Metabolomics
Metabolomics
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date |
|---|---|---|---|---|---|
| Mass Spectrometry Adduct Calculator. | Blumer MR, Chang CH, Brayfindley E, Nunez JR, Colby SM, Renslow RS, Metz TO | Journal of chemical information and modeling | 34842435 | J Chem Inf Model | 2021 Dec 27 |
| Ceramide synthase 2 deletion decreases the infectivity of HIV-1. | Barklis E, Alfadhli A, Kyle JE, Bramer LM, Bloodsworth KJ, Barklis RL, Leier HC, Petty RM, Zelnik ID, Metz TO, Futerman AH, Tafesse FG | The Journal of biological chemistry | 33515546 | J Biol Chem | 2021 Jan-Jun |
| CyProduct: A Software Tool for Accurately Predicting the Byproducts of Human Cytochrome P450 Metabolism. | Tian S, Cao X, Greiner R, Li C, Guo A, Wishart DS | Journal of chemical information and modeling | 34038112 | J Chem Inf Model | 2021 Jun 28 |
| BioTransformer 3.0-a web server for accurately predicting metabolic transformation products. | Wishart DS, Tian S, Allen D, Oler E, Peters H, Lui VW, Gautam V, Djoumbou-Feunang Y, Greiner R, Metz TO | Nucleic acids research | 35536252 | Nucleic Acids Res | 2022 Jul 5 |
| ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries. | Colby SM, Thomas DG, Nuñez JR, Baxter DJ, Glaesemann KR, Brown JM, Pirrung MA, Govind N, Teeguarden JG, Metz TO, Renslow RS | Analytical chemistry | 30741529 | Anal Chem | 2019 Apr 2 |
| DEIMoS GUI: An Open-Source User Interface for a High-Dimensional Mass Spectrometry Data Processing Tool. | Oostrom MT, Colby SM, Metz TO | Journal of chemical information and modeling | 38412257 | J Chem Inf Model | 2024 Mar 11 |
| Introducing 'identification probability' for automated and transferable assessment of metabolite identification confidence in metabolomics and related studies. | Metz TO, Chang CH, Gautam V, Anjum A, Tian S, Wang F, Colby SM, Nunez JR, Blumer MR, Edison AS, Fiehn O, Jones DP, Li S, Morgan ET, Patti GJ, Ross DH, Shapiro MR, Williams AJ, Wishart DS | bioRxiv : the preprint server for biology | 39131324 | bioRxiv | 2024 Jul 31 |
| New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells. | Couvillion SP , Zhu Y , Nagy G , Adkins JN , Ansong C , Renslow RS , Piehowski PD , Ibrahim YM , Kelly RT , Metz TO | The Analyst | 30507980 | Analyst | 2019 Jan 28 |
| Exploring the Impacts of Conformer Selection Methods on Ion Mobility Collision Cross Section Predictions. | Nielson FF, Colby SM, Thomas DG, Renslow RS, Metz TO | Analytical chemistry | 33606495 | Anal Chem | 2021 Mar 2 |
| CFM-ID 4.0 - a web server for accurate MS-based metabolite identification. | Wang F, Allen D, Tian S, Oler E, Gautam V, Greiner R, Metz TO, Wishart DS | Nucleic acids research | 35610037 | Nucleic Acids Res | 2022 Jul 5 |
| Quantum Chemistry Calculations for Metabolomics. | Borges RM, Colby SM, Das S, Edison AS, Fiehn O, Kind T, Lee J, Merrill AT, Merz KM Jr, Metz TO, Nunez JR, Tantillo DJ, Wang LP, Wang S, Renslow RS | Chemical reviews | 33979149 | Chem Rev | 2021 May 26 |
| Correction to "Chespa: Streamlining Expansive Chemical Space Evaluation of Molecular Sets". | Nuñez JR, Mcgrady M, Yesiltepe Y, Renslow RS, Metz TO | Journal of chemical information and modeling | 33871993 | J Chem Inf Model | 2021 May 24 |
| Emerging technologies and their impact on regulatory science. | Anklam E, Bahl MI, Ball R, Beger RD, Cohen J, Fitzpatrick S, Girard P, Halamoda-Kenzaoui B, Hinton D, Hirose A, Hoeveler A, Honma M, Hugas M, Ishida S, Kass GE, Kojima H, Krefting I, Liachenko S, Liu Y, Masters S, Marx U, McCarthy T, Mercer T, Patri A, Pelaez C, Pirmohamed M, Platz S, Ribeiro AJ, Rodricks JV, Rusyn I, Salek RM, Schoonjans R, Silva P, Svendsen CN, Sumner S, Sung K, Tagle D, Tong L, Tong W, Eijnden-van-Raaij JVD, Vary N, Wang T, Waterton J, Wang M, Wen H, Wishart D, Yuan Y, Slikker W Jr | Experimental biology and medicine (Maywood, N.J.) | 34783606 | Exp Biol Med (Maywood) | 2022 Jan |
| Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. | Nielson FF, Kay B, Young SJ, Colby SM, Renslow RS, Metz TO | Metabolites | 36677030 | Metabolites | 2023 Jan 9 |
| metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics. | Habra H, Meijer JL, Shen T, Fiehn O, Gaul DA, Fernández FM, Rempfert KR, Metz TO, Peterson KE, Evans CR, Karnovsky A | Metabolites | 38393017 | Metabolites | 2024 Feb 15 |
| DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data. | Colby SM, Chang CH, Bade JL, Nunez JR, Blumer MR, Orton DJ, Bloodsworth KJ, Nakayasu ES, Smith RD, Ibrahim YM, Renslow RS, Metz TO | Analytical chemistry | 35430813 | Anal Chem | 2022 Apr 26 |
| Who Is Metabolizing What? Discovering Novel Biomolecules in the Microbiome and the Organisms Who Make Them. | Couvillion SP, Agrawal N, Colby SM, Brandvold KR, Metz TO | Frontiers in cellular and infection microbiology | 32850487 | Front Cell Infect Microbiol | 2020 |
| CFM-ID 4.0: More Accurate ESI-MS/MS Spectral Prediction and Compound Identification. | Wang F, Liigand J, Tian S, Arndt D, Greiner R, Wishart DS | Analytical chemistry | 34403256 | Anal Chem | 2021 Aug 31 |
| Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples. | Nuñez JR, Colby SM, Thomas DG, Tfaily MM, Tolic N, Ulrich EM, Sobus JR, Metz TO, Teeguarden JG, Renslow RS | Journal of chemical information and modeling | 31430141 | J Chem Inf Model | 2019 Sep 23 |
| A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants. | Farley SE, Kyle JE, Leier HC, Bramer LM, Weinstein JB, Bates TA, Lee JY, Metz TO, Schultz C, Tafesse FG | Nature communications | 35715395 | Nat Commun | 2022 Jun 17 |
| An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated NMR chemical shifts. | Yesiltepe Y, Govind N, Metz TO, Renslow RS | Journal of cheminformatics | 36138446 | J Cheminform | 2022 Sep 22 |
| AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry-mass spectrometry. | Lee JY, Bilbao A, Conant CR, Bloodsworth KJ, Orton DJ, Zhou M, Wilson JW, Zheng X, Webb IK, Li A, Hixson KK, Fjeldsted JC, Ibrahim YM, Payne SH, Jansson C, Smith RD, Metz TO | Bioinformatics (Oxford, England) | 34145874 | Bioinformatics | 2021 Nov 18 |
| A Practical Guide to Metabolomics Software Development. | Chang HY, Colby SM, Du X, Gomez JD, Helf MJ, Kechris K, Kirkpatrick CR, Li S, Patti GJ, Renslow RS, Subramaniam S, Verma M, Xia J, Young JD | Analytical chemistry | 33467846 | Anal Chem | 2021 Feb 2 |
| SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes. | Wojcik R, Nagy G, Attah IK, Webb IK, Garimella SVB, Weitz KK, Hollerbach A, Monroe ME, Ligare MR, Nielson FF, Norheim RV, Renslow RS, Metz TO, Ibrahim YM, Smith RD | Analytical chemistry | 31450886 | Anal Chem | 2019 Sep 17 |
| Introducing "Identification Probability" for Automated and Transferable Assessment of Metabolite Identification Confidence in Metabolomics and Related Studies. | Metz TO, Chang CH, Gautam V, Anjum A, Tian S, Wang F, Colby SM, Nunez JR, Blumer MR, Edison AS, Fiehn O, Jones DP, Li S, Morgan ET, Patti GJ, Ross DH, Shapiro MR, Williams AJ, Wishart DS | Analytical chemistry | 39699939 | Anal Chem | 2025 Jan 14 |
| Long-Term Metabolomics Reference Material. | Gouveia GJ, Shaver AO, Garcia BM, Morse AM, Andersen EC, Edison AS, McIntyre LM | Analytical chemistry | 34156835 | Anal Chem | 2021 Jul 6 |
| NMR: Unique Strengths That Enhance Modern Metabolomics Research. | Edison AS, Colonna M, Gouveia GJ, Holderman NR, Judge MT, Shen X, Zhang S | Analytical chemistry | 33180470 | Anal Chem | 2021 Jan 12 |
| CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics. | Rainey MA, Watson CA, Asef CK, Foster MR, Baker ES, Fernández FM | Analytical chemistry | 36473057 | Anal Chem | 2022 Dec 20 |
| Sex-specificity of the C. elegans metabolome. | Burkhardt RN, Artyukhin AB, Aprison EZ, Curtis BJ, Fox BW, Ludewig AH, Palomino DF, Luo J, Chaturbedi A, Panda O, Wrobel CJJ, Baumann V, Portman DS, Lee SS, Ruvinsky I, Schroeder FC | Nature communications | 36658169 | Nat Commun | 2023 Jan 19 |
| Correlations Between LC-MS/MS-Detected Glycomics and NMR-Detected Metabolomics in Caenorhabditis elegans Development. | Sheikh MO, Tayyari F, Zhang S, Judge MT, Weatherly DB, Ponce FV, Wells L, Edison AS | Frontiers in molecular biosciences | 31316996 | Front Mol Biosci | 2019 |
| Practical Guidelines for (13)C-Based NMR Metabolomics. | Edison AS, Le Guennec A, Delaglio F, Kupče Ē | Methods in molecular biology (Clifton, N.J.) | 31463840 | Methods Mol Biol | 2019 |
| Combinatorial Assembly of Modular Glucosides via Carboxylesterases Regulates C. elegans Starvation Survival. | Wrobel CJJ, Yu J, Rodrigues PR, Ludewig AH, Curtis BJ, Cohen SM, Fox BW, O'Donnell MP, Sternberg PW, Schroeder FC | Journal of the American Chemical Society | 34460264 | J Am Chem Soc | 2021 Sep 15 |
| Mass Spectrometry-Based Non-targeted Metabolic Profiling for Disease Detection: Recent Developments. | Zang X, Monge ME, Fernández FM | Trends in analytical chemistry : TRAC | 32831436 | Trends Analyt Chem | 2019 Sep |
| Computer-aided drug design, quantum-mechanical methods for biological problems. | Manathunga M, Götz AW, Merz KM Jr | Current opinion in structural biology | 35779437 | Curr Opin Struct Biol | 2022 Aug |
| Molecular Gas-Phase Conformational Ensembles. | Das S, Merz KM Jr | Journal of chemical information and modeling | 38206321 | J Chem Inf Model | 2024 Feb 12 |
| Comparison of High-Resolution Fourier Transform Mass Spectrometry Platforms for Putative Metabolite Annotation. | Huang D, Bouza M, Gaul DA, Leach FE 3rd, Amster IJ, Schroeder FC, Edison AS, Fernández FM | Analytical chemistry | 34460220 | Anal Chem | 2021 Sep 14 |
| Challenges in Identifying the Dark Molecules of Life. | Monge ME, Dodds JN, Baker ES, Edison AS, Fernández FM | Annual review of analytical chemistry (Palo Alto, Calif.) | 30883183 | Annu Rev Anal Chem (Palo Alto Calif) | 2019 Jun 12 |
| Triboelectric Nanogenerator Ion Mobility-Mass Spectrometry for In-Depth Lipid Annotation. | Bouza M, Li Y, Wang AC, Wang ZL, Fernández FM | Analytical chemistry | 33720699 | Anal Chem | 2021 Apr 6 |
| Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. | Alseekh S, Aharoni A, Brotman Y, Contrepois K, D'Auria J, Ewald J, C Ewald J, Fraser PD, Giavalisco P, Hall RD, Heinemann M, Link H, Luo J, Neumann S, Nielsen J, Perez de Souza L, Saito K, Sauer U, Schroeder FC, Schuster S, Siuzdak G, Skirycz A, Sumner LW, Snyder MP, Tang H, Tohge T, Wang Y, Wen W, Wu S, Xu G, Zamboni N, Fernie AR | Nature methods | 34239102 | Nat Methods | 2021 Jul |
| AutoGraph: Autonomous Graph-Based Clustering of Small-Molecule Conformations. | Tanemura KA, Das S, Merz KM Jr | Journal of chemical information and modeling | 33780248 | J Chem Inf Model | 2021 Apr 26 |
| Culture and Assay of Large-Scale Mixed-Stage Caenorhabditis elegans Populations. | Shaver AO, Gouveia GJ, Kirby PS, Andersen EC, Edison AS | Journal of visualized experiments : JoVE | 34028439 | J Vis Exp | 2021 May 5 |
| Role of UDP-Glycosyltransferase (ugt) Genes in Detoxification and Glycosylation of 1-Hydroxyphenazine (1-HP) in Caenorhabditis elegans. | Asif MZ, Nocilla KA, Ngo L, Shah M, Smadi Y, Hafeez Z, Parnes M, Manson A, Glushka JN, Leach FE 3rd, Edison AS | Chemical research in toxicology | 38488606 | Chem Res Toxicol | 2024 Apr 15 |
| Rapid and Automated Ab Initio Metabolite Collisional Cross Section Prediction from SMILES Input. | Das S, Dinpazhoh L, Tanemura KA, Merz KM Jr | Journal of chemical information and modeling | 37548575 | J Chem Inf Model | 2023 Aug 28 |
| An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics. | Shaver AO, Garcia BM, Gouveia GJ, Morse AM, Liu Z, Asef CK, Borges RM, Leach FE 3rd, Andersen EC, Amster IJ, Fernández FM, Edison AS, McIntyre LM | Frontiers in molecular biosciences | 36438654 | Front Mol Biosci | 2022 |
| Eliminating the Deadwood: A Machine Learning Model for CCS Knowledge-Based Conformational Focusing for Lipids. | Keng M, Merz KM Jr | Journal of chemical information and modeling | 39378407 | J Chem Inf Model | 2024 Oct 28 |
| International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis. | Thompson JW, Adams KJ, Adamski J, Asad Y, Borts D, Bowden JA, Byram G, Dang V, Dunn WB, Fernandez F, Fiehn O, Gaul DA, Hühmer AF, Kalli A, Koal T, Koeniger S, Mandal R, Meier F, Naser FJ, O'Neil D, Pal A, Patti GJ, Pham-Tuan H, Prehn C, Raynaud FI, Shen T, Southam AD, St John-Williams L, Sulek K, Vasilopoulou CG, Viant M, Winder CL, Wishart D, Zhang L, Zheng J, Moseley MA | Analytical chemistry | 31638379 | Anal Chem | 2019 Nov 19 |
| Sub-nanoliter metabolomics via mass spectrometry to characterize volume-limited samples. | Li Y, Bouza M, Wu C, Guo H, Huang D, Doron G, Temenoff JS, Stecenko AA, Wang ZL, Fernández FM | Nature communications | 33159052 | Nat Commun | 2020 Nov 6 |
| Metabolite Structure Assignment Using In Silico NMR Techniques. | Das S, Edison AS, Merz KM Jr | Analytical chemistry | 32608974 | Anal Chem | 2020 Aug 4 |
| In Silico Collision Cross Section Calculations to Aid Metabolite Annotation. | Das S, Tanemura KA, Dinpazhoh L, Keng M, Schumm C, Leahy L, Asef CK, Rainey M, Edison AS, Fernández FM, Merz KM Jr | Journal of the American Society for Mass Spectrometry | 35378036 | J Am Soc Mass Spectrom | 2022 May 4 |
| GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease. | McIntyre LM, Huertas F, Morse AM, Kaletsky R, Murphy CT, Kalia V, Miller GW, Moskalenko O, Conesa A, Mor DE | Scientific reports | 35228596 | Sci Rep | 2022 Feb 28 |
| The metabolome as a biomarker of aging in Drosophila melanogaster. | Zhao X, Golic FT, Harrison BR, Manoj M, Hoffman EV, Simon N, Johnson R, MacCoss MJ, McIntyre LM, Promislow DEL | Aging cell | 35019203 | Aging Cell | 2022 Feb |
| NMR and Metabolomics-A Roadmap for the Future. | Wishart DS, Cheng LL, Copié V, Edison AS, Eghbalnia HR, Hoch JC, Gouveia GJ, Pathmasiri W, Powers R, Schock TB, Sumner LW, Uchimiya M | Metabolites | 35893244 | Metabolites | 2022 Jul 23 |
| Unknown Metabolite Identification Using Machine Learning Collision Cross-Section Prediction and Tandem Mass Spectrometry. | Asef CK, Rainey MA, Garcia BM, Gouveia GJ, Shaver AO, Leach FE 3rd, Morse AM, Edison AS, McIntyre LM, Fernández FM | Analytical chemistry | 36595469 | Anal Chem | 2023 Jan 17 |
| Crystal-C: A Computational Tool for Refinement of Open Search Results. | Chang HY, Kong AT, da Veiga Leprevost F, Avtonomov DM, Haynes SE, Nesvizhskii AI | Journal of proteome research | 32338005 | J Proteome Res | 2020 Jun 5 |
| Implementing the MSFragger Search Engine as a Node in Proteome Discoverer. | Chang HY, Haynes SE, Yu F, Nesvizhskii AI | Journal of proteome research | 36475762 | J Proteome Res | 2023 Feb 3 |
| Modifying Chromatography Conditions for Improved Unknown Feature Identification in Untargeted Metabolomics. | Anderson BG, Raskind A, Habra H, Kennedy RT, Evans CR | Analytical chemistry | 34794310 | Anal Chem | 2021 Dec 7 |
| The unknown lipids project: harmonized methods improve compound identification and data reproducibility in an inter-laboratory untargeted lipidomics study. | Shen T, Conway C, Rempfert KR, Kyle JE, Colby SM, Gaul DA, Habra H, Kong F, Bloodsworth KJ, Allen D, Evans BS, Du X, Fernandez FM, Metz TO, Fiehn O, Evans CR | bioRxiv : the preprint server for biology | 36778509 | bioRxiv | 2023 Feb 3 |
| Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurvivors. | Evans CR, Karnovsky A, Puskarich MA, Michailidis G, Jones AE, Stringer KA | Journal of proteome research | 30895797 | J Proteome Res | 2019 May 3 |
| metabCombiner: Paired Untargeted LC-HRMS Metabolomics Feature Matching and Concatenation of Disparately Acquired Data Sets. | Habra H, Kachman M, Bullock K, Clish C, Evans CR, Karnovsky A | Analytical chemistry | 33724799 | Anal Chem | 2021 Mar 30 |
| Compound Identification Strategies in Mass Spectrometry-Based Metabolomics and Pharmacometabolomics. | Hissong R, Evans KR, Evans CR | Handbook of experimental pharmacology | 36409330 | Handb Exp Pharmacol | 2023 |
| In-Depth Chemical Analysis of the Brain Extracellular Space Using In Vivo Microdialysis with Liquid Chromatography-Tandem Mass Spectrometry. | Anderson BG, Popov P, Cicali AR, Nwamba A, Evans CR, Kennedy RT | Analytical chemistry | 39360623 | Anal Chem | 2024 Oct 15 |
| Metabolome-wide association study of flavorant vanillin exposure in bronchial epithelial cells reveals disease-related perturbations in metabolism. | Smith MR, Jarrell ZR, Orr M, Liu KH, Go YM, Jones DP | Environment international | 33360165 | Environ Int | 2021 Feb |
| Metformin rescues Parkinson's disease phenotypes caused by hyperactive mitochondria. | Mor DE, Sohrabi S, Kaletsky R, Keyes W, Tartici A, Kalia V, Miller GW, Murphy CT | Proceedings of the National Academy of Sciences of the United States of America | 33024014 | Proc Natl Acad Sci U S A | 2020 Oct 20 |
| Environmental chemicals and metabolic disruption in primary and secondary human parathyroid tumors. | Hu X, Saunders N, Safley S, Smith MR, Liang Y, Tran V, Sharma J, Jones DP, Weber CJ | Surgery | 32771296 | Surgery | 2021 Jan |
| Associations of Benzo(ghi)perylene and Heptachlorodibenzo-p-dioxin in Serum of Service Personnel Deployed to Balad, Iraq, and Bagram, Afghanistan Correlates With Perturbed Amino Acid Metabolism in Human Lung Fibroblasts. | Smith MR, Woeller CF, Uppal K, Thatcher TH, Walker DI, Hopke PK, Rohrbeck P, Mallon TM, Krahl PL, Utell MJ, Go YM, Jones DP | Journal of occupational and environmental medicine | 31800449 | J Occup Environ Med | 2019 Dec |
| The Essential Toolbox of Data Science: Python, R, Git, and Docker. | Pittard WS, Li S | Methods in molecular biology (Clifton, N.J.) | 31953823 | Methods Mol Biol | 2020 |
| Metabolomic Profiling After a Meal Shows Greater Changes and Lower Metabolic Flexibility in Cardiometabolic Diseases. | Yu EA, Yu T, Jones DP, Ramirez-Zea M, Stein AD | Journal of the Endocrine Society | 33134764 | J Endocr Soc | 2020 Nov 1 |
| A scalable workflow to characterize the human exposome. | Hu X, Walker DI, Liang Y, Smith MR, Orr ML, Juran BD, Ma C, Uppal K, Koval M, Martin GS, Neujahr DC, Marsit CJ, Go YM, Pennell KD, Miller GW, Lazaridis KN, Jones DP | Nature communications | 34552080 | Nat Commun | 2021 Sep 22 |
| The metabolome: A key measure for exposome research in epidemiology. | Walker DI, Valvi D, Rothman N, Lan Q, Miller GW, Jones DP | Current epidemiology reports | 31828002 | Curr Epidemiol Rep | 2019 |
| Metabolome Wide Association Study of serum DDT and DDE in Pregnancy and Early Postpartum. | Hu X, Li S, Cirillo P, Krigbaum N, Tran V, Ishikawa T, La Merrill MA, Jones DP, Cohn B | Reproductive toxicology (Elmsford, N.Y.) | 31102720 | Reprod Toxicol | 2020 Mar |
| Cruciferous vegetables (Brassica oleracea) confer cytoprotective effects in Drosophila intestines. | Lyles JT, Luo L, Liu K, Jones DP, Jones RM, Quave CL | Gut microbes | 33966605 | Gut Microbes | 2021 Jan-Dec |
| Utilizing a Biology-Driven Approach to Map the Exposome in Health and Disease: An Essential Investment to Drive the Next Generation of Environmental Discovery. | Chung MK, Rappaport SM, Wheelock CE, Nguyen VK, van der Meer TP, Miller GW, Vermeulen R, Patel CJ | Environmental health perspectives | 34435882 | Environ Health Perspect | 2021 Aug |
| The exposome and liver disease - how environmental factors affect liver health. | Barouki R, Samson M, Blanc EB, Colombo M, Zucman-Rossi J, Lazaridis KN, Miller GW, Coumoul X | Journal of hepatology | 36889360 | J Hepatol | 2023 Aug |
| High-Throughput Production of Diverse Xenobiotic Metabolites with Cytochrome P450-Transduced Huh7 Hepatoma Cell Lines. | Lee CM, Liu KH, Singer G, Miller GW, Li S, Jones DP, Morgan ET | Drug metabolism and disposition: the biological fate of chemicals | 35752443 | Drug Metab Dispos | 2022 Sep |
| Metabolic Signatures of Youth Exposure to Mixtures of Per- and Polyfluoroalkyl Substances: A Multi-Cohort Study. | Goodrich JA, Walker DI, He J, Lin X, Baumert BO, Hu X, Alderete TL, Chen Z, Valvi D, Fuentes ZC, Rock S, Wang H, Berhane K, Gilliland FD, Goran MI, Jones DP, Conti DV, Chatzi L | Environmental health perspectives | 36821578 | Environ Health Perspect | 2023 Feb |
| Integrating the exposome into a multi-omic research framework. | Miller GW | Exposome | 37538530 | Exposome | 2021 |
| Effect of altered production and storage of dopamine on development and behavior in C. elegans. | Lee I, Knickerbocker AC, Depew CR, Martin E, Dicent J, Miller GW, Bucher ML | bioRxiv : the preprint server for biology | 37873331 | bioRxiv | 2023 Oct 10 |
| Exposure to perfluoroalkyl substances and longitudinal changes in bone mineral density in adolescents and young adults: A multi-cohort study. | Beglarian E, Costello E, Walker DI, Wang H, Alderete TL, Chen Z, Valvi D, Baumert BO, Rock S, Rubbo B, Aung MT, Gilliland FD, Goran MI, Jones DP, McConnell R, Eckel SP, Conti DV, Goodrich JA, Chatzi L | Environmental research | 38061983 | Environ Res | 2024 Mar 1 |
| Understanding mixed environmental exposures using metabolomics via a hierarchical community network model in a cohort of California women in 1960's. | Li S, Cirillo P, Hu X, Tran V, Krigbaum N, Yu S, Jones DP, Cohn B | Reproductive toxicology (Elmsford, N.Y.) | 31299210 | Reprod Toxicol | 2020 Mar |
| Omics Integration for Mitochondria Systems Biology. | Hu X, Go YM, Jones DP | Antioxidants & redox signaling | 31891667 | Antioxid Redox Signal | 2020 Apr 20 |
| Plasma concentrations of lipophilic persistent organic pollutants and glucose homeostasis in youth populations. | Baumert BO, Goodrich JA, Hu X, Walker DI, Alderete TL, Chen Z, Valvi D, Rock S, Berhane K, Gilliland FD, Goran MI, Jones DP, Conti DV, Chatzi L | Environmental research | 35447156 | Environ Res | 2022 Sep |
| A vision for exposome epidemiology: The pregnancy exposome in relation to breast cancer in the Child Health and Development Studies. | Jones DP, Cohn BA | Reproductive toxicology (Elmsford, N.Y.) | 32197999 | Reprod Toxicol | 2020 Mar |
| Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology. | Sies H, Belousov VV, Chandel NS, Davies MJ, Jones DP, Mann GE, Murphy MP, Yamamoto M, Winterbourn C | Nature reviews. Molecular cell biology | 35190722 | Nat Rev Mol Cell Biol | 2022 Jul |
| Differences in plasma metabolites related to Alzheimer's disease, APOE ε4 status, and ethnicity. | Vardarajan B, Kalia V, Manly J, Brickman A, Reyes-Dumeyer D, Lantigua R, Ionita-Laza I, Jones DP, Miller GW, Mayeux R | Alzheimer's & dementia (New York, N. Y.) | 32377558 | Alzheimers Dement (N Y) | 2020 |
| Macronutrient, Energy, and Bile Acid Metabolism Pathways Altered Following a Physiological Meal Challenge, Relative to Fasting, among Guatemalan Adults. | Yu EA, Yu T, Jones DP, Martorell R, Ramirez-Zea M, Stein AD | The Journal of nutrition | 32597983 | J Nutr | 2020 Aug 1 |
| Distribution of phytochelatins, metal-binding compounds, in plant foods: A survey of commonly consumed fruits, vegetables, grains and legumes. | Dennis KK, Liu KH, Uppal K, Go YM, Jones DP | Food chemistry | 32950899 | Food Chem | 2021 Mar 1 |
| Air pollution and decreased bone mineral density among Women's Health Initiative participants. | Prada D, Crandall CJ, Kupsco A, Kioumourtzoglou MA, Stewart JD, Liao D, Yanosky JD, Ramirez A, Wactawski-Wende J, Shen Y, Miller G, Ionita-Laza I, Whitsel EA, Baccarelli AA | EClinicalMedicine | 36820096 | EClinicalMedicine | 2023 Mar |
| High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. | Lai Y, Koelmel JP, Walker DI, Price EJ, Papazian S, Manz KE, Castilla-Fernández D, Bowden JA, Nikiforov V, David A, Bessonneau V, Amer B, Seethapathy S, Hu X, Lin EZ, Jbebli A, McNeil BR, Barupal D, Cerasa M, Xie H, Kalia V, Nandakumar R, Singh R, Tian Z, Gao P, Zhao Y, Froment J, Rostkowski P, Dubey S, Coufalíková K, Seličová H, Hecht H, Liu S, Udhani HH, Restituito S, Tchou-Wong KM, Lu K, Martin JW, Warth B, Godri Pollitt KJ, Klánová J, Fiehn O, Metz TO, Pennell KD, Jones DP, Miller GW | Environmental science & technology | 38984754 | Environ Sci Technol | 2024 Jul 23 |
| Exposome: a new field, a new journal. | Miller GW | Exposome | 37538531 | Exposome | 2021 |
| Postprandial Metabolite Profiles and Risk of Prediabetes in Young People: A Longitudinal Multicohort Study. | Goodrich JA, Wang H, Walker DI, Lin X, Hu X, Alderete TL, Chen Z, Valvi D, Baumert BO, Rock S, Berhane K, Gilliland FD, Goran MI, Jones DP, Conti DV, Chatzi L | Diabetes care | 37971952 | Diabetes Care | 2024 Jan 1 |
| Effect of altered production and storage of dopamine on development and behavior in C. elegans. | Lee I, Knickerbocker AC, Depew CR, Martin EL, Dicent J, Miller GW, Bucher ML | Frontiers in toxicology | 39219718 | Front Toxicol | 2024 |
| Mammalian hydroxylation of microbiome-derived obesogen, delta-valerobetaine, to homocarnitine, a 5-carbon carnitine analog. | Weinberg J, Liu KH, Lee CM, Crandall WJ, Cuevas AR, Druzak SA, Morgan ET, Jarrell ZR, Ortlund EA, Martin GS, Singer G, Strobel FH, Go YM, Jones DP | The Journal of biological chemistry | 39675709 | J Biol Chem | 2025 Jan |
| The Exposome and Toxicology: A Win-Win Collaboration. | Barouki R, Audouze K, Becker C, Blaha L, Coumoul X, Karakitsios S, Klanova J, Miller GW, Price EJ, Sarigiannis D | Toxicological sciences : an official journal of the Society of Toxicology | 34878125 | Toxicol Sci | 2022 Feb 28 |
| Large scale enzyme based xenobiotic identification for exposomics. | Liu KH, Lee CM, Singer G, Bais P, Castellanos F, Woodworth MH, Ziegler TR, Kraft CS, Miller GW, Li S, Go YM, Morgan ET, Jones DP | Nature communications | 34521839 | Nat Commun | 2021 Sep 14 |
| Metabolomics as a Truly Translational Tool for Precision Medicine. | Schmidt JC, Dougherty BV, Beger RD, Jones DP, Schmidt MA, Mattes WB | International journal of toxicology | 34514887 | Int J Toxicol | 2021 Oct |
| Phytochelatin database: a resource for phytochelatin complexes of nutritional and environmental metals. | Dennis KK, Uppal K, Liu KH, Ma C, Liang B, Go YM, Jones DP | Database : the journal of biological databases and curation | 31267134 | Database (Oxford) | 2019 Jan 1 |
| Arginine and Carnitine Metabolites Are Altered in Diabetic Retinopathy. | Sumarriva K, Uppal K, Ma C, Herren DJ, Wang Y, Chocron IM, Warden C, Mitchell SL, Burgess LG, Goodale MP, Osborn MP, Ferreira AJ, Law JC, Cherney EF, Jones DP, Brantley MA Jr | Investigative ophthalmology & visual science | 31323682 | Invest Ophthalmol Vis Sci | 2019 Jul 1 |
| A Bioinformatics Primer to Data Science, with Examples for Metabolomics. | Pittard WS, Villaveces CK, Li S | Methods in molecular biology (Clifton, N.J.) | 31953822 | Methods Mol Biol | 2020 |
| Network-Based Approaches for Multi-omics Integration. | Zhou G, Li S, Xia J | Methods in molecular biology (Clifton, N.J.) | 31953831 | Methods Mol Biol | 2020 |
| The exposome and health: Where chemistry meets biology. | Vermeulen R, Schymanski EL, Barabási AL, Miller GW | Science (New York, N.Y.) | 31974245 | Science | 2020 Jan 24 |
| Seminar: Functional Exposomics and Mechanisms of Toxicity-Insights from Model Systems and NAMs. | Lai Y, Ay M, Hospital CD, Miller GW, Sarkar S | Environmental health perspectives | 39230330 | Environ Health Perspect | 2024 Sep |
| Environmental chemical burden in metabolic tissues and systemic biological pathways in adolescent bariatric surgery patients: A pilot untargeted metabolomic approach. | Valvi D, Walker DI, Inge T, Bartell SM, Jenkins T, Helmrath M, Ziegler TR, La Merrill MA, Eckel SP, Conti D, Liang Y, Jones DP, McConnell R, Chatzi L | Environment international | 32683211 | Environ Int | 2020 Oct |
| Metabolome Wide Association Study of Serum Poly and Perfluoroalkyl Substances (PFASs) in Pregnancy and Early Postpartum. | Hu X, Li S, Cirillo PM, Krigbaum NY, Tran V, Jones DP, Cohn BA | Reproductive toxicology (Elmsford, N.Y.) | 31121237 | Reprod Toxicol | 2019 Aug |
| Reference Standardization for Quantification and Harmonization of Large-Scale Metabolomics. | Liu KH, Nellis M, Uppal K, Ma C, Tran V, Liang Y, Walker DI, Jones DP | Analytical chemistry | 32490663 | Anal Chem | 2020 Jul 7 |
| Microbial metabolite delta-valerobetaine is a diet-dependent obesogen. | Liu KH, Owens JA, Saeedi B, Cohen CE, Bellissimo MP, Naudin C, Darby T, Druzak S, Maner-Smith K, Orr M, Hu X, Fernandes J, Camacho MC, Hunter-Chang S, VanInsberghe D, Ma C, Ganesh T, Yeligar SM, Uppal K, Go YM, Alvarez JA, Vos MB, Ziegler TR, Woodworth MH, Kraft CS, Jones RM, Ortlund E, Neish AS, Jones DP | Nature metabolism | 34931082 | Nat Metab | 2021 Dec |
| Associations of dietary intake and longitudinal measures of per- and polyfluoroalkyl substances (PFAS) in predominantly Hispanic young Adults: A multicohort study. | Hampson HE, Costello E, Walker DI, Wang H, Baumert BO, Valvi D, Rock S, Jones DP, Goran MI, Gilliland FD, Conti DV, Alderete TL, Chen Z, Chatzi L, Goodrich JA | Environment international | 38316574 | Environ Int | 2024 Mar |
| 17-α estradiol ameliorates age-associated sarcopenia and improves late-life physical function in male mice but not in females or castrated males. | Garratt M, Leander D, Pifer K, Bower B, Herrera JJ, Day SM, Fiehn O, Brooks SV, Miller RA | Aging cell | 30740872 | Aging Cell | 2019 Apr |
| Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and Antiviral Responses in Aedes albopictus. | Onyango MG, Attardo GM, Kelly ET, Bialosuknia SM, Stout J, Banker E, Kuo L, Ciota AT, Kramer LD | Frontiers in microbiology | 33133033 | Front Microbiol | 2020 |
| The Emerging and Diverse Roles of Bis(monoacylglycero) Phosphate Lipids in Cellular Physiology and Disease. | Showalter MR, Berg AL, Nagourney A, Heil H, Carraway KL 3rd, Fiehn O | International journal of molecular sciences | 33137979 | Int J Mol Sci | 2020 Oct 29 |
| JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding. | DiTacchio KA, Kalinowska D, Saran AR, Byrne A, Vollmers C, DiTacchio L | Cell reports | 32460011 | Cell Rep | 2020 May 26 |
| Leucoselect Phytosome Modulates Serum Eicosapentaenoic Acid, Docosahexaenoic Acid, and Prostaglandin E3 in a Phase I Lung Cancer Chemoprevention Study. | Mao JT, Xue B, Fan S, Neis P, Qualls C, Massie L, Fiehn O | Cancer prevention research (Philadelphia, Pa.) | 33707173 | Cancer Prev Res (Phila) | 2021 Jun |
| Glutathione deficiency decreases lipid droplet stores and increases reactive oxygen species in mouse oocytes†. | Malott KF, Reshel S, Ortiz L, Luderer U | Biology of reproduction | 35238901 | Biol Reprod | 2022 Jun 13 |
| Predicting in silico electron ionization mass spectra using quantum chemistry. | Wang S, Kind T, Tantillo DJ, Fiehn O | Journal of cheminformatics | 33372633 | J Cheminform | 2020 Oct 20 |
| Application of Machine Learning to Metabolomic Profile Characterization in Glioblastoma Patients Undergoing Concurrent Chemoradiation. | Aboud O, Liu YA, Fiehn O, Brydges C, Fragoso R, Lee HS, Riess J, Hodeify R, Bloch O | Metabolites | 36837918 | Metabolites | 2023 Feb 17 |
| LibGen: Generating High Quality Spectral Libraries of Natural Products for EAD-, UVPD-, and HCD-High Resolution Mass Spectrometers. | Kong F, Keshet U, Shen T, Rodriguez E, Fiehn O | Analytical chemistry | 37939222 | Anal Chem | 2023 Nov 21 |
| Denoising Search doubles the number of metabolite and exposome annotations in human plasma using an Orbitrap Astral mass spectrometer. | Kong F, Shen T, Li Y, Bashar A, Bird SS, Fiehn O | Research square | 39108483 | Res Sq | 2024 Jul 25 |
| SS-31 does not prevent or reduce muscle atrophy 7 days after a 65 kdyne contusion spinal cord injury in young male mice. | Graham ZA, DeBerry JJ, Cardozo CP, Bamman MM | Physiological reports | 35611788 | Physiol Rep | 2022 May |
| Boldine Alters Serum Lipidomic Signatures after Acute Spinal Cord Transection in Male Mice. | Graham ZA, Siedlik JA, Toro CA, Harlow L, Cardozo CP | International journal of environmental research and public health | 37623175 | Int J Environ Res Public Health | 2023 Aug 17 |
| Differences in the Stool Metabolome between Vegans and Omnivores: Analyzing the NIST Stool Reference Material. | Cumeras R, Shen T, Valdiviez L, Tippins Z, Haffner BD, Fiehn O | Metabolites | 37623865 | Metabolites | 2023 Aug 7 |
| SMetaS: A Sample Metadata Standardizer for Metabolomics. | Bremer PL, Fiehn O | Metabolites | 37623884 | Metabolites | 2023 Aug 12 |
| Automatic Assignment of Molecular Ion Species to Elemental Formulas in Gas Chromatography/Methane Chemical Ionization Accurate Mass Spectrometry. | Wang S, Valdiviez L, Ye H, Fiehn O | Metabolites | 37623905 | Metabolites | 2023 Aug 19 |
| A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium. | Barupal DK, Zhang Y, Shen T, Fan S, Roberts BS, Fitzgerald P, Wancewicz B, Valdiviez L, Wohlgemuth G, Byram G, Choy YY, Haffner B, Showalter MR, Vaniya A, Bloszies CS, Folz JS, Kind T, Flenniken AM, McKerlie C, Nutter LMJ, Lloyd KC, Fiehn O | Metabolites | 31121816 | Metabolites | 2019 May 22 |
| Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids. | DeFelice BC, Fiehn O | Talanta | 30683386 | Talanta | 2019 May 1 |
| Structure Annotation of All Mass Spectra in Untargeted Metabolomics. | Blaženović I, Kind T, Sa MR, Ji J, Vaniya A, Wancewicz B, Roberts BS, Torbašinović H, Lee T, Mehta SS, Showalter MR, Song H, Kwok J, Jahn D, Kim J, Fiehn O | Analytical chemistry | 30608141 | Anal Chem | 2019 Feb 5 |
| Serum and urinary metabolomics and outcomes in cirrhosis. | Bajaj JS, Fan S, Thacker LR, Fagan A, Gavis E, White MB, Heuman DM, Fuchs M, Fiehn O | PloS one | 31560724 | PLoS One | 2019 |
| Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics. | Ismail IT, Showalter MR, Fiehn O | Metabolites | 31640247 | Metabolites | 2019 Oct 21 |
| Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification. | Li Y, Kind T, Folz J, Vaniya A, Mehta SS, Fiehn O | Nature methods | 34857935 | Nat Methods | 2021 Dec |
| Effects of Lean Pork on Microbiota and Microbial-Metabolite Trimethylamine-N-Oxide: A Randomized Controlled Non-Inferiority Feeding Trial Based on the Dietary Guidelines for Americans. | Dhakal S, Moazzami Z, Perry C, Dey M | Molecular nutrition & food research | 35182101 | Mol Nutr Food Res | 2022 May |
| Preclinical translation of exosomes derived from mesenchymal stem/stromal cells. | Elahi FM, Farwell DG, Nolta JA, Anderson JD | Stem cells (Dayton, Ohio) | 31381842 | Stem Cells | 2020 Jan |
| Quantum Chemical Prediction of Electron Ionization Mass Spectra of Trimethylsilylated Metabolites. | Wang S, Kind T, Bremer PL, Tantillo DJ, Fiehn O | Analytical chemistry | 35006668 | Anal Chem | 2022 Jan 25 |
| Comprehensive metabolomic study of the response of HK-2 cells to hyperglycemic hypoxic diabetic-like milieu. | Valdés A, Lucio-Cazaña FJ, Castro-Puyana M, García-Pastor C, Fiehn O, Marina ML | Scientific reports | 33658594 | Sci Rep | 2021 Mar 3 |
| Methods to capture proteomic and metabolomic signatures from cerebrospinal fluid and serum of healthy individuals. | Lilley LM, Sanche S, Moore SC, Salemi MR, Vu D, Iyer S, Hengartner NW, Mukundan H | Scientific reports | 35922450 | Sci Rep | 2022 Aug 3 |
| Lipidomics of cyclophosphamide 4-hydroxylation in patients receiving post-transplant cyclophosphamide. | Navarro SL, Zheng Z, Randolph TW, Nakamura R, Sandmaier BM, Hockenbery D, McCune JS | Clinical and translational science | 36088654 | Clin Transl Sci | 2022 Nov |
| Pharmacometabonomic association of cyclophosphamide 4-hydroxylation in hematopoietic cell transplant recipients. | McCune JS, Nakamura R, O'Meally D, Randolph TW, Sandmaier BM, Karolak A, Hockenbery D, Navarro SL | Clinical and translational science | 35106927 | Clin Transl Sci | 2022 May |
| The BinDiscover database: a biology-focused meta-analysis tool for 156,000 GC-TOF MS metabolome samples. | Bremer PL, Wohlgemuth G, Fiehn O | Journal of cheminformatics | 37475020 | J Cheminform | 2023 Jul 20 |
| Flash entropy search to query all mass spectral libraries in real time. | Li Y, Fiehn O | Nature methods | 37735567 | Nat Methods | 2023 Oct |
| Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment. | Aboud O, Liu Y, Dahabiyeh L, Abuaisheh A, Li F, Aboubechara JP, Riess J, Bloch O, Hodeify R, Tagkopoulos I, Fiehn O | Biomedicines | 37626757 | Biomedicines | 2023 Aug 13 |
| Impact of Protonation Sites on Collision-Induced Dissociation-MS/MS Using CIDMD Quantum Chemistry Modeling. | Lee J, Tantillo DJ, Wang LP, Fiehn O | Journal of chemical information and modeling | 39329341 | J Chem Inf Model | 2024 Oct 14 |
| Allele-specific dysregulation of lipid and energy metabolism in early-stage hypertrophic cardiomyopathy. | Vaniya A, Karlstaedt A, Gulkok D, Thottakara T, Liu Y, Fan S, Eades H, Vakrou S, Fukunaga R, Vernon HJ, Fiehn O, Roselle Abraham M | Journal of molecular and cellular cardiology plus | 39430912 | J Mol Cell Cardiol Plus | 2024 Jun |
| Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats. | Barupal DK, Pinkerton KE, Hood C, Kind T, Fiehn O | Chemical research in toxicology | 27788581 | Chem Res Toxicol | 2016 Nov 21 |
| Evaluating the Accuracy of the QCEIMS Approach for Computational Prediction of Electron Ionization Mass Spectra of Purines and Pyrimidines. | Lee J, Kind T, Tantillo DJ, Wang LP, Fiehn O | Metabolites | 35050190 | Metabolites | 2022 Jan 12 |
| Plasma Metabolite Profiles Following Consumption of Animal Protein and Soybean-Based Diet in Hypercholesterolemic Postmenopausal Women. | Huang NK, Matthan NR, Matuszek G, Lichtenstein AH | Metabolites | 35323651 | Metabolites | 2022 Feb 25 |
| Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion of 9 Cell-Cell Signaling Molecules from Sympathoadrenal Chromaffin Cells in the Presence of Lithium. | Hook V, Kind T, Podvin S, Palazoglu M, Tran C, Toneff T, Samra S, Lietz C, Fiehn O | ACS chemical neuroscience | 30698015 | ACS Chem Neurosci | 2019 Mar 20 |
| Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation. | Showalter MR, Wancewicz B, Fiehn O, Archard JA, Clayton S, Wagner J, Deng P, Halmai J, Fink KD, Bauer G, Fury B, Perotti NH, Apperson M, Butters J, Belafsky P, Farwell G, Kuhn M, Nolta JA, Anderson JD | Biochemical and biophysical research communications | 30926165 | Biochem Biophys Res Commun | 2019 May 14 |
| Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics. | Bonini P, Kind T, Tsugawa H, Barupal DK, Fiehn O | Analytical chemistry | 32390414 | Anal Chem | 2020 Jun 2 |
| Exosomes in disease and regeneration: biological functions, diagnostics, and beneficial effects. | Lin Y, Anderson JD, Rahnama LMA, Gu SV, Knowlton AA | American journal of physiology. Heart and circulatory physiology | 32986962 | Am J Physiol Heart Circ Physiol | 2020 Dec 1 |
| Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Flight, and Quadrupole Mass Spectrometry. | Zhang Y, Gao B, Valdiviez L, Zhu C, Gallagher T, Whiteson K, Fiehn O | Analytical chemistry | 33434014 | Anal Chem | 2021 Feb 2 |
| Plasma lipidomics profile in pregnancy and gestational diabetes risk: a prospective study in a multiracial/ethnic cohort. | Rahman ML, Feng YA, Fiehn O, Albert PS, Tsai MY, Zhu Y, Wang X, Tekola-Ayele F, Liang L, Zhang C | BMJ open diabetes research & care | 33674279 | BMJ Open Diabetes Res Care | 2021 Mar |
| Resistant starch type-4 intake alters circulating bile acids in human subjects. | Dhakal S, Dey M | Frontiers in nutrition | 36337613 | Front Nutr | 2022 |
| Denoising Autoencoder Normalization for Large-Scale Untargeted Metabolomics by Gas Chromatography-Mass Spectrometry. | Zhang Y, Fan S, Wohlgemuth G, Fiehn O | Metabolites | 37623887 | Metabolites | 2023 Aug 13 |
| Sexual Dimorphism of the Mouse Plasma Metabolome Is Associated with Phenotypes of 30 Gene Knockout Lines. | Zhang Y, Barupal DK, Fan S, Gao B, Zhu C, Flenniken AM, McKerlie C, Nutter LMJ, Lloyd KCK, Fiehn O | Metabolites | 37623890 | Metabolites | 2023 Aug 15 |
| How Well Can We Predict Mass Spectra from Structures? Benchmarking Competitive Fragmentation Modeling for Metabolite Identification on Untrained Tandem Mass Spectra. | Bremer PL, Vaniya A, Kind T, Wang S, Fiehn O | Journal of chemical information and modeling | 36043939 | J Chem Inf Model | 2022 Sep 12 |
| Beyond the Ground State: Predicting Electron Ionization Mass Spectra Using Excited-State Molecular Dynamics. | Wang S, Kind T, Bremer PL, Tantillo DJ, Fiehn O | Journal of chemical information and modeling | 36107950 | J Chem Inf Model | 2022 Sep 26 |
| Assessing the impact of boldine on the gastrocnemius using multiomics profiling at 7 and 28 days post-complete spinal cord injury in young male mice. | Potter LA, Toro CA, Harlow L, Lavin KM, Cardozo CP, Wende AR, Graham ZA | Physiological genomics | 37125768 | Physiol Genomics | 2023 Jul 1 |
| Author Correction: Structure of human GABA(B) receptor in an inactive state. | Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR | Nature | 32665714 | Nature | 2020 Jul |
| Metabolomics of Lung Microdissections Reveals Region- and Sex-Specific Metabolic Effects of Acute Naphthalene Exposure in Mice. | Stevens NC, Edwards PC, Tran LM, Ding X, Van Winkle LS, Fiehn O | Toxicological sciences : an official journal of the Society of Toxicology | 34498071 | Toxicol Sci | 2021 Nov 24 |
| Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data. | Fan S, Kind T, Cajka T, Hazen SL, Tang WHW, Kaddurah-Daouk R, Irvin MR, Arnett DK, Barupal DK, Fiehn O | Analytical chemistry | 30758187 | Anal Chem | 2019 Mar 5 |
| In-Silico-Generated Library for Sensitive Detection of 2-Dimethylaminoethylamine Derivatized FAHFA Lipids Using High-Resolution Tandem Mass Spectrometry. | Ding J, Kind T, Zhu QF, Wang Y, Yan JW, Fiehn O, Feng YQ | Analytical chemistry | 32202765 | Anal Chem | 2020 Apr 21 |
| Sugar Alcohols Have a Key Role in Pathogenesis of Chronic Liver Disease and Hepatocellular Carcinoma in Whole Blood and Liver Tissues. | Ismail IT, Fiehn O, Elfert A, Helal M, Salama I, El-Said H | Cancers | 32092943 | Cancers (Basel) | 2020 Feb 19 |
| Remodeling Lipids in the Transition from Chronic Liver Disease to Hepatocellular Carcinoma. | Ismail IT, Elfert A, Helal M, Salama I, El-Said H, Fiehn O | Cancers | 33396945 | Cancers (Basel) | 2020 Dec 30 |
| Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicago spp. Revealed by Metabolomic and Gene Expression Profiles. | Gifford I, Battenberg K, Vaniya A, Wilson A, Tian L, Fiehn O, Berry AM | Frontiers in plant science | 30364174 | Front Plant Sci | 2018 |
| Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed by Neuropeptidomics Mass Spectrometry. | Hook V, Lietz CB, Podvin S, Cajka T, Fiehn O | Journal of the American Society for Mass Spectrometry | 29667161 | J Am Soc Mass Spectrom | 2018 May |
| Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. | Barupal DK, Fan S, Fiehn O | Current opinion in biotechnology | 29413745 | Curr Opin Biotechnol | 2018 Dec |
| Structure of human GABA(B) receptor in an inactive state. | Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR | Nature | 32581365 | Nature | 2020 Aug |
| Utilizing cooled liquid chromatography and chemical derivatization to separate and quantify C3-epimers of 25-hydroxy vitamin D and low abundant 1α,25(OH)(2)D3: Application in a pediatric population. | DeFelice BC, Pedersen TL, Shorrosh H, Johnson RK, Seifert JA, Norris JM, Fiehn O | The Journal of steroid biochemistry and molecular biology | 31715316 | J Steroid Biochem Mol Biol | 2020 Mar |
| Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. | Barupal DK, Fiehn O | Environmental health perspectives | 31557052 | Environ Health Perspect | 2019 Sep |
| Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology. | Barupal DK, Baillie R, Fan S, Saykin AJ, Meikle PJ, Arnold M, Nho K, Fiehn O, Kaddurah-Daouk R, Alzheimer Disease Metabolomics Consortium | Alzheimer's & dementia (Amsterdam, Netherlands) | 31517024 | Alzheimers Dement (Amst) | 2019 Dec |
| Plasma Metabolite Response to Simple, Refined and Unrefined Carbohydrate-Enriched Diets in Older Adults-Randomized Controlled Crossover Trial. | Huang NK, Matthan NR, Matuszek G, Lichtenstein AH | Metabolites | 35736480 | Metabolites | 2022 Jun 15 |
| Mouse models of NADK2 deficiency analyzed for metabolic and gene expression changes to elucidate pathophysiology. | Murray GC, Bais P, Hatton CL, Tadenev ALD, Hoffmann BR, Stodola TJ, Morelli KH, Pratt SL, Schroeder D, Doty R, Fiehn O, John SWM, Bult CJ, Cox GA, Burgess RW | Human molecular genetics | 35796562 | Hum Mol Genet | 2022 Nov 28 |
| Acyl-CoA Identification in Mouse Liver Samples Using the In Silico CoA-Blast Tandem Mass Spectral Library. | Keshet U, Kind T, Lu X, Devi S, Fiehn O | Analytical chemistry | 35119811 | Anal Chem | 2022 Feb 15 |
| A metabolome atlas of the aging mouse brain. | Ding J, Ji J, Rabow Z, Shen T, Folz J, Brydges CR, Fan S, Lu X, Mehta S, Showalter MR, Zhang Y, Araiza R, Bower LR, Lloyd KCK, Fiehn O | Nature communications | 34654818 | Nat Commun | 2021 Oct 15 |
| Cellular transformation promotes the incorporation of docosahexaenoic acid into the endolysosome-specific lipid bis(monoacylglycerol)phosphate in breast cancer. | Berg AL, Showalter MR, Kosaisawe N, Hu M, Stephens NC, Sa M, Heil H, Castro N, Chen JJ, VanderVorst K, Wheeler MR, Rabow Z, Cajka T, Albeck J, Fiehn O, Carraway KL 3rd | Cancer letters | 36773796 | Cancer Lett | 2023 Mar 31 |
| Comparison of Plasma Metabolome Response to Diets Enriched in Soybean and Partially-Hydrogenated Soybean Oil in Moderately Hypercholesterolemic Adults-A Pilot Study. | Huang NK, Lichtenstein AH, Matuszek G, Matthan NR | Metabolites | 37110133 | Metabolites | 2023 Mar 26 |
| Predicting Collision-Induced-Dissociation Tandem Mass Spectra (CID-MS/MS) Using Ab Initio Molecular Dynamics. | Lee J, Tantillo DJ, Wang LP, Fiehn O | Journal of chemical information and modeling | 39329407 | J Chem Inf Model | 2024 Oct 14 |
| Ex Vivo Hepatic Perfusion Through the Portal Vein in Mouse. | Giacalone AG, Merritt ME, Ragavan M | Journal of visualized experiments : JoVE | 35343950 | J Vis Exp | 2022 Mar 9 |
| Measuring NQO1 Bioactivation Using [(2)H(7)]Glucose. | Mahar R, Chang MC, Merritt ME | Cancers | 34439319 | Cancers (Basel) | 2021 Aug 19 |
| Branched chain amino acids and carbohydrate restriction exacerbate ketogenesis and hepatic mitochondrial oxidative dysfunction during NAFLD. | Muyyarikkandy MS, McLeod M, Maguire M, Mahar R, Kattapuram N, Zhang C, Surugihalli C, Muralidaran V, Vavilikolanu K, Mathews CE, Merritt ME, Sunny NE | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 32918763 | FASEB J | 2020 Nov |
| Application of Carbon-13 Isotopomer Analysis to Assess Perinatal Myocardial Glucose Metabolism in Sheep. | Ragavan M, Li M, Giacalone AG, Wood CE, Keller-Wood M, Merritt ME | Metabolites | 33466367 | Metabolites | 2021 Jan 5 |
| Enrichment of hepatic glycogen and plasma glucose from H₂(18) O informs gluconeogenic and indirect pathway fluxes in naturally feeding mice. | Coelho M, Mahar R, Belew GD, Torres A, Barosa C, Cabral F, Viegas I, Gastaldelli A, Mendes VM, Manadas B, Jones JG, Merritt ME | NMR in biomedicine | 36151589 | NMR Biomed | 2023 Feb |
| Lactate-dependent transcriptional regulation controls mammalian eye morphogenesis. | Takata N, Miska JM, Morgan MA, Patel P, Billingham LK, Joshi N, Schipma MJ, Dumar ZJ, Joshi NR, Misharin AV, Embry RB, Fiore L, Gao P, Diebold LP, McElroy GS, Shilatifard A, Chandel NS, Oliver G | Nature communications | 37452018 | Nat Commun | 2023 Jul 14 |
| Fatty acid metabolism promotes TRPV4 activity in lung microvascular endothelial cells in pulmonary arterial hypertension. | Philip N, Yun X, Pi H, Murray S, Hill Z, Fonticella J, Perez P, Zhang C, Pathmasiri W, Sumner S, Servinsky L, Jiang H, Huetsch JC, Oldham WM, Visovatti S, Leary PJ, Gharib SA, Brittain E, Simpson CE, Le A, Shimoda LA, Suresh K | American journal of physiology. Lung cellular and molecular physiology | 38226418 | Am J Physiol Lung Cell Mol Physiol | 2024 Mar 1 |
| Mitochondrial complex I promotes kidney cancer metastasis. | Bezwada D, Perelli L, Lesner NP, Cai L, Brooks B, Wu Z, Vu HS, Sondhi V, Cassidy DL, Kasitinon S, Kelekar S, Cai F, Aurora AB, Patrick M, Leach A, Ghandour R, Zhang Y, Do D, McDaniel P, Sudderth J, Dumesnil D, House S, Rosales T, Poole AM, Lotan Y, Woldu S, Bagrodia A, Meng X, Cadeddu JA, Mishra P, Garcia-Bermudez J, Pedrosa I, Kapur P, Courtney KD, Malloy CR, Genovese G, Margulis V, DeBerardinis RJ | Nature | 39143213 | Nature | 2024 Sep |
| Editorial for "Whole-Abdomen Metabolic Imaging of Healthy Volunteers Using Hyperpolarized [1-(13) C]pyruvate MRI". | Merritt ME | Journal of magnetic resonance imaging : JMRI | 35416358 | J Magn Reson Imaging | 2022 Dec |
| Hyperpolarized Dihydroxyacetone Is a Sensitive Probe of Hepatic Gluconeogenic State. | Ragavan M, McLeod MA, Giacalone AG, Merritt ME | Metabolites | 34357335 | Metabolites | 2021 Jul 5 |
| Metabolic reprogramming by histone deacetylase inhibition preferentially targets NRF2-activated tumors. | Karagiannis D, Wu W, Li A, Hayashi M, Chen X, Yip M, Mangipudy V, Xu X, Sánchez-Rivera FJ, Soto-Feliciano YM, Ye J, Papagiannakopoulos T, Lu C | Cell reports | 38165806 | Cell Rep | 2024 Jan 23 |
| Matrix Linear Models for connecting metabolite composition to individual characteristics. | Farage G, Zhao C, Choi HY, Garrett TJ, Kechris K, Elam MB, Sen Ś | bioRxiv : the preprint server for biology | 38187579 | bioRxiv | 2023 Dec 20 |
| Lipidomic Analysis Reveals Differences in the Extent of Remyelination in the Brain and Spinal Cord. | De Silva Mohotti N, Kobayashi H, Williams JM, Binjawadagi R, Evertsen MP, Christ EG, Hartley MD | Journal of proteome research | 38018851 | J Proteome Res | 2024 Aug 2 |
| Targeted Bmal1 restoration in muscle prolongs lifespan with systemic health effects in aging model. | Gutierrez-Monreal MA, Wolff CA, Rijos EE, Viggars MR, Douglas CM, Pagala V, Peng J, Hunt LC, Ding H, Huo Z, Demontis F, Esser KA | JCI insight | 39352748 | JCI Insight | 2024 Oct 1 |
| Detecting de novo Hepatic Ketogenesis Using Hyperpolarized [2-(13)C] Pyruvate. | Ragavan M, McLeod MA, Rushin A, Merritt ME | Frontiers in physiology | 35197867 | Front Physiol | 2022 |
| Lipogenesis mediated by OGR1 regulates metabolic adaptation to acid stress in cancer cells via autophagy. | Pillai S, Mahmud I, Mahar R, Griffith C, Langsen M, Nguyen J, Wojtkowiak JW, Swietach P, Gatenby RA, Bui MM, Merritt ME, McDonald P, Garrett TJ, Gillies RJ | Cell reports | 35545051 | Cell Rep | 2022 May 10 |
| Murine Norovirus Interaction with Enterobacter cloacae Leads to Changes in Membrane Stability and Packaging of Lipid and Metabolite Vesicle Content. | Mosby CA, Edelmann MJ, Jones MK | Microbiology spectrum | 36943087 | Microbiol Spectr | 2023 Mar 21 |
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| Relationship of muscle sympathetic nerve activity to insulin sensitivity. | Curry TB, Hines CN, Barnes JN, Somaraju M, Basu R, Miles JM, Joyner MJ, Charkoudian N | Clinical autonomic research : official journal of the Clinical Autonomic Research Society | 24577625 | Clin Auton Res | 2014 Apr |
| Circulating extracellular vesicles are a biomarker for NAFLD resolution and response to weight loss surgery. | Nakao Y, Amrollahi P, Parthasarathy G, Mauer AS, Sehrawat TS, Vanderboom P, Nair KS, Nakao K, Allen AM, Hu TY, Malhi H | Nanomedicine : nanotechnology, biology, and medicine | 34174416 | Nanomedicine | 2021 Aug |
| Randomized Controlled Trial of a MUFA or Fiber-Rich Diet on Hepatic Fat in Prediabetes. | Errazuriz I, Dube S, Slama M, Visentin R, Nayar S, O'Connor H, Cobelli C, Das SK, Basu A, Kremers WK, Port J, Basu R | The Journal of clinical endocrinology and metabolism | 28323952 | J Clin Endocrinol Metab | 2017 May 1 |
| Dose-Dependent Response of Personal Glucose Meters to Nicotinamide Coenzymes: Applications to Point-of-Care Diagnostics of Many Non-Glucose Targets in a Single Step. | Zhang J, Xiang Y, Wang M, Basu A, Lu Y | Angewandte Chemie (International ed. in English) | 26593219 | Angew Chem Int Ed Engl | 2016 Jan 11 |
| Circulating Extracellular Vesicles Carrying Sphingolipid Cargo for the Diagnosis and Dynamic Risk Profiling of Alcoholic Hepatitis. | Sehrawat TS, Arab JP, Liu M, Amrollahi P, Wan M, Fan J, Nakao Y, Pose E, Navarro-Corcuera A, Dasgupta D, Liao CY, He L, Mauer AS, Avitabile E, Ventura-Cots M, Bataller RA, Sanyal AJ, Chalasani NP, Heimbach JK, Watt KD, Gores GJ, Gines P, Kamath PS, Simonetto DA, Hu TY, Shah VH, Malhi H | Hepatology (Baltimore, Md.) | 32246544 | Hepatology | 2021 Feb |
| Plasma sphingolipid changes with autopsy-confirmed Lewy Body or Alzheimer's pathology. | Savica R, Murray ME, Persson XM, Kantarci K, Parisi JE, Dickson DW, Petersen RC, Ferman TJ, Boeve BF, Mielke MM | Alzheimer's & dementia (Amsterdam, Netherlands) | 27152320 | Alzheimers Dement (Amst) | 2016 |
| White Matter Lipids as a Ketogenic Fuel Supply in Aging Female Brain: Implications for Alzheimer's Disease. | Klosinski LP, Yao J, Yin F, Fonteh AN, Harrington MG, Christensen TA, Trushina E, Brinton RD | EBioMedicine | 26844268 | EBioMedicine | 2015 Dec |
| Oxygen concentration controls epigenetic effects in models of familial paraganglioma. | Her YF, Nelson-Holte M, Maher LJ 3rd | PloS one | 25985299 | PLoS One | 2015 |
| Porphyromonas somerae Invasion of Endometrial Cancer Cells. | Crooks TA, Madison JD, Walsh DM, Herbert WG, Jeraldo PR, Chia N, Cliby WA, Kaufmann SH, Walther-Antonio MRS | Frontiers in microbiology | 34367083 | Front Microbiol | 2021 |
| Hepatic insulin sensitivity in healthy and prediabetic subjects: from a dual- to a single-tracer oral minimal model. | Visentin R, Dalla Man C, Basu R, Basu A, Rizza RA, Cobelli C | American journal of physiology. Endocrinology and metabolism | 25991649 | Am J Physiol Endocrinol Metab | 2015 Jul 15 |
| Epidermal Fatty Acid binding protein promotes skin inflammation induced by high-fat diet. | Zhang Y, Li Q, Rao E, Sun Y, Grossmann ME, Morris RJ, Cleary MP, Li B | Immunity | 25992864 | Immunity | 2015 May 19 |
| Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma. | Smestad J, Hamidi O, Wang L, Holte MN, Khazal FA, Erber L, Chen Y, Maher LJ 3rd | Oncotarget | 29464059 | Oncotarget | 2018 Jan 19 |
| Distinct Influence of Omega-3 Fatty Acids on the Plasma Metabolome of Healthy Older Adults. | Xyda SE, Vuckovic I, Petterson XM, Dasari S, Lalia AZ, Parvizi M, Macura SI, Lanza IR | The journals of gerontology. Series A, Biological sciences and medical sciences | 31168623 | J Gerontol A Biol Sci Med Sci | 2020 Apr 17 |
| Type 1 equilibrative nucleoside transporter (ENT1) regulates sex-specific ethanol drinking during disruption of circadian rhythms. | Jia YF, Vadnie CA, Ho AM, Peyton L, Veldic M, Wininger K, Matveyenko A, Choi DS | Addiction biology | 31267611 | Addict Biol | 2020 Sep |
| Insulin deficiency and intranasal insulin alter brain mitochondrial function: a potential factor for dementia in diabetes. | Ruegsegger GN, Manjunatha S, Summer P, Gopala S, Zabeilski P, Dasari S, Vanderboom PM, Lanza IR, Klaus KA, Nair KS | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 30676773 | FASEB J | 2019 Mar |
| In vivo assessment of glutamine anaplerosis into the TCA cycle in human pre-malignant and malignant clonal plasma cells. | Gonsalves WI, Jang JS, Jessen E, Hitosugi T, Evans LA, Jevremovic D, Pettersson XM, Bush AG, Gransee J, Anderson EI, Kumar SK, Nair KS | Cancer & metabolism | 33308307 | Cancer Metab | 2020 Dec 11 |
| Increased Brain Glucose Uptake After 12 Weeks of Aerobic High-Intensity Interval Training in Young and Older Adults. | Robinson MM, Lowe VJ, Nair KS | The Journal of clinical endocrinology and metabolism | 29077855 | J Clin Endocrinol Metab | 2018 Jan 1 |
| Altered tricarboxylic acid cycle flux in primary myotubes from severely obese humans. | Zou K, Hinkley JM, Park S, Zheng D, Jones TE, Pories WJ, Hornby PJ, Lenhard J, Dohm GL, Houmard JA | International journal of obesity (2005) | 29892037 | Int J Obes (Lond) | 2019 Apr |
| Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer. | Hale VL, Jeraldo P, Mundy M, Yao J, Keeney G, Scott N, Cheek EH, Davidson J, Greene M, Martinez C, Lehman J, Pettry C, Reed E, Lyke K, White BA, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Boardman L, Larson D, Nelson H, Chia N | Methods (San Diego, Calif.) | 29704665 | Methods | 2018 Oct 1 |
| A novel triple-tracer approach to assess postprandial protein turnover. | Moran A, Toffolo G, Schiavon M, Vella A, Klaus K, Cobelli C, Nair KS | American journal of physiology. Endocrinology and metabolism | 29870679 | Am J Physiol Endocrinol Metab | 2018 Oct 1 |
| First and second trimester urinary metabolic profiles and fetal growth restriction: an exploratory nested case-control study within the infant development and environment study. | Luthra G, Vuckovic I, Bangdiwala A, Gray H, Redmon JB, Barrett ES, Sathyanarayana S, Nguyen RHN, Swan SH, Zhang S, Dzeja P, Macura SI, Nair KS | BMC pregnancy and childbirth | 29422013 | BMC Pregnancy Childbirth | 2018 Feb 8 |
| Glutamine-derived 2-hydroxyglutarate is associated with disease progression in plasma cell malignancies. | Gonsalves WI, Ramakrishnan V, Hitosugi T, Ghosh T, Jevremovic D, Dutta T, Sakrikar D, Petterson XM, Wellik L, Kumar SK, Nair KS | JCI insight | 29321378 | JCI Insight | 2018 Jan 11 |
| Lower plasma choline levels are associated with sleepiness symptoms. | Pak VM, Dai F, Keenan BT, Gooneratne NS, Pack AI | Sleep medicine | 29530375 | Sleep Med | 2018 Apr |
| Interferon Gamma Induces Reversible Metabolic Reprogramming of M1 Macrophages to Sustain Cell Viability and Pro-Inflammatory Activity. | Wang F, Zhang S, Jeon R, Vuckovic I, Jiang X, Lerman A, Folmes CD, Dzeja PD, Herrmann J | EBioMedicine | 29463472 | EBioMedicine | 2018 Apr |
| Genetic Depletion of Adipocyte Creatine Metabolism Inhibits Diet-Induced Thermogenesis and Drives Obesity. | Kazak L, Chouchani ET, Lu GZ, Jedrychowski MP, Bare CJ, Mina AI, Kumari M, Zhang S, Vuckovic I, Laznik-Bogoslavski D, Dzeja P, Banks AS, Rosen ED, Spiegelman BM | Cell metabolism | 28844881 | Cell Metab | 2017 Oct 3 |
| Hyperglucagonemia Mitigates the Effect of Metformin on Glucose Production in Prediabetes. | Konopka AR, Esponda RR, Robinson MM, Johnson ML, Carter RE, Schiavon M, Cobelli C, Wondisford FE, Lanza IR, Nair KS | Cell reports | 27160898 | Cell Rep | 2016 May 17 |
| LIM and cysteine-rich domains 1 (LMCD1) regulates skeletal muscle hypertrophy, calcium handling, and force. | Ferreira DMS, Cheng AJ, Agudelo LZ, Cervenka I, Chaillou T, Correia JC, Porsmyr-Palmertz M, Izadi M, Hansson A, Martínez-Redondo V, Valente-Silva P, Pettersson-Klein AT, Estall JL, Robinson MM, Nair KS, Lanner JT, Ruas JL | Skeletal muscle | 31666122 | Skelet Muscle | 2019 Oct 31 |
| Circadian variability of insulin sensitivity: physiological input for in silico artificial pancreas. | Visentin R, Dalla Man C, Kudva YC, Basu A, Cobelli C | Diabetes technology & therapeutics | 25531427 | Diabetes Technol Ther | 2015 Jan |
| Leucine modulates dynamic phosphorylation events in insulin signaling pathway and enhances insulin-dependent glycogen synthesis in human skeletal muscle cells. | Di Camillo B, Eduati F, Nair SK, Avogaro A, Toffolo GM | BMC cell biology | 24646332 | BMC Cell Biol | 2014 Mar 20 |
| Time lag of glucose from intravascular to interstitial compartment in type 1 diabetes. | Basu A, Dube S, Veettil S, Slama M, Kudva YC, Peyser T, Carter RE, Cobelli C, Basu R | Journal of diabetes science and technology | 25305282 | J Diabetes Sci Technol | 2015 Jan |
| Decline of Phosphotransfer and Substrate Supply Metabolic Circuits Hinders ATP Cycling in Aging Myocardium. | Nemutlu E, Gupta A, Zhang S, Viqar M, Holmuhamedov E, Terzic A, Jahangir A, Dzeja P | PloS one | 26378442 | PLoS One | 2015 |
| Modulation of mitochondrial complex I activity averts cognitive decline in multiple animal models of familial Alzheimer's Disease. | Zhang L, Zhang S, Maezawa I, Trushin S, Minhas P, Pinto M, Jin LW, Prasain K, Nguyen TD, Yamazaki Y, Kanekiyo T, Bu G, Gateno B, Chang KO, Nath KA, Nemutlu E, Dzeja P, Pang YP, Hua DH, Trushina E | EBioMedicine | 26086035 | EBioMedicine | 2015 Apr 1 |
| Adjustment of Open-Loop Settings to Improve Closed-Loop Results in Type 1 Diabetes: A Multicenter Randomized Trial. | Dassau E, Brown SA, Basu A, Pinsker JE, Kudva YC, Gondhalekar R, Patek S, Lv D, Schiavon M, Lee JB, Dalla Man C, Hinshaw L, Castorino K, Mallad A, Dadlani V, McCrady-Spitzer SK, McElwee-Malloy M, Wakeman CA, Bevier WC, Bradley PK, Kovatchev B, Cobelli C, Zisser HC, Doyle FJ 3rd | The Journal of clinical endocrinology and metabolism | 26204135 | J Clin Endocrinol Metab | 2015 Oct |
| Glucocorticoid Excess Increases Hepatic 11β-HSD-1 Activity in Humans: Implications in Steroid-Induced Diabetes. | Dube S, Slama MQ, Basu A, Rizza RA, Basu R | The Journal of clinical endocrinology and metabolism | 26308294 | J Clin Endocrinol Metab | 2015 Nov |
| Elevated baseline serum glutamate as a pharmacometabolomic biomarker for acamprosate treatment outcome in alcohol-dependent subjects. | Nam HW, Karpyak VM, Hinton DJ, Geske JR, Ho AM, Prieto ML, Biernacka JM, Frye MA, Weinshilboum RM, Choi DS | Translational psychiatry | 26285131 | Transl Psychiatry | 2015 Aug 18 |
| Predictors of Whole-Body Insulin Sensitivity Across Ages and Adiposity in Adult Humans. | Lalia AZ, Dasari S, Johnson ML, Robinson MM, Konopka AR, Distelmaier K, Port JD, Glavin MT, Esponda RR, Nair KS, Lanza IR | The Journal of clinical endocrinology and metabolism | 26709968 | J Clin Endocrinol Metab | 2016 Feb |
| Direct Evidence of Acetaminophen Interference with Subcutaneous Glucose Sensing in Humans: A Pilot Study. | Basu A, Veettil S, Dyer R, Peyser T, Basu R | Diabetes technology & therapeutics | 26784129 | Diabetes Technol Ther | 2016 Feb |
| Identification of cerebrospinal fluid and serum metabolomic biomarkers in first episode psychosis patients. | Shang P, Ho AM, Tufvesson-Alm M, Lindberg DR, Grant CW, Orhan F, Eren F, Bhat M, Engberg G, Schwieler L, Fatouros-Bergman H, Imbeault S, Iverson RM, Dasari S, Piehl F, Cervenka S, Sellgren CM, Erhardt S, Choi DS | Translational psychiatry | 35665740 | Transl Psychiatry | 2022 Jun 3 |
| Hepatocytes release ceramide-enriched pro-inflammatory extracellular vesicles in an IRE1α-dependent manner. | Kakazu E, Mauer AS, Yin M, Malhi H | Journal of lipid research | 26621917 | J Lipid Res | 2016 Feb |
| Exercise effects on postprandial glucose metabolism in type 1 diabetes: a triple-tracer approach. | Mallad A, Hinshaw L, Schiavon M, Dalla Man C, Dadlani V, Basu R, Lingineni R, Cobelli C, Johnson ML, Carter R, Kudva YC, Basu A | American journal of physiology. Endocrinology and metabolism | 25898950 | Am J Physiol Endocrinol Metab | 2015 Jun 15 |
| Insulin and IGF-1 receptors regulate FoxO-mediated signaling in muscle proteostasis. | O'Neill BT, Lee KY, Klaus K, Softic S, Krumpoch MT, Fentz J, Stanford KI, Robinson MM, Cai W, Kleinridders A, Pereira RO, Hirshman MF, Abel ED, Accili D, Goodyear LJ, Nair KS, Kahn CR | The Journal of clinical investigation | 27525440 | J Clin Invest | 2016 Sep 1 |
| Interleukin 10 Restores Gastric Emptying, Electrical Activity, and Interstitial Cells of Cajal Networks in Diabetic Mice. | Choi KM, Gibbons SJ, Sha L, Beyder A, Verhulst PJ, Cipriani G, Phillips JE, Bauer AJ, Ordog T, Camp JJ, Ge X, Bharucha AE, Linden DR, Szurszewski JH, Kashyap PC, Farrugia G | Cellular and molecular gastroenterology and hepatology | 27795979 | Cell Mol Gastroenterol Hepatol | 2016 Jul |
| MyoD Regulates Skeletal Muscle Oxidative Metabolism Cooperatively with Alternative NF-κB. | Shintaku J, Peterson JM, Talbert EE, Gu JM, Ladner KJ, Williams DR, Mousavi K, Wang R, Sartorelli V, Guttridge DC | Cell reports | 27705798 | Cell Rep | 2016 Oct 4 |
| Influence of omega-3 fatty acids on skeletal muscle protein metabolism and mitochondrial bioenergetics in older adults. | Lalia AZ, Dasari S, Robinson MM, Abid H, Morse DM, Klaus KA, Lanza IR | Aging | 28379838 | Aging (Albany NY) | 2017 Apr |
| Untargeted metabolomics in primary murine bone marrow stromal cells reveals distinct profile throughout osteoblast differentiation. | Misra BB, Jayapalan S, Richards AK, Helderman RCM, Rendina-Ruedy E | Metabolomics : Official journal of the Metabolomic Society | 34537901 | Metabolomics | 2021 Sep 18 |
| Pyruvate dehydrogenase kinase regulates vascular inflammation in atherosclerosis and increases cardiovascular risk. | Forteza MJ, Berg M, Edsfeldt A, Sun J, Baumgartner R, Kareinen I, Casagrande FB, Hedin U, Zhang S, Vuckovic I, Dzeja PP, Polyzos KA, Gisterå A, Trauelsen M, Schwartz TW, Dib L, Herrmann J, Monaco C, Matic L, Gonçalves I, Ketelhuth DFJ | Cardiovascular research | 36866436 | Cardiovasc Res | 2023 Jul 4 |
| Identification of circulating plasma ceramides as a potential sexually dimorphic biomarker of pancreatic cancer-induced cachexia. | Chakedis JM, Dillhoff ME, Schmidt CR, Rajasekera PV, Evans DC, Williams TM, Guttridge DC, Talbert EE | JCSM rapid communications | 36591536 | JCSM Rapid Commun | 2022 Jul-Dec |
| Insulin Regulation of Lysine and α-Aminoadipic Acid Dynamics and Amino Metabolites in Women With and Without Insulin Resistance. | Chang AY, Asokan AK, Lalia AZ, Sakrikar D, Lanza IR, Petterson XM, Nair KS | Diabetes | 38968429 | Diabetes | 2024 Oct 1 |
| Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. | Sud M, Fahy E, Cotter D, Azam K, Vadivelu I, Burant C, Edison A, Fiehn O, Higashi R, Nair KS, Sumner S, Subramaniam S | Nucleic acids research | 26467476 | Nucleic Acids Res | 2016 Jan 4 |
| Preclinical models for interrogating drug action in human cancers using Stable Isotope Resolved Metabolomics (SIRM). | Lane AN, Higashi RM, Fan TW | Metabolomics : Official journal of the Metabolomic Society | 27489532 | Metabolomics | 2016 Jul |
| Distinctly perturbed metabolic networks underlie differential tumor tissue damages induced by immune modulator β-glucan in a two-case ex vivo non-small-cell lung cancer study. | Fan TW, Warmoes MO, Sun Q, Song H, Turchan-Cholewo J, Martin JT, Mahan A, Higashi RM, Lane AN | Cold Spring Harbor molecular case studies | 27551682 | Cold Spring Harb Mol Case Stud | 2016 Jul |
| Aberrant coordination geometries discovered in the most abundant metalloproteins. | Yao S, Flight RM, Rouchka EC, Moseley HN | Proteins | 28142195 | Proteins | 2017 May |
| Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer. | Zaytseva YY, Rychahou PG, Le AT, Scott TL, Flight RM, Kim JT, Harris J, Liu J, Wang C, Morris AJ, Sivakumaran TA, Fan T, Moseley H, Gao T, Lee EY, Weiss HL, Heuer TS, Kemble G, Evers M | Oncotarget | 29872506 | Oncotarget | 2018 May 15 |
| Applications of Chromatography-Ultra High-Resolution MS for Stable Isotope-Resolved Metabolomics (SIRM) Reconstruction of Metabolic Networks. | Sun Q, Fan TW, Lane AN, Higashi RM | Trends in analytical chemistry : TRAC | 32483395 | Trends Analyt Chem | 2020 Feb |
| Resolving Metabolic Heterogeneity in Experimental Models of the Tumor Microenvironment from a Stable Isotope Resolved Metabolomics Perspective. | Fan TW, Higashi RM, Chernayavskaya Y, Lane AN | Metabolites | 32549391 | Metabolites | 2020 Jun 15 |
| Inosine is an alternative carbon source for CD8(+)-T-cell function under glucose restriction. | Wang T, Gnanaprakasam JNR, Chen X, Kang S, Xu X, Sun H, Liu L, Rodgers H, Miller E, Cassel TA, Sun Q, Vicente-Muñoz S, Warmoes MO, Lin P, Piedra-Quintero ZL, Guerau-de-Arellano M, Cassady KA, Zheng SG, Yang J, Lane AN, Song X, Fan TW, Wang R | Nature metabolism | 32694789 | Nat Metab | 2020 Jul |
| 6-Phosphogluconate dehydrogenase (6PGD), a key checkpoint in reprogramming of regulatory T cells metabolism and function. | Daneshmandi S, Cassel T, Higashi RM, Fan TW, Seth P | eLife | 34709178 | Elife | 2021 Oct 28 |
| Chemoselective detection and discrimination of carbonyl-containing compounds in metabolite mixtures by 1H-detected 15N nuclear magnetic resonance. | Lane AN, Arumugam S, Lorkiewicz PK, Higashi RM, Laulhé S, Nantz MH, Moseley HN, Fan TW | Magnetic resonance in chemistry : MRC | 25616249 | Magn Reson Chem | 2015 May |
| SDHB-Deficient Cancers: The Role of Mutations That Impair Iron Sulfur Cluster Delivery. | Saxena N, Maio N, Crooks DR, Ricketts CJ, Yang Y, Wei MH, Fan TW, Lane AN, Sourbier C, Singh A, Killian JK, Meltzer PS, Vocke CD, Rouault TA, Linehan WM | Journal of the National Cancer Institute | 26719882 | J Natl Cancer Inst | 2016 Jan |
| An obligatory role for neurotensin in high-fat-diet-induced obesity. | Li J, Song J, Zaytseva YY, Liu Y, Rychahou P, Jiang K, Starr ME, Kim JT, Harris JW, Yiannikouris FB, Katz WS, Nilsson PM, Orho-Melander M, Chen J, Zhu H, Fahrenholz T, Higashi RM, Gao T, Morris AJ, Cassis LA, Fan TW, Weiss HL, Dobner PR, Melander O, Jia J, Evers BM | Nature | 27193687 | Nature | 2016 May 19 |
| Quantitative profiling of carbonyl metabolites directly in crude biological extracts using chemoselective tagging and nanoESI-FTMS. | Deng P, Higashi RM, Lane AN, Bruntz RC, Sun RC, Ramakrishnam Raju MV, Nantz MH, Qi Z, Fan TW | The Analyst | 29192912 | Analyst | 2017 Dec 18 |
| Antibacterial Muraymycins from Mutant Strains of Streptomyces sp. NRRL 30471. | Cui Z, Wang X, Koppermann S, Thorson JS, Ducho C, Van Lanen SG | Journal of natural products | 29553733 | J Nat Prod | 2018 Apr 27 |
| Targeting lactate dehydrogenase--a inhibits tumorigenesis and tumor progression in mouse models of lung cancer and impacts tumor-initiating cells. | Xie H, Hanai J, Ren JG, Kats L, Burgess K, Bhargava P, Signoretti S, Billiard J, Duffy KJ, Grant A, Wang X, Lorkiewicz PK, Schatzman S, Bousamra M 2nd, Lane AN, Higashi RM, Fan TW, Pandolfi PP, Sukhatme VP, Seth P | Cell metabolism | 24726384 | Cell Metab | 2014 May 6 |
| Regulation of hepatic glutamine metabolism by miR-122. | Sengupta D, Cassel T, Teng KY, Aljuhani M, Chowdhary VK, Hu P, Zhang X, Fan TW, Ghoshal K | Molecular metabolism | 32180557 | Mol Metab | 2020 Apr |
| Inhibition of Anaplerotic Glutaminolysis Underlies Selenite Toxicity in Human Lung Cancer. | Bruntz RC, Belshoff AC, Zhang Y, Macedo JKA, Higashi RM, Lane AN, Fan TW | Proteomics | 31298457 | Proteomics | 2019 Nov |
| De novo synthesis of serine and glycine fuels purine nucleotide biosynthesis in human lung cancer tissues. | Fan TWM, Bruntz RC, Yang Y, Song H, Chernyavskaya Y, Deng P, Zhang Y, Shah PP, Beverly LJ, Qi Z, Mahan AL, Higashi RM, Dang CV, Lane AN | The Journal of biological chemistry | 31337706 | J Biol Chem | 2019 Sep 6 |
| NMR Methods for Determining Lipid Turnover via Stable Isotope Resolved Metabolomics. | Lin P, Dai L, Crooks DR, Neckers LM, Higashi RM, Fan TW, Lane AN | Metabolites | 33805301 | Metabolites | 2021 Mar 29 |
| NMR and MS-based Stable Isotope-Resolved Metabolomics and Applications in Cancer Metabolism. | Lane AN, Higashi RM, Fan TW | Trends in analytical chemistry : TRAC | 32523238 | Trends Analyt Chem | 2019 Nov |
| Pyruvate carboxylase is critical for non-small-cell lung cancer proliferation. | Sellers K, Fox MP, Bousamra M 2nd, Slone SP, Higashi RM, Miller DM, Wang Y, Yan J, Yuneva MO, Deshpande R, Lane AN, Fan TW | The Journal of clinical investigation | 25607840 | J Clin Invest | 2015 Feb |
| Ketogenesis contributes to intestinal cell differentiation. | Wang Q, Zhou Y, Rychahou P, Fan TW, Lane AN, Weiss HL, Evers BM | Cell death and differentiation | 27935584 | Cell Death Differ | 2017 Mar |
| Exercise-induced changes in myocardial glucose utilization during periods of active cardiac growth. | Fulghum KL, Collins HE, Lorkiewicz PK, Cassel TA, Fan TWM, Hill BG | Journal of molecular and cellular cardiology | 38703412 | J Mol Cell Cardiol | 2024 Jun |
| Regulation of mammalian nucleotide metabolism and biosynthesis. | Lane AN, Fan TW | Nucleic acids research | 25628363 | Nucleic Acids Res | 2015 Feb 27 |
| Inference of cancer mechanisms through computational systems analysis. | Qi Z, Voit EO | Molecular bioSystems | 28112324 | Mol Biosyst | 2017 Feb 28 |
| Probing the metabolic phenotype of breast cancer cells by multiple tracer stable isotope resolved metabolomics. | Lane AN, Tan J, Wang Y, Yan J, Higashi RM, Fan TW | Metabolic engineering | 28163219 | Metab Eng | 2017 Sep |
| Perspectives and expectations in structural bioinformatics of metalloproteins. | Yao S, Flight RM, Rouchka EC, Moseley HN | Proteins | 28168746 | Proteins | 2017 May |
| Overexpression of the human DEK oncogene reprograms cellular metabolism and promotes glycolysis. | Matrka MC, Watanabe M, Muraleedharan R, Lambert PF, Lane AN, Romick-Rosendale LE, Wells SI | PloS one | 28558019 | PLoS One | 2017 |
| The mitochondrial retrograde signaling regulates Wnt signaling to promote tumorigenesis in colon cancer. | Wen YA, Xiong X, Scott T, Li AT, Wang C, Weiss HL, Tan L, Bradford E, Fan TWM, Chandel NS, Barrett TA, Gao T | Cell death and differentiation | 30659235 | Cell Death Differ | 2019 Oct |
| Metabolic reprogramming and Notch activity distinguish between non-small cell lung cancer subtypes. | Sellers K, Allen TD, Bousamra M 2nd, Tan J, Méndez-Lucas A, Lin W, Bah N, Chernyavskaya Y, MacRae JI, Higashi RM, Lane AN, Fan TW, Yuneva MO | British journal of cancer | 31114017 | Br J Cancer | 2019 Jul |
| Inferring Gene Regulatory Networks of Metabolic Enzymes Using Gradient Boosted Trees. | Zhang Y, Zhang X, Lane AN, Fan TW, Liu J | IEEE journal of biomedical and health informatics | 31380773 | IEEE J Biomed Health Inform | 2020 May |
| A Micro-Scale Analytical Method for Determining Glycogen Turnover by NMR and FTMS. | Scott TL, Zhu J, Cassel TA, Vicente-Muñoz S, Lin P, Higashi RM, Lane AN, Fan TW | Metabolites | 36005633 | Metabolites | 2022 Aug 18 |
| Untargeted Lipidomics of Non-Small Cell Lung Carcinoma Demonstrates Differentially Abundant Lipid Classes in Cancer vs. Non-Cancer Tissue. | Mitchell JM, Flight RM, Moseley HNB | Metabolites | 34822397 | Metabolites | 2021 Oct 28 |
| Improved segmented-scan spectral stitching for stable isotope resolved metabolomics (SIRM) by ultra-high-resolution Fourier transform mass spectrometry. | Kang WY, Thompson PT, El-Amouri SS, Fan TWM, Lane AN, Higashi RM | Analytica chimica acta | 31409459 | Anal Chim Acta | 2019 Nov 8 |
| In vivo deep network tracing reveals phosphofructokinase-mediated coordination of biosynthetic pathway activity in the myocardium. | Fulghum KL, Audam TN, Lorkiewicz PK, Zheng Y, Merchant M, Cummins TD, Dean WL, Cassel TA, Fan TWM, Hill BG | Journal of molecular and cellular cardiology | 34487754 | J Mol Cell Cardiol | 2022 Jan |
| Multifocal Renal Cell Carcinomas With Somatic IDH2 Mutation: Report of a Previously Undescribed Neoplasm. | Merino MJ, Ricketts CJ, Moreno V, Yang Y, Fan TWM, Lane AN, Meltzer PS, Vocke CD, Crooks DR, Linehan WM | The American journal of surgical pathology | 33165095 | Am J Surg Pathol | 2021 Jan |
| Fumarate hydratase-deficient renal cell carcinoma cells respond to asparagine by activation of the unfolded protein response and stimulation of the hexosamine biosynthetic pathway. | Panarsky R, Crooks DR, Lane AN, Yang Y, Cassel TA, Fan TW, Linehan WM, Moscow JA | Cancer & metabolism | 32774853 | Cancer Metab | 2020 |
| Polarization and β-Glucan Reprogram Immunomodulatory Metabolism in Human Macrophages and Ex Vivo in Human Lung Cancer Tissues. | Fan TW, Daneshmandi S, Cassel TA, Uddin MB, Sledziona J, Thompson PT, Lin P, Higashi RM, Lane AN | Journal of immunology (Baltimore, Md. : 1950) | 36150727 | J Immunol | 2022 Nov 1 |
| Stable isotope-resolved metabolomics analyses of metabolic phenotypes reveal variable glutamine metabolism in different patient-derived models of non-small cell lung cancer from a single patient. | Kinslow CJ, Ll MB, Cai Y, Yan J, Lorkiewicz PK, Al-Attar A, Tan J, Higashi RM, Lane AN, Fan TW | Metabolomics : Official journal of the Metabolomic Society | 39068202 | Metabolomics | 2024 Jul 27 |
| Applications of NMR spectroscopy to systems biochemistry. | Fan TW, Lane AN | Progress in nuclear magnetic resonance spectroscopy | 26952191 | Prog Nucl Magn Reson Spectrosc | 2016 Feb |
| Stable Isotope Resolved Metabolomics Studies in Ex Vivo TIssue Slices. | Fan TW, Lane AN, Higashi RM | Bio-protocol | 27158639 | Bio Protoc | 2016 Feb 5 |
| Mitochondrial superoxide targets energy metabolism to modulate epigenetic regulation of NRF2-mediated transcription. | Dhar SK, Scott T, Wang C, Fan TWM, St Clair DK | Free radical biology & medicine | 34968705 | Free Radic Biol Med | 2022 Feb 1 |
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| Metabolite profile analysis reveals functional effects of 28-day vitamin B-6 restriction on one-carbon metabolism and tryptophan catabolic pathways in healthy men and women. | da Silva VR, Rios-Avila L, Lamers Y, Ralat MA, Midttun Ø, Quinlivan EP, Garrett TJ, Coats B, Shankar MN, Percival SS, Chi YY, Muller KE, Ueland PM, Stacpoole PW, Gregory JF 3rd | The Journal of nutrition | 23966327 | J Nutr | 2013 Nov |
| Skeletal muscle overexpression of nicotinamide phosphoribosyl transferase in mice coupled with voluntary exercise augments exercise endurance. | Costford SR, Brouwers B, Hopf ME, Sparks LM, Dispagna M, Gomes AP, Cornnell HH, Petucci C, Phelan P, Xie H, Yi F, Walter GA, Osborne TF, Sinclair DA, Mynatt RL, Ayala JE, Gardell SJ, Smith SR | Molecular metabolism | 29146412 | Mol Metab | 2018 Jan |
| Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation. | Koelmel JP, Kroeger NM, Gill EL, Ulmer CZ, Bowden JA, Patterson RE, Yost RA, Garrett TJ | Journal of the American Society for Mass Spectrometry | 28265968 | J Am Soc Mass Spectrom | 2017 May |
| Use of Charged Nanoparticles in NMR-Based Metabolomics for Spectral Simplification and Improved Metabolite Identification. | Zhang B, Xie M, Bruschweiler-Li L, Bingol K, Brüschweiler R | Analytical chemistry | 26087125 | Anal Chem | 2015 Jul 21 |
| Cold adaptation shapes the robustness of metabolic networks in Drosophila melanogaster. | Williams CM, Watanabe M, Guarracino MR, Ferraro MB, Edison AS, Morgan TJ, Boroujerdi AF, Hahn DA | Evolution; international journal of organic evolution | 25308124 | Evolution | 2014 Dec |
| Untargeted metabolomic analysis in naturally occurring canine diabetes mellitus identifies similarities to human Type 1 Diabetes. | O'Kell AL, Garrett TJ, Wasserfall C, Atkinson MA | Scientific reports | 28842637 | Sci Rep | 2017 Aug 25 |
| Isotopic Ratio Outlier Analysis of the S. cerevisiae Metabolome Using Accurate Mass Gas Chromatography/Time-of-Flight Mass Spectrometry: A New Method for Discovery. | Qiu Y, Moir R, Willis I, Beecher C, Tsai YH, Garrett TJ, Yost RA, Kurland IJ | Analytical chemistry | 26820234 | Anal Chem | 2016 Mar 1 |
| The future of NMR-based metabolomics. | Markley JL, Brüschweiler R, Edison AS, Eghbalnia HR, Powers R, Raftery D, Wishart DS | Current opinion in biotechnology | 27580257 | Curr Opin Biotechnol | 2017 Feb |
| Comparison of blood plasma sample preparation methods for combined LC-MS lipidomics and metabolomics. | Patterson RE, Ducrocq AJ, McDougall DJ, Garrett TJ, Yost RA | Journal of chromatography. B, Analytical technologies in the biomedical and life sciences | 26343017 | J Chromatogr B Analyt Technol Biomed Life Sci | 2015 Oct 1 |
| An overview of methods using (13)C for improved compound identification in metabolomics and natural products. | Clendinen CS, Stupp GS, Ajredini R, Lee-McMullen B, Beecher C, Edison AS | Frontiers in plant science | 26379677 | Front Plant Sci | 2015 |
| Two elephants in the room: new hybrid nuclear magnetic resonance and mass spectrometry approaches for metabolomics. | Bingol K, Brüschweiler R | Current opinion in clinical nutrition and metabolic care | 26154280 | Curr Opin Clin Nutr Metab Care | 2015 Sep |
| Effects of β-caryophyllene and oxygen availability on cholesterol and fatty acids in breast cancer cells. | Frost CJ, Ramirez-Mata A, Khattri RB, Merritt ME, Frost SC | PloS one | 36893152 | PLoS One | 2023 |
| DAXX drives de novo lipogenesis and contributes to tumorigenesis. | Mahmud I, Tian G, Wang J, Hutchinson TE, Kim BJ, Awasthee N, Hale S, Meng C, Moore A, Zhao L, Lewis JE, Waddell A, Wu S, Steger JM, Lydon ML, Chait A, Zhao LY, Ding H, Li JL, Purayil HT, Huo Z, Daaka Y, Garrett TJ, Liao D | Nature communications | 37045819 | Nat Commun | 2023 Apr 12 |
| Lower Concentrations of Circulating Medium and Long-Chain Acylcarnitines Characterize Insulin Resistance in Persons with HIV. | Bailin SS, Jenkins CA, Petucci C, Culver JA, Shepherd BE, Fessel JP, Hulgan T, Koethe JR | AIDS research and human retroviruses | 29607651 | AIDS Res Hum Retroviruses | 2018 Jun |
| The NQO1 bioactivatable drug, β-lapachone, alters the redox state of NQO1+ pancreatic cancer cells, causing perturbation in central carbon metabolism. | Silvers MA, Deja S, Singh N, Egnatchik RA, Sudderth J, Luo X, Beg MS, Burgess SC, DeBerardinis RJ, Boothman DA, Merritt ME | The Journal of biological chemistry | 28916726 | J Biol Chem | 2017 Nov 3 |
| Pioglitazone improves hepatic mitochondrial function in a mouse model of nonalcoholic steatohepatitis. | Kalavalapalli S, Bril F, Koelmel JP, Abdo K, Guingab J, Andrews P, Li WY, Jose D, Yost RA, Frye RF, Garrett TJ, Cusi K, Sunny NE | American journal of physiology. Endocrinology and metabolism | 29634314 | Am J Physiol Endocrinol Metab | 2018 Aug 1 |
| Elevated Nicotinamide Phosphoribosyl Transferase in Skeletal Muscle Augments Exercise Performance and Mitochondrial Respiratory Capacity Following Exercise Training. | Brouwers B, Stephens NA, Costford SR, Hopf ME, Ayala JE, Yi F, Xie H, Li JL, Gardell SJ, Sparks LM, Smith SR | Frontiers in physiology | 29942262 | Front Physiol | 2018 |
| Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma. | Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando AM, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, Breitkopf SB, Cajka T, Cazenave-Gassiot A, Checa A, Cinel MA, Colas RA, Cremers S, Dennis EA, Evans JE, Fauland A, Fiehn O, Gardner MS, Garrett TJ, Gotlinger KH, Han J, Huang Y, Neo AH, Hyötyläinen T, Izumi Y, Jiang H, Jiang H, Jiang J, Kachman M, Kiyonami R, Klavins K, Klose C, Köfeler HC, Kolmert J, Koal T, Koster G, Kuklenyik Z, Kurland IJ, Leadley M, Lin K, Maddipati KR, McDougall D, Meikle PJ, Mellett NA, Monnin C, Moseley MA, Nandakumar R, Oresic M, Patterson R, Peake D, Pierce JS, Post M, Postle AD, Pugh R, Qiu Y, Quehenberger O, Ramrup P, Rees J, Rembiesa B, Reynaud D, Roth MR, Sales S, Schuhmann K, Schwartzman ML, Serhan CN, Shevchenko A, Somerville SE, St John-Williams L, Surma MA, Takeda H, Thakare R, Thompson JW, Torta F, Triebl A, Trötzmüller M, Ubhayasekera SJK, Vuckovic D, Weir JM, Welti R, Wenk MR, Wheelock CE, Yao L, Yuan M, Zhao XH, Zhou S | Journal of lipid research | 28986437 | J Lipid Res | 2017 Dec |
| Pilot Study of Metabolomics and Psychoneurological Symptoms in Women With Early Stage Breast Cancer. | Lyon DE, Starkweather A, Yao Y, Garrett T, Kelly DL, Menzies V, Dereziński P, Datta S, Kumar S, Jackson-Cook C | Biological research for nursing | 29258398 | Biol Res Nurs | 2018 Mar |
| Lipotoxicity in steatohepatitis occurs despite an increase in tricarboxylic acid cycle activity. | Patterson RE, Kalavalapalli S, Williams CM, Nautiyal M, Mathew JT, Martinez J, Reinhard MK, McDougall DJ, Rocca JR, Yost RA, Cusi K, Garrett TJ, Sunny NE | American journal of physiology. Endocrinology and metabolism | 26814015 | Am J Physiol Endocrinol Metab | 2016 Apr 1 |
| Metabolic Changes Are Associated with Melphalan Resistance in Multiple Myeloma. | Koomen DC, Meads MB, Magaletti DM, Guingab-Cagmat JD, Oliveira PS, Fang B, Liu M, Welsh EA, Meke LE, Jiang Z, Hampton OA, Tungesvik A, De Avila G, Alugubelli RR, Nishihori T, Silva AS, Eschrich SA, Garrett TJ, Koomen JM, Shain KH | Journal of proteome research | 34014671 | J Proteome Res | 2021 Jun 4 |
| Isolated murine skeletal muscles utilize pyruvate over glucose for oxidation. | Khattri RB, Puglise J, Ryan TE, Walter GA, Merritt ME, Barton ER | Metabolomics : Official journal of the Metabolomic Society | 36480060 | Metabolomics | 2022 Dec 8 |
| Intraspecific variation in polar and nonpolar metabolite profiles of a threatened Caribbean coral. | Henry JA, Khattri RB, Guingab-Cagmat J, Merritt ME, Garrett TJ, Patterson JT, Lohr KE | Metabolomics : Official journal of the Metabolomic Society | 34143280 | Metabolomics | 2021 Jun 18 |
| Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values. | Koelmel JP, Cochran JA, Ulmer CZ, Levy AJ, Patterson RE, Olsen BC, Yost RA, Bowden JA, Garrett TJ | BMC bioinformatics | 31035918 | BMC Bioinformatics | 2019 Apr 29 |
| Rapid Quantitation of 25-Hydroxyvitamin D2 and D3 in Human Serum Using Liquid Chromatography/Drift Tube Ion Mobility-Mass Spectrometry. | Oranzi NR, Lei J, Kemperman RHJ, Chouinard CD, Holmquist B, Garrett TJ, Yost RA | Analytical chemistry | 31592654 | Anal Chem | 2019 Nov 5 |
| Metabolomic profiles differ among unique genotypes of a threatened Caribbean coral. | Lohr KE, Khattri RB, Guingab-Cagmat J, Camp EF, Merritt ME, Garrett TJ, Patterson JT | Scientific reports | 30988456 | Sci Rep | 2019 Apr 15 |
| Remodeling of substrate consumption in the murine sTAC model of heart failure. | Turer A, Altamirano F, Schiattarella GG, May H, Gillette TG, Malloy CR, Merritt ME | Journal of molecular and cellular cardiology | 31340162 | J Mol Cell Cardiol | 2019 Sep |
| Influence of Experimental Conditions on the Ratio of 25-Hydroxyvitamin D(3) Conformers for Validating a Liquid Chromatography/Ion Mobility-Mass Spectrometry Method for Routine Quantitation. | Oranzi NR, Polfer NC, Lei J, Yost RA | Analytical chemistry | 30379063 | Anal Chem | 2018 Nov 20 |
| A comprehensive analysis of myocardial substrate preference emphasizes the need for a synchronized fluxomic/metabolomic research design. | Ragavan M, Kirpich A, Fu X, Burgess SC, McIntyre LM, Merritt ME | American journal of physiology. Heart and circulatory physiology | 28411229 | Am J Physiol Heart Circ Physiol | 2017 Jun 1 |
| Measurement of Pyridine Nucleotides in Biological Samples Using LC-MS/MS. | Petucci C, Culver JA, Kapoor N, Sessions EH, Divlianska D, Gardell SJ | Methods in molecular biology (Clifton, N.J.) | 31127548 | Methods Mol Biol | 2019 |
| Gut microbiota and serum metabolite differences in African Americans and White Americans with high blood pressure. | Walejko JM, Kim S, Goel R, Handberg EM, Richards EM, Pepine CJ, Raizada MK | International journal of cardiology | 30049487 | Int J Cardiol | 2018 Nov 15 |
| Untargeted metabolomic analysis in non-fasted diabetic dogs by UHPLC-HRMS. | O'Kell AL, Garrett TJ, Wasserfall C, Atkinson MA | Metabolomics : Official journal of the Metabolomic Society | 30830416 | Metabolomics | 2019 Jan 22 |
| Age-dependent changes in metabolite profile and lipid saturation in dystrophic mice. | Lee-McMullen B, Chrzanowski SM, Vohra R, Forbes SC, Vandenborne K, Edison AS, Walter GA | NMR in biomedicine | 30848538 | NMR Biomed | 2019 May |
| Ultrahigh-Performance Liquid Chromatography-High-Resolution Mass Spectrometry Metabolomics and Lipidomics Study of Stool from Transgenic Parkinson's Disease Mice Following Immunotherapy. | Gill EL, Koelmel JP, Meke L, Yost RA, Garrett TJ, Okun MS, Flores C, Vedam-Mai V | Journal of proteome research | 31713431 | J Proteome Res | 2020 Jan 3 |
| Tissue-specific analysis of lipid species in Drosophila during overnutrition by UHPLC-MS/MS and MALDI-MSI. | Tuthill BF 2nd, Searcy LA, Yost RA, Musselman LP | Journal of lipid research | 31900315 | J Lipid Res | 2020 Mar |
| Metabolomics of primary cutaneous melanoma and matched adjacent extratumoral microenvironment. | Taylor NJ, Gaynanova I, Eschrich SA, Welsh EA, Garrett TJ, Beecher C, Sharma R, Koomen JM, Smalley KSM, Messina JL, Kanetsky PA | PloS one | 33108391 | PLoS One | 2020 |
| Unified and isomer-specific NMR metabolomics database for the accurate analysis of (13)C-(1)H HSQC spectra. | Bingol K, Li DW, Bruschweiler-Li L, Cabrera OA, Megraw T, Zhang F, Brüschweiler R | ACS chemical biology | 25333826 | ACS Chem Biol | 2015 Feb 20 |
| NMR/MS Translator for the Enhanced Simultaneous Analysis of Metabolomics Mixtures by NMR Spectroscopy and Mass Spectrometry: Application to Human Urine. | Bingol K, Brüschweiler R | Journal of proteome research | 25881480 | J Proteome Res | 2015 Jun 5 |
| Metabolomic Analysis of Oxidative and Glycolytic Skeletal Muscles by Matrix-Assisted Laser Desorption/IonizationMass Spectrometric Imaging (MALDI MSI). | Tsai YH, Garrett TJ, Carter CS, Yost RA | Journal of the American Society for Mass Spectrometry | 25893271 | J Am Soc Mass Spectrom | 2015 Jun |
| Targeted metabolomics and mathematical modeling demonstrate that vitamin B-6 restriction alters one-carbon metabolism in cultured HepG2 cells. | da Silva VR, Ralat MA, Quinlivan EP, DeRatt BN, Garrett TJ, Chi YY, Frederik Nijhout H, Reed MC, Gregory JF 3rd | American journal of physiology. Endocrinology and metabolism | 24824655 | Am J Physiol Endocrinol Metab | 2014 Jul 1 |
| ¹³C NMR metabolomics: applications at natural abundance. | Clendinen CS, Lee-McMullen B, Williams CM, Stupp GS, Vandenborne K, Hahn DA, Walter GA, Edison AS | Analytical chemistry | 25140385 | Anal Chem | 2014 Sep 16 |
| Regulation of renal NaDC1 expression and citrate excretion by NBCe1-A. | Osis G, Webster KL, Harris AN, Lee HW, Chen C, Fang L, Romero MF, Khattri RB, Merritt ME, Verlander JW, Weiner ID | American journal of physiology. Renal physiology | 31188034 | Am J Physiol Renal Physiol | 2019 Aug 1 |
| Obesity-Dependent Adipokine Chemerin Suppresses Fatty Acid Oxidation to Confer Ferroptosis Resistance. | Tan SK, Mahmud I, Fontanesi F, Puchowicz M, Neumann CKA, Griswold AJ, Patel R, Dispagna M, Ahmed HH, Gonzalgo ML, Brown JM, Garrett TJ, Welford SM | Cancer discovery | 33757970 | Cancer Discov | 2021 Aug |
| NIST lipidomics workflow questionnaire: an assessment of community-wide methodologies and perspectives. | Bowden JA, Ulmer CZ, Jones CM, Koelmel JP, Yost RA | Metabolomics : Official journal of the Metabolomic Society | 30830346 | Metabolomics | 2018 Mar 20 |
| A Targeted Metabolomics Assay to Measure Eight Purines in the Diet of Common Bottlenose Dolphins, Tursiops truncatus. | Ardente AJ, Garrett TJ, Wells RS, Walsh M, Smith CR, Colee J, Hill RC | Journal of chromatography & separation techniques | 27904786 | J Chromatogr Sep Tech | 2016 Oct |
| Experimental and Theoretical Investigation of Sodiated Multimers of Steroid Epimers with Ion Mobility-Mass Spectrometry. | Chouinard CD, Cruzeiro VWD, Roitberg AE, Yost RA | Journal of the American Society for Mass Spectrometry | 27914014 | J Am Soc Mass Spectrom | 2017 Feb |
| Precast Gelatin-Based Molds for Tissue Embedding Compatible with Mass Spectrometry Imaging. | Gill EL, Yost RA, Vedam-Mai V, Garrett TJ | Analytical chemistry | 27935272 | Anal Chem | 2017 Jan 3 |
| Ion Mobility in Clinical Analysis: Current Progress and Future Perspectives. | Chouinard CD, Wei MS, Beekman CR, Kemperman RH, Yost RA | Clinical chemistry | 26585928 | Clin Chem | 2016 Jan |
| Proteometabolomics of Melphalan Resistance in Multiple Myeloma. | Koomen DC, Guingab-Cagmat JD, Oliveira PS, Fang B, Liu M, Welsh EA, Meads MB, Nguyen T, Meke L, Eschrich SA, Shain KH, Garrett TJ, Koomen JM | Methods in molecular biology (Clifton, N.J.) | 31127562 | Methods Mol Biol | 2019 |
| Customized metabolomics database for the analysis of NMR ¹H-¹H TOCSY and ¹³C-¹H HSQC-TOCSY spectra of complex mixtures. | Bingol K, Bruschweiler-Li L, Li DW, Brüschweiler R | Analytical chemistry | 24773139 | Anal Chem | 2014 Jun 3 |
| SECIMTools: a suite of metabolomics data analysis tools. | Kirpich AS, Ibarra M, Moskalenko O, Fear JM, Gerken J, Mi X, Ashrafi A, Morse AM, McIntyre LM | BMC bioinformatics | 29678131 | BMC Bioinformatics | 2018 Apr 20 |
| In vivo hyperpolarization transfer in a clinical MRI scanner. | von Morze C, Reed GD, Larson PE, Mammoli D, Chen AP, Tropp J, Van Criekinge M, Ohliger MA, Kurhanewicz J, Vigneron DB, Merritt ME | Magnetic resonance in medicine | 29488244 | Magn Reson Med | 2018 Aug |
| Portable FAIMS: Applications and Future Perspectives. | Costanzo MT, Boock JJ, Kemperman RHJ, Wei MS, Beekman CR, Yost RA | International journal of mass spectrometry | 29335669 | Int J Mass Spectrom | 2017 Nov |
| l-Carnitine Inhibits Lipopolysaccharide-Induced Nitric Oxide Production of SIM-A9 Microglia Cells. | Gill EL, Raman S, Yost RA, Garrett TJ, Vedam-Mai V | ACS chemical neuroscience | 29370524 | ACS Chem Neurosci | 2018 May 16 |
| Use of principle component analysis to quantitatively score the equine metabolic syndrome phenotype in an Arabian horse population. | Lewis SL, Holl HM, Long MT, Mallicote MF, Brooks SA | PloS one | 30001422 | PLoS One | 2018 |
| Cancer in the crosshairs: targeting cancer metabolism with hyperpolarized carbon-13 MRI technology. | von Morze C, Merritt ME | NMR in biomedicine | 29870085 | NMR Biomed | 2019 Oct |
| Considerations when choosing a genetic model organism for metabolomics studies. | Reed LK, Baer CF, Edison AS | Current opinion in chemical biology | 28025166 | Curr Opin Chem Biol | 2017 Feb |
| Metabolomic Evaluation of the Consequences of Plasma Cystathionine Elevation in Adults with Stable Angina Pectoris. | DeRatt BN, Ralat MA, Lysne V, Tayyari F, Dhar I, Edison AS, Garrett TJ, Midttun Ø, Ueland PM, Nygård OK, Gregory JF 3rd | The Journal of nutrition | 28794210 | J Nutr | 2017 Sep |
| Comparison of global metabolite extraction strategies for soybeans using UHPLC-HRMS. | Mahmud I, Sternberg S, Williams M, Garrett TJ | Analytical and bioanalytical chemistry | 28844081 | Anal Bioanal Chem | 2017 Oct |
| UHPLC-Q-Orbitrap-HRMS-based global metabolomics reveal metabolome modifications in plasma of young women after cranberry juice consumption. | Liu H, Garrett TJ, Su Z, Khoo C, Gu L | The Journal of nutritional biochemistry | 28433923 | J Nutr Biochem | 2017 Jul |
| Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion. | Verhoeven KJF, Verbon EH, van Gurp TP, Oplaat C, Ferreira de Carvalho J, Morse AM, Stahl M, Macel M, McIntyre LM | The New phytologist | 29034954 | New Phytol | 2018 Jan |
| LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data. | Koelmel JP, Kroeger NM, Ulmer CZ, Bowden JA, Patterson RE, Cochran JA, Beecher CWW, Garrett TJ, Yost RA | BMC bioinformatics | 28693421 | BMC Bioinformatics | 2017 Jul 10 |
| The effect of Ho(3+) doping on (13)C dynamic nuclear polarization at 5 T. | Sirusi AA, Suh EH, Kovacs Z, Merritt ME | Physical chemistry chemical physics : PCCP | 29242884 | Phys Chem Chem Phys | 2018 Jan 3 |
| Disrupting the MYC-TFEB Circuit Impairs Amino Acid Homeostasis and Provokes Metabolic Anergy. | Fernandez MR, Schaub FX, Yang C, Li W, Yun S, Schaub SK, Dorsey FC, Liu M, Steeves MA, Ballabio A, Tzankov A, Chen Z, Koomen JM, Berglund AE, Cleveland JL | Cancer research | 35149590 | Cancer Res | 2022 Apr 1 |
| Loss of Stearoyl-CoA desaturase 1 leads to cardiac dysfunction and lipotoxicity. | Tuthill Ii BF, Quaglia CJ, O'Hara E, Musselman LP | The Journal of experimental biology | 34423827 | J Exp Biol | 2021 Sep 15 |
| Integrated RNA and metabolite profiling of urine liquid biopsies for prostate cancer biomarker discovery. | Lee B, Mahmud I, Marchica J, Dereziński P, Qi F, Wang F, Joshi P, Valerio F, Rivera I, Patel V, Pavlovich CP, Garrett TJ, Schroth GP, Sun Y, Perera RJ | Scientific reports | 32111915 | Sci Rep | 2020 Feb 28 |
| Design and Implementation of a Dual-Probe Microsampling Apparatus for the Direct Analysis of Adherent Mammalian Cells by Ion Mobility-Mass Spectrometry. | Domenick TM, Vedam-Mai V, Yost RA | Analytical chemistry | 32786468 | Anal Chem | 2020 Sep 1 |
| Longitudinal Changes of One-Carbon Metabolites and Amino Acid Concentrations during Pregnancy in the Women First Maternal Nutrition Trial. | Gilley SP, Weaver NE, Sticca EL, Jambal P, Palacios A, Kerns ME, Anand P, Kemp JF, Westcott JE, Figueroa L, Garcés AL, Ali SA, Pasha O, Saleem S, Hambidge KM, Hendricks AE, Krebs NF, Borengasser SJ | Current developments in nutrition | 32175519 | Curr Dev Nutr | 2020 Jan |
| Environmental lipidomics: understanding the response of organisms and ecosystems to a changing world. | Koelmel JP, Napolitano MP, Ulmer CZ, Vasiliou V, Garrett TJ, Yost RA, Prasad MNV, Godri Pollitt KJ, Bowden JA | Metabolomics : Official journal of the Metabolomic Society | 32307636 | Metabolomics | 2020 Apr 19 |
| Exogenous Fatty Acids Remodel Staphylococcus aureus Lipid Composition through Fatty Acid Kinase. | DeMars Z, Singh VK, Bose JL | Journal of bacteriology | 32366591 | J Bacteriol | 2020 Jun 25 |
| The TAS1R2 sweet taste receptor regulates skeletal muscle mass and fitness. | Serrano J, Boyd J, Mason C, Smith KR, Karolyi K, Kondo S, Brown IS, Maurya SK, Meshram NN, Serna V, Gilger J, Branch DA, Gardell SJ, Baskin KK, Ayala JE, Pratley RE, Goodpaster BH, Coen PM, Kyriazis GA | Research square | 36798161 | Res Sq | 2023 Feb 9 |
| Segmented Flow Strategies for Integrating Liquid Chromatography-Mass Spectrometry with Nuclear Magnetic Resonance for Lipidomics. | Lei J, Mahar R, Chang MC, Collins J, Merritt ME, Garrett TJ, Yost RA | Analytical chemistry | 36630396 | Anal Chem | 2023 Jan 11 |
| Obesity Increases Mortality and Modulates the Lung Metabolome during Pandemic H1N1 Influenza Virus Infection in Mice. | Milner JJ, Rebeles J, Dhungana S, Stewart DA, Sumner SC, Meyers MH, Mancuso P, Beck MA | Journal of immunology (Baltimore, Md. : 1950) | 25862817 | J Immunol | 2015 May 15 |
| Analysis of human serum and whole blood for mineral content by ICP-MS and ICP-OES: development of a mineralomics method. | Harrington JM, Young DJ, Essader AS, Sumner SJ, Levine KE | Biological trace element research | 24917052 | Biol Trace Elem Res | 2014 Jul |
| Development of an analytical method for assessment of silver nanoparticle content in biological matrices by inductively coupled plasma mass spectrometry. | Poitras EP, Levine MA, Harrington JM, Essader AS, Fennell TR, Snyder RW, Black SL, Sumner SS, Levine KE | Biological trace element research | 25308764 | Biol Trace Elem Res | 2015 Feb |
| Exposure to inorganic arsenic and its methylated metabolites alters metabolomics profiles in INS-1 832/13 insulinoma cells and isolated pancreatic islets. | Li YY, Douillet C, Huang M, Beck R, Sumner SJ, Styblo M | Archives of toxicology | 32277266 | Arch Toxicol | 2020 Jun |
| Metabolomics to reveal biomarkers and pathways of preterm birth: a systematic review and epidemiologic perspective. | Carter RA, Pan K, Harville EW, McRitchie S, Sumner S | Metabolomics : Official journal of the Metabolomic Society | 31506796 | Metabolomics | 2019 Sep 10 |
| Intravenous administration of three multiwalled carbon nanotubes to female rats and their effect on urinary biochemical profile. | Mortensen NP, Snyder RW, Pathmasiri W, Moreno Caffaro M, Sumner SJ, Fennell TR | Journal of applied toxicology : JAT | 34569639 | J Appl Toxicol | 2022 Mar |
| Fecal metabolomics reveals products of dysregulated proteolysis and altered microbial metabolism in obesity-related osteoarthritis. | Rushing BR, McRitchie S, Arbeeva L, Nelson AE, Azcarate-Peril MA, Li YY, Qian Y, Pathmasiri W, Sumner SCJ, Loeser RF | Osteoarthritis and cartilage | 34718137 | Osteoarthritis Cartilage | 2022 Jan |
| Neonatal Metabolomic Profiles Related to Prenatal Arsenic Exposure. | Laine JE, Bailey KA, Olshan AF, Smeester L, Drobná Z, Stýblo M, Douillet C, García-Vargas G, Rubio-Andrade M, Pathmasiri W, McRitchie S, Sumner SJ, Fry RC | Environmental science & technology | 27997141 | Environ Sci Technol | 2017 Jan 3 |
| Using Metabolomics to Investigate Biomarkers of Drug Addiction. | Ghanbari R, Sumner S | Trends in molecular medicine | 29397321 | Trends Mol Med | 2018 Feb |
| Metabolomics Analysis of Hormone-Responsive and Triple-Negative Breast Cancer Cell Responses to Paclitaxel Identify Key Metabolic Differences. | Stewart DA, Winnike JH, McRitchie SL, Clark RF, Pathmasiri WW, Sumner SJ | Journal of proteome research | 27447733 | J Proteome Res | 2016 Sep 2 |
| Meprin β metalloproteases associated with differential metabolite profiles in the plasma and urine of mice with type 1 diabetes and diabetic nephropathy. | Gooding J, Cao L, Whitaker C, Mwiza JM, Fernander M, Ahmed F, Acuff Z, McRitchie S, Sumner S, Ongeri EM | BMC nephrology | 31023251 | BMC Nephrol | 2019 Apr 25 |
| Distribution and biomarkers of carbon-14-labeled fullerene C60 ([(14) C(U)]C60 ) in female rats and mice for up to 30 days after intravenous exposure. | Sumner SC, Snyder RW, Wingard C, Mortensen NP, Holland NA, Shannahan JH, Dhungana S, Pathmasiri W, Han L, Lewin AH, Fennell TR | Journal of applied toxicology : JAT | 25727383 | J Appl Toxicol | 2015 Dec |
| Impact of a western diet on the ovarian and serum metabolome. | Dhungana S, Carlson JE, Pathmasiri W, McRitchie S, Davis M, Sumner S, Appt SE | Maturitas | 27621251 | Maturitas | 2016 Oct |
| The impact of early-life sub-therapeutic antibiotic treatment (STAT) on excessive weight is robust despite transfer of intestinal microbes. | Schulfer AF, Schluter J, Zhang Y, Brown Q, Pathmasiri W, McRitchie S, Sumner S, Li H, Xavier JB, Blaser MJ | The ISME journal | 30651608 | ISME J | 2019 May |
| Metabolomics in the assessment of chemical-induced reproductive and developmental outcomes using non-invasive biological fluids: application to the study of butylbenzyl phthalate. | Sumner S, Snyder R, Burgess J, Myers C, Tyl R, Sloan C, Fennell T | Journal of applied toxicology : JAT | 19731247 | J Appl Toxicol | 2009 Nov |
| Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET). | Sumner LW, Styczynski M, McLean J, Fiehn O, Jander G, Liao J, Sumner S, Britz-McKibbin P, Welti R, Jones AD, Dorrestein PC, Bearden D, Kaddurah-Daouk R | Metabolomics : Official journal of the Metabolomic Society | 28018159 | Metabolomics | 2015 Feb |
| Blood type biochemistry and human disease. | Ewald DR, Sumner SC | Wiley interdisciplinary reviews. Systems biology and medicine | 27599872 | Wiley Interdiscip Rev Syst Biol Med | 2016 Nov |
| Serum Metabolomic Profiles in Neonatal Mice following Oral Brominated Flame Retardant Exposures to Hexabromocyclododecane (HBCD) Alpha, Gamma, and Commercial Mixture. | Szabo DT, Pathmasiri W, Sumner S, Birnbaum LS | Environmental health perspectives | 27814246 | Environ Health Perspect | 2017 Apr |
| Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue. | Sun X, Stewart DA, Sandhu R, Kirk EL, Pathmasiri WW, McRitchie SL, Clark RF, Troester MA, Sumner SJ | PloS one | 29668675 | PLoS One | 2018 |
| Metabolomics Reveals New Mechanisms for Pathogenesis in Barth Syndrome and Introduces Novel Roles for Cardiolipin in Cellular Function. | Sandlers Y, Mercier K, Pathmasiri W, Carlson J, McRitchie S, Sumner S, Vernon HJ | PloS one | 27015085 | PLoS One | 2016 |
| The Importance of the Biological Impact of Exposure to the Concept of the Exposome. | Dennis KK, Auerbach SS, Balshaw DM, Cui Y, Fallin MD, Smith MT, Spira A, Sumner S, Miller GW | Environmental health perspectives | 27258438 | Environ Health Perspect | 2016 Oct |
| Plasma metabolomics analysis in sickle cell disease patients with albuminuria - an exploratory study. | Elsherif L, Pathmasiri W, McRitchie S, Archer DR, Ataga KI | British journal of haematology | 30198565 | Br J Haematol | 2019 May |
| A Metabolomics Approach to Investigate Kukoamine B-A Potent Natural Product With Anti-diabetic Properties. | Li YY, Stewart DA, Ye XM, Yin LH, Pathmasiri WW, McRitchie SL, Fennell TR, Cheung HY, Sumner SJ | Frontiers in pharmacology | 30723413 | Front Pharmacol | 2018 |
| Broad spectrum metabolomics for detection of abnormal metabolic pathways in a mouse model for retinitis pigmentosa. | Weiss ER, Osawa S, Xiong Y, Dhungana S, Carlson J, McRitchie S, Fennell TR | Experimental eye research | 30885711 | Exp Eye Res | 2019 Jul |
| The need for reflective consideration of an integrative understanding of cardiovascular consequences to PVP formulated C60 exposure. | Wingard CJ, Holland NA, Thompson LC, Brown JM, Lewin AH, Sumner SJ, Fennell TR, Vidanapathirana AK | Toxicological sciences : an official journal of the Society of Toxicology | 25422842 | Toxicol Sci | 2014 Oct |
| Metabolomics reveal physiological changes in mayfly larvae (Neocloeon triangulifer) at ecological upper thermal limits. | Chou H, Pathmasiri W, Deese-Spruill J, Sumner S, Buchwalter DB | Journal of insect physiology | 28733240 | J Insect Physiol | 2017 Aug |
| Metabolites as biomarkers of adverse reactions following vaccination: A pilot study using nuclear magnetic resonance metabolomics. | McClenathan BM, Stewart DA, Spooner CE, Pathmasiri WW, Burgess JP, McRitchie SL, Choi YS, Sumner SC | Vaccine | 28169076 | Vaccine | 2017 Mar 1 |
| Associations of maternal plasma and umbilical cord plasma metabolomics profiles with birth anthropometric measures. | Yeum D, Gilbert-Diamond D, Doherty B, Coker M, Stewart D, Kirchner D, McRitchie S, Sumner S, Karagas MR, Hoen AG | Pediatric research | 36627359 | Pediatr Res | 2023 Jul |
| C₆₀ exposure augments cardiac ischemia/reperfusion injury and coronary artery contraction in Sprague Dawley rats. | Thompson LC, Urankar RN, Holland NA, Vidanapathirana AK, Pitzer JE, Han L, Sumner SJ, Lewin AH, Fennell TR, Lust RM, Brown JM, Wingard CJ | Toxicological sciences : an official journal of the Society of Toxicology | 24431213 | Toxicol Sci | 2014 Apr |
| Preterm neonatal urinary renal developmental and acute kidney injury metabolomic profiling: an exploratory study. | Mercier K, McRitchie S, Pathmasiri W, Novokhatny A, Koralkar R, Askenazi D, Brophy PD, Sumner S | Pediatric nephrology (Berlin, Germany) | 27435284 | Pediatr Nephrol | 2017 Jan |
| Maternal Early Pregnancy Serum Metabolomics Profile and Abnormal Vaginal Bleeding as Predictors of Placental Abruption: A Prospective Study. | Gelaye B, Sumner SJ, McRitchie S, Carlson JE, Ananth CV, Enquobahrie DA, Qiu C, Sorensen TK, Williams MA | PloS one | 27300725 | PLoS One | 2016 |
| Effect of endotoxin and alum adjuvant vaccine on peanut allergy. | Johnson-Weaver BT, McRitchie S, Mercier KA, Pathmasiri W, Sumner SJ, Chan C, Germolec D, Kulis M, Burks AW, Staats HF | The Journal of allergy and clinical immunology | 28927819 | J Allergy Clin Immunol | 2018 Feb |
| Human microbiota, blood group antigens, and disease. | Ewald DR, Sumner SCJ | Wiley interdisciplinary reviews. Systems biology and medicine | 29316320 | Wiley Interdiscip Rev Syst Biol Med | 2018 May |
| Untargeted Metabolomics: Biochemical Perturbations in Golestan Cohort Study Opium Users Inform Intervention Strategies. | Li YY, Ghanbari R, Pathmasiri W, McRitchie S, Poustchi H, Shayanrad A, Roshandel G, Etemadi A, Pollock JD, Malekzadeh R, Sumner SCJ | Frontiers in nutrition | 33415121 | Front Nutr | 2020 |
| Metabolomics reveals biomarkers of opioid use disorder. | Ghanbari R, Li Y, Pathmasiri W, McRitchie S, Etemadi A, Pollock JD, Poustchi H, Rahimi-Movaghar A, Amin-Esmaeili M, Roshandel G, Shayanrad A, Abaei B, Malekzadeh R, Sumner SCJ | Translational psychiatry | 33542199 | Transl Psychiatry | 2021 Feb 4 |
| Serum trace metal association with response to erythropoiesis stimulating agents in incident and prevalent hemodialysis patients. | Brier ME, Gooding JR, Harrington JM, Burgess JP, McRitchie SL, Zhang X, Rovin BH, Klein JB, Himmelfarb J, Sumner SJ, Merchant ML | Scientific reports | 33214633 | Sci Rep | 2020 Nov 19 |
| Metabolic profiling of a chronic kidney disease cohort reveals metabolic phenotype more likely to benefit from a probiotic. | Saggi SJ, Mercier K, Gooding JR, Friedman E, Vyas U, Ranganathan N, Ranganathan P, McRitchie S, Sumner S | International journal of probiotics & prebiotics | 30774576 | Int J Probiotics Prebiotics | 2017 |
| LC-MS-based metabolomics analysis to identify meprin-β-associated changes in kidney tissue from mice with STZ-induced type 1 diabetes and diabetic kidney injury. | Gooding J, Cao L, Ahmed F, Mwiza JM, Fernander M, Whitaker C, Acuff Z, McRitchie S, Sumner S, Ongeri EM | American journal of physiology. Renal physiology | 31411076 | Am J Physiol Renal Physiol | 2019 Oct 1 |
| Patterns of infant fecal metabolite concentrations and social behavioral development in toddlers. | Laue HE, Bauer JA, Pathmasiri W, Sumner SCJ, McRitchie S, Palys TJ, Hoen AG, Madan JC, Karagas MR | Pediatric research | 38509226 | Pediatr Res | 2024 Jul |
| Predicting and Defining Steroid Resistance in Pediatric Nephrotic Syndrome Using Plasma Metabolomics. | Gooding JR, Agrawal S, McRitchie S, Acuff Z, Merchant ML, Klein JB, Smoyer WE, Sumner SJ, Midwest Pediatric Nephrology Consortium | Kidney international reports | 31922063 | Kidney Int Rep | 2020 Jan |
| Prospective association of the infant gut microbiome with social behaviors in the ECHO consortium. | Laue HE, Bonham KS, Coker MO, Moroishi Y, Pathmasiri W, McRitchie S, Sumner S, Hoen AG, Karagas MR, Klepac-Ceraj V, Madan JC, program collaborators for Environmental influences on Child Health Outcomes | Molecular autism | 38760865 | Mol Autism | 2024 May 17 |
| Distribution and biomarker of carbon-14 labeled fullerene C60 ([(14) C(U)]C60 ) in pregnant and lactating rats and their offspring after maternal intravenous exposure. | Snyder RW, Fennell TR, Wingard CJ, Mortensen NP, Holland NA, Shannahan JH, Pathmasiri W, Lewin AH, Sumner SC | Journal of applied toxicology : JAT | 26081520 | J Appl Toxicol | 2015 Dec |
| PVP formulated fullerene (C60) increases Rho-kinase dependent vascular tissue contractility in pregnant Sprague Dawley rats. | Vidanapathirana AK, Thompson LC, Mann EE, Odom JT, Holland NA, Sumner SJ, Han L, Lewin AH, Fennell TR, Brown JM, Wingard CJ | Reproductive toxicology (Elmsford, N.Y.) | 25088243 | Reprod Toxicol | 2014 Nov |
| Commensal microbiota is hepatoprotective and prevents liver fibrosis in mice. | Mazagova M, Wang L, Anfora AT, Wissmueller M, Lesley SA, Miyamoto Y, Eckmann L, Dhungana S, Pathmasiri W, Sumner S, Westwater C, Brenner DA, Schnabl B | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 25466902 | FASEB J | 2015 Mar |
| A systems biology approach utilizing a mouse diversity panel identifies genetic differences influencing isoniazid-induced microvesicular steatosis. | Church RJ, Wu H, Mosedale M, Sumner SJ, Pathmasiri W, Kurtz CL, Pletcher MT, Eaddy JS, Pandher K, Singer M, Batheja A, Watkins PB, Adkins K, Harrill AH | Toxicological sciences : an official journal of the Society of Toxicology | 24848797 | Toxicol Sci | 2014 Aug 1 |
| Potential serum biomarkers from a metabolomics study of autism. | Wang H, Liang S, Wang M, Gao J, Sun C, Wang J, Xia W, Wu S, Sumner SJ, Zhang F, Sun C, Wu L | Journal of psychiatry & neuroscience : JPN | 26395811 | J Psychiatry Neurosci | 2016 Jan |
| The role of gut microbial community and metabolomic shifts in adaptive resistance of Atlantic killifish (Fundulus heteroclitus) to polycyclic aromatic hydrocarbons. | Redfern LK, Jayasundara N, Singleton DR, Di Giulio RT, Carlson J, Sumner SJ, Gunsch CK | The Science of the total environment | 33647645 | Sci Total Environ | 2021 Jul 1 |
| Untargeted analysis of first trimester serum to reveal biomarkers of pregnancy complications: a case-control discovery phase study. | Harville EW, Li YY, Pan K, McRitchie S, Pathmasiri W, Sumner S | Scientific reports | 33568690 | Sci Rep | 2021 Feb 10 |
| Microfluidics meets metabolomics to reveal the impact of Campylobacter jejuni infection on biochemical pathways. | Mortensen NP, Mercier KA, McRitchie S, Cavallo TB, Pathmasiri W, Stewart D, Sumner SJ | Biomedical microdevices | 27231016 | Biomed Microdevices | 2016 Jun |
| Disposition of intravenously or orally administered silver nanoparticles in pregnant rats and the effect on the biochemical profile in urine. | Fennell TR, Mortensen NP, Black SR, Snyder RW, Levine KE, Poitras E, Harrington JM, Wingard CJ, Holland NA, Pathmasiri W, Sumner SC | Journal of applied toxicology : JAT | 27696470 | J Appl Toxicol | 2017 May |
| Stable Isotope-Resolved Metabolomic Differences between Hormone-Responsive and Triple-Negative Breast Cancer Cell Lines. | Winnike JH, Stewart DA, Pathmasiri WW, McRitchie SL, Sumner SJ | International journal of breast cancer | 30363973 | Int J Breast Cancer | 2018 |
| Pulmonary instillation of multi-walled carbon nanotubes promotes coronary vasoconstriction and exacerbates injury in isolated hearts. | Thompson LC, Frasier CR, Sloan RC, Mann EE, Harrison BS, Brown JM, Brown DA, Wingard CJ | Nanotoxicology | 23102262 | Nanotoxicology | 2014 Feb |
| Validation of a Metallomics Analysis of Placenta Tissue by Inductively-Coupled Plasma Mass Spectrometry. | Harrington JM, Young DJ, Fry RC, Weber FX, Sumner SS, Levine KE | Biological trace element research | 26155965 | Biol Trace Elem Res | 2016 Feb |
| Association of urinary metabolites with radiographic progression of knee osteoarthritis in overweight and obese adults: an exploratory study. | Loeser RF, Pathmasiri W, Sumner SJ, McRitchie S, Beavers D, Saxena P, Nicklas BJ, Jordan J, Guermazi A, Hunter DJ, Messier SP | Osteoarthritis and cartilage | 27012755 | Osteoarthritis Cartilage | 2016 Aug |
| The Effects of Glaucoma Drainage Devices on Oxygen Tension, Glycolytic Metabolites, and Metabolomics Profile of Aqueous Humor in the Rabbit. | Williamson BK, Hawkey NM, Blake DA, Frenkel JW, McDaniel KP, Davis JK, Satija C, Beazer A, Dhungana S, Carlson J, McRitchie S, Ayyala RS | Translational vision science & technology | 29423340 | Transl Vis Sci Technol | 2018 Feb |
| Association of Cesarean Delivery and Formula Supplementation with the Stool Metabolome of 6-Week-Old Infants. | Hoen AG, Coker MO, Madan JC, Pathmasiri W, McRitchie S, Dade EF, Doherty BT, Sumner S, Karagas MR | Metabolites | 34677417 | Metabolites | 2021 Oct 13 |
| Alterations in Microbial-Associated Fecal Metabolites in Relation to Arsenic Exposure Among Infants. | Karagas MR, McRitchie S, Hoen AG, Takigawa C, Jackson B, Baker ER, Madan J, Sumner SJ, Pathmasiri W | Exposure and health | 36776720 | Expo Health | 2022 Dec |
| Mass spectral fragmentation of trimethylsilylated small molecules. | Lai Z, Fiehn O | Mass spectrometry reviews | 27580014 | Mass Spectrom Rev | 2018 May |
| Confounding factors in identification of disease-resilient individuals. | Rosenblatt DS, Watkins D, Rajabi F, Levy HL | Nature biotechnology | 27824855 | Nat Biotechnol | 2016 Nov 8 |
| Catalytic Activities of Tumor-Specific Human Cytochrome P450 CYP2W1 Toward Endogenous Substrates. | Zhao Y, Wan D, Yang J, Hammock BD, Ortiz de Montellano PR | Drug metabolism and disposition: the biological fate of chemicals | 26936974 | Drug Metab Dispos | 2016 May |
| Contemporary views on the genetics of anorexia nervosa. | Shih PA, Woodside DB | European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology | 26944296 | Eur Neuropsychopharmacol | 2016 Apr |
| Inhibition of soluble epoxide hydrolase attenuates hepatic fibrosis and endoplasmic reticulum stress induced by carbon tetrachloride in mice. | Harris TR, Bettaieb A, Kodani S, Dong H, Myers R, Chiamvimonvat N, Haj FG, Hammock BD | Toxicology and applied pharmacology | 25827057 | Toxicol Appl Pharmacol | 2015 Jul 15 |
| Immune checkpoint blockade therapy for bladder cancer treatment. | Kim J | Investigative and clinical urology | 27326412 | Investig Clin Urol | 2016 Jun |
| Association between plasma endocannabinoids and appetite in hemodialysis patients: A pilot study. | Friedman AN, Kim J, Kaiser S, Pedersen TL, Newman JW, Watkins BA | Nutrition research (New York, N.Y.) | 27333956 | Nutr Res | 2016 Jul |
| Metabolomics insights into pathophysiological mechanisms of interstitial cystitis. | Fiehn O, Kim J | International neurourology journal | 25279237 | Int Neurourol J | 2014 Sep |
| Cardioprotection by controlling hyperamylinemia in a "humanized" diabetic rat model. | Despa S, Sharma S, Harris TR, Dong H, Li N, Chiamvimonvat N, Taegtmeyer H, Margulies KB, Hammock BD, Despa F | Journal of the American Heart Association | 25146704 | J Am Heart Assoc | 2014 Aug 21 |
| Frataxin deficiency increases cyclooxygenase 2 and prostaglandins in cell and animal models of Friedreich's ataxia. | Hayashi G, Shen Y, Pedersen TL, Newman JW, Pook M, Cortopassi G | Human molecular genetics | 25104852 | Hum Mol Genet | 2014 Dec 20 |
| Tracing flavonoid degradation in grapes by MS filtering with stable isotopes. | Chassy AW, Bueschl C, Lee H, Lerno L, Oberholster A, Barile D, Schuhmacher R, Waterhouse AL | Food chemistry | 25053079 | Food Chem | 2015 Jan 1 |
| Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma. | Lee DY, Kind T, Yoon YR, Fiehn O, Liu KH | Analytical and bioanalytical chemistry | 25171832 | Anal Bioanal Chem | 2014 Nov |
| Rapid-throughput glycomics applied to human milk oligosaccharide profiling for large human studies. | Totten SM, Wu LD, Parker EA, Davis JC, Hua S, Stroble C, Ruhaak LR, Smilowitz JT, German JB, Lebrilla CB | Analytical and bioanalytical chemistry | 25358913 | Anal Bioanal Chem | 2014 Dec |
| Top-down analysis of highly post-translationally modified peptides by Fourier transform ion cyclotron resonance mass spectrometry. | Guerrero A, Lerno L, Barile D, Lebrilla CB | Journal of the American Society for Mass Spectrometry | 25404158 | J Am Soc Mass Spectrom | 2015 Mar |
| Lipoxin generation is related to soluble epoxide hydrolase activity in severe asthma. | Ono E, Dutile S, Kazani S, Wechsler ME, Yang J, Hammock BD, Douda DN, Tabet Y, Khaddaj-Mallat R, Sirois M, Sirois C, Rizcallah E, Rousseau E, Martin R, Sutherland ER, Castro M, Jarjour NN, Israel E, Levy BD, National Heart, Lung, and Blood Institute's Asthma Clinical Research Network | American journal of respiratory and critical care medicine | 25162465 | Am J Respir Crit Care Med | 2014 Oct 15 |
| Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry. | Cajka T, Fiehn O | Trends in analytical chemistry : TRAC | 25309011 | Trends Analyt Chem | 2014 Oct 1 |
| Acute and chronic plasma metabolomic and liver transcriptomic stress effects in a mouse model with features of post-traumatic stress disorder. | Gautam A, D'Arpa P, Donohue DE, Muhie S, Chakraborty N, Luke BT, Grapov D, Carroll EE, Meyerhoff JL, Hammamieh R, Jett M | PloS one | 25629821 | PLoS One | 2015 |
| Metabolomics in psoriatic disease: pilot study reveals metabolite differences in psoriasis and psoriatic arthritis. | Armstrong AW, Wu J, Johnson MA, Grapov D, Azizi B, Dhillon J, Fiehn O | F1000Research | 25580230 | F1000Res | 2014 |
| Nutritional lipidomics: molecular metabolism, analytics, and diagnostics. | Smilowitz JT, Zivkovic AM, Wan YJ, Watkins SM, Nording ML, Hammock BD, German JB | Molecular nutrition & food research | 23818328 | Mol Nutr Food Res | 2013 Aug |
| Modulation of blood oxylipin levels by long-chain omega-3 fatty acid supplementation in hyper- and normolipidemic men. | Schuchardt JP, Schmidt S, Kressel G, Willenberg I, Hammock BD, Hahn A, Schebb NH | Prostaglandins, leukotrienes, and essential fatty acids | 24411718 | Prostaglandins Leukot Essent Fatty Acids | 2014 Feb-Mar |
| Temporal metabolomic responses of cultured HepG2 liver cells to high fructose and high glucose exposures. | Meissen JK, Hirahatake KM, Adams SH, Fiehn O | Metabolomics : Official journal of the Metabolomic Society | 26190955 | Metabolomics | 2015 Jun 1 |
| Differential responses of human dendritic cells to metabolites from the oral/airway microbiome. | Whiteson K, Agrawal S, Agrawal A | Clinical and experimental immunology | 28194750 | Clin Exp Immunol | 2017 Jun |
| Pharmacological inhibition of soluble epoxide hydrolase or genetic deletion reduces diclofenac-induced gastric ulcers. | Goswami SK, Rand AA, Wan D, Yang J, Inceoglu B, Thomas M, Morisseau C, Yang GY, Hammock BD | Life sciences | 28522175 | Life Sci | 2017 Jul 1 |
| Luteal Lipids Regulate Progesterone Production and May Modulate Immune Cell Function During the Estrous Cycle and Pregnancy. | Hughes CHK, Bosviel R, Newman JW, Pate JL | Frontiers in endocrinology | 31636603 | Front Endocrinol (Lausanne) | 2019 |
| Utilizing machine learning to discern hidden clinical values from big data in urology. | Kim WJ, Jin P, Kim WH, Kim J | Investigative and clinical urology | 32377598 | Investig Clin Urol | 2020 May |
| Aryl Hydrocarbon Receptor-Dependent inductions of omega-3 and omega-6 polyunsaturated fatty acid metabolism act inversely on tumor progression. | Huerta-Yepez S, Tirado-Rodriguez A, Montecillo-Aguado MR, Yang J, Hammock BD, Hankinson O | Scientific reports | 32398692 | Sci Rep | 2020 May 12 |
| Plasma Oxylipin Profile Discriminates Ethnicities in Subjects with Non-Alcoholic Steatohepatitis: An Exploratory Analysis. | Mazi TA, Borkowski K, Fiehn O, Bowlus CL, Sarkar S, Matsukuma K, Ali MR, Kieffer DA, Wan YY, Stanhope KL, Havel PJ, Newman JW, Medici V | Metabolites | 35208265 | Metabolites | 2022 Feb 19 |
| Prediction of the Immune Phenotypes of Bladder Cancer Patients for Precision Oncology. | Cho H, Tong F, You S, Jung S, Kim WH, Kim J | IEEE open journal of engineering in medicine and biology | 35519421 | IEEE Open J Eng Med Biol | 2022 |
| Ethnicity-specific alterations of plasma and hepatic lipidomic profiles are related to high NAFLD rate and severity in Hispanic Americans, a pilot study. | Mazi TA, Borkowski K, Newman JW, Fiehn O, Bowlus CL, Sarkar S, Matsukuma K, Ali MR, Kieffer DA, Wan YY, Stanhope KL, Havel PJ, Medici V | Free radical biology & medicine | 34182070 | Free Radic Biol Med | 2021 Aug 20 |
| Genetic deficiency or pharmacological inhibition of soluble epoxide hydrolase ameliorates high fat diet-induced pancreatic β-cell dysfunction and loss. | Koike S, Hsu MF, Bettaieb A, Chu B, Matsumoto N, Morisseau C, Havel PJ, Huising MO, Hammock BD, Haj FG | Free radical biology & medicine | 34038767 | Free Radic Biol Med | 2021 Aug 20 |
| Urobiome: An outlook on the metagenome of urological diseases. | Shoemaker R, Kim J | Investigative and clinical urology | 34729961 | Investig Clin Urol | 2021 Nov |
| Hexosamine biosynthetic pathway and O-GlcNAc-processing enzymes regulate daily rhythms in protein O-GlcNAcylation. | Liu X, Blaženović I, Contreras AJ, Pham TM, Tabuloc CA, Li YH, Ji J, Fiehn O, Chiu JC | Nature communications | 34234137 | Nat Commun | 2021 Jul 7 |
| Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators. | Flitter BA, Hvorecny KL, Ono E, Eddens T, Yang J, Kwak DH, Bahl CD, Hampton TH, Morisseau C, Hammock BD, Liu X, Lee JS, Kolls JK, Levy BD, Madden DR, Bomberger JM | Proceedings of the National Academy of Sciences of the United States of America | 27980032 | Proc Natl Acad Sci U S A | 2017 Jan 3 |
| Inhibition of soluble epoxide hydrolase as a novel approach to high dose diazepam induced hypotension. | Ulu A, Inceoglu B, Yang J, Singh V, Vito S, Wulff H, Hammock BD | Journal of clinical toxicology | 28255523 | J Clin Toxicol | 2016 Jun |
| Integration of metabolomics, transcriptomics, and microRNA expression profiling reveals a miR-143-HK2-glucose network underlying zinc-deficiency-associated esophageal neoplasia. | Fong LY, Jing R, Smalley KJ, Taccioli C, Fahrmann J, Barupal DK, Alder H, Farber JL, Fiehn O, Croce CM | Oncotarget | 29137232 | Oncotarget | 2017 Oct 10 |
| Validating Quantitative Untargeted Lipidomics Across Nine Liquid Chromatography-High-Resolution Mass Spectrometry Platforms. | Cajka T, Smilowitz JT, Fiehn O | Analytical chemistry | 29064229 | Anal Chem | 2017 Nov 21 |
| Generation and quality control of lipidomics data for the alzheimer's disease neuroimaging initiative cohort. | Barupal DK, Fan S, Wancewicz B, Cajka T, Sa M, Showalter MR, Baillie R, Tenenbaum JD, Louie G, Alzheimer’s Disease Neuroimaging Initiative, Alzheimer’s Disease Metabolomics Consortium, Kaddurah-Daouk R, Fiehn O | Scientific data | 30457571 | Sci Data | 2018 Nov 20 |
| Epidermal growth factor expression as a predictor of chemotherapeutic resistance in muscle-invasive bladder cancer. | Mansour AM, Abdelrahim M, Laymon M, Elsherbeeny M, Sultan M, Shokeir A, Mosbah A, Abol-Enein H, Awadalla A, Cho E, Sairam V, Park TD, Shahid M, Kim J | BMC urology | 30413194 | BMC Urol | 2018 Nov 9 |
| Sebaceous gland abnormalities in fatty acyl CoA reductase 2 (Far2) null mice result in primary cicatricial alopecia. | Sundberg JP, Shen T, Fiehn O, Rice RH, Silva KA, Kennedy VE, Gott NE, Dionne LA, Bechtold LS, Murray SA, Kuiper R, Pratt CH | PloS one | 30372477 | PLoS One | 2018 |
| Human-like hyperplastic prostate with low ZIP1 induced solely by Zn deficiency in rats. | Fong LY, Jing R, Smalley KJ, Wang ZX, Taccioli C, Fan S, Chen H, Alder H, Huebner K, Farber JL, Fiehn O, Croce CM | Proceedings of the National Academy of Sciences of the United States of America | 30397150 | Proc Natl Acad Sci U S A | 2018 Nov 20 |
| Effects of atopic dermatitis and gender on sebum lipid mediator and fatty acid profiles. | Agrawal K, Hassoun LA, Foolad N, Borkowski K, Pedersen TL, Sivamani RK, Newman JW | Prostaglandins, leukotrienes, and essential fatty acids | 29886894 | Prostaglandins Leukot Essent Fatty Acids | 2018 Jul |
| A role for long-chain acyl-CoA synthetase-4 (ACSL4) in diet-induced phospholipid remodeling and obesity-associated adipocyte dysfunction. | Killion EA, Reeves AR, El Azzouny MA, Yan QW, Surujon D, Griffin JD, Bowman TA, Wang C, Matthan NR, Klett EL, Kong D, Newman JW, Han X, Lee MJ, Coleman RA, Greenberg AS | Molecular metabolism | 29398618 | Mol Metab | 2018 Mar |
| Postprandial effect to decrease soluble epoxide hydrolase activity: roles of insulin and gut microbiota. | Yang J, Oh YT, Wan D, Watanabe RM, Hammock BD, Youn JH | The Journal of nutritional biochemistry | 28863368 | J Nutr Biochem | 2017 Nov |
| Personalized polyunsaturated fatty acids as a potential adjunctive treatment for anorexia nervosa. | Shih PB, Morisseau C, Le T, Woodside B, German JB | Prostaglandins & other lipid mediators | 28873340 | Prostaglandins Other Lipid Mediat | 2017 Nov |
| Eosinophilic and Noneosinophilic Asthma. | Carr TF, Zeki AA, Kraft M | American journal of respiratory and critical care medicine | 28910134 | Am J Respir Crit Care Med | 2018 Jan 1 |
| Cytochrome P450 monooxygenase lipid metabolites are significant second messengers in the resolution of choroidal neovascularization. | Hasegawa E, Inafuku S, Mulki L, Okunuki Y, Yanai R, Smith KE, Kim CB, Klokman G, Bielenberg DR, Puli N, Falck JR, Husain D, Miller JW, Edin ML, Zeldin DC, Lee KSS, Hammock BD, Schunck WH, Connor KM | Proceedings of the National Academy of Sciences of the United States of America | 28827330 | Proc Natl Acad Sci U S A | 2017 Sep 5 |
| Mitochondrial Pyruvate Import Promotes Long-Term Survival of Antibody-Secreting Plasma Cells. | Lam WY, Becker AM, Kennerly KM, Wong R, Curtis JD, Llufrio EM, McCommis KS, Fahrmann J, Pizzato HA, Nunley RM, Lee J, Wolfgang MJ, Patti GJ, Finck BN, Pearce EL, Bhattacharya D | Immunity | 27396958 | Immunity | 2016 Jul 19 |
| Zinc treatment reverses and anti-Zn-regulated miRs suppress esophageal carcinomas in vivo. | Fong LY, Huebner K, Jing R, Smalley KJ, Brydges CR, Fiehn O, Farber JL, Croce CM | Proceedings of the National Academy of Sciences of the United States of America | 37155893 | Proc Natl Acad Sci U S A | 2023 May 16 |
| Effectiveness of a Tailored Colorectal Cancer Educational Seminar in Enhancing the Awareness, Knowledge, and Behavior of Korean Americans Living in the Los Angeles Koreatown Area. | Kim S, Yeon A, Cho E, Shahid M, Kim J | Diversity and equality in health and care | 31019695 | Divers Equal Health Care | 2019 |
| Key Glycolytic Metabolites in Paralyzed Skeletal Muscle Are Altered Seven Days after Spinal Cord Injury in Mice. | Graham ZA, Siedlik JA, Harlow L, Sahbani K, Bauman WA, Tawfeek HA, Cardozo CP | Journal of neurotrauma | 30869558 | J Neurotrauma | 2019 Sep 15 |
| Gene deficiency and pharmacological inhibition of soluble epoxide hydrolase confers resilience to repeated social defeat stress. | Ren Q, Ma M, Ishima T, Morisseau C, Yang J, Wagner KM, Zhang JC, Yang C, Yao W, Dong C, Han M, Hammock BD, Hashimoto K | Proceedings of the National Academy of Sciences of the United States of America | 26976569 | Proc Natl Acad Sci U S A | 2016 Mar 29 |
| LC-MS-Based Lipidomics and Automated Identification of Lipids Using the LipidBlast In-Silico MS/MS Library. | Cajka T, Fiehn O | Methods in molecular biology (Clifton, N.J.) | 28660581 | Methods Mol Biol | 2017 |
| Effects of inflammation and soluble epoxide hydrolase inhibition on oxylipin composition of very low-density lipoproteins in isolated perfused rat livers. | Walker RE, Savinova OV, Pedersen TL, Newman JW, Shearer GC | Physiological reports | 33625776 | Physiol Rep | 2021 Feb |
| Soluble Epoxide Hydrolase Hepatic Deficiency Ameliorates Alcohol-Associated Liver Disease. | Mello A, Hsu MF, Koike S, Chu B, Cheng J, Yang J, Morisseau C, Torok NJ, Hammock BD, Haj FG | Cellular and molecular gastroenterology and hepatology | 33068774 | Cell Mol Gastroenterol Hepatol | 2021 |
| Investigation of metabolomic blood biomarkers for detection of adenocarcinoma lung cancer. | Fahrmann JF, Kim K, DeFelice BC, Taylor SL, Gandara DR, Yoneda KY, Cooke DT, Fiehn O, Kelly K, Miyamoto S | Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology | 26282632 | Cancer Epidemiol Biomarkers Prev | 2015 Nov |
| Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue. | Ruhaak LR, Taylor SL, Stroble C, Nguyen UT, Parker EA, Song T, Lebrilla CB, Rom WN, Pass H, Kim K, Kelly K, Miyamoto S | Journal of proteome research | 26322380 | J Proteome Res | 2015 Nov 6 |
| Vitamin D in Tear Fluid. | Lu X, Elizondo RA, Nielsen R, Christensen EI, Yang J, Hammock BD, Watsky MA | Investigative ophthalmology & visual science | 26348637 | Invest Ophthalmol Vis Sci | 2015 Sep |
| Metabolomics and transcriptomics identify pathway differences between visceral and subcutaneous adipose tissue in colorectal cancer patients: the ColoCare study. | Liesenfeld DB, Grapov D, Fahrmann JF, Salou M, Scherer D, Toth R, Habermann N, Böhm J, Schrotz-King P, Gigic B, Schneider M, Ulrich A, Herpel E, Schirmacher P, Fiehn O, Lampe JW, Ulrich CM | The American journal of clinical nutrition | 26156741 | Am J Clin Nutr | 2015 Aug |
| Genomic and experimental evidence for multiple metabolic functions in the RidA/YjgF/YER057c/UK114 (Rid) protein family. | Niehaus TD, Gerdes S, Hodge-Hanson K, Zhukov A, Cooper AJ, ElBadawi-Sidhu M, Fiehn O, Downs DM, Hanson AD | BMC genomics | 25975565 | BMC Genomics | 2015 May 15 |
| Habitual physical activity and plasma metabolomic patterns distinguish individuals with low vs. high weight loss during controlled energy restriction. | Piccolo BD, Keim NL, Fiehn O, Adams SH, Van Loan MD, Newman JW | The Journal of nutrition | 25833772 | J Nutr | 2015 Apr |
| Draft Genome Sequences of Salmonella Lysozyme Gene Knockout Mutants. | Arabyan N, Huang BC, Weimer BC | Genome announcements | 28596411 | Genome Announc | 2017 Jun 8 |
| Active-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase. | Hvorecny KL, Bahl CD, Kitamura S, Lee KSS, Hammock BD, Morisseau C, Madden DR | Structure (London, England : 1993) | 28392259 | Structure | 2017 May 2 |
| Multiplatform Mass Spectrometry-Based Approach Identifies Extracellular Glycolipids of the Yeast Rhodotorula babjevae UCDFST 04-877. | Cajka T, Garay LA, Sitepu IR, Boundy-Mills KL, Fiehn O | Journal of natural products | 27669091 | J Nat Prod | 2016 Oct 28 |
| Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets. | Barupal DK, Fiehn O | Scientific reports | 29109515 | Sci Rep | 2017 Nov 6 |
| Fat burning capacity in a mixed macronutrient meal protocol does not reflect metabolic flexibility in women who are overweight or obese. | Ahern MM, Artegoitia VM, Bosviel R, Newman JW, Keim NL, Krishnan S | medRxiv : the preprint server for health sciences | 39252930 | medRxiv | 2024 Aug 30 |
| Combined Effects of Gestational Phthalate Exposure and Zinc Deficiency on Steroid Metabolism and Growth. | Nuttall JR, Kucera HR, Supasai S, Gaikwad NW, Oteiza PI | Toxicological sciences : an official journal of the Society of Toxicology | 28115639 | Toxicol Sci | 2017 Apr 1 |
| Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival. | Fahrmann JF, Grapov D, Phinney BS, Stroble C, DeFelice BC, Rom W, Gandara DR, Zhang Y, Fiehn O, Pass H, Miyamoto S | Clinical proteomics | 27799870 | Clin Proteomics | 2016 |
| Anti-Ulcer Efficacy of Soluble Epoxide Hydrolase Inhibitor TPPU on Diclofenac-Induced Intestinal Ulcers. | Goswami SK, Wan D, Yang J, Trindade da Silva CA, Morisseau C, Kodani SD, Yang GY, Inceoglu B, Hammock BD | The Journal of pharmacology and experimental therapeutics | 26989141 | J Pharmacol Exp Ther | 2016 Jun |
| Mass Spectral Feature List Optimizer (MS-FLO): A Tool To Minimize False Positive Peak Reports in Untargeted Liquid Chromatography-Mass Spectroscopy (LC-MS) Data Processing. | DeFelice BC, Mehta SS, Samra S, Čajka T, Wancewicz B, Fahrmann JF, Fiehn O | Analytical chemistry | 28225594 | Anal Chem | 2017 Mar 21 |
| Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis. | Kind T, Cho E, Park TD, Deng N, Liu Z, Lee T, Fiehn O, Kim J | Scientific reports | 27976711 | Sci Rep | 2016 Dec 15 |
| Altered soluble epoxide hydrolase-derived oxylipins in patients with seasonal major depression: An exploratory study. | Hennebelle M, Otoki Y, Yang J, Hammock BD, Levitt AJ, Taha AY, Swardfager W | Psychiatry research | 28259037 | Psychiatry Res | 2017 Jun |
| Early PQQ supplementation has persistent long-term protective effects on developmental programming of hepatic lipotoxicity and inflammation in obese mice. | Jonscher KR, Stewart MS, Alfonso-Garcia A, DeFelice BC, Wang XX, Luo Y, Levi M, Heerwagen MJ, Janssen RC, de la Houssaye BA, Wiitala E, Florey G, Jonscher RL, Potma EO, Fiehn O, Friedman JE | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 28007783 | FASEB J | 2017 Apr |
| A Genetic Response Score for Hydrochlorothiazide Use: Insights From Genomics and Metabolomics Integration. | Shahin MH, Gong Y, McDonough CW, Rotroff DM, Beitelshees AL, Garrett TJ, Gums JG, Motsinger-Reif A, Chapman AB, Turner ST, Boerwinkle E, Frye RF, Fiehn O, Cooper-DeHoff RM, Kaddurah-Daouk R, Johnson JA | Hypertension (Dallas, Tex. : 1979) | 27381900 | Hypertension | 2016 Sep |
| Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. | Arabyan N, Park D, Foutouhi S, Weis AM, Huang BC, Williams CC, Desai P, Shah J, Jeannotte R, Kong N, Lebrilla CB, Weimer BC | Scientific reports | 27389966 | Sci Rep | 2016 Jul 8 |
| Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software. | Tsugawa H, Kind T, Nakabayashi R, Yukihira D, Tanaka W, Cajka T, Saito K, Fiehn O, Arita M | Analytical chemistry | 27419259 | Anal Chem | 2016 Aug 16 |
| Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. | Nagy-Szakal D, Barupal DK, Lee B, Che X, Williams BL, Kahn EJR, Ukaigwe JE, Bateman L, Klimas NG, Komaroff AL, Levine S, Montoya JG, Peterson DL, Levin B, Hornig M, Fiehn O, Lipkin WI | Scientific reports | 29968805 | Sci Rep | 2018 Jul 3 |
| The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis. | Wandro S, Osborne S, Enriquez C, Bixby C, Arrieta A, Whiteson K | mSphere | 29875143 | mSphere | 2018 Jun 27 |
| Implication of Sialidases in Salmonella Infection: Genome Release of Sialidase Knockout Strains from Salmonella enterica Serovar Typhimurium LT2. | Arabyan N, Weis AM, Huang BC, Weimer BC | Genome announcements | 28495784 | Genome Announc | 2017 May 11 |
| Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients. | Wandro S, Carmody L, Gallagher T, LiPuma JJ, Whiteson K | mSystems | 29202048 | mSystems | 2017 Nov-Dec |
| Oleocanthal-rich extra virgin olive oil demonstrates acute anti-platelet effects in healthy men in a randomized trial. | Agrawal K, Melliou E, Li X, Pedersen TL, Wang SC, Magiatis P, Newman JW, Holt RR | Journal of functional foods | 29904393 | J Funct Foods | 2017 Sep |
| Oral ibuprofen differentially affects plasma and sweat lipid mediator profiles in healthy adult males. | Agrawal K, Bosviel R, Piccolo BD, Newman JW | Prostaglandins & other lipid mediators | 29778785 | Prostaglandins Other Lipid Mediat | 2018 Jul |
| Innovations in asthma therapy: is there a role for inhaled statins? | Zeki AA, Elbadawi-Sidhu M | Expert review of respiratory medicine | 29575963 | Expert Rev Respir Med | 2018 Jun |
| An omega-3 epoxide of docosahexaenoic acid lowers blood pressure in angiotensin-II-dependent hypertension. | Ulu A, Stephen Lee KS, Miyabe C, Yang J, Hammock BG, Dong H, Hammock BD | Journal of cardiovascular pharmacology | 24691274 | J Cardiovasc Pharmacol | 2014 Jul |
| Protection from hypertension in mice by the Mediterranean diet is mediated by nitro fatty acid inhibition of soluble epoxide hydrolase. | Charles RL, Rudyk O, Prysyazhna O, Kamynina A, Yang J, Morisseau C, Hammock BD, Freeman BA, Eaton P | Proceedings of the National Academy of Sciences of the United States of America | 24843165 | Proc Natl Acad Sci U S A | 2014 Jun 3 |
| MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. | Tsugawa H, Cajka T, Kind T, Ma Y, Higgins B, Ikeda K, Kanazawa M, VanderGheynst J, Fiehn O, Arita M | Nature methods | 25938372 | Nat Methods | 2015 Jun |
| Diabetes Associated Metabolomic Perturbations in NOD Mice. | Grapov D, Fahrmann J, Hwang J, Poudel A, Jo J, Periwal V, Fiehn O, Hara M | Metabolomics : Official journal of the Metabolomic Society | 25755629 | Metabolomics | 2015 Apr |
| Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma. | Wikoff WR, Grapov D, Fahrmann JF, DeFelice B, Rom WN, Pass HI, Kim K, Nguyen U, Taylor SL, Gandara DR, Kelly K, Fiehn O, Miyamoto S | Cancer prevention research (Philadelphia, Pa.) | 25657018 | Cancer Prev Res (Phila) | 2015 May |
| Epoxide hydrolase activities and epoxy fatty acids in the mosquito Culex quinquefasciatus. | Xu J, Morisseau C, Yang J, Mamatha DM, Hammock BD | Insect biochemistry and molecular biology | 25686802 | Insect Biochem Mol Biol | 2015 Apr |
| MS2Analyzer: A software for small molecule substructure annotations from accurate tandem mass spectra. | Ma Y, Kind T, Yang D, Leon C, Fiehn O | Analytical chemistry | 25263576 | Anal Chem | 2014 Nov 4 |
| LC-MS metabolomics of psoriasis patients reveals disease severity-dependent increases in circulating amino acids that are ameliorated by anti-TNFα treatment. | Kamleh MA, Snowden SG, Grapov D, Blackburn GJ, Watson DG, Xu N, Ståhle M, Wheelock CE | Journal of proteome research | 25361234 | J Proteome Res | 2015 Jan 2 |
| Bifidobacterium longum subspecies infantis: champion colonizer of the infant gut. | Underwood MA, German JB, Lebrilla CB, Mills DA | Pediatric research | 25303277 | Pediatr Res | 2015 Jan |
| Glutamate enrichment as new diagnostic opportunity in breast cancer. | Budczies J, Pfitzner BM, Györffy B, Winzer KJ, Radke C, Dietel M, Fiehn O, Denkert C | International journal of cancer | 25155347 | Int J Cancer | 2015 Apr 1 |
| The human colostrum whey proteome is altered in gestational diabetes mellitus. | Grapov D, Lemay DG, Weber D, Phinney BS, Azulay Chertok IR, Gho DS, German JB, Smilowitz JT | Journal of proteome research | 25338220 | J Proteome Res | 2015 Jan 2 |
| Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics. | Vaniya A, Fiehn O | Trends in analytical chemistry : TRAC | 26213431 | Trends Analyt Chem | 2015 Jun 1 |
| Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism. | Edlund A, Yang Y, Yooseph S, Hall AP, Nguyen DD, Dorrestein PC, Nelson KE, He X, Lux R, Shi W, McLean JS | The ISME journal | 26023872 | ISME J | 2015 Dec |
| Soluble epoxide hydrolase deficiency inhibits dextran sulfate sodium-induced colitis and carcinogenesis in mice. | Zhang W, Li H, Dong H, Liao J, Hammock BD, Yang GY | Anticancer research | 24324059 | Anticancer Res | 2013 Dec |
| Dietary long-chain omega-3 fatty acids do not diminish eosinophilic pulmonary inflammation in mice. | Schuster GU, Bratt JM, Jiang X, Pedersen TL, Grapov D, Adkins Y, Kelley DS, Newman JW, Kenyon NJ, Stephensen CB | American journal of respiratory cell and molecular biology | 24134486 | Am J Respir Cell Mol Biol | 2014 Mar |
| LipidBlast in silico tandem mass spectrometry database for lipid identification. | Kind T, Liu KH, Lee DY, DeFelice B, Meissen JK, Fiehn O | Nature methods | 23817071 | Nat Methods | 2013 Aug |
| Microbial metabolomics in open microscale platforms. | Barkal LJ, Theberge AB, Guo CJ, Spraker J, Rappert L, Berthier J, Brakke KA, Wang CCC, Beebe DJ, Keller NP, Berthier E | Nature communications | 26842393 | Nat Commun | 2016 Feb 4 |
| Toward Merging Untargeted and Targeted Methods in Mass Spectrometry-Based Metabolomics and Lipidomics. | Cajka T, Fiehn O | Analytical chemistry | 26637011 | Anal Chem | 2016 Jan 5 |
| A Randomized Placebo Controlled Trial of Ibuprofen for Respiratory Syncytial Virus Infection in a Bovine Model. | Walsh P, Behrens N, Carvallo Chaigneau FR, McEligot H, Agrawal K, Newman JW, Anderson M, Gershwin LJ | PloS one | 27073858 | PLoS One | 2016 |
| Molecular Mechanisms and New Treatment Paradigm for Atrial Fibrillation. | Sirish P, Li N, Timofeyev V, Zhang XD, Wang L, Yang J, Lee KS, Bettaieb A, Ma SM, Lee JH, Su D, Lau VC, Myers RE, Lieu DK, López JE, Young JN, Yamoah EN, Haj F, Ripplinger CM, Hammock BD, Chiamvimonvat N | Circulation. Arrhythmia and electrophysiology | 27162031 | Circ Arrhythm Electrophysiol | 2016 May |
| Effect of fish oil on monoepoxides derived from fatty acids during cardiac surgery. | Akintoye E, Wu JH, Hou T, Song X, Yang J, Hammock B, Mozaffarian D | Journal of lipid research | 26749073 | J Lipid Res | 2016 Mar |
| Urinary metabolomics (GC-MS) reveals that low and high birth weight infants share elevated inositol concentrations at birth. | Barberini L, Noto A, Fattuoni C, Grapov D, Casanova A, Fenu G, Gaviano M, Carboni R, Ottonello G, Crisafulli M, Fanos V, Dessì A | The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians | 25284173 | J Matern Fetal Neonatal Med | 2014 Oct |
| The urinary metabolomics profile of an Italian autistic children population and their unaffected siblings. | Noto A, Fanos V, Barberini L, Grapov D, Fattuoni C, Zaffanello M, Casanova A, Fenu G, De Giacomo A, De Angelis M, Moretti C, Papoff P, Ditonno R, Francavilla R | The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians | 25284177 | J Matern Fetal Neonatal Med | 2014 Oct |
| Assess the expression of ubiquitin specific protease USP2a for bladder cancer diagnosis. | Jeong P, Ha YS, Yun SJ, Yoon HY, Freeman MR, Kim J, Kim WJ | BMC urology | 26250800 | BMC Urol | 2015 Aug 7 |
| Infant Maturity at Birth Reveals Minor Differences in the Maternal Milk Metabolome in the First Month of Lactation. | Spevacek AR, Smilowitz JT, Chin EL, Underwood MA, German JB, Slupsky CM | The Journal of nutrition | 26041675 | J Nutr | 2015 Aug |
| Exercise plasma metabolomics and xenometabolomics in obese, sedentary, insulin-resistant women: impact of a fitness and weight loss intervention. | Grapov D, Fiehn O, Campbell C, Chandler CJ, Burnett DJ, Souza EC, Casazza GA, Keim NL, Newman JW, Hunter GR, Fernandez JR, Garvey WT, Hoppel CL, Harper ME, Adams SH | American journal of physiology. Endocrinology and metabolism | 31526287 | Am J Physiol Endocrinol Metab | 2019 Dec 1 |
| Walnuts change lipoprotein composition suppressing TNFα-stimulated cytokine production by diabetic adipocyte. | Borkowski K, Yim SJ, Holt RR, Hackman RM, Keen CL, Newman JW, Shearer GC | The Journal of nutritional biochemistry | 31030167 | J Nutr Biochem | 2019 Jun |
| Effects of Gut Bacteria Depletion and High-Na(+) and Low-K(+) Intake on Circulating Levels of Biogenic Amines. | Blaženović I, Oh YT, Li F, Ji J, Nguyen AK, Wancewicz B, Bender JM, Fiehn O, Youn JH | Molecular nutrition & food research | 30513547 | Mol Nutr Food Res | 2019 Feb |
| Skeletal muscle interstitial fluid metabolomics at rest and associated with an exercise bout: application in rats and humans. | Zhang J, Bhattacharyya S, Hickner RC, Light AR, Lambert CJ, Gale BK, Fiehn O, Adams SH | American journal of physiology. Endocrinology and metabolism | 30398905 | Am J Physiol Endocrinol Metab | 2019 Jan 1 |
| Noninvasive profiling of sweat-derived lipid mediators for cutaneous research. | Agrawal K, Sivamani RK, Newman JW | Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) | 30030941 | Skin Res Technol | 2019 Jan |
| Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH. | Gallagher T, Phan J, Oliver A, Chase AB, England WE, Wandro S, Hendrickson C, Riedel SF, Whiteson K | Journal of bacteriology | 30642989 | J Bacteriol | 2019 Apr 1 |
| Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice. | Deol P, Fahrmann J, Yang J, Evans JR, Rizo A, Grapov D, Salemi M, Wanichthanarak K, Fiehn O, Phinney B, Hammock BD, Sladek FM | Scientific reports | 28970503 | Sci Rep | 2017 Oct 2 |
| Quantitative Proteomic Analysis Reveals Caffeine-Perturbed Proteomic Profiles in Normal Bladder Epithelial Cells. | Shahid M, Kim M, Yeon A, Andres AM, You S, Kim J | Proteomics | 30232827 | Proteomics | 2018 Oct |
| Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism. | Blank HM, Papoulas O, Maitra N, Garge R, Kennedy BK, Schilling B, Marcotte EM, Polymenis M | Molecular biology of the cell | 32129706 | Mol Biol Cell | 2020 May 1 |
| Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa. | Phan J, Gallagher T, Oliver A, England WE, Whiteson K | FEMS microbiology letters | 29617986 | FEMS Microbiol Lett | 2018 May 1 |
| Rewiring of cisplatin-resistant bladder cancer cells through epigenetic regulation of genes involved in amino acid metabolism. | Yeon A, You S, Kim M, Gupta A, Park MH, Weisenberger DJ, Liang G, Kim J | Theranostics | 30214636 | Theranostics | 2018 |
| Oxylipins in triglyceride-rich lipoproteins of dyslipidemic subjects promote endothelial inflammation following a high fat meal. | Rajamani A, Borkowski K, Akre S, Fernandez A, Newman JW, Simon SI, Passerini AG | Scientific reports | 31209255 | Sci Rep | 2019 Jun 17 |
| An in silico MS/MS library for automatic annotation of novel FAHFA lipids. | Ma Y, Kind T, Vaniya A, Gennity I, Fahrmann JF, Fiehn O | Journal of cheminformatics | 26579213 | J Cheminform | 2015 |
| Anti-inflammatory effects of ω-3 polyunsaturated fatty acids and soluble epoxide hydrolase inhibitors in angiotensin-II-dependent hypertension. | Ulu A, Harris TR, Morisseau C, Miyabe C, Inoue H, Schuster G, Dong H, Iosif AM, Liu JY, Weiss RH, Chiamvimonvat N, Imig JD, Hammock BD | Journal of cardiovascular pharmacology | 23676336 | J Cardiovasc Pharmacol | 2013 Sep |
| Comparison of free serum oxylipin concentrations in hyper- vs. normolipidemic men. | Schuchardt JP, Schmidt S, Kressel G, Dong H, Willenberg I, Hammock BD, Hahn A, Schebb NH | Prostaglandins, leukotrienes, and essential fatty acids | 23694766 | Prostaglandins Leukot Essent Fatty Acids | 2013 Jul |
| Applications of Multiple Reaction Monitoring to Clinical Glycomics. | Ruhaak LR, Lebrilla CB | Chromatographia | 25892741 | Chromatographia | 2015 Mar 1 |
| Oxylipin responses to fasting and insulin infusion in a large mammalian model of fasting-induced insulin resistance, the northern elephant seal. | Wright DN, Katundu KGH, Viscarra JA, Crocker DE, Newman JW, La Frano MR, Ortiz RM | American journal of physiology. Regulatory, integrative and comparative physiology | 34346724 | Am J Physiol Regul Integr Comp Physiol | 2021 Oct 1 |
| Alendronate-induced Perturbation of the Bone Proteome and Microenvironmental Pathophysiology. | Kim J, Yeon A, Parker SJ, Shahid M, Thiombane A, Cho E, You S, Emam H, Kim DG, Kim M | International journal of medical sciences | 34400895 | Int J Med Sci | 2021 |
| Lipid remodeling in response to methionine stress in MDA-MBA-468 triple-negative breast cancer cells. | Borrego SL, Fahrmann J, Hou J, Lin DW, Tromberg BJ, Fiehn O, Kaiser P | Journal of lipid research | 33647277 | J Lipid Res | 2021 |
| Omega-6 Polyunsaturated Fatty Acids Enhance Tumor Aggressiveness in Experimental Lung Cancer Model: Important Role of Oxylipins. | Montecillo-Aguado M, Tirado-Rodriguez B, Antonio-Andres G, Morales-Martinez M, Tong Z, Yang J, Hammock BD, Hernandez-Pando R, Huerta-Yepez S | International journal of molecular sciences | 35682855 | Int J Mol Sci | 2022 May 31 |
| Mid-gestation serum lipidomic profile associations with spontaneous preterm birth are influenced by body mass index. | Borkowski K, Newman JW, Aghaeepour N, Mayo JA, Blazenović I, Fiehn O, Stevenson DK, Shaw GM, Carmichael SL | PloS one | 33201881 | PLoS One | 2020 |
| Proteomic profiling of bladder cancer for precision medicine in the clinical setting: A review for the busy urologist. | Kim J, Jin P, Yang W, Kim WJ | Investigative and clinical urology | 33135400 | Investig Clin Urol | 2020 Nov |
| Stress-Induced Accumulation of HnRNP K into Stress Granules. | Kim J, Yeon A, Kim WK, Kim KH, Ohn T | Journal of cancer science and clinical therapeutics | 35340804 | J Cancer Sci Clin Ther | 2021 |
| Determinants of Meal-Induced Changes in Circulating FFA Epoxides, Diols, and Diol-to-Epoxide Ratios as Indices of Soluble Epoxide Hydrolase Activity. | Oh YT, Yang J, Stefanovski D, Hammock B, Youn JH | International journal of molecular sciences | 38139180 | Int J Mol Sci | 2023 Dec 11 |
| Diet high in linoleic acid dysregulates the intestinal endocannabinoid system and increases susceptibility to colitis in Mice. | Deol P, Ruegger P, Logan GD, Shawki A, Li J, Mitchell JD, Yu J, Piamthai V, Radi SH, Hasnain S, Borkowski K, Newman JW, McCole DF, Nair MG, Hsiao A, Borneman J, Sladek FM | Gut microbes | 37400966 | Gut Microbes | 2023 Jan-Dec |
| Niemann-pick type C2 deficiency in human fibroblasts confers robust and selective activation of prostaglandin E2 biosynthesis. | Frolov A, Dong H, Jiang M, Yang L, Cook EC, Matnani R, Hammock BD, Crofford LJ | The Journal of biological chemistry | 23814065 | J Biol Chem | 2013 Aug 16 |
| Tilapia (Oreochromis mossambicus) brain cells respond to hyperosmotic challenge by inducing myo-inositol biosynthesis. | Gardell AM, Yang J, Sacchi R, Fangue NA, Hammock BD, Kültz D | The Journal of experimental biology | 24072790 | J Exp Biol | 2013 Dec 15 |
| Treatment of mice with 2,3,7,8-Tetrachlorodibenzo-p-dioxin markedly increases the levels of a number of cytochrome P450 metabolites of omega-3 polyunsaturated fatty acids in the liver and lung. | Yang J, Solaimani P, Dong H, Hammock B, Hankinson O | The Journal of toxicological sciences | 24213002 | J Toxicol Sci | 2013 |
| Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus. | Smilowitz JT, Totten SM, Huang J, Grapov D, Durham HA, Lammi-Keefe CJ, Lebrilla C, German JB | The Journal of nutrition | 24047700 | J Nutr | 2013 Dec |
| Tracing phenolic metabolism in Vitis vinifera berries with 13C6-phenylalanine: implication of an unidentified intermediate reservoir. | Chassy AW, Adams DO, Waterhouse AL | Journal of agricultural and food chemistry | 24611798 | J Agric Food Chem | 2014 Mar 19 |
| Accumulation of high-value lipids in single-cell microorganisms: a mechanistic approach and future perspectives. | Garay LA, Boundy-Mills KL, German JB | Journal of agricultural and food chemistry | 24628496 | J Agric Food Chem | 2014 Apr 2 |
| Identifying individual differences of fluoxetine response in juvenile rhesus monkeys by metabolite profiling. | He Y, Hogrefe CE, Grapov D, Palazoglu M, Fiehn O, Turck CW, Golub MS | Translational psychiatry | 25369145 | Transl Psychiatry | 2014 Nov 4 |
| Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. | Kol A, Foutouhi S, Walker NJ, Kong NT, Weimer BC, Borjesson DL | Stem cells and development | 24803072 | Stem Cells Dev | 2014 Aug 15 |
| Perinatal exposure of mice to the pesticide DDT impairs energy expenditure and metabolism in adult female offspring. | La Merrill M, Karey E, Moshier E, Lindtner C, La Frano MR, Newman JW, Buettner C | PloS one | 25076055 | PLoS One | 2014 |
| Improved metabolic health alters host metabolism in parallel with changes in systemic xeno-metabolites of gut origin. | Campbell C, Grapov D, Fiehn O, Chandler CJ, Burnett DJ, Souza EC, Casazza GA, Gustafson MB, Keim NL, Newman JW, Hunter GR, Fernandez JR, Garvey WT, Harper ME, Hoppel CL, Meissen JK, Take K, Adams SH | PloS one | 24416208 | PLoS One | 2014 |
| Increase of EPA-derived hydroxy, epoxy and dihydroxy fatty acid levels in human plasma after a single dose of long-chain omega-3 PUFA. | Schuchardt JP, Schneider I, Willenberg I, Yang J, Hammock BD, Hahn A, Schebb NH | Prostaglandins & other lipid mediators | 24667634 | Prostaglandins Other Lipid Mediat | 2014 Jun |
| Individual variation in lipidomic profiles of healthy subjects in response to omega-3 Fatty acids. | Nording ML, Yang J, Georgi K, Hegedus Karbowski C, German JB, Weiss RH, Hogg RJ, Trygg J, Hammock BD, Zivkovic AM | PloS one | 24204640 | PLoS One | 2013 |
| Anti-inflammatory properties of prostaglandin E2: deletion of microsomal prostaglandin E synthase-1 exacerbates non-immune inflammatory arthritis in mice. | Frolov A, Yang L, Dong H, Hammock BD, Crofford LJ | Prostaglandins, leukotrienes, and essential fatty acids | 24055573 | Prostaglandins Leukot Essent Fatty Acids | 2013 Oct |
| Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection. | Chen P, Reiter T, Huang B, Kong N, Weimer BC | Pathogens (Basel, Switzerland) | 29257110 | Pathogens | 2017 Dec 19 |
| Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy. | Blaženović I, Kind T, Torbašinović H, Obrenović S, Mehta SS, Tsugawa H, Wermuth T, Schauer N, Jahn M, Biedendieck R, Jahn D, Fiehn O | Journal of cheminformatics | 29086039 | J Cheminform | 2017 May 25 |
| Obesity-induced changes in lipid mediators persist after weight loss. | Hernandez-Carretero A, Weber N, La Frano MR, Ying W, Lantero Rodriguez J, Sears DD, Wallenius V, Börgeson E, Newman JW, Osborn O | International journal of obesity (2005) | 29089614 | Int J Obes (Lond) | 2018 Apr |
| Lipidomic Analysis of Oxidized Fatty Acids in Plant and Algae Oils. | Richardson CE, Hennebelle M, Otoki Y, Zamora D, Yang J, Hammock BD, Taha AY | Journal of agricultural and food chemistry | 28157307 | J Agric Food Chem | 2017 Mar 8 |
| Site-specific glycosylation of secretory immunoglobulin A from human colostrum. | Huang J, Guerrero A, Parker E, Strum JS, Smilowitz JT, German JB, Lebrilla CB | Journal of proteome research | 25629924 | J Proteome Res | 2015 Mar 6 |
| Metabolomics by Gas Chromatography-Mass Spectrometry: Combined Targeted and Untargeted Profiling. | Fiehn O | Current protocols in molecular biology | 27038389 | Curr Protoc Mol Biol | 2016 Apr 1 |
| Bioactive lipid profiling reveals drug target engagement of a soluble epoxide hydrolase inhibitor in a murine model of tobacco smoke exposure. | Nording ML, Yang J, Hoang L, Zamora V, Uyeminami D, Espiritu I, Pinkerton KE, Hammock BD, Luria A | Journal of metabolomics | 27076918 | J Metabolomics | 2015 Apr |
| Lipoxygenase Activity Accelerates Programmed Spore Germination in Aspergillus fumigatus. | Fischer GJ, Bacon W, Yang J, Palmer JM, Dagenais T, Hammock BD, Keller NP | Frontiers in microbiology | 28536571 | Front Microbiol | 2017 |
| LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries. | Kind T, Okazaki Y, Saito K, Fiehn O | Analytical chemistry | 25340521 | Anal Chem | 2014 Nov 18 |
| Different mechanisms of acute versus long-term antihypertensive effects of soluble epoxide hydrolase inhibition: studies in Cyp1a1-Ren-2 transgenic rats. | Sporková A, Jíchová S, Husková Z, Kopkan L, Nishiyama A, Hwang SH, Hammock BD, Imig JD, Kompanowska-Jezierska E, Sadowski J, Kramer HJ, Cervenka L | Clinical and experimental pharmacology & physiology | 25224811 | Clin Exp Pharmacol Physiol | 2014 Dec |
| Celecoxib Does Not Protect against Fibrosis and Inflammation in a Carbon Tetrachloride-Induced Model of Liver Injury. | Harris TR, Kodani S, Rand AA, Yang J, Imai DM, Hwang SH, Hammock BD | Molecular pharmacology | 29844231 | Mol Pharmacol | 2018 Aug |
| Celecoxib use and circulating oxylipins in a colon polyp prevention trial. | Martinez JA, Yang J, Wertheim BC, Roe DJ, Schriewer A, Lance P, Alberts DS, Hammock BD, Thompson PA | PloS one | 29698447 | PLoS One | 2018 |
| Changes in PTGS1 and ALOX12 Gene Expression in Peripheral Blood Mononuclear Cells Are Associated with Changes in Arachidonic Acid, Oxylipins, and Oxylipin/Fatty Acid Ratios in Response to Omega-3 Fatty Acid Supplementation. | Berthelot CC, Kamita SG, Sacchi R, Yang J, Nording ML, Georgi K, Hegedus Karbowski C, German JB, Weiss RH, Hogg RJ, Hammock BD, Zivkovic AM | PloS one | 26672987 | PLoS One | 2015 |
| Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS. | Ma Y, Tanaka N, Vaniya A, Kind T, Fiehn O | Journal of agricultural and food chemistry | 26698107 | J Agric Food Chem | 2016 Jan 20 |
| Inflammatory regulation of steroid sulfatase: A novel mechanism to control estrogen homeostasis and inflammation in chronic liver disease. | Jiang M, Klein M, Zanger UM, Mohammad MK, Cave MC, Gaikwad NW, Dias NJ, Selcer KW, Guo Y, He J, Zhang X, Shen Q, Qin W, Li J, Li S, Xie W | Journal of hepatology | 26220752 | J Hepatol | 2016 Jan |
| Inhibition of soluble epoxide hydrolase does not improve the course of congestive heart failure and the development of renal dysfunction in rats with volume overload induced by aorto-caval fistula. | Červenka L, Melenovský V, Husková Z, Sporková A, Bürgelová M, Škaroupková P, Hwang SH, Hammock BD, Imig JD, Sadowski J | Physiological research | 26047375 | Physiol Res | 2015 |
| Genomic, Proteomic, and Metabolomic Data Integration Strategies. | Wanichthanarak K, Fahrmann JF, Grapov D | Biomarker insights | 26396492 | Biomark Insights | 2015 |
| Metabolic profiling of cholesterol and sex steroid hormones to monitor urological diseases. | Moon JY, Choi MH, Kim J | Endocrine-related cancer | 27580660 | Endocr Relat Cancer | 2016 Oct |
| Integrated Metabolomics and Proteomics Highlight Altered Nicotinamide- and Polyamine Pathways in Lung Adenocarcinoma. | Fahrmann JF, Grapov DD, Wanichthanarak K, DeFelice BC, Salemi MR, Rom WN, Gandara DR, Phinney BS, Fiehn O, Pass H, Miyamoto S | Carcinogenesis | 28049629 | Carcinogenesis | 2017 Mar |
| Effect of a Soluble Epoxide Hydrolase Inhibitor, UC1728, on LPS-Induced Uveitis in the Rabbit. | McLellan GJ, Aktas Z, Hennes-Beean E, Kolb AW, Larsen IV, Schmitz EJ, Clausius HR, Yang J, Hwang SH, Morisseau C, Inceoglu B, Hammock BD, Brandt CR | Journal of ocular biology | 28066796 | J Ocul Biol | 2016 Jan |
| An ω-3-enriched diet alone does not attenuate CCl(4)-induced hepatic fibrosis. | Harris TR, Kodani S, Yang J, Imai DM, Hammock BD | The Journal of nutritional biochemistry | 27732914 | J Nutr Biochem | 2016 Dec |
| MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics. | Jeffryes JG, Colastani RL, Elbadawi-Sidhu M, Kind T, Niehaus TD, Broadbelt LJ, Hanson AD, Fiehn O, Tyo KE, Henry CS | Journal of cheminformatics | 26322134 | J Cheminform | 2015 |
| Perinatal triphenyl phosphate exposure accelerates type 2 diabetes onset and increases adipose accumulation in UCD-type 2 diabetes mellitus rats. | Green AJ, Graham JL, Gonzalez EA, La Frano MR, Petropoulou SE, Park JS, Newman JW, Stanhope KL, Havel PJ, La Merrill MA | Reproductive toxicology (Elmsford, N.Y.) | 27421578 | Reprod Toxicol | 2017 Mar |
| Circulating levels of endocannabinoids and oxylipins altered by dietary lipids in older women are likely associated with previously identified gene targets. | Watkins BA, Kim J, Kenny A, Pedersen TL, Pappan KL, Newman JW | Biochimica et biophysica acta | 27452639 | Biochim Biophys Acta | 2016 Nov |
| Bile acids promote diethylnitrosamine-induced hepatocellular carcinoma via increased inflammatory signaling. | Sun L, Beggs K, Borude P, Edwards G, Bhushan B, Walesky C, Roy N, Manley MW Jr, Gunewardena S, O'Neil M, Li H, Apte U | American journal of physiology. Gastrointestinal and liver physiology | 27151938 | Am J Physiol Gastrointest Liver Physiol | 2016 Jul 1 |
| Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia. | Fahrmann J, Grapov D, Yang J, Hammock B, Fiehn O, Bell GI, Hara M | American journal of physiology. Endocrinology and metabolism | 25852003 | Am J Physiol Endocrinol Metab | 2015 Jun 1 |
| Intake of farmed Atlantic salmon fed soybean oil increases hepatic levels of arachidonic acid-derived oxylipins and ceramides in mice. | Midtbø LK, Borkowska AG, Bernhard A, Rønnevik AK, Lock EJ, Fitzgerald ML, Torstensen BE, Liaset B, Brattelid T, Pedersen TL, Newman JW, Kristiansen K, Madsen L | The Journal of nutritional biochemistry | 25776459 | J Nutr Biochem | 2015 Jun |
| Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion. | Faber F, Tran L, Byndloss MX, Lopez CA, Velazquez EM, Kerrinnes T, Nuccio SP, Wangdi T, Fiehn O, Tsolis RM, Bäumler AJ | Nature | 27309805 | Nature | 2016 Jun 30 |
| Abnormal lipoprotein oxylipins in metabolic syndrome and partial correction by omega-3 fatty acids. | Shearer GC, Borkowski K, Puumala SL, Harris WS, Pedersen TL, Newman JW | Prostaglandins, leukotrienes, and essential fatty acids | 29413356 | Prostaglandins Leukot Essent Fatty Acids | 2018 Jan |
| Obesogenic diets alter metabolism in mice. | Showalter MR, Nonnecke EB, Linderholm AL, Cajka T, Sa MR, Lönnerdal B, Kenyon NJ, Fiehn O | PloS one | 29324762 | PLoS One | 2018 |
| Insulin induces a shift in lipid and primary carbon metabolites in a model of fasting-induced insulin resistance. | Olmstead KI, La Frano MR, Fahrmann J, Grapov D, Viscarra JA, Newman JW, Fiehn O, Crocker DE, Filipp FV, Ortiz RM | Metabolomics : Official journal of the Metabolomic Society | 28757815 | Metabolomics | 2017 May |
| An inhibitor of soluble epoxide hydrolase ameliorates diabetes-induced learning and memory impairment in rats. | Minaz N, Razdan R, Hammock BD, Goswami SK | Prostaglandins & other lipid mediators | 29751149 | Prostaglandins Other Lipid Mediat | 2018 May |
| Alpha-oxoglutarate inhibits the proliferation of immortalized normal bladder epithelial cells via an epigenetic switch involving ARID1A. | Shahid M, Gull N, Yeon A, Cho E, Bae J, Yoon HS, You S, Yoon H, Kim M, Berman BP, Kim J | Scientific reports | 29540744 | Sci Rep | 2018 Mar 14 |
| The serum metabolomics signature of type 2 diabetes is obscured in Alzheimer's disease. | Morris JK, Piccolo BD, Shankar K, Thyfault JP, Adams SH | American journal of physiology. Endocrinology and metabolism | 29351484 | Am J Physiol Endocrinol Metab | 2018 Jun 1 |
| Unique plasma metabolomic signatures of individuals with inherited disorders of long-chain fatty acid oxidation. | McCoin CS, Piccolo BD, Knotts TA, Matern D, Vockley J, Gillingham MB, Adams SH | Journal of inherited metabolic disease | 26907176 | J Inherit Metab Dis | 2016 May |
| Pharmacometabolomic signature links simvastatin therapy and insulin resistance. | Elbadawi-Sidhu M, Baillie RA, Zhu H, Chen YI, Goodarzi MO, Rotter JI, Krauss RM, Fiehn O, Kaddurah-Daouk R | Metabolomics : Official journal of the Metabolomic Society | 29732238 | Metabolomics | 2017 Jan |
| Exogenous GLP-1 stimulates TCA cycle and suppresses gluconeogenesis and ketogenesis in late-fasted northern elephant seals pups. | Dhillon J, Viscarra JA, Newman JW, Fiehn O, Crocker DE, Ortiz RM | American journal of physiology. Regulatory, integrative and comparative physiology | 33407018 | Am J Physiol Regul Integr Comp Physiol | 2021 Apr 1 |
| Gestational long-term hypoxia induces metabolomic reprogramming and phenotypic transformations in fetal sheep pulmonary arteries. | Leslie E, Lopez V, Anti NAO, Alvarez R, Kafeero I, Welsh DG, Romero M, Kaushal S, Johnson CM, Bosviel R, Blaženović I, Song R, Brito A, Frano MR, Zhang L, Newman JW, Fiehn O, Wilson SM | American journal of physiology. Lung cellular and molecular physiology | 33624555 | Am J Physiol Lung Cell Mol Physiol | 2021 May 1 |
| Equality, Inclusion, and Diversity in Healthcare During the COVID-19 Pandemic. | Kim J | International neurourology journal | 32615681 | Int Neurourol J | 2020 Jun |
| Teleurology and digital health app in COVID-19 pandemic. | Kim J, Gewertz B | Investigative and clinical urology | 32665988 | Investig Clin Urol | 2020 Jul |
| Quick overview of diagnostic kits and smartphone apps for urologists during the COVID-19 pandemic: a narrative review. | Park H, Jin P, Jung S, Kim J | Translational andrology and urology | 33718094 | Transl Androl Urol | 2021 Feb |
| Umbilical cord blood metabolomics reveal distinct signatures of dyslipidemia prior to bronchopulmonary dysplasia and pulmonary hypertension. | La Frano MR, Fahrmann JF, Grapov D, Pedersen TL, Newman JW, Fiehn O, Underwood MA, Mestan K, Steinhorn RH, Wedgwood S | American journal of physiology. Lung cellular and molecular physiology | 30113229 | Am J Physiol Lung Cell Mol Physiol | 2018 Nov 1 |
| Using MS-FINDER for identifying 19 natural products in the CASMI 2016 contest. | Vaniya A, Samra SN, Palazoglu M, Tsugawa H, Fiehn O | Phytochemistry letters | 31576201 | Phytochem Lett | 2017 Sep |
| α-Linolenic acid-enriched butter attenuated high fat diet-induced insulin resistance and inflammation by promoting bioconversion of n-3 PUFA and subsequent oxylipin formation. | Fan R, Kim J, You M, Giraud D, Toney AM, Shin SH, Kim SY, Borkowski K, Newman JW, Chung S | The Journal of nutritional biochemistry | 31760228 | J Nutr Biochem | 2020 Feb |
| Innovative technologies for the smart E-Healthcare system. | Kim WJ, Kim J | Investigative and clinical urology | 30637354 | Investig Clin Urol | 2019 Jan |
| Cyclooxygenase-derived proangiogenic metabolites of epoxyeicosatrienoic acids. | Rand AA, Barnych B, Morisseau C, Cajka T, Lee KSS, Panigrahy D, Hammock BD | Proceedings of the National Academy of Sciences of the United States of America | 28396419 | Proc Natl Acad Sci U S A | 2017 Apr 25 |
| Dose-related liver injury of Geniposide associated with the alteration in bile acid synthesis and transportation. | Tian J, Zhu J, Yi Y, Li C, Zhang Y, Zhao Y, Pan C, Xiang S, Li X, Li G, Newman JW, Feng X, Liu J, Han J, Wang L, Gao Y, La Frano MR, Liang A | Scientific reports | 28827769 | Sci Rep | 2017 Aug 21 |
| Impact of diabetes on male sexual function in streptozotocin-induced diabetic rats: Protective role of soluble epoxide hydrolase inhibitor. | Minaz N, Razdan R, Hammock BD, Mujwar S, Goswami SK | Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie | 31102913 | Biomed Pharmacother | 2019 Jul |
| MeCP2 isoform e1 mutant mice recapitulate motor and metabolic phenotypes of Rett syndrome. | Vogel Ciernia A, Yasui DH, Pride MC, Durbin-Johnson B, Noronha AB, Chang A, Knotts TA, Rutkowsky JR, Ramsey JJ, Crawley JN, LaSalle JM | Human molecular genetics | 30137367 | Hum Mol Genet | 2018 Dec 1 |
| Comparative analysis of obesity-related cardiometabolic and renal biomarkers in human plasma and serum. | Rajan MR, Sotak M, Barrenäs F, Shen T, Borkowski K, Ashton NJ, Biörserud C, Lindahl TL, Ramström S, Schöll M, Lindahl P, Fiehn O, Newman JW, Perkins R, Wallenius V, Lange S, Börgeson E | Scientific reports | 31659186 | Sci Rep | 2019 Oct 28 |
| Abrogation of esophageal carcinoma development in miR-31 knockout rats. | Fong LY, Taccioli C, Palamarchuk A, Tagliazucchi GM, Jing R, Smalley KJ, Fan S, Altemus J, Fiehn O, Huebner K, Farber JL, Croce CM | Proceedings of the National Academy of Sciences of the United States of America | 32123074 | Proc Natl Acad Sci U S A | 2020 Mar 17 |
| Multiassay nutritional metabolomics profiling of low vitamin A status versus adequacy is characterized by reduced plasma lipid mediators among lactating women in the Philippines: A pilot study. | Johnson CM, Rosario R, Brito A, Agrawal K, Fanter R, Lietz G, Haskell M, Engle-Stone R, Newman JW, La Frano MR | Nutrition research (New York, N.Y.) | 35732076 | Nutr Res | 2022 Aug |
| Lipoxins reduce obesity-induced adipose tissue inflammation in 3D-cultured human adipocytes and explant cultures. | Soták M, Rajan MR, Clark M, Harms M, Rani A, Kraft JD, Tandio D, Shen T, Borkowski K, Fiehn O, Newman JW, Quiding-Järbrink M, Biörserud C, Apelgren P, Staalesen T, Hagberg CE, Boucher J, Wallenius V, Lange S, Börgeson E | iScience | 35789845 | iScience | 2022 Jul 15 |
| Impact of a weight loss and fitness intervention on exercise-associated plasma oxylipin patterns in obese, insulin-resistant, sedentary women. | Grapov D, Fiehn O, Campbell C, Chandler CJ, Burnett DJ, Souza EC, Casazza GA, Keim NL, Hunter GR, Fernandez JR, Garvey WT, Hoppel CL, Harper ME, Newman JW, Adams SH | Physiological reports | 32869956 | Physiol Rep | 2020 Sep |
| Urinary metabolite profiling combined with computational analysis predicts interstitial cystitis-associated candidate biomarkers. | Wen H, Lee T, You S, Park SH, Song H, Eilber KS, Anger JT, Freeman MR, Park S, Kim J | Journal of proteome research | 25353990 | J Proteome Res | 2015 Jan 2 |
| Enhanced detection and identification in metabolomics by use of LC-MS/MS untargeted analysis in combination with gas-phase fractionation. | Calderón-Santiago M, Priego-Capote F, Luque de Castro MD | Analytical chemistry | 24992377 | Anal Chem | 2014 Aug 5 |
| Gene expression profiling in pachyonychia congenita skin. | Cao YA, Hickerson RP, Seegmiller BL, Grapov D, Gross MM, Bessette MR, Phinney BS, Flores MA, Speaker TJ, Vermeulen A, Bravo AA, Bruckner AL, Milstone LM, Schwartz ME, Rice RH, Kaspar RL | Journal of dermatological science | 25656049 | J Dermatol Sci | 2015 Mar |
| Dysregulation of soluble epoxide hydrolase and lipidomic profiles in anorexia nervosa. | Shih PB, Yang J, Morisseau C, German JB, Zeeland AA, Armando AM, Quehenberger O, Bergen AW, Magistretti P, Berrettini W, Halmi KA, Schork N, Hammock BD, Kaye W | Molecular psychiatry | 25824304 | Mol Psychiatry | 2016 Apr |
| MetaMapR: pathway independent metabolomic network analysis incorporating unknowns. | Grapov D, Wanichthanarak K, Fiehn O | Bioinformatics (Oxford, England) | 25847005 | Bioinformatics | 2015 Aug 15 |
| Cardiac steatosis potentiates angiotensin II effects in the heart. | Glenn DJ, Cardema MC, Ni W, Zhang Y, Yeghiazarians Y, Grapov D, Fiehn O, Gardner DG | American journal of physiology. Heart and circulatory physiology | 25485904 | Am J Physiol Heart Circ Physiol | 2015 Feb 15 |
| High-dose simvastatin exhibits enhanced lipid-lowering effects relative to simvastatin/ezetimibe combination therapy. | Snowden SG, Grapov D, Settergren M, D'Alexandri FL, Haeggström JZ, Fiehn O, Hyötyläinen T, Pedersen TL, Newman JW, Orešič M, Pernow J, Wheelock CE | Circulation. Cardiovascular genetics | 25516625 | Circ Cardiovasc Genet | 2014 Dec |
| Will the 40-gene expression classifier predict responders to EGFR targeted chemotherapy for the invasive bladder cancer patients? | Kim J, Kim WJ | Annals of translational medicine | 25738138 | Ann Transl Med | 2015 Feb |
| Preparation of 20-HETE using multifunctional enzyme type 2-negative Starmerella bombicola. | Van Bogaert I, Zhang G, Yang J, Liu JY, Ye Y, Soetaert W, Hammock BD | Journal of lipid research | 23966667 | J Lipid Res | 2013 Nov |
| The use of metabolomics in population-based research. | Su LJ, Fiehn O, Maruvada P, Moore SC, O'Keefe SJ, Wishart DS, Zanetti KA | Advances in nutrition (Bethesda, Md.) | 25398741 | Adv Nutr | 2014 Nov |
| Effects of soluble epoxide hydrolase deficiency on acute pancreatitis in mice. | Bettaieb A, Chahed S, Tabet G, Yang J, Morisseau C, Griffey S, Hammock BD, Haj FG | PloS one | 25402489 | PLoS One | 2014 |
| Soluble epoxide hydrolase inhibitor attenuates inflammation and airway hyperresponsiveness in mice. | Yang J, Bratt J, Franzi L, Liu JY, Zhang G, Zeki AA, Vogel CF, Williams K, Dong H, Lin Y, Hwang SH, Kenyon NJ, Hammock BD | American journal of respiratory cell and molecular biology | 24922186 | Am J Respir Cell Mol Biol | 2015 Jan |
| Comparison of the effects of long-chain omega-3 fatty acid supplementation on plasma levels of free and esterified oxylipins. | Schebb NH, Ostermann AI, Yang J, Hammock BD, Hahn A, Schuchardt JP | Prostaglandins & other lipid mediators | 24880049 | Prostaglandins Other Lipid Mediat | 2014 Oct |
| Oxylipin Profiling of Alzheimer's Disease in Nondiabetic and Type 2 Diabetic Elderly. | Morris JK, Piccolo BD, John CS, Green ZD, Thyfault JP, Adams SH | Metabolites | 31491971 | Metabolites | 2019 Sep 5 |
| Exercise May Affect Metabolism in Cancer-Related Cognitive Impairment. | Shahid M, Kim J | Metabolites | 32962184 | Metabolites | 2020 Sep 20 |
| Identification of small molecules using accurate mass MS/MS search. | Kind T, Tsugawa H, Cajka T, Ma Y, Lai Z, Mehta SS, Wohlgemuth G, Barupal DK, Showalter MR, Arita M, Fiehn O | Mass spectrometry reviews | 28436590 | Mass Spectrom Rev | 2018 Jul |
| Ingestion of the epoxide hydrolase inhibitor AUDA modulates immune responses of the mosquito, Culex quinquefasciatus during blood feeding. | Xu J, Morisseau C, Yang J, Lee KSS, Kamita SG, Hammock BD | Insect biochemistry and molecular biology | 27369469 | Insect Biochem Mol Biol | 2016 Sep |
| SPLASH, a hashed identifier for mass spectra. | Wohlgemuth G, Mehta SS, Mejia RF, Neumann S, Pedrosa D, Pluskal T, Schymanski EL, Willighagen EL, Wilson M, Wishart DS, Arita M, Dorrestein PC, Bandeira N, Wang M, Schulze T, Salek RM, Steinbeck C, Nainala VC, Mistrik R, Nishioka T, Fiehn O | Nature biotechnology | 27824832 | Nat Biotechnol | 2016 Nov 8 |
| Sweat lipid mediator profiling: a noninvasive approach for cutaneous research. | Agrawal K, Hassoun LA, Foolad N, Pedersen TL, Sivamani RK, Newman JW | Journal of lipid research | 27875258 | J Lipid Res | 2017 Jan |
| Are We Ready to Use the Omics Strategies for Precision Medicine? | Kim J | International neurourology journal | 27915470 | Int Neurourol J | 2016 Nov |
| Acylcarnitines as markers of exercise-associated fuel partitioning, xenometabolism, and potential signals to muscle afferent neurons. | Zhang J, Light AR, Hoppel CL, Campbell C, Chandler CJ, Burnett DJ, Souza EC, Casazza GA, Hughen RW, Keim NL, Newman JW, Hunter GR, Fernandez JR, Garvey WT, Harper ME, Fiehn O, Adams SH | Experimental physiology | 27730694 | Exp Physiol | 2017 Jan 1 |
| The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition. | Sperber H, Mathieu J, Wang Y, Ferreccio A, Hesson J, Xu Z, Fischer KA, Devi A, Detraux D, Gu H, Battle SL, Showalter M, Valensisi C, Bielas JH, Ericson NG, Margaretha L, Robitaille AM, Margineantu D, Fiehn O, Hockenbery D, Blau CA, Raftery D, Margolin AA, Hawkins RD, Moon RT, Ware CB, Ruohola-Baker H | Nature cell biology | 26571212 | Nat Cell Biol | 2015 Dec |
| Centromere protein F (CENPF), a microtubule binding protein, modulates cancer metabolism by regulating pyruvate kinase M2 phosphorylation signaling. | Shahid M, Lee MY, Piplani H, Andres AM, Zhou B, Yeon A, Kim M, Kim HL, Kim J | Cell cycle (Georgetown, Tex.) | 30526248 | Cell Cycle | 2018 |
| Exosomes Derived from Human Primed Mesenchymal Stem Cells Induce Mitosis and Potentiate Growth Factor Secretion. | Yuan O, Lin C, Wagner J, Archard JA, Deng P, Halmai J, Bauer G, Fink KD, Fury B, Perotti NH, Walker JE, Pollock K, Apperson M, Butters J, Belafsky P, Farwell DG, Kuhn M, Nolta J, Anderson JD | Stem cells and development | 30638129 | Stem Cells Dev | 2019 Mar 15 |
| Application of Low-Cost, Easy-to-Use, Portable Biosensor Systems for Diagnosing Bladder Dysfunctions. | Myung NV, Jung S, Kim J | International neurourology journal | 30943698 | Int Neurourol J | 2019 Mar |
| Pharmacometabolomic signature of ataxia SCA1 mouse model and lithium effects. | Perroud B, Jafar-Nejad P, Wikoff WR, Gatchel JR, Wang L, Barupal DK, Crespo-Barreto J, Fiehn O, Zoghbi HY, Kaddurah-Daouk R | PloS one | 23936457 | PLoS One | 2013 |
| Virus encoded circulatory miRNAs for early detection of prostate cancer. | Kim J, Yun SJ, Kim WJ | BMC urology | 26612689 | BMC Urol | 2015 Nov 26 |
| Plasma amino acid and metabolite signatures tracking diabetes progression in the UCD-T2DM rat model. | Piccolo BD, Graham JL, Stanhope KL, Fiehn O, Havel PJ, Adams SH | American journal of physiology. Endocrinology and metabolism | 27094034 | Am J Physiol Endocrinol Metab | 2016 Jun 1 |
| Dietary DHA reduces downstream endocannabinoid and inflammatory gene expression and epididymal fat mass while improving aspects of glucose use in muscle in C57BL/6J mice. | Kim J, Carlson ME, Kuchel GA, Newman JW, Watkins BA | International journal of obesity (2005) | 26219414 | Int J Obes (Lond) | 2016 Jan |
| The c-MET Network as Novel Prognostic Marker for Predicting Bladder Cancer Patients with an Increased Risk of Developing Aggressive Disease. | Kim YW, Yun SJ, Jeong P, Kim SK, Kim SY, Yan C, Seo SP, Lee SK, Kim J, Kim WJ | PloS one | 26225770 | PLoS One | 2015 |
| Diacetylspermine Is a Novel Prediagnostic Serum Biomarker for Non-Small-Cell Lung Cancer and Has Additive Performance With Pro-Surfactant Protein B. | Wikoff WR, Hanash S, DeFelice B, Miyamoto S, Barnett M, Zhao Y, Goodman G, Feng Z, Gandara D, Fiehn O, Taguchi A | Journal of clinical oncology : official journal of the American Society of Clinical Oncology | 26282655 | J Clin Oncol | 2015 Nov 20 |
| Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods. | Abate-Pella D, Freund DM, Ma Y, Simón-Manso Y, Hollender J, Broeckling CD, Huhman DV, Krokhin OV, Stoll DR, Hegeman AD, Kind T, Fiehn O, Schymanski EL, Prenni JE, Sumner LW, Boswell PG | Journal of chromatography. A | 26292625 | J Chromatogr A | 2015 Sep 18 |
| Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases. | Chen Z, Kim J | BMC urology | 27000794 | BMC Urol | 2016 Mar 22 |
| Metabolic changes associated with methionine stress sensitivity in MDA-MB-468 breast cancer cells. | Borrego SL, Fahrmann J, Datta R, Stringari C, Grapov D, Zeller M, Chen Y, Wang P, Baldi P, Gratton E, Fiehn O, Kaiser P | Cancer & metabolism | 27141305 | Cancer Metab | 2016 |
| Pharmacometabolomic Assessments of Atenolol and Hydrochlorothiazide Treatment Reveal Novel Drug Response Phenotypes. | Rotroff DM, Shahin MH, Gurley SB, Zhu H, Motsinger-Reif A, Meisner M, Beitelshees AL, Fiehn O, Johnson JA, Elbadawi-Sidhu M, Frye RF, Gong Y, Weng L, Cooper-DeHoff RM, Kaddurah-Daouk R | CPT: pharmacometrics & systems pharmacology | 26783503 | CPT Pharmacometrics Syst Pharmacol | 2015 Nov |
| Establishing and Performing Targeted Multi-residue Analysis for Lipid Mediators and Fatty Acids in Small Clinical Plasma Samples. | Pedersen TL, Newman JW | Methods in molecular biology (Clifton, N.J.) | 29363074 | Methods Mol Biol | 2018 |
| Integrated proteomic and phosphoproteomic analyses of cisplatin-sensitive and resistant bladder cancer cells reveal CDK2 network as a key therapeutic target. | Jung JH, You S, Oh JW, Yoon J, Yeon A, Shahid M, Cho E, Sairam V, Park TD, Kim KP, Kim J | Cancer letters | 30145203 | Cancer Lett | 2018 Nov 28 |
| Era of the Fourth Industrial Revolution and the Urologists' Journey to Navigating Big Omics Data. | Kim J | International neurourology journal | 30068072 | Int Neurourol J | 2018 Jul |
| Sex-associated differences in baseline urinary metabolites of healthy adults. | Fan S, Yeon A, Shahid M, Anger JT, Eilber KS, Fiehn O, Kim J | Scientific reports | 30089834 | Sci Rep | 2018 Aug 8 |
| Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics. | Lai Z, Tsugawa H, Wohlgemuth G, Mehta S, Mueller M, Zheng Y, Ogiwara A, Meissen J, Showalter M, Takeuchi K, Kind T, Beal P, Arita M, Fiehn O | Nature methods | 29176591 | Nat Methods | 2018 Jan |
| Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites. | Gao B, Gallagher T, Zhang Y, Elbadawi-Sidhu M, Lai Z, Fiehn O, Whiteson KL | mSphere | 29695623 | mSphere | 2018 Apr 25 |
| Male lifespan extension with 17-α estradiol is linked to a sex-specific metabolomic response modulated by gonadal hormones in mice. | Garratt M, Lagerborg KA, Tsai YM, Galecki A, Jain M, Miller RA | Aging cell | 29806096 | Aging Cell | 2018 Aug |
| Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. | Blaženović I, Kind T, Ji J, Fiehn O | Metabolites | 29748461 | Metabolites | 2018 May 10 |
| Prebiotic milk oligosaccharides prevent development of obese phenotype, impairment of gut permeability, and microbial dysbiosis in high fat-fed mice. | Hamilton MK, Ronveaux CC, Rust BM, Newman JW, Hawley M, Barile D, Mills DA, Raybould HE | American journal of physiology. Gastrointestinal and liver physiology | 28280143 | Am J Physiol Gastrointest Liver Physiol | 2017 May 1 |
| Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation. | Lai Z, Kind T, Fiehn O | Analytical chemistry | 28876899 | Anal Chem | 2017 Oct 3 |
| Synthesis of cyclooxygenase metabolites of 8,9-epoxyeicosatrienoic acid (EET): 11- and 15-hydroxy 8,9-EETs. | Barnych B, Rand AA, Cajka T, Lee KSS, Hammock BD | Organic & biomolecular chemistry | 28470279 | Org Biomol Chem | 2017 May 23 |
| Amylases and Their Importance during Glycan Degradation: Genome Sequence Release of Salmonella Amylase Knockout Strains. | Arabyan N, Huang BC, Weimer BC | Genome announcements | 28522713 | Genome Announc | 2017 May 18 |
| Epimetabolites: discovering metabolism beyond building and burning. | Showalter MR, Cajka T, Fiehn O | Current opinion in chemical biology | 28213207 | Curr Opin Chem Biol | 2017 Feb |
| Soluble Epoxide Hydrolase Inhibition and Epoxyeicosatrienoic Acid Treatment Improve Vascularization of Engineered Skin Substitutes. | Supp DM, Hahn JM, McFarland KL, Combs KA, Lee KS, Inceoglu B, Wan D, Boyce ST, Hammock BD | Plastic and reconstructive surgery. Global open | 28293507 | Plast Reconstr Surg Glob Open | 2016 Dec |
| Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase. | Mafu S, Karunanithi PS, Palazzo TA, Harrod BL, Rodriguez SM, Mollhoff IN, O'Brien TE, Tong S, Fiehn O, Tantillo DJ, Bohlmann J, Zerbe P | Proceedings of the National Academy of Sciences of the United States of America | 28096378 | Proc Natl Acad Sci U S A | 2017 Jan 31 |
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| Long-chain acyl coenzyme A synthetase 1 overexpression in primary cultured Schwann cells prevents long chain fatty acid-induced oxidative stress and mitochondrial dysfunction. | Hinder LM, Figueroa-Romero C, Pacut C, Hong Y, Vivekanandan-Giri A, Pennathur S, Feldman EL | Antioxidants & redox signaling | 23991914 | Antioxid Redox Signal | 2014 Aug 1 |
| Untargeted LC-MS metabolomics of bronchoalveolar lavage fluid differentiates acute respiratory distress syndrome from health. | Evans CR, Karnovsky A, Kovach MA, Standiford TJ, Burant CF, Stringer KA | Journal of proteome research | 24289193 | J Proteome Res | 2014 Feb 7 |
| Alteration of the murine gastrointestinal microbiota by tigecycline leads to increased susceptibility to Clostridium difficile infection. | Bassis CM, Theriot CM, Young VB | Antimicrobial agents and chemotherapy | 24590475 | Antimicrob Agents Chemother | 2014 May |
| Purinergic dysregulation in pulmonary hypertension. | Visovatti SH, Hyman MC, Goonewardena SN, Anyanwu AC, Kanthi Y, Robichaud P, Wang J, Petrovic-Djergovic D, Rattan R, Burant CF, Pinsky DJ | American journal of physiology. Heart and circulatory physiology | 27208163 | Am J Physiol Heart Circ Physiol | 2016 Jul 1 |
| Cysteine depletion induces pancreatic tumor ferroptosis in mice. | Badgley MA, Kremer DM, Maurer HC, DelGiorno KE, Lee HJ, Purohit V, Sagalovskiy IR, Ma A, Kapilian J, Firl CEM, Decker AR, Sastra SA, Palermo CF, Andrade LR, Sajjakulnukit P, Zhang L, Tolstyka ZP, Hirschhorn T, Lamb C, Liu T, Gu W, Seeley ES, Stone E, Georgiou G, Manor U, Iuga A, Wahl GM, Stockwell BR, Lyssiotis CA, Olive KP | Science (New York, N.Y.) | 32241947 | Science | 2020 Apr 3 |
| Early life stress exposure associated with reduced polyunsaturated-containing lipids in low-income children. | LaBarre JL, Miller AL, Bauer KW, Burant CF, Lumeng JC | Pediatric research | 32492693 | Pediatr Res | 2021 Apr |
| Moderate-Intensity Exercise and High-Intensity Interval Training Affect Insulin Sensitivity Similarly in Obese Adults. | Ryan BJ, Schleh MW, Ahn C, Ludzki AC, Gillen JB, Varshney P, Van Pelt DW, Pitchford LM, Chenevert TL, Gioscia-Ryan RA, Howton SM, Rode T, Hummel SL, Burant CF, Little JP, Horowitz JF | The Journal of clinical endocrinology and metabolism | 32492705 | J Clin Endocrinol Metab | 2020 Aug 1 |
| Mitochondrial Nutrient Utilization Underlying the Association Between Metabolites and Insulin Resistance in Adolescents. | LaBarre JL, Peterson KE, Kachman MT, Perng W, Tang L, Hao W, Zhou L, Karnovsky A, Cantoral A, Téllez-Rojo MM, Song PXK, Burant CF | The Journal of clinical endocrinology and metabolism | 32413135 | J Clin Endocrinol Metab | 2020 Jul 1 |
| Sirtuin 5 levels are limiting in preserving cardiac function and suppressing fibrosis in response to pressure overload. | Guo AH, Baliira R, Skinner ME, Kumar S, Andren A, Zhang L, Goldsmith RS, Michan S, Davis NJ, Maccani MW, Day SM, Sinclair DA, Brody MJ, Lyssiotis CA, Stein AB, Lombard DB | Scientific reports | 35851833 | Sci Rep | 2022 Jul 18 |
| Cardiolipin-induced activation of pyruvate dehydrogenase links mitochondrial lipid biosynthesis to TCA cycle function. | Li Y, Lou W, Raja V, Denis S, Yu W, Schmidtke MW, Reynolds CA, Schlame M, Houtkooper RH, Greenberg ML | The Journal of biological chemistry | 31186346 | J Biol Chem | 2019 Jul 26 |
| Hydrogen sulfide perturbs mitochondrial bioenergetics and triggers metabolic reprogramming in colon cells. | Libiad M, Vitvitsky V, Bostelaar T, Bak DW, Lee HJ, Sakamoto N, Fearon E, Lyssiotis CA, Weerapana E, Banerjee R | The Journal of biological chemistry | 31213529 | J Biol Chem | 2019 Aug 9 |
| Human Norovirus Triggers Primary B Cell Immune Activation In Vitro. | Mirabelli C, Jones MK, Young VL, Kolawole AO, Owusu I, Shan M, Abuaita B, Turula H, Trevino JG, Grigorova I, Lundy SK, Lyssiotis CA, Ward VK, Karst SM, Wobus CE | mBio | 35404121 | mBio | 2022 Apr 26 |
| Advantages of Studying the Metabolome in Response to Mixed-Macronutrient Challenges and Suggestions for Future Research Designs. | LaBarre JL, Singer K, Burant CF | The Journal of nutrition | 34255076 | J Nutr | 2021 Oct 1 |
| The molecular and metabolic program by which white adipocytes adapt to cool physiologic temperatures. | Mori H, Dugan CE, Nishii A, Benchamana A, Li Z, Cadenhead TS 4th, Das AK, Evans CR, Overmyer KA, Romanelli SM, Peterson SK, Bagchi DP, Corsa CA, Hardij J, Learman BS, El Azzouny M, Coon JJ, Inoki K, MacDougald OA | PLoS biology | 33979328 | PLoS Biol | 2021 May |
| 1,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathway. | Vences-Guzmán MÁ, Paula Goetting-Minesky M, Guan Z, Castillo-Ramirez S, Córdoba-Castro LA, López-Lara IM, Geiger O, Sohlenkamp C, Christopher Fenno J | Molecular microbiology | 28009086 | Mol Microbiol | 2017 Mar |
| Head and Neck Squamous Cell Carcinoma Metabolism Draws on Glutaminolysis, and Stemness Is Specifically Regulated by Glutaminolysis via Aldehyde Dehydrogenase. | Kamarajan P, Rajendiran TM, Kinchen J, Bermúdez M, Danciu T, Kapila YL | Journal of proteome research | 28168879 | J Proteome Res | 2017 Mar 3 |
| Impaired β-Oxidation and Altered Complex Lipid Fatty Acid Partitioning with Advancing CKD. | Afshinnia F, Rajendiran TM, Soni T, Byun J, Wernisch S, Sas KM, Hawkins J, Bellovich K, Gipson D, Michailidis G, Pennathur S, Michigan Kidney Translational Core CPROBE Investigator Group | Journal of the American Society of Nephrology : JASN | 29021384 | J Am Soc Nephrol | 2018 Jan |
| Gut Microbial Product Predicts Cardiovascular Risk in Chronic Kidney Disease Patients. | Jadoon A, Mathew AV, Byun J, Gadegbeku CA, Gipson DS, Afshinnia F, Pennathur S, for the Michigan Kidney Translational Core CPROBE Investigator Group | American journal of nephrology | 30326477 | Am J Nephrol | 2018 |
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| Metabolomic Determinants of Metabolic Risk in Mexican Adolescents. | Perng W, Hector EC, Song PXK, Tellez Rojo MM, Raskind S, Kachman M, Cantoral A, Burant CF, Peterson KE | Obesity (Silver Spring, Md.) | 28758362 | Obesity (Silver Spring) | 2017 Sep |
| Local cryotherapy minimally impacts the metabolome and transcriptome of human skeletal muscle. | Sarver DC, Sugg KB, Disser NP, Enselman ERS, Awan TM, Mendias CL | Scientific reports | 28546635 | Sci Rep | 2017 May 25 |
| Distinct Lipidomic Landscapes Associated with Clinical Stages of Urothelial Cancer of the Bladder. | Piyarathna DWB, Rajendiran TM, Putluri V, Vantaku V, Soni T, von Rundstedt FC, Donepudi SR, Jin F, Maity S, Ambati CR, Dong J, Gödde D, Roth S, Störkel S, Degener S, Michailidis G, Lerner SP, Pennathur S, Lotan Y, Coarfa C, Sreekumar A, Putluri N | European urology focus | 28753886 | Eur Urol Focus | 2018 Dec |
| Clinical Efficacy of ONC201 in H3K27M-Mutant Diffuse Midline Gliomas Is Driven by Disruption of Integrated Metabolic and Epigenetic Pathways. | Venneti S, Kawakibi AR, Ji S, Waszak SM, Sweha SR, Mota M, Pun M, Deogharkar A, Chung C, Tarapore RS, Ramage S, Chi A, Wen PY, Arrillaga-Romany I, Batchelor TT, Butowski NA, Sumrall A, Shonka N, Harrison RA, de Groot J, Mehta M, Hall MD, Daghistani D, Cloughesy TF, Ellingson BM, Beccaria K, Varlet P, Kim MM, Umemura Y, Garton H, Franson A, Schwartz J, Jain R, Kachman M, Baum H, Burant CF, Mottl SL, Cartaxo RT, John V, Messinger D, Qin T, Peterson E, Sajjakulnukit P, Ravi K, Waugh A, Walling D, Ding Y, Xia Z, Schwendeman A, Hawes D, Yang F, Judkins AR, Wahl D, Lyssiotis CA, de la Nava D, Alonso MM, Eze A, Spitzer J, Schmidt SV, Duchatel RJ, Dun MD, Cain JE, Jiang L, Stopka SA, Baquer G, Regan MS, Filbin MG, Agar NYR, Zhao L, Kumar-Sinha C, Mody R, Chinnaiyan A, Kurokawa R, Pratt D, Yadav VN, Grill J, Kline C, Mueller S, Resnick A, Nazarian J, Allen JE, Odia Y, Gardner SL, Koschmann C | Cancer discovery | 37584601 | Cancer Discov | 2023 Nov 1 |
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| Human metapneumovirus infection of airway epithelial cells is associated with changes in core metabolic pathways. | Zhao Y, Chahar HS, Komaravelli N, Dossumbekova A, Casola A | Virology | 30927711 | Virology | 2019 May |
| Tissue of origin dictates GOT1 dependence and confers synthetic lethality to radiotherapy. | Nelson BS, Lin L, Kremer DM, Sousa CM, Cotta-Ramusino C, Myers A, Ramos J, Gao T, Kovalenko I, Wilder-Romans K, Dresser J, Davis M, Lee HJ, Nwosu ZC, Campit S, Mashadova O, Nicolay BN, Tolstyka ZP, Halbrook CJ, Chandrasekaran S, Asara JM, Crawford HC, Cantley LC, Kimmelman AC, Wahl DR, Lyssiotis CA | Cancer & metabolism | 31908776 | Cancer Metab | 2020 |
| Comparing Self-Reported Dietary Intake to Provided Diet during a Randomized Controlled Feeding Intervention: A Pilot Study. | Casey JL, Meijer JL, IglayReger HB, Ball SC, Han-Markey TL, Braun TM, Burant CF, Peterson KE | Dietetics (Basel, Switzerland) | 38107624 | Dietetics (Basel) | 2023 Dec |
| Complete elimination of estrogen receptor α by PROTAC estrogen receptor α degrader ERD-148 in breast cancer cells. | Hu B, Hu J | Breast cancer research and treatment | 37847455 | Breast Cancer Res Treat | 2024 Jan |
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| The Role of Elevated Branched-Chain Amino Acids in the Effects of Vertical Sleeve Gastrectomy to Reduce Weight and Improve Glucose Regulation. | Bozadjieva Kramer N, Evers SS, Shin JH, Silverwood S, Wang Y, Burant CF, Sandoval DA, Seeley RJ | Cell reports | 33053352 | Cell Rep | 2020 Oct 13 |
| Chronic Zinc Deficiency Alters Chick Gut Microbiota Composition and Function. | Reed S, Neuman H, Moscovich S, Glahn RP, Koren O, Tako E | Nutrients | 26633470 | Nutrients | 2015 Nov 27 |
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| Perhexiline activates KLF14 and reduces atherosclerosis by modulating ApoA-I production. | Guo Y, Fan Y, Zhang J, Lomberk GA, Zhou Z, Sun L, Mathison AJ, Garcia-Barrio MT, Zhang J, Zeng L, Li L, Pennathur S, Willer CJ, Rader DJ, Urrutia R, Chen YE | The Journal of clinical investigation | 26368306 | J Clin Invest | 2015 Oct 1 |
| Metabolomics Analysis Reveals that AICAR Affects Glycerolipid, Ceramide and Nucleotide Synthesis Pathways in INS-1 Cells. | ElAzzouny MA, Evans CR, Burant CF, Kennedy RT | PloS one | 26107620 | PLoS One | 2015 |
| The macrophage phagocytic receptor CD36 promotes fibrogenic pathways on removal of apoptotic cells during chronic kidney injury. | Pennathur S, Pasichnyk K, Bahrami NM, Zeng L, Febbraio M, Yamaguchi I, Okamura DM | The American journal of pathology | 26092500 | Am J Pathol | 2015 Aug |
| Maximal oxidative capacity during exercise is associated with skeletal muscle fuel selection and dynamic changes in mitochondrial protein acetylation. | Overmyer KA, Evans CR, Qi NR, Minogue CE, Carson JJ, Chermside-Scabbo CJ, Koch LG, Britton SL, Pagliarini DJ, Coon JJ, Burant CF | Cell metabolism | 25738461 | Cell Metab | 2015 Mar 3 |
| Developmental programming: exposure to testosterone excess disrupts steroidal and metabolic environment in pregnant sheep. | Abi Salloum B, Veiga-Lopez A, Abbott DH, Burant CF, Padmanabhan V | Endocrinology | 25763641 | Endocrinology | 2015 Jun |
| 18F-Choline PET/MRI: The Additional Value of PET for MRI-Guided Transrectal Prostate Biopsies. | Piert M, Montgomery J, Kunju LP, Siddiqui J, Rogers V, Rajendiran T, Johnson TD, Shao X, Davenport MS | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 26985061 | J Nucl Med | 2016 Jul |
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| Glycolysis Is an Intrinsic Factor for Optimal Replication of a Norovirus. | Passalacqua KD, Lu J, Goodfellow I, Kolawole AO, Arche JR, Maddox RJ, Carnahan KE, O'Riordan MXD, Wobus CE | mBio | 30862747 | mBio | 2019 Mar 12 |
| Metabolomic signatures associated with weight gain and psychosis spectrum diagnoses: A pilot study. | Lee J, Costa-Dookhan K, Panganiban K, MacKenzie N, Treen QC, Chintoh A, Remington G, Müller DJ, Sockalingam S, Gerretsen P, Sanches M, Karnovsky A, Stringer KA, Ellingrod VL, Tso IF, Taylor SF, Agarwal SM, Hahn MK, Ward KM | Frontiers in psychiatry | 37168086 | Front Psychiatry | 2023 |
| System-based integrated metabolomics and microRNA analysis identifies potential molecular alterations in human X-linked cerebral adrenoleukodystrophy brain. | Poisson LM, Kaur N, Felicella MM, Singh J | Human molecular genetics | 37656183 | Hum Mol Genet | 2023 Nov 17 |
| Both moderate- and high-intensity exercise training increase intramyocellular lipid droplet abundance and modify myocellular distribution in adults with obesity. | Schleh MW, Ahn C, Ryan BJ, Chugh OK, Luker AT, Luker KE, Gillen JB, Ludzki AC, Van Pelt DW, Pitchford LM, Zhang T, Rode T, Howton SM, Burant CF, Horowitz JF | American journal of physiology. Endocrinology and metabolism | 37729021 | Am J Physiol Endocrinol Metab | 2023 Nov 1 |
| Performance comparison of three trypsin columns used in liquid chromatography. | Šlechtová T, Gilar M, Kalíková K, Moore SM, Jorgenson JW, Tesařová E | Journal of chromatography. A | 28215403 | J Chromatogr A | 2017 Mar 24 |
| Ectonucleotidase CD39-driven control of postinfarction myocardial repair and rupture. | Sutton NR, Hayasaki T, Hyman MC, Anyanwu AC, Liao H, Petrovic-Djergovic D, Badri L, Baek AE, Walker N, Fukase K, Kanthi Y, Visovatti SH, Horste EL, Ray JJ, Goonewardena SN, Pinsky DJ | JCI insight | 28097233 | JCI Insight | 2017 Jan 12 |
| Weight gain in mice on a high caloric diet and chronically treated with omeprazole depends on sex and genetic background. | Saqui-Salces M, Tsao AC, Gillilland MG 3rd, Merchant JL | American journal of physiology. Gastrointestinal and liver physiology | 27810953 | Am J Physiol Gastrointest Liver Physiol | 2017 Jan 1 |
| Extraction, Enrichment, Solubilization, and Digestion Techniques for Membrane Proteomics. | Moore SM, Hess SM, Jorgenson JW | Journal of proteome research | 26979493 | J Proteome Res | 2016 Apr 1 |
| Bipolar disorder moderates associations between linoleic acid and markers of inflammation. | Chang YW, Assari S, Prossin AR, Stertz L, McInnis MG, Evans SJ | Journal of psychiatric research | 27821270 | J Psychiatr Res | 2017 Feb |
| Calcium Reduces Liver Injury in Mice on a High-Fat Diet: Alterations in Microbial and Bile Acid Profiles. | Nadeem Aslam M, Bassis CM, Zhang L, Zaidi S, Varani J, Bergin IL | PloS one | 27851786 | PLoS One | 2016 |
| Development of a 45kpsi ultrahigh pressure liquid chromatography instrument for gradient separations of peptides using long microcapillary columns and sub-2μm particles. | Grinias KM, Godinho JM, Franklin EG, Stobaugh JT, Jorgenson JW | Journal of chromatography. A | 27702615 | J Chromatogr A | 2016 Oct 21 |
| Rescue of Metabolic Alterations in AR113Q Skeletal Muscle by Peripheral Androgen Receptor Gene Silencing. | Giorgetti E, Yu Z, Chua JP, Shimamura R, Zhao L, Zhu F, Venneti S, Pennuto M, Guan Y, Hung G, Lieberman AP | Cell reports | 27681426 | Cell Rep | 2016 Sep 27 |
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| Compound NSC84167 selectively targets NRF2-activated pancreatic cancer by inhibiting asparagine synthesis pathway. | Dai B, Augustine JJ, Kang Y, Roife D, Li X, Deng J, Tan L, Rusling LA, Weinstein JN, Lorenzi PL, Kim MP, Fleming JB | Cell death & disease | 34247201 | Cell Death Dis | 2021 Jul 10 |
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| The Glutaminase Inhibitor CB-839 (Telaglenastat) Enhances the Antimelanoma Activity of T-Cell-Mediated Immunotherapies. | Varghese S, Pramanik S, Williams LJ, Hodges HR, Hudgens CW, Fischer GM, Luo CK, Knighton B, Tan L, Lorenzi PL, Mackinnon AL, McQuade JL, Hailemichael Y, Roszik J, Peng W, Vashisht Gopal YN | Molecular cancer therapeutics | 33361272 | Mol Cancer Ther | 2021 Mar |
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| Targeting MYC-enhanced glycolysis for the treatment of small cell lung cancer. | Cargill KR, Stewart CA, Park EM, Ramkumar K, Gay CM, Cardnell RJ, Wang Q, Diao L, Shen L, Fan YH, Chan WK, Lorenzi PL, Oliver TG, Wang J, Byers LA | Cancer & metabolism | 34556188 | Cancer Metab | 2021 Sep 23 |
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| Analyzing Mass Spectrometry Imaging Data of (13)C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos. | Romsdahl TB, Kambhampati S, Koley S, Yadav UP, Alonso AP, Allen DK, Chapman KD | Metabolites | 33806402 | Metabolites | 2021 Mar 4 |
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| Metabolic Fluxes in the Renal Cortex Are Dysregulated In Vivo in Response to High-Fat Diet. | Hasenour CM, Banerjee DR, Young JD | Diabetes | 38502790 | Diabetes | 2024 Jun 1 |
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| Metabolic flux analysis of the non-transitory starch tradeoff for lipid production in mature tobacco leaves. | Chu KL, Koley S, Jenkins LM, Bailey SR, Kambhampati S, Foley K, Arp JJ, Morley SA, Czymmek KJ, Bates PD, Allen DK | Metabolic engineering | 34920088 | Metab Eng | 2022 Jan |
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| Enhanced in-Source Fragmentation Annotation Enables Novel Data Independent Acquisition and Autonomous METLIN Molecular Identification. | Xue J, Domingo-Almenara X, Guijas C, Palermo A, Rinschen MM, Isbell J, Benton HP, Siuzdak G | Analytical chemistry | 32242660 | Anal Chem | 2020 Apr 21 |
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| Comprehensive Meta-Analysis of COVID-19 Global Metabolomics Datasets. | Pang Z, Zhou G, Chong J, Xia J | Metabolites | 33435351 | Metabolites | 2021 Jan 9 |
| A pilot metabolomic study of drug interaction with the immune response to seasonal influenza vaccination. | Siddiqa A, Wang Y, Thapa M, Martin DE, Cadar AN, Bartley JM, Li S | NPJ vaccines | 37308481 | NPJ Vaccines | 2023 Jun 12 |
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| Metabolomics activity screening of T cell-induced colitis reveals anti-inflammatory metabolites. | Montenegro-Burke JR, Kok BP, Guijas C, Domingo-Almenara X, Moon C, Galmozzi A, Kitamura S, Eckmann L, Saez E, Siuzdak GE, Wolan DW | Science signaling | 34582249 | Sci Signal | 2021 Sep 28 |
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| Predicting the Predicted: A Comparison of Machine Learning-Based Collision Cross-Section Prediction Models for Small Molecules. | de Cripan SM, Arora T, Olomí A, Canela N, Siuzdak G, Domingo-Almenara X | Analytical chemistry | 38783786 | Anal Chem | 2024 Jun 4 |
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| Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging. | Burnum-Johnson KE, Baker ES, Metz TO | Placenta | 28392013 | Placenta | 2017 Dec |
| Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses. | Zheng X, Wojcik R, Zhang X, Ibrahim YM, Burnum-Johnson KE, Orton DJ, Monroe ME, Moore RJ, Smith RD, Baker ES | Annual review of analytical chemistry (Palo Alto, Calif.) | 28301728 | Annu Rev Anal Chem (Palo Alto Calif) | 2017 Jun 12 |
| Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses. | Zheng X, Zhang X, Schocker NS, Renslow RS, Orton DJ, Khamsi J, Ashmus RA, Almeida IC, Tang K, Costello CE, Smith RD, Michael K, Baker ES | Analytical and bioanalytical chemistry | 27604268 | Anal Bioanal Chem | 2017 Jan |
| An Interlaboratory Evaluation of Drift Tube Ion Mobility-Mass Spectrometry Collision Cross Section Measurements. | Stow SM, Causon TJ, Zheng X, Kurulugama RT, Mairinger T, May JC, Rennie EE, Baker ES, Smith RD, McLean JA, Hann S, Fjeldsted JC | Analytical chemistry | 28763190 | Anal Chem | 2017 Sep 5 |
| Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations. | Nagy G, Chouinard CD, Attah IK, Webb IK, Garimella SVB, Ibrahim YM, Baker ES, Smith RD | Electrophoresis | 30168603 | Electrophoresis | 2018 Dec |
| Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry. | Baker ES, Burnum-Johnson KE, Jacobs JM, Diamond DL, Brown RN, Ibrahim YM, Orton DJ, Piehowski PD, Purdy DE, Moore RJ, Danielson WF 3rd, Monroe ME, Crowell KL, Slysz GW, Gritsenko MA, Sandoval JD, Lamarche BL, Matzke MM, Webb-Robertson BJ, Simons BC, McMahon BJ, Bhattacharya R, Perkins JD, Carithers RL Jr, Strom S, Self SG, Katze MG, Anderson GA, Smith RD | Molecular & cellular proteomics : MCP | 24403597 | Mol Cell Proteomics | 2014 Apr |
| Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements. | Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH | Journal of the American Society for Mass Spectrometry | 24796262 | J Am Soc Mass Spectrom | 2014 Dec |
| Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry. | Kyle JE, Aly N, Zheng X, Burnum-Johnson KE, Smith RD, Baker ES | Bioanalysis | 29494212 | Bioanalysis | 2018 Mar 1 |
| Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform. | Ibrahim YM, Garimella SV, Prost SA, Wojcik R, Norheim RV, Baker ES, Rusyn I, Smith RD | Analytical chemistry | 28193022 | Anal Chem | 2016 Dec 20 |
| Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches. | Zheng X, Smith RD, Baker ES | Current opinion in chemical biology | 29223060 | Curr Opin Chem Biol | 2018 Feb |
| SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids. | Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, Blackwell AE, Swinford G, Sausen J, Kurulugama RT, Eno N, Darland E, Stafford G, Fjeldsted J, Metz TO, Teeguarden JG, Smith RD, Baker ES | Clinical mass spectrometry (Del Mar, Calif.) | 29276770 | Clin Mass Spectrom | 2016 Dec |
| Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry. | Zheng X, Renslow RS, Makola MM, Webb IK, Deng L, Thomas DG, Govind N, Ibrahim YM, Kabanda MM, Dubery IA, Heyman HM, Smith RD, Madala NE, Baker ES | The journal of physical chemistry letters | 28267339 | J Phys Chem Lett | 2017 Apr 6 |
| Surprising impact of remote groups on the folding--unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. | Liu R, Chen S, Baker ES, Smith RD, Zeng XC, Gong B | Chemical communications (Cambridge, England) | 26830456 | Chem Commun (Camb) | 2016 Mar 7 |
| PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association. | Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO | Bioinformatics (Oxford, England) | 28505286 | Bioinformatics | 2017 Sep 1 |
| Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go? | Metz TO, Baker ES, Schymanski EL, Renslow RS, Thomas DG, Causon TJ, Webb IK, Hann S, Smith RD, Teeguarden JG | Bioanalysis | 27921453 | Bioanalysis | 2017 Jan |
| Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform. | Cong Y, Katipamula S, Trader CD, Orton DJ, Geng T, Baker ES, Kelly RT | Lab on a chip | 27009517 | Lab Chip | 2016 Apr 26 |
| A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. | Zheng X, Aly NA, Zhou Y, Dupuis KT, Bilbao A, Paurus VL, Orton DJ, Wilson R, Payne SH, Smith RD, Baker ES | Chemical science | 29568436 | Chem Sci | 2017 Nov 1 |
| The MPLEx Protocol for Multi-omic Analyses of Soil Samples. | Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA 3rd, Roy Chowdhury T, Kyle JE, Kim YM, Smith RD, Metz TO, Jansson JK, Baker ES | Journal of visualized experiments : JoVE | 29912205 | J Vis Exp | 2018 May 30 |
| Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations. | Chouinard CD, Nagy G, Webb IK, Garimella SVB, Baker ES, Ibrahim YM, Smith RD | Analytical chemistry | 30102518 | Anal Chem | 2018 Sep 18 |
| From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem. | Khadempour L, Kyle JE, Webb-Robertson BM, Nicora CD, Smith FB, Smith RD, Lipton MS, Currie CR, Baker ES, Burnum-Johnson KE | mSystems | 33758033 | mSystems | 2021 Mar 23 |
| Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. | MacLean BX, Pratt BS, Egertson JD, MacCoss MJ, Smith RD, Baker ES | Journal of the American Society for Mass Spectrometry | 30047074 | J Am Soc Mass Spectrom | 2018 Nov |
| Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples. | Burnum-Johnson KE, Zheng X, Dodds JN, Ash J, Fourches D, Nicora CD, Wendler JP, Metz TO, Waters KM, Jansson JK, Smith RD, Baker ES | Trends in analytical chemistry : TRAC | 31798197 | Trends Analyt Chem | 2019 Jul |
| High Resolution Separations and Improved Ion Production and Transmission in Metabolomics. | Metz TO, Page JS, Baker ES, Tang K, Ding J, Shen Y, Smith RD | Trends in analytical chemistry : TRAC | 19255623 | Trends Analyt Chem | 2008 Mar |
| The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates. | Khadempour L, Burnum-Johnson KE, Baker ES, Nicora CD, Webb-Robertson BM, White RA 3rd, Monroe ME, Huang EL, Smith RD, Currie CR | Molecular ecology | 27696597 | Mol Ecol | 2016 Nov |
| LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. | Crowell KL, Slysz GW, Baker ES, LaMarche BL, Monroe ME, Ibrahim YM, Payne SH, Anderson GA, Smith RD | Bioinformatics (Oxford, England) | 24008421 | Bioinformatics | 2013 Nov 1 |
| Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus. | Cha J, Burnum-Johnson KE, Bartos A, Li Y, Baker ES, Tilton SC, Webb-Robertson BJ, Piehowski PD, Monroe ME, Jegga AG, Murata S, Hirota Y, Dey SK | The Journal of biological chemistry | 25931120 | J Biol Chem | 2015 Jun 12 |
| Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer. | Ibrahim YM, Baker ES, Danielson WF 3rd, Norheim RV, Prior DC, Anderson GA, Belov ME, Smith RD | International journal of mass spectrometry | 26185483 | Int J Mass Spectrom | 2015 Feb 1 |
| A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements. | Orton DJ, Tfaily MM, Moore RJ, LaMarche BL, Zheng X, Fillmore TL, Chu RK, Weitz KK, Monroe ME, Kelly RT, Smith RD, Baker ES | Analytical chemistry | 29161511 | Anal Chem | 2018 Jan 2 |
| An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies. | Bilbao A, Gibbons BC, Slysz GW, Crowell KL, Monroe ME, Ibrahim YM, Smith RD, Payne SH, Baker ES | International journal of mass spectrometry | 29706793 | Int J Mass Spectrom | 2018 Apr |
| Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies. | Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, Smith RD, Burnum-Johnson KE, Baker ES | Rapid communications in mass spectrometry : RCM | 27958645 | Rapid Commun Mass Spectrom | 2017 Mar 15 |
| Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry. | Zheng X, Deng L, Baker ES, Ibrahim YM, Petyuk VA, Smith RD | Chemical communications (Cambridge, England) | 28654112 | Chem Commun (Camb) | 2017 Jul 11 |
| Microbiota-Dependent Hepatic Lipogenesis Mediated by Stearoyl CoA Desaturase 1 (SCD1) Promotes Metabolic Syndrome in TLR5-Deficient Mice. | Singh V, Chassaing B, Zhang L, San Yeoh B, Xiao X, Kumar M, Baker MT, Cai J, Walker R, Borkowski K, Harvatine KJ, Singh N, Shearer GC, Ntambi JM, Joe B, Patterson AD, Gewirtz AT, Vijay-Kumar M | Cell metabolism | 26525535 | Cell Metab | 2015 Dec 1 |
| Optimization of harvesting, extraction, and analytical protocols for UPLC-ESI-MS-based metabolomic analysis of adherent mammalian cancer cells. | Bi H, Krausz KW, Manna SK, Li F, Johnson CH, Gonzalez FJ | Analytical and bioanalytical chemistry | 23604415 | Anal Bioanal Chem | 2013 Jun |
| A metabolomics investigation of non-genotoxic carcinogenicity in the rat. | Ament Z, Waterman CL, West JA, Waterfield C, Currie RA, Wright J, Griffin JL | Journal of proteome research | 24161236 | J Proteome Res | 2013 Dec 6 |
| Towards metabolic biomarkers of insulin resistance and type 2 diabetes: progress from the metabolome. | Roberts LD, Koulman A, Griffin JL | The lancet. Diabetes & endocrinology | 24622670 | Lancet Diabetes Endocrinol | 2014 Jan |
| Lipid metabolism and lipophagy in cancer. | Maan M, Peters JM, Dutta M, Patterson AD | Biochemical and biophysical research communications | 29438712 | Biochem Biophys Res Commun | 2018 Oct 7 |
| The aryl hydrocarbon receptor as a moderator of host-microbiota communication. | Zhang L, Nichols RG, Patterson AD | Current opinion in toxicology | 29527582 | Curr Opin Toxicol | 2017 Feb |
| Intestine farnesoid X receptor agonist and the gut microbiota activate G-protein bile acid receptor-1 signaling to improve metabolism. | Pathak P, Xie C, Nichols RG, Ferrell JM, Boehme S, Krausz KW, Patterson AD, Gonzalez FJ, Chiang JYL | Hepatology (Baltimore, Md.) | 29486523 | Hepatology | 2018 Oct |
| Intestine-selective farnesoid X receptor inhibition improves obesity-related metabolic dysfunction. | Jiang C, Xie C, Lv Y, Li J, Krausz KW, Shi J, Brocker CN, Desai D, Amin SG, Bisson WH, Liu Y, Gavrilova O, Patterson AD, Gonzalez FJ | Nature communications | 26670557 | Nat Commun | 2015 Dec 15 |
| Role of fibroblast growth factor 21 in the early stage of NASH induced by methionine- and choline-deficient diet. | Tanaka N, Takahashi S, Zhang Y, Krausz KW, Smith PB, Patterson AD, Gonzalez FJ | Biochimica et biophysica acta | 25736301 | Biochim Biophys Acta | 2015 Jul |
| Persistent Organic Pollutants Modify Gut Microbiota-Host Metabolic Homeostasis in Mice Through Aryl Hydrocarbon Receptor Activation. | Zhang L, Nichols RG, Correll J, Murray IA, Tanaka N, Smith PB, Hubbard TD, Sebastian A, Albert I, Hatzakis E, Gonzalez FJ, Perdew GH, Patterson AD | Environmental health perspectives | 25768209 | Environ Health Perspect | 2015 Jul |
| An Intestinal Farnesoid X Receptor-Ceramide Signaling Axis Modulates Hepatic Gluconeogenesis in Mice. | Xie C, Jiang C, Shi J, Gao X, Sun D, Sun L, Wang T, Takahashi S, Anitha M, Krausz KW, Patterson AD, Gonzalez FJ | Diabetes | 28223344 | Diabetes | 2017 Mar |
| Crucial role of macrophage selenoproteins in experimental colitis. | Kaushal N, Kudva AK, Patterson AD, Chiaro C, Kennett MJ, Desai D, Amin S, Carlson BA, Cantorna MT, Prabhu KS | Journal of immunology (Baltimore, Md. : 1950) | 25187657 | J Immunol | 2014 Oct 1 |
| Metabolomics Reveals that Aryl Hydrocarbon Receptor Activation by Environmental Chemicals Induces Systemic Metabolic Dysfunction in Mice. | Zhang L, Hatzakis E, Nichols RG, Hao R, Correll J, Smith PB, Chiaro CR, Perdew GH, Patterson AD | Environmental science & technology | 26023891 | Environ Sci Technol | 2015 Jul 7 |
| Antioxidant Drug Tempol Promotes Functional Metabolic Changes in the Gut Microbiota. | Cai J, Zhang L, Jones RA, Correll JB, Hatzakis E, Smith PB, Gonzalez FJ, Patterson AD | Journal of proteome research | 26696396 | J Proteome Res | 2016 Feb 5 |
| Metabolomics dataset of PPAR-pan treated rat liver. | Ament Z, West JA, Stanley E, Li X, Ashmore T, Roberts LD, Wright J, Nicholls AW, Griffin JL | Data in brief | 27331087 | Data Brief | 2016 Sep |
| A Comprehensive UHPLC Ion Mobility Quadrupole Time-of-Flight Method for Profiling and Quantification of Eicosanoids, Other Oxylipins, and Fatty Acids. | Hinz C, Liggi S, Mocciaro G, Jung S, Induruwa I, Pereira M, Bryant CE, Meckelmann SW, O'Donnell VB, Farndale RW, Fjeldsted J, Griffin JL | Analytical chemistry | 31074960 | Anal Chem | 2019 Jul 2 |
| Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota. | Li G, Xie C, Lu S, Nichols RG, Tian Y, Li L, Patel D, Ma Y, Brocker CN, Yan T, Krausz KW, Xiang R, Gavrilova O, Patterson AD, Gonzalez FJ | Cell metabolism | 28918936 | Cell Metab | 2017 Oct 3 |
| Metabolomics: an essential tool to understand the function of peroxisome proliferator-activated receptor alpha. | Montanez JE, Peters JM, Correll JB, Gonzalez FJ, Patterson AD | Toxicologic pathology | 23197196 | Toxicol Pathol | 2013 Feb |
| The aryl hydrocarbon receptor activates ceramide biosynthesis in mice contributing to hepatic lipogenesis. | Liu Q, Zhang L, Allman EL, Hubbard TD, Murray IA, Hao F, Tian Y, Gui W, Nichols RG, Smith PB, Anitha M, Perdew GH, Patterson AD | Toxicology | 34097992 | Toxicology | 2021 Jun 30 |
| Stable isotope- and mass spectrometry-based metabolomics as tools in drug metabolism: a study expanding tempol pharmacology. | Li F, Pang X, Krausz KW, Jiang C, Chen C, Cook JA, Krishna MC, Mitchell JB, Gonzalez FJ, Patterson AD | Journal of proteome research | 23301521 | J Proteome Res | 2013 Mar 1 |
| Role of white adipose lipolysis in the development of NASH induced by methionine- and choline-deficient diet. | Tanaka N, Takahashi S, Fang ZZ, Matsubara T, Krausz KW, Qu A, Gonzalez FJ | Biochimica et biophysica acta | 25178843 | Biochim Biophys Acta | 2014 Nov |
| LC-MS-based metabolomics: an update. | Fang ZZ, Gonzalez FJ | Archives of toxicology | 24710571 | Arch Toxicol | 2014 Aug |
| Activation of intestinal hypoxia-inducible factor 2α during obesity contributes to hepatic steatosis. | Xie C, Yagai T, Luo Y, Liang X, Chen T, Wang Q, Sun D, Zhao J, Ramakrishnan SK, Sun L, Jiang C, Xue X, Tian Y, Krausz KW, Patterson AD, Shah YM, Wu Y, Jiang C, Gonzalez FJ | Nature medicine | 29035368 | Nat Med | 2017 Nov |
| Intestinal farnesoid X receptor signaling promotes nonalcoholic fatty liver disease. | Jiang C, Xie C, Li F, Zhang L, Nichols RG, Krausz KW, Cai J, Qi Y, Fang ZZ, Takahashi S, Tanaka N, Desai D, Amin SG, Albert I, Patterson AD, Gonzalez FJ | The Journal of clinical investigation | 25500885 | J Clin Invest | 2015 Jan |
| Hepatic steatosis risk is partly driven by increased de novo lipogenesis following carbohydrate consumption. | Sanders FWB, Acharjee A, Walker C, Marney L, Roberts LD, Imamura F, Jenkins B, Case J, Ray S, Virtue S, Vidal-Puig A, Kuh D, Hardy R, Allison M, Forouhi N, Murray AJ, Wareham N, Vacca M, Koulman A, Griffin JL | Genome biology | 29925420 | Genome Biol | 2018 Jun 20 |
| Metabolomics Reveals Aryl Hydrocarbon Receptor Activation Induces Liver and Mammary Gland Metabolic Dysfunction in Lactating Mice. | Belton KR, Tian Y, Zhang L, Anitha M, Smith PB, Perdew GH, Patterson AD | Journal of proteome research | 29521512 | J Proteome Res | 2018 Apr 6 |
| Interplay Between the Host, the Human Microbiome, and Drug Metabolism. | Nichols RG, Peters JM, Patterson AD | Human genomics | 31186074 | Hum Genomics | 2019 Jun 11 |
| Structural and Functional Analysis of the Gut Microbiome for Toxicologists. | Nichols RG, Cai J, Murray IA, Koo I, Smith PB, Perdew GH, Patterson AD | Current protocols in toxicology | 30230220 | Curr Protoc Toxicol | 2018 Nov |
| Aryl hydrocarbon receptor ligands in cancer: friend and foe. | Murray IA, Patterson AD, Perdew GH | Nature reviews. Cancer | 25568920 | Nat Rev Cancer | 2014 Dec |
| Quantitative analysis of purine nucleotides indicates that purinosomes increase de novo purine biosynthesis. | Zhao H, Chiaro CR, Zhang L, Smith PB, Chan CY, Pedley AM, Pugh RJ, French JB, Patterson AD, Benkovic SJ | The Journal of biological chemistry | 25605736 | J Biol Chem | 2015 Mar 13 |
| Does our gut microbiome predict cardiovascular risk? A review of the evidence from metabolomics. | Griffin JL, Wang X, Stanley E | Circulation. Cardiovascular genetics | 25691688 | Circ Cardiovasc Genet | 2015 Feb |
| Kernel approaches for differential expression analysis of mass spectrometry-based metabolomics data. | Zhan X, Patterson AD, Ghosh D | BMC bioinformatics | 25887233 | BMC Bioinformatics | 2015 Mar 11 |
| Microbial determinants of biochemical individuality and their impact on toxicology and pharmacology. | Patterson AD, Turnbaugh PJ | Cell metabolism | 25156450 | Cell Metab | 2014 Nov 4 |
| A review of analytical platforms for accurate bile acid measurement. | Dutta M, Cai J, Gui W, Patterson AD | Analytical and bioanalytical chemistry | 31127337 | Anal Bioanal Chem | 2019 Jul |
| PPAR-pan activation induces hepatic oxidative stress and lipidomic remodelling. | Ament Z, West JA, Stanley E, Ashmore T, Roberts LD, Wright J, Nicholls AW, Griffin JL | Free radical biology & medicine | 26654758 | Free Radic Biol Med | 2016 Jun |
| Noninvasive urinary metabolomic profiling identifies diagnostic and prognostic markers in lung cancer. | Mathé EA, Patterson AD, Haznadar M, Manna SK, Krausz KW, Bowman ED, Shields PG, Idle JR, Smith PB, Anami K, Kazandjian DG, Hatzakis E, Gonzalez FJ, Harris CC | Cancer research | 24736543 | Cancer Res | 2014 Jun 15 |
| An Intestinal Microbiota-Farnesoid X Receptor Axis Modulates Metabolic Disease. | Gonzalez FJ, Jiang C, Patterson AD | Gastroenterology | 27639801 | Gastroenterology | 2016 Nov |
| Expression of the aryl hydrocarbon receptor contributes to the establishment of intestinal microbial community structure in mice. | Murray IA, Nichols RG, Zhang L, Patterson AD, Perdew GH | Scientific reports | 27659481 | Sci Rep | 2016 Sep 23 |
| Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity. | Cai J, Nichols RG, Koo I, Kalikow ZA, Zhang L, Tian Y, Zhang J, Smith PB, Patterson AD | mSystems | 30417115 | mSystems | 2018 Nov-Dec |
| Lactate metabolism is associated with mammalian mitochondria. | Chen YJ, Mahieu NG, Huang X, Singh M, Crawford PA, Johnson SL, Gross RW, Schaefer J, Patti GJ | Nature chemical biology | 27618187 | Nat Chem Biol | 2016 Nov |
| Defining and Detecting Complex Peak Relationships in Mass Spectral Data: The Mz.unity Algorithm. | Mahieu NG, Spalding JL, Gelman SJ, Patti GJ | Analytical chemistry | 27513885 | Anal Chem | 2016 Sep 20 |
| Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database. | Zhu ZJ, Schultz AW, Wang J, Johnson CH, Yannone SM, Patti GJ, Siuzdak G | Nature protocols | 23391889 | Nat Protoc | 2013 Mar |
| Toward 'omic scale metabolite profiling: a dual separation-mass spectrometry approach for coverage of lipid and central carbon metabolism. | Ivanisevic J, Zhu ZJ, Plate L, Tautenhahn R, Chen S, O'Brien PJ, Johnson CH, Marletta MA, Patti GJ, Siuzdak G | Analytical chemistry | 23781873 | Anal Chem | 2013 Jul 16 |
| X13CMS: global tracking of isotopic labels in untargeted metabolomics. | Huang X, Chen YJ, Cho K, Nikolskiy I, Crawford PA, Patti GJ | Analytical chemistry | 24397582 | Anal Chem | 2014 Feb 4 |
| Radioresistant Cervical Cancers Are Sensitive to Inhibition of Glycolysis and Redox Metabolism. | Rashmi R, Huang X, Floberg JM, Elhammali AE, McCormick ML, Patti GJ, Spitz DR, Schwarz JK | Cancer research | 29339540 | Cancer Res | 2018 Mar 15 |
| An accelerated workflow for untargeted metabolomics using the METLIN database. | Tautenhahn R, Cho K, Uritboonthai W, Zhu Z, Patti GJ, Siuzdak G | Nature biotechnology | 22965049 | Nat Biotechnol | 2012 Sep |
| After the feature presentation: technologies bridging untargeted metabolomics and biology. | Cho K, Mahieu NG, Johnson SL, Patti GJ | Current opinion in biotechnology | 24816495 | Curr Opin Biotechnol | 2014 Aug |
| Autonomous metabolomics for rapid metabolite identification in global profiling. | Benton HP, Ivanisevic J, Mahieu NG, Kurczy ME, Johnson CH, Franco L, Rinehart D, Valentine E, Gowda H, Ubhi BK, Tautenhahn R, Gieschen A, Fields MW, Patti GJ, Siuzdak G | Analytical chemistry | 25496351 | Anal Chem | 2015 Jan 20 |
| Credentialing features: a platform to benchmark and optimize untargeted metabolomic methods. | Mahieu NG, Huang X, Chen YJ, Patti GJ | Analytical chemistry | 25160088 | Anal Chem | 2014 Oct 7 |
| Monitoring metabolic responses to chemotherapy in single cells and tumors using nanostructure-initiator mass spectrometry (NIMS) imaging. | O'Brien PJ, Lee M, Spilker ME, Zhang CC, Yan Z, Nichols TC, Li W, Johnson CH, Patti GJ, Siuzdak G | Cancer & metabolism | 24280026 | Cancer Metab | 2013 Jan 23 |
| A roadmap for the XCMS family of software solutions in metabolomics. | Mahieu NG, Genenbacher JL, Patti GJ | Current opinion in chemical biology | 26673825 | Curr Opin Chem Biol | 2016 Feb |
| Evidence that 2-hydroxyglutarate is not readily metabolized in colorectal carcinoma cells. | Gelman SJ, Mahieu NG, Cho K, Llufrio EM, Wencewicz TA, Patti GJ | Cancer & metabolism | 26629338 | Cancer Metab | 2015 |
| Knockdown of triglyceride synthesis does not enhance palmitate lipotoxicity or prevent oleate-mediated rescue in rat hepatocytes. | Leamy AK, Hasenour CM, Egnatchik RA, Trenary IA, Yao CH, Patti GJ, Shiota M, Young JD | Biochimica et biophysica acta | 27249207 | Biochim Biophys Acta | 2016 Sep |
| Trace Phosphate Improves ZIC-pHILIC Peak Shape, Sensitivity, and Coverage for Untargeted Metabolomics. | Spalding JL, Naser FJ, Mahieu NG, Johnson SL, Patti GJ | Journal of proteome research | 30160483 | J Proteome Res | 2018 Oct 5 |
| The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors. | Dougherty JD, Maloney SE, Wozniak DF, Rieger MA, Sonnenblick L, Coppola G, Mahieu NG, Zhang J, Cai J, Patti GJ, Abrahams BS, Geschwind DH, Heintz N | The Journal of neuroscience : the official journal of the Society for Neuroscience | 23407934 | J Neurosci | 2013 Feb 13 |
| Metabolomic data streaming for biology-dependent data acquisition. | Rinehart D, Johnson CH, Nguyen T, Ivanisevic J, Benton HP, Lloyd J, Arkin AP, Deutschbauer AM, Patti GJ, Siuzdak G | Nature biotechnology | 24911492 | Nat Biotechnol | 2014 Jun |
| Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses. | Gowda H, Ivanisevic J, Johnson CH, Kurczy ME, Benton HP, Rinehart D, Nguyen T, Ray J, Kuehl J, Arevalo B, Westenskow PD, Wang J, Arkin AP, Deutschbauer AM, Patti GJ, Siuzdak G | Analytical chemistry | 24934772 | Anal Chem | 2014 Jul 15 |
| Inflammation triggers production of dimethylsphingosine from oligodendrocytes. | Chen YJ, Hill S, Huang H, Taraboletti A, Cho K, Gallo R, Manchester M, Shriver LP, Patti GJ | Neuroscience | 25151189 | Neuroscience | 2014 Oct 24 |
| XCMS Online: a web-based platform to process untargeted metabolomic data. | Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G | Analytical chemistry | 22533540 | Anal Chem | 2012 Jun 5 |
| The isotridecanyl side chain of plusbacin-A3 is essential for the transglycosylase inhibition of peptidoglycan biosynthesis. | Kim SJ, Singh M, Wohlrab A, Yu TY, Patti GJ, O'Connor RD, VanNieuwenhze M, Schaefer J | Biochemistry | 23421534 | Biochemistry | 2013 Mar 19 |
| Warpgroup: increased precision of metabolomic data processing by consensus integration bound analysis. | Mahieu NG, Spalding JL, Patti GJ | Bioinformatics (Oxford, England) | 26424859 | Bioinformatics | 2016 Jan 15 |
| Defining the metabolome: size, flux, and regulation. | Zamboni N, Saghatelian A, Patti GJ | Molecular cell | 26000853 | Mol Cell | 2015 May 21 |
| Exogenous Fatty Acids Are the Preferred Source of Membrane Lipids in Proliferating Fibroblasts. | Yao CH, Fowle-Grider R, Mahieu NG, Liu GY, Chen YJ, Wang R, Singh M, Potter GS, Gross RW, Schaefer J, Johnson SL, Patti GJ | Cell chemical biology | 27049668 | Cell Chem Biol | 2016 Apr 21 |
| Discriminating precursors of common fragments for large-scale metabolite profiling by triple quadrupole mass spectrometry. | Nikolskiy I, Siuzdak G, Patti GJ | Bioinformatics (Oxford, England) | 25691443 | Bioinformatics | 2015 Jun 15 |
| Differential incorporation of glucose into biomass during Warburg metabolism. | Chen YJ, Huang X, Mahieu NG, Cho K, Schaefer J, Patti GJ | Biochemistry | 25010499 | Biochemistry | 2014 Jul 29 |
| Inaccurate quantitation of palmitate in metabolomics and isotope tracer studies due to plastics. | Yao CH, Liu GY, Yang K, Gross RW, Patti GJ | Metabolomics : Official journal of the Metabolomic Society | 27721678 | Metabolomics | 2016 Sep |
| An untargeted metabolomic workflow to improve structural characterization of metabolites. | Nikolskiy I, Mahieu NG, Chen YJ, Tautenhahn R, Patti GJ | Analytical chemistry | 23829391 | Anal Chem | 2013 Aug 20 |
| A view from above: cloud plots to visualize global metabolomic data. | Patti GJ, Tautenhahn R, Rinehart D, Cho K, Shriver LP, Manchester M, Nikolskiy I, Johnson CH, Mahieu NG, Siuzdak G | Analytical chemistry | 23206250 | Anal Chem | 2013 Jan 15 |
| Bar Coding MS(2) Spectra for Metabolite Identification. | Spalding JL, Cho K, Mahieu NG, Nikolskiy I, Llufrio EM, Johnson SL, Patti GJ | Analytical chemistry | 26837423 | Anal Chem | 2016 Mar 1 |
| Systems-Level Annotation of a Metabolomics Data Set Reduces 25 000 Features to Fewer than 1000 Unique Metabolites. | Mahieu NG, Patti GJ | Analytical chemistry | 28914531 | Anal Chem | 2017 Oct 3 |
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| Platelet microparticles infiltrating solid tumors transfer miRNAs that suppress tumor growth. | Michael JV, Wurtzel JGT, Mao GF, Rao AK, Kolpakov MA, Sabri A, Hoffman NE, Rajan S, Tomar D, Madesh M, Nieman MT, Yu J, Edelstein LC, Rowley JW, Weyrich AS, Goldfinger LE | Blood | 28500171 | Blood | 2017 Aug 3 |
| Non-genomic activities of retinoic acid receptor alpha control actin cytoskeletal events in human platelets. | Rondina MT, Freitag M, Pluthero FG, Kahr WH, Rowley JW, Kraiss LW, Franks Z, Zimmerman GA, Weyrich AS, Schwertz H | Journal of thrombosis and haemostasis : JTH | 26848712 | J Thromb Haemost | 2016 May |
| Neonatal NET-inhibitory factor and related peptides inhibit neutrophil extracellular trap formation. | Yost CC, Schwertz H, Cody MJ, Wallace JA, Campbell RA, Vieira-de-Abreu A, Araujo CV, Schubert S, Harris ES, Rowley JW, Rondina MT, Fulcher JM, Koening CL, Weyrich AS, Zimmerman GA | The Journal of clinical investigation | 27599294 | J Clin Invest | 2016 Oct 3 |
| Retinoic acid receptor-α regulates synthetic events in human platelets. | Schwertz H, Rowley JW, Zimmerman GA, Weyrich AS, Rondina MT | Journal of thrombosis and haemostasis : JTH | 28981191 | J Thromb Haemost | 2017 Dec |
| Superoxide Dismutase 2 is dispensable for platelet function. | Fidler TP, Rowley JW, Araujo C, Boudreau LH, Marti A, Souvenir R, Dale K, Boilard E, Weyrich AS, Abel ED | Thrombosis and haemostasis | 28771279 | Thromb Haemost | 2017 Oct 5 |
| Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids. | Schwertz H, Rowley JW, Schumann GG, Thorack U, Campbell RA, Manne BK, Zimmerman GA, Weyrich AS, Rondina MT | Arteriosclerosis, thrombosis, and vascular biology | 29301786 | Arterioscler Thromb Vasc Biol | 2018 Apr |
| Dicer1-mediated miRNA processing shapes the mRNA profile and function of murine platelets. | Rowley JW, Chappaz S, Corduan A, Chong MM, Campbell R, Khoury A, Manne BK, Wurtzel JG, Michael JV, Goldfinger LE, Mumaw MM, Nieman MT, Kile BT, Provost P, Weyrich AS | Blood | 26773046 | Blood | 2016 Apr 7 |
| Sepsis alters the transcriptional and translational landscape of human and murine platelets. | Middleton EA, Rowley JW, Campbell RA, Grissom CK, Brown SM, Beesley SJ, Schwertz H, Kosaka Y, Manne BK, Krauel K, Tolley ND, Eustes AS, Guo L, Paine R 3rd, Harris ES, Zimmerman GA, Weyrich AS, Rondina MT | Blood | 31366617 | Blood | 2019 Sep 19 |
| Heparanase expression and activity are increased in platelets during clinical sepsis. | Eustes AS, Campbell RA, Middleton EA, Tolley ND, Manne BK, Montenont E, Rowley JW, Krauel K, Blair A, Guo L, Kosaka Y, Medeiros-de-Moraes IM, Lacerda M, Hottz ED, Neto HCF, Zimmerman GA, Weyrich AS, Petrey A, Rondina MT | Journal of thrombosis and haemostasis : JTH | 33587773 | J Thromb Haemost | 2021 May |
| Coordinate expression of transcripts and proteins in platelets. | Rowley JW, Weyrich AS | Blood | 23813941 | Blood | 2013 Jun 27 |
| Key role of microRNA in the regulation of granulocyte macrophage colony-stimulating factor expression in murine alveolar epithelial cells during oxidative stress. | Sturrock A, Mir-Kasimov M, Baker J, Rowley J, Paine R 3rd | The Journal of biological chemistry | 24371146 | J Biol Chem | 2014 Feb 14 |
| Granzyme A in Human Platelets Regulates the Synthesis of Proinflammatory Cytokines by Monocytes in Aging. | Campbell RA, Franks Z, Bhatnagar A, Rowley JW, Manne BK, Supiano MA, Schwertz H, Weyrich AS, Rondina MT | Journal of immunology (Baltimore, Md. : 1950) | 29167233 | J Immunol | 2018 Jan 1 |
| Mitofusin-2 Regulates Platelet Mitochondria and Function. | Jacob S, Kosaka Y, Bhatlekar S, Denorme F, Benzon H, Moody A, Moody V, Tugolukova EA, Hull G, Kishimoto N, Manne BK, Guo L, Souvenir R, Seliger BJ, Eustes AS, Hoerger K, Tolley ND, Fatahian AN, Boudina S, Christiani DC, Wei Y, Ju C, Campbell RA, Rondina MT, Abel ED, Bray PF, Weyrich AS, Rowley JW | Circulation research | 38156445 | Circ Res | 2024 Jan 19 |
| Clots Are Potent Triggers of Inflammatory Cell Gene Expression: Indications for Timely Fibrinolysis. | Campbell RA, Vieira-de-Abreu A, Rowley JW, Franks ZG, Manne BK, Rondina MT, Kraiss LW, Majersik JJ, Zimmerman GA, Weyrich AS | Arteriosclerosis, thrombosis, and vascular biology | 28775073 | Arterioscler Thromb Vasc Biol | 2017 Oct |
| Platelet-derived TLT-1 is a prognostic indicator in ALI/ARDS and prevents tissue damage in the lungs in a mouse model. | Morales-Ortíz J, Deal V, Reyes F, Maldonado-Martínez G, Ledesma N, Staback F, Croft C, Pacheco A, Ortiz-Zuazaga H, Yost CC, Rowley JW, Madera B, John AS, Chen J, Lopez J, Rondina MT, Hunter R, Gibson A, Washington AV | Blood | 30282800 | Blood | 2018 Dec 6 |
| The fate of mitochondria during platelet activation. | Grichine A, Jacob S, Eckly A, Villaret J, Joubert C, Appaix F, Pezet M, Ribba AS, Denarier E, Mazzega J, Rinckel JY, Lafanechère L, Elena-Herrmann B, Rowley JW, Sadoul K | Blood advances | 37624769 | Blood Adv | 2023 Oct 24 |
| A tour through the transcriptional landscape of platelets. | Schubert S, Weyrich AS, Rowley JW | Blood | 24904119 | Blood | 2014 Jul 24 |
| Platelet abnormalities in Huntington's disease. | Denis HL, Lamontagne-Proulx J, St-Amour I, Mason SL, Rowley JW, Cloutier N, Tremblay MÈ, Vincent AT, Gould PV, Chouinard S, Weyrich AS, Rondina MT, Barker RA, Boilard E, Cicchetti F | Journal of neurology, neurosurgery, and psychiatry | 30567722 | J Neurol Neurosurg Psychiatry | 2019 Mar |
| Germline mutations in ETV6 are associated with thrombocytopenia, red cell macrocytosis and predisposition to lymphoblastic leukemia. | Noetzli L, Lo RW, Lee-Sherick AB, Callaghan M, Noris P, Savoia A, Rajpurkar M, Jones K, Gowan K, Balduini C, Pecci A, Gnan C, De Rocco D, Doubek M, Li L, Lu L, Leung R, Landolt-Marticorena C, Hunger S, Heller P, Gutierrez-Hartmann A, Xiayuan L, Pluthero FG, Rowley JW, Weyrich AS, Kahr WHA, Porter CC, Di Paola J | Nature genetics | 25807284 | Nat Genet | 2015 May |
| Platelet mRNA: the meaning behind the message. | Rowley JW, Schwertz H, Weyrich AS | Current opinion in hematology | 22814651 | Curr Opin Hematol | 2012 Sep |
| Ribosomes in platelets protect the messenger. | Rowley JW, Weyrich AS | Blood | 28450575 | Blood | 2017 Apr 27 |
| Combined variants in factor VIII and prostaglandin synthase-1 amplify hemorrhage severity across three generations of descendants. | Nance D, Campbell RA, Rowley JW, Downie JM, Jorde LB, Kahr WH, Mereby SA, Tolley ND, Zimmerman GA, Weyrich AS, Rondina MT | Journal of thrombosis and haemostasis : JTH | 27629384 | J Thromb Haemost | 2016 Nov |
| Glucose Transporter 3 Potentiates Degranulation and Is Required for Platelet Activation. | Fidler TP, Middleton EA, Rowley JW, Boudreau LH, Campbell RA, Souvenir R, Funari T, Tessandier N, Boilard E, Weyrich AS, Abel ED | Arteriosclerosis, thrombosis, and vascular biology | 28663252 | Arterioscler Thromb Vasc Biol | 2017 Sep |
| Longitudinal RNA-Seq Analysis of the Repeatability of Gene Expression and Splicing in Human Platelets Identifies a Platelet SELP Splice QTL. | Rondina MT, Voora D, Simon LM, Schwertz H, Harper JF, Lee O, Bhatlekar SC, Li Q, Eustes AS, Montenont E, Campbell RA, Tolley ND, Kosaka Y, Weyrich AS, Bray PF, Rowley JW | Circulation research | 31852401 | Circ Res | 2020 Feb 14 |
