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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Authors Journal PubMedID Publication Date
Bayesian kinetic modeling for tracer-based metabolomic data. Zhang, Xu; Su, Ya; Lane, Andrew N; Stromberg, Arnold J; Fan, Teresa W M; Wang, Chi BMC bioinformatics 36949395 2023 Mar 22
Metabolic dysfunction in obesity is related to impaired suppression of fatty acid release from adipose tissue by insulin. Schleh, Michael W; Ryan, Benjamin J; Ahn, Cheehoon; Ludzki, Alison C; Varshney, Pallavi; Gillen, Jenna B; Van Pelt, Douglas W; Pitchford, Lisa M; Howton, Suzette M; Rode, Thomas; Chenevert, Thomas L; Hummel, Scott L; Burant, Charles F; Horowitz, Jeffrey F Obesity (Silver Spring, Md.) 36988872 2023 May
Guiding the choice of informatics software and tools for lipidomics research applications. Ni, Zhixu; Wölk, Michele; Jukes, Geoff; Mendivelso Espinosa, Karla; Ahrends, Robert; Aimo, Lucila; Alvarez-Jarreta, Jorge; Andrews, Simon; Andrews, Robert; Bridge, Alan; Clair, Geremy C; Conroy, Matthew J; Fahy, Eoin; Gaud, Caroline; Goracci, Laura; Hartler, Jürgen; Hoffmann, Nils; Kopczyinki, Dominik; Korf, Ansgar; Lopez-Clavijo, Andrea F; Malik, Adnan; Ackerman, Jacobo Miranda; Molenaar, Martijn R; O'Donovan, Claire; Pluskal, Tomáš; Shevchenko, Andrej; Slenter, Denise; Siuzdak, Gary; Kutmon, Martina; Tsugawa, Hiroshi; Willighagen, Egon L; Xia, Jianguo; O'Donnell, Valerie B; Fedorova, Maria Nature methods 36543939 2023 Feb
Comprehensive investigation of pathway enrichment methods for functional interpretation of LC-MS global metabolomics data. Lu, Yao; Pang, Zhiqiang; Xia, Jianguo Briefings in bioinformatics 36572652 2023 Jan 19
Oxidation of hyperpolarized [1-13 C]pyruvate in isolated rat kidneys. Sharma, Gaurav; Maptue, Nesmine; Rahim, Mohsin; Trigo Mijes, Miriam L; Hever, Thomas; Wen, Xiaodong; Funk, Alexander M; Malloy, Craig R; Young, Jamey D; Khemtong, Chalermchai NMR in biomedicine 36285844 2023 Mar
Trichloroethylene Metabolite S-(1,2-Dichlorovinyl)-l-cysteine Stimulates Changes in Energy Metabolites and Amino Acids in the BeWo Human Placental Trophoblast Model during Syncytialization. Su, Anthony L; Harris, Sean M; Elkin, Elana R; Karnovsky, Alla; Colacino, Justin; Loch-Caruso, Rita Karen Chemical research in toxicology 37162359 2023 Jun 19
Zinc treatment reverses and anti-Zn-regulated miRs suppress esophageal carcinomas in vivo. Fong, Louise Y; Huebner, Kay; Jing, Ruiyan; Smalley, Karl J; Brydges, Christopher R; Fiehn, Oliver; Farber, John L; Croce, Carlo M Proceedings of the National Academy of Sciences of the United States of America 37155893 2023 May 16
Implementing the MSFragger Search Engine as a Node in Proteome Discoverer. Chang, Hui-Yin; Haynes, Sarah E; Yu, Fengchao; Nesvizhskii, Alexey I Journal of proteome research 36475762 2023 Feb 03
Sex-specificity of the C. elegans metabolome. Burkhardt, Russell N; Artyukhin, Alexander B; Aprison, Erin Z; Curtis, Brian J; Fox, Bennett W; Ludewig, Andreas H; Palomino, Diana Fajardo; Luo, Jintao; Chaturbedi, Amaresh; Panda, Oishika; Wrobel, Chester J J; Baumann, Victor; Portman, Douglas S; Lee, Siu Sylvia; Ruvinsky, Ilya; Schroeder, Frank C Nature communications 36658169 2023 Jan 19
Serum metabolomic analysis reveals several novel metabolites in association with excessive alcohol use - an exploratory study. Liu, Danni; Yang, Zhihong; Chandler, Kristina; Oshodi, Adepeju; Zhang, Ting; Ma, Jing; Kusumanchi, Praveen; Huda, Nazmul; Heathers, Laura; Perez, Kristina; Tyler, Kelsey; Ross, Ruth Ann; Jiang, Yanchao; Zhang, Dabao; Zhang, Min; Liangpunsakul, Suthat Translational research : the journal of laboratory and clinical medicine 34743014 2022 Feb
A Review on Differential Abundance Analysis Methods for Mass Spectrometry-Based Metabolomic Data. Huang, Zhengyan; Wang, Chi Metabolites 35448492 2022 Mar 30
GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease. McIntyre, Lauren M; Huertas, Francisco; Morse, Alison M; Kaletsky, Rachel; Murphy, Coleen T; Kalia, Vrinda; Miller, Gary W; Moskalenko, Olexander; Conesa, Ana; Mor, Danielle E Scientific reports 35228596 2022 Feb 28
Trimester-specific phthalate exposures in pregnancy are associated with circulating metabolites in children. Goodrich, Jaclyn M; Tang, Lu; Carmona, Yanelli R; Meijer, Jennifer L; Perng, Wei; Watkins, Deborah J; Meeker, John D; Mercado-García, Adriana; Cantoral, Alejandra; Song, Peter X; Téllez-Rojo, Martha M; Peterson, Karen E PloS one 36040907 2022
NKT cells adopt a glutamine-addicted phenotype to regulate their homeostasis and function. Kumar, Ajay; Yarosz, Emily L; Andren, Anthony; Zhang, Li; Lyssiotis, Costas A; Chang, Cheong-Hee Cell reports 36288696 2022 Oct 25
Plasma Oxylipin Profile Discriminates Ethnicities in Subjects with Non-Alcoholic Steatohepatitis: An Exploratory Analysis. Mazi, Tagreed A; Borkowski, Kamil; Fiehn, Oliver; Bowlus, Christopher L; Sarkar, Souvik; Matsukuma, Karen; Ali, Mohamed R; Kieffer, Dorothy A; Wan, Yu-Jui Y; Stanhope, Kimber L; Havel, Peter J; Newman, John W; Medici, Valentina Metabolites 35208265 2022 Feb 19
Mitochondrial superoxide targets energy metabolism to modulate epigenetic regulation of NRF2-mediated transcription. Dhar, Sanjit K; Scott, Timothy; Wang, Chi; Fan, Teresa W M; St Clair, Daret K Free radical biology & medicine 34968705 2022 Feb 01
Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier Transform Mass Spectrometry Experiments. Flight, Robert M; Mitchell, Joshua M; Moseley, Hunter N B Metabolites 35736448 2022 Jun 02
Generalized Tree Structure to Annotate Untargeted Metabolomics and Stable Isotope Tracing Data. Li, Shuzhao; Zheng, Shujian Analytical chemistry 37018697 2023 Apr 18
Recent advances in mass spectrometry-based computational metabolomics. Ebbels, Timothy M D; van der Hooft, Justin J J; Chatelaine, Haley; Broeckling, Corey; Zamboni, Nicola; Hassoun, Soha; Mathé, Ewy A Current opinion in chemical biology 36966702 2023 Jun
Pyruvate dehydrogenase kinase regulates vascular inflammation in atherosclerosis and increases cardiovascular risk. Forteza, Maria J; Berg, Martin; Edsfeldt, Andreas; Sun, Jangming; Baumgartner, Roland; Kareinen, Ilona; Casagrande, Felipe Beccaria; Hedin, Ulf; Zhang, Song; Vuckovic, Ivan; Dzeja, Petras P; Polyzos, Konstantinos A; Gisterå, Anton; Trauelsen, Mette; Schwartz, Thue W; Dib, Lea; Herrmann, Joerg; Monaco, Claudia; Matic, Ljubica; Gonçalves, Isabel; Ketelhuth, Daniel F J Cardiovascular research 36866436 2023 Jul 04
Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. Nielson, Felicity F; Kay, Bill; Young, Stephen J; Colby, Sean M; Renslow, Ryan S; Metz, Thomas O Metabolites 36677030 2023 Jan 09
Noncovalent Host-Guest Complexes of Artemisinin with α-, β-, and γ- Cyclodextrin Examined by Structural Mass Spectrometry Strategies. Zlibut, Emanuel; May, Jody C; Wei, Yansheng; Gessmann, Dennis; Wood, Constance S; Bernat, Bryan A; Pugh, Teresa E; Palmer-Jones, Lauren; Cosquer, Ronan P; Dybeck, Eric; McLean, John A Analytical chemistry 37184072 2023 May 30
A pilot metabolomic study of drug interaction with the immune response to seasonal influenza vaccination. Siddiqa, Amnah; Wang, Yating; Thapa, Maheshwor; Martin, Dominique E; Cadar, Andreia N; Bartley, Jenna M; Li, Shuzhao NPJ vaccines 37308481 2023 Jun 12
Diet high in linoleic acid dysregulates the intestinal endocannabinoid system and increases susceptibility to colitis in Mice. Deol, Poonamjot; Ruegger, Paul; Logan, Geoffrey D; Shawki, Ali; Li, Jiang; Mitchell, Jonathan D; Yu, Jacqueline; Piamthai, Varadh; Radi, Sarah H; Hasnain, Sana; Borkowski, Kamil; Newman, John W; McCole, Declan F; Nair, Meera G; Hsiao, Ansel; Borneman, James; Sladek, Frances M Gut microbes 37400966 2023
ATP10A promotes endothelial cell insulin sensitivity and protects against diet-induced dyslipidemia in female mice. Norris, Adriana C; Yazlovitskaya, Eugenia M; Zhu, Lin; Rose, Bailey S; Mansueto, Alex; Gibson-Corley, Katherine N; May, Jody C; McLean, John A; Stafford, John M; Graham, Todd R bioRxiv : the preprint server for biology 37398141 2023 Jun 27
Enrichment of hepatic glycogen and plasma glucose from H₂18 O informs gluconeogenic and indirect pathway fluxes in naturally feeding mice. Coelho, Margarida; Mahar, Rohit; Belew, Getachew D; Torres, Alejandra; Barosa, Cristina; Cabral, Fernando; Viegas, Ivan; Gastaldelli, Amalia; Mendes, Vera M; Manadas, Bruno; Jones, John G; Merritt, Matthew E NMR in biomedicine 36151589 2023 Feb
Assessing the impact of boldine on the gastrocnemius using multiomics profiling at 7 and 28 days post-complete spinal cord injury in young male mice. Potter, Luke A; Toro, Carlos A; Harlow, Lauren; Lavin, Kaleen M; Cardozo, Christopher P; Wende, Adam R; Graham, Zachary A Physiological genomics 37125768 2023 Jul 01
Quantitative multiple fragment monitoring with enhanced in-source fragmentation/annotation mass spectrometry. Bernardo-Bermejo, Samuel; Xue, Jingchuan; Hoang, Linh; Billings, Elizabeth; Webb, Bill; Honders, M Willy; Venneker, Sanne; Heijs, Bram; Castro-Puyana, María; Marina, María Luisa; van den Akker, Erik B; Griffioen, Marieke; Siuzdak, Gary; Giera, Martin; Sánchez-López, Elena Nature protocols 36755131 2023 Apr
The p97-UBXD8 complex regulates ER-Mitochondria contact sites by altering membrane lipid saturation and composition. Ganji, Rakesh; Paulo, Joao A; Xi, Yuecheng; Kline, Ian; Zhu, Jiang; Clemen, Christoph S; Weihl, Conrad C; Purdy, John G; Gygi, Steve P; Raman, Malavika Nature communications 36746962 2023 Feb 06
Four-dimensional trapped ion mobility spectrometry lipidomics for high throughput clinical profiling of human blood samples. Lerner, Raissa; Baker, Dhanwin; Schwitter, Claudia; Neuhaus, Sarah; Hauptmann, Tony; Post, Julia M; Kramer, Stefan; Bindila, Laura Nature communications 36806650 2023 Feb 20
Phospholipase D3 degrades mitochondrial DNA to regulate nucleotide signaling and APP metabolism. Van Acker, Zoë P; Perdok, Anika; Hellemans, Ruben; North, Katherine; Vorsters, Inge; Cappel, Cedric; Dehairs, Jonas; Swinnen, Johannes V; Sannerud, Ragna; Bretou, Marine; Damme, Markus; Annaert, Wim Nature communications 37225734 2023 May 24
Defining diurnal fluctuations in mouse choroid plexus and CSF at high molecular, spatial, and temporal resolution. Fame, Ryann M; Kalugin, Peter N; Petrova, Boryana; Xu, Huixin; Soden, Paul A; Shipley, Frederick B; Dani, Neil; Grant, Bradford; Pragana, Aja; Head, Joshua P; Gupta, Suhasini; Shannon, Morgan L; Chifamba, Fortunate F; Hawks-Mayer, Hannah; Vernon, Amanda; Gao, Fan; Zhang, Yong; Holtzman, Michael J; Heiman, Myriam; Andermann, Mark L; Kanarek, Naama; Lipton, Jonathan O; Lehtinen, Maria K Nature communications 37349305 2023 Jun 22
Cellular transformation promotes the incorporation of docosahexaenoic acid into the endolysosome-specific lipid bis(monoacylglycerol)phosphate in breast cancer. Berg, Anastasia L; Showalter, Megan R; Kosaisawe, Nont; Hu, Michelle; Stephens, Nathanial C; Sa, Michael; Heil, Hailey; Castro, Noemi; Chen, Jenny J; VanderVorst, Kacey; Wheeler, Madelyn R; Rabow, Zachary; Cajka, Tomas; Albeck, John; Fiehn, Oliver; Carraway 3rd, Kermit L Cancer letters 36773796 2023 Mar 31
Identification of cerebrospinal fluid and serum metabolomic biomarkers in first episode psychosis patients. Shang, Pei; Ho, Ada Man-Choi; Tufvesson-Alm, Maximilian; Lindberg, Daniel R; Grant, Caroline W; Orhan, Funda; Eren, Feride; Bhat, Maria; Engberg, Göran; Schwieler, Lilly; Fatouros-Bergman, Helena; Imbeault, Sophie; Iverson, Ryan M; Dasari, Surendra; Piehl, Fredrik; Cervenka, Simon; Sellgren, Carl M; Erhardt, Sophie; Choi, Doo-Sup Translational psychiatry 35665740 2022 Jun 03
Sodium dichloroacetate stimulates cardiac mitochondrial metabolism and improves cardiac conduction in the ovine fetus during labor. Joseph, Serene; Li, Mengchen; Zhang, Sicong; Horne, Lloyd; Stacpoole, Peter W; Wohlgemuth, Stephanie E; Edison, Arthur S; Wood, Charles; Keller-Wood, Maureen American journal of physiology. Regulatory, integrative and comparative physiology 34851727 2022 Jan 01
Plasma concentrations of lipophilic persistent organic pollutants and glucose homeostasis in youth populations. Baumert, Brittney O; Goodrich, Jesse A; Hu, Xin; Walker, Douglas I; Alderete, Tanya L; Chen, Zhanghua; Valvi, Damaskini; Rock, Sarah; Berhane, Kiros; Gilliland, Frank D; Goran, Michael I; Jones, Dean P; Conti, David V; Chatzi, Leda Environmental research 35447156 2022 Sep
Reducing subspace models for large-scale covariance regression. Franks, Alexander M Biometrics 34458980 2022 Dec
PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases. Liu, Tianyuan; Salguero, Pedro; Petek, Marko; Martinez-Mira, Carlos; Balzano-Nogueira, Leandro; Ramšak, Živa; McIntyre, Lauren; Gruden, Kristina; Tarazona, Sonia; Conesa, Ana Nucleic acids research 35609982 2022 Jul 05
Polarization and β-Glucan Reprogram Immunomodulatory Metabolism in Human Macrophages and Ex Vivo in Human Lung Cancer Tissues. Fan, Teresa W-M; Daneshmandi, Saeed; Cassel, Teresa A; Uddin, Mohammad B; Sledziona, James; Thompson, Patrick T; Lin, Penghui; Higashi, Richard M; Lane, Andrew N Journal of immunology (Baltimore, Md. : 1950) 36150727 2022 Nov 01
A Metabolomic Aging Clock Using Human Cerebrospinal Fluid. Hwangbo, Nathan; Zhang, Xinyu; Raftery, Daniel; Gu, Haiwei; Hu, Shu-Ching; Montine, Thomas J; Quinn, Joseph F; Chung, Kathryn A; Hiller, Amie L; Wang, Dongfang; Fei, Qiang; Bettcher, Lisa; Zabetian, Cyrus P; Peskind, Elaine; Li, Gail; Promislow, Daniel E L; Franks, Alexander The journals of gerontology. Series A, Biological sciences and medical sciences 34382643 2022 Apr 01
Lipidomic approaches to dissect dysregulated lipid metabolism in kidney disease. Baek, Judy; He, Chenchen; Afshinnia, Farsad; Michailidis, George; Pennathur, Subramaniam Nature reviews. Nephrology 34616096 2022 Jan
Metabolite discovery: Biochemistry's scientific driver. Giera, Martin; Yanes, Oscar; Siuzdak, Gary Cell metabolism 34986335 2022 Jan 04
Metabolic flux analysis of the non-transitory starch tradeoff for lipid production in mature tobacco leaves. Chu, Kevin L; Koley, Somnath; Jenkins, Lauren M; Bailey, Sally R; Kambhampati, Shrikaar; Foley, Kevin; Arp, Jennifer J; Morley, Stewart A; Czymmek, Kirk J; Bates, Philip D; Allen, Doug K Metabolic engineering 34920088 2022 Jan
Glucose-6-phosphatase catalytic subunit 2 negatively regulates glucose oxidation and insulin secretion in pancreatic β-cells. Rahim, Mohsin; Nakhe, Arya Y; Banerjee, Deveena R; Overway, Emily M; Bosma, Karin J; Rosch, Jonah C; Oeser, James K; Wang, Bo; Lippmann, Ethan S; Jacobson, David A; O'Brien, Richard M; Young, Jamey D The Journal of biological chemistry 35176280 2022 Apr
Exercise training remodels subcutaneous adipose tissue in adults with obesity even without weight loss. Ahn, Cheehoon; Ryan, Benjamin J; Schleh, Michael W; Varshney, Pallavi; Ludzki, Alison C; Gillen, Jenna B; Van Pelt, Douglas W; Pitchford, Lisa M; Howton, Suzette M; Rode, Thomas; Hummel, Scott L; Burant, Charles F; Little, Jonathan P; Horowitz, Jeffrey F The Journal of physiology 35249225 2022 May
Host lipidome and tuberculosis treatment failure. Shivakoti, Rupak; Newman, John W; Hanna, Luke Elizabeth; Queiroz, Artur T L; Borkowski, Kamil; Gupte, Akshay N; Paradkar, Mandar; Satyamurthi, Pattabiraman; Kulkarni, Vandana; Selva, Murugesh; Pradhan, Neeta; Shivakumar, Shri Vijay Bala Yogendra; Natarajan, Saravanan; Karunaianantham, Ramesh; Gupte, Nikhil; Thiruvengadam, Kannan; Fiehn, Oliver; Bharadwaj, Renu; Kagal, Anju; Gaikwad, Sanjay; Sangle, Shashikala; Golub, Jonathan E; Andrade, Bruno B; Mave, Vidya; Gupta, Amita; Padmapriyadarsini, Chandrasekaran The European respiratory journal 34375300 2022 Jan
Isolated murine skeletal muscles utilize pyruvate over glucose for oxidation. Khattri, Ram B; Puglise, Jason; Ryan, Terence E; Walter, Glenn A; Merritt, Matthew E; Barton, Elisabeth R Metabolomics : Official journal of the Metabolomic Society 36480060 2022 Dec 08
Maternal plasma lipids are involved in the pathogenesis of preterm birth. Chen, Yile; He, Bing; Liu, Yu; Aung, Max T; Rosario-Pabón, Zaira; Vélez-Vega, Carmen M; Alshawabkeh, Akram; Cordero, José F; Meeker, John D; Garmire, Lana X GigaScience 35166340 2022 Feb 15
INCA 2.0: A tool for integrated, dynamic modeling of NMR- and MS-based isotopomer measurements and rigorous metabolic flux analysis. Rahim, Mohsin; Ragavan, Mukundan; Deja, Stanislaw; Merritt, Matthew E; Burgess, Shawn C; Young, Jamey D Metabolic engineering 34965470 2022 Jan
High fat diet consumption results in mitochondrial dysfunction, oxidative stress, and oligodendrocyte loss in the central nervous system. Langley, Monica R; Yoon, Hyesook; Kim, Ha Neui; Choi, Chan-Il; Simon, Whitney; Kleppe, Laurel; Lanza, Ian R; LeBrasseur, Nathan K; Matveyenko, Aleksey; Scarisbrick, Isobel A Biochimica et biophysica acta. Molecular basis of disease 31816440 2020 03 01
A Western diet impairs CNS energy homeostasis and recovery after spinal cord injury: Link to astrocyte metabolism. Kim, Ha Neui; Langley, Monica R; Simon, Whitney L; Yoon, Hyesook; Kleppe, Laurel; Lanza, Ian R; LeBrasseur, Nathan K; Matveyenko, Aleksey; Scarisbrick, Isobel A Neurobiology of disease 32376475 2020 07
Radiation Induced Metabolic Alterations Associate With Tumor Aggressiveness and Poor Outcome in Glioblastoma. Gupta, Kshama; Vuckovic, Ivan; Zhang, Song; Xiong, Yuning; Carlson, Brett L; Jacobs, Joshua; Olson, Ian; Petterson, Xuan-Mai; Macura, Slobodan I; Sarkaria, Jann; Burns, Terry C Frontiers in oncology 32432031 2020
Activation of Astrocytes in the Dorsomedial Striatum Facilitates Transition From Habitual to Goal-Directed Reward-Seeking Behavior. Kang, Seungwoo; Hong, Sa-Ik; Lee, Jeyeon; Peyton, Lee; Baker, Matthew; Choi, Sun; Kim, Hyunjung; Chang, Su-Youne; Choi, Doo-Sup Biological psychiatry 32564901 2020 11 15
IRE1A Stimulates Hepatocyte-Derived Extracellular Vesicles That Promote Inflammation in Mice With Steatohepatitis. Dasgupta, Debanjali; Nakao, Yasuhiko; Mauer, Amy S; Thompson, Jill M; Sehrawat, Tejasav S; Liao, Chieh-Yu; Krishnan, Anuradha; Lucien, Fabrice; Guo, Qianqian; Liu, Mengfei; Xue, Fei; Fukushima, Masanori; Katsumi, Tomohiro; Bansal, Aditya; Pandey, Mukesh K; Maiers, Jessica L; DeGrado, Timothy; Ibrahim, Samar H; Revzin, Alexander; Pavelko, Kevin D; Barry, Michael A; Kaufman, Randal J; Malhi, Harmeet Gastroenterology 32574624 2020 10
Skeletal muscle: A review of molecular structure and function, in health and disease. Mukund, Kavitha; Subramaniam, Shankar Wiley interdisciplinary reviews. Systems biology and medicine 31407867 2020 01
Sugar Alcohols Have a Key Role in Pathogenesis of Chronic Liver Disease and Hepatocellular Carcinoma in Whole Blood and Liver Tissues. Ismail, Israa T; Fiehn, Oliver; Elfert, Ashraf; Helal, Marwa; Salama, Ibrahim; El-Said, Hala Cancers 32092943 2020 Feb 19
Metabolomics to reveal biomarkers and pathways of preterm birth: a systematic review and epidemiologic perspective. Carter, R A; Pan, K; Harville, E W; McRitchie, S; Sumner, S Metabolomics : Official journal of the Metabolomic Society 31506796 2019 09 10
Lipidomics for wildlife disease etiology and biomarker discovery: a case study of pansteatitis outbreak in South Africa. Koelmel, Jeremy P; Ulmer, Candice Z; Fogelson, Susan; Jones, Christina M; Botha, Hannes; Bangma, Jacqueline T; Guillette, Theresa C; Luus-Powell, Wilmien J; Sara, Joseph R; Smit, Willem J; Albert, Korin; Miller, Harmony A; Guillette, Matthew P; Olsen, Berkley C; Cochran, Jason A; Garrett, Timothy J; Yost, Richard A; Bowden, John A Metabolomics : Official journal of the Metabolomic Society 30838461 2019 03 05
Single-walled carbon nanotubes repress viral-induced defense pathways through oxidative stress. Chen, Hao; Humes, Sara T; Robinson, Sarah E; Loeb, Julia C; Sabaraya, Indu V; Saleh, Navid B; Khattri, Ram B; Merritt, Matthew E; Martyniuk, Christopher J; Lednicky, John A; Sabo-Attwood, Tara Nanotoxicology 31328592 2019 11
Inhibition of Anaplerotic Glutaminolysis Underlies Selenite Toxicity in Human Lung Cancer. Bruntz, Ronald C; Belshoff, Alex C; Zhang, Yan; Macedo, Jessica K A; Higashi, Richard M; Lane, Andrew N; Fan, Teresa W-M Proteomics 31298457 2019 11
Stable Isotope-Resolved Metabolomics by NMR. Lin, Penghui; Lane, Andrew N; Fan, Teresa W-M Methods in molecular biology (Clifton, N.J.) 31463844 2019
JAK2-mutant hematopoietic cells display metabolic alterations that can be targeted to treat myeloproliferative neoplasms. Rao, Tata Nageswara; Hansen, Nils; Hilfiker, Julian; Rai, Shivam; Majewska, Julia-Magdalena; Leković, Danijela; Gezer, Deniz; Andina, Nicola; Galli, Serena; Cassel, Teresa; Geier, Florian; Delezie, Julien; Nienhold, Ronny; Hao-Shen, Hui; Beisel, Christian; Di Palma, Serena; Dimeloe, Sarah; Trebicka, Jonel; Wolf, Dominik; Gassmann, Max; Fan, Teresa W-M; Lane, Andrew N; Handschin, Christoph; Dirnhofer, Stefan; Kröger, Nicolaus; Hess, Christoph; Radimerski, Thomas; Koschmieder, Steffen; Čokić, Vladan P; Skoda, Radek C Blood 31511238 2019 11 21
Utilizing Untargeted Ion Mobility-Mass Spectrometry To Profile Changes in the Gut Metabolome Following Biliary Diversion Surgery. Poland, James C; Schrimpe-Rutledge, Alexandra C; Sherrod, Stacy D; Flynn, Charles Robb; McLean, John A Analytical chemistry 31573190 2019 11 19
Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Barupal, Dinesh Kumar; Fiehn, Oliver Environmental health perspectives 31557052 2019 09
Mitochondrial ATP synthase β-subunit production rate and ATP synthase specific activity are reduced in skeletal muscle of humans with obesity. Tran, Lee; Langlais, Paul R; Hoffman, Nyssa; Roust, Lori; Katsanos, Christos S Experimental physiology 30362197 2019 01
Insulin deficiency and intranasal insulin alter brain mitochondrial function: a potential factor for dementia in diabetes. Ruegsegger, Gregory N; Manjunatha, Shankarappa; Summer, Priska; Gopala, Srinivas; Zabeilski, Piotr; Dasari, Surendra; Vanderboom, Patrick M; Lanza, Ian R; Klaus, Katherine A; Nair, K Sreekumaran FASEB journal : official publication of the Federation of American Societies for Experimental Biology 30676773 2019 03
A novel natural tracer method to measure complex carbohydrate metabolism. Basu, Rita; Schiavon, Michele; Petterson, Xuan-Mai; Hinshaw, Ling; Slama, Michael; Carter, Rickey; Man, Chiara Dalla; Cobelli, Claudio; Basu, Ananda American journal of physiology. Endocrinology and metabolism 31265327 2019 09 01
Attenuated activation of the unfolded protein response following exercise in skeletal muscle of older adults. Hart, Corey R; Ryan, Zachary C; Pfaffenbach, Kyle T; Dasari, Surendra; Parvizi, Mojtaba; Lalia, Antigoni Z; Lanza, Ian R Aging 31525732 2019 09 14
Exercise and metformin counteract altered mitochondrial function in the insulin-resistant brain. Ruegsegger, Gregory N; Vanderboom, Patrick M; Dasari, Surendra; Klaus, Katherine A; Kabiraj, Parijat; McCarthy, Christina B; Lucchinetti, Claudia F; Nair, K Sreekumaran JCI insight 31534057 2019 09 19
Structure Annotation of All Mass Spectra in Untargeted Metabolomics. Blaženović, Ivana; Kind, Tobias; Sa, Michael R; Ji, Jian; Vaniya, Arpana; Wancewicz, Benjamin; Roberts, Bryan S; Torbašinović, Hrvoje; Lee, Tack; Mehta, Sajjan S; Showalter, Megan R; Song, Hosook; Kwok, Jessica; Jahn, Dieter; Kim, Jayoung; Fiehn, Oliver Analytical chemistry 30608141 2019 02 05
Characterization of the antibacterial activity of Bald's eyesalve against drug resistant Staphylococcus aureus and Pseudomonas aeruginosa. Fuchs, Amanda L; Weaver Jr, Alan J; Tripet, Brian P; Ammons, Mary Cloud B; Teintze, Martin; Copié, Valérie PloS one 30485362 2018
Beyond Structure: Defining the Function of the Gut Using Omic Approaches for Rational Design of Personalized Therapeutics. Theriot, Casey M mSystems 29556548 2018 Mar-Apr
Amylases and Their Importance during Glycan Degradation: Genome Sequence Release of Salmonella Amylase Knockout Strains. Arabyan, Narine; Huang, Bihua C; Weimer, Bart C Genome announcements 28522713 2017 May 18
Metabolite Measurement: Pitfalls to Avoid and Practices to Follow. Lu, Wenyun; Su, Xiaoyang; Klein, Matthias S; Lewis, Ian A; Fiehn, Oliver; Rabinowitz, Joshua D Annual review of biochemistry 28654323 2017 Jun 20
Integration of metabolomics, transcriptomics, and microRNA expression profiling reveals a miR-143-HK2-glucose network underlying zinc-deficiency-associated esophageal neoplasia. Fong, Louise Y; Jing, Ruiyan; Smalley, Karl J; Taccioli, Cristian; Fahrmann, Johannes; Barupal, Dinesh K; Alder, Hansjuerg; Farber, John L; Fiehn, Oliver; Croce, Carlo M Oncotarget 29137232 2017 Oct 10
Disposition of intravenously or orally administered silver nanoparticles in pregnant rats and the effect on the biochemical profile in urine. Fennell, Timothy R; Mortensen, Ninell P; Black, Sherry R; Snyder, Rodney W; Levine, Keith E; Poitras, Eric; Harrington, James M; Wingard, Christopher J; Holland, Nathan A; Pathmasiri, Wimal; Sumner, Susan C J Journal of applied toxicology : JAT 27696470 2017 May
Serum Metabolomic Profiles in Neonatal Mice following Oral Brominated Flame Retardant Exposures to Hexabromocyclododecane (HBCD) Alpha, Gamma, and Commercial Mixture. Szabo, David T; Pathmasiri, Wimal; Sumner, Susan; Birnbaum, Linda S Environmental health perspectives 27814246 2017 Apr
Metabolic profiling of a chronic kidney disease cohort reveals metabolic phenotype more likely to benefit from a probiotic. Saggi, Subodh J; Mercier, Kelly; Gooding, Jessica R; Friedman, Eli; Vyas, Usha; Ranganathan, Natarajan; Ranganathan, Pari; McRitchie, Susan; Sumner, Susan International journal of probiotics & prebiotics 30774576 2017
The future of NMR-based metabolomics. Markley, John L; Brüschweiler, Rafael; Edison, Arthur S; Eghbalnia, Hamid R; Powers, Robert; Raftery, Daniel; Wishart, David S Current opinion in biotechnology 27580257 2017 02
Multiplatform Mass Spectrometry-Based Approach Identifies Extracellular Glycolipids of the Yeast Rhodotorula babjevae UCDFST 04-877. Cajka, Tomas; Garay, Luis A; Sitepu, Irnayuli R; Boundy-Mills, Kyria L; Fiehn, Oliver Journal of natural products 27669091 2016 10 28
An ω-3-enriched diet alone does not attenuate CCl4-induced hepatic fibrosis. Harris, Todd R; Kodani, Sean; Yang, Jun; Imai, Denise M; Hammock, Bruce D The Journal of nutritional biochemistry 27732914 2016 12
Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats. Barupal, Dinesh K; Pinkerton, Kent E; Hood, Carol; Kind, Tobias; Fiehn, Oliver Chemical research in toxicology 27788581 2016 11 21
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The Modulating Effects of Cardiac Resynchronization Therapy on Myocardial Metabolism in Heart Failure. Xu, Yi-Zhou; Chen, Chao-Feng; Chen, Bin; Gao, Xiao-Fei; Hua, Wei; Cha, Yong-Mei; Dzeja, Petras P Pacing and clinical electrophysiology : PACE 27807872 2016 Dec
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A chemical proteomic atlas of brain serine hydrolases identifies cell type-specific pathways regulating neuroinflammation. Viader, Andreu; Ogasawara, Daisuke; Joslyn, Christopher M; Sanchez-Alavez, Manuel; Mori, Simone; Nguyen, William; Conti, Bruno; Cravatt, Benjamin F eLife 26779719 2016 Jan 18
Magic Angle Spinning NMR Metabolomics. Hu, Jian Zhi Metabolomics : open access 28042496 2016 Jun
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Plasma Metabolite Profiles Following Consumption of Animal Protein and Soybean-Based Diet in Hypercholesterolemic Postmenopausal Women. Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H Metabolites 35323651 2022 Feb 25
Plasma Metabolite Response to Simple, Refined and Unrefined Carbohydrate-Enriched Diets in Older Adults-Randomized Controlled Crossover Trial. Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H Metabolites 35736480 2022 Jun 15
Lipidomics of cyclophosphamide 4-hydroxylation in patients receiving post-transplant cyclophosphamide. Navarro, Sandi L; Zheng, Zihan; Randolph, Timothy W; Nakamura, Ryotaro; Sandmaier, Brenda M; Hockenbery, David; McCune, Jeannine S Clinical and translational science 36088654 2022 Nov
CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics. Rainey, Markace A; Watson, Chandler A; Asef, Carter K; Foster, Makayla R; Baker, Erin S; Fernández, Facundo M Analytical chemistry 36473057 2022 Dec 20
An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated NMR chemical shifts. Yesiltepe, Yasemin; Govind, Niranjan; Metz, Thomas O; Renslow, Ryan S Journal of cheminformatics 36138446 2022 Sep 22
High-confidence structural annotation of metabolites absent from spectral libraries. Hoffmann, Martin A; Nothias, Louis-Félix; Ludwig, Marcus; Fleischauer, Markus; Gentry, Emily C; Witting, Michael; Dorrestein, Pieter C; Dührkop, Kai; Böcker, Sebastian Nature biotechnology 34650271 2022 03
Native metabolomics identifies the rivulariapeptolide family of protease inhibitors. Reher, Raphael; Aron, Allegra T; Fajtová, Pavla; Stincone, Paolo; Wagner, Berenike; Pérez-Lorente, Alicia I; Liu, Chenxi; Shalom, Ido Y Ben; Bittremieux, Wout; Wang, Mingxun; Jeong, Kyowon; Matos-Hernandez, Marie L; Alexander, Kelsey L; Caro-Diaz, Eduardo J; Naman, C Benjamin; Scanlan, J H William; Hochban, Phil M M; Diederich, Wibke E; Molina-Santiago, Carlos; Romero, Diego; Selim, Khaled A; Sass, Peter; Brötz-Oesterhelt, Heike; Hughes, Chambers C; Dorrestein, Pieter C; O'Donoghue, Anthony J; Gerwick, William H; Petras, Daniel Nature communications 35941113 2022 Aug 08
Network Approaches to Integrate Analyses of Genetics and Metabolomics Data with Applications to Fetal Programming Studies. Kuang, Alan; Hayes, M Geoffrey; Hivert, Marie-France; Balasubramanian, Raji; Lowe Jr, William L; Scholtens, Denise M Metabolites 35736446 2022 Jun 02
Mechanism-aware imputation: a two-step approach in handling missing values in metabolomics. Dekermanjian, Jonathan P; Shaddox, Elin; Nandy, Debmalya; Ghosh, Debashis; Kechris, Katerina BMC bioinformatics 35578165 2022 May 16
Using MetaboAnalyst 5.0 for LC-HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data. Pang, Zhiqiang; Zhou, Guangyan; Ewald, Jessica; Chang, Le; Hacariz, Orcun; Basu, Niladri; Xia, Jianguo Nature protocols 35715522 2022 Aug
Microbial Metabolite 3-Indolepropionic Acid Mediates Immunosuppression. Guijas, Carlos; Horton, Lucy E; Hoang, Linh; Domingo-Almenara, Xavier; Billings, Elizabeth M; Ware, Brian C; Sullivan, Brian; Siuzdak, Gary Metabolites 35888769 2022 Jul 14
Multiomic characterization of pancreatic cancer-associated macrophage polarization reveals deregulated metabolic programs driven by the GM-CSF-PI3K pathway. Boyer, Seth; Lee, Ho-Joon; Steele, Nina; Zhang, Li; Sajjakulnukit, Peter; Andren, Anthony; Ward, Matthew H; Singh, Rima; Basrur, Venkatesha; Zhang, Yaqing; Nesvizhskii, Alexey I; Pasca di Magliano, Marina; Halbrook, Christopher J; Lyssiotis, Costas A eLife 35156921 2022 Feb 14
The impact of methodological choices when developing predictive models using urinary metabolite data. Krstic, Nikolas; Multani, Kevin; Wishart, David S; Blydt-Hansen, Tom; Cohen Freue, Gabriela V Statistics in medicine 35567357 2022 Aug 15
In vivo deep network tracing reveals phosphofructokinase-mediated coordination of biosynthetic pathway activity in the myocardium. Fulghum, Kyle L; Audam, Timothy N; Lorkiewicz, Pawel K; Zheng, Yuting; Merchant, Michael; Cummins, Timothy D; Dean, William L; Cassel, Teresa A; Fan, Teresa W M; Hill, Bradford G Journal of molecular and cellular cardiology 34487754 2022 01
Identification of circulating plasma ceramides as a potential sexually dimorphic biomarker of pancreatic cancer-induced cachexia. Chakedis, Jeffery M; Dillhoff, Mary E; Schmidt, Carl R; Rajasekera, Priyani V; Evans, David C; Williams, Terence M; Guttridge, Denis C; Talbert, Erin E JCSM rapid communications 36591536 2022
Age-Independent Cardiac Protection by Pharmacological Activation of Beclin-1 During Endotoxemia and Its Association With Energy Metabolic Reprograming in Myocardium-A Targeted Metabolomics Study. Kim, Matthew; Nikouee, Azadeh; Zou, Raymond; Ren, Di; He, Zhibin; Li, Ji; Wang, Lu; Djukovic, Danijel; Raftery, Daniel; Purcell, Hayley; Promislow, Daniel; Sun, Yuxiao; Goodarzi, Mohammad; Zhang, Qing-Jun; Liu, Zhi-Ping; Zang, Qun Sophia Journal of the American Heart Association 35861821 2022 Jul 19
Targeting malaria parasites with novel derivatives of azithromycin. Burns, Amy L; Sleebs, Brad E; Gancheva, Maria; McLean, Kimberley T; Siddiqui, Ghizal; Venter, Henrietta; Beeson, James G; O'Handley, Ryan; Creek, Darren J; Ma, Shutao; Frölich, Sonja; Goodman, Christopher D; McFadden, Geoffrey I; Wilson, Danny W Frontiers in cellular and infection microbiology 36530422 2022
Ex Vivo Hepatic Perfusion Through the Portal Vein in Mouse. Giacalone, Anthony G; Merritt, Matthew E; Ragavan, Mukundan Journal of visualized experiments : JoVE 35343950 2022 Mar 09
Metabolic signatures associated with oncolytic myxoma viral infections. Mahar, Rohit; Ragavan, Mukundan; Chang, Mario C; Hardiman, Savannah; Moussatche, Nissin; Behar, Adam; Renne, Rolf; Merritt, Matthew E Scientific reports 35871072 2022 Jul 23
Evaluating the Accuracy of the QCEIMS Approach for Computational Prediction of Electron Ionization Mass Spectra of Purines and Pyrimidines. Lee, Jesi; Kind, Tobias; Tantillo, Dean Joseph; Wang, Lee-Ping; Fiehn, Oliver Metabolites 35050190 2022 Jan 12
SS-31 does not prevent or reduce muscle atrophy 7 days after a 65 kdyne contusion spinal cord injury in young male mice. Graham, Zachary A; DeBerry, Jennifer J; Cardozo, Christopher P; Bamman, Marcas M Physiological reports 35611788 2022 May
How Well Can We Predict Mass Spectra from Structures? Benchmarking Competitive Fragmentation Modeling for Metabolite Identification on Untrained Tandem Mass Spectra. Bremer, Parker Ladd; Vaniya, Arpana; Kind, Tobias; Wang, Shunyang; Fiehn, Oliver Journal of chemical information and modeling 36043939 2022 Sep 12
Beyond the Ground State: Predicting Electron Ionization Mass Spectra Using Excited-State Molecular Dynamics. Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver Journal of chemical information and modeling 36107950 2022 Sep 26
Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology. Sies, Helmut; Belousov, Vsevolod V; Chandel, Navdeep S; Davies, Michael J; Jones, Dean P; Mann, Giovanni E; Murphy, Michael P; Yamamoto, Masayuki; Winterbourn, Christine Nature reviews. Molecular cell biology 35190722 2022 Jul
In Silico Collision Cross Section Calculations to Aid Metabolite Annotation. Das, Susanta; Tanemura, Kiyoto Aramis; Dinpazhoh, Laleh; Keng, Mithony; Schumm, Christina; Leahy, Lydia; Asef, Carter K; Rainey, Markace; Edison, Arthur S; Fernández, Facundo M; Merz Jr, Kenneth M Journal of the American Society for Mass Spectrometry 35378036 2022 May 04
An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics. Shaver, Amanda O; Garcia, Brianna M; Gouveia, Goncalo J; Morse, Alison M; Liu, Zihao; Asef, Carter K; Borges, Ricardo M; Leach 3rd, Franklin E; Andersen, Erik C; Amster, I Jonathan; Fernández, Facundo M; Edison, Arthur S; McIntyre, Lauren M Frontiers in molecular biosciences 36438654 2022
Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's disease. Caldwell, Andrew B; Liu, Qing; Zhang, Can; Schroth, Gary P; Galasko, Douglas R; Rynearson, Kevin D; Tanzi, Rudolph E; Yuan, Shauna H; Wagner, Steven L; Subramaniam, Shankar Alzheimer's & dementia : the journal of the Alzheimer's Association 35084109 2022 Nov
Bacillus subtilis biofilm matrix components target seed oil bodies to promote growth and anti-fungal resistance in melon. Berlanga-Clavero, M V; Molina-Santiago, C; Caraballo-Rodríguez, A M; Petras, D; Díaz-Martínez, L; Pérez-García, A; de Vicente, A; Carrión, V J; Dorrestein, P C; Romero, D Nature microbiology 35668112 2022 Jul
Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines. Nanni, Adalena V; Morse, Alison M; Newman, Jeremy R B; Choquette, Nicole E; Wedow, Jessica M; Liu, Zihao; Leakey, Andrew D B; Conesa, Ana; Ainsworth, Elizabeth A; McIntyre, Lauren M Genetics 35579358 2022 Jul 30
Predictive Modeling of Alzheimer's and Parkinson's Disease Using Metabolomic and Lipidomic Profiles from Cerebrospinal Fluid. Hwangbo, Nathan; Zhang, Xinyu; Raftery, Daniel; Gu, Haiwei; Hu, Shu-Ching; Montine, Thomas J; Quinn, Joseph F; Chung, Kathryn A; Hiller, Amie L; Wang, Dongfang; Fei, Qiang; Bettcher, Lisa; Zabetian, Cyrus P; Peskind, Elaine R; Li, Ge; Promislow, Daniel E L; Davis, Marie Y; Franks, Alexander Metabolites 35448464 2022 Mar 22
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Petras, Daniel; Phelan, Vanessa V; Acharya, Deepa; Allen, Andrew E; Aron, Allegra T; Bandeira, Nuno; Bowen, Benjamin P; Belle-Oudry, Deirdre; Boecker, Simon; Cummings Jr, Dale A; Deutsch, Jessica M; Fahy, Eoin; Garg, Neha; Gregor, Rachel; Handelsman, Jo; Navarro-Hoyos, Mirtha; Jarmusch, Alan K; Jarmusch, Scott A; Louie, Katherine; Maloney, Katherine N; Marty, Michael T; Meijler, Michael M; Mizrahi, Itzhak; Neve, Rachel L; Northen, Trent R; Molina-Santiago, Carlos; Panitchpakdi, Morgan; Pullman, Benjamin; Puri, Aaron W; Schmid, Robin; Subramaniam, Shankar; Thukral, Monica; Vasquez-Castro, Felipe; Dorrestein, Pieter C; Wang, Mingxun Nature methods 34862502 2022 Feb
foodMASST a mass spectrometry search tool for foods and beverages. West, Kiana A; Schmid, Robin; Gauglitz, Julia M; Wang, Mingxun; Dorrestein, Pieter C NPJ science of food 35444218 2022 Apr 20
An Untargeted Metabolomics Workflow that Scales to Thousands of Samples for Population-Based Studies. Stancliffe, Ethan; Schwaiger-Haber, Michaela; Sindelar, Miriam; Murphy, Matthew J; Soerensen, Mette; Patti, Gary J Analytical chemistry 36475608 2022 Dec 20
Profiling Parkinson's disease cognitive phenotypes via resting-state magnetoencephalography. Simon, Olivier B; Rojas, Donald C; Ghosh, Debashis; Yang, Xinyi; Rogers, Sarah E; Martin, Christine S; Holden, Samantha K; Kluger, Benzi M; Buard, Isabelle Journal of neurophysiology 34936515 2022 Jan 01
Neutral Loss Mass Spectral Data Enhances Molecular Similarity Analysis in METLIN. Aisporna, Aries; Benton, H Paul; Chen, Andy; Derks, Rico J E; Galano, Jean Marie; Giera, Martin; Siuzdak, Gary Journal of the American Society for Mass Spectrometry 35174708 2022 Mar 02
Memory-Efficient Searching of Gas-Chromatography Mass Spectra Accelerated by Prescreening. Smirnov, Aleksandr; Liao, Yunfei; Du, Xiuxia Metabolites 35736424 2022 May 29
Modular and mechanistic changes across stages of colorectal cancer. Rahiminejad, Sara; Maurya, Mano R; Mukund, Kavitha; Subramaniam, Shankar BMC cancer 35448980 2022 Apr 21
Human Norovirus Triggers Primary B Cell Immune Activation In Vitro. Mirabelli, Carmen; Jones, Melissa K; Young, Vivienne L; Kolawole, Abimbola O; Owusu, Irene; Shan, Mengrou; Abuaita, Basel; Turula, Holly; Trevino, Jose G; Grigorova, Irina; Lundy, Steven K; Lyssiotis, Costas A; Ward, Vernon K; Karst, Stephanie M; Wobus, Christiane E mBio 35404121 2022 Apr 26
Fecal metabolomics reveals products of dysregulated proteolysis and altered microbial metabolism in obesity-related osteoarthritis. Rushing, B R; McRitchie, S; Arbeeva, L; Nelson, A E; Azcarate-Peril, M A; Li, Y-Y; Qian, Y; Pathmasiri, W; Sumner, S C J; Loeser, R F Osteoarthritis and cartilage 34718137 2022 Jan
Emerging technologies and their impact on regulatory science. Anklam, Elke; Bahl, Martin Iain; Ball, Robert; Beger, Richard D; Cohen, Jonathan; Fitzpatrick, Suzanne; Girard, Philippe; Halamoda-Kenzaoui, Blanka; Hinton, Denise; Hirose, Akihiko; Hoeveler, Arnd; Honma, Masamitsu; Hugas, Marta; Ishida, Seichi; Kass, George En; Kojima, Hajime; Krefting, Ira; Liachenko, Serguei; Liu, Yan; Masters, Shane; Marx, Uwe; McCarthy, Timothy; Mercer, Tim; Patri, Anil; Pelaez, Carmen; Pirmohamed, Munir; Platz, Stefan; Ribeiro, Alexandre Js; Rodricks, Joseph V; Rusyn, Ivan; Salek, Reza M; Schoonjans, Reinhilde; Silva, Primal; Svendsen, Clive N; Sumner, Susan; Sung, Kyung; Tagle, Danilo; Tong, Li; Tong, Weida; Eijnden-van-Raaij, Janny van den; Vary, Neil; Wang, Tao; Waterton, John; Wang, May; Wen, Hairuo; Wishart, David; Yuan, Yinyin; Slikker Jr, William Experimental biology and medicine (Maywood, N.J.) 34783606 2022 01
Disrupting the MYC-TFEB Circuit Impairs Amino Acid Homeostasis and Provokes Metabolic Anergy. Fernandez, Mario R; Schaub, Franz X; Yang, Chunying; Li, Weimin; Yun, Seongseok; Schaub, Stephanie K; Dorsey, Frank C; Liu, Min; Steeves, Meredith A; Ballabio, Andrea; Tzankov, Alexandar; Chen, Zhihua; Koomen, John M; Berglund, Anders E; Cleveland, John L Cancer research 35149590 2022 Apr 01
A Micro-Scale Analytical Method for Determining Glycogen Turnover by NMR and FTMS. Scott, Timothy L; Zhu, Juan; Cassel, Teresa A; Vicente-Muñoz, Sara; Lin, Penghui; Higashi, Richard M; Lane, Andrew N; Fan, Teresa W-M Metabolites 36005633 2022 Aug 18
Products of gut microbial Toll/interleukin-1 receptor domain NADase activities in gnotobiotic mice and Bangladeshi children with malnutrition. Weagley, James S; Zaydman, Mark; Venkatesh, Siddarth; Sasaki, Yo; Damaraju, Neha; Yenkin, Alex; Buchser, William; Rodionov, Dmitry A; Osterman, Andrei; Ahmed, Tahmeed; Barratt, Michael J; DiAntonio, Aaron; Milbrandt, Jeffrey; Gordon, Jeffrey I Cell reports 35476981 2022 Apr 26
Metabolite Production in Alkanna tinctoria Links Plant Development with the Recruitment of Individual Members of Microbiome Thriving at the Root-Soil Interface. Csorba, Cintia; Rodić, Nebojša; Zhao, Yanyan; Antonielli, Livio; Brader, Günter; Vlachou, Angeliki; Tsiokanos, Evangelia; Lalaymia, Ismahen; Declerck, Stéphane; Papageorgiou, Vassilios P; Assimopoulou, Andreana N; Sessitsch, Angela mSystems 36069453 2022 Oct 26
Detecting de novo Hepatic Ketogenesis Using Hyperpolarized [2-13C] Pyruvate. Ragavan, Mukundan; McLeod, Marc A; Rushin, Anna; Merritt, Matthew E Frontiers in physiology 35197867 2022
Lipogenesis mediated by OGR1 regulates metabolic adaptation to acid stress in cancer cells via autophagy. Pillai, Smitha; Mahmud, Iqbal; Mahar, Rohit; Griffith, Crystal; Langsen, Michael; Nguyen, Jonathan; Wojtkowiak, Jonathan W; Swietach, Pawel; Gatenby, Robert A; Bui, Marilyn M; Merritt, Matthew E; McDonald, Patricia; Garrett, Timothy J; Gillies, Robert J Cell reports 35545051 2022 May 10
Acyl-CoA Identification in Mouse Liver Samples Using the In Silico CoA-Blast Tandem Mass Spectral Library. Keshet, Uri; Kind, Tobias; Lu, Xinchen; Devi, Sarita; Fiehn, Oliver Analytical chemistry 35119811 2022 Feb 15
Mouse models of NADK2 deficiency analyzed for metabolic and gene expression changes to elucidate pathophysiology. Murray, G C; Bais, P; Hatton, C L; Tadenev, A L D; Hoffmann, B R; Stodola, T J; Morelli, K H; Pratt, S L; Schroeder, D; Doty, R; Fiehn, O; John, S W M; Bult, C J; Cox, G A; Burgess, R W Human molecular genetics 35796562 2022 Nov 28
High-Throughput Production of Diverse Xenobiotic Metabolites with Cytochrome P450-Transduced Huh7 Hepatoma Cell Lines. Lee, Choon-Myung; Liu, Ken H; Singer, Grant; Miller, Gary W; Li, Shuzhao; Jones, Dean P; Morgan, Edward T Drug metabolism and disposition: the biological fate of chemicals 35752443 2022 Sep
Computer-aided drug design, quantum-mechanical methods for biological problems. Manathunga, Madushanka; Götz, Andreas W; Merz Jr, Kenneth M Current opinion in structural biology 35779437 2022 Aug
CFM-ID 4.0 - a web server for accurate MS-based metabolite identification. Wang, Fei; Allen, Dana; Tian, Siyang; Oler, Eponine; Gautam, Vasuk; Greiner, Russell; Metz, Thomas O; Wishart, David S Nucleic acids research 35610037 2022 Jul 05
A generalized likelihood-based Bayesian approach for scalable joint regression and covariance selection in high dimensions. Samanta, Srijata; Khare, Kshitij; Michailidis, George Statistics and computing 36713060 2022 Jun
Plasma Amino Acids and Risk of Impaired Lower-Extremity Function and Role of Dietary Intake: A Nested Case-Control Study in Older Adults. Caballero, Francisco Félix; Struijk, Ellen A; Buño, Antonio; Vega-Cabello, Verónica; Rodríguez-Artalejo, Fernando; Lopez-Garcia, Esther Gerontology 33965943 2022
Trichloroethylene modifies energy metabolites in the amniotic fluid of Wistar rats. Su, Anthony L; Harris, Sean M; Elkin, Elana R; Karnovsky, Alla; Colacino, Justin A; Loch-Caruso, Rita Reproductive toxicology (Elmsford, N.Y.) 35301063 2022 Apr
Multiassay nutritional metabolomics profiling of low vitamin A status versus adequacy is characterized by reduced plasma lipid mediators among lactating women in the Philippines: A pilot study. Johnson, Catherine M; Rosario, Rodrigo; Brito, Alex; Agrawal, Karan; Fanter, Rob; Lietz, Georg; Haskell, Marjorie; Engle-Stone, Reina; Newman, John W; La Frano, Michael R Nutrition research (New York, N.Y.) 35732076 2022 Aug
Intravenous administration of three multiwalled carbon nanotubes to female rats and their effect on urinary biochemical profile. Mortensen, Ninell P; Snyder, Rodney W; Pathmasiri, Wimal; Moreno Caffaro, Maria; Sumner, Susan J; Fennell, Timothy R Journal of applied toxicology : JAT 34569639 2022 03
Data-Driven Soft Independent Modeling of Class Analogy in Paper Spray Ionization Mass Spectrometry-Based Metabolomics for Rapid Detection of Prostate Cancer. Pinto, Frederico G; Mahmud, Iqbal; Rubio, Vanessa Y; Máquina, Ademar Domingos Viagem; Furtado Durans, Anízia Fausta; Neto, Waldomiro Borges; Garrett, Timothy J Analytical chemistry 35060703 2022 Feb 01
A rapid and robust method for amino acid quantification using a simple N-hydroxysuccinimide ester derivatization and liquid chromatography-ion mobility-mass spectrometry. Domenick, Taylor M; Jones, Austin L; Kemperman, Robin H J; Yost, Richard A Analytical and bioanalytical chemistry 35338375 2022 Jul
Reducing ether lipids improves Drosophila overnutrition-associated pathophysiology phenotypes via a switch from lipid storage to beta-oxidation. Santoro, Christie; O'Toole, Ashley; Finsel, Pilar; Alvi, Arsalan; Musselman, Laura Palanker Scientific reports 35906462 2022 Jul 29
Analyses of pseudoexfoliation aqueous humor lipidome. Collao, Vanessa; Morris, Jada; Chauhan, Muhammad Zain; Abdelrahman, Leila; Martínez-de-la-Casa, Jose María; Vidal-Villegas, Beatriz; Burgos-Blasco, Barbara; Bhattacharya, Sanjoy K Molecular omics 35485348 2022 Jun 13
Single cell spatial analysis reveals the topology of immunomodulatory purinergic signaling in glioblastoma. Coy, Shannon; Wang, Shu; Stopka, Sylwia A; Lin, Jia-Ren; Yapp, Clarence; Ritch, Cecily C; Salhi, Lisa; Baker, Gregory J; Rashid, Rumana; Baquer, Gerard; Regan, Michael; Khadka, Prasidda; Cole, Kristina A; Hwang, Jaeho; Wen, Patrick Y; Bandopadhayay, Pratiti; Santi, Mariarita; De Raedt, Thomas; Ligon, Keith L; Agar, Nathalie Y R; Sorger, Peter K; Touat, Mehdi; Santagata, Sandro Nature communications 35973991 2022 Aug 16
Quantum Chemical Prediction of Electron Ionization Mass Spectra of Trimethylsilylated Metabolites. Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver Analytical chemistry 35006668 2022 Jan 25
Effects of Lean Pork on Microbiota and Microbial-Metabolite Trimethylamine-N-Oxide: A Randomized Controlled Non-Inferiority Feeding Trial Based on the Dietary Guidelines for Americans. Dhakal, Samitinjaya; Moazzami, Zahra; Perry, Cydne; Dey, Moul Molecular nutrition & food research 35182101 2022 May
Methods to capture proteomic and metabolomic signatures from cerebrospinal fluid and serum of healthy individuals. Lilley, Laura M; Sanche, Steven; Moore, Shepard C; Salemi, Michelle R; Vu, Dung; Iyer, Srinivas; Hengartner, Nicolas W; Mukundan, Harshini Scientific reports 35922450 2022 Aug 03
The Exposome and Toxicology: A Win-Win Collaboration. Barouki, Robert; Audouze, Karine; Becker, Christel; Blaha, Ludek; Coumoul, Xavier; Karakitsios, Spyros; Klanova, Jana; Miller, Gary W; Price, Elliott J; Sarigiannis, Denis Toxicological sciences : an official journal of the Society of Toxicology 34878125 2022 02 28
Evaluating Co-occurrence as a Criterion for Identification of Undocumented Xenobiotic Exposures in Human Metabolomics. Singer, Grant T; Liu, Ken H; Lee, Choon M; Miller, Gary W; Li, Shuzhao; Go, Young-Mi; Jones, Dean P; Morgan, Edward T FASEB journal : official publication of the Federation of American Societies for Experimental Biology 35567453 2022 May
The metabolome as a biomarker of aging in Drosophila melanogaster. Zhao, Xiaqing; Golic, Forrest T; Harrison, Benjamin R; Manoj, Meghna; Hoffman, Elise V; Simon, Neta; Johnson, Richard; MacCoss, Michael J; McIntyre, Lauren M; Promislow, Daniel E L Aging cell 35019203 2022 Feb
DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data. Colby, Sean M; Chang, Christine H; Bade, Jessica L; Nunez, Jamie R; Blumer, Madison R; Orton, Daniel J; Bloodsworth, Kent J; Nakayasu, Ernesto S; Smith, Richard D; Ibrahim, Yehia M; Renslow, Ryan S; Metz, Thomas O Analytical chemistry 35430813 2022 04 26
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The aryl hydrocarbon receptor activates ceramide biosynthesis in mice contributing to hepatic lipogenesis. Liu, Qing; Zhang, Limin; Allman, Erik L; Hubbard, Troy D; Murray, Iain A; Hao, Fuhua; Tian, Yuan; Gui, Wei; Nichols, Robert G; Smith, Philip B; Anitha, Mallappa; Perdew, Gary H; Patterson, Andrew D Toxicology 34097992 2021 06 30
Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence. Molina-Santiago, Carlos; Vela-Corcía, David; Petras, Daniel; Díaz-Martínez, Luis; Pérez-Lorente, Alicia Isabel; Sopeña-Torres, Sara; Pearson, John; Caraballo-Rodríguez, Andrés Mauricio; Dorrestein, Pieter C; de Vicente, Antonio; Romero, Diego Cell reports 34320359 2021 07 27
Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden. Caraballo-Rodríguez, Andrés Mauricio; Puckett, Sara P; Kyle, Kathleen E; Petras, Daniel; da Silva, Ricardo; Nothias, Louis-Félix; Ernst, Madeleine; van der Hooft, Justin J J; Tripathi, Anupriya; Wang, Mingxun; Balunas, Marcy J; Klassen, Jonathan L; Dorrestein, Pieter C mSystems 34342533 2021 Aug 31
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The maternal blood lipidome is indicative of the pathogenesis of severe preeclampsia. He, Bing; Liu, Yu; Maurya, Mano R; Benny, Paula; Lassiter, Cameron; Li, Hui; Subramaniam, Shankar; Garmire, Lana X Journal of lipid research 34547287 2021
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Multitissue 2H/13C flux analysis reveals reciprocal upregulation of renal gluconeogenesis in hepatic PEPCK-C-knockout mice. Rahim, Mohsin; Hasenour, Clinton M; Bednarski, Tomasz K; Hughey, Curtis C; Wasserman, David H; Young, Jamey D JCI insight 34156032 2021 06 22
The Glutaminase Inhibitor CB-839 (Telaglenastat) Enhances the Antimelanoma Activity of T-Cell-Mediated Immunotherapies. Varghese, Sruthy; Pramanik, Snigdha; Williams, Leila J; Hodges, Hannah R; Hudgens, Courtney W; Fischer, Grant M; Luo, Catherine K; Knighton, Barbara; Tan, Lin; Lorenzi, Philip L; Mackinnon, Andrew L; McQuade, Jennifer L; Hailemichael, Yared; Roszik, Jason; Peng, Weiyi; Vashisht Gopal, Y N Molecular cancer therapeutics 33361272 2021 03
Compound NSC84167 selectively targets NRF2-activated pancreatic cancer by inhibiting asparagine synthesis pathway. Dai, Bingbing; Augustine, Jithesh J; Kang, Ya'an; Roife, David; Li, Xinqun; Deng, Jenying; Tan, Lin; Rusling, Leona A; Weinstein, John N; Lorenzi, Philip L; Kim, Michael P; Fleming, Jason B Cell death & disease 34247201 2021 07 10
Plasma Ceramides and Risk of Impaired Lower-Extremity Function in Older Adults: A Nested Case-Control Study. Caballero, Francisco Félix; Struijk, Ellen A; Buño, Antonio; Rodríguez-Artalejo, Fernando; Lopez-Garcia, Esther The journals of gerontology. Series A, Biological sciences and medical sciences 32756936 2021 06 14
Intestinal-derived FGF15 protects against deleterious effects of vertical sleeve gastrectomy in mice. Bozadjieva-Kramer, Nadejda; Shin, Jae Hoon; Shao, Yikai; Gutierrez-Aguilar, Ruth; Li, Ziru; Heppner, Kristy M; Chiang, Samuel; Vargo, Sara G; Granger, Katrina; Sandoval, Darleen A; MacDougald, Ormond A; Seeley, Randy J Nature communications 34362888 2021 08 06
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Loss of Stearoyl-CoA desaturase 1 leads to cardiac dysfunction and lipotoxicity. Tuthill Ii, Bryon F; Quaglia, Christopher J; O'Hara, Eileen; Musselman, Laura Palanker The Journal of experimental biology 34423827 2021 09 15
Multifocal Renal Cell Carcinomas With Somatic IDH2 Mutation: Report of a Previously Undescribed Neoplasm. Merino, Maria J; Ricketts, Christopher J; Moreno, Vanessa; Yang, Ye; Fan, Teresa W M; Lane, Andrew N; Meltzer, Paul S; Vocke, Cathy D; Crooks, Daniel R; Linehan, William M The American journal of surgical pathology 33165095 2021 01
Innate immune activation by checkpoint inhibition in human patient-derived lung cancer tissues. Fan, Teresa Wm; Higashi, Richard M; Song, Huan; Daneshmandi, Saeed; Mahan, Angela L; Purdom, Matthew S; Bocklage, Therese J; Pittman, Thomas A; He, Daheng; Wang, Chi; Lane, Andrew N eLife 34406120 2021 08 18
Rapid analysis of S-adenosylmethionine (SAM) and S-adenosylhomocysteine (SAH) isotopologues in stable isotope-resolved metabolomics (SIRM) using direct infusion nanoelectrospray ultra-high-resolution Fourier transform mass spectrometry (DI-nESI-UHR-FTMS). Yang, JoonSeon; Fan, Teresa W M; Brandon, Jason A; Lane, Andrew N; Higashi, Richard M Analytica chimica acta 34556237 2021 Oct 09
Metabolic preconditioning in CD4+ T cells restores inducible immune tolerance in lupus-prone mice. Wilson, Christopher S; Stocks, Blair T; Hoopes, Emilee M; Rhoads, Jillian P; McNew, Kelsey L; Major, Amy S; Moore, Daniel J JCI insight 34403367 2021 Oct 08
Branched-chain α-ketoacids are preferentially reaminated and activate protein synthesis in the heart. Walejko, Jacquelyn M; Christopher, Bridgette A; Crown, Scott B; Zhang, Guo-Fang; Pickar-Oliver, Adrian; Yoneshiro, Takeshi; Foster, Matthew W; Page, Stephani; van Vliet, Stephan; Ilkayeva, Olga; Muehlbauer, Michael J; Carson, Matthew W; Brozinick, Joseph T; Hammond, Craig D; Gimeno, Ruth E; Moseley, M Arthur; Kajimura, Shingo; Gersbach, Charles A; Newgard, Christopher B; White, Phillip J; McGarrah, Robert W Nature communications 33723250 2021 03 15
A Metabolomic Signature of Glucagon Action in Healthy Individuals With Overweight/Obesity. Vega, Rick B; Whytock, Katie L; Gassenhuber, Johan; Goebel, Britta; Tillner, Joachim; Agueusop, Inoncent; Truax, Agnieszka D; Yu, Gongxin; Carnero, Elvis; Kapoor, Nidhi; Gardell, Stephen; Sparks, Lauren M; Smith, Steven R Journal of the Endocrine Society 34337278 2021 Sep 01
A metabolome atlas of the aging mouse brain. Ding, Jun; Ji, Jian; Rabow, Zachary; Shen, Tong; Folz, Jacob; Brydges, Christopher R; Fan, Sili; Lu, Xinchen; Mehta, Sajjan; Showalter, Megan R; Zhang, Ying; Araiza, Renee; Bower, Lynette R; Lloyd, K C Kent; Fiehn, Oliver Nature communications 34654818 2021 10 15
Hyperpolarized Dihydroxyacetone Is a Sensitive Probe of Hepatic Gluconeogenic State. Ragavan, Mukundan; McLeod, Marc A; Giacalone, Anthony G; Merritt, Matthew E Metabolites 34357335 2021 Jul 05
Measuring NQO1 Bioactivation Using [2H7]Glucose. Mahar, Rohit; Chang, Mario C; Merritt, Matthew E Cancers 34439319 2021 Aug 19
Quantum Chemistry Calculations for Metabolomics. Borges, Ricardo M; Colby, Sean M; Das, Susanta; Edison, Arthur S; Fiehn, Oliver; Kind, Tobias; Lee, Jesi; Merrill, Amy T; Merz Jr, Kenneth M; Metz, Thomas O; Nunez, Jamie R; Tantillo, Dean J; Wang, Lee-Ping; Wang, Shunyang; Renslow, Ryan S Chemical reviews 33979149 2021 05 26
A scalable workflow to characterize the human exposome. Hu, Xin; Walker, Douglas I; Liang, Yongliang; Smith, Matthew Ryan; Orr, Michael L; Juran, Brian D; Ma, Chunyu; Uppal, Karan; Koval, Michael; Martin, Greg S; Neujahr, David C; Marsit, Carmen J; Go, Young-Mi; Pennell, Kurt D; Miller, Gary W; Lazaridis, Konstantinos N; Jones, Dean P Nature communications 34552080 2021 09 22
Correction to "Chespa: Streamlining Expansive Chemical Space Evaluation of Molecular Sets". Nuñez, Jamie R; Mcgrady, Monee; Yesiltepe, Yasemin; Renslow, Ryan S; Metz, Thomas O Journal of chemical information and modeling 33871993 2021 May 24
CyProduct: A Software Tool for Accurately Predicting the Byproducts of Human Cytochrome P450 Metabolism. Tian, Siyang; Cao, Xuan; Greiner, Russell; Li, Carin; Guo, AnChi; Wishart, David S Journal of chemical information and modeling 34038112 2021 06 28
Mass Spectrometry Adduct Calculator. Blumer, Madison R; Chang, Christine H; Brayfindley, Evangelina; Nunez, Jamie R; Colby, Sean M; Renslow, Ryan S; Metz, Thomas O Journal of chemical information and modeling 34842435 2021 Dec 27
NMR Methods for Determining Lipid Turnover via Stable Isotope Resolved Metabolomics. Lin, Penghui; Dai, Li; Crooks, Daniel R; Neckers, Leonard M; Higashi, Richard M; Fan, Teresa W-M; Lane, Andrew N Metabolites 33805301 2021 Mar 29
Association Between Midpregnancy Polyunsaturated Fatty Acid Levels and Offspring Autism Spectrum Disorder in a California Population-Based Case-Control Study. Lyall, Kristen; Windham, Gayle C; Snyder, Nathaniel W; Kuskovsky, Rostislav; Xu, Peining; Bostwick, Anna; Robinson, Lucy; Newschaffer, Craig J American journal of epidemiology 33524118 2021 Feb 01
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Comprehensive Meta-Analysis of COVID-19 Global Metabolomics Datasets. Pang, Zhiqiang; Zhou, Guangyan; Chong, Jasmine; Xia, Jianguo Metabolites 33435351 2021 Jan 09
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights. Pang, Zhiqiang; Chong, Jasmine; Zhou, Guangyan; de Lima Morais, David Anderson; Chang, Le; Barrette, Michel; Gauthier, Carol; Jacques, Pierre-Étienne; Li, Shuzhao; Xia, Jianguo Nucleic acids research 34019663 2021 07 02
Single Quadrupole Multiple Fragment Ion Monitoring Quantitative Mass Spectrometry. Xue, Jingchuan; Derks, Rico J E; Webb, Bill; Billings, Elizabeth M; Aisporna, Aries; Giera, Martin; Siuzdak, Gary Analytical chemistry 34313111 2021 08 10
ADAP-KDB: A Spectral Knowledgebase for Tracking and Prioritizing Unknown GC-MS Spectra in the NIH's Metabolomics Data Repository. Smirnov, Aleksandr; Liao, Yunfei; Fahy, Eoin; Subramaniam, Shankar; Du, Xiuxia Analytical chemistry 34455770 2021 09 14
Targeting MYC-enhanced glycolysis for the treatment of small cell lung cancer. Cargill, Kasey R; Stewart, C Allison; Park, Elizabeth M; Ramkumar, Kavya; Gay, Carl M; Cardnell, Robert J; Wang, Qi; Diao, Lixia; Shen, Li; Fan, You-Hong; Chan, Wai Kin; Lorenzi, Philip L; Oliver, Trudy G; Wang, Jing; Byers, Lauren A Cancer & metabolism 34556188 2021 Sep 23
The deacylase SIRT5 supports melanoma viability by influencing chromatin dynamics. Giblin, William; Bringman-Rodenbarger, Lauren; Guo, Angela H; Kumar, Surinder; Monovich, Alexander C; Mostafa, Ahmed M; Skinner, Mary E; Azar, Michelle; Mady, Ahmed Sa; Chung, Carolina H; Kadambi, Namrata; Melong, Keith-Allen; Lee, Ho-Joon; Zhang, Li; Sajjakulnukit, Peter; Trefely, Sophie; Varner, Erika L; Iyer, Sowmya; Wang, Min; Wilmott, James S; Soyer, H Peter; Sturm, Richard A; Pritchard, Antonia L; Andea, Aleodor A; Scolyer, Richard A; Stark, Mitchell S; Scott, David A; Fullen, Douglas R; Bosenberg, Marcus W; Chandrasekaran, Sriram; Nikolovska-Coleska, Zaneta; Verhaegen, Monique E; Snyder, Nathaniel W; Rivera, Miguel N; Osterman, Andrei L; Lyssiotis, Costas A; Lombard, David B The Journal of clinical investigation 33945506 2021 06 15
The molecular and metabolic program by which white adipocytes adapt to cool physiologic temperatures. Mori, Hiroyuki; Dugan, Colleen E; Nishii, Akira; Benchamana, Ameena; Li, Ziru; Cadenhead 4th, Thomas S; Das, Arun K; Evans, Charles R; Overmyer, Katherine A; Romanelli, Steven M; Peterson, Sydney K; Bagchi, Devika P; Corsa, Callie A; Hardij, Julie; Learman, Brian S; El Azzouny, Mahmoud; Coon, Joshua J; Inoki, Ken; MacDougald, Ormond A PLoS biology 33979328 2021 05
Effect of Patent Foramen Ovale Closure After Stroke on Circulatory Biomarkers. Deng, Wenjun; McMullin, David; Inglessis-Azuaje, Ignacio; Locascio, Joseph J; Palacios, Igor F; Buonanno, Ferdinando S; Lo, Eng H; Ning, MingMing Neurology 33986139 2021 07 13
Hepcidin sequesters iron to sustain nucleotide metabolism and mitochondrial function in colorectal cancer epithelial cells. Schwartz, Andrew J; Goyert, Joshua W; Solanki, Sumeet; Kerk, Samuel A; Chen, Brandon; Castillo, Cristina; Hsu, Peggy P; Do, Brian T; Singhal, Rashi; Dame, Michael K; Lee, Ho-Joon; Spence, Jason R; Lakhal-Littleton, Samira; Vander Heiden, Matthew G; Lyssiotis, Costas A; Xue, Xiang; Shah, Yatrik M Nature metabolism 34155415 2021 Jul
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Soluble Epoxide Hydrolase Hepatic Deficiency Ameliorates Alcohol-Associated Liver Disease. Mello, Aline; Hsu, Ming-Fo; Koike, Shinichiro; Chu, Bryan; Cheng, Jeff; Yang, Jun; Morisseau, Christophe; Torok, Natalie J; Hammock, Bruce D; Haj, Fawaz G Cellular and molecular gastroenterology and hepatology 33068774 2021
Lipid remodeling in response to methionine stress in MDA-MBA-468 triple-negative breast cancer cells. Borrego, Stacey L; Fahrmann, Johannes; Hou, Jue; Lin, Da-Wei; Tromberg, Bruce J; Fiehn, Oliver; Kaiser, Peter Journal of lipid research 33647277 2021
Quick overview of diagnostic kits and smartphone apps for urologists during the COVID-19 pandemic: a narrative review. Park, Hyusim; Jin, Peng; Jung, Sungyong; Kim, Jayoung Translational andrology and urology 33718094 2021 Feb
Genetic deficiency or pharmacological inhibition of soluble epoxide hydrolase ameliorates high fat diet-induced pancreatic β-cell dysfunction and loss. Koike, Shinichiro; Hsu, Ming-Fo; Bettaieb, Ahmed; Chu, Bryan; Matsumoto, Naoki; Morisseau, Christophe; Havel, Peter J; Huising, Mark O; Hammock, Bruce D; Haj, Fawaz G Free radical biology & medicine 34038767 2021 Aug 20
Oxylipin responses to fasting and insulin infusion in a large mammalian model of fasting-induced insulin resistance, the northern elephant seal. Wright, Dana N; Katundu, Kondwani G H; Viscarra, Jose A; Crocker, Daniel E; Newman, John W; La Frano, Michael R; Ortiz, Rudy M American journal of physiology. Regulatory, integrative and comparative physiology 34346724 2021 10 01
Urobiome: An outlook on the metagenome of urological diseases. Shoemaker, Rachel; Kim, Jayoung Investigative and clinical urology 34729961 2021 11
Antigen-encapsulating host extracellular vesicles derived from Salmonella-infected cells stimulate pathogen-specific Th1-type responses in vivo. Hui, Winnie W; Emerson, Lisa E; Clapp, Beata; Sheppe, Austin E; Sharma, Jatin; Del Castillo, Johanna; Ou, Mark; Maegawa, Gustavo H B; Hoffman, Carol; Larkin Iii, Joseph; Pascual, David W; Ferraro, Mariola J PLoS pathogens 33956909 2021 May
Metabolic Changes Are Associated with Melphalan Resistance in Multiple Myeloma. Koomen, David C; Meads, Mark B; Magaletti, Dario M; Guingab-Cagmat, Joy D; Oliveira, Paula S; Fang, Bin; Liu, Min; Welsh, Eric A; Meke, Laurel E; Jiang, Zhijie; Hampton, Oliver A; Tungesvik, Alexandre; De Avila, Gabriel; Alugubelli, Raghunandan Reddy; Nishihori, Taiga; Silva, Ariosto S; Eschrich, Steven A; Garrett, Timothy J; Koomen, John M; Shain, Kenneth H Journal of proteome research 34014671 2021 06 04
Circulating Extracellular Vesicles Carrying Sphingolipid Cargo for the Diagnosis and Dynamic Risk Profiling of Alcoholic Hepatitis. Sehrawat, Tejasav S; Arab, Juan P; Liu, Mengfei; Amrollahi, Pouya; Wan, Meihua; Fan, Jia; Nakao, Yasuhiko; Pose, Elisa; Navarro-Corcuera, Amaia; Dasgupta, Debanjali; Liao, Chieh-Yu; He, Li; Mauer, Amy S; Avitabile, Emma; Ventura-Cots, Meritxell; Bataller, Ramon A; Sanyal, Arun J; Chalasani, Naga P; Heimbach, Julie K; Watt, Kymberly D; Gores, Gregory J; Gines, Pere; Kamath, Patrick S; Simonetto, Douglas A; Hu, Tony Y; Shah, Vijay H; Malhi, Harmeet Hepatology (Baltimore, Md.) 32246544 2021 Feb
Higher unacylated ghrelin and insulin sensitivity following dietary restriction and weight loss in obese humans. Barazzoni, Rocco; Gortan Cappellari, Gianluca; Zanetti, Michela; Klaus, Katherine A; Semolic, Annamaria; Johnson, Matthew L; Nair, K Sreekumaran Clinical nutrition (Edinburgh, Scotland) 32641220 2021 02
Stearoyl-CoA Desaturase-Mediated Monounsaturated Fatty Acid Availability Supports Humoral Immunity. Zhou, Xian; Zhu, Xingxing; Li, Chaofan; Li, Yanfeng; Ye, Zhenqing; Shapiro, Virginia Smith; Copland 3rd, John A; Hitosugi, Taro; Bernlohr, David A; Sun, Jie; Zeng, Hu Cell reports 33406440 2021 01 05
Untargeted metabolomics in primary murine bone marrow stromal cells reveals distinct profile throughout osteoblast differentiation. Misra, Biswapriya B; Jayapalan, Shobana; Richards, Alison K; Helderman, Ron C M; Rendina-Ruedy, Elizabeth Metabolomics : Official journal of the Metabolomic Society 34537901 2021 09 18
Distribution of phytochelatins, metal-binding compounds, in plant foods: A survey of commonly consumed fruits, vegetables, grains and legumes. Dennis, Kristine K; Liu, Ken H; Uppal, Karan; Go, Young-Mi; Jones, Dean P Food chemistry 32950899 2021 Mar 01
Large scale enzyme based xenobiotic identification for exposomics. Liu, Ken H; Lee, Choon M; Singer, Grant; Bais, Preeti; Castellanos, Francisco; Woodworth, Michael H; Ziegler, Thomas R; Kraft, Colleen S; Miller, Gary W; Li, Shuzhao; Go, Young-Mi; Morgan, Edward T; Jones, Dean P Nature communications 34521839 2021 Sep 14
metabCombiner: Paired Untargeted LC-HRMS Metabolomics Feature Matching and Concatenation of Disparately Acquired Data Sets. Habra, Hani; Kachman, Maureen; Bullock, Kevin; Clish, Clary; Evans, Charles R; Karnovsky, Alla Analytical chemistry 33724799 2021 Mar 30
Combinatorial Assembly of Modular Glucosides via Carboxylesterases Regulates C. elegans Starvation Survival. Wrobel, Chester J J; Yu, Jingfang; Rodrigues, Pedro R; Ludewig, Andreas H; Curtis, Brian J; Cohen, Sarah M; Fox, Bennett W; O'Donnell, Michael P; Sternberg, Paul W; Schroeder, Frank C Journal of the American Chemical Society 34460264 2021 09 15
Exploring the Impacts of Conformer Selection Methods on Ion Mobility Collision Cross Section Predictions. Nielson, Felicity F; Colby, Sean M; Thomas, Dennis G; Renslow, Ryan S; Metz, Thomas O Analytical chemistry 33606495 2021 03 02
Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra. Dührkop, Kai; Nothias, Louis-Félix; Fleischauer, Markus; Reher, Raphael; Ludwig, Marcus; Hoffmann, Martin A; Petras, Daniel; Gerwick, William H; Rousu, Juho; Dorrestein, Pieter C; Böcker, Sebastian Nature biotechnology 33230292 2021 04
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment. Schmid, Robin; Petras, Daniel; Nothias, Louis-Félix; Wang, Mingxun; Aron, Allegra T; Jagels, Annika; Tsugawa, Hiroshi; Rainer, Johannes; Garcia-Aloy, Mar; Dührkop, Kai; Korf, Ansgar; Pluskal, Tomáš; Kameník, Zdeněk; Jarmusch, Alan K; Caraballo-Rodríguez, Andrés Mauricio; Weldon, Kelly C; Nothias-Esposito, Melissa; Aksenov, Alexander A; Bauermeister, Anelize; Albarracin Orio, Andrea; Grundmann, Carlismari O; Vargas, Fernando; Koester, Irina; Gauglitz, Julia M; Gentry, Emily C; Hövelmann, Yannick; Kalinina, Svetlana A; Pendergraft, Matthew A; Panitchpakdi, Morgan; Tehan, Richard; Le Gouellec, Audrey; Aleti, Gajender; Mannochio Russo, Helena; Arndt, Birgit; Hübner, Florian; Hayen, Heiko; Zhi, Hui; Raffatellu, Manuela; Prather, Kimberly A; Aluwihare, Lihini I; Böcker, Sebastian; McPhail, Kerry L; Humpf, Hans-Ulrich; Karst, Uwe; Dorrestein, Pieter C Nature communications 34158495 2021 06 22
Targeting unique biological signals on the fly to improve MS/MS coverage and identification efficiency in metabolomics. Cho, Kevin; Schwaiger-Haber, Michaela; Naser, Fuad J; Stancliffe, Ethan; Sindelar, Miriam; Patti, Gary J Analytica chimica acta 33551064 2021 Mar 08
PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes. Carpenter, Charlie M; Zhang, Weiming; Gillenwater, Lucas; Severn, Cameron; Ghosh, Tusharkanti; Bowler, Russell; Kechris, Katerina; Ghosh, Debashis PLoS computational biology 34679079 2021 Oct
Metabolomics activity screening of T cell-induced colitis reveals anti-inflammatory metabolites. Montenegro-Burke, J Rafael; Kok, Bernard P; Guijas, Carlos; Domingo-Almenara, Xavier; Moon, Clara; Galmozzi, Andrea; Kitamura, Seiya; Eckmann, Lars; Saez, Enrique; Siuzdak, Gary E; Wolan, Dennis W Science signaling 34582249 2021 Sep 28
Temporal changes in metabolism late in seed development affect biomass composition. Kambhampati, Shrikaar; Aznar-Moreno, Jose A; Bailey, Sally R; Arp, Jennifer J; Chu, Kevin L; Bilyeu, Kristin D; Durrett, Timothy P; Allen, Doug K Plant physiology 33693938 2021 06 11
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Multiomics analysis of the mdx/mTR mouse model of Duchenne muscular dystrophy. Van Pelt, Douglas W; Kharaz, Yalda A; Sarver, Dylan C; Eckhardt, Logan R; Dzierzawski, Justin T; Disser, Nathaniel P; Piacentini, Alex N; Comerford, Eithne; McDonagh, Brian; Mendias, Christopher L Connective tissue research 32664808 2021 01
Medium-Chain Acyl-CoA Dehydrogenase Protects Mitochondria from Lipid Peroxidation in Glioblastoma. Puca, Francesca; Yu, Fei; Bartolacci, Caterina; Pettazzoni, Piergiorgio; Carugo, Alessandro; Huang-Hobbs, Emmet; Liu, Jintan; Zanca, Ciro; Carbone, Federica; Del Poggetto, Edoardo; Gumin, Joy; Dasgupta, Pushan; Seth, Sahil; Srinivasan, Sanjana; Lang, Frederick F; Sulman, Erik P; Lorenzi, Philip L; Tan, Lin; Shan, Mengrou; Tolstyka, Zachary P; Kachman, Maureen; Zhang, Li; Gao, Sisi; Deem, Angela K; Genovese, Giannicola; Scaglioni, Pier Paolo; Lyssiotis, Costas A; Viale, Andrea; Draetta, Giulio F Cancer discovery 34039636 2021 11
Metabolomics reveals biomarkers of opioid use disorder. Ghanbari, Reza; Li, Yuanyuan; Pathmasiri, Wimal; McRitchie, Susan; Etemadi, Arash; Pollock, Jonathan D; Poustchi, Hossein; Rahimi-Movaghar, Afarin; Amin-Esmaeili, Masoumeh; Roshandel, Gholamreza; Shayanrad, Amaneh; Abaei, Behrouz; Malekzadeh, Reza; Sumner, Susan C J Translational psychiatry 33542199 2021 Feb 04
Association of Cesarean Delivery and Formula Supplementation with the Stool Metabolome of 6-Week-Old Infants. Hoen, Anne G; Coker, Modupe O; Madan, Juliette C; Pathmasiri, Wimal; McRitchie, Susan; Dade, Erika F; Doherty, Brett T; Sumner, Susan; Karagas, Margaret R Metabolites 34677417 2021 Oct 13
Obesity-Dependent Adipokine Chemerin Suppresses Fatty Acid Oxidation to Confer Ferroptosis Resistance. Tan, Sze Kiat; Mahmud, Iqbal; Fontanesi, Flavia; Puchowicz, Michelle; Neumann, Chase K A; Griswold, Anthony J; Patel, Rutulkumar; Dispagna, Marco; Ahmed, Hamzah H; Gonzalgo, Mark L; Brown, J Mark; Garrett, Timothy J; Welford, Scott M Cancer discovery 33757970 2021 08
An Ion Chromatography-Ultrahigh-Resolution-MS1/Data-Independent High-Resolution MS2 Method for Stable Isotope-Resolved Metabolomics Reconstruction of Central Metabolic Networks. Sun, Qiushi; Fan, Teresa W-M; Lane, Andrew N; Higashi, Richard M Analytical chemistry 33482055 2021 02 09
Blockade of 6-phosphogluconate dehydrogenase generates CD8+ effector T cells with enhanced anti-tumor function. Daneshmandi, Saeed; Cassel, Teresa; Lin, Penghui; Higashi, Richard M; Wulf, Gerburg M; Boussiotis, Vassiliki A; Fan, Teresa W-M; Seth, Pankaj Cell reports 33691103 2021 03 09
A size-exclusion-based approach for purifying extracellular vesicles from human plasma. Vanderboom, Patrick M; Dasari, Surendra; Ruegsegger, Gregory N; Pataky, Mark W; Lucien, Fabrice; Heppelmann, Carrie Jo; Lanza, Ian R; Nair, K Sreekumaran Cell reports methods 34355211 2021 Jul 26
Atg32-dependent mitophagy sustains spermidine and nitric oxide required for heat-stress tolerance in Saccharomycescerevisiae. Kaur, Jasvinder; Goldsmith, Juliet; Tankka, Alexandra; Bustamante Eguiguren, Sofía; Gimenez, Alfredo A; Vick, Lance; Debnath, Jayanta; Vlahakis, Ariadne Journal of cell science 34096604 2021 06 01
Metabolome-wide association study of flavorant vanillin exposure in bronchial epithelial cells reveals disease-related perturbations in metabolism. Smith, Matthew Ryan; Jarrell, Zachery R; Orr, Michael; Liu, Ken H; Go, Young-Mi; Jones, Dean P Environment international 33360165 2021 02
Utilizing a Biology-Driven Approach to Map the Exposome in Health and Disease: An Essential Investment to Drive the Next Generation of Environmental Discovery. Chung, Ming Kei; Rappaport, Stephen M; Wheelock, Craig E; Nguyen, Vy Kim; van der Meer, Thomas P; Miller, Gary W; Vermeulen, Roel; Patel, Chirag J Environmental health perspectives 34435882 2021 Aug
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AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry-mass spectrometry. Lee, Joon-Yong; Bilbao, Aivett; Conant, Christopher R; Bloodsworth, Kent J; Orton, Daniel J; Zhou, Mowei; Wilson, Jesse W; Zheng, Xueyun; Webb, Ian K; Li, Ailin; Hixson, Kim K; Fjeldsted, John C; Ibrahim, Yehia M; Payne, Samuel H; Jansson, Christer; Smith, Richard D; Metz, Thomas O Bioinformatics (Oxford, England) 34145874 2021 Nov 18
CFM-ID 4.0: More Accurate ESI-MS/MS Spectral Prediction and Compound Identification. Wang, Fei; Liigand, Jaanus; Tian, Siyang; Arndt, David; Greiner, Russell; Wishart, David S Analytical chemistry 34403256 2021 08 31
Proteomic profiling reveals biomarkers and pathways in type 2 diabetes risk. Ngo, Debby; Benson, Mark D; Long, Jonathan Z; Chen, Zsu-Zsu; Wang, Ruiqi; Nath, Anjali K; Keyes, Michelle J; Shen, Dongxiao; Sinha, Sumita; Kuhn, Eric; Morningstar, Jordan E; Shi, Xu; Peterson, Bennet D; Chan, Christopher; Katz, Daniel H; Tahir, Usman A; Farrell, Laurie A; Melander, Olle; Mosley, Jonathan D; Carr, Steven A; Vasan, Ramachandran S; Larson, Martin G; Smith, J Gustav; Wang, Thomas J; Yang, Qiong; Gerszten, Robert E JCI insight 33591955 2021 03 08
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree. Tripathi, Anupriya; Vázquez-Baeza, Yoshiki; Gauglitz, Julia M; Wang, Mingxun; Dührkop, Kai; Nothias-Esposito, Mélissa; Acharya, Deepa D; Ernst, Madeleine; van der Hooft, Justin J J; Zhu, Qiyun; McDonald, Daniel; Brejnrod, Asker D; Gonzalez, Antonio; Handelsman, Jo; Fleischauer, Markus; Ludwig, Marcus; Böcker, Sebastian; Nothias, Louis-Félix; Knight, Rob; Dorrestein, Pieter C Nature chemical biology 33199911 2021 Feb
Genetic architecture of root and shoot ionomes in rice (Oryza sativa L.). Cobb, Joshua N; Chen, Chen; Shi, Yuxin; Maron, Lyza G; Liu, Danni; Rutzke, Mike; Greenberg, Anthony; Craft, Eric; Shaff, Jon; Paul, Edyth; Akther, Kazi; Wang, Shaokui; Kochian, Leon V; Zhang, Dabao; Zhang, Min; McCouch, Susan R TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 34018019 2021 Aug
Accelerating strain phenotyping with desorption electrospray ionization-imaging mass spectrometry and untargeted analysis of intact microbial colonies. Ellis, Berkley M; Babele, Piyoosh K; May, Jody C; Johnson, Carl H; Pfleger, Brian F; Young, Jamey D; McLean, John A Proceedings of the National Academy of Sciences of the United States of America 34857637 2021 Dec 07
NMR Analysis of Carboxylate Isotopomers of 13C-Metabolites by Chemoselective Derivatization with 15N-Cholamine. Vicente-Muñoz, Sara; Lin, Penghui; Fan, Teresa W-M; Lane, Andrew N Analytical chemistry 33880916 2021 05 04
The association of in utero tobacco smoke exposure, quantified by serum cotinine, and Autism Spectrum Disorder. Berger, Kimberly; Pearl, Michelle; Kharrazi, Marty; Li, Ying; DeGuzman, Josephine; She, Jianwen; Behniwal, Paramjit; Lyall, Kristen; Windham, Gayle Autism research : official journal of the International Society for Autism Research 34165248 2021 09
Untargeted proteomics reveals upregulation of stress response pathways during CHO-based monoclonal antibody manufacturing process leading to disulfide bond reduction. Park, Seo-Young; Egan, Susan; Cura, Anthony J; Aron, Kathryn L; Xu, Xuankuo; Zheng, Mengyuan; Borys, Michael; Ghose, Sanchayita; Li, Zhengjian; Lee, Kyongbum mAbs 34424810 2021 Jan-Dec
From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem. Khadempour, Lily; Kyle, Jennifer E; Webb-Robertson, Bobbie-Jo M; Nicora, Carrie D; Smith, Francesca B; Smith, Richard D; Lipton, Mary S; Currie, Cameron R; Baker, Erin S; Burnum-Johnson, Kristin E mSystems 33758033 2021 Mar 23
Isotope tracing in adult zebrafish reveals alanine cycling between melanoma and liver. Naser, Fuad J; Jackstadt, Madelyn M; Fowle-Grider, Ronald; Spalding, Jonathan L; Cho, Kevin; Stancliffe, Ethan; Doonan, Steven R; Kramer, Eva T; Yao, Lijun; Krasnick, Bradley; Ding, Li; Fields, Ryan C; Kaufman, Charles K; Shriver, Leah P; Johnson, Stephen L; Patti, Gary J Cell metabolism 33989520 2021 07 06
DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution. Stancliffe, Ethan; Schwaiger-Haber, Michaela; Sindelar, Miriam; Patti, Gary J Nature methods 34239103 2021 Jul
A Mediation Approach to Discovering Causal Relationships between the Metabolome and DNA Methylation in Type 1 Diabetes. Vigers, Tim; Vanderlinden, Lauren A; Johnson, Randi K; Carry, Patrick M; Yang, Ivana; DeFelice, Brian C; Kaizer, Alexander M; Pyle, Laura; Rewers, Marian; Fiehn, Oliver; Norris, Jill M; Kechris, Katerina Metabolites 34436483 2021 Aug 14
Cognitive analysis of metabolomics data for systems biology. Majumder, Erica L-W; Billings, Elizabeth M; Benton, H Paul; Martin, Richard L; Palermo, Amelia; Guijas, Carlos; Rinschen, Markus M; Domingo-Almenara, Xavier; Montenegro-Burke, J Rafael; Tagtow, Bradley A; Plumb, Robert S; Siuzdak, Gary Nature protocols 33483720 2021 Mar
Temporal mechanisms of myogenic specification in human induced pluripotent stem cells. Nayak, P; Colas, A; Mercola, M; Varghese, S; Subramaniam, S Science advances 33731358 2021 03
HIF-2α activation potentiates oxidative cell death in colorectal cancers by increasing cellular iron. Singhal, Rashi; Mitta, Sreedhar R; Das, Nupur K; Kerk, Samuel A; Sajjakulnukit, Peter; Solanki, Sumeet; Andren, Anthony; Kumar, Roshan; Olive, Kenneth P; Banerjee, Ruma; Lyssiotis, Costas A; Shah, Yatrik M The Journal of clinical investigation 33914705 2021 06 15
Gestational long-term hypoxia induces metabolomic reprogramming and phenotypic transformations in fetal sheep pulmonary arteries. Leslie, Eric; Lopez, Vanessa; Anti, Nana A O; Alvarez, Rafael; Kafeero, Isaac; Welsh, Donald G; Romero, Monica; Kaushal, Shawn; Johnson, Catherine M; Bosviel, Remy; Blaženović, Ivana; Song, Rui; Brito, Alex; Frano, Michael R La; Zhang, Lubo; Newman, John W; Fiehn, Oliver; Wilson, Sean M American journal of physiology. Lung cellular and molecular physiology 33624555 2021 05 01
Effects of inflammation and soluble epoxide hydrolase inhibition on oxylipin composition of very low-density lipoproteins in isolated perfused rat livers. Walker, Rachel E; Savinova, Olga V; Pedersen, Theresa L; Newman, John W; Shearer, Gregory C Physiological reports 33625776 2021 02
Hexosamine biosynthetic pathway and O-GlcNAc-processing enzymes regulate daily rhythms in protein O-GlcNAcylation. Liu, Xianhui; Blaženović, Ivana; Contreras, Adam J; Pham, Thu M; Tabuloc, Christine A; Li, Ying H; Ji, Jian; Fiehn, Oliver; Chiu, Joanna C Nature communications 34234137 2021 Jul 07
Serum metabolomic biomarkers of perceptual speed in cognitively normal and mildly impaired subjects with fasting state stratification. Borkowski, Kamil; Taha, Ameer Y; Pedersen, Theresa L; De Jager, Philip L; Bennett, David A; Arnold, Matthias; Kaddurah-Daouk, Rima; Newman, John W Scientific reports 34556796 2021 09 23
Untargeted analysis of first trimester serum to reveal biomarkers of pregnancy complications: a case-control discovery phase study. Harville, E W; Li, Y-Y; Pan, K; McRitchie, S; Pathmasiri, W; Sumner, S Scientific reports 33568690 2021 02 10
Insulin resistance is mechanistically linked to hepatic mitochondrial remodeling in non-alcoholic fatty liver disease. Shannon, Chris E; Ragavan, Mukundan; Palavicini, Juan Pablo; Fourcaudot, Marcel; Bakewell, Terry M; Valdez, Ivan A; Ayala, Iriscilla; Jin, Eunsook S; Madesh, Muniswamy; Han, Xianlin; Merritt, Matthew E; Norton, Luke Molecular metabolism 33359401 2021 03
Intraspecific variation in polar and nonpolar metabolite profiles of a threatened Caribbean coral. Henry, Joseph A; Khattri, Ram B; Guingab-Cagmat, Joy; Merritt, Matthew E; Garrett, Timothy J; Patterson, Joshua T; Lohr, Kathryn E Metabolomics : Official journal of the Metabolomic Society 34143280 2021 06 18
Serine synthesis influences tamoxifen response in ER+ human breast carcinoma. Metcalf, Stephanie; Petri, Belinda J; Kruer, Traci; Green, Benjamin; Dougherty, Susan; Wittliff, James L; Klinge, Carolyn M; Clem, Brian F Endocrine-related cancer 33112838 2021 01
6-Phosphogluconate dehydrogenase (6PGD), a key checkpoint in reprogramming of regulatory T cells metabolism and function. Daneshmandi, Saeed; Cassel, Teresa; Higashi, Richard M; Fan, Teresa W-M; Seth, Pankaj eLife 34709178 2021 10 28
Lipidomics dataset of PTEN deletion-induced optic nerve regeneration mouse model. Arcuri, Jennifer; Hegarty, Shane; He, Zhigang; Bhattacharya, Sanjoy K Data in brief 33457476 2021 Feb
Torsin and NEP1R1-CTDNEP1 phosphatase affect interphase nuclear pore complex insertion by lipid-dependent and lipid-independent mechanisms. Jacquemyn, Julie; Foroozandeh, Joyce; Vints, Katlijn; Swerts, Jef; Verstreken, Patrik; Gounko, Natalia V; Gallego, Sandra F; Goodchild, Rose The EMBO journal 34313336 2021 09 01
Application of Carbon-13 Isotopomer Analysis to Assess Perinatal Myocardial Glucose Metabolism in Sheep. Ragavan, Mukundan; Li, Mengchen; Giacalone, Anthony G; Wood, Charles E; Keller-Wood, Maureen; Merritt, Matthew E Metabolites 33466367 2021 Jan 05
Comprehensive metabolomic study of the response of HK-2 cells to hyperglycemic hypoxic diabetic-like milieu. Valdés, Alberto; Lucio-Cazaña, Francisco J; Castro-Puyana, María; García-Pastor, Coral; Fiehn, Oliver; Marina, María Luisa Scientific reports 33658594 2021 Mar 03
Plasma lipidomics profile in pregnancy and gestational diabetes risk: a prospective study in a multiracial/ethnic cohort. Rahman, Mohammad L; Feng, Yen-Chen A; Fiehn, Oliver; Albert, Paul S; Tsai, Michael Y; Zhu, Yeyi; Wang, Xiaobin; Tekola-Ayele, Fasil; Liang, Liming; Zhang, Cuilin BMJ open diabetes research & care 33674279 2021 03
Leucoselect Phytosome Modulates Serum Eicosapentaenoic Acid, Docosahexaenoic Acid, and Prostaglandin E3 in a Phase I Lung Cancer Chemoprevention Study. Mao, Jenny T; Xue, Bingye; Fan, Sili; Neis, Patricia; Qualls, Clifford; Massie, Larry; Fiehn, Oliver Cancer prevention research (Philadelphia, Pa.) 33707173 2021 06
Metabolomics of Lung Microdissections Reveals Region- and Sex-Specific Metabolic Effects of Acute Naphthalene Exposure in Mice. Stevens, Nathanial C; Edwards, Patricia C; Tran, Lisa M; Ding, Xinxin; Van Winkle, Laura S; Fiehn, Oliver Toxicological sciences : an official journal of the Society of Toxicology 34498071 2021 Nov 24
Microbial metabolite delta-valerobetaine is a diet-dependent obesogen. Liu, Ken H; Owens, Joshua A; Saeedi, Bejan; Cohen, Catherine E; Bellissimo, Moriah P; Naudin, Crystal; Darby, Trevor; Druzak, Samuel; Maner-Smith, Kristal; Orr, Michael; Hu, Xin; Fernandes, Jolyn; Camacho, Mary Catherine; Hunter-Chang, Sarah; VanInsberghe, David; Ma, Chunyu; Ganesh, Thota; Yeligar, Samantha M; Uppal, Karan; Go, Young-Mi; Alvarez, Jessica A; Vos, Miriam B; Ziegler, Thomas R; Woodworth, Michael H; Kraft, Colleen S; Jones, Rheinallt M; Ortlund, Eric; Neish, Andrew S; Jones, Dean P Nature metabolism 34931082 2021 Dec
Modifying Chromatography Conditions for Improved Unknown Feature Identification in Untargeted Metabolomics. Anderson, Brady G; Raskind, Alexander; Habra, Hani; Kennedy, Robert T; Evans, Charles R Analytical chemistry 34794310 2021 12 07
Triboelectric Nanogenerator Ion Mobility-Mass Spectrometry for In-Depth Lipid Annotation. Bouza, Marcos; Li, Yafeng; Wang, Aurelia C; Wang, Zhong Lin; Fernández, Facundo M Analytical chemistry 33720699 2021 04 06
Comparison of High-Resolution Fourier Transform Mass Spectrometry Platforms for Putative Metabolite Annotation. Huang, Danning; Bouza, Marcos; Gaul, David A; Leach 3rd, Franklin E; Amster, I Jonathan; Schroeder, Frank C; Edison, Arthur S; Fernández, Facundo M Analytical chemistry 34460220 2021 09 14
Heparanase expression and activity are increased in platelets during clinical sepsis. Eustes, Alicia S; Campbell, Robert A; Middleton, Elizabeth A; Tolley, Neal D; Manne, Bhanu K; Montenont, Emilie; Rowley, Jesse W; Krauel, Krystin; Blair, Antoinette; Guo, Li; Kosaka, Yasuhiro; Medeiros-de-Moraes, Isabel M; Lacerda, Marcus; Hottz, Eugenio D; Neto, Hugo Castro Faria; Zimmerman, Guy A; Weyrich, Andrew S; Petrey, Aaron; Rondina, Matthew T Journal of thrombosis and haemostasis : JTH 33587773 2021 05
Untargeted Metabolome- and Transcriptome-Wide Association Study Suggests Causal Genes Modulating Metabolite Concentrations in Urine. Sönmez Flitman, Reyhan; Khalili, Bita; Kutalik, Zoltan; Rueedi, Rico; Brümmer, Anneke; Bergmann, Sven Journal of proteome research 34699229 2021 11 05
Multidimensional Separations of Intact Phase II Steroid Metabolites Utilizing LC-Ion Mobility-HRMS. Davis Jr, Don E; Leaptrot, Katrina L; Koomen, David C; May, Jody C; Cavalcanti, Gustavo de A; Padilha, Monica C; Pereira, Henrique M G; McLean, John A Analytical chemistry 34319704 2021 08 10
Deletion of Glut1 in early postnatal cartilage reprograms chondrocytes toward enhanced glutamine oxidation. Wang, Cuicui; Ying, Jun; Niu, Xiangfeng; Li, Xiaofei; Patti, Gary J; Shen, Jie; O'Keefe, Regis J Bone research 34426569 2021 Aug 23
Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos. Romsdahl, Trevor B; Kambhampati, Shrikaar; Koley, Somnath; Yadav, Umesh P; Alonso, Ana Paula; Allen, Doug K; Chapman, Kent D Metabolites 33806402 2021 Mar 04
Early life stress exposure associated with reduced polyunsaturated-containing lipids in low-income children. LaBarre, Jennifer L; Miller, Alison L; Bauer, Katherine W; Burant, Charles F; Lumeng, Julie C Pediatric research 32492693 2021 04
Advantages of Studying the Metabolome in Response to Mixed-Macronutrient Challenges and Suggestions for Future Research Designs. LaBarre, Jennifer L; Singer, Kanakadurga; Burant, Charles F The Journal of nutrition 34255076 2021 Oct 01
Exogenous GLP-1 stimulates TCA cycle and suppresses gluconeogenesis and ketogenesis in late-fasted northern elephant seals pups. Dhillon, Jaapna; Viscarra, Jose A; Newman, John W; Fiehn, Oliver; Crocker, Daniel E; Ortiz, Rudy M American journal of physiology. Regulatory, integrative and comparative physiology 33407018 2021 04 01
Ethnicity-specific alterations of plasma and hepatic lipidomic profiles are related to high NAFLD rate and severity in Hispanic Americans, a pilot study. Mazi, Tagreed A; Borkowski, Kamil; Newman, John W; Fiehn, Oliver; Bowlus, Christopher L; Sarkar, Souvik; Matsukuma, Karen; Ali, Mohamed R; Kieffer, Dorothy A; Wan, Yu-Jui Y; Stanhope, Kimber L; Havel, Peter J; Medici, Valentina Free radical biology & medicine 34182070 2021 08 20
Stress-Induced Accumulation of HnRNP K into Stress Granules. Kim, Jayoung; Yeon, Austin; Kim, Woong-Ki; Kim, Khae-Hawn; Ohn, Takbum Journal of cancer science and clinical therapeutics 35340804 2021
The role of gut microbial community and metabolomic shifts in adaptive resistance of Atlantic killifish (Fundulus heteroclitus) to polycyclic aromatic hydrocarbons. Redfern, Lauren K; Jayasundara, Nishad; Singleton, David R; Di Giulio, Richard T; Carlson, James; Sumner, Susan J; Gunsch, Claudia K The Science of the total environment 33647645 2021 Jul 01
Mass Spectrometry-Based Cellular Metabolomics: Current Approaches, Applications, and Future Directions. Domenick, Taylor M; Gill, Emily L; Vedam-Mai, Vinata; Yost, Richard A Analytical chemistry 33146525 2021 01 12
Multiomic Predictors of Short-Term Weight Loss and Clinical Outcomes During a Behavioral-Based Weight Loss Intervention. Siebert, Janet C; Stanislawski, Maggie A; Zaman, Adnin; Ostendorf, Danielle M; Konigsberg, Iain R; Jambal, Purevsuren; Ir, Diana; Bing, Kristen; Wayland, Liza; Scorsone, Jared J; Lozupone, Catherine A; Görg, Carsten; Frank, Daniel N; Bessesen, Daniel; MacLean, Paul S; Melanson, Edward L; Catenacci, Victoria A; Borengasser, Sarah J Obesity (Silver Spring, Md.) 33811477 2021 05
Circulating extracellular vesicles are a biomarker for NAFLD resolution and response to weight loss surgery. Nakao, Yasuhiko; Amrollahi, Pouya; Parthasarathy, Gopanandan; Mauer, Amy S; Sehrawat, Tejasav S; Vanderboom, Patrick; Nair, K Sreekumaran; Nakao, Kazuhiko; Allen, Alina M; Hu, Tony Y; Malhi, Harmeet Nanomedicine : nanotechnology, biology, and medicine 34174416 2021 08
Porphyromonas somerae Invasion of Endometrial Cancer Cells. Crooks, Taylor A; Madison, Joseph D; Walsh, Dana M; Herbert, William G; Jeraldo, Patricio R; Chia, Nicholas; Cliby, William A; Kaufmann, Scott H; Walther-Antonio, Marina R S Frontiers in microbiology 34367083 2021
SARS-CoV-2 infection rewires host cell metabolism and is potentially susceptible to mTORC1 inhibition. Mullen, Peter J; Garcia Jr, Gustavo; Purkayastha, Arunima; Matulionis, Nedas; Schmid, Ernst W; Momcilovic, Milica; Sen, Chandani; Langerman, Justin; Ramaiah, Arunachalam; Shackelford, David B; Damoiseaux, Robert; French, Samuel W; Plath, Kathrin; Gomperts, Brigitte N; Arumugaswami, Vaithilingaraja; Christofk, Heather R Nature communications 33767183 2021 03 25
Oxylipin biosynthesis reinforces cellular senescence and allows detection of senolysis. Wiley, Christopher D; Sharma, Rishi; Davis, Sonnet S; Lopez-Dominguez, Jose Alberto; Mitchell, Kylie P; Wiley, Samantha; Alimirah, Fatouma; Kim, Dong Eun; Payne, Therese; Rosko, Andrew; Aimontche, Eliezer; Deshpande, Sharvari M; Neri, Francesco; Kuehnemann, Chisaka; Demaria, Marco; Ramanathan, Arvind; Campisi, Judith Cell metabolism 33811820 2021 06 01
Long-Term Metabolomics Reference Material. Gouveia, Goncalo J; Shaver, Amanda O; Garcia, Brianna M; Morse, Alison M; Andersen, Erik C; Edison, Arthur S; McIntyre, Lauren M Analytical chemistry 34156835 2021 07 06
Serum lipids are associated with nonalcoholic fatty liver disease: a pilot case-control study in Mexico. Flores, Yvonne N; Amoon, Aryana T; Su, Baolong; Velazquez-Cruz, Rafael; Ramírez-Palacios, Paula; Salmerón, Jorge; Rivera-Paredez, Berenice; Sinsheimer, Janet S; Lusis, Aldons J; Huertas-Vazquez, Adriana; Saab, Sammy; Glenn, Beth A; May, Folasade P; Williams, Kevin J; Bastani, Roshan; Bensinger, Steven J Lipids in health and disease 34629052 2021 Oct 10
A standardized gnotobiotic mouse model harboring a minimal 15-member mouse gut microbiota recapitulates SOPF/SPF phenotypes. Darnaud, Marion; De Vadder, Filipe; Bogeat, Pascaline; Boucinha, Lilia; Bulteau, Anne-Laure; Bunescu, Andrei; Couturier, Céline; Delgado, Ana; Dugua, Hélène; Elie, Céline; Mathieu, Alban; Novotná, Tereza; Ouattara, Djomangan Adama; Planel, Séverine; Saliou, Adrien; Šrůtková, Dagmar; Yansouni, Jennifer; Stecher, Bärbel; Schwarzer, Martin; Leulier, François; Tamellini, Andrea Nature communications 34795236 2021 Nov 18
Deuterated water imaging of the rat brain following metabolism of [2 H7 ]glucose. Mahar, Rohit; Zeng, Huadong; Giacalone, Anthony; Ragavan, Mukundan; Mareci, Thomas H; Merritt, Matthew E Magnetic resonance in medicine 33576535 2021 06
Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Flight, and Quadrupole Mass Spectrometry. Zhang, Ying; Gao, Bei; Valdiviez, Luis; Zhu, Chao; Gallagher, Tara; Whiteson, Katrine; Fiehn, Oliver Analytical chemistry 33434014 2021 02 02
Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification. Li, Yuanyue; Kind, Tobias; Folz, Jacob; Vaniya, Arpana; Mehta, Sajjan Singh; Fiehn, Oliver Nature methods 34857935 2021 Dec
Environmental chemicals and metabolic disruption in primary and secondary human parathyroid tumors. Hu, Xin; Saunders, Neil; Safley, Susan; Smith, Matthew Ryan; Liang, Yongliang; Tran, ViLinh; Sharma, Joe; Jones, Dean P; Weber, Collin J Surgery 32771296 2021 01
Cruciferous vegetables (Brassica oleracea) confer cytoprotective effects in Drosophila intestines. Lyles, James T; Luo, Liping; Liu, Ken; Jones, Dean P; Jones, Rheinallt M; Quave, Cassandra L Gut microbes 33966605 2021 Jan-Dec
NMR: Unique Strengths That Enhance Modern Metabolomics Research. Edison, Arthur S; Colonna, Maxwell; Gouveia, Goncalo J; Holderman, Nicole R; Judge, Michael T; Shen, Xunan; Zhang, Sicong Analytical chemistry 33180470 2021 Jan 12
AutoGraph: Autonomous Graph-Based Clustering of Small-Molecule Conformations. Tanemura, Kiyoto Aramis; Das, Susanta; Merz Jr, Kenneth M Journal of chemical information and modeling 33780248 2021 04 26
Culture and Assay of Large-Scale Mixed-Stage Caenorhabditis elegans Populations. Shaver, Amanda O; Gouveia, Goncalo J; Kirby, Pamela S; Andersen, Erik C; Edison, Arthur S Journal of visualized experiments : JoVE 34028439 2021 05 05
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Dose-Response Metabolomics To Understand Biochemical Mechanisms and Off-Target Drug Effects with the TOXcms Software. Yao, Cong-Hui; Wang, Lingjue; Stancliffe, Ethan; Sindelar, Miriam; Cho, Kevin; Yin, Weitong; Wang, Yahui; Patti, Gary J Analytical chemistry 31804057 2020 01 21
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Utilizing machine learning to discern hidden clinical values from big data in urology. Kim, Wun-Jae; Jin, Peng; Kim, Won Hwa; Kim, Jayoung Investigative and clinical urology 32377598 2020 05
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Impaired glucose partitioning in primary myotubes from severely obese women with type 2 diabetes. Zou, Kai; Turner, Kristen; Zheng, Donghai; Hinkley, J Matthew; Kugler, Benjamin A; Hornby, Pamela J; Lenhard, James; Jones, Terry E; Pories, Walter J; Dohm, G Lynis; Houmard, Joseph A American journal of physiology. Cell physiology 32966127 2020 12 01
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Caveolin-1-mediated sphingolipid oncometabolism underlies a metabolic vulnerability of prostate cancer. Vykoukal, Jody; Fahrmann, Johannes F; Gregg, Justin R; Tang, Zhe; Basourakos, Spyridon; Irajizad, Ehsan; Park, Sanghee; Yang, Guang; Creighton, Chad J; Fleury, Alia; Mayo, Jeffrey; Paulucci-Holthauzen, Adriana; Dennison, Jennifer B; Murage, Eunice; Peterson, Christine B; Davis, John W; Kim, Jeri; Hanash, Samir; Thompson, Timothy C Nature communications 32855410 2020 08 27
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Macronutrient, Energy, and Bile Acid Metabolism Pathways Altered Following a Physiological Meal Challenge, Relative to Fasting, among Guatemalan Adults. Yu, Elaine A; Yu, Tianwei; Jones, Dean P; Martorell, Reynaldo; Ramirez-Zea, Manuel; Stein, Aryeh D The Journal of nutrition 32597983 2020 Aug 01
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Feature-Based Molecular Networking for Metabolite Annotation. Phelan, Vanessa V Methods in molecular biology (Clifton, N.J.) 31953821 2020
Feature-based molecular networking in the GNPS analysis environment. Nothias, Louis-Félix; Petras, Daniel; Schmid, Robin; Dührkop, Kai; Rainer, Johannes; Sarvepalli, Abinesh; Protsyuk, Ivan; Ernst, Madeleine; Tsugawa, Hiroshi; Fleischauer, Markus; Aicheler, Fabian; Aksenov, Alexander A; Alka, Oliver; Allard, Pierre-Marie; Barsch, Aiko; Cachet, Xavier; Caraballo-Rodriguez, Andres Mauricio; Da Silva, Ricardo R; Dang, Tam; Garg, Neha; Gauglitz, Julia M; Gurevich, Alexey; Isaac, Giorgis; Jarmusch, Alan K; Kameník, Zdeněk; Kang, Kyo Bin; Kessler, Nikolas; Koester, Irina; Korf, Ansgar; Le Gouellec, Audrey; Ludwig, Marcus; Martin H, Christian; McCall, Laura-Isobel; McSayles, Jonathan; Meyer, Sven W; Mohimani, Hosein; Morsy, Mustafa; Moyne, Oriane; Neumann, Steffen; Neuweger, Heiko; Nguyen, Ngoc Hung; Nothias-Esposito, Melissa; Paolini, Julien; Phelan, Vanessa V; Pluskal, Tomáš; Quinn, Robert A; Rogers, Simon; Shrestha, Bindesh; Tripathi, Anupriya; van der Hooft, Justin J J; Vargas, Fernando; Weldon, Kelly C; Witting, Michael; Yang, Heejung; Zhang, Zheng; Zubeil, Florian; Kohlbacher, Oliver; Böcker, Sebastian; Alexandrov, Theodore; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C Nature methods 32839597 2020 09
Deep annotation of untargeted LC-MS metabolomics data with Binner. Kachman, Maureen; Habra, Hani; Duren, William; Wigginton, Janis; Sajjakulnukit, Peter; Michailidis, George; Burant, Charles; Karnovsky, Alla Bioinformatics (Oxford, England) 31642507 2020 03 01
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Differential Abundance Analysis with Bayes Shrinkage Estimation of Variance (DASEV) for Zero-Inflated Proteomic and Metabolomic Data. Huang, Zhengyan; Lane, Andrew N; Fan, Teresa W-M; Higashi, Richard M; Weiss, Heidi L; Yin, Xiangrong; Wang, Chi Scientific reports 31964922 2020 01 21
Using Metabolomics to Identify Cell Line-Independent Indicators of Growth Inhibition for Chinese Hamster Ovary Cell-based Bioprocesses. Alden, Nicholas; Raju, Ravali; McElearney, Kyle; Lambropoulos, James; Kshirsagar, Rashmi; Gilbert, Alan; Lee, Kyongbum Metabolites 32429145 2020 May 15
Chemical Discovery in the Era of Metabolomics. Sindelar, Miriam; Patti, Gary J Journal of the American Chemical Society 32275430 2020 05 20
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Sex-Specific Metabolite Biomarkers of NAFLD in Youth: A Prospective Study in the EPOCH Cohort. Perng, Wei; Francis, Ellen C; Smith, Harry A; Carey, John; Wang, Dongqing; Kechris, Katerina M; Dabelea, Dana The Journal of clinical endocrinology and metabolism 32687159 2020 09 01
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Exposure to inorganic arsenic and its methylated metabolites alters metabolomics profiles in INS-1 832/13 insulinoma cells and isolated pancreatic islets. Li, Yuan-Yuan; Douillet, Christelle; Huang, Madelyn; Beck, Rowan; Sumner, Susan Jenkins; Styblo, Miroslav Archives of toxicology 32277266 2020 06
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A vision for exposome epidemiology: The pregnancy exposome in relation to breast cancer in the Child Health and Development Studies. Jones, Dean P; Cohn, Barbara A Reproductive toxicology (Elmsford, N.Y.) 32197999 2020 03
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Reproducible molecular networking of untargeted mass spectrometry data using GNPS. Aron, Allegra T; Gentry, Emily C; McPhail, Kerry L; Nothias, Louis-Félix; Nothias-Esposito, Mélissa; Bouslimani, Amina; Petras, Daniel; Gauglitz, Julia M; Sikora, Nicole; Vargas, Fernando; van der Hooft, Justin J J; Ernst, Madeleine; Kang, Kyo Bin; Aceves, Christine M; Caraballo-Rodríguez, Andrés Mauricio; Koester, Irina; Weldon, Kelly C; Bertrand, Samuel; Roullier, Catherine; Sun, Kunyang; Tehan, Richard M; Boya P, Cristopher A; Christian, Martin H; Gutiérrez, Marcelino; Ulloa, Aldo Moreno; Tejeda Mora, Javier Andres; Mojica-Flores, Randy; Lakey-Beitia, Johant; Vásquez-Chaves, Victor; Zhang, Yilue; Calderón, Angela I; Tayler, Nicole; Keyzers, Robert A; Tugizimana, Fidele; Ndlovu, Nombuso; Aksenov, Alexander A; Jarmusch, Alan K; Schmid, Robin; Truman, Andrew W; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C Nature protocols 32405051 2020 06
Meconium androgens are correlated with ASD-related phenotypic traits in early childhood in a familial enriched risk cohort. Terloyeva, Dina; Frey, Alexander J; Park, Bo Y; Kauffman, Elizabeth M; Mathew, Leny; Bostwick, Anna; Varner, Erika L; Lee, Brian K; Croen, Lisa A; Fallin, Margaret D; Hertz-Picciotto, Irva; Newschaffer, Craig J; Lyall, Kristen; Snyder, Nathaniel W Molecular autism 33228808 2020 11 23
Crowd-Sourced Chemistry: Considerations for Building a Standardized Database to Improve Omic Analyses. Picache, Jaqueline A; May, Jody C; McLean, John A ACS omega 31984253 2020 Jan 21
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution. Rozenblatt-Rosen, Orit; Regev, Aviv; Oberdoerffer, Philipp; Nawy, Tal; Hupalowska, Anna; Rood, Jennifer E; Ashenberg, Orr; Cerami, Ethan; Coffey, Robert J; Demir, Emek; Ding, Li; Esplin, Edward D; Ford, James M; Goecks, Jeremy; Ghosh, Sharmistha; Gray, Joe W; Guinney, Justin; Hanlon, Sean E; Hughes, Shannon K; Hwang, E Shelley; Iacobuzio-Donahue, Christine A; Jané-Valbuena, Judit; Johnson, Bruce E; Lau, Ken S; Lively, Tracy; Mazzilli, Sarah A; Pe'er, Dana; Santagata, Sandro; Shalek, Alex K; Schapiro, Denis; Snyder, Michael P; Sorger, Peter K; Spira, Avrum E; Srivastava, Sudhir; Tan, Kai; West, Robert B; Williams, Elizabeth H; Human Tumor Atlas Network Cell 32302568 2020 Apr 16
Identifying Protein-metabolite Networks Associated with COPD Phenotypes. Mastej, Emily; Gillenwater, Lucas; Zhuang, Yonghua; Pratte, Katherine A; Bowler, Russell P; Kechris, Katerina Metabolites 32218378 2020 Mar 25
Plasma Metabolomic Signatures of Chronic Obstructive Pulmonary Disease and the Impact of Genetic Variants on Phenotype-Driven Modules. Gillenwater, Lucas A; Pratte, Katherine A; Hobbs, Brian D; Cho, Michael H; Zhuang, Yonghua; Halper-Stromberg, Eitan; Cruickshank-Quinn, Charmion; Reisdorph, Nichole; Petrache, Irina; Labaki, Wassim W; O'Neal, Wanda K; Ortega, Victor E; Jones, Dean P; Uppal, Karan; Jacobson, Sean; Michelotti, Gregory; Wendt, Christine H; Kechris, Katerina J; Bowler, Russell P Network and systems medicine 33987620 2020 Dec 01
METLIN: A Tandem Mass Spectral Library of Standards. Montenegro-Burke, J Rafael; Guijas, Carlos; Siuzdak, Gary Methods in molecular biology (Clifton, N.J.) 31953817 2020
METLIN MS2 molecular standards database: a broad chemical and biological resource. Xue, Jingchuan; Guijas, Carlos; Benton, H Paul; Warth, Benedikt; Siuzdak, Gary Nature methods 32839599 2020 10
Tracing metabolic flux through time and space with isotope labeling experiments. Allen, Doug K; Young, Jamey D Current opinion in biotechnology 31864070 2020 Aug
Inhibiting the Hexosamine Biosynthetic Pathway Lowers O-GlcNAcylation Levels and Sensitizes Cancer to Environmental Stress. Walter, Lisa A; Lin, Yu Hsuan; Halbrook, Christopher J; Chuh, Kelly N; He, Lina; Pedowitz, Nichole J; Batt, Anna R; Brennan, Caroline K; Stiles, Bangyan L; Lyssiotis, Costas A; Pratt, Matthew R Biochemistry 31625393 2020 Sep 01
A Ribose-Scavenging System Confers Colonization Fitness on the Human Gut Symbiont Bacteroides thetaiotaomicron in a Diet-Specific Manner. Glowacki, Robert W P; Pudlo, Nicholas A; Tuncil, Yunus; Luis, Ana S; Sajjakulnukit, Peter; Terekhov, Anton I; Lyssiotis, Costas A; Hamaker, Bruce R; Martens, Eric C Cell host & microbe 31901520 2020 01 08
Integrative Analysis of Gene-Specific DNA Methylation and Untargeted Metabolomics Data from the ELEMENT Cohort. Goodrich, Jaclyn M; Hector, Emily C; Tang, Lu; LaBarre, Jennifer L; Dolinoy, Dana C; Mercado-Garcia, Adriana; Cantoral, Alejandra; Song, Peter Xk; Téllez-Rojo, Martha Maria; Peterson, Karen E Epigenetics insights 33354655 2020
Proteomic profiling of bladder cancer for precision medicine in the clinical setting: A review for the busy urologist. Kim, Jayoung; Jin, Peng; Yang, Wei; Kim, Wun Jae Investigative and clinical urology 33135400 2020 11
Serum trace metal association with response to erythropoiesis stimulating agents in incident and prevalent hemodialysis patients. Brier, Michael E; Gooding, Jessica R; Harrington, James M; Burgess, Jason P; McRitchie, Susan L; Zhang, Xiaolan; Rovin, Brad H; Klein, Jon B; Himmelfarb, Jonathan; Sumner, Susan J; Merchant, Michael L Scientific reports 33214633 2020 11 19
Analysis of Tryptophan Metabolites in Serum Using Wide-Isolation Strategies for UHPLC-HRMS/MS. Rubio, Vanessa Y; Cagmat, Joy G; Wang, Gary P; Yost, Richard A; Garrett, Timothy J Analytical chemistry 31927994 2020 02 04
Design and Implementation of a Dual-Probe Microsampling Apparatus for the Direct Analysis of Adherent Mammalian Cells by Ion Mobility-Mass Spectrometry. Domenick, Taylor M; Vedam-Mai, Vinata; Yost, Richard A Analytical chemistry 32786468 2020 09 01
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Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration. Chauhan, Muhammad Zain; Arcuri, Jennifer; Park, Kevin K; Zafar, Maroof Khan; Fatmi, Rabeet; Hackam, Abigail S; Yin, Yuqin; Benowitz, Larry; Goldberg, Jeffrey L; Samarah, Mohammad; Bhattacharya, Sanjoy K iScience 32058951 2020 Feb 21
Five Easy Metrics of Data Quality for LC-MS-Based Global Metabolomics. Zhang, Xinyu; Dong, Jiyang; Raftery, Daniel Analytical chemistry 32865396 2020 10 06
JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding. DiTacchio, Kacee Ann; Kalinowska, Diana; Saran, Anand Rajamani; Byrne, Ashley; Vollmers, Christopher; DiTacchio, Luciano Cell reports 32460011 2020 05 26
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The Role of Elevated Branched-Chain Amino Acids in the Effects of Vertical Sleeve Gastrectomy to Reduce Weight and Improve Glucose Regulation. Bozadjieva Kramer, Nadejda; Evers, Simon S; Shin, Jae Hoon; Silverwood, Sierra; Wang, Yibin; Burant, Charles F; Sandoval, Darleen A; Seeley, Randy J Cell reports 33053352 2020 10 13
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In-Silico-Generated Library for Sensitive Detection of 2-Dimethylaminoethylamine Derivatized FAHFA Lipids Using High-Resolution Tandem Mass Spectrometry. Ding, Jun; Kind, Tobias; Zhu, Quan-Fei; Wang, Yu; Yan, Jing-Wen; Fiehn, Oliver; Feng, Yu-Qi Analytical chemistry 32202765 2020 04 21
Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics. Bonini, Paolo; Kind, Tobias; Tsugawa, Hiroshi; Barupal, Dinesh Kumar; Fiehn, Oliver Analytical chemistry 32390414 2020 06 02
Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and Antiviral Responses in Aedes albopictus. Onyango, Maria G; Attardo, Geoffrey M; Kelly, Erin Taylor; Bialosuknia, Sean M; Stout, Jessica; Banker, Elyse; Kuo, Lili; Ciota, Alexander T; Kramer, Laura D Frontiers in microbiology 33133033 2020
The Emerging and Diverse Roles of Bis(monoacylglycero) Phosphate Lipids in Cellular Physiology and Disease. Showalter, Megan R; Berg, Anastasia L; Nagourney, Alexander; Heil, Hailey; Carraway 3rd, Kermit L; Fiehn, Oliver International journal of molecular sciences 33137979 2020 Oct 29
Omics Integration for Mitochondria Systems Biology. Hu, Xin; Go, Young-Mi; Jones, Dean P Antioxidants & redox signaling 31891667 2020 04 20
Metabolomic Profiling After a Meal Shows Greater Changes and Lower Metabolic Flexibility in Cardiometabolic Diseases. Yu, Elaine A; Yu, Tianwei; Jones, Dean P; Ramirez-Zea, Manuel; Stein, Aryeh D Journal of the Endocrine Society 33134764 2020 Nov 01
Crystal-C: A Computational Tool for Refinement of Open Search Results. Chang, Hui-Yin; Kong, Andy T; da Veiga Leprevost, Felipe; Avtonomov, Dmitry M; Haynes, Sarah E; Nesvizhskii, Alexey I Journal of proteome research 32338005 2020 06 05
Platelet abnormalities in Huntington's disease. Denis, Hélèna L; Lamontagne-Proulx, Jérôme; St-Amour, Isabelle; Mason, Sarah L; Rowley, Jesse W; Cloutier, Nathalie; Tremblay, Marie-Ève; Vincent, Antony T; Gould, Peter V; Chouinard, Sylvain; Weyrich, Andrew S; Rondina, Matthew T; Barker, Roger A; Boilard, Eric; Cicchetti, Francesca Journal of neurology, neurosurgery, and psychiatry 30567722 2019 03
Sepsis alters the transcriptional and translational landscape of human and murine platelets. Middleton, Elizabeth A; Rowley, Jesse W; Campbell, Robert A; Grissom, Colin K; Brown, Samuel M; Beesley, Sarah J; Schwertz, Hansjörg; Kosaka, Yasuhiro; Manne, Bhanu K; Krauel, Krystin; Tolley, Neal D; Eustes, Alicia S; Guo, Li; Paine 3rd, Robert; Harris, Estelle S; Zimmerman, Guy A; Weyrich, Andrew S; Rondina, Matthew T Blood 31366617 2019 09 19
Selenium Deficiency Is Associated with Pro-longevity Mechanisms. Yim, Sun Hee; Clish, Clary B; Gladyshev, Vadim N Cell reports 31141699 2019 05 28
Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae. Kang, Kyo Bin; Ernst, Madeleine; van der Hooft, Justin J J; da Silva, Ricardo R; Park, Junha; Medema, Marnix H; Sung, Sang Hyun; Dorrestein, Pieter C The Plant journal : for cell and molecular biology 30786088 2019 06
Using Pathway Covering to Explore Connections among Metabolites. Midford, Peter E; Latendresse, Mario; O'Maille, Paul E; Karp, Peter D Metabolites 31052521 2019 May 02
Preliminary results of identification and quantification of paclitaxel and its metabolites in human meconium from newborns with gestational chemotherapeutic exposure. Cardonick, Elyce; Broadrup, Robert; Xu, Peining; Doan, Mary T; Jiang, Helen; Snyder, Nathaniel W PloS one 30785914 2019
Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages. Krishnan, Smitha; Ding, Yufang; Saeidi, Nima; Choi, Maria; Sridharan, Gautham V; Sherr, David H; Yarmush, Martin L; Alaniz, Robert C; Jayaraman, Arul; Lee, Kyongbum Cell reports 31533048 2019 Sep 17
Metabolomic Analysis of Liver Tissues for Characterization of Hepatocellular Carcinoma. Ferrarini, Alessia; Di Poto, Cristina; He, Shisi; Tu, Chao; Varghese, Rency S; Kara Balla, Abdalla; Jayatilake, Meth; Li, Zhenzhi; Ghaffari, Kian; Fan, Ziling; Sherif, Zaki A; Kumar, Deepak; Kroemer, Alexander; Tadesse, Mahlet G; Ressom, Habtom W Journal of proteome research 31188000 2019 08 02
Integration of Metabolomics and Transcriptomics to Identify Gene-Metabolite Relationships Specific to Phenotype. Patt, Andrew; Siddiqui, Jalal; Zhang, Bofei; Mathé, Ewy Methods in molecular biology (Clifton, N.J.) 30725469 2019
Mass Spectrometry of Polyurethanes. Crescentini, Tiffany M; May, Jody C; McLean, John A; Hercules, David M Polymer 32831406 2019 Oct 24
Trace, Machine Learning of Signal Images for Trace-Sensitive Mass Spectrometry: A Case Study from Single-Cell Metabolomics. Liu, Zhichao; Portero, Erika P; Jian, Yiren; Zhao, Yunjie; Onjiko, Rosemary M; Zeng, Chen; Nemes, Peter Analytical chemistry 30929422 2019 05 07
Time varying causal network reconstruction of a mouse cell cycle. Masnadi-Shirazi, Maryam; Maurya, Mano R; Pao, Gerald; Ke, Eugene; Verma, Inder M; Subramaniam, Shankar BMC bioinformatics 31142274 2019 May 29
Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop. Baker, Erin S; Patti, Gary J Journal of the American Society for Mass Spectrometry 31440979 2019 Oct
International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis. Thompson, J Will; Adams, Kendra J; Adamski, Jerzy; Asad, Yasmin; Borts, David; Bowden, John A; Byram, Gregory; Dang, Viet; Dunn, Warwick B; Fernandez, Facundo; Fiehn, Oliver; Gaul, David A; Hühmer, Andreas Fr; Kalli, Anastasia; Koal, Therese; Koeniger, Stormy; Mandal, Rupasri; Meier, Florian; Naser, Fuad J; O'Neil, Donna; Pal, Akos; Patti, Gary J; Pham-Tuan, Hai; Prehn, Cornelia; Raynaud, Florence I; Shen, Tong; Southam, Andrew D; St John-Williams, Lisa; Sulek, Karolina; Vasilopoulou, Catherine G; Viant, Mark; Winder, Catherine L; Wishart, David; Zhang, Lun; Zheng, Jiamin; Moseley, M Arthur Analytical chemistry 31638379 2019 11 19
Metabolic rewiring of the hypertensive kidney. Rinschen, Markus M; Palygin, Oleg; Guijas, Carlos; Palermo, Amelia; Palacio-Escat, Nicolas; Domingo-Almenara, Xavier; Montenegro-Burke, Rafael; Saez-Rodriguez, Julio; Staruschenko, Alexander; Siuzdak, Gary Science signaling 31822592 2019 12 10
ADAP-GC 4.0: Application of Clustering-Assisted Multivariate Curve Resolution to Spectral Deconvolution of Gas Chromatography-Mass Spectrometry Metabolomics Data. Smirnov, Aleksandr; Qiu, Yunping; Jia, Wei; Walker, Douglas I; Jones, Dean P; Du, Xiuxia Analytical chemistry 31274283 2019 07 16
Enhanced oxidative phosphorylation in NKT cells is essential for their survival and function. Kumar, Ajay; Pyaram, Kalyani; Yarosz, Emily L; Hong, Hanna; Lyssiotis, Costas A; Giri, Shailendra; Chang, Cheong-Hee Proceedings of the National Academy of Sciences of the United States of America 30910955 2019 04 09
Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinoma. Xu, Jianing; Reznik, Ed; Lee, Ho-Joon; Gundem, Gunes; Jonsson, Philip; Sarungbam, Judy; Bialik, Anna; Sanchez-Vega, Francisco; Creighton, Chad J; Hoekstra, Jake; Zhang, Li; Sajjakulnukit, Peter; Kremer, Daniel; Tolstyka, Zachary; Casuscelli, Jozefina; Stirdivant, Steve; Tang, Jie; Schultz, Nikolaus; Jeng, Paul; Dong, Yiyu; Su, Wenjing; Cheng, Emily H; Russo, Paul; Coleman, Jonathan A; Papaemmanuil, Elli; Chen, Ying-Bei; Reuter, Victor E; Sander, Chris; Kennedy, Scott R; Hsieh, James J; Lyssiotis, Costas A; Tickoo, Satish K; Hakimi, A Ari eLife 30924768 2019 04 01
Early Life Exposure in Mexico to ENvironmental Toxicants (ELEMENT) Project. Perng, Wei; Tamayo-Ortiz, Marcela; Tang, Lu; Sánchez, Brisa N; Cantoral, Alejandra; Meeker, John D; Dolinoy, Dana C; Roberts, Elizabeth F; Martinez-Mier, Esperanza Angeles; Lamadrid-Figueroa, Hector; Song, Peter X K; Ettinger, Adrienne S; Wright, Robert; Arora, Manish; Schnaas, Lourdes; Watkins, Deborah J; Goodrich, Jaclyn M; Garcia, Robin C; Solano-Gonzalez, Maritsa; Bautista-Arredondo, Luis F; Mercado-Garcia, Adriana; Hu, Howard; Hernandez-Avila, Mauricio; Tellez-Rojo, Martha Maria; Peterson, Karen E BMJ open 31455712 2019 Aug 26
Rapid metabolic shifts occur during the transition between hunger and satiety in Drosophila melanogaster. Wilinski, Daniel; Winzeler, Jasmine; Duren, William; Persons, Jenna L; Holme, Kristina J; Mosquera, Johan; Khabiri, Morteza; Kinchen, Jason M; Freddolino, Peter L; Karnovsky, Alla; Dus, Monica Nature communications 31492856 2019 09 06
Key Glycolytic Metabolites in Paralyzed Skeletal Muscle Are Altered Seven Days after Spinal Cord Injury in Mice. Graham, Zachary A; Siedlik, Jacob A; Harlow, Lauren; Sahbani, Karim; Bauman, William A; Tawfeek, Hesham A; Cardozo, Christopher P Journal of neurotrauma 30869558 2019 09 15
Impact of diabetes on male sexual function in streptozotocin-induced diabetic rats: Protective role of soluble epoxide hydrolase inhibitor. Minaz, Nathani; Razdan, Rema; Hammock, Bruce D; Mujwar, Somdutt; Goswami, Sumanta Kumar Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 31102913 2019 Jul
Oxylipins in triglyceride-rich lipoproteins of dyslipidemic subjects promote endothelial inflammation following a high fat meal. Rajamani, Anita; Borkowski, Kamil; Akre, Samir; Fernandez, Andrea; Newman, John W; Simon, Scott I; Passerini, Anthony G Scientific reports 31209255 2019 06 17
Gestational Hypoxia and Programing of Lung Metabolism. Rood, Kristiana; Lopez, Vanessa; La Frano, Michael R; Fiehn, Oliver; Zhang, Lubo; Blood, Arlin B; Wilson, Sean M Frontiers in physiology 31849704 2019
Phytochelatin database: a resource for phytochelatin complexes of nutritional and environmental metals. Dennis, Kristine K; Uppal, Karan; Liu, Ken H; Ma, Chunyu; Liang, Bill; Go, Young-Mi; Jones, Dean P Database : the journal of biological databases and curation 31267134 2019 01 01
Associations of Benzo(ghi)perylene and Heptachlorodibenzo-p-dioxin in Serum of Service Personnel Deployed to Balad, Iraq, and Bagram, Afghanistan Correlates With Perturbed Amino Acid Metabolism in Human Lung Fibroblasts. Smith, Matthew Ryan; Woeller, Collynn F; Uppal, Karan; Thatcher, Thomas H; Walker, Douglas I; Hopke, Philip K; Rohrbeck, Patricia; Mallon, Timothy M; Krahl, Pamela L; Utell, Mark J; Go, Young-Mi; Jones, Dean P Journal of occupational and environmental medicine 31800449 2019 12
The metabolome: A key measure for exposome research in epidemiology. Walker, Douglas I; Valvi, Damaskini; Rothman, Nathaniel; Lan, Qing; Miller, Gary W; Jones, Dean P Current epidemiology reports 31828002 2019
Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurvivors. Evans, Charles R; Karnovsky, Alla; Puskarich, Michael A; Michailidis, George; Jones, Alan E; Stringer, Kathleen A Journal of proteome research 30895797 2019 05 03
ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries. Colby, Sean M; Thomas, Dennis G; Nuñez, Jamie R; Baxter, Douglas J; Glaesemann, Kurt R; Brown, Joseph M; Pirrung, Meg A; Govind, Niranjan; Teeguarden, Justin G; Metz, Thomas O; Renslow, Ryan S Analytical chemistry 30741529 2019 04 02
Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples. Nuñez, Jamie R; Colby, Sean M; Thomas, Dennis G; Tfaily, Malak M; Tolic, Nikola; Ulrich, Elin M; Sobus, Jon R; Metz, Thomas O; Teeguarden, Justin G; Renslow, Ryan S Journal of chemical information and modeling 31430141 2019 09 23
LC-MS-based metabolomics analysis to identify meprin-β-associated changes in kidney tissue from mice with STZ-induced type 1 diabetes and diabetic kidney injury. Gooding, Jessica; Cao, Lei; Ahmed, Faihaa; Mwiza, Jean-Marie; Fernander, Mizpha; Whitaker, Courtney; Acuff, Zach; McRitchie, Susan; Sumner, Susan; Ongeri, Elimelda Moige American journal of physiology. Renal physiology 31411076 2019 10 01
Targeting IDH1 as a Prosenescent Therapy in High-grade Serous Ovarian Cancer. Dahl, Erika S; Buj, Raquel; Leon, Kelly E; Newell, Jordan M; Imamura, Yuka; Bitler, Benjamin G; Snyder, Nathaniel W; Aird, Katherine M Molecular cancer research : MCR 31110157 2019 08
Spatiochemically Profiling Microbial Interactions with Membrane Scaffolded Desorption Electrospray Ionization-Ion Mobility-Imaging Mass Spectrometry and Unsupervised Segmentation. Ellis, Berkley M; Fischer, Caleb N; Martin, Leroy B; Bachmann, Brian O; McLean, John A Analytical chemistry 31600444 2019 11 05
A Comprehensive UHPLC Ion Mobility Quadrupole Time-of-Flight Method for Profiling and Quantification of Eicosanoids, Other Oxylipins, and Fatty Acids. Hinz, Christine; Liggi, Sonia; Mocciaro, Gabriele; Jung, Stephanie; Induruwa, Isuru; Pereira, Milton; Bryant, Clare E; Meckelmann, Sven W; O'Donnell, Valerie B; Farndale, Richard W; Fjeldsted, John; Griffin, Julian L Analytical chemistry 31074960 2019 Jul 02
Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry. Zheng, Xueyun; Smith, Francesca B; Aly, Noor A; Cai, Jingwei; Smith, Richard D; Patterson, Andrew D; Baker, Erin S Analytical and bioanalytical chemistry 31098744 2019 Jul
A review of analytical platforms for accurate bile acid measurement. Dutta, Mainak; Cai, Jingwei; Gui, Wei; Patterson, Andrew D Analytical and bioanalytical chemistry 31127337 2019 Jul
Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS. Plante, Pier-Luc; Francovic-Fontaine, Élina; May, Jody C; McLean, John A; Baker, Erin S; Laviolette, François; Marchand, Mario; Corbeil, Jacques Analytical chemistry 30932474 2019 04 16
Metabolic Labeling of Cultured Mammalian Cells for Stable Isotope-Resolved Metabolomics: Practical Aspects of Tissue Culture and Sample Extraction. Crooks, Daniel R; Fan, Teresa W-M; Linehan, W Marston Methods in molecular biology (Clifton, N.J.) 30725447 2019
Quantification of Isotopologues of Amino Acids by Multiplexed Stable Isotope-Resolved Metabolomics Using Ultrahigh-Resolution Mass Spectrometry Coupled with Direct Infusion. Yang, Ye; Fan, Teresa W-M; Lane, Andrew N; Higashi, Richard M Methods in molecular biology (Clifton, N.J.) 31347110 2019
Improved segmented-scan spectral stitching for stable isotope resolved metabolomics (SIRM) by ultra-high-resolution Fourier transform mass spectrometry. Kang, Woo-Young; Thompson, Patrick T; El-Amouri, Salim S; Fan, Teresa W M; Lane, Andrew N; Higashi, Richard M Analytica chimica acta 31409459 2019 Nov 08
New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells. Couvillion, Sneha P; Zhu, Ying; Nagy, Gabe; Adkins, Joshua N; Ansong, Charles; Renslow, Ryan S; Piehowski, Paul D; Ibrahim, Yehia M; Kelly, Ryan T; Metz, Thomas O The Analyst 30507980 2019 Jan 28
Collision cross section compendium to annotate and predict multi-omic compound identities. Picache, Jaqueline A; Rose, Bailey S; Balinski, Andrzej; Leaptrot, Katrina L; Sherrod, Stacy D; May, Jody C; McLean, John A Chemical science 30774892 2019 Jan 28
Quantifying heterogeneity of expression data based on principal components. Yang, Zi; Michailidis, George Bioinformatics (Oxford, England) 30060088 2019 02 15
IDH1-R132H acts as a tumor suppressor in glioma via epigenetic up-regulation of the DNA damage response. Núñez, Felipe J; Mendez, Flor M; Kadiyala, Padma; Alghamri, Mahmoud S; Savelieff, Masha G; Garcia-Fabiani, Maria B; Haase, Santiago; Koschmann, Carl; Calinescu, Anda-Alexandra; Kamran, Neha; Saxena, Meghna; Patel, Rohin; Carney, Stephen; Guo, Marissa Z; Edwards, Marta; Ljungman, Mats; Qin, Tingting; Sartor, Maureen A; Tagett, Rebecca; Venneti, Sriram; Brosnan-Cashman, Jacqueline; Meeker, Alan; Gorbunova, Vera; Zhao, Lili; Kremer, Daniel M; Zhang, Li; Lyssiotis, Costas A; Jones, Lindsey; Herting, Cameron J; Ross, James L; Hambardzumyan, Dolores; Hervey-Jumper, Shawn; Figueroa, Maria E; Lowenstein, Pedro R; Castro, Maria G Science translational medicine 30760578 2019 02 13
Differential network enrichment analysis reveals novel lipid pathways in chronic kidney disease. Ma, Jing; Karnovsky, Alla; Afshinnia, Farsad; Wigginton, Janis; Rader, Daniel J; Natarajan, Loki; Sharma, Kumar; Porter, Anna C; Rahman, Mahboob; He, Jiang; Hamm, Lee; Shafi, Tariq; Gipson, Debbie; Gadegbeku, Crystal; Feldman, Harold; Michailidis, George; Pennathur, Subramaniam Bioinformatics (Oxford, England) 30887029 2019 09 15
Impaired Amino Acid and TCA Metabolism and Cardiovascular Autonomic Neuropathy Progression in Type 1 Diabetes. Mathew, Anna V; Jaiswal, Mamta; Ang, Lynn; Michailidis, George; Pennathur, Subramaniam; Pop-Busui, Rodica Diabetes 31337616 2019 10
The Klebsiella pneumoniae citrate synthase gene, gltA, influences site specific fitness during infection. Vornhagen, Jay; Sun, Yuang; Breen, Paul; Forsyth, Valerie; Zhao, Lili; Mobley, Harry L T; Bachman, Michael A PLoS pathogens 31449551 2019 08
Application of Low-Cost, Easy-to-Use, Portable Biosensor Systems for Diagnosing Bladder Dysfunctions. Myung, Nosang V; Jung, Sungyong; Kim, Jayoung International neurourology journal 30943698 2019 Mar
Walnuts change lipoprotein composition suppressing TNFα-stimulated cytokine production by diabetic adipocyte. Borkowski, Kamil; Yim, Sun J; Holt, Roberta R; Hackman, Robert M; Keen, Carl L; Newman, John W; Shearer, Gregory C The Journal of nutritional biochemistry 31030167 2019 06
The impact of early-life sub-therapeutic antibiotic treatment (STAT) on excessive weight is robust despite transfer of intestinal microbes. Schulfer, Anjelique F; Schluter, Jonas; Zhang, Yilong; Brown, Quincy; Pathmasiri, Wimal; McRitchie, Susan; Sumner, Susan; Li, Huilin; Xavier, Joao B; Blaser, Martin J The ISME journal 30651608 2019 05
Broad spectrum metabolomics for detection of abnormal metabolic pathways in a mouse model for retinitis pigmentosa. Weiss, Ellen R; Osawa, Shoji; Xiong, Yubin; Dhungana, Suraj; Carlson, James; McRitchie, Susan; Fennell, Timothy R Experimental eye research 30885711 2019 07
Meprin β metalloproteases associated with differential metabolite profiles in the plasma and urine of mice with type 1 diabetes and diabetic nephropathy. Gooding, Jessica; Cao, Lei; Whitaker, Courtney; Mwiza, Jean-Marie; Fernander, Mizpha; Ahmed, Faihaa; Acuff, Zach; McRitchie, Susan; Sumner, Susan; Ongeri, Elimelda Moige BMC nephrology 31023251 2019 04 25
Metabolomics Analyses of Muscle Atrophy Induced by Hind Limb Unloading. Gardell, Stephen J; Zhang, Xiaolei; Kapoor, Nidhi; Petucci, Christopher; Coen, Paul M Methods in molecular biology (Clifton, N.J.) 31127563 2019
Remodeling of substrate consumption in the murine sTAC model of heart failure. Turer, Aslan; Altamirano, Francisco; Schiattarella, Gabriele G; May, Herman; Gillette, Thomas G; Malloy, Craig R; Merritt, Matthew E Journal of molecular and cellular cardiology 31340162 2019 09
UCP2 Overexpression Redirects Glucose into Anabolic Metabolic Pathways. Sreedhar, Annapoorna; Cassell, Teresa; Smith, Parker; Lu, Daiwei; Nam, Hyung W; Lane, Andrew N; Zhao, Yunfeng Proteomics 30556651 2019 02
Metabolic reprogramming and Notch activity distinguish between non-small cell lung cancer subtypes. Sellers, Katherine; Allen, Thaddeus D; Bousamra 2nd, Michael; Tan, JinLian; Méndez-Lucas, Andrés; Lin, Wei; Bah, Nourdine; Chernyavskaya, Yelena; MacRae, James I; Higashi, Richard M; Lane, Andrew N; Fan, Teresa W-M; Yuneva, Mariia O British journal of cancer 31114017 2019 07
Advances in gene ontology utilization improve statistical power of annotation enrichment. Hinderer 3rd, Eugene W; Flight, Robert M; Dubey, Rashmi; MacLeod, James N; Moseley, Hunter N B PloS one 31415589 2019
FoxO Transcription Factors Are Critical Regulators of Diabetes-Related Muscle Atrophy. O'Neill, Brian T; Bhardwaj, Gourav; Penniman, Christie M; Krumpoch, Megan T; Suarez Beltran, Pablo A; Klaus, Katherine; Poro, Kennedy; Li, Mengyao; Pan, Hui; Dreyfuss, Jonathan M; Nair, K Sreekumaran; Kahn, C Ronald Diabetes 30523026 2019 03
Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids. DeFelice, Brian C; Fiehn, Oliver Talanta 30683386 2019 May 01
Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion of 9 Cell-Cell Signaling Molecules from Sympathoadrenal Chromaffin Cells in the Presence of Lithium. Hook, Vivian; Kind, Tobias; Podvin, Sonia; Palazoglu, Mine; Tran, Carol; Toneff, Thomas; Samra, Stephanie; Lietz, Christopher; Fiehn, Oliver ACS chemical neuroscience 30698015 2019 03 20
Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data. Fan, Sili; Kind, Tobias; Cajka, Tomas; Hazen, Stanley L; Tang, W H Wilson; Kaddurah-Daouk, Rima; Irvin, Marguerite R; Arnett, Donna K; Barupal, Dinesh K; Fiehn, Oliver Analytical chemistry 30758187 2019 03 05
Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation. Showalter, Megan R; Wancewicz, Benjamin; Fiehn, Oliver; Archard, Joehleen A; Clayton, Shannon; Wagner, Joseph; Deng, Peter; Halmai, Julian; Fink, Kyle D; Bauer, Gerhard; Fury, Brian; Perotti, Nicholas H; Apperson, Michelle; Butters, Janelle; Belafsky, Peter; Farwell, Gregory; Kuhn, Maggie; Nolta, Jan A; Anderson, Johnathon D Biochemical and biophysical research communications 30926165 2019 05 14
A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium. Barupal, Dinesh K; Zhang, Ying; Shen, Tong; Fan, Sili; Roberts, Bryan S; Fitzgerald, Patrick; Wancewicz, Benjamin; Valdiviez, Luis; Wohlgemuth, Gert; Byram, Gregory; Choy, Ying Yng; Haffner, Bennett; Showalter, Megan R; Vaniya, Arpana; Bloszies, Clayton S; Folz, Jacob S; Kind, Tobias; Flenniken, Ann M; McKerlie, Colin; Nutter, Lauryl M J; Lloyd, Kent C; Fiehn, Oliver Metabolites 31121816 2019 May 22
Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology. Barupal, Dinesh Kumar; Baillie, Rebecca; Fan, Sili; Saykin, Andrew J; Meikle, Peter J; Arnold, Matthias; Nho, Kwangsik; Fiehn, Oliver; Kaddurah-Daouk, Rima; Alzheimer Disease Metabolomics Consortium Alzheimer's & dementia (Amsterdam, Netherlands) 31517024 2019 Dec
SDA: a semi-parametric differential abundance analysis method for metabolomics and proteomics data. Li, Yuntong; Fan, Teresa W M; Lane, Andrew N; Kang, Woo-Young; Arnold, Susanne M; Stromberg, Arnold J; Wang, Chi; Chen, Li BMC bioinformatics 31623550 2019 Oct 17
A Protocol to Compare Methods for Untargeted Metabolomics. Wang, Lingjue; Naser, Fuad J; Spalding, Jonathan L; Patti, Gary J Methods in molecular biology (Clifton, N.J.) 30315456 2019
Pre-analytic Considerations for Mass Spectrometry-Based Untargeted Metabolomics Data. Reinhold, Dominik; Pielke-Lombardo, Harrison; Jacobson, Sean; Ghosh, Debashis; Kechris, Katerina Methods in molecular biology (Clifton, N.J.) 31119672 2019
The metaRbolomics Toolbox in Bioconductor and beyond. Stanstrup, Jan; Broeckling, Corey D; Helmus, Rick; Hoffmann, Nils; Mathé, Ewy; Naake, Thomas; Nicolotti, Luca; Peters, Kristian; Rainer, Johannes; Salek, Reza M; Schulze, Tobias; Schymanski, Emma L; Stravs, Michael A; Thévenot, Etienne A; Treutler, Hendrik; Weber, Ralf J M; Willighagen, Egon; Witting, Michael; Neumann, Steffen Metabolites 31548506 2019 Sep 23
Glutaminase Activity of L-Asparaginase Contributes to Durable Preclinical Activity against Acute Lymphoblastic Leukemia. Chan, Wai-Kin; Horvath, Thomas D; Tan, Lin; Link, Todd; Harutyunyan, Karine G; Pontikos, Michael A; Anishkin, Andriy; Du, Di; Martin, Leona A; Yin, Eric; Rempe, Susan B; Sukharev, Sergei; Konopleva, Marina; Weinstein, John N; Lorenzi, Philip L Molecular cancer therapeutics 31209181 2019 09
Cardiolipin-induced activation of pyruvate dehydrogenase links mitochondrial lipid biosynthesis to TCA cycle function. Li, Yiran; Lou, Wenjia; Raja, Vaishnavi; Denis, Simone; Yu, Wenxi; Schmidtke, Michael W; Reynolds, Christian A; Schlame, Michael; Houtkooper, Riekelt H; Greenberg, Miriam L The Journal of biological chemistry 31186346 2019 07 26
Long-term Effects of Hypothermic Ex Situ Perfusion on Skeletal Muscle Metabolism, Structure, and Force Generation After Transplantation. Gok, Emre; Kubiak, Carrie A; Guy, Erin; Ponder, Mathew; Hoenerhoff, Mark J; Rojas-Pena, Alvaro; Kemp, Stephen W P; Bartlett, Robert H; Ozer, Kagan Transplantation 31205264 2019 10
Hydrogen sulfide perturbs mitochondrial bioenergetics and triggers metabolic reprogramming in colon cells. Libiad, Marouane; Vitvitsky, Victor; Bostelaar, Trever; Bak, Daniel W; Lee, Ho-Joon; Sakamoto, Naoya; Fearon, Eric; Lyssiotis, Costas A; Weerapana, Eranthie; Banerjee, Ruma The Journal of biological chemistry 31213529 2019 08 09
Auditory metabolomics, an approach to identify acute molecular effects of noise trauma. Ji, Lingchao; Lee, Ho-Joon; Wan, Guoqiang; Wang, Guo-Peng; Zhang, Li; Sajjakulnukit, Peter; Schacht, Jochen; Lyssiotis, Costas A; Corfas, Gabriel Scientific reports 31239523 2019 06 25
Serum Polyunsaturated Fatty Acids in Middle Childhood and Body Mass Index Change Through Adolescence. Flannagan, Kerry S; Gahagan, Sheila; Das, Arun K; Burrows, Raquel A; Lozoff, Betsy; Villamor, Eduardo Annals of nutrition & metabolism 31390614 2019
Effects of Gut Bacteria Depletion and High-Na+ and Low-K+ Intake on Circulating Levels of Biogenic Amines. Blaženović, Ivana; Oh, Young Taek; Li, Fan; Ji, Jian; Nguyen, Ahn-Khoi; Wancewicz, Benjamin; Bender, Jeffrey M; Fiehn, Oliver; Youn, Jang H Molecular nutrition & food research 30513547 2019 02
Exosomes Derived from Human Primed Mesenchymal Stem Cells Induce Mitosis and Potentiate Growth Factor Secretion. Yuan, Oliver; Lin, Clayton; Wagner, Joseph; Archard, Joehleen A; Deng, Peter; Halmai, Julian; Bauer, Gerhard; Fink, Kyle D; Fury, Brian; Perotti, Nicholas H; Walker, Jon E; Pollock, Kari; Apperson, Michelle; Butters, Janelle; Belafsky, Peter; Farwell, D Gregory; Kuhn, Maggie; Nolta, Jan; Anderson, Johnathon D Stem cells and development 30638129 2019 03 15
Comparative analysis of obesity-related cardiometabolic and renal biomarkers in human plasma and serum. Rajan, Meenu Rohini; Sotak, Matus; Barrenäs, Fredrik; Shen, Tong; Borkowski, Kamil; Ashton, Nicholas J; Biörserud, Christina; Lindahl, Tomas L; Ramström, Sofia; Schöll, Michael; Lindahl, Per; Fiehn, Oliver; Newman, John W; Perkins, Rosie; Wallenius, Ville; Lange, Stephan; Börgeson, Emma Scientific reports 31659186 2019 10 28
Cancer in the crosshairs: targeting cancer metabolism with hyperpolarized carbon-13 MRI technology. von Morze, Cornelius; Merritt, Matthew E NMR in biomedicine 29870085 2019 10
Chronic maternal cortisol excess during late gestation leads to metabolic alterations in the newborn heart. Walejko, Jacquelyn M; Antolic, Andrew; Koelmel, Jeremy P; Garrett, Timothy J; Edison, Arthur S; Keller-Wood, Maureen American journal of physiology. Endocrinology and metabolism 30620638 2019 Mar 01
Measuring the Integrity of Gas-Phase Conformers of Sodiated 25-Hydroxyvitamin D3 by Drift Tube, Traveling Wave, Trapped, and High-Field Asymmetric Ion Mobility. Oranzi, Nicholas R; Kemperman, Robin H J; Wei, Michael S; Petkovska, Violeta I; Granato, Scott W; Rochon, Benjamin; Kaszycki, Julia; La Rotta, Aurelio; Jeanne Dit Fouque, Kevin; Fernandez-Lima, Francisco; Yost, Richard A Analytical chemistry 30807105 2019 03 19
Metabolomic profiles differ among unique genotypes of a threatened Caribbean coral. Lohr, Kathryn E; Khattri, Ram B; Guingab-Cagmat, Joy; Camp, Emma F; Merritt, Matthew E; Garrett, Timothy J; Patterson, Joshua T Scientific reports 30988456 2019 04 15
Measurement of Pyridine Nucleotides in Biological Samples Using LC-MS/MS. Petucci, Chris; Culver, Jeffrey A; Kapoor, Nidhi; Sessions, E Hampton; Divlianska, Daniela; Gardell, Stephen J Methods in molecular biology (Clifton, N.J.) 31127548 2019
Altered tricarboxylic acid cycle flux in primary myotubes from severely obese humans. Zou, Kai; Hinkley, J Matthew; Park, Sanghee; Zheng, Donghai; Jones, Terry E; Pories, Walter J; Hornby, Pamela J; Lenhard, James; Dohm, G Lynis; Houmard, Joseph A International journal of obesity (2005) 29892037 2019 04
TFAM Enhances Fat Oxidation and Attenuates High-Fat Diet-Induced Insulin Resistance in Skeletal Muscle. Koh, Jin-Ho; Johnson, Matthew L; Dasari, Surendra; LeBrasseur, Nathan K; Vuckovic, Ivan; Henderson, Gregory C; Cooper, Shawna A; Manjunatha, Shankarappa; Ruegsegger, Gregory N; Shulman, Gerald I; Lanza, Ian R; Nair, K Sreekumaran Diabetes 31088855 2019 08
Ablation of adipocyte creatine transport impairs thermogenesis and causes diet-induced obesity. Kazak, Lawrence; Rahbani, Janane F; Samborska, Bozena; Lu, Gina Z; Jedrychowski, Mark P; Lajoie, Mathieu; Zhang, Song; Ramsay, LeeAnn C; Dou, Florence Y; Tenen, Danielle; Chouchani, Edward T; Dzeja, Petras; Watson, Ian R; Tsai, Linus; Rosen, Evan D; Spiegelman, Bruce M Nature metabolism 31161155 2019
The interaction of ceramide 1-phosphate with group IVA cytosolic phospholipase A2 coordinates acute wound healing and repair. MacKnight, H Patrick; Stephenson, Daniel J; Hoeferlin, L Alexis; Benusa, Savannah D; DeLigio, James T; Maus, Kenneth D; Ali, Anika N; Wayne, Jennifer S; Park, Margaret A; Hinchcliffe, Edward H; Brown, Rhoderick E; Ryan, John J; Diegelmann, Robert F; Chalfant, Charles E Science signaling 31796632 2019 12 03
Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics. Ismail, Israa T; Showalter, Megan R; Fiehn, Oliver Metabolites 31640247 2019 Oct 21
Arginine and Carnitine Metabolites Are Altered in Diabetic Retinopathy. Sumarriva, Katherine; Uppal, Karan; Ma, Chunyu; Herren, David J; Wang, Yating; Chocron, Isaac M; Warden, Cassandra; Mitchell, Sabrina L; Burgess, L Goodwin; Goodale, Megan P; Osborn, Melissa P; Ferreira, Allison J; Law, Janice C; Cherney, Edward F; Jones, Dean P; Brantley Jr, Milam A Investigative ophthalmology & visual science 31323682 2019 07 01
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Correlations Between LC-MS/MS-Detected Glycomics and NMR-Detected Metabolomics in Caenorhabditis elegans Development. Sheikh, M Osman; Tayyari, Fariba; Zhang, Sicong; Judge, Michael T; Weatherly, D Brent; Ponce, Francesca V; Wells, Lance; Edison, Arthur S Frontiers in molecular biosciences 31316996 2019
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Vitamin D for the Immune System in Cystic Fibrosis (DISC): a double-blind, multicenter, randomized, placebo-controlled clinical trial. Tangpricha, Vin; Lukemire, Joshua; Chen, Yuqing; Binongo, José Nilo G; Judd, Suzanne E; Michalski, Ellen S; Lee, Moon J; Walker, Seth; Ziegler, Thomas R; Tirouvanziam, Rabin; Zughaier, Susu M; Chesdachai, Supavit; Hermes, Wendy A; Chmiel, James F; Grossmann, Ruth E; Gaggar, Amit; Joseph, Patricia M; Alvarez, Jessica A The American journal of clinical nutrition 30793177 2019 Mar 01
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Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data. Amin, Sara A; Chavez, Elizabeth; Porokhin, Vladimir; Nair, Nikhil U; Hassoun, Soha Microbial cell factories 31196115 2019 Jun 13
Evaluating Separation Selectivity and Collision Cross Section Measurement Reproducibility in Helium, Nitrogen, Argon, and Carbon Dioxide Drift Gases for Drift Tube Ion Mobility-Mass Spectrometry. Morris, Caleb B; May, Jody C; Leaptrot, Katrina L; McLean, John A Journal of the American Society for Mass Spectrometry 30887459 2019 Jun
Simulation of Transportation and Storage and Their Influence on Raman Spectra of Bacteria. Wichmann, Christina; Chhallani, Mehul; Bocklitz, Thomas; Rösch, Petra; Popp, Jürgen Analytical chemistry 31592643 2019 11 05
Interplay Between the Host, the Human Microbiome, and Drug Metabolism. Nichols, Robert G; Peters, Jeffrey M; Patterson, Andrew D Human genomics 31186074 2019 06 11
Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples. Burnum-Johnson, Kristin E; Zheng, Xueyun; Dodds, James N; Ash, Jeremy; Fourches, Denis; Nicora, Carrie D; Wendler, Jason P; Metz, Thomas O; Waters, Katrina M; Jansson, Janet K; Smith, Richard D; Baker, Erin S Trends in analytical chemistry : TRAC 31798197 2019 Jul
De novo synthesis of serine and glycine fuels purine nucleotide biosynthesis in human lung cancer tissues. Fan, Teresa W M; Bruntz, Ronald C; Yang, Ye; Song, Huan; Chernyavskaya, Yelena; Deng, Pan; Zhang, Yan; Shah, Parag P; Beverly, Levi J; Qi, Zhen; Mahan, Angela L; Higashi, Richard M; Dang, Chi V; Lane, Andrew N The Journal of biological chemistry 31337706 2019 09 06
Hepatocyte-Macrophage Acetoacetate Shuttle Protects against Tissue Fibrosis. Puchalska, Patrycja; Martin, Shannon E; Huang, Xiaojing; Lengfeld, Justin E; Daniel, Bence; Graham, Mark J; Han, Xianlin; Nagy, Laszlo; Patti, Gary J; Crawford, Peter A Cell metabolism 30449686 2019 02 05
Asymmetrical flow field-flow fractionation for improved characterization of human plasma lipoproteins. Bria, Carmen R M; Afshinnia, Farsad; Skelly, Patrick W; Rajendiran, Thekkelnaycke M; Kayampilly, Pradeep; Thomas, Thommey P; Andreev, Victor P; Pennathur, Subramaniam; Kim Ratanathanawongs Williams, S Analytical and bioanalytical chemistry 30470915 2019 Jan
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Proposing a validation scheme for 13C metabolite tracer studies in high-resolution mass spectrometry. Schwaiger-Haber, Michaela; Hermann, Gerrit; El Abiead, Yasin; Rampler, Evelyn; Wernisch, Stefanie; Sas, Kelli; Pennathur, Subramaniam; Koellensperger, Gunda Analytical and bioanalytical chemistry 30972471 2019 May
NAD+ augmentation restores mitophagy and limits accelerated aging in Werner syndrome. Fang, Evandro F; Hou, Yujun; Lautrup, Sofie; Jensen, Martin Borch; Yang, Beimeng; SenGupta, Tanima; Caponio, Domenica; Khezri, Rojyar; Demarest, Tyler G; Aman, Yahyah; Figueroa, David; Morevati, Marya; Lee, Ho-Joon; Kato, Hisaya; Kassahun, Henok; Lee, Jong-Hyuk; Filippelli, Deborah; Okur, Mustafa Nazir; Mangerich, Aswin; Croteau, Deborah L; Maezawa, Yoshiro; Lyssiotis, Costas A; Tao, Jun; Yokote, Koutaro; Rusten, Tor Erik; Mattson, Mark P; Jasper, Heinrich; Nilsen, Hilde; Bohr, Vilhelm A Nature communications 31754102 2019 11 21
Noninvasive profiling of sweat-derived lipid mediators for cutaneous research. Agrawal, Karan; Sivamani, Raja K; Newman, John W Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) 30030941 2019 Jan
Innovative technologies for the smart E-Healthcare system. Kim, Wun-Jae; Kim, Jayoung Investigative and clinical urology 30637354 2019 01
Oxylipin Profiling of Alzheimer's Disease in Nondiabetic and Type 2 Diabetic Elderly. Morris, Jill K; Piccolo, Brian D; John, Casey S; Green, Zachary D; Thyfault, John P; Adams, Sean H Metabolites 31491971 2019 Sep 05
Exercise plasma metabolomics and xenometabolomics in obese, sedentary, insulin-resistant women: impact of a fitness and weight loss intervention. Grapov, Dmitry; Fiehn, Oliver; Campbell, Caitlin; Chandler, Carol J; Burnett, Dustin J; Souza, Elaine C; Casazza, Gretchen A; Keim, Nancy L; Newman, John W; Hunter, Gary R; Fernandez, Jose R; Garvey, W Timothy; Hoppel, Charles L; Harper, Mary-Ellen; Adams, Sean H American journal of physiology. Endocrinology and metabolism 31526287 2019 12 01
Plasma metabolomics analysis in sickle cell disease patients with albuminuria - an exploratory study. Elsherif, Laila; Pathmasiri, Wimal; McRitchie, Susan; Archer, David R; Ataga, Kenneth I British journal of haematology 30198565 2019 05
Interplay of Nitric Oxide Synthase (NOS) and SrrAB in Modulation of Staphylococcus aureus Metabolism and Virulence. James, Kimberly L; Mogen, Austin B; Brandwein, Jessica N; Orsini, Silvia S; Ridder, Miranda J; Markiewicz, Mary A; Bose, Jeffrey L; Rice, Kelly C Infection and immunity 30420450 2019 02
Identification of Unknown Metabolomics Mixture Compounds by Combining NMR, MS, and Cheminformatics. Leggett, Abigail; Wang, Cheng; Li, Da-Wei; Somogyi, Arpad; Bruschweiler-Li, Lei; Brüschweiler, Rafael Methods in enzymology 30638535 2019
Untargeted metabolomic analysis in non-fasted diabetic dogs by UHPLC-HRMS. O'Kell, A L; Garrett, T J; Wasserfall, C; Atkinson, M A Metabolomics : Official journal of the Metabolomic Society 30830416 2019 01 22
Boosting NAD+ with a small molecule that activates NAMPT. Gardell, Stephen J; Hopf, Meghan; Khan, Asima; Dispagna, Mauro; Hampton Sessions, E; Falter, Rebecca; Kapoor, Nidhi; Brooks, Jeanne; Culver, Jeffrey; Petucci, Chris; Ma, Chen-Ting; Cohen, Steven E; Tanaka, Jun; Burgos, Emmanuel S; Hirschi, Jennifer S; Smith, Steven R; Sergienko, Eduard; Pinkerton, Anthony B Nature communications 31324777 2019 07 19
NMR and MS-based Stable Isotope-Resolved Metabolomics and Applications in Cancer Metabolism. Lane, Andrew N; Higashi, Richard M; Fan, Teresa W-M Trends in analytical chemistry : TRAC 32523238 2019 Nov
A comprehensive protocol for multiplatform metabolomics analysis in patient-derived skin fibroblasts. Wilkins, Jordan; Sakrikar, Dhananjay; Petterson, Xuan-Mai; Lanza, Ian R; Trushina, Eugenia Metabolomics : Official journal of the Metabolomic Society 31123906 2019 May 23
A conditional mouse model of complex II deficiency manifesting as Leigh-like syndrome. Khazal, Fatimah Al; Holte, Molly Nelson; Bolon, Brad; White, Thomas A; LeBrasseur, Nathan; Iii, L James Maher FASEB journal : official publication of the Federation of American Societies for Experimental Biology 31469588 2019 12
LIM and cysteine-rich domains 1 (LMCD1) regulates skeletal muscle hypertrophy, calcium handling, and force. Ferreira, Duarte M S; Cheng, Arthur J; Agudelo, Leandro Z; Cervenka, Igor; Chaillou, Thomas; Correia, Jorge C; Porsmyr-Palmertz, Margareta; Izadi, Manizheh; Hansson, Alicia; Martínez-Redondo, Vicente; Valente-Silva, Paula; Pettersson-Klein, Amanda T; Estall, Jennifer L; Robinson, Matthew M; Nair, K Sreekumaran; Lanner, Johanna T; Ruas, Jorge L Skeletal muscle 31666122 2019 10 31
17-α estradiol ameliorates age-associated sarcopenia and improves late-life physical function in male mice but not in females or castrated males. Garratt, Michael; Leander, Danielle; Pifer, Kaitlyn; Bower, Brian; Herrera, Jonathan J; Day, Sharlene M; Fiehn, Oliver; Brooks, Susan V; Miller, Richard A Aging cell 30740872 2019 04
Serum and urinary metabolomics and outcomes in cirrhosis. Bajaj, Jasmohan S; Fan, Sili; Thacker, Leroy R; Fagan, Andrew; Gavis, Edith; White, Melanie B; Heuman, Douglas M; Fuchs, Michael; Fiehn, Oliver PloS one 31560724 2019
Metabolome Wide Association Study of Serum Poly and Perfluoroalkyl Substances (PFASs) in Pregnancy and Early Postpartum. Hu, Xin; Li, Shuzhao; Cirillo, Piera M; Krigbaum, Nickilou Y; Tran, ViLinh; Jones, Dean P; Cohn, Barbara A Reproductive toxicology (Elmsford, N.Y.) 31121237 2019 08
Practical Guidelines for 13C-Based NMR Metabolomics. Edison, Arthur S; Le Guennec, Adrien; Delaglio, Frank; Kupče, Ēriks Methods in molecular biology (Clifton, N.J.) 31463840 2019
SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes. Wojcik, Roza; Nagy, Gabe; Attah, Isaac K; Webb, Ian K; Garimella, Sandilya V B; Weitz, Karl K; Hollerbach, Adam; Monroe, Matthew E; Ligare, Marshall R; Nielson, Felicity F; Norheim, Randolph V; Renslow, Ryan S; Metz, Thomas O; Ibrahim, Yehia M; Smith, Richard D Analytical chemistry 31450886 2019 09 17
Quantitative 1H NMR Metabolomics Reveal Distinct Metabolic Adaptations in Human Macrophages Following Differential Activation. Fuchs, Amanda L; Schiller, Sage M; Keegan, Wyatt J; Ammons, Mary Cloud B; Eilers, Brian; Tripet, Brian; Copié, Valérie Metabolites 31652958 2019 Oct 24
Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L. Ernst, Madeleine; Nothias, Louis-Félix; van der Hooft, Justin J J; Silva, Ricardo R; Saslis-Lagoudakis, C Haris; Grace, Olwen M; Martinez-Swatson, Karen; Hassemer, Gustavo; Funez, Luís A; Simonsen, Henrik T; Medema, Marnix H; Staerk, Dan; Nilsson, Niclas; Lovato, Paola; Dorrestein, Pieter C; Rønsted, Nina Frontiers in plant science 31333695 2019
Learning representations of microbe-metabolite interactions. Morton, James T; Aksenov, Alexander A; Nothias, Louis Felix; Foulds, James R; Quinn, Robert A; Badri, Michelle H; Swenson, Tami L; Van Goethem, Marc W; Northen, Trent R; Vazquez-Baeza, Yoshiki; Wang, Mingxun; Bokulich, Nicholas A; Watters, Aaron; Song, Se Jin; Bonneau, Richard; Dorrestein, Pieter C; Knight, Rob Nature methods 31686038 2019 12
Dual cationic-anionic profiling of metabolites in a single identified cell in a live Xenopus laevis embryo by microprobe CE-ESI-MS. Portero, Erika P; Nemes, Peter The Analyst 30542678 2019 Jan 28
Automated Analysis of Large-Scale NMR Data Generates Metabolomic Signatures and Links Them to Candidate Metabolites. Khalili, Bita; Tomasoni, Mattia; Mattei, Mirjam; Mallol Parera, Roger; Sonmez, Reyhan; Krefl, Daniel; Rueedi, Rico; Bergmann, Sven Journal of proteome research 31318216 2019 09 06
Advanced Statistical Methods for NMR-Based Metabolomics. Zhang, Dabao; Zhang, Min Methods in molecular biology (Clifton, N.J.) 31463861 2019
BayesMetab: treatment of missing values in metabolomic studies using a Bayesian modeling approach. Shah, Jasmit; Brock, Guy N; Gaskins, Jeremy BMC bioinformatics 31861984 2019 Dec 20
Alkali Metal Cation Adduct Effect on Polybutylene Adipate Oligomers: Ion Mobility-Mass Spectrometry. Crescentini, Tiffany M; May, Jody C; McLean, John A; Hercules, David M Polymer 31839686 2019 May 31
New Frontiers in Lipidomics Analyses using Structurally Selective Ion Mobility-Mass Spectrometry. Harris, Rachel A; Leaptrot, Katrina L; May, Jody C; McLean, John A Trends in analytical chemistry : TRAC 31983792 2019 Jul
Downregulation of CENPF Remodels Prostate Cancer Cells and Alters Cellular Metabolism. Shahid, Muhammad; Kim, Minhyung; Lee, Min Young; Yeon, Austin; You, Sungyong; Kim, Hyung L; Kim, Jayoung Proteomics 30957416 2019 06
Dataset of growth cone-enriched lipidome and proteome of embryonic to early postnatal mouse brain. Trzeciecka, Anna; Bhattacharya, Sanjoy K Data in brief 31016214 2019 Jun
Topological and functional comparison of community detection algorithms in biological networks. Rahiminejad, Sara; Maurya, Mano R; Subramaniam, Shankar BMC bioinformatics 31029085 2019 Apr 27
Mitochondrial fusion supports increased oxidative phosphorylation during cell proliferation. Yao, Cong-Hui; Wang, Rencheng; Wang, Yahui; Kung, Che-Pei; Weber, Jason D; Patti, Gary J eLife 30694178 2019 01 29
Systems-level analysis of isotopic labeling in untargeted metabolomic data by X13CMS. Llufrio, Elizabeth M; Cho, Kevin; Patti, Gary J Nature protocols 31168088 2019 07
Identification of bioactive metabolites using activity metabolomics. Rinschen, Markus M; Ivanisevic, Julijana; Giera, Martin; Siuzdak, Gary Nature reviews. Molecular cell biology 30814649 2019 06
Development of an Ex-Situ Limb Perfusion System for a Rodent Model. Gok, Emre; Alghanem, Fares; Moon, Ruth; Guy, Erin; Rojas-Pena, Alvaro; Bartlett, Robert H; Ozer, Kagan ASAIO journal (American Society for Artificial Internal Organs : 1992) 29595532 2019 02
Metabolomic profiles and development of metabolic risk during the pubertal transition: a prospective study in the ELEMENT Project. Perng, Wei; Tang, Lu; Song, Peter X K; Tellez-Rojo, Martha Maria; Cantoral, Alejandra; Peterson, Karen E Pediatric research 30297880 2019 02
Rosiglitazone remodels the lipid droplet and britens human visceral and subcutaneous adipocytes ex vivo. Lee, Mi-Jeong; Jash, Sukanta; Jones, Jessica E C; Puri, Vishwajeet; Fried, Susan K Journal of lipid research 30782959 2019 04
Macrophage-Released Pyrimidines Inhibit Gemcitabine Therapy in Pancreatic Cancer. Halbrook, Christopher J; Pontious, Corbin; Kovalenko, Ilya; Lapienyte, Laura; Dreyer, Stephan; Lee, Ho-Joon; Thurston, Galloway; Zhang, Yaqing; Lazarus, Jenny; Sajjakulnukit, Peter; Hong, Hanna S; Kremer, Daniel M; Nelson, Barbara S; Kemp, Samantha; Zhang, Li; Chang, David; Biankin, Andrew; Shi, Jiaqi; Frankel, Timothy L; Crawford, Howard C; Morton, Jennifer P; Pasca di Magliano, Marina; Lyssiotis, Costas A Cell metabolism 30827862 2019 06 04
Glycolysis Is an Intrinsic Factor for Optimal Replication of a Norovirus. Passalacqua, Karla D; Lu, Jia; Goodfellow, Ian; Kolawole, Abimbola O; Arche, Jacob R; Maddox, Robert J; Carnahan, Kelly E; O'Riordan, Mary X D; Wobus, Christiane E mBio 30862747 2019 03 12
Reduced mitochondrial lipid oxidation leads to fat accumulation in myosteatosis. Gumucio, Jonathan P; Qasawa, Austin H; Ferrara, Patrick J; Malik, Afshan N; Funai, Katsuhiko; McDonagh, Brian; Mendias, Christopher L FASEB journal : official publication of the Federation of American Societies for Experimental Biology 30939247 2019 07
Maternal pre-pregnancy weight status modifies the influence of PUFAs and inflammatory biomarkers in breastmilk on infant growth. Nuss, Henry; Altazan, Abby; Zabaleta, Jovanny; Sothern, Melinda; Redman, Leanne PloS one 31141526 2019
A large-scale analysis of targeted metabolomics data from heterogeneous biological samples provides insights into metabolite dynamics. Lee, Ho-Joon; Kremer, Daniel M; Sajjakulnukit, Peter; Zhang, Li; Lyssiotis, Costas A Metabolomics : Official journal of the Metabolomic Society 31289941 2019 07 09
Mitochondrial PE potentiates respiratory enzymes to amplify skeletal muscle aerobic capacity. Heden, Timothy D; Johnson, Jordan M; Ferrara, Patrick J; Eshima, Hiroaki; Verkerke, Anthony R P; Wentzler, Edward J; Siripoksup, Piyarat; Narowski, Tara M; Coleman, Chanel B; Lin, Chien-Te; Ryan, Terence E; Reidy, Paul T; de Castro Brás, Lisandra E; Karner, Courtney M; Burant, Charles F; Maschek, J Alan; Cox, James E; Mashek, Douglas G; Kardon, Gabrielle; Boudina, Sihem; Zeczycki, Tonya N; Rutter, Jared; Shaikh, Saame Raza; Vance, Jean E; Drummond, Micah J; Neufer, P Darrell; Funai, Katsuhiko Science advances 31535029 2019 Sep
Skeletal muscle interstitial fluid metabolomics at rest and associated with an exercise bout: application in rats and humans. Zhang, Jie; Bhattacharyya, Sudeepa; Hickner, Robert C; Light, Alan R; Lambert, Christopher J; Gale, Bruce K; Fiehn, Oliver; Adams, Sean H American journal of physiology. Endocrinology and metabolism 30398905 2019 01 01
Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH. Gallagher, Tara; Phan, Joann; Oliver, Andrew; Chase, Alexander B; England, Whitney E; Wandro, Stephen; Hendrickson, Clark; Riedel, Stefan F; Whiteson, Katrine Journal of bacteriology 30642989 2019 04 01
Kinetic Analysis of Hepatic Metabolism Using Hyperpolarized Dihydroxyacetone. Kirpich, Alexander; Ragavan, Mukundan; Bankson, James A; McIntyre, Lauren M; Merritt, Matthew E Journal of chemical information and modeling 30602117 2019 01 28
Age-dependent changes in metabolite profile and lipid saturation in dystrophic mice. Lee-McMullen, Brittany; Chrzanowski, Stephen M; Vohra, Ravneet; Forbes, Sean C; Vandenborne, Krista; Edison, Arthur S; Walter, Glenn A NMR in biomedicine 30848538 2019 05
Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values. Koelmel, Jeremy P; Cochran, Jason A; Ulmer, Candice Z; Levy, Allison J; Patterson, Rainey E; Olsen, Berkley C; Yost, Richard A; Bowden, John A; Garrett, Timothy J BMC bioinformatics 31035918 2019 Apr 29
Proteometabolomics of Melphalan Resistance in Multiple Myeloma. Koomen, David C; Guingab-Cagmat, Joy D; Oliveira, Paula S; Fang, Bin; Liu, Min; Welsh, Eric A; Meads, Mark B; Nguyen, Tuan; Meke, Laurel; Eschrich, Steven A; Shain, Kenneth H; Garrett, Timothy J; Koomen, John M Methods in molecular biology (Clifton, N.J.) 31127562 2019
Rapid Quantitation of 25-Hydroxyvitamin D2 and D3 in Human Serum Using Liquid Chromatography/Drift Tube Ion Mobility-Mass Spectrometry. Oranzi, Nicholas R; Lei, Jiajun; Kemperman, Robin H J; Chouinard, Christopher D; Holmquist, Brett; Garrett, Timothy J; Yost, Richard A Analytical chemistry 31592654 2019 11 05
The mitochondrial retrograde signaling regulates Wnt signaling to promote tumorigenesis in colon cancer. Wen, Yang-An; Xiong, Xiaopeng; Scott, Timothy; Li, Austin T; Wang, Chi; Weiss, Heidi L; Tan, Li; Bradford, Emily; Fan, Teresa W M; Chandel, Navdeep S; Barrett, Terrence A; Gao, Tianyan Cell death and differentiation 30659235 2019 Oct
Patatin-like phospholipase domain–containing protein 3 promotes transfer of essential fatty acids from triglycerides to phospholipids in hepatic lipid droplets. Mitsche, Matthew A; Hobbs, Helen H; Cohen, Jonathan C The Journal of biological chemistry 29555681 2018 05 04
A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements. Orton, Daniel J; Tfaily, Malak M; Moore, Ronald J; LaMarche, Brian L; Zheng, Xueyun; Fillmore, Thomas L; Chu, Rosalie K; Weitz, Karl K; Monroe, Matthew E; Kelly, Ryan T; Smith, Richard D; Baker, Erin S Analytical chemistry 29161511 2018 Jan 02
Radioresistant Cervical Cancers Are Sensitive to Inhibition of Glycolysis and Redox Metabolism. Rashmi, Ramachandran; Huang, Xiaojing; Floberg, John M; Elhammali, Adnan E; McCormick, Michael L; Patti, Gary J; Spitz, Douglas R; Schwarz, Julie K Cancer research 29339540 2018 Mar 15
New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis. Mitchell, Joshua M; Flight, Robert M; Wang, Qing Jun; Higashi, Richard M; Fan, Teresa W-M; Lane, Andrew N; Moseley, Hunter N B Metabolomics : Official journal of the Metabolomic Society 30830442 2018 09 17
Propagating annotations of molecular networks using in silico fragmentation. da Silva, Ricardo R; Wang, Mingxun; Nothias, Louis-Félix; van der Hooft, Justin J J; Caraballo-Rodríguez, Andrés Mauricio; Fox, Evan; Balunas, Marcy J; Klassen, Jonathan L; Lopes, Norberto Peporine; Dorrestein, Pieter C PLoS computational biology 29668671 2018 04
A Robust and Quantitative Reporter System To Evaluate Noncanonical Amino Acid Incorporation in Yeast. Stieglitz, Jessica T; Kehoe, Haixing P; Lei, Ming; Van Deventer, James A ACS synthetic biology 30139255 2018 Sep 21
Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function. Lam, Wing Y; Jash, Arijita; Yao, Cong-Hui; D'Souza, Lucas; Wong, Rachel; Nunley, Ryan M; Meares, Gordon P; Patti, Gary J; Bhattacharya, Deepta Cell reports 30157439 2018 08 28
Transport-exclusion pharmacology to localize lactate dehydrogenase activity within cells. Niu, Xiangfeng; Chen, Ying-Jr; Crawford, Peter A; Patti, Gary J Cancer & metabolism 30559963 2018
Effects of stimulation technique, anatomical region, and time on human sweat lipid mediator profiles. Agrawal, Karan; Waller, Justin D; Pedersen, Theresa L; Newman, John W Prostaglandins & other lipid mediators 28942325 2018 01
Obesity-induced changes in lipid mediators persist after weight loss. Hernandez-Carretero, A; Weber, N; La Frano, M R; Ying, W; Lantero Rodriguez, J; Sears, D D; Wallenius, V; Börgeson, E; Newman, J W; Osborn, O International journal of obesity (2005) 29089614 2018 04
Establishing and Performing Targeted Multi-residue Analysis for Lipid Mediators and Fatty Acids in Small Clinical Plasma Samples. Pedersen, Theresa L; Newman, John W Methods in molecular biology (Clifton, N.J.) 29363074 2018
A role for long-chain acyl-CoA synthetase-4 (ACSL4) in diet-induced phospholipid remodeling and obesity-associated adipocyte dysfunction. Killion, Elizabeth A; Reeves, Andrew R; El Azzouny, Mahmoud A; Yan, Qing-Wu; Surujon, Defne; Griffin, John D; Bowman, Thomas A; Wang, Chunyan; Matthan, Nirupa R; Klett, Eric L; Kong, Dong; Newman, John W; Han, Xianlin; Lee, Mi-Jeong; Coleman, Rosalind A; Greenberg, Andrew S Molecular metabolism 29398618 2018 03
Innovations in asthma therapy: is there a role for inhaled statins? Zeki, Amir A; Elbadawi-Sidhu, Mona Expert review of respiratory medicine 29575963 2018 06
Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed by Neuropeptidomics Mass Spectrometry. Hook, Vivian; Lietz, Christopher B; Podvin, Sonia; Cajka, Tomas; Fiehn, Oliver Journal of the American Society for Mass Spectrometry 29667161 2018 May
The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis. Wandro, Stephen; Osborne, Stephanie; Enriquez, Claudia; Bixby, Christine; Arrieta, Antonio; Whiteson, Katrine mSphere 29875143 2018 Jun 27
Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicago spp. Revealed by Metabolomic and Gene Expression Profiles. Gifford, Isaac; Battenberg, Kai; Vaniya, Arpana; Wilson, Alex; Tian, Li; Fiehn, Oliver; Berry, Alison M Frontiers in plant science 30364174 2018
Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue. Sun, Xuezheng; Stewart, Delisha A; Sandhu, Rupninder; Kirk, Erin L; Pathmasiri, Wimal W; McRitchie, Susan L; Clark, Robert F; Troester, Melissa A; Sumner, Susan J PloS one 29668675 2018
Pioglitazone improves hepatic mitochondrial function in a mouse model of nonalcoholic steatohepatitis. Kalavalapalli, Srilaxmi; Bril, Fernando; Koelmel, Jeremy P; Abdo, Kaitlyn; Guingab, Joy; Andrews, Paige; Li, Wen-Yi; Jose, Dhanya; Yost, Richard A; Frye, Reginald F; Garrett, Timothy J; Cusi, Kenneth; Sunny, Nishanth E American journal of physiology. Endocrinology and metabolism 29634314 2018 08 01
Elevated Nicotinamide Phosphoribosyl Transferase in Skeletal Muscle Augments Exercise Performance and Mitochondrial Respiratory Capacity Following Exercise Training. Brouwers, Bram; Stephens, Natalie A; Costford, Sheila R; Hopf, Meghan E; Ayala, Julio E; Yi, Fanchao; Xie, Hui; Li, Jian-Liang; Gardell, Stephen J; Sparks, Lauren M; Smith, Steven R Frontiers in physiology 29942262 2018
Use of principle component analysis to quantitatively score the equine metabolic syndrome phenotype in an Arabian horse population. Lewis, Samantha L; Holl, Heather M; Long, Maureen T; Mallicote, Martha F; Brooks, Samantha A PloS one 30001422 2018
Optimization of Folch, Bligh-Dyer, and Matyash sample-to-extraction solvent ratios for human plasma-based lipidomics studies. Ulmer, Candice Z; Jones, Christina M; Yost, Richard A; Garrett, Timothy J; Bowden, John A Analytica chimica acta 30292311 2018 Dec 11
Glutamine-derived 2-hydroxyglutarate is associated with disease progression in plasma cell malignancies. Gonsalves, Wilson I; Ramakrishnan, Vijay; Hitosugi, Taro; Ghosh, Toshi; Jevremovic, Dragan; Dutta, Tumpa; Sakrikar, Dhananjay; Petterson, Xuan-Mai; Wellik, Linda; Kumar, Shaji K; Nair, K Sreekumaran JCI insight 29321378 2018 01 11
Urinary Metabolites Associated with Blood Pressure on a Low- or High-Sodium Diet. Cheng, Yuan; Song, Haiying; Pan, Xiaoqing; Xue, Hong; Wan, Yifei; Wang, Tao; Tian, Zhongmin; Hou, Entai; Lanza, Ian R; Liu, Pengyuan; Liu, Yong; Laud, Purushottam W; Usa, Kristie; He, Yongcheng; Liang, Mingyu Theranostics 29556335 2018
Lower Fasted-State but Greater Increase in Muscle Protein Synthesis in Response to Elevated Plasma Amino Acids in Obesity. Tran, Lee; Kras, Katon A; Hoffman, Nyssa; Ravichandran, Jayachandran; Dickinson, Jared M; D'Lugos, Andrew; Carroll, Chad C; Patel, Shivam H; Mandarino, Lawrence J; Roust, Lori; Katsanos, Christos S Obesity (Silver Spring, Md.) 29896930 2018 Jul
Glycolytic Stimulation Is Not a Requirement for M2 Macrophage Differentiation. Wang, Feilong; Zhang, Song; Vuckovic, Ivan; Jeon, Ryounghoon; Lerman, Amir; Folmes, Clifford D; Dzeja, Petras P; Herrmann, Joerg Cell metabolism 30184486 2018 09 04
Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. Barupal, Dinesh Kumar; Fan, Sili; Fiehn, Oliver Current opinion in biotechnology 29413745 2018 12
Application of Large-Scale Aptamer-Based Proteomic Profiling to Planned Myocardial Infarctions. Jacob, Jaison; Ngo, Debby; Finkel, Nancy; Pitts, Rebecca; Gleim, Scott; Benson, Mark D; Keyes, Michelle J; Farrell, Laurie A; Morgan, Thomas; Jennings, Lori L; Gerszten, Robert E Circulation 29222138 2018 Mar 20
Genetic Architecture of the Cardiovascular Risk Proteome. Benson, Mark D; Yang, Qiong; Ngo, Debby; Zhu, Yineng; Shen, Dongxiao; Farrell, Laurie A; Sinha, Sumita; Keyes, Michelle J; Vasan, Ramachandran S; Larson, Martin G; Smith, J Gustav; Wang, Thomas J; Gerszten, Robert E Circulation 29258991 2018 03 13
Shifts in the Gut Metabolome and Clostridium difficile Transcriptome throughout Colonization and Infection in a Mouse Model. Fletcher, Joshua R; Erwin, Samantha; Lanzas, Cristina; Theriot, Casey M mSphere 29600278 2018 Mar-Apr
RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites. Zhang, Bofei; Hu, Senyang; Baskin, Elizabeth; Patt, Andrew; Siddiqui, Jalal K; Mathé, Ewy A Metabolites 29470400 2018 Feb 22
Two complementary reversed-phase separations for comprehensive coverage of the semipolar and nonpolar metabolome. Naser, Fuad J; Mahieu, Nathaniel G; Wang, Lingjue; Spalding, Jonathan L; Johnson, Stephen L; Patti, Gary J Analytical and bioanalytical chemistry 29256075 2018 Feb
Trace Phosphate Improves ZIC-pHILIC Peak Shape, Sensitivity, and Coverage for Untargeted Metabolomics. Spalding, Jonathan L; Naser, Fuad J; Mahieu, Nathaniel G; Johnson, Stephen L; Patti, Gary J Journal of proteome research 30160483 2018 10 05
Intestine farnesoid X receptor agonist and the gut microbiota activate G-protein bile acid receptor-1 signaling to improve metabolism. Pathak, Preeti; Xie, Cen; Nichols, Robert G; Ferrell, Jessica M; Boehme, Shannon; Krausz, Kristopher W; Patterson, Andrew D; Gonzalez, Frank J; Chiang, John Y L Hepatology (Baltimore, Md.) 29486523 2018 10
Hepatic steatosis risk is partly driven by increased de novo lipogenesis following carbohydrate consumption. Sanders, Francis W B; Acharjee, Animesh; Walker, Celia; Marney, Luke; Roberts, Lee D; Imamura, Fumiaki; Jenkins, Benjamin; Case, Jack; Ray, Sumantra; Virtue, Samuel; Vidal-Puig, Antonio; Kuh, Diana; Hardy, Rebecca; Allison, Michael; Forouhi, Nita; Murray, Andrew J; Wareham, Nick; Vacca, Michele; Koulman, Albert; Griffin, Julian L Genome biology 29925420 2018 06 20
Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. MacLean, Brendan X; Pratt, Brian S; Egertson, Jarrett D; MacCoss, Michael J; Smith, Richard D; Baker, Erin S Journal of the American Society for Mass Spectrometry 30047074 2018 Nov
Chiral separation of diastereomers of the cyclic nonapeptides vasopressin and desmopressin by uniform field ion mobility mass spectrometry. Phillips, Shawn T; Dodds, James N; Ellis, Berkley M; May, Jody C; McLean, John A Chemical communications (Cambridge, England) 30063231 2018 Aug 21
Isotope Tracing Untargeted Metabolomics Reveals Macrophage Polarization-State-Specific Metabolic Coordination across Intracellular Compartments. Puchalska, Patrycja; Huang, Xiaojing; Martin, Shannon E; Han, Xianlin; Patti, Gary J; Crawford, Peter A iScience 30448730 2018 Nov 30
Shared and distinct lipid-lipid interactions in plasma and affected tissues in a diabetic mouse model. Sas, Kelli M; Lin, Jiahe; Rajendiran, Thekkelnaycke M; Soni, Tanu; Nair, Viji; Hinder, Lucy M; Jagadish, Hosagrahar V; Gardner, Thomas W; Abcouwer, Steven F; Brosius 3rd, Frank C; Feldman, Eva L; Kretzler, Matthias; Michailidis, George; Pennathur, Subramaniam Journal of lipid research 29237716 2018 02
Septic Shock Nonsurvivors Have Persistently Elevated Acylcarnitines Following Carnitine Supplementation. Puskarich, Michael A; Evans, Charles R; Karnovsky, Alla; Das, Arun K; Jones, Alan E; Stringer, Kathleen A Shock (Augusta, Ga.) 29384504 2018 Apr
Biochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors. Holt, Melissa C; Assar, Zahra; Beheshti Zavareh, Reza; Lin, Lin; Anglin, Justin; Mashadova, Oksana; Haldar, Daniel; Mullarky, Edouard; Kremer, Daniel M; Cantley, Lewis C; Kimmelman, Alec C; Stein, Adam J; Lairson, Luke L; Lyssiotis, Costas A Biochemistry 30365304 2018 11 27
Obesogenic diets alter metabolism in mice. Showalter, Megan R; Nonnecke, Eric B; Linderholm, A L; Cajka, Tomas; Sa, Michael R; Lönnerdal, Bo; Kenyon, Nicholas J; Fiehn, Oliver PloS one 29324762 2018
Alpha-oxoglutarate inhibits the proliferation of immortalized normal bladder epithelial cells via an epigenetic switch involving ARID1A. Shahid, Muhammad; Gull, Nicole; Yeon, Austin; Cho, Eunho; Bae, Jooeun; Yoon, Hyun Seok; You, Sungyong; Yoon, Hana; Kim, Minjung; Berman, Benjamin P; Kim, Jayoung Scientific reports 29540744 2018 Mar 14
Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites. Gao, Bei; Gallagher, Tara; Zhang, Ying; Elbadawi-Sidhu, Mona; Lai, Zijuan; Fiehn, Oliver; Whiteson, Katrine L mSphere 29695623 2018 Apr 25
An inhibitor of soluble epoxide hydrolase ameliorates diabetes-induced learning and memory impairment in rats. Minaz, Nathani; Razdan, Rema; Hammock, Bruce D; Goswami, Sumanta Kumar Prostaglandins & other lipid mediators 29751149 2018 May
Oral ibuprofen differentially affects plasma and sweat lipid mediator profiles in healthy adult males. Agrawal, Karan; Bosviel, Rémy; Piccolo, Brian D; Newman, John W Prostaglandins & other lipid mediators 29778785 2018 07
Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. Nagy-Szakal, Dorottya; Barupal, Dinesh K; Lee, Bohyun; Che, Xiaoyu; Williams, Brent L; Kahn, Ellie J R; Ukaigwe, Joy E; Bateman, Lucinda; Klimas, Nancy G; Komaroff, Anthony L; Levine, Susan; Montoya, Jose G; Peterson, Daniel L; Levin, Bruce; Hornig, Mady; Fiehn, Oliver; Lipkin, W Ian Scientific reports 29968805 2018 07 03
Menthol, a unique urinary volatile compound, is associated with chronic inflammation in interstitial cystitis. Shahid, Muhammad; Lee, Min Young; Yeon, Austin; Cho, Eunho; Sairam, Vikram; Valdiviez, Luis; You, Sungyong; Kim, Jayoung Scientific reports 30022124 2018 Jul 18
Umbilical cord blood metabolomics reveal distinct signatures of dyslipidemia prior to bronchopulmonary dysplasia and pulmonary hypertension. La Frano, Michael R; Fahrmann, Johannes F; Grapov, Dmitry; Pedersen, Theresa L; Newman, John W; Fiehn, Oliver; Underwood, Mark A; Mestan, Karen; Steinhorn, Robin H; Wedgwood, Stephen American journal of physiology. Lung cellular and molecular physiology 30113229 2018 11 01
MeCP2 isoform e1 mutant mice recapitulate motor and metabolic phenotypes of Rett syndrome. Vogel Ciernia, Annie; Yasui, Dag H; Pride, Michael C; Durbin-Johnson, Blythe; Noronha, Adriana B; Chang, Alene; Knotts, Trina A; Rutkowsky, Jennifer R; Ramsey, Jon J; Crawley, Jacqueline N; LaSalle, Janine M Human molecular genetics 30137367 2018 12 01
Quantitative Proteomic Analysis Reveals Caffeine-Perturbed Proteomic Profiles in Normal Bladder Epithelial Cells. Shahid, Muhammad; Kim, Minhyung; Yeon, Austin; Andres, Allen M; You, Sungyong; Kim, Jayoung Proteomics 30232827 2018 10
Human-like hyperplastic prostate with low ZIP1 induced solely by Zn deficiency in rats. Fong, Louise Y; Jing, Ruiyan; Smalley, Karl J; Wang, Zi-Xuan; Taccioli, Cristian; Fan, Sili; Chen, Hongping; Alder, Hansjuerg; Huebner, Kay; Farber, John L; Fiehn, Oliver; Croce, Carlo M Proceedings of the National Academy of Sciences of the United States of America 30397150 2018 11 20
Epidermal growth factor expression as a predictor of chemotherapeutic resistance in muscle-invasive bladder cancer. Mansour, Ahmed M; Abdelrahim, Mona; Laymon, Mahmoud; Elsherbeeny, Mamdouh; Sultan, Mohammed; Shokeir, Ahmed; Mosbah, Ahmed; Abol-Enein, Hassan; Awadalla, Amira; Cho, Eunho; Sairam, Vikram; Park, Taeeun D; Shahid, Muhammad; Kim, Jayoung BMC urology 30413194 2018 Nov 09
Stable Isotope-Resolved Metabolomic Differences between Hormone-Responsive and Triple-Negative Breast Cancer Cell Lines. Winnike, Jason H; Stewart, Delisha A; Pathmasiri, Wimal W; McRitchie, Susan L; Sumner, Susan J International journal of breast cancer 30363973 2018
Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion. Verhoeven, Koen J F; Verbon, Eline H; van Gurp, Thomas P; Oplaat, Carla; Ferreira de Carvalho, Julie; Morse, Alison M; Stahl, Mark; Macel, Mirka; McIntyre, Lauren M The New phytologist 29034954 2018 01
Pilot Study of Metabolomics and Psychoneurological Symptoms in Women With Early Stage Breast Cancer. Lyon, Debra E; Starkweather, Angela; Yao, Yingwei; Garrett, Timothy; Kelly, Debra Lynch; Menzies, Victoria; Dereziński, Paweł; Datta, Susmita; Kumar, Sreelakshmy; Jackson-Cook, Colleen Biological research for nursing 29258398 2018 03
Lower Concentrations of Circulating Medium and Long-Chain Acylcarnitines Characterize Insulin Resistance in Persons with HIV. Bailin, Samuel S; Jenkins, Cathy A; Petucci, Christopher; Culver, Jeffrey A; Shepherd, Bryan E; Fessel, Joshua P; Hulgan, Todd; Koethe, John R AIDS research and human retroviruses 29607651 2018 06
Metabolomic profiles associated with bone mineral density in US Caucasian women. Zhao, Qi; Shen, Hui; Su, Kuan-Jui; Zhang, Ji-Gang; Tian, Qing; Zhao, Lan-Juan; Qiu, Chuan; Zhang, Qiang; Garrett, Timothy J; Liu, Jiawang; Deng, Hong-Wen Nutrition & metabolism 30116286 2018
Influence of Experimental Conditions on the Ratio of 25-Hydroxyvitamin D3 Conformers for Validating a Liquid Chromatography/Ion Mobility-Mass Spectrometry Method for Routine Quantitation. Oranzi, Nicholas R; Polfer, Nicolas C; Lei, Jiajun; Yost, Richard A Analytical chemistry 30379063 2018 11 20
NIST lipidomics workflow questionnaire: an assessment of community-wide methodologies and perspectives. Bowden, John A; Ulmer, Candice Z; Jones, Christina M; Koelmel, Jeremy P; Yost, Richard A Metabolomics : Official journal of the Metabolomic Society 30830346 2018 03 20
Antibacterial Muraymycins from Mutant Strains of Streptomyces sp. NRRL 30471. Cui, Zheng; Wang, Xiachang; Koppermann, Stefan; Thorson, Jon S; Ducho, Christian; Van Lanen, Steven G Journal of natural products 29553733 2018 04 27
Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma. Smestad, John; Hamidi, Oksana; Wang, Lin; Holte, Molly Nelson; Khazal, Fatimah Al; Erber, Luke; Chen, Yue; Maher 3rd, L James Oncotarget 29464059 2018 Jan 19
Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer. Hale, Vanessa L; Jeraldo, Patricio; Mundy, Michael; Yao, Janet; Keeney, Gary; Scott, Nancy; Cheek, E Heidi; Davidson, Jennifer; Greene, Megan; Martinez, Christine; Lehman, John; Pettry, Chandra; Reed, Erica; Lyke, Kelly; White, Bryan A; Diener, Christian; Resendis-Antonio, Osbaldo; Gransee, Jaime; Dutta, Tumpa; Petterson, Xuan-Mai; Boardman, Lisa; Larson, David; Nelson, Heidi; Chia, Nicholas Methods (San Diego, Calif.) 29704665 2018 Oct 01
A novel triple-tracer approach to assess postprandial protein turnover. Moran, Antoinette; Toffolo, Gianna; Schiavon, Michele; Vella, Adrian; Klaus, Katherine; Cobelli, Claudio; Nair, K Sreekumaran American journal of physiology. Endocrinology and metabolism 29870679 2018 10 01
Chromatin Succinylation Correlates with Active Gene Expression and Is Perturbed by Defective TCA Cycle Metabolism. Smestad, John; Erber, Luke; Chen, Yue; Maher 3rd, L James iScience 29888767 2018 Apr 27
Metabolomics and 16S rRNA sequencing of human colorectal cancers and adjacent mucosa. Loke, Mun Fai; Chua, Eng Guan; Gan, Han Ming; Thulasi, Kumar; Wanyiri, Jane W; Thevambiga, Iyadorai; Goh, Khean Lee; Wong, Won Fen; Vadivelu, Jamuna PloS one 30576312 2018
Granzyme A in Human Platelets Regulates the Synthesis of Proinflammatory Cytokines by Monocytes in Aging. Campbell, Robert A; Franks, Zechariah; Bhatnagar, Anish; Rowley, Jesse W; Manne, Bhanu K; Supiano, Mark A; Schwertz, Hansjorg; Weyrich, Andrew S; Rondina, Matthew T Journal of immunology (Baltimore, Md. : 1950) 29167233 2018 Jan 01
Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids. Schwertz, Hansjörg; Rowley, Jesse W; Schumann, Gerald G; Thorack, Ulrike; Campbell, Robert A; Manne, Bhanu Kanth; Zimmerman, Guy A; Weyrich, Andrew S; Rondina, Matthew T Arteriosclerosis, thrombosis, and vascular biology 29301786 2018 04
Restoration of short chain fatty acid and bile acid metabolism following fecal microbiota transplantation in patients with recurrent Clostridium difficile infection. Seekatz, Anna M; Theriot, Casey M; Rao, Krishna; Chang, Yu-Ming; Freeman, Alison E; Kao, John Y; Young, Vincent B Anaerobe 29654837 2018 Oct
Tandem Mass Spectrometry and Ion Mobility Reveals Structural Insight into Eicosanoid Product Ion Formation. Di Giovanni, James P; Barkley, Robert M; Jones, David N M; Hankin, Joseph A; Murphy, Robert C Journal of the American Society for Mass Spectrometry 29687419 2018 06
Metabolomics Reveals Aryl Hydrocarbon Receptor Activation Induces Liver and Mammary Gland Metabolic Dysfunction in Lactating Mice. Belton, Kerry R; Tian, Yuan; Zhang, Limin; Anitha, Mallappa; Smith, Philip B; Perdew, Gary H; Patterson, Andrew D Journal of proteome research 29521512 2018 04 06
An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies. Bilbao, Aivett; Gibbons, Bryson C; Slysz, Gordon W; Crowell, Kevin L; Monroe, Matthew E; Ibrahim, Yehia M; Smith, Richard D; Payne, Samuel H; Baker, Erin S International journal of mass spectrometry 29706793 2018 Apr
Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages. Krishnan, Smitha; Ding, Yufang; Saedi, Nima; Choi, Maria; Sridharan, Gautham V; Sherr, David H; Yarmush, Martin L; Alaniz, Robert C; Jayaraman, Arul; Lee, Kyongbum Cell reports 29694888 2018 04 24
Exosomal lipids for classifying early and late stage non-small cell lung cancer. Fan, Teresa W M; Zhang, Xiaofei; Wang, Chi; Yang, Ye; Kang, Woo-Young; Arnold, Susanne; Higashi, Richard M; Liu, Jinze; Lane, Andrew N Analytica chimica acta 30292300 2018 Dec 11
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism. Zarrinpar, Amir; Chaix, Amandine; Xu, Zhenjiang Z; Chang, Max W; Marotz, Clarisse A; Saghatelian, Alan; Knight, Rob; Panda, Satchidananda Nature communications 30030441 2018 07 20
Eosinophilic and Noneosinophilic Asthma. Carr, Tara F; Zeki, Amir A; Kraft, Monica American journal of respiratory and critical care medicine 28910134 2018 Jan 01
Metabolomics of tomato xylem sap during bacterial wilt reveals Ralstonia solanacearum produces abundant putrescine, a metabolite that accelerates wilt disease. Lowe-Power, Tiffany M; Hendrich, Connor G; von Roepenack-Lahaye, Edda; Li, Bin; Wu, Dousheng; Mitra, Raka; Dalsing, Beth L; Ricca, Patrizia; Naidoo, Jacinth; Cook, David; Jancewicz, Amy; Masson, Patrick; Thomma, Bart; Lahaye, Thomas; Michael, Anthony J; Allen, Caitilyn Environmental microbiology 29215193 2018 04
Male lifespan extension with 17-α estradiol is linked to a sex-specific metabolomic response modulated by gonadal hormones in mice. Garratt, Michael; Lagerborg, Kim A; Tsai, Yi-Miau; Galecki, Andrzej; Jain, Mohit; Miller, Richard A Aging cell 29806096 2018 08
Sebaceous gland abnormalities in fatty acyl CoA reductase 2 (Far2) null mice result in primary cicatricial alopecia. Sundberg, John P; Shen, Tong; Fiehn, Oliver; Rice, Robert H; Silva, Kathleen A; Kennedy, Victoria E; Gott, Nicholas E; Dionne, Louise A; Bechtold, Lesley S; Murray, Stephen A; Kuiper, Raoul; Pratt, C Herbert PloS one 30372477 2018
Generation and quality control of lipidomics data for the alzheimer's disease neuroimaging initiative cohort. Barupal, Dinesh Kumar; Fan, Sili; Wancewicz, Benjamin; Cajka, Tomas; Sa, Michael; Showalter, Megan R; Baillie, Rebecca; Tenenbaum, Jessica D; Louie, Gregory; Alzheimer’s Disease Neuroimaging Initiative; Alzheimer’s Disease Metabolomics Consortium; Kaddurah-Daouk, Rima; Fiehn, Oliver Scientific data 30457571 2018 11 20
Effect of endotoxin and alum adjuvant vaccine on peanut allergy. Johnson-Weaver, Brandi T; McRitchie, Susan; Mercier, Kelly A; Pathmasiri, Wimal; Sumner, Susan J; Chan, Cliburn; Germolec, Dori; Kulis, Michael; Burks, A Wesley; Staats, Herman F The Journal of allergy and clinical immunology 28927819 2018 Feb
Human microbiota, blood group antigens, and disease. Ewald, D Rose; Sumner, Susan C J Wiley interdisciplinary reviews. Systems biology and medicine 29316320 2018 05
Using Metabolomics to Investigate Biomarkers of Drug Addiction. Ghanbari, Reza; Sumner, Susan Trends in molecular medicine 29397321 2018 Feb
The effect of Ho3+ doping on 13C dynamic nuclear polarization at 5 T. Sirusi, Ali A; Suh, Eul Hyun; Kovacs, Zoltan; Merritt, Matthew E Physical chemistry chemical physics : PCCP 29242884 2018 Jan 03
l-Carnitine Inhibits Lipopolysaccharide-Induced Nitric Oxide Production of SIM-A9 Microglia Cells. Gill, Emily L; Raman, Shreya; Yost, Richard A; Garrett, Timothy J; Vedam-Mai, Vinata ACS chemical neuroscience 29370524 2018 May 16
In vivo hyperpolarization transfer in a clinical MRI scanner. von Morze, Cornelius; Reed, Galen D; Larson, Peder E; Mammoli, Daniele; Chen, Albert P; Tropp, James; Van Criekinge, Mark; Ohliger, Michael A; Kurhanewicz, John; Vigneron, Daniel B; Merritt, Matthew E Magnetic resonance in medicine 29488244 2018 Aug
Multiomics approach reveals metabolic changes in the heart at birth. Walejko, Jacquelyn M; Koelmel, Jeremy P; Garrett, Timothy J; Edison, Arthur S; Keller-Wood, Maureen American journal of physiology. Endocrinology and metabolism 30300011 2018 Dec 01
A joint analysis of metabolomic profiles associated with muscle mass and strength in Caucasian women. Zhao, Qi; Shen, Hui; Su, Kuan-Jui; Tian, Qing; Zhao, Lan-Juan; Qiu, Chuan; Garrett, Timothy J; Liu, Jiawang; Kakhniashvili, David; Deng, Hong-Wen Aging 30318485 2018 10 14
Increased Brain Glucose Uptake After 12 Weeks of Aerobic High-Intensity Interval Training in Young and Older Adults. Robinson, Matthew M; Lowe, Val J; Nair, K Sreekumaran The Journal of clinical endocrinology and metabolism 29077855 2018 Jan 01
Lower plasma choline levels are associated with sleepiness symptoms. Pak, Victoria M; Dai, Feng; Keenan, Brendan T; Gooneratne, Nalaka S; Pack, Allan I Sleep medicine 29530375 2018 04
Hyperglucagonemia Mitigates the Effect of Metformin on Glucose Production in Prediabetes. Konopka, Adam R; Esponda, Raul Ruiz; Robinson, Matthew M; Johnson, Matthew L; Carter, Rickey E; Schiavon, Michele; Cobelli, Claudio; Wondisford, Fredric E; Lanza, Ian R; Nair, K Sreekumaran Cell reports 29791861 2018 May 22
Amino acid and lipid associated plasma metabolomic patterns are related to healthspan indicators with ageing. Johnson, Lawrence C; Martens, Christopher R; Santos-Parker, Jessica R; Bassett, Candace J; Strahler, Talia R; Cruickshank-Quinn, Charmion; Reisdorph, Nichole; McQueen, Matthew B; Seals, Douglas R Clinical science (London, England : 1979) 29914938 2018 Aug 31
Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. Hale, Vanessa L; Jeraldo, Patricio; Chen, Jun; Mundy, Michael; Yao, Janet; Priya, Sambhawa; Keeney, Gary; Lyke, Kelly; Ridlon, Jason; White, Bryan A; French, Amy J; Thibodeau, Stephen N; Diener, Christian; Resendis-Antonio, Osbaldo; Gransee, Jaime; Dutta, Tumpa; Petterson, Xuan-Mai; Sung, Jaeyun; Blekhman, Ran; Boardman, Lisa; Larson, David; Nelson, Heidi; Chia, Nicholas Genome medicine 30376889 2018 10 31
Role of Selenof as a Gatekeeper of Secreted Disulfide-Rich Glycoproteins. Yim, Sun Hee; Everley, Robert A; Schildberg, Frank A; Lee, Sang-Goo; Orsi, Andrea; Barbati, Zachary R; Karatepe, Kutay; Fomenko, Dmitry E; Tsuji, Petra A; Luo, Hongbo R; Gygi, Steven P; Sitia, Roberto; Sharpe, Arlene H; Hatfield, Dolph L; Gladyshev, Vadim N Cell reports 29719252 2018 05 01
Acute loss of iron-sulfur clusters results in metabolic reprogramming and generation of lipid droplets in mammalian cells. Crooks, Daniel R; Maio, Nunziata; Lane, Andrew N; Jarnik, Michal; Higashi, Richard M; Haller, Ronald G; Yang, Ye; Fan, Teresa W-M; Linehan, W Marston; Rouault, Tracey A The Journal of biological chemistry 29523684 2018 05 25
Structural and Functional Analysis of the Gut Microbiome for Toxicologists. Nichols, Robert G; Cai, Jingwei; Murray, Iain A; Koo, Imhoi; Smith, Philip B; Perdew, Gary H; Patterson, Andrew D Current protocols in toxicology 30230220 2018 Nov
Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry. Kyle, Jennifer E; Aly, Noor; Zheng, Xueyun; Burnum-Johnson, Kristin E; Smith, Richard D; Baker, Erin S Bioanalysis 29494212 2018 Mar 01
The MPLEx Protocol for Multi-omic Analyses of Soil Samples. Nicora, Carrie D; Burnum-Johnson, Kristin E; Nakayasu, Ernesto S; Casey, Cameron P; White 3rd, Richard A; Roy Chowdhury, Taniya; Kyle, Jennifer E; Kim, Young-Mo; Smith, Richard D; Metz, Thomas O; Jansson, Janet K; Baker, Erin S Journal of visualized experiments : JoVE 29912205 2018 May 30
Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity. Cai, Jingwei; Nichols, Robert G; Koo, Imhoi; Kalikow, Zachary A; Zhang, Limin; Tian, Yuan; Zhang, Jingtao; Smith, Philip B; Patterson, Andrew D mSystems 30417115 2018 Nov-Dec
Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches. Zheng, Xueyun; Smith, Richard D; Baker, Erin S Current opinion in chemical biology 29223060 2018 Feb
Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations. Nagy, Gabe; Chouinard, Christopher D; Attah, Isaac K; Webb, Ian K; Garimella, Sandilya V B; Ibrahim, Yehia M; Baker, Erin S; Smith, Richard D Electrophoresis 30168603 2018 12
Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites. Zheng, Xueyun; Dupuis, Kevin T; Aly, Noor A; Zhou, Yuxuan; Smith, Francesca B; Tang, Keqi; Smith, Richard D; Baker, Erin S Analytica chimica acta 30292301 2018 Dec 11
Distinct Lipidomic Landscapes Associated with Clinical Stages of Urothelial Cancer of the Bladder. Piyarathna, Danthasinghe Waduge Badrajee; Rajendiran, Thekkelnaycke M; Putluri, Vasanta; Vantaku, Venkatrao; Soni, Tanu; von Rundstedt, Friedrich-Carl; Donepudi, Sri Ramya; Jin, Feng; Maity, Suman; Ambati, Chandrashekar R; Dong, Jianrong; Gödde, Daniel; Roth, Stephan; Störkel, Stephan; Degener, Stephan; Michailidis, George; Lerner, Seth P; Pennathur, Subramaniam; Lotan, Yair; Coarfa, Cristian; Sreekumar, Arun; Putluri, Nagireddy European urology focus 28753886 2018 12
Mutant p53R270H drives altered metabolism and increased invasion in pancreatic ductal adenocarcinoma. Schofield, Heather K; Zeller, Jörg; Espinoza, Carlos; Halbrook, Christopher J; Del Vecchio, Annachiara; Magnuson, Brian; Fabo, Tania; Cali Daylan, Ayse Ece; Kovalenko, Ilya; Lee, Ho-Joon; Yan, Wei; Feng, Ying; Karim, Saadia A; Kremer, Daniel M; Kumar-Sinha, Chandan; Lyssiotis, Costas A; Ljungman, Mats; Morton, Jennifer P; Galbán, Stefanie; Fearon, Eric R; Pasca di Magliano, Marina JCI insight 29367463 2018 01 25
Atypical Antipsychotic Exposure May Not Differentiate Metabolic Phenotypes of Patients with Schizophrenia. Ward, Kristen M; Yeoman, Larisa; McHugh, Cora; Kraal, A Zarina; Flowers, Stephanie A; Rothberg, Amy E; Karnovsky, Alla; Das, Arun K; Ellingrod, Vicki L; Stringer, Kathleen A Pharmacotherapy 29722909 2018 06
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Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics. Lai, Zijuan; Tsugawa, Hiroshi; Wohlgemuth, Gert; Mehta, Sajjan; Mueller, Matthew; Zheng, Yuxuan; Ogiwara, Atsushi; Meissen, John; Showalter, Megan; Takeuchi, Kohei; Kind, Tobias; Beal, Peter; Arita, Masanori; Fiehn, Oliver Nature methods 29176591 2018 01
Celecoxib Does Not Protect against Fibrosis and Inflammation in a Carbon Tetrachloride-Induced Model of Liver Injury. Harris, Todd R; Kodani, Sean; Rand, Amy A; Yang, Jun; Imai, Denise M; Hwang, Sung Hee; Hammock, Bruce D Molecular pharmacology 29844231 2018 08
Effects of atopic dermatitis and gender on sebum lipid mediator and fatty acid profiles. Agrawal, Karan; Hassoun, Lauren A; Foolad, Negar; Borkowski, Kamil; Pedersen, Theresa L; Sivamani, Raja K; Newman, John W Prostaglandins, leukotrienes, and essential fatty acids 29886894 2018 07
Sex-associated differences in baseline urinary metabolites of healthy adults. Fan, Sili; Yeon, Austin; Shahid, Muhammad; Anger, Jennifer T; Eilber, Karyn S; Fiehn, Oliver; Kim, Jayoung Scientific reports 30089834 2018 08 08
Integrated proteomic and phosphoproteomic analyses of cisplatin-sensitive and resistant bladder cancer cells reveal CDK2 network as a key therapeutic target. Jung, Jae Hun; You, Sungyong; Oh, Jae Won; Yoon, Junhee; Yeon, Austin; Shahid, Muhammad; Cho, Eunho; Sairam, Vikram; Park, Taeeun D; Kim, Kwang Pyo; Kim, Jayoung Cancer letters 30145203 2018 11 28
Centromere protein F (CENPF), a microtubule binding protein, modulates cancer metabolism by regulating pyruvate kinase M2 phosphorylation signaling. Shahid, Muhammad; Lee, Min Young; Piplani, Honit; Andres, Allen M; Zhou, Bo; Yeon, Austin; Kim, Minjung; Kim, Hyung L; Kim, Jayoung Cell cycle (Georgetown, Tex.) 30526248 2018
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A novel inhibitor of pyruvate dehydrogenase kinase stimulates myocardial carbohydrate oxidation in diet-induced obesity. Wu, Cheng-Yang; Satapati, Santhosh; Gui, Wenjun; Wynn, R Max; Sharma, Gaurav; Lou, Mingliang; Qi, Xiangbing; Burgess, Shawn C; Malloy, Craig; Khemtong, Chalermchai; Sherry, A Dean; Chuang, David T; Merritt, Matthew E The Journal of biological chemistry 29739849 2018 06 22
Cation-Dependent Conformations in 25-Hydroxyvitamin D3-Cation Adducts Measured by Ion Mobility-Mass Spectrometry and Theoretical Modeling. Chouinard, Christopher D; Cruzeiro, Vinicius Wilian D; Kemperman, Robin H J; Oranzi, Nicholas R; Roitberg, Adrian E; Yost, Richard A International journal of mass spectrometry 30034270 2018 Sep
Gut microbiota and serum metabolite differences in African Americans and White Americans with high blood pressure. Walejko, Jacquelyn M; Kim, Seungbum; Goel, Ruby; Handberg, Eileen M; Richards, Elaine M; Pepine, Carl J; Raizada, Mohan K International journal of cardiology 30049487 2018 Nov 15
Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer. Zaytseva, Yekaterina Y; Rychahou, Piotr G; Le, Anh-Thu; Scott, Timothy L; Flight, Robert M; Kim, Ji Tae; Harris, Jennifer; Liu, Jinpeng; Wang, Chi; Morris, Andrew J; Sivakumaran, Theru A; Fan, Teresa; Moseley, Hunter; Gao, Tianyan; Lee, Eun Y; Weiss, Heidi L; Heuer, Timothy S; Kemble, George; Evers, Mark Oncotarget 29872506 2018 May 15
First and second trimester urinary metabolic profiles and fetal growth restriction: an exploratory nested case-control study within the infant development and environment study. Luthra, Gauri; Vuckovic, Ivan; Bangdiwala, A; Gray, H; Redmon, J B; Barrett, E S; Sathyanarayana, S; Nguyen, R H N; Swan, S H; Zhang, S; Dzeja, P; Macura, S I; Nair, K S BMC pregnancy and childbirth 29422013 2018 02 08
Interferon Gamma Induces Reversible Metabolic Reprogramming of M1 Macrophages to Sustain Cell Viability and Pro-Inflammatory Activity. Wang, Feilong; Zhang, Song; Jeon, Ryounghoon; Vuckovic, Ivan; Jiang, Xintong; Lerman, Amir; Folmes, Clifford D; Dzeja, Petras D; Herrmann, Joerg EBioMedicine 29463472 2018 Apr
Blueberry Supplementation Influences the Gut Microbiota, Inflammation, and Insulin Resistance in High-Fat-Diet-Fed Rats. Lee, Sunhye; Keirsey, Katherine I; Kirkland, Rebecca; Grunewald, Zachary I; Fischer, Joan G; de La Serre, Claire B The Journal of nutrition 29490092 2018 Feb 01
StAR-related lipid transfer domain 11 (STARD11)-mediated ceramide transport mediates extracellular vesicle biogenesis. Fukushima, Masanori; Dasgupta, Debanjali; Mauer, Amy S; Kakazu, Eiji; Nakao, Kazuhiko; Malhi, Harmeet The Journal of biological chemistry 30139741 2018 09 28
Altered mitochondrial function in insulin-deficient and insulin-resistant states. Ruegsegger, Gregory N; Creo, Ana L; Cortes, Tiffany M; Dasari, Surendra; Nair, K Sreekumaran The Journal of clinical investigation 30168804 2018 Aug 31
Platelet-derived TLT-1 is a prognostic indicator in ALI/ARDS and prevents tissue damage in the lungs in a mouse model. Morales-Ortíz, Jessica; Deal, Victoria; Reyes, Fiorella; Maldonado-Martínez, Gerónimo; Ledesma, Nahomy; Staback, Franklin; Croft, Cheyanne; Pacheco, Amanda; Ortiz-Zuazaga, Humberto; Yost, C Christian; Rowley, Jesse W; Madera, Bismark; John, Alex St; Chen, Junmei; Lopez, Jose; Rondina, Matthew T; Hunter, Robert; Gibson, Angelia; Washington, A Valance Blood 30282800 2018 12 06
Lipid metabolism and lipophagy in cancer. Maan, Meenu; Peters, Jeffrey M; Dutta, Mainak; Patterson, Andrew D Biochemical and biophysical research communications 29438712 2018 10 07
Online Ozonolysis Combined with Ion Mobility-Mass Spectrometry Provides a New Platform for Lipid Isomer Analyses. Poad, Berwyck L J; Zheng, Xueyun; Mitchell, Todd W; Smith, Richard D; Baker, Erin S; Blanksby, Stephen J Analytical chemistry 29220163 2018 Jan 16
Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations. Chouinard, Christopher D; Nagy, Gabe; Webb, Ian K; Garimella, Sandilya V B; Baker, Erin S; Ibrahim, Yehia M; Smith, Richard D Analytical chemistry 30102518 2018 09 18
Targeted Isolation of Neuroprotective Dicoumaroyl Neolignans and Lignans from Sageretia theezans Using in Silico Molecular Network Annotation Propagation-Based Dereplication. Kang, Kyo Bin; Park, Eun Jin; da Silva, Ricardo R; Kim, Hyun Woo; Dorrestein, Pieter C; Sung, Sang Hyun Journal of natural products 30106290 2018 08 24
Probing the application range and selectivity of a differential mobility spectrometry-mass spectrometry platform for metabolomics. Wernisch, Stefanie; Afshinnia, Farsad; Rajendiran, Thekkelnaycke; Pennathur, Subramaniam Analytical and bioanalytical chemistry 29532192 2018 May
Associations of the plasma lipidome with mortality in the acute respiratory distress syndrome: a longitudinal cohort study. Maile, Michael D; Standiford, Theodore J; Engoren, Milo C; Stringer, Kathleen A; Jewell, Elizabeth S; Rajendiran, Thekkelnaycke M; Soni, Tanu; Burant, Charles F Respiratory research 29636049 2018 04 10
Menin regulates the serine biosynthetic pathway in Ewing sarcoma. Svoboda, Laurie K; Teh, Selina Shiqing K; Sud, Sudha; Kerk, Samuel; Zebolsky, Aaron; Treichel, Sydney; Thomas, Dafydd; Halbrook, Christopher J; Lee, Ho-Joon; Kremer, Daniel; Zhang, Li; Klossowski, Szymon; Bankhead, Armand R; Magnuson, Brian; Ljungman, Mats; Cierpicki, Tomasz; Grembecka, Jolanta; Lyssiotis, Costas A; Lawlor, Elizabeth R The Journal of pathology 29672864 2018 07
GLP-2 receptor signaling controls circulating bile acid levels but not glucose homeostasis in Gcgr-/- mice and is dispensable for the metabolic benefits ensuing after vertical sleeve gastrectomy. Patel, Anita; Yusta, Bernardo; Matthews, Dianne; Charron, Maureen J; Seeley, Randy J; Drucker, Daniel J Molecular metabolism 29937214 2018 Oct
Gut Microbial Product Predicts Cardiovascular Risk in Chronic Kidney Disease Patients. Jadoon, Adil; Mathew, Anna V; Byun, Jaeman; Gadegbeku, Crystal A; Gipson, Debbie S; Afshinnia, Farsad; Pennathur, Subramaniam; for the Michigan Kidney Translational Core CPROBE Investigator Group American journal of nephrology 30326477 2018
Mass spectral fragmentation of trimethylsilylated small molecules. Lai, Zijuan; Fiehn, Oliver Mass spectrometry reviews 27580014 2018 May
Abnormal lipoprotein oxylipins in metabolic syndrome and partial correction by omega-3 fatty acids. Shearer, Gregory C; Borkowski, Kamil; Puumala, Susan L; Harris, William S; Pedersen, Theresa L; Newman, John W Prostaglandins, leukotrienes, and essential fatty acids 29413356 2018 Jan
Celecoxib use and circulating oxylipins in a colon polyp prevention trial. Martinez, Jessica A; Yang, Jun; Wertheim, Betsy C; Roe, Denise J; Schriewer, Alexander; Lance, Peter; Alberts, David S; Hammock, Bruce D; Thompson, Patricia A PloS one 29698447 2018
Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. Blaženović, Ivana; Kind, Tobias; Ji, Jian; Fiehn, Oliver Metabolites 29748461 2018 May 10
Era of the Fourth Industrial Revolution and the Urologists' Journey to Navigating Big Omics Data. Kim, Jayoung International neurourology journal 30068072 2018 Jul
Rewiring of cisplatin-resistant bladder cancer cells through epigenetic regulation of genes involved in amino acid metabolism. Yeon, Austin; You, Sungyong; Kim, Minhyung; Gupta, Amit; Park, Myung Hee; Weisenberger, Daniel J; Liang, Gangning; Kim, Jayoung Theranostics 30214636 2018
Skeletal muscle overexpression of nicotinamide phosphoribosyl transferase in mice coupled with voluntary exercise augments exercise endurance. Costford, Sheila R; Brouwers, Bram; Hopf, Meghan E; Sparks, Lauren M; Dispagna, Mauro; Gomes, Ana P; Cornnell, Heather H; Petucci, Chris; Phelan, Peter; Xie, Hui; Yi, Fanchao; Walter, Glenn A; Osborne, Timothy F; Sinclair, David A; Mynatt, Randall L; Ayala, Julio E; Gardell, Stephen J; Smith, Steven R Molecular metabolism 29146412 2018 Jan
Probing cardiac metabolism by hyperpolarized 13C MR using an exclusively endogenous substrate mixture and photo-induced nonpersistent radicals. Bastiaansen, Jessica A M; Yoshihara, Hikari A I; Capozzi, Andrea; Schwitter, Juerg; Gruetter, Rolf; Merritt, Matthew E; Comment, Arnaud Magnetic resonance in medicine 29411415 2018 05
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Glutathione de novo synthesis but not recycling process coordinates with glutamine catabolism to control redox homeostasis and directs murine T cell differentiation. Lian, Gaojian; Gnanaprakasam, Jn Rashida; Wang, Tingting; Wu, Ruohan; Chen, Xuyong; Liu, Lingling; Shen, Yuqing; Yang, Mao; Yang, Jun; Chen, Ying; Vasiliou, Vasilis; Cassel, Teresa A; Green, Douglas R; Liu, Yusen; Fan, Teresa Wm; Wang, Ruoning eLife 30198844 2018 09 10
Ribosomes in platelets protect the messenger. Rowley, Jesse W; Weyrich, Andrew S Blood 28450575 2017 04 27
Platelet microparticles infiltrating solid tumors transfer miRNAs that suppress tumor growth. Michael, James V; Wurtzel, Jeremy G T; Mao, Guang Fen; Rao, A Koneti; Kolpakov, Mikhail A; Sabri, Abdelkarim; Hoffman, Nicholas E; Rajan, Sudarsan; Tomar, Dhanendra; Madesh, Muniswamy; Nieman, Marvin T; Yu, Johnny; Edelstein, Leonard C; Rowley, Jesse W; Weyrich, Andrew S; Goldfinger, Lawrence E Blood 28500171 2017 08 03
Superoxide Dismutase 2 is dispensable for platelet function. Fidler, Trevor P; Rowley, Jesse W; Araujo, Claudia; Boudreau, Luc H; Marti, Alex; Souvenir, Rhonda; Dale, Kali; Boilard, Eric; Weyrich, Andrew S; Abel, E Dale Thrombosis and haemostasis 28771279 2017 Oct 05
Inhibition of spore germination, growth, and toxin activity of clinically relevant C. difficile strains by gut microbiota derived secondary bile acids. Thanissery, Rajani; Winston, Jenessa A; Theriot, Casey M Anaerobe 28279860 2017 Jun
Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses. Zheng, Xueyun; Zhang, Xing; Schocker, Nathaniel S; Renslow, Ryan S; Orton, Daniel J; Khamsi, Jamal; Ashmus, Roger A; Almeida, Igor C; Tang, Keqi; Costello, Catherine E; Smith, Richard D; Michael, Katja; Baker, Erin S Analytical and bioanalytical chemistry 27604268 2017 Jan
Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses. Zheng, Xueyun; Wojcik, Roza; Zhang, Xing; Ibrahim, Yehia M; Burnum-Johnson, Kristin E; Orton, Daniel J; Monroe, Matthew E; Moore, Ronald J; Smith, Richard D; Baker, Erin S Annual review of analytical chemistry (Palo Alto, Calif.) 28301728 2017 Jun 12
Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging. Burnum-Johnson, Kristin E; Baker, Erin S; Metz, Thomas O Placenta 28392013 2017 Dec
NMR-based Stable Isotope Resolved Metabolomics in systems biochemistry. Lane, Andrew N; Fan, Teresa W-M Archives of biochemistry and biophysics 28263717 2017 Aug 15
An Intestinal Farnesoid X Receptor-Ceramide Signaling Axis Modulates Hepatic Gluconeogenesis in Mice. Xie, Cen; Jiang, Changtao; Shi, Jingmin; Gao, Xiaoxia; Sun, Dongxue; Sun, Lulu; Wang, Ting; Takahashi, Shogo; Anitha, Mallappa; Krausz, Kristopher W; Patterson, Andrew D; Gonzalez, Frank J Diabetes 28223344 2017 03
Activation of intestinal hypoxia-inducible factor 2α during obesity contributes to hepatic steatosis. Xie, Cen; Yagai, Tomoki; Luo, Yuhong; Liang, Xianyi; Chen, Tao; Wang, Qiong; Sun, Dongxue; Zhao, Jie; Ramakrishnan, Sadeesh K; Sun, Lulu; Jiang, Chunmei; Xue, Xiang; Tian, Yuan; Krausz, Kristopher W; Patterson, Andrew D; Shah, Yatrik M; Wu, Yue; Jiang, Changtao; Gonzalez, Frank J Nature medicine 29035368 2017 Nov
Quantitative profiling of carbonyl metabolites directly in crude biological extracts using chemoselective tagging and nanoESI-FTMS. Deng, Pan; Higashi, Richard M; Lane, Andrew N; Bruntz, Ronald C; Sun, Ramon C; Ramakrishnam Raju, Mandapati V; Nantz, Michael H; Qi, Zhen; Fan, Teresa W-M The Analyst 29192912 2017 12 18
Proteomics and metabolomics in ageing research: from biomarkers to systems biology. Hoffman, Jessica M; Lyu, Yang; Pletcher, Scott D; Promislow, Daniel E L Essays in biochemistry 28698311 2017 07 15
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung. Garg, Neha; Wang, Mingxun; Hyde, Embriette; da Silva, Ricardo R; Melnik, Alexey V; Protsyuk, Ivan; Bouslimani, Amina; Lim, Yan Wei; Wong, Richard; Humphrey, Greg; Ackermann, Gail; Spivey, Timothy; Brouha, Sharon S; Bandeira, Nuno; Lin, Grace Y; Rohwer, Forest; Conrad, Douglas J; Alexandrov, Theodore; Knight, Rob; Dorrestein, Pieter C Cell host & microbe 29056429 2017 Nov 08
Comparison of statistical methods for detection of serum lipid biomarkers for mesothelioma and asbestos exposure. Xu, Rengyi; Mesaros, Clementina; Weng, Liwei; Snyder, Nathaniel W; Vachani, Anil; Blair, Ian A; Hwang, Wei-Ting Biomarkers in medicine 28534416 2017 Jul
Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses. Mach, Núria; Ramayo-Caldas, Yuliaxis; Clark, Allison; Moroldo, Marco; Robert, Céline; Barrey, Eric; López, Jesús Maria; Le Moyec, Laurence BMC genomics 28212624 2017 Feb 17
Discovering and linking public omics data sets using the Omics Discovery Index. Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; Hermjakob, Henning Nature biotechnology 28486464 2017 05 09
Bipolar disorder moderates associations between linoleic acid and markers of inflammation. Chang, Ya-Wen; Assari, Shervin; Prossin, Alan R; Stertz, Laura; McInnis, Melvin G; Evans, Simon J Journal of psychiatric research 27821270 2017 Feb
2-Hydroxyglutarate produced by neomorphic IDH mutations suppresses homologous recombination and induces PARP inhibitor sensitivity. Sulkowski, Parker L; Corso, Christopher D; Robinson, Nathaniel D; Scanlon, Susan E; Purshouse, Karin R; Bai, Hanwen; Liu, Yanfeng; Sundaram, Ranjini K; Hegan, Denise C; Fons, Nathan R; Breuer, Gregory A; Song, Yuanbin; Mishra-Gorur, Ketu; De Feyter, Henk M; de Graaf, Robin A; Surovtseva, Yulia V; Kachman, Maureen; Halene, Stephanie; Günel, Murat; Glazer, Peter M; Bindra, Ranjit S Science translational medicine 28148839 2017 02 01
Head and Neck Squamous Cell Carcinoma Metabolism Draws on Glutaminolysis, and Stemness Is Specifically Regulated by Glutaminolysis via Aldehyde Dehydrogenase. Kamarajan, Pachiyappan; Rajendiran, Thekkelnaycke M; Kinchen, Jason; Bermúdez, Mercedes; Danciu, Theodora; Kapila, Yvonne L Journal of proteome research 28168879 2017 03 03
Dimethyl Itaconate Is Not Metabolized into Itaconate Intracellularly. ElAzzouny, Mahmoud; Tom, Christopher T M B; Evans, Charles R; Olson, Lori L; Tanga, Mary J; Gallagher, Katherine A; Martin, Brent R; Burant, Charles F The Journal of biological chemistry 28188288 2017 03 24
Bed morphological features associated with an optimal slurry concentration for reproducible preparation of efficient capillary ultrahigh pressure liquid chromatography columns. Reising, Arved E; Godinho, Justin M; Jorgenson, James W; Tallarek, Ulrich Journal of chromatography. A 28511930 2017 Jun 30
Metabolomic Determinants of Metabolic Risk in Mexican Adolescents. Perng, Wei; Hector, Emily C; Song, Peter X K; Tellez Rojo, Martha Maria; Raskind, Sasha; Kachman, Maureen; Cantoral, Alejandra; Burant, Charles F; Peterson, Karen E Obesity (Silver Spring, Md.) 28758362 2017 Sep
Evaluation of intensity drift correction strategies using MetaboDrift, a normalization tool for multi-batch metabolomics data. Thonusin, Chanisa; IglayReger, Heidi B; Soni, Tanu; Rothberg, Amy E; Burant, Charles F; Evans, Charles R Journal of chromatography. A 28927937 2017 Nov 10
Cytochrome P450 monooxygenase lipid metabolites are significant second messengers in the resolution of choroidal neovascularization. Hasegawa, Eiichi; Inafuku, Saori; Mulki, Lama; Okunuki, Yoko; Yanai, Ryoji; Smith, Kaylee E; Kim, Clifford B; Klokman, Garrett; Bielenberg, Diane R; Puli, Narender; Falck, John R; Husain, Deeba; Miller, Joan W; Edin, Matthew L; Zeldin, Darryl C; Lee, Kin Sing Stephen; Hammock, Bruce D; Schunck, Wolf-Hagen; Connor, Kip M Proceedings of the National Academy of Sciences of the United States of America 28827330 2017 09 05
Metabolites as biomarkers of adverse reactions following vaccination: A pilot study using nuclear magnetic resonance metabolomics. McClenathan, Bruce M; Stewart, Delisha A; Spooner, Christina E; Pathmasiri, Wimal W; Burgess, Jason P; McRitchie, Susan L; Choi, Y Sammy; Sumner, Susan C J Vaccine 28169076 2017 Mar 01
Metabolomics reveal physiological changes in mayfly larvae (Neocloeon triangulifer) at ecological upper thermal limits. Chou, Hsuan; Pathmasiri, Wimal; Deese-Spruill, Jocelin; Sumner, Susan; Buchwalter, David B Journal of insect physiology 28733240 2017 Aug
Considerations when choosing a genetic model organism for metabolomics studies. Reed, Laura K; Baer, Charles F; Edison, Arthur S Current opinion in chemical biology 28025166 2017 Feb
A comprehensive analysis of myocardial substrate preference emphasizes the need for a synchronized fluxomic/metabolomic research design. Ragavan, Mukundan; Kirpich, Alexander; Fu, Xiaorong; Burgess, Shawn C; McIntyre, Lauren M; Merritt, Matthew E American journal of physiology. Heart and circulatory physiology 28411229 2017 Jun 01
Staphylococcus aureus nitric oxide synthase (saNOS) modulates aerobic respiratory metabolism and cell physiology. Mogen, Austin B; Carroll, Ronan K; James, Kimberly L; Lima, Genevy; Silva, Dona; Culver, Jeffrey A; Petucci, Christopher; Shaw, Lindsey N; Rice, Kelly C Molecular microbiology 28431199 2017 Jul
UHPLC-Q-Orbitrap-HRMS-based global metabolomics reveal metabolome modifications in plasma of young women after cranberry juice consumption. Liu, Haiyan; Garrett, Timothy J; Su, Zhihua; Khoo, Christina; Gu, Liwei The Journal of nutritional biochemistry 28433923 2017 07
Accurate Identification of Unknown and Known Metabolic Mixture Components by Combining 3D NMR with Fourier Transform Ion Cyclotron Resonance Tandem Mass Spectrometry. Wang, Cheng; He, Lidong; Li, Da-Wei; Bruschweiler-Li, Lei; Marshall, Alan G; Brüschweiler, Rafael Journal of proteome research 28795575 2017 Oct 06
Comparison of global metabolite extraction strategies for soybeans using UHPLC-HRMS. Mahmud, Iqbal; Sternberg, Sandi; Williams, Michael; Garrett, Timothy J Analytical and bioanalytical chemistry 28844081 2017 Oct
The NQO1 bioactivatable drug, β-lapachone, alters the redox state of NQO1+ pancreatic cancer cells, causing perturbation in central carbon metabolism. Silvers, Molly A; Deja, Stanislaw; Singh, Naveen; Egnatchik, Robert A; Sudderth, Jessica; Luo, Xiuquan; Beg, Muhammad S; Burgess, Shawn C; DeBerardinis, Ralph J; Boothman, David A; Merritt, Matthew E The Journal of biological chemistry 28916726 2017 11 03
Portable FAIMS: Applications and Future Perspectives. Costanzo, Michael T; Boock, Jared J; Kemperman, Robin H J; Wei, Michael S; Beekman, Christopher R; Yost, Richard A International journal of mass spectrometry 29335669 2017 11
Perspectives and expectations in structural bioinformatics of metalloproteins. Yao, Sen; Flight, Robert M; Rouchka, Eric C; Moseley, Hunter N B Proteins 28168746 2017 May
Noninvasive liquid diet delivery of stable isotopes into mouse models for deep metabolic network tracing. Sun, Ramon C; Fan, Teresa W-M; Deng, Pan; Higashi, Richard M; Lane, Andrew N; Le, Anh-Thu; Scott, Timothy L; Sun, Qiushi; Warmoes, Marc O; Yang, Ye Nature communications 29158483 2017 Nov 21
Plasma metabolomics in adults with cystic fibrosis during a pulmonary exacerbation: A pilot randomized study of high-dose vitamin D3 administration. Alvarez, Jessica A; Chong, Elizabeth Y; Walker, Douglas I; Chandler, Joshua D; Michalski, Ellen S; Grossmann, Ruth E; Uppal, Karan; Li, Shuzhao; Frediani, Jennifer K; Tirouvanziam, Rabindra; Tran, ViLinh T; Tangpricha, Vin; Jones, Dean P; Ziegler, Thomas R Metabolism: clinical and experimental 28403943 2017 May
Addressing metabolic heterogeneity in clear cell renal cell carcinoma with quantitative Dixon MRI. Zhang, Yue; Udayakumar, Durga; Cai, Ling; Hu, Zeping; Kapur, Payal; Kho, Eun-Young; Pavía-Jiménez, Andrea; Fulkerson, Michael; de Leon, Alberto Diaz; Yuan, Qing; Dimitrov, Ivan E; Yokoo, Takeshi; Ye, Jin; Mitsche, Matthew A; Kim, Hyeonwoo; McDonald, Jeffrey G; Xi, Yin; Madhuranthakam, Ananth J; Dwivedi, Durgesh K; Lenkinski, Robert E; Cadeddu, Jeffrey A; Margulis, Vitaly; Brugarolas, James; DeBerardinis, Ralph J; Pedrosa, Ivan JCI insight 28768909 2017 Aug 03
New-generation mass spectrometry expands the toolbox of cell and developmental biology. Lombard-Banek, Camille; Portero, Erika P; Onjiko, Rosemary M; Nemes, Peter Genesis (New York, N.Y. : 2000) 28095647 2017 Jan
Metabolic Comparison of Dorsal versus Ventral Cells Directly in the Live 8-cell Frog Embryo by Microprobe Single-cell CE-ESI-MS. Onjiko, Rosemary M; Plotnick, David O; Moody, Sally A; Nemes, Peter Analytical methods : advancing methods and applications 29062391 2017 Sep 14
Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data. Basu, Sumanta; Duren, William; Evans, Charles R; Burant, Charles F; Michailidis, George; Karnovsky, Alla Bioinformatics (Oxford, England) 28137712 2017 May 15
Differences in testosterone and its precursors by sex of the offspring in meconium. Frey, Alexander J; Park, Bo Y; Schriver, Emily R; Feldman, Daniel R; Parry, Samuel; Croen, Lisa A; Fallin, Daniele M; Hertz-Picciotto, Irva; Newschaffer, Craig J; Snyder, Nathaniel W The Journal of steroid biochemistry and molecular biology 27871978 2017 Mar
Tandem Mass Spectrometry in Combination with Product Ion Mobility for the Identification of Phospholipids. Berry, Karin A Zemski; Barkley, Robert M; Berry, Joseph J; Hankin, Joseph A; Hoyes, Emmy; Brown, Jeffery M; Murphy, Robert C Analytical chemistry 27958700 2017 Jan 03
Systems-Level Annotation of a Metabolomics Data Set Reduces 25 000 Features to Fewer than 1000 Unique Metabolites. Mahieu, Nathaniel G; Patti, Gary J Analytical chemistry 28914531 2017 Oct 03
Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota. Li, Guolin; Xie, Cen; Lu, Siyu; Nichols, Robert G; Tian, Yuan; Li, Licen; Patel, Daxeshkumar; Ma, Yinyan; Brocker, Chad N; Yan, Tingting; Krausz, Kristopher W; Xiang, Rong; Gavrilova, Oksana; Patterson, Andrew D; Gonzalez, Frank J Cell metabolism 28918936 2017 Oct 03
Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations. Wojcik, Roza; Webb, Ian K; Deng, Liulin; Garimella, Sandilya V B; Prost, Spencer A; Ibrahim, Yehia M; Baker, Erin S; Smith, Richard D International journal of molecular sciences 28106768 2017 Jan 18
Coenzyme A thioester formation of 11- and 15-oxo-eicosatetraenoic acid. Mesaros, Clementina; Arroyo, Alejandro D; Blair, Ian A; Snyder, Nathaniel W Prostaglandins & other lipid mediators 28238887 2017 May
Metabolic tracing analysis reveals substrate-specific metabolic deficits in platelet storage lesion. Sims, Carrie; Salliant, Noelle; Worth, Andrew J; Parry, Robert; Mesaros, Clementina; Blair, Ian A; Snyder, Nathaniel W Transfusion 28836286 2017 11
Biologically Consistent Annotation of Metabolomics Data. Alden, Nicholas; Krishnan, Smitha; Porokhin, Vladimir; Raju, Ravali; McElearney, Kyle; Gilbert, Alan; Lee, Kyongbum Analytical chemistry 29156137 2017 Dec 19
Glioblastoma Therapy Can Be Augmented by Targeting IDH1-Mediated NADPH Biosynthesis. Wahl, Daniel R; Dresser, Joseph; Wilder-Romans, Kari; Parsels, Joshua D; Zhao, Shuang G; Davis, Mary; Zhao, Lili; Kachman, Maureen; Wernisch, Stefanie; Burant, Charles F; Morgan, Meredith A; Feng, Felix Y; Speers, Corey; Lyssiotis, Costas A; Lawrence, Theodore S Cancer research 27923831 2017 02 15
The importance of accurately correcting for the natural abundance of stable isotopes. Midani, Firas S; Wynn, Michelle L; Schnell, Santiago Analytical biochemistry 27989585 2017 Mar 01
Anaerobic Bacterial Fermentation Products Increase Tuberculosis Risk in Antiretroviral-Drug-Treated HIV Patients. Segal, Leopoldo N; Clemente, Jose C; Li, Yonghua; Ruan, Chunhai; Cao, Jane; Danckers, Mauricio; Morris, Alison; Tapyrik, Sarah; Wu, Benjamin G; Diaz, Philip; Calligaro, Gregory; Dawson, Rodney; van Zyl-Smit, Richard N; Dheda, Keertan; Rom, William N; Weiden, Michael D Cell host & microbe 28366509 2017 Apr 12
Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress. Jin, Meiyan; Fuller, Gregory G; Han, Ting; Yao, Yao; Alessi, Amelia F; Freeberg, Mallory A; Roach, Nathan P; Moresco, James J; Karnovsky, Alla; Baba, Misuzu; Yates 3rd, John R; Gitler, Aaron D; Inoki, Ken; Klionsky, Daniel J; Kim, John K Cell reports 28746874 2017 Jul 25
Sweat lipid mediator profiling: a noninvasive approach for cutaneous research. Agrawal, Karan; Hassoun, Lauren A; Foolad, Negar; Pedersen, Theresa L; Sivamani, Raja K; Newman, John W Journal of lipid research 27875258 2017 01
Lipidomic Analysis of Oxidized Fatty Acids in Plant and Algae Oils. Richardson, Christine E; Hennebelle, Marie; Otoki, Yurika; Zamora, Daisy; Yang, Jun; Hammock, Bruce D; Taha, Ameer Y Journal of agricultural and food chemistry 28157307 2017 Mar 08
Epimetabolites: discovering metabolism beyond building and burning. Showalter, Megan R; Cajka, Tomas; Fiehn, Oliver Current opinion in chemical biology 28213207 2017 02
Altered soluble epoxide hydrolase-derived oxylipins in patients with seasonal major depression: An exploratory study. Hennebelle, Marie; Otoki, Yurika; Yang, Jun; Hammock, Bruce D; Levitt, Anthony J; Taha, Ameer Y; Swardfager, Walter Psychiatry research 28259037 2017 Jun
Pharmacological inhibition of soluble epoxide hydrolase or genetic deletion reduces diclofenac-induced gastric ulcers. Goswami, Sumanta Kumar; Rand, Amelia Ann; Wan, Debin; Yang, Jun; Inceoglu, Bora; Thomas, Melany; Morisseau, Christophe; Yang, Guang-Yu; Hammock, Bruce D Life sciences 28522175 2017 Jul 01
Draft Genome Sequences of Salmonella enterica Serovar Typhimurium LT2 with Deleted Chitinases That Are Emerging Virulence Factors. Arabyan, Narine; Huang, Bihua C; Weimer, Bart C Genome announcements 28774970 2017 Aug 03
Postprandial effect to decrease soluble epoxide hydrolase activity: roles of insulin and gut microbiota. Yang, Jun; Oh, Young Taek; Wan, Debin; Watanabe, Richard M; Hammock, Bruce D; Youn, Jang H The Journal of nutritional biochemistry 28863368 2017 Nov
Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy. Blaženović, Ivana; Kind, Tobias; Torbašinović, Hrvoje; Obrenović, Slobodan; Mehta, Sajjan S; Tsugawa, Hiroshi; Wermuth, Tobias; Schauer, Nicolas; Jahn, Martina; Biedendieck, Rebekka; Jahn, Dieter; Fiehn, Oliver Journal of cheminformatics 29086039 2017 May 25
Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients. Wandro, Stephen; Carmody, Lisa; Gallagher, Tara; LiPuma, John J; Whiteson, Katrine mSystems 29202048 2017 Nov-Dec
Pharmacometabolomic signature links simvastatin therapy and insulin resistance. Elbadawi-Sidhu, Mona; Baillie, Rebecca A; Zhu, Hongjie; Chen, Yii-Der Ida; Goodarzi, Mark O; Rotter, Jerome I; Krauss, Ronald M; Fiehn, Oliver; Kaddurah-Daouk, Rima Metabolomics : Official journal of the Metabolomic Society 29732238 2017 01
Neonatal Metabolomic Profiles Related to Prenatal Arsenic Exposure. Laine, Jessica E; Bailey, Kathryn A; Olshan, Andrew F; Smeester, Lisa; Drobná, Zuzana; Stýblo, Miroslav; Douillet, Christelle; García-Vargas, Gonzalo; Rubio-Andrade, Marisela; Pathmasiri, Wimal; McRitchie, Susan; Sumner, Susan J; Fry, Rebecca C Environmental science & technology 27997141 2017 Jan 03
Knowns and unknowns in metabolomics identified by multidimensional NMR and hybrid MS/NMR methods. Bingol, Kerem; Brüschweiler, Rafael Current opinion in biotechnology 27552705 2017 Feb
Experimental and Theoretical Investigation of Sodiated Multimers of Steroid Epimers with Ion Mobility-Mass Spectrometry. Chouinard, Christopher D; Cruzeiro, Vinícius Wilian D; Roitberg, Adrian E; Yost, Richard A Journal of the American Society for Mass Spectrometry 27914014 2017 Feb
A Robust Lipidomics Workflow for Mammalian Cells, Plasma, and Tissue Using Liquid-Chromatography High-Resolution Tandem Mass Spectrometry. Ulmer, Candice Z; Patterson, Rainey E; Koelmel, Jeremy P; Garrett, Timothy J; Yost, Richard A Methods in molecular biology (Clifton, N.J.) 28660577 2017
5-Formylcytosine does not change the global structure of DNA. Hardwick, Jack S; Ptchelkine, Denis; El-Sagheer, Afaf H; Tear, Ian; Singleton, Daniel; Phillips, Simon E V; Lane, Andrew N; Brown, Tom Nature structural & molecular biology 28504696 2017 Jun
Two Cooperative Glycosyltransferases Are Responsible for the Sugar Diversity of Saquayamycins Isolated from Streptomyces sp. KY 40-1. Salem, Shaimaa M; Weidenbach, Stevi; Rohr, Jürgen ACS chemical biology 28892347 2017 Oct 20
Glycolytic reprogramming through PCK2 regulates tumor initiation of prostate cancer cells. Zhao, Jiangsha; Li, Jieran; Fan, Teresa W M; Hou, Steven X Oncotarget 29137367 2017 Oct 13
Dual Inhibition of MEK and PI3K/Akt Rescues Cancer Cachexia through both Tumor-Extrinsic and -Intrinsic Activities. Talbert, Erin E; Yang, Jennifer; Mace, Thomas A; Farren, Matthew R; Farris, Alton B; Young, Gregory S; Elnaggar, Omar; Che, Zheng; Timmers, Cynthia D; Rajasekera, Priyani; Maskarinec, Jennifer M; Bloomston, Mark; Bekaii-Saab, Tanios; Guttridge, Denis C; Lesinski, Gregory B Molecular cancer therapeutics 27811010 2017 02
Adipose Fatty Acid Binding Protein Promotes Saturated Fatty Acid-Induced Macrophage Cell Death through Enhancing Ceramide Production. Zhang, Yuwen; Rao, Enyu; Zeng, Jun; Hao, Jiaqing; Sun, Yanwen; Liu, Shujun; Sauter, Edward R; Bernlohr, David A; Cleary, Margot P; Suttles, Jill; Li, Bing Journal of immunology (Baltimore, Md. : 1950) 27920274 2017 Jan 15
Enhanced Protein Translation Underlies Improved Metabolic and Physical Adaptations to Different Exercise Training Modes in Young and Old Humans. Robinson, Matthew M; Dasari, Surendra; Konopka, Adam R; Johnson, Matthew L; Manjunatha, S; Esponda, Raul Ruiz; Carter, Rickey E; Lanza, Ian R; Nair, K Sreekumaran Cell metabolism 28273480 2017 03 07
Glucose Transporter 3 Potentiates Degranulation and Is Required for Platelet Activation. Fidler, Trevor P; Middleton, Elizabeth A; Rowley, Jesse W; Boudreau, Luc H; Campbell, Robert A; Souvenir, Rhonda; Funari, Trevor; Tessandier, Nicolas; Boilard, Eric; Weyrich, Andrew S; Abel, E Dale Arteriosclerosis, thrombosis, and vascular biology 28663252 2017 Sep
Clots Are Potent Triggers of Inflammatory Cell Gene Expression: Indications for Timely Fibrinolysis. Campbell, Robert A; Vieira-de-Abreu, Adriana; Rowley, Jesse W; Franks, Zechariah G; Manne, Bhanu Kanth; Rondina, Matthew T; Kraiss, Larry W; Majersik, Jennifer J; Zimmerman, Guy A; Weyrich, Andrew S Arteriosclerosis, thrombosis, and vascular biology 28775073 2017 10
Biological determinants of health: Genes, microbes, and metabolism exemplars of nursing science. Ferranti, Erin P; Grossmann, Ruth; Starkweather, Angela; Heitkemper, Margaret Nursing outlook 28576296 2017
NMR-based Metabolomics Analysis of Liver from C57BL/6 Mouse Exposed to Ionizing Radiation. Xiao, Xiongjie; Hu, Mary; Zhang, Xu; Hu, Jian Zhi Radiation research 28463589 2017 Jul
An Interlaboratory Evaluation of Drift Tube Ion Mobility-Mass Spectrometry Collision Cross Section Measurements. Stow, Sarah M; Causon, Tim J; Zheng, Xueyun; Kurulugama, Ruwan T; Mairinger, Teresa; May, Jody C; Rennie, Emma E; Baker, Erin S; Smith, Richard D; McLean, John A; Hann, Stephan; Fjeldsted, John C Analytical chemistry 28763190 2017 Sep 05
Significance estimation for large scale metabolomics annotations by spectral matching. Scheubert, Kerstin; Hufsky, Franziska; Petras, Daniel; Wang, Mingxun; Nothias, Louis-Félix; Dührkop, Kai; Bandeira, Nuno; Dorrestein, Pieter C; Böcker, Sebastian Nature communications 29133785 2017 Nov 14
Microprobe Capillary Electrophoresis Mass Spectrometry for Single-cell Metabolomics in Live Frog (Xenopus laevis) Embryos. Onjiko, Rosemary M; Portero, Erika P; Moody, Sally A; Nemes, Peter Journal of visualized experiments : JoVE 29286491 2017 Dec 22
Monitoring cell secretions on microfluidic chips using solid-phase extraction with mass spectrometry. Dugan, Colleen E; Grinias, James P; Parlee, Sebastian D; El-Azzouny, Mahmoud; Evans, Charles R; Kennedy, Robert T Analytical and bioanalytical chemistry 27761614 2017 Jan
Mass spectrometry analysis shows the biosynthetic pathways supported by pyruvate carboxylase in highly invasive breast cancer cells. Phannasil, Phatchariya; Ansari, Israr-Ul H; El Azzouny, Mahmoud; Longacre, Melissa J; Rattanapornsompong, Khanti; Burant, Charles F; MacDonald, Michael J; Jitrapakdee, Sarawut Biochimica et biophysica acta. Molecular basis of disease 27890529 2017 Feb
Correction: Calcium Reduces Liver Injury in Mice on a High-Fat Diet: Alterations in Microbial and Bile Acid Profiles. Aslam, Muhammad Nadeem; Bassis, Christine M; Zhang, Li; Zaidi, Sameer; Varani, James; Bergin, Ingrid L PloS one 28068422 2017
Preclinical Evaluation of 11C-Sarcosine as a Substrate of Proton-Coupled Amino Acid Transporters and First Human Application in Prostate Cancer. Piert, Morand; Shao, Xia; Raffel, David; Davenport, Mathew S; Montgomery, Jeffrey; Kunju, Lakshmi Priya; Hockley, Brian G; Siddiqui, Javed; Scott, Peter J H; Chinnaiyan, Arul M; Rajendiran, Thekkelnaycke Journal of nuclear medicine : official publication, Society of Nuclear Medicine 28302759 2017 Aug
Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation. Calvert, Andrea E; Chalastanis, Alexandra; Wu, Yongfei; Hurley, Lisa A; Kouri, Fotini M; Bi, Yingtao; Kachman, Maureen; May, Jasmine L; Bartom, Elizabeth; Hua, Youjia; Mishra, Rama K; Schiltz, Gary E; Dubrovskyi, Oleksii; Mazar, Andrew P; Peter, Marcus E; Zheng, Hongwu; James, C David; Burant, Charles F; Chandel, Navdeep S; Davuluri, Ramana V; Horbinski, Craig; Stegh, Alexander H Cell reports 28564604 2017 May 30
Early PQQ supplementation has persistent long-term protective effects on developmental programming of hepatic lipotoxicity and inflammation in obese mice. Jonscher, Karen R; Stewart, Michael S; Alfonso-Garcia, Alba; DeFelice, Brian C; Wang, Xiaoxin X; Luo, Yuhuan; Levi, Moshe; Heerwagen, Margaret J R; Janssen, Rachel C; de la Houssaye, Becky A; Wiitala, Ellen; Florey, Garrett; Jonscher, Raleigh L; Potma, Eric O; Fiehn, Oliver; Friedman, Jacob E FASEB journal : official publication of the Federation of American Societies for Experimental Biology 28007783 2017 04
Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase. Mafu, Sibongile; Karunanithi, Prema Sambandaswami; Palazzo, Teresa Ann; Harrod, Bronwyn Lee; Rodriguez, Selina Marakana; Mollhoff, Iris Natalie; O'Brien, Terrence Edward; Tong, Shen; Fiehn, Oliver; Tantillo, Dean J; Bohlmann, Jörg; Zerbe, Philipp Proceedings of the National Academy of Sciences of the United States of America 28096378 2017 Jan 31
Combined Effects of Gestational Phthalate Exposure and Zinc Deficiency on Steroid Metabolism and Growth. Nuttall, Johnathan R; Kucera, Heidi R; Supasai, Suangsuda; Gaikwad, Nilesh W; Oteiza, Patricia I Toxicological sciences : an official journal of the Society of Toxicology 28115639 2017 Apr 01
Mass Spectral Feature List Optimizer (MS-FLO): A Tool To Minimize False Positive Peak Reports in Untargeted Liquid Chromatography-Mass Spectroscopy (LC-MS) Data Processing. DeFelice, Brian C; Mehta, Sajjan Singh; Samra, Stephanie; Čajka, Tomáš; Wancewicz, Benjamin; Fahrmann, Johannes F; Fiehn, Oliver Analytical chemistry 28225594 2017 03 21
Cyclooxygenase-derived proangiogenic metabolites of epoxyeicosatrienoic acids. Rand, Amy A; Barnych, Bogdan; Morisseau, Christophe; Cajka, Tomas; Lee, Kin Sing Stephen; Panigrahy, Dipak; Hammock, Bruce D Proceedings of the National Academy of Sciences of the United States of America 28396419 2017 Apr 25
Lipoxygenase Activity Accelerates Programmed Spore Germination in Aspergillus fumigatus. Fischer, Gregory J; Bacon, William; Yang, Jun; Palmer, Jonathan M; Dagenais, Taylor; Hammock, Bruce D; Keller, Nancy P Frontiers in microbiology 28536571 2017
Draft Genome Sequences of Salmonella Lysozyme Gene Knockout Mutants. Arabyan, Narine; Huang, Bihua C; Weimer, Bart C Genome announcements 28596411 2017 Jun 08
LC-MS-Based Lipidomics and Automated Identification of Lipids Using the LipidBlast In-Silico MS/MS Library. Cajka, Tomas; Fiehn, Oliver Methods in molecular biology (Clifton, N.J.) 28660581 2017
Dose-related liver injury of Geniposide associated with the alteration in bile acid synthesis and transportation. Tian, Jingzhuo; Zhu, Jingjing; Yi, Yan; Li, Chunying; Zhang, Yushi; Zhao, Yong; Pan, Chen; Xiang, Shixie; Li, Xiaolong; Li, Guiqin; Newman, John W; Feng, Xiaoyi; Liu, Jing; Han, Jiayin; Wang, Lianmei; Gao, Yue; La Frano, Michael R; Liang, Aihua Scientific reports 28827769 2017 Aug 21
Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets. Barupal, Dinesh Kumar; Fiehn, Oliver Scientific reports 29109515 2017 Nov 06
Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry. Kind, Tobias; Fiehn, Oliver Phytochemistry letters 29225718 2017 Sep
Oleocanthal-rich extra virgin olive oil demonstrates acute anti-platelet effects in healthy men in a randomized trial. Agrawal, Karan; Melliou, Eleni; Li, Xueqi; Pedersen, Theresa L; Wang, Selina C; Magiatis, Prokopios; Newman, John W; Holt, Roberta R Journal of functional foods 29904393 2017 Sep
Using MS-FINDER for identifying 19 natural products in the CASMI 2016 contest. Vaniya, Arpana; Samra, Stephanie N; Palazoglu, Mine; Tsugawa, Hiroshi; Fiehn, Oliver Phytochemistry letters 31576201 2017 Sep
Preterm neonatal urinary renal developmental and acute kidney injury metabolomic profiling: an exploratory study. Mercier, Kelly; McRitchie, Susan; Pathmasiri, Wimal; Novokhatny, Andrew; Koralkar, Rajesh; Askenazi, David; Brophy, Patrick D; Sumner, Susan Pediatric nephrology (Berlin, Germany) 27435284 2017 Jan
Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation. Koelmel, Jeremy P; Kroeger, Nicholas M; Gill, Emily L; Ulmer, Candice Z; Bowden, John A; Patterson, Rainey E; Yost, Richard A; Garrett, Timothy J Journal of the American Society for Mass Spectrometry 28265968 2017 May
LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data. Koelmel, Jeremy P; Kroeger, Nicholas M; Ulmer, Candice Z; Bowden, John A; Patterson, Rainey E; Cochran, Jason A; Beecher, Christopher W W; Garrett, Timothy J; Yost, Richard A BMC bioinformatics 28693421 2017 Jul 10
Metabolomic Evaluation of the Consequences of Plasma Cystathionine Elevation in Adults with Stable Angina Pectoris. DeRatt, Barbara N; Ralat, Maria A; Lysne, Vegard; Tayyari, Fariba; Dhar, Indu; Edison, Arthur S; Garrett, Timothy J; Midttun, Øivind; Ueland, Per Magne; Nygård, Ottar Kjell; Gregory 3rd, Jesse F The Journal of nutrition 28794210 2017 Sep
Untargeted metabolomic analysis in naturally occurring canine diabetes mellitus identifies similarities to human Type 1 Diabetes. O'Kell, Allison L; Garrett, Timothy J; Wasserfall, Clive; Atkinson, Mark A Scientific reports 28842637 2017 08 25
Ketogenesis contributes to intestinal cell differentiation. Wang, Qingding; Zhou, Yuning; Rychahou, Piotr; Fan, Teresa W-M; Lane, Andrew N; Weiss, Heidi L; Evers, B Mark Cell death and differentiation 27935584 2017 03
Chloroformate derivatization for tracing the fate of Amino acids in cells and tissues by multiple stable isotope resolved metabolomics (mSIRM). Yang, Ye; Fan, Teresa W-M; Lane, Andrew N; Higashi, Richard M Analytica chimica acta 28576319 2017 Jul 11
Randomized Controlled Trial of a MUFA or Fiber-Rich Diet on Hepatic Fat in Prediabetes. Errazuriz, Isabel; Dube, Simmi; Slama, Michael; Visentin, Roberto; Nayar, Sunita; O'Connor, Helen; Cobelli, Claudio; Das, Swapan Kumar; Basu, Ananda; Kremers, Walter Karl; Port, John; Basu, Rita The Journal of clinical endocrinology and metabolism 28323952 2017 05 01
Very-long-chain ω-3 fatty acid supplements and adipose tissue functions: a randomized controlled trial. Hames, Kazanna C; Morgan-Bathke, Maria; Harteneck, Debra A; Zhou, Lendia; Port, John D; Lanza, Ian R; Jensen, Michael D The American journal of clinical nutrition 28424185 2017 Jun
Combining a nontargeted and targeted metabolomics approach to identify metabolic pathways significantly altered in polycystic ovary syndrome. Chang, Alice Y; Lalia, Antigoni Z; Jenkins, Gregory D; Dutta, Tumpa; Carter, Rickey E; Singh, Ravinder J; Nair, K Sreekumaran Metabolism: clinical and experimental 28521878 2017 Jun
Genetic Depletion of Adipocyte Creatine Metabolism Inhibits Diet-Induced Thermogenesis and Drives Obesity. Kazak, Lawrence; Chouchani, Edward T; Lu, Gina Z; Jedrychowski, Mark P; Bare, Curtis J; Mina, Amir I; Kumari, Manju; Zhang, Song; Vuckovic, Ivan; Laznik-Bogoslavski, Dina; Dzeja, Petras; Banks, Alexander S; Rosen, Evan D; Spiegelman, Bruce M Cell metabolism 28844881 2017 Oct 03
Retinoic acid receptor-α regulates synthetic events in human platelets. Schwertz, H; Rowley, J W; Zimmerman, G A; Weyrich, A S; Rondina, M T Journal of thrombosis and haemostasis : JTH 28981191 2017 12
Natural products as mediators of disease. Garg, Neha; Luzzatto-Knaan, Tal; Melnik, Alexey V; Caraballo-Rodríguez, Andrés Mauricio; Floros, Dimitrios J; Petras, Daniel; Gregor, Rachel; Dorrestein, Pieter C; Phelan, Vanessa V Natural product reports 27874907 2017 Feb 01
Emerging Impact of Malnutrition on Surgical Patients: Literature Review and Potential Implications for Cystectomy in Bladder Cancer. Tobert, Conrad M; Hamilton-Reeves, Jill M; Norian, Lyse A; Hung, Chermaine; Brooks, Nathan A; Holzbeierlein, Jeff M; Downs, Tracy M; Robertson, Douglas P; Grossman, Ruth; Nepple, Kenneth G The Journal of urology 28286066 2017 09
Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go? Metz, Thomas O; Baker, Erin S; Schymanski, Emma L; Renslow, Ryan S; Thomas, Dennis G; Causon, Tim J; Webb, Ian K; Hann, Stephan; Smith, Richard D; Teeguarden, Justin G Bioanalysis 27921453 2017 Jan
Exploring cancer metabolism using stable isotope-resolved metabolomics (SIRM). Bruntz, Ronald C; Lane, Andrew N; Higashi, Richard M; Fan, Teresa W-M The Journal of biological chemistry 28592486 2017 07 14
Meta-mass shift chemical profiling of metabolomes from coral reefs. Hartmann, Aaron C; Petras, Daniel; Quinn, Robert A; Protsyuk, Ivan; Archer, Frederick I; Ransome, Emma; Williams, Gareth J; Bailey, Barbara A; Vermeij, Mark J A; Alexandrov, Theodore; Dorrestein, Pieter C; Rohwer, Forest L Proceedings of the National Academy of Sciences of the United States of America 29078340 2017 Oct 31
Altered metabolite levels and correlations in patients with colorectal cancer and polyps detected using seemingly unrelated regression analysis. Chen, Chen; Gowda, G A Nagana; Zhu, Jiangjiang; Deng, Lingli; Gu, Haiwei; Chiorean, E Gabriela; Zaid, Mohammad Abu; Harrison, Marietta; Zhang, Dabao; Zhang, Min; Raftery, Daniel Metabolomics : Official journal of the Metabolomic Society 30814918 2017 Nov
The aryl hydrocarbon receptor as a moderator of host-microbiota communication. Zhang, Limin; Nichols, Robert G; Patterson, Andrew D Current opinion in toxicology 29527582 2017 Feb
Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry. Zheng, Xueyun; Renslow, Ryan S; Makola, Mpho M; Webb, Ian K; Deng, Liulin; Thomas, Dennis G; Govind, Niranjan; Ibrahim, Yehia M; Kabanda, Mwadham M; Dubery, Ian A; Heyman, Heino M; Smith, Richard D; Madala, Ntakadzeni E; Baker, Erin S The journal of physical chemistry letters 28267339 2017 Apr 06
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association. Ma, Jian; Casey, Cameron P; Zheng, Xueyun; Ibrahim, Yehia M; Wilkins, Christopher S; Renslow, Ryan S; Thomas, Dennis G; Payne, Samuel H; Monroe, Matthew E; Smith, Richard D; Teeguarden, Justin G; Baker, Erin S; Metz, Thomas O Bioinformatics (Oxford, England) 28505286 2017 Sep 01
Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry. Zheng, Xueyun; Deng, Liulin; Baker, Erin S; Ibrahim, Yehia M; Petyuk, Vladislav A; Smith, Richard D Chemical communications (Cambridge, England) 28654112 2017 Jul 11
Differential Regulation of Macrophage Glucose Metabolism by Macrophage Colony-stimulating Factor and Granulocyte-Macrophage Colony-stimulating Factor: Implications for 18F FDG PET Imaging of Vessel Wall Inflammation. Tavakoli, Sina; Short, John D; Downs, Kevin; Nguyen, Huynh Nga; Lai, Yanlai; Zhang, Wei; Jerabek, Paul; Goins, Beth; Sadeghi, Mehran M; Asmis, Reto Radiology 27849433 2017 Apr
1,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathway. Vences-Guzmán, Miguel Ángel; Paula Goetting-Minesky, M; Guan, Ziqiang; Castillo-Ramirez, Santiago; Córdoba-Castro, Luz América; López-Lara, Isabel M; Geiger, Otto; Sohlenkamp, Christian; Christopher Fenno, J Molecular microbiology 28009086 2017 Mar
Local cryotherapy minimally impacts the metabolome and transcriptome of human skeletal muscle. Sarver, Dylan C; Sugg, Kristoffer B; Disser, Nathaniel P; Enselman, Elizabeth R Sibilsky; Awan, Tariq M; Mendias, Christopher L Scientific reports 28546635 2017 05 25
Perinatal triphenyl phosphate exposure accelerates type 2 diabetes onset and increases adipose accumulation in UCD-type 2 diabetes mellitus rats. Green, Adrian J; Graham, James L; Gonzalez, Eduardo A; La Frano, Michael R; Petropoulou, Syrago-Styliani E; Park, June-Soo; Newman, John W; Stanhope, Kimber L; Havel, Peter J; La Merrill, Michele A Reproductive toxicology (Elmsford, N.Y.) 27421578 2017 Mar
Acylcarnitines as markers of exercise-associated fuel partitioning, xenometabolism, and potential signals to muscle afferent neurons. Zhang, Jie; Light, Alan R; Hoppel, Charles L; Campbell, Caitlin; Chandler, Carol J; Burnett, Dustin J; Souza, Elaine C; Casazza, Gretchen A; Hughen, Ronald W; Keim, Nancy L; Newman, John W; Hunter, Gary R; Fernandez, Jose R; Garvey, W Timothy; Harper, Mary-Ellen; Fiehn, Oliver; Adams, Sean H Experimental physiology 27730694 2017 01 01
Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators. Flitter, Becca A; Hvorecny, Kelli L; Ono, Emiko; Eddens, Taylor; Yang, Jun; Kwak, Daniel H; Bahl, Christopher D; Hampton, Thomas H; Morisseau, Christophe; Hammock, Bruce D; Liu, Xinyu; Lee, Janet S; Kolls, Jay K; Levy, Bruce D; Madden, Dean R; Bomberger, Jennifer M Proceedings of the National Academy of Sciences of the United States of America 27980032 2017 Jan 03
Active-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase. Hvorecny, Kelli L; Bahl, Christopher D; Kitamura, Seiya; Lee, Kin Sing Stephen; Hammock, Bruce D; Morisseau, Christophe; Madden, Dean R Structure (London, England : 1993) 28392259 2017 May 02
Metabolomic characteristics of cholesterol-induced non-obese nonalcoholic fatty liver disease in mice. Tu, Lan N; Showalter, Megan R; Cajka, Tomas; Fan, Sili; Pillai, Viju V; Fiehn, Oliver; Selvaraj, Vimal Scientific reports 28733574 2017 Jul 21
Personalized polyunsaturated fatty acids as a potential adjunctive treatment for anorexia nervosa. Shih, P Betty; Morisseau, Christophe; Le, Thu; Woodside, Blake; German, J Bruce Prostaglandins & other lipid mediators 28873340 2017 Nov
Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation. Lai, Zijuan; Kind, Tobias; Fiehn, Oliver Analytical chemistry 28876899 2017 10 03
Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice. Deol, Poonamjot; Fahrmann, Johannes; Yang, Jun; Evans, Jane R; Rizo, Antonia; Grapov, Dmitry; Salemi, Michelle; Wanichthanarak, Kwanjeera; Fiehn, Oliver; Phinney, Brett; Hammock, Bruce D; Sladek, Frances M Scientific reports 28970503 2017 Oct 02
Validating Quantitative Untargeted Lipidomics Across Nine Liquid Chromatography-High-Resolution Mass Spectrometry Platforms. Cajka, Tomas; Smilowitz, Jennifer T; Fiehn, Oliver Analytical chemistry 29064229 2017 Nov 21
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Precast Gelatin-Based Molds for Tissue Embedding Compatible with Mass Spectrometry Imaging. Gill, Emily L; Yost, Richard A; Vedam-Mai, Vinata; Garrett, Timothy J Analytical chemistry 27935272 2017 Jan 03
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Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases. Chen, Zhaohui; Kim, Jayoung BMC urology 27000794 2016 Mar 22
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A Targeted Metabolomics Assay to Measure Eight Purines in the Diet of Common Bottlenose Dolphins, Tursiops truncatus. Ardente, A J; Garrett, T J; Wells, R S; Walsh, M; Smith, C R; Colee, J; Hill, R C Journal of chromatography & separation techniques 27904786 2016 Oct
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An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis. Chen, Jun; Wright, Kerry; Davis, John M; Jeraldo, Patricio; Marietta, Eric V; Murray, Joseph; Nelson, Heidi; Matteson, Eric L; Taneja, Veena Genome medicine 27102666 2016 Apr 21
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Gene deficiency and pharmacological inhibition of soluble epoxide hydrolase confers resilience to repeated social defeat stress. Ren, Qian; Ma, Min; Ishima, Tamaki; Morisseau, Christophe; Yang, Jun; Wagner, Karen M; Zhang, Ji-Chun; Yang, Chun; Yao, Wei; Dong, Chao; Han, Mei; Hammock, Bruce D; Hashimoto, Kenji Proceedings of the National Academy of Sciences of the United States of America 26976569 2016 Mar 29
Immune checkpoint blockade therapy for bladder cancer treatment. Kim, Jayoung Investigative and clinical urology 27326412 2016 06
Mitochondrial Pyruvate Import Promotes Long-Term Survival of Antibody-Secreting Plasma Cells. Lam, Wing Y; Becker, Amy M; Kennerly, Krista M; Wong, Rachel; Curtis, Jonathan D; Llufrio, Elizabeth M; McCommis, Kyle S; Fahrmann, Johannes; Pizzato, Hannah A; Nunley, Ryan M; Lee, Jieun; Wolfgang, Michael J; Patti, Gary J; Finck, Brian N; Pearce, Erika L; Bhattacharya, Deepta Immunity 27396958 2016 Jul 19
Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software. Tsugawa, Hiroshi; Kind, Tobias; Nakabayashi, Ryo; Yukihira, Daichi; Tanaka, Wataru; Cajka, Tomas; Saito, Kazuki; Fiehn, Oliver; Arita, Masanori Analytical chemistry 27419259 2016 08 16
Circulating levels of endocannabinoids and oxylipins altered by dietary lipids in older women are likely associated with previously identified gene targets. Watkins, Bruce A; Kim, Jeffrey; Kenny, Anne; Pedersen, Theresa L; Pappan, Kirk L; Newman, John W Biochimica et biophysica acta 27452639 2016 Nov
Effect of a Soluble Epoxide Hydrolase Inhibitor, UC1728, on LPS-Induced Uveitis in the Rabbit. McLellan, Gillian J; Aktas, Zeynep; Hennes-Beean, Elizabeth; Kolb, Aaron W; Larsen, Inna V; Schmitz, Emily J; Clausius, Hilary R; Yang, Jun; Hwang, Sung Hee; Morisseau, Christophe; Inceoglu, Bora; Hammock, Bruce D; Brandt, Curtis R Journal of ocular biology 28066796 2016 Jan
Validation of a Metallomics Analysis of Placenta Tissue by Inductively-Coupled Plasma Mass Spectrometry. Harrington, James M; Young, Daniel J; Fry, Rebecca C; Weber, Frank X; Sumner, Susan S; Levine, Keith E Biological trace element research 26155965 2016 Feb
Metabolomics Reveals New Mechanisms for Pathogenesis in Barth Syndrome and Introduces Novel Roles for Cardiolipin in Cellular Function. Sandlers, Yana; Mercier, Kelly; Pathmasiri, Wimal; Carlson, Jim; McRitchie, Susan; Sumner, Susan; Vernon, Hilary J PloS one 27015085 2016
The Importance of the Biological Impact of Exposure to the Concept of the Exposome. Dennis, Kristine K; Auerbach, Scott S; Balshaw, David M; Cui, Yuxia; Fallin, Margaret Daniele; Smith, Martyn T; Spira, Avrum; Sumner, Susan; Miller, Gary W Environmental health perspectives 27258438 2016 Oct
Metabolomics Analysis of Hormone-Responsive and Triple-Negative Breast Cancer Cell Responses to Paclitaxel Identify Key Metabolic Differences. Stewart, Delisha A; Winnike, Jason H; McRitchie, Susan L; Clark, Robert F; Pathmasiri, Wimal W; Sumner, Susan J Journal of proteome research 27447733 2016 Sep 02
Ion Mobility in Clinical Analysis: Current Progress and Future Perspectives. Chouinard, Christopher D; Wei, Michael S; Beekman, Christopher R; Kemperman, Robin H J; Yost, Richard A Clinical chemistry 26585928 2016 Jan
Nanoparticle-Assisted Removal of Protein in Human Serum for Metabolomics Studies. Zhang, Bo; Xie, Mouzhe; Bruschweiler-Li, Lei; Brüschweiler, Rafael Analytical chemistry 26605638 2016 Jan 05
Isotopic Ratio Outlier Analysis of the S. cerevisiae Metabolome Using Accurate Mass Gas Chromatography/Time-of-Flight Mass Spectrometry: A New Method for Discovery. Qiu, Yunping; Moir, Robyn; Willis, Ian; Beecher, Chris; Tsai, Yu-Hsuan; Garrett, Timothy J; Yost, Richard A; Kurland, Irwin J Analytical chemistry 26820234 2016 Mar 01
Use of Ion Chromatography/Mass Spectrometry for Targeted Metabolite Profiling of Polar Organic Acids. Petucci, Chris; Zelenin, Andrew; Culver, Jeffrey A; Gabriel, Meghan; Kirkbride, Ken; Christison, Terri T; Gardell, Stephen J Analytical chemistry 27782384 2016 Dec 06
Distinctly perturbed metabolic networks underlie differential tumor tissue damages induced by immune modulator β-glucan in a two-case ex vivo non-small-cell lung cancer study. Fan, Teresa W-M; Warmoes, Marc O; Sun, Qiushi; Song, Huan; Turchan-Cholewo, Jadwiga; Martin, Jeremiah T; Mahan, Angela; Higashi, Richard M; Lane, Andrew N Cold Spring Harbor molecular case studies 27551682 2016 Jul
Mechanism by Which Caloric Restriction Improves Insulin Sensitivity in Sedentary Obese Adults. Johnson, Matthew L; Distelmaier, Klaus; Lanza, Ian R; Irving, Brian A; Robinson, Matthew M; Konopka, Adam R; Shulman, Gerald I; Nair, K Sreekumaran Diabetes 26324180 2016 Jan
Hepatocytes release ceramide-enriched pro-inflammatory extracellular vesicles in an IRE1α-dependent manner. Kakazu, Eiji; Mauer, Amy S; Yin, Meng; Malhi, Harmeet Journal of lipid research 26621917 2016 Feb
Hyperglucagonemia Mitigates the Effect of Metformin on Glucose Production in Prediabetes. Konopka, Adam R; Esponda, Raul Ruiz; Robinson, Matthew M; Johnson, Matthew L; Carter, Rickey E; Schiavon, Michele; Cobelli, Claudio; Wondisford, Fredric E; Lanza, Ian R; Nair, K Sreekumaran Cell reports 27160898 2016 05 17
Precision medicine of aneurysmal subarachnoid hemorrhage, vasospasm and delayed cerebral ischemia. Burrell, Christian; Avalon, Nicole E; Siegel, Jason; Pizzi, Michael; Dutta, Tumpa; Charlesworth, M Cristine; Freeman, William D Expert review of neurotherapeutics 27314601 2016 Nov
Functional and proteomic alterations of plasma high density lipoproteins in type 1 diabetes mellitus. Manjunatha, Shankarappa; Distelmaier, Klaus; Dasari, Surendra; Carter, Rickey E; Kudva, Yogish C; Nair, K Sreekumaran Metabolism: clinical and experimental 27506748 2016 Sep
Prolonged Exposure of Primary Human Muscle Cells to Plasma Fatty Acids Associated with Obese Phenotype Induces Persistent Suppression of Muscle Mitochondrial ATP Synthase β Subunit. Tran, Lee; Hanavan, Paul D; Campbell, Latoya E; De Filippis, Elena; Lake, Douglas F; Coletta, Dawn K; Roust, Lori R; Mandarino, Lawrence J; Carroll, Chad C; Katsanos, Christos S PloS one 27532680 2016
Eulogy for the Metabolic Clinical Investigator? Vella, Adrian; Jensen, Michael D; Nair, K Sreekumaran Diabetes 27659223 2016 10
MyoD Regulates Skeletal Muscle Oxidative Metabolism Cooperatively with Alternative NF-κB. Shintaku, Jonathan; Peterson, Jennifer M; Talbert, Erin E; Gu, Jin-Mo; Ladner, Katherine J; Williams, Dustin R; Mousavi, Kambiz; Wang, Ruoning; Sartorelli, Vittorio; Guttridge, Denis C Cell reports 27705798 2016 10 04
Interleukin 10 Restores Gastric Emptying, Electrical Activity, and Interstitial Cells of Cajal Networks in Diabetic Mice. Choi, Kyoung Moo; Gibbons, Simon J; Sha, Lei; Beyder, Arthur; Verhulst, Pieter-Jan; Cipriani, Gianluca; Phillips, Jessica E; Bauer, Anthony J; Ordog, Tamas; Camp, Jon J; Ge, Xin; Bharucha, Adil E; Linden, David R; Szurszewski, Joseph H; Kashyap, Purna C; Farrugia, Gianrico Cellular and molecular gastroenterology and hepatology 27795979 2016 Jul
Metabolomics applied to the pancreatic islet. Gooding, Jessica R; Jensen, Mette V; Newgard, Christopher B Archives of biochemistry and biophysics 26116790 2016 Jan 01
Mass Spectrometric Collisional Activation and Product Ion Mobility of Human Serum Neutral Lipid Extracts. Hankin, Joseph A; Barkley, Robert M; Zemski-Berry, Karin; Deng, Yiming; Murphy, Robert C Analytical chemistry 27213895 2016 Jun 21
Tandem mass spectrometry of novel ether-linked phospholipid analogs of anionic pulmonary surfactant phospholipids. Fickes, Rachel; Voelker, Dennis R; Berry, Karin Zemski; Murphy, Robert C Rapid communications in mass spectrometry : RCM 27689848 2016 Dec 30
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PPAR-pan activation induces hepatic oxidative stress and lipidomic remodelling. Ament, Zsuzsanna; West, James A; Stanley, Elizabeth; Ashmore, Tom; Roberts, Lee D; Wright, Jayne; Nicholls, Andrew W; Griffin, Julian L Free radical biology & medicine 26654758 2016 06
Expression of the aryl hydrocarbon receptor contributes to the establishment of intestinal microbial community structure in mice. Murray, Iain A; Nichols, Robert G; Zhang, Limin; Patterson, Andrew D; Perdew, Gary H Scientific reports 27659481 2016 Sep 23
Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry. Burnum-Johnson, Kristin E; Nie, Song; Casey, Cameron P; Monroe, Matthew E; Orton, Daniel J; Ibrahim, Yehia M; Gritsenko, Marina A; Clauss, Therese R W; Shukla, Anil K; Moore, Ronald J; Purvine, Samuel O; Shi, Tujin; Qian, Weijun; Liu, Tao; Baker, Erin S; Smith, Richard D Molecular & cellular proteomics : MCP 27670688 2016 Dec
Statistical Approaches to Candidate Biomarker Panel Selection. Spratt, Heidi M; Ju, Hyunsu Advances in experimental medicine and biology 27975231 2016
18F-Choline PET/MRI: The Additional Value of PET for MRI-Guided Transrectal Prostate Biopsies. Piert, Morand; Montgomery, Jeffrey; Kunju, Lakshmi Priya; Siddiqui, Javed; Rogers, Virginia; Rajendiran, Thekkelnaycke; Johnson, Timothy D; Shao, Xia; Davenport, Matthew S Journal of nuclear medicine : official publication, Society of Nuclear Medicine 26985061 2016 Jul
Knockdown of ATP citrate lyase in pancreatic beta cells does not inhibit insulin secretion or glucose flux and implicates the acetoacetate pathway in insulin secretion. El Azzouny, Mahmoud; Longacre, Melissa J; Ansari, Israr-Ul H; Kennedy, Robert T; Burant, Charles F; MacDonald, Michael J Molecular metabolism 27689010 2016 Oct
Dysregulation of soluble epoxide hydrolase and lipidomic profiles in anorexia nervosa. Shih, P B; Yang, J; Morisseau, C; German, J B; Zeeland, A A Scott-Van; Armando, A M; Quehenberger, O; Bergen, A W; Magistretti, P; Berrettini, W; Halmi, K A; Schork, N; Hammock, B D; Kaye, W Molecular psychiatry 25824304 2016 Apr
Microbial metabolomics in open microscale platforms. Barkal, Layla J; Theberge, Ashleigh B; Guo, Chun-Jun; Spraker, Joe; Rappert, Lucas; Berthier, Jean; Brakke, Kenneth A; Wang, Clay C C; Beebe, David J; Keller, Nancy P; Berthier, Erwin Nature communications 26842393 2016 Feb 04
A Randomized Placebo Controlled Trial of Ibuprofen for Respiratory Syncytial Virus Infection in a Bovine Model. Walsh, Paul; Behrens, Nicole; Carvallo Chaigneau, Francisco R; McEligot, Heather; Agrawal, Karan; Newman, John W; Anderson, Mark; Gershwin, Laurel J PloS one 27073858 2016
Bile acids promote diethylnitrosamine-induced hepatocellular carcinoma via increased inflammatory signaling. Sun, Lina; Beggs, Kevin; Borude, Prachi; Edwards, Genea; Bhushan, Bharat; Walesky, Chad; Roy, Nairita; Manley Jr, Michael W; Gunewardena, Sumedha; O'Neil, Maura; Li, Hua; Apte, Udayan American journal of physiology. Gastrointestinal and liver physiology 27151938 2016 07 01
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Association of urinary metabolites with radiographic progression of knee osteoarthritis in overweight and obese adults: an exploratory study. Loeser, R F; Pathmasiri, W; Sumner, S J; McRitchie, S; Beavers, D; Saxena, P; Nicklas, B J; Jordan, J; Guermazi, A; Hunter, D J; Messier, S P Osteoarthritis and cartilage 27012755 2016 08
Blood type biochemistry and human disease. Ewald, D Rose; Sumner, Susan C J Wiley interdisciplinary reviews. Systems biology and medicine 27599872 2016 Nov
Differential Neuroproteomic and Systems Biology Analysis of Spinal Cord Injury. Moghieb, Ahmed; Bramlett, Helen M; Das, Jyotirmoy H; Yang, Zhihui; Selig, Tyler; Yost, Richard A; Wang, Michael S; Dietrich, W Dalton; Wang, Kevin K W Molecular & cellular proteomics : MCP 27150525 2016 07
NMR-based metabolomics reveals urinary metabolome modifications in female Sprague-Dawley rats by cranberry procyanidins. Liu, Haiyan; Tayyari, Fariba; Edison, Arthur S; Su, Zhihua; Gu, Liwei The Journal of nutritional biochemistry 27309592 2016 08
Mutant IDH1 and thrombosis in gliomas. Unruh, Dusten; Schwarze, Steven R; Khoury, Laith; Thomas, Cheddhi; Wu, Meijing; Chen, Li; Chen, Rui; Liu, Yinxing; Schwartz, Margaret A; Amidei, Christina; Kumthekar, Priya; Benjamin, Carolina G; Song, Kristine; Dawson, Caleb; Rispoli, Joanne M; Fatterpekar, Girish; Golfinos, John G; Kondziolka, Douglas; Karajannis, Matthias; Pacione, Donato; Zagzag, David; McIntyre, Thomas; Snuderl, Matija; Horbinski, Craig Acta neuropathologica 27664011 2016 12
Utilizing magnetization transfer imaging to investigate tissue remodeling in a murine model of autosomal dominant polycystic kidney disease. Kline, Timothy L; Irazabal, Maria V; Ebrahimi, Behzad; Hopp, Katharina; Udoji, Kelly N; Warner, Joshua D; Korfiatis, Panagiotis; Mishra, Prasanna K; Macura, Slobodan I; Venkatesh, Sudhakar K; Lerman, Lilach O; Harris, Peter C; Torres, Vicente E; King, Bernard F; Erickson, Bradley J Magnetic resonance in medicine 25974140 2016 Apr
Predictors of Whole-Body Insulin Sensitivity Across Ages and Adiposity in Adult Humans. Lalia, Antigoni Z; Dasari, Surendra; Johnson, Matthew L; Robinson, Matthew M; Konopka, Adam R; Distelmaier, Klaus; Port, John D; Glavin, Maria T; Esponda, Raul Ruiz; Nair, K Sreekumaran; Lanza, Ian R The Journal of clinical endocrinology and metabolism 26709968 2016 Feb
Release of skeletal muscle peptide fragments identifies individual proteins degraded during insulin deprivation in type 1 diabetic humans and mice. Robinson, Matthew M; Dasari, Surendra; Karakelides, Helen; Bergen 3rd, H Robert; Nair, K Sreekumaran American journal of physiology. Endocrinology and metabolism 27436610 2016 Sep 01
Neonatal NET-inhibitory factor and related peptides inhibit neutrophil extracellular trap formation. Yost, Christian C; Schwertz, Hansjörg; Cody, Mark J; Wallace, Jared A; Campbell, Robert A; Vieira-de-Abreu, Adriana; Araujo, Claudia V; Schubert, Sebastian; Harris, Estelle S; Rowley, Jesse W; Rondina, Matthew T; Fulcher, James M; Koening, Curry L; Weyrich, Andrew S; Zimmerman, Guy A The Journal of clinical investigation 27599294 2016 Oct 03
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Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation. Noecker, Cecilia; Eng, Alexander; Srinivasan, Sujatha; Theriot, Casey M; Young, Vincent B; Jansson, Janet K; Fredricks, David N; Borenstein, Elhanan mSystems 27239563 2016 Jan-Feb
Rapid and profound rewiring of brain lipid signaling networks by acute diacylglycerol lipase inhibition. Ogasawara, Daisuke; Deng, Hui; Viader, Andreu; Baggelaar, Marc P; Breman, Arjen; den Dulk, Hans; van den Nieuwendijk, Adrianus M C H; Soethoudt, Marjolein; van der Wel, Tom; Zhou, Juan; Overkleeft, Herman S; Sanchez-Alavez, Manuel; Mori, Simone; Nguyen, William; Conti, Bruno; Liu, Xiaojie; Chen, Yao; Liu, Qing-Song; Cravatt, Benjamin F; van der Stelt, Mario Proceedings of the National Academy of Sciences of the United States of America 26668358 2016 Jan 05
Fatty Acid Oxidation Mediated by Acyl-CoA Synthetase Long Chain 3 Is Required for Mutant KRAS Lung Tumorigenesis. Padanad, Mahesh S; Konstantinidou, Georgia; Venkateswaran, Niranjan; Melegari, Margherita; Rindhe, Smita; Mitsche, Matthew; Yang, Chendong; Batten, Kimberly; Huffman, Kenneth E; Liu, Jingwen; Tang, Ximing; Rodriguez-Canales, Jaime; Kalhor, Neda; Shay, Jerry W; Minna, John D; McDonald, Jeffrey; Wistuba, Ignacio I; DeBerardinis, Ralph J; Scaglioni, Pier Paolo Cell reports 27477280 2016 Aug 09
Lactate metabolism is associated with mammalian mitochondria. Chen, Ying-Jr; Mahieu, Nathaniel G; Huang, Xiaojing; Singh, Manmilan; Crawford, Peter A; Johnson, Stephen L; Gross, Richard W; Schaefer, Jacob; Patti, Gary J Nature chemical biology 27618187 2016 Nov
Inaccurate quantitation of palmitate in metabolomics and isotope tracer studies due to plastics. Yao, Cong-Hui; Liu, Gao-Yuan; Yang, Kui; Gross, Richard W; Patti, Gary J Metabolomics : Official journal of the Metabolomic Society 27721678 2016 Sep
Antioxidant Drug Tempol Promotes Functional Metabolic Changes in the Gut Microbiota. Cai, Jingwei; Zhang, Limin; Jones, Richard A; Correll, Jared B; Hatzakis, Emmanuel; Smith, Philip B; Gonzalez, Frank J; Patterson, Andrew D Journal of proteome research 26696396 2016 Feb 05
Metabolomics dataset of PPAR-pan treated rat liver. Ament, Zsuzsanna; West, James A; Stanley, Elizabeth; Li, Xuefei; Ashmore, Tom; Roberts, Lee D; Wright, Jayne; Nicholls, Andrew W; Griffin, Julian L Data in brief 27331087 2016 Sep
Glycosylation Signatures of Inflammation Identify Cardiovascular Risk: Some Glyc It Hot. Lawler, Patrick R; Mora, Samia Circulation research 28051777 2016 Nov 11
Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform. Cong, Yongzheng; Katipamula, Shanta; Trader, Cameron D; Orton, Daniel J; Geng, Tao; Baker, Erin S; Kelly, Ryan T Lab on a chip 27009517 2016 Apr 26
The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates. Khadempour, Lily; Burnum-Johnson, Kristin E; Baker, Erin S; Nicora, Carrie D; Webb-Robertson, Bobbie-Jo M; White 3rd, Richard A; Monroe, Matthew E; Huang, Eric L; Smith, Richard D; Currie, Cameron R Molecular ecology 27696597 2016 Nov
Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future. Barnes, Stephen; Benton, H Paul; Casazza, Krista; Cooper, Sara J; Cui, Xiangqin; Du, Xiuxia; Engler, Jeffrey; Kabarowski, Janusz H; Li, Shuzhao; Pathmasiri, Wimal; Prasain, Jeevan K; Renfrow, Matthew B; Tiwari, Hemant K Journal of mass spectrometry : JMS 28239968 2016 Aug
Computational Modeling of Competitive Metabolism between ω3- and ω6-Polyunsaturated Fatty Acids in Inflammatory Macrophages. Gupta, Shakti; Kihara, Yasuyuki; Maurya, Mano R; Norris, Paul C; Dennis, Edward A; Subramaniam, Shankar The journal of physical chemistry. B 27063350 2016 Aug 25
Impaired 17,20-Lyase Activity in Male Mice Lacking Cytochrome b5 in Leydig Cells. Sondhi, Varun; Owen, Bryn M; Liu, Jiayan; Chomic, Robert; Kliewer, Steven A; Hughes, Beverly A; Arlt, Wiebke; Mangelsdorf, David J; Auchus, Richard J Molecular endocrinology (Baltimore, Md.) 26974035 2016 Apr
Muscle-specific loss of Bmal1 leads to disrupted tissue glucose metabolism and systemic glucose homeostasis. Harfmann, Brianna D; Schroder, Elizabeth A; Kachman, Maureen T; Hodge, Brian A; Zhang, Xiping; Esser, Karyn A Skeletal muscle 27486508 2016
Rescue of Metabolic Alterations in AR113Q Skeletal Muscle by Peripheral Androgen Receptor Gene Silencing. Giorgetti, Elisa; Yu, Zhigang; Chua, Jason P; Shimamura, Ryosuke; Zhao, Lili; Zhu, Fan; Venneti, Sriram; Pennuto, Maria; Guan, Yuanfang; Hung, Gene; Lieberman, Andrew P Cell reports 27681426 2016 Sep 27
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Lipidomic Signature of Progression of Chronic Kidney Disease in the Chronic Renal Insufficiency Cohort. Afshinnia, Farsad; Rajendiran, Thekkelnaycke M; Karnovsky, Alla; Soni, Tanu; Wang, Xue; Xie, Dawei; Yang, Wei; Shafi, Tariq; Weir, Matthew R; He, Jiang; Brecklin, Carolyn S; Rhee, Eugene P; Schelling, Jeffrey R; Ojo, Akinlolu; Feldman, Harold; Michailidis, George; Pennathur, Subramaniam Kidney international reports 28451650 2016 Nov
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Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS. Ma, Yan; Tanaka, Nobuo; Vaniya, Arpana; Kind, Tobias; Fiehn, Oliver Journal of agricultural and food chemistry 26698107 2016 Jan 20
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Catalytic Activities of Tumor-Specific Human Cytochrome P450 CYP2W1 Toward Endogenous Substrates. Zhao, Yan; Wan, Debin; Yang, Jun; Hammock, Bruce D; Ortiz de Montellano, Paul R Drug metabolism and disposition: the biological fate of chemicals 26936974 2016 May
Contemporary views on the genetics of anorexia nervosa. Shih, Pei-an Betty; Woodside, D Blake European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology 26944296 2016 Apr
Plasma amino acid and metabolite signatures tracking diabetes progression in the UCD-T2DM rat model. Piccolo, Brian D; Graham, James L; Stanhope, Kimber L; Fiehn, Oliver; Havel, Peter J; Adams, Sean H American journal of physiology. Endocrinology and metabolism 27094034 2016 Jun 01
Molecular Mechanisms and New Treatment Paradigm for Atrial Fibrillation. Sirish, Padmini; Li, Ning; Timofeyev, Valeriy; Zhang, Xiao-Dong; Wang, Lianguo; Yang, Jun; Lee, Kin Sing Stephen; Bettaieb, Ahmed; Ma, Sin Mei; Lee, Jeong Han; Su, Demetria; Lau, Victor C; Myers, Richard E; Lieu, Deborah K; López, Javier E; Young, J Nilas; Yamoah, Ebenezer N; Haj, Fawaz; Ripplinger, Crystal M; Hammock, Bruce D; Chiamvimonvat, Nipavan Circulation. Arrhythmia and electrophysiology 27162031 2016 May
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Exogenous Fatty Acids Are the Preferred Source of Membrane Lipids in Proliferating Fibroblasts. Yao, Cong-Hui; Fowle-Grider, Ronald; Mahieu, Nathanial G; Liu, Gao-Yuan; Chen, Ying-Jr; Wang, Rencheng; Singh, Manmilan; Potter, Gregory S; Gross, Richard W; Schaefer, Jacob; Johnson, Stephen L; Patti, Gary J Cell chemical biology 27049668 2016 04 21
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Testing the role of myeloid cell glucose flux in inflammation and atherosclerosis. Nishizawa, Tomohiro; Kanter, Jenny E; Kramer, Farah; Barnhart, Shelley; Shen, Xia; Vivekanandan-Giri, Anuradha; Wall, Valerie Z; Kowitz, Jason; Devaraj, Sridevi; O'Brien, Kevin D; Pennathur, Subramaniam; Tang, Jingjing; Miyaoka, Robert S; Raines, Elaine W; Bornfeldt, Karin E Cell reports 24726364 2014 Apr 24
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Urinary metabolomics (GC-MS) reveals that low and high birth weight infants share elevated inositol concentrations at birth. Barberini, Luigi; Noto, Antonio; Fattuoni, Claudia; Grapov, Dmitry; Casanova, Andrea; Fenu, Gianni; Gaviano, Mauro; Carboni, Roberta; Ottonello, Giovanni; Crisafulli, Maurizio; Fanos, Vassilios; Dessì, Angelica The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 25284173 2014 Oct
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Profiling thiol metabolites and quantification of cellular glutathione using FT-ICR-MS spectrometry. Gori, Sadakatali S; Lorkiewicz, Pawel; Ehringer, Daniel S; Belshoff, Alex C; Higashi, Richard M; Fan, Teresa W-M; Nantz, Michael H Analytical and bioanalytical chemistry 24858467 2014 Jul
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Modulation of blood oxylipin levels by long-chain omega-3 fatty acid supplementation in hyper- and normolipidemic men. Schuchardt, Jan Philipp; Schmidt, Simone; Kressel, Gaby; Willenberg, Ina; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils Helge Prostaglandins, leukotrienes, and essential fatty acids 24411718 2014 Feb-Mar
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The urinary metabolomics profile of an Italian autistic children population and their unaffected siblings. Noto, Antonio; Fanos, Vassilios; Barberini, Luigi; Grapov, Dmitry; Fattuoni, Claudia; Zaffanello, Marco; Casanova, Andrea; Fenu, Gianni; De Giacomo, Andrea; De Angelis, Maria; Moretti, Corrado; Papoff, Paola; Ditonno, Raffaella; Francavilla, Ruggiero The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 25284177 2014 Oct
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Loss of FBP1 by Snail-mediated repression provides metabolic advantages in basal-like breast cancer. Dong, Chenfang; Yuan, Tingting; Wu, Yadi; Wang, Yifan; Fan, Teresa W M; Miriyala, Sumitra; Lin, Yiwei; Yao, Jun; Shi, Jian; Kang, Tiebang; Lorkiewicz, Pawel; St Clair, Daret; Hung, Mien-Chie; Evers, B Mark; Zhou, Binhua P Cancer cell 23453623 2013 Mar 18
Metabolome response to glucose in the β-cell line INS-1 832/13. Lorenz, Matthew A; El Azzouny, Mahmoud A; Kennedy, Robert T; Burant, Charles F The Journal of biological chemistry 23426361 2013 Apr 12
Niemann-pick type C2 deficiency in human fibroblasts confers robust and selective activation of prostaglandin E2 biosynthesis. Frolov, Andrey; Dong, Hua; Jiang, Min; Yang, Lihua; Cook, Erik C; Matnani, Rahul; Hammock, Bruce D; Crofford, Leslie J The Journal of biological chemistry 23814065 2013 Aug 16
LipidBlast in silico tandem mass spectrometry database for lipid identification. Kind, Tobias; Liu, Kwang-Hyeon; Lee, Do Yup; DeFelice, Brian; Meissen, John K; Fiehn, Oliver Nature methods 23817071 2013 Aug
Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus. Smilowitz, Jennifer T; Totten, Sarah M; Huang, Jincui; Grapov, Dmitry; Durham, Holiday A; Lammi-Keefe, Carol J; Lebrilla, Carlito; German, J Bruce The Journal of nutrition 24047700 2013 Dec
Anti-inflammatory properties of prostaglandin E2: deletion of microsomal prostaglandin E synthase-1 exacerbates non-immune inflammatory arthritis in mice. Frolov, Andrey; Yang, Lihua; Dong, Hua; Hammock, Bruce D; Crofford, Leslie J Prostaglandins, leukotrienes, and essential fatty acids 24055573 2013 Oct
Individual variation in lipidomic profiles of healthy subjects in response to omega-3 Fatty acids. Nording, Malin L; Yang, Jun; Georgi, Katrin; Hegedus Karbowski, Christine; German, J Bruce; Weiss, Robert H; Hogg, Ronald J; Trygg, Johan; Hammock, Bruce D; Zivkovic, Angela M PloS one 24204640 2013
Soluble epoxide hydrolase deficiency inhibits dextran sulfate sodium-induced colitis and carcinogenesis in mice. Zhang, Wanying; Li, Haonan; Dong, Hua; Liao, Jie; Hammock, Bruce D; Yang, Guang-Yu Anticancer research 24324059 2013 Dec
The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors. Dougherty, Joseph D; Maloney, Susan E; Wozniak, David F; Rieger, Michael A; Sonnenblick, Lisa; Coppola, Giovanni; Mahieu, Nathaniel G; Zhang, Juliet; Cai, Jinlu; Patti, Gary J; Abrahams, Brett S; Geschwind, Daniel H; Heintz, Nathaniel The Journal of neuroscience : the official journal of the Society for Neuroscience 23407934 2013 Feb 13
Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry. Crowell, Kevin L; Baker, Erin S; Payne, Samuel H; Ibrahim, Yehia M; Monroe, Matthew E; Slysz, Gordon W; LaMarche, Brian L; Petyuk, Vladislav A; Piehowski, Paul D; Danielson 3rd, William F; Anderson, Gordon A; Smith, Richard D International journal of mass spectrometry 25089116 2013 Nov 15
Decreased glycolytic and tricarboxylic acid cycle intermediates coincide with peripheral nervous system oxidative stress in a murine model of type 2 diabetes. Hinder, Lucy M; Vivekanandan-Giri, Anuradha; McLean, Lisa L; Pennathur, Subramaniam; Feldman, Eva L The Journal of endocrinology 23086140 2013 Jan
HR-MAS NMR tissue metabolomic signatures cross-validated by mass spectrometry distinguish bladder cancer from benign disease. Tripathi, Pratima; Somashekar, Bagganahalli S; Ponnusamy, M; Gursky, Amy; Dailey, Stephen; Kunju, Priya; Lee, Cheryl T; Chinnaiyan, Arul M; Rajendiran, Thekkelnaycke M; Ramamoorthy, Ayyalusamy Journal of proteome research 23731241 2013 Jul 5
Treatment of mice with 2,3,7,8-Tetrachlorodibenzo-p-dioxin markedly increases the levels of a number of cytochrome P450 metabolites of omega-3 polyunsaturated fatty acids in the liver and lung. Yang, Jun; Solaimani, Parrisa; Dong, Hua; Hammock, Bruce; Hankinson, Oliver The Journal of toxicological sciences 24213002 2013
Isotopic ratio outlier analysis global metabolomics of Caenorhabditis elegans. Stupp, Gregory S; Clendinen, Chaevien S; Ajredini, Ramadan; Szewc, Mark A; Garrett, Timothy; Menger, Robert F; Yost, Richard A; Beecher, Chris; Edison, Arthur S Analytical chemistry 24274725 2013 Dec 17
Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database. Zhu, Zheng-Jiang; Schultz, Andrew W; Wang, Junhua; Johnson, Caroline H; Yannone, Steven M; Patti, Gary J; Siuzdak, Gary Nature protocols 23391889 2013 Mar
Metabolomics: an essential tool to understand the function of peroxisome proliferator-activated receptor alpha. Montanez, Jessica E; Peters, Jeffrey M; Correll, Jared B; Gonzalez, Frank J; Patterson, Andrew D Toxicologic pathology 23197196 2013 Feb
Stable isotope- and mass spectrometry-based metabolomics as tools in drug metabolism: a study expanding tempol pharmacology. Li, Fei; Pang, Xiaoyan; Krausz, Kristopher W; Jiang, Changtao; Chen, Chi; Cook, John A; Krishna, Murali C; Mitchell, James B; Gonzalez, Frank J; Patterson, Andrew D Journal of proteome research 23301521 2013 Mar 1
High density lipoprotein is targeted for oxidation by myeloperoxidase in rheumatoid arthritis. Vivekanandan-Giri, Anuradha; Slocum, Jessica L; Byun, Jaeman; Tang, Chongren; Sands, Robin L; Gillespie, Brenda W; Heinecke, Jay W; Saran, Rajiv; Kaplan, Mariana J; Pennathur, Subramaniam Annals of the rheumatic diseases 23313808 2013 Oct
Metabolite profile analysis reveals functional effects of 28-day vitamin B-6 restriction on one-carbon metabolism and tryptophan catabolic pathways in healthy men and women. da Silva, Vanessa R; Rios-Avila, Luisa; Lamers, Yvonne; Ralat, Maria A; Midttun, Øivind; Quinlivan, Eoin P; Garrett, Timothy J; Coats, Bonnie; Shankar, Meena N; Percival, Susan S; Chi, Yueh-Yun; Muller, Keith E; Ueland, Per Magne; Stacpoole, Peter W; Gregory 3rd, Jesse F The Journal of nutrition 23966327 2013 Nov
An accelerated workflow for untargeted metabolomics using the METLIN database. Tautenhahn, Ralf; Cho, Kevin; Uritboonthai, Winnie; Zhu, Zhengjiang; Patti, Gary J; Siuzdak, Gary Nature biotechnology 22965049 2012 Sep
Maximizing the value of metabolomic data. Goeddel, L C; Patti, G J Bioanalysis 23046261 2012 Sep
Association of plasma ω-3 and ω-6 lipids with burden of disease measures in bipolar subjects. Evans, Simon J; Kamali, Masoud; Prossin, Alan R; Harrington, Gloria J; Ellingrod, Vicki L; McInnis, Melvin G; Burant, Charles F Journal of psychiatric research 22884424 2012 Nov
Mammalian target of rapamycin regulates neutrophil extracellular trap formation via induction of hypoxia-inducible factor 1 α. McInturff, Alison M; Cody, Mark J; Elliott, Elizabeth A; Glenn, Jared W; Rowley, Jesse W; Rondina, Matthew T; Yost, Christian C Blood 22919032 2012 Oct 11
XCMS Online: a web-based platform to process untargeted metabolomic data. Tautenhahn, Ralf; Patti, Gary J; Rinehart, Duane; Siuzdak, Gary Analytical chemistry 22533540 2012 Jun 5
A short-term diet and exercise intervention ameliorates inflammation and markers of metabolic health in overweight/obese children. Izadpanah, Ali; Barnard, R James; Almeda, Anna Jane E; Baldwin, Gayle C; Bridges, Sydney A; Shellman, Erin R; Burant, Charles F; Roberts, Christian K American journal of physiology. Endocrinology and metabolism 22713506 2012 Aug 15
A Carbonyl Capture Approach for Profiling Oxidized Metabolites in Cell Extracts. Mattingly, Stephanie J; Xu, Tao; Nantz, Michael H; Higashi, Richard M; Fan, Teresa W-M Metabolomics : Official journal of the Metabolomic Society 23175637 2012
Platelet mRNA: the meaning behind the message. Rowley, Jesse W; Schwertz, Hansjörg; Weyrich, Andrew S Current opinion in hematology 22814651 2012 Sep
Addressing the current bottlenecks of metabolomics: Isotopic Ratio Outlier Analysis™, an isotopic-labeling technique for accurate biochemical profiling. de Jong, Felice A; Beecher, Chris Bioanalysis 23046270 2012 Sep

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