Metabolomics
Metabolomics
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date |
|---|---|---|---|---|---|
| SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes. | Wojcik R, Nagy G, Attah IK, Webb IK, Garimella SVB, Weitz KK, Hollerbach A, Monroe ME, Ligare MR, Nielson FF, Norheim RV, Renslow RS, Metz TO, Ibrahim YM, Smith RD | Analytical chemistry | 31450886 | Anal Chem | 2019 Sep 17 |
| Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. | Nielson FF, Kay B, Young SJ, Colby SM, Renslow RS, Metz TO | Metabolites | 36677030 | Metabolites | 2023 Jan 9 |
| A Practical Guide to Metabolomics Software Development. | Chang HY, Colby SM, Du X, Gomez JD, Helf MJ, Kechris K, Kirkpatrick CR, Li S, Patti GJ, Renslow RS, Subramaniam S, Verma M, Xia J, Young JD | Analytical chemistry | 33467846 | Anal Chem | 2021 Feb 2 |
| Who Is Metabolizing What? Discovering Novel Biomolecules in the Microbiome and the Organisms Who Make Them. | Couvillion SP, Agrawal N, Colby SM, Brandvold KR, Metz TO | Frontiers in cellular and infection microbiology | 32850487 | Front Cell Infect Microbiol | 2020 |
| Introducing "Identification Probability" for Automated and Transferable Assessment of Metabolite Identification Confidence in Metabolomics and Related Studies. | Metz TO, Chang CH, Gautam V, Anjum A, Tian S, Wang F, Colby SM, Nunez JR, Blumer MR, Edison AS, Fiehn O, Jones DP, Li S, Morgan ET, Patti GJ, Ross DH, Shapiro MR, Williams AJ, Wishart DS | Analytical chemistry | 39699939 | Anal Chem | 2025 Jan 14 |
| ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries. | Colby SM, Thomas DG, Nuñez JR, Baxter DJ, Glaesemann KR, Brown JM, Pirrung MA, Govind N, Teeguarden JG, Metz TO, Renslow RS | Analytical chemistry | 30741529 | Anal Chem | 2019 Apr 2 |
| Emerging technologies and their impact on regulatory science. | Anklam E, Bahl MI, Ball R, Beger RD, Cohen J, Fitzpatrick S, Girard P, Halamoda-Kenzaoui B, Hinton D, Hirose A, Hoeveler A, Honma M, Hugas M, Ishida S, Kass GE, Kojima H, Krefting I, Liachenko S, Liu Y, Masters S, Marx U, McCarthy T, Mercer T, Patri A, Pelaez C, Pirmohamed M, Platz S, Ribeiro AJ, Rodricks JV, Rusyn I, Salek RM, Schoonjans R, Silva P, Svendsen CN, Sumner S, Sung K, Tagle D, Tong L, Tong W, Eijnden-van-Raaij JVD, Vary N, Wang T, Waterton J, Wang M, Wen H, Wishart D, Yuan Y, Slikker W Jr | Experimental biology and medicine (Maywood, N.J.) | 34783606 | Exp Biol Med (Maywood) | 2022 Jan |
| Ceramide synthase 2 deletion decreases the infectivity of HIV-1. | Barklis E, Alfadhli A, Kyle JE, Bramer LM, Bloodsworth KJ, Barklis RL, Leier HC, Petty RM, Zelnik ID, Metz TO, Futerman AH, Tafesse FG | The Journal of biological chemistry | 33515546 | J Biol Chem | 2021 Jan-Jun |
| Correction to "Chespa: Streamlining Expansive Chemical Space Evaluation of Molecular Sets". | Nuñez JR, Mcgrady M, Yesiltepe Y, Renslow RS, Metz TO | Journal of chemical information and modeling | 33871993 | J Chem Inf Model | 2021 May 24 |
| BioTransformer 3.0-a web server for accurately predicting metabolic transformation products. | Wishart DS, Tian S, Allen D, Oler E, Peters H, Lui VW, Gautam V, Djoumbou-Feunang Y, Greiner R, Metz TO | Nucleic acids research | 35536252 | Nucleic Acids Res | 2022 Jul 5 |
| Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors. | Cruz AK, Alves MA, Andresson T, Bayless AL, Bloodsworth KJ, Bowden JA, Bullock K, Burnet MC, Neto FC, Choy A, Clish CB, Couvillion SP, Cumeras R, Dailey L, Dallmann G, Davis WC, Deik AA, Dickens AM, Djukovic D, Dorrestein PC, Eder JG, Fiehn O, Flores R, Gika H, Hagiwara KA, Pham TH, Harynuk JJ, Aristizabal-Henao JJ, Hoyt DW, Jean-François F, Kråkström M, Kumar A, Kyle JE, Lamichhane S, Li Y, Nam SL, Mandal R, de la Mata AP, Meehan MJ, Meikopoulos T, Metz TO, Mouskeftara T, Munoz N, Gowda GAN, Orešic M, Panitchpakdi M, Pierre-Hugues S, Raftery D, Rushing B, Schock T, Seifried H, Servetas S, Shen T, Sumner S, Carrillo KST, Thibaut D, Trejo JB, Van Meulebroek L, Vanhaecke L, Virgiliou C, Weldon KC, Wishart DS, Zhang L, Zheng J, Da Silva S | Metabolomics : Official journal of the Metabolomic Society | 39495321 | Metabolomics | 2024 Nov 4 |
| New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells. | Couvillion SP , Zhu Y , Nagy G , Adkins JN , Ansong C , Renslow RS , Piehowski PD , Ibrahim YM , Kelly RT , Metz TO | The Analyst | 30507980 | Analyst | 2019 Jan 28 |
| CFM-ID 4.0: More Accurate ESI-MS/MS Spectral Prediction and Compound Identification. | Wang F, Liigand J, Tian S, Arndt D, Greiner R, Wishart DS | Analytical chemistry | 34403256 | Anal Chem | 2021 Aug 31 |
| CFM-ID 4.0 - a web server for accurate MS-based metabolite identification. | Wang F, Allen D, Tian S, Oler E, Gautam V, Greiner R, Metz TO, Wishart DS | Nucleic acids research | 35610037 | Nucleic Acids Res | 2022 Jul 5 |
| Mass Spectrometry Adduct Calculator. | Blumer MR, Chang CH, Brayfindley E, Nunez JR, Colby SM, Renslow RS, Metz TO | Journal of chemical information and modeling | 34842435 | J Chem Inf Model | 2021 Dec 27 |
| CyProduct: A Software Tool for Accurately Predicting the Byproducts of Human Cytochrome P450 Metabolism. | Tian S, Cao X, Greiner R, Li C, Guo A, Wishart DS | Journal of chemical information and modeling | 34038112 | J Chem Inf Model | 2021 Jun 28 |
| Introducing 'identification probability' for automated and transferable assessment of metabolite identification confidence in metabolomics and related studies. | Metz TO, Chang CH, Gautam V, Anjum A, Tian S, Wang F, Colby SM, Nunez JR, Blumer MR, Edison AS, Fiehn O, Jones DP, Li S, Morgan ET, Patti GJ, Ross DH, Shapiro MR, Williams AJ, Wishart DS | bioRxiv : the preprint server for biology | 39131324 | bioRxiv | 2024 Jul 31 |
| DEIMoS GUI: An Open-Source User Interface for a High-Dimensional Mass Spectrometry Data Processing Tool. | Oostrom MT, Colby SM, Metz TO | Journal of chemical information and modeling | 38412257 | J Chem Inf Model | 2024 Mar 11 |
| Exploring the Impacts of Conformer Selection Methods on Ion Mobility Collision Cross Section Predictions. | Nielson FF, Colby SM, Thomas DG, Renslow RS, Metz TO | Analytical chemistry | 33606495 | Anal Chem | 2021 Mar 2 |
| Quantum Chemistry Calculations for Metabolomics. | Borges RM, Colby SM, Das S, Edison AS, Fiehn O, Kind T, Lee J, Merrill AT, Merz KM Jr, Metz TO, Nunez JR, Tantillo DJ, Wang LP, Wang S, Renslow RS | Chemical reviews | 33979149 | Chem Rev | 2021 May 26 |
| Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples. | Nuñez JR, Colby SM, Thomas DG, Tfaily MM, Tolic N, Ulrich EM, Sobus JR, Metz TO, Teeguarden JG, Renslow RS | Journal of chemical information and modeling | 31430141 | J Chem Inf Model | 2019 Sep 23 |
| An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated NMR chemical shifts. | Yesiltepe Y, Govind N, Metz TO, Renslow RS | Journal of cheminformatics | 36138446 | J Cheminform | 2022 Sep 22 |
| metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics. | Habra H, Meijer JL, Shen T, Fiehn O, Gaul DA, Fernández FM, Rempfert KR, Metz TO, Peterson KE, Evans CR, Karnovsky A | Metabolites | 38393017 | Metabolites | 2024 Feb 15 |
| DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data. | Colby SM, Chang CH, Bade JL, Nunez JR, Blumer MR, Orton DJ, Bloodsworth KJ, Nakayasu ES, Smith RD, Ibrahim YM, Renslow RS, Metz TO | Analytical chemistry | 35430813 | Anal Chem | 2022 Apr 26 |
| AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry-mass spectrometry. | Lee JY, Bilbao A, Conant CR, Bloodsworth KJ, Orton DJ, Zhou M, Wilson JW, Zheng X, Webb IK, Li A, Hixson KK, Fjeldsted JC, Ibrahim YM, Payne SH, Jansson C, Smith RD, Metz TO | Bioinformatics (Oxford, England) | 34145874 | Bioinformatics | 2021 Nov 18 |
| A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants. | Farley SE, Kyle JE, Leier HC, Bramer LM, Weinstein JB, Bates TA, Lee JY, Metz TO, Schultz C, Tafesse FG | Nature communications | 35715395 | Nat Commun | 2022 Jun 17 |
| Metabolite Structure Assignment Using In Silico NMR Techniques. | Das S, Edison AS, Merz KM Jr | Analytical chemistry | 32608974 | Anal Chem | 2020 Aug 4 |
| The metabolome as a biomarker of aging in Drosophila melanogaster. | Zhao X, Golic FT, Harrison BR, Manoj M, Hoffman EV, Simon N, Johnson R, MacCoss MJ, McIntyre LM, Promislow DEL | Aging cell | 35019203 | Aging Cell | 2022 Feb |
| Unknown Metabolite Identification Using Machine Learning Collision Cross-Section Prediction and Tandem Mass Spectrometry. | Asef CK, Rainey MA, Garcia BM, Gouveia GJ, Shaver AO, Leach FE 3rd, Morse AM, Edison AS, McIntyre LM, Fernández FM | Analytical chemistry | 36595469 | Anal Chem | 2023 Jan 17 |
| Rapid and Automated Ab Initio Metabolite Collisional Cross Section Prediction from SMILES Input. | Das S, Dinpazhoh L, Tanemura KA, Merz KM Jr | Journal of chemical information and modeling | 37548575 | J Chem Inf Model | 2023 Aug 28 |
| AutoGraph: Autonomous Graph-Based Clustering of Small-Molecule Conformations. | Tanemura KA, Das S, Merz KM Jr | Journal of chemical information and modeling | 33780248 | J Chem Inf Model | 2021 Apr 26 |
| Long-Term Metabolomics Reference Material. | Gouveia GJ, Shaver AO, Garcia BM, Morse AM, Andersen EC, Edison AS, McIntyre LM | Analytical chemistry | 34156835 | Anal Chem | 2021 Jul 6 |
| Mass Spectrometry-Based Non-targeted Metabolic Profiling for Disease Detection: Recent Developments. | Zang X, Monge ME, Fernández FM | Trends in analytical chemistry : TRAC | 32831436 | Trends Analyt Chem | 2019 Sep |
| NMR: Unique Strengths That Enhance Modern Metabolomics Research. | Edison AS, Colonna M, Gouveia GJ, Holderman NR, Judge MT, Shen X, Zhang S | Analytical chemistry | 33180470 | Anal Chem | 2021 Jan 12 |
| Correlations Between LC-MS/MS-Detected Glycomics and NMR-Detected Metabolomics in Caenorhabditis elegans Development. | Sheikh MO, Tayyari F, Zhang S, Judge MT, Weatherly DB, Ponce FV, Wells L, Edison AS | Frontiers in molecular biosciences | 31316996 | Front Mol Biosci | 2019 |
| Challenges in Identifying the Dark Molecules of Life. | Monge ME, Dodds JN, Baker ES, Edison AS, Fernández FM | Annual review of analytical chemistry (Palo Alto, Calif.) | 30883183 | Annu Rev Anal Chem (Palo Alto Calif) | 2019 Jun 12 |
| Computer-aided drug design, quantum-mechanical methods for biological problems. | Manathunga M, Götz AW, Merz KM Jr | Current opinion in structural biology | 35779437 | Curr Opin Struct Biol | 2022 Aug |
| An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics. | Shaver AO, Garcia BM, Gouveia GJ, Morse AM, Liu Z, Asef CK, Borges RM, Leach FE 3rd, Andersen EC, Amster IJ, Fernández FM, Edison AS, McIntyre LM | Frontiers in molecular biosciences | 36438654 | Front Mol Biosci | 2022 |
| GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease. | McIntyre LM, Huertas F, Morse AM, Kaletsky R, Murphy CT, Kalia V, Miller GW, Moskalenko O, Conesa A, Mor DE | Scientific reports | 35228596 | Sci Rep | 2022 Feb 28 |
| Molecular Gas-Phase Conformational Ensembles. | Das S, Merz KM Jr | Journal of chemical information and modeling | 38206321 | J Chem Inf Model | 2024 Feb 12 |
| Practical Guidelines for (13)C-Based NMR Metabolomics. | Edison AS, Le Guennec A, Delaglio F, Kupče Ē | Methods in molecular biology (Clifton, N.J.) | 31463840 | Methods Mol Biol | 2019 |
| Combinatorial Assembly of Modular Glucosides via Carboxylesterases Regulates C. elegans Starvation Survival. | Wrobel CJJ, Yu J, Rodrigues PR, Ludewig AH, Curtis BJ, Cohen SM, Fox BW, O'Donnell MP, Sternberg PW, Schroeder FC | Journal of the American Chemical Society | 34460264 | J Am Chem Soc | 2021 Sep 15 |
| Comparison of High-Resolution Fourier Transform Mass Spectrometry Platforms for Putative Metabolite Annotation. | Huang D, Bouza M, Gaul DA, Leach FE 3rd, Amster IJ, Schroeder FC, Edison AS, Fernández FM | Analytical chemistry | 34460220 | Anal Chem | 2021 Sep 14 |
| Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. | Alseekh S, Aharoni A, Brotman Y, Contrepois K, D'Auria J, Ewald J, C Ewald J, Fraser PD, Giavalisco P, Hall RD, Heinemann M, Link H, Luo J, Neumann S, Nielsen J, Perez de Souza L, Saito K, Sauer U, Schroeder FC, Schuster S, Siuzdak G, Skirycz A, Sumner LW, Snyder MP, Tang H, Tohge T, Wang Y, Wen W, Wu S, Xu G, Zamboni N, Fernie AR | Nature methods | 34239102 | Nat Methods | 2021 Jul |
| Sub-nanoliter metabolomics via mass spectrometry to characterize volume-limited samples. | Li Y, Bouza M, Wu C, Guo H, Huang D, Doron G, Temenoff JS, Stecenko AA, Wang ZL, Fernández FM | Nature communications | 33159052 | Nat Commun | 2020 Nov 6 |
| Triboelectric Nanogenerator Ion Mobility-Mass Spectrometry for In-Depth Lipid Annotation. | Bouza M, Li Y, Wang AC, Wang ZL, Fernández FM | Analytical chemistry | 33720699 | Anal Chem | 2021 Apr 6 |
| Role of UDP-Glycosyltransferase (ugt) Genes in Detoxification and Glycosylation of 1-Hydroxyphenazine (1-HP) in Caenorhabditis elegans. | Asif MZ, Nocilla KA, Ngo L, Shah M, Smadi Y, Hafeez Z, Parnes M, Manson A, Glushka JN, Leach FE 3rd, Edison AS | Chemical research in toxicology | 38488606 | Chem Res Toxicol | 2024 Apr 15 |
| In Silico Characterization of Glycan Ions from IM-MS Collision Cross Section. | Keng M, Merz KM Jr | Journal of the American Society for Mass Spectrometry | 39928852 | J Am Soc Mass Spectrom | 2025 Mar 5 |
| Culture and Assay of Large-Scale Mixed-Stage Caenorhabditis elegans Populations. | Shaver AO, Gouveia GJ, Kirby PS, Andersen EC, Edison AS | Journal of visualized experiments : JoVE | 34028439 | J Vis Exp | 2021 May 5 |
| International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis. | Thompson JW, Adams KJ, Adamski J, Asad Y, Borts D, Bowden JA, Byram G, Dang V, Dunn WB, Fernandez F, Fiehn O, Gaul DA, Hühmer AF, Kalli A, Koal T, Koeniger S, Mandal R, Meier F, Naser FJ, O'Neil D, Pal A, Patti GJ, Pham-Tuan H, Prehn C, Raynaud FI, Shen T, Southam AD, St John-Williams L, Sulek K, Vasilopoulou CG, Viant M, Winder CL, Wishart D, Zhang L, Zheng J, Moseley MA | Analytical chemistry | 31638379 | Anal Chem | 2019 Nov 19 |
| In Silico Collision Cross Section Calculations to Aid Metabolite Annotation. | Das S, Tanemura KA, Dinpazhoh L, Keng M, Schumm C, Leahy L, Asef CK, Rainey M, Edison AS, Fernández FM, Merz KM Jr | Journal of the American Society for Mass Spectrometry | 35378036 | J Am Soc Mass Spectrom | 2022 May 4 |
| NMR and Metabolomics-A Roadmap for the Future. | Wishart DS, Cheng LL, Copié V, Edison AS, Eghbalnia HR, Hoch JC, Gouveia GJ, Pathmasiri W, Powers R, Schock TB, Sumner LW, Uchimiya M | Metabolites | 35893244 | Metabolites | 2022 Jul 23 |
| Sex-specificity of the C. elegans metabolome. | Burkhardt RN, Artyukhin AB, Aprison EZ, Curtis BJ, Fox BW, Ludewig AH, Palomino DF, Luo J, Chaturbedi A, Panda O, Wrobel CJJ, Baumann V, Portman DS, Lee SS, Ruvinsky I, Schroeder FC | Nature communications | 36658169 | Nat Commun | 2023 Jan 19 |
| CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics. | Rainey MA, Watson CA, Asef CK, Foster MR, Baker ES, Fernández FM | Analytical chemistry | 36473057 | Anal Chem | 2022 Dec 20 |
| Eliminating the Deadwood: A Machine Learning Model for CCS Knowledge-Based Conformational Focusing for Lipids. | Keng M, Merz KM Jr | Journal of chemical information and modeling | 39378407 | J Chem Inf Model | 2024 Oct 28 |
| Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurvivors. | Evans CR, Karnovsky A, Puskarich MA, Michailidis G, Jones AE, Stringer KA | Journal of proteome research | 30895797 | J Proteome Res | 2019 May 3 |
| Modifying Chromatography Conditions for Improved Unknown Feature Identification in Untargeted Metabolomics. | Anderson BG, Raskind A, Habra H, Kennedy RT, Evans CR | Analytical chemistry | 34794310 | Anal Chem | 2021 Dec 7 |
| metabCombiner: Paired Untargeted LC-HRMS Metabolomics Feature Matching and Concatenation of Disparately Acquired Data Sets. | Habra H, Kachman M, Bullock K, Clish C, Evans CR, Karnovsky A | Analytical chemistry | 33724799 | Anal Chem | 2021 Mar 30 |
| The unknown lipids project: harmonized methods improve compound identification and data reproducibility in an inter-laboratory untargeted lipidomics study. | Shen T, Conway C, Rempfert KR, Kyle JE, Colby SM, Gaul DA, Habra H, Kong F, Bloodsworth KJ, Allen D, Evans BS, Du X, Fernandez FM, Metz TO, Fiehn O, Evans CR | bioRxiv : the preprint server for biology | 36778509 | bioRxiv | 2023 Feb 3 |
| Offline Two-Dimensional Liquid Chromatography-Mass Spectrometry for Deep Annotation of the Fecal Metabolome Following Fecal Microbiota Transplantation. | Anderson BG, Raskind A, Hissong R, Dougherty MK, McGill SK, Gulati AS, Theriot CM, Kennedy RT, Evans CR | Journal of proteome research | 38752739 | J Proteome Res | 2024 Jun 7 |
| In-Depth Chemical Analysis of the Brain Extracellular Space Using In Vivo Microdialysis with Liquid Chromatography-Tandem Mass Spectrometry. | Anderson BG, Popov P, Cicali AR, Nwamba A, Evans CR, Kennedy RT | Analytical chemistry | 39360623 | Anal Chem | 2024 Oct 15 |
| Crystal-C: A Computational Tool for Refinement of Open Search Results. | Chang HY, Kong AT, da Veiga Leprevost F, Avtonomov DM, Haynes SE, Nesvizhskii AI | Journal of proteome research | 32338005 | J Proteome Res | 2020 Jun 5 |
| Implementing the MSFragger Search Engine as a Node in Proteome Discoverer. | Chang HY, Haynes SE, Yu F, Nesvizhskii AI | Journal of proteome research | 36475762 | J Proteome Res | 2023 Feb 3 |
| Compound Identification Strategies in Mass Spectrometry-Based Metabolomics and Pharmacometabolomics. | Hissong R, Evans KR, Evans CR | Handbook of experimental pharmacology | 36409330 | Handb Exp Pharmacol | 2023 |
| The metabolome: A key measure for exposome research in epidemiology. | Walker DI, Valvi D, Rothman N, Lan Q, Miller GW, Jones DP | Current epidemiology reports | 31828002 | Curr Epidemiol Rep | 2019 |
| Associations of Benzo(ghi)perylene and Heptachlorodibenzo-p-dioxin in Serum of Service Personnel Deployed to Balad, Iraq, and Bagram, Afghanistan Correlates With Perturbed Amino Acid Metabolism in Human Lung Fibroblasts. | Smith MR, Woeller CF, Uppal K, Thatcher TH, Walker DI, Hopke PK, Rohrbeck P, Mallon TM, Krahl PL, Utell MJ, Go YM, Jones DP | Journal of occupational and environmental medicine | 31800449 | J Occup Environ Med | 2019 Dec |
| The exposome and health: Where chemistry meets biology. | Vermeulen R, Schymanski EL, Barabási AL, Miller GW | Science (New York, N.Y.) | 31974245 | Science | 2020 Jan 24 |
| Integrating the exposome into a multi-omic research framework. | Miller GW | Exposome | 37538530 | Exposome | 2021 |
| Differences in plasma metabolites related to Alzheimer's disease, APOE ε4 status, and ethnicity. | Vardarajan B, Kalia V, Manly J, Brickman A, Reyes-Dumeyer D, Lantigua R, Ionita-Laza I, Jones DP, Miller GW, Mayeux R | Alzheimer's & dementia (New York, N. Y.) | 32377558 | Alzheimers Dement (N Y) | 2020 |
| Microbial metabolite delta-valerobetaine is a diet-dependent obesogen. | Liu KH, Owens JA, Saeedi B, Cohen CE, Bellissimo MP, Naudin C, Darby T, Druzak S, Maner-Smith K, Orr M, Hu X, Fernandes J, Camacho MC, Hunter-Chang S, VanInsberghe D, Ma C, Ganesh T, Yeligar SM, Uppal K, Go YM, Alvarez JA, Vos MB, Ziegler TR, Woodworth MH, Kraft CS, Jones RM, Ortlund E, Neish AS, Jones DP | Nature metabolism | 34931082 | Nat Metab | 2021 Dec |
| Metformin rescues Parkinson's disease phenotypes caused by hyperactive mitochondria. | Mor DE, Sohrabi S, Kaletsky R, Keyes W, Tartici A, Kalia V, Miller GW, Murphy CT | Proceedings of the National Academy of Sciences of the United States of America | 33024014 | Proc Natl Acad Sci U S A | 2020 Oct 20 |
| Arginine and Carnitine Metabolites Are Altered in Diabetic Retinopathy. | Sumarriva K, Uppal K, Ma C, Herren DJ, Wang Y, Chocron IM, Warden C, Mitchell SL, Burgess LG, Goodale MP, Osborn MP, Ferreira AJ, Law JC, Cherney EF, Jones DP, Brantley MA Jr | Investigative ophthalmology & visual science | 31323682 | Invest Ophthalmol Vis Sci | 2019 Jul 1 |
| The Exposome and Toxicology: A Win-Win Collaboration. | Barouki R, Audouze K, Becker C, Blaha L, Coumoul X, Karakitsios S, Klanova J, Miller GW, Price EJ, Sarigiannis D | Toxicological sciences : an official journal of the Society of Toxicology | 34878125 | Toxicol Sci | 2022 Feb 28 |
| Large scale enzyme based xenobiotic identification for exposomics. | Liu KH, Lee CM, Singer G, Bais P, Castellanos F, Woodworth MH, Ziegler TR, Kraft CS, Miller GW, Li S, Go YM, Morgan ET, Jones DP | Nature communications | 34521839 | Nat Commun | 2021 Sep 14 |
| Metabolome Wide Association Study of serum DDT and DDE in Pregnancy and Early Postpartum. | Hu X, Li S, Cirillo P, Krigbaum N, Tran V, Ishikawa T, La Merrill MA, Jones DP, Cohn B | Reproductive toxicology (Elmsford, N.Y.) | 31102720 | Reprod Toxicol | 2020 Mar |
| Network-Based Approaches for Multi-omics Integration. | Zhou G, Li S, Xia J | Methods in molecular biology (Clifton, N.J.) | 31953831 | Methods Mol Biol | 2020 |
| Reference Standardization for Quantification and Harmonization of Large-Scale Metabolomics. | Liu KH, Nellis M, Uppal K, Ma C, Tran V, Liang Y, Walker DI, Jones DP | Analytical chemistry | 32490663 | Anal Chem | 2020 Jul 7 |
| Environmental chemical burden in metabolic tissues and systemic biological pathways in adolescent bariatric surgery patients: A pilot untargeted metabolomic approach. | Valvi D, Walker DI, Inge T, Bartell SM, Jenkins T, Helmrath M, Ziegler TR, La Merrill MA, Eckel SP, Conti D, Liang Y, Jones DP, McConnell R, Chatzi L | Environment international | 32683211 | Environ Int | 2020 Oct |
| Omics Integration for Mitochondria Systems Biology. | Hu X, Go YM, Jones DP | Antioxidants & redox signaling | 31891667 | Antioxid Redox Signal | 2020 Apr 20 |
| Metabolomics as a Truly Translational Tool for Precision Medicine. | Schmidt JC, Dougherty BV, Beger RD, Jones DP, Schmidt MA, Mattes WB | International journal of toxicology | 34514887 | Int J Toxicol | 2021 Oct |
| Air pollution and decreased bone mineral density among Women's Health Initiative participants. | Prada D, Crandall CJ, Kupsco A, Kioumourtzoglou MA, Stewart JD, Liao D, Yanosky JD, Ramirez A, Wactawski-Wende J, Shen Y, Miller G, Ionita-Laza I, Whitsel EA, Baccarelli AA | EClinicalMedicine | 36820096 | EClinicalMedicine | 2023 Mar |
| Metabolic Signatures of Youth Exposure to Mixtures of Per- and Polyfluoroalkyl Substances: A Multi-Cohort Study. | Goodrich JA, Walker DI, He J, Lin X, Baumert BO, Hu X, Alderete TL, Chen Z, Valvi D, Fuentes ZC, Rock S, Wang H, Berhane K, Gilliland FD, Goran MI, Jones DP, Conti DV, Chatzi L | Environmental health perspectives | 36821578 | Environ Health Perspect | 2023 Feb |
| Plasma concentrations of lipophilic persistent organic pollutants and glucose homeostasis in youth populations. | Baumert BO, Goodrich JA, Hu X, Walker DI, Alderete TL, Chen Z, Valvi D, Rock S, Berhane K, Gilliland FD, Goran MI, Jones DP, Conti DV, Chatzi L | Environmental research | 35447156 | Environ Res | 2022 Sep |
| High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. | Lai Y, Koelmel JP, Walker DI, Price EJ, Papazian S, Manz KE, Castilla-Fernández D, Bowden JA, Nikiforov V, David A, Bessonneau V, Amer B, Seethapathy S, Hu X, Lin EZ, Jbebli A, McNeil BR, Barupal D, Cerasa M, Xie H, Kalia V, Nandakumar R, Singh R, Tian Z, Gao P, Zhao Y, Froment J, Rostkowski P, Dubey S, Coufalíková K, Seličová H, Hecht H, Liu S, Udhani HH, Restituito S, Tchou-Wong KM, Lu K, Martin JW, Warth B, Godri Pollitt KJ, Klánová J, Fiehn O, Metz TO, Pennell KD, Jones DP, Miller GW | Environmental science & technology | 38984754 | Environ Sci Technol | 2024 Jul 23 |
| Exposure to perfluoroalkyl substances and longitudinal changes in bone mineral density in adolescents and young adults: A multi-cohort study. | Beglarian E, Costello E, Walker DI, Wang H, Alderete TL, Chen Z, Valvi D, Baumert BO, Rock S, Rubbo B, Aung MT, Gilliland FD, Goran MI, Jones DP, McConnell R, Eckel SP, Conti DV, Goodrich JA, Chatzi L | Environmental research | 38061983 | Environ Res | 2024 Mar 1 |
| Associations of dietary intake and longitudinal measures of per- and polyfluoroalkyl substances (PFAS) in predominantly Hispanic young Adults: A multicohort study. | Hampson HE, Costello E, Walker DI, Wang H, Baumert BO, Valvi D, Rock S, Jones DP, Goran MI, Gilliland FD, Conti DV, Alderete TL, Chen Z, Chatzi L, Goodrich JA | Environment international | 38316574 | Environ Int | 2024 Mar |
| A Bioinformatics Primer to Data Science, with Examples for Metabolomics. | Pittard WS, Villaveces CK, Li S | Methods in molecular biology (Clifton, N.J.) | 31953822 | Methods Mol Biol | 2020 |
| The Essential Toolbox of Data Science: Python, R, Git, and Docker. | Pittard WS, Li S | Methods in molecular biology (Clifton, N.J.) | 31953823 | Methods Mol Biol | 2020 |
| Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology. | Sies H, Belousov VV, Chandel NS, Davies MJ, Jones DP, Mann GE, Murphy MP, Yamamoto M, Winterbourn C | Nature reviews. Molecular cell biology | 35190722 | Nat Rev Mol Cell Biol | 2022 Jul |
| High-Throughput Production of Diverse Xenobiotic Metabolites with Cytochrome P450-Transduced Huh7 Hepatoma Cell Lines. | Lee CM, Liu KH, Singer G, Miller GW, Li S, Jones DP, Morgan ET | Drug metabolism and disposition: the biological fate of chemicals | 35752443 | Drug Metab Dispos | 2022 Sep |
| The exposome and liver disease - how environmental factors affect liver health. | Barouki R, Samson M, Blanc EB, Colombo M, Zucman-Rossi J, Lazaridis KN, Miller GW, Coumoul X | Journal of hepatology | 36889360 | J Hepatol | 2023 Aug |
| Cruciferous vegetables (Brassica oleracea) confer cytoprotective effects in Drosophila intestines. | Lyles JT, Luo L, Liu K, Jones DP, Jones RM, Quave CL | Gut microbes | 33966605 | Gut Microbes | 2021 Jan-Dec |
| Utilizing a Biology-Driven Approach to Map the Exposome in Health and Disease: An Essential Investment to Drive the Next Generation of Environmental Discovery. | Chung MK, Rappaport SM, Wheelock CE, Nguyen VK, van der Meer TP, Miller GW, Vermeulen R, Patel CJ | Environmental health perspectives | 34435882 | Environ Health Perspect | 2021 Aug |
| Metabolome-wide association study of flavorant vanillin exposure in bronchial epithelial cells reveals disease-related perturbations in metabolism. | Smith MR, Jarrell ZR, Orr M, Liu KH, Go YM, Jones DP | Environment international | 33360165 | Environ Int | 2021 Feb |
| Phytochelatin database: a resource for phytochelatin complexes of nutritional and environmental metals. | Dennis KK, Uppal K, Liu KH, Ma C, Liang B, Go YM, Jones DP | Database : the journal of biological databases and curation | 31267134 | Database (Oxford) | 2019 Jan 1 |
| Postprandial Metabolite Profiles and Risk of Prediabetes in Young People: A Longitudinal Multicohort Study. | Goodrich JA, Wang H, Walker DI, Lin X, Hu X, Alderete TL, Chen Z, Valvi D, Baumert BO, Rock S, Berhane K, Gilliland FD, Goran MI, Jones DP, Conti DV, Chatzi L | Diabetes care | 37971952 | Diabetes Care | 2024 Jan 1 |
| Mammalian hydroxylation of microbiome-derived obesogen, delta-valerobetaine, to homocarnitine, a 5-carbon carnitine analog. | Weinberg J, Liu KH, Lee CM, Crandall WJ, Cuevas AR, Druzak SA, Morgan ET, Jarrell ZR, Ortlund EA, Martin GS, Singer G, Strobel FH, Go YM, Jones DP | The Journal of biological chemistry | 39675709 | J Biol Chem | 2025 Jan |
| Metabolome Wide Association Study of Serum Poly and Perfluoroalkyl Substances (PFASs) in Pregnancy and Early Postpartum. | Hu X, Li S, Cirillo PM, Krigbaum NY, Tran V, Jones DP, Cohn BA | Reproductive toxicology (Elmsford, N.Y.) | 31121237 | Reprod Toxicol | 2019 Aug |
| Understanding mixed environmental exposures using metabolomics via a hierarchical community network model in a cohort of California women in 1960's. | Li S, Cirillo P, Hu X, Tran V, Krigbaum N, Yu S, Jones DP, Cohn B | Reproductive toxicology (Elmsford, N.Y.) | 31299210 | Reprod Toxicol | 2020 Mar |
| Macronutrient, Energy, and Bile Acid Metabolism Pathways Altered Following a Physiological Meal Challenge, Relative to Fasting, among Guatemalan Adults. | Yu EA, Yu T, Jones DP, Martorell R, Ramirez-Zea M, Stein AD | The Journal of nutrition | 32597983 | J Nutr | 2020 Aug 1 |
| Metabolomic Profiling After a Meal Shows Greater Changes and Lower Metabolic Flexibility in Cardiometabolic Diseases. | Yu EA, Yu T, Jones DP, Ramirez-Zea M, Stein AD | Journal of the Endocrine Society | 33134764 | J Endocr Soc | 2020 Nov 1 |
| Distribution of phytochelatins, metal-binding compounds, in plant foods: A survey of commonly consumed fruits, vegetables, grains and legumes. | Dennis KK, Liu KH, Uppal K, Go YM, Jones DP | Food chemistry | 32950899 | Food Chem | 2021 Mar 1 |
| Environmental chemicals and metabolic disruption in primary and secondary human parathyroid tumors. | Hu X, Saunders N, Safley S, Smith MR, Liang Y, Tran V, Sharma J, Jones DP, Weber CJ | Surgery | 32771296 | Surgery | 2021 Jan |
| A vision for exposome epidemiology: The pregnancy exposome in relation to breast cancer in the Child Health and Development Studies. | Jones DP, Cohn BA | Reproductive toxicology (Elmsford, N.Y.) | 32197999 | Reprod Toxicol | 2020 Mar |
| Exposome: a new field, a new journal. | Miller GW | Exposome | 37538531 | Exposome | 2021 |
| A scalable workflow to characterize the human exposome. | Hu X, Walker DI, Liang Y, Smith MR, Orr ML, Juran BD, Ma C, Uppal K, Koval M, Martin GS, Neujahr DC, Marsit CJ, Go YM, Pennell KD, Miller GW, Lazaridis KN, Jones DP | Nature communications | 34552080 | Nat Commun | 2021 Sep 22 |
| Effect of altered production and storage of dopamine on development and behavior in C. elegans. | Lee I, Knickerbocker AC, Depew CR, Martin E, Dicent J, Miller GW, Bucher ML | bioRxiv : the preprint server for biology | 37873331 | bioRxiv | 2023 Oct 10 |
| Effect of altered production and storage of dopamine on development and behavior in C. elegans. | Lee I, Knickerbocker AC, Depew CR, Martin EL, Dicent J, Miller GW, Bucher ML | Frontiers in toxicology | 39219718 | Front Toxicol | 2024 |
| Seminar: Functional Exposomics and Mechanisms of Toxicity-Insights from Model Systems and NAMs. | Lai Y, Ay M, Hospital CD, Miller GW, Sarkar S | Environmental health perspectives | 39230330 | Environ Health Perspect | 2024 Sep |
| Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats. | Barupal DK, Pinkerton KE, Hood C, Kind T, Fiehn O | Chemical research in toxicology | 27788581 | Chem Res Toxicol | 2016 Nov 21 |
| Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. | Barupal DK, Fiehn O | Environmental health perspectives | 31557052 | Environ Health Perspect | 2019 Sep |
| Sugar Alcohols Have a Key Role in Pathogenesis of Chronic Liver Disease and Hepatocellular Carcinoma in Whole Blood and Liver Tissues. | Ismail IT, Fiehn O, Elfert A, Helal M, Salama I, El-Said H | Cancers | 32092943 | Cancers (Basel) | 2020 Feb 19 |
| 17-α estradiol ameliorates age-associated sarcopenia and improves late-life physical function in male mice but not in females or castrated males. | Garratt M, Leander D, Pifer K, Bower B, Herrera JJ, Day SM, Fiehn O, Brooks SV, Miller RA | Aging cell | 30740872 | Aging Cell | 2019 Apr |
| A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium. | Barupal DK, Zhang Y, Shen T, Fan S, Roberts BS, Fitzgerald P, Wancewicz B, Valdiviez L, Wohlgemuth G, Byram G, Choy YY, Haffner B, Showalter MR, Vaniya A, Bloszies CS, Folz JS, Kind T, Flenniken AM, McKerlie C, Nutter LMJ, Lloyd KC, Fiehn O | Metabolites | 31121816 | Metabolites | 2019 May 22 |
| Author Correction: Structure of human GABA(B) receptor in an inactive state. | Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR | Nature | 32665714 | Nature | 2020 Jul |
| Quantum Chemical Prediction of Electron Ionization Mass Spectra of Trimethylsilylated Metabolites. | Wang S, Kind T, Bremer PL, Tantillo DJ, Fiehn O | Analytical chemistry | 35006668 | Anal Chem | 2022 Jan 25 |
| Acyl-CoA Identification in Mouse Liver Samples Using the In Silico CoA-Blast Tandem Mass Spectral Library. | Keshet U, Kind T, Lu X, Devi S, Fiehn O | Analytical chemistry | 35119811 | Anal Chem | 2022 Feb 15 |
| Sexual Dimorphism of the Mouse Plasma Metabolome Is Associated with Phenotypes of 30 Gene Knockout Lines. | Zhang Y, Barupal DK, Fan S, Gao B, Zhu C, Flenniken AM, McKerlie C, Nutter LMJ, Lloyd KCK, Fiehn O | Metabolites | 37623890 | Metabolites | 2023 Aug 15 |
| Automatic Assignment of Molecular Ion Species to Elemental Formulas in Gas Chromatography/Methane Chemical Ionization Accurate Mass Spectrometry. | Wang S, Valdiviez L, Ye H, Fiehn O | Metabolites | 37623905 | Metabolites | 2023 Aug 19 |
| Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment. | Aboud O, Liu Y, Dahabiyeh L, Abuaisheh A, Li F, Aboubechara JP, Riess J, Bloch O, Hodeify R, Tagkopoulos I, Fiehn O | Biomedicines | 37626757 | Biomedicines | 2023 Aug 13 |
| Assessing the impact of boldine on the gastrocnemius using multiomics profiling at 7 and 28 days post-complete spinal cord injury in young male mice. | Potter LA, Toro CA, Harlow L, Lavin KM, Cardozo CP, Wende AR, Graham ZA | Physiological genomics | 37125768 | Physiol Genomics | 2023 Jul 1 |
| A metabolome atlas of the aging mouse brain. | Ding J, Ji J, Rabow Z, Shen T, Folz J, Brydges CR, Fan S, Lu X, Mehta S, Showalter MR, Zhang Y, Araiza R, Bower LR, Lloyd KCK, Fiehn O | Nature communications | 34654818 | Nat Commun | 2021 Oct 15 |
| Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics. | Bonini P, Kind T, Tsugawa H, Barupal DK, Fiehn O | Analytical chemistry | 32390414 | Anal Chem | 2020 Jun 2 |
| Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification. | Li Y, Kind T, Folz J, Vaniya A, Mehta SS, Fiehn O | Nature methods | 34857935 | Nat Methods | 2021 Dec |
| Plasma lipidomics profile in pregnancy and gestational diabetes risk: a prospective study in a multiracial/ethnic cohort. | Rahman ML, Feng YA, Fiehn O, Albert PS, Tsai MY, Zhu Y, Wang X, Tekola-Ayele F, Liang L, Zhang C | BMJ open diabetes research & care | 33674279 | BMJ Open Diabetes Res Care | 2021 Mar |
| Leucoselect Phytosome Modulates Serum Eicosapentaenoic Acid, Docosahexaenoic Acid, and Prostaglandin E3 in a Phase I Lung Cancer Chemoprevention Study. | Mao JT, Xue B, Fan S, Neis P, Qualls C, Massie L, Fiehn O | Cancer prevention research (Philadelphia, Pa.) | 33707173 | Cancer Prev Res (Phila) | 2021 Jun |
| Glutathione deficiency decreases lipid droplet stores and increases reactive oxygen species in mouse oocytes†. | Malott KF, Reshel S, Ortiz L, Luderer U | Biology of reproduction | 35238901 | Biol Reprod | 2022 Jun 13 |
| Methods to capture proteomic and metabolomic signatures from cerebrospinal fluid and serum of healthy individuals. | Lilley LM, Sanche S, Moore SC, Salemi MR, Vu D, Iyer S, Hengartner NW, Mukundan H | Scientific reports | 35922450 | Sci Rep | 2022 Aug 3 |
| Plasma Metabolite Response to Simple, Refined and Unrefined Carbohydrate-Enriched Diets in Older Adults-Randomized Controlled Crossover Trial. | Huang NK, Matthan NR, Matuszek G, Lichtenstein AH | Metabolites | 35736480 | Metabolites | 2022 Jun 15 |
| Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicago spp. Revealed by Metabolomic and Gene Expression Profiles. | Gifford I, Battenberg K, Vaniya A, Wilson A, Tian L, Fiehn O, Berry AM | Frontiers in plant science | 30364174 | Front Plant Sci | 2018 |
| Effects of Lean Pork on Microbiota and Microbial-Metabolite Trimethylamine-N-Oxide: A Randomized Controlled Non-Inferiority Feeding Trial Based on the Dietary Guidelines for Americans. | Dhakal S, Moazzami Z, Perry C, Dey M | Molecular nutrition & food research | 35182101 | Mol Nutr Food Res | 2022 May |
| Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids. | DeFelice BC, Fiehn O | Talanta | 30683386 | Talanta | 2019 May 1 |
| The Emerging and Diverse Roles of Bis(monoacylglycero) Phosphate Lipids in Cellular Physiology and Disease. | Showalter MR, Berg AL, Nagourney A, Heil H, Carraway KL 3rd, Fiehn O | International journal of molecular sciences | 33137979 | Int J Mol Sci | 2020 Oct 29 |
| Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and Antiviral Responses in Aedes albopictus. | Onyango MG, Attardo GM, Kelly ET, Bialosuknia SM, Stout J, Banker E, Kuo L, Ciota AT, Kramer LD | Frontiers in microbiology | 33133033 | Front Microbiol | 2020 |
| Preclinical translation of exosomes derived from mesenchymal stem/stromal cells. | Elahi FM, Farwell DG, Nolta JA, Anderson JD | Stem cells (Dayton, Ohio) | 31381842 | Stem Cells | 2020 Jan |
| Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology. | Barupal DK, Baillie R, Fan S, Saykin AJ, Meikle PJ, Arnold M, Nho K, Fiehn O, Kaddurah-Daouk R, Alzheimer Disease Metabolomics Consortium | Alzheimer's & dementia (Amsterdam, Netherlands) | 31517024 | Alzheimers Dement (Amst) | 2019 Dec |
| How Well Can We Predict Mass Spectra from Structures? Benchmarking Competitive Fragmentation Modeling for Metabolite Identification on Untrained Tandem Mass Spectra. | Bremer PL, Vaniya A, Kind T, Wang S, Fiehn O | Journal of chemical information and modeling | 36043939 | J Chem Inf Model | 2022 Sep 12 |
| Resistant starch type-4 intake alters circulating bile acids in human subjects. | Dhakal S, Dey M | Frontiers in nutrition | 36337613 | Front Nutr | 2022 |
| Application of Machine Learning to Metabolomic Profile Characterization in Glioblastoma Patients Undergoing Concurrent Chemoradiation. | Aboud O, Liu YA, Fiehn O, Brydges C, Fragoso R, Lee HS, Riess J, Hodeify R, Bloch O | Metabolites | 36837918 | Metabolites | 2023 Feb 17 |
| Comparison of Plasma Metabolome Response to Diets Enriched in Soybean and Partially-Hydrogenated Soybean Oil in Moderately Hypercholesterolemic Adults-A Pilot Study. | Huang NK, Lichtenstein AH, Matuszek G, Matthan NR | Metabolites | 37110133 | Metabolites | 2023 Mar 26 |
| Plasma Metabolite Profiles Following Consumption of Animal Protein and Soybean-Based Diet in Hypercholesterolemic Postmenopausal Women. | Huang NK, Matthan NR, Matuszek G, Lichtenstein AH | Metabolites | 35323651 | Metabolites | 2022 Feb 25 |
| Cellular transformation promotes the incorporation of docosahexaenoic acid into the endolysosome-specific lipid bis(monoacylglycerol)phosphate in breast cancer. | Berg AL, Showalter MR, Kosaisawe N, Hu M, Stephens NC, Sa M, Heil H, Castro N, Chen JJ, VanderVorst K, Wheeler MR, Rabow Z, Cajka T, Albeck J, Fiehn O, Carraway KL 3rd | Cancer letters | 36773796 | Cancer Lett | 2023 Mar 31 |
| Beyond the Ground State: Predicting Electron Ionization Mass Spectra Using Excited-State Molecular Dynamics. | Wang S, Kind T, Bremer PL, Tantillo DJ, Fiehn O | Journal of chemical information and modeling | 36107950 | J Chem Inf Model | 2022 Sep 26 |
| Denoising Autoencoder Normalization for Large-Scale Untargeted Metabolomics by Gas Chromatography-Mass Spectrometry. | Zhang Y, Fan S, Wohlgemuth G, Fiehn O | Metabolites | 37623887 | Metabolites | 2023 Aug 13 |
| Allele-specific dysregulation of lipid and energy metabolism in early-stage hypertrophic cardiomyopathy. | Vaniya A, Karlstaedt A, Gulkok D, Thottakara T, Liu Y, Fan S, Eades H, Vakrou S, Fukunaga R, Vernon HJ, Fiehn O, Roselle Abraham M | Journal of molecular and cellular cardiology plus | 39430912 | J Mol Cell Cardiol Plus | 2024 Jun |
| Resolving multi-image spatial lipidomic responses to inhaled toxicants by machine learning. | Stevens NC, Shen T, Martinez J, Evans VJB, Domanico MC, Neumann EK, Van Winkle LS, Fiehn O | Nature communications | 40140638 | Nat Commun | 2025 Mar 26 |
| Utilizing cooled liquid chromatography and chemical derivatization to separate and quantify C3-epimers of 25-hydroxy vitamin D and low abundant 1α,25(OH)(2)D3: Application in a pediatric population. | DeFelice BC, Pedersen TL, Shorrosh H, Johnson RK, Seifert JA, Norris JM, Fiehn O | The Journal of steroid biochemistry and molecular biology | 31715316 | J Steroid Biochem Mol Biol | 2020 Mar |
| JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding. | DiTacchio KA, Kalinowska D, Saran AR, Byrne A, Vollmers C, DiTacchio L | Cell reports | 32460011 | Cell Rep | 2020 May 26 |
| Structure Annotation of All Mass Spectra in Untargeted Metabolomics. | Blaženović I, Kind T, Sa MR, Ji J, Vaniya A, Wancewicz B, Roberts BS, Torbašinović H, Lee T, Mehta SS, Showalter MR, Song H, Kwok J, Jahn D, Kim J, Fiehn O | Analytical chemistry | 30608141 | Anal Chem | 2019 Feb 5 |
| Serum and urinary metabolomics and outcomes in cirrhosis. | Bajaj JS, Fan S, Thacker LR, Fagan A, Gavis E, White MB, Heuman DM, Fuchs M, Fiehn O | PloS one | 31560724 | PLoS One | 2019 |
| In-Silico-Generated Library for Sensitive Detection of 2-Dimethylaminoethylamine Derivatized FAHFA Lipids Using High-Resolution Tandem Mass Spectrometry. | Ding J, Kind T, Zhu QF, Wang Y, Yan JW, Fiehn O, Feng YQ | Analytical chemistry | 32202765 | Anal Chem | 2020 Apr 21 |
| Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. | Barupal DK, Fan S, Fiehn O | Current opinion in biotechnology | 29413745 | Curr Opin Biotechnol | 2018 Dec |
| SS-31 does not prevent or reduce muscle atrophy 7 days after a 65 kdyne contusion spinal cord injury in young male mice. | Graham ZA, DeBerry JJ, Cardozo CP, Bamman MM | Physiological reports | 35611788 | Physiol Rep | 2022 May |
| Pharmacometabonomic association of cyclophosphamide 4-hydroxylation in hematopoietic cell transplant recipients. | McCune JS, Nakamura R, O'Meally D, Randolph TW, Sandmaier BM, Karolak A, Hockenbery D, Navarro SL | Clinical and translational science | 35106927 | Clin Transl Sci | 2022 May |
| Comprehensive metabolomic study of the response of HK-2 cells to hyperglycemic hypoxic diabetic-like milieu. | Valdés A, Lucio-Cazaña FJ, Castro-Puyana M, García-Pastor C, Fiehn O, Marina ML | Scientific reports | 33658594 | Sci Rep | 2021 Mar 3 |
| Exosomes in disease and regeneration: biological functions, diagnostics, and beneficial effects. | Lin Y, Anderson JD, Rahnama LMA, Gu SV, Knowlton AA | American journal of physiology. Heart and circulatory physiology | 32986962 | Am J Physiol Heart Circ Physiol | 2020 Dec 1 |
| Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Flight, and Quadrupole Mass Spectrometry. | Zhang Y, Gao B, Valdiviez L, Zhu C, Gallagher T, Whiteson K, Fiehn O | Analytical chemistry | 33434014 | Anal Chem | 2021 Feb 2 |
| Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation. | Showalter MR, Wancewicz B, Fiehn O, Archard JA, Clayton S, Wagner J, Deng P, Halmai J, Fink KD, Bauer G, Fury B, Perotti NH, Apperson M, Butters J, Belafsky P, Farwell G, Kuhn M, Nolta JA, Anderson JD | Biochemical and biophysical research communications | 30926165 | Biochem Biophys Res Commun | 2019 May 14 |
| The BinDiscover database: a biology-focused meta-analysis tool for 156,000 GC-TOF MS metabolome samples. | Bremer PL, Wohlgemuth G, Fiehn O | Journal of cheminformatics | 37475020 | J Cheminform | 2023 Jul 20 |
| Boldine Alters Serum Lipidomic Signatures after Acute Spinal Cord Transection in Male Mice. | Graham ZA, Siedlik JA, Toro CA, Harlow L, Cardozo CP | International journal of environmental research and public health | 37623175 | Int J Environ Res Public Health | 2023 Aug 17 |
| Impact of Protonation Sites on Collision-Induced Dissociation-MS/MS Using CIDMD Quantum Chemistry Modeling. | Lee J, Tantillo DJ, Wang LP, Fiehn O | Journal of chemical information and modeling | 39329341 | J Chem Inf Model | 2024 Oct 14 |
| Predicting Collision-Induced-Dissociation Tandem Mass Spectra (CID-MS/MS) Using Ab Initio Molecular Dynamics. | Lee J, Tantillo DJ, Wang LP, Fiehn O | Journal of chemical information and modeling | 39329407 | J Chem Inf Model | 2024 Oct 14 |
| Structure of human GABA(B) receptor in an inactive state. | Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR | Nature | 32581365 | Nature | 2020 Aug |
| Remodeling Lipids in the Transition from Chronic Liver Disease to Hepatocellular Carcinoma. | Ismail IT, Elfert A, Helal M, Salama I, El-Said H, Fiehn O | Cancers | 33396945 | Cancers (Basel) | 2020 Dec 30 |
| Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed by Neuropeptidomics Mass Spectrometry. | Hook V, Lietz CB, Podvin S, Cajka T, Fiehn O | Journal of the American Society for Mass Spectrometry | 29667161 | J Am Soc Mass Spectrom | 2018 May |
| Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion of 9 Cell-Cell Signaling Molecules from Sympathoadrenal Chromaffin Cells in the Presence of Lithium. | Hook V, Kind T, Podvin S, Palazoglu M, Tran C, Toneff T, Samra S, Lietz C, Fiehn O | ACS chemical neuroscience | 30698015 | ACS Chem Neurosci | 2019 Mar 20 |
| Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data. | Fan S, Kind T, Cajka T, Hazen SL, Tang WHW, Kaddurah-Daouk R, Irvin MR, Arnett DK, Barupal DK, Fiehn O | Analytical chemistry | 30758187 | Anal Chem | 2019 Mar 5 |
| Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics. | Ismail IT, Showalter MR, Fiehn O | Metabolites | 31640247 | Metabolites | 2019 Oct 21 |
| Predicting in silico electron ionization mass spectra using quantum chemistry. | Wang S, Kind T, Tantillo DJ, Fiehn O | Journal of cheminformatics | 33372633 | J Cheminform | 2020 Oct 20 |
| Lipidomics of cyclophosphamide 4-hydroxylation in patients receiving post-transplant cyclophosphamide. | Navarro SL, Zheng Z, Randolph TW, Nakamura R, Sandmaier BM, Hockenbery D, McCune JS | Clinical and translational science | 36088654 | Clin Transl Sci | 2022 Nov |
| Flash entropy search to query all mass spectral libraries in real time. | Li Y, Fiehn O | Nature methods | 37735567 | Nat Methods | 2023 Oct |
| Metabolomics of Lung Microdissections Reveals Region- and Sex-Specific Metabolic Effects of Acute Naphthalene Exposure in Mice. | Stevens NC, Edwards PC, Tran LM, Ding X, Van Winkle LS, Fiehn O | Toxicological sciences : an official journal of the Society of Toxicology | 34498071 | Toxicol Sci | 2021 Nov 24 |
| Evaluating the Accuracy of the QCEIMS Approach for Computational Prediction of Electron Ionization Mass Spectra of Purines and Pyrimidines. | Lee J, Kind T, Tantillo DJ, Wang LP, Fiehn O | Metabolites | 35050190 | Metabolites | 2022 Jan 12 |
| Differences in the Stool Metabolome between Vegans and Omnivores: Analyzing the NIST Stool Reference Material. | Cumeras R, Shen T, Valdiviez L, Tippins Z, Haffner BD, Fiehn O | Metabolites | 37623865 | Metabolites | 2023 Aug 7 |
| SMetaS: A Sample Metadata Standardizer for Metabolomics. | Bremer PL, Fiehn O | Metabolites | 37623884 | Metabolites | 2023 Aug 12 |
| LibGen: Generating High Quality Spectral Libraries of Natural Products for EAD-, UVPD-, and HCD-High Resolution Mass Spectrometers. | Kong F, Keshet U, Shen T, Rodriguez E, Fiehn O | Analytical chemistry | 37939222 | Anal Chem | 2023 Nov 21 |
| Denoising Search doubles the number of metabolite and exposome annotations in human plasma using an Orbitrap Astral mass spectrometer. | Kong F, Shen T, Li Y, Bashar A, Bird SS, Fiehn O | Research square | 39108483 | Res Sq | 2024 Jul 25 |
| Mouse models of NADK2 deficiency analyzed for metabolic and gene expression changes to elucidate pathophysiology. | Murray GC, Bais P, Hatton CL, Tadenev ALD, Hoffmann BR, Stodola TJ, Morelli KH, Pratt SL, Schroeder D, Doty R, Fiehn O, John SWM, Bult CJ, Cox GA, Burgess RW | Human molecular genetics | 35796562 | Hum Mol Genet | 2022 Nov 28 |
| Comprehensive isotopomer analysis of glutamate and aspartate in small tissue samples. | Cai F, Bezwada D, Cai L, Mahar R, Wu Z, Chang MC, Pachnis P, Yang C, Kelekar S, Gu W, Brooks B, Ko B, Vu HS, Mathews TP, Zacharias LG, Martin-Sandoval M, Do D, Oaxaca KC, Jin ES, Margulis V, Malloy CR, Merritt ME, DeBerardinis RJ | Cell metabolism | 37611583 | Cell Metab | 2023 Oct 3 |
| Metabolic abnormalities in the bone marrow cells of young offspring born to obese mothers. | Alina M, Phillips E, Alharithi Y, Kadam L, Coussens L, Kumar S | Research square | 38313293 | Res Sq | 2024 Jan 16 |
| Ex Vivo Hepatic Perfusion Through the Portal Vein in Mouse. | Giacalone AG, Merritt ME, Ragavan M | Journal of visualized experiments : JoVE | 35343950 | J Vis Exp | 2022 Mar 9 |
| Branched chain amino acids and carbohydrate restriction exacerbate ketogenesis and hepatic mitochondrial oxidative dysfunction during NAFLD. | Muyyarikkandy MS, McLeod M, Maguire M, Mahar R, Kattapuram N, Zhang C, Surugihalli C, Muralidaran V, Vavilikolanu K, Mathews CE, Merritt ME, Sunny NE | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 32918763 | FASEB J | 2020 Nov |
| Metabolic reprogramming by histone deacetylase inhibition preferentially targets NRF2-activated tumors. | Karagiannis D, Wu W, Li A, Hayashi M, Chen X, Yip M, Mangipudy V, Xu X, Sánchez-Rivera FJ, Soto-Feliciano YM, Ye J, Papagiannakopoulos T, Lu C | Cell reports | 38165806 | Cell Rep | 2024 Jan 23 |
| Matrix Linear Models for connecting metabolite composition to individual characteristics. | Farage G, Zhao C, Choi HY, Garrett TJ, Kechris K, Elam MB, Sen Ś | bioRxiv : the preprint server for biology | 38187579 | bioRxiv | 2023 Dec 20 |
| Targeted Bmal1 restoration in muscle prolongs lifespan with systemic health effects in aging model. | Gutierrez-Monreal MA, Wolff CA, Rijos EE, Viggars MR, Douglas CM, Pagala V, Peng J, Hunt LC, Ding H, Huo Z, Demontis F, Esser KA | JCI insight | 39352748 | JCI Insight | 2024 Oct 1 |
| Measuring NQO1 Bioactivation Using [(2)H(7)]Glucose. | Mahar R, Chang MC, Merritt ME | Cancers | 34439319 | Cancers (Basel) | 2021 Aug 19 |
| Lipogenesis mediated by OGR1 regulates metabolic adaptation to acid stress in cancer cells via autophagy. | Pillai S, Mahmud I, Mahar R, Griffith C, Langsen M, Nguyen J, Wojtkowiak JW, Swietach P, Gatenby RA, Bui MM, Merritt ME, McDonald P, Garrett TJ, Gillies RJ | Cell reports | 35545051 | Cell Rep | 2022 May 10 |
| Synergistic Effect of β-Lapachone and Aminooxyacetic Acid on Central Metabolism in Breast Cancer. | Chang MC, Mahar R, McLeod MA, Giacalone AG, Huang X, Boothman DA, Merritt ME | Nutrients | 35893874 | Nutrients | 2022 Jul 22 |
| Metabolomic Profiling of Asparagine Deprivation in Asparagine Synthetase Deficiency Patient-Derived Cells. | Chang MC, Staklinski SJ, Malut VR, Pierre GL, Kilberg MS, Merritt ME | Nutrients | 37111157 | Nutrients | 2023 Apr 18 |
| Murine Norovirus Interaction with Enterobacter cloacae Leads to Changes in Membrane Stability and Packaging of Lipid and Metabolite Vesicle Content. | Mosby CA, Edelmann MJ, Jones MK | Microbiology spectrum | 36943087 | Microbiol Spectr | 2023 Mar 21 |
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| 5-Formylcytosine does not change the global structure of DNA. | Hardwick JS, Ptchelkine D, El-Sagheer AH, Tear I, Singleton D, Phillips SEV, Lane AN, Brown T | Nature structural & molecular biology | 28504696 | Nat Struct Mol Biol | 2017 Jun |
| A Micro-Scale Analytical Method for Determining Glycogen Turnover by NMR and FTMS. | Scott TL, Zhu J, Cassel TA, Vicente-Muñoz S, Lin P, Higashi RM, Lane AN, Fan TW | Metabolites | 36005633 | Metabolites | 2022 Aug 18 |
| Rapid analysis of S-adenosylmethionine (SAM) and S-adenosylhomocysteine (SAH) isotopologues in stable isotope-resolved metabolomics (SIRM) using direct infusion nanoelectrospray ultra-high-resolution Fourier transform mass spectrometry (DI-nESI-UHR-FTMS). | Yang J, Fan TWM, Brandon JA, Lane AN, Higashi RM | Analytica chimica acta | 34556237 | Anal Chim Acta | 2021 Oct 9 |
| Multifocal Renal Cell Carcinomas With Somatic IDH2 Mutation: Report of a Previously Undescribed Neoplasm. | Merino MJ, Ricketts CJ, Moreno V, Yang Y, Fan TWM, Lane AN, Meltzer PS, Vocke CD, Crooks DR, Linehan WM | The American journal of surgical pathology | 33165095 | Am J Surg Pathol | 2021 Jan |
| Mutant IDH1 and thrombosis in gliomas. | Unruh D, Schwarze SR, Khoury L, Thomas C, Wu M, Chen L, Chen R, Liu Y, Schwartz MA, Amidei C, Kumthekar P, Benjamin CG, Song K, Dawson C, Rispoli JM, Fatterpekar G, Golfinos JG, Kondziolka D, Karajannis M, Pacione D, Zagzag D, McIntyre T, Snuderl M, Horbinski C | Acta neuropathologica | 27664011 | Acta Neuropathol | 2016 Dec |
| Preclinical models for interrogating drug action in human cancers using Stable Isotope Resolved Metabolomics (SIRM). | Lane AN, Higashi RM, Fan TW | Metabolomics : Official journal of the Metabolomic Society | 27489532 | Metabolomics | 2016 Jul |
| Stable Isotope Resolved Metabolomics Studies in Ex Vivo TIssue Slices. | Fan TW, Lane AN, Higashi RM | Bio-protocol | 27158639 | Bio Protoc | 2016 Feb 5 |
| Ketogenesis contributes to intestinal cell differentiation. | Wang Q, Zhou Y, Rychahou P, Fan TW, Lane AN, Weiss HL, Evers BM | Cell death and differentiation | 27935584 | Cell Death Differ | 2017 Mar |
| Perspectives and expectations in structural bioinformatics of metalloproteins. | Yao S, Flight RM, Rouchka EC, Moseley HN | Proteins | 28168746 | Proteins | 2017 May |
| Blockade of 6-phosphogluconate dehydrogenase generates CD8(+) effector T cells with enhanced anti-tumor function. | Daneshmandi S, Cassel T, Lin P, Higashi RM, Wulf GM, Boussiotis VA, Fan TW, Seth P | Cell reports | 33691103 | Cell Rep | 2021 Mar 9 |
| An Ion Chromatography-Ultrahigh-Resolution-MS(1)/Data-Independent High-Resolution MS(2) Method for Stable Isotope-Resolved Metabolomics Reconstruction of Central Metabolic Networks. | Sun Q, Fan TW, Lane AN, Higashi RM | Analytical chemistry | 33482055 | Anal Chem | 2021 Feb 9 |
| Quantitative profiling of carbonyl metabolites directly in crude biological extracts using chemoselective tagging and nanoESI-FTMS. | Deng P, Higashi RM, Lane AN, Bruntz RC, Sun RC, Ramakrishnam Raju MV, Nantz MH, Qi Z, Fan TW | The Analyst | 29192912 | Analyst | 2017 Dec 18 |
| Acute loss of iron-sulfur clusters results in metabolic reprogramming and generation of lipid droplets in mammalian cells. | Crooks DR, Maio N, Lane AN, Jarnik M, Higashi RM, Haller RG, Yang Y, Fan TW, Linehan WM, Rouault TA | The Journal of biological chemistry | 29523684 | J Biol Chem | 2018 May 25 |
| Inhibition of Anaplerotic Glutaminolysis Underlies Selenite Toxicity in Human Lung Cancer. | Bruntz RC, Belshoff AC, Zhang Y, Macedo JKA, Higashi RM, Lane AN, Fan TW | Proteomics | 31298457 | Proteomics | 2019 Nov |
| Improved segmented-scan spectral stitching for stable isotope resolved metabolomics (SIRM) by ultra-high-resolution Fourier transform mass spectrometry. | Kang WY, Thompson PT, El-Amouri SS, Fan TWM, Lane AN, Higashi RM | Analytica chimica acta | 31409459 | Anal Chim Acta | 2019 Nov 8 |
| Advances in gene ontology utilization improve statistical power of annotation enrichment. | Hinderer EW 3rd, Flight RM, Dubey R, MacLeod JN, Moseley HNB | PloS one | 31415589 | PLoS One | 2019 |
| Targeting lactate dehydrogenase--a inhibits tumorigenesis and tumor progression in mouse models of lung cancer and impacts tumor-initiating cells. | Xie H, Hanai J, Ren JG, Kats L, Burgess K, Bhargava P, Signoretti S, Billiard J, Duffy KJ, Grant A, Wang X, Lorkiewicz PK, Schatzman S, Bousamra M 2nd, Lane AN, Higashi RM, Fan TW, Pandolfi PP, Sukhatme VP, Seth P | Cell metabolism | 24726384 | Cell Metab | 2014 May 6 |
| Aberrant coordination geometries discovered in the most abundant metalloproteins. | Yao S, Flight RM, Rouchka EC, Moseley HN | Proteins | 28142195 | Proteins | 2017 May |
| New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis. | Mitchell JM, Flight RM, Wang QJ, Higashi RM, Fan TW, Lane AN, Moseley HNB | Metabolomics : Official journal of the Metabolomic Society | 30830442 | Metabolomics | 2018 Sep 17 |
| Exosomal lipids for classifying early and late stage non-small cell lung cancer. | Fan TWM, Zhang X, Wang C, Yang Y, Kang WY, Arnold S, Higashi RM, Liu J, Lane AN | Analytica chimica acta | 30292300 | Anal Chim Acta | 2018 Dec 11 |
| Metabolic Labeling of Cultured Mammalian Cells for Stable Isotope-Resolved Metabolomics: Practical Aspects of Tissue Culture and Sample Extraction. | Crooks DR, Fan TW, Linehan WM | Methods in molecular biology (Clifton, N.J.) | 30725447 | Methods Mol Biol | 2019 |
| JAK2-mutant hematopoietic cells display metabolic alterations that can be targeted to treat myeloproliferative neoplasms. | Rao TN, Hansen N, Hilfiker J, Rai S, Majewska JM, Leković D, Gezer D, Andina N, Galli S, Cassel T, Geier F, Delezie J, Nienhold R, Hao-Shen H, Beisel C, Di Palma S, Dimeloe S, Trebicka J, Wolf D, Gassmann M, Fan TW, Lane AN, Handschin C, Dirnhofer S, Kröger N, Hess C, Radimerski T, Koschmieder S, Čokić VP, Skoda RC | Blood | 31511238 | Blood | 2019 Nov 21 |
| De novo synthesis of serine and glycine fuels purine nucleotide biosynthesis in human lung cancer tissues. | Fan TWM, Bruntz RC, Yang Y, Song H, Chernyavskaya Y, Deng P, Zhang Y, Shah PP, Beverly LJ, Qi Z, Mahan AL, Higashi RM, Dang CV, Lane AN | The Journal of biological chemistry | 31337706 | J Biol Chem | 2019 Sep 6 |
| Inferring Gene Regulatory Networks of Metabolic Enzymes Using Gradient Boosted Trees. | Zhang Y, Zhang X, Lane AN, Fan TW, Liu J | IEEE journal of biomedical and health informatics | 31380773 | IEEE J Biomed Health Inform | 2020 May |
| (13)C Tracer Studies of Metabolism in Mouse Tumor Xenografts. | Lane AN, Yan J, Fan TW | Bio-protocol | 26693168 | Bio Protoc | 2015 Nov 20 |
| Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier Transform Mass Spectrometry Experiments. | Flight RM, Mitchell JM, Moseley HNB | Metabolites | 35736448 | Metabolites | 2022 Jun 2 |
| Untargeted Lipidomics of Non-Small Cell Lung Carcinoma Demonstrates Differentially Abundant Lipid Classes in Cancer vs. Non-Cancer Tissue. | Mitchell JM, Flight RM, Moseley HNB | Metabolites | 34822397 | Metabolites | 2021 Oct 28 |
| In vivo deep network tracing reveals phosphofructokinase-mediated coordination of biosynthetic pathway activity in the myocardium. | Fulghum KL, Audam TN, Lorkiewicz PK, Zheng Y, Merchant M, Cummins TD, Dean WL, Cassel TA, Fan TWM, Hill BG | Journal of molecular and cellular cardiology | 34487754 | J Mol Cell Cardiol | 2022 Jan |
| 6-Phosphogluconate dehydrogenase (6PGD), a key checkpoint in reprogramming of regulatory T cells metabolism and function. | Daneshmandi S, Cassel T, Higashi RM, Fan TW, Seth P | eLife | 34709178 | Elife | 2021 Oct 28 |
| Fumarate hydratase-deficient renal cell carcinoma cells respond to asparagine by activation of the unfolded protein response and stimulation of the hexosamine biosynthetic pathway. | Panarsky R, Crooks DR, Lane AN, Yang Y, Cassel TA, Fan TW, Linehan WM, Moscow JA | Cancer & metabolism | 32774853 | Cancer Metab | 2020 |
| A negative reciprocal regulatory axis between cyclin D1 and HNF4α modulates cell cycle progression and metabolism in the liver. | Wu H, Reizel T, Wang YJ, Lapiro JL, Kren BT, Schug J, Rao S, Morgan A, Herman A, Shekels LL, Rassette MS, Lane AN, Cassel T, Fan TWM, Manivel JC, Gunewardena S, Apte U, Sicinski P, Kaestner KH, Albrecht JH | Proceedings of the National Academy of Sciences of the United States of America | 32631996 | Proc Natl Acad Sci U S A | 2020 Jul 21 |
| Metabolic reprogramming and Notch activity distinguish between non-small cell lung cancer subtypes. | Sellers K, Allen TD, Bousamra M 2nd, Tan J, Méndez-Lucas A, Lin W, Bah N, Chernyavskaya Y, MacRae JI, Higashi RM, Lane AN, Fan TW, Yuneva MO | British journal of cancer | 31114017 | Br J Cancer | 2019 Jul |
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| Distinctly perturbed metabolic networks underlie differential tumor tissue damages induced by immune modulator β-glucan in a two-case ex vivo non-small-cell lung cancer study. | Fan TW, Warmoes MO, Sun Q, Song H, Turchan-Cholewo J, Martin JT, Mahan A, Higashi RM, Lane AN | Cold Spring Harbor molecular case studies | 27551682 | Cold Spring Harb Mol Case Stud | 2016 Jul |
| Polarization and β-Glucan Reprogram Immunomodulatory Metabolism in Human Macrophages and Ex Vivo in Human Lung Cancer Tissues. | Fan TW, Daneshmandi S, Cassel TA, Uddin MB, Sledziona J, Thompson PT, Lin P, Higashi RM, Lane AN | Journal of immunology (Baltimore, Md. : 1950) | 36150727 | J Immunol | 2022 Nov 1 |
| Exercise-induced changes in myocardial glucose utilization during periods of active cardiac growth. | Fulghum KL, Collins HE, Lorkiewicz PK, Cassel TA, Fan TWM, Hill BG | Journal of molecular and cellular cardiology | 38703412 | J Mol Cell Cardiol | 2024 Jun |
| Segmented Flow Strategies for Integrating Liquid Chromatography-Mass Spectrometry with Nuclear Magnetic Resonance for Lipidomics. | Lei J, Mahar R, Chang MC, Collins J, Merritt ME, Garrett TJ, Yost RA | Analytical chemistry | 36630396 | Anal Chem | 2023 Jan 11 |
| Effects of β-caryophyllene and oxygen availability on cholesterol and fatty acids in breast cancer cells. | Frost CJ, Ramirez-Mata A, Khattri RB, Merritt ME, Frost SC | PloS one | 36893152 | PLoS One | 2023 |
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| Data-Driven Soft Independent Modeling of Class Analogy in Paper Spray Ionization Mass Spectrometry-Based Metabolomics for Rapid Detection of Prostate Cancer. | Pinto FG, Mahmud I, Rubio VY, Máquina ADV, Furtado Durans AF, Neto WB, Garrett TJ | Analytical chemistry | 35060703 | Anal Chem | 2022 Feb 1 |
| Cross-talk between branched-chain amino acids and hepatic mitochondria is compromised in nonalcoholic fatty liver disease. | Sunny NE, Kalavalapalli S, Bril F, Garrett TJ, Nautiyal M, Mathew JT, Williams CM, Cusi K | American journal of physiology. Endocrinology and metabolism | 26058864 | Am J Physiol Endocrinol Metab | 2015 Aug 15 |
| Customized metabolomics database for the analysis of NMR ¹H-¹H TOCSY and ¹³C-¹H HSQC-TOCSY spectra of complex mixtures. | Bingol K, Bruschweiler-Li L, Li DW, Brüschweiler R | Analytical chemistry | 24773139 | Anal Chem | 2014 Jun 3 |
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| (13)C NMR Metabolomics: INADEQUATE Network Analysis. | Clendinen CS, Pasquel C, Ajredini R, Edison AS | Analytical chemistry | 25932900 | Anal Chem | 2015 Jun 2 |
| Precast Gelatin-Based Molds for Tissue Embedding Compatible with Mass Spectrometry Imaging. | Gill EL, Yost RA, Vedam-Mai V, Garrett TJ | Analytical chemistry | 27935272 | Anal Chem | 2017 Jan 3 |
| Cancer progression by reprogrammed BCAA metabolism in myeloid leukaemia. | Hattori A, Tsunoda M, Konuma T, Kobayashi M, Nagy T, Glushka J, Tayyari F, McSkimming D, Kannan N, Tojo A, Edison AS, Ito T | Nature | 28514443 | Nature | 2017 May 25 |
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| Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation. | Koelmel JP, Ulmer CZ, Jones CM, Yost RA, Bowden JA | Biochimica et biophysica acta. Molecular and cell biology of lipids | 28263877 | Biochim Biophys Acta Mol Cell Biol Lipids | 2017 Aug |
| Staphylococcus aureus nitric oxide synthase (saNOS) modulates aerobic respiratory metabolism and cell physiology. | Mogen AB, Carroll RK, James KL, Lima G, Silva D, Culver JA, Petucci C, Shaw LN, Rice KC | Molecular microbiology | 28431199 | Mol Microbiol | 2017 Jul |
| Measuring the Integrity of Gas-Phase Conformers of Sodiated 25-Hydroxyvitamin D3 by Drift Tube, Traveling Wave, Trapped, and High-Field Asymmetric Ion Mobility. | Oranzi NR, Kemperman RHJ, Wei MS, Petkovska VI, Granato SW, Rochon B, Kaszycki J, La Rotta A, Jeanne Dit Fouque K, Fernandez-Lima F, Yost RA | Analytical chemistry | 30807105 | Anal Chem | 2019 Mar 19 |
| Cancer in the crosshairs: targeting cancer metabolism with hyperpolarized carbon-13 MRI technology. | von Morze C, Merritt ME | NMR in biomedicine | 29870085 | NMR Biomed | 2019 Oct |
| Untargeted metabolomic analysis in naturally occurring canine diabetes mellitus identifies similarities to human Type 1 Diabetes. | O'Kell AL, Garrett TJ, Wasserfall C, Atkinson MA | Scientific reports | 28842637 | Sci Rep | 2017 Aug 25 |
| NIST lipidomics workflow questionnaire: an assessment of community-wide methodologies and perspectives. | Bowden JA, Ulmer CZ, Jones CM, Koelmel JP, Yost RA | Metabolomics : Official journal of the Metabolomic Society | 30830346 | Metabolomics | 2018 Mar 20 |
| Untargeted metabolomic analysis in non-fasted diabetic dogs by UHPLC-HRMS. | O'Kell AL, Garrett TJ, Wasserfall C, Atkinson MA | Metabolomics : Official journal of the Metabolomic Society | 30830416 | Metabolomics | 2019 Jan 22 |
| Age-dependent changes in metabolite profile and lipid saturation in dystrophic mice. | Lee-McMullen B, Chrzanowski SM, Vohra R, Forbes SC, Vandenborne K, Edison AS, Walter GA | NMR in biomedicine | 30848538 | NMR Biomed | 2019 May |
| Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values. | Koelmel JP, Cochran JA, Ulmer CZ, Levy AJ, Patterson RE, Olsen BC, Yost RA, Bowden JA, Garrett TJ | BMC bioinformatics | 31035918 | BMC Bioinformatics | 2019 Apr 29 |
| Remodeling of substrate consumption in the murine sTAC model of heart failure. | Turer A, Altamirano F, Schiattarella GG, May H, Gillette TG, Malloy CR, Merritt ME | Journal of molecular and cellular cardiology | 31340162 | J Mol Cell Cardiol | 2019 Sep |
| Tissue-specific analysis of lipid species in Drosophila during overnutrition by UHPLC-MS/MS and MALDI-MSI. | Tuthill BF 2nd, Searcy LA, Yost RA, Musselman LP | Journal of lipid research | 31900315 | J Lipid Res | 2020 Mar |
| An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection. | Antharam VC, McEwen DC, Garrett TJ, Dossey AT, Li EC, Kozlov AN, Mesbah Z, Wang GP | PloS one | 26871580 | PLoS One | 2016 |
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| Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine. | Zallot R, Yazdani M, Goyer A, Ziemak MJ, Guan JC, McCarty DR, de Crécy-Lagard V, Gerdes S, Garrett TJ, Benach J, Hunt JF, Shintani DK, Hanson AD | The Biochemical journal | 25014715 | Biochem J | 2014 Oct 1 |
| Skeletal muscle overexpression of nicotinamide phosphoribosyl transferase in mice coupled with voluntary exercise augments exercise endurance. | Costford SR, Brouwers B, Hopf ME, Sparks LM, Dispagna M, Gomes AP, Cornnell HH, Petucci C, Phelan P, Xie H, Yi F, Walter GA, Osborne TF, Sinclair DA, Mynatt RL, Ayala JE, Gardell SJ, Smith SR | Molecular metabolism | 29146412 | Mol Metab | 2018 Jan |
| Pilot Study of Metabolomics and Psychoneurological Symptoms in Women With Early Stage Breast Cancer. | Lyon DE, Starkweather A, Yao Y, Garrett T, Kelly DL, Menzies V, Dereziński P, Datta S, Kumar S, Jackson-Cook C | Biological research for nursing | 29258398 | Biol Res Nurs | 2018 Mar |
| Obesity-Dependent Adipokine Chemerin Suppresses Fatty Acid Oxidation to Confer Ferroptosis Resistance. | Tan SK, Mahmud I, Fontanesi F, Puchowicz M, Neumann CKA, Griswold AJ, Patel R, Dispagna M, Ahmed HH, Gonzalgo ML, Brown JM, Garrett TJ, Welford SM | Cancer discovery | 33757970 | Cancer Discov | 2021 Aug |
| Integrated RNA and metabolite profiling of urine liquid biopsies for prostate cancer biomarker discovery. | Lee B, Mahmud I, Marchica J, Dereziński P, Qi F, Wang F, Joshi P, Valerio F, Rivera I, Patel V, Pavlovich CP, Garrett TJ, Schroth GP, Sun Y, Perera RJ | Scientific reports | 32111915 | Sci Rep | 2020 Feb 28 |
| Global Metabolomics in Allogeneic Hematopoietic Cell Transplantation Recipients Discordant for Chronic Graft-versus-Host Disease. | Lynch Kelly D, Farhadfar N, Starkweather A, Garrett TJ, Yao Y, Wingard JR, Mahmud I, Menzies V, Patel P, Alabasi KM, Lyon D | Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation | 32592859 | Biol Blood Marrow Transplant | 2020 Oct |
| Insulin resistance is mechanistically linked to hepatic mitochondrial remodeling in non-alcoholic fatty liver disease. | Shannon CE, Ragavan M, Palavicini JP, Fourcaudot M, Bakewell TM, Valdez IA, Ayala I, Jin ES, Madesh M, Han X, Merritt ME, Norton L | Molecular metabolism | 33359401 | Mol Metab | 2021 Mar |
| Metabolomics of primary cutaneous melanoma and matched adjacent extratumoral microenvironment. | Taylor NJ, Gaynanova I, Eschrich SA, Welsh EA, Garrett TJ, Beecher C, Sharma R, Koomen JM, Smalley KSM, Messina JL, Kanetsky PA | PloS one | 33108391 | PLoS One | 2020 |
| Mass Spectrometry-Based Cellular Metabolomics: Current Approaches, Applications, and Future Directions. | Domenick TM, Gill EL, Vedam-Mai V, Yost RA | Analytical chemistry | 33146525 | Anal Chem | 2021 Jan 12 |
| A rapid and robust method for amino acid quantification using a simple N-hydroxysuccinimide ester derivatization and liquid chromatography-ion mobility-mass spectrometry. | Domenick TM, Jones AL, Kemperman RHJ, Yost RA | Analytical and bioanalytical chemistry | 35338375 | Anal Bioanal Chem | 2022 Jul |
| Targeted metabolomics and mathematical modeling demonstrate that vitamin B-6 restriction alters one-carbon metabolism in cultured HepG2 cells. | da Silva VR, Ralat MA, Quinlivan EP, DeRatt BN, Garrett TJ, Chi YY, Frederik Nijhout H, Reed MC, Gregory JF 3rd | American journal of physiology. Endocrinology and metabolism | 24824655 | Am J Physiol Endocrinol Metab | 2014 Jul 1 |
| Emerging new strategies for successful metabolite identification in metabolomics. | Bingol K, Bruschweiler-Li L, Li D, Zhang B, Xie M, Brüschweiler R | Bioanalysis | 26915807 | Bioanalysis | 2016 Mar |
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| Cation-Dependent Conformations in 25-Hydroxyvitamin D3-Cation Adducts Measured by Ion Mobility-Mass Spectrometry and Theoretical Modeling. | Chouinard CD, Cruzeiro VWD, Kemperman RHJ, Oranzi NR, Roitberg AE, Yost RA | International journal of mass spectrometry | 30034270 | Int J Mass Spectrom | 2018 Sep |
| Optimization of Folch, Bligh-Dyer, and Matyash sample-to-extraction solvent ratios for human plasma-based lipidomics studies. | Ulmer CZ, Jones CM, Yost RA, Garrett TJ, Bowden JA | Analytica chimica acta | 30292311 | Anal Chim Acta | 2018 Dec 11 |
| Multiomics approach reveals metabolic changes in the heart at birth. | Walejko JM, Koelmel JP, Garrett TJ, Edison AS, Keller-Wood M | American journal of physiology. Endocrinology and metabolism | 30300011 | Am J Physiol Endocrinol Metab | 2018 Dec 1 |
| A comprehensive analysis of myocardial substrate preference emphasizes the need for a synchronized fluxomic/metabolomic research design. | Ragavan M, Kirpich A, Fu X, Burgess SC, McIntyre LM, Merritt ME | American journal of physiology. Heart and circulatory physiology | 28411229 | Am J Physiol Heart Circ Physiol | 2017 Jun 1 |
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| A Robust Lipidomics Workflow for Mammalian Cells, Plasma, and Tissue Using Liquid-Chromatography High-Resolution Tandem Mass Spectrometry. | Ulmer CZ, Patterson RE, Koelmel JP, Garrett TJ, Yost RA | Methods in molecular biology (Clifton, N.J.) | 28660577 | Methods Mol Biol | 2017 |
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| The need for reflective consideration of an integrative understanding of cardiovascular consequences to PVP formulated C60 exposure. | Wingard CJ, Holland NA, Thompson LC, Brown JM, Lewin AH, Sumner SJ, Fennell TR, Vidanapathirana AK | Toxicological sciences : an official journal of the Society of Toxicology | 25422842 | Toxicol Sci | 2014 Oct |
| Serum trace metal association with response to erythropoiesis stimulating agents in incident and prevalent hemodialysis patients. | Brier ME, Gooding JR, Harrington JM, Burgess JP, McRitchie SL, Zhang X, Rovin BH, Klein JB, Himmelfarb J, Sumner SJ, Merchant ML | Scientific reports | 33214633 | Sci Rep | 2020 Nov 19 |
| The role of gut microbial community and metabolomic shifts in adaptive resistance of Atlantic killifish (Fundulus heteroclitus) to polycyclic aromatic hydrocarbons. | Redfern LK, Jayasundara N, Singleton DR, Di Giulio RT, Carlson J, Sumner SJ, Gunsch CK | The Science of the total environment | 33647645 | Sci Total Environ | 2021 Jul 1 |
| Prospective association of the infant gut microbiome with social behaviors in the ECHO consortium. | Laue HE, Bonham KS, Coker MO, Moroishi Y, Pathmasiri W, McRitchie S, Sumner S, Hoen AG, Karagas MR, Klepac-Ceraj V, Madan JC, program collaborators for Environmental influences on Child Health Outcomes | Molecular autism | 38760865 | Mol Autism | 2024 May 17 |
| Metabolomics in the assessment of chemical-induced reproductive and developmental outcomes using non-invasive biological fluids: application to the study of butylbenzyl phthalate. | Sumner S, Snyder R, Burgess J, Myers C, Tyl R, Sloan C, Fennell T | Journal of applied toxicology : JAT | 19731247 | J Appl Toxicol | 2009 Nov |
| C₆₀ exposure augments cardiac ischemia/reperfusion injury and coronary artery contraction in Sprague Dawley rats. | Thompson LC, Urankar RN, Holland NA, Vidanapathirana AK, Pitzer JE, Han L, Sumner SJ, Lewin AH, Fennell TR, Lust RM, Brown JM, Wingard CJ | Toxicological sciences : an official journal of the Society of Toxicology | 24431213 | Toxicol Sci | 2014 Apr |
| Human microbiota, blood group antigens, and disease. | Ewald DR, Sumner SCJ | Wiley interdisciplinary reviews. Systems biology and medicine | 29316320 | Wiley Interdiscip Rev Syst Biol Med | 2018 May |
| Effect of endotoxin and alum adjuvant vaccine on peanut allergy. | Johnson-Weaver BT, McRitchie S, Mercier KA, Pathmasiri W, Sumner SJ, Chan C, Germolec D, Kulis M, Burks AW, Staats HF | The Journal of allergy and clinical immunology | 28927819 | J Allergy Clin Immunol | 2018 Feb |
| Metabolomics reveal physiological changes in mayfly larvae (Neocloeon triangulifer) at ecological upper thermal limits. | Chou H, Pathmasiri W, Deese-Spruill J, Sumner S, Buchwalter DB | Journal of insect physiology | 28733240 | J Insect Physiol | 2017 Aug |
| Metabolomics to reveal biomarkers and pathways of preterm birth: a systematic review and epidemiologic perspective. | Carter RA, Pan K, Harville EW, McRitchie S, Sumner S | Metabolomics : Official journal of the Metabolomic Society | 31506796 | Metabolomics | 2019 Sep 10 |
| Meprin β metalloproteases associated with differential metabolite profiles in the plasma and urine of mice with type 1 diabetes and diabetic nephropathy. | Gooding J, Cao L, Whitaker C, Mwiza JM, Fernander M, Ahmed F, Acuff Z, McRitchie S, Sumner S, Ongeri EM | BMC nephrology | 31023251 | BMC Nephrol | 2019 Apr 25 |
| Fecal metabolomics reveals products of dysregulated proteolysis and altered microbial metabolism in obesity-related osteoarthritis. | Rushing BR, McRitchie S, Arbeeva L, Nelson AE, Azcarate-Peril MA, Li YY, Qian Y, Pathmasiri W, Sumner SCJ, Loeser RF | Osteoarthritis and cartilage | 34718137 | Osteoarthritis Cartilage | 2022 Jan |
| Association of Cesarean Delivery and Formula Supplementation with the Stool Metabolome of 6-Week-Old Infants. | Hoen AG, Coker MO, Madan JC, Pathmasiri W, McRitchie S, Dade EF, Doherty BT, Sumner S, Karagas MR | Metabolites | 34677417 | Metabolites | 2021 Oct 13 |
| Pulmonary instillation of multi-walled carbon nanotubes promotes coronary vasoconstriction and exacerbates injury in isolated hearts. | Thompson LC, Frasier CR, Sloan RC, Mann EE, Harrison BS, Brown JM, Brown DA, Wingard CJ | Nanotoxicology | 23102262 | Nanotoxicology | 2014 Feb |
| Potential serum biomarkers from a metabolomics study of autism. | Wang H, Liang S, Wang M, Gao J, Sun C, Wang J, Xia W, Wu S, Sumner SJ, Zhang F, Sun C, Wu L | Journal of psychiatry & neuroscience : JPN | 26395811 | J Psychiatry Neurosci | 2016 Jan |
| Neonatal Metabolomic Profiles Related to Prenatal Arsenic Exposure. | Laine JE, Bailey KA, Olshan AF, Smeester L, Drobná Z, Stýblo M, Douillet C, García-Vargas G, Rubio-Andrade M, Pathmasiri W, McRitchie S, Sumner SJ, Fry RC | Environmental science & technology | 27997141 | Environ Sci Technol | 2017 Jan 3 |
| Plasma metabolomics analysis in sickle cell disease patients with albuminuria - an exploratory study. | Elsherif L, Pathmasiri W, McRitchie S, Archer DR, Ataga KI | British journal of haematology | 30198565 | Br J Haematol | 2019 May |
| Alterations in Microbial-Associated Fecal Metabolites in Relation to Arsenic Exposure Among Infants. | Karagas MR, McRitchie S, Hoen AG, Takigawa C, Jackson B, Baker ER, Madan J, Sumner SJ, Pathmasiri W | Exposure and health | 36776720 | Expo Health | 2022 Dec |
| Patterns of infant fecal metabolite concentrations and social behavioral development in toddlers. | Laue HE, Bauer JA, Pathmasiri W, Sumner SCJ, McRitchie S, Palys TJ, Hoen AG, Madan JC, Karagas MR | Pediatric research | 38509226 | Pediatr Res | 2024 Jul |
| PVP formulated fullerene (C60) increases Rho-kinase dependent vascular tissue contractility in pregnant Sprague Dawley rats. | Vidanapathirana AK, Thompson LC, Mann EE, Odom JT, Holland NA, Sumner SJ, Han L, Lewin AH, Fennell TR, Brown JM, Wingard CJ | Reproductive toxicology (Elmsford, N.Y.) | 25088243 | Reprod Toxicol | 2014 Nov |
| Analysis of human serum and whole blood for mineral content by ICP-MS and ICP-OES: development of a mineralomics method. | Harrington JM, Young DJ, Essader AS, Sumner SJ, Levine KE | Biological trace element research | 24917052 | Biol Trace Elem Res | 2014 Jul |
| Metabolomics reveals biomarkers of opioid use disorder. | Ghanbari R, Li Y, Pathmasiri W, McRitchie S, Etemadi A, Pollock JD, Poustchi H, Rahimi-Movaghar A, Amin-Esmaeili M, Roshandel G, Shayanrad A, Abaei B, Malekzadeh R, Sumner SCJ | Translational psychiatry | 33542199 | Transl Psychiatry | 2021 Feb 4 |
| Untargeted analysis of first trimester serum to reveal biomarkers of pregnancy complications: a case-control discovery phase study. | Harville EW, Li YY, Pan K, McRitchie S, Pathmasiri W, Sumner S | Scientific reports | 33568690 | Sci Rep | 2021 Feb 10 |
| Untargeted Metabolomics: Biochemical Perturbations in Golestan Cohort Study Opium Users Inform Intervention Strategies. | Li YY, Ghanbari R, Pathmasiri W, McRitchie S, Poustchi H, Shayanrad A, Roshandel G, Etemadi A, Pollock JD, Malekzadeh R, Sumner SCJ | Frontiers in nutrition | 33415121 | Front Nutr | 2020 |
| The Importance of the Biological Impact of Exposure to the Concept of the Exposome. | Dennis KK, Auerbach SS, Balshaw DM, Cui Y, Fallin MD, Smith MT, Spira A, Sumner S, Miller GW | Environmental health perspectives | 27258438 | Environ Health Perspect | 2016 Oct |
| Preterm neonatal urinary renal developmental and acute kidney injury metabolomic profiling: an exploratory study. | Mercier K, McRitchie S, Pathmasiri W, Novokhatny A, Koralkar R, Askenazi D, Brophy PD, Sumner S | Pediatric nephrology (Berlin, Germany) | 27435284 | Pediatr Nephrol | 2017 Jan |
| Obesity Increases Mortality and Modulates the Lung Metabolome during Pandemic H1N1 Influenza Virus Infection in Mice. | Milner JJ, Rebeles J, Dhungana S, Stewart DA, Sumner SC, Meyers MH, Mancuso P, Beck MA | Journal of immunology (Baltimore, Md. : 1950) | 25862817 | J Immunol | 2015 May 15 |
| Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue. | Sun X, Stewart DA, Sandhu R, Kirk EL, Pathmasiri WW, McRitchie SL, Clark RF, Troester MA, Sumner SJ | PloS one | 29668675 | PLoS One | 2018 |
| Distribution and biomarkers of carbon-14-labeled fullerene C60 ([(14) C(U)]C60 ) in female rats and mice for up to 30 days after intravenous exposure. | Sumner SC, Snyder RW, Wingard C, Mortensen NP, Holland NA, Shannahan JH, Dhungana S, Pathmasiri W, Han L, Lewin AH, Fennell TR | Journal of applied toxicology : JAT | 25727383 | J Appl Toxicol | 2015 Dec |
| Distribution and biomarker of carbon-14 labeled fullerene C60 ([(14) C(U)]C60 ) in pregnant and lactating rats and their offspring after maternal intravenous exposure. | Snyder RW, Fennell TR, Wingard CJ, Mortensen NP, Holland NA, Shannahan JH, Pathmasiri W, Lewin AH, Sumner SC | Journal of applied toxicology : JAT | 26081520 | J Appl Toxicol | 2015 Dec |
| LC-MS-based metabolomics analysis to identify meprin-β-associated changes in kidney tissue from mice with STZ-induced type 1 diabetes and diabetic kidney injury. | Gooding J, Cao L, Ahmed F, Mwiza JM, Fernander M, Whitaker C, Acuff Z, McRitchie S, Sumner S, Ongeri EM | American journal of physiology. Renal physiology | 31411076 | Am J Physiol Renal Physiol | 2019 Oct 1 |
| Exposure to inorganic arsenic and its methylated metabolites alters metabolomics profiles in INS-1 832/13 insulinoma cells and isolated pancreatic islets. | Li YY, Douillet C, Huang M, Beck R, Sumner SJ, Styblo M | Archives of toxicology | 32277266 | Arch Toxicol | 2020 Jun |
| Metabolomics Reveals New Mechanisms for Pathogenesis in Barth Syndrome and Introduces Novel Roles for Cardiolipin in Cellular Function. | Sandlers Y, Mercier K, Pathmasiri W, Carlson J, McRitchie S, Sumner S, Vernon HJ | PloS one | 27015085 | PLoS One | 2016 |
| Predicting and Defining Steroid Resistance in Pediatric Nephrotic Syndrome Using Plasma Metabolomics. | Gooding JR, Agrawal S, McRitchie S, Acuff Z, Merchant ML, Klein JB, Smoyer WE, Sumner SJ, Midwest Pediatric Nephrology Consortium | Kidney international reports | 31922063 | Kidney Int Rep | 2020 Jan |
| Disposition of intravenously or orally administered silver nanoparticles in pregnant rats and the effect on the biochemical profile in urine. | Fennell TR, Mortensen NP, Black SR, Snyder RW, Levine KE, Poitras E, Harrington JM, Wingard CJ, Holland NA, Pathmasiri W, Sumner SC | Journal of applied toxicology : JAT | 27696470 | J Appl Toxicol | 2017 May |
| Metabolites as biomarkers of adverse reactions following vaccination: A pilot study using nuclear magnetic resonance metabolomics. | McClenathan BM, Stewart DA, Spooner CE, Pathmasiri WW, Burgess JP, McRitchie SL, Choi YS, Sumner SC | Vaccine | 28169076 | Vaccine | 2017 Mar 1 |
| Stable Isotope-Resolved Metabolomic Differences between Hormone-Responsive and Triple-Negative Breast Cancer Cell Lines. | Winnike JH, Stewart DA, Pathmasiri WW, McRitchie SL, Sumner SJ | International journal of breast cancer | 30363973 | Int J Breast Cancer | 2018 |
| Associations of maternal plasma and umbilical cord plasma metabolomics profiles with birth anthropometric measures. | Yeum D, Gilbert-Diamond D, Doherty B, Coker M, Stewart D, Kirchner D, McRitchie S, Sumner S, Karagas MR, Hoen AG | Pediatric research | 36627359 | Pediatr Res | 2023 Jul |
| Intravenous administration of three multiwalled carbon nanotubes to female rats and their effect on urinary biochemical profile. | Mortensen NP, Snyder RW, Pathmasiri W, Moreno Caffaro M, Sumner SJ, Fennell TR | Journal of applied toxicology : JAT | 34569639 | J Appl Toxicol | 2022 Mar |
| Using Metabolomics to Investigate Biomarkers of Drug Addiction. | Ghanbari R, Sumner S | Trends in molecular medicine | 29397321 | Trends Mol Med | 2018 Feb |
| Metabolic profiling of a chronic kidney disease cohort reveals metabolic phenotype more likely to benefit from a probiotic. | Saggi SJ, Mercier K, Gooding JR, Friedman E, Vyas U, Ranganathan N, Ranganathan P, McRitchie S, Sumner S | International journal of probiotics & prebiotics | 30774576 | Int J Probiotics Prebiotics | 2017 |
| Maternal Early Pregnancy Serum Metabolomics Profile and Abnormal Vaginal Bleeding as Predictors of Placental Abruption: A Prospective Study. | Gelaye B, Sumner SJ, McRitchie S, Carlson JE, Ananth CV, Enquobahrie DA, Qiu C, Sorensen TK, Williams MA | PloS one | 27300725 | PLoS One | 2016 |
| A Metabolomics Approach to Investigate Kukoamine B-A Potent Natural Product With Anti-diabetic Properties. | Li YY, Stewart DA, Ye XM, Yin LH, Pathmasiri WW, McRitchie SL, Fennell TR, Cheung HY, Sumner SJ | Frontiers in pharmacology | 30723413 | Front Pharmacol | 2018 |
| The impact of early-life sub-therapeutic antibiotic treatment (STAT) on excessive weight is robust despite transfer of intestinal microbes. | Schulfer AF, Schluter J, Zhang Y, Brown Q, Pathmasiri W, McRitchie S, Sumner S, Li H, Xavier JB, Blaser MJ | The ISME journal | 30651608 | ISME J | 2019 May |
| Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET). | Sumner LW, Styczynski M, McLean J, Fiehn O, Jander G, Liao J, Sumner S, Britz-McKibbin P, Welti R, Jones AD, Dorrestein PC, Bearden D, Kaddurah-Daouk R | Metabolomics : Official journal of the Metabolomic Society | 28018159 | Metabolomics | 2015 Feb |
| Inflammatory regulation of steroid sulfatase: A novel mechanism to control estrogen homeostasis and inflammation in chronic liver disease. | Jiang M, Klein M, Zanger UM, Mohammad MK, Cave MC, Gaikwad NW, Dias NJ, Selcer KW, Guo Y, He J, Zhang X, Shen Q, Qin W, Li J, Li S, Xie W | Journal of hepatology | 26220752 | J Hepatol | 2016 Jan |
| Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism. | Edlund A, Yang Y, Yooseph S, Hall AP, Nguyen DD, Dorrestein PC, Nelson KE, He X, Lux R, Shi W, McLean JS | The ISME journal | 26023872 | ISME J | 2015 Dec |
| Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. | Kol A, Foutouhi S, Walker NJ, Kong NT, Weimer BC, Borjesson DL | Stem cells and development | 24803072 | Stem Cells Dev | 2014 Aug 15 |
| Tracing phenolic metabolism in Vitis vinifera berries with 13C6-phenylalanine: implication of an unidentified intermediate reservoir. | Chassy AW, Adams DO, Waterhouse AL | Journal of agricultural and food chemistry | 24611798 | J Agric Food Chem | 2014 Mar 19 |
| Vitamin D in Tear Fluid. | Lu X, Elizondo RA, Nielsen R, Christensen EI, Yang J, Hammock BD, Watsky MA | Investigative ophthalmology & visual science | 26348637 | Invest Ophthalmol Vis Sci | 2015 Sep |
| The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition. | Sperber H, Mathieu J, Wang Y, Ferreccio A, Hesson J, Xu Z, Fischer KA, Devi A, Detraux D, Gu H, Battle SL, Showalter M, Valensisi C, Bielas JH, Ericson NG, Margaretha L, Robitaille AM, Margineantu D, Fiehn O, Hockenbery D, Blau CA, Raftery D, Margolin AA, Hawkins RD, Moon RT, Ware CB, Ruohola-Baker H | Nature cell biology | 26571212 | Nat Cell Biol | 2015 Dec |
| Genomic, Proteomic, and Metabolomic Data Integration Strategies. | Wanichthanarak K, Fahrmann JF, Grapov D | Biomarker insights | 26396492 | Biomark Insights | 2015 |
| The human colostrum whey proteome is altered in gestational diabetes mellitus. | Grapov D, Lemay DG, Weber D, Phinney BS, Azulay Chertok IR, Gho DS, German JB, Smilowitz JT | Journal of proteome research | 25338220 | J Proteome Res | 2015 Jan 2 |
| LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries. | Kind T, Okazaki Y, Saito K, Fiehn O | Analytical chemistry | 25340521 | Anal Chem | 2014 Nov 18 |
| Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma. | Wikoff WR, Grapov D, Fahrmann JF, DeFelice B, Rom WN, Pass HI, Kim K, Nguyen U, Taylor SL, Gandara DR, Kelly K, Fiehn O, Miyamoto S | Cancer prevention research (Philadelphia, Pa.) | 25657018 | Cancer Prev Res (Phila) | 2015 May |
| High-dose simvastatin exhibits enhanced lipid-lowering effects relative to simvastatin/ezetimibe combination therapy. | Snowden SG, Grapov D, Settergren M, D'Alexandri FL, Haeggström JZ, Fiehn O, Hyötyläinen T, Pedersen TL, Newman JW, Orešič M, Pernow J, Wheelock CE | Circulation. Cardiovascular genetics | 25516625 | Circ Cardiovasc Genet | 2014 Dec |
| Metabolomics and transcriptomics identify pathway differences between visceral and subcutaneous adipose tissue in colorectal cancer patients: the ColoCare study. | Liesenfeld DB, Grapov D, Fahrmann JF, Salou M, Scherer D, Toth R, Habermann N, Böhm J, Schrotz-King P, Gigic B, Schneider M, Ulrich A, Herpel E, Schirmacher P, Fiehn O, Lampe JW, Ulrich CM | The American journal of clinical nutrition | 26156741 | Am J Clin Nutr | 2015 Aug |
| Cardiac steatosis potentiates angiotensin II effects in the heart. | Glenn DJ, Cardema MC, Ni W, Zhang Y, Yeghiazarians Y, Grapov D, Fiehn O, Gardner DG | American journal of physiology. Heart and circulatory physiology | 25485904 | Am J Physiol Heart Circ Physiol | 2015 Feb 15 |
| Metabolomics in psoriatic disease: pilot study reveals metabolite differences in psoriasis and psoriatic arthritis. | Armstrong AW, Wu J, Johnson MA, Grapov D, Azizi B, Dhillon J, Fiehn O | F1000Research | 25580230 | F1000Res | 2014 |
| Inhibition of soluble epoxide hydrolase attenuates hepatic fibrosis and endoplasmic reticulum stress induced by carbon tetrachloride in mice. | Harris TR, Bettaieb A, Kodani S, Dong H, Myers R, Chiamvimonvat N, Haj FG, Hammock BD | Toxicology and applied pharmacology | 25827057 | Toxicol Appl Pharmacol | 2015 Jul 15 |
| Will the 40-gene expression classifier predict responders to EGFR targeted chemotherapy for the invasive bladder cancer patients? | Kim J, Kim WJ | Annals of translational medicine | 25738138 | Ann Transl Med | 2015 Feb |
| Diabetes Associated Metabolomic Perturbations in NOD Mice. | Grapov D, Fahrmann J, Hwang J, Poudel A, Jo J, Periwal V, Fiehn O, Hara M | Metabolomics : Official journal of the Metabolomic Society | 25755629 | Metabolomics | 2015 Apr |
| Identification of small molecules using accurate mass MS/MS search. | Kind T, Tsugawa H, Cajka T, Ma Y, Lai Z, Mehta SS, Wohlgemuth G, Barupal DK, Showalter MR, Arita M, Fiehn O | Mass spectrometry reviews | 28436590 | Mass Spectrom Rev | 2018 Jul |
| Synthesis of cyclooxygenase metabolites of 8,9-epoxyeicosatrienoic acid (EET): 11- and 15-hydroxy 8,9-EETs. | Barnych B, Rand AA, Cajka T, Lee KSS, Hammock BD | Organic & biomolecular chemistry | 28470279 | Org Biomol Chem | 2017 May 23 |
| Sweat lipid mediator profiling: a noninvasive approach for cutaneous research. | Agrawal K, Hassoun LA, Foolad N, Pedersen TL, Sivamani RK, Newman JW | Journal of lipid research | 27875258 | J Lipid Res | 2017 Jan |
| Are We Ready to Use the Omics Strategies for Precision Medicine? | Kim J | International neurourology journal | 27915470 | Int Neurourol J | 2016 Nov |
| Early PQQ supplementation has persistent long-term protective effects on developmental programming of hepatic lipotoxicity and inflammation in obese mice. | Jonscher KR, Stewart MS, Alfonso-Garcia A, DeFelice BC, Wang XX, Luo Y, Levi M, Heerwagen MJ, Janssen RC, de la Houssaye BA, Wiitala E, Florey G, Jonscher RL, Potma EO, Fiehn O, Friedman JE | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 28007783 | FASEB J | 2017 Apr |
| Altered soluble epoxide hydrolase-derived oxylipins in patients with seasonal major depression: An exploratory study. | Hennebelle M, Otoki Y, Yang J, Hammock BD, Levitt AJ, Taha AY, Swardfager W | Psychiatry research | 28259037 | Psychiatry Res | 2017 Jun |
| Integrated Metabolomics and Proteomics Highlight Altered Nicotinamide- and Polyamine Pathways in Lung Adenocarcinoma. | Fahrmann JF, Grapov DD, Wanichthanarak K, DeFelice BC, Salemi MR, Rom WN, Gandara DR, Phinney BS, Fiehn O, Pass H, Miyamoto S | Carcinogenesis | 28049629 | Carcinogenesis | 2017 Mar |
| Cyclooxygenase-derived proangiogenic metabolites of epoxyeicosatrienoic acids. | Rand AA, Barnych B, Morisseau C, Cajka T, Lee KSS, Panigrahy D, Hammock BD | Proceedings of the National Academy of Sciences of the United States of America | 28396419 | Proc Natl Acad Sci U S A | 2017 Apr 25 |
| Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators. | Flitter BA, Hvorecny KL, Ono E, Eddens T, Yang J, Kwak DH, Bahl CD, Hampton TH, Morisseau C, Hammock BD, Liu X, Lee JS, Kolls JK, Levy BD, Madden DR, Bomberger JM | Proceedings of the National Academy of Sciences of the United States of America | 27980032 | Proc Natl Acad Sci U S A | 2017 Jan 3 |
| Lipidomic Analysis of Oxidized Fatty Acids in Plant and Algae Oils. | Richardson CE, Hennebelle M, Otoki Y, Zamora D, Yang J, Hammock BD, Taha AY | Journal of agricultural and food chemistry | 28157307 | J Agric Food Chem | 2017 Mar 8 |
| Oleocanthal-rich extra virgin olive oil demonstrates acute anti-platelet effects in healthy men in a randomized trial. | Agrawal K, Melliou E, Li X, Pedersen TL, Wang SC, Magiatis P, Newman JW, Holt RR | Journal of functional foods | 29904393 | J Funct Foods | 2017 Sep |
| Dose-related liver injury of Geniposide associated with the alteration in bile acid synthesis and transportation. | Tian J, Zhu J, Yi Y, Li C, Zhang Y, Zhao Y, Pan C, Xiang S, Li X, Li G, Newman JW, Feng X, Liu J, Han J, Wang L, Gao Y, La Frano MR, Liang A | Scientific reports | 28827769 | Sci Rep | 2017 Aug 21 |
| Epidermal growth factor expression as a predictor of chemotherapeutic resistance in muscle-invasive bladder cancer. | Mansour AM, Abdelrahim M, Laymon M, Elsherbeeny M, Sultan M, Shokeir A, Mosbah A, Abol-Enein H, Awadalla A, Cho E, Sairam V, Park TD, Shahid M, Kim J | BMC urology | 30413194 | BMC Urol | 2018 Nov 9 |
| Effects of Gut Bacteria Depletion and High-Na(+) and Low-K(+) Intake on Circulating Levels of Biogenic Amines. | Blaženović I, Oh YT, Li F, Ji J, Nguyen AK, Wancewicz B, Bender JM, Fiehn O, Youn JH | Molecular nutrition & food research | 30513547 | Mol Nutr Food Res | 2019 Feb |
| Soluble epoxide hydrolase deficiency inhibits dextran sulfate sodium-induced colitis and carcinogenesis in mice. | Zhang W, Li H, Dong H, Liao J, Hammock BD, Yang GY | Anticancer research | 24324059 | Anticancer Res | 2013 Dec |
| Quantitative Proteomic Analysis Reveals Caffeine-Perturbed Proteomic Profiles in Normal Bladder Epithelial Cells. | Shahid M, Kim M, Yeon A, Andres AM, You S, Kim J | Proteomics | 30232827 | Proteomics | 2018 Oct |
| Umbilical cord blood metabolomics reveal distinct signatures of dyslipidemia prior to bronchopulmonary dysplasia and pulmonary hypertension. | La Frano MR, Fahrmann JF, Grapov D, Pedersen TL, Newman JW, Fiehn O, Underwood MA, Mestan K, Steinhorn RH, Wedgwood S | American journal of physiology. Lung cellular and molecular physiology | 30113229 | Am J Physiol Lung Cell Mol Physiol | 2018 Nov 1 |
| Oxylipin Profiling of Alzheimer's Disease in Nondiabetic and Type 2 Diabetic Elderly. | Morris JK, Piccolo BD, John CS, Green ZD, Thyfault JP, Adams SH | Metabolites | 31491971 | Metabolites | 2019 Sep 5 |
| Luteal Lipids Regulate Progesterone Production and May Modulate Immune Cell Function During the Estrous Cycle and Pregnancy. | Hughes CHK, Bosviel R, Newman JW, Pate JL | Frontiers in endocrinology | 31636603 | Front Endocrinol (Lausanne) | 2019 |
| α-Linolenic acid-enriched butter attenuated high fat diet-induced insulin resistance and inflammation by promoting bioconversion of n-3 PUFA and subsequent oxylipin formation. | Fan R, Kim J, You M, Giraud D, Toney AM, Shin SH, Kim SY, Borkowski K, Newman JW, Chung S | The Journal of nutritional biochemistry | 31760228 | J Nutr Biochem | 2020 Feb |
| Effect of fish oil on monoepoxides derived from fatty acids during cardiac surgery. | Akintoye E, Wu JH, Hou T, Song X, Yang J, Hammock B, Mozaffarian D | Journal of lipid research | 26749073 | J Lipid Res | 2016 Mar |
| Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion. | Faber F, Tran L, Byndloss MX, Lopez CA, Velazquez EM, Kerrinnes T, Nuccio SP, Wangdi T, Fiehn O, Tsolis RM, Bäumler AJ | Nature | 27309805 | Nature | 2016 Jun 30 |
| A Genetic Response Score for Hydrochlorothiazide Use: Insights From Genomics and Metabolomics Integration. | Shahin MH, Gong Y, McDonough CW, Rotroff DM, Beitelshees AL, Garrett TJ, Gums JG, Motsinger-Reif A, Chapman AB, Turner ST, Boerwinkle E, Frye RF, Fiehn O, Cooper-DeHoff RM, Kaddurah-Daouk R, Johnson JA | Hypertension (Dallas, Tex. : 1979) | 27381900 | Hypertension | 2016 Sep |
| Perinatal triphenyl phosphate exposure accelerates type 2 diabetes onset and increases adipose accumulation in UCD-type 2 diabetes mellitus rats. | Green AJ, Graham JL, Gonzalez EA, La Frano MR, Petropoulou SE, Park JS, Newman JW, Stanhope KL, Havel PJ, La Merrill MA | Reproductive toxicology (Elmsford, N.Y.) | 27421578 | Reprod Toxicol | 2017 Mar |
| Circulating levels of endocannabinoids and oxylipins altered by dietary lipids in older women are likely associated with previously identified gene targets. | Watkins BA, Kim J, Kenny A, Pedersen TL, Pappan KL, Newman JW | Biochimica et biophysica acta | 27452639 | Biochim Biophys Acta | 2016 Nov |
| Ingestion of the epoxide hydrolase inhibitor AUDA modulates immune responses of the mosquito, Culex quinquefasciatus during blood feeding. | Xu J, Morisseau C, Yang J, Lee KSS, Kamita SG, Hammock BD | Insect biochemistry and molecular biology | 27369469 | Insect Biochem Mol Biol | 2016 Sep |
| Association between plasma endocannabinoids and appetite in hemodialysis patients: A pilot study. | Friedman AN, Kim J, Kaiser S, Pedersen TL, Newman JW, Watkins BA | Nutrition research (New York, N.Y.) | 27333956 | Nutr Res | 2016 Jul |
| The urinary metabolomics profile of an Italian autistic children population and their unaffected siblings. | Noto A, Fanos V, Barberini L, Grapov D, Fattuoni C, Zaffanello M, Casanova A, Fenu G, De Giacomo A, De Angelis M, Moretti C, Papoff P, Ditonno R, Francavilla R | The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians | 25284177 | J Matern Fetal Neonatal Med | 2014 Oct |
| Top-down analysis of highly post-translationally modified peptides by Fourier transform ion cyclotron resonance mass spectrometry. | Guerrero A, Lerno L, Barile D, Lebrilla CB | Journal of the American Society for Mass Spectrometry | 25404158 | J Am Soc Mass Spectrom | 2015 Mar |
| Eosinophilic and Noneosinophilic Asthma. | Carr TF, Zeki AA, Kraft M | American journal of respiratory and critical care medicine | 28910134 | Am J Respir Crit Care Med | 2018 Jan 1 |
| Effects of atopic dermatitis and gender on sebum lipid mediator and fatty acid profiles. | Agrawal K, Hassoun LA, Foolad N, Borkowski K, Pedersen TL, Sivamani RK, Newman JW | Prostaglandins, leukotrienes, and essential fatty acids | 29886894 | Prostaglandins Leukot Essent Fatty Acids | 2018 Jul |
| Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa. | Phan J, Gallagher T, Oliver A, England WE, Whiteson K | FEMS microbiology letters | 29617986 | FEMS Microbiol Lett | 2018 May 1 |
| Abnormal lipoprotein oxylipins in metabolic syndrome and partial correction by omega-3 fatty acids. | Shearer GC, Borkowski K, Puumala SL, Harris WS, Pedersen TL, Newman JW | Prostaglandins, leukotrienes, and essential fatty acids | 29413356 | Prostaglandins Leukot Essent Fatty Acids | 2018 Jan |
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| Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival. | Fahrmann JF, Grapov D, Phinney BS, Stroble C, DeFelice BC, Rom W, Gandara DR, Zhang Y, Fiehn O, Pass H, Miyamoto S | Clinical proteomics | 27799870 | Clin Proteomics | 2016 |
| Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice. | Deol P, Fahrmann J, Yang J, Evans JR, Rizo A, Grapov D, Salemi M, Wanichthanarak K, Fiehn O, Phinney B, Hammock BD, Sladek FM | Scientific reports | 28970503 | Sci Rep | 2017 Oct 2 |
| Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets. | Barupal DK, Fiehn O | Scientific reports | 29109515 | Sci Rep | 2017 Nov 6 |
| Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients. | Wandro S, Carmody L, Gallagher T, LiPuma JJ, Whiteson K | mSystems | 29202048 | mSystems | 2017 Nov-Dec |
| Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis. | Kind T, Cho E, Park TD, Deng N, Liu Z, Lee T, Fiehn O, Kim J | Scientific reports | 27976711 | Sci Rep | 2016 Dec 15 |
| Lipoxygenase Activity Accelerates Programmed Spore Germination in Aspergillus fumigatus. | Fischer GJ, Bacon W, Yang J, Palmer JM, Dagenais T, Hammock BD, Keller NP | Frontiers in microbiology | 28536571 | Front Microbiol | 2017 |
| Active-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase. | Hvorecny KL, Bahl CD, Kitamura S, Lee KSS, Hammock BD, Morisseau C, Madden DR | Structure (London, England : 1993) | 28392259 | Structure | 2017 May 2 |
| Epimetabolites: discovering metabolism beyond building and burning. | Showalter MR, Cajka T, Fiehn O | Current opinion in chemical biology | 28213207 | Curr Opin Chem Biol | 2017 Feb |
| Prebiotic milk oligosaccharides prevent development of obese phenotype, impairment of gut permeability, and microbial dysbiosis in high fat-fed mice. | Hamilton MK, Ronveaux CC, Rust BM, Newman JW, Hawley M, Barile D, Mills DA, Raybould HE | American journal of physiology. Gastrointestinal and liver physiology | 28280143 | Am J Physiol Gastrointest Liver Physiol | 2017 May 1 |
| MS2Analyzer: A software for small molecule substructure annotations from accurate tandem mass spectra. | Ma Y, Kind T, Yang D, Leon C, Fiehn O | Analytical chemistry | 25263576 | Anal Chem | 2014 Nov 4 |
| Metabolomics insights into pathophysiological mechanisms of interstitial cystitis. | Fiehn O, Kim J | International neurourology journal | 25279237 | Int Neurourol J | 2014 Sep |
| The use of metabolomics in population-based research. | Su LJ, Fiehn O, Maruvada P, Moore SC, O'Keefe SJ, Wishart DS, Zanetti KA | Advances in nutrition (Bethesda, Md.) | 25398741 | Adv Nutr | 2014 Nov |
| Effects of soluble epoxide hydrolase deficiency on acute pancreatitis in mice. | Bettaieb A, Chahed S, Tabet G, Yang J, Morisseau C, Griffey S, Hammock BD, Haj FG | PloS one | 25402489 | PLoS One | 2014 |
| Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia. | Fahrmann J, Grapov D, Yang J, Hammock B, Fiehn O, Bell GI, Hara M | American journal of physiology. Endocrinology and metabolism | 25852003 | Am J Physiol Endocrinol Metab | 2015 Jun 1 |
| Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software. | Tsugawa H, Kind T, Nakabayashi R, Yukihira D, Tanaka W, Cajka T, Saito K, Fiehn O, Arita M | Analytical chemistry | 27419259 | Anal Chem | 2016 Aug 16 |
| An inhibitor of soluble epoxide hydrolase ameliorates diabetes-induced learning and memory impairment in rats. | Minaz N, Razdan R, Hammock BD, Goswami SK | Prostaglandins & other lipid mediators | 29751149 | Prostaglandins Other Lipid Mediat | 2018 May |
| Celecoxib use and circulating oxylipins in a colon polyp prevention trial. | Martinez JA, Yang J, Wertheim BC, Roe DJ, Schriewer A, Lance P, Alberts DS, Hammock BD, Thompson PA | PloS one | 29698447 | PLoS One | 2018 |
| Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. | Nagy-Szakal D, Barupal DK, Lee B, Che X, Williams BL, Kahn EJR, Ukaigwe JE, Bateman L, Klimas NG, Komaroff AL, Levine S, Montoya JG, Peterson DL, Levin B, Hornig M, Fiehn O, Lipkin WI | Scientific reports | 29968805 | Sci Rep | 2018 Jul 3 |
| Walnuts change lipoprotein composition suppressing TNFα-stimulated cytokine production by diabetic adipocyte. | Borkowski K, Yim SJ, Holt RR, Hackman RM, Keen CL, Newman JW, Shearer GC | The Journal of nutritional biochemistry | 31030167 | J Nutr Biochem | 2019 Jun |
| Application of Low-Cost, Easy-to-Use, Portable Biosensor Systems for Diagnosing Bladder Dysfunctions. | Myung NV, Jung S, Kim J | International neurourology journal | 30943698 | Int Neurourol J | 2019 Mar |
| Key Glycolytic Metabolites in Paralyzed Skeletal Muscle Are Altered Seven Days after Spinal Cord Injury in Mice. | Graham ZA, Siedlik JA, Harlow L, Sahbani K, Bauman WA, Tawfeek HA, Cardozo CP | Journal of neurotrauma | 30869558 | J Neurotrauma | 2019 Sep 15 |
| Infant Maturity at Birth Reveals Minor Differences in the Maternal Milk Metabolome in the First Month of Lactation. | Spevacek AR, Smilowitz JT, Chin EL, Underwood MA, German JB, Slupsky CM | The Journal of nutrition | 26041675 | J Nutr | 2015 Aug |
| Applications of Multiple Reaction Monitoring to Clinical Glycomics. | Ruhaak LR, Lebrilla CB | Chromatographia | 25892741 | Chromatographia | 2015 Mar 1 |
| Temporal metabolomic responses of cultured HepG2 liver cells to high fructose and high glucose exposures. | Meissen JK, Hirahatake KM, Adams SH, Fiehn O | Metabolomics : Official journal of the Metabolomic Society | 26190955 | Metabolomics | 2015 Jun 1 |
| Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics. | Vaniya A, Fiehn O | Trends in analytical chemistry : TRAC | 26213431 | Trends Analyt Chem | 2015 Jun 1 |
| Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry. | Cajka T, Fiehn O | Trends in analytical chemistry : TRAC | 25309011 | Trends Analyt Chem | 2014 Oct 1 |
| Different mechanisms of acute versus long-term antihypertensive effects of soluble epoxide hydrolase inhibition: studies in Cyp1a1-Ren-2 transgenic rats. | Sporková A, Jíchová S, Husková Z, Kopkan L, Nishiyama A, Hwang SH, Hammock BD, Imig JD, Kompanowska-Jezierska E, Sadowski J, Kramer HJ, Cervenka L | Clinical and experimental pharmacology & physiology | 25224811 | Clin Exp Pharmacol Physiol | 2014 Dec |
| Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue. | Ruhaak LR, Taylor SL, Stroble C, Nguyen UT, Parker EA, Song T, Lebrilla CB, Rom WN, Pass H, Kim K, Kelly K, Miyamoto S | Journal of proteome research | 26322380 | J Proteome Res | 2015 Nov 6 |
| Urinary metabolite profiling combined with computational analysis predicts interstitial cystitis-associated candidate biomarkers. | Wen H, Lee T, You S, Park SH, Song H, Eilber KS, Anger JT, Freeman MR, Park S, Kim J | Journal of proteome research | 25353990 | J Proteome Res | 2015 Jan 2 |
| Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma. | Lee DY, Kind T, Yoon YR, Fiehn O, Liu KH | Analytical and bioanalytical chemistry | 25171832 | Anal Bioanal Chem | 2014 Nov |
| Urinary metabolomics (GC-MS) reveals that low and high birth weight infants share elevated inositol concentrations at birth. | Barberini L, Noto A, Fattuoni C, Grapov D, Casanova A, Fenu G, Gaviano M, Carboni R, Ottonello G, Crisafulli M, Fanos V, Dessì A | The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians | 25284173 | J Matern Fetal Neonatal Med | 2014 Oct |
| Oral ibuprofen differentially affects plasma and sweat lipid mediator profiles in healthy adult males. | Agrawal K, Bosviel R, Piccolo BD, Newman JW | Prostaglandins & other lipid mediators | 29778785 | Prostaglandins Other Lipid Mediat | 2018 Jul |
| Gene deficiency and pharmacological inhibition of soluble epoxide hydrolase confers resilience to repeated social defeat stress. | Ren Q, Ma M, Ishima T, Morisseau C, Yang J, Wagner KM, Zhang JC, Yang C, Yao W, Dong C, Han M, Hammock BD, Hashimoto K | Proceedings of the National Academy of Sciences of the United States of America | 26976569 | Proc Natl Acad Sci U S A | 2016 Mar 29 |
| Metabolomics by Gas Chromatography-Mass Spectrometry: Combined Targeted and Untargeted Profiling. | Fiehn O | Current protocols in molecular biology | 27038389 | Curr Protoc Mol Biol | 2016 Apr 1 |
| Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS. | Ma Y, Tanaka N, Vaniya A, Kind T, Fiehn O | Journal of agricultural and food chemistry | 26698107 | J Agric Food Chem | 2016 Jan 20 |
| The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis. | Wandro S, Osborne S, Enriquez C, Bixby C, Arrieta A, Whiteson K | mSphere | 29875143 | mSphere | 2018 Jun 27 |
| Bile acids promote diethylnitrosamine-induced hepatocellular carcinoma via increased inflammatory signaling. | Sun L, Beggs K, Borude P, Edwards G, Bhushan B, Walesky C, Roy N, Manley MW Jr, Gunewardena S, O'Neil M, Li H, Apte U | American journal of physiology. Gastrointestinal and liver physiology | 27151938 | Am J Physiol Gastrointest Liver Physiol | 2016 Jul 1 |
| Era of the Fourth Industrial Revolution and the Urologists' Journey to Navigating Big Omics Data. | Kim J | International neurourology journal | 30068072 | Int Neurourol J | 2018 Jul |
| Diet high in linoleic acid dysregulates the intestinal endocannabinoid system and increases susceptibility to colitis in Mice. | Deol P, Ruegger P, Logan GD, Shawki A, Li J, Mitchell JD, Yu J, Piamthai V, Radi SH, Hasnain S, Borkowski K, Newman JW, McCole DF, Nair MG, Hsiao A, Borneman J, Sladek FM | Gut microbes | 37400966 | Gut Microbes | 2023 Jan-Dec |
| Metabolomics Reveals Altered Hepatic Bile Acids, Gut Microbiome Metabolites, and Cell Membrane Lipids Associated with Marginal Vitamin A Deficiency in a Mongolian Gerbil Model. | La Frano MR, Brito A, Johnson CM, Wilhelmson B, Gannon B, Fanter RK, Pedersen TL, Tanumihardjo SA, Newman JW | Molecular nutrition & food research | 32453876 | Mol Nutr Food Res | 2020 Jul |
| Alendronate-induced Perturbation of the Bone Proteome and Microenvironmental Pathophysiology. | Kim J, Yeon A, Parker SJ, Shahid M, Thiombane A, Cho E, You S, Emam H, Kim DG, Kim M | International journal of medical sciences | 34400895 | Int J Med Sci | 2021 |
| Genetic deficiency or pharmacological inhibition of soluble epoxide hydrolase ameliorates high fat diet-induced pancreatic β-cell dysfunction and loss. | Koike S, Hsu MF, Bettaieb A, Chu B, Matsumoto N, Morisseau C, Havel PJ, Huising MO, Hammock BD, Haj FG | Free radical biology & medicine | 34038767 | Free Radic Biol Med | 2021 Aug 20 |
| Ethnicity-specific alterations of plasma and hepatic lipidomic profiles are related to high NAFLD rate and severity in Hispanic Americans, a pilot study. | Mazi TA, Borkowski K, Newman JW, Fiehn O, Bowlus CL, Sarkar S, Matsukuma K, Ali MR, Kieffer DA, Wan YY, Stanhope KL, Havel PJ, Medici V | Free radical biology & medicine | 34182070 | Free Radic Biol Med | 2021 Aug 20 |
| Zinc treatment reverses and anti-Zn-regulated miRs suppress esophageal carcinomas in vivo. | Fong LY, Huebner K, Jing R, Smalley KJ, Brydges CR, Fiehn O, Farber JL, Croce CM | Proceedings of the National Academy of Sciences of the United States of America | 37155893 | Proc Natl Acad Sci U S A | 2023 May 16 |
| Anti-inflammatory effects of ω-3 polyunsaturated fatty acids and soluble epoxide hydrolase inhibitors in angiotensin-II-dependent hypertension. | Ulu A, Harris TR, Morisseau C, Miyabe C, Inoue H, Schuster G, Dong H, Iosif AM, Liu JY, Weiss RH, Chiamvimonvat N, Imig JD, Hammock BD | Journal of cardiovascular pharmacology | 23676336 | J Cardiovasc Pharmacol | 2013 Sep |
| Niemann-pick type C2 deficiency in human fibroblasts confers robust and selective activation of prostaglandin E2 biosynthesis. | Frolov A, Dong H, Jiang M, Yang L, Cook EC, Matnani R, Hammock BD, Crofford LJ | The Journal of biological chemistry | 23814065 | J Biol Chem | 2013 Aug 16 |
| Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus. | Smilowitz JT, Totten SM, Huang J, Grapov D, Durham HA, Lammi-Keefe CJ, Lebrilla C, German JB | The Journal of nutrition | 24047700 | J Nutr | 2013 Dec |
| Individual variation in lipidomic profiles of healthy subjects in response to omega-3 Fatty acids. | Nording ML, Yang J, Georgi K, Hegedus Karbowski C, German JB, Weiss RH, Hogg RJ, Trygg J, Hammock BD, Zivkovic AM | PloS one | 24204640 | PLoS One | 2013 |
| Pharmacometabolomic signature of ataxia SCA1 mouse model and lithium effects. | Perroud B, Jafar-Nejad P, Wikoff WR, Gatchel JR, Wang L, Barupal DK, Crespo-Barreto J, Fiehn O, Zoghbi HY, Kaddurah-Daouk R | PloS one | 23936457 | PLoS One | 2013 |
| Increase of EPA-derived hydroxy, epoxy and dihydroxy fatty acid levels in human plasma after a single dose of long-chain omega-3 PUFA. | Schuchardt JP, Schneider I, Willenberg I, Yang J, Hammock BD, Hahn A, Schebb NH | Prostaglandins & other lipid mediators | 24667634 | Prostaglandins Other Lipid Mediat | 2014 Jun |
| Frataxin deficiency increases cyclooxygenase 2 and prostaglandins in cell and animal models of Friedreich's ataxia. | Hayashi G, Shen Y, Pedersen TL, Newman JW, Pook M, Cortopassi G | Human molecular genetics | 25104852 | Hum Mol Genet | 2014 Dec 20 |
| Comparison of the effects of long-chain omega-3 fatty acid supplementation on plasma levels of free and esterified oxylipins. | Schebb NH, Ostermann AI, Yang J, Hammock BD, Hahn A, Schuchardt JP | Prostaglandins & other lipid mediators | 24880049 | Prostaglandins Other Lipid Mediat | 2014 Oct |
| Enhanced detection and identification in metabolomics by use of LC-MS/MS untargeted analysis in combination with gas-phase fractionation. | Calderón-Santiago M, Priego-Capote F, Luque de Castro MD | Analytical chemistry | 24992377 | Anal Chem | 2014 Aug 5 |
| Microbial metabolomics in open microscale platforms. | Barkal LJ, Theberge AB, Guo CJ, Spraker J, Rappert L, Berthier J, Brakke KA, Wang CCC, Beebe DJ, Keller NP, Berthier E | Nature communications | 26842393 | Nat Commun | 2016 Feb 4 |
| An in silico MS/MS library for automatic annotation of novel FAHFA lipids. | Ma Y, Kind T, Vaniya A, Gennity I, Fahrmann JF, Fiehn O | Journal of cheminformatics | 26579213 | J Cheminform | 2015 |
| Site-specific glycosylation of secretory immunoglobulin A from human colostrum. | Huang J, Guerrero A, Parker E, Strum JS, Smilowitz JT, German JB, Lebrilla CB | Journal of proteome research | 25629924 | J Proteome Res | 2015 Mar 6 |
| Acylcarnitines as markers of exercise-associated fuel partitioning, xenometabolism, and potential signals to muscle afferent neurons. | Zhang J, Light AR, Hoppel CL, Campbell C, Chandler CJ, Burnett DJ, Souza EC, Casazza GA, Hughen RW, Keim NL, Newman JW, Hunter GR, Fernandez JR, Garvey WT, Harper ME, Fiehn O, Adams SH | Experimental physiology | 27730694 | Exp Physiol | 2017 Jan 1 |
| Intake of farmed Atlantic salmon fed soybean oil increases hepatic levels of arachidonic acid-derived oxylipins and ceramides in mice. | Midtbø LK, Borkowska AG, Bernhard A, Rønnevik AK, Lock EJ, Fitzgerald ML, Torstensen BE, Liaset B, Brattelid T, Pedersen TL, Newman JW, Kristiansen K, Madsen L | The Journal of nutritional biochemistry | 25776459 | J Nutr Biochem | 2015 Jun |
| MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. | Tsugawa H, Cajka T, Kind T, Ma Y, Higgins B, Ikeda K, Kanazawa M, VanderGheynst J, Fiehn O, Arita M | Nature methods | 25938372 | Nat Methods | 2015 Jun |
| Mass spectral fragmentation of trimethylsilylated small molecules. | Lai Z, Fiehn O | Mass spectrometry reviews | 27580014 | Mass Spectrom Rev | 2018 May |
| Multiplatform Mass Spectrometry-Based Approach Identifies Extracellular Glycolipids of the Yeast Rhodotorula babjevae UCDFST 04-877. | Cajka T, Garay LA, Sitepu IR, Boundy-Mills KL, Fiehn O | Journal of natural products | 27669091 | J Nat Prod | 2016 Oct 28 |
| Bioactive lipid profiling reveals drug target engagement of a soluble epoxide hydrolase inhibitor in a murine model of tobacco smoke exposure. | Nording ML, Yang J, Hoang L, Zamora V, Uyeminami D, Espiritu I, Pinkerton KE, Hammock BD, Luria A | Journal of metabolomics | 27076918 | J Metabolomics | 2015 Apr |
| Gestational Hypoxia and Programing of Lung Metabolism. | Rood K, Lopez V, La Frano MR, Fiehn O, Zhang L, Blood AB, Wilson SM | Frontiers in physiology | 31849704 | Front Physiol | 2019 |
| Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. | Blaženović I, Kind T, Ji J, Fiehn O | Metabolites | 29748461 | Metabolites | 2018 May 10 |
| Exercise plasma metabolomics and xenometabolomics in obese, sedentary, insulin-resistant women: impact of a fitness and weight loss intervention. | Grapov D, Fiehn O, Campbell C, Chandler CJ, Burnett DJ, Souza EC, Casazza GA, Keim NL, Newman JW, Hunter GR, Fernandez JR, Garvey WT, Hoppel CL, Harper ME, Adams SH | American journal of physiology. Endocrinology and metabolism | 31526287 | Am J Physiol Endocrinol Metab | 2019 Dec 1 |
| Noninvasive profiling of sweat-derived lipid mediators for cutaneous research. | Agrawal K, Sivamani RK, Newman JW | Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) | 30030941 | Skin Res Technol | 2019 Jan |
| Sex-associated differences in baseline urinary metabolites of healthy adults. | Fan S, Yeon A, Shahid M, Anger JT, Eilber KS, Fiehn O, Kim J | Scientific reports | 30089834 | Sci Rep | 2018 Aug 8 |
| MeCP2 isoform e1 mutant mice recapitulate motor and metabolic phenotypes of Rett syndrome. | Vogel Ciernia A, Yasui DH, Pride MC, Durbin-Johnson B, Noronha AB, Chang A, Knotts TA, Rutkowsky JR, Ramsey JJ, Crawley JN, LaSalle JM | Human molecular genetics | 30137367 | Hum Mol Genet | 2018 Dec 1 |
| Centromere protein F (CENPF), a microtubule binding protein, modulates cancer metabolism by regulating pyruvate kinase M2 phosphorylation signaling. | Shahid M, Lee MY, Piplani H, Andres AM, Zhou B, Yeon A, Kim M, Kim HL, Kim J | Cell cycle (Georgetown, Tex.) | 30526248 | Cell Cycle | 2018 |
| Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry. | Kind T, Fiehn O | Phytochemistry letters | 29225718 | Phytochem Lett | 2017 Sep |
| Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection. | Chen P, Reiter T, Huang B, Kong N, Weimer BC | Pathogens (Basel, Switzerland) | 29257110 | Pathogens | 2017 Dec 19 |
| Impact of diabetes on male sexual function in streptozotocin-induced diabetic rats: Protective role of soluble epoxide hydrolase inhibitor. | Minaz N, Razdan R, Hammock BD, Mujwar S, Goswami SK | Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie | 31102913 | Biomed Pharmacother | 2019 Jul |
| Draft Genome Sequences of Salmonella enterica Serovar Typhimurium LT2 with Deleted Chitinases That Are Emerging Virulence Factors. | Arabyan N, Huang BC, Weimer BC | Genome announcements | 28774970 | Genome Announc | 2017 Aug 3 |
| Postprandial effect to decrease soluble epoxide hydrolase activity: roles of insulin and gut microbiota. | Yang J, Oh YT, Wan D, Watanabe RM, Hammock BD, Youn JH | The Journal of nutritional biochemistry | 28863368 | J Nutr Biochem | 2017 Nov |
| Cytochrome P450 monooxygenase lipid metabolites are significant second messengers in the resolution of choroidal neovascularization. | Hasegawa E, Inafuku S, Mulki L, Okunuki Y, Yanai R, Smith KE, Kim CB, Klokman G, Bielenberg DR, Puli N, Falck JR, Husain D, Miller JW, Edin ML, Zeldin DC, Lee KSS, Hammock BD, Schunck WH, Connor KM | Proceedings of the National Academy of Sciences of the United States of America | 28827330 | Proc Natl Acad Sci U S A | 2017 Sep 5 |
| Comparative analysis of obesity-related cardiometabolic and renal biomarkers in human plasma and serum. | Rajan MR, Sotak M, Barrenäs F, Shen T, Borkowski K, Ashton NJ, Biörserud C, Lindahl TL, Ramström S, Schöll M, Lindahl P, Fiehn O, Newman JW, Perkins R, Wallenius V, Lange S, Börgeson E | Scientific reports | 31659186 | Sci Rep | 2019 Oct 28 |
| Using MS-FINDER for identifying 19 natural products in the CASMI 2016 contest. | Vaniya A, Samra SN, Palazoglu M, Tsugawa H, Fiehn O | Phytochemistry letters | 31576201 | Phytochem Lett | 2017 Sep |
| Utilizing machine learning to discern hidden clinical values from big data in urology. | Kim WJ, Jin P, Kim WH, Kim J | Investigative and clinical urology | 32377598 | Investig Clin Urol | 2020 May |
| Celecoxib Does Not Protect against Fibrosis and Inflammation in a Carbon Tetrachloride-Induced Model of Liver Injury. | Harris TR, Kodani S, Rand AA, Yang J, Imai DM, Hwang SH, Hammock BD | Molecular pharmacology | 29844231 | Mol Pharmacol | 2018 Aug |
| Abrogation of esophageal carcinoma development in miR-31 knockout rats. | Fong LY, Taccioli C, Palamarchuk A, Tagliazucchi GM, Jing R, Smalley KJ, Fan S, Altemus J, Fiehn O, Huebner K, Farber JL, Croce CM | Proceedings of the National Academy of Sciences of the United States of America | 32123074 | Proc Natl Acad Sci U S A | 2020 Mar 17 |
| Multiassay nutritional metabolomics profiling of low vitamin A status versus adequacy is characterized by reduced plasma lipid mediators among lactating women in the Philippines: A pilot study. | Johnson CM, Rosario R, Brito A, Agrawal K, Fanter R, Lietz G, Haskell M, Engle-Stone R, Newman JW, La Frano MR | Nutrition research (New York, N.Y.) | 35732076 | Nutr Res | 2022 Aug |
| Lipoxins reduce obesity-induced adipose tissue inflammation in 3D-cultured human adipocytes and explant cultures. | Soták M, Rajan MR, Clark M, Harms M, Rani A, Kraft JD, Tandio D, Shen T, Borkowski K, Fiehn O, Newman JW, Quiding-Järbrink M, Biörserud C, Apelgren P, Staalesen T, Hagberg CE, Boucher J, Wallenius V, Lange S, Börgeson E | iScience | 35789845 | iScience | 2022 Jul 15 |
| Gestational long-term hypoxia induces metabolomic reprogramming and phenotypic transformations in fetal sheep pulmonary arteries. | Leslie E, Lopez V, Anti NAO, Alvarez R, Kafeero I, Welsh DG, Romero M, Kaushal S, Johnson CM, Bosviel R, Blaženović I, Song R, Brito A, Frano MR, Zhang L, Newman JW, Fiehn O, Wilson SM | American journal of physiology. Lung cellular and molecular physiology | 33624555 | Am J Physiol Lung Cell Mol Physiol | 2021 May 1 |
| Effects of inflammation and soluble epoxide hydrolase inhibition on oxylipin composition of very low-density lipoproteins in isolated perfused rat livers. | Walker RE, Savinova OV, Pedersen TL, Newman JW, Shearer GC | Physiological reports | 33625776 | Physiol Rep | 2021 Feb |
| Glutamate enrichment as new diagnostic opportunity in breast cancer. | Budczies J, Pfitzner BM, Györffy B, Winzer KJ, Radke C, Dietel M, Fiehn O, Denkert C | International journal of cancer | 25155347 | Int J Cancer | 2015 Apr 1 |
| Rapid-throughput glycomics applied to human milk oligosaccharide profiling for large human studies. | Totten SM, Wu LD, Parker EA, Davis JC, Hua S, Stroble C, Ruhaak LR, Smilowitz JT, German JB, Lebrilla CB | Analytical and bioanalytical chemistry | 25358913 | Anal Bioanal Chem | 2014 Dec |
| Identifying individual differences of fluoxetine response in juvenile rhesus monkeys by metabolite profiling. | He Y, Hogrefe CE, Grapov D, Palazoglu M, Fiehn O, Turck CW, Golub MS | Translational psychiatry | 25369145 | Transl Psychiatry | 2014 Nov 4 |
| Immune checkpoint blockade therapy for bladder cancer treatment. | Kim J | Investigative and clinical urology | 27326412 | Investig Clin Urol | 2016 Jun |
| Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites. | Gao B, Gallagher T, Zhang Y, Elbadawi-Sidhu M, Lai Z, Fiehn O, Whiteson KL | mSphere | 29695623 | mSphere | 2018 Apr 25 |
| Pharmacometabolomic signature links simvastatin therapy and insulin resistance. | Elbadawi-Sidhu M, Baillie RA, Zhu H, Chen YI, Goodarzi MO, Rotter JI, Krauss RM, Fiehn O, Kaddurah-Daouk R | Metabolomics : Official journal of the Metabolomic Society | 29732238 | Metabolomics | 2017 Jan |
| Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH. | Gallagher T, Phan J, Oliver A, Chase AB, England WE, Wandro S, Hendrickson C, Riedel SF, Whiteson K | Journal of bacteriology | 30642989 | J Bacteriol | 2019 Apr 1 |
| Skeletal muscle interstitial fluid metabolomics at rest and associated with an exercise bout: application in rats and humans. | Zhang J, Bhattacharyya S, Hickner RC, Light AR, Lambert CJ, Gale BK, Fiehn O, Adams SH | American journal of physiology. Endocrinology and metabolism | 30398905 | Am J Physiol Endocrinol Metab | 2019 Jan 1 |
| Quick overview of diagnostic kits and smartphone apps for urologists during the COVID-19 pandemic: a narrative review. | Park H, Jin P, Jung S, Kim J | Translational andrology and urology | 33718094 | Transl Androl Urol | 2021 Feb |
| Dietary DHA reduces downstream endocannabinoid and inflammatory gene expression and epididymal fat mass while improving aspects of glucose use in muscle in C57BL/6J mice. | Kim J, Carlson ME, Kuchel GA, Newman JW, Watkins BA | International journal of obesity (2005) | 26219414 | Int J Obes (Lond) | 2016 Jan |
| Assess the expression of ubiquitin specific protease USP2a for bladder cancer diagnosis. | Jeong P, Ha YS, Yun SJ, Yoon HY, Freeman MR, Kim J, Kim WJ | BMC urology | 26250800 | BMC Urol | 2015 Aug 7 |
| Diacetylspermine Is a Novel Prediagnostic Serum Biomarker for Non-Small-Cell Lung Cancer and Has Additive Performance With Pro-Surfactant Protein B. | Wikoff WR, Hanash S, DeFelice B, Miyamoto S, Barnett M, Zhao Y, Goodman G, Feng Z, Gandara D, Fiehn O, Taguchi A | Journal of clinical oncology : official journal of the American Society of Clinical Oncology | 26282655 | J Clin Oncol | 2015 Nov 20 |
| Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods. | Abate-Pella D, Freund DM, Ma Y, Simón-Manso Y, Hollender J, Broeckling CD, Huhman DV, Krokhin OV, Stoll DR, Hegeman AD, Kind T, Fiehn O, Schymanski EL, Prenni JE, Sumner LW, Boswell PG | Journal of chromatography. A | 26292625 | J Chromatogr A | 2015 Sep 18 |
| Molecular Mechanisms and New Treatment Paradigm for Atrial Fibrillation. | Sirish P, Li N, Timofeyev V, Zhang XD, Wang L, Yang J, Lee KS, Bettaieb A, Ma SM, Lee JH, Su D, Lau VC, Myers RE, Lieu DK, López JE, Young JN, Yamoah EN, Haj F, Ripplinger CM, Hammock BD, Chiamvimonvat N | Circulation. Arrhythmia and electrophysiology | 27162031 | Circ Arrhythm Electrophysiol | 2016 May |
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| Metabolomics of tomato xylem sap during bacterial wilt reveals Ralstonia solanacearum produces abundant putrescine, a metabolite that accelerates wilt disease. | Lowe-Power TM, Hendrich CG, von Roepenack-Lahaye E, Li B, Wu D, Mitra R, Dalsing BL, Ricca P, Naidoo J, Cook D, Jancewicz A, Masson P, Thomma B, Lahaye T, Michael AJ, Allen C | Environmental microbiology | 29215193 | Environ Microbiol | 2018 Apr |
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| Sirtuin 5 levels are limiting in preserving cardiac function and suppressing fibrosis in response to pressure overload. | Guo AH, Baliira R, Skinner ME, Kumar S, Andren A, Zhang L, Goldsmith RS, Michan S, Davis NJ, Maccani MW, Day SM, Sinclair DA, Brody MJ, Lyssiotis CA, Stein AB, Lombard DB | Scientific reports | 35851833 | Sci Rep | 2022 Jul 18 |
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| The MPLEx Protocol for Multi-omic Analyses of Soil Samples. | Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA 3rd, Roy Chowdhury T, Kyle JE, Kim YM, Smith RD, Metz TO, Jansson JK, Baker ES | Journal of visualized experiments : JoVE | 29912205 | J Vis Exp | 2018 May 30 |
| Surprising impact of remote groups on the folding--unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. | Liu R, Chen S, Baker ES, Smith RD, Zeng XC, Gong B | Chemical communications (Cambridge, England) | 26830456 | Chem Commun (Camb) | 2016 Mar 7 |
| An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies. | Bilbao A, Gibbons BC, Slysz GW, Crowell KL, Monroe ME, Ibrahim YM, Smith RD, Payne SH, Baker ES | International journal of mass spectrometry | 29706793 | Int J Mass Spectrom | 2018 Apr |
| Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry. | Baker ES, Burnum-Johnson KE, Jacobs JM, Diamond DL, Brown RN, Ibrahim YM, Orton DJ, Piehowski PD, Purdy DE, Moore RJ, Danielson WF 3rd, Monroe ME, Crowell KL, Slysz GW, Gritsenko MA, Sandoval JD, Lamarche BL, Matzke MM, Webb-Robertson BJ, Simons BC, McMahon BJ, Bhattacharya R, Perkins JD, Carithers RL Jr, Strom S, Self SG, Katze MG, Anderson GA, Smith RD | Molecular & cellular proteomics : MCP | 24403597 | Mol Cell Proteomics | 2014 Apr |
| Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements. | Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH | Journal of the American Society for Mass Spectrometry | 24796262 | J Am Soc Mass Spectrom | 2014 Dec |
| High Resolution Separations and Improved Ion Production and Transmission in Metabolomics. | Metz TO, Page JS, Baker ES, Tang K, Ding J, Shen Y, Smith RD | Trends in analytical chemistry : TRAC | 19255623 | Trends Analyt Chem | 2008 Mar |
| Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations. | Chouinard CD, Nagy G, Webb IK, Garimella SVB, Baker ES, Ibrahim YM, Smith RD | Analytical chemistry | 30102518 | Anal Chem | 2018 Sep 18 |
| Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses. | Zheng X, Zhang X, Schocker NS, Renslow RS, Orton DJ, Khamsi J, Ashmus RA, Almeida IC, Tang K, Costello CE, Smith RD, Michael K, Baker ES | Analytical and bioanalytical chemistry | 27604268 | Anal Bioanal Chem | 2017 Jan |
| Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry. | Kyle JE, Aly N, Zheng X, Burnum-Johnson KE, Smith RD, Baker ES | Bioanalysis | 29494212 | Bioanalysis | 2018 Mar 1 |
| Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go? | Metz TO, Baker ES, Schymanski EL, Renslow RS, Thomas DG, Causon TJ, Webb IK, Hann S, Smith RD, Teeguarden JG | Bioanalysis | 27921453 | Bioanalysis | 2017 Jan |
| Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples. | Burnum-Johnson KE, Zheng X, Dodds JN, Ash J, Fourches D, Nicora CD, Wendler JP, Metz TO, Waters KM, Jansson JK, Smith RD, Baker ES | Trends in analytical chemistry : TRAC | 31798197 | Trends Analyt Chem | 2019 Jul |
| Enhancing bottom-up and top-down proteomic measurements with ion mobility separations. | Baker ES, Burnum-Johnson KE, Ibrahim YM, Orton DJ, Monroe ME, Kelly RT, Moore RJ, Zhang X, Théberge R, Costello CE, Smith RD | Proteomics | 26046661 | Proteomics | 2015 Aug |
| Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer. | Ibrahim YM, Baker ES, Danielson WF 3rd, Norheim RV, Prior DC, Anderson GA, Belov ME, Smith RD | International journal of mass spectrometry | 26185483 | Int J Mass Spectrom | 2015 Feb 1 |
| Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry. | Kyle JE, Zhang X, Weitz KK, Monroe ME, Ibrahim YM, Moore RJ, Cha J, Sun X, Lovelace ES, Wagoner J, Polyak SJ, Metz TO, Dey SK, Smith RD, Burnum-Johnson KE, Baker ES | The Analyst | 26734689 | Analyst | 2016 Mar 7 |
| Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses. | Zheng X, Wojcik R, Zhang X, Ibrahim YM, Burnum-Johnson KE, Orton DJ, Monroe ME, Moore RJ, Smith RD, Baker ES | Annual review of analytical chemistry (Palo Alto, Calif.) | 28301728 | Annu Rev Anal Chem (Palo Alto Calif) | 2017 Jun 12 |
| Online Ozonolysis Combined with Ion Mobility-Mass Spectrometry Provides a New Platform for Lipid Isomer Analyses. | Poad BLJ, Zheng X, Mitchell TW, Smith RD, Baker ES, Blanksby SJ | Analytical chemistry | 29220163 | Anal Chem | 2018 Jan 16 |
| PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association. | Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO | Bioinformatics (Oxford, England) | 28505286 | Bioinformatics | 2017 Sep 1 |
| A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. | Zheng X, Aly NA, Zhou Y, Dupuis KT, Bilbao A, Paurus VL, Orton DJ, Wilson R, Payne SH, Smith RD, Baker ES | Chemical science | 29568436 | Chem Sci | 2017 Nov 1 |
| Improving ion mobility measurement sensitivity by utilizing helium in an ion funnel trap. | Ibrahim YM, Garimella SV, Tolmachev AV, Baker ES, Smith RD | Analytical chemistry | 24786390 | Anal Chem | 2014 Jun 3 |
| Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry. | Crowell KL, Baker ES, Payne SH, Ibrahim YM, Monroe ME, Slysz GW, LaMarche BL, Petyuk VA, Piehowski PD, Danielson WF 3rd, Anderson GA, Smith RD | International journal of mass spectrometry | 25089116 | Int J Mass Spectrom | 2013 Nov 15 |
| The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates. | Khadempour L, Burnum-Johnson KE, Baker ES, Nicora CD, Webb-Robertson BM, White RA 3rd, Monroe ME, Huang EL, Smith RD, Currie CR | Molecular ecology | 27696597 | Mol Ecol | 2016 Nov |
| A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements. | Orton DJ, Tfaily MM, Moore RJ, LaMarche BL, Zheng X, Fillmore TL, Chu RK, Weitz KK, Monroe ME, Kelly RT, Smith RD, Baker ES | Analytical chemistry | 29161511 | Anal Chem | 2018 Jan 2 |
| Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches. | Zheng X, Smith RD, Baker ES | Current opinion in chemical biology | 29223060 | Curr Opin Chem Biol | 2018 Feb |
| Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry. | Zheng X, Deng L, Baker ES, Ibrahim YM, Petyuk VA, Smith RD | Chemical communications (Cambridge, England) | 28654112 | Chem Commun (Camb) | 2017 Jul 11 |
| Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry. | Zheng X, Smith FB, Aly NA, Cai J, Smith RD, Patterson AD, Baker ES | Analytical and bioanalytical chemistry | 31098744 | Anal Bioanal Chem | 2019 Jul |
| An Interlaboratory Evaluation of Drift Tube Ion Mobility-Mass Spectrometry Collision Cross Section Measurements. | Stow SM, Causon TJ, Zheng X, Kurulugama RT, Mairinger T, May JC, Rennie EE, Baker ES, Smith RD, McLean JA, Hann S, Fjeldsted JC | Analytical chemistry | 28763190 | Anal Chem | 2017 Sep 5 |
| Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform. | Cong Y, Katipamula S, Trader CD, Orton DJ, Geng T, Baker ES, Kelly RT | Lab on a chip | 27009517 | Lab Chip | 2016 Apr 26 |
| Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations. | Nagy G, Chouinard CD, Attah IK, Webb IK, Garimella SVB, Ibrahim YM, Baker ES, Smith RD | Electrophoresis | 30168603 | Electrophoresis | 2018 Dec |
| Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. | MacLean BX, Pratt BS, Egertson JD, MacCoss MJ, Smith RD, Baker ES | Journal of the American Society for Mass Spectrometry | 30047074 | J Am Soc Mass Spectrom | 2018 Nov |
| LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. | Crowell KL, Slysz GW, Baker ES, LaMarche BL, Monroe ME, Ibrahim YM, Payne SH, Anderson GA, Smith RD | Bioinformatics (Oxford, England) | 24008421 | Bioinformatics | 2013 Nov 1 |
| Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging. | Burnum-Johnson KE, Baker ES, Metz TO | Placenta | 28392013 | Placenta | 2017 Dec |
| Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus. | Cha J, Burnum-Johnson KE, Bartos A, Li Y, Baker ES, Tilton SC, Webb-Robertson BJ, Piehowski PD, Monroe ME, Jegga AG, Murata S, Hirota Y, Dey SK | The Journal of biological chemistry | 25931120 | J Biol Chem | 2015 Jun 12 |
| Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations. | Wojcik R, Webb IK, Deng L, Garimella SV, Prost SA, Ibrahim YM, Baker ES, Smith RD | International journal of molecular sciences | 28106768 | Int J Mol Sci | 2017 Jan 18 |
| Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform. | Ibrahim YM, Garimella SV, Prost SA, Wojcik R, Norheim RV, Baker ES, Rusyn I, Smith RD | Analytical chemistry | 28193022 | Anal Chem | 2016 Dec 20 |
| Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites. | Zheng X, Dupuis KT, Aly NA, Zhou Y, Smith FB, Tang K, Smith RD, Baker ES | Analytica chimica acta | 30292301 | Anal Chim Acta | 2018 Dec 11 |
| SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids. | Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, Blackwell AE, Swinford G, Sausen J, Kurulugama RT, Eno N, Darland E, Stafford G, Fjeldsted J, Metz TO, Teeguarden JG, Smith RD, Baker ES | Clinical mass spectrometry (Del Mar, Calif.) | 29276770 | Clin Mass Spectrom | 2016 Dec |
| From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem. | Khadempour L, Kyle JE, Webb-Robertson BM, Nicora CD, Smith FB, Smith RD, Lipton MS, Currie CR, Baker ES, Burnum-Johnson KE | mSystems | 33758033 | mSystems | 2021 Mar 23 |
| Metabolomics: an essential tool to understand the function of peroxisome proliferator-activated receptor alpha. | Montanez JE, Peters JM, Correll JB, Gonzalez FJ, Patterson AD | Toxicologic pathology | 23197196 | Toxicol Pathol | 2013 Feb |
| Metabolomics Reveals that Aryl Hydrocarbon Receptor Activation by Environmental Chemicals Induces Systemic Metabolic Dysfunction in Mice. | Zhang L, Hatzakis E, Nichols RG, Hao R, Correll J, Smith PB, Chiaro CR, Perdew GH, Patterson AD | Environmental science & technology | 26023891 | Environ Sci Technol | 2015 Jul 7 |
| Quantitative analysis of purine nucleotides indicates that purinosomes increase de novo purine biosynthesis. | Zhao H, Chiaro CR, Zhang L, Smith PB, Chan CY, Pedley AM, Pugh RJ, French JB, Patterson AD, Benkovic SJ | The Journal of biological chemistry | 25605736 | J Biol Chem | 2015 Mar 13 |
| An Intestinal Microbiota-Farnesoid X Receptor Axis Modulates Metabolic Disease. | Gonzalez FJ, Jiang C, Patterson AD | Gastroenterology | 27639801 | Gastroenterology | 2016 Nov |
| The aryl hydrocarbon receptor as a moderator of host-microbiota communication. | Zhang L, Nichols RG, Patterson AD | Current opinion in toxicology | 29527582 | Curr Opin Toxicol | 2017 Feb |
| A metabolomics investigation of non-genotoxic carcinogenicity in the rat. | Ament Z, Waterman CL, West JA, Waterfield C, Currie RA, Wright J, Griffin JL | Journal of proteome research | 24161236 | J Proteome Res | 2013 Dec 6 |
| A Comprehensive UHPLC Ion Mobility Quadrupole Time-of-Flight Method for Profiling and Quantification of Eicosanoids, Other Oxylipins, and Fatty Acids. | Hinz C, Liggi S, Mocciaro G, Jung S, Induruwa I, Pereira M, Bryant CE, Meckelmann SW, O'Donnell VB, Farndale RW, Fjeldsted J, Griffin JL | Analytical chemistry | 31074960 | Anal Chem | 2019 Jul 2 |
| Interplay Between the Host, the Human Microbiome, and Drug Metabolism. | Nichols RG, Peters JM, Patterson AD | Human genomics | 31186074 | Hum Genomics | 2019 Jun 11 |
| Intestine farnesoid X receptor agonist and the gut microbiota activate G-protein bile acid receptor-1 signaling to improve metabolism. | Pathak P, Xie C, Nichols RG, Ferrell JM, Boehme S, Krausz KW, Patterson AD, Gonzalez FJ, Chiang JYL | Hepatology (Baltimore, Md.) | 29486523 | Hepatology | 2018 Oct |
| Towards metabolic biomarkers of insulin resistance and type 2 diabetes: progress from the metabolome. | Roberts LD, Koulman A, Griffin JL | The lancet. Diabetes & endocrinology | 24622670 | Lancet Diabetes Endocrinol | 2014 Jan |
| Antioxidant Drug Tempol Promotes Functional Metabolic Changes in the Gut Microbiota. | Cai J, Zhang L, Jones RA, Correll JB, Hatzakis E, Smith PB, Gonzalez FJ, Patterson AD | Journal of proteome research | 26696396 | J Proteome Res | 2016 Feb 5 |
| Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity. | Cai J, Nichols RG, Koo I, Kalikow ZA, Zhang L, Tian Y, Zhang J, Smith PB, Patterson AD | mSystems | 30417115 | mSystems | 2018 Nov-Dec |
| LC-MS-based metabolomics: an update. | Fang ZZ, Gonzalez FJ | Archives of toxicology | 24710571 | Arch Toxicol | 2014 Aug |
| Structural and Functional Analysis of the Gut Microbiome for Toxicologists. | Nichols RG, Cai J, Murray IA, Koo I, Smith PB, Perdew GH, Patterson AD | Current protocols in toxicology | 30230220 | Curr Protoc Toxicol | 2018 Nov |
| Aryl hydrocarbon receptor ligands in cancer: friend and foe. | Murray IA, Patterson AD, Perdew GH | Nature reviews. Cancer | 25568920 | Nat Rev Cancer | 2014 Dec |
| Does our gut microbiome predict cardiovascular risk? A review of the evidence from metabolomics. | Griffin JL, Wang X, Stanley E | Circulation. Cardiovascular genetics | 25691688 | Circ Cardiovasc Genet | 2015 Feb |
| Intestinal farnesoid X receptor signaling promotes nonalcoholic fatty liver disease. | Jiang C, Xie C, Li F, Zhang L, Nichols RG, Krausz KW, Cai J, Qi Y, Fang ZZ, Takahashi S, Tanaka N, Desai D, Amin SG, Albert I, Patterson AD, Gonzalez FJ | The Journal of clinical investigation | 25500885 | J Clin Invest | 2015 Jan |
| Lipid metabolism and lipophagy in cancer. | Maan M, Peters JM, Dutta M, Patterson AD | Biochemical and biophysical research communications | 29438712 | Biochem Biophys Res Commun | 2018 Oct 7 |
| Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota. | Li G, Xie C, Lu S, Nichols RG, Tian Y, Li L, Patel D, Ma Y, Brocker CN, Yan T, Krausz KW, Xiang R, Gavrilova O, Patterson AD, Gonzalez FJ | Cell metabolism | 28918936 | Cell Metab | 2017 Oct 3 |
| Crucial role of macrophage selenoproteins in experimental colitis. | Kaushal N, Kudva AK, Patterson AD, Chiaro C, Kennett MJ, Desai D, Amin S, Carlson BA, Cantorna MT, Prabhu KS | Journal of immunology (Baltimore, Md. : 1950) | 25187657 | J Immunol | 2014 Oct 1 |
| Kernel approaches for differential expression analysis of mass spectrometry-based metabolomics data. | Zhan X, Patterson AD, Ghosh D | BMC bioinformatics | 25887233 | BMC Bioinformatics | 2015 Mar 11 |
| Metabolomics Reveals Aryl Hydrocarbon Receptor Activation Induces Liver and Mammary Gland Metabolic Dysfunction in Lactating Mice. | Belton KR, Tian Y, Zhang L, Anitha M, Smith PB, Perdew GH, Patterson AD | Journal of proteome research | 29521512 | J Proteome Res | 2018 Apr 6 |
| Microbiota-Dependent Hepatic Lipogenesis Mediated by Stearoyl CoA Desaturase 1 (SCD1) Promotes Metabolic Syndrome in TLR5-Deficient Mice. | Singh V, Chassaing B, Zhang L, San Yeoh B, Xiao X, Kumar M, Baker MT, Cai J, Walker R, Borkowski K, Harvatine KJ, Singh N, Shearer GC, Ntambi JM, Joe B, Patterson AD, Gewirtz AT, Vijay-Kumar M | Cell metabolism | 26525535 | Cell Metab | 2015 Dec 1 |
| PPAR-pan activation induces hepatic oxidative stress and lipidomic remodelling. | Ament Z, West JA, Stanley E, Ashmore T, Roberts LD, Wright J, Nicholls AW, Griffin JL | Free radical biology & medicine | 26654758 | Free Radic Biol Med | 2016 Jun |
| Intestine-selective farnesoid X receptor inhibition improves obesity-related metabolic dysfunction. | Jiang C, Xie C, Lv Y, Li J, Krausz KW, Shi J, Brocker CN, Desai D, Amin SG, Bisson WH, Liu Y, Gavrilova O, Patterson AD, Gonzalez FJ | Nature communications | 26670557 | Nat Commun | 2015 Dec 15 |
| The aryl hydrocarbon receptor activates ceramide biosynthesis in mice contributing to hepatic lipogenesis. | Liu Q, Zhang L, Allman EL, Hubbard TD, Murray IA, Hao F, Tian Y, Gui W, Nichols RG, Smith PB, Anitha M, Perdew GH, Patterson AD | Toxicology | 34097992 | Toxicology | 2021 Jun 30 |
| Stable isotope- and mass spectrometry-based metabolomics as tools in drug metabolism: a study expanding tempol pharmacology. | Li F, Pang X, Krausz KW, Jiang C, Chen C, Cook JA, Krishna MC, Mitchell JB, Gonzalez FJ, Patterson AD | Journal of proteome research | 23301521 | J Proteome Res | 2013 Mar 1 |
| Noninvasive urinary metabolomic profiling identifies diagnostic and prognostic markers in lung cancer. | Mathé EA, Patterson AD, Haznadar M, Manna SK, Krausz KW, Bowman ED, Shields PG, Idle JR, Smith PB, Anami K, Kazandjian DG, Hatzakis E, Gonzalez FJ, Harris CC | Cancer research | 24736543 | Cancer Res | 2014 Jun 15 |
| Optimization of harvesting, extraction, and analytical protocols for UPLC-ESI-MS-based metabolomic analysis of adherent mammalian cancer cells. | Bi H, Krausz KW, Manna SK, Li F, Johnson CH, Gonzalez FJ | Analytical and bioanalytical chemistry | 23604415 | Anal Bioanal Chem | 2013 Jun |
| Persistent Organic Pollutants Modify Gut Microbiota-Host Metabolic Homeostasis in Mice Through Aryl Hydrocarbon Receptor Activation. | Zhang L, Nichols RG, Correll J, Murray IA, Tanaka N, Smith PB, Hubbard TD, Sebastian A, Albert I, Hatzakis E, Gonzalez FJ, Perdew GH, Patterson AD | Environmental health perspectives | 25768209 | Environ Health Perspect | 2015 Jul |
| Role of fibroblast growth factor 21 in the early stage of NASH induced by methionine- and choline-deficient diet. | Tanaka N, Takahashi S, Zhang Y, Krausz KW, Smith PB, Patterson AD, Gonzalez FJ | Biochimica et biophysica acta | 25736301 | Biochim Biophys Acta | 2015 Jul |
| Expression of the aryl hydrocarbon receptor contributes to the establishment of intestinal microbial community structure in mice. | Murray IA, Nichols RG, Zhang L, Patterson AD, Perdew GH | Scientific reports | 27659481 | Sci Rep | 2016 Sep 23 |
| Hepatic steatosis risk is partly driven by increased de novo lipogenesis following carbohydrate consumption. | Sanders FWB, Acharjee A, Walker C, Marney L, Roberts LD, Imamura F, Jenkins B, Case J, Ray S, Virtue S, Vidal-Puig A, Kuh D, Hardy R, Allison M, Forouhi N, Murray AJ, Wareham N, Vacca M, Koulman A, Griffin JL | Genome biology | 29925420 | Genome Biol | 2018 Jun 20 |
| Activation of intestinal hypoxia-inducible factor 2α during obesity contributes to hepatic steatosis. | Xie C, Yagai T, Luo Y, Liang X, Chen T, Wang Q, Sun D, Zhao J, Ramakrishnan SK, Sun L, Jiang C, Xue X, Tian Y, Krausz KW, Patterson AD, Shah YM, Wu Y, Jiang C, Gonzalez FJ | Nature medicine | 29035368 | Nat Med | 2017 Nov |
| Microbial determinants of biochemical individuality and their impact on toxicology and pharmacology. | Patterson AD, Turnbaugh PJ | Cell metabolism | 25156450 | Cell Metab | 2014 Nov 4 |
| Metabolomics dataset of PPAR-pan treated rat liver. | Ament Z, West JA, Stanley E, Li X, Ashmore T, Roberts LD, Wright J, Nicholls AW, Griffin JL | Data in brief | 27331087 | Data Brief | 2016 Sep |
| A review of analytical platforms for accurate bile acid measurement. | Dutta M, Cai J, Gui W, Patterson AD | Analytical and bioanalytical chemistry | 31127337 | Anal Bioanal Chem | 2019 Jul |
| Role of white adipose lipolysis in the development of NASH induced by methionine- and choline-deficient diet. | Tanaka N, Takahashi S, Fang ZZ, Matsubara T, Krausz KW, Qu A, Gonzalez FJ | Biochimica et biophysica acta | 25178843 | Biochim Biophys Acta | 2014 Nov |
| An Intestinal Farnesoid X Receptor-Ceramide Signaling Axis Modulates Hepatic Gluconeogenesis in Mice. | Xie C, Jiang C, Shi J, Gao X, Sun D, Sun L, Wang T, Takahashi S, Anitha M, Krausz KW, Patterson AD, Gonzalez FJ | Diabetes | 28223344 | Diabetes | 2017 Mar |
| Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database. | Zhu ZJ, Schultz AW, Wang J, Johnson CH, Yannone SM, Patti GJ, Siuzdak G | Nature protocols | 23391889 | Nat Protoc | 2013 Mar |
| Toward 'omic scale metabolite profiling: a dual separation-mass spectrometry approach for coverage of lipid and central carbon metabolism. | Ivanisevic J, Zhu ZJ, Plate L, Tautenhahn R, Chen S, O'Brien PJ, Johnson CH, Marletta MA, Patti GJ, Siuzdak G | Analytical chemistry | 23781873 | Anal Chem | 2013 Jul 16 |
| The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors. | Dougherty JD, Maloney SE, Wozniak DF, Rieger MA, Sonnenblick L, Coppola G, Mahieu NG, Zhang J, Cai J, Patti GJ, Abrahams BS, Geschwind DH, Heintz N | The Journal of neuroscience : the official journal of the Society for Neuroscience | 23407934 | J Neurosci | 2013 Feb 13 |
| Warpgroup: increased precision of metabolomic data processing by consensus integration bound analysis. | Mahieu NG, Spalding JL, Patti GJ | Bioinformatics (Oxford, England) | 26424859 | Bioinformatics | 2016 Jan 15 |
| Monitoring metabolic responses to chemotherapy in single cells and tumors using nanostructure-initiator mass spectrometry (NIMS) imaging. | O'Brien PJ, Lee M, Spilker ME, Zhang CC, Yan Z, Nichols TC, Li W, Johnson CH, Patti GJ, Siuzdak G | Cancer & metabolism | 24280026 | Cancer Metab | 2013 Jan 23 |
| Bar Coding MS(2) Spectra for Metabolite Identification. | Spalding JL, Cho K, Mahieu NG, Nikolskiy I, Llufrio EM, Johnson SL, Patti GJ | Analytical chemistry | 26837423 | Anal Chem | 2016 Mar 1 |
| Knockdown of triglyceride synthesis does not enhance palmitate lipotoxicity or prevent oleate-mediated rescue in rat hepatocytes. | Leamy AK, Hasenour CM, Egnatchik RA, Trenary IA, Yao CH, Patti GJ, Shiota M, Young JD | Biochimica et biophysica acta | 27249207 | Biochim Biophys Acta | 2016 Sep |
| A roadmap for the XCMS family of software solutions in metabolomics. | Mahieu NG, Genenbacher JL, Patti GJ | Current opinion in chemical biology | 26673825 | Curr Opin Chem Biol | 2016 Feb |
| After the feature presentation: technologies bridging untargeted metabolomics and biology. | Cho K, Mahieu NG, Johnson SL, Patti GJ | Current opinion in biotechnology | 24816495 | Curr Opin Biotechnol | 2014 Aug |
| Trace Phosphate Improves ZIC-pHILIC Peak Shape, Sensitivity, and Coverage for Untargeted Metabolomics. | Spalding JL, Naser FJ, Mahieu NG, Johnson SL, Patti GJ | Journal of proteome research | 30160483 | J Proteome Res | 2018 Oct 5 |
| XCMS Online: a web-based platform to process untargeted metabolomic data. | Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G | Analytical chemistry | 22533540 | Anal Chem | 2012 Jun 5 |
| Differential incorporation of glucose into biomass during Warburg metabolism. | Chen YJ, Huang X, Mahieu NG, Cho K, Schaefer J, Patti GJ | Biochemistry | 25010499 | Biochemistry | 2014 Jul 29 |
| Metabolomic data streaming for biology-dependent data acquisition. | Rinehart D, Johnson CH, Nguyen T, Ivanisevic J, Benton HP, Lloyd J, Arkin AP, Deutschbauer AM, Patti GJ, Siuzdak G | Nature biotechnology | 24911492 | Nat Biotechnol | 2014 Jun |
| An untargeted metabolomic workflow to improve structural characterization of metabolites. | Nikolskiy I, Mahieu NG, Chen YJ, Tautenhahn R, Patti GJ | Analytical chemistry | 23829391 | Anal Chem | 2013 Aug 20 |
| A view from above: cloud plots to visualize global metabolomic data. | Patti GJ, Tautenhahn R, Rinehart D, Cho K, Shriver LP, Manchester M, Nikolskiy I, Johnson CH, Mahieu NG, Siuzdak G | Analytical chemistry | 23206250 | Anal Chem | 2013 Jan 15 |
| Inaccurate quantitation of palmitate in metabolomics and isotope tracer studies due to plastics. | Yao CH, Liu GY, Yang K, Gross RW, Patti GJ | Metabolomics : Official journal of the Metabolomic Society | 27721678 | Metabolomics | 2016 Sep |
| Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses. | Gowda H, Ivanisevic J, Johnson CH, Kurczy ME, Benton HP, Rinehart D, Nguyen T, Ray J, Kuehl J, Arevalo B, Westenskow PD, Wang J, Arkin AP, Deutschbauer AM, Patti GJ, Siuzdak G | Analytical chemistry | 24934772 | Anal Chem | 2014 Jul 15 |
| Lactate metabolism is associated with mammalian mitochondria. | Chen YJ, Mahieu NG, Huang X, Singh M, Crawford PA, Johnson SL, Gross RW, Schaefer J, Patti GJ | Nature chemical biology | 27618187 | Nat Chem Biol | 2016 Nov |
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| Discriminating precursors of common fragments for large-scale metabolite profiling by triple quadrupole mass spectrometry. | Nikolskiy I, Siuzdak G, Patti GJ | Bioinformatics (Oxford, England) | 25691443 | Bioinformatics | 2015 Jun 15 |
| Inflammation triggers production of dimethylsphingosine from oligodendrocytes. | Chen YJ, Hill S, Huang H, Taraboletti A, Cho K, Gallo R, Manchester M, Shriver LP, Patti GJ | Neuroscience | 25151189 | Neuroscience | 2014 Oct 24 |
| Radioresistant Cervical Cancers Are Sensitive to Inhibition of Glycolysis and Redox Metabolism. | Rashmi R, Huang X, Floberg JM, Elhammali AE, McCormick ML, Patti GJ, Spitz DR, Schwarz JK | Cancer research | 29339540 | Cancer Res | 2018 Mar 15 |
| Exogenous Fatty Acids Are the Preferred Source of Membrane Lipids in Proliferating Fibroblasts. | Yao CH, Fowle-Grider R, Mahieu NG, Liu GY, Chen YJ, Wang R, Singh M, Potter GS, Gross RW, Schaefer J, Johnson SL, Patti GJ | Cell chemical biology | 27049668 | Cell Chem Biol | 2016 Apr 21 |
| The isotridecanyl side chain of plusbacin-A3 is essential for the transglycosylase inhibition of peptidoglycan biosynthesis. | Kim SJ, Singh M, Wohlrab A, Yu TY, Patti GJ, O'Connor RD, VanNieuwenhze M, Schaefer J | Biochemistry | 23421534 | Biochemistry | 2013 Mar 19 |
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| Combined variants in factor VIII and prostaglandin synthase-1 amplify hemorrhage severity across three generations of descendants. | Nance D, Campbell RA, Rowley JW, Downie JM, Jorde LB, Kahr WH, Mereby SA, Tolley ND, Zimmerman GA, Weyrich AS, Rondina MT | Journal of thrombosis and haemostasis : JTH | 27629384 | J Thromb Haemost | 2016 Nov |
| Germline mutations in ETV6 are associated with thrombocytopenia, red cell macrocytosis and predisposition to lymphoblastic leukemia. | Noetzli L, Lo RW, Lee-Sherick AB, Callaghan M, Noris P, Savoia A, Rajpurkar M, Jones K, Gowan K, Balduini C, Pecci A, Gnan C, De Rocco D, Doubek M, Li L, Lu L, Leung R, Landolt-Marticorena C, Hunger S, Heller P, Gutierrez-Hartmann A, Xiayuan L, Pluthero FG, Rowley JW, Weyrich AS, Kahr WHA, Porter CC, Di Paola J | Nature genetics | 25807284 | Nat Genet | 2015 May |
| Platelet microparticles infiltrating solid tumors transfer miRNAs that suppress tumor growth. | Michael JV, Wurtzel JGT, Mao GF, Rao AK, Kolpakov MA, Sabri A, Hoffman NE, Rajan S, Tomar D, Madesh M, Nieman MT, Yu J, Edelstein LC, Rowley JW, Weyrich AS, Goldfinger LE | Blood | 28500171 | Blood | 2017 Aug 3 |
| Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids. | Schwertz H, Rowley JW, Schumann GG, Thorack U, Campbell RA, Manne BK, Zimmerman GA, Weyrich AS, Rondina MT | Arteriosclerosis, thrombosis, and vascular biology | 29301786 | Arterioscler Thromb Vasc Biol | 2018 Apr |
| Coordinate expression of transcripts and proteins in platelets. | Rowley JW, Weyrich AS | Blood | 23813941 | Blood | 2013 Jun 27 |
| Non-genomic activities of retinoic acid receptor alpha control actin cytoskeletal events in human platelets. | Rondina MT, Freitag M, Pluthero FG, Kahr WH, Rowley JW, Kraiss LW, Franks Z, Zimmerman GA, Weyrich AS, Schwertz H | Journal of thrombosis and haemostasis : JTH | 26848712 | J Thromb Haemost | 2016 May |
| Granzyme A in Human Platelets Regulates the Synthesis of Proinflammatory Cytokines by Monocytes in Aging. | Campbell RA, Franks Z, Bhatnagar A, Rowley JW, Manne BK, Supiano MA, Schwertz H, Weyrich AS, Rondina MT | Journal of immunology (Baltimore, Md. : 1950) | 29167233 | J Immunol | 2018 Jan 1 |
| Platelet mRNA: the meaning behind the message. | Rowley JW, Schwertz H, Weyrich AS | Current opinion in hematology | 22814651 | Curr Opin Hematol | 2012 Sep |
| Neonatal NET-inhibitory factor and related peptides inhibit neutrophil extracellular trap formation. | Yost CC, Schwertz H, Cody MJ, Wallace JA, Campbell RA, Vieira-de-Abreu A, Araujo CV, Schubert S, Harris ES, Rowley JW, Rondina MT, Fulcher JM, Koening CL, Weyrich AS, Zimmerman GA | The Journal of clinical investigation | 27599294 | J Clin Invest | 2016 Oct 3 |
| Glucose Transporter 3 Potentiates Degranulation and Is Required for Platelet Activation. | Fidler TP, Middleton EA, Rowley JW, Boudreau LH, Campbell RA, Souvenir R, Funari T, Tessandier N, Boilard E, Weyrich AS, Abel ED | Arteriosclerosis, thrombosis, and vascular biology | 28663252 | Arterioscler Thromb Vasc Biol | 2017 Sep |
| Sepsis alters the transcriptional and translational landscape of human and murine platelets. | Middleton EA, Rowley JW, Campbell RA, Grissom CK, Brown SM, Beesley SJ, Schwertz H, Kosaka Y, Manne BK, Krauel K, Tolley ND, Eustes AS, Guo L, Paine R 3rd, Harris ES, Zimmerman GA, Weyrich AS, Rondina MT | Blood | 31366617 | Blood | 2019 Sep 19 |
| The fate of mitochondria during platelet activation. | Grichine A, Jacob S, Eckly A, Villaret J, Joubert C, Appaix F, Pezet M, Ribba AS, Denarier E, Mazzega J, Rinckel JY, Lafanechère L, Elena-Herrmann B, Rowley JW, Sadoul K | Blood advances | 37624769 | Blood Adv | 2023 Oct 24 |
| Key role of microRNA in the regulation of granulocyte macrophage colony-stimulating factor expression in murine alveolar epithelial cells during oxidative stress. | Sturrock A, Mir-Kasimov M, Baker J, Rowley J, Paine R 3rd | The Journal of biological chemistry | 24371146 | J Biol Chem | 2014 Feb 14 |
| Heparanase expression and activity are increased in platelets during clinical sepsis. | Eustes AS, Campbell RA, Middleton EA, Tolley ND, Manne BK, Montenont E, Rowley JW, Krauel K, Blair A, Guo L, Kosaka Y, Medeiros-de-Moraes IM, Lacerda M, Hottz ED, Neto HCF, Zimmerman GA, Weyrich AS, Petrey A, Rondina MT | Journal of thrombosis and haemostasis : JTH | 33587773 | J Thromb Haemost | 2021 May |
| Retinoic acid receptor-α regulates synthetic events in human platelets. | Schwertz H, Rowley JW, Zimmerman GA, Weyrich AS, Rondina MT | Journal of thrombosis and haemostasis : JTH | 28981191 | J Thromb Haemost | 2017 Dec |
| Dicer1-mediated miRNA processing shapes the mRNA profile and function of murine platelets. | Rowley JW, Chappaz S, Corduan A, Chong MM, Campbell R, Khoury A, Manne BK, Wurtzel JG, Michael JV, Goldfinger LE, Mumaw MM, Nieman MT, Kile BT, Provost P, Weyrich AS | Blood | 26773046 | Blood | 2016 Apr 7 |
| Platelet-derived TLT-1 is a prognostic indicator in ALI/ARDS and prevents tissue damage in the lungs in a mouse model. | Morales-Ortíz J, Deal V, Reyes F, Maldonado-Martínez G, Ledesma N, Staback F, Croft C, Pacheco A, Ortiz-Zuazaga H, Yost CC, Rowley JW, Madera B, John AS, Chen J, Lopez J, Rondina MT, Hunter R, Gibson A, Washington AV | Blood | 30282800 | Blood | 2018 Dec 6 |
| Longitudinal RNA-Seq Analysis of the Repeatability of Gene Expression and Splicing in Human Platelets Identifies a Platelet SELP Splice QTL. | Rondina MT, Voora D, Simon LM, Schwertz H, Harper JF, Lee O, Bhatlekar SC, Li Q, Eustes AS, Montenont E, Campbell RA, Tolley ND, Kosaka Y, Weyrich AS, Bray PF, Rowley JW | Circulation research | 31852401 | Circ Res | 2020 Feb 14 |
| Proteasome function is required for platelet production. | Shi DS, Smith MC, Campbell RA, Zimmerman PW, Franks ZB, Kraemer BF, Machlus KR, Ling J, Kamba P, Schwertz H, Rowley JW, Miles RR, Liu ZJ, Sola-Visner M, Italiano JE Jr, Christensen H, Kahr WH, Li DY, Weyrich AS | The Journal of clinical investigation | 25061876 | J Clin Invest | 2014 Sep |
| A tour through the transcriptional landscape of platelets. | Schubert S, Weyrich AS, Rowley JW | Blood | 24904119 | Blood | 2014 Jul 24 |
| Platelet abnormalities in Huntington's disease. | Denis HL, Lamontagne-Proulx J, St-Amour I, Mason SL, Rowley JW, Cloutier N, Tremblay MÈ, Vincent AT, Gould PV, Chouinard S, Weyrich AS, Rondina MT, Barker RA, Boilard E, Cicchetti F | Journal of neurology, neurosurgery, and psychiatry | 30567722 | J Neurol Neurosurg Psychiatry | 2019 Mar |
| Superoxide Dismutase 2 is dispensable for platelet function. | Fidler TP, Rowley JW, Araujo C, Boudreau LH, Marti A, Souvenir R, Dale K, Boilard E, Weyrich AS, Abel ED | Thrombosis and haemostasis | 28771279 | Thromb Haemost | 2017 Oct 5 |
| Clots Are Potent Triggers of Inflammatory Cell Gene Expression: Indications for Timely Fibrinolysis. | Campbell RA, Vieira-de-Abreu A, Rowley JW, Franks ZG, Manne BK, Rondina MT, Kraiss LW, Majersik JJ, Zimmerman GA, Weyrich AS | Arteriosclerosis, thrombosis, and vascular biology | 28775073 | Arterioscler Thromb Vasc Biol | 2017 Oct |
| Ribosomes in platelets protect the messenger. | Rowley JW, Weyrich AS | Blood | 28450575 | Blood | 2017 Apr 27 |
| Mitofusin-2 Regulates Platelet Mitochondria and Function. | Jacob S, Kosaka Y, Bhatlekar S, Denorme F, Benzon H, Moody A, Moody V, Tugolukova EA, Hull G, Kishimoto N, Manne BK, Guo L, Souvenir R, Seliger BJ, Eustes AS, Hoerger K, Tolley ND, Fatahian AN, Boudina S, Christiani DC, Wei Y, Ju C, Campbell RA, Rondina MT, Abel ED, Bray PF, Weyrich AS, Rowley JW | Circulation research | 38156445 | Circ Res | 2024 Jan 19 |
