05 |
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| Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells. | Jiang, Connie L; Goyal, Yogesh; Jain, Naveen; Wang, Qiaohong; Truitt, Rachel E; Coté, Allison J; Emert, Benjamin; Mellis, Ian A; Kiani, Karun; Yang, Wenli; Jain, Rajan; Raj, Arjun | Genome biology | 35382863 | 2022 Apr 05 |
| Rational Design of Silicon-Based Zinc Ionophores. | Yamada, Kei; Deb, Arghya; Shoba, Veronika M; Lim, Donghyun; Maji, Basudeb; Modell, Ashley E; Choudhary, Amit | Angewandte Chemie (International ed. in English) | 35385189 | 2022 Jun 07 |
| Z-α1-antitrypsin polymers impose molecular filtration in the endoplasmic reticulum after undergoing phase transition to a solid state. | Chambers, Joseph E; Zubkov, Nikita; Kubánková, Markéta; Nixon-Abell, Jonathon; Mela, Ioanna; Abreu, Susana; Schwiening, Max; Lavarda, Giulia; López-Duarte, Ismael; Dickens, Jennifer A; Torres, Tomás; Kaminski, Clemens F; Holt, Liam J; Avezov, Edward; Huntington, James A; George-Hyslop, Peter St; Kuimova, Marina K; Marciniak, Stefan J | Science advances | 35394846 | 2022 Apr 08 |
| The context-dependent, combinatorial logic of BMP signaling. | Klumpe, Heidi E; Langley, Matthew A; Linton, James M; Su, Christina J; Antebi, Yaron E; Elowitz, Michael B | Cell systems | 35421361 | 2022 May 18 |
| Ligand-receptor promiscuity enables cellular addressing. | Su, Christina J; Murugan, Arvind; Linton, James M; Yeluri, Akshay; Bois, Justin; Klumpe, Heidi; Langley, Matthew A; Antebi, Yaron E; Elowitz, Michael B | Cell systems | 35421362 | 2022 05 18 |
| Silver nanoparticle on zinc oxide array for label-free detection of opioids through surface-enhanced raman spectroscopy. | Zhang, Michael; Jin, Congran; Nie, Yuan; Ren, Yundong; Hao, Nanjing; Xu, Zhe; Dong, Lin; Zhang, John X J | RSC advances | 35423637 | 2021 Mar 16 |
| Tuning the Sensitivity of Genetically Encoded Fluorescent Potassium Indicators through Structure-Guided and Genome Mining Strategies. | Torres Cabán, Cristina C; Yang, Minghan; Lai, Cuixin; Yang, Lina; Subach, Fedor V; Smith, Brian O; Piatkevich, Kiryl D; Boyden, Edward S | ACS sensors | 35427452 | 2022 05 27 |
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| Hippo Signaling Pathway Activation during SARS-CoV-2 Infection Contributes to Host Antiviral Response. | Garcia, Gustavo; Wang, Yijie; Irudayam, Joseph Ignatius; Jeyachandran, Arjit Vijey; Cario, Sebastian Castillo; Sen, Chandani; Li, Shen; Li, Yunfeng; Kumar, Ashok; Nielsen-Saines, Karin; French, Samuel W; Shah, Priya S; Morizono, Kouki; Gomperts, Brigitte; Deb, Arjun; Ramaiah, Arunachalam; Arumugaswami, Vaithilingaraja | bioRxiv : the preprint server for biology | 35441167 | 2022 Apr 08 |
| TRPV4: En RhoA To a Cure? | Lu, Qun; Chen, Yan-Hua | BioEssays : news and reviews in molecular, cellular and developmental biology | 35441721 | 2022 06 |
| Three Mutations Convert the Selectivity of a Protein Sensor from Nicotinic Agonists to S-Methadone for Use in Cells, Organelles, and Biofluids. | Muthusamy, Anand K; Kim, Charlene H; Virgil, Scott C; Knox, Hailey J; Marvin, Jonathan S; Nichols, Aaron L; Cohen, Bruce N; Dougherty, Dennis A; Looger, Loren L; Lester, Henry A | Journal of the American Chemical Society | 35446570 | 2022 05 18 |
| Circadian disruption of hippocampus in an early senescence male mouse model. | Davis, Jennifer A; Paul, Jodi R; Mokashi, Mugdha V; Yates, Stefani A; Mount, Daniel J; Munir, Hira A; Goode, Lacy K; Young, Martin E; Allison, David B; Gamble, Karen L | Pharmacology, biochemistry, and behavior | 35447158 | 2022 06 |
| Central memory T cells are the most effective precursors of resident memory T cells in human skin. | Matos, Tiago R; Gehad, Ahmed; Teague, Jessica E; Dyring-Andersen, Beatrice; Benezeder, Theresa; Dowlatshahi, Mitra; Crouch, Jack; Watanabe, Yoshinori; O'Malley, John T; Kupper, Thomas S; Yang, Chao; Watanabe, Rei; Clark, Rachael A | Science immunology | 35452256 | 2022 04 22 |
| Structural and functional impact by SARS-CoV-2 Omicron spike mutations. | Zhang, Jun; Cai, Yongfei; Lavine, Christy L; Peng, Hanqin; Zhu, Haisun; Anand, Krishna; Tong, Pei; Gautam, Avneesh; Mayer, Megan L; Rits-Volloch, Sophia; Wang, Shaowei; Sliz, Piotr; Wesemann, Duane R; Yang, Wei; Seaman, Michael S; Lu, Jianming; Xiao, Tianshu; Chen, Bing | Cell reports | 35452593 | 2022 04 26 |
| Genomewide CRISPR knockout screen identified PLAC8 as an essential factor for SADS-CoVs infection. | Tse, Longping V; Meganck, Rita M; Araba, Kenza C; Yount, Boyd L; Shaffer, Kendall M; Hou, Yixuan J; Munt, Jennifer E; Adams, Lily E; Wykoff, Jason A; Morowitz, Jeremy M; Dong, Stephanie; Magness, Scott T; Marzluff, William F; Gonzalez, Liara M; Ehre, Camille; Baric, Ralph S | Proceedings of the National Academy of Sciences of the United States of America | 35476513 | 2022 May 03 |
| The Giardia ventrolateral flange is a lamellar membrane protrusion that supports attachment. | Hardin, William R; Alas, Germain C M; Taparia, Nikita; Thomas, Elizabeth B; Steele-Ogus, Melissa C; Hvorecny, Kelli L; Halpern, Aaron R; Tůmová, Pavla; Kollman, Justin M; Vaughan, Joshua C; Sniadecki, Nathan J; Paredez, Alexander R | PLoS pathogens | 35482847 | 2022 Apr |
| Functional genetic screen identifies ITPR3/calcium/RELB axis as a driver of colorectal cancer metastatic liver colonization. | Moy, Ryan H; Nguyen, Alexander; Loo, Jia Min; Yamaguchi, Norihiro; Kajba, Christina M; Santhanam, Balaji; Ostendorf, Benjamin N; Wu, Y Gloria; Tavazoie, Saeed; Tavazoie, Sohail F | Developmental cell | 35487218 | 2022 05 09 |
| A planar culture model of human absorptive enterocytes reveals metformin increases fatty acid oxidation and export. | Gomez-Martinez, Ismael; Bliton, R Jarrett; Breau, Keith A; Czerwinski, Michael J; Williamson, Ian A; Wen, Jia; Rawls, John F; Magness, Scott T | Cellular and molecular gastroenterology and hepatology | 35489715 | 2022 Apr 27 |
| Macroautophagy in CNS health and disease. | Griffey, Christopher J; Yamamoto, Ai | Nature reviews. Neuroscience | 35505254 | 2022 Jul |
| Cortical basis for skilled vocalization. | Cerkevich, Christina M; Rathelot, Jean-Alban; Strick, Peter L | Proceedings of the National Academy of Sciences of the United States of America | 35507879 | 2022 May 10 |
| Plasmonic nanosensors for point-of-care biomarker detection. | Jin, Congran; Wu, Ziqian; Molinski, John H; Zhou, Junhu; Ren, Yundong; Zhang, John X J | Materials today. Bio | 35514435 | 2022 Mar |
| Efficient transgenesis and homology-directed gene targeting in monolayers of primary human small intestinal and colonic epithelial stem cells. | Breau, Keith A; Ok, Meryem T; Gomez-Martinez, Ismael; Burclaff, Joseph; Kohn, Nathan P; Magness, Scott T | Stem cell reports | 35523179 | 2022 Apr 25 |
| Total-Body 18F-FDG PET/CT in Autoimmune Inflammatory Arthritis at Ultra-Low Dose: Initial Observations. | Abdelhafez, Yasser; Raychaudhuri, Siba P; Mazza, Dario; Sarkar, Soumajyoti; Hunt, Heather L; McBride, Kristin; Nguyen, Mike; Caudle, Denise T; Spencer, Benjamin A; Omidvari, Negar A; Bang, Heejung; Cherry, Simon R; Nardo, Lorenzo; Badawi, Ramsey Derek; Chaudhari, Abhijit J | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 35589405 | 2022 May 19 |
| Under the magnifying glass: The ups and downs of rDNA copy number. | Kindelay, Selina M; Maggert, Keith A | Seminars in cell & developmental biology | 35595601 | 2022 May 18 |
| Relating18F-FDG image signal-to-noise ratio to time-of-flight noise-equivalent count rate in total-body PET using the uEXPLORER scanner. | Leung, Edwin K; Abdelhafez, Yasser G; Berg, Eric; Xie, Zhaoheng; Zhang, Xuezhu; Bayerlein, Reimund; Spencer, Benjamin; Li, Elizabeth; Omidvari, Negar; Selfridge, Aaron; Cherry, Simon R; Qi, Jinyi; Badawi, Ramsey D | Physics in medicine and biology | 35609588 | 2022 06 10 |
| Transcription factor Acj6 controls dendrite targeting via a combinatorial cell-surface code. | Xie, Qijing; Li, Jiefu; Li, Hongjie; Udeshi, Namrata D; Svinkina, Tanya; Orlin, Daniel; Kohani, Sayeh; Guajardo, Ricardo; Mani, D R; Xu, Chuanyun; Li, Tongchao; Han, Shuo; Wei, Wei; Shuster, S Andrew; Luginbuhl, David J; Quake, Stephen R; Murthy, Swetha E; Ting, Alice Y; Carr, Steven A; Luo, Liqun | Neuron | 35613619 | 2022 Jul 20 |
| Laser particle activated cell sorting in microfluidics. | Dannenberg, Paul H; Kang, Jisoo; Martino, Nicola; Kashiparekh, Anokhi; Forward, Sarah; Wu, Jiamin; Liapis, Andreas C; Wang, Jie; Yun, Seok-Hyun | Lab on a chip | 35621381 | 2022 06 14 |
| Induction of synapse formation by de novo neurotransmitter synthesis. | Burlingham, Scott R; Wong, Nicole F; Peterkin, Lindsay; Lubow, Lily; Dos Santos Passos, Carolina; Benner, Orion; Ghebrial, Michael; Cast, Thomas P; Xu-Friedman, Matthew A; Südhof, Thomas C; Chanda, Soham | Nature communications | 35650274 | 2022 06 01 |
| The DNA glycosylase NEIL2 plays a vital role in combating SARS-CoV-2 infection. | Hazra, Tapas; Tapryal, Nisha; Chakraborty, Anirban; Rayavara, Kempaiah; Wakamiya, Maki; Islam, Azharul; Pan, Lang; Hsu, Jason; Tat, Vivian; Maruyama, Junki; Hosoki, Koa; Sayed, Ibrahim; Alcantara, Joshua; Castillo, Vanessa; Tindle, Courtney; Sarker, Altaf; Cardenas, Victor; Sharma, Gulshan; Alexander, Laura Crotty; Sur, Sanjiv; Ghosh, Gourisankar; Paessler, Slobodan; Sahoo, Debashis; Ghosh, Pradipta; Das, Soumita; Boldogh, Istvan; Tseng, Chien-Te | Research square | 35665009 | 2022 May 27 |
| Accumulation of endosymbiont genomes in an insect autosome followed by endosymbiont replacement. | Tvedte, Eric S; Gasser, Mark; Zhao, Xuechu; Tallon, Luke J; Sadzewicz, Lisa; Bromley, Robin E; Chung, Matthew; Mattick, John; Sparklin, Benjamin C; Dunning Hotopp, Julie C | Current biology : CB | 35671755 | 2022 Jun 20 |
| Active genetics comes alive: Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives): Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives). | Gantz, Valentino M; Bier, Ethan | BioEssays : news and reviews in molecular, cellular and developmental biology | 35686327 | 2022 08 |
| Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder. | Lim, Elaine T; Chan, Yingleong; Dawes, Pepper; Guo, Xiaoge; Erdin, Serkan; Tai, Derek J C; Liu, Songlei; Reichert, Julia M; Burns, Mannix J; Chan, Ying Kai; Chiang, Jessica J; Meyer, Katharina; Zhang, Xiaochang; Walsh, Christopher A; Yankner, Bruce A; Raychaudhuri, Soumya; Hirschhorn, Joel N; Gusella, James F; Talkowski, Michael E; Church, George M | Nature communications | 35688811 | 2022 06 10 |
| NUP62 localizes to ALS/FTLD pathological assemblies and contributes to TDP-43 insolubility. | Gleixner, Amanda M; Verdone, Brandie Morris; Otte, Charlton G; Anderson, Eric N; Ramesh, Nandini; Shapiro, Olivia R; Gale, Jenna R; Mauna, Jocelyn C; Mann, Jacob R; Copley, Katie E; Daley, Elizabeth L; Ortega, Juan A; Cicardi, Maria Elena; Kiskinis, Evangelos; Kofler, Julia; Pandey, Udai B; Trotti, Davide; Donnelly, Christopher J | Nature communications | 35697676 | 2022 Jun 13 |
| mirTarRnaSeq: An R/Bioconductor Statistical Package for miRNA-mRNA Target Identification and Interaction Analysis. | Movassagh, Mercedeh; Morton, Sarah U; Hehnly, Christine; Smith, Jasmine; Doan, Trang T; Irizarry, Rafael; Broach, James R; Schiff, Steven J; Bailey, Jeffrey A; Paulson, Joseph N | BMC genomics | 35698050 | 2022 Jun 13 |
| Neuroligin-3 confines AMPA receptors into nanoclusters, thereby controlling synaptic strength at the calyx of Held synapses. | Han, Ying; Cao, Ran; Qin, Liming; Chen, Lulu Y; Tang, Ai-Hui; Südhof, Thomas C; Zhang, Bo | Science advances | 35704570 | 2022 Jun 17 |
| Live analysis of position-effect variegation in Drosophila reveals different modes of action for HP1a and Su(var)3-9. | Bughio, Farah J; Maggert, Keith A | Proceedings of the National Academy of Sciences of the United States of America | 35704756 | 2022 06 21 |
| Systematically quantifying morphological features reveals constraints on organoid phenotypes. | Beck, Lauren E; Lee, Jasmine; Coté, Christopher; Dunagin, Margaret C; Lukonin, Ilya; Salla, Nikkita; Chang, Marcello K; Hughes, Alex J; Mornin, Joseph D; Gartner, Zev J; Liberali, Prisca; Raj, Arjun | Cell systems | 35705097 | 2022 Jul 20 |
| PET/CT imaging of CSF1R in a mouse model of tuberculosis. | Foss, Catherine A; Ordonez, Alvaro A; Naik, Ravi; Das, Deepankar; Hall, Andrew; Wu, Yunkou; Dannals, Robert F; Jain, Sanjay K; Pomper, Martin G; Horti, Andrew G | European journal of nuclear medicine and molecular imaging | 35713665 | 2022 Jun 17 |
| Posttranslational modifications optimize the ability of SARS-CoV-2 spike for effective interaction with host cell receptors. | Kapoor, Karan; Chen, Tianle; Tajkhorshid, Emad | Proceedings of the National Academy of Sciences of the United States of America | 35737823 | 2022 Jul 12 |
| Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH. | Fang, Rongxin; Xia, Chenglong; Close, Jennie L; Zhang, Meng; He, Jiang; Huang, Zhengkai; Halpern, Aaron R; Long, Brian; Miller, Jeremy A; Lein, Ed S; Zhuang, Xiaowei | Science (New York, N.Y.) | 35771910 | 2022 07 |
| A natural fusion of flavodiiron, rubredoxin, and rubredoxin oxidoreductase domains is a self-sufficient water-forming oxidase of Trichomonas vaginalis. | Abdulaziz, Evana N; Bell, Tristan A; Rashid, Bazlur; Heacock, Mina L; Begic, Tarik; Skinner, Owen S; Yaseen, Mohammad A; Chao, Luke H; Mootha, Vamsi K; Pierik, Antonio J; Cracan, Valentin | The Journal of biological chemistry | 35780837 | 2022 08 |
| Isolation and Processing of Murine White Adipocytes for Transcriptome and Epigenome Analyses. | Yang, Chih-Hsiang; Longinotto, John; Panzeri, Ilaria; Arrigoni, Laura; Wegert, Vanessa; Heyne, Steffen; Seifert, Gabriel; Lempradl, Adelheid; Bönisch, Ulrike; Pospisilik, John Andrew | Journal of visualized experiments : JoVE | 35786676 | 2022 06 16 |
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| Allelic correlation is a marker of trade-offs between barriers to transmission of expression variability and signal responsiveness in genetic networks. | Boe, Ryan H; Ayyappan, Vinay; Schuh, Lea; Raj, Arjun | Cell systems | 36450286 | 2022 Dec 21 |
| An in silico method to assess antibody fragment polyreactivity. | Harvey, Edward P; Shin, Jung-Eun; Skiba, Meredith A; Nemeth, Genevieve R; Hurley, Joseph D; Wellner, Alon; Shaw, Ada Y; Miranda, Victor G; Min, Joseph K; Liu, Chang C; Marks, Debora S; Kruse, Andrew C | Nature communications | 36477674 | 2022 Dec 07 |
| Nuclear import receptors are recruited by FG-nucleoporins to rescue hallmarks of TDP-43 proteinopathy. | Khalil, Bilal; Chhangani, Deepak; Wren, Melissa C; Smith, Courtney L; Lee, Jannifer H; Li, Xingli; Puttinger, Christian; Tsai, Chih-Wei; Fortin, Gael; Morderer, Dmytro; Gao, Junli; Liu, Feilin; Lim, Chun Kim; Chen, Jingjiao; Chou, Ching-Chieh; Croft, Cara L; Gleixner, Amanda M; Donnelly, Christopher J; Golde, Todd E; Petrucelli, Leonard; Oskarsson, Björn; Dickson, Dennis W; Zhang, Ke; Shorter, James; Yoshimura, Shige H; Barmada, Sami J; Rincon-Limas, Diego E; Rossoll, Wilfried | Molecular neurodegeneration | 36482422 | 2022 Dec 08 |
| Cryo-EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms. | Le, Le Thi My; Thompson, James Robert; Dehghani-Ghahnaviyeh, Sepehr; Pant, Shashank; Dang, Phuoc Xuan; French, Jarrod Bradley; Kanikeyo, Takahisa; Tajkhorshid, Emad; Alam, Amer | The EMBO journal | 36484366 | 2023 Feb 01 |
| Synthetic cytokine circuits that drive T cells into immune-excluded tumors. | Allen, Greg M; Frankel, Nicholas W; Reddy, Nishith R; Bhargava, Hersh K; Yoshida, Maia A; Stark, Sierra R; Purl, Megan; Lee, Jungmin; Yee, Jacqueline L; Yu, Wei; Li, Aileen W; Garcia, K Christopher; El-Samad, Hana; Roybal, Kole T; Spitzer, Matthew H; Lim, Wendell A | Science (New York, N.Y.) | 36520915 | 2022 Dec 16 |
| pH-Responsive Charge-Conversion Progelator Peptides. | Carlini, Andrea S; Choi, Wonmin; McCallum, Naneki C; Gianneschi, Nathan C | Advanced functional materials | 36530181 | 2021 Mar 24 |
| Fluorescence Screens for Identifying Central Nervous System-Acting Drug-Biosensor Pairs for Subcellular and Supracellular Pharmacokinetics. | Beatty, Zoe G; Muthusamy, Anand K; Unger, Elizabeth K; Dougherty, Dennis A; Tian, Lin; Looger, Loren L; Shivange, Amol V; Bera, Kallol; Lester, Henry A; Nichols, Aaron L | Bio-protocol | 36532688 | 2022 Nov 20 |
| Systems Biology Analysis of Temporal Dynamics That Govern Endothelial Response to Cyclic Stretch. | Lai, Michael W; Chow, Nathan; Checco, Antonio; Kunar, Balvir; Redmond, David; Rafii, Shahin; Rabbany, Sina Y | Biomolecules | 36551265 | 2022 Dec 08 |
| A genome-wide CRISPR screen identifies WDFY3 as a regulator of macrophage efferocytosis. | Shi, Jianting; Wu, Xun; Wang, Ziyi; Li, Fang; Meng, Yujiao; Moore, Rebecca M; Cui, Jian; Xue, Chenyi; Croce, Katherine R; Yurdagul Jr, Arif; Doench, John G; Li, Wei; Zarbalis, Konstantinos S; Tabas, Ira; Yamamoto, Ai; Zhang, Hanrui | Nature communications | 36566259 | 2022 Dec 24 |
| Differential dynamics and direct interaction of bound ligands with lipids in multidrug transporter ABCG2. | Rasouli, Ali; Yu, Qin; Dehghani-Ghahnaviyeh, Sepehr; Wen, Po-Chao; Kowal, Julia; Locher, Kaspar P; Tajkhorshid, Emad | Proceedings of the National Academy of Sciences of the United States of America | 36580587 | 2023 Jan 03 |
| Bayesian semiparametric Markov renewal mixed models for vocalization syntax. | Wu, Yutong; Jarvis, Erich D; Sarkar, Abhra | Biostatistics (Oxford, England) | 36583955 | 2022 Dec 30 |
| Recording of cellular physiological histories along optically readable self-assembling protein chains. | Linghu, Changyang; An, Bobae; Shpokayte, Monika; Celiker, Orhan T; Shmoel, Nava; Zhang, Ruihan; Zhang, Chi; Park, Demian; Park, Won Min; Ramirez, Steve; Boyden, Edward S | Nature biotechnology | 36593405 | 2023 May |
| Helicobacter pylori Chronic Infection Selects for Effective Colonizers of Metaplastic Glands. | O'Brien, V P; Jackson, L K; Frick, J P; Rodriguez Martinez, A E; Jones, D S; Johnston, C D; Salama, N R | mBio | 36598261 | 2023 Feb 28 |
| Tuning phenylalanine fluorination to assess aromatic contributions to protein function and stability in cells. | Galles, Grace D; Infield, Daniel T; Clark, Colin J; Hemshorn, Marcus L; Manikandan, Shivani; Fazan, Frederico; Rasouli, Ali; Tajkhorshid, Emad; Galpin, Jason D; Cooley, Richard B; Mehl, Ryan A; Ahern, Christopher A | Nature communications | 36599844 | 2023 Jan 04 |
| Role of MEF2C in the Endothelial Cells Derived from Human Induced Pluripotent Stem Cells. | Li, Tao; Conroy, Kelsey L; Kim, Amy M; Halmai, Julian; Gao, Kewa; Moreno, Emily; Wang, Aijun; Passerini, Anthony G; Nolta, Jan A; Zhou, Ping | Stem cells (Dayton, Ohio) | 36639926 | 2023 Apr 25 |
| Variable selection with multiply-imputed datasets: choosing between stacked and grouped methods. | Du, Jiacong; Boss, Jonathan; Han, Peisong; Beesley, Lauren J; Kleinsasser, Michael; Goutman, Stephen A; Batterman, Stuart; Feldman, Eva L; Mukherjee, Bhramar | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 36644406 | 2022 |
| Mechanisms That Underlie Expression of Estradiol-Induced Excitatory Synaptic Potentiation in the Hippocampus Differ between Males and Females. | Jain, Anant; Woolley, Catherine S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 36650060 | 2023 Feb 22 |
| Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. | Kim, Tae-Wuk; Park, Chan Ho; Hsu, Chuan-Chih; Kim, Yeong-Woo; Ko, Yeong-Woo; Zhang, Zhenzhen; Zhu, Jia-Ying; Hsiao, Yu-Chun; Branon, Tess; Kaasik, Krista; Saldivar, Evan; Li, Kevin; Pasha, Asher; Provart, Nicholas J; Burlingame, Alma L; Xu, Shou-Ling; Tin | The Plant cell | 36660928 | 2023 Mar 15 |
| Ozone Disinfection for Elimination of Bacteria and Degradation of SARS-CoV2 RNA for Medical Environments. | Westover, Craig; Rahmatulloev, Savlatjon; Danko, David; Afshin, Evan E; O'Hara, Niamh B; Ounit, Rachid; Bezdan, Daniela; Mason, Christopher E | Genes | 36672826 | 2022 Dec 28 |
| Differential Susceptibility of Fetal Retinal Pigment Epithelial Cells, hiPSC- Retinal Stem Cells, and Retinal Organoids to Zika Virus Infection. | Contreras, Deisy; Garcia Jr, Gustavo; Jones, Melissa Kaye; Martinez, Laura E; Jayakarunakaran, Akshaya; Gangalapudi, Vineela; Tang, Jie; Wu, Ying; Zhao, Jiagang J; Chen, Zhaohui; Ramaiah, Arunachalam; Tsui, Irena; Kumar, Ashok; Nielsen-Saines, Karin; Wang, Shaomei; Arumugaswami, Vaithilingaraja | Viruses | 36680182 | 2023 Jan 01 |
| Metabolism, homeostasis, and aging. | Moldakozhayev, Alibek; Gladyshev, Vadim N | Trends in endocrinology and metabolism: TEM | 36681595 | 2023 Mar |
| Phase Separation in Biology and Disease; Current Perspectives and Open Questions. | Boeynaems, Steven; Chong, Shasha; Gsponer, Jörg; Holt, Liam; Milovanovic, Dragomir; Mitrea, Diana M; Mueller-Cajar, Oliver; Portz, Bede; Reilly, John F; Reinkemeier, Christopher D; Sabari, Benjamin R; Sanulli, Serena; Shorter, James; Sontag, Emily; Strader, Lucia; Stachowiak, Jeanne; Weber, Stephanie C; White, Michael; Zhang, Huaiying; Zweckstetter, Markus; Elbaum-Garfinkle, Shana; Kriwacki, Richard | Journal of molecular biology | 36690068 | 2023 Mar 01 |
| An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype. | Shah, Parisha P; Keough, Kathleen C; Gjoni, Ketrin; Santini, Garrett T; Abdill, Richard J; Wickramasinghe, Nadeera M; Dundes, Carolyn E; Karnay, Ashley; Chen, Angela; Salomon, Rachel E A; Walsh, Patrick J; Nguyen, Son C; Whalen, Sean; Joyce, Eric F; Loh, Kyle M; Dubois, Nicole; Pollard, Katherine S; Jain, Rajan | Genome biology | 36691074 | 2023 Jan 23 |
| A modified Michaelis-Menten equation estimates growth from birth to 3 years in healthy babies in the US. | Walters, William; Ley, Catherine; Hastie, Trevor; Ley, Ruth; Parsonnet, Julie | Research square | 36711501 | 2023 Jun 22 |
| Increased mesoscale diffusivity in response to acute glucose starvation. | Xie, Ying; Gresham, David; Holt, Liam | bioRxiv : the preprint server for biology | 36711511 | 2023 Jan 12 |
| Broad-spectrum antiviral inhibitors targeting pandemic potential RNA viruses. | Garcia, Gustavo; Irudayam, Joseph Ignatius; Jeyachandran, Arjit Vijay; Dubey, Swati; Chang, Christina; Cario, Sebastian Castillo; Price, Nate; Arumugam, Sathya; Marquez, Angelica L; Shah, Aayushi; Fanaei, Amir; Chakravarty, Nikhil; Joshi, Shantanu; Sinha, Sanjeev; French, Samuel W; Parcells, Mark; Ramaiah, Arunachalam; Arumugaswami, Vaithilingaraja | bioRxiv : the preprint server for biology | 36711787 | 2023 Jan 20 |
| Design of 8-mer Peptides that Block Clostridioides difficile Toxin A in Intestinal Cells. | Sarma, Sudeep; Catella, Carly M; Pedro, Ellyce T San; Xiao, Xingqing; Durmusoglu, Deniz; Menegatti, Stefano; Crook, Nathan; Magness, Scott T; Hall, Carol K | bioRxiv : the preprint server for biology | 36711911 | 2023 Jan 12 |
| NOVA1 acts on Impact to regulate hypothalamic function and translation in inhibitory neurons. | Tajima, Yoko; Ito, Keiichi; Yuan, Yuan; Frank, Mayu O; Saito, Yuhki; Darnell, Robert B | Cell reports | 36716149 | 2023 Feb 28 |
| A trypanosome-derived immunotherapeutics platform elicits potent high-affinity antibodies, negating the effects of the synthetic opioid fentanyl. | Triller, Gianna; Vlachou, Evi P; Hashemi, Hamidreza; van Straaten, Monique; Zeelen, Johan P; Kelemen, Yosip; Baehr, Carly; Marker, Cheryl L; Ruf, Sandra; Svirina, Anna; Chandra, Monica; Urban, Katharina; Gkeka, Anastasia; Kruse, Sebastian; Baumann, Andreas; Miller, Aubry K; Bartel, Marc; Pravetoni, Marco; Stebbins, C Erec; Papavasiliou, F Nina; Verdi, Joseph P | Cell reports | 36719797 | 2023 Feb 28 |
| The effect of a pharmaceutical ghrelin agonist on lifespan in C57BL/6J male mice: A controlled experiment. | Kaiser, Kathryn A; Kadish, Inga; van Groen, Thomas; Smith Jr, Daniel L; Dickinson, Stephanie; Henschel, Beate; Parker, Erik S; Brown, Andrew W; Allison, David B | Aging cell | 36734122 | 2023 Apr |
| SYF2 suppression mitigates neurodegeneration in models of diverse forms of ALS. | Linares, Gabriel R; Li, Yichen; Chang, Wen-Hsuan; Rubin-Sigler, Jasper; Mendonca, Stacee; Hong, Sarah; Eoh, Yunsun; Guo, Wenxuan; Huang, Yi-Hsuan; Chang, Jonathan; Tu, Sharon; Dorjsuren, Nomongo; Santana, Manuel; Hung, Shu-Ting; Yu, Johnny; Perez, Joscany; Chickering, Michael; Cheng, Tze-Yuan; Huang, Chi-Chou; Lee, Shih-Jong James; Deng, Hao-Jen; Bach, Kieu-Tram; Gray, Kamden; Subramanyam, Vishvak; Rosenfeld, Jeffrey; Alworth, Samuel V; Goodarzi, Hani; Ichida, Justin K | Cell stem cell | 36736291 | 2023 Feb 02 |
| Spin glasses, error correcting codes, and synchronization of human stem cell organoids. | Thomson, Matt | Cell | 36736298 | 2023 Feb 02 |
| High central venous pressure amplitude predicts successful defibrillation in a porcine model of cardiac arrest. | Balzer, Claudius; Eagle, Susan S; Yannopoulos, Demetris; Aufderheide, Tom P; Riess, Matthias L | Resuscitation | 36736947 | 2023 Apr |
| A leaky human colon model reveals uncoupled apical/basal cytotoxicity in early Clostridioides difficile toxin exposure. | Ok, Meryem T; Liu, Jintong; Bliton, R Jarrett; Hinesley, Caroline M; San Pedro, Ekaterina Ellyce T; Breau, Keith A; Gomez-Martinez, Ismael; Burclaff, Joseph; Magness, Scott T | American journal of physiology. Gastrointestinal and liver physiology | 36749911 | 2023 Apr 01 |
| PIKFYVE inhibition mitigates disease in models of diverse forms of ALS. | Hung, Shu-Ting; Linares, Gabriel R; Chang, Wen-Hsuan; Eoh, Yunsun; Krishnan, Gopinath; Mendonca, Stacee; Hong, Sarah; Shi, Yingxiao; Santana, Manuel; Kueth, Chuol; Macklin-Isquierdo, Samantha; Perry, Sarah; Duhaime, Sarah; Maios, Claudia; Chang, Jonathan; Perez, Joscany; Couto, Alexander; Lai, Jesse; Li, Yichen; Alworth, Samuel V; Hendricks, Eric; Wang, Yaoming; Zlokovic, Berislav V; Dickman, Dion K; Parker, J Alex; Zarnescu, Daniela C; Gao, Fen-Biao; Ichida, Justin K | Cell | 36754049 | 2023 Feb 16 |
| A new microphysiological system shows hypoxia primes human ISCs for interleukin-dependent rescue of stem cell activity. | Rivera, Kristina R; Bliton, R Jarrett; Burclaff, Joseph; Czerwinski, Michael J; Liu, Jintong; Trueblood, Jessica M; Hinesley, Caroline M; Breau, Keith A; Joshi, Shlok; Pozdin, Vladimir A; Yao, Ming; Ziegler, Amanda L; Blikslager, Anthony T; Daniele, Michael A; Magness, Scott T | bioRxiv : the preprint server for biology | 36778265 | 2023 Feb 01 |
| Crosstalk between the Rho and Rab family of small GTPases in neurodegenerative disorders. | Nik Akhtar, Shayan; Bunner, Wyatt P; Brennan, Elizabeth; Lu, Qun; Szatmari, Erzsebet M | Frontiers in cellular neuroscience | 36779014 | 2023 |
| Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale. | Mendelevich, Asia; Gupta, Saumya; Pakharev, Aleksei; Teodosiadis, Athanasios; Mironov, Andrey A; Gimelbrant, Alexander A | bioRxiv : the preprint server for biology | 36798258 | 2023 Feb 12 |
| Retrospective identification of intrinsic factors that mark pluripotency potential in rare somatic cells. | Jain, Naveen; Goyal, Yogesh; Dunagin, Margaret C; Cote, Christopher J; Mellis, Ian A; Emert, Benjamin; Jiang, Connie L; Dardani, Ian P; Reffsin, Sam; Raj, Arjun | bioRxiv : the preprint server for biology | 36798299 | 2023 Feb 10 |
| PNMA2 forms non-enveloped virus-like capsids that trigger paraneoplastic neurological syndrome. | Xu, Junjie; Erlendsson, Simon; Singh, Manvendra; Regier, Matthew; Ibiricu, Iosune; Day, Gregory S; Piquet, Amanda L; Clardy, Stacey L; Feschotte, Cedric; Briggs, John A G; Shepherd, Jason D | bioRxiv : the preprint server for biology | 36798413 | 2023 Feb 09 |
| Route-dependent spatial engram tagging in mouse dentate gyrus. | Wilmerding, Lucius K; Kondratyev, Ivan; Ramirez, Steve; Hasselmo, Michael E | Neurobiology of learning and memory | 36822466 | 2023 Apr |
| Deep ensemble learning enables highly accurate classification of stored red blood cell morphology. | Routt, Austin H; Yang, Natalia; Piety, Nathaniel Z; Lu, Madeleine; Shevkoplyas, Sergey S | Scientific reports | 36823298 | 2023 Feb 23 |
| Molecular Damage in Aging. | Gladyshev, Vadim N; Kritchevsky, Stephen B; Clarke, Steven G; Cuervo, Ana Maria; Fiehn, Oliver; de Magalhães, João Pedro; Mau, Theresa; Maes, Michal; Moritz, Robert; Niedernhofer, Laura J; Van Schaftingen, Emile; Tranah, Gregory J; Walsh, Kenneth; Yura, Yoshimitsu; Zhang, Bohan; Cummings, Steven R | Nature aging | 36846190 | 2021 Dec |
| Nondestructive 3D Pathology with Light-Sheet Fluorescence Microscopy for Translational Research and Clinical Assays. | Liu, Jonathan T C; Glaser, Adam K; Poudel, Chetan; Vaughan, Joshua C | Annual review of analytical chemistry (Palo Alto, Calif.) | 36854208 | 2023 Jun 14 |
| Selective Serotonin Reuptake Inhibitors within Cells: Temporal Resolution in Cytoplasm, Endoplasmic Reticulum, and Membrane. | Nichols, Aaron L; Blumenfeld, Zack; Luebbert, Laura; Knox, Hailey J; Muthusamy, Anand K; Marvin, Jonathan S; Kim, Charlene H; Grant, Stephen N; Walton, David P; Cohen, Bruce N; Hammar, Rebekkah; Looger, Loren; Artursson, Per; Dougherty, Dennis A; Lester, | The Journal of neuroscience : the official journal of the Society for Neuroscience | 36868853 | 2023 Mar 29 |
| oFlowSeq: a quantitative approach to identify protein coding mutations affecting cell type enrichment using mosaic CRISPR-Cas9 edited cerebral organoids. | Dawes, Pepper; Murray, Liam F; Olson, Meagan N; Barton, Nathaniel J; Smullen, Molly; Suresh, Madhusoodhanan; Yan, Guang; Zhang, Yucheng; Fernandez-Fontaine, Aria; English, Jay; Uddin, Mohammed; Pak, ChangHui; Church, George M; Chan, Yingleong; Lim, Elaine T | Human genetics | 36877372 | 2023 Mar 06 |
| Increased mesoscale diffusivity in response to acute glucose starvation. | Xie, Ying; Gresham, David; Holt, Liam J | microPublication biology | 36908311 | 2023 |
| Structural homology screens reveal poxvirus-encoded proteins impacting inflammasome-mediated defenses. | Boys, Ian N; Johnson, Alex G; Quinlan, Meghan; Kranzusch, Philip J; Elde, Nels C | bioRxiv : the preprint server for biology | 36909515 | 2023 Apr 03 |
| Four anti-aging drugs and calorie-restricted diet produce parallel effects in fat, brain, muscle, macrophages, and plasma of young mice. | Li, Xinna; McPherson, Madaline; Hager, Mary; Lee, Michael; Chang, Peter; Miller, Richard A | GeroScience | 36920743 | 2023 Mar 15 |
| The Family of Single-Case Experimental Designs. | Epstein, Leonard H; Dallery, Jesse | Harvard data science review | 36926648 | 2022 |
| Error-Correction Method for High-Throughput Sizing of Nanoscale Vesicles with Single-Molecule Localization Microscopy. | Jung, Seung-Ryoung; Kim, James; Vojtech, Lucia; Vaughan, Joshua C; Chiu, Daniel T | The journal of physical chemistry. B | 36944080 | 2023 Mar 30 |
| Epigenetic dosage identifies two major and functionally distinct β cell subtypes. | Dror, Erez; Fagnocchi, Luca; Wegert, Vanessa; Apostle, Stefanos; Grimaldi, Brooke; Gruber, Tim; Panzeri, Ilaria; Heyne, Steffen; Höffler, Kira Daniela; Kreiner, Victor; Ching, Reagan; Tsai-Hsiu Lu, Tess; Semwal, Ayush; Johnson, Ben; Senapati, Parijat; Lempradl, Adelheid; Schones, Dustin; Imhof, Axel; Shen, Hui; Pospisilik, John Andrew | Cell metabolism | 36948185 | 2023 May 02 |
| Autophagy at the synapse, an early site of dysfunction in neurodegeneration. | Jasutkar, Hilary Grosso; Yamamoto, Ai | Current opinion in physiology | 36968133 | 2023 Apr |
| Conserved transcription factors promote cell fate stability and restrict reprogramming potential in differentiated cells. | Missinato, Maria A; Murphy, Sean; Lynott, Michaela; Yu, Michael S; Kervadec, Anaïs; Chang, Yu-Ling; Kannan, Suraj; Loreti, Mafalda; Lee, Christopher; Amatya, Prashila; Tanaka, Hiroshi; Huang, Chun-Teng; Puri, Pier Lorenzo; Kwon, Chulan; Adams, Peter D; Qi | Nature communications | 36973293 | 2023 Mar 27 |
| Hematopoietic Somatic Mosaicism Is Associated With an Increased Risk of Postoperative Atrial Fibrillation. | Ninni, Sandro; Dombrowicz, David; Kuznetsova, Tanya; Vicario, Rocio; Gao, Vance; Molendi-Coste, Olivier; Haas, Joel; Woitrain, Eloise; Coisne, Augustin; Neele, Annette E; Prange, Koen; Willemsen, Lisa; Aghezzaf, Samy; Fragkogianni, Stamatina; Tazibet, Amine; Pineau, Laurent; White, James Robert; Eeckhoute, Jérôme; Koussa, Mohamed; Dubrulle, Henri; Juthier, Francis; Soquet, Jérôme; Vincentelli, André; Edme, Jean-Louis; de Winther, Menno; Geissmann, Frederic; Staels, Bart; Montaigne, David | Journal of the American College of Cardiology | 36990546 | 2023 Apr 04 |
| AlphaFold2 enables accurate deorphanization of ligands to single-pass receptors. | Danneskiold-Samsøe, Niels Banhos; Kavi, Deniz; Jude, Kevin M; Nissen, Silas Boye; Wat, Lianna W; Coassolo, Laetitia; Zhao, Meng; Santana-Oikawa, Galia Asae; Broido, Beatrice Blythe; Garcia, K Christopher; Svensson, Katrin J | bioRxiv : the preprint server for biology | 36993313 | 2023 Dec 15 |
| Stabilizing the return to normal behavior in an epidemic. | Berry, Tyrus; Ferrari, Matthew; Sauer, Timothy; Greybush, Steven J; Ebeigbe, Donald; Whalen, Andrew J; Schiff, Steven J | medRxiv : the preprint server for health sciences | 36993470 | 2023 May 22 |
| First-in-human immunoPET imaging of COVID-19 convalescent patients using dynamic total-body PET and a CD8-targeted minibody. | Omidvari, Negar; Jones, Terry; Price, Pat M; Ferre, April L; Lu, Jacqueline; Abdelhafez, Yasser G; Sen, Fatma; Cohen, Stuart H; Schmiedehausen, Kristin; Badawi, Ramsey D; Shacklett, Barbara L; Wilson, Ian; Cherry, Simon R | medRxiv : the preprint server for health sciences | 36993568 | 2023 Mar 20 |
| Engineered Escherichia coli for the in situ secretion of therapeutic nanobodies in the gut. | Lynch, Jason P; González-Prieto, Coral; Reeves, Analise Z; Bae, Sena; Powale, Urmila; Godbole, Neha P; Tremblay, Jacqueline M; Schmidt, Florian I; Ploegh, Hidde L; Kansra, Vikram; Glickman, Jonathan N; Leong, John M; Shoemaker, Charles B; Garrett, Wendy S | Cell host & microbe | 37003258 | 2023 Apr 12 |
| Receptor Elimination by E3 Ubiquitin Ligase Recruitment (REULR): A Targeted Protein Degradation Toolbox. | Siepe, Dirk H; Picton, Lora K; Garcia, K Christopher | ACS synthetic biology | 37011906 | 2023 Apr 21 |
| Germline-encoded amino acid-binding motifs drive immunodominant public antibody responses. | Shrock, Ellen L; Timms, Richard T; Kula, Tomasz; Mena, Elijah L; West Jr, Anthony P; Guo, Rui; Lee, I-Hsiu; Cohen, Alexander A; McKay, Lindsay G A; Bi, Caihong; Leng, Yumei; Fujimura, Eric; Horns, Felix; Li, Mamie; Wesemann, Duane R; Griffiths, Anthony; Gewurz, Benjamin E; Bjorkman, Pamela J; Elledge, Stephen J | Science (New York, N.Y.) | 37023193 | 2023 Apr 07 |
| Total-Body Multiparametric PET Quantification of 18 F-FDG Delivery and Metabolism in the Study of COVID-19 Recovery. | Wang, Yiran; Nardo, Lorenzo; Spencer, Benjamin A; Abdelhafez, Yasser G; Li, Elizabeth J; Omidvari, Negar; Chaudhari, Abhijit J; Badawi, Ramsey D; Jones, Terry; Cherry, Simon R; Wang, Guobao | medRxiv : the preprint server for health sciences | 37034643 | 2023 Mar 30 |
| Contextual modifiers of healthspan, lifespan, and epigenome in mice under chronic social stress. | Razzoli, Maria; Nyuyki-Dufe, Kewir; Chen, Brian H; Bartolomucci, Alessandro | Proceedings of the National Academy of Sciences of the United States of America | 37043532 | 2023 Apr 18 |
| Babesia duncani multi-omics identifies virulence factors and drug targets. | Singh, Pallavi; Lonardi, Stefano; Liang, Qihua; Vydyam, Pratap; Khabirova, Eleonora; Fang, Tiffany; Gihaz, Shalev; Thekkiniath, Jose; Munshi, Muhammad; Abel, Steven; Ciampossin, Loic; Batugedara, Gayani; Gupta, Mohit; Lu, Xueqing Maggie; Lenz, Todd; Chakravarty, Sakshar; Cornillot, Emmanuel; Hu, Yangyang; Ma, Wenxiu; Gonzalez, Luis Miguel; Sánchez, Sergio; Estrada, Karel; Sánchez-Flores, Alejandro; Montero, Estrella; Harb, Omar S; Le Roch, Karine G; Mamoun, Choukri Ben | Nature microbiology | 37055610 | 2023 May |
| Single-shot photoacoustic imaging with single-element transducer through a spatiotemporal encoder. | Zhao, Yanyu; Wang, Lihong V | Journal of biomedical optics | 37065647 | 2023 Apr |
| A rapid microglial metabolic response controls metabolism and improves memory. | Drougard, Anne; Ma, Eric H; Wegert, Vanessa; Sheldon, Ryan; Panzeri, Ilaria; Vatsa, Naman; Apostle, Stefanos; Fagnocchi, Luca; Schaf, Judith; Gossens, Klaus; Völker, Josephine; Pang, Shengru; Bremser, Anna; Dror, Erez; Giacona, Francesca; Sagar; Henderson, Michael X; Prinz, Marco; Jones, Russell G; Pospisilik, J Andrew | bioRxiv : the preprint server for biology | 37066282 | 2023 Apr 04 |
| Ancestral protein reconstruction reveals evolutionary events governing variation in Dicer helicase function. | Aderounmu, Adedeji M; Aruscavage, P Joseph; Kolaczkowski, Bryan; Bass, Brenda L | eLife | 37068011 | 2023 Apr 17 |
| Proximal tubule responses to injury: interrogation by single-cell transcriptomics. | Cippà, Pietro E; McMahon, Andrew P | Current opinion in nephrology and hypertension | 37074682 | 2023 Jul 01 |
| Exercise reprograms the inflammatory landscape of multiple stem cell compartments during mammalian aging. | Liu, Ling; Kim, Soochi; Buckley, Matthew T; Reyes, Jaime M; Kang, Jengmin; Tian, Lei; Wang, Mingqiang; Lieu, Alexander; Mao, Michelle; Rodriguez-Mateo, Cristina; Ishak, Heather D; Jeong, Mira; Wu, Joseph C; Goodell, Margaret A; Brunet, Anne; Rando, Thomas A | Cell stem cell | 37080206 | 2023 May 04 |
| The relaxin receptor RXFP1 signals through a mechanism of autoinhibition. | Erlandson, Sarah C; Rawson, Shaun; Osei-Owusu, James; Brock, Kelly P; Liu, Xinyue; Paulo, Joao A; Mintseris, Julian; Gygi, Steven P; Marks, Debora S; Cong, Xiaojing; Kruse, Andrew C | Nature chemical biology | 37081311 | 2023 Aug |
| Single-cell transcriptomics of a dynamic cell behavior in murine airways. | Kwok, Sheldon J J; Montoro, Daniel T; Haber, Adam L; Yun, Seok-Hyun; Vinarsky, Vladimir | eLife | 37083555 | 2023 Apr 21 |
| An R Shiny App for a Chronic Lower Back Pain Study, Personalized N-of-1 Trial. | Chandereng, Thevaa | Harvard data science review | 37091071 | 2022 |
| Advances in PET Diagnostics for Guiding Targeted Cancer Therapy and Studying In Vivo Cancer Biology. | Mankoff, David A; Pantel, Austin R; Viswanath, Varsha; Karp, Joel S | Current pathobiology reports | 37092138 | 2019 Sep |
| Condensation of LINE-1 is critical for retrotransposition. | Sil, Srinjoy; Keegan, Sarah; Ettefa, Farida; Denes, Lance T; Boeke, Jef D; Holt, Liam J | eLife | 37114770 | 2023 Apr 28 |
| High-Temporal-Resolution Lung Kinetic Modeling Using Total-Body Dynamic PET with Time-Delay and Dispersion Corrections. | Wang, Yiran; Spencer, Benjamin A; Schmall, Jeffrey; Li, Elizabeth; Badawi, Ramsey D; Jones, Terry; Cherry, Simon R; Wang, Guobao | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 37116916 | 2023 Jul |
| Innate immune pathway modulator screen identifies STING pathway activation as a strategy to inhibit multiple families of arbo and respiratory viruses. | Garcia Jr, Gustavo; Irudayam, Joseph Ignatius; Jeyachandran, Arjit Vijey; Dubey, Swati; Chang, Christina; Castillo Cario, Sebastian; Price, Nate; Arumugam, Sathya; Marquez, Angelica L; Shah, Aayushi; Fanaei, Amir; Chakravarty, Nikhil; Joshi, Shantanu; Sinha, Sanjeev; French, Samuel W; Parcells, Mark S; Ramaiah, Arunachalam; Arumugaswami, Vaithilingaraja | Cell reports. Medicine | 37119814 | 2023 May 16 |
| The environmental stress response regulates ribosome content in cell cycle-arrested S. cerevisiae. | Terhorst, Allegra; Sandikci, Arzu; Whittaker, Charles A; Szórádi, Tamás; Holt, Liam J; Neurohr, Gabriel E; Amon, Angelika | Frontiers in cell and developmental biology | 37123399 | 2023 |
| Macromolecular crowding limits growth under pressure. | Alric, Baptiste; Formosa-Dague, Cécile; Dague, Etienne; Holt, Liam J; Delarue, Morgan | Nature physics | 37152719 | 2022 Apr |
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| Disulfide bond in SUN2 regulates dynamic remodeling of LINC complexes at the nuclear envelope. | Sharma, Rahul; Hetzer, Martin W | Life science alliance | 37188462 | 2023 Aug |
| Engineered allostery in light-regulated LOV-Turbo enables precise spatiotemporal control of proximity labeling in living cells. | Lee, Song-Yi; Cheah, Joleen S; Zhao, Boxuan; Xu, Charles; Roh, Heegwang; Kim, Christina K; Cho, Kelvin F; Udeshi, Namrata D; Carr, Steven A; Ting, Alice Y | Nature methods | 37188954 | 2023 Jun |
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| CeLab, a microfluidic platform for the study of life history traits, reveals metformin and SGK-1 regulation of longevity and reproductive span. | Sohrabi, Salman; Cota, Vanessa; Murphy, Coleen T | Lab on a chip | 37221962 | 2023 Jun 13 |
| BODIPY-based near-infrared semiconducting polymer dot for selective yellow laser-excited cell imaging. | Chen, Lei; Jiang, Yifei; Xu, Shihan; Zhang, Jicheng; Jung, Seung-Ryoung; Yu, Jiangbo; Zhang, Xuanjun; Chiu, Daniel T | RSC advances | 37223645 | 2023 May 15 |
| Synthetic Biology Pathway to Nucleoside Triphosphates for Expanded Genetic Alphabets. | Li, Yubing; Abraham, Clay; Suslov, Oleg; Yaren, Ozlem; Shaw, Ryan W; Kim, Myong-Jung; Wan, Shuo; Marliere, Philippe; Benner, Steven A | ACS synthetic biology | 37227319 | 2023 Jun 16 |
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| Hepatic stellate cells maintain liver homeostasis through paracrine neurotrophin-3 signaling that induces hepatocyte proliferation. | Trinh, Vincent Quoc-Huy; Lee, Ting-Fang; Lemoinne, Sara; Ray, Kevin C; Ybanez, Maria D; Tsuchida, Takuma; Carter, James K; Agudo, Judith; Brown, Brian D; Akat, Kemal M; Friedman, Scott L; Lee, Youngmin A | Science signaling | 37253090 | 2023 May 30 |
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| Accelerated transcriptional elongation during aging impairs longevity. | Tyshkovskiy, Alexander; Zhang, Sirui; Gladyshev, Vadim N | Cell research | 37253838 | 2023 May 30 |
| A functional group-guided approach to aptamers for small molecules. | Yang, Kyungae; Mitchell, Noelle M; Banerjee, Saswata; Cheng, Zhenzhuang; Taylor, Steven; Kostic, Aleksandra M; Wong, Isabel; Sajjath, Sairaj; Zhang, Yameng; Stevens, Jacob; Mohan, Sumit; Landry, Donald W; Worgall, Tilla S; Andrews, Anne M; Stojanovic, Milan N | Science (New York, N.Y.) | 37262137 | 2023 Jun 02 |
| Single-nucleus multiregion transcriptomic analysis of brain vasculature in Alzheimer's disease. | Sun, Na; Akay, Leyla Anne; Murdock, Mitchell H; Park, Yongjin; Galiana-Melendez, Fabiola; Bubnys, Adele; Galani, Kyriaki; Mathys, Hansruedi; Jiang, Xueqiao; Ng, Ayesha P; Bennett, David A; Tsai, Li-Huei; Kellis, Manolis | Nature neuroscience | 37264161 | 2023 Jun |
| Facial Anonymization and Privacy Concerns in Total-Body PET/CT. | Selfridge, Aaron R; Spencer, Benjamin A; Abdelhafez, Yasser G; Nakagawa, Keisuke; Tupin, John D; Badawi, Ramsey D | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 37268426 | 2023 Aug |
| Neonatal Paenibacilliosis: Paenibacillus Infection as a Novel Cause of Sepsis in Term Neonates With High Risk of Sequelae in Uganda. | Ericson, Jessica E; Burgoine, Kathy; Kumbakumba, Elias; Ochora, Moses; Hehnly, Christine; Bajunirwe, Francis; Bazira, Joel; Fronterre, Claudio; Hagmann, Cornelia; Kulkarni, Abhaya V; Kumar, M Senthil; Magombe, Joshua; Mbabazi-Kabachelor, Edith; Morton, Sarah U; Movassagh, Mercedeh; Mugamba, John; Mulondo, Ronald; Natukwatsa, Davis; Kaaya, Brian Nsubuga; Olupot-Olupot, Peter; Onen, Justin; Sheldon, Kathryn; Smith, Jasmine; Ssentongo, Paddy; Ssenyonga, Peter; Warf, Benjamin; Wegoye, Emmanuel; Zhang, Lijun; Kiwanuka, Julius; Paulson, Joseph N; Broach, James R; Schiff, Steven J | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 37279589 | 2023 Sep 11 |
| How it feels in a cell. | Bonucci, Martina; Shu, Tong; Holt, Liam J | Trends in cell biology | 37286396 | 2023 Jun 05 |
| Cumulative Genetic Score and C9orf72 Repeat Status Independently Contribute to Amyotrophic Lateral Sclerosis Risk in 2 Case-Control Studies. | Dou, John; Bakulski, Kelly; Guo, Kai; Hur, Junguk; Zhao, Lili; Saez-Atienzar, Sara; Stark, Ali; Chia, Ruth; García-Redondo, Alberto; Rojas-Garcia, Ricardo; Vázquez Costa, Juan Francisco; Fernandez Santiago, Ruben; Bandres-Ciga, Sara; Gómez-Garre, Pilar; Periñán, Maria Teresa; Mir, Pablo; Pérez-Tur, Jordi; Cardona, Fernando; Menendez-Gonzalez, Manuel; Riancho, Javier; Borrego-Hernández, Daniel; Galán-Dávila, Lucia; Infante Ceberio, Jon; Pastor, Pau; Paradas, Carmen; Dols-Icardo, Oriol; Traynor, Bryan J; Feldman, Eva L; Goutman, Stephen A; Spanish Neurological Consortium | Neurology. Genetics | 37293291 | 2023 Aug |
| Multiplatform modeling of atrial fibrillation identifies phospholamban as a central regulator of cardiac rhythm. | Kervadec, Anaïs; Kezos, James; Ni, Haibo; Yu, Michael; Marchant, James; Spiering, Sean; Kannan, Suraj; Kwon, Chulan; Andersen, Peter; Bodmer, Rolf; Grandi, Eleonora; Ocorr, Karen; Colas, Alexandre R | Disease models & mechanisms | 37293707 | 2023 Jul 01 |
| Expanding the rumen Prevotella collection: The description of Prevotella communis, sp. nov. of ovine origin. | Grabner, Eva; Stare, Eva; Fanedl, Lijana; Zorec, Maša; Jones, Dakota S; Johnston, Christopher D; Avguštin, Gorazd; Accetto, Tomaž | Systematic and applied microbiology | 37295348 | 2023 Jul |
| FACS-Based Sequencing Approach to Evaluate Cell Type to Genotype Associations Using Cerebral Organoids. | Murray, Liam; Olson, Meagan N; Barton, Nathaniel; Dawes, Pepper; Chan, Yingleong; Lim, Elaine T | Methods in molecular biology (Clifton, N.J.) | 37300776 | 2023 |
| Design and Implementation of a Rat Ex Vivo Lung Perfusion Model. | Cleveland, William J; Hees, Josephine E; Balzer, Claudius; Douglas, Hunter F; Stevens, Troy; Riess, Matthias L | Journal of visualized experiments : JoVE | 37306411 | 2023 May 26 |
| Partial convergence of the human vaginal and rectal maternal microbiota in late gestation and early post-partum. | Shin, Hakdong; Martinez 2nd, Keith A; Henderson, Nora; Jay, Melanie; Schweizer, William; Bogaert, Debby; Park, Gwoncheol; Bokulich, Nicholas A; Blaser, Martin J; Dominguez-Bello, Maria Gloria | NPJ biofilms and microbiomes | 37311781 | 2023 Jun 13 |
| Rapid thalamocortical network switching mediated by cortical synchronization underlies propofol-induced EEG signatures: a biophysical model. | Soplata, Austin E; Adam, Elie; Brown, Emery N; Purdon, Patrick L; McCarthy, Michelle M; Kopell, Nancy | Journal of neurophysiology | 37314079 | 2023 Jul 01 |
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| SPIDR: a highly multiplexed method for mapping RNA-protein interactions uncovers a potential mechanism for selective translational suppression upon cellular stress. | Wolin, Erica; Guo, Jimmy K; Blanco, Mario R; Perez, Andrew A; Goronzy, Isabel N; Abdou, Ahmed A; Gorhe, Darvesh; Guttman, Mitchell; Jovanovic, Marko | bioRxiv : the preprint server for biology | 37333139 | 2023 Jun 07 |
| Epithelial tissue confinement inhibits cell growth and leads to volume-reducing divisions. | Devany, John; Falk, Martin J; Holt, Liam J; Murugan, Arvind; Gardel, Margaret L | Developmental cell | 37339629 | 2023 Jun 14 |
| Excess pancreatic elastase alters acinar-β cell communication by impairing the mechano-signaling and the PAR2 pathways. | Basile, Giorgio; Vetere, Amedeo; Hu, Jiang; Ijaduola, Oluwaseun; Zhang, Yi; Liu, Ka-Cheuk; Eltony, Amira M; De Jesus, Dario F; Fukuda, Kazuki; Doherty, Grace; Leech, Colin A; Chepurny, Oleg G; Holz, George G; Yun, Seok-Hyun; Andersson, Olov; Choudhary, Amit; Wagner, Bridget K; Kulkarni, Rohit N | Cell metabolism | 37339634 | 2023 Jul 11 |
| Physiology and diseases of tissue-resident macrophages. | Lazarov, Tomi; Juarez-Carreño, Sergio; Cox, Nehemiah; Geissmann, Frederic | Nature | 37344646 | 2023 Jun |
| The computational capabilities of many-to-many protein interaction networks. | Klumpe, Heidi E; Garcia-Ojalvo, Jordi; Elowitz, Michael B; Antebi, Yaron E | Cell systems | 37348461 | 2023 Jun 21 |
| Paenibacillus spp infection among infants with postinfectious hydrocephalus in Uganda: an observational case-control study. | Morton, Sarah U; Hehnly, Christine; Burgoine, Kathy; Ssentongo, Paddy; Ericson, Jessica E; Kumar, M Senthil; Hagmann, Cornelia; Fronterre, Claudio; Smith, Jasmine; Movassagh, Mercedeh; Streck, Nicholas; Bebell, Lisa M; Bazira, Joel; Kumbakumba, Elias; Bajunirwe, Francis; Mulondo, Ronald; Mbabazi-Kabachelor, Edith; Nsubuga, Brian K; Natukwatsa, Davis; Nalule, Esther; Magombe, Joshua; Erickson, Tim; Ngonzi, Joseph; Ochora, Moses; Olupot-Olupot, Peter; Onen, Justin; Ssenyonga, Peter; Mugamba, John; Warf, Benjamin C; Kulkarni, Abhaya V; Lane, Jessica; Whalen, Andrew J; Zhang, Lijun; Sheldon, Kathryn; Meier, Frederick A; Kiwanuka, Julius; Broach, James R; Paulson, Joseph N; Schiff, Steven J | The Lancet. Microbe | 37348522 | 2023 Aug |
| Dynamic mapping of proteome trafficking within and between living cells by TransitID. | Qin, Wei; Cheah, Joleen S; Xu, Charles; Messing, James; Freibaum, Brian D; Boeynaems, Steven; Taylor, J Paul; Udeshi, Namrata D; Carr, Steven A; Ting, Alice Y | Cell | 37385249 | 2023 Jul 20 |
| Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale. | Mendelevich, Asia; Gupta, Saumya; Pakharev, Aleksei; Teodosiadis, Athanasios; Mironov, Andrey A; Gimelbrant, Alexander A | Bioinformatics (Oxford, England) | 37387154 | 2023 Jun 30 |
| An Atlas of Variant Effects to understand the genome at nucleotide resolution. | Fowler, Douglas M; Adams, David J; Gloyn, Anna L; Hahn, William C; Marks, Debora S; Muffley, Lara A; Neal, James T; Roth, Frederick P; Rubin, Alan F; Starita, Lea M; Hurles, Matthew E | Genome biology | 37394429 | 2023 Jul 03 |
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| Fast light-field 3D microscopy with out-of-distribution detection and adaptation through Conditional Normalizing Flows. | Vizcaíno, Josué Page; Symvoulidis, Panagiotis; Wang, Zeguan; Jelten, Jonas; Favaro, Paolo; Boyden, Edward S; Lasser, Tobias | ArXiv | 37396615 | 2023 Jun 14 |
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| Fusobacterium sphaericum sp. nov. , isolated from a human colon tumor, is prevalent in various human body sites and induces IL-8 secretion from colorectal cancer cells. | Zepeda-Rivera, Martha A; Eisele, Yannick; Baryiames, Alexander; Wu, Hanrui; LaCourse, Kaitlyn D; Jones, Dakota S; Hauner, Hans; Dewhirst, Floyd E; Minot, Samuel S; Johnston, Christopher D; Bullman, Susan | bioRxiv : the preprint server for biology | 37398369 | 2023 Jun 16 |
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| Mitochondrial MICOS complex genes, implicated in hypoplastic left heart syndrome, maintain cardiac contractility and actomyosin integrity. | Birker, Katja; Ge, Shuchao; Kirkland, Natalie J; Theis, Jeanne L; Marchant, James; Fogarty, Zachary C; Missinato, Maria A; Kalvakuri, Sreehari; Grossfeld, Paul; Engler, Adam J; Ocorr, Karen; Nelson, Timothy J; Colas, Alexandre R; Olson, Timothy M; Vogler, Georg; Bodmer, Rolf | eLife | 37404133 | 2023 Jul 05 |
| Blood transcriptomic signatures associated with molecular changes in the brain and clinical outcomes in Parkinson's disease. | Irmady, Krithi; Hale, Caryn R; Qadri, Rizwana; Fak, John; Simelane, Sitsandziwe; Carroll, Thomas; Przedborski, Serge; Darnell, Robert B | Nature communications | 37407548 | 2023 Jul 05 |
| Segmental Dynamics of Membranous Cholesterol are Coupled. | Della Ripa, Lisa A; Courtney, Joseph M; Phinney, Samantha M; Borcik, Collin G; Burke, Martin D; Rienstra, Chad M; Pogorelov, Taras V | Journal of the American Chemical Society | 37410392 | 2023 Jul 19 |
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| Reversible Assembly of Proteolysis Targeting Chimeras. | Gui, Weijun; Giardina, Sarah F; Balzarini, Madeline; Barany, Francis; Kodadek, Thomas | ACS chemical biology | 37422908 | 2023 Jul 21 |
| Developing a Toolbox of Antibodies Validated for Array Tomography-Based Imaging of Brain Synapses. | Micheva, Kristina D; Gong, Belvin; Collman, Forrest; Weinberg, Richard J; Smith, Stephen J; Trimmer, James S; Murray, Karl D | bioRxiv : the preprint server for biology | 37425759 | 2023 Nov 08 |
| Engineering RNA export for measurement and manipulation of living cells. | Horns, Felix; Martinez, Joe A; Fan, Chengcheng; Haque, Mehernaz; Linton, James M; Tobin, Victoria; Santat, Leah; Maggiolo, Ailiena O; Bjorkman, Pamela J; Lois, Carlos; Elowitz, Michael B | Cell | 37437570 | 2023 Aug 17 |
| Neurocognitive and clinical characteristics of elementary school-aged children with a history of suicidal thoughts and behaviors. | Chen, Qi; Armstrong, Sarah E; Vakil, Fatima; Bridge, Jeffrey A; Keilp, John G; Sheftall, Arielle H | Journal of affective disorders | 37442443 | 2023 Oct 15 |
| Facile Synthesis of Homodimeric Protein Ligands. | Gui, Weijun; Kodadek, Thomas | Chembiochem : a European journal of chemical biology | 37449865 | 2023 Sep 15 |
| Distinct neuroinflammatory signatures exist across genetic and sporadic amyotrophic lateral sclerosis cohorts. | Rifai, Olivia M; O'Shaughnessy, Judi; Dando, Owen R; Munro, Alison F; Sewell, Michael D E; Abrahams, Sharon; Waldron, Fergal M; Sibley, Christopher R; Gregory, Jenna M | Brain : a journal of neurology | 37450566 | 2023 Dec 01 |
| Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells. | Goyal, Yogesh; Busch, Gianna T; Pillai, Maalavika; Li, Jingxin; Boe, Ryan H; Grody, Emanuelle I; Chelvanambi, Manoj; Dardani, Ian P; Emert, Benjamin; Bodkin, Nicholas; Braun, Jonas; Fingerman, Dylan; Kaur, Amanpreet; Jain, Naveen; Ravindran, Pavithran T; Mellis, Ian A; Kiani, Karun; Alicea, Gretchen M; Fane, Mitchell E; Ahmed, Syeda Subia; Li, Haiyin; Chen, Yeqing; Chai, Cedric; Kaster, Jessica; Witt, Russell G; Lazcano, Rossana; Ingram, Davis R; Johnson, Sarah B; Wani, Khalida; Dunagin, Margaret C; Lazar, Alexander J; Weeraratna, Ashani T; Wargo, Jennifer A; Herlyn, Meenhard; Raj, Arjun | Nature | 37468627 | 2023 Aug |
| Pattern recognition receptor agonists in pathogen vaccines mediate antitumor T-cell cross-priming. | Aleynick, Mark; Svensson-Arvelund, Judit; Pantsulaia, Gvantsa; Kim, Kristy; Rose, Samuel A; Upadhyay, Ranjan; Yellin, Michael; Marsh, Henry; Oreper, Daniel; Jhunjhunwala, Suchit; Moussion, Christine Carine; Merad, Miriam; Brown, Brian D; Brody, Joshua D | Journal for immunotherapy of cancer | 37487664 | 2023 Jul |
| Structural homology screens reveal host-derived poxvirus protein families impacting inflammasome activity. | Boys, Ian N; Johnson, Alex G; Quinlan, Meghan R; Kranzusch, Philip J; Elde, Nels C | Cell reports | 37494187 | 2023 Aug 29 |
| Using micro-cognition biomarkers of neurosystem dysfunction to redefine ADHD subtypes: A scalable digital path to diagnosis based on brain function. | Wexler, Bruce E; Kish, Ryan | Psychiatry research | 37494880 | 2023 Aug |
| Deploying synthetic coevolution and machine learning to engineer protein-protein interactions. | Yang, Aerin; Jude, Kevin M; Lai, Ben; Minot, Mason; Kocyla, Anna M; Glassman, Caleb R; Nishimiya, Daisuke; Kim, Yoon Seok; Reddy, Sai T; Khan, Aly A; Garcia, K Christopher | Science (New York, N.Y.) | 37499032 | 2023 Jul 28 |
| Multi-omic rejuvenation and life span extension on exposure to youthful circulation. | Zhang, Bohan; Lee, David E; Trapp, Alexandre; Tyshkovskiy, Alexander; Lu, Ake T; Bareja, Akshay; Kerepesi, Csaba; McKay, Lauren K; Shindyapina, Anastasia V; Dmitriev, Sergey E; Baht, Gurpreet S; Horvath, Steve; Gladyshev, Vadim N; White, James P | Nature aging | 37500973 | 2023 Aug |
| A natural bacterial pathogen of C. elegans uses a small RNA to induce transgenerational inheritance of learned avoidance. | Sengupta, Titas; St Ange, Jonathan; Moore, Rebecca; Kaletsky, Rachel; Marogi, Jacob; Myhrvold, Cameron; Gitai, Zemer; Murphy, Coleen T | bioRxiv : the preprint server for biology | 37503135 | 2023 Oct 17 |
| Stem cell transcriptional profiles from mouse subspecies reveal cis -regulatory evolution at ribosomal large-subunit genes. | Simon, Noah M; Kim, Yujin; Bautista, Diana M; Dutton, James R; Brem, Rachel B | bioRxiv : the preprint server for biology | 37503246 | 2023 Jul 18 |
| Sex-Specific Effects of Anxiety on Cognition and Activity-Dependent Neural Networks: Insights from (Female) Mice and (Wo)Men. | Hunsberger, Holly C; Lee, Seonjoo; Jin, Michelle; Lanio, Marcos; Whye, Alicia; Cha, Jiook; Scarlata, Miranda; Jayaseelan, Keerthana; Denny, Christine A | bioRxiv : the preprint server for biology | 37503264 | 2023 Jul 10 |
| A Series of Remote Melatonin Supplement Interventions for Poor Sleep: Protocol for a Feasibility Pilot Study for a Series of Personalized (N-of-1) Trials. | Butler, Mark; D'Angelo, Stefani; Perrin, Alexandra; Rodillas, Jordyn; Miller, Danielle; Arader, Lindsay; Chandereng, Thevaa; Cheung, Ying Kuen; Shechter, Ari; Davidson, Karina W | JMIR research protocols | 37535419 | 2023 Aug 03 |
| Advances in the measurement of prosthetic socket interface mechanics: a review of technology, techniques, and a 20-year update. | Young, Peyton R; Hebert, Jacqueline S; Marasco, Paul D; Carey, Jason P; Schofield, Jonathon S | Expert review of medical devices | 37537898 | 2023 |
| Efficient Formation of Single-copy Human Artificial Chromosomes. | Gambogi, Craig W; Mer, Elie; Brown, David M; Yankson, George; Gavade, Janardan N; Logsdon, Glennis A; Heun, Patrick; Glass, John I; Black, Ben E | bioRxiv : the preprint server for biology | 37546784 | 2023 Jun 30 |
| The mammalian midbody and midbody remnant are assembly sites for RNA and localized translation. | Park, Sungjin; Dahn, Randall; Kurt, Elif; Presle, Adrien; VanDenHeuvel, Kathryn; Moravec, Cara; Jambhekar, Ashwini; Olukoga, Olushola; Shepherd, Jason; Echard, Arnaud; Blower, Michael; Skop, Ahna R | Developmental cell | 37552987 | 2023 Oct 09 |
| Hypoxia Primes Human ISCs for Interleukin-Dependent Rescue of Stem Cell Activity. | Rivera, Kristina R; Bliton, R Jarrett; Burclaff, Joseph; Czerwinski, Michael J; Liu, Jintong; Trueblood, Jessica M; Hinesley, Caroline M; Breau, Keith A; Deal, Halston E; Joshi, Shlok; Pozdin, Vladimir A; Yao, Ming; Ziegler, Amanda L; Blikslager, Anthony T; Daniele, Michael A; Magness, Scott T | Cellular and molecular gastroenterology and hepatology | 37562653 | 2023 |
| Four additional natural 7-deazaguanine derivatives in phages and how to make them. | Cui, Liang; Balamkundu, Seetharamsing; Liu, Chuan-Fa; Ye, Hong; Hourihan, Jacob; Rausch, Astrid; Hauß, Christopher; Nilsson, Emelie; Hoetzinger, Matthias; Holmfeldt, Karin; Zhang, Weijia; Martinez-Alvarez, Laura; Peng, Xu; Tremblay, Denise; Moinau, Sylvain; Solonenko, Natalie; Sullivan, Matthew B; Lee, Yan-Jiun; Mulholland, Andrew; Weigele, Peter R; de Crécy-Lagard, Valérie; Dedon, Peter C; Hutinet, Geoffrey | Nucleic acids research | 37572349 | 2023 Sep 22 |
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| Comparative Analysis of Molecular Pathogenic Mechanisms and Antiviral Development Targeting Old and New World Hantaviruses. | Jeyachandran, Arjit Vijey; Irudayam, Joseph Ignatius; Dubey, Swati; Chakravarty, Nikhil; Konda, Bindu; Shah, Aayushi; Su, Baolong; Wang, Cheng; Cui, Qi; Williams, Kevin J; Srikanth, Sonal; Shi, Yanhong; Deb, Arjun; Damoiseaux, Robert; Stripp, Barry R; Ramaiah, Arunachalam; Arumugaswami, Vaithilingaraja | bioRxiv : the preprint server for biology | 37577539 | 2023 Aug 05 |
| Total-Body Multiparametric PET Quantification of 18F-FDG Delivery and Metabolism in the Study of Coronavirus Disease 2019 Recovery. | Wang, Yiran; Nardo, Lorenzo; Spencer, Benjamin A; Abdelhafez, Yasser G; Li, Elizabeth J; Omidvari, Negar; Chaudhari, Abhijit J; Badawi, Ramsey D; Jones, Terry; Cherry, Simon R; Wang, Guobao | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 37591539 | 2023 Nov |
| The DECON pilot project investigates predictive markers for successful bariatric surgery. | Seifert, Gabriel; Fagnocchi, Luca; Edozie, Michael; Herrmann, Stephan; Baumann, Hannah; Panzeri, Ilaria; Mewes, Stephanie; Aicher, David; Runkel, Mira; Lässle, Claudia; Fink, Jodok; Marjanovic, Goran; Fichtner-Feigl, Stephan; Pospisilik, J Andrew | Scientific reports | 37591977 | 2023 Aug 17 |
| Mapping nanoscale topographic features in thick tissues with speckle diffraction tomography. | Kang, Sungsam; Zhou, Renjie; Brelen, Marten; Mak, Heather K; Lin, Yuechuan; So, Peter T C; Yaqoob, Zahid | Light, science & applications | 37607903 | 2023 Aug 22 |
| EasyFlow: An open source, user friendly cytometry analyzer with graphic user interface (GUI). | Ma, Yitong; Antebi, Yaron | bioRxiv : the preprint server for biology | 37609189 | 2023 Aug 09 |
| A Series of Virtual Interventions for Chronic Lower Back Pain: A Feasibility Pilot Study for a Series of Personalized (N-of-1) Trials. | Butler, Mark; D'Angelo, Stefani; Kaplan, Melissa; Tashnim, Zarrin; Miller, Danielle; Ahn, Heejoon; Falzon, Louise; Dominello, Andrew J; Foroughi, Cirrus; Chandereng, Thevaa; Cheung, Ken; Davidson, Karina | Harvard data science review | 37609556 | 2022 |
| Design of 8-mer peptides that block Clostridioides difficile toxin A in intestinal cells. | Sarma, Sudeep; Catella, Carly M; San Pedro, Ellyce T; Xiao, Xingqing; Durmusoglu, Deniz; Menegatti, Stefano; Crook, Nathan; Magness, Scott T; Hall, Carol K | Communications biology | 37634026 | 2023 Aug 26 |
| Reorganization of pancreas circadian transcriptome with aging. | Sharma, Deepak; Wessel, Caitlin R; Mahdavinia, Mahboobeh; Preuss, Fabian; Bishehsari, Faraz | Aging | 37647013 | 2023 Aug 29 |
| Total-Body Perfusion Imaging with [11C]-Butanol. | Li, Elizabeth J; López, Javier E; Spencer, Benjamin A; Abdelhafez, Yasser; Badawi, Ramsey D; Wang, Guobao; Cherry, Simon R | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 37652544 | 2023 Nov |
| Single-cell massively-parallel multiplexed microbial sequencing (M3-seq) identifies rare bacterial populations and profiles phage infection. | Wang, Bruce; Lin, Aaron E; Yuan, Jiayi; Novak, Katherine E; Koch, Matthias D; Wingreen, Ned S; Adamson, Britt; Gitai, Zemer | Nature microbiology | 37653008 | 2023 Oct |
| Antibodies Expand the Scope of Angiotensin Receptor Pharmacology. | Skiba, Meredith A; Sterling, Sarah M; Rawson, Shaun; Gilman, Morgan S A; Xu, Huixin; Nemeth, Genevieve R; Hurley, Joseph D; Shen, Pengxiang; Staus, Dean P; Kim, Jihee; McMahon, Conor; Lehtinen, Maria K; Wingler, Laura M; Kruse, Andrew C | bioRxiv : the preprint server for biology | 37662341 | 2023 Aug 24 |
| Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress. | Cho, Ukrae H; Hetzer, Martin W | eLife | 37665327 | 2023 Sep 04 |
| Corrigendum to "Expanding the rumen Prevotella collection: the description of Prevotella communis, sp. nov. of ovine origin" [Syst. Appl. Microbiol. 46(4) (2023) 126437]. | Grabner, Eva; Stare, Eva; Fanedl, Lijana; Zorec, Maša; Jones, Dakota S; Johnston, Christopher D; Avguštin, Gorazd; Accetto, Tomaž | Systematic and applied microbiology | 37669882 | 2023 Sep |
| Dermomyotome-derived endothelial cells migrate to the dorsal aorta to support hematopoietic stem cell emergence. | Sahai-Hernandez, Pankaj; Pouget, Claire; Eyal, Shai; Svoboda, Ondrej; Chacon, Jose; Grimm, Lin; Gjøen, Tor; Traver, David | eLife | 37695317 | 2023 Sep 11 |
| Brain imaging with portable low-field MRI. | Kimberly, W Taylor; Sorby-Adams, Annabel J; Webb, Andrew G; Wu, Ed X; Beekman, Rachel; Bowry, Ritvij; Schiff, Steven J; de Havenon, Adam; Shen, Francis X; Sze, Gordon; Schaefer, Pamela; Iglesias, Juan Eugenio; Rosen, Matthew S; Sheth, Kevin N | Nature reviews bioengineering | 37705717 | 2023 Sep |
| mbQTL: an R/Bioconductor package for microbial quantitative trait loci (QTL) estimation. | Movassagh, Mercedeh; Schiff, Steven J; Paulson, Joseph N | Bioinformatics (Oxford, England) | 37707523 | 2023 Sep 02 |
| The amyotrophic lateral sclerosis exposome: recent advances and future directions. | Goutman, Stephen A; Savelieff, Masha G; Jang, Dae-Gyu; Hur, Junguk; Feldman, Eva L | Nature reviews. Neurology | 37709948 | 2023 Oct |
| RhoA-LIMK Signaling Axis Reveals Rostral-Caudal Plane and Spatial Dysregulation in the Brain of Alzheimer's Disease Mouse Models. | Nik Akhtar, Shayan; Lu, Qun | Journal of Alzheimer's disease : JAD | 37718806 | 2023 |
| Gut microbiome correlates with plasma lipids in amyotrophic lateral sclerosis. | Guo, Kai; Figueroa-Romero, Claudia; Noureldein, Mohamed H; Murdock, Benjamin J; Savelieff, Masha G; Hur, Junguk; Goutman, Stephen A; Feldman, Eva L | Brain : a journal of neurology | 37721161 | 2023 Sep 18 |
| A Series of Personalized Virtual Light Therapy Interventions for Fatigue: Feasibility Randomized Crossover Trial for N-of-1 Treatment. | Butler, Mark; D'Angelo, Stefani; Ahn, Heejoon; Chandereng, Thevaa; Miller, Danielle; Perrin, Alexandra; Romain, Anne-Marie N; Scatoni, Ava; Friel, Ciaran P; Cheung, Ying-Kuen; Davidson, Karina W | JMIR formative research | 37721795 | 2023 Sep 18 |
| Developmental priming of cancer susceptibility. | Panzeri, Ilaria; Fagnocchi, Luca; Apostle, Stefanos; Tompkins, Megan; Wolfrum, Emily; Madaj, Zachary; Hostetter, Galen; Liu, Yanqing; Schaefer, Kristen; Chih-Hsiang, Yang; Bergsma, Alexis; Drougard, Anne; Dror, Erez; PERMUTE; Chandler, Darrell; Schramek, Daniel; Triche Jr, Timothy J; Pospisilik, J Andrew | bioRxiv : the preprint server for biology | 37745326 | 2023 Sep 15 |
| Protein phosphatase 1 regulates core PCP signaling. | Song, Song; Cho, Bomsoo; Weiner, Alexis T; Nissen, Silas Boye; Naharros, Irene Ojeda; Bosch, Pablo Sanchez; Suyama, Kaye; Hu, Yanhui; He, Li; Svinkina, Tanya; Udeshi, Namrata D; Carr, Steven A; Perrimon, Norbert; Axelrod, Jeffrey D | bioRxiv : the preprint server for biology | 37745534 | 2023 Sep 13 |
| Lactadherin's Multistate Binding Predicts Stable Membrane-Bound Conformations of Factors V and VIII's C Domains. | Cheng, Kevin J; De Lio, Ashley M; Jain, Riya; Paul, Divyani; Morrissey, James H; Pogorelov, Taras V | Biochemistry | 37747791 | 2023 Oct 17 |
| Cell state transition analysis identifies interventions that improve control of Mycobacterium tuberculosis infection by susceptible macrophages. | Yabaji, Shivraj M; Rukhlenko, Oleksii S; Chatterjee, Sujoy; Bhattacharya, Bidisha; Wood, Emily; Kasaikina, Marina; Kholodenko, Boris N; Gimelbrant, Alexander A; Kramnik, Igor | Science advances | 37756395 | 2023 Sep 29 |
| Environmental risk scores of persistent organic pollutants associate with higher ALS risk and shorter survival in a new Michigan case/control cohort. | Goutman, Stephen A; Boss, Jonathan; Jang, Dae-Gyu; Mukherjee, Bhramar; Richardson, Rudy J; Batterman, Stuart; Feldman, Eva L | Journal of neurology, neurosurgery, and psychiatry | 37758454 | 2023 Sep 27 |
| Fibroblasts in heart scar tissue directly regulate cardiac excitability and arrhythmogenesis. | Wang, Yijie; Li, Qihao; Tao, Bo; Angelini, Marina; Ramadoss, Sivakumar; Sun, Baiming; Wang, Ping; Krokhaleva, Yuliya; Ma, Feiyang; Gu, Yiqian; Espinoza, Alejandro; Yamauchi, Ken; Pellegrini, Matteo; Novitch, Bennett; Olcese, Riccardo; Qu, Zhilin; Song, Zhen; Deb, Arjun | Science (New York, N.Y.) | 37769108 | 2023 Sep 29 |
| Single-cell atlas reveals correlates of high cognitive function, dementia, and resilience to Alzheimer's disease pathology. | Mathys, Hansruedi; Peng, Zhuyu; Boix, Carles A; Victor, Matheus B; Leary, Noelle; Babu, Sudhagar; Abdelhady, Ghada; Jiang, Xueqiao; Ng, Ayesha P; Ghafari, Kimia; Kunisky, Alexander K; Mantero, Julio; Galani, Kyriaki; Lohia, Vanshika N; Fortier, Gabrielle E; Lotfi, Yasmine; Ivey, Jason; Brown, Hannah P; Patel, Pratham R; Chakraborty, Nehal; Beaudway, Jacob I; Imhoff, Elizabeth J; Keeler, Cameron F; McChesney, Maren M; Patel, Haishal H; Patel, Sahil P; Thai, Megan T; Bennett, David A; Kellis, Manolis; Tsai, Li-Huei | Cell | 37774677 | 2023 Sep 28 |
| Human microglial state dynamics in Alzheimer's disease progression. | Sun, Na; Victor, Matheus B; Park, Yongjin P; Xiong, Xushen; Scannail, Aine Ni; Leary, Noelle; Prosper, Shaniah; Viswanathan, Soujanya; Luna, Xochitl; Boix, Carles A; James, Benjamin T; Tanigawa, Yosuke; Galani, Kyriaki; Mathys, Hansruedi; Jiang, Xueqiao; Ng, Ayesha P; Bennett, David A; Tsai, Li-Huei; Kellis, Manolis | Cell | 37774678 | 2023 Sep 28 |
| Epigenomic dissection of Alzheimer's disease pinpoints causal variants and reveals epigenome erosion. | Xiong, Xushen; James, Benjamin T; Boix, Carles A; Park, Yongjin P; Galani, Kyriaki; Victor, Matheus B; Sun, Na; Hou, Lei; Ho, Li-Lun; Mantero, Julio; Scannail, Aine Ni; Dileep, Vishnu; Dong, Weixiu; Mathys, Hansruedi; Bennett, David A; Tsai, Li-Huei; Kellis, Manolis | Cell | 37774680 | 2023 Sep 28 |
| Mesoscale molecular assembly is favored by the active, crowded cytoplasm. | Shu, Tong; Mitra, Gaurav; Alberts, Jonathan; Viana, Matheus P; Levy, Emmanuel D; Hocky, Glen M; Holt, Liam J | bioRxiv : the preprint server for biology | 37781612 | 2023 Sep 21 |
| INVADEseq to identify cell-adherent or invasive bacteria and the associated host transcriptome at single-cell-level resolution. | Galeano Niño, Jorge Luis; Wu, Hanrui; LaCourse, Kaitlyn D; Srinivasan, Harini; Fitzgibbon, Matthew; Minot, Samuel S; Sather, Cassie; Johnston, Christopher D; Bullman, Susan | Nature protocols | 37789194 | 2023 Nov |
| C. elegans Dicer acts with the RIG-I-like helicase DRH-1 and RDE-4 to cleave dsRNA. | Consalvo, Claudia D; Aderounmu, Adedeji M; Donelick, Helen M; Aruscavage, P Joe; Eckert, Debra M; Shen, Peter S; Bass, Brenda L | bioRxiv : the preprint server for biology | 37790392 | 2023 Oct 26 |
| Protocol for randomized personalized trial for stress management compared to standard of care. | Goodwin, Ashley M; Miller, Danielle; D'Angelo, Stefani; Perrin, Alexandra; Wiener, Ruby; Greene, Brittney; Romain, Anne-Marie N; Arader, Lindsay; Chandereng, Thevaa; Kuen Cheung, Ying; Davidson, Karina W; Butler, Mark | Frontiers in psychology | 37794909 | 2023 |
| Numerical investigation reveals challenges in measuring the contrast recovery coefficients in PET. | Bayerlein, Reimund; Spencer, Benjamin A; Abdelhafez, Yasser G; Cherry, Simon R; Badawi, Ramsey D; Omidvari, Negar | Physics in medicine and biology | 37802064 | 2023 Oct 26 |
| The Apolipoprotein E neutralizing antibody inhibits SARS-CoV-2 infection by blocking cellular entry of lipoviral particles. | Cui, Qi; Jeyachandran, Arjit Vijey; Garcia, Gustavo; Qin, Chao; Zhou, Yu; Zhang, Mingzi; Wang, Cheng; Sun, Guihua; Liu, Wei; Zhou, Tao; Feng, Lizhao; Palmer, Chance; Li, Zhuo; Aziz, Adam; Gomperts, Brigitte N; Feng, Pinghui; Arumugaswami, Vaithilingaraja; Shi, Yanhong | MedComm | 37822714 | 2023 Oct |
| First-in-human immunoPET imaging of COVID-19 convalescent patients using dynamic total-body PET and a CD8-targeted minibody. | Omidvari, Negar; Jones, Terry; Price, Pat M; Ferre, April L; Lu, Jacqueline; Abdelhafez, Yasser G; Sen, Fatma; Cohen, Stuart H; Schmiedehausen, Kristin; Badawi, Ramsey D; Shacklett, Barbara L; Wilson, Ian; Cherry, Simon R | Science advances | 37824612 | 2023 Oct 13 |
| Differential Susceptibility of Ex Vivo Primary Glioblastoma Tumors to Oncolytic Effect of Modified Zika Virus. | Garcia Jr, Gustavo; Chakravarty, Nikhil; Paiola, Sophia; Urena, Estrella; Gyani, Priya; Tse, Christopher; French, Samuel W; Danielpour, Moise; Breunig, Joshua J; Nathanson, David A; Arumugaswami, Vaithilingaraja | Cells | 37830597 | 2023 Sep 29 |
| Discovery adductomics provides a comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans. | Guilbaud, Axel; Ghanegolmohammadi, Farzan; Wang, Yijun; Leng, Jiapeng; Kreymerman, Alexander; Gamboa Varela, Jacqueline; Garbern, Jessica; Elwell, Hannah; Cao, Fang; Ricci-Blair, Elisabeth M; Liang, Cui; Balamkundu, Seetharamsing; Vidoudez, Charles; DeMott, Michael S; Bedi, Kenneth; Margulies, Kenneth B; Bennett, David A; Palmer, Abraham A; Barkley-Levenson, Amanda; Lee, Richard T; Dedon, Peter C | Nucleic acids research | 37843128 | 2023 Nov 10 |
| Applying a Gene Reversal Rate Computational Methodology to Identify Drugs for a Rare Cancer: Inflammatory Breast Cancer. | Ji, Xiaojia; Williams, Kevin P; Zheng, Weifan | Cancer informatics | 37846218 | 2023 |
| Engineering Ca2+-Dependent DNA Polymerase Activity. | Biggs, Bradley W; de Paz, Alexandra M; Bhan, Namita J; Cybulski, Thaddeus R; Church, George M; Tyo, Keith E J | ACS synthetic biology | 37856140 | 2023 Nov 17 |
| On the driver of blood circulation beyond the heart. | Li, Zheng; Pollack, Gerald H | PloS one | 37856567 | 2023 |
| TGFB1 induces fetal reprogramming and enhances intestinal regeneration. | Chen, Lei; Qiu, Xia; Dupre, Abigail; Pellon-Cardenas, Oscar; Fan, Xiaojiao; Xu, Xiaoting; Rout, Prateeksha; Walton, Katherine D; Burclaff, Joseph; Zhang, Ruolan; Fang, Wenxin; Ofer, Rachel; Logerfo, Alexandra; Vemuri, Kiranmayi; Bandyopadhyay, Sheila; Wang, Jianming; Barbet, Gaetan; Wang, Yan; Gao, Nan; Perekatt, Ansu O; Hu, Wenwei; Magness, Scott T; Spence, Jason R; Verzi, Michael P | Cell stem cell | 37865088 | 2023 Nov 02 |
| Interventions Across the Translational Research Spectrum: Addressing Disparities Among Racial and Ethnic Minoritized Youth with Type 1 Diabetes. | Ellis, Deborah A; Naar, Sylvie | Endocrinology and metabolism clinics of North America | 37865475 | 2023 Dec |
| An in vitro platform for quantifying cell cycle phase lengths in primary human intestinal stem cells. | Cotton, Michael J; Ariel, Pablo; Chen, Kaiwen; Walcott, Vanessa A; Dixit, Michelle; Breau, Keith A; Hinesley, Caroline M; Kedziora, Kasia; Tang, Cynthia Y; Zheng, Anna; Magness, Scott T; Burclaff, Joseph | bioRxiv : the preprint server for biology | 37873351 | 2023 Oct 10 |
| Chikungunya virus infection disrupts lymph node lymphatic endothelial cell composition and function via MARCO. | Lucas, Cormac J; Sheridan, Ryan M; Reynoso, Glennys V; Davenport, Bennett J; McCarthy, Mary K; Martin, Aspen; Hesselberth, Jay R; Hickman, Heather D; Tamburini, Beth A J; Morrison, Thomas E | bioRxiv : the preprint server for biology | 37873393 | 2023 Oct 13 |
| Enhanced transformation efficiency in Treponema denticola enabled by SyngenicDNA-based plasmids lacking restriction-modification target motifs. | Johnston, Christopher D; Goetting-Minesky, M Paula; Kennedy, Kelly; Godovikova, Valentina; Zayed, Sara M; Roberts, Richard J; Fenno, J Christopher | Molecular oral microbiology | 37880921 | 2023 Dec |
| Enzymatic synthesis and nanopore sequencing of 12-letter supernumerary DNA. | Kawabe, Hinako; Thomas, Christopher A; Hoshika, Shuichi; Kim, Myong-Jung; Kim, Myong-Sang; Miessner, Logan; Kaplan, Nicholas; Craig, Jonathan M; Gundlach, Jens H; Laszlo, Andrew H; Benner, Steven A; Marchand, Jorge A | Nature communications | 37884513 | 2023 Oct 26 |
| Power of inclusion: Enhancing polygenic prediction with admixed individuals. | Tanigawa, Yosuke; Kellis, Manolis | American journal of human genetics | 37890495 | 2023 Nov 02 |
| A neurodegeneration checkpoint mediated by REST protects against the onset of Alzheimer's disease. | Aron, Liviu; Qiu, Chenxi; Ngian, Zhen Kai; Liang, Marianna; Drake, Derek; Choi, Jaejoon; Fernandez, Marty A; Roche, Perle; Bunting, Emma L; Lacey, Ella K; Hamplova, Sara E; Yuan, Monlan; Wolfe, Michael S; Bennett, David A; Lee, Eunjung A; Yankner, Bruce A | Nature communications | 37919281 | 2023 Nov 02 |
| A ketogenic diet can mitigate SARS-CoV-2 induced systemic reprogramming and inflammation. | Palermo, Amelia; Li, Shen; Ten Hoeve, Johanna; Chellappa, Akshay; Morris, Alexandra; Dillon, Barbara; Ma, Feiyang; Wang, Yijie; Cao, Edward; Shabane, Byourak; Acín-Perez, Rebeca; Petcherski, Anton; Lusis, A Jake; Hazen, Stanley; Shirihai, Orian S; Pellegrini, Matteo; Arumugaswami, Vaithilingaraja; Graeber, Thomas G; Deb, Arjun | Communications biology | 37923961 | 2023 Nov 03 |
| Quantifying and correcting bias due to outcome dependent self-reported weights in longitudinal study of weight loss interventions. | Tong, Jiayi; Duan, Rui; Li, Ruowang; Luo, Chongliang; Moore, Jason H; Zhu, Jingsan; Foster, Gary D; Volpp, Kevin G; Yancy Jr, William S; Shaw, Pamela A; Chen, Yong | Scientific reports | 37925516 | 2023 Nov 04 |
| Inferring causal connectivity from pairwise recordings and optogenetics. | Lepperød, Mikkel Elle; Stöber, Tristan; Hafting, Torkel; Fyhn, Marianne; Kording, Konrad Paul | PLoS computational biology | 37934793 | 2023 Nov |
| EXPLORing Arthritis with Total-body Positron Emission Tomography. | Chaudhari, Abhijit J; Abdelhafez, Yasser G; Nardo, Lorenzo; Raychaudhuri, Siba P | Seminars in musculoskeletal radiology | 37935209 | 2023 Dec |
| Asymmetric conformations and lipid interactions shape the ATP-coupled cycle of a heterodimeric ABC transporter. | Tang, Qingyu; Sinclair, Matt; Hasdemir, Hale S; Stein, Richard A; Karakas, Erkan; Tajkhorshid, Emad; Mchaourab, Hassane S | Nature communications | 37938578 | 2023 Nov 08 |
| Impaired neural stress resistance and loss of REST in bipolar disorder. | Meyer, Katharina; Ling, King-Hwa; Yeo, Pei-Ling; Spathopoulou, Angeliki; Drake, Derek; Choi, Jaejoon; Aron, Liviu; Garcia-Corral, Mariana; Ko, Tak; Lee, Eunjung Alice; Tam, Jenny M; Perlis, Roy H; Church, George M; Tsai, Li-Huei; Yankner, Bruce A | Molecular psychiatry | 37938767 | 2023 Nov 08 |
| Tuning sterol extraction kinetics yields a renal-sparing polyene antifungal. | Maji, Arun; Soutar, Corinne P; Zhang, Jiabao; Lewandowska, Agnieszka; Uno, Brice E; Yan, Su; Shelke, Yogesh; Murhade, Ganesh; Nimerovsky, Evgeny; Borcik, Collin G; Arango, Andres S; Lange, Justin D; Marin-Toledo, Jonnathan P; Lyu, Yinghuan; Bailey, Keith L; Roady, Patrick J; Holler, Jordan T; Khandelwal, Anuj; SantaMaria, Anna M; Sanchez, Hiram; Juvvadi, Praveen R; Johns, Gina; Hageman, Michael J; Krise, Joanna; Gebremariam, Teclegiorgis; Youssef, Eman G; Bartizal, Ken; Marr, Kieren A; Steinbach, William J; Ibrahim, Ashraf S; Patterson, Thomas F; Wiederhold, Nathan P; Andes, David R; Pogorelov, Taras V; Schwieters, Charles D; Fan, Timothy M; Rienstra, Chad M; Burke, Martin D | Nature | 37938782 | 2023 Nov |
| CLIP-Seq analysis enables the design of protective ribosomal RNA bait oligonucleotides against C9ORF72 ALS/FTD poly-GR pathophysiology. | Ortega, Juan A; Sasselli, Ivan R; Boccitto, Marco; Fleming, Andrew C; Fortuna, Tyler R; Li, Yichen; Sato, Kohei; Clemons, Tristan D; Mckenna, Elizabeth D; Nguyen, Thao P; Anderson, Eric N; Asin, Jesus; Ichida, Justin K; Pandey, Udai B; Wolin, Sandra L; Stupp, Samuel I; Kiskinis, Evangelos | Science advances | 37948524 | 2023 Nov 10 |
| Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles. | Kaisanlahti, Anna; Turunen, Jenni; Byts, Nadiya; Samoylenko, Anatoliy; Bart, Genevieve; Virtanen, Nikke; Tejesvi, Mysore V; Zhyvolozhnyi, Artem; Sarfraz, Sonia; Kumpula, Sohvi; Hekkala, Jenni; Salmi, Sonja; Will, Olga; Korvala, Johanna; Paalanne, Niko; Erawijantari, Pande Putu; Suokas, Marko; Medina, Tuula Peñate; Vainio, Seppo; Medina, Oula Peñate; Lahti, Leo; Tapiainen, Terhi; Reunanen, Justus | Microbiome | 37953319 | 2023 Nov 13 |
| Principles of Computation by Competitive Protein Dimerization Networks. | Parres-Gold, Jacob; Levine, Matthew; Emert, Benjamin; Stuart, Andrew; Elowitz, Michael B | bioRxiv : the preprint server for biology | 37961250 | 2023 Nov 02 |
| Integrating single-cell RNA-seq datasets with substantial batch effects. | Hrovatin, Karin; Moinfar, Amir Ali; Lapuerta, Alejandro Tejada; Zappia, Luke; Lengerich, Ben; Kellis, Manolis; Theis, Fabian J | bioRxiv : the preprint server for biology | 37961672 | 2023 Nov 05 |
| Two-color coincidence single-molecule pulldown for the specific detection of disease-associated protein aggregates. | Saleeb, Rebecca S; Leighton, Craig; Lee, Ji-Eun; O'Shaughnessy, Judi; Jeacock, Kiani; Chappard, Alexandre; Cumberland, Robyn; Zhao, Tianxiao; Ball, Sarah R; Sunde, Margaret; Clarke, David J; Piché, Kristin; McPhail, Jacob A; Louwrier, Ariel; Angers, Rachel; Gandhi, Sonia; Downey, Patrick; Kunath, Tilo; Horrocks, Mathew H | Science advances | 37967183 | 2023 Nov 17 |
| Protein phosphatase 1 regulates core PCP signaling. | Song, Song; Cho, Bomsoo; Weiner, Alexis T; Nissen, Silas Boye; Ojeda Naharros, Irene; Sanchez Bosch, Pablo; Suyama, Kaye; Hu, Yanhui; He, Li; Svinkina, Tanya; Udeshi, Namrata D; Carr, Steven A; Perrimon, Norbert; Axelrod, Jeffrey D | EMBO reports | 37975164 | 2023 Dec 06 |
| TRILL: ORCHESTRATING MODULAR DEEP-LEARNING WORKFLOWS FOR DEMOCRATIZED, SCALABLE PROTEIN ANALYSIS AND ENGINEERING. | Martinez, Zachary A; Murray, Richard M; Thomson, Matt W | bioRxiv : the preprint server for biology | 37986952 | 2023 Nov 10 |
| Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1. | Zhang, Yue; Soubias, Olivier; Pant, Shashank; Heinrich, Frank; Vogel, Alexander; Li, Jess; Li, Yifei; Clifton, Luke A; Daum, Sebastian; Bacia, Kirsten; Huster, Daniel; Randazzo, Paul A; Lösche, Mathias; Tajkhorshid, Emad; Byrd, R Andrew | Nature communications | 37989735 | 2023 Nov 21 |
| Conduct and Implementation of Personalized Trials in Research and Practice. | Kravitz, Richard L; Duan, Naihua | Harvard data science review | 38009129 | 2022 |
| Introducing Data Sciences to N-of-1 Designs, Statistics, Use-Cases, the Future, and the Moniker 'N-of-1' Trial. | Davidson, Karina W; Cheung, Ying Kuen; Friel, Ciarán P; Suls, Jerry | Harvard data science review | 38009132 | 2022 |
| Personalized Data Science and Personalized (N-of-1) Trials: Promising Paradigms for Individualized Health Care. | Duan, Naihua; Norman, Daniel; Schmid, Christopher; Sim, Ida; Kravitz, Richard L | Harvard data science review | 38009133 | 2022 |
| Multifaceted impact of specialized neuropeptide-intensive neurons on the selective vulnerability in Alzheimer's disease. | Li, Manci; Larsen, Peter A | bioRxiv : the preprint server for biology | 38014130 | 2023 Nov 16 |
| N-of-1 Trials, Their Reporting Guidelines, and the Advancement of Open Science Principles. | Porcino, Antony; Vohra, Sunita | Harvard data science review | 38031562 | 2022 |
| Facile layer-by-layer fabrication of semiconductor microdisk laser particles. | Dannenberg, Paul H; Liapis, Andreas C; Martino, Nicola; Sarkar, Debarghya; Kim, Kwon-Hyeon; Yun, Seok-Hyun | APL photonics | 38031595 | 2023 Feb |
| Catalytic Protein Inhibitors. | Kodadek, Thomas | Angewandte Chemie (International ed. in English) | 38064411 | 2023 Dec 08 |
| Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders. | Orenbuch, Rose; Kollasch, Aaron W; Spinner, Hansen D; Shearer, Courtney A; Hopf, Thomas A; Franceschi, Dinko; Dias, Mafalda; Frazer, Jonathan; Marks, Debora S | medRxiv : the preprint server for health sciences | 38076790 | 2023 Nov 28 |
| Topological Learning Approach to Characterizing Biological Membranes. | Arango, Andres S; Park, Hyun; Tajkhorshid, Emad | bioRxiv : the preprint server for biology | 38076911 | 2023 Nov 28 |
| P. aeruginosa controls both C. elegans attraction and pathogenesis by regulating nitrogen assimilation. | Marogi, Jacob G; Murphy, Coleen T; Myhrvold, Cameron; Gitai, Zemer | bioRxiv : the preprint server for biology | 38077073 | 2023 Nov 29 |
| ProteinGym: Large-Scale Benchmarks for Protein Design and Fitness Prediction. | Notin, Pascal; Kollasch, Aaron W; Ritter, Daniel; van Niekerk, Lood; Paul, Steffanie; Spinner, Hansen; Rollins, Nathan; Shaw, Ada; Weitzman, Ruben; Frazer, Jonathan; Dias, Mafalda; Franceschi, Dinko; Orenbuch, Rose; Gal, Yarin; Marks, Debora S | bioRxiv : the preprint server for biology | 38106144 | 2023 Dec 08 |
| Aggregation-Induced Stimulated Emission of 100% Dye Microspheres. | Kim, Kwon-Hyeon; Yan, Hao; Yun, Seok-Hyun | Advanced optical materials | 38107448 | 2023 Jul 18 |
| Amplification of Signal on Cell Surfaces in Molecular Cascades. | Rudchenko, Sergei; Taylor, Steven; Milosavic, Nenad; Rudchenko, Maria; Wedderhoff Tissi, Betina; Mapara, Markus Y; Stojanovic, Milan N | Cells | 38132177 | 2023 Dec 18 |
| Unexplored regions of the protein sequence-structure map revealed at scale by a library of foldtuned language models. | Subramanian, Arjuna M; Thomson, Matt | bioRxiv : the preprint server for biology | 38187750 | 2023 Dec 23 |
| The carboxy terminus causes interfacial assembly of oleate hydratase on a membrane bilayer. | Radka, Christopher D; Grace, Christy R; Hasdemir, Hale S; Li, Yupeng; Rodriguez, Carlos C; Rodrigues, Patrick; Oldham, Michael L; Qayyum, M Zuhaib; Pitre, Aaron; MacCain, William J; Kalathur, Ravi C; Tajkhorshid, Emad; Rock, Charles O | The Journal of biological chemistry | 38211817 | 2024 Jan 10 |
| Antibody-mediated SARS-CoV-2 entry in cultured cells. | Kibria, Md Golam; Lavine, Christy L; Tang, Weichun; Wang, Shaowei; Gao, Hailong; Shi, Wei; Zhu, Haisun; Voyer, Jewel; Rits-Volloch, Sophia; Keerti; Bi, Caihong; Peng, Hanqin; Wesemann, Duane R; Lu, Jianming; Xie, Hang; Seaman, Michael S; Chen, Bing | EMBO reports | 38277394 | 2023 Dec 06 |
| Evaluating Personalized (N-of-1) Trials in Rare Diseases: How Much Experimentation Is Enough? | Cheung, Ken; Mitsumoto, Hiroshi | Harvard data science review | 38283317 | 2022 |
| Personalized Trial Ethics and Institutional Review Board Submissions. | Samuel, Joyce P; Wootton, Susan H | Harvard data science review | 38283318 | 2022 |
| PNMA2 forms immunogenic non-enveloped virus-like capsids associated with paraneoplastic neurological syndrome. | Xu, Junjie; Erlendsson, Simon; Singh, Manvendra; Holling, G Aaron; Regier, Matthew; Ibiricu, Iosune; Einstein, Jenifer; Hantak, Michael P; Day, Gregory S; Piquet, Amanda L; Smith, Tammy L; Clardy, Stacey L; Whiteley, Alexandra M; Feschotte, Cédric; Briggs, John A G; Shepherd, Jason D | Cell | 38301645 | 2024 Jan 30 |
| A microglia clonal inflammatory disorder in Alzheimer's Disease. | Vicario, Rocio; Fragkogianni, Stamatina; Weber, Leslie; Lazarov, Tomi; Hu, Yang; Hayashi, Samantha Y; Craddock, Barbara P; Socci, Nicholas D; Alberdi, Araitz; Baako, Ann; Ay, Oyku; Ogishi, Masato; Lopez-Rodrigo, Estibaliz; Kappagantula, Rajya; Viale, Agnes; Iacobuzio-Donahue, Christine A; Zhou, Ting; Ransohoff, Richard M; Chesworth, Richard; Bank, Netherlands Brain; Abdel-Wahab, Omar; Boisson, Bertrand; Elemento, Olivier; Casanova, Jean-Laurent; Miller, W Todd; Geissmann, Frederic | bioRxiv : the preprint server for biology | 38328106 | 2024 Jan 25 |
| Why Do I Get Side Effects? Personalized (N-of-1) Trials for Statin Intolerance and the Nocebo Effect. | Howard, James Philip; Wood, Frances A; Francis, Darrel P | Harvard data science review | 38344133 | 2022 |
| Role of the Exposome in Neurodegenerative Disease: Recent Insights and Future Directions. | Sakowski, Stacey A; Koubek, Emily J; Chen, Kevin S; Goutman, Stephen A; Feldman, Eva L | Annals of neurology | 38411261 | 2024 Feb 27 |
| Multimodal positron emission tomography (PET) imaging in non-oncologic musculoskeletal radiology. | Kogan, Feliks; Yoon, Daehyun; Teeter, Matthew G; Chaudhari, Abhijit J; Hales, Laurel; Barbieri, Marco; Gold, Garry E; Vainberg, Yael; Goyal, Ananya; Watkins, Lauren | Skeletal radiology | 38492029 | 2024 Mar 16 |
| Single-cell dissection of the human motor and prefrontal cortices in ALS and FTLD. | Pineda, S Sebastian; Lee, Hyeseung; Ulloa-Navas, Maria J; Linville, Raleigh M; Garcia, Francisco J; Galani, Kyriakitsa; Engelberg-Cook, Erica; Castanedes, Monica C; Fitzwalter, Brent E; Pregent, Luc J; Gardashli, Mahammad E; DeTure, Michael; Vera-Garcia, Diana V; Hucke, Andre T S; Oskarsson, Bjorn E; Murray, Melissa E; Dickson, Dennis W; Heiman, Myriam; Belzil, Veronique V; Kellis, Manolis | Cell | 38521060 | 2024 Mar 14 |
| Human brain small extracellular vesicles contain selectively packaged, full-length mRNA. | Ransom, Linnea S; Liu, Christine S; Dunsmore, Emily; Palmer, Carter R; Nicodemus, Juliet; Ziomek, Derya; Williams, Nyssa; Chun, Jerold | Cell reports | 38578831 | 2024 Apr 04 |
