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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Authors Journal PubMedID Publication Date
Engineered serum markers for non-invasive monitoring of gene expression in the brain. Lee, Sangsin; Nouraein, Shirin; Kwon, James J; Huang, Zhimin; Wojick, Jessica A; Xia, Boao; Corder, Gregory; Szablowski, Jerzy O Nature biotechnology 38200117 2024 Jan 10
Light evokes stereotyped global brain dynamics in Caenorhabditis elegans. Gauthey, Wayan; Randi, Francesco; Sharma, Anuj K; Kumar, Sandeep; Leifer, Andrew M Current biology : CB 38194919 2024 Jan 08
Ketone bodies as chemical signals for the immune system. Gonzatti, Michelangelo Bauwelz; Goldberg, Emily American journal of physiology. Cell physiology 38189135 2024 Jan 08
Structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1) reveals the conformational flexibility of its lipid binding domain. Navratna, Vikas; Kumar, Arvind; Rana, Jaimin K; Mosalaganti, Shyamal bioRxiv : the preprint server for biology 38187772 2023 Dec 23
PIEZO1-HaloTag hiPSCs: Bridging Molecular, Cellular and Tissue Imaging. Bertaccini, Gabriella A; Evans, Elizabeth L; Nourse, Jamison L; Dickinson, George D; Liu, Gaoxiang; Casanellas, Ignasi; Seal, Sayan; Ly, Alan T; Holt, Jesse R; Yan, Shijun; Hui, Elliot E; Panicker, Mitradas M; Upadhyayula, Srigokul; Parker, Ian; Pathak, Medha M bioRxiv : the preprint server for biology 38187535 2023 Dec 23
Cholecystokinin-A signaling regulates automaticity of pacemaker cardiomyocytes. Ruan, Hongmei; Mandla, Ravi; Ravi, Namita; Galang, Giselle; Soe, Amanda W; Olgin, Jeffrey E; Lang, Di; Vedantham, Vasanth Frontiers in physiology 38179138 2023
Predictive analyses of regulatory sequences with EUGENe. Klie, Adam; Laub, David; Talwar, James V; Stites, Hayden; Jores, Tobias; Solvason, Joe J; Farley, Emma K; Carter, Hannah Nature computational science 38177592 2023 Nov
The eRF1 degrader SRI-41315 acts as a molecular glue at the ribosomal decoding center. Coelho, João P L; Yip, Matthew C J; Oltion, Keely; Taunton, Jack; Shao, Sichen Nature chemical biology 38172604 2024 Jan 03
This is an illness. No one is supposed to be treated badly: Community-based stigma assessments in South Africa to inform TB stigma intervention design. Foster, Isabel; Biewer, Amanda; Vanqa, Nosivuyile; Makanda, Goodman; Tisile, Phumeza; Hayward, Sally E; Wademan, Dillon T; Anthony, Michaile G; Mbuyamba, Rachel; Galloway, Michelle; Human, Wieda; Westhuizen, Helene-Mari; Friedland, Jon S; Marino-Medina, Andrew; Schoeman, Ingrid; Hoddinott, Graeme; Nathavitharana, Ruvandhi R Research square 38168425 2023 Dec 11
Smart lattice light-sheet microscopy for imaging rare and complex cellular events. Shi, Yu; Tabet, Jimmy S; Milkie, Daniel E; Daugird, Timothy A; Yang, Chelsea Q; Ritter, Alex T; Giovannucci, Andrea; Legant, Wesley R Nature methods 38167656 2024 Jan 02
Bond-selective fluorescence imaging with single-molecule sensitivity. Wang, Haomin; Lee, Dongkwan; Cao, Yulu; Bi, Xiaotian; Du, Jiajun; Miao, Kun; Wei, Lu Nature photonics 38162388 2023 Oct
Non-Viral RNA Delivery During Pregnancy: Opportunities and Challenges. Chaudhary, Namit; Newby, Alexandra N; Whitehead, Kathryn A Small (Weinheim an der Bergstrasse, Germany) 38145340 2023 Dec 25
LRRC37B is a human modifier of voltage-gated sodium channels and axon excitability in cortical neurons. Libé-Philippot, Baptiste; Lejeune, Amélie; Wierda, Keimpe; Louros, Nikolaos; Erkol, Emir; Vlaeminck, Ine; Beckers, Sofie; Gaspariunaite, Vaiva; Bilheu, Angéline; Konstantoulea, Katerina; Nyitrai, Hajnalka; De Vleeschouwer, Matthias; Vennekens, Kristel M; Vidal, Niels; Bird, Thomas W; Soto, Daniela C; Jaspers, Tom; Dewilde, Maarten; Dennis, Megan Y; Rousseau, Frederic; Comoletti, Davide; Schymkowitz, Joost; Theys, Tom; de Wit, Joris; Vanderhaeghen, Pierre Cell 38134874 2023 Dec 21
ENPP1 is an innate immune checkpoint of the anticancer cGAMP-STING pathway in breast cancer. Wang, Songnan; Böhnert, Volker; Joseph, Alby J; Sudaryo, Valentino; Skariah, Gemini; Swinderman, Jason T; Yu, Feiqiao B; Subramanyam, Vishvak; Wolf, Denise M; Lyu, Xuchao; Gilbert, Luke A; Van't Veer, Laura J; Goodarzi, Hani; Li, Lingyin Proceedings of the National Academy of Sciences of the United States of America 38117852 2023 Dec 26
Myomatrix arrays for high-definition muscle recording. Chung, Bryce; Zia, Muneeb; Thomas, Kyle A; Michaels, Jonathan A; Jacob, Amanda; Pack, Andrea; Williams, Matthew J; Nagapudi, Kailash; Teng, Lay Heng; Arrambide, Eduardo; Ouellette, Logan; Oey, Nicole; Gibbs, Rhuna; Anschutz, Philip; Lu, Jiaao; Wu, Yu; Kashefi, Mehrdad; Oya, Tomomichi; Kersten, Rhonda; Mosberger, Alice C; O'Connell, Sean; Wang, Runming; Marques, Hugo; Mendes, Ana Rita; Lenschow, Constanze; Kondakath, Gayathri; Kim, Jeong Jun; Olson, William; Quinn, Kiara N; Perkins, Pierce; Gatto, Graziana; Thanawalla, Ayesha; Coltman, Susan; Kim, Taegyo; Smith, Trevor; Binder-Markey, Ben; Zaback, Martin; Thompson, Christopher K; Giszter, Simon; Person, Abigail; Goulding, Martyn; Azim, Eiman; Thakor, Nitish; O'Connor, Daniel; Trimmer, Barry; Lima, Susana Q; Carey, Megan R; Pandarinath, Chethan; Costa, Rui M; Pruszynski, J Andrew; Bakir, Muhannad; Sober, Samuel J eLife 38113081 2023 Dec 19
Layered mechanisms regulating the human mitochondrial NAD+ transporter SLC25A51. Goyal, Shivansh; Cambronne, Xiaolu A Biochemical Society transactions 38108469 2023 Dec 20
A Permissive Amide N-Methyltransferase for Dithiolopyrrolones. Chen, Xiaoyan; Johnson, Rachel M; Li, Bo ACS catalysis 38106463 2023 Feb 03
Characterizing mobility patterns and malaria risk factors in semi-nomadic populations of Northern Kenya. Meredith, Hannah R; Wesolowski, Amy; Okoth, Dennis; Maraga, Linda; Ambani, George; Chepkwony, Tabitha; Abel, Lucy; Kipkoech, Joseph; Lokoel, Gilchrist; Esimit, Daniel; Lokemer, Samuel; Maragia, James; O'Meara, Wendy Prudhomme; Obala, Andrew A medRxiv : the preprint server for health sciences 38106223 2023 Dec 09
Rapid modeling of an ultra-rare epilepsy variant in wild-type mice by in utero prime editing. Robertson, Colin D; Davis, Patrick; Richardson, Ryan R; Iffland 2nd, Philip H; Vieira, Daiana C O; Steyert, Marilyn; McKeon, Paige N; Romanowski, Andrea J; Crutcher, Garrett; Jašarević, Eldin; Wolff, Steffen B E; Mathur, Brian N; Crino, Peter B; Bale, Tracy L; Dick, Ivy E; Poulopoulos, Alexandros bioRxiv : the preprint server for biology 38106154 2023 Dec 19
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe. Manriquez-Sandoval, Edgar; Brewer, Joy; Lule, Gabriela; Lopez, Samanta; Fried, Stephen D bioRxiv : the preprint server for biology 38106106 2023 Dec 05
Adhesome Receptor Clustering is Accompanied by the Colocalization of the Associated Genes in the Cell Nucleus. Cammarata, Louis V; Uhler, Caroline; Shivashankar, G V bioRxiv : the preprint server for biology 38106037 2023 Dec 08
Regulatable assembly of synthetic microtubule architectures using engineered MAP-IDR condensates. Chang, Chih-Chia; Coyle, Scott M bioRxiv : the preprint server for biology 38105997 2023 Dec 06
Rapid and Quantitative Functional Interrogation of Human Enhancer Variant Activity in Live Mice. Hollingsworth, Ethan W; Liu, Taryn A; Jacinto, Sandra H; Chen, Cindy X; Alcantara, Joshua A; Kvon, Evgeny Z bioRxiv : the preprint server for biology 38105996 2023 Dec 10
An embedded microfluidic valve for dynamic control of cellular communication. DeAngelis, Mark A; Ruder, Warren C; LeDuc, Philip R Applied physics letters 38094664 2023 Dec 11
A Visual, In-Expensive, and Wireless Capillary Rheometer for Characterizing Wholly-Cellular Bioinks. Du, Jianyi; Lee, Stacey; Sinha, Soham; Solberg, Fredrik S; Ho, Debbie L L; Sampson, Joshua P; Wang, Qiuling; Tam, Tony; Skylar-Scott, Mark A Small (Weinheim an der Bergstrasse, Germany) 38085139 2023 Dec 12
Unsupervised learning of stationary and switching dynamical system models from Poisson observations. Song, Christian Y; Shanechi, Maryam M Journal of neural engineering 38083862 2023 Dec 12
Ryanodine receptor 2 inhibition reduces dispersion of cardiac repolarization, improves contractile function, and prevents sudden arrhythmic death in failing hearts. Joshi, Pooja; Estes, Shanea; DeMazumder, Deeptankar; Knollmann, Bjorn C; Dey, Swati eLife 38078905 2023 Dec 11
The formation of ubiquitin rich condensates triggers recruitment of the ATG9A lipid transfer complex to initiate basal autophagy. Broadbent, D G; McEwan, C M; Tsang, T M; Poole, D M; Naylor, B C; Price, J C; Schmidt, J C; Andersen, J L bioRxiv : the preprint server for biology 38077022 2023 Nov 29
Somatic Mosaicism in Amyotrophic Lateral Sclerosis and Frontotemporal Dementia Reveals Widespread Degeneration from Focal Mutations. Zhou, Zinan; Kim, Junho; Huang, August Yue; Nolan, Matthew; Park, Junseok; Doan, Ryan; Shin, Taehwan; Miller, Michael B; Chhouk, Brian; Morillo, Katherine; Yeh, Rebecca C; Kenny, Connor; Neil, Jennifer E; Lee, Chao-Zong; Ohkubo, Takuya; Ravits, John; Ansorge, Olaf; Ostrow, Lyle W; Lagier-Tourenne, Clotilde; Lee, Eunjung Alice; Walsh, Christopher A bioRxiv : the preprint server for biology 38077003 2023 Dec 01
A fluorogenic complementation tool kit for interrogating lipid droplet-organelle interaction. Li, Xiao; Gamuyao, Rico; Wu, Ming-Lun; Cho, Woo Jung; Kurtz, Nathan B; King, Sharon V; Petersen, R A; Stabley, Daniel R; Lindow, Caleb; Climer, Leslie; Shirinifard, Abbas; Ferrara, Francesca; Throm, Robert E; Robinson, Camenzind G; Carisey, Alex; Tebo, Alison G; Chang, Chi-Lun bioRxiv : the preprint server for biology 38076863 2023 Nov 29
Distinct catecholaminergic pathways projecting to hippocampal CA1 transmit contrasting signals during behavior and learning. Heer, Chad M; Sheffield, Mark E J bioRxiv : the preprint server for biology 38076843 2023 Nov 30
Connectomic reconstruction predicts the functional organization of visual inputs to the navigation center of the Drosophila brain. Garner, Dustin; Kind, Emil; Nern, Aljoscha; Houghton, Lucy; Zhao, Arthur; Sancer, Gizem; Rubin, Gerald M; Wernet, Mathias F; Kim, Sung Soo bioRxiv : the preprint server for biology 38076786 2023 Nov 30
In Vivo mRNA CAR T Cell Engineering via Targeted Ionizable Lipid Nanoparticles with Extrahepatic Tropism. Billingsley, Margaret M; Gong, Ningqiang; Mukalel, Alvin J; Thatte, Ajay S; El-Mayta, Rakan; Patel, Savan K; Metzloff, Ann E; Swingle, Kelsey L; Han, Xuexiang; Xue, Lulu; Hamilton, Alex G; Safford, Hannah C; Alameh, Mohamad-Gabriel; Papp, Tyler E; Parhiz, Hamideh; Weissman, Drew; Mitchell, Michael J Small (Weinheim an der Bergstrasse, Germany) 38072809 2023 Dec 10
Structure of the complete Saccharomyces cerevisiae Rpd3S-nucleosome complex. Markert, Jonathan W; Vos, Seychelle M; Farnung, Lucas Nature communications 38065958 2023 Dec 08
Transcriptional changes are tightly coupled to chromatin reorganization during cellular aging. Braunger, Jana M; Cammarata, Louis V; Sornapudi, Trinadha Rao; Uhler, Caroline; Shivashankar, G V Aging cell 38062919 2023 Dec 07
Systematic comparison of nonviral gene delivery strategies for efficient co-expression of two transgenes in human mesenchymal stem cells. Kozisek, Tyler; Samuelson, Luke; Hamann, Andrew; Pannier, Angela K Journal of biological engineering 38062439 2023 Dec 07
Tracing developmental lineages. Raj, Bushra Nature methods 38057508 2023 Dec
CytoDirect: A Nucleic Acid Nanodevice for Specific and Efficient Delivery of Functional Payloads to the Cytoplasm. Yu, Lu; Xu, Yang; Al-Amin, Md; Jiang, Shuoxing; Sample, Matthew; Prasad, Abhay; Stephanopoulos, Nicholas; Šulc, Petr; Yan, Hao Journal of the American Chemical Society 38055928 2023 Dec 20
Tobacco smoke exposure recruits inflammatory airspace monocytes that establish permissive lung niches for Mycobacterium tuberculosis. Corleis, Björn; Tzouanas, Constantine N; Wadsworth 2nd, Marc H; Cho, Josalyn L; Linder, Alice H; Schiff, Abigail E; Zessin, Björn; Stei, Fabian; Dorhoi, Anca; Dickey, Amy K; Medoff, Benjamin D; Shalek, Alex K; Kwon, Douglas S Science translational medicine 38055798 2023 Dec 06
Engineered Heterochronic Parabiosis in 3D Microphysiological System for Identification of Muscle Rejuvenating Factors. Lee, Yunki; Choi, Jeongmoon J; Ahn, Song Ih; Lee, Nan Hee; Han, Woojin M; Mohiuddin, Mahir; Shin, Eun Jung; Wood, Levi; Park, Ki Dong; Kim, YongTae; Jang, Young C Advanced functional materials 38053980 2020 Nov 11
Whole-brain mapping reveals the divergent impact of ketamine on the dopamine system. Datta, Malika S; Chen, Yannan; Chauhan, Shradha; Zhang, Jing; De La Cruz, Estanislao Daniel; Gong, Cheng; Tomer, Raju Cell reports 38052211 2023 Dec 26
A biotin targeting chimera (BioTAC) system to map small molecule interactomes in situ. Tao, Andrew J; Jiang, Jiewei; Gadbois, Gillian E; Goyal, Pavitra; Boyle, Bridget T; Mumby, Elizabeth J; Myers, Samuel A; English, Justin G; Ferguson, Fleur M Nature communications 38049406 2023 Dec 04
Biological factors and statistical limitations prevent detection of most noncanonical proteins by mass spectrometry. Wacholder, Aaron; Carvunis, Anne-Ruxandra PLoS biology 38048358 2023 Dec
Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes. Wang, Yihan; Armendariz, Daniel; Wang, Lei; Zhao, Huan; Xie, Shiqi; Hon, Gary C bioRxiv : the preprint server for biology 38045327 2023 Nov 20
A Foundation Model for Cell Segmentation. Israel, Uriah; Marks, Markus; Dilip, Rohit; Li, Qilin; Schwartz, Morgan; Pradhan, Elora; Pao, Edward; Li, Shenyi; Pearson-Goulart, Alexander; Perona, Pietro; Gkioxari, Georgia; Barnowski, Ross; Yue, Yisong; Van Valen, David bioRxiv : the preprint server for biology 38045277 2023 Nov 20
Cationic peptides erase memories by removing synaptic AMPA receptors through endophilin-mediated endocytosis. Stokes, Eric; Zhuang, Yinyin; Toledano, Michael; Vasquez, Jose; Azouz, Ghalia; Hui, May; Tyler, Isabella; Shi, Xiaoyu; Aoto, Jason; Beier, Kevin T Research square 38045269 2023 Nov 21
A global view of aging and Alzheimer's pathogenesis-associated cell population dynamics and molecular signatures in human and mouse brains. Sziraki, Andras; Lu, Ziyu; Lee, Jasper; Banyai, Gabor; Anderson, Sonya; Abdulraouf, Abdulraouf; Metzner, Eli; Liao, Andrew; Banfelder, Jason; Epstein, Alexander; Schaefer, Chloe; Xu, Zihan; Zhang, Zehao; Gan, Li; Nelson, Peter T; Zhou, Wei; Cao, Junyue Nature genetics 38036784 2023 Dec
Opto-Thermoelectric Tweezers: Principles and Applications. Pughazhendi, Agatian; Chen, Zhihan; Wu, Zilong; Li, Jingang; Zheng, Yuebing Frontiers in physics 38031585 2020
Broadband Forward Light Scattering by Architectural Design of Core-Shell Silicon Particles. De Marco, Maria Letizia; Jiang, Taizhi; Fang, Jie; Lacomme, Sabrina; Zheng, Yuebing; Baron, Alexandre; Korgel, Brian A; Barois, Philippe; Drisko, Glenna L; Aymonier, Cyril Advanced functional materials 38031546 2021 Jun 23
Deep Convolutional Mixture Density Network for Inverse Design of Layered Photonic Structures. Unni, Rohit; Yao, Kan; Zheng, Yuebing ACS photonics 38031541 2020 Oct 21
Modeling gut neuro-epithelial connections in a novel microfluidic device. de Hoyos-Vega, Jose M; Yu, Xi; Gonzalez-Suarez, Alan M; Chen, Sisi; Mercado-Perez, Arnaldo; Krueger, Eugene; Hernandez, Jeric; Fedyshyn, Yaroslav; Druliner, Brooke R; Linden, David R; Beyder, Arthur; Revzin, Alexander Microsystems & nanoengineering 38025883 2023
Aberrant splicing exonizes C9ORF72 repeat expansion in ALS/FTD. Yang, Suzhou; Wijegunawardana, Denethi; Sheth, Udit; Veire, Austin M; Salgado, Juliana M S; Agrawal, Manasi; Zhou, Jeffrey; Pereira, João D; Gendron, Tania F; Guo, Junjie U bioRxiv : the preprint server for biology 38014069 2023 Nov 14
Proximity Labeling Expansion Microscopy (PL-ExM) resolves structure of the interactome. Park, Sohyeon; Wang, Xiaorong; Li, Xiangpeng; Huang, Xiao; Fong, Katie C; Yu, Clinton; Tran, Arthur A; Scipioni, Lorenzo; Dai, Zhipeng; Huang, Lan; Shi, Xiaoyu bioRxiv : the preprint server for biology 38014020 2023 Nov 13
Olfactory learning alters navigation strategies and behavioral variability in C. elegans. Chen, Kevin S; Pillow, Jonathan W; Leifer, Andrew M ArXiv 38013890 2023 Nov 13
Efficient sex separation by exploiting differential alternative splicing of a dominant marker in Aedes aegypti. Weng, Shih-Che; Antoshechkin, Igor; Marois, Eric; Akbari, Omar S PLoS genetics 38011259 2023 Nov
Utility of Mycobacterium tuberculosis genome sequencing snapshots to assess transmission dynamics over time. Yuen, Courtney M; Huang, Chuan-Chin; Millones, Ana Karina; Calderon, Roger I; Manson, Abigail L; Jimenez, Judith; Contreras, Carmen; Earl, Ashlee M; Becerra, Mercedes C; Lecca, Leonid; Murray, Megan B The Journal of infectious diseases 37995298 2023 Nov 23
Distinct value computations support rapid sequential decisions. Mah, Andrew; Schiereck, Shannon S; Bossio, Veronica; Constantinople, Christine M Nature communications 37989741 2023 Nov 21
Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. Simmons, Chad R; Buchberger, Alex; Henry, Skylar J W; Novacek, Alexandra; Fahmi, Nour Eddine; MacCulloch, Tara; Stephanopoulos, Nicholas; Yan, Hao Journal of the American Chemical Society 37987645 2023 Dec 06
RNA structure modulates Cas13 activity and enables mismatch detection. Kimchi, Ofer; Larsen, Benjamin B; Dunkley, Owen R S; Te Velthuis, Aartjan J W; Myhrvold, Cameron bioRxiv : the preprint server for biology 37987004 2023 Nov 07
Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean. Taylor-Salmon, Emma; Hill, Verity; Paul, Lauren M; Koch, Robert T; Breban, Mallery I; Chaguza, Chrispin; Sodeinde, Afeez; Warren, Joshua L; Bunch, Sylvia; Cano, Natalia; Cone, Marshall; Eysoldt, Sarah; Garcia, Alezaundra; Gilles, Nicadia; Hagy, Andrew; Heberlein, Lea; Jaber, Rayah; Kassens, Elizabeth; Colarusso, Pamela; Davis, Amanda; Baudin, Samantha; Rico, Edhelene; Mejía-Echeverri, Álvaro; Scott, Blake; Stanek, Danielle; Zimler, Rebecca; Muñoz-Jordán, Jorge L; Santiago, Gilberto A; Adams, Laura E; Paz-Bailey, Gabriela; Spillane, Melanie; Katebi, Volha; Paulino-Ramírez, Robert; Mueses, Sayira; Peguero, Armando; Sánchez, Nelissa; Norman, Francesca F; Galán, Juan-Carlos; Huits, Ralph; Hamer, Davidson H; Vogels, Chantal B F; Morrison, Andrea; Michael, Scott F; Grubaugh, Nathan D medRxiv : the preprint server for health sciences 37986857 2023 Nov 12
Sequence-ensemble-function relationships for disordered proteins in live cells. Holehouse, Alex; Emenecker, Ryan; Guadalupe, Karina; Shamoon, Nora; Sukenik, Shahar Research square 37986812 2023 Nov 10
Inferring stochastic rates from heterogeneous snapshots of particle positions. Miles, Christopher E; McKinley, Scott A; Ding, Fangyuan; Lehoucq, Richard B ArXiv 37986720 2023 Nov 08
Hidden variables in stress neurobiology research. Holloway, Ashley L; Lerner, Talia N Trends in neurosciences 37985263 2024 Jan
Efficient Estimation under Data Fusion. Li, Sijia; Luedtke, Alex Biometrika 37982010 2023 Dec
Intraspecific Variation of Transposable Elements Reveals Differences in the Evolutionary History of Fungal Phytopathogen Pathotypes. Nakamoto, Anne A; Joubert, Pierre M; Krasileva, Ksenia V Genome biology and evolution 37975814 2023 Dec 01
Improved inference for vaccine-induced immune responses via shape-constrained methods. Laha, Nilanjana; Moodie, Zoe; Huang, Ying; Luedtke, Alex Electronic journal of statistics 37974631 2022
A nanobody-based strategy for rapid and scalable purification of human protein complexes. Stevens, Taylor Anthony; Tomaleri, Giovani Pinton; Hazu, Masami; Wei, Sophia; Nguyen, Vy N; DeKalb, Charlene; Voorhees, Rebecca M; Pleiner, Tino Nature protocols 37974029 2024 Jan
Mechanism of target site selection by type V-K CRISPR-associated transposases. George, Jerrin Thomas; Acree, Christopher; Park, Jung-Un; Kong, Muwen; Wiegand, Tanner; Pignot, Yanis Luca; Kellogg, Elizabeth H; Greene, Eric C; Sternberg, Samuel H Science (New York, N.Y.) 37972161 2023 Nov 17
Single-cell, whole-embryo phenotyping of mammalian developmental disorders. Huang, Xingfan; Henck, Jana; Qiu, Chengxiang; Sreenivasan, Varun K A; Balachandran, Saranya; Amarie, Oana V; Hrabě de Angelis, Martin; Behncke, Rose Yinghan; Chan, Wing-Lee; Despang, Alexandra; Dickel, Diane E; Duran, Madeleine; Feuchtinger, Annette; Fuchs, Helmut; Gailus-Durner, Valerie; Haag, Natja; Hägerling, Rene; Hansmeier, Nils; Hennig, Friederike; Marshall, Cooper; Rajderkar, Sudha; Ringel, Alessa; Robson, Michael; Saunders, Lauren M; da Silva-Buttkus, Patricia; Spielmann, Nadine; Srivatsan, Sanjay R; Ulferts, Sascha; Wittler, Lars; Zhu, Yiwen; Kalscheuer, Vera M; Ibrahim, Daniel M; Kurth, Ingo; Kornak, Uwe; Visel, Axel; Pennacchio, Len A; Beier, David R; Trapnell, Cole; Cao, Junyue; Shendure, Jay; Spielmann, Malte Nature 37968388 2023 Nov
Leveraging vaccination-induced protective antibodies to define conserved epitopes on influenza N2 neuraminidase. Lei, Ruipeng; Kim, Wooseob; Lv, Huibin; Mou, Zongjun; Scherm, Michael J; Schmitz, Aaron J; Turner, Jackson S; Tan, Timothy J C; Wang, Yiquan; Ouyang, Wenhao O; Liang, Weiwen; Rivera-Cardona, Joel; Teo, Chuyun; Graham, Claire S; Brooke, Christopher B; Presti, Rachel M; Mok, Chris K P; Krammer, Florian; Dai, Xinghong; Ellebedy, Ali H; Wu, Nicholas C Immunity 37967533 2023 Nov 14
Clinically relevant antibiotic resistance genes are linked to a limited set of taxa within gut microbiome worldwide. Diebold, Peter J; Rhee, Matthew W; Shi, Qiaojuan; Trung, Nguyen Vinh; Umrani, Fayaz; Ahmed, Sheraz; Kulkarni, Vandana; Deshpande, Prasad; Alexander, Mallika; Thi Hoa, Ngo; Christakis, Nicholas A; Iqbal, Najeeha Talat; Ali, Syed Asad; Mathad, Jyoti S; Brito, Ilana L Nature communications 37963868 2023 Nov 14
Spatially resolved DNP-assisted NMR illuminates the conformational ensemble of α-synuclein in intact viable cells. Kragelj, Jaka; Ghosh, Rupam; Xiao, Yiling; Dumarieh, Rania; Lagasca, Dominique; Krishna, Sakshi; Frederick, Kendra K bioRxiv : the preprint server for biology 37961511 2023 Oct 25
Structure of the human heparan-α-glucosaminide N-acetyltransferase (HGSNAT). Navratna, Vikas; Kumar, Arvind; Mosalaganti, Shyamal bioRxiv : the preprint server for biology 37961489 2023 Oct 26
The shared genetic architecture and evolution of human language and musical rhythm. Alagöz, Gökberk; Eising, Else; Mekki, Yasmina; Bignardi, Giacomo; Fontanillas, Pierre; 23andMe Research Team; Nivard, Michel G; Luciano, Michelle; Cox, Nancy J; Fisher, Simon E; Gordon, Reyna L bioRxiv : the preprint server for biology 37961248 2023 Nov 02
Breast Cancer Macrophage Heterogeneity and Self-renewal are Determined by Spatial Localization. Ben-Chetrit, Nir; Niu, Xiang; Sotelo, Jesus; Swett, Ariel D; Rajasekhar, Vinagolu K; Jiao, Maria S; Stewart, Caitlin M; Bhardwaj, Priya; Kottapalli, Sanjay; Ganesan, Saravanan; Loyher, Pierre-Louis; Potenski, Catherine; Hannuna, Assaf; Brown, Kristy A; Iyengar, Neil M; Giri, Dilip D; Lowe, Scott W; Healey, John H; Geissmann, Frederic; Sagi, Irit; Joyce, Johanna A; Landau, Dan A bioRxiv : the preprint server for biology 37961223 2023 Oct 27
Engineering Tripartite Gene Editing Machinery for Highly Efficient Non-Viral Targeted Genome Integration. Nam, Hangu; Xie, Keqiang; Majumdar, Ishita; Yang, Shaobo; Starzyk, Jakob; Lee, Danna; Shan, Richard; Li, Jiahe; Wu, Hao Research square 37961210 2023 Oct 23
Development of neural circuits for social motion perception in schooling fish. Zada, David; Schulze, Lisanne; Yu, Jo-Hsien; Tarabishi, Princess; Napoli, Julia L; Lovett-Barron, Matthew bioRxiv : the preprint server for biology 37961196 2023 Oct 27
A Germline Point Mutation in the MYC-FBW7 Phosphodegron Initiates Hematopoietic Malignancies. Freie, Brian; Carroll, Patrick A; Varnum-Finney, Barbara J; Ramani, Vijay; Bernstein, Irwin; Eisenman, Robert N bioRxiv : the preprint server for biology 37961183 2023 Oct 25
Structure-Aware Annotation of Leucine-rich Repeat Domains. Xu, Boyan; Cerbu, Alois; Lim, Daven; Tralie, Christopher J; Krasileva, Ksenia bioRxiv : the preprint server for biology 37961157 2023 Nov 01
Comparative profiling of cellular gait on adhesive micropatterns defines statistical patterns of activity that underlie native and cancerous cell dynamics. Ahn, John C; Coyle, Scott M bioRxiv : the preprint server for biology 37961146 2023 Oct 27
Sequence-ensemble-function relationships for disordered proteins in live cells. Emenecker, Ryan J; Guadalupe, Karina; Shamoon, Nora M; Sukenik, Shahar; Holehouse, Alex S bioRxiv : the preprint server for biology 37961106 2023 Nov 13
LEF1 isoforms regulate cellular senescence and aging. Jia, Minxue; Sayed, Khaled; Kapetanaki, Maria G; Dion, William; Rosas, Lorena; Irfan, Saad; Valenzi, Eleanor; Mora, Ana L; Lafyatis, Robert A; Rojas, Mauricio; Zhu, Bokai; Benos, Panayiotis V Aging cell 37961030 2023 Dec
Melanopsin activates divergent phototransduction pathways in intrinsically photosensitive retinal ganglion cell subtypes. Contreras, Ely; Bhoi, Jacob D; Sonoda, Takuma; Birnbaumer, Lutz; Schmidt, Tiffany M eLife 37937828 2023 Nov 08
The chromatin landscape of the euryarchaeon Haloferax volcanii. Marinov, Georgi K; Bagdatli, S Tansu; Wu, Tong; He, Chuan; Kundaje, Anshul; Greenleaf, William J Genome biology 37932847 2023 Nov 06
Three linked variants have opposing regulatory effects on isovaleryl-CoA dehydrogenase gene expression. Brown, Elizabeth A; Kales, Susan; Boyle, Michael James; Vitti, Joseph; Kotliar, Dylan; Schaffner, Steve; Tewhey, Ryan; Sabeti, Pardis C Human molecular genetics 37930192 2023 Oct 31
AgRP neuron activity promotes associations between sensory and nutritive signals to guide flavor preference. Nyema, Nathaniel T; McKnight, Aaron D; Vargas-Elvira, Alexandra G; Schneps, Heather M; Gold, Elizabeth G; Myers, Kevin P; Alhadeff, Amber L Molecular metabolism 37925021 2023 Dec
Generation of glucocorticoid-producing cells derived from human pluripotent stem cells. Ruiz-Babot, Gerard; Eceiza, Ariane; Abollo-Jiménez, Fernando; Malyukov, Maria; Carlone, Diana L; Borges, Kleiton; Da Costa, Alexandra Rodrigues; Qarin, Shamma; Matsumoto, Takuya; Morizane, Ryuji; Skarnes, William C; Ludwig, Barbara; Chapple, Paul J; Guasti, Leonardo; Storr, Helen L; Bornstein, Stefan R; Breault, David T Cell reports methods 37924815 2023 Nov 20
Pyramidal hyperbolic metasurfaces enhance spontaneous emission of nitrogen-vacancy centers in nanodiamond. Zheng, Peng; Liang, Le; Arora, Saransh; Ray, Krishanu; Semancik, Steve; Barman, Ishan Advanced optical materials 37920689 2023 Mar 17
A high-throughput and low-waste viability assay for microbes. Meyer, Christian T; Lynch, Grace K; Stamo, Dana F; Miller, Eugene J; Chatterjee, Anushree; Kralj, Joel M Nature microbiology 37919425 2023 Dec
A neurodegeneration checkpoint mediated by REST protects against the onset of Alzheimer's disease. Aron, Liviu; Qiu, Chenxi; Ngian, Zhen Kai; Liang, Marianna; Drake, Derek; Choi, Jaejoon; Fernandez, Marty A; Roche, Perle; Bunting, Emma L; Lacey, Ella K; Hamplova, Sara E; Yuan, Monlan; Wolfe, Michael S; Bennett, David A; Lee, Eunjung A; Yankner, Bruce A Nature communications 37919281 2023 Nov 02
Super-resolution microscopy: Insights into mitochondria-lysosome crosstalk in health and disease. Leisten, Eric D; Woods, Abby C; Wong, Yvette C The Journal of cell biology 37917024 2023 Dec 04
Phosphatase specificity principles uncovered by MRBLE:Dephos and global substrate identification. Hein, Jamin B; Nguyen, Hieu T; Garvanska, Dimitriya H; Nasa, Isha; Kruse, Thomas; Feng, Yinnian; Lopez Mendez, Blanca; Davey, Norman; Kettenbach, Arminja N; Fordyce, Polly M; Nilsson, Jakob Molecular systems biology 37916966 2023 Dec 06
Anti-inflammatory effects of hunger are transmitted to the periphery via projection-specific AgRP circuits. Klima, Michelle L; Kruger, Kayla A; Goldstein, Nitsan; Pulido, Santiago; Low, Aloysius Y T; Assenmacher, Charles-Antoine; Alhadeff, Amber L; Betley, J Nicholas Cell reports 37910501 2023 Nov 28
Versatility and stability optimization of flow-focusing droplet generators via quality metric-driven design automation. McIntyre, David; Lashkaripour, Ali; Arguijo, Diana; Fordyce, Polly; Densmore, Douglas Lab on a chip 37909215 2023 Nov 21
Infernape uncovers cell type-specific and spatially resolved alternative polyadenylation in the brain. Kang, Bowei; Yang, Yalan; Hu, Kaining; Ruan, Xiangbin; Liu, Yi-Lin; Lee, Pinky; Lee, Jasper; Wang, Jingshu; Zhang, Xiaochang Genome research 37907328 2023 Oct
Neural activity ramps in frontal cortex signal extended motivation during learning. Regalado, Josue M; Asensio, Ariadna Corredera; Haunold, Theresa; Toader, Andrew C; Li, Yan Ran; Neal, Lauren A; Rajasethupathy, Priya bioRxiv : the preprint server for biology 37905153 2023 Oct 17
Pan-cancer analysis reveals multifaceted roles of retrotransposon-fusion RNAs. Lee, Boram; Park, Junseok; Voshall, Adam; Maury, Eduardo; Kang, Yeeok; Kim, Yoen Jeong; Lee, Jin-Young; Shim, Hye-Ran; Kim, Hyo-Ju; Lee, Jung-Woo; Jung, Min-Hyeok; Kim, Si-Cho; Chu, Hoang Bao Khanh; Kim, Da-Won; Kim, Minjeong; Choi, Eun-Ji; Hwang, Ok Kyung; Lee, Ho Won; Ha, Kyungsoo; Choi, Jung Kyoon; Kim, Yongjoon; Choi, Yoonjoo; Park, Woong-Yang; Lee, Eunjung Alice bioRxiv : the preprint server for biology 37905014 2023 Oct 19
BTSP, not STDP, Drives Shifts in Hippocampal Representations During Familiarization. Madar, A D; Dong, C; Sheffield, M E J bioRxiv : the preprint server for biology 37904999 2023 Oct 17
A dual sgRNA library design to probe genetic modifiers using genome-wide CRISPRi screens. Guna, Alina; Page, Katharine R; Replogle, Joseph M; Esantsi, Theodore K; Wang, Maxine L; Weissman, Jonathan S; Voorhees, Rebecca M BMC genomics 37904134 2023 Oct 30
A pan-tissue survey of mosaic chromosomal alterations in 948 individuals. Gao, Teng; Kastriti, Maria Eleni; Ljungström, Viktor; Heinzel, Andreas; Tischler, Arthur S; Oberbauer, Rainer; Loh, Po-Ru; Adameyko, Igor; Park, Peter J; Kharchenko, Peter V Nature genetics 37904053 2023 Nov
Constructing within and between hospital physician social networks for modeling physician research participation. Bobak, Carly A; Mohan, Deepika; Murphy, Megan A; Barnato, Amber E; O'Malley, A James BMC medical research methodology 37898745 2023 Oct 28
Conductive electrospun polymer improves stem cell-derived cardiomyocyte function and maturation. Gonzalez, Gisselle; Nelson, Aileena C; Holman, Alyssa R; Whitehead, Alexander J; LaMontagne, Erin; Lian, Rachel; Vatsyayan, Ritwik; Dayeh, Shadi A; Engler, Adam J Biomaterials 37898021 2023 Nov
Acetylcholine waves and dopamine release in the striatum. Matityahu, Lior; Gilin, Naomi; Sarpong, Gideon A; Atamna, Yara; Tiroshi, Lior; Tritsch, Nicolas X; Wickens, Jeffery R; Goldberg, Joshua A Nature communications 37891198 2023 Oct 27
Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons. Yang, Yalan; Yang, Runwei; Kang, Bowei; Qian, Sheng; He, Xin; Zhang, Xiaochang Cell reports 37889749 2023 Nov 28
CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes. Adler, Benjamin A; Trinidad, Marena I; Bellieny-Rabelo, Daniel; Zhang, Elaine; Karp, Hannah M; Skopintsev, Petr; Thornton, Brittney W; Weissman, Rachel F; Yoon, Peter H; Chen, LinXing; Hessler, Tomas; Eggers, Amy R; Colognori, David; Boger, Ron; Doherty, Erin E; Tsuchida, Connor A; Tran, Ryan V; Hofman, Laura; Shi, Honglue; Wasko, Kevin M; Zhou, Zehan; Xia, Chenglong; Al-Shimary, Muntathar J; Patel, Jaymin R; Thomas, Vienna C J X; Pattali, Rithu; Kan, Matthew J; Vardapetyan, Anna; Yang, Alana; Lahiri, Arushi; Maxwell, Micaela F; Murdock, Andrew G; Ramit, Glenn C; Henderson, Hope R; Calvert, Roland W; Bamert, Rebecca S; Knott, Gavin J; Lapinaite, Audrone; Pausch, Patrick; Cofsky, Joshua C; Sontheimer, Erik J; Wiedenheft, Blake; Fineran, Peter C; Brouns, Stan J J; Sashital, Dipali G; Thomas, Brian C; Brown, Christopher T; Goltsman, Daniela S A; Barrangou, Rodolphe; Siksnys, Virginius; Banfield, Jillian F; Savage, David F; Doudna, Jennifer A Nucleic acids research 37889041 2024 Jan 05
Genome editing with retroelements. Tang, Stephen; Sternberg, Samuel H Science (New York, N.Y.) 37883564 2023 Oct 27
Deep mutational scanning reveals the functional constraints and evolutionary potential of the influenza A virus PB1 protein. Li, Yuan; Arcos, Sarah; Sabsay, Kimberly R; Te Velthuis, Aartjan J W; Lauring, Adam S Journal of virology 37882522 2023 Nov 30
A thalamic-hippocampal CA1 signal for contextual fear memory suppression, extinction, and discrimination. Ratigan, Heather C; Krishnan, Seetha; Smith, Shai; Sheffield, Mark E J Nature communications 37875465 2023 Oct 24
A Rapid Antibody Enhancement Platform in Saccharomyces cerevisiae Using an Improved, Diversifying CRISPR Base Editor. Cazier, Andrew P; Irvin, Olivia M; Chávez, Lizmarie S; Dalvi, Saachi; Abraham, Hannah; Wickramanayake, Nevinka; Yellayi, Sreenivas; Blazeck, John ACS synthetic biology 37873982 2023 Nov 17
Reprogramming megakaryocytes to engineer platelets as delivery vehicles. Javdan, Shwan B; Islam, Farhana; Deans, Tara L bioRxiv : the preprint server for biology 37873465 2023 Oct 14
Stem cell-specific ecdysone signaling regulates the development and function of a Drosophila sleep homeostat. Wani, Adil R; Chowdhury, Budhaditya; Luong, Jenny; Chaya, Gonzalo Morales; Patel, Krishna; Isaacman-Beck, Jesse; Shafer, Orie; Kayser, Matthew S; Syed, Mubarak Hussain bioRxiv : the preprint server for biology 37873323 2023 Oct 02
Scaling cross-tissue single-cell annotation models. Fischer, Felix; Fischer, David S; Biederstedt, Evan; Villani, Alexandra-Chloé; Theis, Fabian J bioRxiv : the preprint server for biology 37873298 2023 Oct 10
DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus. Vogels, Chantal B F; Hill, Verity; Breban, Mallery I; Chaguza, Chrispin; Paul, Lauren M; Sodeinde, Afeez; Taylor-Salmon, Emma; Ott, Isabel M; Petrone, Mary E; Dijk, Dennis; Jonges, Marcel; Welkers, Matthijs R A; Locksmith, Timothy; Dong, Yibo; Tarigopula, Namratha; Tekin, Omer; Schmedes, Sarah; Bunch, Sylvia; Cano, Natalia; Jaber, Rayah; Panzera, Charles; Stryker, Ian; Vergara, Julieta; Zimler, Rebecca; Kopp, Edgar; Heberlein, Lea; Morrison, Andrea M; Michael, Scott F; Grubaugh, Nathan D medRxiv : the preprint server for health sciences 37873191 2023 Oct 13
Neuronal "parts list" and wiring diagram for a visual system. Matsliah, Arie; Yu, Szi-Chieh; Kruk, Krzysztof; Bland, Doug; Burke, Austin; Gager, Jay; Hebditch, James; Silverman, Ben; Willie, Kyle; Willie, Ryan; Sorek, Marissa; Sterling, Amy R; Kind, Emil; Garner, Dustin; Sancer, Gizem; Wernet, Mathias; Kim, Sung Soo; Murthy, Mala; Seung, H Sebastian; FlyWire Consortium bioRxiv : the preprint server for biology 37873160 2023 Dec 04
Commensal myeloid crosstalk in neonatal skin regulates long-term cutaneous type 17 inflammation. Dhariwala, Miqdad O; DeRogatis, Andrea M; Okoro, Joy N; Weckel, Antonin; Tran, Victoria M; Habrylo, Irek; Ojewumi, Oluwasunmisola T; Tammen, Allison E; Leech, John M; Merana, Geil R; Carale, Ricardo O; Barrere-Cain, Rio; Hiam-Galvez, Kamir J; Spitzer, Matthew H; Scharschmidt, Tiffany C bioRxiv : the preprint server for biology 37873143 2023 Oct 02
Site-specific arrangement and structure determination of minor groove binding molecules in self-assembled three-dimensional DNA crystals. Simmons, Chad R; Buchberger, Alex; Henry, Skylar J W; Novacek, Alexandra; Fahmi, Nour Eddine; MacCulloch, Tara; Stephanopoulos, Nicholas; Yan, Hao bioRxiv : the preprint server for biology 37873139 2023 Oct 11
An Activity-Based Nanosensor for Minimally-Invasive Measurement of Protease Activity in Traumatic Brain Injury. Kudryashev, Julia A; Madias, Marianne I; Kandell, Rebecca M; Lin, Queenie X; Kwon, Ester J Advanced functional materials 37873031 2023 Jul 11
Gradient Descent Provably Solves Nonlinear Tomographic Reconstruction. Fridovich-Keil, Sara; Valdivia, Fabrizio; Wetzstein, Gordon; Recht, Benjamin; Soltanolkotabi, Mahdi ArXiv 37873016 2023 Oct 06
RNA molecular recording with an engineered RNA deaminase. Lin, Yizhu; Kwok, Samentha; Hein, Abigail E; Thai, Bao Quoc; Alabi, Yewande; Ostrowski, Megan S; Wu, Ke; Floor, Stephen N Nature methods 37857907 2023 Dec
High-Affinity Host-Guest Recognition for Efficient Assembly and Enzymatic Responsiveness of DNA Nanostructures. Narayanan, Raghu Pradeep; Prasad, Abhay; Buchberger, Alex; Zou, Lei; Bernal-Chanchavac, Julio; MacCulloch, Tara; Fahmi, Nour Eddine; Yan, Hao; Zhang, Fei; Webber, Matthew J; Stephanopoulos, Nicholas Small (Weinheim an der Bergstrasse, Germany) 37849034 2023 Oct 17
Serotonin reduction in post-acute sequelae of viral infection. Wong, Andrea C; Devason, Ashwarya S; Umana, Iboro C; Cox, Timothy O; Dohnalová, Lenka; Litichevskiy, Lev; Perla, Jonathan; Lundgren, Patrick; Etwebi, Zienab; Izzo, Luke T; Kim, Jihee; Tetlak, Monika; Descamps, Hélène C; Park, Simone L; Wisser, Stephen; McKnight, Aaron D; Pardy, Ryan D; Kim, Junwon; Blank, Niklas; Patel, Shaan; Thum, Katharina; Mason, Sydney; Beltra, Jean-Christophe; Michieletto, Michaël F; Ngiow, Shin Foong; Miller, Brittany M; Liou, Megan J; Madhu, Bhoomi; Dmitrieva-Posocco, Oxana; Huber, Alex S; Hewins, Peter; Petucci, Christopher; Chu, Candice P; Baraniecki-Zwil, Gwen; Giron, Leila B; Baxter, Amy E; Greenplate, Allison R; Kearns, Charlotte; Montone, Kathleen; Litzky, Leslie A; Feldman, Michael; Henao-Mejia, Jorge; Striepen, Boris; Ramage, Holly; Jurado, Kellie A; Wellen, Kathryn E; O'Doherty, Una; Abdel-Mohsen, Mohamed; Landay, Alan L; Keshavarzian, Ali; Henrich, Timothy J; Deeks, Steven G; Peluso, Michael J; Meyer, Nuala J; Wherry, E John; Abramoff, Benjamin A; Cherry, Sara; Thaiss, Christoph A; Levy, Maayan Cell 37848036 2023 Oct 26
Single-nucleotide variants within heart enhancers increase binding affinity and disrupt heart development. Jindal, Granton A; Bantle, Alexis T; Solvason, Joe J; Grudzien, Jessica L; D'Antonio-Chronowska, Agnieszka; Lim, Fabian; Le, Sophia H; Song, Benjamin P; Ragsac, Michelle F; Klie, Adam; Larsen, Reid O; Frazer, Kelly A; Farley, Emma K Developmental cell 37848026 2023 Nov 06
β-Adrenergic Signaling Promotes Morphological Maturation of Astrocytes in Female Mice. Rosenberg, Marci F; Godoy, Marlesa I; Wade, Sarah D; Paredes, Mercedes F; Zhang, Ye; Molofsky, Anna V The Journal of neuroscience : the official journal of the Society for Neuroscience 37845031 2023 Dec 13
Integration of an LPAR1 Antagonist into Liposomes Enhances Their Internalization and Tumor Accumulation in an Animal Model of Human Metastatic Breast Cancer. Abdelmessih, Rudolf G; Xu, Jiaming; Hung, Francisco R; Auguste, Debra T Molecular pharmaceutics 37844135 2023 Nov 06
Mechanisms of Regeneration and Fibrosis in the Endometrium. Ang, Claire J; Skokan, Taylor D; McKinley, Kara L Annual review of cell and developmental biology 37843929 2023 Oct 16
The mixing method used to formulate lipid nanoparticles affects mRNA delivery efficacy and organ tropism. Strelkova Petersen, Daria M; Chaudhary, Namit; Arral, Mariah L; Weiss, Ryan M; Whitehead, Kathryn A European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V 37838143 2023 Nov
Hyperspectral Raman Imaging for Automated Recognition of Human Renal Amyloid. Kim, Jeong Hee; Zhang, Chi; Sperati, C John; Barman, Ishan; Bagnasco, Serena M The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society 37833851 2023 Nov
Synthetic augmentation of bilirubin metabolism in human pluripotent stem cell-derived liver organoids. Reza, Hasan Al; Farooqui, Zishaan; Reza, Abid Al; Conroy, Callen; Iwasawa, Kentaro; Ogura, Yasuhiro; Okita, Keisuke; Osafune, Kenji; Takebe, Takanori Stem cell reports 37832542 2023 Nov 14
Cytoplasmic division cycles without the nucleus and mitotic CDK/cyclin complexes. Bakshi, Anand; Iturra, Fabio Echegaray; Alamban, Andrew; Rosas-Salvans, Miquel; Dumont, Sophie; Aydogan, Mustafa G Cell 37832525 2023 Oct 12
The Role of Endothelial Cells in Atherosclerosis: Insights from Genetic Association Studies. Pepin, Mark E; Gupta, Rajat The American journal of pathology 37827214 2023 Oct 10
A chemically-defined growth medium to support Lactobacillus-Acetobacter sp. community analysis. Aumiller, Kevin; Scheffler, Robert; Stevens, Eric T; Güvener, Zehra T; Tung, Emily; Grimaldo, Anna B; Carlson, Hans K; Deutschbauer, Adam M; Taga, Michiko E; Marco, Maria L; Ludington, William B PloS one 37824485 2023
Concurrent Targeting of HDAC and PI3K to Overcome Phenotypic Heterogeneity of Castration-resistant and Neuroendocrine Prostate Cancers. Zhang, Ailin; Lau, Nathan A; Wong, Alicia; Brown, Lisha G; Coleman, Ilsa M; De Sarkar, Navonil; Li, Dapei; DeLucia, Diana C; Labrecque, Mark P; Nguyen, Holly M; Conner, Jennifer L; Dumpit, Ruth F; True, Lawrence D; Lin, Daniel W; Corey, Eva; Alumkal, Joshi J; Nelson, Peter S; Morrissey, Colm; Lee, John K Cancer research communications 37823778 2023 Nov 20
Theoretical analysis reveals a role for RAF conformational autoinhibition in paradoxical activation. Mendiratta, Gaurav; Stites, Edward eLife 37823369 2023 Oct 12
Engineered Extracellular Vesicle-Based Therapies for Valvular Heart Disease. Salazar-Puerta, Ana I; Kordowski, Mia; Cuellar-Gaviria, Tatiana Z; Rincon-Benavides, Maria A; Hussein, Jad; Flemister, Dorma; Mayoral-Andrade, Gabriel; Barringer, Grant; Guilfoyle, Elizabeth; Blackstone, Britani N; Deng, Binbin; Zepeda-Orozco, Diana; McComb, David W; Powell, Heather; Dasi, Lakshmi P; Gallego-Perez, Daniel; Higuita-Castro, Natalia Cellular and molecular bioengineering 37810997 2023 Aug
Bacterial antiviral defense pathways encode eukaryotic-like ubiquitination systems. Chambers, Lydia R; Ye, Qiaozhen; Cai, Jiaxi; Gong, Minheng; Ledvina, Hannah E; Zhou, Huilin; Whiteley, Aaron T; Suhandynata, Raymond T; Corbett, Kevin D bioRxiv : the preprint server for biology 37808811 2023 Sep 26
Exploring the role of the private sector in tuberculosis detection and management in Lima, Peru: a mixed-methods patient pathway analysis. Wippel, Christoph; Farroñay, Sheyla; Gilbert, Hannah N; Millones, Ana Karina; Acosta, Diana; Torres, Isabel; Jimenez, Judith; Lecca, Leonid; Yuen, Courtney M medRxiv : the preprint server for health sciences 37808756 2023 Sep 29
AMPK Regulates Phagophore-to-Autophagosome Maturation. Barnaba, Carlo; Broadbent, David G; Perez, Gloria I; Schmidt, Jens C bioRxiv : the preprint server for biology 37808644 2023 Sep 30
Upregulation of exosome secretion from tumor-associated macrophages plays a key role in the suppression of anti-tumor immunity. Zhong, Wenqun; Lu, Youtao; Han, Xuexiang; Yang, Jingbo; Qin, Zhiyuan; Zhang, Wei; Yu, Ziyan; Wu, Bin; Liu, Shujing; Xu, Wei; Zheng, Cathy; Schuchter, Lynn M; Karakousis, Giorgos C; Mitchell, Tara C; Amaravadi, Ravi; Flowers, Ahron J; Gimotty, Phyllis A; Xiao, Min; Mills, Gordon; Herlyn, Meenhard; Dong, Haidong; Mitchell, Michael J; Kim, Junhyong; Xu, Xiaowei; Guo, Wei Cell reports 37805922 2023 Oct 31
Heterozygous deletion of the autism-associated gene CHD8 impairs synaptic function through widespread changes in gene expression and chromatin compaction. Shi, Xi; Lu, Congyi; Corman, Alba; Nikish, Alexandra; Zhou, Yang; Platt, Randy J; Iossifov, Ivan; Zhang, Feng; Pan, Jen Q; Sanjana, Neville E American journal of human genetics 37802044 2023 Oct 05
Complement factor D targeting protects endotheliopathy in organoid and monkey models of COVID-19. Kawakami, Eri; Saiki, Norikazu; Yoneyama, Yosuke; Moriya, Chiharu; Maezawa, Mari; Kawamura, Shuntaro; Kinebuchi, Akiko; Kono, Tamaki; Funata, Masaaki; Sakoda, Ayaka; Kondo, Shigeru; Ebihara, Takeshi; Matsumoto, Hisatake; Togami, Yuki; Ogura, Hiroshi; Sugihara, Fuminori; Okuzaki, Daisuke; Kojima, Takashi; Deguchi, Sayaka; Vallee, Sebastien; McQuade, Susan; Islam, Rizwana; Natarajan, Madhusudan; Ishigaki, Hirohito; Nakayama, Misako; Nguyen, Cong Thanh; Kitagawa, Yoshinori; Wu, Yunheng; Mori, Kensaku; Hishiki, Takayuki; Takasaki, Tomohiko; Itoh, Yasushi; Takayama, Kazuo; Nio, Yasunori; Takebe, Takanori Cell stem cell 37802037 2023 Oct 05
Protective effect of pre-existing natural immunity in a nonhuman primate reinfection model of congenital cytomegalovirus infection. Moström, Matilda J; Yu, Shan; Tran, Dollnovan; Saccoccio, Frances M; Versoza, Cyril J; Malouli, Daniel; Mirza, Anne; Valencia, Sarah; Gilbert, Margaret; Blair, Robert V; Hansen, Scott; Barry, Peter; Früh, Klaus; Jensen, Jeffrey D; Pfeifer, Susanne P; Kowalik, Timothy F; Permar, Sallie R; Kaur, Amitinder PLoS pathogens 37796819 2023 Oct
PAM-flexible genome editing with an engineered chimeric Cas9. Zhao, Lin; Koseki, Sabrina R T; Silverstein, Rachel A; Amrani, Nadia; Peng, Christina; Kramme, Christian; Savic, Natasha; Pacesa, Martin; Rodríguez, Tomás C; Stan, Teodora; Tysinger, Emma; Hong, Lauren; Yudistyra, Vivian; Ponnapati, Manvitha R; Jacobson, Joseph M; Church, George M; Jakimo, Noah; Truant, Ray; Jinek, Martin; Kleinstiver, Benjamin P; Sontheimer, Erik J; Chatterjee, Pranam Nature communications 37794046 2023 Oct 04
Microanalytical Mass Spectrometry with Super-Resolution Microscopy Reveals a Proteome Transition During Development of the Brain's Circadian Pacemaker. Choi, Sam B; Vatan, Tarlan; Alexander, Theresa A; Zhang, Chenghang; Mitchell, Shyrice M; Speer, Colenso M; Nemes, Peter Analytical chemistry 37792996 2023 Oct 17
Paralysis by analysis: Overcoming cardiac contraction with computer vision. Christoph, Jan; Ripplinger, Crystal M Proceedings of the National Academy of Sciences of the United States of America 37792520 2023 Oct 17
Immune Responses in Checkpoint Myocarditis Across Heart, Blood, and Tumor. Blum, Steven M; Zlotoff, Daniel A; Smith, Neal P; Kernin, Isabela J; Ramesh, Swetha; Zubiri, Leyre; Caplin, Joshua; Samanta, Nandini; Martin, Sidney C; Tirard, Alice; Sen, Pritha; Song, Yuhui; Barth, Jaimie; Slowikowski, Kamil; Nasrallah, Mazen; Tantivit, Jessica; Manakongtreecheep, Kasidet; Arnold, Benjamin Y; McGuire, John; Pinto, Christopher J; McLoughlin, Daniel; Jackson, Monica; Chan, PuiYee; Lawless, Aleigha; Sharova, Tatyana; Nieman, Linda T; Gainor, Justin F; Juric, Dejan; Mino-Kenudsen, Mari; Sullivan, Ryan J; Boland, Genevieve M; Stone, James R; Thomas, Molly F; Neilan, Tomas G; Reynolds, Kerry L; Villani, Alexandra-Chloé bioRxiv : the preprint server for biology 37790460 2023 Nov 29
Signaling dynamics distinguish high- and low-priority neutrophil chemoattractant receptors. Lundgren, Stefan M; Rocha-Gregg, Briana L; Akdoğan, Emel; Mysore, Maya N; Hayes, Samantha; Collins, Sean R Science signaling 37788324 2023 Oct 03
Energetic Demands Regulate Sleep-Wake Rhythm Circuit Development. Poe, Amy R; Zhu, Lucy; Tang, Si Hao; Valencia, Ella; Kayser, Matthew S bioRxiv : the preprint server for biology 37786713 2023 Sep 22
AgRP neuron activity promotes associations between sensory and nutritive signals to guide flavor preference. Nyema, Nathaniel T; McKnight, Aaron D; Vargas-Elvira, Alexandra G; Schneps, Heather M; Gold, Elizabeth G; Myers, Kevin P; Alhadeff, Amber L bioRxiv : the preprint server for biology 37786670 2023 Sep 22
Multidimensional Super-Resolution Microscopy Unveils Nanoscale Surface Aggregates in the Aging of FUS Condensates. He, Changdong; Wu, Chun Ying; Li, Wan; Xu, Ke Journal of the American Chemical Society 37782826 2023 Nov 08
Widespread impact of immunoglobulin V-gene allelic polymorphisms on antibody reactivity. Yuan, Meng; Feng, Ziqi; Lv, Huibin; So, Natalie; Shen, Ivana R; Tan, Timothy J C; Teo, Qi Wen; Ouyang, Wenhao O; Talmage, Logan; Wilson, Ian A; Wu, Nicholas C Cell reports 37777966 2023 Oct 31
Formulation of Chitosan-Zein Nano-in-Microparticles for Oral DNA Delivery. Heck, Kari; Farris, Eric; Pannier, Angela K Methods in molecular biology (Clifton, N.J.) 37775665 2024
Tracking cell-type-specific temporal dynamics in human and mouse brains. Lu, Ziyu; Zhang, Melissa; Lee, Jasper; Sziraki, Andras; Anderson, Sonya; Zhang, Zehao; Xu, Zihan; Jiang, Weirong; Ge, Shaoyu; Nelson, Peter T; Zhou, Wei; Cao, Junyue Cell 37774676 2023 Sep 28
On the path to predicting immune responses in the lung: Modeling the pulmonary innate immune system at the air-liquid interface (ALI). Graf, Jodi; Trautmann-Rodriguez, Michael; Sabnis, Simone; Kloxin, April M; Fromen, Catherine A European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences 37770004 2023 Dec 01
An exhaustive multiple knockout approach to understanding cell wall hydrolase function in Bacillus subtilis. Wilson, Sean A; Tank, Raveen K J; Hobbs, Jamie K; Foster, Simon J; Garner, Ethan C mBio 37768080 2023 Oct 31
Navigating the kidney organoid: insights into assessment and enhancement of nephron function. Tabibzadeh, Nahid; Satlin, Lisa M; Jain, Sanjay; Morizane, Ryuji American journal of physiology. Renal physiology 37767571 2023 Dec 01
Quantitative Detection of Thyroid-Stimulating Hormone in Patient Samples with a Nanomechanical Single-Antibody Spectro-Immunoassay. Zheng, Peng; Raj, Piyush; Wu, Lintong; Mizutani, Takayuki; Szabo, Miklos; Hanson, William A; Barman, Ishan Small (Weinheim an der Bergstrasse, Germany) 37752776 2023 Sep 26
Large-scale capture of hidden fluorescent labels for training generalizable markerless motion capture models. Butler, Daniel J; Keim, Alexander P; Ray, Shantanu; Azim, Eiman Nature communications 37752123 2023 Sep 26
Negative and ambisense RNA virus ribonucleocapsids: more than protective armor. Sabsay, Kimberly R; Te Velthuis, Aartjan J W Microbiology and molecular biology reviews : MMBR 37750733 2023 Dec 20
Dissecting key regulators of transcriptome kinetics through scalable single-cell RNA profiling of pooled CRISPR screens. Xu, Zihan; Sziraki, Andras; Lee, Jasper; Zhou, Wei; Cao, Junyue Nature biotechnology 37749268 2023 Sep 25
Click editing enables programmable genome writing using DNA polymerases and HUH endonucleases. da Silva, Joana Ferreira; Tou, Connor J; King, Emily M; Eller, Madeline L; Ma, Linyuan; Rufino-Ramos, David; Kleinstiver, Benjamin P bioRxiv : the preprint server for biology 37745481 2023 Sep 13
Reentrant DNA shells tune polyphosphate condensate size. Chawla, Ravi; Tom, Jenna K A; Boyd, Tumara; Grotjahn, Danielle A; Park, Donghyun; Deniz, Ashok A; Racki, Lisa R bioRxiv : the preprint server for biology 37745474 2023 Sep 15
Reversions mask the contribution of adaptive evolution in microbiomes. Torrillo, Paul A; Lieberman, Tami D bioRxiv : the preprint server for biology 37745437 2023 Sep 17
Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox. Schertzer, Megan D; Stirn, Andrew; Isaev, Keren; Pereira, Laura; Das, Anjali; Harbison, Claire; Park, Stella H; Wessels, Hans-Hermann; Sanjana, Neville E; Knowles, David A bioRxiv : the preprint server for biology 37745416 2023 Sep 13
An explainable language model for antibody specificity prediction using curated influenza hemagglutinin antibodies. Wang, Yiquan; Lv, Huibin; Lei, Ruipeng; Yeung, Yuen-Hei; Shen, Ivana R; Choi, Danbi; Teo, Qi Wen; Tan, Timothy J C; Gopal, Akshita B; Chen, Xin; Graham, Claire S; Wu, Nicholas C bioRxiv : the preprint server for biology 37745338 2023 Sep 14
Joint cortical registration of geometry and function using semi-supervised learning. Li, Jian; Tuckute, Greta; Fedorenko, Evelina; Edlow, Brian L; Fischl, Bruce; Dalca, Adrian V ArXiv 37744470 2023 Oct 16
Expressive dynamics models with nonlinear injective readouts enable reliable recovery of latent features from neural activity. Versteeg, Christopher; Sedler, Andrew R; McCart, Jonathan D; Pandarinath, Chethan ArXiv 37744459 2023 Sep 12
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development. Ramalingam, Vivekanandan; Yu, Xinyang; Slaughter, Brian D; Unruh, Jay R; Brennan, Kaelan J; Onyshchenko, Anastasiia; Lange, Jeffrey J; Natarajan, Malini; Buck, Michael; Zeitlinger, Julia Nature communications 37735176 2023 Sep 21
ActuAtor, a Listeria-inspired molecular tool for physical manipulation of intracellular organizations through de novo actin polymerization. Nakamura, Hideki; Rho, Elmer; Lee, Christopher T; Itoh, Kie; Deng, Daqi; Watanabe, Satoshi; Razavi, Shiva; Matsubayashi, Hideaki T; Zhu, Cuncheng; Jung, Eleanor; Rangamani, Padmini; Watanabe, Shigeki; Inoue, Takanari Cell reports 37734382 2023 Oct 31
A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids. Sockell, Alexandra; Wong, Wing; Longwell, Scott; Vu, Thy; Karlsson, Kasper; Mokhtari, Daniel; Schaepe, Julia; Lo, Yuan-Hung; Cornelius, Vincent; Kuo, Calvin; Van Valen, David; Curtis, Christina; Fordyce, Polly M Cell systems 37734323 2023 Sep 20
Toward Personalized Treatment of Depression: An Affordable Citalopram Test based on a Solid-Contact Potentiometric Electrode for at-Home Monitoring of the Antidepressant Dosage. Chen, Ruitong; Amirghasemi, Farbod; Ma, Haozheng; Ong, Victor; Tran, Ava; Mousavi, Maral P S ACS sensors 37734027 2023 Oct 27
Inhibitory feedback from the motor circuit gates mechanosensory processing in Caenorhabditis elegans. Kumar, Sandeep; Sharma, Anuj K; Tran, Andrew; Liu, Mochi; Leifer, Andrew M PLoS biology 37733772 2023 Sep
MatchMaps: Non-isomorphous difference maps for X-ray crystallography. Brookner, Dennis E; Hekstra, Doeke R bioRxiv : the preprint server for biology 37732267 2023 Sep 04
Pathogenic mitochondrial DNA mutations inhibit melanoma metastasis. Shelton, Spencer D; House, Sara; Ramesh, Vijayashree; Chen, Zhenkang; Wei, Tao; Wang, Xun; Llamas, Claire B; Venigalla, Siva Sai Krishna; Menezes, Cameron J; Zhao, Zhiyu; Gill, Jennifer G; DeBerardinis, Ralph J; Morrison, Sean J; Tasdogan, Alpaslan; Mishra, Prashant bioRxiv : the preprint server for biology 37732192 2023 Sep 05
Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning. Laubscher, Emily; Wang, Xuefei Julie; Razin, Nitzan; Dougherty, Tom; Xu, Rosalind J; Ombelets, Lincoln; Pao, Edward; Graf, William; Moffitt, Jeffrey R; Yue, Yisong; Valen, David Van bioRxiv : the preprint server for biology 37732188 2023 Sep 08
Acetyl-methyllysine marks chromatin at active transcription start sites. Lu-Culligan, William J; Connor, Leah J; Xie, Yixuan; Ekundayo, Babatunde E; Rose, Brendan T; Machyna, Martin; Pintado-Urbanc, Andreas P; Zimmer, Joshua T; Vock, Isaac W; Bhanu, Natarajan V; King, Megan C; Garcia, Benjamin A; Bleichert, Franziska; Simon, Matthew D Nature 37731000 2023 Oct
Wireless agents for brain recording and stimulation modalities. Bok, Ilhan; Vareberg, Adam; Gokhale, Yash; Bhatt, Suyash; Masterson, Emily; Phillips, Jack; Zhu, Tianxiang; Ren, Xiaoxuan; Hai, Aviad Bioelectronic medicine 37726851 2023 Sep 20
PD-1 instructs a tumor-suppressive metabolic program that restricts glycolysis and restrains AP-1 activity in T cell lymphoma. Wartewig, Tim; Daniels, Jay; Schulz, Miriam; Hameister, Erik; Joshi, Abhinav; Park, Joonhee; Morrish, Emma; Venkatasubramani, Anuroop V; Cernilogar, Filippo M; van Heijster, Frits H A; Hundshammer, Christian; Schneider, Heike; Konstantinidis, Filippos; Gabler, Judith V; Klement, Christine; Kurniawan, Henry; Law, Calvin; Lee, Yujin; Choi, Sara; Guitart, Joan; Forne, Ignasi; Giustinani, Jérôme; Müschen, Markus; Jain, Salvia; Weinstock, David M; Rad, Roland; Ortonne, Nicolas; Schilling, Franz; Schotta, Gunnar; Imhof, Axel; Brenner, Dirk; Choi, Jaehyuk; Ruland, Jürgen Nature cancer 37723306 2023 Oct
Acetate acts as a metabolic immunomodulator by bolstering T-cell effector function and potentiating antitumor immunity in breast cancer. Miller, Katelyn D; O'Connor, Seamus; Pniewski, Katherine A; Kannan, Toshitha; Acosta, Reyes; Mirji, Gauri; Papp, Sara; Hulse, Michael; Mukha, Dzmitry; Hlavaty, Sabina I; Salcido, Kelsey N; Bertolazzi, Fabrizio; Srikanth, Yellamelli V V; Zhao, Steven; Wellen, Kathryn E; Shinde, Rahul S; Claiborne, Daniel T; Kossenkov, Andrew; Salvino, Joseph M; Schug, Zachary T Nature cancer 37723305 2023 Oct
Whole-genome screens reveal regulators of differentiation state and context-dependent migration in human neutrophils. Belliveau, Nathan M; Footer, Matthew J; Akdoǧan, Emel; van Loon, Aaron P; Collins, Sean R; Theriot, Julie A Nature communications 37723145 2023 Sep 18
Multiplexed Assessment of Promiscuous Non-Canonical Amino Acid Synthase Activity in a Pyridoxal Phosphate-Dependent Protein Family. Zmich, Anna; Perkins, Lydia J; Bingman, Craig; Acheson, Justin F; Buller, Andrew R ACS catalysis 37720819 2023 Sep 01
Clinician Testing and Treatment Thresholds for Management of Urinary Tract Infection. Harris, Andrea; Pineles, Lisa; Baghdadiv, Jonathan D; Magder, Larry; Dhaliwal, Gurpreet; Korenstein, Deborah; Harris, Anthony D; Morgan, Daniel J Open forum infectious diseases 37720701 2023 Sep
Modeling Gut Neuro-Epithelial Connections in a Novel Micro uidic Device. De Hoyos, Manolo; Yu, Xi; Gonzalez-Suarez, Alan; Mercado-Perez, Arnaldo; Krueger, Eugene; Hernandez, Jeric; Druliner, Brooke; Linden, David R; Beyder, Arthur; Chen, Sisi; Fedyshyn, Yaroslav; Revzin, Alexander Research square 37720014 2023 Sep 07
Steroid hormone signaling: What we can learn from insect models. Okamoto, Naoki; Fujinaga, Daiki; Yamanaka, Naoki Vitamins and hormones 37717997 2023
A Smart Intracellular Self-Assembling Bioorthogonal Raman Active Nanoprobe for Targeted Tumor Imaging. Tanwar, Swati; Ghaemi, Behnaz; Raj, Piyush; Singh, Aruna; Wu, Lintong; Yuan, Yue; Arifin, Dian R; McMahon, Michael T; Bulte, Jeff W M; Barman, Ishan Advanced science (Weinheim, Baden-Wurttemberg, Germany) 37715297 2023 Dec
Progressive Excitability Changes in the Medial Entorhinal Cortex in the 3xTg Mouse Model of Alzheimer's Disease Pathology. Chen, Lingxuan; Christenson Wick, Zoé; Vetere, Lauren M; Vaughan, Nick; Jurkowski, Albert; Galas, Angelina; Diego, Keziah S; Philipsberg, Paul A; Soler, Ivan; Feng, Yu; Cai, Denise J; Shuman, Tristan The Journal of neuroscience : the official journal of the Society for Neuroscience 37714705 2023 Nov 01
Crystal ribcage: a platform for probing real-time lung function at cellular resolution. Banerji, Rohin; Grifno, Gabrielle N; Shi, Linzheng; Smolen, Dylan; LeBourdais, Rob; Muhvich, Johnathan; Eberman, Cate; Hiller, Bradley E; Lee, Jisu; Regan, Kathryn; Zheng, Siyi; Zhang, Sue; Jiang, John; Raslan, Ahmed A; Breda, Julia C; Pihl, Riley; Traber, Katrina; Mazzilli, Sarah; Ligresti, Giovanni; Mizgerd, Joseph P; Suki, Béla; Nia, Hadi T Nature methods 37710017 2023 Nov
Community-Level Risk Factors for Firearm Assault and Homicide: The Role of Local Firearm Dealers and Alcohol Outlets. Pear, Veronica A; Wintemute, Garen J; Jewell, Nicholas P; Cerdá, Magdalena; Ahern, Jennifer Epidemiology (Cambridge, Mass.) 37708491 2023 Nov 01
Human OPRM1 and murine Oprm1 promoter driven viral constructs for genetic access to μ-opioidergic cell types. Salimando, Gregory J; Tremblay, Sébastien; Kimmey, Blake A; Li, Jia; Rogers, Sophie A; Wojick, Jessica A; McCall, Nora M; Wooldridge, Lisa M; Rodrigues, Amrith; Borner, Tito; Gardiner, Kristin L; Jayakar, Selwyn S; Singeç, Ilyas; Woolf, Clifford J; Hayes, Matthew R; De Jonghe, Bart C; Bennett, F Christian; Bennett, Mariko L; Blendy, Julie A; Platt, Michael L; Creasy, Kate Townsend; Renthal, William R; Ramakrishnan, Charu; Deisseroth, Karl; Corder, Gregory Nature communications 37704594 2023 Sep 13
Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features. Bond, Marielle L; Davis, Eric S; Quiroga, Ivana Y; Dey, Anubha; Kiran, Manjari; Love, Michael I; Won, Hyejung; Phanstiel, Douglas H Genome research 37699658 2023 Aug
Nucleosome density shapes kilobase-scale regulation by a mammalian chromatin remodeler. Abdulhay, Nour J; Hsieh, Laura J; McNally, Colin P; Ostrowski, Megan S; Moore, Camille M; Ketavarapu, Mythili; Kasinathan, Sivakanthan; Nanda, Arjun S; Wu, Ke; Chio, Un Seng; Zhou, Ziling; Goodarzi, Hani; Narlikar, Geeta J; Ramani, Vijay Nature structural & molecular biology 37696956 2023 Oct
Antimicrobial mitochondrial reactive oxygen species induction by lung epithelial immunometabolic modulation. Wang, Yongxing; Kulkarni, Vikram V; Pantaleón García, Jezreel; Leiva-Juárez, Miguel M; Goldblatt, David L; Gulraiz, Fahad; Vila Ellis, Lisandra; Chen, Jichao; Longmire, Michael K; Donepudi, Sri Ramya; Lorenzi, Philip L; Wang, Hao; Wong, Lee-Jun; Tuvim, Michael J; Evans, Scott E PLoS pathogens 37695784 2023 Sep
Unravelling human hematopoietic progenitor cell diversity through association with intrinsic regulatory factors. Favaro, Patricia; Glass, David R; Borges, Luciene; Baskar, Reema; Reynolds, Warren; Ho, Daniel; Bruce, Trevor; Tebaykin, Dmitry; Scanlon, Vanessa M; Shestopalov, Ilya; Bendall, Sean C bioRxiv : the preprint server for biology 37693547 2023 Aug 30
Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor. Aspacio, Derek; Zhang, Yulai; Cui, Youtian; King, Edward; Black, William B; Perea, Sean; Luu, Emma; Siegel, Justin B; Li, Han bioRxiv : the preprint server for biology 37693387 2023 Aug 30
18S rRNA methyltransferases DIMT1 and BUD23 drive intergenerational hormesis. Liberman, Noa; Rothi, M Hafiz; Gerashchenko, Maxim V; Zorbas, Christiane; Boulias, Konstantinos; MacWhinnie, Fiona G; Ying, Albert Kejun; Flood Taylor, Anya; Al Haddad, Joseph; Shibuya, Hiroki; Roach, Lara; Dong, Anna; Dellacona, Scarlett; Lafontaine, Denis L J; Gladyshev, Vadim N; Greer, Eric Lieberman Molecular cell 37689068 2023 Sep 21
Optimized expression and purification of a human adenosine deaminase in E. coli and characterization of its Asp8Asn variant. Jennings, Maria Rain; Min, Soohyon; Xu, Grace S; Homayuni, Kassandra; Suresh, Bhavana; Haikal, Yusef Amir; Blazeck, John Protein expression and purification 37683902 2024 Jan
Hormonal gatekeeping via the blood-brain barrier governs caste-specific behavior in ants. Ju, Linyang; Glastad, Karl M; Sheng, Lihong; Gospocic, Janko; Kingwell, Callum J; Davidson, Shawn M; Kocher, Sarah D; Bonasio, Roberto; Berger, Shelley L Cell 37683635 2023 Sep 28
Developmental emergence of sleep rhythms enables long-term memory in Drosophila. Poe, Amy R; Zhu, Lucy; Szuperak, Milan; McClanahan, Patrick D; Anafi, Ron C; Scholl, Benjamin; Thum, Andreas S; Cavanaugh, Daniel J; Kayser, Matthew S Science advances 37683005 2023 Sep 08
A Comprehensive Large Signal, Small Signal, and Noise Model for IGZO Thin Film Transistor Circuits. Vatsyayan, Ritwik; Dayeh, Shadi A IEEE transactions on electron devices 37680851 2023 Sep
Trophoblast organoids with physiological polarity model placental structure and function. Yang, Liheng; Liang, Pengfei; Yang, Huanghe; Coyne, Carolyn B Journal of cell science 37676312 2024 Mar 01
A cell wall synthase accelerates plasma membrane partitioning in mycobacteria. Kado, Takehiro; Akbary, Zarina; Motooka, Daisuke; Sparks, Ian L; Melzer, Emily S; Nakamura, Shota; Rojas, Enrique R; Morita, Yasu S; Siegrist, M Sloan eLife 37665120 2023 Sep 04
Postural analysis reveals persistent changes in paper wasp foundress behavioral state after conspecific challenge. Legan, Andrew W; Vogt, Caleb C; Sheehan, Michael J Ecology and evolution 37664514 2023 Sep
A parametrized two-domain thermodynamic model explains diverse mutational effects on protein allostery. Liu, Zhuang; Gillis, Thomas; Raman, Srivatsan; Cui, Qiang bioRxiv : the preprint server for biology 37662419 2023 Aug 26
Intersectin and Endophilin condensates prime synaptic vesicles for release site replenishment. Ogunmowo, Tyler; Hoffmann, Christian; Pepper, Renee; Wang, Han; Gowrisankaran, Sindhuja; Ho, Annie; Raychaudhuri, Sumana; Cooper, Benjamin H; Milosevic, Ira; Milovanovic, Dragomir; Watanabe, Shigeki bioRxiv : the preprint server for biology 37662300 2023 Aug 23
Age and obesity-driven changes in the extracellular matrix of the primary tumor and metastatic site influence tumor invasion and metastatic outgrowth. Conner, Sydney J; Guarin, Justinne R; Borges, Hannah B; Salhany Jr, Kenneth J; Mensah, Diamond N; Hamilton, Grace A; Le, Giang H; Oudin, Madeleine J bioRxiv : the preprint server for biology 37662270 2023 Aug 25
Single Cell Transcriptome of Stress Vulnerability Network in mouse Prefrontal Cortex. Hing, Benjamin; Mitchell, Sara B; Eberle, Maureen; Filali, Yassine; Hultman, Ian; Matkovich, Molly; Kasturirangan, Mukundan; Wyche, Whitney; Jimenez, Alli; Velamuri, Radha; Johnson, Micah; Srivastava, Sanvesh; Hultman, Rainbo bioRxiv : the preprint server for biology 37662266 2023 Aug 21
A Biotin Targeting Chimera (BioTAC) System to Map Small Molecule Interactomes in situ. Tao, Andrew J; Jiang, Jiewei; Gadbois, Gillian E; Goyal, Pavitra; Boyle, Bridget T; Mumby, Elizabeth J; Myers, Samuel A; English, Justin G; Ferguson, Fleur M bioRxiv : the preprint server for biology 37662262 2023 Aug 22
Integrated high-confidence and high-throughput approaches for quantifying synapse engulfment by oligodendrocyte precursor cells. Kahng, Jessica A; Xavier, Andre M; Ferro, Austin; Auguste, Yohan S S; Cheadle, Lucas bioRxiv : the preprint server for biology 37662250 2023 Aug 25
The virus-induced cyclic dinucleotide 2'3'-c-di-GMP mediates STING-dependent antiviral immunity in Drosophila. Cai, Hua; Li, Lihua; Slavik, Kailey M; Huang, Jingxian; Yin, Ting; Ai, Xianlong; Hédelin, Léna; Haas, Gabrielle; Xiang, Zhangmin; Yang, Yunyun; Li, Xiaoyan; Chen, Yuqiang; Wei, Ziming; Deng, Huimin; Chen, Di; Jiao, Renjie; Martins, Nelson; Meignin, Carine; Kranzusch, Philip J; Imler, Jean-Luc Immunity 37659413 2023 Sep 12
MicroMagnify: A Multiplexed Expansion Microscopy Method for Pathogens and Infected Tissues. Cheng, Zhangyu; Stefani, Caroline; Skillman, Thomas; Klimas, Aleksandra; Lee, Aramchan; DiBernardo, Emma F; Brown, Karina Mueller; Milman, Tatyana; Wang, Yuhong; Gallagher, Brendan R; Lagree, Katherine; Jena, Bhanu P; Pulido, Jose S; Filler, Scott G; Mitchell, Aaron P; Hiller, N Luisa; Lacy-Hulbert, Adam; Zhao, Yongxin Advanced science (Weinheim, Baden-Wurttemberg, Germany) 37658522 2023 Oct
Regulation of gene editing using T-DNA concatenation. Dickinson, Lauren; Yuan, Wenxin; LeBlanc, Chantal; Thomson, Geoffrey; Wang, Siyuan; Jacob, Yannick Nature plants 37653336 2023 Sep
iPSC motor neurons, but not other derived cell types, capture gene expression changes in postmortem sporadic ALS motor neurons. Held, Aaron; Adler, Michelle; Marques, Christine; Reyes, Charles Jourdan; Kavuturu, Amey S; Quadros, Ana R A A; Ndayambaje, I Sandra; Lara, Erika; Ward, Michael; Lagier-Tourenne, Clotilde; Wainger, Brian J Cell reports 37651231 2023 Sep 26
Decoding the obesity-cancer connection: lessons from preclinical models of pancreatic adenocarcinoma. Ruiz, Christian F; Garcia, Cathy; Jacox, Jeremy B; Lawres, Lauren; Muzumdar, Mandar D Life science alliance 37648285 2023 Nov
Strain-Inducing Positional Alkene Isomerization. Palani, Vignesh; Wendlandt, Alison E Journal of the American Chemical Society 37647593 2023 Sep 13
Fluorosulfate as a Latent Sulfate in Peptides and Proteins. Liu, Chao; Liu, Xueyi; Zhou, Mi; Xia, Chaoshuang; Lyu, Yuhan; Peng, Qianni; Soni, Chintan; Zhou, Zefeng; Su, Qiwen; Wu, Yujia; Weerapana, Eranthie; Gao, Jianmin; Chatterjee, Abhishek; Lin, Cheng; Niu, Jia Journal of the American Chemical Society 37647087 2023 Sep 20
ICAM-1-decorated extracellular vesicles loaded with miR-146a and Glut1 drive immunomodulation and hinder tumor progression in a murine model of breast cancer. Duarte-Sanmiguel, Silvia; Salazar-Puerta, Ana I; Panic, Ana; Dodd, Daniel; Francis, Carlie; Alzate-Correa, Diego; Ortega-Pineda, Lilibeth; Lemmerman, Luke; Rincon-Benavides, Maria A; Dathathreya, Kavya; Lawrence, William; Ott, Neil; Zhang, Jingjing; Deng, Binbin; Wang, Shipeng; Santander, Sandra P; McComb, David W; Reategui, Eduardo; Palmer, Andre F; Carson, William E; Higuita-Castro, Natalia; Gallego-Perez, Daniel Biomaterials science 37646133 2023 Oct 10
Flexible regulation of representations on a drifting manifold enables long-term stable complex neuroprosthetic control. Natraj, Nikhilesh; Seko, Sarah; Abiri, Reza; Yan, Hongyi; Graham, Yasmin; Tu-Chan, Adelyn; Chang, Edward F; Ganguly, Karunesh bioRxiv : the preprint server for biology 37645922 2023 Aug 14
Cell arrangement impacts metabolic activity and antibiotic tolerance in Pseudomonas aeruginosa biofilms. Dayton, Hannah; Kiss, Julie; Wei, Mian; Chauhan, Shradha; LaMarre, Emily; Cornell, William Cole; Morgan, Chase J; Janakiraman, Anuradha; Min, Wei; Tomer, Raju; Price-Whelan, Alexa; Nirody, Jasmine A; Dietrich, Lars E P bioRxiv : the preprint server for biology 37645902 2023 Aug 28
Ventromedial prefrontal parvalbumin neurons are necessary for initiating cued threat avoidance. Ho, Yi-Yun; Yang, Qiuwei; Boddu, Priyanka; Bulkin, David A; Warden, Melissa R bioRxiv : the preprint server for biology 37645876 2023 Aug 18
Endothelial TMEM16F lipid scramblase regulates angiogenesis. Shan, Ke Zoe; Le, Trieu; Liang, Pengfei; Dong, Ping; Yang, Huanghe bioRxiv : the preprint server for biology 37645870 2023 Aug 20
Serotonin neurons in mating female mice are activated by male ejaculation. Troconis, Eileen L; Seo, Changwoo; Guru, Akash; Warden, Melissa R bioRxiv : the preprint server for biology 37645786 2023 Aug 19
Programmable multi-kilobase RNA editing using CRISPR-mediated trans-splicing. Borrajo, Jacob; Javanmardi, Kamyab; Griffin, James; St Martin, Susan J; Yao, David; Hill, Kaisle; Blainey, Paul C; Al-Shayeb, Basem bioRxiv : the preprint server for biology 37645763 2023 Aug 18
DISSECTING TUMOR TRANSCRIPTIONAL HETEROGENEITY FROM SINGLE-CELL RNA-SEQ DATA BY GENERALIZED BINARY COVARIANCE DECOMPOSITION. Liu, Yusha; Carbonetto, Peter; Willwerscheid, Jason; Oakes, Scott A; Macleod, Kay F; Stephens, Matthew bioRxiv : the preprint server for biology 37645713 2023 Aug 17
Rapid model-guided design of organ-scale synthetic vasculature for biomanufacturing. Sexton, Zachary A; Hudson, Andrew R; Herrmann, Jessica E; Shiwarski, Dan J; Pham, Jonathan; Szafron, Jason M; Wu, Sean M; Skylar-Scott, Mark; Feinberg, Adam W; Marsden, Alison ArXiv 37645046 2023 Aug 15
Joint single-cell profiling resolves 5mC and 5hmC and reveals their distinct gene regulatory effects. Fabyanic, Emily B; Hu, Peng; Qiu, Qi; Berríos, Kiara N; Connolly, Daniel R; Wang, Tong; Flournoy, Jennifer; Zhou, Zhaolan; Kohli, Rahul M; Wu, Hao Nature biotechnology 37640946 2023 Aug 28
Fluorogenic chemically induced dimerization. Wang, Wenjing; Shen, Jiaqi Nature methods 37640937 2023 Oct
In Vivo, High-Throughput Selection of Thermostable Cyclohexanone Monooxygenase (CHMO). Maxel, Sarah; Zhang, Linyue; King, Edward; Acosta, Ana Paula; Luo, Ray; Li, Han Catalysts (Basel, Switzerland) 37637965 2020 Aug
A Fluorescent Unnatural Mannosamine Derivative with Enhanced Emission Upon Complexation with Cucurbit[7]uril. Kataki-Anastasakou, Anna; Jia, Shang; Axtell, Jonathan C; Sletten, Ellen M Israel journal of chemistry 37636996 2023 Feb
A Review of Current State-of-the-Art Control Methods for Lower-Limb Powered Prostheses. Gehlhar, Rachel; Tucker, Maegan; Young, Aaron J; Ames, Aaron D Annual reviews in control 37635763 2023
A comparative analysis of microglial inducible Cre lines. Faust, Travis E; Feinberg, Philip A; O'Connor, Ciara; Kawaguchi, Riki; Chan, Andrew; Strasburger, Hayley; Frosch, Maximilian; Boyle, Margaret A; Masuda, Takahiro; Amann, Lukas; Knobeloch, Klaus-Peter; Prinz, Marco; Schaefer, Anne; Schafer, Dorothy P Cell reports 37635351 2023 Sep 26
The evolving landscape of immune-related adverse events that follow immune checkpoint immunotherapy in cancer patients. Villani, Alexandra-Chloé Immunological reviews 37632320 2023 Sep
Tuning Hsp104 specificity to selectively detoxify α-synuclein. Mack, Korrie L; Kim, Hanna; Barbieri, Edward M; Lin, JiaBei; Braganza, Sylvanne; Jackrel, Meredith E; DeNizio, Jamie E; Yan, Xiaohui; Chuang, Edward; Tariq, Amber; Cupo, Ryan R; Castellano, Laura M; Caldwell, Kim A; Caldwell, Guy A; Shorter, James Molecular cell 37625404 2023 Sep 21
Engineered Biocatalytic Synthesis of β-N-Substituted-α-Amino Acids. Villalona, Jairo; Higgins, Peyton M; Buller, Andrew R Angewandte Chemie (International ed. in English) 37625129 2023 Oct 23
Germline-encoded specificities and the predictability of the B cell response. Vieira, Marcos C; Palm, Anna-Karin E; Stamper, Christopher T; Tepora, Micah E; Nguyen, Khoa D; Pham, Tho D; Boyd, Scott D; Wilson, Patrick C; Cobey, Sarah PLoS pathogens 37624867 2023 Aug
Engineering Embden-Meyerhof-Parnas Glycolysis to Generate Noncanonical Reducing Power. King, Edward; Cui, Youtian; Aspacio, Derek; Nicklen, Frances; Zhang, Linyue; Maxel, Sarah; Luo, Ray; Siegel, Justin B; Aitchison, Erick; Li, Han ACS catalysis 37622090 2022 Jul 15
A FLEXIBLE BAYESIAN FRAMEWORK TO ESTIMATE AGE- AND CAUSE-SPECIFIC CHILD MORTALITY OVER TIME FROM SAMPLE REGISTRATION DATA. Schumacher, Austin E; McCormick, Tyler H; Wakefield, Jon; Chu, Yue; Perin, Jamie; Villavicencio, Francisco; Simon, Noah; Liu, Li The annals of applied statistics 37621750 2022 Mar
Chronotate: An open-source tool for manual timestamping and quantification of animal behavior. Philipsberg, Paul A; Christenson Wick, Zoé; Diego, Keziah S; Vaughan, Nick; Galas, Angelina; Jurkowski, Albert; Feng, Yu; Vetere, Lauren M; Chen, Lingxuan; Soler, Iván; Cai, Denise J; Shuman, Tristan Neuroscience letters 37619698 2023 Sep 25
What is a minimal clinically important difference for clinical trials in patients with disorders of consciousness? a novel probabilistic approach. Monti, Martin M; Spivak, Norman M; Edlow, Brian L; Bodien, Yelena G PloS one 37616196 2023
Predictors of Cognitive Change in Parkinson Disease: A 2-year Follow-up Study. Gasca-Salas, Carmen; Duff-Canning, Sarah; McArthur, Eric; Armstrong, Melissa J; Fox, Susan; Meaney, Christopher A; Tang-Wai, David F; Gill, David; Eslinger, Paul J; Zadikoff, Cindy; Marshall, Fred J; Mapstone, Mark; Chou, Kelvin L; Persad, Carol; Litvan, Irene; Mast, Benjamin T; Gerstenecker, Adam T; Weintraub, Sandra; Marras, Connie Alzheimer disease and associated disorders 37615480 2023 Oct-Dec 01
Towards the Visual Proteomics of C. reinhardtii using High-throughput Collaborative in situ Cryo-ET. Khavnekar, Sagar; Kelley, Ron; Waltz, Florent; Wietrzynski, Wojciech; Zhang, Xianjun; Obr, Martin; Tagiltsev, Grigory; Beck, Florian; Wan, William; Briggs, John; Engel, Ben; Plitzko, Juergen; Kotecha, Abhay Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada 37613825 2023 Jul 22
Studying the Molecular Mechanisms of Ebola Virus with in situ Structural Biology. Wan, William Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada 37613814 2023 Jul 22
Elucidating the Mechanism of Phosphatidylserine Exposure During Ebola Virus Assembly. Huth, Tyler; Wan, William Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada 37613461 2023 Jul 22
TOMOMAN: Streamlining Cryo-electron Tomography and Subtomogram Averaging Workflows Using TOMOgram MANager. Khavnekar, Sagar; Erdmann, Philipp; Wan, William Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada 37613381 2023 Jul 22
Cell-type-specific plasticity shapes neocortical dynamics for motor learning. Majumder, Shouvik; Hirokawa, Koichi; Yang, Zidan; Paletzki, Ronald; Gerfen, Charles R; Fontolan, Lorenzo; Romani, Sandro; Jain, Anant; Yasuda, Ryohei; Inagaki, Hidehiko K bioRxiv : the preprint server for biology 37609277 2023 Aug 14
A genome-wide atlas of human cell morphology. Ramezani, Meraj; Bauman, Julia; Singh, Avtar; Weisbart, Erin; Yong, John; Lozada, Maria; Way, Gregory P; Kavari, Sanam L; Diaz, Celeste; Haghighi, Marzieh; Batista, Thiago M; Pérez-Schindler, Joaquín; Claussnitzer, Melina; Singh, Shantanu; Cimini, Beth A; Blainey, Paul C; Carpenter, Anne E; Jan, Calvin H; Neal, James T bioRxiv : the preprint server for biology 37609130 2023 Aug 07
Base Editor Scanning Reveals Activating Mutations of DNMT3A. Garcia, Emma M; Lue, Nicholas Z; Liang, Jessica K; Lieberman, Whitney K; Hwang, Derek D; Woods, James C; Liau, Brian B ACS chemical biology 37603861 2023 Sep 15
Immune-infiltrated kidney organoid-on-chip model for assessing T cell bispecific antibodies. Kroll, Katharina T; Mata, Mariana M; Homan, Kimberly A; Micallef, Virginie; Carpy, Alejandro; Hiratsuka, Ken; Morizane, Ryuji; Moisan, Annie; Gubler, Marcel; Walz, Antje-Christine; Marrer-Berger, Estelle; Lewis, Jennifer A Proceedings of the National Academy of Sciences of the United States of America 37603766 2023 Aug 29
A Protease-Responsive Polymer/Peptide Conjugate and Reversible Assembly of Silver Clusters for the Detection of Porphyromonas gingivalis Enzymatic Activity. Retout, Maurice; Amer, Lubna; Yim, Wonjun; Creyer, Matthew N; Lam, Benjamin; Trujillo, Diego F; Potempa, Jan; O'Donoghue, Anthony J; Chen, Casey; Jokerst, Jesse V ACS nano 37602819 2023 Sep 12
Ionizable Lipid Nanoparticles with Integrated Immune Checkpoint Inhibition for mRNA CAR T Cell Engineering. Hamilton, Alex G; Swingle, Kelsey L; Joseph, Ryann A; Mai, David; Gong, Ningqiang; Billingsley, Margaret M; Alameh, Mohamad-Gabriel; Weissman, Drew; Sheppard, Neil C; June, Carl H; Mitchell, Michael J Advanced healthcare materials 37602495 2023 Dec
Schizophrenia-associated somatic copy-number variants from 12,834 cases reveal recurrent NRXN1 and ABCB11 disruptions. Maury, Eduardo A; Sherman, Maxwell A; Genovese, Giulio; Gilgenast, Thomas G; Kamath, Tushar; Burris, S J; Rajarajan, Prashanth; Flaherty, Erin; Akbarian, Schahram; Chess, Andrew; McCarroll, Steven A; Loh, Po-Ru; Phillips-Cremins, Jennifer E; Brennand, Kristen J; Macosko, Evan Z; Walters, James T R; O'Donovan, Michael; Sullivan, Patrick; Psychiatric Genomic Consortium Schizophrenia and CNV workgroup; Brain Somatic Mosaicism Network; Sebat, Jonathan; Lee, Eunjung A; Walsh, Christopher A Cell genomics 37601975 2023 Aug 09
Multiscale computational modeling of the effects of 2'-deoxy-ATP on cardiac muscle calcium handling. Hock, Marcus T; Teitgen, Abigail E; McCabe, Kimberly J; Hirakis, Sophia P; Huber, Gary A; Regnier, Michael; Amaro, Rommie E; McCammon, J Andrew; McCulloch, Andrew D Journal of applied physics 37601331 2023 Aug 21
Modeling X-chromosome inactivation and reactivation during human development. Khan, Shafqat A; Theunissen, Thorold W Current opinion in genetics & development 37597506 2023 Oct
RaMALDI: Enabling simultaneous Raman and MALDI imaging of the same tissue section. Yang, Ethan; Kim, Jeong Hee; Tressler, Caitlin M; Shen, Xinyi Elaine; Brown, Dalton R; Johnson, Cole C; Hahm, Tae-Hun; Barman, Ishan; Glunde, Kristine Biosensors & bioelectronics 37597501 2023 Nov 01
FAM120A couples SREBP-dependent transcription and splicing of lipogenesis enzymes downstream of mTORC1. Cho, Sungyun; Chun, Yujin; He, Long; Ramirez, Cuauhtemoc B; Ganesh, Kripa S; Jeong, Kyungjo; Song, Junho; Cheong, Jin Gyu; Li, Zhongchi; Choi, Jungmin; Kim, Joohwan; Koundouros, Nikos; Ding, Fangyuan; Dephoure, Noah; Jang, Cholsoon; Blenis, John; Lee, Gina Molecular cell 37595559 2023 Aug 17
Genetic dissection of crossover mutants defines discrete intermediates in mouse meiosis. Premkumar, Tolkappiyan; Paniker, Lakshmi; Kang, Rhea; Biot, Mathilde; Humphrey, Ericka; Destain, Honorine; Ferranti, Isabella; Okulate, Iyinyeoluwa; Nguyen, Holly; Kilaru, Vindhya; Frasca, Melissa; Chakraborty, Parijat; Cole, Francesca Molecular cell 37595556 2023 Aug 17
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1. Abini-Agbomson, Stephen; Gretarsson, Kristjan; Shih, Rochelle M; Hsieh, Laura; Lou, Tracy; De Ioannes, Pablo; Vasilyev, Nikita; Lee, Rachel; Wang, Miao; Simon, Matthew D; Armache, Jean-Paul; Nudler, Evgeny; Narlikar, Geeta; Liu, Shixin; Lu, Chao; Armache, Karim-Jean Molecular cell 37595555 2023 Aug 17
Estimating the Efficiency Gain of Covariate-Adjusted Analyses in Future Clinical Trials Using External Data. Li, Xiudi; Li, Sijia; Luedtke, Alex Journal of the Royal Statistical Society. Series B, Statistical methodology 37593690 2023 Apr
Neurofibromin 1 regulates early developmental sleep in Drosophila. Durkin, Jaclyn; Poe, Amy R; Belfer, Samuel J; Rodriguez, Anyara; Tang, Si Hao; Walker, James A; Kayser, Matthew S Neurobiology of sleep and circadian rhythms 37593040 2023 Nov
Xiphoid nucleus of the midline thalamus controls cold-induced food seeking. Lal, Neeraj K; Le, Phuong; Aggarwal, Samarth; Zhang, Alan; Wang, Kristina; Qi, Tianbo; Pang, Zhengyuan; Yang, Dong; Nudell, Victoria; Yeo, Gene W; Banks, Alexander S; Ye, Li Nature 37587337 2023 Sep
Models for human telomere C-strand fill-in by CST-Polα-primase. He, Qixiang; Lim, Ci Ji Trends in biochemical sciences 37586999 2023 Oct
Dynamically Cross-Linked Granular Hydrogels for 3D Printing and Therapeutic Delivery. Lee, Hung-Pang; Davis Jr, Ryan; Wang, Ting-Ching; Deo, Kaivalya A; Cai, Kathy Xiao; Alge, Daniel L; Lele, Tanmay P; Gaharwar, Akhilesh K ACS applied bio materials 37584641 2023 Sep 18
Mutations in human DNA methyltransferase DNMT1 induce specific genome-wide epigenomic and transcriptomic changes in neurodevelopment. Davis, Kasey N; Qu, Ping-Ping; Ma, Shining; Lin, Ling; Plastini, Melanie; Dahl, Niklas; Plazzi, Giuseppe; Pizza, Fabio; O'Hara, Ruth; Wong, Wing Hung; Hallmayer, Joachim; Mignot, Emmanuel; Zhang, Xianglong; Urban, Alexander E Human molecular genetics 37584462 2023 Oct 17
Correcting systematic errors in diffraction data with modern scaling algorithms. Aldama, Luis A; Dalton, Kevin M; Hekstra, Doeke R Acta crystallographica. Section D, Structural biology 37584427 2023 Sep 01
Cross-attractor modeling of resting-state functional connectivity in psychiatric disorders. Sun, Yinming; Zhang, Mengsen; Saggar, Manish NeuroImage 37579998 2023 Oct 01
Focused ultrasound-mediated brain genome editing. Lao, Yeh-Hsing; Ji, Robin; Zhou, Joyce K; Snow, Kathy J; Kwon, Nancy; Saville, Ethan; He, Siyu; Chauhan, Shradha; Chi, Chun-Wei; Datta, Malika S; Zhang, Hairong; Quek, Chai Hoon; Cai, S Sarah; Li, Mingqiang; Gaitan, Yaned; Bechtel, Lawrence; Wu, Shih-Ying; Lutz, Cathleen M; Tomer, Raju; Murray, Stephen A; Chavez, Alejandro; Konofagou, Elisa E; Leong, Kam W Proceedings of the National Academy of Sciences of the United States of America 37579143 2023 Aug 22
Niclosamide potentiates TMEM16A and induces vasoconstriction. Liang, Pengfei; Wan, Yui Chun S; Yu, Kuai; Hartzell, H Criss; Yang, Huanghe bioRxiv : the preprint server for biology 37577682 2023 Aug 02
Sensitization of meningeal afferents to locomotion-related meningeal deformations in a migraine model. Blaeser, Andrew S; Zhao, Jun; Sugden, Arthur U; Carneiro-Nascimento, Simone; Andermann, Mark L; Levy, Dan bioRxiv : the preprint server for biology 37577675 2023 Nov 28
A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data. Zuffa, Simone; Schmid, Robin; Bauermeister, Anelize; Gomes, Paulo Wender P; Caraballo-Rodriguez, Andres M; Abiead, Yasin El; Aron, Allegra T; Gentry, Emily C; Zemlin, Jasmine; Meehan, Michael J; Avalon, Nicole E; Cichewicz, Robert H; Buzun, Ekaterina; Terrazas, Marvic Carrillo; Hsu, Chia-Yun; Oles, Renee; Ayala, Adriana Vasquez; Zhao, Jiaqi; Chu, Hiutung; Kuijpers, Mirte C M; Jackrel, Sara L; Tugizimana, Fidele; Nephali, Lerato Pertunia; Dubery, Ian A; Madala, Ntakadzeni Edwin; Moreira, Eduarda Antunes; Costa-Lotufo, Leticia Veras; Lopes, Norberto Peporine; Rezende-Teixeira, Paula; Jimenez, Paula C; Rimal, Bipin; Patterson, Andrew D; Traxler, Matthew F; de Cassia Pessotti, Rita; Alvarado-Villalobos, Daniel; Tamayo-Castillo, Giselle; Chaverri, Priscila; Escudero-Leyva, Efrain; Quiros-Guerrero, Luis-Manuel; Bory, Alexandre Jean; Joubert, Juliette; Rutz, Adriano; Wolfender, Jean-Luc; Allard, Pierre-Marie; Sichert, Andreas; Pontrelli, Sammy; Pullman, Benjamin S; Bandeira, Nuno; Gerwick, William H; Gindro, Katia; Massana-Codina, Josep; Wagner, Berenike C; Forchhammer, Karl; Petras, Daniel; Aiosa, Nicole; Garg, Neha; Liebeke, Manuel; Bourceau, Patric; Kang, Kyo Bin; Gadhavi, Henna; de Carvalho, Luiz Pedro Sorio; Dos Santos, Mariana Silva; Pérez-Lorente, Alicia Isabel; Molina-Santiago, Carlos; Romero, Diego; Franke, Raimo; Brönstrup, Mark; de León, Arturo Vera Ponce; Pope, Phillip Byron; Rosa, Sabina Leanti La; Barbera, Giorgia La; Roager, Henrik M; Laursen, Martin Frederik; Hammerle, Fabian; Siewert, Bianka; Peintner, Ursula; Licona-Cassani, Cuauhtemoc; Rodriguez-Orduña, Lorena; Rampler, Evelyn; Hildebrand, Felina; Koellensperger, Gunda; Schoeny, Harald; Hohenwallner, Katharina; Panzenboeck, Lisa; Gregor, Rachel; O'Neill, Ellis Charles; Roxborough, Eve Tallulah; Odoi, Jane; Bale, Nicole J; Ding, Su; Sinninghe Damsté, Jaap S; Guan, Xueli Li; Cui, Jerry J; Ju, Kou-San; Silva, Denise Brentan; Silva, Fernanda Motta Ribeiro; da Silva, Gilvan Ferreira; Koolen, Hector H F; Grundmann, Carlismari; Clement, Jason A; Mohimani, Hosein; Broders, Kirk; McPhail, Kerry L; Ober-Singleton, Sidnee E; Rath, Christopher M; McDonald, Daniel; Knight, Rob; Wang, Mingxun; Dorrestein, Pieter C Research square 37577622 2023 Aug 03
TWISP: A Transgenic Worm for Interrogating Signal Propagation in C. elegans. Sharma, Anuj Kumar; Randi, Francesco; Kumar, Sandeep; Dvali, Sophie; Leifer, Andrew M bioRxiv : the preprint server for biology 37577580 2023 Aug 05
Heterogeneity and Functional Analysis of Cardiac Fibroblasts in Heart Development. Deng, Yiting; He, Yuanhang; Xu, Juan; He, Haoting; Li, Guang bioRxiv : the preprint server for biology 37577541 2023 Jul 31
Engineered Vasculogenic Extracellular Vesicles Drive Nonviral Direct Conversions of Human Dermal Fibroblasts into Induced Endothelial Cells and Improve Wound Closure. Rincon-Benavides, Maria A; Mendonca, Natalia Claire; Cuellar-Gaviria, Tatiana Z; Salazar-Puerta, Ana I; Ortega-Pineda, Lilibeth; Blackstone, Britani N; Deng, Binbin; McComb, David W; Gallego-Perez, Daniel; Powell, Heather M; Higuita-Castro, Natalia Advanced therapeutics 37577183 2023 Mar
Causal isotonic calibration for heterogeneous treatment effects. van der Laan, Lars; Ulloa-Pérez, Ernesto; Carone, Marco; Luedtke, Alex Proceedings of machine learning research 37575467 2023 Jul
Dynamics of SLC25A51 reveal preference for oxidized NAD+ and substrate led transport. Goyal, Shivansh; Paspureddi, Akhilesh; Lu, Mu-Jie; Chan, Hsin-Ru; Lyons, Scott N; Wilson, Crystal N; Niere, Marc; Ziegler, Mathias; Cambronne, Xiaolu A EMBO reports 37575034 2023 Oct 09
Bacterial amylases enable glycogen degradation by the vaginal microbiome. Jenkins, Dominick J; Woolston, Benjamin M; Hood-Pishchany, M Indriati; Pelayo, Paula; Konopaski, Alyssa N; Quinn Peters, M; France, Michael T; Ravel, Jacques; Mitchell, Caroline M; Rakoff-Nahoum, Seth; Whidbey, Christopher; Balskus, Emily P Nature microbiology 37563289 2023 Sep
Brain mitochondrial diversity and network organization predict anxiety-like behavior in male mice. Rosenberg, Ayelet M; Saggar, Manish; Monzel, Anna S; Devine, Jack; Rogu, Peter; Limoges, Aaron; Junker, Alex; Sandi, Carmen; Mosharov, Eugene V; Dumitriu, Dani; Anacker, Christoph; Picard, Martin Nature communications 37563104 2023 Aug 10
Bioadhesive polymer semiconductors and transistors for intimate biointerfaces. Li, Nan; Li, Yang; Cheng, Zhe; Liu, Youdi; Dai, Yahao; Kang, Seounghun; Li, Songsong; Shan, Naisong; Wai, Shinya; Ziaja, Aidan; Wang, Yunfei; Strzalka, Joseph; Liu, Wei; Zhang, Cheng; Gu, Xiaodan; Hubbell, Jeffrey A; Tian, Bozhi; Wang, Sihong Science (New York, N.Y.) 37561870 2023 Aug 11
Chemoproteomics Reveals Disruption of Metal Homeostasis and Metalloproteins by the Antibiotic Holomycin. Chan, Andrew N; Chen, Xiaoyan; Falco, Julia A; Bak, Daniel W; Weerapana, Eranthie; Li, Bo ACS chemical biology 37561838 2023 Sep 15
Technological advances in probing 4D genome organization. Soroczynski, Jan; Risca, Viviana I Current opinion in cell biology 37556867 2023 Oct
Throughput-scalable manufacturing of SARS-CoV-2 mRNA lipid nanoparticle vaccines. Shepherd, Sarah J; Han, Xuexiang; Mukalel, Alvin J; El-Mayta, Rakan; Thatte, Ajay S; Wu, Jingyu; Padilla, Marshall S; Alameh, Mohamad-Gabriel; Srikumar, Neha; Lee, Daeyeon; Weissman, Drew; Issadore, David; Mitchell, Michael J Proceedings of the National Academy of Sciences of the United States of America 37556502 2023 Aug 15
Topography of inputs into the hippocampal formation of a food-caching bird. Applegate, Marissa C; Gutnichenko, Konstantin S; Aronov, Dmitriy The Journal of comparative neurology 37553864 2023 Nov
G-quadruplexes associated with R-loops promote CTCF binding. Wulfridge, Phillip; Yan, Qingqing; Rell, Nathaniel; Doherty, John; Jacobson, Skye; Offley, Sarah; Deliard, Sandra; Feng, Kelly; Phillips-Cremins, Jennifer E; Gardini, Alessandro; Sarma, Kavitha Molecular cell 37552993 2023 Sep 07
Persistent cell contacts enable E-cadherin/HMR-1- and PAR-3-based symmetry breaking within a developing C. elegans epithelium. Naturale, Victor F; Pickett, Melissa A; Feldman, Jessica L Developmental cell 37552986 2023 Oct 09
An oncolytic virus-delivered TGFβ inhibitor overcomes the immunosuppressive tumor microenvironment. DePeaux, Kristin; Rivadeneira, Dayana B; Lontos, Konstantinos; Dean, Victoria G; Gunn, William G; Watson, McLane J; Yao, Tianhong; Wilfahrt, Drew; Hinck, Cynthia; Wieteska, Lukasz; Thorne, Stephen H; Hinck, Andrew P; Delgoffe, Greg M The Journal of experimental medicine 37552475 2023 Oct 02
Click display: a rapid and efficient in vitro protein display method for directed evolution. Zeng, Yu; Woolley, Michael; Chockalingam, Karuppiah; Thomas, Benjamin; Arora, Srishtee; Hook, Magnus; Chen, Zhilei Nucleic acids research 37548398 2023 Sep 08
PMS1 as a target for splice modulation to prevent somatic CAG repeat expansion in Huntington's disease. McLean, Zachariah L; Gao, Dadi; Correia, Kevin; Roy, Jennie C L; Shibata, Shota; Farnum, Iris N; Valdepenas-Mellor, Zoe; Rapuru, Manasa; Morini, Elisabetta; Ruliera, Jayla; Gillis, Tammy; Lucente, Diane; Kleinstiver, Benjamin P; Lee, Jong-Min; MacDonald, Marcy E; Wheeler, Vanessa C; Pinto, Ricardo Mouro; Gusella, James F bioRxiv : the preprint server for biology 37547003 2023 Jul 27
Competition between stochastic neuropeptide signals calibrates the rate of satiation. Zhang, Stephen X; Kim, Angela; Madara, Joseph C; Zhu, Paula K; Christenson, Lauren F; Lutas, Andrew; Kalugin, Peter N; Jin, Yihan; Pal, Akash; Tian, Lin; Lowell, Bradford B; Andermann, Mark L Research square 37546985 2023 Jul 26
Bacterial cGAS-like enzymes produce 2',3'-cGAMP to activate an ion channel that restricts phage replication. Tak, Uday; Walth, Peace; Whiteley, Aaron T bioRxiv : the preprint server for biology 37546940 2023 Jul 24
A genome-wide single-cell 3D genome atlas of lung cancer progression. Liu, Miao; Jin, Shengyan; Agabiti, Sherry S; Jensen, Tyler B; Yang, Tianqi; Radda, Jonathan S D; Ruiz, Christian F; Baldissera, Gabriel; Muzumdar, Mandar Deepak; Wang, Siyuan bioRxiv : the preprint server for biology 37546882 2023 Jul 24
Autophagy collaborates with apoptosis pathways to control oligodendrocyte number. Zhang, Tingxin; Bhambri, Aksheev; Zhang, Yihe; Barbosa, Daniela; Bae, Han-Gyu; Xue, Jumin; Wazir, Sabeen; Mulinyawe, Sara B; Kim, Jun Hee; Sun, Lu O Cell reports 37543947 2023 Aug 29
PRC1 suppresses a female gene regulatory network to ensure testicular differentiation. Maezawa, So; Yukawa, Masashi; Hasegawa, Kazuteru; Sugiyama, Ryo; Iizuka, Mizuho; Hu, Mengwen; Sakashita, Akihiko; Vidal, Miguel; Koseki, Haruhiko; Barski, Artem; DeFalco, Tony; Namekawa, Satoshi H Cell death & disease 37542070 2023 Aug 04
DRG afferents that mediate physiologic and pathologic mechanosensation from the distal colon. Wolfson, Rachel L; Abdelaziz, Amira; Rankin, Genelle; Kushner, Sarah; Qi, Lijun; Mazor, Ofer; Choi, Seungwon; Sharma, Nikhil; Ginty, David D Cell 37541195 2023 Aug 03
Female naïve human pluripotent stem cells carry X chromosomes with Xa-like and Xi-like folding conformations. Patterson, Benjamin; Yang, Bing; Tanaka, Yoshiaki; Kim, Kun-Yong; Cakir, Bilal; Xiang, Yangfei; Kim, Jonghun; Wang, Siyuan; Park, In-Hyun Science advances 37540754 2023 Aug 04
WNTinib is a multi-kinase inhibitor with specificity against β-catenin mutant hepatocellular carcinoma. Rialdi, Alex; Duffy, Mary; Scopton, Alex P; Fonseca, Frank; Zhao, Julia Nanyi; Schwarz, Megan; Molina-Sanchez, Pedro; Mzoughi, Slim; Arceci, Elisa; Abril-Fornaguera, Jordi; Meadows, Austin; Ruiz de Galarreta, Marina; Torre, Denis; Reyes, Kyna; Lim, Yan Ting; Rosemann, Felix; Khan, Zaigham M; Mohammed, Kevin; Wang, Xuedi; Yu, Xufen; Lakshmanan, Manikandan; Rajarethinam, Ravisankar; Tan, Soo Yong; Jin, Jian; Villanueva, Augusto; Michailidis, Eleftherios; De Jong, Ype P; Rice, Charles M; Marazzi, Ivan; Hasson, Dan; Llovet, Josep M; Sobota, Radoslaw M; Lujambio, Amaia; Guccione, Ernesto; Dar, Arvin C Nature cancer 37537299 2023 Aug
High-throughput bioprinting of the nasal epithelium using patient-derived nasal epithelial cells. Deniz Derman, I; Yeo, Miji; Castaneda, Diana Cadena; Callender, Megan; Horvath, Mian; Mo, Zengshuo; Xiong, Ruoyun; Fleming, Elizabeth; Chen, Phylip; Peeples, Mark E; Palucka, Karolina; Oh, Julia; Ozbolat, Ibrahim T Biofabrication 37536321 2023 Aug 14
A multiplexed bacterial two-hybrid for rapid characterization of protein-protein interactions and iterative protein design. Boldridge, W Clifford; Ljubetič, Ajasja; Kim, Hwangbeom; Lubock, Nathan; Szilágyi, Dániel; Lee, Jonathan; Brodnik, Andrej; Jerala, Roman; Kosuri, Sriram Nature communications 37532706 2023 Aug 02
Repeat polymorphisms underlie top genetic risk loci for glaucoma and colorectal cancer. Mukamel, Ronen E; Handsaker, Robert E; Sherman, Maxwell A; Barton, Alison R; Hujoel, Margaux L A; McCarroll, Steven A; Loh, Po-Ru Cell 37527660 2023 Aug 17
Unlocking the secrets of ABEs: the molecular mechanism behind their specificity. Chen, Xiaoyu; McAndrew, Mitchell J; Lapinaite, Audrone Biochemical Society transactions 37526140 2023 Aug 31
High-performance neural population dynamics modeling enabled by scalable computational infrastructure. Patel, Aashish N; Sedler, Andrew R; Huang, Jingya; Pandarinath, Chethan; Gilja, Vikash Journal of open source software 37520691 2023
Rational engineering of an improved adenosine deaminase 2 enzyme for weaponizing T-cell therapies. Cox, J R; Jennings, M; Lenahan, C; Manion, M; Courville, S; Blazeck, J Immuno-oncology technology 37519414 2023 Sep
A High-Throughput Colocalization Pipeline for Quantification of Mitochondrial Targeting across Different Protein Types. Lear, Sierra K; Nunez, Jose A; Shipman, Seth L ACS synthetic biology 37506292 2023 Aug 18
Cell-type-specific disruption of cortico-striatal circuitry drives repetitive patterns of behavior in fragile X syndrome model mice. Longo, Francesco; Aryal, Sameer; Anastasiades, Paul G; Maltese, Marta; Baimel, Corey; Albanese, Federica; Tabor, Joanna; Zhu, Jeffrey D; Oliveira, Mauricio M; Gastaldo, Denise; Bagni, Claudia; Santini, Emanuela; Tritsch, Nicolas X; Carter, Adam G; Klann, Eric Cell reports 37505982 2023 Aug 29
The Brain Electroencephalogram Microdisplay for Precision Neurosurgery. Tchoe, Youngbin; Wu, Tianhai; U, Hoi Sang; Roth, David M; Kim, Dongwoo; Lee, Jihwan; Cleary, Daniel R; Pizarro, Patricia; Tonsfeldt, Karen J; Lee, Keundong; Chen, Po Chun; Bourhis, Andrew M; Galton, Ian; Coughlin, Brian; Yang, Jimmy C; Paulk, Angelique C; Halgren, Eric; Cash, Sydney S; Dayeh, Shadi A bioRxiv : the preprint server for biology 37503216 2023 Jul 21
Mechanism of target site selection by type V-K CRISPR-associated transposases. George, Jerrin Thomas; Acree, Christopher; Park, Jung-Un; Kong, Muwen; Wiegand, Tanner; Pignot, Yanis Luca; Kellogg, Elizabeth H; Greene, Eric C; Sternberg, Samuel H bioRxiv : the preprint server for biology 37503092 2023 Jul 14
Multidimensional super-resolution microscopy unveils nanoscale surface aggregates in the aging of FUS condensates. He, Changdong; Wu, Chun Ying; Li, Wan; Xu, Ke bioRxiv : the preprint server for biology 37503034 2023 Jul 12
Simultaneous multi-site editing of individual genomes using retron arrays. González-Delgado, Alejandro; Lopez, Santiago C; Rojas-Montero, Matías; Fishman, Chloe B; Shipman, Seth L bioRxiv : the preprint server for biology 37503029 2023 Jul 17
Sustaining wakefulness: Brainstem connectivity in human consciousness. Edlow, Brian L; Olchanyi, Mark; Freeman, Holly J; Li, Jian; Maffei, Chiara; Snider, Samuel B; Zöllei, Lilla; Iglesias, J Eugenio; Augustinack, Jean; Bodien, Yelena G; Haynes, Robin L; Greve, Douglas N; Diamond, Bram R; Stevens, Allison; Giacino, Joseph T; Destrieux, Christophe; van der Kouwe, Andre; Brown, Emery N; Folkerth, Rebecca D; Fischl, Bruce; Kinney, Hannah C bioRxiv : the preprint server for biology 37502983 2023 Jul 15
LEF1 isoforms regulate cellular senescence and aging. Jia, Minxue; Sayed, Khaled; Kapetanaki, Maria G; Dion, William; Rosas, Lorena; Irfan, Saad; Valenzi, Eleanor; Mora, Ana L; Lafyatis, Robert A; Rojas, Mauricio; Zhu, Bokai; Benos, Panayiotis V bioRxiv : the preprint server for biology 37502913 2023 Jul 21
PyLabRobot: An Open-Source, Hardware Agnostic Interface for Liquid-Handling Robots and Accessories. Wierenga, Rick P; Golas, Stefan; Ho, Wilson; Coley, Connor; Esvelt, Kevin M bioRxiv : the preprint server for biology 37502883 2023 Jul 15
A cortical information bottleneck during decision-making. Kleinman, Michael; Wang, Tian; Xiao, Derek; Feghhi, Ebrahim; Lee, Kenji; Carr, Nicole; Li, Yuke; Hadidi, Nima; Chandrasekaran, Chandramouli; Kao, Jonathan C bioRxiv : the preprint server for biology 37502862 2023 Jul 14
CTLA-4 tail fusion enhances CAR-T antitumor immunity. Zhou, Xiaoyu; Cao, Hanbing; Fang, Shao-Yu; Chow, Ryan D; Tang, Kaiyuan; Majety, Medha; Bai, Meizhu; Dong, Matthew B; Renauer, Paul A; Shang, Xingbo; Suzuki, Kazushi; Levchenko, Andre; Chen, Sidi Nature immunology 37500885 2023 Sep
The intensities of canonical senescence biomarkers integrate the duration of cell-cycle withdrawal. Ashraf, Humza M; Fernandez, Brianna; Spencer, Sabrina L Nature communications 37500655 2023 Jul 27
Genetic modification of inflammation- and clonal hematopoiesis-associated cardiovascular risk. Yu, Zhi; Fidler, Trevor P; Ruan, Yunfeng; Vlasschaert, Caitlyn; Nakao, Tetsushi; Uddin, Md Mesbah; Mack, Taralynn; Niroula, Abhishek; Heimlich, J Brett; Zekavat, Seyedeh M; Gibson, Christopher J; Griffin, Gabriel K; Wang, Yuxuan; Peloso, Gina M; Heard-Cos The Journal of clinical investigation 37498674 2023 Sep 15
Breaking enhancers to gain insights into developmental defects. Armendariz, Daniel A; Sundarrajan, Anjana; Hon, Gary C eLife 37497775 2023 Jul 27
Rapid genetic screening with high quality factor metasurfaces. Hu, Jack; Safir, Fareeha; Chang, Kai; Dagli, Sahil; Balch, Halleh B; Abendroth, John M; Dixon, Jefferson; Moradifar, Parivash; Dolia, Varun; Sahoo, Malaya K; Pinsky, Benjamin A; Jeffrey, Stefanie S; Lawrence, Mark; Dionne, Jennifer A Nature communications 37495593 2023 Jul 26
Achieving tissue-level softness on stretchable electronics through a generalizable soft interlayer design. Li, Yang; Li, Nan; Liu, Wei; Prominski, Aleksander; Kang, Seounghun; Dai, Yahao; Liu, Youdi; Hu, Huawei; Wai, Shinya; Dai, Shilei; Cheng, Zhe; Su, Qi; Cheng, Ping; Wei, Chen; Jin, Lihua; Hubbell, Jeffrey A; Tian, Bozhi; Wang, Sihong Nature communications 37495580 2023 Jul 26
Toward the clinical development of synthetic immunity to cancer. Garcia, Julie M; Burnett, Cassandra E; Roybal, Kole T Immunological reviews 37491719 2023 Nov
Continuous odor profile monitoring to study olfactory navigation in small animals. Chen, Kevin S; Wu, Rui; Gershow, Marc H; Leifer, Andrew M eLife 37489570 2023 Jul 25
N6-adenosine methylation controls the translation of insulin mRNA. Wilinski, Daniel; Dus, Monica Nature structural & molecular biology 37488356 2023 Sep
Feasibility and Validity of the Coma Recovery Scale-Revised for Accelerated Standardized Testing: A Practical Assessment Tool for Detecting Consciousness in the Intensive Care Unit. Bodien, Yelena G; Vora, Isha; Barra, Alice; Chiang, Kevin; Chatelle, Camille; Goostrey, Kelsey; Martens, Geraldine; Malone, Christopher; Mello, Jennifer; Parlman, Kristin; Ranford, Jessica; Sterling, Ally; Waters, Abigail B; Hirschberg, Ronald; Katz, Douglas I; Mazwi, Nicole; Ni, Pengsheng; Velmahos, George; Waak, Karen; Edlow, Brian L; Giacino, Joseph T Annals of neurology 37488068 2023 Nov
Mechanical transmission of dengue virus by Aedes aegypti may influence disease transmission dynamics during outbreaks. Li, Hsing-Han; Su, Matthew P; Wu, Shih-Cheng; Tsou, Hsiao-Hui; Chang, Meng-Chun; Cheng, Yu-Chieh; Tsai, Kuen-Nan; Wang, Hsin-Wei; Chen, Guan-Hua; Tang, Cheng-Kang; Chung, Pei-Jung; Tsai, Wan-Ting; Huang, Li-Rung; Yueh, Yueh Andrew; Chen, Hsin-Wei; Pan, Chao-Ying; Akbari, Omar S; Chang, Hsiao-Han; Yu, Guann-Yi; Marshall, John M; Chen, Chun-Hong EBioMedicine 37487418 2023 Aug
Prediction of risk for myeloid malignancy in clonal hematopoiesis. Weeks, Lachelle D; Niroula, Abhishek; Neuberg, Donna; Wong, Waihay; Lindsley, R Coleman; Luskin, Marlise; Berliner, Nancy; Stone, Richard M; DeAngelo, Daniel J; Soiffer, Robert; Uddin, Md Mesbah; Griffin, Gabriel; Vlasschaert, Caitlyn; Gibson, Christopher J; Jaiswal, Siddhartha; Bick, Alexander G; Malcovati, Luca; Natarajan, Pradeep; Ebert, Benjamin L NEJM evidence 37483562 2023 May
Microtubule nucleation for spindle assembly: one molecule at a time. Kraus, Jodi; Alfaro-Aco, Raymundo; Gouveia, Bernardo; Petry, Sabine Trends in biochemical sciences 37482516 2023 Sep
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Localization of the Drosophila pioneer factor GAF to subnuclear foci is driven by DNA binding and required to silence satellite repeat expression. Gaskill, Marissa M; Soluri, Isabella V; Branks, Annemarie E; Boka, Alan P; Stadler, Michael R; Vietor, Katherine; Huang, Hao-Yu S; Gibson, Tyler J; Mukherjee, Apratim; Mir, Mustafa; Blythe, Shelby A; Harrison, Melissa M Developmental cell 37478844 2023 Sep 11
Fine scale human mobility changes within 26 US cities in 2020 in response to the COVID-19 pandemic were associated with distance and income. Arambepola, Rohan; Schaber, Kathryn L; Schluth, Catherine; Huang, Angkana T; Labrique, Alain B; Mehta, Shruti H; Solomon, Sunil S; Cummings, Derek A T; Wesolowski, Amy PLOS global public health 37478056 2023
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Gradient-mixing LEGO robots for purifying DNA origami nanostructures of multiple components by rate-zonal centrifugation. Sentosa, Jason; Djutanta, Franky; Horne, Brian; Showkeir, Dominic; Rezvani, Robert; Leff, Chloe; Pradhan, Swechchha; Hariadi, Rizal F PloS one 37467178 2023
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Sperm chromatin structure and reproductive fitness are altered by substitution of a single amino acid in mouse protamine 1. Moritz, Lindsay; Schon, Samantha B; Rabbani, Mashiat; Sheng, Yi; Agrawal, Ritvija; Glass-Klaiber, Juniper; Sultan, Caleb; Camarillo, Jeannie M; Clements, Jourdan; Baldwin, Michael R; Diehl, Adam G; Boyle, Alan P; O'Brien, Patrick J; Ragunathan, Kaushik; Hu, Yueh-Chiang; Kelleher, Neil L; Nandakumar, Jayakrishnan; Li, Jun Z; Orwig, Kyle E; Redding, Sy; Hammoud, Saher Sue Nature structural & molecular biology 37460896 2023 Aug
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The Yin and Yang of Breast Cancer: Ion Channels as Determinants of Left-Right Functional Differences. Masuelli, Sofía; Real, Sebastián; McMillen, Patrick; Oudin, Madeleine; Levin, Michael; Roqué, María International journal of molecular sciences 37446299 2023 Jul 05
Co-Targeting FASN and mTOR Suppresses Uveal Melanoma Growth. Han, Anna; Mukha, Dzmitry; Chua, Vivian; Purwin, Timothy J; Tiago, Manoela; Modasia, Bhavik; Baqai, Usman; Aumiller, Jenna L; Bechtel, Nelisa; Hunter, Emily; Danielson, Meggie; Terai, Mizue; Wedegaertner, Philip B; Sato, Takami; Landreville, Solange; Davies, Michael A; Kurtenbach, Stefan; Harbour, J William; Schug, Zachary T; Aplin, Andrew E Cancers 37444561 2023 Jun 30
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Bubble-pen lithography: Fundamentals and applications: Nanoscience: Special Issue Dedicated to Professor Paul S. Weiss. Kollipara, Pavana Siddhartha; Mahendra, Ritvik; Li, Jingang; Zheng, Yuebing Aggregate (Hoboken, N.J.) 37441005 2022 Aug
A Bayesian nonparametric analysis for zero-inflated multivariate count data with application to microbiome study. Shuler, Kurtis; Verbanic, Samuel; Chen, Irene A; Lee, Juhee Journal of the Royal Statistical Society. Series C, Applied statistics 37440868 2021 Aug
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Scaling biological discovery at the interface of deep learning and cellular imaging. Schwartz, Morgan; Israel, Uriah; Wang, Xuefei Julie; Laubscher, Emily; Yu, Changhua; Dilip, Rohit; Li, Qilin; Mari, Joud; Soro, Johnathon; Yu, Kevin; Pradhan, Elora; Ates, Ada; Gallandt, Danielle; Barnowski, Ross; Pao, Edward; Van Valen, David Nature methods 37434003 2023 Jul
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Targeted Nanocarriers Co-Opting Pulmonary Intravascular Leukocytes for Drug Delivery to the Injured Brain. Nong, Jia; Glassman, Patrick M; Myerson, Jacob W; Zuluaga-Ramirez, Viviana; Rodriguez-Garcia, Alba; Mukalel, Alvin; Omo-Lamai, Serena; Walsh, Landis R; Zamora, Marco E; Gong, Xijing; Wang, Zhicheng; Bhamidipati, Kartik; Kiseleva, Raisa Y; Villa, Carlos H; Greineder, Colin Fred; Kasner, Scott E; Weissman, Drew; Mitchell, Michael J; Muro, Silvia; Persidsky, Yuri; Brenner, Jacob Samuel; Muzykantov, Vladimir R; Marcos-Contreras, Oscar A ACS nano 37432926 2023 Jul 25
Using a Video Game Intervention to Increase Hospitalists' Advance Care Planning Conversations with Older Adults: a Stepped Wedge Randomized Clinical Trial. Mohan, Deepika; O'Malley, A James; Chelen, Julia; MacMartin, Meredith; Murphy, Megan; Rudolph, Mark; Engel, Jaclyn A; Barnato, Amber E Journal of general internal medicine 37429972 2023 Nov
Regular rhythmic primes improve sentence repetition in children with developmental language disorder. Fiveash, Anna; Ladányi, Enikő; Camici, Julie; Chidiac, Karen; Bush, Catherine T; Canette, Laure-Hélène; Bedoin, Nathalie; Gordon, Reyna L; Tillmann, Barbara NPJ science of learning 37429839 2023 Jul 10
Synthesizing a Smarter CAR T Cell: Advanced Engineering of T-cell Immunotherapies. Zhu, Iowis; Piraner, Dan I; Roybal, Kole T Cancer immunology research 37429007 2023 Aug 03
Cyclin E/CDK2 and feedback from soluble histone protein regulate the S phase burst of histone biosynthesis. Armstrong, Claire; Passanisi, Victor J; Ashraf, Humza M; Spencer, Sabrina L Cell reports 37428633 2023 Jul 25
Sequence basis of transcription initiation in human genome. Dudnyk, Kseniia; Shi, Chenlai; Zhou, Jian bioRxiv : the preprint server for biology 37425823 2023 Jun 29
Single Cell Multi-Omics of an iPSC Model of Human Sinoatrial Node Development Reveals Genetic Determinants of Heart Rate and Arrhythmia Susceptibility. Engel, James L; Zhang, Xianglong; Lu, Daniel R; Vila, Olaia F; Arias, Vanessa; Lee, Jasper; Hale, Christopher; Hsu, Yi-Hsiang; Li, Chi-Ming; Wu, Roland S; Vedantham, Vasanth; Ang, Yen-Sin bioRxiv : the preprint server for biology 37425707 2023 Sep 02
Integration of metabolism and regulation reveals rapid adaptability to growth on non-native substrates. Trivedi, Vikas D; Sullivan, Sean F; Choudhury, Debika; Endalur Gopinarayanan, Venkatesh; Hart, Taylor; Nair, Nikhil U Cell chemical biology 37421944 2023 Sep 21
Proximity-labeling chemoproteomics defines the subcellular cysteinome and inflammation-responsive mitochondrial redoxome. Yan, Tianyang; Julio, Ashley R; Villanueva, Miranda; Jones, Anthony E; Ball, Andréa B; Boatner, Lisa M; Turmon, Alexandra C; Nguyễn, Kaitlyn B; Yen, Stephanie L; Desai, Heta S; Divakaruni, Ajit S; Backus, Keriann M Cell chemical biology 37419112 2023 Jul 20
Enhancement of Lipid Signals in Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry with Ammonium Fluoride as a Matrix Additive. Holbrook, Joseph H; Sekera, Emily R; Lopez, Arbil; Fries, Brian D; Tobias, Fernando; Akkaya, Kubra; Mihaylova, Maria M; Hummon, Amanda B Analytical chemistry 37418337 2023 Jul 18
Towards universal synthetic heterotrophy using a metabolic coordinator. Sullivan, Sean F; Shetty, Anuj; Bharadwaj, Tharun; Krishna, Naveen; Trivedi, Vikas D; Endalur Gopinarayanan, Venkatesh; Chappell, Todd C; Sellers, Daniel M; Pravin Kumar, R; Nair, Nikhil U Metabolic engineering 37406763 2023 Sep
A confinable female-lethal population suppression system in the malaria vector, Anopheles gambiae. Smidler, Andrea L; Pai, James J; Apte, Reema A; Sánchez C, Héctor M; Corder, Rodrigo M; Jeffrey Gutiérrez, Eileen; Thakre, Neha; Antoshechkin, Igor; Marshall, John M; Akbari, Omar S Science advances 37406109 2023 Jul 07
Genome-wide screen identifies host loci that modulate Mycobacterium tuberculosis fitness in immunodivergent mice. Meade, Rachel K; Long, Jarukit E; Jinich, Adrian; Rhee, Kyu Y; Ashbrook, David G; Williams, Robert W; Sassetti, Christopher M; Smith, Clare M G3 (Bethesda, Md.) 37405387 2023 Aug 30
Variability in Donor Lung Culture and Relative Humidity Impact the Stability of 2009 Pandemic H1N1 Influenza Virus on Nonporous Surfaces. Qian, Zhihong; Morris, Dylan H; Avery, Annika; Kormuth, Karen A; Le Sage, Valerie; Myerburg, Michael M; Lloyd-Smith, James O; Marr, Linsey C; Lakdawala, Seema S Applied and environmental microbiology 37404191 2023 Jul 26
Generation of 3D Trophoblast Organoids from Human Naïve Pluripotent Stem Cells. Karvas, Rowan M; Theunissen, Thorold W Methods in molecular biology (Clifton, N.J.) 37402094 2023 Jul 05
Prediction of on-target and off-target activity of CRISPR-Cas13d guide RNAs using deep learning. Wessels, Hans-Hermann; Stirn, Andrew; Méndez-Mancilla, Alejandro; Kim, Eric J; Hart, Sydney K; Knowles, David A; Sanjana, Neville E Nature biotechnology 37400521 2023 Jul 03
Network effects of Stanford Neuromodulation Therapy (SNT) in treatment-resistant major depressive disorder: a randomized, controlled trial. Batail, Jean-Marie; Xiao, Xiaoqian; Azeez, Azeezat; Tischler, Claudia; Kratter, Ian H; Bishop, James H; Saggar, Manish; Williams, Nolan R Translational psychiatry 37400432 2023 Jul 03
CARD-like domains mediate anti-phage defense in bacterial gasdermin systems. Wein, Tanita; Johnson, Alex G; Millman, Adi; Lange, Katharina; Yirmiya, Erez; Hadary, Romi; Garb, Jeremy; Steinruecke, Felix; Hill, Aidan B; Kranzusch, Philip J; Sorek, Rotem bioRxiv : the preprint server for biology 37398489 2023 May 29
Progressive excitability changes in the medial entorhinal cortex in the 3xTg mouse model of Alzheimer's disease pathology. Chen, Lingxuan; Wick, Zoé Christenson; Vetere, Lauren M; Vaughan, Nick; Jurkowski, Albert; Galas, Angelina; Diego, Keziah S; Philipsberg, Paul; Cai, Denise J; Shuman, Tristan bioRxiv : the preprint server for biology 37398359 2023 May 30
Exploring natural odour landscapes: A case study with implications for human-biting insects. Zung, Jessica L; Kotb, Sumer M; McBride, Carolyn S bioRxiv : the preprint server for biology 37398328 2023 May 30
Cell morphology best predicts tumorigenicity and metastasis in vivo across multiple TNBC cell lines of different metastatic potential. Conner, Sydney; Guarin, Justinne R; Le, Thanh T; Fatherree, Jackson; Kelley, Charlotte; Payne, Samantha; Salhany, Ken; McGinn, Rachel; Henrich, Emily; Yui, Anna; Parker, Savannah; Srinivasan, Deepti; Bloomer, Hanan; Borges, Hannah; Oudin, Madeleine J bioRxiv : the preprint server for biology 37398306 2023 Jun 14
Integrative identification of non-coding regulatory regions driving metastatic prostate cancer. Woo, Brian J; Moussavi-Baygi, Ruhollah; Karner, Heather; Karimzadeh, Mehran; Garcia, Kristle; Joshi, Tanvi; Yin, Keyi; Navickas, Albertas; Gilbert, Luke A; Wang, Bo; Asgharian, Hosseinali; Feng, Felix Y; Goodarzi, Hani bioRxiv : the preprint server for biology 37398273 2023 Jun 02
Evolutionary engineering a larger porin using a loop-to-hairpin mechanism. Dhar, Rik; Bowman, Alexander M; Hatungimana, Brunojoel; Slusky, Joanna Sg bioRxiv : the preprint server for biology 37398247 2023 Sep 20
Resolving conformational changes that mediate a two-step catalytic mechanism in a model enzyme. Greisman, Jack B; Dalton, Kevin M; Brookner, Dennis E; Klureza, Margaret A; Sheehan, Candice J; Kim, In-Sik; Henning, Robert W; Russi, Silvia; Hekstra, Doeke R bioRxiv : the preprint server for biology 37398233 2023 Jun 03
Efficient Sex Separation by Exploiting Differential Alternative Splicing of a Dominant Marker in Aedes aegypti. Weng, Shih-Che; Antoshechkin, Igor; Marois, Eric; Akbari, Omar S bioRxiv : the preprint server for biology 37398094 2023 Jun 16
Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy. McFaline-Figueroa, José L; Srivatsan, Sanjay; Hill, Andrew J; Gasperini, Molly; Jackson, Dana L; Saunders, Lauren; Domcke, Silvia; Regalado, Samuel G; Lazarchuck, Paul; Alvarez, Sarai; Monnat Jr, Raymond J; Shendure, Jay; Trapnell, Cole bioRxiv : the preprint server for biology 37398090 2023 Jun 14
Temporal Mapper: Transition networks in simulated and real neural dynamics. Zhang, Mengsen; Chowdhury, Samir; Saggar, Manish Network neuroscience (Cambridge, Mass.) 37397880 2023
An Atlas of Variant Effects to understand the genome at nucleotide resolution. Fowler, Douglas M; Adams, David J; Gloyn, Anna L; Hahn, William C; Marks, Debora S; Muffley, Lara A; Neal, James T; Roth, Frederick P; Rubin, Alan F; Starita, Lea M; Hurles, Matthew E Genome biology 37394429 2023 Jul 03
When a calorie is not just a calorie: Diet quality and timing as mediators of metabolism and healthy aging. Mihaylova, Maria M; Chaix, Amandine; Delibegovic, Mirela; Ramsey, Jon J; Bass, Joseph; Melkani, Girish; Singh, Rajat; Chen, Zheng; Ja, William W; Shirasu-Hiza, Michele; Latimer, Mary N; Mattison, Julie A; Thalacker-Mercer, Anna E; Dixit, Vishwa Deep; Panda, Satchidananda; Lamming, Dudley W Cell metabolism 37392742 2023 Jun 25
CXCR3 expression in regulatory T cells drives interactions with type I dendritic cells in tumors to restrict CD8+ T cell antitumor immunity. Moreno Ayala, Mariela A; Campbell, Timothy F; Zhang, Chenyu; Dahan, Noa; Bockman, Alissa; Prakash, Varsha; Feng, Lawrence; Sher, Theo; DuPage, Michel Immunity 37392735 2023 Jul 11
Shifting early embryology paradigms: Applications of stem cell-based embryo models in bioengineering. Abel, Ashley; Sozen, Berna Current opinion in genetics & development 37392541 2023 Aug
Base editor screens for in situ mutational scanning at scale. Lue, Nicholas Z; Liau, Brian B Molecular cell 37390819 2023 Jul 06
Infusible Extracellular Matrix Biomaterial Promotes Vascular Integrity and Modulates the Inflammatory Response in Acute Traumatic Brain Injury. Diaz, Miranda D; Kandell, Rebecca M; Wu, Jason R; Chen, Alexander; Christman, Karen L; Kwon, Ester J Advanced healthcare materials 37390094 2023 Oct
Cell-type specificity of the human mutation landscape with respect to DNA replication dynamics. Caballero, Madison; Boos, Dominik; Koren, Amnon Cell genomics 37388911 2023 Jun 14
The landscape of somatic mutations in lymphoblastoid cell lines. Caballero, Madison; Koren, Amnon Cell genomics 37388907 2023 Jun 14
Editorial: Broadening our conceptual understanding of endogenous opioids in systems neuroscience. Tejeda, Hugo A; Massaly, Nicolas; Corder, Gregory; Cahill, Catherine M Frontiers in systems neuroscience 37383356 2023
Spit, Disgust, and Parasite Stress Theory: A Message Experiment. Chavez-Yenter, Daniel; Lille, Helen M; Gorissen, Sebastiaan; John, Kevin K; Vega, Alexis S; Jensen, Jakob D Journal of health communication 37382498 2023 Aug 03
Neural stem cell metabolism revisited: a critical role for mitochondria. Scandella, Valentina; Petrelli, Francesco; Moore, Darcie L; Braun, Simon M G; Knobloch, Marlen Trends in endocrinology and metabolism: TEM 37380501 2023 Aug
cGLRs are a diverse family of pattern recognition receptors in innate immunity. Li, Yao; Slavik, Kailey M; Toyoda, Hunter C; Morehouse, Benjamin R; de Oliveira Mann, Carina C; Elek, Anamaria; Levy, Shani; Wang, Zhenwei; Mears, Kepler S; Liu, Jingjing; Kashin, Dmitry; Guo, Ximing; Mass, Tali; Sebé-Pedrós, Arnau; Schwede, Frank; Kranzusch, Philip J Cell 37379839 2023 Jul 20
Calcium-triggered DNA-mediated membrane fusion in synthetic cells. Hsu, Yen-Yu; Chen, Samuel J; Bernal-Chanchavac, Julio; Sharma, Bineet; Moghimianavval, Hossein; Stephanopoulos, Nicholas; Liu, Allen P Chemical communications (Cambridge, England) 37365952 2023 Jul 13
Adjuvant lipidoid-substituted lipid nanoparticles augment the immunogenicity of SARS-CoV-2 mRNA vaccines. Han, Xuexiang; Alameh, Mohamad-Gabriel; Butowska, Kamila; Knox, James J; Lundgreen, Kendall; Ghattas, Majed; Gong, Ningqiang; Xue, Lulu; Xu, Ying; Lavertu, Marc; Bates, Paul; Xu, Junchao; Nie, Guangjun; Zhong, Yi; Weissman, Drew; Mitchell, Michael J Nature nanotechnology 37365276 2023 Jun 26
Lipid nanoparticle topology regulates endosomal escape and delivery of RNA to the cytoplasm. Zheng, Lining; Bandara, Sarith R; Tan, Zhengzhong; Leal, Cecilia Proceedings of the National Academy of Sciences of the United States of America 37364130 2023 Jul 04
Nrf2 Drives Hepatocellular Carcinoma Progression through Acetyl-CoA-Mediated Metabolic and Epigenetic Regulatory Networks. Xi, Caixia; Pang, Junfeng; Barrett, Amanda; Horuzsko, Anatolij; Ande, Satyanarayana; Mivechi, Nahid F; Zhu, Xingguo Molecular cancer research : MCR 37364049 2023 Oct 02
Sex differences in deleterious genetic variants in a haplodiploid social insect. Miller, Sara E; Sheehan, Michael J Molecular ecology 37350360 2023 Aug
Skin microbiome attributes associate with biophysical skin ageing. Zhou, Wei; Fleming, Elizabeth; Legendre, Guylaine; Roux, Lauriane; Latreille, Julie; Gendronneau, Gaëlle; Forestier, Sandra; Oh, Julia Experimental dermatology 37350224 2023 Sep
Microbiome modulates immunotherapy response in cutaneous squamous cell carcinoma. Voigt, Anita Y; Walter, Andrew; Young, Timothy H; Graham, John P; Batista Bittencourt, Bruna M; de Mingo Pulido, Alvaro; Prieto, Karol; Tsai, Kenneth Y; Sundberg, John P; Oh, Julia Experimental dermatology 37350109 2023 Oct
Multifunctional microelectronic fibers enable wireless modulation of gut and brain neural circuits. Sahasrabudhe, Atharva; Rupprecht, Laura E; Orguc, Sirma; Khudiyev, Tural; Tanaka, Tomo; Sands, Joanna; Zhu, Weikun; Tabet, Anthony; Manthey, Marie; Allen, Harrison; Loke, Gabriel; Antonini, Marc-Joseph; Rosenfeld, Dekel; Park, Jimin; Garwood, Indie C; Yan, Wei; Niroui, Farnaz; Fink, Yoel; Chandrakasan, Anantha; Bohórquez, Diego V; Anikeeva, Polina Nature biotechnology 37349522 2023 Jun 22
Purification and characterization of tomato arginine decarboxylase and its inhibition by the bacterial small molecule phevamine A. Guo, Qiang; Chen, Xiaoyan; Li, Bo Protein expression and purification 37348664 2023 Oct
Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood. Schuermans, Art; Nakao, Tetsushi; Ruan, Yunfeng; Koyama, Satoshi; Yu, Zhi; Uddin, Md Mesbah; Haidermota, Sara; Hornsby, Whitney; Lewandowski, Adam J; Bick, Alexander G; Niroula, Abhishek; Jaiswal, Siddhartha; Ebert, Benjamin L; Natarajan, Pradeep; Honigberg, Michael C Journal of the American Heart Association 37345823 2023 Jul 04
Structural basis of protein condensation on microtubules underlying branching microtubule nucleation. Guo, Changmiao; Alfaro-Aco, Raymundo; Zhang, Chunting; Russell, Ryan W; Petry, Sabine; Polenova, Tatyana Nature communications 37344496 2023 Jun 21
Acentrosomal spindles assemble from branching microtubule nucleation near chromosomes in Xenopus laevis egg extract. Gouveia, Bernardo; Setru, Sagar U; King, Matthew R; Hamlin, Aaron; Stone, Howard A; Shaevitz, Joshua W; Petry, Sabine Nature communications 37344488 2023 Jun 21
Hindbrain modules differentially transform activity of single collicular neurons to coordinate movements. Zahler, Sebastian H; Taylor, David E; Wright, Brennan S; Wong, Joey Y; Shvareva, Varvara A; Park, Yusol A; Feinberg, Evan H Cell 37343561 2023 Jul 06
Comparative landscape of genetic dependencies in human and chimpanzee stem cells. She, Richard; Fair, Tyler; Schaefer, Nathan K; Saunders, Reuben A; Pavlovic, Bryan J; Weissman, Jonathan S; Pollen, Alex A Cell 37343560 2023 Jul 06
Systematic analysis of the molecular and biophysical properties of key DNA damage response factors. Heyza, Joshua R; Mikhova, Mariia; Bahl, Aastha; Broadbent, David G; Schmidt, Jens C eLife 37341699 2023 Jun 21
Progress toward Proteome-Wide Photo-Cross-Linking to Enable Residue-Level Visualization of Protein Structures and Networks In Vivo. Faustino, Anneliese M; Sharma, Piyoosh; Manriquez-Sandoval, Edgar; Yadav, Divya; Fried, Stephen D Analytical chemistry 37341467 2023 Jul 18
Effects of solvent conditions on the self-assembly of heterotrimeric collagen-like peptide (CLP) triple helices: a coarse-grained simulation study. Taylor, Phillip A; Kronenberger, Stephen; Kloxin, April M; Jayaraman, Arthi Soft matter 37340986 2023 Jul 05
A complex of Wnt/planar cell polarity signaling components Vangl1 and Fzd7 drives glioblastoma multiforme malignant properties. Dreyer, Courtney A; VanderVorst, Kacey; Natwick, Dean; Bell, George; Sood, Prachi; Hernandez, Maria; Angelastro, James M; Collins, Sean R; Carraway 3rd, Kermit L Cancer letters 37336284 2023 Jul 28
Opportunities to expand postpartum support for those in recovery from opioid use disorder: Results from a qualitative study. Allen, Alicia; Bueno, Yvonne; Mallahan, Stephanie; MacPherson, Allison Huff; Armin, Julie Drug and alcohol dependence reports 37334156 2023 Jun
Combined GWAS and single cell transcriptomics uncover the underlying genes and cell types in disorders of gut-brain interaction. Majd, Alireza; Richter, Mikayla N; Samuel, Ryan M; Cesiulis, Andrius; Ghazizadeh, Zaniar; Wang, Jeffrey; Fattahi, Faranak medRxiv : the preprint server for health sciences 37333423 2023 Jun 05
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Functional characterization of helminth-associated Clostridiales reveals covariates of Treg differentiation. Sargsian, Shushan; Lejeune, Alannah; Ercelen, Defne; Jin, Wen-Bing; Varghese, Alan; Loke, P'ng; Lim, Yvonne A L; Guo, Chun-Jun; Cadwell, Ken bioRxiv : the preprint server for biology 37333296 2023 Jun 07
ENPP1 is an innate immune checkpoint of the anticancer cGAMP-STING pathway. Wang, Songnan; Böhnert, Volker; Joseph, Alby J; Sudaryo, Valentino; Swinderman, Jason; B Yu, Feiqiao; Lyu, Xuchao; Skariah, Gemini; Subramanyam, Vishvak; Gilbert, Luke A; Goodarzi, Hani; Li, Lingyin bioRxiv : the preprint server for biology 37333273 2023 Jun 05
Hidden protein-altering variants influence diverse human phenotypes. Hujoel, Margaux L A; Handsaker, Robert E; Sherman, Maxwell A; Kamitaki, Nolan; Barton, Alison R; Mukamel, Ronen E; Terao, Chikashi; McCarroll, Steven A; Loh, Po-Ru bioRxiv : the preprint server for biology 37333244 2023 Jun 09
Scalable projected Light Sheet Microscopy for high-resolution imaging of large samples. Chen, Yannan; Gong, Cheng; Chauhan, Shradha; De La Cruz, Estanislao Daniel; Datta, Malika S; Tomer, Raju bioRxiv : the preprint server for biology 37333196 2023 Jun 05
A Spatiotemporal Compartmentalization of Glucose Metabolism Guides Mammalian Gastrulation Progression. Cao, Dominica; Zhong, Liangwen; Hemalatha, Anupama; Bergmann, Jenna; Cox, Andy L; Greco, Valentina; Sozen, Berna bioRxiv : the preprint server for biology 37333168 2023 Jun 08
Beyond antibiotic resistance: the whiB7 transcription factor coordinates an adaptive response to alanine starvation in mycobacteria. Poulton, Nicholas C; DeJesus, Michael A; Munsamy-Govender, Vanisha; Roberts, Cameron G; Azadian, Zachary A; Bosch, Barbara; Lin, Karl Matthew; Li, Shuqi; Rock, Jeremy M bioRxiv : the preprint server for biology 37333137 2023 Jun 05
3D spheroid culturing of Astyanax mexicanus liver-derived cell lines recapitulates distinct transcriptomic and metabolic states of in vivo tissue environment. Biswas, Tathagata; Rajendran, Naresh; Hassan, Huzaifa; Zhao, Chongbei; Rohner, Nicolas bioRxiv : the preprint server for biology 37333136 2023 Jun 10
Spatial Mapping of Mobile Genetic Elements and their Cognate Hosts in Complex Microbiomes. Grodner, Benjamin; Shi, Hao; Farchione, Owen; Vill, Albert C; Ntekas, Ioannis; Diebold, Peter J; Zipfel, Warren R; Brito, Ilana L; De Vlaminck, Iwijn bioRxiv : the preprint server for biology 37333098 2023 Jun 09
Widespread impact of immunoglobulin V gene allelic polymorphisms on antibody reactivity. Yuan, Meng; Feng, Ziqi; Lv, Huibin; So, Natalie; Shen, Ivana R; Tan, Timothy J C; Teo, Qi Wen; Ouyang, Wenhao O; Talmage, Logan; Wilson, Ian A; Wu, Nicholas C bioRxiv : the preprint server for biology 37333077 2023 Jun 07
Predicting tuberculosis drug resistance with machine learning-assisted Raman spectroscopy. Ogunlade, Babatunde; Tadesse, Loza F; Li, Hongquan; Vu, Nhat; Banaei, Niaz; Barczak, Amy K; Saleh, Amr A E; Prakash, Manu; Dionne, Jennifer A ArXiv 37332564 2023 Jun 09
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Fragmentomic analysis of circulating tumor DNA-targeted cancer panels. Helzer, K T; Sharifi, M N; Sperger, J M; Shi, Y; Annala, M; Bootsma, M L; Reese, S R; Taylor, A; Kaufmann, K R; Krause, H K; Schehr, J L; Sethakorn, N; Kosoff, D; Kyriakopoulos, C; Burkard, M E; Rydzewski, N R; Yu, M; Harari, P M; Bassetti, M; Blitzer, G; Floberg, J; Sjöström, M; Quigley, D A; Dehm, S M; Armstrong, A J; Beltran, H; McKay, R R; Feng, F Y; O'Regan, R; Wisinski, K B; Emamekhoo, H; Wyatt, A W; Lang, J M; Zhao, S G Annals of oncology : official journal of the European Society for Medical Oncology 37330052 2023 Sep
CRISPR tiling screen reveals cancer epigenetic 'Goldilocks' state. Barka, Aleksia; Kohli, Rahul M; Shi, Junwei Trends in pharmacological sciences 37328396 2023 Sep
Nuclear quadrupole resonance spectroscopy with a femtotesla diamond magnetometer. Silani, Yaser; Smits, Janis; Fescenko, Ilja; Malone, Michael W; McDowell, Andrew F; Jarmola, Andrey; Kehayias, Pauli; Richards, Bryan A; Mosavian, Nazanin; Ristoff, Nathaniel; Acosta, Victor M Science advances 37327342 2023 Jun 16
Injectable pulverized electrospun poly(lactic-co-glycolic acid) fibers improve human adipose tissue engraftment and volume retention. Das, Devleena; Lawrence, William R; Diaz-Starokozheva, Ludmila; Salazar-Puerta, Ana I; Ott, Neil; Goebel, Erin R; Damughatla, Abhishek; Vidal, Pablo; Gallentine, Summer; Moore, Jordan T; Kayuha, Douglas; Mendonca, Natalia C; Albert, Jared B; Houser, Robert; Johnson, Jed; Powell, Heather; Higuita-Castro, Natalia; Stanford, Kristin I; Gallego-Perez, Daniel Journal of biomedical materials research. Part A 37326365 2023 Nov
In-depth Sequence-Function Characterization Reveals Multiple Pathways to Enhance Enzymatic Activity. Trivedi, Vikas D; Chappell, Todd C; Krishna, Naveen B; Shetty, Anuj; Sigamani, Gladstone G; Mohan, Karishma; Ramesh, Athreya; Pravin, Kumar R; Nair, Nikhil U ACS catalysis 37325394 2022 Feb 18
Preservation of ∼12-h ultradian rhythms of gene expression of mRNA and protein metabolism in the absence of canonical circadian clock. Zhu, Bokai; Liu, Silvia Frontiers in physiology 37324401 2023
Nanosensor-based monitoring of autophagy-associated lysosomal acidification in vivo. Kim, Mijin; Chen, Chen; Yaari, Zvi; Frederiksen, Rune; Randall, Ewelina; Wollowitz, Jaina; Cupo, Christian; Wu, Xiaojian; Shah, Janki; Worroll, Daniel; Lagenbacher, Rachel E; Goerzen, Dana; Li, Yue-Ming; An, Heeseon; Wang, YuHuang; Heller, Daniel A Nature chemical biology 37322156 2023 Dec
Clonal hematopoiesis is associated with protection from Alzheimer's disease. Bouzid, Hind; Belk, Julia A; Jan, Max; Qi, Yanyan; Sarnowski, Chloé; Wirth, Sara; Ma, Lisa; Chrostek, Matthew R; Ahmad, Herra; Nachun, Daniel; Yao, Winnie; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Beiser, Alexa; Bick, Alexander G; Bis, Joshua C; Fornage, Myriam; Longstreth Jr, William T; Lopez, Oscar L; Natarajan, Pradeep; Psaty, Bruce M; Satizabal, Claudia L; Weinstock, Joshua; Larson, Eric B; Crane, Paul K; Keene, C Dirk; Seshadri, Sudha; Satpathy, Ansuman T; Montine, Thomas J; Jaiswal, Siddhartha Nature medicine 37322115 2023 Jun 15
Highly multiplexed bioactivity screening reveals human and microbiota metabolome-GPCRome interactions. Chen, Haiwei; Rosen, Connor E; González-Hernández, Jaime A; Song, Deguang; Potempa, Jan; Ring, Aaron M; Palm, Noah W Cell 37321219 2023 Jul 06
DOT1L bridges transcription and heterochromatin formation at mammalian pericentromeres. Malla, Aushaq B; Yu, Haoming; Farris, Delaney; Kadimi, Srilekha; Lam, TuKiet T; Cox, Andy L; Smith, Zachary D; Lesch, Bluma J EMBO reports 37317657 2023 Aug 03
Modeling enteric glia development, physiology and disease using human pluripotent stem cells. Scantlen, Megan D; Majd, Homa; Fattahi, Faranak Neuroscience letters 37315730 2023 Aug 10
Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression. Campbell, Amy E; Dyle, Michael C; Albanese, Roberto; Matheny, Tyler; Sudheendran, Kavitha; Cortázar, Michael A; Forman, Thomas; Fu, Rui; Gillen, Austin E; Caruthers, Marvin H; Floor, Stephen N; Calviello, Lorenzo; Jagannathan, Sujatha Cell reports 37314931 2023 Jun 27
Immune profiling of murine cardiac leukocytes identifies triggering receptor expressed on myeloid cells 2 as a novel mediator of hypertensive heart failure. Smart, Charles Duncan; Fehrenbach, Daniel J; Wassenaar, Jean W; Agrawal, Vineet; Fortune, Niki L; Dixon, Debra D; Cottam, Matthew A; Hasty, Alyssa H; Hemnes, Anna R; Doran, Amanda C; Gupta, Deepak K; Madhur, Meena S Cardiovascular research 37314125 2023 Oct 24
Rescue of hearing by adenine base editing in a humanized mouse model of Usher syndrome type 1F. Peters, Cole W; Hanlon, Killian S; Ivanchenko, Maryna V; Zinn, Eric; Linarte, Elizabeth F; Li, Yaqiao; Levy, Jonathan M; Liu, David R; Kleinstiver, Benjamin P; Indzhykulian, Artur A; Corey, David P Molecular therapy : the journal of the American Society of Gene Therapy 37312453 2023 Aug 02
Histone H3 lysine 27 crotonylation mediates gene transcriptional repression in chromatin. Liu, Nan; Konuma, Tsuyoshi; Sharma, Rajal; Wang, Deyu; Zhao, Nan; Cao, Lingling; Ju, Ying; Liu, Di; Wang, Shuai; Bosch, Almudena; Sun, Yifei; Zhang, Siwei; Ji, Donglei; Nagatoishi, Satoru; Suzuki, Noa; Kikuchi, Masaki; Wakamori, Masatoshi; Zhao, Chengcheng; Ren, Chunyan; Zhou, Thomas Jiachi; Xu, Yaoyao; Meslamani, Jamel; Fu, Shibo; Umehara, Takashi; Tsumoto, Kouhei; Akashi, Satoko; Zeng, Lei; Roeder, Robert G; Walsh, Martin J; Zhang, Qiang; Zhou, Ming-Ming Molecular cell 37311463 2023 Jul 06
In vivo bone marrow microenvironment siRNA delivery using lipid-polymer nanoparticles for multiple myeloma therapy. Guimarães, Pedro P G; Figueroa-Espada, Christian G; Riley, Rachel S; Gong, Ningqiang; Xue, Lulu; Sewastianik, Tomasz; Dennis, Peter S; Loebel, Claudia; Chung, Amanda; Shepherd, Sarah J; Haley, Rebecca M; Hamilton, Alex G; El-Mayta, Rakan; Wang, Karin; Langer, Robert; Anderson, Daniel G; Carrasco, Ruben D; Mitchell, Michael J Proceedings of the National Academy of Sciences of the United States of America 37310997 2023 Jun 20
Hierarchical contribution of individual lifestyle factors and their interactions on adenomatous and serrated polyp risk. Kim, Jihee; Nath, Kirti; Schmidlin, Kurt; Schaufelberger, Helen; Quattropani, Christiana; Vannini, Simone; Mossi, Sandro; Thumshirn, Miriam; Manz, Michael; Litichevskiy, Lev; Fan, Jiaxin; Dmitrieva-Posocco, Oxana; Li, Mingyao; Levy, Maayan; Schär, Primo; Zwahlen, Marcel; Thaiss, Christoph A; Truninger, Kaspar Journal of gastroenterology 37300599 2023 Sep
RNA binding by the glucocorticoid receptor attenuates dexamethasone-induced gene activation. Lammer, Nickolaus C; Ashraf, Humza M; Ugay, Daniella A; Spencer, Sabrina L; Allen, Mary A; Batey, Robert T; Wuttke, Deborah S Scientific reports 37296231 2023 Jun 09
Dynamics of eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States. Hill, Verity; Koch, Robert T; Bialosuknia, Sean M; Ngo, Kiet; Zink, Steven D; Koetzner, Cheri A; Maffei, Joseph G; Dupuis, Alan P; Backenson, P Bryon; Oliver, JoAnne; Bransfield, Angela B; Misencik, Michael J; Petruff, Tanya A; Shepard, John J; Warren, Joshua L; Gill, Mandev S; Baele, Guy; Vogels, Chantal B F; Gallagher, Glen; Burns, Paul; Hentoff, Aaron; Smole, Sandra; Brown, Catherine; Osborne, Matthew; Kramer, Laura D; Armstrong, Philip M; Ciota, Alexander T; Grubaugh, Nathan D Current biology : CB 37295427 2023 Jun 19
An entorhinal-like region in food-caching birds. Applegate, Marissa C; Gutnichenko, Konstantin S; Mackevicius, Emily L; Aronov, Dmitriy Current biology : CB 37295426 2023 Jun 19
Modeling kidney development, disease, and plasticity with clonal expandable nephron progenitor cells and nephron organoids. Huang, Biao; Zeng, Zipeng; Li, Hui; Li, Zexu; Chen, Xi; Guo, Jinjin; Zhang, Chennan C; Schreiber, Megan E; Vonk, Ariel C; Xiang, Tianyuan; Patel, Tadrushi; Li, Yidan; Parvez, Riana K; Der, Balint; Chen, Jyun Hao; Liu, Zhenqing; Thornton, Matthew E; Grubbs, Brendan H; Diao, Yarui; Dou, Yali; Gnedeva, Ksenia; Lindström, Nils O; Ying, Qilong; Pastor-Soler, Nuria M; Fei, Teng; Hallows, Kenneth R; McMahon, Andrew P; Li, Zhongwei bioRxiv : the preprint server for biology 37293038 2023 May 25
Evolution of transient RNA structure-RNA polymerase interactions in respiratory RNA virus genomes. Rigby, Charlotte; Sabsay, Kimberly; Bisht, Karishma; Eggink, Dirk; Jalal, Hamid; Te Velthuis, Aartjan J W bioRxiv : the preprint server for biology 37292879 2023 May 26
Activity of FoxP2-positive neurons correlates with begging behavior in a social tadpole. Ludington, Sarah C; McKinney, Jordan E; Butler, Julie M; O'Connell, Lauren A bioRxiv : the preprint server for biology 37292748 2023 May 26
Dirichlet Diffusion Score Model for Biological Sequence Generation. Avdeyev, Pavel; Shi, Chenlai; Tan, Yuhao; Dudnyk, Kseniia; Zhou, Jian ArXiv 37292476 2023 Jun 16
Template-jumping prime editing enables large insertion and exon rewriting in vivo. Zheng, Chunwei; Liu, Bin; Dong, Xiaolong; Gaston, Nicholas; Sontheimer, Erik J; Xue, Wen Nature communications 37291100 2023 Jun 08
Functional gene delivery to and across brain vasculature of systemic AAVs with endothelial-specific tropism in rodents and broad tropism in primates. Chen, Xinhong; Wolfe, Damien A; Bindu, Dhanesh Sivadasan; Zhang, Mengying; Taskin, Naz; Goertsen, David; Shay, Timothy F; Sullivan, Erin E; Huang, Sheng-Fu; Ravindra Kumar, Sripriya; Arokiaraj, Cynthia M; Plattner, Viktor M; Campos, Lillian J; Mich, John K; Monet, Deja; Ngo, Victoria; Ding, Xiaozhe; Omstead, Victoria; Weed, Natalie; Bishaw, Yeme; Gore, Bryan B; Lein, Ed S; Akrami, Athena; Miller, Cory; Levi, Boaz P; Keller, Annika; Ting, Jonathan T; Fox, Andrew S; Eroglu, Cagla; Gradinaru, Viviana Nature communications 37291094 2023 Jun 08
Thyroid Cancers Exhibit Oncogene-Enhanced Macropinocytosis that Is Restrained by IGF1R and Promote Albumin-Drug Conjugate Response. Hu, Huiyu; Ng, Thomas S C; Kang, Mikyung; Scott, Ella; Li, Ran; Quintana, Jeremy M; Matvey, Dylan; Vantaku, Venkata R; Weissleder, Ralph; Parangi, Sareh; Miller, Miles A Clinical cancer research : an official journal of the American Association for Cancer Research 37289199 2023 Sep 01
Emerging roles of oligodendrocyte precursor cells in neural circuit development and remodeling. Buchanan, JoAnn; da Costa, Nuno Maçarico; Cheadle, Lucas Trends in neurosciences 37286422 2023 Aug
Proteome-Derived Peptide Libraries for Deep Specificity Profiling of N-terminal Modification Reagents. Bridge, Haley N; Weeks, Amy M Current protocols 37283519 2023 Jun
PIE-seq: identifying RNA-binding protein targets by dual RNA-deaminase editing and sequencing. Ruan, Xiangbin; Hu, Kaining; Zhang, Xiaochang Nature communications 37280234 2023 Jun 06
Identifying properties of pattern completion neurons in a computational model of the visual cortex. Baker, Casey M; Gong, Yiyang PLoS computational biology 37279242 2023 Jun
Single cell transcriptomics of bone marrow derived macrophages reveals Ccl5 as a biomarker of direct IFNAR-independent responses to DNA sensing. McCarty, Emily; Yu, Justin; Ninh, Van K; Calcagno, David M; Lee, Jodi; King, Kevin R Frontiers in immunology 37275883 2023
Spatial transcriptomics stratifies psoriatic disease severity by emergent cellular ecosystems. Castillo, Rochelle L; Sidhu, Ikjot; Dolgalev, Igor; Chu, Tinyi; Prystupa, Aleksandr; Subudhi, Ipsita; Yan, Di; Konieczny, Piotr; Hsieh, Brandon; Haberman, Rebecca H; Selvaraj, Shanmugapriya; Shiomi, Tomoe; Medina, Rhina; Girija, Parvathy Vasudevanpillai; Heguy, Adriana; Loomis, Cynthia A; Chiriboga, Luis; Ritchlin, Christopher; Garcia-Hernandez, Maria De La Luz; Carucci, John; Meehan, Shane A; Neimann, Andrea L; Gudjonsson, Johann E; Scher, Jose U; Naik, Shruti Science immunology 37267384 2023 Jun 08
Expansion microscopy: A chemical approach for super-resolution microscopy. Zhuang, Yinyin; Shi, Xiaoyu Current opinion in structural biology 37253290 2023 Aug
Immunogenetic Metabolomics Reveals Key Enzymes That Modulate CAR T-cell Metabolism and Function. Renauer, Paul; Park, Jonathan J; Bai, Meizhu; Acosta, Arianny; Lee, Won-Ho; Lin, Guang Han; Zhang, Yueqi; Dai, Xiaoyun; Wang, Guangchuan; Errami, Youssef; Wu, Terence; Clark, Paul; Ye, Lupeng; Yang, Quanjun; Chen, Sidi Cancer immunology research 37253111 2023 Aug 03
Polygenic prediction of preeclampsia and gestational hypertension. Honigberg, Michael C; Truong, Buu; Khan, Raiyan R; Xiao, Brenda; Bhatta, Laxmi; Vy, Ha My T; Guerrero, Rafael F; Schuermans, Art; Selvaraj, Margaret Sunitha; Patel, Aniruddh P; Koyama, Satoshi; Cho, So Mi Jemma; Vellarikkal, Shamsudheen Karuthedath; Trinder, Mark; Urbut, Sarah M; Gray, Kathryn J; Brumpton, Ben M; Patil, Snehal; Zöllner, Sebastian; Antopia, Mariah C; Saxena, Richa; Nadkarni, Girish N; Do, Ron; Yan, Qi; Pe'er, Itsik; Verma, Shefali Setia; Gupta, Rajat M; Haas, David M; Martin, Hilary C; van Heel, David A; Laisk, Triin; Natarajan, Pradeep Nature medicine 37248299 2023 Jun
Socioeconomic disadvantage and high-effort coping in childhood: evidence of skin-deep resilience. Ehrlich, Katherine B; Lyle, Sarah M; Corallo, Kelsey L; Brisson, Julie M; Wiggins, Elizabeth R; Yu, Tianyi; Chen, Edith; Miller, Gregory E; Brody, Gene H Journal of child psychology and psychiatry, and allied disciplines 37246563 2023 May 29
The enteric nervous system relays psychological stress to intestinal inflammation. Schneider, Kai Markus; Blank, Niklas; Alvarez, Yelina; Thum, Katharina; Lundgren, Patrick; Litichevskiy, Lev; Sleeman, Madeleine; Bahnsen, Klaas; Kim, Jihee; Kardo, Simon; Patel, Shaan; Dohnalová, Lenka; Uhr, Giulia T; Descamps, Hélène C; Kircher, Susanna; McSween, Alana M; Ardabili, Ashkan Rezazadeh; Nemec, Kelsey M; Jimenez, Monica T; Glotfelty, Lila G; Eisenberg, Joshua D; Furth, Emma E; Henao-Mejia, Jorge; Bennett, F Chris; Pierik, Marie J; Romberg-Camps, Mariëlle; Mujagic, Zlatan; Prinz, Marco; Schneider, Carolin V; Wherry, E John; Bewtra, Meenakshi; Heuckeroth, Robert O; Levy, Maayan; Thaiss, Christoph A Cell 37236193 2023 Jun 22
Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations. Djutanta, Franky; Brown, Peter T; Nainggolan, Bonfilio; Coullomb, Alexis; Radhakrishnan, Sritharini; Sentosa, Jason; Yurke, Bernard; Hariadi, Rizal F; Shepherd, Douglas P Proceedings of the National Academy of Sciences of the United States of America 37235635 2023 May 30
Label-Free Chemically and Molecularly Selective Magnetic Resonance Imaging. Wu, Tianhe; Liu, Claire; Thamizhchelvan, Anbu Mozhi; Fleischer, Candace; Peng, Xingui; Liu, Guanshu; Mao, Hui Chemical & biomedical imaging 37235188 2023 May 22
Dictionary learning for integrative, multimodal and scalable single-cell analysis. Hao, Yuhan; Stuart, Tim; Kowalski, Madeline H; Choudhary, Saket; Hoffman, Paul; Hartman, Austin; Srivastava, Avi; Molla, Gesmira; Madad, Shaista; Fernandez-Granda, Carlos; Satija, Rahul Nature biotechnology 37231261 2023 May 25
Surveying the global landscape of post-transcriptional regulators. Reynaud, Kendra; McGeachy, Anna M; Noble, David; Meacham, Zuriah A; Ingolia, Nicholas T Nature structural & molecular biology 37231154 2023 Jun
Temporal frames, temporal focus, and behavioral expectations: The persuasive impact of near and distant threats. Pokharel, Manusheela; Jensen, Jakob D; Taylor-Burton, Sophia; King, Andy J; John, Kevin K; Upshaw, Sean Social science & medicine (1982) 37229932 2023 Jul
Cardiovascular Brain Circuits. Mohanta, Sarajo K; Yin, Changjun; Weber, Christian; Godinho-Silva, Cristina; Veiga-Fernandes, Henrique; Xu, Qian J; Chang, Rui B; Habenicht, Andreas J R Circulation research 37228235 2023 May 26
Emerging frontiers in regenerative medicine. McKinley, Kara L; Longaker, Michael T; Naik, Shruti Science (New York, N.Y.) 37228215 2023 May 26
Tenascin-C Activation of Lung Fibroblasts in a 3D Synthetic Lung Extracellular Matrix Mimic. Kundu, Aritra Nath; Dougan, Carey E; Mahmoud, Samar; Kilic, Alara; Panagiotou, Alexi; Richbourg, Nathan R; Irakoze, Ninette; Peyton, Shelly R Advanced materials (Deerfield Beach, Fla.) 37227134 2023 Aug
Real-Time Visualization of Microtubule and Protofilament-Scale Dynamics in Multi-Microtubule Arrays by Atomic Force Microscopy. Wijeratne, Sithara S; Subramanian, Radhika Current protocols 37227098 2023 May
Computational Design of Molecular Probes for Electronic Preresonance Raman Scattering Microscopy. Du, Jiajun; Tao, Xuecheng; Begušić, Tomislav; Wei, Lu The journal of physical chemistry. B 37226966 2023 Jun 08
Heat shock factor 1 (HSF1) specifically potentiates c-MYC-mediated transcription independently of the canonical heat shock response. Xu, Meng; Lin, Ling; Ram, Babul Moni; Shriwas, Omprakash; Chuang, Kun-Han; Dai, Siyuan; Su, Kuo-Hui; Tang, Zijian; Dai, Chengkai Cell reports 37224019 2023 Jun 27
Stimulation-mediated reverse engineering of silent neural networks. Ren, Xiaoxuan; Bok, Ilhan; Vareberg, Adam; Hai, Aviad Journal of neurophysiology 37222450 2023 Jun 01
Development and characterization of nanobodies that specifically target the oncogenic Phosphatase of Regenerating Liver-3 (PRL-3) and impact its interaction with a known binding partner, CNNM3. Smith, Caroline N; Kihn, Kyle; Williamson, Zachary A; Chow, K Martin; Hersh, Louis B; Korotkov, Konstantin V; Deredge, Daniel; Blackburn, Jessica S PloS one 37220097 2023
A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X. Jowhar, Ziad; Xu, Albert; Venkataramanan, Srivats; Dossena, Francesco; Hoye, Mariah L; Silver, Debra L; Floor, Stephen N; Calviello, Lorenzo bioRxiv : the preprint server for biology 37214951 2023 Nov 23
Discovery and Validation of Context-Dependent Synthetic Mammalian Promoters. Zahm, Adam M; Owens, William S; Himes, Samuel R; Rondem, Kathleen E; Fallon, Braden S; Gormick, Alexa N; Bloom, Joshua S; Kosuri, Sriram; Chan, Henry; English, Justin G bioRxiv : the preprint server for biology 37214829 2023 May 11
Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E. Diamond, Paige D; McGlincy, Nicholas J; Ingolia, Nicholas T bioRxiv : the preprint server for biology 37214807 2023 May 12
Membrane compression by synaptic vesicle exocytosis triggers ultrafast endocytosis. Ogunmowo, Tyler H; Jing, Haoyuan; Raychaudhuri, Sumana; Kusick, Grant F; Imoto, Yuuta; Li, Shuo; Itoh, Kie; Ma, Ye; Jafri, Haani; Dalva, Matthew B; Chapman, Edwin R; Ha, Taekjip; Watanabe, Shigeki; Liu, Jian Nature communications 37210439 2023 May 20
Optical diffraction tomography and Raman spectroscopy reveal distinct cellular phenotypes during white and brown adipocyte differentiation. Anantha, Pooja; Liu, Zhenhui; Raj, Piyush; Barman, Ishan Biosensors & bioelectronics 37207582 2023 Sep 01
Solar Photocatalytic Phenol Polymerization and Hydrogen Generation for Flocculation of Wastewater Impurities. Hafenstine, Glenn R; Patalano, Ryan E; Harris, Alexander W; Jiang, Grace; Ma, Ke; Goodwin, Andrew P; Cha, Jennifer N ACS applied polymer materials 37206614 2019 Jun 14
Genetically engineered pair of cells for serological testing and its application for SARS-CoV-2. Ssemadaali, Marvin A; Arredondo, Juan; Buser, Elise A; Newmyer, Sherri; Radhakrishnan, Harikrishnan; Javitz, Harold S; Dandekar, Satya; Bhatnagar, Parijat Bioengineering & translational medicine 37206248 2023 May
Evidence for conservation of a primordial 12-hour ultradian gene program in humans. Zhu, Bokai; Liu, Silvia; David, Natalie L; Dion, William; Doshi, Nandini K; Siegel, Lauren B; Amorim, Tânia; Andrews, Rosemary E; Kumar, Gv Naveen; Irfan, Saad; Pesaresi, Tristan; Sharma, Ankit X; Sun, Michelle; Fazeli, Pouneh K; Steinhauser, Matthew L bioRxiv : the preprint server for biology 37205600 2023 May 02
Preservation of ∼12-hour ultradian rhythms of gene expression of mRNA and protein metabolism in the absence of canonical circadian clock. Zhu, Bokai; Liu, Silvia bioRxiv : the preprint server for biology 37205336 2023 May 02
Calcium-triggered DNA-mediated membrane fusion in synthetic cells. Hsu, Yen-Yu; Samuel, J Chen; Bernal-Chanchavac, Julio; Sharma, Bineet; Moghimianavval, Hossein; Stephanopoulos, Nicholas; Liu, Allen P bioRxiv : the preprint server for biology 37205334 2023 Jun 02
Insights into the mechanism of oligodendrocyte protection and remyelination enhancement by the integrated stress response. Chen, Yanan; Quan, Songhua; Patil, Vaibhav; Kunjamma, Rejani B; Tokars, Haley M; Leisten, Eric D; Joy, Godwin; Wills, Samantha; Chan, Jonah R; Wong, Yvette C; Popko, Brian Glia 37203250 2023 May 19
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A selectivity filter in the ER membrane protein complex limits protein misinsertion at the ER. Pleiner, Tino; Hazu, Masami; Pinton Tomaleri, Giovani; Nguyen, Vy N; Januszyk, Kurt; Voorhees, Rebecca M The Journal of cell biology 37199759 2023 Aug 07
Dynamically crosslinked thermoresponsive granular hydrogels. Lee, Hung-Pang; Cai, Kathy Xiao; Wang, Ting-Ching; Davis Jr, Ryan; Deo, Kaivalya; Singh, Kanwar Abhay; Lele, Tanmay P; Gaharwar, Akhilesh K Journal of biomedical materials research. Part A 37199446 2023 May 18
Elucidating the molecular programming of a nonlinear non-ribosomal peptide synthetase responsible for fungal siderophore biosynthesis. Jenner, Matthew; Hai, Yang; Nguyen, Hong H; Passmore, Munro; Skyrud, Will; Kim, Junyong; Garg, Neil K; Zhang, Wenjun; Ogorzalek Loo, Rachel R; Tang, Yi Nature communications 37198174 2023 May 17
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The brain's dark transcriptome: Sequencing RNA in distal compartments of neurons and glia. Ament, Seth A; Poulopoulos, Alexandros Current opinion in neurobiology 37196598 2023 Aug
Testing a Novel Deliberate Practice Intervention to Improve Diagnostic Reasoning in Trauma Triage: A Pilot Randomized Clinical Trial. Mohan, Deepika; Elmer, Jonathan; Arnold, Robert M; Forsythe, Raquel M; Fischhoff, Baruch; Rak, Kimberly; Barnes, Jaqueline L; White, Douglas B JAMA network open 37195666 2023 May 01
Ultrashort time-to-echo MR morphology of cartilaginous endplate correlates with disc degeneration in the lumbar spine. Finkenstaedt, Tim; Siriwananrangsun, Palanan; Masuda, Koichi; Bydder, Graeme M; Chen, Karen C; Bae, Won C European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society 37195362 2023 Jul
Systematic d-Amino Acid Substitutions to Control Peptide and Hydrogel Degradation in Cellular Microenvironments. Bomb, Kartik; Zhang, Qi; Ford, Eden M; Fromen, Catherine A; Kloxin, April M ACS macro letters 37195203 2023 Jun 20
Systematic identification of anticancer drug targets reveals a nucleus-to-mitochondria ROS-sensing pathway. Zhang, Junbing; Simpson, Claire M; Berner, Jacqueline; Chong, Harrison B; Fang, Jiafeng; Ordulu, Zehra; Weiss-Sadan, Tommy; Possemato, Anthony P; Harry, Stefan; Takahashi, Mariko; Yang, Tzu-Yi; Richter, Marianne; Patel, Himani; Smith, Abby E; Carlin, Alexander D; Hubertus de Groot, Adriaan F; Wolf, Konstantin; Shi, Lei; Wei, Ting-Yu; Dürr, Benedikt R; Chen, Nicholas J; Vornbäumen, Tristan; Wichmann, Nina O; Mahamdeh, Mohammed S; Pooladanda, Venkatesh; Matoba, Yusuke; Kumar, Shaan; Kim, Eugene; Bouberhan, Sara; Oliva, Esther; Rueda, Bo R; Soberman, Roy J; Bardeesy, Nabeel; Liau, Brian B; Lawrence, Michael; Stokes, Matt P; Beausoleil, Sean A; Bar-Peled, Liron Cell 37192619 2023 May 25
Consistently estimating network statistics using aggregated relational data. Breza, Emily; Chandrasekhar, Arun G; Lubold, Shane; McCormick, Tyler H; Pan, Mengjie Proceedings of the National Academy of Sciences of the United States of America 37192169 2023 May 23
Rational Design of Nanomedicine for Placental Disorders: Birthing a New Era in Women's Reproductive Health. Geisler, Hannah C; Safford, Hannah C; Mitchell, Michael J Small (Weinheim an der Bergstrasse, Germany) 37191231 2023 May 16
Non-Perturbative Identification and Subtyping of Amyloidosis in Human Kidney Tissue with Raman Spectroscopy and Machine Learning. Kim, Jeong Hee; Zhang, Chi; Sperati, Christopher John; Bagnasco, Serena M; Barman, Ishan Biosensors 37185541 2023 Apr 08
PhAT: A Flexible Open-Source GUI-Driven Toolkit for Photometry Analysis. Murphy, Kathleen Z; Haile, Eyobel D; McTigue, Anna D; Pierce, Anne F; Donaldson, Zoe R Current protocols 37184156 2023 May
Effects of antibiotic interaction on antimicrobial resistance development in wastewater. Sutradhar, Indorica; Ching, Carly; Desai, Darash; Heins, Zachary; Khalil, Ahmad S; Zaman, Muhammad H Scientific reports 37179426 2023 May 13
A gut-secreted peptide suppresses arousability from sleep. Titos, Iris; Juginović, Alen; Vaccaro, Alexandra; Nambara, Keishi; Gorelik, Pavel; Mazor, Ofer; Rogulja, Dragana Cell 37172567 2023 May 11
Genetic mapping reveals Pou2af2/OCA-T1-dependent tuning of tuft cell differentiation and intestinal type 2 immunity. Nadjsombati, Marija S; Niepoth, Natalie; Webeck, Lily M; Kennedy, Elizabeth A; Jones, Danielle L; Billipp, Tyler E; Baldridge, Megan T; Bendesky, Andres; von Moltke, Jakob Science immunology 37172102 2023 May 12
Comparative analysis of cell-cell communication at single-cell resolution. Wilk, Aaron J; Shalek, Alex K; Holmes, Susan; Blish, Catherine A Nature biotechnology 37169965 2023 May 11
Clonal haematopoiesis and atherosclerotic cardiovascular disease. Ahmad, Herra; Jaiswal, Siddhartha Nature reviews. Cardiology 37169832 2023 Jul
A CRISPR-engineered isogenic model of the 22q11.2 A-B syndromic deletion. Paranjape, Neha; Lin, Yu-Hsiu T; Flores-Ramirez, Quetzal; Sarin, Vishesh; Johnson, Amanda Brooke; Chu, Julia; Paredes, Mercedes; Wiita, Arun P Scientific reports 37169815 2023 May 11
Task-specific modulation of corticospinal neuron activity during motor learning in mice. Serradj, Najet; Marino, Francesca; Moreno-López, Yunuen; Bernstein, Amanda; Agger, Sydney; Soliman, Marwa; Sloan, Andrew; Hollis, Edmund Nature communications 37169765 2023 May 11
Arousal and Locomotion Differently Modulate Activity of Somatostatin Neurons across Cortex. Khoury, Christine F; Fala, Noelle G; Runyan, Caroline A eNeuro 37169583 2023 May
A Neuromorphic Brain Interface based on RRAM Crossbar Arrays for High Throughput Real-time Spike Sorting. Shi, Yuhan; Ananthakrishnan, Akshay; Oh, Sangheon; Liu, Xin; Hota, Gopabandhu; Cauwenberghs, Gert; Kuzum, Duygu IEEE transactions on electron devices 37168652 2022 Apr
Integration of a multi-omics stem cell differentiation dataset using a dynamical model. van den Berg, Patrick R; Bérenger-Currias, Noémie M L P; Budnik, Bogdan; Slavov, Nikolai; Semrau, Stefan PLoS genetics 37167320 2023 May
A vast evolutionarily transient translatome contributes to phenotype and fitness. Wacholder, Aaron; Parikh, Saurin Bipin; Coelho, Nelson Castilho; Acar, Omer; Houghton, Carly; Chou, Lin; Carvunis, Anne-Ruxandra Cell systems 37164009 2023 May 17
Tiered sympathetic control of cardiac function revealed by viral tracing and single cell transcriptome profiling. Sharma, Sachin; Littman, Russell; Tompkins, John D; Arneson, Douglas; Contreras, Jaime; Dajani, Al-Hassan; Ang, Kaitlyn; Tsanhani, Amit; Sun, Xin; Jay, Patrick Y; Herzog, Herbert; Yang, Xia; Ajijola, Olujimi A eLife 37162194 2023 May 10
Bacterial NLR-related proteins protect against phage. Kibby, Emily M; Conte, Amy N; Burroughs, A Maxwell; Nagy, Toni A; Vargas, Jose A; Whalen, Lindsay A; Aravind, L; Whiteley, Aaron T Cell 37160116 2023 May 25
Emerging Time-Resolved X-Ray Diffraction Approaches for Protein Dynamics. Hekstra, Doeke R Annual review of biophysics 37159292 2023 May 09
Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments. Goel, Viraat Y; Huseyin, Miles K; Hansen, Anders S Nature genetics 37157000 2023 Jun
The peritumor microenvironment: physics and immunity. Zhang, Sue; Regan, Kathryn; Najera, Julian; Grinstaff, Mark W; Datta, Meenal; Nia, Hadi T Trends in cancer 37156677 2023 Aug
TRAF4-mediated nonproteolytic ubiquitination of androgen receptor promotes castration-resistant prostate cancer. Singh, Ramesh; Meng, Huan; Shen, Tao; Lumahan, Lance Edward V; Nguyen, Steven; Shen, Hong; Dasgupta, Subhamoy; Qin, Li; Karri, Dileep; Zhu, Bokai; Yang, Feng; Coarfa, Cristian; O'Malley, Bert W; Yi, Ping Proceedings of the National Academy of Sciences of the United States of America 37155905 2023 May 16
Golgi-IP, a tool for multimodal analysis of Golgi molecular content. Fasimoye, Rotimi; Dong, Wentao; Nirujogi, Raja S; Rawat, Eshaan S; Iguchi, Miharu; Nyame, Kwamina; Phung, Toan K; Bagnoli, Enrico; Prescott, Alan R; Alessi, Dario R; Abu-Remaileh, Monther Proceedings of the National Academy of Sciences of the United States of America 37155866 2023 May 16
Targeted Enzyme Activity Imaging with Quantitative Phase Microscopy. Tanwar, Swati; Wu, Lintong; Zahn, Noah; Raj, Piyush; Ghaemi, Behnaz; Chatterjee, Arnab; Bulte, Jeff W M; Barman, Ishan Nano letters 37154678 2023 May 24
Discovery of the Azaserine Biosynthetic Pathway Uncovers a Biological Route for α-Diazoester Production. Van Cura, Devon; Ng, Tai L; Huang, Jing; Hager, Harry; Hartwig, John F; Keasling, Jay D; Balskus, Emily P Angewandte Chemie (International ed. in English) 37151182 2023 Jul 10
Vangl-dependent Wnt/planar cell polarity signaling mediates collective breast carcinoma motility and distant metastasis. VanderVorst, Kacey; Dreyer, Courtney A; Hatakeyama, Jason; Bell, George R R; Learn, Julie A; Berg, Anastasia L; Hernandez, Maria; Lee, Hyun; Collins, Sean R; Carraway 3rd, Kermit L Breast cancer research : BCR 37147680 2023 May 05
Deriving Schwann cells from hPSCs enables disease modeling and drug discovery for diabetic peripheral neuropathy. Majd, Homa; Amin, Sadaf; Ghazizadeh, Zaniar; Cesiulis, Andrius; Arroyo, Edgardo; Lankford, Karen; Majd, Alireza; Farahvashi, Sina; Chemel, Angeline K; Okoye, Mesomachukwu; Scantlen, Megan D; Tchieu, Jason; Calder, Elizabeth L; Le Rouzic, Valerie; Shibata, Bradley; Arab, Abolfazl; Goodarzi, Hani; Pasternak, Gavril; Kocsis, Jeffery D; Chen, Shuibing; Studer, Lorenz; Fattahi, Faranak Cell stem cell 37146583 2023 May 04
Loop stacking organizes genome folding from TADs to chromosomes. Hafner, Antonina; Park, Minhee; Berger, Scott E; Murphy, Sedona E; Nora, Elphège P; Boettiger, Alistair N Molecular cell 37146570 2023 May 04
A human model of asthma exacerbation reveals transcriptional programs and cell circuits specific to allergic asthma. Alladina, Jehan; Smith, Neal P; Kooistra, Tristan; Slowikowski, Kamil; Kernin, Isabela J; Deguine, Jacques; Keen, Henry L; Manakongtreecheep, Kasidet; Tantivit, Jessica; Rahimi, Rod A; Sheng, Susan L; Nguyen, Nhan D; Haring, Alexis M; Giacona, Francesca L; Hariri, Lida P; Xavier, Ramnik J; Luster, Andrew D; Villani, Alexandra-Chloé; Cho, Josalyn L; Medoff, Benjamin D Science immunology 37146132 2023 May 12
Large scale sequence alignment via efficient inference in generative models. Mongia, Mihir; Shen, Chengze; Davoodi, Arash Gholami; Marçais, Guillaume; Mohimani, Hosein Scientific reports 37142645 2023 May 04
Discovery of target genes and pathways at GWAS loci by pooled single-cell CRISPR screens. Morris, John A; Caragine, Christina; Daniloski, Zharko; Domingo, Júlia; Barry, Timothy; Lu, Lu; Davis, Kyrie; Ziosi, Marcello; Glinos, Dafni A; Hao, Stephanie; Mimitou, Eleni P; Smibert, Peter; Roeder, Kathryn; Katsevich, Eugene; Lappalainen, Tuuli; Sanjana, Neville E Science (New York, N.Y.) 37141313 2023 May 19
A systematic review of extended reality (XR) for understanding and augmenting vision loss. Kasowski, Justin; Johnson, Byron A; Neydavood, Ryan; Akkaraju, Anvitha; Beyeler, Michael Journal of vision 37140911 2023 May 02
Single-cell intracellular pH dynamics regulate the cell cycle by timing the G1 exit and G2 transition. Spear, Julia S; White, Katharine A Journal of cell science 37133398 2023 May 15
A qualitative exploration of the eight dimensions of wellness in opioid use disorder recovery during the postpartum period. Mallahan, Stephanie; Armin, Julie; Bueno, Yvonne; Huff, Allison; Allen, Alicia Drug and alcohol dependence reports 37131999 2023 Jun
Targeting Sex Determination to Suppress Mosquito Populations. Li, Ming; Kandul, Nikolay P; Sun, Ruichen; Yang, Ting; Benetta, Elena D; Brogan, Daniel J; Antoshechkin, Igor; Sánchez C, Héctor M; Zhan, Yinpeng; DeBeaubien, Nicolas A; Loh, YuMin M; Su, Matthew P; Montell, Craig; Marshall, John M; Akbari, Omar S bioRxiv : the preprint server for biology 37131747 2023 Nov 15
Conserved enhancer logic controls the notochord expression of vertebrate Brachyury. Kemmler, Cassie L; Smolikova, Jana; Moran, Hannah R; Mannion, Brandon J; Knapp, Dunja; Lim, Fabian; Czarkwiani, Anna; Hermosilla Aguayo, Viviana; Rapp, Vincent; Fitch, Olivia E; Bötschi, Seraina; Selleri, Licia; Farley, Emma; Braasch, Ingo; Yun, Maximina; Visel, Axel; Osterwalder, Marco; Mosimann, Christian; Kozmik, Zbynek; Burger, Alexa bioRxiv : the preprint server for biology 37131681 2023 Apr 20
Structure and assembly of a bacterial gasdermin pore. Johnson, Alex G; Mayer, Megan L; Schaefer, Stefan L; McNamara-Bordewick, Nora K; Hummer, Gerhard; Kranzusch, Philip J bioRxiv : the preprint server for biology 37131678 2023 Oct 26
Mechanosensation to inflammation: Roles for YAP/TAZ in innate immune cells. Meli, Vijaykumar S; Veerasubramanian, Praveen Krishna; Downing, Timothy L; Wang, Wenqi; Liu, Wendy F Science signaling 37130167 2023 May 02
The genetic determinants of recurrent somatic mutations in 43,693 blood genomes. Weinstock, Joshua S; Laurie, Cecelia A; Broome, Jai G; Taylor, Kent D; Guo, Xiuqing; Shuldiner, Alan R; O'Connell, Jeffrey R; Lewis, Joshua P; Boerwinkle, Eric; Barnes, Kathleen C; Chami, Nathalie; Kenny, Eimear E; Loos, Ruth J F; Fornage, Myriam; Redline, Susan; Cade, Brian E; Gilliland, Frank D; Chen, Zhanghua; Gauderman, W James; Kumar, Rajesh; Grammer, Leslie; Schleimer, Robert P; Psaty, Bruce M; Bis, Joshua C; Brody, Jennifer A; Silverman, Edwin K; Yun, Jeong H; Qiao, Dandi; Weiss, Scott T; Lasky-Su, Jessica; DeMeo, Dawn L; Palmer, Nicholette D; Freedman, Barry I; Bowden, Donald W; Cho, Michael H; Vasan, Ramachandran S; Johnson, Andrew D; Yanek, Lisa R; Becker, Lewis C; Kardia, Sharon; He, Jiang; Kaplan, Robert; Heckbert, Susan R; Smith, Nicholas L; Wiggins, Kerri L; Arnett, Donna K; Irvin, Marguerite R; Tiwari, Hemant; Correa, Adolfo; Raffield, Laura M; Gao, Yan; de Andrade, Mariza; Rotter, Jerome I; Rich, Stephen S; Manichaikul, Ani W; Konkle, Barbara A; Johnsen, Jill M; Wheeler, Marsha M; Custer, Brian S; Duggirala, Ravindranath; Curran, Joanne E; Blangero, John; Gui, Hongsheng; Xiao, Shujie; Williams, L Keoki; Meyers, Deborah A; Li, Xingnan; Ortega, Victor; McGarvey, Stephen; Gu, C Charles; Chen, Yii-Der Ida; Lee, Wen-Jane; Shoemaker, M Benjamin; Darbar, Dawood; Roden, Dan; Albert, Christine; Kooperberg, Charles; Desai, Pinkal; Blackwell, Thomas W; Abecasis, Goncalo R; Smith, Albert V; Kang, Hyun M; Mathias, Rasika; Natarajan, Pradeep; Jaiswal, Siddhartha; Reiner, Alexander P; Bick, Alexander G; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium Science advances 37126548 2023 Apr 28
Contribution of Somatic Ras/Raf/Mitogen-Activated Protein Kinase Variants in the Hippocampus in Drug-Resistant Mesial Temporal Lobe Epilepsy. Khoshkhoo, Sattar; Wang, Yilan; Chahine, Yasmine; Erson-Omay, E Zeynep; Robert, Stephanie M; Kiziltug, Emre; Damisah, Eyiyemisi C; Nelson-Williams, Carol; Zhu, Guangya; Kong, Wenna; Huang, August Yue; Stronge, Edward; Phillips, H Westley; Chhouk, Brian H; Bizzotto, Sara; Chen, Ming Hui; Adikari, Thiuni N; Ye, Zimeng; Witkowski, Tom; Lai, Dulcie; Lee, Nadine; Lokan, Julie; Scheffer, Ingrid E; Berkovic, Samuel F; Haider, Shozeb; Hildebrand, Michael S; Yang, Edward; Gunel, Murat; Lifton, Richard P; Richardson, R Mark; Blümcke, Ingmar; Alexandrescu, Sanda; Huttner, Anita; Heinzen, Erin L; Zhu, Jidong; Poduri, Annapurna; DeLanerolle, Nihal; Spencer, Dennis D; Lee, Eunjung Alice; Walsh, Christopher A; Kahle, Kristopher T JAMA neurology 37126322 2023 Jun 01
Toward the Next Frontiers of Vibrational Bioimaging. Wang, Haomin; Lee, Dongkwan; Wei, Lu Chemical & biomedical imaging 37122829 2023 Apr 24
Engineered Extracellular Vesicles Derived from Dermal Fibroblasts Attenuate Inflammation in a Murine Model of Acute Lung Injury. Salazar-Puerta, Ana I; Rincon-Benavides, María A; Cuellar-Gaviria, Tatiana Z; Aldana, Julian; Vasquez Martinez, Gabriela; Ortega-Pineda, Lilibeth; Das, Devleena; Dodd, Daniel; Spencer, Charles A; Deng, Binbin; McComb, David W; Englert, Joshua A; Ghadiali, Samir; Zepeda-Orozco, Diana; Wold, Loren E; Gallego-Perez, Daniel; Higuita-Castro, Natalia Advanced materials (Deerfield Beach, Fla.) 37119468 2023 Jul
Structural and functional basis of the universal transcription factor NusG pro-pausing activity in Mycobacterium tuberculosis. Delbeau, Madeleine; Omollo, Expery O; Froom, Ruby; Koh, Steven; Mooney, Rachel A; Lilic, Mirjana; Brewer, Joshua J; Rock, Jeremy; Darst, Seth A; Campbell, Elizabeth A; Landick, Robert Molecular cell 37116494 2023 May 04
Erratum. Integrated Physiology of the Exocrine and Endocrine Compartments in Pancreatic Diseases: Workshop Proceedings. Diabetes 2023;72:433-448. Mastracci, Teresa L; Apte, Minoti; Amundadottir, Laufey T; Alvarsson, Alexandra; Artandi, Steven; Bellin, Melena D; Bernal-Mizrachi, Ernesto; Caicedo, Alejandro; Campbell-Thompson, Martha; Cruz-Monserrate, Zobeida; Ouaamari, Abdelfattah El; Gaulton, Kyle J; Geisz, Andrea; Goodarzi, Mark O; Hara, Manami; Hull-Meichle, Rebecca L; Kleger, Alexander; Klein, Alison P; Kopp, Janel L; Kulkarni, Rohit N; Muzumdar, Mandar D; Naren, Anjaparavanda P; Oakes, Scott A; Olesen, Søren S; Phelps, Edward A; Powers, Alvin C; Stabler, Cherie L; Tirkes, Temel; Whitcomb, David C; Yadav, Dhiraj; Yong, Jing; Zaghloul, Norann A; Pandol, Stephen J; Sander, Maike Diabetes 37116182 2023 Aug 01
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Quantitative analysis of autophagy reveals the role of ATG9 and ATG2 in autophagosome formation. Broadbent, David G; Barnaba, Carlo; Perez, Gloria I; Schmidt, Jens C The Journal of cell biology 37115157 2023 Jul 03
Strategies for Improving Vascularization in Kidney Organoids: A Review of Current Trends. Konoe, Ran; Morizane, Ryuji Biology 37106704 2023 Mar 26
Cross-modal autoencoder framework learns holistic representations of cardiovascular state. Radhakrishnan, Adityanarayanan; Friedman, Sam F; Khurshid, Shaan; Ng, Kenney; Batra, Puneet; Lubitz, Steven A; Philippakis, Anthony A; Uhler, Caroline Nature communications 37105979 2023 Apr 28
Viral sponges sequester nucleotide signals to inactivate immunity. Richmond-Buccola, Desmond; Kranzusch, Philip J Trends in microbiology 37100632 2023 Jun
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CHD-associated enhancers shape human cardiomyocyte lineage commitment. Armendariz, Daniel A; Goetsch, Sean C; Sundarrajan, Anjana; Sivakumar, Sushama; Wang, Yihan; Xie, Shiqi; Munshi, Nikhil V; Hon, Gary C eLife 37096669 2023 Apr 25
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Whole-brain mapping reveals the divergent impact of ketamine on the dopamine system. Datta, Malika S; Chen, Yannan; Chauhan, Shradha; Zhang, Jing; De La Cruz, Estanislao Daniel; Gong, Cheng; Tomer, Raju bioRxiv : the preprint server for biology 37090584 2023 Apr 17
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A mixture model to estimate SARS-CoV-2 seroprevalence in Chennai, India. Hitchings, Matt D T; Patel, Eshan U; Khan, Rifa; Srikrishnan, Aylur K; Anderson, Mark; Kumar, K S; Wesolowski, Amy P; Iqbal, Syed H; Rodgers, Mary A; Mehta, Shruti H; Cloherty, Gavin; Cummings, Derek A T; Solomon, Sunil S American journal of epidemiology 37084085 2023 Apr 21
MitoTNT: Mitochondrial Temporal Network Tracking for 4D live-cell fluorescence microscopy data. Wang, Zichen; Natekar, Parth; Tea, Challana; Tamir, Sharon; Hakozaki, Hiroyuki; Schöneberg, Johannes PLoS computational biology 37083820 2023 Apr
Validating agent-based simulation model of hospital-associated Clostridioides difficile infection using primary hospital data. Scaria, Elizabeth; Safdar, Nasia; Alagoz, Oguzhan PloS one 37083629 2023
Integration of silicon chip microstructures for in-line microbial cell lysis in soft microfluidics. Nittala, Pavani Vamsi Krishna; Hohreiter, Allison; Rosas Linhard, Emilio; Dohn, Ryan; Mishra, Suryakant; Konda, Abhiteja; Divan, Ralu; Guha, Supratik; Basu, Anindita Lab on a chip 37083052 2023 May 02
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Integrated Physiology of the Exocrine and Endocrine Compartments in Pancreatic Diseases: Workshop Proceedings. Mastracci, Teresa L; Apte, Minoti; Amundadottir, Laufey T; Alvarsson, Alexandra; Artandi, Steven; Bellin, Melena D; Bernal-Mizrachi, Ernesto; Caicedo, Alejandro; Campbell-Thompson, Martha; Cruz-Monserrate, Zobeida; El Ouaamari, Abdelfattah; Gaulton, Kyle J; Geisz, Andrea; Goodarzi, Mark O; Hara, Manami; Hull-Meichle, Rebecca L; Kleger, Alexander; Klein, Alison P; Kopp, Janel L; Kulkarni, Rohit N; Muzumdar, Mandar D; Naren, Anjaparavanda P; Oakes, Scott A; Olesen, Søren S; Phelps, Edward A; Powers, Alvin C; Stabler, Cherie L; Tirkes, Temel; Whitcomb, David C; Yadav, Dhiraj; Yong, Jing; Zaghloul, Norann A; Sander, Maike; Pandol, Stephen J Pancreas 37078927 2022 Oct 01
Novel molecular requirements for CRISPR RNA-guided transposition. Walker, Matt W G; Klompe, Sanne E; Zhang, Dennis J; Sternberg, Samuel H Nucleic acids research 37078593 2023 May 22
PI3Kβ controls immune evasion in PTEN-deficient breast tumours. Bergholz, Johann S; Wang, Qiwei; Wang, Qi; Ramseier, Michelle; Prakadan, Sanjay; Wang, Weihua; Fang, Rong; Kabraji, Sheheryar; Zhou, Qian; Gray, G Kenneth; Abell-Hart, Kayley; Xie, Shaozhen; Guo, Xiaocan; Gu, Hao; Von, Thanh; Jiang, Tao; Tang, Shuang; Freeman, Gordon J; Kim, Hye-Jung; Shalek, Alex K; Roberts, Thomas M; Zhao, Jean J Nature 37076617 2023 May
An SPNS1-dependent lysosomal lipid transport pathway that enables cell survival under choline limitation. Scharenberg, Samantha G; Dong, Wentao; Ghoochani, Ali; Nyame, Kwamina; Levin-Konigsberg, Roni; Krishnan, Aswini R; Rawat, Eshaan S; Spees, Kaitlyn; Bassik, Michael C; Abu-Remaileh, Monther Science advances 37075117 2023 Apr 21
Computational Random Mutagenesis to Investigate RAS Mutant Signaling. Stites, Edward C Methods in molecular biology (Clifton, N.J.) 37074586 2023
Flow cytometric printing of double emulsions into open droplet arrays. Zhang, Pengfei; Xu, Linfeng; Chen, Huawei; Abate, Adam R Lab on a chip 37070963 2023 May 16
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Application of Flow Vermimetry for Quantification and Analysis of the Caenorhabditis elegans Gut Microbiome. Zhang, Fan; Blackburn, Dana; Hosea, Ciara N; Assié, Adrien; Samuel, Buck S Journal of visualized experiments : JoVE 37067276 2023 Mar 31
Keystone pathobionts associated with colorectal cancer promote oncogenic reprograming. Jones, Josh; Shi, Qiaojuan; Nath, Rahul R; Brito, Ilana L bioRxiv : the preprint server for biology 37066368 2023 Apr 03
High-throughput colocalization pipeline quantifies efficacy of mitochondrial targeting signals across different protein types. Lear, Sierra K; Nunez, Jose A; Shipman, Seth L bioRxiv : the preprint server for biology 37066162 2023 Apr 03
Sex-specific effects of chronic paternal stress on offspring development are partially mediated via mothers. Mashoodh, Rahia; Habrylo, Ireneusz B; Gudsnuk, Kathryn; Champagne, Frances A Hormones and behavior 37062113 2023 Jun
Temporally resolved transcriptional recording in E. coli DNA using a Retro-Cascorder. Lear, Sierra K; Lopez, Santiago C; González-Delgado, Alejandro; Bhattarai-Kline, Santi; Shipman, Seth L Nature protocols 37059915 2023 Jun
Nucleocytoplasmic transport of active HER2 causes fractional escape from the DCIS-like state. Wang, Lixin; Paudel, B Bishal; McKnight, R Anthony; Janes, Kevin A Nature communications 37055441 2023 Apr 13
Vibrio cholerae biofilms use modular adhesins with glycan-targeting and nonspecific surface binding domains for colonization. Huang, Xin; Nero, Thomas; Weerasekera, Ranjuna; Matej, Katherine H; Hinbest, Alex; Jiang, Zhaowei; Lee, Rebecca F; Wu, Longjun; Chak, Cecilia; Nijjer, Japinder; Gibaldi, Isabella; Yang, Hang; Gamble, Nathan; Ng, Wai-Leung; Malaker, Stacy A; Sumigray, Kaelyn; Olson, Rich; Yan, Jing Nature communications 37055389 2023 Apr 13
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Circadian rhythm disruption linked to skeletal muscle dysfunction in the Mexican Cavefish. Olsen, Luke; Krishnan, Jaya; Banks, Charles; Hassan, Huzaifa; Rohner, Nicolas Current biology : CB 37040703 2023 Apr 10
Spatiotemporally resolved transcriptomics reveals the subcellular RNA kinetic landscape. Ren, Jingyi; Zhou, Haowen; Zeng, Hu; Wang, Connie Kangni; Huang, Jiahao; Qiu, Xiaojie; Sui, Xin; Li, Qiang; Wu, Xunwei; Lin, Zuwan; Lo, Jennifer A; Maher, Kamal; He, Yichun; Tang, Xin; Lam, Judson; Chen, Hongyu; Li, Brian; Fisher, David E; Liu, Jia; Wang, Xiao Nature methods 37038000 2023 May
High-throughput identification of prefusion-stabilizing mutations in SARS-CoV-2 spike. Tan, Timothy J C; Mou, Zongjun; Lei, Ruipeng; Ouyang, Wenhao O; Yuan, Meng; Song, Ge; Andrabi, Raiees; Wilson, Ian A; Kieffer, Collin; Dai, Xinghong; Matreyek, Kenneth A; Wu, Nicholas C Nature communications 37037866 2023 Apr 10
Adverse Childhood Experiences Among Lesbian, Gay, Bisexual, and Queer Veterans. Hahn, Hunter A; Blosnich, John R American journal of preventive medicine 37037327 2023 Oct
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Measuring Consciousness in the Intensive Care Unit. Edlow, Brian L; Fecchio, Matteo; Bodien, Yelena G; Comanducci, Angela; Rosanova, Mario; Casarotto, Silvia; Young, Michael J; Li, Jian; Dougherty, Darin D; Koch, Christof; Tononi, Giulio; Massimini, Marcello; Boly, Melanie Neurocritical care 37029315 2023 Jun
Long-term tolerance to skin commensals is established neonatally through a specialized dendritic cell subgroup. Weckel, Antonin; Dhariwala, Miqdad O; Ly, Kevin; Tran, Victoria M; Ojewumi, Oluwasunmisola T; Riggs, Julianne B; Gonzalez, Jeanmarie R; Dwyer, Laura R; Okoro, Joy N; Leech, John M; Bacino, Margot S; Cho, Grace D; Merana, Geil; Anandasabapathy, Niroshana; Kumamoto, Yosuke; Scharschmidt, Tiffany C Immunity 37028427 2023 Jun 13
Structural and functional properties of mSWI/SNF chromatin remodeling complexes revealed through single-cell perturbation screens. Otto, Jordan E; Ursu, Oana; Wu, Alexander P; Winter, Evan B; Cuoco, Michael S; Ma, Sai; Qian, Kristin; Michel, Brittany C; Buenrostro, Jason D; Berger, Bonnie; Regev, Aviv; Kadoch, Cigall Molecular cell 37028419 2023 Apr 20
Systems biology approaches to unravel lymphocyte subsets and function. Kim, YeEun; Greenleaf, William J; Bendall, Sean C Current opinion in immunology 37028221 2023 Jun
Single-Molecule Displacement Mapping Indicates Unhindered Intracellular Diffusion of Small (≲1 kDa) Solutes. Choi, Alexander A; Xiang, Limin; Li, Wan; Xu, Ke Journal of the American Chemical Society 37027457 2023 Apr 07
Rate thresholds in cell signaling have functional and phenotypic consequences in non-linear time-dependent environments. Thiemicke, Alexander; Neuert, Gregor Frontiers in cell and developmental biology 37025183 2023
Dynamic antagonism between key repressive pathways maintains the placental epigenome. Weigert, Raha; Hetzel, Sara; Bailly, Nina; Haggerty, Chuck; Ilik, Ibrahim A; Yung, Philip Yuk Kwong; Navarro, Carmen; Bolondi, Adriano; Kumar, Abhishek Sampath; Anania, Chiara; Brändl, Björn; Meierhofer, David; Lupiáñez, Darío G; Müller, Franz-Josef; Aktas, Tugce; Elsässer, Simon J; Kretzmer, Helene; Smith, Zachary D; Meissner, Alexander Nature cell biology 37024684 2023 Apr
DNA double-strand break end synapsis by DNA loop extrusion. Yang, Jin H; Brandão, Hugo B; Hansen, Anders S Nature communications 37024496 2023 Apr 06
Cardiac Adipose Tissue Segmentation via Image-Level Annotations. Huang, Ziyi; Gan, Yu; Lye, Theresa; Liu, Yanchen; Zhang, Haofeng; Laine, Andrew; Angelini, Elsa; Hendon, Christine IEEE journal of biomedical and health informatics 37023157 2023 Jun
Conditional cross-design synthesis estimators for generalizability in Medicaid. Degtiar, Irina; Layton, Tim; Wallace, Jacob; Rose, Sherri Biometrics 37018228 2023 Dec
Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator. Abdelfattah, Ahmed S; Zheng, Jihong; Singh, Amrita; Huang, Yi-Chieh; Reep, Daniel; Tsegaye, Getahun; Tsang, Arthur; Arthur, Benjamin J; Rehorova, Monika; Olson, Carl V L; Shuai, Yichun; Zhang, Lixia; Fu, Tian-Ming; Milkie, Daniel E; Moya, Maria V; Weber, Timothy D; Lemire, Andrew L; Baker, Christopher A; Falco, Natalie; Zheng, Qinsi; Grimm, Jonathan B; Yip, Mighten C; Walpita, Deepika; Chase, Martin; Campagnola, Luke; Murphy, Gabe J; Wong, Allan M; Forest, Craig R; Mertz, Jerome; Economo, Michael N; Turner, Glenn C; Koyama, Minoru; Lin, Bei-Jung; Betzig, Eric; Novak, Ondrej; Lavis, Luke D; Svoboda, Karel; Korff, Wyatt; Chen, Tsai-Wen; Schreiter, Eric R; Hasseman, Jeremy P; Kolb, Ilya Neuron 37015225 2023 May 17
Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics. Huffman, R Gray; Leduc, Andrew; Wichmann, Christoph; Di Gioia, Marco; Borriello, Francesco; Specht, Harrison; Derks, Jason; Khan, Saad; Khoury, Luke; Emmott, Edward; Petelski, Aleksandra A; Perlman, David H; Cox, Jürgen; Zanoni, Ivan; Slavov, Nikolai Nature methods 37012480 2023 Apr 03
Heparan sulfate glycomimetics via iterative assembly of "clickable" disaccharides. Yang, Cangjie; Deng, Yu; Wang, Yang; Xia, Chaoshuang; Mehta, Akul Y; Baker, Kelly J; Samal, Anuj; Booneimsri, Putthipong; Lertmaneedang, Chanthakarn; Hwang, Seung; Flynn, James P; Cao, Muqing; Liu, Chao; Zhu, Alec C; Cummings, Richard D; Lin, Cheng; Mohanty, Udayan; Niu, Jia Chemical science 37006675 2023 Mar 29
Genetic architecture of human brain evolution. Fair, Tyler; Pollen, Alex A Current opinion in neurobiology 37003107 2023 Jun
Anteromedial thalamus gates the selection and stabilization of long-term memories. Toader, Andrew C; Regalado, Josue M; Li, Yan Ran; Terceros, Andrea; Yadav, Nakul; Kumar, Suraj; Satow, Sloane; Hollunder, Florian; Bonito-Oliva, Alessandra; Rajasethupathy, Priya Cell 37001501 2023 Mar 30
NK-like CD8+ γδ T cells are expanded in persistent Mycobacterium tuberculosis infection. Roy Chowdhury, Roshni; Valainis, John R; Dubey, Megha; von Boehmer, Lotta; Sola, Elsa; Wilhelmy, Julie; Guo, Jing; Kask, Oliver; Ohanyan, Mane; Sun, Meng; Huang, Huang; Huang, Xianxi; Nguyen, Patricia K; Scriba, Thomas J; Davis, Mark M; Bendall, Sean C; Chien, Yueh-Hsiu Science immunology 37000856 2023 Mar 31
Combinatorial design of nanoparticles for pulmonary mRNA delivery and genome editing. Li, Bowen; Manan, Rajith Singh; Liang, Shun-Qing; Gordon, Akiva; Jiang, Allen; Varley, Andrew; Gao, Guangping; Langer, Robert; Xue, Wen; Anderson, Daniel Nature biotechnology 36997680 2023 Oct
Wide and deep neural networks achieve consistency for classification. Radhakrishnan, Adityanarayanan; Belkin, Mikhail; Uhler, Caroline Proceedings of the National Academy of Sciences of the United States of America 36996114 2023 Apr 04
Multiomic Analysis and CRISPR Perturbation Screens Identify Endothelial Cell Programs and Novel Therapeutic Targets for Coronary Artery Disease. Gupta, Rajat M; Schnitzler, Gavin R; Fang, Shi; Lee-Kim, Vivian S; Barry, Aurelie Arteriosclerosis, thrombosis, and vascular biology 36994731 2023 May
Xiphoid nucleus of the midline thalamus controls cold-induced food seeking. Lal, Neeraj K; Le, Phuong; Aggarwal, Samarth; Zhang, Alan; Wang, Kristina; Qi, Tianbo; Pang, Zhengyuan; Yang, Dong; Nudell, Victoria; Yeo, Gene W; Banks, Alexander S; Ye, Li bioRxiv : the preprint server for biology 36993706 2023 Mar 18
Comparative landscape of genetic dependencies in human and chimpanzee stem cells. She, Richard; Fair, Tyler; Schaefer, Nathan K; Saunders, Reuben A; Pavlovic, Bryan J; Weissman, Jonathan S; Pollen, Alex A bioRxiv : the preprint server for biology 36993685 2023 Mar 20
Sensory cortical ensembles exhibit differential coupling to ripples in distinct hippocampal subregions. Jeong, Huijeong; Namboodiri, Vijay Mohan K; Jung, Min Whan; Andermann, Mark L bioRxiv : the preprint server for biology 36993665 2023 Mar 18
Topography of inputs into the hippocampal formation of a food-caching bird. Applegate, Marissa C; Gutnichenko, Konstantin S; Aronov, Dmitriy bioRxiv : the preprint server for biology 36993579 2023 Mar 15
Bacterial genome engineering using CRISPR RNA-guided transposases. Gelsinger, Diego R; Vo, Phuc Leo H; Klompe, Sanne E; Ronda, Carlotta; Wang, Harris; Sternberg, Samuel H bioRxiv : the preprint server for biology 36993567 2023 Mar 21
Tuft cell-derived acetylcholine regulates epithelial fluid secretion. Billipp, Tyler E; Fung, Connie; Webeck, Lily M; Sargent, Derek B; Gologorsky, Matthew B; McDaniel, Margaret M; Kasal, Darshan N; McGinty, John W; Barrow, Kaitlyn A; Rich, Lucille M; Barilli, Alessio; Sabat, Mark; Debley, Jason S; Myers, Richard; Howitt, Michael R; von Moltke, Jakob bioRxiv : the preprint server for biology 36993541 2023 Mar 22
Targeted DNA integration in human cells without double-strand breaks using CRISPR RNA-guided transposases. Lampe, George D; King, Rebeca T; Halpin-Healy, Tyler S; Klompe, Sanne E; Hogan, Marcus I; Vo, Phuc Leo H; Tang, Stephen; Chavez, Alejandro; Sternberg, Samuel H bioRxiv : the preprint server for biology 36993517 2023 Mar 18
Distinct value computations support rapid sequential decisions. Mah, Andrew; Schiereck, Shannon S; Bossio, Veronica; Constantinople, Christine M bioRxiv : the preprint server for biology 36993514 2023 Aug 02
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1. Abini-Agbomson, Stephen; Gretarsson, Kristjan; Shih, Rochelle M; Hsieh, Laura; Lou, Tracy; De Ioannes, Pablo; Vasilyev, Nikita; Lee, Rachel; Wang, Miao; Simon, Matthew; Armache, Jean-Paul; Nudler, Evgeny; Narlikar, Geeta; Liu, Shixin; Lu, Chao; Armache, Karim-Jean bioRxiv : the preprint server for biology 36993485 2023 Mar 19
RHINO restricts MMEJ activity to mitosis. Brambati, Alessandra; Sacco, Olivia; Porcella, Sarina; Heyza, Joshua; Kareh, Mike; Schmidt, Jens C; Sfeir, Agnel bioRxiv : the preprint server for biology 36993461 2023 Mar 16
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. Zhang, Aixin; Jin, Lei; Yao, Shenqin; Matsuyama, Makoto; van Velthoven, Cindy; Sullivan, Heather; Sun, Na; Kellis, Manolis; Tasic, Bosiljka; Wickersham, Ian R; Chen, Xiaoyin bioRxiv : the preprint server for biology 36993334 2023 Nov 10
Continuous Multiplexed Phage Genome Editing Using Recombitrons. Fishman, Chloe B; Crawford, Kate D; Bhattarai-Kline, Santi; Zhang, Karen; González-Delgado, Alejandro; Shipman, Seth L bioRxiv : the preprint server for biology 36993281 2023 Mar 25
A paradox promoted by microglia cannibalism shortens the lifespan of developmental microglia. Gordon, Hannah; Schafer, Zachary T; Smith, Cody J bioRxiv : the preprint server for biology 36993267 2023 Mar 16
Aversive experience drives offline ensemble reactivation to link memories across days. Zaki, Yosif; Pennington, Zachary T; Morales-Rodriguez, Denisse; Francisco, Taylor R; LaBanca, Alexa R; Dong, Zhe; Lamsifer, Sophia; Segura, Simón Carrillo; Chen, Hung-Tu; Wick, Zoé Christenson; Silva, Alcino J; van der Meer, Matthijs; Shuman, Tristan; Fenton, André; Rajan, Kanaka; Cai, Denise J bioRxiv : the preprint server for biology 36993254 2023 Aug 19
A Microfluidic Dual-Aptamer Sandwich Assay for Rapid and Cost-Effective Detection of Recombinant Proteins. Wen, Kechun; Chen, Yannan; Meng, Xin; Botros, Samantha; Dai, Wenting; Stojanovic, Milan N; Tomer, Raju; Lin, Qiao Microchemical journal : devoted to the application of microtechniques in all branches of science 36992861 2023 May
A single-cell atlas reveals shared and distinct immune responses and metabolic profiles in SARS-CoV-2 and HIV-1 infections. Pan, Tony; Cao, Guoshuai; Tang, Erting; Zhao, Yu; Penaloza-MacMaster, Pablo; Fang, Yun; Huang, Jun Frontiers in genetics 36992700 2023
Targeted DNA integration in human cells without double-strand breaks using CRISPR-associated transposases. Lampe, George D; King, Rebeca T; Halpin-Healy, Tyler S; Klompe, Sanne E; Hogan, Marcus I; Vo, Phuc Leo H; Tang, Stephen; Chavez, Alejandro; Sternberg, Samuel H Nature biotechnology 36991112 2023 Mar 29
Spotlight on Genetic Kidney Diseases: A Call for Drug Delivery and Nanomedicine Solutions. Trac, Noah; Ashraf, Anisa; Giblin, Joshua; Prakash, Supriya; Mitragotri, Samir; Chung, Eun Ji ACS nano 36988207 2023 Apr 11
Analysis of PEG-lipid anchor length on lipid nanoparticle pharmacokinetics and activity in a mouse model of traumatic brain injury. Waggoner, Lauren E; Miyasaki, Katelyn F; Kwon, Ester J Biomaterials science 36987922 2023 Mar 29
Sperm RNA Payload: Implications for Intergenerational Epigenetic Inheritance. Liu, Simeiyun; Sharma, Upasna International journal of molecular sciences 36982962 2023 Mar 20
Collateral activity of the CRISPR/RfxCas13d system in human cells. Shi, Peiguo; Murphy, Michael R; Aparicio, Alexis O; Kesner, Jordan S; Fang, Zhou; Chen, Ziheng; Trehan, Aditi; Guo, Yang; Wu, Xuebing Communications biology 36977923 2023 Mar 28
High-speed low-light in vivo two-photon voltage imaging of large neuronal populations. Platisa, Jelena; Ye, Xin; Ahrens, Allison M; Liu, Chang; Chen, Ichun Anderson; Davison, Ian G; Tian, Lei; Pieribone, Vincent A; Chen, Jerry L Nature methods 36973547 2023 Jul
Drug addiction unveils a repressive methylation ceiling in EZH2-mutant lymphoma. Kwok, Hui Si; Freedy, Allyson M; Siegenfeld, Allison P; Morriss, Julia W; Waterbury, Amanda L; Kissler, Stephen M; Liau, Brian B Nature chemical biology 36973442 2023 Mar 27
Spatiotemporal transcriptomics reveals pathogenesis of viral myocarditis. Mantri, Madhav; Hinchman, Meleana M; McKellar, David W; Wang, Michael F Z; Cross, Shaun T; Parker, John S L; De Vlaminck, Iwijn Nature cardiovascular research 36970396 2022 Oct
Wireless in vivo Recording of Cortical Activity by an Ion-Sensitive Field Effect Transistor. Bhatt, Suyash; Masterson, Emily; Zhu, Tianxiang; Eizadi, Jenna; George, Judy; Graupe, Nesya; Vareberg, Adam; Phillips, Jack; Bok, Ilhan; Dwyer, Matthew; Ashtiani, Alireza; Hai, Aviad Sensors and actuators. B, Chemical 36970106 2023 May 01
Multiscale mechanical characterization and computational modeling of fibrin gels. Jimenez, Julian M; Tuttle, Tyler; Guo, Yifan; Miles, Dalton; Buganza-Tepole, Adrian; Calve, Sarah Acta biomaterialia 36965611 2023 May
Somatosensory innervation of adipose tissues. Wang, Yu; Ye, Li Physiology & behavior 36965573 2023 Jun 01
Beyond the matrix: structural and physiological advancements in mitochondrial calcium signaling. MacEwen, Melissa J S; Sancak, Yasemin Biochemical Society transactions 36960768 2023 Apr 26
A gut-secreted peptide suppresses arousability from sleep. Titos, Iris; Juginović, Alen; Vaccaro, Alexandra; Nambara, Keishi; Gorelik, Pavel; Mazor, Ofer; Rogulja, Dragana Cell 36958331 2023 Mar 30
Nutrigenomic regulation of sensory plasticity. Sung, Hayeon; Vaziri, Anoumid; Wilinski, Daniel; Woerner, Riley K R; Freddolino, Peter L; Dus, Monica eLife 36951889 2023 Mar 23
Stimulating Transcription in Antibiotic-Tolerant Escherichia coli Sensitizes It to Fluoroquinolone and Nonfluoroquinolone Topoisomerase Inhibitors. LaGree, Travis J; Byrd, Brandon A; Quelle, Ryan M; Schofield, Stephanie L; Mok, Wendy W K Antimicrobial agents and chemotherapy 36951560 2023 Apr 18
On the dependent recognition of some long zinc finger proteins. Zuo, Zheng; Billings, Timothy; Walker, Michael; Petkov, Petko M; Fordyce, Polly M; Stormo, Gary D Nucleic acids research 36951113 2023 Jun 23
Advancing cell-based cancer immunotherapy through stem cell engineering. Li, Yan-Ruide; Dunn, Zachary Spencer; Yu, Yanqi; Li, Miao; Wang, Pin; Yang, Lili Cell stem cell 36948187 2023 May 04
Structural variation cooperates with permissive chromatin to control enhancer hijacking-mediated oncogenic transcription. Botten, Giovanni A; Zhang, Yuannyu; Dudnyk, Kseniia; Kim, Yoon Jung; Liu, Xin; Sanders, Jacob T; Imanci, Aygun; Droin, Nathalie; Cao, Hui; Kaphle, Pranita; Dickerson, Kathryn E; Kumar, Kirthi R; Chen, Mingyi; Chen, Weina; Solary, Eric; Ly, Peter; Zhou, Jian; Xu, Jian Blood 36947815 2023 Jul 27
Dissociable contributions of the amygdala and ventral hippocampus to stress-induced changes in defensive behavior. Pennington, Zachary T; LaBanca, Alexa R; Sompolpong, Patlapa; Wick, Zoe Christenson; Feng, Yu; Dong, Zhe; Francisco, Taylor R; Chen, Lingxuan; Fulton, Sasha L; Maze, Ian; Shuman, Tristan; Cai, Denise J bioRxiv : the preprint server for biology 36945605 2023 Mar 11
Dynamics of Eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States. Hill, Verity; Koch, Robert T; Bialosuknia, Sean M; Ngo, Kiet; Zink, Steven D; Koetzner, Cheri A; Maffei, Joseph G; Dupuis, Alan P; Backenson, P Bryon; Oliver, JoAnne; Bransfield, Angela B; Misencik, Michael J; Petruff, Tanya A; Shepard, John J; Warren, Joshua L; Gill, Mandev S; Baele, Guy; Vogels, Chantal B F; Gallagher, Glen; Burns, Paul; Hentoff, Aaron; Smole, Sandra; Brown, Catherine; Osborne, Matthew; Kramer, Laura D; Armstrong, Philip M; Ciota, Alexander T; Grubaugh, Nathan D medRxiv : the preprint server for health sciences 36945576 2023 Mar 06
O-GlcNAc modification forces the formation of an α-Synuclein amyloid-strain with notably diminished seeding activity and pathology. Balana, Aaron T; Mahul-Mellier, Anne-Laure; Nguyen, Binh A; Horvath, Mian; Javed, Afraah; Hard, Eldon R; Jasiqi, Yllza; Singh, Preeti; Afrin, Shumaila; Pedretti, Rose; Singh, Virender; Lee, Virginia M-Y; Luk, Kelvin C; Saelices, Lorena; Lashuel, Hilal A; Pratt, Matthew R bioRxiv : the preprint server for biology 36945566 2023 Mar 07
CYP4F2 is a human-specific determinant of circulating N-acyl amino acid levels. Tanzo, Julia T; Li, Veronica L; Wiggenhorn, Amanda L; Moya-Garzon, Maria Dolores; Wei, Wei; Lyu, Xuchao; Dong, Wentao; Tahir, Usman A; Chen, Zsu-Zsu; Cruz, Daniel E; Deng, Shuliang; Shi, Xu; Zheng, Shuning; Guo, Yan; Sims, Mario; Abu-Remaileh, Monther; Wilson, James G; Gerszten, Robert E; Long, Jonathan Z; Benson, Mark D bioRxiv : the preprint server for biology 36945562 2023 Mar 09
Genome-wide screen identifies host loci that modulate M. tuberculosis fitness in immunodivergent mice. Meade, Rachel K; Long, Jarukit E; Jinich, Adrian; Rhee, Kyu Y; Ashbrook, David G; Williams, Robert W; Sassetti, Christopher M; Smith, Clare M bioRxiv : the preprint server for biology 36945430 2023 Mar 06
PAM-Flexible Genome Editing with an Engineered Chimeric Cas9. Koseki, Sabrina; Hong, Lauren; Yudistyra, Vivian; Stan, Teodora; Tysinger, Emma; Silverstein, Rachel; Kramme, Christian; Amrani, Nadia; Savic, Natasha; Pacesa, Martin; Rodriguez, Tom S; Ponnapati, Manvitha; Jacobson, Joseph; Church, George; Truant, Ray; Jinek, Martin; Kleinstiver, Benjamin; Sontheimer, Erik; Chatterjee, Pranam Research square 36945419 2023 Mar 07
CRISPRa-induced upregulation of human LAMA1 compensates for LAMA2 -deficiency in Merosin-deficient congenital muscular dystrophy. Arockiaraj, Annie I; Johnson, Marie A; Munir, Anushe; Ekambaram, Prasanna; Lucas, Peter C; McAllister-Lucas, Linda M; Kemaladewi, Dwi U bioRxiv : the preprint server for biology 36945402 2023 Mar 07
Incomplete transcripts dominate the Mycobacterium tuberculosis transcriptome. Ju, Xiangwu; Li, Shuqi; Froom, Ruby; Wang, Ling; Lilic, Mirjana; Campbell, Elizabeth A; Rock, Jeremy M; Liu, Shixin bioRxiv : the preprint server for biology 36945399 2023 Mar 11
Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion. Battistello, Elena; Hixon, Kimberlee A; Comstock, Dawn E; Collings, Clayton K; Chen, Xufeng; Rodriguez Hernaez, Javier; Lee, Soobeom; Cervantes, Kasey S; Hinkley, Madeline M; Ntatsoulis, Konstantinos; Cesarano, Annamaria; Hockemeyer, Kathryn; Haining, W Nicholas; Witkowski, Matthew T; Qi, Jun; Tsirigos, Aristotelis; Perna, Fabiana; Aifantis, Iannis; Kadoch, Cigall Molecular cell 36944333 2023 Apr 20
Integrated Physiology of the Exocrine and Endocrine Compartments in Pancreatic Diseases: Workshop Proceedings. Mastracci, Teresa L; Apte, Minoti; Amundadottir, Laufey T; Alvarsson, Alexandra; Artandi, Steven; Bellin, Melena D; Bernal-Mizrachi, Ernesto; Caicedo, Alejandro; Campbell-Thompson, Martha; Cruz-Monserrate, Zobeida; El Ouaamari, Abdelfattah; Gaulton, Kyle J; Geisz, Andrea; Goodarzi, Mark O; Hara, Manami; Hull-Meichle, Rebecca L; Kleger, Alexander; Klein, Alison P; Kopp, Janel L; Kulkarni, Rohit N; Muzumdar, Mandar D; Naren, Anjaparavanda P; Oakes, Scott A; Olesen, Søren S; Phelps, Edward A; Powers, Alvin C; Stabler, Cherie L; Tirkes, Temel; Whitcomb, David C; Yadav, Dhiraj; Yong, Jing; Zaghloul, Norann A; Pandol, Stephen J; Sander, Maike Diabetes 36940317 2023 Apr 01
Tracing Founder Mutations in Circulating and Tissue-Resident Follicular Lymphoma Precursors. Schroers-Martin, Joseph G; Soo, Joanne; Brisou, Gabriel; Scherer, Florian; Kurtz, David M; Sworder, Brian J; Khodadoust, Michael S; Jin, Michael C; Bru, Agnès; Liu, Chih Long; Stehr, Henning; Vineis, Paolo; EPIC Consortium; Natkunam, Yasodha; Teras, Lauren R; Song, Joo Y; Nadel, Bertrand; Diehn, Maximilian; Roulland, Sandrine; Alizadeh, Ash A Cancer discovery 36939219 2023 Jun 02
ATP/ADP biosensor organoids for drug nephrotoxicity assessment. Susa, Koichiro; Kobayashi, Kenichi; Galichon, Pierre; Matsumoto, Takuya; Tamura, Akitoshi; Hiratsuka, Ken; Gupta, Navin R; Yazdi, Iman K; Bonventre, Joseph V; Morizane, Ryuji Frontiers in cell and developmental biology 36936695 2023
CRISPR-Cas9 Methods and Key Considerations in the Production of Aedes aegypti Mutant Strains. Sun, Ruichen; Raban, Robyn; Akbari, Omar S Cold Spring Harbor protocols 36931732 2023 Sep 01
Glycocalyx engineering with heparan sulfate mimetics attenuates Wnt activity during adipogenesis to promote glucose uptake and metabolism. Trieger, Greg W; Pessentheiner, Ariane R; Purcell, Sean C; Green, Courtney R; DeForest, Natalie; Willert, Karl; Majithia, Amit R; Metallo, Christian M; Godula, Kamil; Gordts, Philip L S M The Journal of biological chemistry 36931394 2023 May
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Conformational ensembles explain NMR spectra of frozen intrinsically disordered proteins. Kragelj, Jaka; Dumarieh, Rania; Xiao, Yiling; Frederick, Kendra K Protein science : a publication of the Protein Society 36930141 2023 May
Neural learning rules for generating flexible predictions and computing the successor representation. Fang, Ching; Aronov, Dmitriy; Abbott, L F; Mackevicius, Emily L eLife 36928104 2023 Mar 16
Electrically regulated cell-based intervention for viral infections. Newmyer, Sherri; Ssemadaali, Marvin A; Radhakrishnan, Harikrishnan; Javitz, Harold S; Bhatnagar, Parijat Bioengineering & translational medicine 36925710 2023 Mar
Foetal genome editing. Bose, Sourav K; Kennedy, Kara; Peranteau, William H Current opinion in obstetrics & gynecology 36924409 2023 Apr 01
Toward a global virus genomic surveillance network. Hill, Verity; Githinji, George; Vogels, Chantal B F; Bento, Ana I; Chaguza, Chrispin; Carrington, Christine V F; Grubaugh, Nathan D Cell host & microbe 36921604 2023 Jun 14
Comment on: Premature delivery in the domestic sow in response to in utero delivery of AAV9 to fetal piglets. Dave, Apeksha; Berkowitz, Cara L; Luks, Valerie L; White, Brandon M; Palanki, Rohan; Carpenter, Marco D; Riley, John S; Bose, Sourav K; Li, Haiying; Li, Li; Menon, Pallavi V; Teerdhala, Shiva; Ebrahimi, Mina; Zoltick, Philip W; Peranteau, William H Gene therapy 36918654 2023 Apr
Head-on and co-directional RNA polymerase collisions orchestrate bidirectional transcription termination. Wang, Ling; Watters, John W; Ju, Xiangwu; Lu, Genzhe; Liu, Shixin Molecular cell 36917983 2023 Apr 06
Upregulation of SYNGAP1 expression in mice and human neurons by redirecting alternative splicing. Yang, Runwei; Feng, Xinran; Arias-Cavieres, Alejandra; Mitchell, Robin M; Polo, Ashleigh; Hu, Kaining; Zhong, Rong; Qi, Cai; Zhang, Rachel S; Westneat, Nathaniel; Portillo, Cristabel A; Nobrega, Marcelo A; Hansel, Christian; Garcia Iii, Alfredo J; Zhang, Xiaochang Neuron 36917980 2023 May 17
MAHOMES II: A webserver for predicting if a metal binding site is enzymatic. Feehan, Ryan; Copeland, Matthew; Franklin, Meghan W; Slusky, Joanna S G Protein science : a publication of the Protein Society 36916762 2023 Apr
Neighborhood factors and triple negative breast cancer: The role of cumulative exposure to area-level risk factors. Siegel, Scott D; Brooks, Madeline M; Berman, Jesse D; Lynch, Shannon M; Sims-Mourtada, Jennifer; Schug, Zachary T; Curriero, Frank C Cancer medicine 36916687 2023 May
Differences in Beliefs About Suicide by Occupation in a Representative Sample of Adults in the United States, General Social Survey 2002-2021. Blosnich, John R; Haydinger, Alexandra M; Rhoades, Harmony; De Luca, Susan M Archives of suicide research : official journal of the International Academy for Suicide Research 36916390 2023 Mar 14
An integrated platform for high-throughput nanoscopy. Barentine, Andrew E S; Lin, Yu; Courvan, Edward M; Kidd, Phylicia; Liu, Miao; Balduf, Leonhard; Phan, Timy; Rivera-Molina, Felix; Grace, Michael R; Marin, Zach; Lessard, Mark; Rios Chen, Juliana; Wang, Siyuan; Neugebauer, Karla M; Bewersdorf, Joerg; Baddeley, David Nature biotechnology 36914886 2023 Mar 13
Metabolic reprogramming via an engineered PGC-1α improves human chimeric antigen receptor T-cell therapy against solid tumors. Lontos, Konstantinos; Wang, Yiyang; Joshi, Supriya K; Frisch, Andrew T; Watson, McLane J; Kumar, Alok; Menk, Ashley V; Wang, Yupeng; Cumberland, Rachel; Lohmueller, Jason; Carrizosa, Esteban; Boyerinas, Benjamin; Delgoffe, Greg M Journal for immunotherapy of cancer 36914208 2023 Mar
Hypoxia Potentiates the Inflammatory Fibroblast Phenotype Promoted by Pancreatic Cancer Cell-Derived Cytokines. Schwörer, Simon; Cimino, Francesco V; Ros, Manon; Tsanov, Kaloyan M; Ng, Charles; Lowe, Scott W; Carmona-Fontaine, Carlos; Thompson, Craig B Cancer research 36912618 2023 May 15
Discussion of and : New Objectives for Policy Learning. Li, Sijia; Li, Xiudi; Luedtke, Alex Journal of the American Statistical Association 36910906 2021
The Long Noncoding RNA PRANCR Is Associated with Alternative Splicing of Fibronectin-1 in Keratinocytes. Otten, Auke B C; Amarbayar, Oyumergen; Cai, Pengfei; Cheng, Binbin; Qu, Kun; Sun, Bryan K The Journal of investigative dermatology 36906126 2023 Sep
State-dependent evolutionary models reveal modes of solid tumour growth. Lewinsohn, Maya A; Bedford, Trevor; Müller, Nicola F; Feder, Alison F Nature ecology & evolution 36894662 2023 Apr
Co-opting signalling molecules enables logic-gated control of CAR T cells. Tousley, Aidan M; Rotiroti, Maria Caterina; Labanieh, Louai; Rysavy, Lea Wenting; Kim, Won-Ju; Lareau, Caleb; Sotillo, Elena; Weber, Evan W; Rietberg, Skyler P; Dalton, Guillermo Nicolas; Yin, Yajie; Klysz, Dorota; Xu, Peng; de la Serna, Eva L; Dunn, Alexander R; Satpathy, Ansuman T; Mackall, Crystal L; Majzner, Robbie G Nature 36890224 2023 Mar
Biophysical forces mediated by respiration maintain lung alveolar epithelial cell fate. Shiraishi, Kazushige; Shah, Parisha P; Morley, Michael P; Loebel, Claudia; Santini, Garrett T; Katzen, Jeremy; Basil, Maria C; Lin, Susan M; Planer, Joseph D; Cantu, Edward; Jones, Dakota L; Nottingham, Ana N; Li, Shanru; Cardenas-Diaz, Fabian L; Zhou, Su; Burdick, Jason A; Jain, Rajan; Morrisey, Edward E Cell 36870331 2023 Mar 30
Altering Specificity and Autoactivity of Plant Immune Receptors Sr33 and Sr50 Via a Rational Engineering Approach. Tamborski, Janina; Seong, Kyungyong; Liu, Furong; Staskawicz, Brian J; Krasileva, Ksenia V Molecular plant-microbe interactions : MPMI 36867580 2023 Jul
Tenascin-C activation of lung fibroblasts in a 3D synthetic lung extracellular matrix mimic. Kundu, Aritra Nath; Dougan, Carey E; Mahmoud, Samar; Kilic, Alara; Panagiotou, Alexi; Irakoze, Ninette; Richbourg, Nathan; Peyton, Shelly R bioRxiv : the preprint server for biology 36865293 2023 Mar 20
Determination of oligomeric organization of membrane proteins from native membranes at nanoscale-spatial and single-molecule resolution. Walker, Gerard; Brown, Caroline; Ge, Xiangyu; Kumar, Shailesh; Muzumdar, Mandar D; Gupta, Kallol; Bhattacharyya, Moitrayee bioRxiv : the preprint server for biology 36865290 2023 Feb 21
Myomatrix arrays for high-definition muscle recording. Chung, Bryce; Zia, Muneeb; Thomas, Kyle; Michaels, Jonathan A; Jacob, Amanda; Pack, Andrea; Williams, Matt; Nagapudi, Kailash; Teng, Lay Heng; Arrambide, Eduardo; Ouellette, Logan; Oey, Nicole; Gibbs, Rhuna; Anschutz, Philip; Lu, Jiaao; Wu, Yu; Kashefi, Mehrdad; Oya, Tomomichi; Kersten, Rhonda; Mosberger, Alice; O'Connell, Sean; Wang, Runming; Marques, Hugo; Mendes, Ana Rita; Lenschow, Constanze; Kondakath, Gayathri; Kim, Jeong Jun; Olson, William; Quinn, Kiara; Perkins, Pierce; Gatto, Graziana; Thanawalla, Ayesha; Coltman, Susan; Kim, Taegyo; Smith, Trevor; Binder-Markey, Ben; Zaback, Martin; Thompson, Christopher K; Giszter, Simon; Person, Abigail; Goulding, Martyn; Azim, Eiman; Thakor, Nitish; O'Connor, Daniel; Trimmer, Barry; Lima, Susana Q; Carey, Megan; Pandarinath, Chethan; Costa, Rui M; Pruszynski, J Andrew; Bakir, Muhannad; Sober, Samuel J bioRxiv : the preprint server for biology 36865176 2023 Feb 22
cGLRs are a diverse family of pattern recognition receptors in animal innate immunity. Li, Yao; Slavik, Kailey M; Morehouse, Benjamin R; de Oliveira Mann, Carina C; Mears, Kepler; Liu, Jingjing; Kashin, Dmitry; Schwede, Frank; Kranzusch, Philip J bioRxiv : the preprint server for biology 36865129 2023 Feb 22
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Gatto, Laurent; Aebersold, Ruedi; Cox, Juergen; Demichev, Vadim; Derks, Jason; Emmott, Edward; Franks, Alexander M; Ivanov, Alexander R; Kelly, Ryan T; Khoury, Luke; Leduc, Andrew; MacCoss, Michael J; Nemes, Peter; Perlman, David H; Petelski, Aleksandra A; Rose, Christopher M; Schoof, Erwin M; Van Eyk, Jennifer; Vanderaa, Christophe; Yates 3rd, John R; Slavov, Nikolai Nature methods 36864200 2023 Mar
Competing constraints shape the nonequilibrium limits of cellular decision-making. Lammers, Nicholas C; Flamholz, Avi I; Garcia, Hernan G Proceedings of the National Academy of Sciences of the United States of America 36862689 2023 Mar 07
A parathyroid hormone/salt-inducible kinase signaling axis controls renal vitamin D activation and organismal calcium homeostasis. Yoon, Sung-Hee; Meyer, Mark B; Arevalo Rivas, Carlos; Tekguc, Murat; Zhang, Chengcheng; Wang, Jialiang S; Castro Andrade, Christian D; Strauss, Katelyn E; Sato, Tadatoshi; Benkusky, Nancy; Lee, Seong Min; Berdeaux, Rebecca; Foretz, Marc; Sundberg, Thomas B; Xavier, Ramnik J; Adelmann, Charles H; Brooks, Daniel J; Anselmo, Anthony; Sadreyev, Ruslan I; Rosales, Ivy A; Fisher, David E; Gupta, Navin; Morizane, Ryuji; Greka, Anna; Pike, J Wesley; Mannstadt, Michael; Wein, Marc N The Journal of clinical investigation 36862513 2023 Mar 02
Measuring concordance of data sources used for infectious disease research in the USA: a retrospective data analysis. Majumder, Maimuna S; Cusick, Marika; Rose, Sherri BMJ open 36854597 2023 Feb 28
Toward Uniform Insurer Coverage for Functional MRI Following Severe Brain Injury. Young, Michael J; Bodien, Yelena G; Freeman, Holly J; Fecchio, Matteo; Edlow, Brian L The Journal of head trauma rehabilitation 36854104 2023 Jul-Aug 01
Prolonged partner separation erodes nucleus accumbens transcriptional signatures of pair bonding in male prairie voles. Sadino, Julie M; Bradeen, Xander G; Kelly, Conor J; Brusman, Liza E; Walker, Deena M; Donaldson, Zoe R eLife 36852906 2023 Feb 28
Confronting ethical and social issues related to the genetics of musicality. Gordon, Reyna L; Martschenko, Daphne O; Nayak, Srishti; Niarchou, Maria; Morrison, Matthew D; Bell, Eamonn; Jacoby, Nori; Davis, Lea K Annals of the New York Academy of Sciences 36851882 2023 Apr
Charles David Allis (1951-2023). Chi, Ping; Lewis, Peter W; Lu, Chao; Lu, Janice; Ruthenburg, Alexander J; Sabari, Benjamin R; Shechter, David; Wan, Liling; Wang, Gang Greg Nature genetics 36849658 2023 Apr
Resistance-resistant antibacterial treatment strategies. Batchelder, Jonathan I; Hare, Patricia J; Mok, Wendy W K Frontiers in antibiotics 36845830 2023
Interpersonal and self-directed violence among sexual and gender minority populations: Moving research from prevalence to prevention. Blosnich, John R Current epidemiology reports 36845319 2022 Sep
Cholesterol Regulation of Membrane Proteins Revealed by Two-Color Super-Resolution Imaging. Yuan, Zixuan; Hansen, Scott B Membranes 36837753 2023 Feb 20
Leading edge competition promotes context-dependent responses to receptor inputs to resolve directional dilemmas in neutrophil migration. Hadjitheodorou, Amalia; Bell, George R R; Ellett, Felix; Irimia, Daniel; Tibshirani, Robert; Collins, Sean R; Theriot, Julie A Cell systems 36827986 2023 Mar 15
Redox Dependent Activation of Lung Epithelial STAT3 Is Required for Inducible Protection Against Bacterial Pneumonia. Kulkarni, Vikram V; Wang, Yongxing; Pantaleon Garcia, Jezreel; Evans, Scott E American journal of respiratory cell and molecular biology 36826841 2023 Feb 24
Early Selection of the Amino Acid Alphabet Was Adaptively Shaped by Biophysical Constraints of Foldability. Makarov, Mikhail; Sanchez Rocha, Alma C; Krystufek, Robin; Cherepashuk, Ivan; Dzmitruk, Volha; Charnavets, Tatsiana; Faustino, Anneliese M; Lebl, Michal; Fujishima, Kosuke; Fried, Stephen D; Hlouchova, Klara Journal of the American Chemical Society 36826345 2023 Mar 08
Distinct genomic contexts predict gene presence-absence variation in different pathotypes of a fungal plant pathogen. Joubert, Pierre M; Krasileva, Ksenia V bioRxiv : the preprint server for biology 36824763 2023 Feb 17
Flagella-driven motility is a target of human Paneth cell defensin activity. Akahoshi, Douglas T; Natwick, Dean E; Yuan, Weirong; Lu, Wuyuan; Collins, Sean R; Bevins, Charles L PLoS pathogens 36821624 2023 Feb
Improved Yield for the Enzymatic Synthesis of Radiolabeled Nicotinamide Adenine Dinucleotide. Eller, Jared; Goyal, Shivansh; Cambronne, Xiaolu A ACS bio & med chem Au 36820310 2023 Feb 15
Cycloaddition enabled mutational profiling of 5-vinyluridine in RNA. Gupta, Mrityunjay; Wang, Jingtian; Garfio, Chely M; Vandewalle, Abigail; Spitale, Robert C Chemical communications (Cambridge, England) 36815680 2023 Mar 14
Embracing enzyme promiscuity with activity-based compressed biosensing. Holt, Brandon Alexander; Lim, Hong Seo; Sivakumar, Anirudh; Phuengkham, Hathaichanok; Su, Melanie; Tuttle, McKenzie; Xu, Yilin; Liakakos, Haley; Qiu, Peng; Kwong, Gabriel A Cell reports methods 36814844 2023 Jan 23
Chronically dysregulated corticosterone impairs dopaminergic transmission in the dorsomedial striatum by sex-divergent mechanisms. Holloway, Ashley L; Schaid, Michael D; Lerner, Talia N Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 36810463 2023 Feb 21
Cyclic AMP is a critical mediator of intrinsic drug resistance and fatty acid metabolism in M. tuberculosis. Wong, Andrew I; Beites, Tiago; Planck, Kyle A; Fieweger, Rachael A; Eckartt, Kathryn A; Li, Shuqi; Poulton, Nicholas C; VanderVen, Brian C; Rhee, Kyu Y; Schnappinger, Dirk; Ehrt, Sabine; Rock, Jeremy eLife 36810158 2023 Feb 22
FixItFelix: improving genomic analysis by fixing reference errors. Behera, Sairam; LeFaive, Jonathon; Orchard, Peter; Mahmoud, Medhat; Paulin, Luis F; Farek, Jesse; Soto, Daniela C; Parker, Stephen C J; Smith, Albert V; Dennis, Megan Y; Zook, Justin M; Sedlazeck, Fritz J Genome biology 36810122 2023 Feb 21
Genome-Scale CRISPR Screening Reveals Host Factors Required for Ribosome Formation and Viral Replication. Ohlson, Maikke B; Eitson, Jennifer L; Wells, Alexandra I; Kumar, Ashwani; Jang, Seoyeon; Ni, Chunyang; Xing, Chao; Buszczak, Michael; Schoggins, John W mBio 36809113 2023 Apr 25
The yeast ALA synthase C-terminus positively controls enzyme structure and function. Tran, Jenny U; Brown, Breann L Protein science : a publication of the Protein Society 36807942 2023 Apr
The Differential Impact of Parenting on Adolescent Externalizing Behaviors in the Context of Maternal Stress. Miller, Kristen N; Jacobson, Kristen C Journal of youth and adolescence 36807232 2023 Jul
In vitro delivery of mTOR inhibitors by kidney-targeted micelles for autosomal dominant polycystic kidney disease. Cox, Alysia; Tung, Madelynn; Li, Hui; Hallows, Kenneth R; Chung, Eun Ji SLAS technology 36804177 2023 Aug
Development of top-down cortical propagations in youth. Pines, Adam; Keller, Arielle S; Larsen, Bart; Bertolero, Maxwell; Ashourvan, Arian; Bassett, Dani S; Cieslak, Matthew; Covitz, Sydney; Fan, Yong; Feczko, Eric; Houghton, Audrey; Rueter, Amanda R; Saggar, Manish; Shafiei, Golia; Tapera, Tinashe M; Vogel, Jacob; Weinstein, Sarah M; Shinohara, Russell T; Williams, Leanne M; Fair, Damien A; Satterthwaite, Theodore D Neuron 36803653 2023 Apr 19
Single-Molecule Displacement Mapping Unveils Sign-Asymmetric Protein Charge Effects on Intraorganellar Diffusion. Xiang, Limin; Yan, Rui; Chen, Kun; Li, Wan; Xu, Ke Nano letters 36802676 2023 Mar 08
Genome-wide mapping of the Escherichia coli PhoB regulon reveals many transcriptionally inert, intragenic binding sites. Fitzgerald, Devon; Stringer, Anne; Smith, Carol; Lapierre, Pascal; Wade, Joseph T bioRxiv : the preprint server for biology 36798257 2023 Feb 07
Reconstruction of three-dimensional scroll waves in excitable media from two-dimensional observations using deep neural networks. Lebert, Jan; Mittal, Meenakshi; Christoph, Jan Physical review. E 36797900 2023 Jan
Acoustic metamaterials-driven transdermal drug delivery for rapid and on-demand management of acute disease. Xu, Junhua; Cai, Hongwei; Wu, Zhuhao; Li, Xiang; Tian, Chunhui; Ao, Zheng; Niu, Vivian C; Xiao, Xiao; Jiang, Lei; Khodoun, Marat; Rothenberg, Marc; Mackie, Ken; Chen, Jun; Lee, Luke P; Guo, Feng Nature communications 36797284 2023 Feb 16
The outer mitochondrial membrane protein TMEM11 demarcates spatially restricted BNIP3/BNIP3L-mediated mitophagy. Gok, Mehmet Oguz; Connor, Olivia M; Wang, Xun; Menezes, Cameron J; Llamas, Claire B; Mishra, Prashant; Friedman, Jonathan R The Journal of cell biology 36795401 2023 Apr 03
Genomic structural variation: A complex but important driver of human evolution. Soto, Daniela C; Uribe-Salazar, José M; Shew, Colin J; Sekar, Aarthi; McGinty, Sean P; Dennis, Megan Y American journal of biological anthropology 36794631 2023 Feb 16
New Insights into Vibrio cholerae Biofilms from Molecular Biophysics to Microbial Ecology. Tai, Jung-Shen B; Ferrell, Micah J; Yan, Jing; Waters, Christopher M Advances in experimental medicine and biology 36792869 2023
Methods special issue: RNA-targeting technologies. Knott, Gavin J; Lapinaite, Audrone; O'Connell, Mitchell R Methods (San Diego, Calif.) 36792042 2023 Apr
Ionizable Lipid Nanoparticles for In Vivo mRNA Delivery to the Placenta during Pregnancy. Swingle, Kelsey L; Safford, Hannah C; Geisler, Hannah C; Hamilton, Alex G; Thatte, Ajay S; Billingsley, Margaret M; Joseph, Ryann A; Mrksich, Kaitlin; Padilla, Marshall S; Ghalsasi, Aditi A; Alameh, Mohamad-Gabriel; Weissman, Drew; Mitchell, Michael J Journal of the American Chemical Society 36789893 2023 Mar 01
Full-colour Jabuticaba-like nanostructures via the multiplex and orthogonal self-assembly of protein-conjugated quantum dots with engineered biofilms. Deng, Zhengtao; Chen, Allen Y; Zakeri, Bijan; Zhong, Chao; Lu, Timothy K Materials horizons 36786820 2023 Apr 03
Oligodendrocyte-lineage cell exocytosis and L-type prostaglandin D synthase promote oligodendrocyte development and myelination. Pan, Lin; Trimarco, Amelia; Zhang, Alice J; Fujimori, Ko; Urade, Yoshihiro; Sun, Lu O; Taveggia, Carla; Zhang, Ye eLife 36779701 2023 Feb 13
The Mexican Cavefish Mount a Rapid and Sustained Regenerative Response Following Skeletal Muscle Injury. Olsen, Luke; Hassan, Huzaifa; Keaton, Sarah; Rohner, Nicolas bioRxiv : the preprint server for biology 36778484 2023 Feb 05
Perturb-tracing enables high-content screening of multiscale 3D genome regulators. Cheng, Yubao; Hu, Mengwei; Yang, Bing; Jensen, Tyler B; Yang, Tianqi; Yu, Ruihuan; Ma, Zhaoxia; Radda, Jonathan S D; Jin, Shengyan; Zang, Chongzhi; Wang, Siyuan bioRxiv : the preprint server for biology 36778402 2023 Nov 05
Population analyses of mosaic X chromosome loss identify genetic drivers and widespread signatures of cellular selection. Liu, Aoxing; Genovese, Giulio; Zhao, Yajie; Pirinen, Matti; Zekavat, Maryam M; Kentistou, Katherine; Yang, Zhiyu; Yu, Kai; Vlasschaert, Caitlyn; Liu, Xiaoxi; Brown, Derek W; Hudjashov, Georgi; Gorman, Bryan; Dennis, Joe; Zhou, Weiyin; Momozawa, Yukihide; Pyarajan, Saiju; Tuzov, Vlad; Pajuste, Fanny-Dhelia; Aavikko, Mervi; Sipilä, Timo P; Ghazal, Awaisa; Huang, Wen-Yi; Freedman, Neal; Song, Lei; Gardner, Eugene J; FinnGen; BCAC; MVP; Sankaran, Vijay G; Palotie, Aarno; Ollila, Hanna M; Tukiainen, Taru; Chanock, Stephen J; Mägi, Reedik; Natarajan, Pradeep; Daly, Mark J; Bick, Alexander; McCarroll, Steven A; Terao, Chikashi; Loh, Po-Ru; Ganna, Andrea; Perry, John R B; Machiela, Mitchell J medRxiv : the preprint server for health sciences 36778285 2023 Jan 31
Diversity of ribosomes at the level of rRNA variation associated with human health and disease. Rothschild, Daphna; Susanto, Teodorus Theo; Sui, Xin; Spence, Jeffrey P; Rangan, Ramya; Genuth, Naomi R; Sinnott-Armstrong, Nasa; Wang, Xiao; Pritchard, Jonathan K; Barna, Maria bioRxiv : the preprint server for biology 36778251 2023 Dec 04
Detergent headgroups control TolC folding in vitro. Ikujuni, Ayotunde Paul; Budiardjo, S Jimmy; Dhar, Rik; Slusky, Joanna S G Biophysical journal 36772796 2023 Apr 04
Mycobacterium tuberculosis Evasion of Guanylate Binding Protein-Mediated Host Defense in Mice Requires the ESX1 Secretion System. Olive, Andrew J; Smith, Clare M; Baer, Christina E; Coers, Jörn; Sassetti, Christopher M International journal of molecular sciences 36769182 2023 Feb 02
Zebrafish Cancer Avatars: A Translational Platform for Analyzing Tumor Heterogeneity and Predicting Patient Outcomes. Al-Hamaly, Majd A; Turner, Logan T; Rivera-Martinez, Angelica; Rodriguez, Analiz; Blackburn, Jessica S International journal of molecular sciences 36768609 2023 Jan 24
Pericytes and the Control of Blood Flow in Brain and Heart. Longden, Thomas A; Zhao, Guiling; Hariharan, Ashwini; Lederer, W Jonathan Annual review of physiology 36763972 2023 Feb 10
Activity-based CRISPR scanning uncovers allostery in DNA methylation maintenance machinery. Ngan, Kevin Chun-Ho; Hoenig, Samuel M; Kwok, Hui Si; Lue, Nicholas Z; Gosavi, Pallavi M; Tanner, David A; Garcia, Emma M; Lee, Ceejay; Liau, Brian B eLife 36762644 2023 Feb 10
Multi-'omics of gut microbiome-host interactions in short- and long-term myalgic encephalomyelitis/chronic fatigue syndrome patients. Xiong, Ruoyun; Gunter, Courtney; Fleming, Elizabeth; Vernon, Suzanne D; Bateman, Lucinda; Unutmaz, Derya; Oh, Julia Cell host & microbe 36758521 2023 Feb 08
Heritability of Childhood Music Engagement and Associations with Language and Executive Function: Insights from the Adolescent Brain Cognitive Development (ABCD) Study. Gustavson, Daniel E; Nayak, Srishti; Coleman, Peyton L; Iversen, John R; Lense, Miriam D; Gordon, Reyna L; Maes, Hermine H Behavior genetics 36757558 2023 May
An E1-E2 fusion protein primes antiviral immune signalling in bacteria. Ledvina, Hannah E; Ye, Qiaozhen; Gu, Yajie; Sullivan, Ashley E; Quan, Yun; Lau, Rebecca K; Zhou, Huilin; Corbett, Kevin D; Whiteley, Aaron T Nature 36755092 2023 Apr
Dysfunctional Cortical Gradient Topography in Treatment-Resistant Major Depressive Disorder. Pasquini, Lorenzo; Fryer, Susanna L; Eisendrath, Stuart J; Segal, Zindel V; Lee, Alex J; Brown, Jesse A; Saggar, Manish; Mathalon, Daniel H Biological psychiatry. Cognitive neuroscience and neuroimaging 36754677 2023 Sep
The synaptic basis of activity-dependent eye-specific competition. Zhang, Chenghang; Yadav, Swapnil; Speer, Colenso M Cell reports 36753422 2023 Feb 28
Exploring individual differences in musical rhythm and grammar skills in school-aged children with typically developing language. Nitin, Rachana; Gustavson, Daniel E; Aaron, Allison S; Boorom, Olivia A; Bush, Catherine T; Wiens, Natalie; Vaughan, Chloe; Persici, Valentina; Blain, Scott D; Soman, Uma; Hambrick, David Z; Camarata, Stephen M; McAuley, J Devin; Gordon, Reyna L Scientific reports 36750727 2023 Feb 07
Microbiome modulates immunotherapy response in cutaneous squamous cell carcinoma. Voigt, Anita Y; Walter, Andrew; Young, Timothy; Graham, John P; Batista Bittencourt, Bruna M; de Mingo Pulido, Alvaro; Prieto, Karol; Tsai, Kenneth Y; Sundberg, John P; Oh, Julia bioRxiv : the preprint server for biology 36747869 2023 Jan 25
Systematically characterizing the roles of E3-ligase family members in inflammatory responses with massively parallel Perturb-seq. Geiger-Schuller, Kathryn; Eraslan, Basak; Kuksenko, Olena; Dey, Kushal K; Jagadeesh, Karthik A; Thakore, Pratiksha I; Karayel, Ozge; Yung, Andrea R; Rajagopalan, Anugraha; Meireles, Ana M; Yang, Karren Dai; Amir-Zilberstein, Liat; Delorey, Toni; Phillips, Devan; Raychowdhury, Raktima; Moussion, Christine; Price, Alkes L; Hacohen, Nir; Doench, John G; Uhler, Caroline; Rozenblatt-Rosen, Orit; Regev, Aviv bioRxiv : the preprint server for biology 36747789 2023 Jan 24
Circadian rhythm disruption is associated with skeletal muscle dysfunction within the blind Mexican Cavefish. Olsen, Luke; Krishnan, Jaya; Banks, Charles; Hassan, Huzaifa; Rohner, Nicolas bioRxiv : the preprint server for biology 36747688 2023 Jan 25
Cholecystokinin-A Signaling Regulates Automaticity of Pacemaker Cardiomyocytes. Ruan, Hongmei; Mandla, Ravi; Ravi, Namita; Galang, Giselle; Soe, Amanda W; Olgin, Jeffrey E; Lang, Di; Vedantham, Vasanth bioRxiv : the preprint server for biology 36747643 2023 Aug 28
Functional maturation of kidney organoid tubules: Piezo1-mediated Ca2+ signaling. Carrisoza-Gaytán, Rolando; Kroll, Katharina T; Hiratsuka, Ken; Gupta, Navin R; Morizane, Ryuji; Lewis, Jennifer A; Satlin, Lisa M American journal of physiology. Cell physiology 36745528 2023 Feb 06
Testing the In Vitro and In Vivo Efficiency of mRNA-Lipid Nanoparticles Formulated by Microfluidic Mixing. El-Mayta, Rakan; Padilla, Marshall S; Billingsley, Margaret M; Han, Xuexiang; Mitchell, Michael J Journal of visualized experiments : JoVE 36744791 2023 Jan 20
Uncovering novel regulators of memory using C. elegans genetic and genomic analysis. Brandel-Ankrapp, Katie L; Arey, Rachel N Biochemical Society transactions 36744642 2023 Feb 27
The Musical Abilities, Pleiotropy, Language, and Environment (MAPLE) Framework for Understanding Musicality-Language Links Across the Lifespan. Nayak, Srishti; Coleman, Peyton L; Ladányi, Enikő; Nitin, Rachana; Gustavson, Daniel E; Fisher, Simon E; Magne, Cyrille L; Gordon, Reyna L Neurobiology of language (Cambridge, Mass.) 36742012 2022
Acoustofluidic assembly of primary tumor-derived organotypic cell clusters for rapid evaluation of cancer immunotherapy. Wu, Zhuhao; Ao, Zheng; Cai, Hongwei; Li, Xiang; Chen, Bin; Tu, Honglei; Wang, Yijie; Lu, Rongze Olivia; Gu, Mingxia; Cheng, Liang; Lu, Xin; Guo, Feng Journal of nanobiotechnology 36739414 2023 Feb 04
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Integrative in situ mapping of single-cell transcriptional states and tissue histopathology in a mouse model of Alzheimer's disease. Zeng, Hu; Huang, Jiahao; Zhou, Haowen; Meilandt, William J; Dejanovic, Borislav; Zhou, Yiming; Bohlen, Christopher J; Lee, Seung-Hye; Ren, Jingyi; Liu, Albert; Tang, Zefang; Sheng, Hao; Liu, Jia; Sheng, Morgan; Wang, Xiao Nature neuroscience 36732642 2023 Mar
Phagocytosis in the retina promotes local insulin production in the eye. Iker Etchegaray, J; Kelley, Shannon; Penberthy, Kristen; Karvelyte, Laura; Nagasaka, Yosuke; Gasperino, Sofia; Paul, Soumen; Seshadri, Vikram; Raymond, Michael; Marco, Ana Royo; Pinney, Jonathan; Stremska, Marta; Barron, Brady; Lucas, Christopher; Wase, Nishikant; Fan, Yong; Unanue, Emil; Kundu, Bijoy; Burstyn-Cohen, Tal; Perry, Justin; Ambati, Jayakrishna; Ravichandran, Kodi S Nature metabolism 36732622 2023 Feb
Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity. Gu, Yangqi; Guberman-Pfeffer, Matthew J; Srikanth, Vishok; Shen, Cong; Giska, Fabian; Gupta, Kallol; Londer, Yuri; Samatey, Fadel A; Batista, Victor S; Malvankar, Nikhil S Nature microbiology 36732469 2023 Feb
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SynthSR: A public AI tool to turn heterogeneous clinical brain scans into high-resolution T1-weighted images for 3D morphometry. Iglesias, Juan E; Billot, Benjamin; Balbastre, Yaël; Magdamo, Colin; Arnold, Steven E; Das, Sudeshna; Edlow, Brian L; Alexander, Daniel C; Golland, Polina; Fischl, Bruce Science advances 36724222 2023 Feb 03
Developmental trajectory of extracellular vesicle characteristics from the lungs of preterm infants. Ransom, Meaghan A; Bunn, Kaitlyn E; Negretti, Nicholas M; Jetter, Christopher S; Bressman, Zachary J; Sucre, Jennifer M S; Pua, Heather H American journal of physiology. Lung cellular and molecular physiology 36719083 2023 Mar 01
Exploring the genetics of rhythmic perception and musical engagement in the Vanderbilt Online Musicality Study. Gustavson, Daniel E; Coleman, Peyton L; Wang, Youjia; Nitin, Rachana; Petty, Lauren E; Bush, Catherine T; Mosing, Miriam A; Wesseldijk, Laura W; Ullén, Fredrik; 23 and Me Research Team; Below, Jennifer E; Cox, Nancy J; Gordon, Reyna L Annals of the New York Academy of Sciences 36718543 2023 Mar
Interfacial cavitation. Henzel, Thomas; Nijjer, Japinder; Chockalingam, S; Wahdat, Hares; Crosby, Alfred J; Yan, Jing; Cohen, Tal PNAS nexus 36714841 2022 Sep
Autophagy collaborates with apoptosis pathways to control myelination specificity and function. Zhang, Tingxin; Bae, Han-Gyu; Bhambri, Aksheev; Zhang, Yihe; Barbosa, Daniela; Xue, Jumin; Wazir, Sabeen; Mulinyawe, Sara B; Kim, Jun Hee; Sun, Lu O bioRxiv : the preprint server for biology 36712125 2023 Jan 02
Focused ultrasound-mediated brain genome editing. Leong, Kam; Lao, Yeh-Hsing; Ji, Robin; Zhou, Joyce; Snow, Kathy; Kwon, Nancy; Saville, Ethan; He, Siyu; Chauhan, Shradha; Chi, Chun-Wei; Datta, Malika; Zhang, Hairong; Quek, Chai Hoon; Cai, Sarah; Li, Mingqiang; Gaitan, Yaned; Bechtel, Lawrence; Wu, Shih-Ying; Lutz, Cathleen; Tomer, Raju; Murray, Stephen; Chavez, Alejandro; Konofagou, Elisa Research square 36712096 2023 Jan 20
Impaired polyamine metabolism causes behavioral and neuroanatomical defects in a novel mouse model of Snyder-Robinson Syndrome. Akinyele, Oluwaseun; Munir, Anushe; Johnson, Marie A; Perez, Megan S; Gao, Yuan; Foley, Jackson R; Wu, Yijen; Murray-Stewart, Tracy; Casero, Robert A; Bayir, Hulya; Kemaladewi, Dwi U bioRxiv : the preprint server for biology 36711956 2023 Feb 07
High intraspecies allelic diversity in Arabidopsis NLR immune receptors is associated with distinct genomic and epigenomic features. Sutherland, Chandler A; Prigozhin, Daniil M; Monroe, J Grey; Krasileva, Ksenia V bioRxiv : the preprint server for biology 36711945 2023 Oct 05
Disease-associated patterns of acetylation stabilize tau fibril formation. Li, Li; Nguyen, Binh; Mullapudi, Vishruth; Saelices, Lorena; Joachimiak, Lukasz A bioRxiv : the preprint server for biology 36711822 2023 Jan 10
Base editing as a genetic treatment for spinal muscular atrophy. Alves, Christiano R R; Ha, Leillani L; Yaworski, Rebecca; Lazzarotto, Cicera R; Christie, Kathleen A; Reilly, Aoife; Beauvais, Ariane; Doll, Roman M; de la Cruz, Demitri; Maguire, Casey A; Swoboda, Kathryn J; Tsai, Shengdar Q; Kothary, Rashmi; Kleinstiver, Benjamin P bioRxiv : the preprint server for biology 36711797 2023 Jan 21
Population-level interactions among PV, SOM, and Pyramidal neurons in cortex. Potter, Christian T; Bassi, Constanza D; Runyan, Caroline A bioRxiv : the preprint server for biology 36711788 2023 Jan 09
A dual sgRNA library design to probe genetic modifiers using genome-wide CRISPRi screens. Guna, Alina; Page, Katharine R; Replogle, Joseph M; Esantsi, Theodore K; Wang, Maxine L; Weissman, Jonathan S; Voorhees, Rebecca M bioRxiv : the preprint server for biology 36711738 2023 Aug 14
Trophoblast organoids with physiological polarity model placental structure and function. Yang, Liheng; Liang, Pengfei; Yang, Huanghe; Coyne, Carolyn B bioRxiv : the preprint server for biology 36711688 2023 Jul 17
Fusion of dysfunction muscle stem cells with myofibers induces sarcopenia in mice. Wang, Xun; Mishra, Prashant bioRxiv : the preprint server for biology 36711602 2023 Jan 21
Structure and DNA bridging activity of the essential Rec114â€"Mei4 trimer interface. Liu, Kaixian; Grasso, Emily M; Pu, Stephen; Liu, Shixin; Eliezer, David; Keeney, Scott bioRxiv : the preprint server for biology 36711595 2023 Jan 18
An entorhinal-like region in food-caching birds. Applegate, Marissa C; Gutnichenko, Konstantin S; Mackevicius, Emily L; Aronov, Dmitriy bioRxiv : the preprint server for biology 36711539 2023 Jan 06
Antimicrobial mitochondrial reactive oxygen species induction by lung epithelial metabolic reprogramming. Wang, Yongxing; Kulkarni, Vikram V; Pantaleón García, Jezreel; Leiva-Juárez, Miguel M; Goldblatt, David L; Gulraiz, Fahad; Chen, Jichao; Donepudi, Sri Ramya; Lorenzi, Philip L; Wang, Hao; Wong, Lee-Jun; Tuvim, Michael J; Evans, Scott E bioRxiv : the preprint server for biology 36711510 2023 Jan 20
Mechanical loading is required for initiation of extracellular matrix deposition at the developing murine myotendinous junction. Lipp, Sarah N; Jacobson, Kathryn R; Colling, Haley A; Tuttle, Tyler G; Miles, Dalton T; McCreery, Kaitlin P; Calve, Sarah Matrix biology : journal of the International Society for Matrix Biology 36709857 2023 Feb
Chromatin complex dependencies reveal targeting opportunities in leukemia. Najm, Fadi J; DeWeirdt, Peter; Moore, Molly M; Bevill, Samantha M; El Farran, Chadi A; Macias, Kevin A; Hegde, Mudra; Waterbury, Amanda L; Liau, Brian B; van Galen, Peter; Doench, John G; Bernstein, Bradley E Nature communications 36707513 2023 Jan 27
Ionizable lipid nanoparticles deliver mRNA to pancreatic β cells via macrophage-mediated gene transfer. Melamed, Jilian R; Yerneni, Saigopalakrishna S; Arral, Mariah L; LoPresti, Samuel T; Chaudhary, Namit; Sehrawat, Anuradha; Muramatsu, Hiromi; Alameh, Mohamad-Gabriel; Pardi, Norbert; Weissman, Drew; Gittes, George K; Whitehead, Kathryn A Science advances 36706177 2023 Jan 27
Minimal synthetic enhancers reveal control of the probability of transcriptional engagement and its timing by a morphogen gradient. Alamos, Simon; Reimer, Armando; Westrum, Clay; Turner, Meghan A; Talledo, Paul; Zhao, Jiaxi; Luu, Emma; Garcia, Hernan G Cell systems 36696901 2023 Mar 15
Immune-Epithelial Cross Talk in Regeneration and Repair. Guenin-Mace, Laure; Konieczny, Piotr; Naik, Shruti Annual review of immunology 36696569 2023 Apr 26
Effects of Wearable Fitness Trackers and Activity Adequacy Mindsets on Affect, Behavior, and Health: Longitudinal Randomized Controlled Trial. Zahrt, Octavia Hedwig; Evans, Kristopher; Murnane, Elizabeth; Santoro, Erik; Baiocchi, Michael; Landay, James; Delp, Scott; Crum, Alia Journal of medical Internet research 36696172 2023 Jan 25
Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility. Olsen, Luke; Levy, Michaella; Medley, J Kyle; Hassan, Huzaifa; Miller, Brandon; Alexander, Richard; Wilcock, Emma; Yi, Kexi; Florens, Laurence; Weaver, Kyle; McKinney, Sean A; Peuß, Robert; Persons, Jenna; Kenzior, Alexander; Maldonado, Ernesto; Delventhal, Kym; Gluesenkamp, Andrew; Mager, Edward; Coughlin, David; Rohner, Nicolas Proceedings of the National Academy of Sciences of the United States of America 36693105 2023 Jan 31
Twelve-hour rhythms in transcript expression within the human dorsolateral prefrontal cortex are altered in schizophrenia. Scott, Madeline R; Zong, Wei; Ketchesin, Kyle D; Seney, Marianne L; Tseng, George C; Zhu, Bokai; McClung, Colleen A PLoS biology 36693045 2023 Jan
An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype. Shah, Parisha P; Keough, Kathleen C; Gjoni, Ketrin; Santini, Garrett T; Abdill, Richard J; Wickramasinghe, Nadeera M; Dundes, Carolyn E; Karnay, Ashley; Chen, Angela; Salomon, Rachel E A; Walsh, Patrick J; Nguyen, Son C; Whalen, Sean; Joyce, Eric F; Loh, Kyle M; Dubois, Nicole; Pollard, Katherine S; Jain, Rajan Genome biology 36691074 2023 Jan 23
Phase Separation in Biology and Disease; Current Perspectives and Open Questions. Boeynaems, Steven; Chong, Shasha; Gsponer, Jörg; Holt, Liam; Milovanovic, Dragomir; Mitrea, Diana M; Mueller-Cajar, Oliver; Portz, Bede; Reilly, John F; Reinkemeier, Christopher D; Sabari, Benjamin R; Sanulli, Serena; Shorter, James; Sontag, Emily; Strader, Lucia; Stachowiak, Jeanne; Weber, Stephanie C; White, Michael; Zhang, Huaiying; Zweckstetter, Markus; Elbaum-Garfinkle, Shana; Kriwacki, Richard Journal of molecular biology 36690068 2023 Mar 01
The role of firearm and alcohol availability in firearm suicide: A population-based weighted case-control study. Pear, Veronica A; Wintemute, Garen J; Jewell, Nicholas P; Ahern, Jennifer Health & place 36681063 2023 Jan
Predicting Long-Term Recovery of Consciousness in Prolonged Disorders of Consciousness Based on Coma Recovery Scale-Revised Subscores: Validation of a Machine Learning-Based Prognostic Index. Magliacano, Alfonso; Liuzzi, Piergiuseppe; Formisano, Rita; Grippo, Antonello; Angelakis, Efthymios; Thibaut, Aurore; Gosseries, Olivia; Lamberti, Gianfranco; Noé, Enrique; Bagnato, Sergio; Edlow, Brian L; Lejeune, Nicolas; Veeramuthu, Vigneswaran; Trojano, Luigi; Zasler, Nathan; Schnakers, Caroline; Bartolo, Michelangelo; Mannini, Andrea; Estraneo, Anna; IBIA DoC-SIG Brain sciences 36672033 2022 Dec 27
Geographic and temporal trends in fentanyl-detected deaths in Connecticut, 2009-2019. Lu, Haidong; Crawford, Forrest W; Gonsalves, Gregg S; Grau, Lauretta E Annals of epidemiology 36669599 2023 Mar
Species-specific self-DNA detection mechanisms by mammalian cyclic GMP-AMP synthases. Mosallanejad, Kenta; Kennedy, Stephanie N; Bahleda, Kristin M; Slavik, Kailey M; Zhou, Wen; Govande, Apurva A; Hancks, Dustin C; Kranzusch, Philip J; Kagan, Jonathan C Science immunology 36662885 2023 Jan 20
Combining Metformin and Drug-Loaded Kidney-Targeting Micelles for Polycystic Kidney Disease. Jiang, Kairui; Huang, Yi; Chung, Eun Ji Cellular and molecular bioengineering 36660586 2023 Feb
The Actin Crosslinker Fascin Regulates Cell Chirality. Zhang, Haokang; Fan, Jie; Maclin, Joshua M A; Wan, Leo Q Advanced biology 36658789 2023 Jun
DNA Methylation Dynamics During Esophageal Epithelial Regeneration Following Repair with Acellular Silk Fibroin Grafts in Rat. Urban, Lauren A; Li, Jiachun; Gundogdu, Gokhan; Trinh, Annie; Shao, Hanjuan; Nguyen, Travis; Mauney, Joshua R; Downing, Timothy L Advanced biology 36658732 2023 May
Soluble and cell-based markers of immune checkpoint inhibitor-associated nephritis. Sise, Meghan E; Wang, Qiyu; Seethapathy, Harish; Moreno, Daiana; Harden, Destiny; Smith, R Neal; Rosales, Ivy A; Colvin, Robert B; Chute, Sarah; Cornell, Lynn D; Herrmann, Sandra M; Fadden, Riley; Sullivan, Ryan J; Yang, Nancy J; Barmettler, Sara; Wells, Sophia; Gupta, Shruti; Villani, Alexandra-Chloe; Reynolds, Kerry L; Farmer, Jocelyn Journal for immunotherapy of cancer 36657813 2023 Jan
CRISPR mediated transactivation in the human disease vector Aedes aegypti. Bui, Michelle; Dalla Benetta, Elena; Dong, Yuemei; Zhao, Yunchong; Yang, Ting; Li, Ming; Antoshechkin, Igor A; Buchman, Anna; Bottino-Rojas, Vanessa; James, Anthony A; Perry, Michael W; Dimopoulos, George; Akbari, Omar S PLoS pathogens 36656895 2023 Jan
Nanoparticle protein corona: from structure and function to therapeutic targeting. Bashiri, Ghazal; Padilla, Marshall S; Swingle, Kelsey L; Shepherd, Sarah J; Mitchell, Michael J; Wang, Karin Lab on a chip 36655824 2023 Mar 14
Ensemble-specific deficit in neuronal intrinsic excitability in aged mice. Chen, Lingxuan; Francisco, Taylor R; Baggetta, Austin M; Zaki, Yosif; Ramirez, Steve; Clem, Roger L; Shuman, Tristan; Cai, Denise J Neurobiology of aging 36652783 2023 Mar
Functional heterogeneity in the memory B-cell response. Henry, Brittany; Laidlaw, Brian J Current opinion in immunology 36652774 2023 Feb
A practical approach to curate clonal hematopoiesis of indeterminate potential in human genetic data sets. Vlasschaert, Caitlyn; Mack, Taralynn; Heimlich, J Brett; Niroula, Abhishek; Uddin, Md Mesbah; Weinstock, Joshua; Sharber, Brian; Silver, Alexander J; Xu, Yaomin; Savona, Michael; Gibson, Christopher; Lanktree, Matthew B; Rauh, Michael J; Ebert, Benjamin L; Natarajan, Pradeep; Jaiswal, Siddhartha; Bick, Alexander G Blood 36652671 2023 May 04
Ligand-tethered lipid nanoparticles for targeted RNA delivery to treat liver fibrosis. Han, Xuexiang; Gong, Ningqiang; Xue, Lulu; Billingsley, Margaret M; El-Mayta, Rakan; Shepherd, Sarah J; Alameh, Mohamad-Gabriel; Weissman, Drew; Mitchell, Michael J Nature communications 36650129 2023 Jan 17
Droplet-based transcriptome profiling of individual synapses. Niu, Muchun; Cao, Wenjian; Wang, Yongcheng; Zhu, Qiangyuan; Luo, Jiayi; Wang, Baiping; Zheng, Hui; Weitz, David A; Zong, Chenghang Nature biotechnology 36646931 2023 Sep
Active Microphase Separation in Mixtures of Microtubules and Tip-Accumulating Molecular Motors. Lemma, Bezia; Mitchell, Noah P; Subramanian, Radhika; Needleman, Daniel J; Dogic, Zvonimir Physical review. X 36643940 2022
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Machine learning dissection of human accelerated regions in primate neurodevelopment. Whalen, Sean; Inoue, Fumitaka; Ryu, Hane; Fair, Tyler; Markenscoff-Papadimitriou, Eirene; Keough, Kathleen; Kircher, Martin; Martin, Beth; Alvarado, Beatriz; Elor, Orry; Laboy Cintron, Dianne; Williams, Alex; Hassan Samee, Md Abul; Thomas, Sean; Krencik, Robert; Ullian, Erik M; Kriegstein, Arnold; Rubenstein, John L; Shendure, Jay; Pollen, Alex A; Ahituv, Nadav; Pollard, Katherine S Neuron 36640767 2023 Mar 15
RAMIHM generates fully human monoclonal antibodies by rapid mRNA immunization of humanized mice and BCR-seq. Ren, Ping; Peng, Lei; Yang, Luojia; Suzuki, Kazushi; Fang, Zhenhao; Renauer, Paul A; Lin, Qianqian; Bai, Meizhu; Li, Tongqing; Clark, Paul; Klein, Daryl; Chen, Sidi Cell chemical biology 36640761 2023 Jan 19
Electrical signals in the ER are cell type and stimulus specific with extreme spatial compartmentalization in neurons. Campbell, Evan P; Abushawish, Ahmed A; Valdez, Lauren A; Bell, Miriam K; Haryono, Melita; Rangamani, Padmini; Bloodgood, Brenda L Cell reports 36640310 2023 Jan 31
Stress promotes RNA G-quadruplex folding in human cells. Kharel, Prakash; Fay, Marta; Manasova, Ekaterina V; Anderson, Paul J; Kurkin, Alexander V; Guo, Junjie U; Ivanov, Pavel Nature communications 36639366 2023 Jan 13
An E3 ligase network engages GCN1 to promote the degradation of translation factors on stalled ribosomes. Oltion, Keely; Carelli, Jordan D; Yang, Tangpo; See, Stephanie K; Wang, Hao-Yuan; Kampmann, Martin; Taunton, Jack Cell 36638793 2023 Jan 19
Unraveling the dynamics of dopamine release and its actions on target cells. Sippy, Tanya; Tritsch, Nicolas X Trends in neurosciences 36635111 2023 Mar
PRR14 organizes H3K9me3-modified heterochromatin at the nuclear lamina. Kiseleva, Anna A; Cheng, Yu-Chia; Smith, Cheryl L; Katz, Richard A; Poleshko, Andrey Nucleus (Austin, Tex.) 36633363 2023 Dec
Qualitative exploration of melanoma awareness in black people in the USA. de Vere Hunt, Isabella; Owen, Sidney; Amuzie, Adaure; Nava, Vanessa; Tomz, Anna; Barnes, Leandra; Robinson, June K; Lester, Jenna; Swetter, Susan; Linos, Eleni BMJ open 36631232 2023 Jan 11
Differential Requirement for IRGM Proteins during Tuberculosis Infection in Mice. Wilburn, Kaley M; Meade, Rachel K; Heckenberg, Emma M; Dockterman, Jacob; Coers, Jörn; Sassetti, Christopher M; Olive, Andrew J; Smith, Clare M Infection and immunity 36629440 2023 Feb 16
Proline and glucose metabolic reprogramming supports vascular endothelial and medial biomass in pulmonary arterial hypertension. Wertheim, Bradley M; Wang, Rui-Sheng; Guillermier, Christelle; Hütter, Christiane Vr; Oldham, William M; Menche, Jörg; Steinhauser, Matthew L; Maron, Bradley A JCI insight 36626231 2023 Feb 22
Live Cell Lineage Tracing of Dormant Cancer Cells. Kim, Hyuna; Wirasaputra, Anna; Mohammadi, Farnaz; Kundu, Aritra Nath; Esteves, Jennifer A E; Heiser, Laura M; Meyer, Aaron S; Peyton, Shelly R Advanced healthcare materials 36625629 2023 Jun
Brominated lipid probes expose structural asymmetries in constricted membranes. Moss 3rd, Frank R; Lincoff, James; Tucker, Maxwell; Mohammed, Arshad; Grabe, Michael; Frost, Adam Nature structural & molecular biology 36624348 2023 Feb
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. Saak, Christina C; Pierce, Emily C; Dinh, Cong B; Portik, Daniel; Hall, Richard; Ashby, Meredith; Dutton, Rachel J mSystems 36622155 2023 Feb 23
Modeling Oral-Esophageal Squamous Cell Carcinoma in 3D Organoids. Flashner, Samuel; Martin, Cecilia; Matsuura, Norihiro; Shimonosono, Masataka; Tomita, Yasuto; Morimoto, Masaki; Okolo, Ogoegbunam; Yu, Victoria X; Parikh, Anuraag S; Klein-Szanto, Andres J P; Yan, Kelley; Gabre, Joel T; Lu, Chao; Momen-Heravi, Fatemeh; Rustgi, Anil K; Nakagawa, Hiroshi Journal of visualized experiments : JoVE 36622034 2022 Dec 23
Understanding and modeling nerve-cancer interactions. Le, Thanh T; Oudin, Madeleine J Disease models & mechanisms 36621886 2023 Jan 01
SARS-CoV-2 booster vaccination rescues attenuated IgG1 memory B cell response in primary antibody deficiency patients. Lin, Frank J; Doss, Alexa Michelle Altman; Davis-Adams, Hannah G; Adams, Lucas J; Hanson, Christopher H; VanBlargan, Laura A; Liang, Chieh-Yu; Chen, Rita E; Monroy, Jennifer Marie; Wedner, H James; Kulczycki, Anthony; Mantia, Tarisa L; O'Shaughnessy, Caitlin C; Raju, Saravanan; Zhao, Fang R; Rizzi, Elise; Rigell, Christopher J; Dy, Tiffany Biason; Kau, Andrew L; Ren, Zhen; Turner, Jackson S; O'Halloran, Jane A; Presti, Rachel M; Fremont, Daved H; Kendall, Peggy L; Ellebedy, Ali H; Mudd, Philip A; Diamond, Michael S; Zimmerman, Ofer; Laidlaw, Brian J Frontiers in immunology 36618402 2022
National-scale simulation of human movement in a spatially coupled individual-based model of malaria in Burkina Faso. Zupko, Robert J; Nguyen, Tran Dang; Wesolowski, Amy; Gerardin, Jaline; Boni, Maciej F Scientific reports 36609584 2023 Jan 06
A transcription factor atlas of directed differentiation. Joung, Julia; Ma, Sai; Tay, Tristan; Geiger-Schuller, Kathryn R; Kirchgatterer, Paul C; Verdine, Vanessa K; Guo, Baolin; Arias-Garcia, Mario A; Allen, William E; Singh, Ankita; Kuksenko, Olena; Abudayyeh, Omar O; Gootenberg, Jonathan S; Fu, Zhanyan; Macrae, Rhiannon K; Buenrostro, Jason D; Regev, Aviv; Zhang, Feng Cell 36608654 2023 Jan 05
Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses. Seong, Kyungyong; Krasileva, Ksenia V Nature microbiology 36604508 2023 Jan
Parkinson's Disease Genes VPS35 and EIF4G1 Interact Genetically and Converge on α-Synuclein. Dhungel, Nripesh; Eleuteri, Simona; Li, Ling-Bo; Kramer, Nicholas J; Chartron, Justin W; Spencer, Brian; Kosberg, Kori; Fields, Jerel Adam; Stafa, Klodjan; Adame, Anthony; Lashuel, Hilal; Frydman, Judith; Shen, Kang; Masliah, Eliezer; Gitler, Aaron D Neuron 36603548 2023 Jan 04
Lactate metabolism is essential in early-onset mitochondrial myopathy. Chen, Zhenkang; Bordieanu, Bogdan; Kesavan, Rushendhiran; Lesner, Nicholas P; Venigalla, Siva Sai Krishna; Shelton, Spencer D; DeBerardinis, Ralph J; Mishra, Prashant Science advances 36598990 2023 Jan 04
Wafer-Scale Fabrication of Uniform, Micrometer-Sized, Triangular Membranes on Sapphire for High-Speed Protein Sensing in a Nanopore. Xia, Pengkun; Rahman Laskar, Md Ashiqur; Wang, Chao ACS applied materials & interfaces 36598264 2023 Jan 18
Mycobacterium tuberculosis Requires the Outer Membrane Lipid Phthiocerol Dimycocerosate for Starvation-Induced Antibiotic Tolerance. Block, Alisha M; Namugenyi, Sarah B; Palani, Nagendra P; Brokaw, Alyssa M; Zhang, Leanne; Beckman, Kenneth B; Tischler, Anna D mSystems 36598240 2023 Jan 04
Dynamics of endogenous PARP1 and PARP2 during DNA damage revealed by live-cell single-molecule imaging. Mahadevan, Jyothi; Jha, Asmita; Rudolph, Johannes; Bowerman, Samuel; Narducci, Domenic; Hansen, Anders S; Luger, Karolin iScience 36594010 2023 Jan 20
Polymeric microneedles enable simultaneous delivery of cancer immunomodulatory drugs and detection of skin biomarkers. Dosta, Pere; Puigmal, Núria; Cryer, Alexander M; Rodríguez, Alma L; Scott, Ella; Weissleder, Ralph; Miller, Miles A; Artzi, Natalie Theranostics 36593949 2023
Magnify is a universal molecular anchoring strategy for expansion microscopy. Klimas, Aleksandra; Gallagher, Brendan R; Wijesekara, Piyumi; Fekir, Sinda; DiBernardo, Emma F; Cheng, Zhangyu; Stolz, Donna B; Cambi, Franca; Watkins, Simon C; Brody, Steven L; Horani, Amjad; Barth, Alison L; Moore, Christopher I; Ren, Xi; Zhao, Yongxin Nature biotechnology 36593399 2023 Jun
Integration of whole transcriptome spatial profiling with protein markers. Ben-Chetrit, Nir; Niu, Xiang; Swett, Ariel D; Sotelo, Jesus; Jiao, Maria S; Stewart, Caitlin M; Potenski, Catherine; Mielinis, Paulius; Roelli, Patrick; Stoeckius, Marlon; Landau, Dan A Nature biotechnology 36593397 2023 Jun
Nanopore sequencing of clonal IGH rearrangements in cell-free DNA as a biomarker for acute lymphoblastic leukemia. Sampathi, Shilpa; Chernyavskaya, Yelena; Haney, Meghan G; Moore, L Henry; Snyder, Isabel A; Cox, Anna H; Fuller, Brittany L; Taylor, Tamara J; Yan, Donglin; Badgett, Tom C; Blackburn, Jessica S Frontiers in oncology 36591474 2022
Carnitine octanoyltransferase is important for the assimilation of exogenous acetyl-L-carnitine into acetyl-CoA in mammalian cells. Hsu, Jake; Fatuzzo, Nina; Weng, Nielson; Michno, Wojciech; Dong, Wentao; Kienle, Maryline; Dai, Yuqin; Pasca, Anca; Abu-Remaileh, Monther; Rasgon, Natalie; Bigio, Benedetta; Nasca, Carla; Khosla, Chaitan The Journal of biological chemistry 36587768 2023 Feb
Higher-order interactions shape microbial interactions as microbial community complexity increases. Morin, Manon A; Morrison, Anneliese J; Harms, Michael J; Dutton, Rachel J Scientific reports 36587027 2022 Dec 31
Brainstem serotonin neurons selectively gate retinal information flow to thalamus. Reggiani, Jasmine D S; Jiang, Qiufen; Barbini, Melanie; Lutas, Andrew; Liang, Liang; Fernando, Jesseba; Deng, Fei; Wan, Jinxia; Li, Yulong; Chen, Chinfei; Andermann, Mark L Neuron 36584680 2023 Mar 01
Metabolic adaptation supports enhanced macrophage efferocytosis in limited-oxygen environments. Wang, Ya-Ting; Trzeciak, Alissa J; Rojas, Waleska Saitz; Saavedra, Pedro; Chen, Yan-Ting; Chirayil, Rachel; Etchegaray, Jon Iker; Lucas, Christopher D; Puleston, Daniel J; Keshari, Kayvan R; Perry, Justin S A Cell metabolism 36584675 2023 Feb 07
Dysregulation of TSP2-Rac1-WAVE2 axis in diabetic cells leads to cytoskeletal disorganization, increased cell stiffness, and dysfunction. Xing, Hao; Huang, Yaqing; Kunkemoeller, Britta H; Dahl, Peter J; Muraleetharan, Ohvia; Malvankar, Nikhil S; Murrell, Michael P; Kyriakides, Themis R Scientific reports 36577792 2022 Dec 28
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Evolutionarily conserved concepts in glial cell biology. Smith, Cody J Current opinion in neurobiology 36577179 2023 Feb
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Lipid kinase PIK3C3 maintains healthy brown and white adipose tissues to prevent metabolic diseases. Song, Wenqiang; Postoak, J Luke; Yang, Guan; Guo, Xingyi; Pua, Heather H; Bader, Jackie; Rathmell, Jeffrey C; Kobayashi, Hanako; Haase, Volker H; Leaptrot, Katrina L; Schrimpe-Rutledge, Alexandra C; Sherrod, Stacy D; McLean, John A; Zhang, Jianhua; Wu, Lan; Van Kaer, Luc Proceedings of the National Academy of Sciences of the United States of America 36574710 2023 Jan 03
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CRISPR-Suppressor Scanning for Systematic Discovery of Drug-Resistance Mutations. Ngan, Kevin C; Lue, Nicholas Z; Lee, Ceejay; Liau, Brian B Current protocols 36541895 2022 Dec
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Food memory circuits regulate eating and energy balance. Pardo-Garcia, Thibaut R; Gu, Kathleen; Woerner, Riley K R; Dus, Monica Current biology : CB 36528025 2023 Jan 23
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Phenotypic screen identifies the natural product silymarin as a novel anti-inflammatory analgesic. DuBreuil, Daniel M; Lai, Xiaofan; Zhu, Kevin; Chahyadinata, Gracesenia; Perner, Caroline; Chiang, Brenda M; Battenberg, Ashley; Sokol, Caroline L; Wainger, Brian J Molecular pain 36526437 2023
HIV integration in the human brain is linked to microglial activation and 3D genome remodeling. Plaza-Jennings, Amara L; Valada, Aditi; O'Shea, Callan; Iskhakova, Marina; Hu, Benxia; Javidfar, Behnam; Ben Hutta, Gabriella; Lambert, Tova Y; Murray, Jacinta; Kassim, Bibi; Chandrasekaran, Sandhya; Chen, Benjamin K; Morgello, Susan; Won, Hyejung; Akbarian, Schahram Molecular cell 36525955 2022 Dec 15
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Engineering a "detect and destroy" skin probiotic to combat methicillin-resistant Staphylococcus aureus. Guan, Changhui; Larson, Peter J; Fleming, Elizabeth; Tikhonov, Alexander P; Mootien, Sara; Grossman, Trudy H; Golino, Caroline; Oh, Julia PloS one 36520793 2022
Microglial pattern recognition via IL-33 promotes synaptic refinement in developing corticothalamic circuits in mice. Han, Rafael T; Vainchtein, Ilia D; Schlachetzki, Johannes C M; Cho, Frances S; Dorman, Leah C; Ahn, Eunji; Kim, Dong Kyu; Barron, Jerika J; Nakao-Inoue, Hiromi; Molofsky, Ari B; Glass, Christopher K; Paz, Jeanne T; Molofsky, Anna V The Journal of experimental medicine 36520518 2023 Feb 06
Mammalian DNA methylome dynamics: mechanisms, functions and new frontiers. Wei, Alex; Wu, Hao Development (Cambridge, England) 36519514 2022 Dec 15
Defining the boundary between life and death: New insights from neuropathology. Edlow, Brian L; Kinney, Hannah C Journal of neuropathology and experimental neurology 36519398 2022 Dec 19
A microbiome-dependent gut-brain pathway regulates motivation for exercise. Dohnalová, Lenka; Lundgren, Patrick; Carty, Jamie R E; Goldstein, Nitsan; Wenski, Sebastian L; Nanudorn, Pakjira; Thiengmag, Sirinthra; Huang, Kuei-Pin; Litichevskiy, Lev; Descamps, Hélène C; Chellappa, Karthikeyani; Glassman, Ana; Kessler, Susanne; Kim, Jihee; Cox, Timothy O; Dmitrieva-Posocco, Oxana; Wong, Andrea C; Allman, Erik L; Ghosh, Soumita; Sharma, Nitika; Sengupta, Kasturi; Cornes, Belinda; Dean, Nitai; Churchill, Gary A; Khurana, Tejvir S; Sellmyer, Mark A; FitzGerald, Garret A; Patterson, Andrew D; Baur, Joseph A; Alhadeff, Amber L; Helfrich, Eric J N; Levy, Maayan; Betley, J Nicholas; Thaiss, Christoph A Nature 36517598 2022 Dec
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Impaired ribosome-associated quality control of C9orf72 arginine-rich dipeptide-repeat proteins. Viera Ortiz, Ashley P; Cajka, Gregory; Olatunji, Olamide A; Mikytuck, Bailey; Shalem, Ophir; Lee, Edward B Brain : a journal of neurology 36516294 2023 Jul 03
Social Media for Public Health: Framework for Social Media-Based Public Health Campaigns. de Vere Hunt, Isabella; Linos, Eleni Journal of medical Internet research 36515995 2022 Dec 14
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. King, Grant A; Wettstein, Rahel; Varberg, Joseph M; Chetlapalli, Keerthana; Walsh, Madison E; Gillet, Ludovic C J; Hernández-Armenta, Claudia; Beltrao, Pedro; Aebersold, Ruedi; Jaspersen, Sue L; Matos, Joao; Ünal, Elçin The Journal of cell biology 36515990 2023 Feb 06
The conserved centrosomin motif, γTuNA, forms a dimer that directly activates microtubule nucleation by the γ-tubulin ring complex (γTuRC). Rale, Michael J; Romer, Brianna; Mahon, Brian P; Travis, Sophie M; Petry, Sabine eLife 36515268 2022 Dec 14
Testing the feasibility, acceptability, and preliminary effect of a novel deliberate practice intervention to reduce diagnostic error in trauma triage: a study protocol for a randomized pilot trial. Mohan, Deepika; Elmer, Jonathan; Arnold, Robert M; Forsythe, Raquel M; Fischhoff, Baruch; Rak, Kimberly; Barnes, Jacqueline L; White, Douglas B Pilot and feasibility studies 36510328 2022 Dec 12
Predictive modeling reveals that higher-order cooperativity drives transcriptional repression in a synthetic developmental enhancer. Kim, Yang Joon; Rhee, Kaitlin; Liu, Jonathan; Jeammet, Selene; Turner, Meghan A; Small, Stephen J; Garcia, Hernan G eLife 36503705 2022 Dec 12
Aberrant chromatin organization at the nexus of laminopathy disease pathways. Santini, Garrett T; Shah, Parisha P; Karnay, Ashley; Jain, Rajan Nucleus (Austin, Tex.) 36503349 2022 Dec
CD70-Targeted Micelles Enhance HIF2α siRNA Delivery and Inhibit Oncogenic Functions in Patient-Derived Clear Cell Renal Carcinoma Cells. Trac, Noah; Oh, Hyun Seok; Jones, Leila Izzy; Caliliw, Randy; Ohtake, Shinji; Shuch, Brian; Chung, Eun Ji Molecules (Basel, Switzerland) 36500549 2022 Dec 02
The Impact of Social and Material Resources on Resilience Communication at the Intersection of Race and Gender. Lillie, Helen M; Sánchez Sánchez, Virginia Journal of health communication 36484127 2022 Oct 03
A general method for chemogenetic control of peptide function. Shen, Jiaqi; Geng, Lequn; Li, Xingyu; Emery, Catherine; Kroning, Kayla; Shingles, Gwendolyn; Lee, Kerry; Heyden, Matthias; Li, Peng; Wang, Wenjing Nature methods 36481965 2023 Jan
Molecular recording: transcriptional data collection into the genome. Lear, Sierra K; Shipman, Seth L Current opinion in biotechnology 36481341 2023 Feb
Displacement and dissociation of oligonucleotides during DNA hairpin closure under strain. Ding, Fangyuan; Cocco, Simona; Raj, Saurabh; Manosas, Maria; Nguyen, Thao Thi Thu; Spiering, Michelle M; Bensimon, David; Allemand, Jean-François; Croquette, Vincent Nucleic acids research 36478056 2022 Nov 28
S. pombe wtf drivers use dual transcriptional regulation and selective protein exclusion from spores to cause meiotic drive. Nuckolls, Nicole L; Nidamangala Srinivasa, Ananya; Mok, Anthony C; Helston, Rachel M; Bravo Núñez, María Angélica; Lange, Jeffrey J; Gallagher, Todd J; Seidel, Chris W; Zanders, Sarah E PLoS genetics 36477651 2022 Dec
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The dynamic clustering of insulin receptor underlies its signaling and is disrupted in insulin resistance. Dall'Agnese, Alessandra; Platt, Jesse M; Zheng, Ming M; Friesen, Max; Dall'Agnese, Giuseppe; Blaise, Alyssa M; Spinelli, Jessica B; Henninger, Jonathan E; Tevonian, Erin N; Hannett, Nancy M; Lazaris, Charalampos; Drescher, Hannah K; Bartsch, Lea M; Kilgore, Henry R; Jaenisch, Rudolf; Griffith, Linda G; Cisse, Ibrahim I; Jeppesen, Jacob F; Lee, Tong I; Young, Richard A Nature communications 36473871 2022 Dec 06
Enhancer-promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1. Hsieh, Tsung-Han S; Cattoglio, Claudia; Slobodyanyuk, Elena; Hansen, Anders S; Darzacq, Xavier; Tjian, Robert Nature genetics 36471071 2022 Dec
The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location. Liu, Ilon; Jiang, Li; Samuelsson, Erik R; Marco Salas, Sergio; Beck, Alexander; Hack, Olivia A; Jeong, Daeun; Shaw, McKenzie L; Englinger, Bernhard; LaBelle, Jenna; Mire, Hafsa M; Madlener, Sibylle; Mayr, Lisa; Quezada, Michael A; Trissal, Maria; Panditharatna, Eshini; Ernst, Kati J; Vogelzang, Jayne; Gatesman, Taylor A; Halbert, Matthew E; Palova, Hana; Pokorna, Petra; Sterba, Jaroslav; Slaby, Ondrej; Geyeregger, Rene; Diaz, Aaron; Findlay, Izac J; Dun, Matthew D; Resnick, Adam; Suvà, Mario L; Jones, David T W; Agnihotri, Sameer; Svedlund, Jessica; Koschmann, Carl; Haberler, Christine; Czech, Thomas; Slavc, Irene; Cotter, Jennifer A; Ligon, Keith L; Alexandrescu, Sanda; Yung, W K Alfred; Arrillaga-Romany, Isabel; Gojo, Johannes; Monje, Michelle; Nilsson, Mats; Filbin, Mariella G Nature genetics 36471067 2022 Dec
Regenerative failure of intrahepatic biliary cells in Alagille syndrome rescued by elevated Jagged/Notch/Sox9 signaling. Zhao, Chengjian; Matalonga, Jonathan; Lancman, Joseph J; Liu, Lu; Xiao, Chaoxin; Kumar, Shiv; Gates, Keith P; He, Jiaye; Graves, Alyssa; Huisken, Jan; Azuma, Mizuki; Lu, Zhenghao; Chen, Chong; Ding, Bi-Sen; Dong, P Duc Si Proceedings of the National Academy of Sciences of the United States of America 36469766 2022 Dec 13
Subjective cancer-related cognitive impairments and salience network connectivity in breast cancer survivors. Henneghan, Ashley M; Kesler, Shelli R Journal of cancer survivorship : research and practice 36464750 2023 Aug
Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer's disease. Zhang, Xinyi; Wang, Xiao; Shivashankar, G V; Uhler, Caroline Nature communications 36463283 2022 Dec 03
A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA. Doebley, Anna-Lisa; Ko, Minjeong; Liao, Hanna; Cruikshank, A Eden; Santos, Katheryn; Kikawa, Caroline; Hiatt, Joseph B; Patton, Robert D; De Sarkar, Navonil; Collier, Katharine A; Hoge, Anna C H; Chen, Katharine; Zimmer, Anat; Weber, Zachary T; Adil, Mohamed; Reichel, Jonathan B; Polak, Paz; Adalsteinsson, Viktor A; Nelson, Peter S; MacPherson, David; Parsons, Heather A; Stover, Daniel G; Ha, Gavin Nature communications 36463275 2022 Dec 03
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Clonal Hematopoiesis and Its Impact on Human Health. Ahmad, Herra; Jahn, Nikolaus; Jaiswal, Siddhartha Annual review of medicine 36450282 2023 Jan 27
Genetically encoded tools for in vivo G-protein-coupled receptor agonist detection at cellular resolution. Kroning, Kayla E; Wang, Wenjing Clinical and translational medicine 36446954 2022 Dec
Functional Metagenomics to Study Antibiotic Resistance. Mahmud, Bejan; Boolchandani, Manish; Patel, Sanket; Dantas, Gautam Methods in molecular biology (Clifton, N.J.) 36445596 2023
Inflammatory Bowel Disease-Associated Gut Commensals Degrade Components of the Extracellular Matrix. Porras, Ana Maria; Zhou, Hao; Shi, Qiaojuan; Xiao, Xieyue; JRI Live Cell Bank; Longman, Randy; Brito, Ilana Lauren mBio 36445085 2022 Dec 20
A large-scale neural network training framework for generalized estimation of single-trial population dynamics. Keshtkaran, Mohammad Reza; Sedler, Andrew R; Chowdhury, Raeed H; Tandon, Raghav; Basrai, Diya; Nguyen, Sarah L; Sohn, Hansem; Jazayeri, Mehrdad; Miller, Lee E; Pandarinath, Chethan Nature methods 36443486 2022 Dec
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Accessing the human trophoblast stem cell state from pluripotent and somatic cells. Karvas, Rowan M; David, Laurent; Theunissen, Thorold W Cellular and molecular life sciences : CMLS 36434136 2022 Nov 25
Intestinal enteroendocrine cells rely on ryanodine and IP3 calcium store receptors for mechanotransduction. Knutson, Kaitlyn R; Whiteman, Sara T; Alcaino, Constanza; Mercado-Perez, Arnaldo; Finholm, Isabelle; Serlin, Hannah K; Bellampalli, Shreya S; Linden, David R; Farrugia, Gianrico; Beyder, Arthur The Journal of physiology 36428286 2023 Jan
Dual Immunostimulatory Pathway Agonism through a Synthetic Nanocarrier Triggers Robust Anti-Tumor Immunity in Murine Glioblastoma. Lugani, Sophie; Halabi, Elias A; Oh, Juhyun; Kohler, Rainer H; Peterson, Hannah M; Breakefield, Xandra O; Chiocca, E Antonio A; Miller, Miles A; Garris, Christopher S; Weissleder, Ralph Advanced materials (Deerfield Beach, Fla.) 36427266 2023 Feb
Metrics of high cofluctuation and entropy to describe control of cardiac function in the stellate ganglion. Gurel, Nil Z; Sudarshan, Koustubh B; Hadaya, Joseph; Karavos, Alex; Temma, Taro; Hori, Yuichi; Armour, J Andrew; Kember, Guy; Ajijola, Olujimi A eLife 36426848 2022 Nov 25
A mixture-density-based tandem optimization network for on-demand inverse design of thin-film high reflectors. Unni, Rohit; Yao, Kan; Han, Xizewen; Zhou, Mingyuan; Zheng, Yuebing Nanophotonics 36425324 2021 Nov
Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex. Liu, Shuang; Won, Hyejung; Clarke, Declan; Matoba, Nana; Khullar, Saniya; Mu, Yudi; Wang, Daifeng; Gerstein, Mark Genome medicine 36424644 2022 Nov 24
The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors. Joubert, Pierre M; Krasileva, Ksenia V BMC biology 36424609 2022 Nov 23
Novel recombinases for large DNA insertions. Lampe, George D; Sternberg, Samuel H Nature biotechnology 36424492 2023 Apr
A deep learning framework for inference of single-trial neural population dynamics from calcium imaging with subframe temporal resolution. Zhu, Feng; Grier, Harrison A; Tandon, Raghav; Cai, Changjia; Agarwal, Anjali; Giovannucci, Andrea; Kaufman, Matthew T; Pandarinath, Chethan Nature neuroscience 36424431 2022 Dec
Efficient chemoenzymatic synthesis of α-aryl aldehydes as intermediates in C-C bond forming biocatalytic cascades. Meza, Anthony; Campbell, Meghan E; Zmich, Anna; Thein, Sierra A; Grieger, Abbigail M; McGill, Matthew J; Willoughby, Patrick H; Buller, Andrew R ACS catalysis 36420479 2022 Sep 02
Co-targeting KRAS G12C and EGFR reduces both mutant and wild-type RAS-GTP. McFall, Thomas; Trogdon, Michael; Guizar, Anita C; Langenheim, John F; Sisk-Hackworth, Laura; Stites, Edward C NPJ precision oncology 36418474 2022 Nov 23
Probing the biophysical constraints of SARS-CoV-2 spike N-terminal domain using deep mutational scanning. Ouyang, Wenhao O; Tan, Timothy J C; Lei, Ruipeng; Song, Ge; Kieffer, Collin; Andrabi, Raiees; Matreyek, Kenneth A; Wu, Nicholas C Science advances 36417523 2022 Nov 25
A proteome-wide map of chaperone-assisted protein refolding in a cytosol-like milieu. To, Philip; Xia, Yingzi; Lee, Sea On; Devlin, Taylor; Fleming, Karen G; Fried, Stephen D Proceedings of the National Academy of Sciences of the United States of America 36417429 2022 Nov 29
Malignant peripheral nerve sheath tumor in children: A clinicopathologic and molecular study with parallels to the adult counterpart. Agaram, Narasimhan P; Wexler, Leonard H; Chi, Ping; Antonescu, Cristina R Genes, chromosomes & cancer 36414547 2023 Mar
A potent and broad neutralization of SARS-CoV-2 variants of concern by DARPins. Chonira, Vikas; Kwon, Young D; Gorman, Jason; Case, James Brett; Ku, Zhiqiang; Simeon, Rudo; Casner, Ryan G; Harris, Darcy R; Olia, Adam S; Stephens, Tyler; Shapiro, Lawrence; Bender, Michael F; Boyd, Hannah; Teng, I-Ting; Tsybovsky, Yaroslav; Krammer, Florian; Zhang, Ningyan; Diamond, Michael S; Kwong, Peter D; An, Zhiqiang; Chen, Zhilei Nature chemical biology 36411391 2023 Mar
Large-Scale CRISPRi and Transcriptomics of Staphylococcus epidermidis Identify Genetic Factors Implicated in Lifestyle Versatility. Spoto, Michelle; Riera Puma, Johanna P; Fleming, Elizabeth; Guan, Changhui; Ondouah Nzutchi, Yvette; Kim, Dean; Oh, Julia mBio 36409086 2022 Dec 20
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Large-scale genetic screens identify BET-1 as a cytoskeleton regulator promoting actin function and life span. Garcia, Gilberto; Bar-Ziv, Raz; Averbukh, Maxim; Dasgupta, Nirmalya; Dutta, Naibedya; Zhang, Hanlin; Fan, Wudi; Moaddeli, Darius; Tsui, C Kimberly; Castro Torres, Toni; Alcala, Athena; Moehle, Erica A; Hoang, Sally; Shalem, Ophir; Adams, Peter D; Thorwald Aging cell 36404134 2022 Nov 20
Supramolecular Loading of DNA Hydrogels with Dye-Drug Conjugates for Real-Time Photoacoustic Monitoring of Chemotherapy. Borum, Raina M; Moore, Colman; Mantri, Yash; Xu, Ming; Jokerst, Jesse V Advanced science (Weinheim, Baden-Wurttemberg, Germany) 36403233 2022 Nov 20
Nucleosome patterns in circulating tumor DNA reveal transcriptional regulation of advanced prostate cancer phenotypes. De Sarkar, Navonil; Patton, Robert D; Doebley, Anna-Lisa; Hanratty, Brian; Adil, Mohamed; Kreitzman, Adam J; Sarthy, Jay F; Ko, Minjeong; Brahma, Sandipan; Meers, Michael P; Janssens, Derek H; Ang, Lisa S; Coleman, Ilsa M; Bose, Arnab; Dumpit, Ruth F; Lucas, Jared M; Nunez, Talina A; Nguyen, Holly M; McClure, Heather M; Pritchard, Colin C; Schweizer, Michael T; Morrissey, Colm; Choudhury, Atish D; Baca, Sylvan C; Berchuck, Jacob E; Freedman, Matthew L; Ahmad, Kami; Haffner, Michael C; Montgomery, R Bruce; Corey, Eva; Henikoff, Steven; Nelson, Peter S; Ha, Gavin Cancer discovery 36399432 2022 Nov 18
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Handling Diapause Embryos of the African Turquoise Killifish Nothobranchius furzeri. Hu, Chi-Kuo Cold Spring Harbor protocols 36283839 2023 Feb 01
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LANCE: a Label-Free Live Apoptotic and Necrotic Cell Explorer Using Convolutional Neural Network Image Analysis. Hartnett, Emma B; Zhou, Mengli; Gong, Yi-Nan; Chen, Yu-Chih Analytical chemistry 36251981 2022 Nov 01
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer. Sjöström, Martin; Zhao, Shuang G; Levy, Samuel; Zhang, Meng; Ning, Yuhong; Shrestha, Raunak; Lundberg, Arian; Herberts, Cameron; Foye, Adam; Aggarwal, Rahul; Hua, Junjie T; Li, Haolong; Bergamaschi, Anna; Maurice-Dror, Corinne; Maheshwari, Ashutosh; Chen, Cancer research 36251389 2022 11 02
Color is necessary for face discrimination in the Northern paper wasp, Polistes fuscatus. Jernigan, Christopher M; Stafstrom, Jay A; Zaba, Natalie C; Vogt, Caleb C; Sheehan, Michael J Animal cognition 36245014 2023 Mar
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Strains to go: interactions of the skin microbiome beyond its species. Caldwell, Ryan; Zhou, Wei; Oh, Julia Current opinion in microbiology 36242896 2022 Oct 12
Quantitative epileptiform burden and electroencephalography background features predict post-traumatic epilepsy. Chen, Yilun; Li, Songlu; Ge, Wendong; Jing, Jin; Chen, Hsin Yi; Doherty, Daniel; Herman, Alison; Kaleem, Safa; Ding, Kan; Osman, Gamaleldin; Swisher, Christa B; Smith, Christine; Maciel, Carolina B; Alkhachroum, Ayham; Lee, Jong Woo; Dhakar, Monica B; Gilmore, Emily J; Sivaraju, Adithya; Hirsch, Lawrence J; Omay, Sacit B; Blumenfeld, Hal; Sheth, Kevin N; Struck, Aaron F; Edlow, Brian L; Westover, M Brandon; Kim, Jennifer A Journal of neurology, neurosurgery, and psychiatry 36241423 2023 Mar
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Editorial: C. elegans host-microbiome interactions: From medical to ecological and evolutionary model. Herman, Michael A; Irazoqui, Javier E; Samuel, Buck S; Vega, Nic Frontiers in cellular and infection microbiology 36225234 2022
'I had a bigger cancer risk than I thought…': The experience of receiving personalized risk information as part of a skin cancer prevention intervention in the college setting. Brady, Hannah L; Hamilton, Jada G; Kaphingst, Kimberly A; Jensen, Jakob D; Kohlmann, Wendy; Parsons, Bridget G; Lillie, Helen M; Wankier, Ali P; Smith, Heather J; Grossman, Douglas; Hay, Jennifer L; Wu, Yelena P Health expectations : an international journal of public participation in health care and health policy 36225123 2022 Dec
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Balancing Trade-Offs Imposed by Growth Media and Mass Spectrometry for Bacterial Exometabolomics. Donnelly, Ann E; Narayanan, Nithya; Birer-Williams, Caroline M C; DeWolfe, Travis J; Chu, Rosalie K; Anderton, Christopher R; Wright, Erik S Applied and environmental microbiology 36197102 2022 Oct 26
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A (Controlled) Spill of IL2 for Localized Treatment of Mesothelioma. Palanki, Rohan; Swingle, Kelsey L; Mitchell, Michael J Clinical cancer research : an official journal of the American Association for Cancer Research 36190329 2022 Dec 01
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Programming the Self-Organization of Endothelial Cells into Perfusable Microvasculature. Cabral, Katelyn A; Srivastava, Vasudha; Graham, Austin J; Coyle, Maxwell C; Stashko, Connor; Weaver, Valerie; Gartner, Zev J Tissue engineering. Part A 36181350 2023 Feb
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Bioorthogonal Click and Release: A General, Rapid, Chemically Revertible Bioconjugation Strategy Employing Enamine N-oxides. Kang, Dahye; Lee, Sanghyeon; Kim, Justin Chem 36176744 2022 Aug 11
Improved mammalian retromer cryo-EM structures reveal a new assembly interface. Kendall, Amy K; Chandra, Mintu; Xie, Boyang; Wan, William; Jackson, Lauren P The Journal of biological chemistry 36174678 2022 Sep 26
Bronchus-associated macrophages efficiently capture and present soluble inhaled antigens and are capable of local Th2 cell activation. Tang, Xin-Zi; Kreuk, Lieselotte S M; Cho, Cynthia; Metzger, Ross J; Allen, Christopher D C eLife 36173678 2022 Sep 29
Motor cortical influence relies on task-specific activity covariation. Warriner, Claire L; Fageiry, Samaher; Saxena, Shreya; Costa, Rui M; Miri, Andrew Cell reports 36170841 2022 Sep 27
De novo sphingolipid biosynthesis necessitates detoxification in cancer cells. Spears, Meghan E; Lee, Namgyu; Hwang, Sunyoung; Park, Sung Jin; Carlisle, Anne E; Li, Rui; Doshi, Mihir B; Armando, Aaron M; Gao, Jenny; Simin, Karl; Zhu, Lihua Julie; Greer, Paul L; Quehenberger, Oswald; Torres, Eduardo M; Kim, Dohoon Cell reports 36170811 2022 Sep 27
Constructing 2D maps of human spinal cord activity and isolating the functional midline with high-density microelectrode arrays. Russman, Samantha M; Cleary, Daniel R; Tchoe, Youngbin; Bourhis, Andrew M; Stedelin, Brittany; Martin, Joel; Brown, Erik C; Zhang, Xinlian; Kawamoto, Aaron; Ryu, Won Hyung A; Raslan, Ahmed M; Ciacci, Joseph D; Dayeh, Shadi A Science translational medicine 36170445 2022 Sep 28
Correcting motion induced fluorescence artifacts in two-channel neural imaging. Creamer, Matthew S; Chen, Kevin S; Leifer, Andrew M; Pillow, Jonathan W PLoS computational biology 36170268 2022 09
A Single Nucleotide Polymorphism in SH2B3/LNK Promotes Hypertension Development and Renal Damage. Alexander, Matthew R; Hank, Samuel; Dale, Bethany L; Himmel, Lauren; Zhong, Xue; Smart, Charles D; Fehrenbach, Daniel J; Chen, Yuhan; Prabakaran, Nitin; Tirado, Brian; Centrella, Megan; Ao, Mingfang; Du, Liping; Shyr, Yu; Levy, Daniel; Madhur, Meena S Circulation research 36169218 2022 Oct 14
Advancements in G protein-coupled receptor biosensors to study GPCR-G protein coupling. Olsen, Reid H J; English, Justin G British journal of pharmacology 36166832 2023 Jun
Obesity is associated with altered tumor metabolism in metastatic melanoma. Hahn, Andrew W; Menk, Ashley V; Rivadeneira, Dayana B; Augustin, Ryan C; Xu, Mingchu; Li, Jun; Wu, Xiaogang; Mishra, Aditya K; Gide, Tuba N; Quek, Camelia; Zang, Yan; Spencer, Christine N; Menzies, Alexander M; Daniel, Carrie R; Hudgens, Courtney W; Nowic Clinical cancer research : an official journal of the American Association for Cancer Research 36166093 2022 Sep 27
Minimizing Molecular Misidentification in Imaging Low-Abundance Protein Interactions Using Spectroscopic Single-Molecule Localization Microscopy. Zhang, Yang; Wang, Gaoxiang; Huang, Peizhou; Sun, Edison; Kweon, Junghun; Li, Qianru; Zhe, Ji; Ying, Leslie L; Zhang, Hao F Analytical chemistry 36165784 2022 Oct 11
Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes. Gao, Teng; Soldatov, Ruslan; Sarkar, Hirak; Kurkiewicz, Adam; Biederstedt, Evan; Loh, Po-Ru; Kharchenko, Peter V Nature biotechnology 36163550 2023 Mar
Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements. Luquette, Lovelace J; Miller, Michael B; Zhou, Zinan; Bohrson, Craig L; Zhao, Yifan; Jin, Hu; Gulhan, Doga; Ganz, Javier; Bizzotto, Sara; Kirkham, Samantha; Hochepied, Tino; Libert, Claude; Galor, Alon; Kim, Junho; Lodato, Michael A; Garaycoechea, Juan I; Gawad, Charles; West, Jay; Walsh, Christopher A; Park, Peter J Nature genetics 36163278 2022 Oct
The material properties of a bacterial-derived biomolecular condensate tune biological function in natural and synthetic systems. Lasker, Keren; Boeynaems, Steven; Lam, Vinson; Scholl, Daniel; Stainton, Emma; Briner, Adam; Jacquemyn, Maarten; Daelemans, Dirk; Deniz, Ashok; Villa, Elizabeth; Holehouse, Alex S; Gitler, Aaron D; Shapiro, Lucy Nature communications 36163138 2022 Sep 26
Differential requirements for mitochondrial electron transport chain components in the adult murine liver. Lesner, Nicholas P; Wang, Xun; Chen, Zhenkang; Frank, Anderson; Menezes, Cameron J; House, Sara; Shelton, Spencer D; Lemoff, Andrew; McFadden, David G; Wansapura, Janaka; DeBerardinis, Ralph J; Mishra, Prashant eLife 36154948 2022 Sep 26
Energetics, kinetics, and pathways of SNARE assembly in membrane fusion. Zhang, Yongli; Ma, Lu; Bao, Huan Critical reviews in biochemistry and molecular biology 36151854 2022 Aug
A kinetic-optimized CoChR variant with enhanced high-frequency spiking fidelity. Bi, Xiaoke; Beck, Connor; Gong, Yiyang Biophysical journal 36151721 2022 11 01
Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation. Nam, Anna S; Dusaj, Neville; Izzo, Franco; Murali, Rekha; Myers, Robert M; Mouhieddine, Tarek H; Sotelo, Jesus; Benbarche, Salima; Waarts, Michael; Gaiti, Federico; Tahri, Sabrin; Levine, Ross; Abdel-Wahab, Omar; Godley, Lucy A; Chaligne, Ronan; Ghobrial, Irene; Landau, Dan A Nature genetics 36138229 2022 Oct
Engineering Enzyme Substrate Scope Complementarity for Promiscuous Cascade Synthesis of 1,2-Amino Alcohols. McDonald, Allwin D; Bruffy, Samantha K; Kasat, Aadhishre T; Buller, Andrew Richard Angewandte Chemie (International ed. in English) 36136093 2022 Sep 22
CLN3 is required for the clearance of glycerophosphodiesters from lysosomes. Laqtom, Nouf N; Dong, Wentao; Medoh, Uche N; Cangelosi, Andrew L; Dharamdasani, Vimisha; Chan, Sze Ham; Kunchok, Tenzin; Lewis, Caroline A; Heinze, Ivonne; Tang, Rachel; Grimm, Christian; Dang Do, An N; Porter, Forbes D; Ori, Alessandro; Sabatini, David M; Abu-Remaileh, Monther Nature 36131016 2022 Sep
Thymidine rescues ATR kinase inhibitor-induced deoxyuridine contamination in genomic DNA, cell death, and interferon-α/β expression. Sugitani, Norie; Vendetti, Frank P; Cipriano, Andrew J; Pandya, Pinakin; Deppas, Joshua J; Moiseeva, Tatiana N; Schamus-Haynes, Sandra; Wang, Yiyang; Palmer, Drake; Osmanbeyoglu, Hatice U; Bostwick, Anna; Snyder, Nathaniel W; Gong, Yi-Nan; Aird, Katherine Cell reports 36130512 2022 Sep 20
Genomic profiling for clinical decision making in myeloid neoplasms and acute leukemia. Duncavage, Eric J; Bagg, Adam; Hasserjian, Robert P; DiNardo, Courtney D; Godley, Lucy A; Iacobucci, Ilaria; Jaiswal, Siddhartha; Malcovati, Luca; Vannucchi, Alessandro M; Patel, Keyur P; Arber, Daniel A; Arcila, Maria E; Bejar, Rafael; Berliner, Nancy; Borowitz, Michael J; Branford, Susan; Brown, Anna L; Cargo, Catherine A; Döhner, Hartmut; Falini, Brunangelo; Garcia-Manero, Guillermo; Haferlach, Torsten; Hellström-Lindberg, Eva; Kim, Annette S; Klco, Jeffery M; Komrokji, Rami; Lee-Cheun Loh, Mignon; Loghavi, Sanam; Mullighan, Charles G; Ogawa, Seishi; Orazi, Attilio; Papaemmanuil, Elli; Reiter, Andreas; Ross, David M; Savona, Michael; Shimamura, Akiko; Skoda, Radek C; Solé, Francesc; Stone, Richard M; Tefferi, Ayalew; Walter, Matthew J; Wu, David; Ebert, Benjamin L; Cazzola, Mario Blood 36130297 2022 Nov 24
Organoid-on-a-chip model of human ARPKD reveals mechanosensing pathomechanisms for drug discovery. Hiratsuka, Ken; Miyoshi, Tomoya; Kroll, Katharina T; Gupta, Navin R; Valerius, M Todd; Ferrante, Thomas; Yamashita, Michifumi; Lewis, Jennifer A; Morizane, Ryuji Science advances 36129975 2022 09 23
Microbiome complexity shapes metabolism. Litichevskiy, Lev; Thaiss, Christoph A PLoS biology 36129892 2022 09
Randomization for the susceptibility effect of an infectious disease intervention. Eck, Daniel J; Morozova, Olga; Crawford, Forrest W Journal of mathematical biology 36127558 2022 Sep 20
A mitofusin 2/HIF1α axis sets a maturation checkpoint in regenerating skeletal muscle. Wang, Xun; Jia, Yuemeng; Zhao, Jiawei; Lesner, Nicholas P; Menezes, Cameron J; Shelton, Spencer D; Venigalla, Siva Sai Krishna; Xu, Jian; Cai, Chunyu; Mishra, Prashant The Journal of clinical investigation 36125902 2022 Dec 01
Developing skin cancer education materials for darker skin populations: crowdsourced design, message targeting, and acral lentiginous melanoma. Upshaw, Sean J; Jensen, Jakob D; Giorgi, Elizabeth A; Pokharel, Manusheela; Lillie, Helen M; Adams, Dallin R; John, Kevin K; Wu, Yelena P; Grossman, Douglas Journal of behavioral medicine 36125669 2022 Sep 20
Leveraging Nanomechanical Perturbations in Raman Spectro-Immunoassays to Design a Versatile Serum Biomarker Detection Platform. Zheng, Peng; Raj, Piyush; Wu, Lintong; Szabo, Miklos; Hanson, William A; Mizutani, Takayuki; Barman, Ishan Small (Weinheim an der Bergstrasse, Germany) 36117050 2022 Sep 18
Temporal gene expression patterns in the coral Euphyllia paradivisa reveal the complexity of biological clocks in the cnidarian-algal symbiosis. Rinsky, Mieka; Weizman, Eviatar; Ben-Asher, Hiba Waldman; Eyal, Gal; Zhu, Bokai; Levy, Oren Science advances 36112690 2022 Sep 16
Bioactive Fibronectin-III10-DNA Origami Nanofibers Promote Cell Adhesion and Spreading. Buchberger, Alex; Riker, Kyle; Bernal-Chanchavac, Julio; Narayanan, Raghu Pradeep; Simmons, Chad R; Fahmi, Nour Eddine; Freeman, Ronit; Stephanopoulos, Nicholas ACS applied bio materials 36108278 2022 Sep 15
Epithelial immunomodulation by aerosolized Toll-like receptor agonists prevents allergic inflammation in airway mucosa in mice. Goldblatt, David L; Valverde Ha, Gabriella; Wali, Shradha; Kulkarni, Vikram V; Longmire, Michael K; Jaramillo, Ana M; Chittuluru, Rosha P; Fouts, Adrienne; Martinez-Moczygemba, Margarita; Lei, Jonathan T; Huston, David P; Tuvim, Michael J; Dickey, Burton Frontiers in pharmacology 36105216 2022
Identification of a transcriptional signature found in multiple models of ASD and related disorders. Thudium, Samuel; Palozola, Katherine; L'Her, Éloïse; Korb, Erica Genome research 36104286 2022 Sep 14
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Conventional and Investigational Approaches Leveraging Clinical EEG for Prognosis in Acute Disorders of Consciousness. Curley, William H; Comanducci, Angela; Fecchio, Matteo Seminars in neurology 36100227 2022 06
Error-prone repair of stalled replication forks drives mutagenesis and loss of heterozygosity in haploinsufficient BRCA1 cells. Deshpande, Madhura; Paniza, Theodore; Jalloul, Nahed; Nanjangud, Gouri; Twarowski, Jerzy; Koren, Amnon; Zaninovic, Nikica; Zhan, Qiansheng; Chadalavada, Kalyani; Malkova, Anna; Khiabanian, Hossein; Madireddy, Advaitha; Rosenwaks, Zev; Gerhardt, Jeannine Molecular cell 36099913 2022 Oct 20
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Accurate Classification of Cardiomyopathy Diagnosis by Chromatin Accessibility. Bhattacharyya, Samadrita; Duan, Jialei; Vela, Ryan J; Bhakta, Minoti; Bajona, Pietro; Mammen, Pradeep P A; Hon, Gary C; Munshi, Nikhil V Circulation 36095061 2022 Sep 13
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Multi-curve fitting and tubulin-lattice signal removal for structure determination of large microtubule-based motors. Chai, Pengxin; Rao, Qinhui; Zhang, Kai Journal of structural biology 36089228 2022 Dec
Focus on your locus with a massively parallel reporter assay. McAfee, Jessica C; Bell, Jessica L; Krupa, Oleh; Matoba, Nana; Stein, Jason L; Won, Hyejung Journal of neurodevelopmental disorders 36085003 2022 Sep 09
High-performance multiplex drug-gated CAR circuits. Li, Hui-Shan; Wong, Nicole M; Tague, Elliot; Ngo, John T; Khalil, Ahmad S; Wong, Wilson W Cancer cell 36084652 2022 Nov 14
The role of cell-envelope synthesis for envelope growth and cytoplasmic density in Bacillus subtilis. Kitahara, Yuki; Oldewurtel, Enno R; Wilson, Sean; Sun, Yingjie; Altabe, Silvia; de Mendoza, Diego; Garner, Ethan C; van Teeffelen, Sven PNAS nexus 36082236 2022 Sep
A Subset of Secreted Proteins in Ascites Can Predict Platinum-Free Interval in Ovarian Cancer. Carroll, Molly J; Kaipio, Katja; Hynninen, Johanna; Carpen, Olli; Hautaniemi, Sampsa; Page, David; Kreeger, Pamela K Cancers 36077825 2022 Sep 01
Tailored visuals, implementation interventions, and sun safe behavior: A longitudinal message experiment. Jensen, Jakob D; Parsons, Bridget G; Nagelhout, Elizabeth S; Pokharel, Manusheela; Christy, Katheryn R; Ratcliff, Chelsea L; Grossman, Douglas; Haaland, Ben; Wu, Yelena P Health psychology : official journal of the Division of Health Psychology, American Psychological Association 36074598 2023 Jan
Microbial biofilms as living photoconductors due to ultrafast electron transfer in cytochrome OmcS nanowires. Neu, Jens; Shipps, Catharine C; Guberman-Pfeffer, Matthew J; Shen, Cong; Srikanth, Vishok; Spies, Jacob A; Kirchhofer, Nathan D; Yalcin, Sibel Ebru; Brudvig, Gary W; Batista, Victor S; Malvankar, Nikhil S Nature communications 36071037 2022 09 07
The spatial scale of somatostatin subnetworks increases from sensory to association cortex. Khoury, Christine F; Fala, Noelle G; Runyan, Caroline A Cell reports 36070697 2022 Sep 06
Decoding the Spermatogenesis Program: New Insights from Transcriptomic Analyses. Rabbani, Mashiat; Zheng, Xianing; Manske, Gabe L; Vargo, Alexander; Shami, Adrienne N; Li, Jun Z; Hammoud, Saher Sue Annual review of genetics 36070560 2022 Nov 30
Highly efficient generation of isogenic pluripotent stem cell models using prime editing. Li, Hanqin; Busquets, Oriol; Verma, Yogendra; Syed, Khaja Mohieddin; Kutnowski, Nitzan; Pangilinan, Gabriella R; Gilbert, Luke A; Bateup, Helen S; Rio, Donald C; Hockemeyer, Dirk; Soldner, Frank eLife 36069759 2022 Sep 07
Substrate multiplexed protein engineering facilitates promiscuous biocatalytic synthesis. McDonald, Allwin D; Higgins, Peyton M; Buller, Andrew R Nature communications 36068220 2022 09 06
Inferring cell communication using single-cell calcium spatiotemporal dynamics. Taghdiri, Nika; King, Kevin R STAR protocols 36065295 2022 09 16
A bead-based method for high-throughput mapping of the sequence- and force-dependence of T cell activation. Feng, Yinnian; Zhao, Xiang; White, Adam K; Garcia, K Christopher; Fordyce, Polly M Nature methods 36064771 2022 Sep 05
Structural host immune-microbiota interactions. Brito, Ilana Lauren; Kriegel, Martin Alexander Current opinion in structural biology 36063760 2022 Oct
Probing the Interaction Between Chromatin and Chromatin-Associated Complexes with Optical Tweezers. Leicher, Rachel; Liu, Shixin Methods in molecular biology (Clifton, N.J.) 36063325 2022
3D proximal tubule-on-chip model derived from kidney organoids with improved drug uptake. Aceves, Jeffrey O; Heja, Szilvia; Kobayashi, Kenichi; Robinson, Sanlin S; Miyoshi, Tomoya; Matsumoto, Takuya; Schäffers, Olivier J M; Morizane, Ryuji; Lewis, Jennifer A Scientific reports 36056134 2022 Sep 02
Adult fibroblasts use aggresomes only in distinct cell-states. Morrow, Christopher S; Arndt, Zachary P; Klosa, Payton C; Peng, Bo; Zewdie, Eden Y; Benayoun, Bérénice A; Moore, Darcie L Scientific reports 36056070 2022 Sep 02
Small-Molecule Inhibition of the Acyl-Lysine Reader ENL as a Strategy against Acute Myeloid Leukemia. Liu, Yiman; Li, Qinglan; Alikarami, Fatemeh; Barrett, Declan R; Mahdavi, Leila; Li, Hangpeng; Tang, Sylvia; Khan, Tanweer A; Michino, Mayako; Hill, Connor; Song, Lele; Yang, Lu; Li, Yuanyuan; Pokharel, Sheela Pangeni; Stamford, Andrew W; Liverton, Nigel; Renzetti, Louis M; Taylor, Simon; Watt, Gillian F; Ladduwahetty, Tammy; Kargman, Stacia; Meinke, Peter T; Foley, Michael A; Shi, Junwei; Li, Haitao; Carroll, Martin; Chen, Chun-Wei; Gardini, Alessandro; Maillard, Ivan; Huggins, David J; Bernt, Kathrin M; Wan, Liling Cancer discovery 36053276 2022 Nov 02
Characterization of defense responses against bacterial pathogens in duckweeds lacking EDS1. Baggs, Erin L; Tiersma, Meije B; Abramson, Brad W; Michael, Todd P; Krasileva, Ksenia V The New phytologist 36052715 2022 Sep 02
Somatic mutations in single human cardiomyocytes reveal age-associated DNA damage and widespread oxidative genotoxicity. Choudhury, Sangita; Huang, August Yue; Kim, Junho; Zhou, Zinan; Morillo, Katherine; Maury, Eduardo A; Tsai, Jessica W; Miller, Michael B; Lodato, Michael A; Araten, Sarah; Hilal, Nazia; Lee, Eunjung Alice; Chen, Ming Hui; Walsh, Christopher A Nature aging 36051457 2022 Aug
Optical coherence tomography holds promise to transform the diagnostic anatomic pathology gross evaluation process. Mojahed, Diana; Applegate, Matthew; Guo, Hua; Taback, Bret; Ha, Richard; Hibshoosh, Hanina; Hendon, Christine Journal of biomedical optics 36050827 2022 Sep
Tonic activity in lateral habenula neurons acts as a neutral valence brake on reward-seeking behavior. Post, Ryan J; Bulkin, David A; Ebitz, R Becket; Lee, Vladlena; Han, Kasey; Warden, Melissa R Current biology : CB 36049479 2022 Oct 24
Live functional assays reveal longitudinal maturation of transepithelial transport in kidney organoids. Rizki-Safitri, Astia; Gupta, Navin; Hiratsuka, Ken; Kobayashi, Kenichi; Zhang, Chengcheng; Ida, Kazumi; Satlin, Lisa M; Morizane, Ryuji Frontiers in cell and developmental biology 36046340 2022
The role of somatosensory innervation of adipose tissues. Wang, Yu; Leung, Verina H; Zhang, Yunxiao; Nudell, Victoria S; Loud, Meaghan; Servin-Vences, M Rocio; Yang, Dong; Wang, Kristina; Moya-Garzon, Maria Dolores; Li, Veronica L; Long, Jonathan Z; Patapoutian, Ardem; Ye, Li Nature 36045288 2022 09
A TAle of Two Pathways: Tail-Anchored Protein Insertion at the Endoplasmic Reticulum. Guna, Alina; Hazu, Masami; Pinton Tomaleri, Giovani; Voorhees, Rebecca M Cold Spring Harbor perspectives in biology 36041783 2023 Mar 01
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Using a polygenic score in a family design to understand genetic influences on musicality. Wesseldijk, Laura W; Abdellaoui, Abdel; Gordon, Reyna L; 23andMe Research Team; Ullén, Fredrik; Mosing, Miriam A Scientific reports 36038631 2022 Aug 29
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Dynamin is primed at endocytic sites for ultrafast endocytosis. Imoto, Yuuta; Raychaudhuri, Sumana; Ma, Ye; Fenske, Pascal; Sandoval, Eduardo; Itoh, Kie; Blumrich, Eva-Maria; Matsubayashi, Hideaki T; Mamer, Lauren; Zarebidaki, Fereshteh; Söhl-Kielczynski, Berit; Trimbuch, Thorsten; Nayak, Shraddha; Iwasa, Janet H; Liu Neuron 35809574 2022 09 07
Recurrent somatic mutations as predictors of immunotherapy response. Gajic, Zoran Z; Deshpande, Aditya; Legut, Mateusz; Imieliński, Marcin; Sanjana, Neville E Nature communications 35803911 2022 Jul 08
Enhancing untargeted metabolomics using metadata-based source annotation. Gauglitz, Julia M; West, Kiana A; Bittremieux, Wout; Williams, Candace L; Weldon, Kelly C; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M; Brown, Elizabeth; Sikora, Nicole C; Jarmusch, Alan K; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J; Dorrestein, Kathleen; Shaffer, Justin P; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H; Piotrowski, Paulina K; Servetas, Stephanie L; Da Silva, Sandra M; Jones, Christina M; Lin, Nancy J; Lippa, Katrice A; Jackson, Scott A; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S; Kalashnikova, Tatyana I; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M; Kim, Jae H; Rhee, Kyung E; Beauchamp-Walters, Julia; Wright Jr, Kenneth P; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F; Boland, Brigid S; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D; Dutton, Rachel J; Knight, Rob; Dorrestein, Pieter C Nature biotechnology 35798960 2022 Dec
A Social Media‒Based Public Health Campaign Encouraging COVID-19 Vaccination Across the United States. Hunt, Isabella de Vere; Dunn, Tamara; Mahoney, Megan; Chen, Michael; Nava, Vanessa; Linos, Eleni American journal of public health 35797502 2022 09
Ligand-induced transmembrane conformational coupling in monomeric EGFR. Srinivasan, Shwetha; Regmi, Raju; Lin, Xingcheng; Dreyer, Courtney A; Chen, Xuyan; Quinn, Steven D; He, Wei; Coleman, Matthew A; Carraway 3rd, Kermit L; Zhang, Bin; Schlau-Cohen, Gabriela S Nature communications 35794108 2022 07 06
Neural network organization for courtship-song feature detection in Drosophila. Baker, Christa A; McKellar, Claire; Pang, Rich; Nern, Aljoscha; Dorkenwald, Sven; Pacheco, Diego A; Eckstein, Nils; Funke, Jan; Dickson, Barry J; Murthy, Mala Current biology : CB 35793679 2022 08 08
Tunable Strong Coupling in Transition Metal Dichalcogenide Nanowires. Li, Jingang; Yao, Kan; Huang, Yun; Fang, Jie; Kollipara, Pavana Siddhartha; Fan, Donglei Emma; Zheng, Yuebing Advanced materials (Deerfield Beach, Fla.) 35793202 2022 Jul 06
PRC2 Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1 Targeted Therapy via Enhanced Viral Mimicry. Patel, Amish J; Warda, Sarah; Maag, Jesper L V; Misra, Rohan; Miranda-Roman, Miguel A; Pachai, Mohini R; Lee, Cindy J; Li, Dan; Wang, Naitao; Bayshtok, Gabriella; Fishinevich, Eve; Meng, Yinuo; Wong, Elissa W P; Yan, Juan; Giff, Emily; Pappalardi, Melissa B; McCabe, Michael T; Fletcher, Jonathan A; Rudin, Charles M; Chandarlapaty, Sarat; Scandura, Joseph M; Koche, Richard P; Glass, Jacob L; Antonescu, Cristina R; Zheng, Deyou; Chen, Yu; Chi, Ping Cancer discovery 35789380 2022 Jul 05
Gut instincts in neuroimmunity from the eighteenth to twenty-first centuries. Nguyen, Mytien; Palm, Noah W Seminars in immunopathology 35786740 2022 09
Therapeutic Response of miR-145 Micelles on Patient-Derived Vascular Smooth Muscle Cells. Patel, Neil; Chin, Deborah D; Magee, Gregory A; Chung, Eun Ji Frontiers in digital health 35783597 2022
Design to Implementation Study for Development and Patient Validation of Paper-Based Toehold Switch Diagnostics. Jaenes, Katariina; Ribeiro da Silva, Severino Jefferson; Vigar, Justin R J; Wu, Kaiyue; Norouzi, Masoud; Bayat, Pouriya; Karlikow, Margot; Cicek, Seray; Guo, Yuxiu; Green, Alexander A; Pena, Lindomar; Pardee, Keith Journal of visualized experiments : JoVE 35781278 2022 06 17
Bringing Vibrational Imaging to Chemical Biology with Molecular Probes. Du, Jiajun; Wang, Haomin; Wei, Lu ACS chemical biology 35772040 2022 Jul 15
Social evolution of shared biofilm matrix components. Tai, Jung-Shen B; Mukherjee, Saikat; Nero, Thomas; Olson, Rich; Tithof, Jeffrey; Nadell, Carey D; Yan, Jing Proceedings of the National Academy of Sciences of the United States of America 35771939 2022 Jul 05
Coordinated Transcriptional and Catabolic Programs Support Iron-Dependent Adaptation to RAS-MAPK Pathway Inhibition in Pancreatic Cancer. Ravichandran, Mirunalini; Hu, Jingjie; Cai, Charles; Ward, Nathan P; Venida, Anthony; Foakes, Callum; Kuljanin, Miljan; Yang, Annan; Hennessey, Connor J; Yang, Yang; Desousa, Brandon R; Rademaker, Gilles; Staes, Annelot A L; Cakir, Zeynep; Jain, Isha H; A Cancer discovery 35771494 2022 Sep 02
A neurodevelopmental disorder caused by a novel de novo SVA insertion in exon 13 of the SRCAP gene. Zhao, Boxun; Madden, Jill A; Lin, Jasmine; Berry, Gerard T; Wojcik, Monica H; Zhao, Xuefang; Brand, Harrison; Talkowski, Michael; Lee, Eunjung Alice; Agrawal, Pankaj B European journal of human genetics : EJHG 35768521 2022 09
Investigating water/oil interfaces with opto-thermophoresis. Kim, Youngsun; Ding, Hongru; Zheng, Yuebing Nature communications 35768421 2022 Jun 29
Profiling of mature-stage human breast milk cells identifies six unique lactocyte subpopulations. Gleeson, John P; Chaudhary, Namit; Fein, Katherine C; Doerfler, Rose; Hredzak-Showalter, Patricia; Whitehead, Kathryn A Science advances 35767604 2022 07
Convergence and Divergence of Rare Genetic Disorders on Brain Phenotypes: A Review. Raznahan, Armin; Won, Hyejung; Glahn, David C; Jacquemont, Sébastien JAMA psychiatry 35767289 2022 08 01
Visual Tailoring and Skin Cancer Prevention: Comparing Personalized, Stock, and Non-Ultraviolet Images. Pokharel, Manusheela; Jensen, Jakob D; John, Kevin K; Christy, Katheryn R; Taylor-Burton, Sophia; Upshaw, Sean Health communication 35765121 2022 Jun 28
Aberrant cortical development is driven by impaired cell cycle and translational control in a DDX3X syndrome model. Hoye, Mariah L; Calviello, Lorenzo; Poff, Abigail J; Ejimogu, Nna-Emeka; Newman, Carly R; Montgomery, Maya D; Ou, Jianhong; Floor, Stephen N; Silver, Debra L eLife 35762573 2022 06 28
How Microtubules Build the Spindle Branch by Branch. Travis, Sophie M; Mahon, Brian P; Petry, Sabine Annual review of cell and developmental biology 35759800 2022 Oct 06
Anti-membrane Antibodies Persist at Least One Year and Discriminate Between Past Coronavirus Disease 2019 Infection and Vaccination. Amjadi, Maya F; Adyniec, Ryan R; Gupta, Srishti; Bashar, S Janna; Mergaert, Aisha M; Braun, Katarina M; Moreno, Gage K; O'Connor, David H; Friedrich, Thomas C; Safdar, Nasia; McCoy, Sara S; Shelef, Miriam A The Journal of infectious diseases 35758987 2022 Nov 28
Correction to: "Optimal Individualized Decision Rules Using Instrumental Variable Methods". Qiu, Hongxiang; Carone, Marco; Sadikova, Ekaterina; Petukhova, Maria; Kessler, Ronald C; Luedtke, Alex Journal of the American Statistical Association 35756162 2021
Rational Design of Polyglutamic Acid Delivering an Optimized Combination of Drugs Targeting Mutated BRAF and MEK in Melanoma. Pisarevsky, Evgeni; Blau, Rachel; Epshtein, Yana; Ben-Shushan, Dikla; Eldar-Boock, Anat; Tiram, Galia; Koshrovski-Michael, Shani; Scomparin, Anna; Pozzi, Sabina; Krivitsky, Adva; Shenbach-Koltin, Gal; Yeini, Eilam; Fridrich, Lidar; White, Richard; Satchi-Fainaro, Ronit Advanced therapeutics 35754977 2020 Aug
Emergent properties as by-products of prebiotic evolution of aminoacylation ribozymes. Janzen, Evan; Shen, Yuning; Vázquez-Salazar, Alberto; Liu, Ziwei; Blanco, Celia; Kenchel, Josh; Chen, Irene A Nature communications 35752631 2022 06 25
Kidney organoids: a pioneering model for kidney diseases. Tekguc, Murat; Gaal, Ronald C VAN; Uzel, Sebastien G M; Gupta, Navin; Riella, Leonardo V; Lewis, Jennifer A; Morizane, Ryuji Translational research : the journal of laboratory and clinical medicine 35750295 2022 Jun 21
Genomic Profiling of Bronchoalveolar Lavage Fluid in Lung Cancer. Nair, Viswam S; Hui, Angela Bik-Yu; Chabon, Jacob J; Esfahani, Mohammad S; Stehr, Henning; Nabet, Barzin Y; Zhou, Li; Chaudhuri, Aadel A; Benson, Jalen; Ayers, Kelsey; Bedi, Harmeet; Ramsey, Meghan; Van Wert, Ryan; Antic, Sanja; Lui, Natalie; Backhus, Lea Cancer research 35748739 2022 Aug 16
Label-Free Morpho-Molecular Imaging for Studying the Differential Interaction of Black Phosphorus with Tumor Cells. Mussi, Valentina; Fasolino, Ines; Paria, Debadrita; De Simone, Sara; Caporali, Maria; Serrano-Ruiz, Manuel; Ambrosio, Luigi; Barman, Ishan; Raucci, Maria Grazia; Convertino, Annalisa Nanomaterials (Basel, Switzerland) 35745333 2022 Jun 10
Isotope tracing in health and disease. Dong, Wentao; Rawat, Eshaan S; Stephanopoulos, Gregory; Abu-Remaileh, Monther Current opinion in biotechnology 35738210 2022 08
A Subset of Oligodendrocyte Lineage Cells Interact With the Developing Dorsal Root Entry Zone During Its Genesis. Green, Lauren A; Gallant, Robert M; Brandt, Jacob P; Nichols, Ev L; Smith, Cody J Frontiers in cellular neuroscience 35734217 2022
NeuMapper: A scalable computational framework for multiscale exploration of the brain's dynamical organization. Geniesse, Caleb; Chowdhury, Samir; Saggar, Manish Network neuroscience (Cambridge, Mass.) 35733428 2022 Jun
Branched actin networks are organized for asymmetric force production during clathrin-mediated endocytosis in mammalian cells. Jin, Meiyan; Shirazinejad, Cyna; Wang, Bowen; Yan, Amy; Schöneberg, Johannes; Upadhyayula, Srigokul; Xu, Ke; Drubin, David G Nature communications 35732852 2022 06 22
Cross-attractor repertoire provides new perspective on structure-function relationship in the brain. Zhang, Mengsen; Sun, Yinming; Saggar, Manish NeuroImage 35732244 2022 10 01
Colorectal Cancer Risk Is Impacted by Sex and Type of Surgery After Bariatric Surgery. Hussan, Hisham; Akinyeye, Samuel; Mihaylova, Maria; McLaughlin, Eric; Chiang, ChienWei; Clinton, Steven K; Lieberman, David Obesity surgery 35731459 2022 Sep
Impact of Sexual Harassment and Social Support on Burnout in Physician Mothers. Linos, Elizabeth; Lasky-Fink, Jessica; Halley, Meghan; Sarkar, Urmimala; Mangurian, Christina; Sabry, Hala; Linos, Eleni; Jagsi, Reshma Journal of women's health (2002) 35730998 2022 07
Genome-wide mapping of somatic mutation rates uncovers drivers of cancer. Sherman, Maxwell A; Yaari, Adam U; Priebe, Oliver; Dietlein, Felix; Loh, Po-Ru; Berger, Bonnie Nature biotechnology 35726091 2022 Jun 20
An interpretable machine learning approach to identify mechanism of action of antibiotics. Mongia, Mihir; Guler, Mustafa; Mohimani, Hosein Scientific reports 35725893 2022 06 20
Uncovering a Cryptic Site of Malaria Pathogenesis: Models to Study Interactions Between Plasmodium and the Bone Marrow. Feldman, Tamar P; Egan, Elizabeth S Frontiers in cellular and infection microbiology 35719356 2022
Metabolic-scale gene activation screens identify SLCO2B1 as a heme transporter that enhances cellular iron availability. Unlu, Gokhan; Prizer, Benjamin; Erdal, Ranya; Yeh, Hsi-Wen; Bayraktar, Erol C; Birsoy, Kıvanç Molecular cell 35714613 2022 Aug 04
TET2-mutant clonal hematopoiesis and risk of gout. Agrawal, Mridul; Niroula, Abhishek; Cunin, Pierre; McConkey, Marie; Shkolnik, Veronica; Kim, Peter G; Wong, Waihay J; Weeks, Lachelle D; Lin, Amy E; Miller, Peter G; Gibson, Christopher J; Sekar, Aswin; Schaefer, Inga-Marie; Neuberg, Donna; Stone, Richard Blood 35714308 2022 Sep 08
The embryonic zebrafish brain is seeded by a lymphatic-dependent population of mrc1+ microglia precursors. Green, Lauren A; O'Dea, Michael R; Hoover, Camden A; DeSantis, Dana F; Smith, Cody J Nature neuroscience 35710983 2022 Jul
Liver-derived cell lines from cavefish Astyanax mexicanus as an in vitro model for studying metabolic adaptation. Krishnan, Jaya; Wang, Yan; Kenzior, Olga; Hassan, Huzaifa; Olsen, Luke; Tsuchiya, Dai; Kenzior, Alexander; Peuß, Robert; Xiong, Shaolei; Wang, Yongfu; Zhao, Chongbei; Rohner, Nicolas Scientific reports 35710938 2022 06 16
Genome-wide association study of musical beat synchronization demonstrates high polygenicity. Niarchou, Maria; Gustavson, Daniel E; Sathirapongsasuti, J Fah; Anglada-Tort, Manuel; Eising, Else; Bell, Eamonn; McArthur, Evonne; Straub, Peter; 23andMe Research Team; McAuley, J Devin; Capra, John A; Ullén, Fredrik; Creanza, Nicole; Mosing, Miriam A; H Nature human behaviour 35710621 2022 Sep
Structural basis of nucleosome retention during transcription elongation. Filipovski, Martin; Soffers, Jelly H M; Vos, Seychelle M; Farnung, Lucas Science (New York, N.Y.) 35709268 2022 06 17
Interleukin-17 governs hypoxic adaptation of injured epithelium. Konieczny, Piotr; Xing, Yue; Sidhu, Ikjot; Subudhi, Ipsita; Mansfield, Kody P; Hsieh, Brandon; Biancur, Douglas E; Larsen, Samantha B; Cammer, Michael; Li, Dongqing; Landén, Ning Xu; Loomis, Cynthia; Heguy, Adriana; Tikhonova, Anastasia N; Tsirigos, Aristotelis; Naik, Shruti Science (New York, N.Y.) 35709248 2022 07 08
Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets. Nacev, Benjamin A; Sanchez-Vega, Francisco; Smith, Shaleigh A; Antonescu, Cristina R; Rosenbaum, Evan; Shi, Hongyu; Tang, Cerise; Socci, Nicholas D; Rana, Satshil; Gularte-Mérida, Rodrigo; Zehir, Ahmet; Gounder, Mrinal M; Bowler, Timothy G; Luthra, Anisha; Jadeja, Bhumika; Okada, Azusa; Strong, Jonathan A; Stoller, Jake; Chan, Jason E; Chi, Ping; D'Angelo, Sandra P; Dickson, Mark A; Kelly, Ciara M; Keohan, Mary Louise; Movva, Sujana; Thornton, Katherine; Meyers, Paul A; Wexler, Leonard H; Slotkin, Emily K; Glade Bender, Julia L; Shukla, Neerav N; Hensley, Martee L; Healey, John H; La Quaglia, Michael P; Alektiar, Kaled M; Crago, Aimee M; Yoon, Sam S; Untch, Brian R; Chiang, Sarah; Agaram, Narasimhan P; Hameed, Meera R; Berger, Michael F; Solit, David B; Schultz, Nikolaus; Ladanyi, Marc; Singer, Samuel; Tap, William D Nature communications 35705560 2022 Jun 15
Clinical genomic profiling in the management of patients with soft tissue and bone sarcoma. Gounder, Mrinal M; Agaram, Narasimhan P; Trabucco, Sally E; Robinson, Victoria; Ferraro, Richard A; Millis, Sherri Z; Krishnan, Anita; Lee, Jessica; Attia, Steven; Abida, Wassim; Drilon, Alexander; Chi, Ping; Angelo, Sandra P D'; Dickson, Mark A; Keohan, Mary Lou; Kelly, Ciara M; Agulnik, Mark; Chawla, Sant P; Choy, Edwin; Chugh, Rashmi; Meyer, Christian F; Myer, Parvathi A; Moore, Jessica L; Okimoto, Ross A; Pollock, Raphael E; Ravi, Vinod; Singh, Arun S; Somaiah, Neeta; Wagner, Andrew J; Healey, John H; Frampton, Garrett M; Venstrom, Jeffrey M; Ross, Jeffrey S; Ladanyi, Marc; Singer, Samuel; Brennan, Murray F; Schwartz, Gary K; Lazar, Alexander J; Thomas, David M; Maki, Robert G; Tap, William D; Ali, Siraj M; Jin, Dexter X Nature communications 35705558 2022 Jun 15
Enhanced magnetic transduction of neuronal activity by nanofabricated inductors quantified via finite element analysis. Phillips, Jack; Glodowski, Mitchell; Gokhale, Yash; Dwyer, Matthew; Ashtiani, Alireza; Hai, Aviad Journal of neural engineering 35705065 2022 Jul 01
When the brain feels the bugs. Schneider, Kai Markus; Thaiss, Christoph A Immunity 35705000 2022 06 14
Universal optothermal micro/nanoscale rotors. Ding, Hongru; Kollipara, Pavana Siddhartha; Kim, Youngsun; Kotnala, Abhay; Li, Jingang; Chen, Zhihan; Zheng, Yuebing Science advances 35704582 2022 Jun 17
Targeted Nuclease Approaches for Mapping Native R-Loops. Wulfridge, Phillip; Yan, Qingqing; Sarma, Kavitha Methods in molecular biology (Clifton, N.J.) 35704205 2022
The metabolome of Mexican cavefish shows a convergent signature highlighting sugar, antioxidant, and Ageing-Related metabolites. Medley, J Kyle; Persons, Jenna; Biswas, Tathagata; Olsen, Luke; Peuß, Robert; Krishnan, Jaya; Xiong, Shaolei; Rohner, Nicolas eLife 35703366 2022 06 15
Impact of schizophrenia GWAS loci converge onto distinct pathways in cortical interneurons vs glutamatergic neurons during development. Liu, Dongxin; Zinski, Amy; Mishra, Akanksha; Noh, Haneul; Park, Gun-Hoo; Qin, Yiren; Olorife, Oshoname; Park, James M; Abani, Chiderah P; Park, Joy S; Fung, Janice; Sawaqed, Farah; Coyle, Joseph T; Stahl, Eli; Bendl, Jaroslav; Fullard, John F; Roussos, Panos; Zhang, Xiaolei; Stanton, Patric K; Yin, Changhong; Huang, Weihua; Kim, Hae-Young; Won, Hyejung; Cho, Jun-Hyeong; Chung, Sangmi Molecular psychiatry 35701597 2022 Jun 14
Narrative engineering of the liver. Lee, Inkyu S; Takebe, Takanori Current opinion in genetics & development 35700688 2022 08
Toward a Clearer Definition of Selection Bias When Estimating Causal Effects. Lu, Haidong; Cole, Stephen R; Howe, Chanelle J; Westreich, Daniel Epidemiology (Cambridge, Mass.) 35700187 2022 Sep 01
Essential functions of mosquito ecdysone importers in development and reproduction. Hun, Lewis V; Okamoto, Naoki; Imura, Eisuke; Maxson, Roilea; Bittar, Riyan; Yamanaka, Naoki Proceedings of the National Academy of Sciences of the United States of America 35696563 2022 06 21
Telomere-to-telomere human DNA replication timing profiles. Massey, Dashiell J; Koren, Amnon Scientific reports 35688856 2022 06 10
Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq. Replogle, Joseph M; Saunders, Reuben A; Pogson, Angela N; Hussmann, Jeffrey A; Lenail, Alexander; Guna, Alina; Mascibroda, Lauren; Wagner, Eric J; Adelman, Karen; Lithwick-Yanai, Gila; Iremadze, Nika; Oberstrass, Florian; Lipson, Doron; Bonnar, Jessica L; Jost, Marco; Norman, Thomas M; Weissman, Jonathan S Cell 35688146 2022 07 07
Metabolic Processing of Selenium-Based Bioisosteres of meso-Diaminopimelic Acid in Live Bacteria. Apostolos, Alexis J; Ocius, Karl L; Koyasseril-Yehiya, Thameez M; Santamaria, Carolina; Silva, José Rogério A; Lameira, Jerônimo; Alves, Cláudio N; Siegrist, M Sloan; Pires, Marcos M Biochemistry 35687722 2022 07 05
Closing the loop on crowdsourced science. Robson, James M; Green, Alexander A Proceedings of the National Academy of Sciences of the United States of America 35687665 2022 Jun 21
SMARCE1 deficiency generates a targetable mSWI/SNF dependency in clear cell meningioma. St Pierre, Roodolph; Collings, Clayton K; Samé Guerra, Daniel D; Widmer, Christian J; Bolonduro, Olubusayo; Mashtalir, Nazar; Sankar, Akshay; Liang, Yu; Bi, Wenya Linda; Gerkes, Erica H; Ramesh, Vijaya; Qi, Jun; Smith, Miriam J; Meredith, David M; Kadoch, Nature genetics 35681054 2022 06
An in vitro model of neuronal ensembles. Rabadan, M Angeles; De La Cruz, Estanislao Daniel; Rao, Sneha B; Chen, Yannan; Gong, Cheng; Crabtree, Gregg; Xu, Bin; Markx, Sander; Gogos, Joseph A; Yuste, Rafael; Tomer, Raju Nature communications 35680927 2022 06 09
Structural Basis for pH-gating of the K+ channel TWIK1 at the selectivity filter. Turney, Toby S; Li, Vivian; Brohawn, Stephen G Nature communications 35680900 2022 06 09
R-SPONDIN2+ mesenchymal cells form the bud tip progenitor niche during human lung development. Hein, Renee F C; Wu, Joshua H; Holloway, Emily M; Frum, Tristan; Conchola, Ansley S; Tsai, Yu-Hwai; Wu, Angeline; Fine, Alexis S; Miller, Alyssa J; Szenker-Ravi, Emmanuelle; Yan, Kelley S; Kuo, Calvin J; Glass, Ian; Reversade, Bruno; Spence, Jason R Developmental cell 35679862 2022 Jul 11
Potent and pan-neutralization of SARS-CoV-2 variants of concern by DARPins. Chonira, Vikas; Kwon, Young Do; Gorman, Jason; Case, James Brett; Ku, Zhiqiang; Simeon, Rudo; Casner, Ryan G; Harris, Darcy R; Olia, Adam S; Stephens, Tyler; Shapiro, Lawrence; Boyd, Hannah; Tsybovsky, Yaroslav; Krammer, Florian; Diamond, Michael S; Kwong, Peter D; An, Zhiqiang; Chen, Zhilei bioRxiv : the preprint server for biology 35677079 2022 May 31
Data Source Concordance for Infectious Disease Epidemiology. Majumder, Maimuna; Cusick, Marika Mae; Rose, Sherri medRxiv : the preprint server for health sciences 35677068 2022 Jun 03
Uncertainty in lung cancer stage for survival estimation via set-valued classification. Bergquist, Savannah; Brooks, Gabriel A; Landrum, Mary Beth; Keating, Nancy L; Rose, Sherri Statistics in medicine 35675972 2022 Aug 30
Heat Shock Protein 90's Mechanistic Role in Contact Hypersensitivity. Kim, Seong-Min; Studnitzer, Bradley; Esser-Kahn, Aaron Journal of immunology (Baltimore, Md. : 1950) 35675957 2022 06 15
Nanoengineered Ink for Designing 3D Printable Flexible Bioelectronics. Deo, Kaivalya A; Jaiswal, Manish K; Abasi, Sara; Lokhande, Giriraj; Bhunia, Sukanya; Nguyen, Thuy-Uyen; Namkoong, Myeong; Darvesh, Kamran; Guiseppi-Elie, Anthony; Tian, Limei; Gaharwar, Akhilesh K ACS nano 35675588 2022 Jun 28
Sociodemographic characteristics and HIV risk behaviors of native-born and displaced Syrian men and transgender women who have sex with men in Lebanon. Orr, Lilla V; Crawford, Forrest W; Khoshnood, Kaveh; Khouri, Danielle; Fouad, Fouad M; Seal, David W; Heimer, Robert AIDS and behavior 35672550 2022 Jun 07
Vasculopathy and Increased Vascular Congestion in Fatal COVID-19 and Acute Respiratory Distress Syndrome. Villalba, Julian A; Hilburn, Caroline F; Garlin, Michelle A; Elliott, Grant A; Li, Yijia; Kunitoki, Keiko; Poli, Sergio; Alba, George A; Madrigal, Emilio; Taso, Manuel; Price, Melissa C; Aviles, Alexis J; Araujo-Medina, Milagros; Bonanno, Liana; Boyraz, Baris; Champion, Samantha N; Harris, Cynthia K; Helland, Timothy L; Hutchison, Bailey; Jobbagy, Soma; Marshall, Michael S; Shepherd, Daniel J; Barth, Jaimie L; Hung, Yin P; Ly, Amy; Hariri, Lida P; Turbett, Sarah E; Pierce, Virginia M; Branda, John A; Rosenberg, Eric S; Mendez-Pena, Javier; Chebib, Ivan; Rosales, Ivy A; Smith, Rex N; Miller, Miles A; Rosas, Ivan O; Hardin, Charles C; Baden, Lindsey R; Medoff, Benjamin D; Colvin, Robert B; Little, Brent P; Stone, James R; Mino-Kenudson, Mari; Shih, Angela R American journal of respiratory and critical care medicine 35671465 2022 Oct 01
Functional coupling between TRPV4 channel and TMEM16F modulates human trophoblast fusion. Zhang, Yang; Liang, Pengfei; Yang, Liheng; Shan, Ke Zoe; Feng, Liping; Chen, Yong; Liedtke, Wolfgang; Coyne, Carolyn B; Yang, Huanghe eLife 35670667 2022 06 07
Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2. Fang, Zhenhao; Peng, Lei; Filler, Renata; Suzuki, Kazushi; McNamara, Andrew; Lin, Qianqian; Renauer, Paul A; Yang, Luojia; Menasche, Bridget; Sanchez, Angie; Ren, Ping; Xiong, Qiancheng; Strine, Madison; Clark, Paul; Lin, Chenxiang; Ko, Albert I; Grubaugh, Nathan D; Wilen, Craig B; Chen, Sidi Nature communications 35668119 2022 06 06
Bacillus subtilis biofilm matrix components target seed oil bodies to promote growth and anti-fungal resistance in melon. Berlanga-Clavero, M V; Molina-Santiago, C; Caraballo-Rodríguez, A M; Petras, D; Díaz-Martínez, L; Pérez-García, A; de Vicente, A; Carrión, V J; Dorrestein, P C; Romero, D Nature microbiology 35668112 2022 Jul
Cell-Free Tumor DNA Dominant Clone Allele Frequency Is Associated With Poor Outcomes in Advanced Biliary Cancers Treated With Platinum-Based Chemotherapy. Uson Junior, Pedro Luiz Serrano; Majeed, Umair; Yin, Jun; Botrus, Gehan; Sonbol, Mohamad Bassam; Ahn, Daniel H; Starr, Jason S; Jones, Jeremy C; Babiker, Hani; Inabinett, Samantha R; Wylie, Natasha; Boyle, Ashton W R; Bekaii-Saab, Tanios S; Gores, Gregory JCO precision oncology 35666960 2022 06
Optimization and Characterization of a Bone Culture Model to Study Prostate Cancer Bone Metastasis. Wu, Yi-Hsuan; Gugala, Zbigniew; Barry, Megan M; Shen, Yichao; Dasgupta, Subhamoy; Wang, Hai Molecular cancer therapeutics 35666809 2022 Aug 02
Design of Ribocomputing Devices for Complex Cellular Logic. McCutcheon, Griffin; Chaudhary, Soma; Hong, Seongho; Park, Dongwon; Kim, Jongmin; Green, Alexander A Methods in molecular biology (Clifton, N.J.) 35666439 2022
Design of RNA-Based Translational Repressors. Hong, Seongho; Park, Dongwon; Chaudhary, Soma; McCutcheon, Griffin; Green, Alexander A; Kim, Jongmin Methods in molecular biology (Clifton, N.J.) 35666438 2022
Stem Cell-Based Models for Studying the Effects of Cancer and Cancer Therapies on the Peripheral Nervous System. Richter, Mikayla N; Fattahi, Faranak Advanced biology 35666079 2022 Sep
Monitoring of irrigated lesion formation with single fiber based multispectral system using machine learning. Park, Soo Young; Singh-Moon, Rajinder P; Yang, Haiqiu; Hendon, Christine P Journal of biophotonics 35666015 2022 Jun 03
Transcriptome-wide Cas13 guide RNA design for model organisms and viral RNA pathogens. Guo, Xinyi; Rahman, Jahan A; Wessels, Hans-Hermann; Méndez-Mancilla, Alejandro; Haro, Daniel; Chen, Xinru; Sanjana, Neville E Cell genomics 35664829 2021 Oct 13
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Label-free Super-resolution Imaging Enabled by Vibrational Imaging of Swelled Tissue and Analysis. Miao, Kun; Lin, Li-En; Qian, Chenxi; Wei, Lu Journal of visualized experiments : JoVE 35661092 2022 05 17
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Universal protein misfolding intermediates can bypass the proteostasis network and remain soluble and less functional. Nissley, Daniel A; Jiang, Yang; Trovato, Fabio; Sitarik, Ian; Narayan, Karthik B; To, Philip; Xia, Yingzi; Fried, Stephen D; O'Brien, Edward P Nature communications 35654797 2022 06 02
Precision Phenotyping of Dilated Cardiomyopathy Using Multidimensional Data. Tayal, Upasana; Verdonschot, Job A J; Hazebroek, Mark R; Howard, James; Gregson, John; Newsome, Simon; Gulati, Ankur; Pua, Chee Jian; Halliday, Brian P; Lota, Amrit S; Buchan, Rachel J; Whiffin, Nicola; Kanapeckaite, Lina; Baruah, Resham; Jarman, Julian W E; O'Regan, Declan P; Barton, Paul J R; Ware, James S; Pennell, Dudley J; Adriaans, Bouke P; Bekkers, Sebastiaan C A M; Donovan, Jackie; Frenneaux, Michael; Cooper, Leslie T; Januzzi Jr, James L; Cleland, John G F; Cook, Stuart A; Deo, Rahul C; Heymans, Stephane R B; Prasad, Sanjay K Journal of the American College of Cardiology 35654493 2022 06 07
New Views of Old Proteins: Clarifying the Enigmatic Proteome. Burnum-Johnson, Kristin E; Conrads, Thomas P; Drake, Richard R; Herr, Amy E; Iyengar, Ravi; Kelly, Ryan T; Lundberg, Emma; MacCoss, Michael J; Naba, Alexandra; Nolan, Garry P; Pevzner, Pavel A; Rodland, Karin D; Sechi, Salvatore; Slavov, Nikolai; Spraggins, Jeffrey M; Van Eyk, Jennifer E; Vidal, Marc; Vogel, Christine; Walt, David R; Kelleher, Neil L Molecular & cellular proteomics : MCP 35654359 2022 Jul
Racial disparities in triple negative breast cancer: toward a causal architecture approach. Siegel, Scott D; Brooks, Madeline M; Lynch, Shannon M; Sims-Mourtada, Jennifer; Schug, Zachary T; Curriero, Frank C Breast cancer research : BCR 35650633 2022 06 01
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Cholinergic interneurons mediate cocaine extinction in male mice through plasticity across medium spiny neuron subtypes. Fleming, Weston; Lee, Junuk; Briones, Brandy A; Bolkan, Scott S; Witten, Ilana B Cell reports 35649378 2022 May 31
Intestinal inflammation alters the antigen-specific immune response to a skin commensal. Merana, Geil R; Dwyer, Laura R; Dhariwala, Miqdad O; Weckel, Antonin; Gonzalez, Jeanmarie R; Okoro, Joy N; Cohen, Jarish N; Tamaki, Courtney M; Han, Jungmin; Tasoff, Preston; Palacios-Calderon, Yasmin; Ha, Connie W Y; Lynch, Susan V; Segre, Julia A; Kong, Heidi H; Kattah, Michael G; Ma, Averil; Scharschmidt, Tiffany C Cell reports 35649365 2022 May 31
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CRISPRi chemical genetics and comparative genomics identify genes mediating drug potency in Mycobacterium tuberculosis. Li, Shuqi; Poulton, Nicholas C; Chang, Jesseon S; Azadian, Zachary A; DeJesus, Michael A; Ruecker, Nadine; Zimmerman, Matthew D; Eckartt, Kathryn A; Bosch, Barbara; Engelhart, Curtis A; Sullivan, Daniel F; Gengenbacher, Martin; Dartois, Véronique A; Schnappinger, Dirk; Rock, Jeremy M Nature microbiology 35637331 2022 06
Nano-bio interactions of 2D molybdenum disulfide. Roy, Shounak; Deo, Kaivalya A; Singh, Kanwar Abhay; Lee, Hung Pang; Jaiswal, Amit; Gaharwar, Akhilesh K Advanced drug delivery reviews 35636569 2022 08
Macrophage Cx43 Is Necessary for Fibroblast Cytosolic Calcium and Lung Fibrosis After Injury. Bhattacharyya, Aritra; Torre, Paola; Yadav, Preeti; Boostanpour, Kaveh; Chen, Tian Y; Tsukui, Tatsuya; Sheppard, Dean; Muramatsu, Rieko; Seed, Robert I; Nishimura, Stephen L; Jung, James B; Tang, Xin-Zi; Allen, Christopher D C; Bhattacharya, Mallar Frontiers in immunology 35634278 2022
Microgels Formed by Spontaneous Click Chemistries Utilizing Microfluidic Flow Focusing for Cargo Release in Response to Endogenous or Exogenous Stimuli. LeValley, Paige J; Parsons, Amanda L; Sutherland, Bryan P; Kiick, Kristi L; Oakey, John S; Kloxin, April M Pharmaceutics 35631649 2022 May 15
Exploration of Primary Care Clinician Attitudes and Cognitive Characteristics Associated With Prescribing Antibiotics for Asymptomatic Bacteriuria. Baghdadi, Jonathan D; Korenstein, Deborah; Pineles, Lisa; Scherer, Laura D; Lydecker, Alison D; Magder, Larry; Stevens, Deborah N; Morgan, Daniel J JAMA network open 35622364 2022 05 02
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Circularized fluorescent nanodiscs for probing protein-lipid interactions. Ren, Qian; Zhang, Shanwen; Bao, Huan Communications biology 35618817 2022 May 26
Coevolution of motor cortex and behavioral specializations associated with flight and echolocation in bats. Halley, Andrew C; Baldwin, Mary K L; Cooke, Dylan F; Englund, Mackenzie; Pineda, Carlos R; Schmid, Tobias; Yartsev, Michael M; Krubitzer, Leah Current biology : CB 35617952 2022 07 11
Longitudinal Molecular Profiling of Circulating Tumor Cells in Metastatic Renal Cell Carcinoma. Bootsma, Matthew; McKay, Rana R; Emamekhoo, Hamid; Bade, Rory M; Schehr, Jennifer L; Mannino, Matthew C; Singh, Anupama; Wolfe, Serena K; Schultz, Zachery D; Sperger, Jamie; Xie, Wanling; Signoretti, Sabina; Kyriakopoulos, Christos E; Kosoff, David; Abel, Edwin J; Helzer, Kyle T; Rydzewski, Nicholas; Bakhtiar, Hamza; Shi, Yue; Blitzer, Grace; Bassetti, Michael; Floberg, John; Yu, Menggang; Sethakorn, Nan; Sharifi, Marina; Harari, Paul M; Choueiri, Toni K; Lang, Joshua M; Zhao, Shuang G Journal of clinical oncology : official journal of the American Society of Clinical Oncology 35617646 2022 May 26
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Rapid Profiling of Tumor-Immune Interaction Using Acoustically Assembled Patient-Derived Cell Clusters. Ao, Zheng; Wu, Zhuhao; Cai, Hongwei; Hu, Liya; Li, Xiang; Kaurich, Connor; Chang, Jackson; Gu, Mingxia; Cheng, Liang; Lu, Xin; Guo, Feng Advanced science (Weinheim, Baden-Wurttemberg, Germany) 35611994 2022 08
Molecular analysis of a public cross-neutralizing antibody response to SARS-CoV-2. Yuan, Meng; Wang, Yiquan; Lv, Huibin; Wilson, Ian A; Wu, Nicholas C bioRxiv : the preprint server for biology 35611339 2022 May 18
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Modified viral-genetic mapping reveals local and global connectivity relationships of ventral tegmental area dopamine cells. Beier, Kevin eLife 35604019 2022 05 23
Ultra-Sharp Nanowire Arrays Natively Permeate, Record, and Stimulate Intracellular Activity in Neuronal and Cardiac Networks. Liu, Ren; Lee, Jihwan; Tchoe, Youngbin; Pre, Deborah; Bourhis, Andrew M; D'Antonio-Chronowska, Agnieszka; Robin, Gaelle; Lee, Sang Heon; Ro, Yun Goo; Vatsyayan, Ritwik; Tonsfeldt, Karen J; Hossain, Lorraine A; Phipps, M Lisa; Yoo, Jinkyoung; Nogan, John; Martinez, Jennifer S; Frazer, Kelly A; Bang, Anne G; Dayeh, Shadi A Advanced functional materials 35603230 2022 Feb 16
Opto-Thermocapillary Nanomotors on Solid Substrates. Li, Jingang; Kollipara, Pavana Siddhartha; Liu, Ya; Yao, Kan; Liu, Yaoran; Zheng, Yuebing ACS nano 35594375 2022 Jun 28
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Beyond circadian rhythms: Emerging roles of ultradian rhythms in control of liver functions. Asher, Gad; Zhu, Bokai Hepatology (Baltimore, Md.) 35591797 2022 May 19
Localization of EccA3 at the growing pole in Mycobacterium smegmatis. Kriel, Nastassja L; Newton-Foot, Mae; Bennion, Owen T; Aldridge, Bree B; Mehaffy, Carolina; Belisle, John T; Walzl, Gerhard; Warren, Robin M; Sampson, Samantha L; Gey van Pittius, Nico C BMC microbiology 35590245 2022 05 19
In silico assessment of electrophysiological neuronal recordings mediated by magnetoelectric nanoparticles. Bok, Ilhan; Haber, Ido; Qu, Xiaofei; Hai, Aviad Scientific reports 35589877 2022 May 19
ENPP1's regulation of extracellular cGAMP is a ubiquitous mechanism of attenuating STING signaling. Carozza, Jacqueline A; Cordova, Anthony F; Brown, Jenifer A; AlSaif, Yasmeen; Böhnert, Volker; Cao, Xujun; Mardjuki, Rachel E; Skariah, Gemini; Fernandez, Daniel; Li, Lingyin Proceedings of the National Academy of Sciences of the United States of America 35588451 2022 May 24
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Choice-selective sequences dominate in cortical relative to thalamic inputs to NAc to support reinforcement learning. Parker, Nathan F; Baidya, Avinash; Cox, Julia; Haetzel, Laura M; Zhukovskaya, Anna; Murugan, Malavika; Engelhard, Ben; Goldman, Mark S; Witten, Ilana B Cell reports 35584665 2022 May 17
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A Photoacoustic-Fluorescent Imaging Probe for Proteolytic Gingipains Expressed by Porphyromonas gingivalis. Moore, Colman; Cheng, Yong; Tjokro, Natalia; Zhang, Brendan; Kerr, Matthew; Hayati, Mohammed; Chang, Kai Chiao Joe; Shah, Nisarg; Chen, Casey; Jokerst, Jesse V Angewandte Chemie (International ed. in English) 35583940 2022 07 25
Label-Free Vibrational and Quantitative Phase Microscopy Reveals Remarkable Pathogen-Induced Morphomolecular Divergence in Tumor-Derived Cells. Liu, Zhenhui; Parida, Sheetal; Wu, Shaoguang; Sears, Cynthia L; Sharma, Dipali; Barman, Ishan ACS sensors 35583030 2022 05 27
The Astrin-SKAP complex reduces friction at the kinetochore-microtubule interface. Rosas-Salvans, Miquel; Sutanto, Renaldo; Suresh, Pooja; Dumont, Sophie Current biology : CB 35580605 2022 Jun 20
The Oscillating Gut Microbiome and Its Effects on Host Circadian Biology. Litichevskiy, Lev; Thaiss, Christoph A Annual review of nutrition 35576592 2022 08 22
Biologically Derived Neoproteoglycans for Profiling Protein-Glycosaminoglycan Interactions. Porell, Ryan N; Follmar, Julianna L; Purcell, Sean C; Timm, Bryce; Laubach, Logan K; Kozirovskiy, David; Thacker, Bryan E; Glass, Charles A; Gordts, Philip L S M; Godula, Kamil ACS chemical biology 35574759 2022 06 17
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Genome-wide analysis of cis-regulatory changes underlying metabolic adaptation of cavefish. Krishnan, Jaya; Seidel, Chris W; Zhang, Ning; Singh, Narendra Pratap; VanCampen, Jake; Peuß, Robert; Xiong, Shaolei; Kenzior, Alexander; Li, Hua; Conaway, Joan W; Rohner, Nicolas Nature genetics 35551306 2022 05
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A 300-fold conductivity increase in microbial cytochrome nanowires due to temperature-induced restructuring of hydrogen bonding networks. Dahl, Peter J; Yi, Sophia M; Gu, Yangqi; Acharya, Atanu; Shipps, Catharine; Neu, Jens; O'Brien, J Patrick; Morzan, Uriel N; Chaudhuri, Subhajyoti; Guberman-Pfeffer, Matthew J; Vu, Dennis; Yalcin, Sibel Ebru; Batista, Victor S; Malvankar, Nikhil S Science advances 35544567 2022 May 13
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Cell Wall Damage Reveals Spatial Flexibility in Peptidoglycan Synthesis and a Nonredundant Role for RodA in Mycobacteria. Melzer, Emily S; Kado, Takehiro; García-Heredia, Alam; Gupta, Kuldeepkumar Ramnaresh; Meniche, Xavier; Morita, Yasu S; Sassetti, Christopher M; Rego, E Hesper; Siegrist, M Sloan Journal of bacteriology 35543537 2022 06 21
A genome-wide CRISPR-Cas9 knockout screen identifies essential and growth-restricting genes in human trophoblast stem cells. Dong, Chen; Fu, Shuhua; Karvas, Rowan M; Chew, Brian; Fischer, Laura A; Xing, Xiaoyun; Harrison, Jessica K; Popli, Pooja; Kommagani, Ramakrishna; Wang, Ting; Zhang, Bo; Theunissen, Thorold W Nature communications 35538076 2022 05 10
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A LAMP sequencing approach for high-throughput co-detection of SARS-CoV-2 and influenza virus in human saliva. Warneford-Thomson, Robert; Shah, Parisha P; Lundgren, Patrick; Lerner, Jonathan; Morgan, Jason; Davila, Antonio; Abella, Benjamin S; Zaret, Kenneth; Schug, Jonathan; Jain, Rajan; Thaiss, Christoph A; Bonasio, Roberto eLife 35532013 2022 May 09
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Stem-cell-derived trophoblast organoids model human placental development and susceptibility to emerging pathogens. Karvas, Rowan M; Khan, Shafqat A; Verma, Sonam; Yin, Yan; Kulkarni, Devesha; Dong, Chen; Park, Kyoung-Mi; Chew, Brian; Sane, Eshan; Fischer, Laura A; Kumar, Deepak; Ma, Liang; Boon, Adrianus C M; Dietmann, Sabine; Mysorekar, Indira U; Theunissen, Thorold W Cell stem cell 35523141 2022 May 05
Super-Resolution Vibrational Imaging Using Expansion Stimulated Raman Scattering Microscopy. Shi, Lixue; Klimas, Aleksandra; Gallagher, Brendan; Cheng, Zhangyu; Fu, Feifei; Wijesekara, Piyumi; Miao, Yupeng; Ren, Xi; Zhao, Yongxin; Min, Wei Advanced science (Weinheim, Baden-Wurttemberg, Germany) 35521971 2022 07
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Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson's disease. Kamath, Tushar; Abdulraouf, Abdulraouf; Burris, S J; Langlieb, Jonah; Gazestani, Vahid; Nadaf, Naeem M; Balderrama, Karol; Vanderburg, Charles; Macosko, Evan Z Nature neuroscience 35513515 2022 May
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An extended amygdala-midbrain circuit controlling cocaine withdrawal-induced anxiety and reinstatement. Tian, Guilian; Hui, May; Macchia, Desiree; Derdeyn, Pieter; Rogers, Alexandra; Hubbard, Elizabeth; Liu, Chengfeng; Vasquez, Jose J; Taniguchi, Lara; Bartas, Katrina; Carroll, Sean; Beier, Kevin T Cell reports 35508124 2022 05 03
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Profiling the Landscape of Drug Resistance Mutations in Neosubstrates to Molecular Glue Degraders. Gosavi, Pallavi M; Ngan, Kevin C; Yeo, Megan J R; Su, Cindy; Li, Jiaming; Lue, Nicholas Z; Hoenig, Samuel M; Liau, Brian B ACS central science 35505873 2022 Apr 27
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Enhanced safety and efficacy of protease-regulated CAR-T cell receptors. Labanieh, Louai; Majzner, Robbie G; Klysz, Dorota; Sotillo, Elena; Fisher, Chris J; Vilches-Moure, José G; Pacheco, Kaithlen Zen B; Malipatlolla, Meena; Xu, Peng; Hui, Jessica H; Murty, Tara; Theruvath, Johanna; Mehta, Nishant; Yamada-Hunter, Sean A; Weber, Evan W; Heitzeneder, Sabine; Parker, Kevin R; Satpathy, Ansuman T; Chang, Howard Y; Lin, Michael Z; Cochran, Jennifer R; Mackall, Crystal L Cell 35483375 2022 05 12
In situ identification of cellular drug targets in mammalian tissue. Pang, Zhengyuan; Schafroth, Michael A; Ogasawara, Daisuke; Wang, Yu; Nudell, Victoria; Lal, Neeraj K; Yang, Dong; Wang, Kristina; Herbst, Dylan M; Ha, Jacquelyn; Guijas, Carlos; Blankman, Jacqueline L; Cravatt, Benjamin F; Ye, Li Cell 35483372 2022 May 12
Biomaterials to enhance stem cell transplantation. Kharbikar, Bhushan N; Mohindra, Priya; Desai, Tejal A Cell stem cell 35483364 2022 05 05
β-Hydroxybutyrate suppresses colorectal cancer. Dmitrieva-Posocco, Oxana; Wong, Andrea C; Lundgren, Patrick; Golos, Aleksandra M; Descamps, Hélène C; Dohnalová, Lenka; Cramer, Zvi; Tian, Yuhua; Yueh, Brian; Eskiocak, Onur; Egervari, Gabor; Lan, Yemin; Liu, Jinping; Fan, Jiaxin; Kim, Jihee; Madhu, Bhoomi; Schneider, Kai Markus; Khoziainova, Svetlana; Andreeva, Natalia; Wang, Qiaohong; Li, Ning; Furth, Emma E; Bailis, Will; Kelsen, Judith R; Hamilton, Kathryn E; Kaestner, Klaus H; Berger, Shelley L; Epstein, Jonathan A; Jain, Rajan; Li, Mingyao; Beyaz, Semir; Lengner, Christopher J; Katona, Bryson W; Grivennikov, Sergei I; Thaiss, Christoph A; Levy, Maayan Nature 35477756 2022 05
Investigation of β-Substitution Activity of O-Acetylserine Sulfhydrolase from Citrullus vulgaris. Smith, Jamorious L; Harrison, Isa Madrigal; Bingman, Craig A; Buller, Andrew R Chembiochem : a European journal of chemical biology 35476889 2022 Jul 19
Dissociation of nanosilicates induces downstream endochondral differentiation gene expression program. Brokesh, Anna M; Cross, Lauren M; Kersey, Anna L; Murali, Aparna; Richter, Christopher; Gregory, Carl A; Singh, Irtisha; Gaharwar, Akhilesh K Science advances 35476448 2022 Apr 29
Atomistic modeling and rational design of optothermal tweezers for targeted applications. Ding, Hongru; Kollipara, Pavana Siddhartha; Lin, Linhan; Zheng, Yuebing Nano research 35475031 2021 Jan
JAK inhibitor blocks COVID-19 cytokine-induced JAK/STAT/APOL1 signaling in glomerular cells and podocytopathy in human kidney organoids. Nystrom, Sarah E; Li, Guojie; Datta, Somenath; Soldano, Karen L; Silas, Daniel; Weins, Astrid; Hall, Gentzon; Thomas, David B; Olabisi, Opeyemi A JCI insight 35472001 2022 06 08
The endoplasmic reticulum adopts two distinct tubule forms. Wang, Bowen; Zhao, Zhiheng; Xiong, Michael; Yan, Rui; Xu, Ke Proceedings of the National Academy of Sciences of the United States of America 35471903 2022 May 03
Meiotic cDNA libraries reveal gene truncations and mitochondrial proteins important for competitive fitness in Saccharomyces cerevisiae. Sing, Tina L; Conlon, Katie; Lu, Stephanie H; Madrazo, Nicole; Morse, Kaitlin; Barker, Juliet C; Hollerer, Ina; Brar, Gloria A; Sudmant, Peter H; Ünal, Elçin Genetics 35471663 2022 05 31
Geographic accessibility to health facilities predicts uptake of community-based tuberculosis screening in an urban setting. Jenkins, Helen E; Ayuk, Sally; Puma, Daniela; Brooks, Meredith B; Millones, Ana Karina; Jimenez, Judith; Lecca, Leonid; Galea, Jerome T; Becerra, Mercedes; Keshavjee, Salmaan; Yuen, Courtney M International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 35470023 2022 Apr 22
Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection. Kumata, Ryuichi; Iwanami, Shoya; Mar, Katrina B; Kakizoe, Yusuke; Misawa, Naoko; Nakaoka, Shinji; Koyanagi, Yoshio; Perelson, Alan S; Schoggins, John W; Iwami, Shingo; Sato, Kei PLoS computational biology 35468127 2022 04
Intracellular Formation of a DNA Damage-Induced, Histone Post-Translational Modification Following Bleomycin Treatment. Jacinto, Marco Paolo; Fried, Stephen D; Greenberg, Marc M Journal of the American Chemical Society 35467863 2022 05 04
Flexible use of memory by food-caching birds. Applegate, Marissa C; Aronov, Dmitriy eLife 35467526 2022 04 25
Neuronal mTOR Outposts: Implications for Translation, Signaling, and Plasticity. Altas, Bekir; Romanowski, Andrea J; Bunce, Garrett W; Poulopoulos, Alexandros Frontiers in cellular neuroscience 35465614 2022
Integrating transcription-factor abundance with chromatin accessibility in human erythroid lineage commitment. Baskar, Reema; Chen, Amy F; Favaro, Patricia; Reynolds, Warren; Mueller, Fabian; Borges, Luciene; Jiang, Sizun; Park, Hyun Shin; Kool, Eric T; Greenleaf, William J; Bendall, Sean C Cell reports methods 35463156 2022 Mar 28
DYVIC: DYnamic VIrus Control in Peru. Lossio-Ventura, Juan Antonio; Alatrista-Salas, Hugo; Barrena, Kevin; Linos, Eleni; Nunez-Del-Prado, Miguel; Talavera, Alvaro Proceedings. IEEE International Conference on Bioinformatics and Biomedicine 35462884 2020 Dec
Epithelial-immune crosstalk in health and disease. Rosenblum, Daniel; Naik, Shruti Current opinion in genetics & development 35461159 2022 06
Transcranial Pulsed-Current Stimulation versus Transcranial Direct Current Stimulation in Patients with Disorders of Consciousness: A Pilot, Sham-Controlled Cross-Over Double-Blind Study. Barra, Alice; Rosenfelder, Martin; Mortaheb, Sepehr; Carrière, Manon; Martens, Geraldine; Bodien, Yelena G; Morales-Quezada, Leon; Bender, Andreas; Laureys, Steven; Thibaut, Aurore; Fregni, Felipe Brain sciences 35447961 2022 Mar 24
LEtS set the tone. Joshi, Vikram; Beyder, Arthur The Journal of physiology 35445403 2022 06
Enhancing Single-Molecule Fluorescence Spectroscopy with Simple and Robust Hybrid Nanoapertures. Kotnala, Abhay; Ding, Hongru; Zheng, Yuebing ACS photonics 35445142 2021 Jun 16
Somatic genomic changes in single Alzheimer's disease neurons. Miller, Michael B; Huang, August Yue; Kim, Junho; Zhou, Zinan; Kirkham, Samantha L; Maury, Eduardo A; Ziegenfuss, Jennifer S; Reed, Hannah C; Neil, Jennifer E; Rento, Lariza; Ryu, Steven C; Ma, Chanthia C; Luquette, Lovelace J; Ames, Heather M; Oakley, Derek H; Frosch, Matthew P; Hyman, Bradley T; Lodato, Michael A; Lee, Eunjung Alice; Walsh, Christopher A Nature 35444284 2022 04
Presentation of the Julius M. Friedenwald Medal to Timothy C. Wang, MD, AGAF. Abrams, Julian; Camilleri, Michael; Merchant, Juanita; Rustgi, Anil K; Yan, Kelley Gastroenterology 35443933 2022 Jun
Inhibitory co-transmission from midbrain dopamine neurons relies on presynaptic GABA uptake. Melani, Riccardo; Tritsch, Nicolas X Cell reports 35443174 2022 04 19
ATG4A regulates human erythroid maturation and mitochondrial clearance. Stolla, Massiel Chavez; Reilly, Andreea; Bergantinos, Rochelle; Stewart, Sintra; Thom, Neele; Clough, Courtnee A; Wellington, Rachel C; Stolitenko, Raisa; Abkowitz, Janis L; Doulatov, Sergei Blood advances 35443024 2022 06 28
Simultaneous monitoring of disease and microbe dynamics through plasma DNA sequencing in pediatric patients with acute lymphoblastic leukemia. Barsan, Valentin; Xia, Yuntao; Klein, David; Gonzalez-Pena, Veronica; Youssef, Sarah; Inaba, Yuki; Mahmud, Ousman; Natarajan, Sivaraman; Agarwal, Vibhu; Pang, Yakun; Autry, Robert; Pui, Ching-Hon; Inaba, Hiroto; Evans, William; Gawad, Charles Science advances 35442732 2022 04 22
You got rhythm, or more: The multidimensionality of rhythmic abilities. Fiveash, Anna; Bella, Simone Dalla; Bigand, Emmanuel; Gordon, Reyna L; Tillmann, Barbara Attention, perception & psychophysics 35437703 2022 May
Immunotherapy of Neuroblastoma: Facts and Hopes. Anderson, John; Majzner, Robbie G; Sondel, Paul M Clinical cancer research : an official journal of the American Association for Cancer Research 35435953 2022 Aug 02
The Chronic Wound Phageome: Phage Diversity and Associations with Wounds and Healing Outcomes. Verbanic, Samuel; Deacon, John M; Chen, Irene A Microbiology spectrum 35435739 2022 Jun 29
Human Coronary Plaque T Cells Are Clonal and Cross-React to Virus and Self. Chowdhury, Roshni Roy; D'Addabbo, Jessica; Huang, Xianxi; Veizades, Stefan; Sasagawa, Koki; Louis, David M; Cheng, Paul; Sokol, Jan; Jensen, Annie; Tso, Alexandria; Shankar, Vishnu; Wendel, Ben Shogo; Bakerman, Isaac; Liang, Grace; Koyano, Tiffany; Fong, Circulation research 35430876 2022 05 13
Modular design of synthetic receptors for programmed gene regulation in cell therapies. Zhu, Iowis; Liu, Raymond; Garcia, Julie M; Hyrenius-Wittsten, Axel; Piraner, Dan I; Alavi, Josef; Israni, Divya V; Liu, Bin; Khalil, Ahmad S; Roybal, Kole T Cell 35427499 2022 Apr 14
Chromatin architecture in addiction circuitry identifies risk genes and potential biological mechanisms underlying cigarette smoking and alcohol use traits. Sey, Nancy Y A; Hu, Benxia; Iskhakova, Marina; Lee, Sool; Sun, Huaigu; Shokrian, Neda; Ben Hutta, Gabriella; Marks, Jesse A; Quach, Bryan C; Johnson, Eric O; Hancock, Dana B; Akbarian, Schahram; Won, Hyejung Molecular psychiatry 35422469 2022 Apr 14
Cupric Ions Selectively Modulate TRAAK-Phosphatidylserine Interactions. Zhu, Yun; Schrecke, Samantha; Tang, Shuli; Odenkirk, Melanie T; Walker, Thomas; Stover, Lauren; Lyu, Jixing; Zhang, Tianqi; Russell, David; Baker, Erin S; Yan, Xin; Laganowsky, Arthur Journal of the American Chemical Society 35421309 2022 04 27
Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging. Gabriele, Michele; Brandão, Hugo B; Grosse-Holz, Simon; Jha, Asmita; Dailey, Gina M; Cattoglio, Claudia; Hsieh, Tsung-Han S; Mirny, Leonid; Zechner, Christoph; Hansen, Anders S Science (New York, N.Y.) 35420890 2022 04 29
Site-Selective Deuteration of Amino Acids through Dual-Protein Catalysis. Doyon, Tyler J; Buller, Andrew R Journal of the American Chemical Society 35416652 2022 04 27
Prioritizing COVID-19 vaccination efforts and dose allocation within Madagascar. Rasambainarivo, Fidisoa; Ramiadantsoa, Tanjona; Raherinandrasana, Antso; Randrianarisoa, Santatra; Rice, Benjamin L; Evans, Michelle V; Roche, Benjamin; Randriatsarafara, Fidiniaina Mamy; Wesolowski, Amy; Metcalf, Jessica C BMC public health 35413894 2022 04 12
Dynamics of Drosophila endoderm specification. Keenan, Shannon E; Avdeeva, Maria; Yang, Liu; Alber, Daniel S; Wieschaus, Eric F; Shvartsman, Stanislav Y Proceedings of the National Academy of Sciences of the United States of America 35412853 2022 04 12
Capsaicin as an amphipathic modulator of NaV1.5 mechanosensitivity. Cowan, Luke M; Strege, Peter R; Rusinova, Radda; Andersen, Olaf S; Farrugia, Gianrico; Beyder, Arthur Channels (Austin, Tex.) 35412435 2022 Dec
Transient docking of synaptic vesicles: Implications and mechanisms. Kusick, Grant F; Ogunmowo, Tyler H; Watanabe, Shigeki Current opinion in neurobiology 35398664 2022 06
A large-scale systematic survey reveals recurring molecular features of public antibody responses to SARS-CoV-2. Wang, Yiquan; Yuan, Meng; Lv, Huibin; Peng, Jian; Wilson, Ian A; Wu, Nicholas C Immunity 35397794 2022 Mar 25
Antigen identification and high-throughput interaction mapping by reprogramming viral entry. Dobson, Connor S; Reich, Anna N; Gaglione, Stephanie; Smith, Blake E; Kim, Ellen J; Dong, Jiayi; Ronsard, Larance; Okonkwo, Vintus; Lingwood, Daniel; Dougan, Michael; Dougan, Stephanie K; Birnbaum, Michael E Nature methods 35396484 2022 04
Unlocking capacities of genomics for the COVID-19 response and future pandemics. Knyazev, Sergey; Chhugani, Karishma; Sarwal, Varuni; Ayyala, Ram; Singh, Harman; Karthikeyan, Smruthi; Deshpande, Dhrithi; Baykal, Pelin Icer; Comarova, Zoia; Lu, Angela; Porozov, Yuri; Vasylyeva, Tetyana I; Wertheim, Joel O; Tierney, Braden T; Chiu, Charles Y; Sun, Ren; Wu, Aiping; Abedalthagafi, Malak S; Pak, Victoria M; Nagaraj, Shivashankar H; Smith, Adam L; Skums, Pavel; Pasaniuc, Bogdan; Komissarov, Andrey; Mason, Christopher E; Bortz, Eric; Lemey, Philippe; Kondrashov, Fyodor; Beerenwinkel, Niko; Lam, Tommy Tsan-Yuk; Wu, Nicholas C; Zelikovsky, Alex; Knight, Rob; Crandall, Keith A; Mangul, Serghei Nature methods 35396471 2022 04
The Retinal Basis of Light Aversion in Neonatal Mice. Caval-Holme, Franklin S; Aranda, Marcos L; Chen, Andy Q; Tiriac, Alexandre; Zhang, Yizhen; Smith, Benjamin; Birnbaumer, Lutz; Schmidt, Tiffany M; Feller, Marla B The Journal of neuroscience : the official journal of the Society for Neuroscience 35396331 2022 05 18
Phage anti-CBASS and anti-Pycsar nucleases subvert bacterial immunity. Hobbs, Samuel J; Wein, Tanita; Lu, Allen; Morehouse, Benjamin R; Schnabel, Julia; Leavitt, Azita; Yirmiya, Erez; Sorek, Rotem; Kranzusch, Philip J Nature 35395152 2022 May
Comprehensive analysis of DNA replication timing across 184 cell lines suggests a role for MCM10 in replication timing regulation. Caballero, Madison; Ge, Tiffany; Rebelo, Ana Rita; Seo, Seungmae; Kim, Sean; Brooks, Kayla; Zuccaro, Michael; Kanagaraj, Radhakrishnan; Vershkov, Dan; Kim, Dongsung; Smogorzewska, Agata; Smolka, Marcus; Benvenisty, Nissim; West, Stephen C; Egli, Dieter; Mace, Emily M; Koren, Amnon Human molecular genetics 35394024 2022 Apr 08
Structural insight into protein-protein interactions between intestinal microbiome and host. Post, Sarah E; Brito, Ilana L Current opinion in structural biology 35390637 2022 06
Skin Microbiome Variation with Cancer Progression in Human Cutaneous Squamous Cell Carcinoma. Voigt, Anita Y; Emiola, Akintunde; Johnson, Jethro S; Fleming, Elizabeth S; Nguyen, Hoan; Zhou, Wei; Tsai, Kenneth Y; Fink, Christine; Oh, Julia The Journal of investigative dermatology 35390349 2022 Oct
Enhanced lipogenesis through Pparγ helps cavefish adapt to food scarcity. Xiong, Shaolei; Wang, Wei; Kenzior, Alexander; Olsen, Luke; Krishnan, Jaya; Persons, Jenna; Medley, Kyle; Peuß, Robert; Wang, Yongfu; Chen, Shiyuan; Zhang, Ning; Thomas, Nancy; Miles, John M; Alvarado, Alejandro Sánchez; Rohner, Nicolas Current biology : CB 35390280 2022 May 23
The FUS::DDIT3 fusion oncoprotein inhibits BAF complex targeting and activity in myxoid liposarcoma. Zullow, Hayley J; Sankar, Akshay; Ingram, Davis R; Samé Guerra, Daniel D; D'Avino, Andrew R; Collings, Clayton K; Lazcano, Rossana; Wang, Wei-Lien; Liang, Yu; Qi, Jun; Lazar, Alexander J; Kadoch, Cigall Molecular cell 35390276 2022 05 05
Tuning T cell receptor sensitivity through catch bond engineering. Zhao, Xiang; Kolawole, Elizabeth M; Chan, Waipan; Feng, Yinnian; Yang, Xinbo; Gee, Marvin H; Jude, Kevin M; Sibener, Leah V; Fordyce, Polly M; Germain, Ronald N; Evavold, Brian D; Garcia, K Christopher Science (New York, N.Y.) 35389803 2022 04 08
Causal Gene Confusion: The Complicated EDN1/PHACTR1 Locus for Coronary Artery Disease. Gupta, Rajat M Arteriosclerosis, thrombosis, and vascular biology 35387481 2022 May
OBIF: an omics-based interaction framework to reveal molecular drivers of synergy. Pantaleón García, Jezreel; Kulkarni, Vikram V; Reese, Tanner C; Wali, Shradha; Wase, Saima J; Zhang, Jiexin; Singh, Ratnakar; Caetano, Mauricio S; Kadara, Humam; Moghaddam, Seyed Javad; Johnson, Faye M; Wang, Jing; Wang, Yongxing; Evans, Scott E NAR genomics and bioinformatics 35387383 2022 Jun
Epithelial STAT6 O-GlcNAcylation drives a concerted anti-helminth alarmin response dependent on tuft cell hyperplasia and Gasdermin C. Zhao, Ming; Ren, Kaiqun; Xiong, Xiwen; Xin, Yue; Zou, Yujie; Maynard, Jason C; Kim, Angela; Battist, Alexander P; Koneripalli, Navya; Wang, Yusu; Chen, Qianyue; Xin, Ruyue; Yang, Chenyan; Huang, Rong; Yu, Jiahui; Huang, Zan; Zhang, Zengdi; Wang, Haiguang; Wang, Daoyuan; Xiao, Yihui; Salgado, Oscar C; Jarjour, Nicholas N; Hogquist, Kristin A; Revelo, Xavier S; Burlingame, Alma L; Gao, Xiang; von Moltke, Jakob; Lin, Zhaoyu; Ruan, Hai-Bin Immunity 35385697 2022 04 12
Optics-Free Chip-Scale Intraoperative Imaging Using NIR-Excited Upconverting Nanoparticles. Najafiaghdam, Hossein; Pedroso, Cassio C S; Cohen, Bruce E; Anwar, Mekhail IEEE transactions on biomedical circuits and systems 35385388 2022 04
Mendelian randomization supports bidirectional causality between telomere length and clonal hematopoiesis of indeterminate potential. Nakao, Tetsushi; Bick, Alexander G; Taub, Margaret A; Zekavat, Seyedeh M; Uddin, Md M; Niroula, Abhishek; Carty, Cara L; Lane, John; Honigberg, Michael C; Weinstock, Joshua S; Pampana, Akhil; Gibson, Christopher J; Griffin, Gabriel K; Clarke, Shoa L; Bhattacharya, Romit; Assimes, Themistocles L; Emery, Leslie S; Stilp, Adrienne M; Wong, Quenna; Broome, Jai; Laurie, Cecelia A; Khan, Alyna T; Smith, Albert V; Blackwell, Thomas W; Codd, Veryan; Nelson, Christopher P; Yoneda, Zachary T; Peralta, Juan M; Bowden, Donald W; Irvin, Marguerite R; Boorgula, Meher; Zhao, Wei; Yanek, Lisa R; Wiggins, Kerri L; Hixson, James E; Gu, C Charles; Peloso, Gina M; Roden, Dan M; Reupena, Muagututi'a S; Hwu, Chii-Min; DeMeo, Dawn L; North, Kari E; Kelly, Shannon; Musani, Solomon K; Bis, Joshua C; Lloyd-Jones, Donald M; Johnsen, Jill M; Preuss, Michael; Tracy, Russell P; Peyser, Patricia A; Qiao, Dandi; Desai, Pinkal; Curran, Joanne E; Freedman, Barry I; Tiwari, Hemant K; Chavan, Sameer; Smith, Jennifer A; Smith, Nicholas L; Kelly, Tanika N; Hidalgo, Bertha; Cupples, L Adrienne; Weeks, Daniel E; Hawley, Nicola L; Minster, Ryan L; Samoan Obesity, Lifestyle and Genetic Adaptations Study (OLaGA) Group; Deka, Ranjan; Naseri, Take T; de Las Fuentes, Lisa; Raffield, Laura M; Morrison, Alanna C; Vries, Paul S; Ballantyne, Christie M; Kenny, Eimear E; Rich, Stephen S; Whitsel, Eric A; Cho, Michael H; Shoemaker, M Benjamin; Pace, Betty S; Blangero, John; Palmer, Nicholette D; Mitchell, Braxton D; Shuldiner, Alan R; Barnes, Kathleen C; Redline, Susan; Kardia, Sharon L R; Abecasis, Gonçalo R; Becker, Lewis C; Heckbert, Susan R; He, Jiang; Post, Wendy; Arnett, Donna K; Vasan, Ramachandran S; Darbar, Dawood; Weiss, Scott T; McGarvey, Stephen T; de Andrade, Mariza; Chen, Yii-Der Ida; Kaplan, Robert C; Meyers, Deborah A; Custer, Brian S; Correa, Adolfo; Psaty, Bruce M; Fornage, Myriam; Manson, JoAnn E; Boerwinkle, Eric; Konkle, Barbara A; Loos, Ruth J F; Rotter, Jerome I; Silverman, Edwin K; Kooperberg, Charles; Danesh, John; Samani, Nilesh J; Jaiswal, Siddhartha; Libby, Peter; Ellinor, Patrick T; Pankratz, Nathan; Ebert, Benjamin L; Reiner, Alexander P; Mathias, Rasika A; Do, Ron; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Natarajan, Pradeep Science advances 35385311 2022 Apr 08
Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells. Jiang, Connie L; Goyal, Yogesh; Jain, Naveen; Wang, Qiaohong; Truitt, Rachel E; Coté, Allison J; Emert, Benjamin; Mellis, Ian A; Kiani, Karun; Yang, Wenli; Jain, Rajan; Raj, Arjun Genome biology 35382863 2022 Apr 05
Firearm Violence Following the Implementation of California's Gun Violence Restraining Order Law. Pear, Veronica A; Wintemute, Garen J; Jewell, Nicholas P; Ahern, Jennifer JAMA network open 35380646 2022 04 01
Impact of collagen-like peptide (CLP) heterotrimeric triple helix design on helical thermal stability and hierarchical assembly: a coarse-grained molecular dynamics simulation study. Taylor, Phillip A; Kloxin, April M; Jayaraman, Arthi Soft matter 35380571 2022 Apr 20
Listeria monocytogenes requires cellular respiration for NAD+ regeneration and pathogenesis. Rivera-Lugo, Rafael; Deng, David; Anaya-Sanchez, Andrea; Tejedor-Sanz, Sara; Tang, Eugene; Reyes Ruiz, Valeria M; Smith, Hans B; Titov, Denis V; Sauer, John-Demian; Skaar, Eric P; Ajo-Franklin, Caroline M; Portnoy, Daniel A; Light, Samuel H eLife 35380108 2022 04 05
Impaired neurogenesis alters brain biomechanics in a neuroprogenitor-based genetic subtype of congenital hydrocephalus. Duy, Phan Q; Weise, Stefan C; Marini, Claudia; Li, Xiao-Jun; Liang, Dan; Dahl, Peter J; Ma, Shaojie; Spajic, Ana; Dong, Weilai; Juusola, Jane; Kiziltug, Emre; Kundishora, Adam J; Koundal, Sunil; Pedram, Maysam Z; Torres-Fernández, Lucia A; Händler, Kristian; De Domenico, Elena; Becker, Matthias; Ulas, Thomas; Juranek, Stefan A; Cuevas, Elisa; Hao, Le Thi; Jux, Bettina; Sousa, André M M; Liu, Fuchen; Kim, Suel-Kee; Li, Mingfeng; Yang, Yiying; Takeo, Yutaka; Duque, Alvaro; Nelson-Williams, Carol; Ha, Yonghyun; Selvaganesan, Kartiga; Robert, Stephanie M; Singh, Amrita K; Allington, Garrett; Furey, Charuta G; Timberlake, Andrew T; Reeves, Benjamin C; Smith, Hannah; Dunbar, Ashley; DeSpenza Jr, Tyrone; Goto, June; Marlier, Arnaud; Moreno-De-Luca, Andres; Yu, Xin; Butler, William E; Carter, Bob S; Lake, Evelyn M R; Constable, R Todd; Rakic, Pasko; Lin, Haifan; Deniz, Engin; Benveniste, Helene; Malvankar, Nikhil S; Estrada-Veras, Juvianee I; Walsh, Christopher A; Alper, Seth L; Schultze, Joachim L; Paeschke, Katrin; Doetzlhofer, Angelika; Wulczyn, F Gregory; Jin, Sheng Chih; Lifton, Richard P; Sestan, Nenad; Kolanus, Waldemar; Kahle, Kristopher T Nature neuroscience 35379995 2022 Apr 04
A split prime editor with untethered reverse transcriptase and circular RNA template. Liu, Bin; Dong, Xiaolong; Cheng, Haoyang; Zheng, Chunwei; Chen, Zexiang; Rodríguez, Tomás C; Liang, Shun-Qing; Xue, Wen; Sontheimer, Erik J Nature biotechnology 35379962 2022 09
SLEAP: A deep learning system for multi-animal pose tracking. Pereira, Talmo D; Tabris, Nathaniel; Matsliah, Arie; Turner, David M; Li, Junyu; Ravindranath, Shruthi; Papadoyannis, Eleni S; Normand, Edna; Deutsch, David S; Wang, Z Yan; McKenzie-Smith, Grace C; Mitelut, Catalin C; Castro, Marielisa Diez; D'Uva, John; Kislin, Mikhail; Sanes, Dan H; Kocher, Sarah D; Wang, Samuel S-H; Falkner, Annegret L; Shaevitz, Joshua W; Murthy, Mala Nature methods 35379947 2022 04
Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions. Roy, Dheeraj S; Park, Young-Gyun; Kim, Minyoung E; Zhang, Ying; Ogawa, Sachie K; DiNapoli, Nicholas; Gu, Xinyi; Cho, Jae H; Choi, Heejin; Kamentsky, Lee; Martin, Jared; Mosto, Olivia; Aida, Tomomi; Chung, Kwanghun; Tonegawa, Susumu Nature communications 35379803 2022 04 04
Engineered biosynthesis of alkyne-tagged polyketides. Gu, Di; Zhang, Wenjun Methods in enzymology 35379442 2022
Synchronization of RF data in ultrasound open platforms (UOPs) for high-accuracy and high-resolution photoacoustic tomography using the "Scissors" programming method. Fu, Lei; Jin, Zhicheng; Qi, Baiyan; Yim, Wonjun; Wu, Zhuohong; He, Tengyu; Joksert, Jesse V IEEE transactions on ultrasonics, ferroelectrics, and frequency control 35377843 2022 Apr 04
Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia. Su-Feher, Linda; Rubin, Anna N; Silberberg, Shanni N; Catta-Preta, Rinaldo; Lim, Kenneth J; Ypsilanti, Athena R; Zdilar, Iva; McGinnis, Christopher S; McKinsey, Gabriel L; Rubino Jr, Thomas E; Hawrylycz, Michael J; Thompson, Carol; Gartner, Zev J; Puelles, Luis; Zeng, Hongkui; Rubenstein, John L R; Nord, Alex S Proceedings of the National Academy of Sciences of the United States of America 35377797 2022 04 12
Studying Murine Small Bowel Mechanosensing of Luminal Particulates. Mercado-Perez, Arnaldo; Wegner, Andrew; Knutson, Kaitlyn; Zumchak, Michael; Beyder, Arthur Journal of visualized experiments : JoVE 35377361 2022 03 18
Peptide-Induced Fractal Assembly of Silver Nanoparticles for Visual Detection of Disease Biomarkers. Retout, Maurice; Mantri, Yash; Jin, Zhicheng; Zhou, Jiajing; Noël, Grégoire; Donovan, Brian; Yim, Wonjun; Jokerst, Jesse V ACS nano 35377141 2022 Apr 04
A Dual-Modal Single-Antibody Plasmonic Spectro-Immunoassay for Detection of Small Molecules. Zheng, Peng; Wu, Lintong; Raj, Piyush; Mizutani, Takayuki; Szabo, Miklos; Hanson, William A; Barman, Ishan Small (Weinheim an der Bergstrasse, Germany) 35373504 2022 May
Estimating muscle activation from EMG using deep learning-based dynamical systems models. Wimalasena, Lahiru N; Braun, Jonas F; Keshtkaran, Mohammad Reza; Hofmann, David; Gallego, Juan Álvaro; Alessandro, Cristiano; Tresch, Matthew C; Miller, Lee E; Pandarinath, Chethan Journal of neural engineering 35366649 2022 05 19
Deciphering albumin-directed drug delivery by imaging. Hu, Huiyu; Quintana, Jeremy; Weissleder, Ralph; Parangi, Sareh; Miller, Miles Advanced drug delivery reviews 35364124 2022 06
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Complete genomic and epigenetic maps of human centromeres. Altemose, Nicolas; Logsdon, Glennis A; Bzikadze, Andrey V; Sidhwani, Pragya; Langley, Sasha A; Caldas, Gina V; Hoyt, Savannah J; Uralsky, Lev; Ryabov, Fedor D; Shew, Colin J; Sauria, Michael E G; Borchers, Matthew; Gershman, Ariel; Mikheenko, Alla; Shepelev, Valery A; Dvorkina, Tatiana; Kunyavskaya, Olga; Vollger, Mitchell R; Rhie, Arang; McCartney, Ann M; Asri, Mobin; Lorig-Roach, Ryan; Shafin, Kishwar; Lucas, Julian K; Aganezov, Sergey; Olson, Daniel; de Lima, Leonardo Gomes; Potapova, Tamara; Hartley, Gabrielle A; Haukness, Marina; Kerpedjiev, Peter; Gusev, Fedor; Tigyi, Kristof; Brooks, Shelise; Young, Alice; Nurk, Sergey; Koren, Sergey; Salama, Sofie R; Paten, Benedict; Rogaev, Evgeny I; Streets, Aaron; Karpen, Gary H; Dernburg, Abby F; Sullivan, Beth A; Straight, Aaron F; Wheeler, Travis J; Gerton, Jennifer L; Eichler, Evan E; Phillippy, Adam M; Timp, Winston; Dennis, Megan Y; O'Neill, Rachel J; Zook, Justin M; Schatz, Michael C; Pevzner, Pavel A; Diekhans, Mark; Langley, Charles H; Alexandrov, Ivan A; Miga, Karen H Science (New York, N.Y.) 35357911 2022 04
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A Micropatterning Assay for Measuring Cell Chirality. Zhang, Haokang; Ronaldson-Bouchard, Kacey; Vunjak-Novakovic, Gordana; Wan, Leo Q Journal of visualized experiments : JoVE 35343954 2022 03 11
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Spatial transcriptomic reconstruction of the mouse olfactory glomerular map suggests principles of odor processing. Wang, I-Hao; Murray, Evan; Andrews, Greg; Jiang, Hao-Ching; Park, Sung Jin; Donnard, Elisa; Durán-Laforet, Violeta; Bear, Daniel M; Faust, Travis E; Garber, Manuel; Baer, Christina E; Schafer, Dorothy P; Weng, Zhiping; Chen, Fei; Macosko, Evan Z; Greer, Paul L Nature neuroscience 35314823 2022 04
Screening for modulators of the cellular composition of gut epithelia via organoid models of intestinal stem cell differentiation. Mead, Benjamin E; Hattori, Kazuki; Levy, Lauren; Imada, Shinya; Goto, Norihiro; Vukovic, Marko; Sze, Daphne; Kummerlowe, Conner; Matute, Juan D; Duan, Jinzhi; Langer, Robert; Blumberg, Richard S; Ordovas-Montanes, Jose; Yilmaz, Ömer H; Karp, Jeffrey M; Shalek, Alex K Nature biomedical engineering 35314801 2022 Apr
Optical manipulation and assembly of micro/nanoscale objects on solid substrates. Li, Jingang; Alfares, Ali; Zheng, Yuebing iScience 35313687 2022 Apr 15
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Editorial: Dopamine Neuron Diversity in Circuits and Diseases. Poulin, Jean-Francois; Lerner, Talia Newcombe; Howe, Mark W Frontiers in neural circuits 35310549 2022
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A genome-scale screen for synthetic drivers of T cell proliferation. Legut, Mateusz; Gajic, Zoran; Guarino, Maria; Daniloski, Zharko; Rahman, Jahan A; Xue, Xinhe; Lu, Congyi; Lu, Lu; Mimitou, Eleni P; Hao, Stephanie; Davoli, Teresa; Diefenbach, Catherine; Smibert, Peter; Sanjana, Neville E Nature 35296855 2022 03
The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes. Garipler, Görkem; Lu, Congyi; Morrissey, Alexis; Lopez-Zepeda, Lorena S; Pei, Yingzhen; Vidal, Simon E; Zen Petisco Fiore, Ana Paula; Aydin, Begüm; Stadtfeld, Matthias; Ohler, Uwe; Mahony, Shaun; Sanjana, Neville E; Mazzoni, Esteban O Cell reports 35294876 2022 Mar 15
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Biochemistry, Cell Biology, and Pathophysiology of the Innate Immune cGAS-cGAMP-STING Pathway. Ritchie, Christopher; Carozza, Jacqueline A; Li, Lingyin Annual review of biochemistry 35287475 2022 06 21
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A genome-scale gain-of-function CRISPR screen in CD8 T cells identifies proline metabolism as a means to enhance CAR-T therapy. Ye, Lupeng; Park, Jonathan J; Peng, Lei; Yang, Quanjun; Chow, Ryan D; Dong, Matthew B; Lam, Stanley Z; Guo, Jianjian; Tang, Erting; Zhang, Yueqi; Wang, Guangchuan; Dai, Xiaoyun; Du, Yaying; Kim, Hyunu R; Cao, Hanbing; Errami, Youssef; Clark, Paul; Bersenev, Alexey; Montgomery, Ruth R; Chen, Sidi Cell metabolism 35276062 2022 Apr 05
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Defining the mammalian coactivation of hepatic 12-h clock and lipid metabolism. Meng, Huan; Gonzales, Naomi M; Jung, Sung Yun; Lu, Yue; Putluri, Nagireddy; Zhu, Bokai; Dacso, Clifford C; Lonard, David M; O'Malley, Bert W Cell reports 35263593 2022 03 08
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Identifying a brain network for musical rhythm: A functional neuroimaging meta-analysis and systematic review. Kasdan, Anna V; Burgess, Andrea N; Pizzagalli, Fabrizio; Scartozzi, Alyssa; Chern, Alexander; Kotz, Sonja A; Wilson, Stephen M; Gordon, Reyna L Neuroscience and biobehavioral reviews 35259422 2022 05
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Field validation of the performance of paper-based tests for the detection of the Zika and chikungunya viruses in serum samples. Karlikow, Margot; da Silva, Severino Jefferson Ribeiro; Guo, Yuxiu; Cicek, Seray; Krokovsky, Larissa; Homme, Paige; Xiong, Yilin; Xu, Talia; Calderón-Peláez, Maria-Angelica; Camacho-Ortega, Sigrid; Ma, Duo; de Magalhães, Jurandy Júnior Ferraz; Souza, Bárbara Nayane Rosário Fernandes; de Albuquerque Cabral, Diego Guerra; Jaenes, Katariina; Sutyrina, Polina; Ferrante, Tom; Benitez, Andrea Denisse; Nipaz, Victoria; Ponce, Patricio; Rackus, Darius G; Collins, James J; Paiva, Marcelo; Castellanos, Jaime E; Cevallos, Varsovia; Green, Alexander A; Ayres, Constância; Pena, Lindomar; Pardee, Keith Nature biomedical engineering 35256758 2022 Mar
Co-targeting of BAX and BCL-XL proteins broadly overcomes resistance to apoptosis in cancer. Lopez, Andrea; Reyna, Denis E; Gitego, Nadege; Kopp, Felix; Zhou, Hua; Miranda-Roman, Miguel A; Nordstrøm, Lars Ulrik; Narayanagari, Swathi-Rao; Chi, Ping; Vilar, Eduardo; Tsirigos, Aristotelis; Gavathiotis, Evripidis Nature communications 35256598 2022 03 07
A single factor elicits multilineage reprogramming of astrocytes in the adult mouse striatum. Zhang, Yunjia; Li, Boxun; Cananzi, Sergio; Han, Chuanhui; Wang, Lei-Lei; Zou, Yuhua; Fu, Yang-Xin; Hon, Gary C; Zhang, Chun-Li Proceedings of the National Academy of Sciences of the United States of America 35254903 2022 03 15
Probing the Mechanism of Isonitrile Formation by a Non-Heme Iron(II)-Dependent Oxidase/Decarboxylase. Del Rio Flores, Antonio; Kastner, David W; Du, Yongle; Narayanamoorthy, Maanasa; Shen, Yuanbo; Cai, Wenlong; Vennelakanti, Vyshnavi; Zill, Nicholas A; Dell, Luisa B; Zhai, Rui; Kulik, Heather J; Zhang, Wenjun Journal of the American Chemical Society 35254829 2022 Apr 06
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Simultaneous Visualization of the Dynamics of Crosslinked and Single Microtubules In Vitro by TIRF Microscopy. Mani, Nandini; Marchan, Michelle F; Subramanian, Radhika Journal of visualized experiments : JoVE 35253794 2022 02 18
Chromatin Changes in Phytochrome Interacting Factor-Regulated Genes Parallel Their Rapid Transcriptional Response to Light. González-Grandío, Eduardo; Álamos, Simón; Zhang, Yu; Dalton-Roesler, Jutta; Niyogi, Krishna K; García, Hernán G; Quail, Peter H Frontiers in plant science 35251080 2022
Effectiveness of Mask-Wearing on Respiratory Illness Transmission in Community Settings: A Rapid Review. Baier, Megan; Knobloch, Mary Jo; Osman, Fauzia; Safdar, Nasia Disaster medicine and public health preparedness 35249589 2022 Mar 07
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Multiscale Invasion Assay for Probing Macrophage Response to Gram-Negative Bacteria. Wodzanowski, Kimberly A; Caplan, Jeffrey L; Kloxin, April M; Grimes, Catherine L Frontiers in chemistry 35242744 2022
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The chromatin organization of a chlorarachniophyte nucleomorph genome. Marinov, Georgi K; Chen, Xinyi; Wu, Tong; He, Chuan; Grossman, Arthur R; Kundaje, Anshul; Greenleaf, William James Genome biology 35232465 2022 03 01
Cytosolic Delivery of Small Protein Scaffolds Enables Efficient Inhibition of Ras and Myc. Chan, Alexander; Wang, Hejia Henry; Haley, Rebecca M; Song, Cindy; Gonzalez-Martinez, David; Bugaj, Lukasz; Mitchell, Michael J; Tsourkas, Andrew Molecular pharmaceutics 35225618 2022 04 04
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Phase Ib Trial of the Combination of Imatinib and Binimetinib in Patients with Advanced Gastrointestinal Stromal Tumors (GIST). Chi, Ping; Qin, Li-Xuan; Camacho, Niedzica; Kelly, Ciara M; D'Angelo, Sandra P; Dickson, Mark A; Gounder, Mrinal M; Keohan, Mary Lou; Movva, Sujana; Nacev, Benjamin A; Rosenbaum, Evan; Thornton, Katherine A; Crago, Aimee M; Francis, Jasmine H; Martindale, Moriah; Phelan, Haley T; Biniakewitz, Matthew D; Lee, Cindy J; Singer, Samuel; Hwang, Sinchun; Berger, Michael F; Chen, Yu; Antonescu, Cristina R; Tap, William D Clinical cancer research : an official journal of the American Association for Cancer Research 35110417 2022 Feb 02
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Rational design of anti-inflammatory lipid nanoparticles for mRNA delivery. Zhang, Hanwen; Han, Xuexiang; Alameh, Mohamad-Gabriel; Shepherd, Sarah J; Padilla, Marshall S; Xue, Lulu; Butowska, Kamila; Weissman, Drew; Mitchell, Michael J Journal of biomedical materials research. Part A 35076171 2022 May
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Acute restraint stress redirects prefrontal cortex circuit function through mGlu5 receptor plasticity on somatostatin-expressing interneurons. Joffe, Max E; Maksymetz, James; Luschinger, Joseph R; Dogra, Shalini; Ferranti, Anthony S; Luessen, Deborah J; Gallinger, Isabel M; Xiang, Zixiu; Branthwaite, Hannah; Melugin, Patrick R; Williford, Kellie M; Centanni, Samuel W; Shields, Brenda C; Lindsley, Craig W; Calipari, Erin S; Siciliano, Cody A; Niswender, Colleen M; Tadross, Michael R; Winder, Danny G; Conn, P Jeffrey Neuron 35045338 2022 03 16
Human brain mapping with multithousand-channel PtNRGrids resolves spatiotemporal dynamics. Tchoe, Youngbin; Bourhis, Andrew M; Cleary, Daniel R; Stedelin, Brittany; Lee, Jihwan; Tonsfeldt, Karen J; Brown, Erik C; Siler, Dominic A; Paulk, Angelique C; Yang, Jimmy C; Oh, Hongseok; Ro, Yun Goo; Lee, Keundong; Russman, Samantha M; Ganji, Mehran; Galton, Ian; Ben-Haim, Sharona; Raslan, Ahmed M; Dayeh, Shadi A Science translational medicine 35044788 2022 01 19
Emergent intra-pair sex differences and organized behavior in pair bonded prairie voles (Microtus ochrogaster). Brusman, Liza E; Protter, David S W; Fultz, Allison C; Paulson, Maya U; Chapel, Gabriel D; Elges, Isaiah O; Cameron, Ryan T; Beery, Annaliese K; Donaldson, Zoe R Genes, brain, and behavior 35044090 2022 Jan 19
Sex differences in the reward value of familiar mates in prairie voles. Vahaba, Daniel M; Halstead, Emily R; Donaldson, Zoe R; Ahern, Todd H; Beery, Annaliese K Genes, brain, and behavior 35044087 2022 Mar
A single-cell atlas reveals shared and distinct immune responses and metabolism during SARS-CoV-2 and HIV-1 infections. Pan, Tony; Cao, Guoshuai; Tang, Erting; Zhao, Yu; Penaloza-MacMaster, Pablo; Fang, Yun; Huang, Jun bioRxiv : the preprint server for biology 35043114 2022 Jan 11
Domain-adaptive neural networks improve cross-species prediction of transcription factor binding. Cochran, Kelly; Srivastava, Divyanshi; Shrikumar, Avanti; Balsubramani, Akshay; Hardison, Ross C; Kundaje, Anshul; Mahony, Shaun Genome research 35042722 2022 03
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Phase II Trial of Imatinib Plus Binimetinib in Patients With Treatment-Naive Advanced Gastrointestinal Stromal Tumor. Chi, Ping; Qin, Li-Xuan; Nguyen, Bastien; Kelly, Ciara M; D'Angelo, Sandra P; Dickson, Mark A; Gounder, Mrinal M; Keohan, Mary L; Movva, Sujana; Nacev, Benjamin A; Rosenbaum, Evan; Thornton, Katherine A; Crago, Aimee M; Yoon, Sam; Ulaner, Gary; Yeh, Randy; Martindale, Moriah; Phelan, Haley T; Biniakewitz, Matthew D; Warda, Sarah; Lee, Cindy J; Berger, Michael F; Schultz, Nikolaus D; Singer, Samuel; Hwang, Sinchun; Chen, Yu; Antonescu, Cristina R; Tap, William D Journal of clinical oncology : official journal of the American Society of Clinical Oncology 35041493 2022 Jan 18
Fighting in a wasteland: deleterious metabolites and antitumor immunity. Watson, McLane J; Delgoffe, Greg M The Journal of clinical investigation 35040434 2022 01 18
Subcutaneous nanotherapy repurposes the immunosuppressive mechanism of rapamycin to enhance allogeneic islet graft viability. Burke, Jacqueline A; Zhang, Xiaomin; Bobbala, Sharan; Frey, Molly A; Bohorquez Fuentes, Carolina; Freire Haddad, Helena; Allen, Sean D; Richardson, Reese A K; Ameer, Guillermo A; Scott, Evan A Nature nanotechnology 35039683 2022 Mar
A role for community-level socioeconomic indicators in targeting tuberculosis screening interventions. Brooks, Meredith B; Jenkins, Helen E; Puma, Daniela; Tzelios, Christine; Millones, Ana Karina; Jimenez, Judith; Galea, Jerome T; Lecca, Leonid; Becerra, Mercedes C; Keshavjee, Salmaan; Yuen, Courtney M Scientific reports 35039612 2022 01 17
The preference for sugar over sweetener depends on a gut sensor cell. Buchanan, Kelly L; Rupprecht, Laura E; Kaelberer, M Maya; Sahasrabudhe, Atharva; Klein, Marguerita E; Villalobos, Jorge A; Liu, Winston W; Yang, Annabelle; Gelman, Justin; Park, Seongjun; Anikeeva, Polina; Bohórquez, Diego V Nature neuroscience 35027761 2022 Feb
Air pollution exposure disparities across US population and income groups. Jbaily, Abdulrahman; Zhou, Xiaodan; Liu, Jie; Lee, Ting-Hwan; Kamareddine, Leila; Verguet, Stéphane; Dominici, Francesca Nature 35022594 2022 01
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One Size Does Not Fit All: Diversifying Immune Function in the Skin. Naik, Shruti Journal of immunology (Baltimore, Md. : 1950) 35017212 2022 01 15
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Myocardial infarction reduces cardiac nociceptive neurotransmission through the vagal ganglia. Salavatian, Siamak; Hoang, Jonathan D; Yamaguchi, Naoko; Lokhandwala, Zulfiqar A; Swid, Mohammed Amer; Armour, J Andrew; Ardell, Jeffrey L; Vaseghi, Marmar JCI insight 35015733 2022 Jan 11
Polymer-Coated Extracellular Vesicles for Selective Codelivery of Chemotherapeutics and siRNA to Cancer Cells. Jhan, Yong-Yu; Palou Zuniga, Guillermo; Singh, Kanwar Abhay; Gaharwar, Akhilesh K; Alge, Daniel L; Bishop, Corey J ACS applied bio materials 35014481 2021 02 15
Designer Extracellular Vesicles Modulate Pro-Neuronal Cell Responses and Improve Intracranial Retention. Ortega-Pineda, Lilibeth; Sunyecz, Alec; Salazar-Puerta, Ana I; Rincon-Benavides, Maria Angelica; Alzate-Correa, Diego; Anaparthi, Amrita Lakshmi; Guilfoyle, Elizabeth; Mezache, Louisa; Struckman, Heather L; Duarte-Sanmiguel, Silvia; Deng, Binbin; McComb, Advanced healthcare materials 35014204 2022 03
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Prognostication in Acute Neurological Emergencies. Journal of stroke and cerebrovascular diseases : the official journal of National Stroke Association 35007934 2022 Mar
Dimensionless parameter predicts bacterial prodrug success. Holt, Brandon Alexander; Tuttle, McKenzie; Xu, Yilin; Su, Melanie; Røise, Joachim J; Wang, Xioajian; Murthy, Niren; Kwong, Gabriel A Molecular systems biology 35005851 2022 01
A flexible split prime editor using truncated reverse transcriptase improves dual-AAV delivery in mouse liver. Zheng, Chunwei; Liang, Shun-Qing; Liu, Bin; Liu, Pengpeng; Kwan, Suet-Yan; Wolfe, Scot A; Xue, Wen Molecular therapy : the journal of the American Society of Gene Therapy 34998953 2022 Jan 05
NOD-like receptor protein 3 activation causes spontaneous inflammation and fibrosis that mimics human NASH. Calcagno, David M; Chu, Angela; Gaul, Susanne; Taghdiri, Nika; Toomu, Avinash; Leszczynska, Aleksandra; Kaufmann, Benedikt; Papouchado, Bettina; Wree, Alexander; Geisler, Lukas; Hoffman, Hal M; Feldstein, Ariel E; King, Kevin R Hepatology (Baltimore, Md.) 34997987 2022 Jan 08
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Anatomy promotes neutral coexistence of strains in the human skin microbiome. Conwill, Arolyn; Kuan, Anne C; Damerla, Ravalika; Poret, Alexandra J; Baker, Jacob S; Tripp, A Delphine; Alm, Eric J; Lieberman, Tami D Cell host & microbe 34995483 2022 Feb 09
Impact of close interpersonal contact on COVID-19 incidence: Evidence from 1 year of mobile device data. Crawford, Forrest W; Jones, Sydney A; Cartter, Matthew; Dean, Samantha G; Warren, Joshua L; Li, Zehang Richard; Barbieri, Jacqueline; Campbell, Jared; Kenney, Patrick; Valleau, Thomas; Morozova, Olga Science advances 34995121 2022 Jan 07
3D-printed flexible organic light-emitting diode displays. Su, Ruitao; Park, Sung Hyun; Ouyang, Xia; Ahn, Song Ih; McAlpine, Michael C Science advances 34995118 2022 Jan 07
Ultrasound-mediated blood-brain barrier opening increases cell-free DNA in a time-dependent manner. Zhang, Daniel Y; Gould, Andrew; Happ, Hannah C; Youngblood, Mark W; Dmello, Crismita; Kang, Seong Jae; Canney, Michael; Stupp, Roger; Carvill, Gemma L; Sonabend, Adam M Neuro-oncology advances 34993480 2021 Jan-Dec
Mucin-mimetic glycan arrays integrating machine learning for analyzing receptor pattern recognition by influenza A viruses. Lucas, Taryn M; Gupta, Chitrak; Altman, Meghan O; Sanchez, Emi; Naticchia, Matthew R; Gagneux, Pascal; Singharoy, Abhishek; Godula, Kamil Chem 34993358 2021 Dec 09
Observation of robust energy transfer in the photosynthetic protein allophycocyanin using single-molecule pump-probe spectroscopy. Moya, Raymundo; Norris, Audrey C; Kondo, Toru; Schlau-Cohen, Gabriela S Nature chemistry 34992285 2022 02
Dense functional and molecular readout of a circuit hub in sensory cortex. Condylis, Cameron; Ghanbari, Abed; Manjrekar, Nikita; Bistrong, Karina; Yao, Shenqin; Yao, Zizhen; Nguyen, Thuc Nghi; Zeng, Hongkui; Tasic, Bosiljka; Chen, Jerry L Science (New York, N.Y.) 34990233 2022 01 07
Central Nervous System Control of Glucose Homeostasis: A Therapeutic Target for Type 2 Diabetes? Mirzadeh, Zaman; Faber, Chelsea L; Schwartz, Michael W Annual review of pharmacology and toxicology 34990204 2022 Jan 06
Interleukin-1β secretion induced by mucosa-associated gut commensal bacteria promotes intestinal barrier repair. Wu, Wan-Jung H; Kim, Myunghoo; Chang, Lin-Chun; Assie, Adrien; Saldana-Morales, Fatima B; Zegarra-Ruiz, Daniel F; Norwood, Kendra; Samuel, Buck S; Diehl, Gretchen E Gut microbes 34989321 2022 Jan-Dec
Evaluation of CRISPR gene-editing tools in zebrafish. Uribe-Salazar, José M; Kaya, Gulhan; Sekar, Aadithya; Weyenberg, KaeChandra; Ingamells, Cole; Dennis, Megan Y BMC genomics 34986794 2022 Jan 06
Four-dimensional nuclear speckle phase separation dynamics regulate proteostasis. Dion, William; Ballance, Heather; Lee, Jane; Pan, Yinghong; Irfan, Saad; Edwards, Casey; Sun, Michelle; Zhang, Jing; Zhang, Xin; Liu, Silvia; Zhu, Bokai Science advances 34985945 2022 Jan 07
Comprehensive structure and functional adaptations of the yeast nuclear pore complex. Akey, Christopher W; Singh, Digvijay; Ouch, Christna; Echeverria, Ignacia; Nudelman, Ilona; Varberg, Joseph M; Yu, Zulin; Fang, Fei; Shi, Yi; Wang, Junjie; Salzberg, Daniel; Song, Kangkang; Xu, Chen; Gumbart, James C; Suslov, Sergey; Unruh, Jay; Jaspersen, Sue L; Chait, Brian T; Sali, Andrej; Fernandez-Martinez, Javier; Ludtke, Steven J; Villa, Elizabeth; Rout, Michael P Cell 34982960 2022 01 20
Early peanut introduction wins over the HLA-DQA1*01:02 allele in the interplay between environment and genetics. Manohar, Monali; Nadeau, Kari Christine; Kasowski, Maya The Journal of clinical investigation 34981779 2022 01 04
Vaccination with BNT162b2 reduces transmission of SARS-CoV-2 to household contacts in Israel. Prunas, Ottavia; Warren, Joshua L; Crawford, Forrest W; Gazit, Sivan; Patalon, Tal; Weinberger, Daniel M; Pitzer, Virginia E medRxiv : the preprint server for health sciences 34981074 2021 Dec 20
Large-scale neural recordings call for new insights to link brain and behavior. Urai, Anne E; Doiron, Brent; Leifer, Andrew M; Churchland, Anne K Nature neuroscience 34980926 2022 01
Ultrasmall gold nanorod-polydopamine hybrids for enhanced photoacoustic imaging and photothermal therapy in second near-infrared window. Yim, Wonjun; Borum, Raina M; Zhou, Jiajing; Mantri, Yash; Wu, Zhuohong; Zhou, Jingcheng; Jin, Zhicheng; Creyer, Matthew; Jokerst, Jesse V Nanotheranostics 34976582 2022
Single cell transcriptomics in human osteoarthritis synovium and in silico deconvoluted bulk RNA sequencing. Huang, Z Y; Luo, Z Y; Cai, Y R; Chou, C-H; Yao, M L; Pei, F X; Kraus, V B; Zhou, Z K Osteoarthritis and cartilage 34971754 2022 Mar
Superior colliculus drives stimulus-evoked directionally biased saccades and attempted head movements in head-fixed mice. Zahler, Sebastian H; Taylor, David E; Wong, Joey Y; Adams, Julia M; Feinberg, Evan H eLife 34970968 2021 12 31
Robust T cell activation requires an eIF3-driven burst in T cell receptor translation. De Silva, Dasmanthie; Ferguson, Lucas; Chin, Grant H; Smith, Benjamin E; Apathy, Ryan A; Roth, Theodore L; Blaeschke, Franziska; Kudla, Marek; Marson, Alexander; Ingolia, Nicholas T; Cate, Jamie Hd eLife 34970966 2021 Dec 31
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Using geospatial models to map zero-dose children: factors associated with zero-dose vaccination status before and after a mass measles and rubella vaccination campaign in Southern province, Zambia. Arambepola, Rohan; Yang, Yangyupei; Hutchinson, Kyle; Mwansa, Francis Dien; Doherty, Julie Ann; Bwalya, Frazer; Ndubani, Phillimon; Musukwa, Gloria; Moss, William John; Wesolowski, Amy; Mutembo, Simon BMJ global health 34969682 2021 Dec
Substratum stiffness regulates Erk signaling dynamics through receptor-level control. Farahani, Payam E; Lemke, Sandra B; Dine, Elliot; Uribe, Giselle; Toettcher, Jared E; Nelson, Celeste M Cell reports 34965432 2021 12 28
Enhanced Photoacoustic Detection of Heparin in Whole Blood via Melanin Nanocapsules Carrying Molecular Agents. Yim, Wonjun; Takemura, Kathryn; Zhou, Jiajing; Zhou, Jingcheng; Jin, Zhicheng; Borum, Raina M; Xu, Ming; Cheng, Yong; He, Tengyu; Penny, William; Miller 3rd, Bill R; Jokerst, Jesse V ACS nano 34962765 2021 Dec 28
Association Between Immune Dysfunction and COVID-19 Breakthrough Infection After SARS-CoV-2 Vaccination in the US. JAMA internal medicine 34962505 2022 02 01
Targeted drug delivery strategies for precision medicines. Manzari, Mandana T; Shamay, Yosi; Kiguchi, Hiroto; Rosen, Neal; Scaltriti, Maurizio; Heller, Daniel A Nature reviews. Materials 34950512 2021 Apr
Precise genome editing across kingdoms of life using retron-derived DNA. Lopez, Santiago C; Crawford, Kate D; Lear, Sierra K; Bhattarai-Kline, Santi; Shipman, Seth L Nature chemical biology 34949838 2022 02
Aging disrupts circadian gene regulation and function in macrophages. Nature immunology 34949832 2022 02
Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide. Schiffer, Jodie A; Stumbur, Stephanie V; Seyedolmohadesin, Maedeh; Xu, Yuyan; Serkin, William T; McGowan, Natalie G; Banjo, Oluwatosin; Torkashvand, Mahdi; Lin, Albert; Hosea, Ciara N; Assié, Adrien; Samuel, Buck S; O'Donnell, Michael P; Venkatachalam, Vivek; Apfeld, Javier PLoS pathogens 34941962 2021 12
TET deficiency perturbs mature B cell homeostasis and promotes oncogenesis associated with accumulation of G-quadruplex and R-loop structures. Shukla, Vipul; Samaniego-Castruita, Daniela; Dong, Zhen; González-Avalos, Edahí; Yan, Qingqing; Sarma, Kavitha; Rao, Anjana Nature immunology 34937926 2022 01
Virally encoded connectivity transgenic overlay RNA sequencing (VECTORseq) defines projection neurons involved in sensorimotor integration. Cheung, Victoria; Chung, Philip; Bjorni, Max; Shvareva, Varvara A; Lopez, Yesenia C; Feinberg, Evan H Cell reports 34936877 2021 12 21
Stress ball morphogenesis: How the lizard builds its lung. Palmer, Michael A; Nerger, Bryan A; Goodwin, Katharine; Sudhakar, Anvitha; Lemke, Sandra B; Ravindran, Pavithran T; Toettcher, Jared E; Košmrlj, Andrej; Nelson, Celeste M Science advances 34936466 2021 Dec 24
Multiplexed Detection of Secreted Cytokines at near-Molecular Resolution Elucidates Macrophage Polarization Heterogeneity. Herrera, Vanessa; Hsu, Ssu-Chieh Joseph; Naveen, Veena Y; Liu, Wendy F; Haun, Jered B Analytical chemistry 34936345 2022 01 18
Rational Design of Hydrogel Networks with Dynamic Mechanical Properties to Mimic Matrix Remodeling. Wiley, Katherine L; Sutherland, Bryan P; Ogunnaike, Babatunde A; Kloxin, April M Advanced healthcare materials 34936227 2022 04
TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion. Shakiba, Mojdeh; Zumbo, Paul; Espinosa-Carrasco, Gabriel; Menocal, Laura; Dündar, Friederike; Carson, Sandra E; Bruno, Emmanuel M; Sanchez-Rivera, Francisco J; Lowe, Scott W; Camara, Steven; Koche, Richard P; Reuter, Vincent P; Socci, Nicholas D; Whitlock, Benjamin; Tamzalit, Fella; Huse, Morgan; Hellmann, Matthew D; Wells, Daniel K; Defranoux, Nadine A; Betel, Doron; Philip, Mary; Schietinger, Andrea The Journal of experimental medicine 34935874 2022 02 07
Synthesis and application of POLYseq for profiling human liver organoids. Dunn, Andrew W; Cai, Yuqi; Iwasawa, Kentaro; Kimura, Masaki; Takebe, Takanori STAR protocols 34934958 2021 12 17
Variable-Temperature Native Mass Spectrometry for Studies of Protein Folding, Stabilities, Assembly, and Molecular Interactions. Laganowsky, Arthur; Clemmer, David E; Russell, David H Annual review of biophysics 34932911 2022 May 09
Anthrax toxins regulate pain signaling and can deliver molecular cargoes into ANTXR2+ DRG sensory neurons. Yang, Nicole J; Isensee, Jörg; Neel, Dylan V; Quadros, Andreza U; Zhang, Han-Xiong Bear; Lauzadis, Justas; Liu, Sai Man; Shiers, Stephanie; Belu, Andreea; Palan, Shilpa; Marlin, Sandra; Maignel, Jacquie; Kennedy-Curran, Angela; Tong, Victoria S; Moayeri, Mahtab; Röderer, Pascal; Nitzsche, Anja; Lu, Mike; Pentelute, Bradley L; Brüstle, Oliver; Tripathi, Vineeta; Foster, Keith A; Price, Theodore J; Collier, R John; Leppla, Stephen H; Puopolo, Michelino; Bean, Bruce P; Cunha, Thiago M; Hucho, Tim; Chiu, Isaac M Nature neuroscience 34931070 2022 02
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Human Spinal Organoid-on-a-Chip to Model Nociceptive Circuitry for Pain Therapeutics Discovery. Ao, Zheng; Cai, Hongwei; Wu, Zhuhao; Krzesniak, Jonathan; Tian, Chunhui; Lai, Yvonne Y; Mackie, Ken; Guo, Feng Analytical chemistry 34928595 2022 Jan 18
Entropy in the Molecular Recognition of Membrane Protein-Lipid Interactions. Qiao, Pei; Schrecke, Samantha; Walker, Thomas; McCabe, Jacob W; Lyu, Jixing; Zhu, Yun; Zhang, Tianqi; Kumar, Smriti; Clemmer, David; Russell, David H; Laganowsky, Arthur The journal of physical chemistry letters 34928154 2021 Dec 30
A Change from Kinetic to Thermodynamic Control Enables trans-Selective Stereochemical Editing of Vicinal Diols. Zhang, Yu-An; Gu, Xin; Wendlandt, Alison E Journal of the American Chemical Society 34928134 2022 01 12
A proximity labeling protocol to probe proximity interactions in C. elegans. Sanchez, Ariana D; Feldman, Jessica L STAR protocols 34927095 2021 12 17
Polymer Chemistry for Haptics, Soft Robotics, and Human-Machine Interfaces. Schara, Steven; Blau, Rachel; Church, Derek C; Pokorski, Jonathan K; Lipomi, Darren J Advanced functional materials 34924911 2021 Sep 23
Tumor immunology CRISPR screening: present, past, and future. Dong, Matthew B; Tang, Kaiyuan; Zhou, Xiaoyu; Zhou, Jingjia J; Chen, Sidi Trends in cancer 34920978 2022 Mar
Scale-type-specific requirement for the mosquito Aedes aegypti Spindle-F homologue by regulating microtubule organization. Djokic, Sanja; Bakhrat, Anna; Li, Ming; Akbari, Omar S; Abdu, Uri Insect molecular biology 34919304 2022 Apr
Confocal Imaging of Single-Cell Signaling in Orthotopic Models of Ovarian Cancer. Matvey, Dylan O; Ng, Thomas S C; Miller, Miles A Methods in molecular biology (Clifton, N.J.) 34918302 2022
Design Principles for Compact, Backdrivable Actuation in Partial-Assist Powered Knee Orthoses. Zhu, Hanqi; Nesler, Christopher; Divekar, Nikhil; Peddinti, Vamsi; Gregg, Robert D IEEE/ASME transactions on mechatronics : a joint publication of the IEEE Industrial Electronics Society and the ASME Dynamic Systems and Control Division 34916771 2021 Dec
Existing human mobility data sources poorly predicted the spatial spread of SARS-CoV-2 in Madagascar. Ramiadantsoa, Tanjona; Metcalf, C Jessica E; Raherinandrasana, Antso Hasina; Randrianarisoa, Santatra; Rice, Benjamin L; Wesolowski, Amy; Randriatsarafara, Fidiniaina Mamy; Rasambainarivo, Fidisoa Epidemics 34915300 2022 03
Wisconsin dairy farm worker perceptions and practices related to antibiotic use, resistance, and infection prevention using a systems engineering framework. Kates, Ashley E; Knobloch, Mary Jo; Konkel, Ali; Young, Amanda; Steinberger, Andrew; Shutske, John; Ruegg, Pamela L; Sethi, Ajay K; Goldberg, Tony; Leite de Campos, Juliana; Suen, Garret; Safdar, Nasia PloS one 34914704 2021
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Cheating the Cheater: Suppressing False-Positive Enrichment during Biosensor-Guided Biocatalyst Engineering. Trivedi, Vikas D; Mohan, Karishma; Chappell, Todd C; Mays, Zachary J S; Nair, Nikhil U ACS synthetic biology 34914365 2022 01 21
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Nanoscale Structures and Materials from the Self-assembly of Polypeptides and DNA. Bernal-Chanchavac, Julio; Al-Amin, Md; Stephanopoulos, Nicholas Current topics in medicinal chemistry 34911426 2022
Controlling the polarization of chiral dipolar emission with a spherical dielectric nanoantenna. Yao, Kan; Zheng, Yuebing The Journal of chemical physics 34911301 2021 Dec 14
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Antigenic evolution of human influenza H3N2 neuraminidase is constrained by charge balancing. Wang, Yiquan; Lei, Ruipeng; Nourmohammad, Armita; Wu, Nicholas C eLife 34878407 2021 12 08
Entropy-regularized deconvolution of cellular cryotransmission electron tomograms. Croxford, Matthew; Elbaum, Michael; Arigovindan, Muthuvel; Kam, Zvi; Agard, David; Villa, Elizabeth; Sedat, John Proceedings of the National Academy of Sciences of the United States of America 34876518 2021 12 14
Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq. Engel, Krysta L; Lo, Hei-Yong G; Goering, Raeann; Li, Ying; Spitale, Robert C; Taliaferro, J Matthew Nucleic acids research 34875090 2022 Feb 28
A large-scale systematic survey of SARS-CoV-2 antibodies reveals recurring molecular features. Wang, Yiquan; Yuan, Meng; Peng, Jian; Wilson, Ian A; Wu, Nicholas C bioRxiv : the preprint server for biology 34873599 2021 Nov 30
The germinal centre B cell response to SARS-CoV-2. Laidlaw, Brian J; Ellebedy, Ali H Nature reviews. Immunology 34873279 2022 01
Shiftless inhibits flavivirus replication in vitro and is neuroprotective in a mouse model of Zika virus pathogenesis. Hanners, Natasha W; Mar, Katrina B; Boys, Ian N; Eitson, Jennifer L; De La Cruz-Rivera, Pamela C; Richardson, R Blake; Fan, Wenchun; Wight-Carter, Mary; Schoggins, John W Proceedings of the National Academy of Sciences of the United States of America 34873063 2021 12 07
Therapeutic Interventions Targeting Innate Immune Receptors: A Balancing Act. Cao, Xujun; Cordova, Anthony F; Li, Lingyin Chemical reviews 34870969 2022 Feb 09
Generating Trophoblast Stem Cells from Human Naïve Pluripotent Stem Cells. Dong, Chen; Theunissen, Thorold W Methods in molecular biology (Clifton, N.J.) 34870832 2022
Induction of Human Naïve Pluripotency Using 5i/L/A Medium. Fischer, Laura A; Khan, Shafqat A; Theunissen, Thorold W Methods in molecular biology (Clifton, N.J.) 34870827 2022
Targeting the Extracellular Matrix in Traumatic Brain Injury Increases Signal Generation from an Activity-Based Nanosensor. Kandell, Rebecca M; Kudryashev, Julia A; Kwon, Ester J ACS nano 34870408 2021 12 28
Pi-stacking Enhances Stability, Scalability of Formation, Control over Flexibility and Circulation Time of Polymeric Filaments. Li, Sophia; Bobbala, Sharan; Vincent, Michael P; Modak, Mallika; Liu, Yugang; Scott, Evan A Advanced nanobiomed research 34870281 2021 Nov
Improving the Performance of Risk Adjustment Systems: Constrained Regressions, Reinsurance, and Variable Selection. McGuire, Thomas G; Zink, Anna L; Rose, Sherri American journal of health economics 34869790 2021
Considerations and recent advances in nanoscale interfaces with neuronal and cardiac networks. Tchoe, Youngbin; Lee, Jihwan; Liu, Ren; Bourhis, Andrew M; Vatsyayan, Ritwik; Tonsfeldt, Karen J; Dayeh, Shadi A Applied physics reviews 34868443 2021 Dec
The Parental Dilemma: How Evolution of Diverse Strategies for Infant Care Informs Social Behavior Circuits. Autry, Anita E; O'Connell, Lauren A Frontiers in neural circuits 34867211 2021
Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell-like blasts in KMT2A-rearranged leukemia. Chen, Changya; Yu, Wenbao; Alikarami, Fatemeh; Qiu, Qi; Chen, Chia-Hui; Flournoy, Jennifer; Gao, Peng; Uzun, Yasin; Fang, Li; Davenport, James W; Hu, Yuxuan; Zhu, Qin; Wang, Kai; Libbrecht, Clara; Felmeister, Alex; Rozich, Isaiah; Ding, Yang-Yang; Hunger, Stephen P; Felix, Carolyn A; Wu, Hao; Brown, Patrick A; Guest, Erin M; Barrett, David M; Bernt, Kathrin M; Tan, Kai Blood 34864916 2022 Apr 07
Targeting cancer metabolism in the era of precision oncology. Stine, Zachary E; Schug, Zachary T; Salvino, Joseph M; Dang, Chi V Nature reviews. Drug discovery 34862480 2022 Feb
Coordinated mis-splicing of TMEM14C and ABCB7 causes ring sideroblast formation in SF3B1-mutant myelodysplastic syndrome. Clough, Courtnee A; Pangallo, Joseph; Sarchi, Martina; Ilagan, Janine O; North, Khrystyna; Bergantinos, Rochelle; Stolla, Massiel Chavez; Naru, Jasmine; Nugent, Patrick; Kim, Eunhee; Stirewalt, Derek L; Subramaniam, Arvind R; Abdel-Wahab, Omar; Abkowitz, Janis L; Bradley, Robert K; Doulatov, Sergei Blood 34861039 2021 Dec 03
A multi-functional microfluidic device compatible with widefield and light sheet microscopy. Moore, Regan P; O'Shaughnessy, Ellen C; Shi, Yu; Nogueira, Ana T; Heath, Katelyn M; Hahn, Klaus M; Legant, Wesley R Lab on a chip 34859808 2021 12 21
Association of clonal hematopoiesis with chronic obstructive pulmonary disease. Miller, Peter G; Qiao, Dandi; Rojas-Quintero, Joselyn; Honigberg, Michael C; Sperling, Adam S; Gibson, Christopher J; Bick, Alexander G; Niroula, Abhishek; McConkey, Marie E; Sandoval, Brittany; Miller, Brian C; Shi, Weiwei; Viswanathan, Kaushik; Leventha Blood 34855941 2022 01 20
Cyclin F drives proliferation through SCF-dependent degradation of the retinoblastoma-like tumor suppressor p130/RBL2. Enrico, Taylor P; Stallaert, Wayne; Wick, Elizaveta T; Ngoi, Peter; Wang, Xianxi; Rubin, Seth M; Brown, Nicholas G; Purvis, Jeremy E; Emanuele, Michael J eLife 34851822 2021 12 01
ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome. Baker, Alexander T; Boyd, Ryan J; Sarkar, Daipayan; Teijeira-Crespo, Alicia; Chan, Chun Kit; Bates, Emily; Waraich, Kasim; Vant, John; Wilson, Eric; Truong, Chloe D; Lipka-Lloyd, Magdalena; Fromme, Petra; Vermaas, Josh; Williams, Dewight; Machiesky, LeeAnn; Heurich, Meike; Nagalo, Bolni M; Coughlan, Lynda; Umlauf, Scott; Chiu, Po-Lin; Rizkallah, Pierre J; Cohen, Taylor S; Parker, Alan L; Singharoy, Abhishek; Borad, Mitesh J Science advances 34851659 2021 Dec 03
Optical tweezers in single-molecule biophysics. Bustamante, Carlos J; Chemla, Yann R; Liu, Shixin; Wang, Michelle D Nature reviews. Methods primers 34849486 2021
An autoimmune stem-like CD8 T cell population drives type 1 diabetes. Gearty, Sofia V; Dündar, Friederike; Zumbo, Paul; Espinosa-Carrasco, Gabriel; Shakiba, Mojdeh; Sanchez-Rivera, Francisco J; Socci, Nicholas D; Trivedi, Prerak; Lowe, Scott W; Lauer, Peter; Mohibullah, Neeman; Viale, Agnes; DiLorenzo, Teresa P; Betel, Doron; Schietinger, Andrea Nature 34847567 2022 02
Insight into the Phospholipid-Binding Preferences of Kir3.4. Qiao, Pei; Schrecke, Samantha; Lyu, Jixing; Zhu, Yun; Zhang, Tianqi; Benavides, Amanda; Laganowsky, Arthur Biochemistry 34846128 2021 12 21
A metagenomic DNA sequencing assay that is robust against environmental DNA contamination. Mzava, Omary; Cheng, Alexandre Pellan; Chang, Adrienne; Smalling, Sami; Kounatse, Liz-Audrey Djomnang; Lenz, Joan; Longman, Randy; Steadman, Amy; Salvatore, Mirella; Suthanthiran, Manikkam; Lee, John R; Mason, Christopher E; Dadhania, Darshana; De Vlaminck, Iwijn bioRxiv : the preprint server for biology 34845444 2021 Nov 23
Melanopsin phototransduction: beyond canonical cascades. Contreras, Ely; Nobleman, Alexis P; Robinson, Phyllis R; Schmidt, Tiffany M The Journal of experimental biology 34842918 2021 12 01
Development of allogeneic HSC-engineered iNKT cells for off-the-shelf cancer immunotherapy. Li, Yan-Ruide; Zhou, Yang; Kim, Yu Jeong; Zhu, Yanni; Ma, Feiyang; Yu, Jiaji; Wang, Yu-Chen; Chen, Xianhui; Li, Zhe; Zeng, Samuel; Wang, Xi; Lee, Derek; Ku, Josh; Tsao, Tasha; Hardoy, Christian; Huang, Jie; Cheng, Donghui; Montel-Hagen, Amélie; Seet, Christopher S; Crooks, Gay M; Larson, Sarah M; Sasine, Joshua P; Wang, Xiaoyan; Pellegrini, Matteo; Ribas, Antoni; Kohn, Donald B; Witte, Owen; Wang, Pin; Yang, Lili Cell reports. Medicine 34841295 2021 11 16
Mapping the subcortical connectivity of the human default mode network. Li, Jian; Curley, William H; Guerin, Bastien; Dougherty, Darin D; Dalca, Adrian V; Fischl, Bruce; Horn, Andreas; Edlow, Brian L NeuroImage 34838949 2021 12 15
Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder. Borges-Monroy, Rebeca; Chu, Chong; Dias, Caroline; Choi, Jaejoon; Lee, Soohyun; Gao, Yue; Shin, Taehwan; Park, Peter J; Walsh, Christopher A; Lee, Eunjung Alice Mobile DNA 34838103 2021 Nov 27
Genome annotation with long RNA reads reveals new patterns of gene expression and improves single-cell analyses in an ant brain. Shields, Emily J; Sorida, Masato; Sheng, Lihong; Sieriebriennikov, Bogdan; Ding, Long; Bonasio, Roberto BMC biology 34838024 2021 Nov 27
Single-Cell Technologies to Study Phenotypic Heterogeneity and Bacterial Persisters. Hare, Patricia J; LaGree, Travis J; Byrd, Brandon A; DeMarco, Angela M; Mok, Wendy W K Microorganisms 34835403 2021 Nov 01
3D Organoids: An Untapped Platform for Studying Host-Microbiome Interactions in Esophageal Cancers. Flashner, Samuel; Yan, Kelley S; Nakagawa, Hiroshi Microorganisms 34835308 2021 Oct 20
IRF3 inhibits IFN-γ-mediated restriction of intracellular pathogens in macrophages independently of IFNAR. Maciag, Karolina; Raychowdhury, Raktima; Smith, Karen; Schneider, Alexis M; Coers, Jörn; Mumbach, Maxwell R; Schwartz, Schraga; Hacohen, Nir Journal of leukocyte biology 34826345 2022 08
Anterograde transneuronal tracing and genetic control with engineered yellow fever vaccine YFV-17D. Li, Elizabeth; Guo, Jun; Oh, So Jung; Luo, Yi; Oliveros, Heankel Cantu; Du, Wenqin; Arano, Rachel; Kim, Yerim; Chen, Yuh-Tarng; Eitson, Jennifer; Lin, Da-Ting; Li, Ying; Roberts, Todd; Schoggins, John W; Xu, Wei Nature methods 34824475 2021 Nov 25
Structures of tweety homolog proteins TTYH2 and TTYH3 reveal a Ca2+-dependent switch from intra- to intermembrane dimerization. Li, Baobin; Hoel, Christopher M; Brohawn, Stephen G Nature communications 34824283 2021 Nov 25
Challenges in evaluating risks and policy options around endemic establishment or elimination of novel pathogens.