Common Fund Data Ecosystem (CFDE)
Common Fund Data Ecosystem (CFDE)
Program Publications
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Search Results
The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date |
|---|---|---|---|---|---|
| Mondrian Abstraction and Language Model Embeddings for Differential Pathway Analysis. | Al Abir F, Chen JY | bioRxiv : the preprint server for biology | 38659966 | bioRxiv | 2024 Aug 19 |
| Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundation Models. | Sankar BS, Gilliland D, Rincon J, Hermjakob H, Yan Y, Adam I, Lemaster G, Wang D, Watson K, Bui A, Wang W, Ping P | Bioengineering (Basel, Switzerland) | 39451360 | Bioengineering (Basel) | 2024 Sep 29 |
| Germline pathogenic variation impacts somatic alterations and patient outcomes in pediatric CNS tumors. | Corbett RJ, Kaufman RS, McQuaid SW, Vaksman Z, Phul S, Brown MA, Mason JL, Waszak SM, Zhang B, Zhong C, Desai H, Hausler R, Naqvi AS, Chroni A, Geng Z, Gonzalez EM, Zhu Y, Heath AP, Li M, Penn Medicine BioBank, Regeneron Genetics Center, Storm PB, Resnick AC, Maxwell KN, Cole KA, Waanders AJ, Bornhorst M, MacFarland SP, Rokita JL, Diskin SJ | medRxiv : the preprint server for health sciences | 39974082 | medRxiv | 2025 Feb 6 |
| TIA1 Mediates Divergent Inflammatory Responses to Tauopathy in Microglia and Macrophages. | Webber CJ, van de Spek SJF, Cruz AL, Puri S, Zhang C, Aw JTM, Papadimitriou GZ, Roberts R, Jiang K, Tran TN, Zhang L, Taylor A, Wang Z, Porter J, Sotiropoulos I, Emili A, Silva J, Li H, Wolozin B | bioRxiv : the preprint server for biology | 39574689 | bioRxiv | 2024 Nov 7 |
| Nuclear receptor-SINE B1 network modulates expanded pluripotency in blastoids and blastocysts. | Wong KW, Zeng Y, Tay E, Teo JHJ, Cipta NO, Hamashima K, Yi Y, Liu H, Warrier T, Le MTN, Ng SC, Li QJ, Li H, Loh YH | Nature communications | 39562549 | Nat Commun | 2024 Nov 19 |
| Functional Connectivity Alterations in Cocaine Use Disorder: Insights from the Triple Network Model and the Addictions Neuroclinical Assessment Framework. | Xu Z, Li L, Liu R, Azzam M, Wan S, Wang J | bioRxiv : the preprint server for biology | 39605468 | bioRxiv | 2024 Nov 14 |
| WIMOAD: Weighted Integration of Multi-Omics data for Alzheimer's Disease (AD) Diagnosis. | Xiao H, Wang J, Wan S | bioRxiv : the preprint server for biology | 39386613 | bioRxiv | 2024 Sep 27 |
| Accurate identification of medulloblastoma subtypes from diverse data sources with severe batch effects by RaMBat. | Sun M, Wang J, Wan S | bioRxiv : the preprint server for biology | 40060540 | bioRxiv | 2025 Feb 28 |
| SAMP: Identifying antimicrobial peptides by an ensemble learning model based on proportionalized split amino acid composition. | Feng J, Sun M, Liu C, Zhang W, Xu C, Wang J, Wang G, Wan S | Briefings in functional genomics | 39573886 | Brief Funct Genomics | 2024 Dec 6 |
| RanBALL: An Ensemble Random Projection Model for Identifying Subtypes of B-Cell Acute Lymphoblastic Leukemia. | Li L, Xiao H, Wu X, Tang Z, Khoury JD, Wang J, Wan S | bioRxiv : the preprint server for biology | 39386448 | bioRxiv | 2025 Jan 2 |
| A review of artificial intelligence-based brain age estimation and its applications for related diseases. | Azzam M, Xu Z, Liu R, Li L, Meng Soh K, Challagundla KB, Wan S, Wang J | Briefings in functional genomics | 39436320 | Brief Funct Genomics | 2025 Jan 15 |
| Dynamics of microcompartment formation at the mitosis-to-G1 transition. | Goel VY, Aboreden NG, Jusuf JM, Zhang H, Mori LP, Mirny LA, Blobel GA, Banigan EJ, Hansen AS | bioRxiv : the preprint server for biology | 39345388 | bioRxiv | 2024 Sep 16 |
| Enhancer selectivity in space and time: from enhancer-promoter interactions to promoter activation. | Yang JH, Hansen AS | Nature reviews. Molecular cell biology | 38413840 | Nat Rev Mol Cell Biol | 2024 Jul |
| LDB1 establishes multi-enhancer networks to regulate gene expression. | Aboreden NG, Lam JC, Goel VY, Wang S, Wang X, Midla SC, Quijano A, Keller CA, Giardine BM, Hardison RC, Zhang H, Hansen AS, Blobel GA | bioRxiv : the preprint server for biology | 39229045 | bioRxiv | 2024 Aug 24 |
| Genome-wide absolute quantification of chromatin looping. | Jusuf JM, Grosse-Holz S, Gabriele M, Mach P, Flyamer IM, Zechner C, Giorgetti L, Mirny LA, Hansen AS | bioRxiv : the preprint server for biology | 39935886 | bioRxiv | 2025 Jan 15 |
| A functional genomic framework to elucidate novel causal metabolic dysfunction-associated fatty liver disease genes. | Saliba-Gustafsson P, Justesen JM, Ranta A, Sharma D, Bielczyk-Maczynska E, Li J, Najmi LA, Apodaka M, Aspichueta P, Björck HM, Eriksson P, Schurr TM, Franco-Cereceda A, Gloudemans M, Mujica E, den Hoed M, Assimes TL, Quertermous T, Carcamo-Orive I, Park CY, Knowles JW | Hepatology (Baltimore, Md.) | 39190705 | Hepatology | 2024 Aug 27 |
| Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage. | Börner K, Blood PD, Silverstein JC, Ruffalo M, Satija R, Teichmann SA, Pryhuber G, Misra RS, Purkerson J, Fan J, Hickey JW, Molla G, Xu C, Zhang Y, Weber G, Jain Y, Qaurooni D, Kong Y, HRA Team, Bueckle A, Herr BW 2nd | bioRxiv : the preprint server for biology | 38826261 | bioRxiv | 2024 Aug 14 |
| Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage. | Börner K, Blood PD, Silverstein JC, Ruffalo M, Satija R, Teichmann SA, Pryhuber GJ, Misra RS, Purkerson JM, Fan J, Hickey JW, Molla G, Xu C, Zhang Y, Weber GM, Jain Y, Qaurooni D, Kong Y, HRA Team, Bueckle A, Herr BW 2nd | Nature methods | 40082611 | Nat Methods | 2025 Apr |
| Discovery of optimal cell type classification marker genes from single cell RNA sequencing data. | Liu A, Peng B, Pankajam AV, Duong TE, Pryhuber G, Scheuermann RH, Zhang Y | bioRxiv : the preprint server for biology | 38712147 | bioRxiv | 2024 Jun 26 |
| Characterization of aberrant splicing in pediatric central nervous system tumors reveals CLK1 as a candidate oncogenic dependency. | Naqvi AS, Corbett RJ, Seghal P, Conkrite KL, Rathi KS, Ennis BM, Hayer KE, Zhang B, Brown MA, Miller DP, Kraya AA, Coleman KL, Dybas JM, Geng Z, Blackden C, Arif S, Chroni A, Lahiri A, Hollawell ML, Storm PB, Haydar D, Foster JB, Koptyra M, Madsen PJ, Diskin SJ, Thomas-Tikhonenko A, Resnick AC, Rokita JL | bioRxiv : the preprint server for biology | 39149264 | bioRxiv | 2025 Feb 26 |
| Neuronal cell adhesion molecule (NRCAM) variant defined by microexon skipping is an essential, antigenically distinct, and targetable proteoform in high-grade glioma. | Sehgal P, Naqvi AS, Higgins M, Liu J, Harvey K, Jarroux J, Kim T, Mankaliye B, Mishra P, Watterson G, Fine J, Davis J, Hayer KE, Castro A, Mogbo A, Drummer C, Martinez D, Koptyra MP, Ang Z, Wang K, Farrel A, Quesnel-Vallieres M, Barash Y, Spangler JB, Rokita JL, Resnick AC, Tilgner HU, DeRaedt T, Powell DJ, Thomas-Tikhonenko A | bioRxiv : the preprint server for biology | 39868324 | bioRxiv | 2025 Jan 19 |
| High-Throughput Empirical and Virtual Screening To Discover Novel Inhibitors of Polyploid Giant Cancer Cells in Breast Cancer. | Ma Y, Shih CH, Cheng J, Chen HC, Wang LJ, Tan Y, Zhang Y, Brown DD, Oesterreich S, Lee AV, Chiu YC, Chen YC | Analytical chemistry | 40040372 | Anal Chem | 2025 Mar 18 |
| shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning. | Wang LJ, Ning M, Nayak T, Kasper MJ, Monga SP, Huang Y, Chen Y, Chiu YC | Patterns (New York, N.Y.) | 38370127 | Patterns (N Y) | 2024 Feb 9 |
| reguloGPT: Harnessing GPT for Knowledge Graph Construction of Molecular Regulatory Pathways. | Wu X, Zeng Y, Das A, Jo S, Zhang T, Patel P, Zhang J, Gao SJ, Pratt D, Chiu YC, Huang Y | bioRxiv : the preprint server for biology | 38313267 | bioRxiv | 2024 Jan 30 |
| Structural basis of differential gene expression at eQTLs loci from high-resolution ensemble models of 3D single-cell chromatin conformations. | Du L, Farooq H, Delafrouz P, Liang J | Bioinformatics (Oxford, England) | 39891345 | Bioinformatics | 2025 Feb 4 |
| Effects of Lamina-Chromatin Attachment on Super Long-Range Chromatin Interactions. | Delafrouz P, Farooq H, Du L, Ma A, Liang J | bioRxiv : the preprint server for biology | 40027763 | bioRxiv | 2025 Feb 17 |
| ScatTR: Estimating the Size of Long Tandem Repeat Expansions from Short-Reads. | Al-Abri R, Gürsoy G | bioRxiv : the preprint server for biology | 40027646 | bioRxiv | 2025 Feb 20 |
| Computational Analysis of the Gut Microbiota-Mediated Drug Metabolism. | Chum S, Naveira Montalvo A, Hassoun S | bioRxiv : the preprint server for biology | 39764061 | bioRxiv | 2025 Mar 7 |
| scMD: cell type deconvolution using single-cell DNA methylation references. | Cai M, Zhou J, McKennan C, Wang J | bioRxiv : the preprint server for biology | 37577715 | bioRxiv | 2023 Aug 6 |
| scMD facilitates cell type deconvolution using single-cell DNA methylation references. | Cai M, Zhou J, McKennan C, Wang J | Communications biology | 38168620 | Commun Biol | 2024 Jan 2 |
| Accurate estimation of rare cell type fractions from tissue omics data via hierarchical deconvolution. | Huang P, Cai M, Lu X, McKennan C, Wang J | bioRxiv : the preprint server for biology | 36993280 | bioRxiv | 2023 Mar 16 |
| Transcriptional risk scores in Alzheimer's disease: From pathology to cognition. | Pyun JM, Park YH, Wang J, Bennett DA, Bice PJ, Kim JP, Kim S, Saykin AJ, Nho K | Alzheimer's & dementia : the journal of the Alzheimer's Association | 37563770 | Alzheimers Dement | 2024 Jan |
| BLEND: Probabilistic Cellular Deconvolution with Automated Reference Selection. | Huang P, Cai M, McKennan C, Wang J | bioRxiv : the preprint server for biology | 39149243 | bioRxiv | 2024 Aug 6 |
| Comparing chromatin contact maps at scale: methods and insights. | Gunsalus LM, McArthur E, Gjoni K, Kuang S, Pittman M, Capra JA, Pollard KS | bioRxiv : the preprint server for biology | 37066196 | bioRxiv | 2023 Apr 4 |
| Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling. | Yan RE, Corman A, Katgara L, Wang X, Xue X, Gajic ZZ, Sam R, Farid M, Friedman SM, Choo J, Raimondi I, Ganesan S, Katsevich E, Greenfield JP, Dahmane N, Sanjana NE | Nature biotechnology | 39572737 | Nat Biotechnol | 2024 Nov 21 |
| SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models. | Gjoni K, Pollard KS | bioRxiv : the preprint server for biology | 37961123 | bioRxiv | 2023 Nov 5 |
| SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models. | Gjoni K, Pollard KS | Bioinformatics (Oxford, England) | 38796686 | Bioinformatics | 2024 Jun 3 |
| De novo structural variants in autism spectrum disorder disrupt distal regulatory interactions of neuronal genes. | Gjoni K, Ren X, Everitt A, Shen Y, Pollard KS | bioRxiv : the preprint server for biology | 39574698 | bioRxiv | 2024 Nov 7 |
| Comparing chromatin contact maps at scale: methods and insights. | Gunsalus LM, McArthur E, Gjoni K, Kuang S, Pittman M, Capra JA, Pollard KS | Research square | 37292728 | Res Sq | 2023 May 23 |
| Comparing chromatin contact maps at scale: methods and insights. | Gjoni K, Gunsalus LM, Kuang S, McArthur E, Pittman M, Capra JA, Pollard KS | Nature methods | 40108448 | Nat Methods | 2025 Apr |
| Flnc: Machine Learning Improves the Identification of Novel Long Noncoding RNAs from Stand-Alone RNA-Seq Data. | Li Z, Zhou P, Kwon E, Fitzgerald KA, Weng Z, Zhou C | Non-coding RNA | 36287122 | Noncoding RNA | 2022 Oct 13 |
| Differences in the Stool Metabolome between Vegans and Omnivores: Analyzing the NIST Stool Reference Material. | Cumeras R, Shen T, Valdiviez L, Tippins Z, Haffner BD, Fiehn O | Metabolites | 37623865 | Metabolites | 2023 Aug 7 |
| LibGen: Generating High Quality Spectral Libraries of Natural Products for EAD-, UVPD-, and HCD-High Resolution Mass Spectrometers. | Kong F, Keshet U, Shen T, Rodriguez E, Fiehn O | Analytical chemistry | 37939222 | Anal Chem | 2023 Nov 21 |
| Alternative Identification of Glycosides Using MS/MS Matching with an In Silico-Modified Aglycone Mass Spectra Library. | Rodríguez EP, Li Y, Vaniya A, Shih PM, Fiehn O | Analytical chemistry | 37390485 | Anal Chem | 2023 Jul 18 |
| Flash entropy search to query all mass spectral libraries in real time. | Li Y, Fiehn O | Nature methods | 37735567 | Nat Methods | 2023 Oct |
| High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. | Lai Y, Koelmel JP, Walker DI, Price EJ, Papazian S, Manz KE, Castilla-Fernández D, Bowden JA, Nikiforov V, David A, Bessonneau V, Amer B, Seethapathy S, Hu X, Lin EZ, Jbebli A, McNeil BR, Barupal D, Cerasa M, Xie H, Kalia V, Nandakumar R, Singh R, Tian Z, Gao P, Zhao Y, Froment J, Rostkowski P, Dubey S, Coufalíková K, Seličová H, Hecht H, Liu S, Udhani HH, Restituito S, Tchou-Wong KM, Lu K, Martin JW, Warth B, Godri Pollitt KJ, Klánová J, Fiehn O, Metz TO, Pennell KD, Jones DP, Miller GW | Environmental science & technology | 38984754 | Environ Sci Technol | 2024 Jul 23 |
| Metabolomic characterization of human glioblastomas and patient plasma: a pilot study. | Liu YA, Aboud O, Dahabiyeh LA, Bloch O, Fiehn O | F1000Research | 39371551 | F1000Res | 2024 |
| A pilot study on metabolomic characterization of human glioblastomas and patient plasma. | Liu A, Aboud O, Dahabiyeh LA, Bloch O, Fiehn O | Research square | 36945517 | Res Sq | 2023 Mar 10 |
| Manifold medicine: A schema that expands treatment dimensionality. | Ung CY, Weiskittel TM, Correia C, Kaufmann SH, Li H | Drug discovery today | 34600126 | Drug Discov Today | 2022 Jan |
| De novo individualized disease modules reveal the synthetic penetrance of genes and inform personalized treatment regimens. | Weiskittel TM, Ung CY, Correia C, Zhang C, Li H | Genome research | 34876496 | Genome Res | 2022 Jan |
| Single-nucleus multiomic mapping of m(6)A methylomes and transcriptomes in native populations of cells with sn-m6A-CT. | Hamashima K, Wong KW, Sam TW, Teo JHJ, Taneja R, Le MTN, Li QJ, Hanna JH, Li H, Loh YH | Molecular cell | 37657444 | Mol Cell | 2023 Aug 25 |
| Deciphering tumour microenvironment and elucidating the origin of cancer cells in ovarian clear cell carcinoma. | Kamaraj US, Gautam P, Cheng T, Chin TS, Tay SK, Ho TH, Nadarajah R, Goh RCH, Wong SL, Mantoo S, Busmanis I, Li H, Le MT, Li QJ, Lim EH, Loh YH | bioRxiv : the preprint server for biology | 39149248 | bioRxiv | 2024 Aug 8 |
| Senescent alveolar macrophages promote early-stage lung tumorigenesis. | Prieto LI, Sturmlechner I, Graves SI, Zhang C, Goplen NP, Yi ES, Sun J, Li H, Baker DJ | Cancer cell | 37267954 | Cancer Cell | 2023 Jul 10 |
| Manifold epigenetics: A conceptual model that guides engineering strategies to improve whole-body regenerative health. | Ung CY, Correia C, Billadeau DD, Zhu S, Li H | Frontiers in cell and developmental biology | 36866271 | Front Cell Dev Biol | 2023 |
| SPIN-AI: A Deep Learning Model That Identifies Spatially Predictive Genes. | Meng-Lin K, Ung CY, Zhang C, Weiskittel TM, Wisniewski P, Zhang Z, Tan SH, Yeo KS, Zhu S, Correia C, Li H | Biomolecules | 37371475 | Biomolecules | 2023 May 27 |
| Glycogen synthase kinase 3 activity enhances liver inflammation in MASH. | Khoury M, Guo Q, Furuta K, Correia C, Meroueh C, Kim Lee HS, Warasnhe K, Valenzuela-Pérez L, Mazar AP, Kim I, Noh YK, Holmes H, Romero MF, Sussman CR, Pavelko KD, Islam S, Bamidele AO, Hirsova P, Li H, Ibrahim SH | JHEP reports : innovation in hepatology | 38882600 | JHEP Rep | 2024 Jun |
| The Rise of Hypothesis-Driven Artificial Intelligence in Oncology. | Xianyu Z, Correia C, Ung CY, Zhu S, Billadeau DD, Li H | Cancers | 38398213 | Cancers (Basel) | 2024 Feb 18 |
| Network Biology-Inspired Machine Learning Features Predict Cancer Gene Targets and Reveal Target Coordinating Mechanisms. | Weiskittel TM, Cao A, Meng-Lin K, Lehmann Z, Feng B, Correia C, Zhang C, Wisniewski P, Zhu S, Yong Ung C, Li H | Pharmaceuticals (Basel, Switzerland) | 37242535 | Pharmaceuticals (Basel) | 2023 May 16 |
| Multiorgan locked-state model of chronic diseases and systems pharmacology opportunities. | Ung CY, Correia C, Li H, Adams CM, Westendorf JJ, Zhu S | Drug discovery today | 37967790 | Drug Discov Today | 2024 Jan |
| Loop Catalog: a comprehensive HiChIP database of human and mouse samples. | Reyna J, Fetter K, Ignacio R, Ali Marandi CC, Ma A, Rao N, Jiang Z, Figueroa DS, Bhattacharyya S, Ay F | bioRxiv : the preprint server for biology | 38746164 | bioRxiv | 2025 Mar 6 |
| Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils. | Bittremieux W, Levitsky L, Pilz M, Sachsenberg T, Huber F, Wang M, Dorrestein PC | Journal of proteome research | 36688502 | J Proteome Res | 2023 Feb 3 |
| Reproducible mass spectrometry data processing and compound annotation in MZmine 3. | Heuckeroth S, Damiani T, Smirnov A, Mokshyna O, Brungs C, Korf A, Smith JD, Stincone P, Dreolin N, Nothias LF, Hyötyläinen T, Orešič M, Karst U, Dorrestein PC, Petras D, Du X, van der Hooft JJJ, Schmid R, Pluskal T | Nature protocols | 38769143 | Nat Protoc | 2024 Sep |
| ModiFinder: Tandem Mass Spectral Alignment Enables Structural Modification Site Localization. | Shahneh MRZ, Strobel M, Vitale GA, Geibel C, Abiead YE, Garg N, Wagner B, Forchhammer K, Aron A, Phelan VV, Petras D, Wang M | Journal of the American Society for Mass Spectrometry | 38830143 | J Am Soc Mass Spectrom | 2024 Nov 6 |
| Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Leptothoe Strains of Marine Cyanobacteria. | Avalon NE, Reis MA, Thornburg CC, Williamson RT, Petras D, Aron AT, Neuhaus GF, Al-Hindy M, Mitrevska J, Ferreira L, Morais J, El Abiead Y, Glukhov E, Alexander KL, Vulpanovici FA, Bertin MJ, Whitner S, Choi H, Spengler G, Blinov K, Almohammadi AM, Shaala LA, Kew WR, Paša-Tolić L, Youssef DTA, Dorrestein PC, Vasconcelos V, Gerwick L, McPhail KL, Gerwick WH | Journal of the American Chemical Society | 38918178 | J Am Chem Soc | 2024 Jul 10 |
| A guide to reverse metabolomics-a framework for big data discovery strategy. | Charron-Lamoureux V, Mannochio-Russo H, Lamichhane S, Xing S, Patan A, Portal Gomes PW, Rajkumar P, Deleray V, Caraballo-Rodríguez AM, Chua KV, Lee LS, Liu Z, Ching J, Wang M, Dorrestein PC | Nature protocols | 40021805 | Nat Protoc | 2025 Feb 28 |
| Proteogenomics reveals sex-biased aging genes and coordinated splicing in cardiac aging. | Han Y, Wennersten SA, Wright JM, Ludwig RW, Lau E, Lam MPY | American journal of physiology. Heart and circulatory physiology | 35930447 | Am J Physiol Heart Circ Physiol | 2022 Sep 1 |
| Harmonizing Labeling and Analytical Strategies to Obtain Protein Turnover Rates in Intact Adult Animals. | Hammond DE, Simpson DM, Franco C, Wright Muelas M, Waters J, Ludwig RW, Prescott MC, Hurst JL, Beynon RJ, Lau E | Molecular & cellular proteomics : MCP | 35636728 | Mol Cell Proteomics | 2022 Jul |
| Protein prediction models support widespread post-transcriptional regulation of protein abundance by interacting partners. | Srivastava H, Lippincott MJ, Currie J, Canfield R, Lam MPY, Lau E | PLoS computational biology | 36356032 | PLoS Comput Biol | 2022 Nov |
| Defining the Roles of Cardiokines in Human Aging and Age-Associated Diseases. | Srivastava H, Pozzoli M, Lau E | Frontiers in aging | 35821831 | Front Aging | 2022 |
| Assessing reproducibility of high-throughput experiments in the case of missing data. | Singh R, Zhang F, Li Q | Statistics in medicine | 35178743 | Stat Med | 2022 May 10 |
| Integrating 3D genomic and epigenomic data to enhance target gene discovery and drug repurposing in transcriptome-wide association studies. | Khunsriraksakul C, McGuire D, Sauteraud R, Chen F, Yang L, Wang L, Hughey J, Eckert S, Dylan Weissenkampen J, Shenoy G, Marx O, Carrel L, Jiang B, Liu DJ | Nature communications | 35672318 | Nat Commun | 2022 Jun 7 |
| Genetic diversity fuels gene discovery for tobacco and alcohol use. | Saunders GRB, Wang X, Chen F, Jang SK, Liu M, Wang C, Gao S, Jiang Y, Khunsriraksakul C, Otto JM, Addison C, Akiyama M, Albert CM, Aliev F, Alonso A, Arnett DK, Ashley-Koch AE, Ashrani AA, Barnes KC, Barr RG, Bartz TM, Becker DM, Bielak LF, Benjamin EJ, Bis JC, Bjornsdottir G, Blangero J, Bleecker ER, Boardman JD, Boerwinkle E, Boomsma DI, Boorgula MP, Bowden DW, Brody JA, Cade BE, Chasman DI, Chavan S, Chen YI, Chen Z, Cheng I, Cho MH, Choquet H, Cole JW, Cornelis MC, Cucca F, Curran JE, de Andrade M, Dick DM, Docherty AR, Duggirala R, Eaton CB, Ehringer MA, Esko T, Faul JD, Fernandes Silva L, Fiorillo E, Fornage M, Freedman BI, Gabrielsen ME, Garrett ME, Gharib SA, Gieger C, Gillespie N, Glahn DC, Gordon SD, Gu CC, Gu D, Gudbjartsson DF, Guo X, Haessler J, Hall ME, Haller T, Harris KM, He J, Herd P, Hewitt JK, Hickie I, Hidalgo B, Hokanson JE, Hopfer C, Hottenga J, Hou L, Huang H, Hung YJ, Hunter DJ, Hveem K, Hwang SJ, Hwu CM, Iacono W, Irvin MR, Jee YH, Johnson EO, Joo YY, Jorgenson E, Justice AE, Kamatani Y, Kaplan RC, Kaprio J, Kardia SLR, Keller MC, Kelly TN, Kooperberg C, Korhonen T, Kraft P, Krauter K, Kuusisto J, Laakso M, Lasky-Su J, Lee WJ, Lee JJ, Levy D, Li L, Li K, Li Y, Lin K, Lind PA, Liu C, Lloyd-Jones DM, Lutz SM, Ma J, Mägi R, Manichaikul A, Martin NG, Mathur R, Matoba N, McArdle PF, McGue M, McQueen MB, Medland SE, Metspalu A, Meyers DA, Millwood IY, Mitchell BD, Mohlke KL, Moll M, Montasser ME, Morrison AC, Mulas A, Nielsen JB, North KE, Oelsner EC, Okada Y, Orrù V, Palmer ND, Palviainen T, Pandit A, Park SL, Peters U, Peters A, Peyser PA, Polderman TJC, Rafaels N, Redline S, Reed RM, Reiner AP, Rice JP, Rich SS, Richmond NE, Roan C, Rotter JI, Rueschman MN, Runarsdottir V, Saccone NL, Schwartz DA, Shadyab AH, Shi J, Shringarpure SS, Sicinski K, Skogholt AH, Smith JA, Smith NL, Sotoodehnia N, Stallings MC, Stefansson H, Stefansson K, Stitzel JA, Sun X, Syed M, Tal-Singer R, Taylor AE, Taylor KD, Telen MJ, Thai KK, Tiwari H, Turman C, Tyrfingsson T, Wall TL, Walters RG, Weir DR, Weiss ST, White WB, Whitfield JB, Wiggins KL, Willemsen G, Willer CJ, Winsvold BS, Xu H, Yanek LR, Yin J, Young KL, Young KA, Yu B, Zhao W, Zhou W, Zöllner S, Zuccolo L, 23andMe Research Team, Biobank Japan Project, Batini C, Bergen AW, Bierut LJ, David SP, Gagliano Taliun SA, Hancock DB, Jiang B, Munafò MR, Thorgeirsson TE, Liu DJ, Vrieze S | Nature | 36477530 | Nature | 2022 Dec |
| Construction and Application of Polygenic Risk Scores in Autoimmune Diseases. | Khunsriraksakul C, Markus H, Olsen NJ, Carrel L, Jiang B, Liu DJ | Frontiers in immunology | 35833142 | Front Immunol | 2022 |
| Multi-ancestry transcriptome-wide association analyses yield insights into tobacco use biology and drug repurposing. | Chen F, Wang X, Jang SK, Quach BC, Weissenkampen JD, Khunsriraksakul C, Yang L, Sauteraud R, Albert CM, Allred NDD, Arnett DK, Ashley-Koch AE, Barnes KC, Barr RG, Becker DM, Bielak LF, Bis JC, Blangero J, Boorgula MP, Chasman DI, Chavan S, Chen YI, Chuang LM, Correa A, Curran JE, David SP, de las Fuentes L, Deka R, Duggirala R, Faul JD, Garrett ME, Gharib SA, Guo X, Hall ME, Hawley NL, He J, Hobbs BD, Hokanson JE, Hsiung CA, Hwang SJ, Hyde TM, Irvin MR, Jaffe AE, Johnson EO, Kaplan R, Kardia SLR, Kaufman JD, Kelly TN, Kleinman JE, Kooperberg C, Lee IT, Levy D, Lutz SM, Manichaikul AW, Martin LW, Marx O, McGarvey ST, Minster RL, Moll M, Moussa KA, Naseri T, North KE, Oelsner EC, Peralta JM, Peyser PA, Psaty BM, Rafaels N, Raffield LM, Reupena MS, Rich SS, Rotter JI, Schwartz DA, Shadyab AH, Sheu WH, Sims M, Smith JA, Sun X, Taylor KD, Telen MJ, Watson H, Weeks DE, Weir DR, Yanek LR, Young KA, Young KL, Zhao W, Hancock DB, Jiang B, Vrieze S, Liu DJ | Nature genetics | 36702996 | Nat Genet | 2023 Feb |
| Multi-ancestry and multi-trait genome-wide association meta-analyses inform clinical risk prediction for systemic lupus erythematosus. | Khunsriraksakul C, Li Q, Markus H, Patrick MT, Sauteraud R, McGuire D, Wang X, Wang C, Wang L, Chen S, Shenoy G, Li B, Zhong X, Olsen NJ, Carrel L, Tsoi LC, Jiang B, Liu DJ | Nature communications | 36750564 | Nat Commun | 2023 Feb 7 |
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