NIH Director's Early Independence Award
NIH Director's Early Independence Award
Program Publications
Publications Search by Program
Search Result
The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date | PubMedLink |
|---|---|---|---|---|---|---|
| Theta-burst direct electrical stimulation remodels human brain networks. | Huang Y, Zelmann R, Hadar P, Dezha-Peralta J, Richardson RM, Williams ZM, Cash SS, Keller CJ, Paulk AC | Nature communications | 39143083 | Nat Commun | 2024 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/39143083 |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 36711689 | bioRxiv | 2023 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/36711689 |
| Scalp EEG predicts intracranial brain activity in humans. | Subramanian AK, Talbot A, Kim N, Parmigiani S, Cline CC, Solomon EA, Hartford JW, Huang Y, Mikulan E, Zauli FM, d'Orio P, Cardinale F, Mannini F, Pigorini A, Keller CJ | bioRxiv : the preprint server for biology | 40291696 | bioRxiv | 2025 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/40291696 |
| Sensory Entrained TMS (seTMS) Enhances Motor Cortex Excitability. | Ross JM, Forman L, Gogulski J, Hassan U, Cline CC, Parmigiani S, Truong J, Hartford JW, Chen NF, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | Human brain mapping | 40622189 | Hum Brain Mapp | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40622189 |
| Dorsolateral prefrontal cortex TMS evokes responses in the subgenual anterior cingulate cortex: Intracranial EEG evidence from two human cases. | Trapp NT, Liu X, Li Z, Bruss J, Keller CJ, Boes AD, Jiang J | Brain stimulation | 40516648 | Brain Stimul | 2025 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/40516648 |
| Neural effects of TMS trains on the human prefrontal cortex. | Ross JM, Cline CC, Sarkar M, Truong J, Keller CJ | bioRxiv : the preprint server for biology | 36778457 | bioRxiv | 2023 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/36778457 |
| Experimental suppression of transcranial magnetic stimulation-electroencephalography sensory potentials. | Ross JM, Sarkar M, Keller CJ | Human brain mapping | 35770956 | Hum Brain Mapp | 2022 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/35770956 |
| Reliability and Validity of Transcranial Magnetic Stimulation-Electroencephalography Biomarkers. | Parmigiani S, Ross JM, Cline CC, Minasi CB, Gogulski J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36894435 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36894435 |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology | 38865780 | Clin Neurophysiol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38865780 |
| Sensory Entrained TMS (seTMS) enhances motor cortex excitability. | Ross JM, Forman L, Gogulski J, Hassan U, Cline CC, Parmigiani S, Truong J, Hartford JW, Chen NF, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | bioRxiv : the preprint server for biology | 39651225 | bioRxiv | 2024 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/39651225 |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | Cerebral cortex (New York, N.Y. : 1991) | 38596882 | Cereb Cortex | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38596882 |
| Real-time optimization to enhance noninvasive cortical excitability assessment in the human dorsolateral prefrontal cortex. | Parmigiani S, Cline CC, Sarkar M, Forman L, Truong J, Ross JM, Gogulski J, Keller CJ | bioRxiv : the preprint server for biology | 38853941 | bioRxiv | 2024 May 31 | https://www.ncbi.nlm.nih.gov/pubmed/38853941 |
| Generative Principal Component Regression via Variational Inference. | Talbot A, Keller CJ, Trevino C, Carlson DE, Dammer EB, Johnson ECB, Wingo TS, Kotlar AV | IEEE transactions on signal processing : a publication of the IEEE Signal Processing Society | 42222061 | IEEE Trans Signal Process | 2026 | https://www.ncbi.nlm.nih.gov/pubmed/42222061 |
| A practical preprocessing pipeline for concurrent TMS-iEEG: Critical steps and methodological considerations. | Li Z, Liu X, Tatz JR, Tsang EW, Hassan U, Wang JB, Keller CJ, Trapp NT, Boes AD, Jiang J | NeuroImage | 41448514 | Neuroimage | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41448514 |
| Direct cortical stimulation induces short-term plasticity of neural oscillations in humans. | Munot S, Kim N, Huang Y, Keller CJ | bioRxiv : the preprint server for biology | 38014071 | bioRxiv | 2023 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/38014071 |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 37732239 | bioRxiv | 2023 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/37732239 |
| Sensory Entrained TMS (seTMS) enhances motor cortex plasticity. | Ross JM, Forman L, Hassan U, Gogulski J, Truong J, Cline CC, Parmigiani S, Chen NF, Hartford JW, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | bioRxiv : the preprint server for biology | 40777444 | bioRxiv | 2025 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/40777444 |
| Editorial: Inter- and Intra-subject Variability in Brain Imaging and Decoding. | Wei CS, Keller CJ, Li J, Lin YP, Nakanishi M, Wagner J, Wu W, Zhang Y, Jung TP | Frontiers in computational neuroscience | 34912203 | Front Comput Neurosci | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34912203 |
| Dorsolateral prefrontal cortex TMS evokes responses in the subgenual anterior cingulate cortex: Evidence from human intracranial EEG. | Trapp NT, Liu X, Li Z, Bruss J, Keller CJ, Boes AD, Jiang J | bioRxiv : the preprint server for biology | 39763715 | bioRxiv | 2024 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/39763715 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | Brain stimulation | 38821396 | Brain Stimul | 2024 May-Jun | https://www.ncbi.nlm.nih.gov/pubmed/38821396 |
| Simultaneous invasive and non-invasive recordings in humans: A novel Rosetta stone for deciphering brain activity. | Pigorini A, Avanzini P, Barborica A, Bénar CG, David O, Farisco M, Keller CJ, Manfridi A, Mikulan E, Paulk AC, Roehri N, Subramanian A, Vulliémoz S, Zelmann R | Journal of neuroscience methods | 38734149 | J Neurosci Methods | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38734149 |
| Noninvasive profiling of input-output excitability curves in human prefrontal cortex. | Chen NF, Hassan U, Ross JM, Forman L, Hartford JW, Gogulski J, Parmigiani S, Truong J, Keller CJ, Cline CC | bioRxiv : the preprint server for biology | 41040393 | bioRxiv | 2025 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/41040393 |
| Global connectivity and local excitability changes underlie antidepressant effects of repetitive transcranial magnetic stimulation. | Eshel N, Keller CJ, Wu W, Jiang J, Mills-Finnerty C, Huemer J, Wright R, Fonzo GA, Ichikawa N, Carreon D, Wong M, Yee A, Shpigel E, Guo Y, McTeague L, Maron-Katz A, Etkin A | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32053828 | Neuropsychopharmacology | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32053828 |
| Personalized Repetitive Transcranial Magnetic Stimulation for Depression. | Gogulski J, Ross JM, Talbot A, Cline CC, Donati FL, Munot S, Kim N, Gibbs C, Bastin N, Yang J, Minasi C, Sarkar M, Truong J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36792455 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36792455 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | bioRxiv : the preprint server for biology | 37645954 | bioRxiv | 2023 Nov 19 | https://www.ncbi.nlm.nih.gov/pubmed/37645954 |
| Distinct neural temporal architectures encode rapid social expressions and sustained internal mood states. | Kakusa B, Gopal JR, Forman L, Hartford JW, Brennan T, Pantis S, Persad AR, Cline CC, Buch VP, Parvizi J, Huang Y, Keller CJ | bioRxiv : the preprint server for biology | 41446192 | bioRxiv | 2025 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/41446192 |
| A Practical Preprocessing Pipeline for Concurrent TMS-iEEG: Critical Steps and Methodological Considerations. | Li Z, Liu X, Tatz J, Hassan U, Wang JB, Keller CJ, Trapp NT, Boes AD, Jiang J | bioRxiv : the preprint server for biology | 40894703 | bioRxiv | 2025 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/40894703 |
| Endocrine disrupting chemicals and female sexual health: An emerging research priority. | Bond J, Schildroth S, Wise LA | Environmental research | 40897225 | Environ Res | 2025 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/40897225 |
| Consistency of Adolescent Self-Report of Age at First Engagement in Five Sexual Behaviors. | Bond JC, Ybarra ML, Ranker LR, Nelson KM | Journal of sex research | 41587090 | J Sex Res | 2026 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41587090 |
| Programmed ribosomal frameshifting during PLEKHM2 mRNA decoding generates a constitutively active proteoform that supports myocardial function. | Loughran G, De Pace R, Ding N, Zhang J, Jungreis I, Carancini G, Mudge JM, Wang J, Kellis M, Atkins JF, Baranov PV, Firth AE, Li X, Bonifacino JS, Khan YA | Science advances | 41134891 | Sci Adv | 2025 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/41134891 |
| High-throughput measurements of protein domain functions using magnetic separation. | Thurm AR, Tycko J, Ludwig CH, Ragheb M, DelRosso N, Hess GT, Bassik MC, Bintu L | Nature protocols | 42380603 | Nat Protoc | 2026 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/42380603 |
| RNA ensembles from in vitro to in vivo: Toward predictive models of RNA cellular function. | Li CY, Sandhu S, Ken ML | Current opinion in structural biology | 39401473 | Curr Opin Struct Biol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39401473 |
| Integrative In Silico and In Vitro Screening of Low Molecular Weight Compounds Targeting SARS-CoV-2 RNA Elements. | Toews S, Ceylan B, Wacker A, Ken M, Schwalbe H | Chembiochem : a European journal of chemical biology | 41317062 | Chembiochem | 2025 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/41317062 |
| Highlights of the 2023 Fetal, Infant, and Toddler Neuroimaging Group annual meeting. | Sylvester CM, Korom M, Camacho MC, Shultz S, Arichi T | Developmental cognitive neuroscience | 40447482 | Dev Cogn Neurosci | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40447482 |
| The Cognitive-Affective Social Processing and Emotion Regulation (CASPER) model. | Camacho MC, Deshpande E, Perino MT | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 40908288 | Neuropsychopharmacology | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/40908288 |
| Enhancer activation from transposable elements in extrachromosomal DNA. | Kraft K, Murphy SE, Jones MG, Shi Q, Bhargava-Shah A, Luong C, Hung KL, He BJ, Li R, Kuk Park S, Montgomery MT, Weiser NE, Wang Y, Luebeck J, Bafna V, Boeke JD, Mischel PS, Boettiger AN, Chang HY | bioRxiv : the preprint server for biology | 39282372 | bioRxiv | 2025 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/39282372 |
| Enhancer activation from transposable elements in extrachromosomal DNA. | Kraft K, Murphy SE, Jones MG, Shi Q, Bhargava-Shah A, Luong C, Hung KL, He BJ, Li R, Park SK, Montgomery MT, Weiser NE, Wang Y, Luebeck J, Bafna V, Boeke JD, Mischel PS, Boettiger AN, Chang HY | Nature cell biology | 41120733 | Nat Cell Biol | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/41120733 |
| Combining Sampling Methods with Attractor Dynamics in Spiking Models of Head-Direction Systems. | Pjanovic V, Zavatone-Veth J, Masset P, Keemink S, Nardin M | bioRxiv : the preprint server for biology | 40060526 | bioRxiv | 2025 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/40060526 |
| Simultaneous detection and estimation in olfactory sensing. | Jiang C, He MY, Murthy VN, Pehlevan C, Zavatone-Veth JA, Masset P | bioRxiv : the preprint server for biology | 41279341 | bioRxiv | 2025 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/41279341 |
| Convergent motifs of early olfactory processing are recapitulated by layer-wise efficient coding. | Del Castillo JCF, Pashakhanloo F, Murthy VN, Zavatone-Veth JA | Proceedings of the National Academy of Sciences of the United States of America | 41875150 | Proc Natl Acad Sci U S A | 2026 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/41875150 |
| A note on the dynamics of extended-context disordered kinetic spin models. | Zavatone-Veth JA, Pehlevan C | Journal of physics. A, Mathematical and theoretical | 41583832 | J Phys A Math Theor | 2026 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/41583832 |
| Summary statistics of learning link changing neural representations to behavior. | Zavatone-Veth JA, Bordelon B, Pehlevan C | Frontiers in neural circuits | 40951768 | Front Neural Circuits | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40951768 |
| Dynamically Learning to Integrate in Recurrent Neural Networks. | Bordelon B, Cotler J, Pehlevan C, Zavatone-Veth JA | ArXiv | 40196143 | ArXiv | 2025 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/40196143 |
| Convergent motifs of early olfactory processing are recapitulated by layer-wise efficient coding. | Del Castillo JCF, Pashakhanloo F, Murthy VN, Zavatone-Veth JA | bioRxiv : the preprint server for biology | 40950075 | bioRxiv | 2025 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/40950075 |
| Summary statistics of learning link changing neural representations to behavior. | Zavatone-Veth JA, Bordelon B, Pehlevan C | ArXiv | 40313661 | ArXiv | 2025 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/40313661 |
| Genome-wide screening reveals producer-cell modifications that improve virus-like particle production and delivery potency. | Ly D, Jang H, Goel A, Singh A, Raguram A | bioRxiv : the preprint server for biology | 41684938 | bioRxiv | 2026 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/41684938 |
| Genome-wide screening reveals producer-cell modifications that improve virus-like particle production and delivery potency. | Ly D, Jang H, Goel A, Singh A, Raguram A | Nature communications | 42031757 | Nat Commun | 2026 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/42031757 |
| Comprehensive Curation and Harmonization of Small-Molecule MS/MS Libraries in Spectraverse. | Gupta V, Qiang H, Chung HH, Herbst E, Skinnider MA | Analytical chemistry | 41582521 | Anal Chem | 2026 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/41582521 |
| Mapping the mammalian dark metabolome by in vivo isotope tracing. | MacArthur MR, Raeber J, Lu W, Qiang H, Schueppert AV, Ayres LB, Cordova RA, Neinast MD, Leiva E, Pham VN, AbuSalim JE, Jankowski CSR, Samarah LZ, Roichman A, Peace CG, Ivanov DG, Renzo GL, Oschmann AM, Ayroles JF, Mitchell SJ, Xing X, Olszewski K, Kim H, Rabinowitz JD, Skinnider MA | bioRxiv : the preprint server for biology | 41959330 | bioRxiv | 2026 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/41959330 |
| Multidimensional ADHD Symptom Profiles: Associations with Adverse Childhood Experiences. | Rodriguez VJ, Basurto KS, Finley JA, Liu Q, Khalid E, Halliburton AM, Tse PKY, Resch ZJ, Soble JR, Ulrich DM | Archives of clinical neuropsychology : the official journal of the National Academy of Neuropsychologists | 38916192 | Arch Clin Neuropsychol | 2025 Jan 21 | https://www.ncbi.nlm.nih.gov/pubmed/38916192 |
| Psychometrics of the Children's Report of Parental Behavior Inventory among caregivers and youth with HIV. | Rodriguez VJ, Kendall AD, Cohen MH, Nsanzimana S, Ingabire C, Remera E, Donenberg G | Journal of family psychology : JFP : journal of the Division of Family Psychology of the American Psychological Association (Division 43) | 38451718 | J Fam Psychol | 2024 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/38451718 |
| Family Influences on Antiretroviral Therapy Adherence in Youth with HIV in the United States: A Systematic Review. | Rodriguez VJ, Gessert M, Guerra A | AIDS and behavior | 40289039 | AIDS Behav | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40289039 |
| Parent discrimination clusters and pediatric health in a national survey: The modifying effect of parenting. | Rodriguez VJ, La Barrie DL | SSM - population health | 40034937 | SSM Popul Health | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40034937 |
| Disentangling the Heterogeneity in Minority Stress: A Data Mining Approach. | Liu Q, Rodriguez VJ, Nestor BA, Trichtinger LA, Chandler C, Friedman MR | Archives of sexual behavior | 40940595 | Arch Sex Behav | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40940595 |
| AI Chatbots for Mental Health Self-Management: Lived Experience-Centered Qualitative Study. | Yoo DW, Shi JM, Rodriguez VJ, Saha K | JMIR mental health | 41926675 | JMIR Ment Health | 2026 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/41926675 |
| Parental depressive symptoms and child psychopathology: Indirect effects of parenting-specific emotion regulation and emotion socialization. | Rodriguez VJ, Zegarac MC, Brumbaugh TS, La Barrie DL, Terry JB, Shaffer A | Family relations | 40452872 | Fam Relat | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40452872 |
| Digital Hostility Toward LGBTQIA+ Research Recruitment on Social Media Using Topic Modeling and Sentiment Analysis of Facebook Comments: Quantitative Content Analysis Study. | Rodriguez VJ, Peterson B, Benhayoun A, Liu Q | Journal of medical Internet research | 40921069 | J Med Internet Res | 2025 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/40921069 |
| Rethinking parenting: A function-based framework for understanding caregiving across contexts. | Rodriguez VJ, Kang S, Liu Q | Developmental psychology | 42043430 | Dev Psychol | 2026 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/42043430 |
| Assessing parenting in racially and ethnically diverse families: A lack of measurement equivalence. | Rodriguez VJ, Cadet GJ, Sisitsky M, Cooley C, Acosta J, Coles E, Charity-Parker B, Walters A, Shaffer A, Parent J | Journal of family psychology : JFP : journal of the Division of Family Psychology of the American Psychological Association (Division 43) | 37141011 | J Fam Psychol | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37141011 |
| Navigating Academic Brokering: Enhancing Belongingness in Scientific Training Programs. | Garcia AP, Perez M, Galvan T, Rodriguez VJ, La Barrie DL | Developmental psychobiology | 41024650 | Dev Psychobiol | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/41024650 |
| The 3,4-methylenedioxymethamphetamine enhances early visual processing for salient socio-emotional stimuli. | Haggarty CJ, Bershad AK, Kumar MK, Lee R, de Wit H | The European journal of neuroscience | 38637983 | Eur J Neurosci | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38637983 |
| Altered States and Social Bonds: Effects of MDMA and Serotonergic Psychedelics on Social Behavior as a Mechanism Underlying Substance-Assisted Therapy. | Schmid Y, Bershad AK | Biological psychiatry. Cognitive neuroscience and neuroimaging | 38341085 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38341085 |
| For those with schizophrenia, does cannabidiol make cannabis use safer? | Bershad AK | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 40859007 | Neuropsychopharmacology | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40859007 |
| MDMA enhances positive affective responses to social feedback. | Bershad AK, Hsu DT, de Wit H | Journal of psychopharmacology (Oxford, England) | 38279662 | J Psychopharmacol | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38279662 |
| Quantized multi-task learning for context-specific representations of gene network dynamics. | Chen H, Venkatesh MS, Ortega JG, Mahesh SV, Nandi TN, Madduri RK, Pelka K, Theodoris CV | bioRxiv : the preprint server for biology | 39229018 | bioRxiv | 2024 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/39229018 |
| Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology. | Chen H, Venkatesh MS, Gόmez Ortega J, Mahesh SV, Nandi TN, Madduri RK, Pelka K, Theodoris CV | Nature computational science | 41896605 | Nat Comput Sci | 2026 May | https://www.ncbi.nlm.nih.gov/pubmed/41896605 |
| Multiplex generation and single cell analysis of structural variants in a mammalian genome. | Pinglay S, Lalanne JB, Daza RM, Koeppel J, Li X, Lee DS, Shendure J | bioRxiv : the preprint server for biology | 38405830 | bioRxiv | 2024 Feb 12 | https://www.ncbi.nlm.nih.gov/pubmed/38405830 |
| Mammalian genome writing: Unlocking new length scales for genome engineering. | Pinglay S, Atwater JT, Brosh R, Shendure J, Maurano MT, Boeke JD | Cell | 41576918 | Cell | 2026 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/41576918 |
| Multiplex generation and single-cell analysis of structural variants in mammalian genomes. | Pinglay S, Lalanne JB, Daza RM, Kottapalli S, Quaisar F, Koeppel J, Garge RK, Li X, Lee DS, Shendure J | Science (New York, N.Y.) | 39883753 | Science | 2025 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/39883753 |
| The prototypical interferonopathy: Aicardi-Goutières syndrome from bedside to bench. | Hofer MJ, Modesti N, Coufal NG, Wang Q, Sase S, Miner JJ, Vanderver A, Bennett ML | Immunological reviews | 39473130 | Immunol Rev | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39473130 |
| Direct microglia replacement reveals pathologic and therapeutic contributions of brain macrophages to a monogenic neurological disease. | Aisenberg WH, O'Brien CA, Sangster M, Yaqoob F, Zhang Y, Temsamrit B, Thom S, Gosse L, Chaluvadi S, Elfayomi B, Lee G, Polam V, Levitt EM, Liu G, Lombroso SI, Nemec KM, Clowry G, Nieves C, Rawat P, Church E, Martinez D, Shoffler C, Kancheva D, Petucci C, Taylor D, Kofler J, Erskine D, Movahedi K, Bennett ML, Bennett FC | Immunity | 40311614 | Immunity | 2025 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/40311614 |
| Basic Microglial Functions and How They Go Awry in Neurodegenerative Disease. | McKinney JE, Bennett ML, Bennett FC | Annual review of pathology | 41587891 | Annu Rev Pathol | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41587891 |
| Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières syndrome neuropathology. | Nemec KM, Uy G, Chaluvadi VS, Purnell FS, Elfayoumi B, Byerly L, O'Reilly ML, O'Brien CA, Aisenberg WH, Lombroso SI, Guo X, Blank N, Oon CH, Yaqoob F, Temsamrit B, Rawat P, Thaiss CA, Bailis W, Williamson AP, Wang Q, Bennett ML, Bennett FC | eLife | 41589671 | Elife | 2026 Jan 27 | https://www.ncbi.nlm.nih.gov/pubmed/41589671 |
| Microglia replacement by peripheral delivery of CSF1R inhibitor-resistant hematopoietic cells. | Lombroso SI, Church EI, Anderson RN, O'Brien CA, Zhu Y, Dar AA, Purnell FS, Levitt EM, Temsamrit B, Yaqoob F, Aisenberg WH, Davis M, Elfayoumi B, Chaluvadi S, Nemec KM, Axsom J, Shapiro DA, Oon CH, Chadarevian JP, Assenmacher CA, De Arcangeli S, Banerjee E, Shukla S, Davtyan H, Bailis W, Hunter CA, Blurton-Jones M, Bennett ML, Haney MS, Bennett FC | Molecular therapy : the journal of the American Society of Gene Therapy | 41232525 | Mol Ther | 2026 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/41232525 |
| Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières Syndrome neuropathology. | Nemec KM, Uy G, Chaluvadi VS, Purnell FS, Elfayoumi B, Byerly L, O'Reilly ML, O'Brien CA, Aisenberg WH, Lombroso SI, Guo X, Blank N, Oon CH, Yaqoob F, Temsamrit B, Rawat P, Thaiss CA, Bailis W, Williamson AP, Wang Q, Bennett ML, Bennett FC | bioRxiv : the preprint server for biology | 39345609 | bioRxiv | 2025 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/39345609 |
| Neonatal microglia replacement in mice modulates seizure severity in adulthood. | O'Brien CA, Delcy SAS, Shukla S, Levitt EM, Cohen AS, Bennett ML, Bennett FC | Molecular therapy : the journal of the American Society of Gene Therapy | 40873033 | Mol Ther | 2025 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/40873033 |
| Targeting DNA-LNPs to Endothelial Cells Improves Expression Magnitude, Duration, and Specificity. | Marzolini N, Brysgel TV, Rahman RJ, Essien EO, Nwe SY, Wu J, Majumder A, Patel MN, Tiwari S, Espy CL, Dong F, Santos-De León SA, Shah A, Shuvaev VV, Hood ED, Chase LS, Weissman D, Katzen JB, Frank DB, Bennett ML, Marcos-Contreras OA, Myerson JW, Muzykantov VR, Reyes-Esteves S, Brenner JS | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 41556437 | Adv Sci (Weinh) | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41556437 |
| ComBatLS: A location- and scale-preserving method for multi-site image harmonization. | Gardner M, Shinohara RT, Bethlehem RAI, Romero-Garcia R, Warrier V, Dorfschmidt L, Lifespan Brain Chart Consortium, Shanmugan S, Thompson P, Seidlitz J, Alexander-Bloch AF, Chen AA | bioRxiv : the preprint server for biology | 39131292 | bioRxiv | 2024 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/39131292 |
| Generalizable Links Between Borderline Personality Traits and Functional Connectivity. | Shafiei G, Keller AS, Bertolero M, Shanmugan S, Bassett DS, Chen AA, Covitz S, Houghton A, Luo A, Mehta K, Salo T, Shinohara RT, Fair D, Hallquist MN, Satterthwaite TD | Biological psychiatry | 38460580 | Biol Psychiatry | 2024 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/38460580 |
| Reproducible sex differences in personalised functional network topography in youth. | Keller AS, Sun KY, Francisco A, Robinson H, Beydler E, Bassett DS, Cieslak M, Cui Z, Davatzikos C, Fan Y, Gardner M, Kishton R, Kornfield SL, Larsen B, Li H, Linder I, Pines A, Pritschet L, Raznahan A, Roalf DR, Seidlitz J, Shafiei G, Shinohara RT, White LK, Wolf DH, Alexander-Bloch A, Satterthwaite TD, Shanmugan S | The British journal of psychiatry : the journal of mental science | 40536230 | Br J Psychiatry | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40536230 |
| Toward personalized clinical interventions for perinatal depression: Leveraging precision functional mapping. | Pritschet L, Beydler E, Shanmugan S | Science advances | 40043108 | Sci Adv | 2025 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/40043108 |
| An open, fully-processed data resource for studying mood and sleep variability in the developing brain. | Brook JBH, Salo T, Luo AC, Bagautdinova J, Rush S, Alexander-Bloch AF, Baller EB, Calkins ME, Cieslak M, Cooper EC, Detre JA, Elliot MA, Fair DA, Freedman P, Gehrman PR, Gur RC, Gur RE, Klein A, Laney N, Laumann TO, Mehta K, Merikangas K, Milham MP, Mitchell JA, Moore TM, Nelson SM, Ruparel K, Sevchik BL, Shanmugan S, Shou H, Taso M, White LK, Wolf DH, Tisdall MD, Roalf DR, Satterthwaite TD | bioRxiv : the preprint server for biology | 40463267 | bioRxiv | 2025 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/40463267 |
| Reproducible Sex Differences in Personalized Functional Network Topography in Youth. | Keller AS, Sun KY, Francisco A, Robinson H, Beydler E, Bassett DS, Cieslak M, Cui Z, Davatzikos C, Fan Y, Gardner M, Kishton R, Kornfield SL, Larsen B, Li H, Linder I, Pines A, Pritschet L, Raznahan A, Roalf DR, Seidlitz J, Shafiei G, Shinohara RT, Wolf DH, Alexander-Bloch A, Satterthwaite TD, Shanmugan S | bioRxiv : the preprint server for biology | 39386637 | bioRxiv | 2024 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/39386637 |
| ComBatLS: A Location- and Scale-Preserving Method for Multi-Site Image Harmonization. | Gardner M, Shinohara RT, Bethlehem RAI, Romero-Garcia R, Warrier V, Dorfschmidt L, Lifespan Brain Chart Consortium, Shanmugan S, Thompson P, Seidlitz J, Alexander-Bloch AF, Chen AA | Human brain mapping | 40497521 | Hum Brain Mapp | 2025 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/40497521 |
| Evidence for missed cases of postpartum depression based on paediatric clinical care screenings. | White LK, Perlstein S, Gorgone A, Himes MM, Kornfield SL, Shanmugan S, Weitz E, Njoroge WFM, Duncan AF, Burris HH, Laney N, Gur RE, Waller RE, Chaiyachati BH | The British journal of psychiatry : the journal of mental science | 40545256 | Br J Psychiatry | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40545256 |
| Reciprocal projections between the globus pallidus externa and cortex span motor and nonmotor regions. | Ferenczi EA, Wang W, Biswas A, Pottala T, Dong Y, Chan AK, Albanese MA, Sohur RS, Jia T, Mastro KJ, Sabatini BL | Proceedings of the National Academy of Sciences of the United States of America | 40460125 | Proc Natl Acad Sci U S A | 2025 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/40460125 |
| Projections between the globus pallidus externa and cortex span motor and non-motor regions. | Ferenczi EA, Wang W, Biswas A, Pottala T, Dong Y, Chan AK, Albanese MA, Sohur RS, Jia T, Mastro KJ, Sabatini BL | bioRxiv : the preprint server for biology | 39574769 | bioRxiv | 2024 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/39574769 |
| A spatiotemporal map of co-receptor signaling networks underlying B cell activation. | Susa KJ, Bradshaw GA, Eisert RJ, Schilling CM, Kalocsay M, Blacklow SC, Kruse AC | Cell reports | 38850533 | Cell Rep | 2024 Jun 25 | https://www.ncbi.nlm.nih.gov/pubmed/38850533 |
| In silico discovery of nanobody binders to a G-protein coupled receptor using AlphaFold-Multimer. | Harvey EP, Smith JS, Hurley JD, Granados AJ, Schmid EW, Liang-Lin JG, Zhang H, Meara EM, Wren EK, Paul S, Ferguson MP, Calvillo-Miranda VG, Alcantar MA, Marks DS, Walter JC, Kruse AC, Susa KJ | Nature communications | 42026072 | Nat Commun | 2026 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/42026072 |
| Tetraspanins: structure, dynamics, and principles of partner-protein recognition. | Susa KJ, Kruse AC, Blacklow SC | Trends in cell biology | 37783654 | Trends Cell Biol | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37783654 |
| Structural basis for regulation of Frizzled-4 signaling by the co-receptor Tetraspanin-12. | Granados AJ, Pratap PP, Alamo KAE, Susa KJ | bioRxiv : the preprint server for biology | 41040411 | bioRxiv | 2025 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/41040411 |
| Temporal photoproximity labeling of ligand-activated EGFR neighborhoods using MultiMap. | Lin Z, Ngo W, Chou YT, Wu H, Susa KJ, Jun YW, Bivona TG, Doudna JA, Wells JA | Nature chemical biology | 41254216 | Nat Chem Biol | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41254216 |
| Chemoimmunomodulation in triple negative breast cancer: a key to maximizing anti-PD-1 chemoimmunotherapeutic efficacy. | Gbadamosi MO, Molchan E, Makarem MS, Coleman KL, Ohaegbulam AC, Streeks KH | Oncoimmunology | 40631451 | Oncoimmunology | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/40631451 |
| A genome-wide association study using HapMap cell lines reveals modulators of cellular response to cyclophosphamide. | Gbadamosi MO, Bhise N, Ghosh TM, Molchan EK, Streeks K, Puglise J, Ohaegbulam A, Makarem M, Olabige O, Yang C, Ricks-Santi L, Mitchell DA, Fridley BL, Lamba JK | Future oncology (London, England) | 40356407 | Future Oncol | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40356407 |
| UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability. | Tsai JM, Aguirre JD, Li YD, Brown J, Focht V, Kater L, Kempf G, Sandoval B, Schmitt S, Rutter JC, Galli P, Sandate CR, Cutler JA, Zou C, Donovan KA, Lumpkin RJ, Cavadini S, Park PMC, Sievers Q, Hatton C, Ener E, Regalado BD, Sperling MT, Słabicki M, Kim J, Zon R, Zhang Z, Miller PG, Belizaire R, Sperling AS, Fischer ES, Irizarry R, Armstrong SA, Thomä NH, Ebert BL | Molecular cell | 37478846 | Mol Cell | 2023 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/37478846 |
| A single-cell transcriptomic map of the developing Atoh1 lineage identifies neural fate decisions and neuronal diversity in the hindbrain. | Butts JC, Wu SR, Durham MA, Dhindsa RS, Revelli JP, Ljungberg MC, Saulnier O, McLaren ME, Taylor MD, Zoghbi HY | Developmental cell | 39106860 | Dev Cell | 2024 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/39106860 |
| Population-scale sequencing resolves determinants of persistent EBV DNA. | Nyeo SS, Cumming EM, Burren OS, Pagadala MS, Gutierrez JC, Ali TA, Kida LC, Chen Y, Chu H, Hu F, Zou XZ, Hollis B, Fabre MA, MacArthur S, Wang Q, Ludwig LS, Dey KK, Petrovski S, Dhindsa RS, Lareau CA | Nature | 41606327 | Nature | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41606327 |
| Rare heterozygous missense variants in VSX2 are associated with retinal detachment. | Brock DC, Dhindsa JS, Chen Y, Ravanmehr V, Mitchell J, Hu F, Li X, Nandigam L, Wang Q, Wu K, Butts JC, Dhindsa HS, Frankfort BJ, Tran NM, Petrovski S, Dhindsa RS | PLoS genetics | 41632798 | PLoS Genet | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41632798 |
| Phenome-wide analysis of copy number variants in 470,727 UK Biobank genomes. | Zou XZ, Hu F, Lou H, Burren OS, Li X, Megy K, Wheeler E, Wu Q, Atanur SS, Karpinski M, Loesch D, Fairhurst-Hunter Z, Deevi SVV, Oerton E, Wen S, Jiang X, Salvoro C, Mitchell J, Nag A, Hollis B, O'Neill A, AstraZeneca Genomics Initiative, Harrow J, MacArthur S, Wasilewski S, O'Dell S, Tian L, Smith KR, Del Angel G, Fabre M, Dhindsa RS, Wang Q, Petrovski S, Carss K | Nature | 41639462 | Nature | 2026 Apr | https://www.ncbi.nlm.nih.gov/pubmed/41639462 |
| Genome-wide prediction of dominant and recessive neurodevelopmental disorder-associated genes. | Dhindsa RS, Weido BA, Dhindsa JS, Shetty AJ, Sands CF, Petrovski S, Vitsios D, Zoghbi AW | American journal of human genetics | 40015282 | Am J Hum Genet | 2025 Mar 6 | https://www.ncbi.nlm.nih.gov/pubmed/40015282 |
| Haploinsufficiency of ITSN1 is associated with a substantial increased risk of Parkinson's disease. | Spargo TP, Sands CF, Juan IR, Mitchell J, Ravanmehr V, Butts JC, De-Paula RB, Kim Y, Hu F, Wang Q, Vitsios D, Garg M, Middleton L, Tyrlik M, Messa M, Del Angel G, Calame DG, Saade H, Robak L, Hollis B, Cuddapah VA, Zoghbi HY, Shulman JM, Petrovski S, Al-Ramahi I, Tachmazidou I, Dhindsa RS | Cell reports | 40056900 | Cell Rep | 2025 Mar 25 | https://www.ncbi.nlm.nih.gov/pubmed/40056900 |
| DNA damage response profile distinguishes poor-acting gliomas with shared methylome signatures. | Leelatian N, Singh C, Bouffard R, Sundaram RK, Diggins KE, Sullivan W, Paradkar S, Omay ZE, Mobley BC, Gueble SE, Vasquez JC, Bindra RS | Neuro-oncology | 40887772 | Neuro Oncol | 2026 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/40887772 |
| Targeted CRISPR knockout screening identifies known and novel chemogenomic interactions between DNA damaging agents and DNA repair genes. | Heer CD, Elia JL, Menon V, Johnson SS, Arbelaez SR, Friedman S, Lopez-Giraldez F, Sundaram RK, Herzon SB, Bindra RS, Gueble SE | NAR cancer | 41522810 | NAR Cancer | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41522810 |
| DNA repair helicases: from mechanistic understanding to therapeutic implications. | Menon V, Gueble SE | NAR cancer | 41064806 | NAR Cancer | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41064806 |
| Novel Strategies for Improved Treatment of O6-Methylguanine-DNA Methyltransferase Promoter-Methylated Glioma. | Vasquez JC, Bindra RS, Gueble SE | Medical research archives | 41169667 | Med Res Arch | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/41169667 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley KB, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | GeroScience | 37393197 | Geroscience | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37393197 |
| Role of Estrogen Receptor α in Aging and Chronic Disease. | Isola JVV, Ko S, Ocañas SR, Stout MB | Advances in geriatric medicine and research | 37425648 | Adv Geriatr Med Res | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37425648 |
| Chromosomal and gonadal factors regulate microglial sex effects in the aging brain. | Ocañas SR, Ansere VA, Kellogg CM, Isola JVV, Chucair-Elliott AJ, Freeman WM | Brain research bulletin | 36804773 | Brain Res Bull | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36804773 |
| Specificity and efficiency of tamoxifen-mediated Cre induction is equivalent regardless of age. | Kellogg CM, Pham K, Ko S, Cox JEJ, Machalinski AH, Stout MB, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | iScience | 38058312 | iScience | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/38058312 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Hoolehan W, Kulpa AM, Stanford DR, Freeman WM | Epigenetics & chromatin | 37953264 | Epigenetics Chromatin | 2023 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/37953264 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley K, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | bioRxiv : the preprint server for biology | 36945372 | bioRxiv | 2023 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/36945372 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Stanford DR, Freeman WM | bioRxiv : the preprint server for biology | 37333391 | bioRxiv | 2023 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/37333391 |
| Flow Cytometry Analysis of Microglial Phenotypes in the Murine Brain During Aging and Disease. | Cox JEJ, Pham KD, Keck AW, Wright Z, Thomas MA, Freeman WM, Ocañas SR | Bio-protocol | 38948260 | Bio Protoc | 2024 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/38948260 |
| Protocol to isolate oligodendrocytes, microglia, endothelial cells, astrocytes, and neurons from a single mouse brain using magnetic-activated cell sorting. | Houmam S, Siodlak D, Pham KD, Salinas-Salinas C, Ocañas SR, Freeman WM, Rice HC | bioRxiv : the preprint server for biology | 40832248 | bioRxiv | 2025 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/40832248 |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Thomas MA, Wright Z, Chucair-Elliott AJ, Freeman WM | Journal of neuroinflammation | 37587511 | J Neuroinflammation | 2023 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/37587511 |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Chucair-Elliott AJ, Freeman WM | bioRxiv : the preprint server for biology | 36945656 | bioRxiv | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36945656 |
| Behavioral sex differences in the developmental emergence and selectivity of partner preferences in prairie voles. | Schaepe CA, Hiura LC | Hormones and behavior | 40532532 | Horm Behav | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40532532 |
| Prairie vole pair bonding and plasticity of the social brain. | Hiura LC, Donaldson ZR | Trends in neurosciences | 36369029 | Trends Neurosci | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36369029 |
| Leveraging individual power to improve racial equity in academia. | Monari PK, Hammond ER, Malone CL, Cuarenta A, Hiura LC, Wallace KJ, Taylor L, Pradhan DS | Hormones and behavior | 37030195 | Horm Behav | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37030195 |
| A universal method for the purification of C2H2 zinc finger arrays. | Liang J, Azubel M, Wang G, Nie Y, Kornberg RD, Beel AJ, Mattei PJ | PloS one | 39903729 | PLoS One | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/39903729 |
| High-throughput in silico screen uncovers key regulators of 3D genome architecture. | Bai J, Lyu Q, Tan J, Issner R, Tischer B, Liu H, Goel V, Ling X, Bernstein BE, Tsirigos A, Hansen AS, Xia B | bioRxiv : the preprint server for biology | 41415375 | bioRxiv | 2025 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/41415375 |
| Multimodal learning decodes the global binding landscape of chromatin-associated proteins. | Tan J, Fu X, Ling X, Mo S, Bai J, Rabadán R, Fenyö D, Boeke JD, Tsirigos A, Xia B | bioRxiv : the preprint server for biology | 40832322 | bioRxiv | 2025 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/40832322 |
| Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening. | Tan J, Shenker-Tauris N, Rodriguez-Hernaez J, Wang E, Sakellaropoulos T, Boccalatte F, Thandapani P, Skok J, Aifantis I, Fenyö D, Xia B, Tsirigos A | Nature biotechnology | 36624151 | Nat Biotechnol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36624151 |
| On the genetic basis of tail-loss evolution in humans and apes. | Xia B, Zhang W, Zhao G, Zhang X, Bai J, Brosh R, Wudzinska A, Huang E, Ashe H, Ellis G, Pour M, Zhao Y, Coelho C, Zhu Y, Miller A, Dasen JS, Maurano MT, Kim SY, Boeke JD, Yanai I | Nature | 38418917 | Nature | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38418917 |
| Cellular dynamics in pig-to-human kidney xenotransplantation. | Pan W, Zhang W, Zheng B, Camellato BR, Stern J, Lin Z, Khodadadi-Jamayran A, Kim J, Sommer P, Khalil K, Weldon E, Bai J, Zhu Y, Meyn P, Heguy A, Mangiola M, Griesemer A, Keating BJ, Montgomery RA, Xia B, Boeke JD | Med (New York, N.Y.) | 38776915 | Med | 2024 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/38776915 |
| Intermittent fasting interventions to leverage metabolic and circadian mechanisms for cancer treatment and supportive care outcomes. | Kalam F, James DL, Li YR, Coleman MF, Kiesel VA, Cespedes Feliciano EM, Hursting SD, Sears DD, Kleckner AS | Journal of the National Cancer Institute. Monographs | 37139971 | J Natl Cancer Inst Monogr | 2023 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/37139971 |
| Key takeaways for knowledge expansion of early-career scientists conducting Transdisciplinary Research in Energetics and Cancer (TREC): a report from the TREC Training Workshop 2022. | Kung CP, Skiba MB, Crosby EJ, Gorzelitz J, Kennedy MA, Kerr BA, Li YR, Nash S, Potiaumpai M, Kleckner AS, James DL, Coleman MF, Fairman CM, Galván GC, Garcia DO, Gordon MJ, His M, Hornbuckle LM, Kim SY, Kim TH, Kumar A, Mahé M, McDonnell KK, Moore J, Oh S, Sun X, Irwin ML | Journal of the National Cancer Institute. Monographs | 37139978 | J Natl Cancer Inst Monogr | 2023 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/37139978 |
| Moving the Needle Forward in Genomically-Guided Precision Radiation Treatment. | Tam A, Mercier BD, Thomas RM, Tizpa E, Wong IG, Shi J, Garg R, Hampel H, Gray SW, Williams T, Bazan JG, Li YR | Cancers | 38001574 | Cancers (Basel) | 2023 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/38001574 |
| Long-Term Latency of Highly Mutated Cells in Normal Mouse Skin Is Reversed by Exposure to Tumor Promoters and Chronic Tissue Damage. | Li YR, Kandyba E, Halliwill K, Delrosario R, Tran Q, Bayani N, Wu D, Mirzoeva OK, Reeves MQ, Islam SMA, Riva L, Bergstrom EN, Achanta K, DiGiovanni J, Alexandrov LB, Balmain A | Cancer discovery | 40073432 | Cancer Discov | 2025 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/40073432 |
| Grade 5 Radiation Necrosis After Whole-Brain Radiation Therapy. | Tam A, Li YR, Williams T, Yoon S | Practical radiation oncology | 38431371 | Pract Radiat Oncol | 2024 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/38431371 |
| Dietary Interventions in Cancer Treatment and Response: A Comprehensive Review. | Mercier BD, Tizpa E, Philip EJ, Feng Q, Huang Z, Thomas RM, Pal SK, Dorff TB, Li YR | Cancers | 36291933 | Cancers (Basel) | 2022 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/36291933 |
| Experience From an Early Exposure Education Program in Radiation Oncology for High School and Undergraduate Students. | Tam A, Ladbury C, Glaser S, Amini A, Chen YJ, Li YR | Practical radiation oncology | 38810923 | Pract Radiat Oncol | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/38810923 |
| Ignorance is Bliss? A Case of Incidental Discovery of ATM Mutation in Prostate Cancer. | Tam A, Li YR | International journal of radiation oncology, biology, physics | 38049230 | Int J Radiat Oncol Biol Phys | 2024 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/38049230 |
| Impact of oil and gas boom and busts on working-age mortality in the U.S. | Thombs RP, Willis MD | Environmental epidemiology (Philadelphia, Pa.) | 41282511 | Environ Epidemiol | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41282511 |
| Racialized economic segregation in relation to fecundability in a preconception cohort study. | Lovett SM, Campbell EJ, Richardson AS, Wesselink AK, Ncube CN, Cozier YC, Wise LA, Willis MD | Journal of urban health : bulletin of the New York Academy of Medicine | 41422358 | J Urban Health | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41422358 |
| A preconception cohort study of historical mortgage lending discrimination and present-day fecundability. | Lovett SM, Wise LA, Richardson AS, Campbell EJ, Vrkljan KA, Kirwa K, Wesselink AK, Rothman KJ, Willis MD | American journal of epidemiology | 41342351 | Am J Epidemiol | 2026 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/41342351 |
| Oil and Gas Development and Adverse Birth Outcomes: A Qualitative and Quantitative Bias Analysis of the Epidemiologic Literature. | J Clark C, C Bond J, A Vrkljan K, Rowse M, Polka E, J Campbell E, K Wesselink A, Aker A, D Willis M | Current environmental health reports | 41806058 | Curr Environ Health Rep | 2026 Mar 10 | https://www.ncbi.nlm.nih.gov/pubmed/41806058 |
| A Narrative Review of Spatial-Temporal Data Sources for Estimating Population-Level Exposures to Oil and Gas Development in the United States. | Campbell EJ, Koenig MR, Mooney FA, Clark CJ, González DJX, Deziel NC, Casey JA, Buonocore JJ, Willis MD | Current environmental health reports | 40263220 | Curr Environ Health Rep | 2025 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/40263220 |
| Wildfires increasingly threaten oil and gas wells in the western United States with disproportionate impacts on marginalized populations. | González DJX, Morello-Frosch R, Liu Z, Willis MD, Feng Y, McKenzie LM, Steiger BB, Wang J, Deziel NC, Casey JA | One earth (Cambridge, Mass.) | 39036466 | One Earth | 2024 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/39036466 |
| Evaluating participant engagement in a preconception cohort study in relation to the Dobbs decision. | Willis MD, Hoffman MN, Wang TR, Sabbath EL, Kuriyama AS, Wesselink AK, Wise LA | Paediatric and perinatal epidemiology | 38666636 | Paediatr Perinat Epidemiol | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38666636 |
| Residential Proximity to Oil and Gas Development and Mental Health in a North American Preconception Cohort Study: 2013-2023. | Willis MD, Campbell EJ, Selbe S, Koenig MR, Gradus JL, Nillni YI, Casey JA, Deziel NC, Hatch EE, Wesselink AK, Wise LA | American journal of public health | 38991173 | Am J Public Health | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38991173 |
| It's electric! An environmental equity perspective on the lifecycle of our energy sources. | Willis MD, Cushing LJ, Buonocore JJ, Deziel NC, Casey JA | Environmental epidemiology (Philadelphia, Pa.) | 37064423 | Environ Epidemiol | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37064423 |
| IMPACT OF BOOM-AND-BUST ECONOMIES FROM OIL AND GAS DEVELOPMENT ON PSYCHIATRIC HOSPITALIZATIONS AMONG MEDICAID BENEFICIARIES. | Willis MD, Cesare N, Harleman M, Black-Ingersoll F, Gradus JL, Thombs R, Oblath R, Buonocore JJ, Welch BM, Casey JA, Braun D, Dominici F, Nori-Sarma A | Environmental research, health : ERH | 41099011 | Environ Res Health | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/41099011 |
| Residential proximity to oil and gas development and risk of gestational diabetes mellitus. | Koenig MR, Vrkljan KA, Mooney FA, Campbell EJ, Deziel NC, Hatch EE, Wesselink AK, Wise LA, Willis MD | International journal of epidemiology | 42275297 | Int J Epidemiol | 2026 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/42275297 |
| High populations near fossil fuel energy infrastructure across the supply chain and implications for an equitable energy transition. | Buonocore JJ, Mooney FA, Campbell EJ, Sousa B, van Loenen B, Fabian MP, Nori-Sarma A, Willis MD | Environmental research letters : ERL [Web site] | 41255873 | Environ Res Lett | 2025 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/41255873 |
| Invited commentary: improving spatial exposure data for everyone-life-course social context and ascertaining residential history. | Sims KD, Glymour MM, Ncube CN, Willis MD | American journal of epidemiology | 39098825 | Am J Epidemiol | 2025 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/39098825 |
| Invited Perspective: Drilling Down into the Mechanisms Linking Oil and Gas Development to Adverse Perinatal Health Outcomes. | Casey JA, Willis MD | Environmental health perspectives | 39412280 | Environ Health Perspect | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39412280 |
| School-based exposures to oil and gas development for public school children in the United States. | Clark CJ, Campbell E, Grady ST, Buonocore J, Aker A, Deziel NC, Casey JA, Willis M | Journal of exposure science & environmental epidemiology | 41904266 | J Expo Sci Environ Epidemiol | 2026 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41904266 |
| Evolutionary-scale enzymology enables exploration of a rugged catalytic landscape. | Muir DF, Asper GPR, Notin P, Posner JA, Marks DS, Keiser MJ, Pinney MM | Science (New York, N.Y.) | 40504906 | Science | 2025 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/40504906 |
| Evolutionary-Scale Enzymology Enables Biochemical Constant Prediction Across a Multi-Peaked Catalytic Landscape. | Muir DF, Asper GPR, Notin P, Posner JA, Marks DS, Keiser MJ, Pinney MM | bioRxiv : the preprint server for biology | 39484523 | bioRxiv | 2024 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/39484523 |
| Coupling high-throughput protease enzymology with viral replication reveals biochemical constraints of viral fitness. | Aidlen D, Vo WVT, Young NJ, Rosecrans J, Kurianowicz A, Chuo SW, Asper GPR, Anderson D, Posner JA, Muir DF, Freitas N, Ott M, Craik CS, Taha TY, Pinney MM | bioRxiv : the preprint server for biology | 41659632 | bioRxiv | 2026 Jan 28 | https://www.ncbi.nlm.nih.gov/pubmed/41659632 |
| Macrophage SPAK deletion limits a low potassium-induced kidney inflammatory program. | Wu A, Zhang Y, Bock F, Arroyo JP, Delpire E, Zhang MZ, Harris RC, Terker AS | American journal of physiology. Renal physiology | 39298551 | Am J Physiol Renal Physiol | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39298551 |
| Bicarbonate is the primary inducer of KCC3a expression in renal cortical B-type intercalated cells. | Ferdaus MZ, Terker AS, Koumangoye R, Wall SM, Delpire E | American journal of physiology. Cell physiology | 37036298 | Am J Physiol Cell Physiol | 2023 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/37036298 |
| Insulin-regulated aminopeptidase is required for water excretion in response to acute hypotonic stress. | Zuchowski Y, Carty J, Terker AS, Bock F, Trapani JB, Bhave G, Watts JA, Keller S, Zhang M, Zent R, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 36995926 | Am J Physiol Renal Physiol | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36995926 |
| Pharmacology of Compounds Targeting Cation-Chloride Cotransporter Physiology. | Delpire E, Terker AS, Gagnon KB | Handbook of experimental pharmacology | 37563251 | Handb Exp Pharmacol | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/37563251 |
| Deletion of Cab39 adaptors results in KS-WNK1 independent accumulation of SPAK in biomolecular condensates. | Ferdaus MZ, Inoue MK, Terker AS, Welling PA, Delpire E | American journal of physiology. Renal physiology | 41903110 | Am J Physiol Renal Physiol | 2026 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/41903110 |
| Deletion of KS-WNK1 promotes NCC activation by increasing WNK1/4 abundance. | Ferdaus MZ, Terker AS, Koumangoye RB, Al-Qusairi L, Welling PA, Delpire E | American journal of physiology. Renal physiology | 38961847 | Am J Physiol Renal Physiol | 2024 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/38961847 |
| Disruption of mitochondrial electron transport impairs urinary concentration via AMPK-dependent suppression of aquaporin 2. | Carty JS, Bessho R, Zuchowski Y, Trapani JB, Davidoff O, Kobayashi H, Roland JT, Watts JA, Terker AS, Bock F, Arroyo JP, Haase VH | JCI insight | 39361429 | JCI Insight | 2024 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/39361429 |
| Rac1 promotes kidney collecting duct repair by mechanically coupling cell morphology to mitotic entry. | Bock F, Dong X, Li S, Viquez OM, Sha E, Tantengco M, Hennen EM, Plosa E, Ramezani A, Brown KL, Whang YM, Terker AS, Arroyo JP, Harrison DG, Fogo A, Brakebusch CH, Pozzi A, Zent R | Science advances | 38324689 | Sci Adv | 2024 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/38324689 |
| Rac1 promotes proximal tubule kidney repair by coupling the actin cytoskeleton to mitochondrial function. | M Viquez O, Melzer M, Li S, Tantengco M, Dong X, Sha E, Huang J, Krystofiak ES, Hart RC, Luo W, Warren C, Bayazid AB, Zhang R, Bessho R, Haase VH, Brakebusch C, Inoue T, Brooks C, Wilson MH, Terker AS, Arroyo JP, Pozzi A, Zent R, Bock F | Proceedings of the National Academy of Sciences of the United States of America | 41248288 | Proc Natl Acad Sci U S A | 2025 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/41248288 |
| K(ir)5.1-modulated potassium flux stimulates an anabolic kidney phenotype. | Wu A, Inoue MK, Zhang Y, Hasenour CM, Arroyo JP, Bock F, Yu A, Ferdaus MZ, Blackwell Y, Lazarenko RM, Young JD, Denton JS, Delpire E, Zhang MZ, Harris RC, Terker AS | iScience | 41111916 | iScience | 2025 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/41111916 |
| Epidermal growth factor receptor activation is essential for kidney fibrosis development. | Cao S, Pan Y, Terker AS, Arroyo Ornelas JP, Wang Y, Tang J, Niu A, Kar SA, Jiang M, Luo W, Dong X, Fan X, Wang S, Wilson MH, Fogo A, Zhang MZ, Harris RC | Nature communications | 37963889 | Nat Commun | 2023 Nov 14 | https://www.ncbi.nlm.nih.gov/pubmed/37963889 |
| Plasma Potassium Negatively Correlates With Sodium Chloride Cotransporter Abundance and Phosphorylation in Urinary Extracellular Vesicles From Patients With Chronic Kidney Disease. | Wu A, Wolley MJ, Vesey D, Terker AS, Welling PA, Fenton RA, Stowasser M | Nephrology (Carlton, Vic.) | 40084744 | Nephrology (Carlton) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40084744 |
| Kir4.2 mediates proximal potassium effects on glutaminase activity and kidney injury. | Terker AS, Zhang Y, Arroyo JP, Cao S, Wang S, Fan X, Denton JS, Zhang MZ, Harris RC | Cell reports | 36543132 | Cell Rep | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36543132 |
| Myeloid EGFR deficiency accelerates recovery from AKI via macrophage efferocytosis and neutrophil apoptosis. | Pan Y, Cao S, Wang Y, Tang J, Niu A, Kar SA, Jiang M, Peng F, Siew GM, Lu W, Wang S, Wilson M, Brooks C, Fogo AB, Terker AS, Ornelas JPA, Chen J, Zhang MZ, Harris RC | Nature communications | 40379634 | Nat Commun | 2025 May 16 | https://www.ncbi.nlm.nih.gov/pubmed/40379634 |
| ASN Kidney Health Guidance on Potassium and Phosphorus Food Additives. | Biruete A, Anderson C, Bernier-Jean A, Clase CM, Clegg D, Crews DC, Denburg M, Hill Gallant KM, Gutierrez OM, Ix JH, Kienholz M, Lambert K, Lee SY, Liebman SE, Nelms CL, Palmer BF, Perwad F, Picard K, St-Jules DE, Terker AS, Uribarri J, Kovesdy CP, ASN Kidney Health Guidance Workgroup on Food Additives | Journal of the American Society of Nephrology : JASN | 40965988 | J Am Soc Nephrol | 2025 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/40965988 |
| VU6036720: The First Potent and Selective In Vitro Inhibitor of Heteromeric Kir4.1/5.1 Inward Rectifier Potassium Channels. | McClenahan SJ, Kent CN, Kharade SV, Isaeva E, Williams JC, Han C, Terker A, Gresham R 3rd, Lazarenko RM, Days EL, Romaine IM, Bauer JA, Boutaud O, Sulikowski GA, Harris R, Weaver CD, Staruschenko A, Lindsley CW, Denton JS | Molecular pharmacology | 35246480 | Mol Pharmacol | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35246480 |
| Low potassium activation of proximal mTOR/AKT signaling is mediated by Kir4.2. | Zhang Y, Bock F, Ferdaus M, Arroyo JP, L Rose K, Patel P, Denton JS, Delpire E, Weinstein AM, Zhang MZ, Harris RC, Terker AS | Nature communications | 38886379 | Nat Commun | 2024 Jun 17 | https://www.ncbi.nlm.nih.gov/pubmed/38886379 |
| Kidney collecting duct-derived vasopressin is not essential for appropriate concentration or dilution of urine. | Zuchowski Y, Carty JS, Trapani JB, Watts JA, Bock F, Zhang M, Terker AS, Zent R, Delpire E, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 38695074 | Am J Physiol Renal Physiol | 2024 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/38695074 |
| Corrigendum to "Myeloid cyclooxygenase-2/prostaglandin E2/E-type prostanoid receptor 4 promotes transcription factor MafB-dependent inflammatory resolution in acute kidney injury." Kidney Int. 2022;101:79-91. | Pan Y, Cao S, Terker AS, Tang J, Sasaki K, Wang Y, Niu A, Luo W, Daassi D, Fan X, Wang S, Wilson MH, Zhang MZ, Harris RC | Kidney international | 36948771 | Kidney Int | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36948771 |
| Kindlins regulate integrin- and growth factor-dependent ureteric bud formation. | Li S, Bock F, Viquez O, Hassan A, Mathew S, Palamuttam R, Mernaugh G, Dong X, Melzer M, Tantengco M, Carroll T, Terker A, Arroyo JP, Pozzi A, Zent R | Development (Cambridge, England) | 41582640 | Development | 2026 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/41582640 |
| KCC3 is not required for the distal convoluted tubule response to reduced dietary potassium intake. | Inoue MK, Yu A, Ferdaus MZ, Zhang Y, Su XT, Bock F, Arroyo JP, Cho KY, Ellison DH, Zhang MZ, Harris RC, Delpire E, Terker AS | American journal of physiology. Renal physiology | 40875335 | Am J Physiol Renal Physiol | 2025 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/40875335 |
| Synaptic proteins that aggregate and degrade slower with aging accumulate in microglia. | Guldner IH, Wagner VP, Moran-Losada P, Shi SM, Chen K, Meese BT, Oh H, Le Guen Y, Lu N, Wong PS, To NS, Garceau D, Guo Z, Luo J, Sasner M, Keller A, Yang AC, Cheung T, Wyss-Coray T | bioRxiv : the preprint server for biology | 40475609 | bioRxiv | 2025 May 21 | https://www.ncbi.nlm.nih.gov/pubmed/40475609 |
| Physiological brain clearance architecture revealed by neuronal protein tracing. | Chayama Y, Rao NR, Perla D, Zhang Z, Reid M, Nelson S, Wen X, Ding B, Blumenfeld J, Apolonio A, Doddipalli S, Zhou H, Turhan SG, Shih PY, Brendel M, Fu YH, Ertürk A, Kolabas ZI, Huang Y, Yang AC | Cell | 42214342 | Cell | 2026 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/42214342 |
| mRNA delivery of genetically encoded mosaic-8 pan-sarbecovirus RBD vaccines. | Cohen AA, Keeffe JR, Manasyan L, Madireddy I, Fils AIP, Dam KA, Stober HE, Hills RA, Moon WJ, Lin PJC, Howarth MR, Hoffmann MAG, Bjorkman PJ | bioRxiv : the preprint server for biology | 41280075 | bioRxiv | 2025 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/41280075 |
| ESCRT recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like particles and enhanced antibody responses. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, Bjorkman PJ | bioRxiv : the preprint server for biology | 36597535 | bioRxiv | 2022 Dec 27 | https://www.ncbi.nlm.nih.gov/pubmed/36597535 |
| Bivalent mRNA booster encoding virus-like particles elicits potent polyclass receptor-binding domain antibodies in pre-vaccinated mice. | Fan C, Cohen AA, Dam KA, Rorick AV, Priso Fils AI, Yang Z, Gnanapragasam PNP, Segovia LN, Huey-Tubman KE, Moon WJ, Lin PJC, Bjorkman PJ, Hoffmann MAG | eLife | 42059889 | Elife | 2026 Apr 30 | https://www.ncbi.nlm.nih.gov/pubmed/42059889 |
| ESCRT recruitment to SARS-CoV-2 spike induces virus-like particles that improve mRNA vaccines. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, West AP Jr, Bjorkman PJ | Cell | 37146611 | Cell | 2023 May 25 | https://www.ncbi.nlm.nih.gov/pubmed/37146611 |
| Bivalent mRNA booster encoding virus-like particles elicits potent polyclass RBD antibodies in pre-vaccinated mice. | Fan C, Cohen AA, Dam KA, Rorick AV, Priso Fils AI, Yang Z, Gnanapragasam PNP, Segovia LN, Huey-Tubman KE, Moon WJ, Lin PJC, Bjorkman PJ, Hoffmann MAG | bioRxiv : the preprint server for biology | 40894670 | bioRxiv | 2025 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/40894670 |
| N4BP1 coordinates ubiquitin-dependent crosstalk within the IκB kinase family to limit Toll-like receptor signaling and inflammation. | Gitlin AD, Maltzman A, Kanno Y, Heger K, Reja R, Schubert AF, Wierciszewski LJ, Pantua H, Kapadia SB, Harris SF, Webster JD, Newton K, Dixit VM | Immunity | 38697117 | Immunity | 2024 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/38697117 |
| CFAP47 is Implicated in X-Linked Polycystic Kidney Disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MPG, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | Kidney international reports | 39698362 | Kidney Int Rep | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39698362 |
| Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson Z, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | medRxiv : the preprint server for health sciences | 38496498 | medRxiv | 2024 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/38496498 |
| Bidirectional disruption of GNAS transcripts causes broad methylation defects in pseudohypoparathyroidism type 1B. | Iwasaki Y, Reyes M, Ryabets-Lienhard A, Gales B, Linglart A, Miller DE, Salusky IB, Bastepe M, Jüppner H | Proceedings of the National Academy of Sciences of the United States of America | 40249781 | Proc Natl Acad Sci U S A | 2025 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/40249781 |
| Deep Intronic SVA_E Insertion Identified as the Most Common Pathogenic Variant Associated With Canavan Disease: A Diagnostic Blind Spot. | Dominguez Gonzalez CA, Bell KM, Rajagopalan R, de Silva MG, Lemes A, Zabala C, Pérez-Vidarte F, Cerisola A, Vossough A, Whitehead MT, Cunningham C, Brown NJ, Quin R, Simons C, Conway T, Uebergang E, Rius R, Kumaheri MA, Kotes ER, Vohra A, Zalusky MPG, Anderson ZB, Storz SHR, Ward SA, Goffena J, Gustafson JA, White SM, Vanderver A, Miller DE | Neurology. Genetics | 40995055 | Neurol Genet | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40995055 |
| Long-Read Sequencing is Required for Precision Diagnosis of Incontinentia Pigmenti. | Wojcik MH, Clark RD, Elias AF, Genetti CA, Madden JA, Simpson D, Golkar L, Zalusky MP, Miller AL, Rodriguez A, Goffena J, Dash CA, Damaraju N, Gibson SB, Storz SH, Anderson Z, Gustafson JA, Thiffault I, Farrow EG, Pastinen T, Lin J, Huang J, Beggs AH, Agrawal PB, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Miller DT, Miller DE | Research square | 39975911 | Res Sq | 2025 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/39975911 |
| Patterns of crossover distribution in Drosophila mauritiana necessitate a re-thinking of the centromere effect on crossing over. | Hawley RS, Price A, Li H, Jagannathan M, Staber C, Hughes SE, Williams S, Perera A, Egidy RR, Lawlor A, Miller DE, Blumenstiel JP | Genetics | 40052765 | Genetics | 2025 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/40052765 |
| Applications of long-read sequencing to Mendelian genetics. | Mastrorosa FK, Miller DE, Eichler EE | Genome medicine | 37316925 | Genome Med | 2023 Jun 14 | https://www.ncbi.nlm.nih.gov/pubmed/37316925 |
| Long-Read DNA and RNA Sequencing to Streamline Clinical Genetic Testing and Reduce Barriers to Comprehensive Genetic Testing. | Damaraju N, Miller AL, Miller DE | The journal of applied laboratory medicine | 38167773 | J Appl Lab Med | 2024 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/38167773 |
| Identification of GGC Repeat Expansions in ZFHX3 among Chilean Movement Disorder Patients. | Saffie-Awad P, Moller A, Daida K, Alvarez Jerez P, Chen Z, Anderson ZB, Isayan M, Paquette K, Gibson SB, Fulcher M, Miano-Burkhardt A, Malik L, Baker B, Jarreau P, Houlden H, Ryten M, Gu B, Chaisson MJP, Miller DE, Chaná-Cuevas P, Blauwendraat C, Singleton AB, Billingsley KJ | Movement disorders : official journal of the Movement Disorder Society | 40459184 | Mov Disord | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40459184 |
| Clinical RNA sequencing clarifies variants of uncertain significance identified by prior testing. | Marquez J, Cech JN, Paschal CR, Dingmann B, Scott AI, Thies JM, Mills MR, Albert CM, Beck AE, Beckman E, Bonkowski ES, Earl DL, Lam CT, Mefford HC, Merritt JL 2nd, Nelson Z, Ohlsen TJ, Taylor MR, Perlman SJ, Rudzinski ER, Sikes MC, Waligorski N, Wenger TL, Adam MP, Mirzaa GM, Bennett JT, Glass IA, Sternen DL, Miller DE | Genetics in medicine open | 39484203 | Genet Med Open | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39484203 |
| Diagnostic utility of DNA methylation analysis in genetically unsolved pediatric epilepsies and CHD2 episignature refinement. | LaFlamme CW, Rastin C, Sengupta S, Pennington HE, Russ-Hall SJ, Schneider AL, Bonkowski ES, Almanza Fuerte EP, Allan TJ, Zalusky MP, Goffena J, Gibson SB, Nyaga DM, Lieffering N, Hebbar M, Walker EV, Darnell D, Olsen SR, Kolekar P, Djekidel MN, Rosikiewicz W, McConkey H, Kerkhof J, Levy MA, Relator R, Lev D, Lerman-Sagie T, Park KL, Alders M, Cappuccio G, Chatron N, Demain L, Genevieve D, Lesca G, Roscioli T, Sanlaville D, Tedder ML, Gupta S, Jones EA, Weisz-Hubshman M, Ketkar S, Dai H, Worley KC, Rosenfeld JA, Chao HT, Undiagnosed Diseases Network, Neale G, Carvill GL, University of Washington Center for Rare Disease Research, Wang Z, Berkovic SF, Sadleir LG, Miller DE, Scheffer IE, Sadikovic B, Mefford HC | Nature communications | 39107278 | Nat Commun | 2024 Aug 6 | https://www.ncbi.nlm.nih.gov/pubmed/39107278 |
| Subdural hemorrhage, macrocephaly, rash, and developmental delay in an infant: A pathogenic variant in NLRP3 causes CINCA/NOMID. | Koti AS, Lanis A, Finlayson S, Canny S, Feldman EA, Miller DE, Rosenwasser N, Scott AA, Wong SC, Feldman KW | American journal of medical genetics. Part A | 37548074 | Am J Med Genet A | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37548074 |
| needLR: long-read structural variant annotation with population-scale frequency estimation. | Gustafson JA, Lin J, Zalusky MPG, Eichler EE, Miller DE | Bioinformatics (Oxford, England) | 42308524 | Bioinformatics | 2026 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/42308524 |
| needLR: Long-read structural variant annotation with population-scale frequency estimation. | Gustafson JA, Lin J, Eichler EE, Miller DE | ArXiv | 41415608 | ArXiv | 2025 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/41415608 |
| Characteristics, Genetic Testing, and Diagnoses of Infants with Neonatal Encephalopathy Not Due to Hypoxic Ischemic Encephalopathy: A Cohort Study. | Lenahan A, Mietzsch U, Wood TR, Callahan KP, Weiss EM, Miller DE, German K, Natarajan N, Puia-Dumitrescu M, Esposito V, Kolnik S, Law JB | The Journal of pediatrics | 37269901 | J Pediatr | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37269901 |
| A distant global control region is essential for normal expression of anterior HOXA genes during mouse and human craniofacial development. | Wilderman A, D'haene E, Baetens M, Yankee TN, Winchester EW, Glidden N, Roets E, Van Dorpe J, Janssens S, Miller DE, Galey M, Brown KM, Stottmann RW, Vergult S, Weaver KN, Brugmann SA, Cox TC, Cotney J | Nature communications | 38167838 | Nat Commun | 2024 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/38167838 |
| Advances in the discovery and analyses of human tandem repeats. | Chaisson MJP, Sulovari A, Valdmanis PN, Miller DE, Eichler EE | Emerging topics in life sciences | 37905568 | Emerg Top Life Sci | 2023 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/37905568 |
| Splice-modulating antisense oligonucleotides targeting a pathogenic intronic variant in adult polyglucosan body disease correct mis-splicing and restore enzyme activity in patient cells. | Thomas R, Miyoshi E, Akman HO, Storz SHR, Goffena J, Pytte J, Miller DE, Skourti-Stathaki K, Crooke ST | Nucleic acids research | 40671519 | Nucleic Acids Res | 2025 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/40671519 |
| Pangenome discovery of missing autism variants. | Sui Y, Lin J, Noyes MD, Kwon Y, Wong I, Koundinya N, Harvey WT, Wu M, Hoekzema K, Munson KM, Garcia GH, Knuth J, Wertz J, Wang T, Hennick K, Karunakaran D, Polo Prieto RA, Meyer-Schuman R, Cherry F, Pehlivan D, Suter B, Gustafson JA, Miller DE, Human Pangenome Reference Consortium (HPRC), Berk-Rauch H, Nowakowski TJ, Chakravarti A, Zoghbi HY, Eichler EE | medRxiv : the preprint server for health sciences | 40778144 | medRxiv | 2025 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/40778144 |
| GENOME REPORT: Chromosome-scale genome assembly of the African spiny mouse ( Acomys cahirinus ). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | bioRxiv : the preprint server for biology | 37066261 | bioRxiv | 2023 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/37066261 |
| CLN2 disease resulting from a novel homozygous deep intronic splice variant in TPP1 discovered using long-read sequencing. | Steigerwald C, Borsuk J, Pappas J, Galey M, Scott A, Devaney JM, Miller DE, Abreu NJ | Molecular genetics and metabolism | 37922835 | Mol Genet Metab | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37922835 |
| Concordance of Whole-Genome Long-Read Sequencing with Standard Clinical Testing for Prader-Willi and Angelman Syndromes. | Paschal CR, Zalusky MPG, Beck AE, Gillentine MA, Narayanan J, Damaraju N, Goffena J, Storz SHR, Miller DE | The Journal of molecular diagnostics : JMD | 39756651 | J Mol Diagn | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39756651 |
| Long-read sequencing of hundreds of diverse brains provides insight into the impact of structural variation on gene expression and DNA methylation. | Billingsley KJ, Meredith M, Daida K, Jerez PA, Negi S, Malik L, Genner RM, Moller A, Zheng X, Gibson SB, Mastoras M, Baker B, Kouam C, Paquette K, Jarreau P, Makarious MB, Moore A, Hong S, Vitale D, Shah S, Monlong J, Pantazis CB, Asri M, Shafin K, Carnevali P, Marenco S, Auluck P, Mandal A, Miga KH, Rhie A, Reed X, Ding J, Cookson MR, Nalls M, Singleton A, Miller DE, Chaisson M, Timp W, Gibbs JR, Phillippy AM, Kolmogorov M, Jain M, Sedlazeck FJ, Paten B, Blauwendraat C | bioRxiv : the preprint server for biology | 39764002 | bioRxiv | 2024 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/39764002 |
| Identification of GGC Repeat Expansions in ZFHX3 Among Chilean Movement Disorder Patients. | Saffie-Awad P, Moller A, Daida K, Jerez PA, Chen Z, Anderson ZB, Isayan M, Paquette K, Gibson SB, Fulcher M, Miano-Burkhardt A, Malik L, Baker B, Jarreau P, Houlden H, Ryten M, Gu B, Chaisson MJ, Miller DE, Chaná-Cuevas P, Blauwendraat C, Singleton AB, Billingsley KJ | medRxiv : the preprint server for health sciences | 40166539 | medRxiv | 2025 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/40166539 |
| Congenital pleuropulmonary blastoma in a newborn with a variant of uncertain significance in DICER1 evaluated by RNA-sequencing. | Lyle ANJ, Ohlsen TJD, Miller DE, Brown G, Waligorski N, Stark R, Taylor MR, Puia-Dumitrescu M | Maternal health, neonatology and perinatology | 36922881 | Matern Health Neonatol Perinatol | 2023 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/36922881 |
| Panels, Exomes, Genomes, and More-Finding the Best Path Through the Diagnostic Odyssey. | Lenahan AL, Squire AE, Miller DE | Pediatric clinics of North America | 37704349 | Pediatr Clin North Am | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37704349 |
| CFAP47 is a novel causative gene implicated in X-linked polycystic kidney disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MP, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | medRxiv : the preprint server for health sciences | 38633811 | medRxiv | 2024 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/38633811 |
| Combined approaches, including long-read sequencing, address the diagnostic challenge of HYDIN in primary ciliary dyskinesia. | Fleming A, Galey M, Briggs L, Edwards M, Hogg C, John S, Wilkinson S, Quinn E, Rai R, Burgoyne T, Rogers A, Patel MP, Griffin P, Muller S, Carr SB, Loebinger MR, Lucas JS, Shah A, Jose R, Mitchison HM, Shoemark A, Miller DE, Morris-Rosendahl DJ | European journal of human genetics : EJHG | 38605126 | Eur J Hum Genet | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38605126 |
| High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SHR, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | Genome research | 39358015 | Genome Res | 2024 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/39358015 |
| Heterozygous inversion breakpoints suppress meiotic crossovers by altering recombination repair outcomes. | Li H, Berent E, Hadjipanteli S, Galey M, Muhammad-Lahbabi N, Miller DE, Crown KN | PLoS genetics | 37053290 | PLoS Genet | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37053290 |
| Beyond the exome: what's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | ArXiv | 36713248 | ArXiv | 2023 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/36713248 |
| 3-hour genome sequencing and targeted analysis to rapidly assess genetic risk. | Zalusky MP, Gustafson JA, Bohaczuk SC, Mallory B, Reed P, Wenger T, Beckman E, Chang IJ, Paschal CR, Buchan JG, Lockwood CM, Puia-Dumitrescu M, Garalde DR, Guillory J, Markham AJ, Bamshad MJ, Eichler EE, Stergachis AB, Miller DE | Genetics in medicine open | 39421454 | Genet Med Open | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39421454 |
| Beyond the exome: What's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | American journal of human genetics | 37541186 | Am J Hum Genet | 2023 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/37541186 |
| Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | G3 (Bethesda, Md.) | 37552705 | G3 (Bethesda) | 2023 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/37552705 |
| Long-read DNA sequencing resolves a rare case of alloimmune hemolysis mimicking autoimmune hemolysis. | Chao HX, Ma T, Hegerova L, Nester T, Sen N, Er L, Harris S, Lockwood T, Buchan JG, Lannert KW, Gasper J, Goffena J, Zalusky MPG, Storz SHR, Montemayor-Garcia C, Pagano MB, Johnsen JM, Panch SR, Miller DE | Transfusion | 40959943 | Transfusion | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40959943 |
| Antisense oligonucleotides to KIF1A polymorphisms expand targets and rescue patient-derived neurons in vitro. | Zuccaro MV, Young RE, Hu J, Lanzano P, Semenova E, Lin X, Skowronski A, Shen Y, Kim TH, Miller DE, Germain N, Sarmiere P, LeDuc CA, Chung WK | Nature communications | 41513671 | Nat Commun | 2026 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/41513671 |
| Genetic and epigenetic contributors and mimickers of phenotypic hypoxic-ischemic encephalopathy (HIE). | Mietzsch U, Law JB, Thayyil B, Miller DE, Wood TR, Natarajan N, Mohammad K | Seminars in perinatology | 40603154 | Semin Perinatol | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/40603154 |
| Using the linear references from the pangenome to discover missing autism variants. | Sui Y, Lin J, Noyes MD, Kwon Y, Wong I, Koundinya N, Harvey WT, Wu M, Hoekzema K, Munson KM, Garcia GH, Knuth J, Wertz J, Wang T, Hennick K, Karunakaran D, Polo Prieto RA, Meyer-Schuman R, Cherry F, Pehlivan D, Suter B, Gustafson JA, Miller DE, Human Pangenome Reference Consortium (HPRC), Berk-Rauch H, Nowakowski TJ, Chakravarti A, Zoghbi HY, Eichler EE | Nature communications | 41577710 | Nat Commun | 2026 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/41577710 |
| Phenotypes and ontogeny of senescent hepatic stellate cells in metabolic dysfunction-associated steatohepatitis. | Yashaswini CN, Qin T, Bhattacharya D, Amor C, Lowe S, Lujambio A, Wang S, Friedman SL | Journal of hepatology | 38508241 | J Hepatol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38508241 |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Nature aging | 38267706 | Nat Aging | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38267706 |
| Aging and immunity: the age-old tango. | Fernández Maestre I, Harris AS, Amor C | Genes & development | 40436627 | Genes Dev | 2025 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/40436627 |
| Anti-uPAR CAR T cells reverse and prevent aging-associated defects in intestinal regeneration and fitness. | Eskiocak O, Gewolb J, Shah V, Rouse JA, Chowdhury S, Akyildiz EO, Fernández-Maestre I, Boyer JA, Filliol A, Harris AS, Utama R, Guo G, Castro-Hernández C, Nnuji-John E, Chung C, Anderson A, Flowers S, Habel J, Romesser PB, Levine RL, Lowe SW, Sadelain M, Beyaz S, Amor C | Nature aging | 41291258 | Nat Aging | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41291258 |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Research square | 37841853 | Res Sq | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37841853 |
| Senolytic CAR T cells reverse aging-associated defects in intestinal regeneration and fitness. | Eskiocak O, Chowdhury S, Shah V, Nnuji-John E, Chung C, Boyer JA, Harris AS, Habel J, Sadelain M, Beyaz S, Amor C | bioRxiv : the preprint server for biology | 38529506 | bioRxiv | 2024 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/38529506 |
| Spatially clustered type I interferon responses at injury borderzones. | Ninh VK, Calcagno DM, Yu JD, Zhang B, Taghdiri N, Sehgal R, Mesfin JM, Chen CJ, Kalhor K, Toomu A, Duran JM, Adler E, Hu J, Zhang K, Christman KL, Fu Z, Bintu B, King KR | Nature | 39198639 | Nature | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39198639 |
| MERFISH+, a large-scale, multi-omics spatial technology resolves the molecular holograms of the 3D human developing heart. | Kern C, Zhang Q, Lu Y, Eschbach J, Zeng Z, Farah EN, Tai CY, Yang K, Jenie I, Yao F, Zhao Z, Ma Q, Padilla CG, Monell A, Moghadami S, Zhu F, Li B, Hou A, Tucker G, Ellison D, Chi NC, Qiu X, Zhu Q, Bintu B | bioRxiv : the preprint server for biology | 41279640 | bioRxiv | 2025 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/41279640 |
| Spatial organization and detection of social odors in mouse primary olfactory system. | Bintu B, Isogai Y, Jenie I, Zhuang X, Dulac C | Cell | 42054995 | Cell | 2026 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/42054995 |
| A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons. | Heffel MG, Xu H, Pastor-Alonso O, Li X, Baig MS, Irfan Ghoor R, Li R, Kern C, Kum J, Zhang Y, Paino J, Tsai MJ, Tai CY, Tucker G, Zhao Z, Hou A, von Behren Z, Bhade M, Li S, Sandoval K, Scholes J, Codrea F, Calimlim J, Liao EK, Leung G, Kim J, Eskin E, Flint J, Cotter JA, Pasaniuc B, Bintu B, Zhu Q, Mukamel EA, Ernst J, Paredes MF, Luo C | bioRxiv : the preprint server for biology | 41659519 | bioRxiv | 2026 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/41659519 |
| Temporally distinct 3D multi-omic dynamics in the developing human brain. | Heffel MG, Zhou J, Zhang Y, Lee DS, Hou K, Pastor-Alonso O, Abuhanna KD, Galasso J, Kern C, Tai CY, Garcia-Padilla C, Nafisi M, Zhou Y, Schmitt AD, Li T, Haeussler M, Wick B, Zhang MJ, Xie F, Ziffra RS, Mukamel EA, Eskin E, Nowakowski TJ, Dixon JR, Pasaniuc B, Ecker JR, Zhu Q, Bintu B, Paredes MF, Luo C | Nature | 39385032 | Nature | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39385032 |
| Association between rheumatoid arthritis and risk of radiotherapy toxicity: a systematic review. | Liebenberg N, McWilliam A, Kerns SL, Marshall DC, West CM | BMJ oncology | 39524982 | BMJ Oncol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39524982 |
| Systematic Review of Comparisons Between Plastic and Silicone Dilators: Revealing a Knowledge Gap. | Morgan O, Lopez MD, Caban Martinez AJ, Marshall DC, Schnur JB | Sexual medicine reviews | 36030181 | Sex Med Rev | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36030181 |
| Advancing the evaluation of radiation-induced vaginal toxicity using ultrasound radiomics: Phantom validation and pilot clinical study. | Wang J, Shelton J, Zhou B, Marshall DC, Joshi H, Yoshida EJ, Yang X, Liu T | Medical physics | 40344179 | Med Phys | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40344179 |
| Effect of treatment interruptions on overall survival in patients with triple-negative breast cancer. | Chow R, Hasan S, Choi JI, Fox J, Chhabra AM, Marshall DC, Bakst RL, Simone CB 2nd | Journal of the National Cancer Institute | 37399094 | J Natl Cancer Inst | 2023 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/37399094 |
| Sexual health and treatment-related sexual dysfunction in sexual and gender minorities with prostate cancer. | Dickstein DR, Edwards CR, Lehrer EJ, Tarras ES, Gallitto M, Sfakianos J, Galsky MD, Stock R, Safer JD, Rosser BRS, Marshall DC | Nature reviews. Urology | 37217695 | Nat Rev Urol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37217695 |
| Evaluation of AI-based auto-contouring tools in radiotherapy: A single-institution study. | Wang T, Tam J, Chum T, Tai C, Marshall DC, Buckstein M, Liu J, Green S, Stewart RD, Liu T, Chao M | Journal of applied clinical medical physics | 39837647 | J Appl Clin Med Phys | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39837647 |
| Sexual activity and functioning after breast cancer treatment: perspectives on the importance of pleasure from a radiotherapy cohort. | Besculides M, Carney L, Gorbenko K, Green S, Brito M, Lynch J, Feldman C, Munoz C, Mazumdar M, Marshall DC | BMC women's health | 41162938 | BMC Womens Health | 2025 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/41162938 |
| Motivators for sexual activity among women who are cancer survivors: a cross-sectional study. | Besculides M, Brody-Barre J, Carney LM, Waeldner K, Kapouranis T, Downes M, Greenwald L, Gupta V, Buckstein M, Green S, Goodman K, Dutta P, Saitta A, Marshall DC | The journal of sexual medicine | 41168467 | J Sex Med | 2026 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/41168467 |
| A qualitative analysis of female patient perspectives on physician communication regarding sexual dysfunction associated with pelvic radiotherapy. | Morgan O, Schnur J, Caban-Martinez AJ, Duenas-Lopez M, Huang M, Portelance L, Elkhadem A, Marshall DC | The journal of sexual medicine | 37037772 | J Sex Med | 2023 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/37037772 |
| Pharmaceutical industry payments and prescriptions of direct acting antiviral drugs for hepatitis C virus infection. | Murayama A, Sigel KM, Tarras ES, Marshall DC | Liver international : official journal of the International Association for the Study of the Liver | 39310996 | Liver Int | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39310996 |
| Effects of trauma history on cancer-related screening, diagnosis, and treatment. | Marshall DC, Carney LM, Hsieh K, Dickstein DR, Downes M, Chaudhari A, McVorran S, Montgomery GH, Schnur JB | The Lancet. Oncology | 37922933 | Lancet Oncol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37922933 |
| Gender-Affirming Surgery and Cancer: Considerations for Radiation Oncologists for Pelvic Radiation in Transfeminine Patients. | Smart AC, Liu KX, Domogauer JD, Rodriguez-Russo C, Jones B, Dickstein DR, Mancias JD, Shiloh RY, Wintner A, Zietman AL, Marshall DC, Dyer MA, Russo AL | International journal of radiation oncology, biology, physics | 37230432 | Int J Radiat Oncol Biol Phys | 2023 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/37230432 |
| Female erectile tissues and sexual dysfunction after pelvic radiotherapy: A scoping review. | Marshall DC, Tarras ES, Ali A, Bloom J, Torres MA, Kahn JM | CA: a cancer journal for clinicians | 35298025 | CA Cancer J Clin | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35298025 |
| Industry-Sponsored Research Funding to Urologists in the United States Between 2014 and 2022. | Murayama A, Nguyen DD, Nguyen AV, Murad L, Cheng A, Elterman DS, Kulkarni GS, Bhojani N, Satkunasivam R, Trinh QD, Marshall DC, Wallis CJD | Urology practice | 39454021 | Urol Pract | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39454021 |
| Breast and Pelvic Cancer Survivors' Preferences for Psychosexual Interventions to Address Sexual Health Concerns: A Qualitative Study. | Carney LM, Besculides M, Gorbenko K, Schnur JB, Munoz C, Lynch J, Feldman C, Montgomery GH, Gupta V, Green S, Ghiassi-Nejad Z, Goodman KA, Marshall DC | Psycho-oncology | 40500244 | Psychooncology | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40500244 |
| Getting c-Literate: Bulboclitoris Functional Anatomy and Its Implications for Radiation Therapy. | Greenwald LM, Williams A, Downes MH, Reidenberg JS, Collins V, Bane O, Bowen S, Okorom A, Dickstein DR, Garcia-Barros M, Brody R, Hannan JL, Thor M, Lymberis S, Hindman N, Chubak B, Marshall DC | Practical radiation oncology | 41569221 | Pract Radiat Oncol | 2026 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/41569221 |
| Sexual function in chronic illness and cancer perspectives of the patient, partner, and healthcare provider; innovations; and updates: recommendations from the Fifth International Consultation on Sexual Medicine (ICSM 2024). | Wylie KR, Kirby MG, Nimbi FM, Krychman M, Reese JB, Marshall DC | Sexual medicine reviews | 41729785 | Sex Med Rev | 2026 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/41729785 |
| Cuban American Perspectives on Sexual Dysfunction Following Pelvic Radiotherapy: A Qualitative Study. | Duenas-Lopez M, Morgan O, Marshall DC, Carney L, Caban-Martinez A, Huang M, Portelance L, Schnur J | Sexuality and disability | 38948491 | Sex Disabil | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38948491 |
| Neutrophil-to-lymphocyte ratio as a predictor of surgical outcomes in head and neck cancer. | Kao DD, Ferrandino RM, Roof SA, Marshall DC, Khan MN, Chai RL, Park YA, Sigel KM | Head & neck | 37204760 | Head Neck | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37204760 |
| Sex-Based Bias in Artificial Intelligence-Based Segmentation Models in Clinical Oncology. | Doo FX, Naranjo WG, Kapouranis T, Thor M, Chao M, Yang X, Marshall DC | Clinical oncology (Royal College of Radiologists (Great Britain)) | 39874747 | Clin Oncol (R Coll Radiol) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39874747 |
| Association of radiation-induced normal tissue toxicity with a high genetic risk for rheumatoid arthritis. | McWilliam A, Marshall D, Kerns SL, Barnett GC, Vega A, Kapouranis T, Aguado Barrera ME, Avuzzi B, Azria D, Chang-Claude J, Choudhury A, Coedo Costa C, Dunning A, Farcy-Jacquet MP, Faivre-Finn C, Gutiérrez-Enríquez S, Fuentes-Ríos O, Gómez Caamaño A, Lambrecht M, López Pleguezuelos C, Rancati T, Rattay T, de Ruysscher D, Seibold P, Sperk E, Talbot C, Webb A, Veldeman L, Rosenstein BS, West CML, REQUITE Consortium | Journal of the National Cancer Institute | 39761002 | J Natl Cancer Inst | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/39761002 |
| Dose and fractionation regimen for brachytherapy boost in cervical cancer in the US. | Hsieh K, Bloom JR, Dickstein DR, Hsieh C, Marshall D, Ghiassi-Nejad Z, Raince J, Lymberis S, Chadha M, Gupta V | Gynecologic oncology | 38052109 | Gynecol Oncol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38052109 |
| Associations between pharmaceutical industry payments to physicians and prescription of PARP inhibitors in the United States. | Murayama A, Marshall DC | Gynecologic oncology | 38147713 | Gynecol Oncol | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38147713 |
| Prophylactic feeding tube placement for squamous cell carcinoma of the head and neck. | Kao DD, Ferrandino RM, Bauml JM, Marshall DC, Bakst R, Roof S, Park YA, Sigel KM | Oral oncology | 36326521 | Oral Oncol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36326521 |
| Trauma-Informed Radiation Therapy: Implementation and Evaluation of a Sensitive Practice Tool for Female Patients Undergoing Radiotherapy for Breast Cancer. | Marshall D, Green S, Jones BM, Starrs C, Montgomery GH, Minassian K, Wunder B, Force J, Schnur JB | Journal of the American College of Radiology : JACR | 36126825 | J Am Coll Radiol | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36126825 |
| Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State. | Pitter KL, Grbovic-Huezo O, Joost S, Singhal A, Blum M, Wu K, Holm M, Ferrena A, Bhutkar A, Hudson A, Lecomte N, de Stanchina E, Chaligne R, Iacobuzio-Donahue CA, Pe'er D, Tammela T | Cancer research | 35952360 | Cancer Res | 2022 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/35952360 |
| Evolved histone tail regulates 53BP1 recruitment at damaged chromatin. | Kelliher JL, Folkerts ML, Shen KV, Song W, Tengler K, Stiefel CM, Lee SO, Dray E, Zhao W, Koss B, Pannunzio NR, Leung JW | Nature communications | 38821984 | Nat Commun | 2024 May 31 | https://www.ncbi.nlm.nih.gov/pubmed/38821984 |
| Resveratrol induces major histocompatibility complex class I antigen presentation in a STING-dependent and independent manner in melanoma. | Morehead LC, Koss B, Fil D, Heflin B, Garg S, Wallis KF, Tackett AJ, Miousse IR | Molecular immunology | 37837954 | Mol Immunol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37837954 |
| Enhancer-activated RET confers protection against oxidative stress to KMT2A-rearranged acute myeloid leukemia. | Frett B, Stephens KE, Koss B, Melnyk S, Farrar J, Saha D, Roy Choudhury S | Cancer science | 38226414 | Cancer Sci | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38226414 |
| EZH2 loss during metabolic stress drives restoration of MHC class I machinery in melanoma. | Edmondson JL, Reed MR, Fil D, Heflin B, McKinnon A, Bauer MA, Morehead LC, Avaritt NL, Phillips M, Taverna SD, Tackett AJ, Koss B | iScience | 40546964 | iScience | 2025 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/40546964 |
| CAR-T Therapies in Solid Tumors: Opportunities and Challenges. | Guzman G, Reed MR, Bielamowicz K, Koss B, Rodriguez A | Current oncology reports | 36853475 | Curr Oncol Rep | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36853475 |
| Chemical inhibition of DNA-PKcs impairs the activation and cytotoxicity of CD4(+) helper and CD8(+) effector T cells. | Azevedo-Pouly AC, Appell LE, Burdine L, Rogers LJ, Morehead LC, Fil D, Barker M, Rainwater RR, Waldrip ZJ, Koss B, Burdine MS | Immunology and cell biology | 37149747 | Immunol Cell Biol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37149747 |
| CRISPR/dCas9-KRAB-Mediated Suppression of S100b Restores p53-Mediated Apoptosis in Melanoma Cells. | Roy Choudhury S, Heflin B, Taylor E, Koss B, Avaritt NL, Tackett AJ | Cells | 36899866 | Cells | 2023 Feb 24 | https://www.ncbi.nlm.nih.gov/pubmed/36899866 |
| Real-Time Detection of Circulating Tumor Cells in Living Animals Using Functionalized Large Gold Nanorods. | Dutta R, Liba O, SoRelle ED, Winetraub Y, Ramani VC, Jeffrey SS, Sledge GW, de la Zerda A | Nano letters | 30895796 | Nano Lett | 2019 Apr 10 | https://www.ncbi.nlm.nih.gov/pubmed/30895796 |
| Noninvasive virtual biopsy using micro-registered optical coherence tomography (OCT) in human subjects. | Winetraub Y, Van Vleck A, Yuan E, Terem I, Zhao J, Yu C, Chan W, Do H, Shevidi S, Mao M, Yu J, Hong M, Blankenberg E, Rieger KE, Chu S, Aasi S, Sarin KY, de la Zerda A | Science advances | 38598626 | Sci Adv | 2024 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/38598626 |
| Portraying emotions at their unfolding: a multilayered approach for probing dynamics of neural networks. | Raz G, Winetraub Y, Jacob Y, Kinreich S, Maron-Katz A, Shaham G, Podlipsky I, Gilam G, Soreq E, Hendler T | NeuroImage | 22285693 | Neuroimage | 2012 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/22285693 |
| Synchrony and specificity in the maternal and the paternal brain: relations to oxytocin and vasopressin. | Atzil S, Hendler T, Zagoory-Sharon O, Winetraub Y, Feldman R | Journal of the American Academy of Child and Adolescent Psychiatry | 22840551 | J Am Acad Child Adolesc Psychiatry | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22840551 |
| In Vivo Molecular Optical Coherence Tomography of Lymphatic Vessel Endothelial Hyaluronan Receptors. | Si P, Sen D, Dutta R, Yousefi S, Dalal R, Winetraub Y, Liba O, de la Zerda A | Scientific reports | 28439123 | Sci Rep | 2017 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/28439123 |
| Gold Nanoprisms as Optical Coherence Tomography Contrast Agents in the Second Near-Infrared Window for Enhanced Angiography in Live Animals. | Si P, Yuan E, Liba O, Winetraub Y, Yousefi S, SoRelle ED, Yecies DW, Dutta R, de la Zerda A | ACS nano | 30422624 | ACS Nano | 2018 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/30422624 |
| Intravital 3D visualization and segmentation of murine neural networks at micron resolution. | Lautman Z, Winetraub Y, Blacher E, Yu C, Terem I, Chibukhchyan A, Marshel JH, de la Zerda A | Scientific reports | 35907928 | Sci Rep | 2022 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/35907928 |
| Revealing membrane integrity and cell size from diffusion kurtosis time dependence. | Lee HH, Novikov DS, Fieremans E, Huang SY | Magnetic resonance in medicine | 39473219 | Magn Reson Med | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39473219 |
| High-fidelity, high-spatial-resolution diffusion magnetic resonance imaging of ex vivo whole human brain at ultra-high gradient strength with structured low-rank echo-planar imaging ghost correction. | Ramos-Llordén G, Lobos RA, Kim TH, Tian Q, Witzel T, Lee HH, Scholz A, Keil B, Yendiki A, Bilgiç B, Haldar JP, Huang SY | NMR in biomedicine | 36106429 | NMR Biomed | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36106429 |
| Distinct cellular processes drive motor skill learning in the human brain. | Griffa G, Palombo M, Yeffal A, Lee HH, Huang SY, Della-Maggiore V | bioRxiv : the preprint server for biology | 41040166 | bioRxiv | 2025 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/41040166 |
| Longitudinal changes in cortical cell body and neurite density in people with multiple sclerosis. | Krijnen EA, Lee H, Ma Y, Lee HH, Schoonheim MM, Klawiter EC, Huang SY | Neuroscience | 40691883 | Neuroscience | 2025 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/40691883 |
| Scattering approach to diffusion quantifies axonal damage in brain injury. | Abdollahzadeh A, Coronado-Leija R, Lee HH, Sierra A, Fieremans E, Novikov DS | ArXiv | 39975429 | ArXiv | 2025 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/39975429 |
| In vivo cortical microstructure mapping using high-gradient diffusion MRI accounting for intercompartmental water exchange effects. | Dong T, Lee HH, Zang H, Lee H, Tian Q, Wan L, Fan Q, Huang S | NeuroImage | 40349743 | Neuroimage | 2025 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/40349743 |
| Ultra-high gradient connectomics and microstructure MRI scanner for imaging of human brain circuits across scales. | Ramos-Llordén G, Lee HH, Davids M, Dietz P, Krug A, Kirsch JE, Mahmutovic M, Müller A, Ma Y, Lee H, Maffei C, Yendiki A, Bilgic B, Park DJ, Tian Q, Clifford B, Lo WC, Stocker S, Fischer J, Ruyters G, Roesler M, Potthast A, Benner T, Rummert E, Schuster R, Basser PJ, Witzel T, Wald LL, Rosen BR, Keil B, Huang SY | Nature biomedical engineering | 40670720 | Nat Biomed Eng | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40670720 |
| GACELLE: GPU-accelerated tools for model parameter estimation and image reconstruction. | Chan KS, Lee H, Ma Y, Bilgic B, Huang SY, Lee HH, Marques JP | ArXiv | 41356069 | ArXiv | 2025 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/41356069 |
| DIMOND: DIffusion Model OptimizatioN with Deep Learning. | Li Z, Li Z, Bilgic B, Lee HH, Ying K, Huang SY, Liao H, Tian Q | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 38634608 | Adv Sci (Weinh) | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38634608 |
| Detecting Collagen Fiber Architecture after Destabilization of the Medial Meniscus Surgery Using High-Resolution Diffusion Tensor Imaging. | Tod N, Chen J, Sylvanus B, Liu Z, Han X, Lin M, Liu F, Lee HH, Wang N | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 41475693 | J Orthop Res | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41475693 |
| What If Each Voxel Were Measured With a Different Diffusion Protocol? | Coelho S, Lemberskiy G, Zhu A, Lee HH, Abad N, Foo TKF, Fieremans E, Novikov DS | Magnetic resonance in medicine | 41387990 | Magn Reson Med | 2026 Apr | https://www.ncbi.nlm.nih.gov/pubmed/41387990 |
| Dependence of the Extra-Cellular Diffusion Coefficient on the Fractions of Neurites and Cell Bodies in Gray Matter. | Lee HH, Abdollahzadeh A, Lee H, Coronado-Leija R, Fieremans E, Huang SY, Novikov DS | Magnetic resonance in medicine | 42365425 | Magn Reson Med | 2026 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/42365425 |
| Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. | Fan Q, Eichner C, Afzali M, Mueller L, Tax CMW, Davids M, Mahmutovic M, Keil B, Bilgic B, Setsompop K, Lee HH, Tian Q, Maffei C, Ramos-Llordén G, Nummenmaa A, Witzel T, Yendiki A, Song YQ, Huang CC, Lin CP, Weiskopf N, Anwander A, Jones DK, Rosen BR, Wald LL, Huang SY | NeuroImage | 35217204 | Neuroimage | 2022 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/35217204 |
| In vivo human neurite exchange imaging (NEXI) at 500 mT/m diffusion gradients. | Chan KS, Ma Y, Lee H, Marques JP, Olesen J, Coelho S, Novikov DS, Jespersen S, Huang SY, Lee HH | bioRxiv : the preprint server for biology | 39763747 | bioRxiv | 2024 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/39763747 |
| In vivo mapping of cellular resolution neuropathology in brain ischemia with diffusion MRI. | Wu D, Lee HH, Ba R, Turnbill V, Wang X, Luo Y, Walczak P, Fieremans E, Novikov DS, Martin LJ, Northington FJ, Zhang J | Science advances | 39018390 | Sci Adv | 2024 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/39018390 |
| Age-related alterations in human cortical microstructure across the lifespan: Insights from high-gradient diffusion MRI. | Lee H, Lee HH, Ma Y, Eskandarian L, Gaudet K, Tian Q, Krijnen EA, Russo AW, Salat DH, Klawiter EC, Huang SY | Aging cell | 39118344 | Aging Cell | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39118344 |
| Perivascular space diffusivity and brain microstructural measures are associated with circadian time and sleep quality. | Brendstrup-Brix K, Ulv Larsen SM, Lee HH, Knudsen GM | Journal of sleep research | 38676409 | J Sleep Res | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38676409 |
| Complementary Sensitivity of Fixed-Time and Fixed-Oscillation Regimes to Exchange and Structural Disorder in the Human Brain Revealed Using Oscillating-Gradient Diffusion MRI With Ultra-Strong Gradients. | Sung D, Chan KS, Gerold J, Zhong W, Zheng J, Tian Q, Guo H, Huang SY, Lee HH | Magnetic resonance in medicine | 41692595 | Magn Reson Med | 2026 Jun | https://www.ncbi.nlm.nih.gov/pubmed/41692595 |
| Scattering approach to diffusion quantifies axonal damage in brain injury. | Abdollahzadeh A, Coronado-Leija R, Lee HH, Sierra A, Fieremans E, Novikov DS | Nature communications | 41198676 | Nat Commun | 2025 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/41198676 |
| Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. | Huang SY, Witzel T, Keil B, Scholz A, Davids M, Dietz P, Rummert E, Ramb R, Kirsch JE, Yendiki A, Fan Q, Tian Q, Ramos-Llordén G, Lee HH, Nummenmaa A, Bilgic B, Setsompop K, Wang F, Avram AV, Komlosh M, Benjamini D, Magdoom KN, Pathak S, Schneider W, Novikov DS, Fieremans E, Tounekti S, Mekkaoui C, Augustinack J, Berger D, Shapson-Coe A, Lichtman J, Basser PJ, Wald LL, Rosen BR | NeuroImage | 34464739 | Neuroimage | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34464739 |
| Romer-EPTI: rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale dMRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | bioRxiv : the preprint server for biology | 38352481 | bioRxiv | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38352481 |
| The influence of axonal beading and undulation on axonal diameter mapping. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | bioRxiv : the preprint server for biology | 37131702 | bioRxiv | 2023 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/37131702 |
| Quantifying axonal features of human superficial white matter from three-dimensional multibeam serial electron microscopy data assisted by deep learning. | Tian Q, Ngamsombat C, Lee HH, Berger DR, Wu Y, Fan Q, Bilgic B, Li Z, Novikov DS, Fieremans E, Rosen BR, Lichtman JW, Huang SY | NeuroImage | 40222502 | Neuroimage | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40222502 |
| Visualizing cortical laminar architecture in the living human brain using next-generation ultra-high-gradient diffusion MRI. | Huang S, Lee H, Ma Y, Chan KS, Krijnen E, Eskandarian L, Bhatt A, Gerold J, Mahmutovic M, Puonti O, Zeng X, Binder LJD, Fischl B, Keil B, Ramos-Llordén G, Klawiter E, Lee HH | Research square | 40585214 | Res Sq | 2025 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/40585214 |
| Romer-EPTI: Rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale diffusion MRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | Magnetic resonance in medicine | 39552568 | Magn Reson Med | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39552568 |
| Eddy current-induced artifact correction in high b-value ex vivo human brain diffusion MRI with dynamic field monitoring. | Ramos-Llordén G, Park DJ, Kirsch JE, Scholz A, Keil B, Maffei C, Lee HH, Bilgic B, Edlow BL, Mekkaoui C, Yendiki A, Witzel T, Huang SY | Magnetic resonance in medicine | 37753621 | Magn Reson Med | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37753621 |
| The effects of axonal beading and undulation on axonal diameter estimation from diffusion MRI: Insights from simulations in human axons segmented from three-dimensional electron microscopy. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | NMR in biomedicine | 38168082 | NMR Biomed | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38168082 |
| In vivo human neurite exchange time imaging at 500 mT/m diffusion gradients: Neurite exchange time imaging on Connectome 2.0. | Chan KS, Ma Y, Lee H, Marques JP, Olesen JL, Coelho S, Novikov DS, Jespersen SN, Huang SY, Lee HH | Imaging neuroscience (Cambridge, Mass.) | 40726825 | Imaging Neurosci (Camb) | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40726825 |
| Age-Related Alterations in Hippocampal Microstructure Quantified Using High-Gradient Diffusion MRI (dMRI) in an Unfolded Hippocampal Space. | Ma Y, Lee H, Chan KS, Eskandarian L, Gaudet K, Tian Q, Bhatt A, Gerold J, Russo AW, Salat DH, Klawiter EC, Huang SY, Lee HH | Aging cell | 41194528 | Aging Cell | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41194528 |
| Socioeconomic vulnerability and public water arsenic concentrations across the US. | Nigra AE, Cazacu-De Luca A, Navas-Acien A | Environmental pollution (Barking, Essex : 1987) | 36084737 | Environ Pollut | 2022 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/36084737 |
| Nationwide geospatial analysis of county racial and ethnic composition and public drinking water arsenic and uranium. | Martinez-Morata I, Bostick BC, Conroy-Ben O, Duncan DT, Jones MR, Spaur M, Patterson KP, Prins SJ, Navas-Acien A, Nigra AE | Nature communications | 36460659 | Nat Commun | 2022 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/36460659 |
| US drinking water quality: exposure risk profiles for seven legacy and emerging contaminants. | Levin R, Villanueva CM, Beene D, Cradock AL, Donat-Vargas C, Lewis J, Martinez-Morata I, Minovi D, Nigra AE, Olson ED, Schaider LA, Ward MH, Deziel NC | Journal of exposure science & environmental epidemiology | 37739995 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37739995 |
| Uranium exposure and kidney tubule biomarkers in the Multi-Ethnic Study of Atherosclerosis (MESA). | Anderson WA, Domingo-Relloso A, Galvez-Fernandez M, Schilling K, Glabonjat RA, Basu A, Nigra AE, Gutierrez OM, Scherzer R, Goldsmith J, Sarnak MJ, Bonventre JV, Kimmel PL, Vasan RS, Ix JH, Shlipak MG, Navas-Acien A | Environmental research | 39922262 | Environ Res | 2025 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/39922262 |
| Drinking water arsenic, urinary arsenic biomarkers, and cognitive impairment in the REGARDS study. | Angley M, Zhang Y, Nigra AE, Lombard MA, Gribble MO, Lu L, Unverzagt FW, McClure LA, Judd SE, Cushman M, Brockman J, Kahe K | Environmental research | 41534586 | Environ Res | 2026 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/41534586 |
| Geospatial Assessment of Racial/Ethnic Composition, Social Vulnerability, and Lead Water Service Lines in New York City. | Nigra AE, Lieberman-Cribbin W, Bostick BC, Chillrud SN, Carrión D | Environmental health perspectives | 37646509 | Environ Health Perspect | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37646509 |
| Impact of lowering the US maximum contaminant level on arsenic exposure: Differences by race, region, and water arsenic in NHANES 2003-2014. | Spaur M, Bostick BC, Chillrud SN, Factor-Litvak P, Navas-Acien A, Nigra AE | Environmental pollution (Barking, Essex : 1987) | 37331581 | Environ Pollut | 2023 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/37331581 |
| Cross-sectional associations between drinking water arsenic and urinary inorganic arsenic in the United States: NHANES 2003-2014. | Spaur M, Lombard MA, Ayotte JD, Bostick BC, Chillrud SN, Navas-Acien A, Nigra AE | Environmental research | 36963713 | Environ Res | 2023 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/36963713 |
| Sociodemographic inequalities in uranium and other metals in community water systems across the USA, 2006-11: a cross-sectional study. | Ravalli F, Yu Y, Bostick BC, Chillrud SN, Schilling K, Basu A, Navas-Acien A, Nigra AE | The Lancet. Planetary health | 35397220 | Lancet Planet Health | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35397220 |
| Contribution of arsenic and uranium in private wells and community water systems to urinary biomarkers in US adults: The Strong Heart Study and the Multi-Ethnic Study of Atherosclerosis. | Spaur M, Glabonjat RA, Schilling K, Lombard MA, Galvez-Fernandez M, Lieberman-Cribbin W, Hayek C, Ilievski V, Balac O, Izuchukwu C, Patterson K, Basu A, Bostick BC, Chen Q, Sanchez T, Navas-Acien A, Nigra AE | Journal of exposure science & environmental epidemiology | 37558699 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37558699 |
| Public Water Arsenic and Birth Outcomes in the Environmental Influences on Child Health Outcomes Cohort. | Nigra AE, Bloomquist TR, Rajeev T, Burjak M, Casey JA, Goin DE, Herbstman JB, Ornelas Van Horne Y, Wylie BJ, Cerna-Turoff I, Braun JM, McArthur KL, Karagas MR, Ames JL, Sherris AR, Bulka CM, Padula AM, Howe CG, Fry RC, Eaves LA, Breton CV, Cassidy-Bushrow AE, Lewis J, MacKenzie D, Beene D, Farzan SF, Sathyanarayana S, Hipwell AE, Morello-Frosch R, Snyder BM, Hartert TV, Elliott AJ, O'Connor TG, Kress AM, ECHO Cohort Consortium | JAMA network open | 40522663 | JAMA Netw Open | 2025 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/40522663 |
| Disinfection Byproducts and Inorganic Contaminants in the U.S. Correctional Facility Public Water Systems. | Bannon E, Lieberman-Cribbin W, Spriggs R, Adkins-Jackson PB, Van Horne YO, Parks RM, Prins SJ, Nigra AE | Environmental justice (Print) | 42077814 | Environ Justice | 2026 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/42077814 |
| Association of Water Arsenic With Incident Diabetes in U.S. Adults: The Multi-Ethnic Study of Atherosclerosis and the Strong Heart Study. | Spaur M, Galvez-Fernandez M, Chen Q, Lombard MA, Bostick BC, Factor-Litvak P, Fretts AM, Shea SJ, Navas-Acien A, Nigra AE | Diabetes care | 38656975 | Diabetes Care | 2024 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/38656975 |
| Public drinking water contaminant estimates for birth cohorts in the Environmental Influences on Child Health Outcomes (ECHO) Cohort. | Bloomquist TR, Spaur M, Cerna-Turoff I, Kress AM, Burjak M, Kupsco A, Casey JA, Herbstman JB, Nigra AE | Journal of exposure science & environmental epidemiology | 39098852 | J Expo Sci Environ Epidemiol | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39098852 |
| Regional and racial/ethnic inequalities in public drinking water fluoride concentrations across the US. | Hefferon R, Goin DE, Sarnat JA, Nigra AE | Journal of exposure science & environmental epidemiology | 37391608 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37391608 |
| CAR-T cell therapy in brain malignancies: obstacles in the face of cellular trafficking and persistence. | Yaacoub S, Vannoy E, Maslova S, Haffey A, Khorsandi K, Sheybani N, Haydar D | Frontiers in immunology | 40612954 | Front Immunol | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40612954 |
| Profiling of the immune landscape in murine glioblastoma following blood brain/tumor barrier disruption with MR image-guided focused ultrasound. | Sheybani ND, Witter AR, Garrison WJ, Miller GW, Price RJ, Bullock TNJ | Journal of neuro-oncology | 34734364 | J Neurooncol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34734364 |
| Barriers to immune cell infiltration in tumors. | Melssen MM, Sheybani ND, Leick KM, Slingluff CL Jr | Journal for immunotherapy of cancer | 37072352 | J Immunother Cancer | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37072352 |
| Applications of focused ultrasound-mediated blood-brain barrier opening. | Gorick CM, Breza VR, Nowak KM, Cheng VWT, Fisher DG, Debski AC, Hoch MR, Demir ZEF, Tran NM, Schwartz MR, Sheybani ND, Price RJ | Advanced drug delivery reviews | 36272635 | Adv Drug Deliv Rev | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36272635 |
| Therapeutic Ultrasound for Multimodal Cancer Treatment: A Spotlight on Breast Cancer. | Demir ZEF, Sheybani ND | Annual review of biomedical engineering | 39971377 | Annu Rev Biomed Eng | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/39971377 |
| Focused ultrasound for the treatment of glioblastoma. | Roberts JW, Powlovich L, Sheybani N, LeBlang S | Journal of neuro-oncology | 35267132 | J Neurooncol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35267132 |
| MR Imaging-Guided Focused Ultrasound for Breast Tumors. | DeWitt M, Demir ZEF, Sherlock T, Brenin DR, Sheybani ND | Magnetic resonance imaging clinics of North America | 39322350 | Magn Reson Imaging Clin N Am | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39322350 |
| Solid Tumor Treatment via Augmentation of Bioactive C6 Ceramide Levels with Thermally Ablative Focused Ultrasound. | Thim EA, Fox T, Deering T, Vass LR, Sheybani ND, Kester M, Price RJ | bioRxiv : the preprint server for biology | 36993445 | bioRxiv | 2023 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/36993445 |
| Letter to the editor regarding "Translation of focused ultrasound for blood-brain barrier opening in glioma". | Price RJ, Bullock TNJ, Sheybani ND | Journal of controlled release : official journal of the Controlled Release Society | 35780955 | J Control Release | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35780955 |
| Rapid Interactions of Widespread Brain Networks Characterize Semantic Cognition. | Aboud KS, Nguyen TQ, Del Tufo SN, Chang C, Zald DH, Key AP, Price GR, Landman BA, Cutting LE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 36384679 | J Neurosci | 2023 Jan 4 | https://www.ncbi.nlm.nih.gov/pubmed/36384679 |
| Regenerative Potential of Mandibular Condyle Cartilage and Bone Cells Compared to Costal Cartilage Cells When Seeded in Novel Gelatin Based Hydrogels. | Chin AR, Taboas JM, Almarza AJ | Annals of biomedical engineering | 33155145 | Ann Biomed Eng | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33155145 |
| Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants. | Fray EJ, Wu F, Simonetti FR, Zitzmann C, Sambaturu N, Molina-Paris C, Bender AM, Liu PT, Ventura JD, Wiseman RW, O'Connor DH, Geleziunas R, Leitner T, Ribeiro RM, Perelson AS, Barouch DH, Siliciano JD, Siliciano RF | Cell host & microbe | 36809762 | Cell Host Microbe | 2023 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/36809762 |
| Superinfection promotes replication and diversification of defective HIV-1 proviruses in people with non-suppressible viraemia. | Hariharan V, White JA, Dragoni F, Fray EJ, Pathoulas N, Moskovljevic M, Zhang H, Singhal A, Lai J, Beg SA, Scully EP, Gilliams EA, Block DS, Keruly J, Moore RD, Siliciano JD, Simonetti FR, Siliciano RF | Nature microbiology | 41044362 | Nat Microbiol | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/41044362 |
| Learning from Persistent Viremia: Mechanisms and Implications for Clinical Care and HIV-1 Cure. | Wu F, Simonetti FR | Current HIV/AIDS reports | 37955826 | Curr HIV/AIDS Rep | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37955826 |
| Last in first out: SIV proviruses seeded later in infection are harbored in short-lived CD4(+) T cells. | Sambaturu N, Fray EJ, Wu F, Zitzmann C, Simonetti FR, Barouch DH, Siliciano JD, Siliciano RF, Ribeiro RM, Perelson AS, Molina-París C, Leitner T | bioRxiv : the preprint server for biology | 37961482 | bioRxiv | 2023 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/37961482 |
| Cognate antigen engagement induces HIV-1 expression in latently infected CD4(+) T cells from people on long-term antiretroviral therapy. | Moskovljevic M, Dragoni F, Board NL, Wu F, Lai J, Zhang H, White JR, Hoh R, Lynn K, Tebas P, Mounzer K, Deeks SG, Montaner LJ, Siliciano JD, Siliciano RF, Simonetti FR | Immunity | 39612916 | Immunity | 2024 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/39612916 |
| Bispecific antibodies promote natural killer cell-mediated elimination of HIV-1 reservoir cells. | Board NL, Yuan Z, Wu F, Moskovljevic M, Ravi M, Sengupta S, Mun SS, Simonetti FR, Lai J, Tebas P, Lynn K, Hoh R, Deeks SG, Siliciano JD, Montaner LJ, Siliciano RF | Nature immunology | 38278966 | Nat Immunol | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38278966 |
| Proviral location affects cognate peptide-induced virus production and immune recognition of HIV-1-infected T cell clones. | Dragoni F, Kwaa AK, Traut CC, Veenhuis RT, Woldemeskel BA, Camilo-Contreras A, Raymond HE, Dykema AG, Scully EP, Rosecrans AM, Smith KN, Bushman FD, Simonetti FR, Blankson JN | The Journal of clinical investigation | 37698927 | J Clin Invest | 2023 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/37698927 |
| The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy. | McMyn NF, Varriale J, Fray EJ, Zitzmann C, MacLeod H, Lai J, Singhal A, Moskovljevic M, Garcia MA, Lopez BM, Hariharan V, Rhodehouse K, Lynn K, Tebas P, Mounzer K, Montaner LJ, Benko E, Kovacs C, Hoh R, Simonetti FR, Laird GM, Deeks SG, Ribeiro RM, Perelson AS, Siliciano RF, Siliciano JM | The Journal of clinical investigation | 37463049 | J Clin Invest | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37463049 |
| Selective targeting of HIV-infected clones by cognate peptide stimulation and antiproliferative drugs. | Dragoni F, Sop J, Gurumurthy I, Beckey TP, Smith KN, Simonetti FR, Blankson JN | The Journal of clinical investigation | 41118390 | J Clin Invest | 2025 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/41118390 |
| Proviruses in CD4(+) T cells reactive to autologous antigens contribute to nonsuppressible HIV-1 viremia. | Wu F, Moskovljevic M, Dragoni F, Jayaraman S, Board NL, Camilo-Contreras A, Bernal S, Hariharan V, Zhang H, Lai J, Singhal A, Poulin S, Chano F, Chamberland A, Tremblay C, Zoltick M, Hoffmann CJ, Jones JL, Larman HB, Montaner LJ, Siliciano JD, Siliciano RF, Simonetti FR | Science translational medicine | 40802737 | Sci Transl Med | 2025 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/40802737 |
| Clonally expanded HIV-1 proviruses with 5'-leader defects can give rise to nonsuppressible residual viremia. | White JA, Wu F, Yasin S, Moskovljevic M, Varriale J, Dragoni F, Camilo-Contreras A, Duan J, Zheng MY, Tadzong NF, Patel HB, Quiambao JMC, Rhodehouse K, Zhang H, Lai J, Beg SA, Delannoy M, Kilcrease C, Hoffmann CJ, Poulin S, Chano F, Tremblay C, Cherian J, Barditch-Crovo P, Chida N, Moore RD, Summers MF, Siliciano RF, Siliciano JD, Simonetti FR | The Journal of clinical investigation | 36602866 | J Clin Invest | 2023 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/36602866 |
| SIV proviruses seeded later in infection are harbored in short-lived CD4(+) T cells. | Sambaturu N, Fray EJ, Hariharan V, Wu F, Zitzmann C, Simonetti FR, Barouch DH, Siliciano JD, Siliciano RF, Ribeiro RM, Perelson AS, Molina-París C, Leitner T | Cell reports | 40327506 | Cell Rep | 2025 May 27 | https://www.ncbi.nlm.nih.gov/pubmed/40327506 |
| Mild HIV-specific selective forces overlaying natural CD4+ T cell dynamics explain the clonality and decay dynamics of HIV reservoir cells. | Reeves DB, Rigau DN, Romero A, Zhang H, Simonetti FR, Varriale J, Hoh R, Zhang L, Smith KN, Montaner LJ, Rubin LH, Gange SJ, Roan NR, Tien PC, Margolick JB, Peluso MJ, Deeks SG, Schiffer JT, Siliciano JD, Siliciano RF, Antar AAR | Cell systems | 40987290 | Cell Syst | 2025 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/40987290 |
| Prolonged quadriceps latency during gait early after anterior cruciate ligament injury predicts radiographic knee osteoarthritis 6-years after anterior cruciate ligament reconstruction. | Ito N, Capin JJ, Arhos EK, Wellsandt E, Pohlig RT, Buchanan TS, Snyder-Mackler L | Clinical biomechanics (Bristol, Avon) | 38945068 | Clin Biomech (Bristol) | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38945068 |
| Activity levels across the intensity spectrum in athletes: a systematic review protocol. | Capin JJ, Ridgers ND, Street JH, Fial A, Tomkinson GR | BMJ open sport & exercise medicine | 39161555 | BMJ Open Sport Exerc Med | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39161555 |
| Midlife health crisis of former competitive athletes: dissecting their experiences via qualitative study. | Capin JJ, Wolf TL, Street JH, Smith CS, Lennon SL, Farquhar WB, Hunter SK, Piacentine LB | BMJ open sport & exercise medicine | 38736641 | BMJ Open Sport Exerc Med | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38736641 |
| Long-term function, body composition and cardiometabolic health in midlife former athletes: a scoping review. | Street JH, Boos ZP, Fial A, Lennon SL, Smith CS, Creasy SA, Hunter SK, Farquhar WB, Capin JJ | BMJ open sport & exercise medicine | 37920279 | BMJ Open Sport Exerc Med | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37920279 |
| Sport training day affects adolescent athletes' sleep schedules. | Larson A, Street JH, de Guia R, Capin JJ | Frontiers in sports and active living | 41675555 | Front Sports Act Living | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41675555 |
| The paradox of sport: adolescent athletes are highly sedentary across competition, practice, and rest days. | Street JH, Larson AM, de Guia R, Bansal N, Hunter SK, Capin JJ | BMC sports science, medicine & rehabilitation | 41572326 | BMC Sports Sci Med Rehabil | 2026 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/41572326 |
| Transitioning to life after sport: empowering former college varsity athletes to live more healthfully. | Piacentine LB, Wolf TL, Capin JJ | Frontiers in sports and active living | 41602799 | Front Sports Act Living | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41602799 |
| Tumor irradiation promotes antigen dressing of dendritic cells to enhance CAR T cell persistence and efficacy in lung metastases. | Navarre S, Ishibashi MN, Nair A, Reyes-Torres I, Belabed M, Halasz L, Park MD, Mattiuz R, Ounadjela M, Gunset G, Mansilla-Soto J, Feucht J, Cabriolu A, Le Berichel J, Birbrair A, Eyquem J, Brown BD, Merad M, Sadelain M, Ahmed J | Nature cancer | 42174275 | Nat Cancer | 2026 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/42174275 |
| A caste differentiation mutant elucidates the evolution of socially parasitic ants. | Trible W, Chandra V, Lacy KD, Limón G, McKenzie SK, Olivos-Cisneros L, Arsenault SV, Kronauer DJC | Current biology : CB | 36858043 | Curr Biol | 2023 Mar 27 | https://www.ncbi.nlm.nih.gov/pubmed/36858043 |
| Sialyl-Tn serves as a potential therapeutic target for ovarian cancer. | Al-Alem L, Prendergast JM, Clark J, Zarrella B, Zarrella DT, Hill SJ, Growdon WB, Pooladanda V, Spriggs DR, Cramer D, Elias KM, Nazer RI, Skates SJ, Behrens J, Dransfield DT, Rueda BR | Journal of ovarian research | 38566237 | J Ovarian Res | 2024 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/38566237 |
| The ORFIUS complex regulates ORC2 localization at replication origins. | Yang Z, Mogre S, He R, Berdan EL, Ho Sui SJ, Hill SJ | NAR cancer | 38288445 | NAR Cancer | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38288445 |
| Enhanced Efficacy of Simultaneous PD-1 and PD-L1 Immune Checkpoint Blockade in High-Grade Serous Ovarian Cancer. | Wan C, Keany MP, Dong H, Al-Alem LF, Pandya UM, Lazo S, Boehnke K, Lynch KN, Xu R, Zarrella DT, Gu S, Cejas P, Lim K, Long HW, Elias KM, Horowitz NS, Feltmate CM, Muto MG, Worley MJ Jr, Berkowitz RS, Matulonis UA, Nucci MR, Crum CP, Rueda BR, Brown M, Liu XS, Hill SJ | Cancer research | 33158814 | Cancer Res | 2021 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/33158814 |
| Germline and Somatic Fumarate Hydratase Testing in Atypical Uterine Leiomyomata. | Kipnis LM, Breen KM, Koeller DR, Levine AS, Yang Z, Jun H, Tayob N, Stokes SM, Hayes CP, Ghazani AA, Hill SJ, Rana HQ | Cancer prevention research (Philadelphia, Pa.) | 38638033 | Cancer Prev Res (Phila) | 2024 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/38638033 |
| Targeting Galectin 3 illuminates its contributions to the pathology of uterine serous carcinoma. | Matoba Y, Zarrella DT, Pooladanda V, Azimi Mohammadabadi M, Kim E, Kumar S, Xu M, Qin X, Ray LJ, Devins KM, Kumar R, Kononenko A, Eisenhauer E, Veillard IE, Yamagami W, Hill SJ, Sarosiek KA, Yeku OO, Spriggs DR, Rueda BR | British journal of cancer | 38438589 | Br J Cancer | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38438589 |
| Functional Profiling of p53 and RB Cell Cycle Regulatory Proficiency Suggests Mechanism-Driven Molecular Stratification in Endometrial Carcinoma. | Yang Z, Mogre S, Jun H, He R, Ghosh Chaudhary S, Bhattarai UR, Ho Sui SJ, Matulonis UA, Lazo S, Shetty A, Cameron A, Nguyen QD, Hill SJ | Cancer research communications | 39932274 | Cancer Res Commun | 2025 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/39932274 |
| Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1-AKT-p53 Interactions. | Lynch KN, Liu JF, Kesten N, Chow KH, Shetty A, He R, Afreen MF, Yuan L, Matulonis UA, Growdon WB, Muto MG, Horowitz NS, Feltmate CM, Worley MJ Jr, Berkowitz RS, Crum CP, Rueda BR, Hill SJ | Cancers | 34063609 | Cancers (Basel) | 2021 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/34063609 |
| School Absenteeism and Neighborhood Deprivation and Threat: Utilizing the Child Opportunity Index to Assess for Neighborhood-Level Disparities in Passaic County, NJ. | Opara I, Thorpe D, Lardier DT Jr | Urban education | 39669403 | Urban Educ (Beverly Hills Calif) | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39669403 |
| Correction: Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 39474034 | Urban Rev | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39474034 |
| Applying a community-engaged participatory machine learning model. | Asabor EN, Aneni K, Weerakoon S, Opara I | American journal of community psychology | 39279135 | Am J Community Psychol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39279135 |
| A Qualitative Exploration on Risk and Protective Factors of Substance Use Among Black Adolescent Girls. | Opara I, Brooks-Stephens JR, Aneni K, Asabor EN, Weerakoon SM, Duran-Becerra B | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 38748661 | J Clin Child Adolesc Psychol | 2026 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/38748661 |
| Measuring Intrapersonal Psychological Empowerment and Ethnic Identity: Highlighting Strengths of Urban Black Girls. | Opara I, Lardier DT Jr, Garcia-Reid P, Reid RJ | Youth & society | 35813075 | Youth Soc | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35813075 |
| Associations between Parent-Child Communication on Sexual Health and Drug Use and Use of Drugs during Sex among Urban Black Youth. | Boyd DT, Opara I, Quinn CR, Waller B, Ramos SR, Duncan DT | International journal of environmental research and public health | 34068128 | Int J Environ Res Public Health | 2021 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/34068128 |
| Racial/ethnic disparities in PM(2.5)-attributable cardiovascular mortality burden in the United States. | Ma Y, Zang E, Opara I, Lu Y, Krumholz HM, Chen K | Nature human behaviour | 37653149 | Nat Hum Behav | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37653149 |
| Examining the integrated model of the interpersonal-psychological theory of suicide and intersectionality theory among Black male adolescents. | Douglas RD, Alli JO, Gaylord-Harden N, Opara I, Gilreath T | Suicide & life-threatening behavior | 38411036 | Suicide Life Threat Behav | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38411036 |
| Assessing the Prevalence Rates of Internalizing Symptomatology Among Multiracial Adolescents in the United States: A Systematic Review. | Henson-García M, Weerakoon SM, Duncan C, Choe T, Opara I, A Baker K, L Sterling K, Messiah SE | Child psychiatry and human development | 38042957 | Child Psychiatry Hum Dev | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38042957 |
| Teaching Note-#BlackGirlsMatter and the Social Work Curriculum: Integrating Intersectionality Within Social Work Education. | Opara I, Brown TL | Journal of social work education | 36874948 | J Soc Work Educ | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36874948 |
| Adolescent Polysubstance Use and Co-Occurring Weapon Carrying, Bullying Victimization, and Depressive Symptomology: Patterns and Differences in the United States. | Weerakoon SM, Henson-Garcia M, Abraham A, Vidot DC, Messiah SE, Opara I | Child psychiatry and human development | 37477824 | Child Psychiatry Hum Dev | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37477824 |
| Role of the Intersections of Gender, Race and Sexual Orientation in the Association between Substance Use Behaviors and Sexually Transmitted Infections in a National Sample of Adults with Recent Criminal Legal Involvement. | Harvey TD, Opara I, Wang EA | International journal of environmental research and public health | 35409785 | Int J Environ Res Public Health | 2022 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/35409785 |
| A Systematic Review on Sexual Health and Drug Use Prevention Interventions for Black Girls. | Opara I, Pierre K, Assan MA, Scheinfeld L, Alves C, Cross K, Lizarraga A, Brawner B | International journal of environmental research and public health | 35328864 | Int J Environ Res Public Health | 2022 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/35328864 |
| Hair-esteem toolkit for Black girls: The development of a self-esteem toolkit for Black adolescent girls centering hair as a tool for empowerment. | Hussett-Richardson S, Sissoko GD, Opara I | Journal of research on adolescence : the official journal of the Society for Research on Adolescence | 41514456 | J Res Adolesc | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41514456 |
| Development of an Intervention for Managing Adolescent Anxiety Using Community-Based Participatory Methods: Protocol. | Opara I, Pagan C, Rose RE, Duran-Becerra B, Mwai C, Jadhav S, Valles H, Aneni K | JMIR research protocols | 41172343 | JMIR Res Protoc | 2025 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/41172343 |
| Intrapersonal psychological empowerment profiles on ethnic identity, social support, and lifetime drug use among Hispanic adolescent girls. | Opara I, Lardier DT Jr, Fernandez Y, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 32787746 | J Ethn Subst Abuse | 2022 Jul-Sep | https://www.ncbi.nlm.nih.gov/pubmed/32787746 |
| Parenting profiles of academic and racial socialization: Associations with academic engagement and academic self-beliefs of African American adolescents. | Metzger IW, Cooper SM, Griffin CB, Golden AR, Opara I, Ritchwood TD | Journal of school psychology | 32988462 | J Sch Psychol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32988462 |
| Sociopolitical control as a mediator between ethnic identity and social support on 30-day drug use among black girls. | Opara I, Hill AV, Calhoun A, Francois M, Alves C, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 34533434 | J Ethn Subst Abuse | 2023 Jul-Sep | https://www.ncbi.nlm.nih.gov/pubmed/34533434 |
| Structural indicators of suicide: an exploration of state-level risk factors among Black and White people in the United States, 2015-2019. | Robertson RA, Standley CJ, Gunn JF 3rd, Opara I | Journal of public mental health | 36185543 | J Public Ment Health | 2022 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/36185543 |
| Reframing Sexual Health for Black Girls and Women in HIV/STI Prevention Work: Highlighting the Role of Identity and Interpersonal Relationships. | Opara I, Abrams JA, Cross K, Amutah-Onukagha N | International journal of environmental research and public health | 34831855 | Int J Environ Res Public Health | 2021 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/34831855 |
| Mental Health Burden among Black Adolescents: The Need for Better Assessment, Diagnosis and Treatment Engagement. | Opara I, Weissinger GM, Lardier DT Jr, Lanier Y, Carter S, Brawner BM | Social work in mental health | 34248423 | Soc Work Ment Health | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34248423 |
| A Spatial Analysis of Alcohol Outlet Density Type, Abandoned Properties, and Police Calls on Aggravated Assault Rates in a Northeastern U.S. City. | Lardier DT, Opara I, Lin Y, Roach E, Herrera A, Garcia-Reid P, Reid RJ | Substance use & misuse | 34210249 | Subst Use Misuse | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34210249 |
| Symptoms of distress during the COVID-19 pandemic in the United States. | Okafor CN, Asare M, Bautista KJ, Opara I | American journal of health studies | 34335012 | Am J Health Stud | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34335012 |
| HIV knowledge and protective factors among racial-ethnic minority youth: Moderation by Ethnic identity and LGBQ+ identity. | Lardier DT Jr, Opara I, Asabor EN, Bell F, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 39131490 | J LGBT Youth | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39131490 |
| Coping in the Time of COVID-19: Buffering Stressors With Coping Strategies. | Okafor CN, Bautista KJ, Asare M, Opara I | Journal of loss & trauma | 35173557 | J Loss Trauma | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35173557 |
| Faith Leaders' Perspectives on Involvement in HIV Prevention for Urban Black Youth in New Jersey, USA. | Opara I, Pierre K, Gabriel C, Cross K, Clark CML, Rutledge JD | Religions | 41536578 | Religions (Basel) | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41536578 |
| Human immunodeficiency virus vulnerability and pre-exposure prophylaxis awareness among adolescent girls and young women in Cameroon: A cross-sectional study. | Oh S, Nforbewing Ndenkeh J Jr, Opara I, Conserve DF, Nelson LE, Batubara IMS, Bediang G, Yumo H, Ni Z | Interdisciplinary nursing research | 40893149 | Interdiscip Nurs Res | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40893149 |
| The role of sleep in the relationship between racial discrimination and suicide ideation among black girls: A path analysis. | Opara I, Sissoko GD, Wan X, Weerakoon SM | Journal of affective disorders | 41422961 | J Affect Disord | 2026 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/41422961 |
| Empowerment in prevention: a qualitative inquiry into Black girl-centred strategies for reducing HIV/STI and drug misuse risk. | Opara I, Asabor E, Rutledge J, Brooks Stephens JR, Cayo S, Duran-Becerra B, Abrams J | Sexual and reproductive health matters | 39876818 | Sex Reprod Health Matters | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39876818 |
| Spatial Associations of Alcohol Outlet Density with Neighborhood Crime and Child Opportunity: A Hierarchical Bayesian Ecological Study. | Weerakoon SM, Takenaka BP, Srikanth N, Warren JL, Opara I | Substance use & misuse | 40289361 | Subst Use Misuse | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40289361 |
| A latent profile analysis of psychological sense of community and ethnic identity among racial-ethnic minority young adults from the southwestern United States. | Lardier DT Jr, Opara I, Roach E | Journal of community psychology | 34402065 | J Community Psychol | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34402065 |
| Alcohol Use Cravings as a Mediator Between Associated Risk Factors on Increased Alcohol Use among Youth Adults in New York During the COVID-19 Pandemic. | Opara I, Malik S, Lardier DT Jr, Gamble-George J, Kelly RJ, Okafor CN, Greene RN, Parisi D | Alcoholism treatment quarterly | 34898835 | Alcohol Treat Q | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34898835 |
| The brief sense of community scale: Testing dimensionality and measurement invariance by gender among Hispanic/Latinx youth. | Lardier DT Jr, Opara I, Cantu I, Garcia-Reid P, Reid RJ | Journal of community psychology | 33938003 | J Community Psychol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33938003 |
| Testing the Factor Structure of the Brief Sense of Community Scale among Black Girls and the Relationship with Ethnic Identity, Empowerment and Social Support. | Opara I, Lardier DT, Garcia-Reid P, Reid RJ | Children and youth services review | 34305217 | Child Youth Serv Rev | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34305217 |
| The Association Between Racial Attitudes, Alcohol Use and Mood Disorders Among Black Adolescents. | Opara I, Lardier DT, Boyd D, Boateng ACO, Brawner BM | Journal of prevention (2022) | 36156761 | J Prev (2022) | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36156761 |
| Utilizing Community-Centered Approaches to Address Black Maternal Mortality. | Falako S, Okoli N, Boateng MO, Sandoval J, Gumudavelly D, Larsuel S, Opara I | Health education & behavior : the official publication of the Society for Public Health Education | 37525982 | Health Educ Behav | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37525982 |
| Brief Parent-Child Substance Use Education Intervention for Black Families in Urban Cities in New Jersey: Protocol for a Formative Study Design. | Opara I, Pierre K, Cayo S, Aneni K, Mwai C, Hogue A, Becker S | JMIR research protocols | 38722676 | JMIR Res Protoc | 2024 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/38722676 |
| Young Adults at the National Epicenter of the COVID-19 Outbreak: Understanding the Impact and Future Challenges of Social Distancing on Mental Health Outcomes. | Malik S, Opara I, Lardier DT Jr, Younger J, Greene RN | International journal of environmental research and public health | 38248498 | Int J Environ Res Public Health | 2023 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/38248498 |
| Relationship between suicide ideation and attempts, bully victimization, dating violence, and depressive symptoms among Black and Hispanic youth. | Opara I, Weerakoon SM, Brooks Stephens JR, Choe T, Gunn JF 3rd, Thrasher SS | Suicide & life-threatening behavior | 37933468 | Suicide Life Threat Behav | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37933468 |
| Racial Self-Efficacy and Ethnic Identity in the Context of Neighborhood Violence and Internalizing Symptoms Among Black and Latinx youth: An Application of the Minority Stress Theory. | Weerakoon SM, Henson-Garcia M, Rose R, Lindsay J, Srikanth N, Opara I | Community health equity research & policy | 41337681 | Community Health Equity Res Policy | 2025 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/41337681 |
| Strong Black Women: Linking Stereotypes, Stress, and Overeating Among a Sample of Black Female College Students. | Godbolt D, Opara I, Amutah-Onukagha N | Journal of black studies | 36710718 | J Black Stud | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36710718 |
| Predictors of HIV and STI testing among sexually active Black adolescents: results from YRBSS 2019-2021. | Weerakoon SM, Srikanth N, Aivadyan C, Takenaka B, Rose R, Rutledge JD, Sissoko G, Opara I | Journal of HIV/AIDS & social services | 41059105 | J HIV AIDS Soc Serv | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41059105 |
| Black Adolescent Females' Perceptions of PrEP for HIV Risk Reduction. | Budge M, Opara I, Weser VU, Sands BE, Hieftje KD | Journal of the International Association of Providers of AIDS Care | 37853731 | J Int Assoc Provid AIDS Care | 2023 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/37853731 |
| Effects of Brief Interventions on Internalizing Symptoms and Substance Use in Youth: A Systematic Review. | McDanal R, Parisi D, Opara I, Schleider JL | Clinical child and family psychology review | 34731373 | Clin Child Fam Psychol Rev | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34731373 |
| Ethnic Identity, Empowerment, Social Support and Sexual Risk Behaviors Among Black Adolescent Girls: Examining Drug Use as a Mediator. | Opara I, Rivera Rodas EI, Garcia-Reid P, Reid RJ | Child & adolescent social work journal : C & A | 35462639 | Child Adolesc Social Work J | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35462639 |
| How Black Teen Girls Navigate Social Media to Form Romantic Relationships. | Weser VU, Opara I, Sands BE, Fernandes CF, Hieftje KD | Social media + society | 34858631 | Soc Media Soc | 2021 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/34858631 |
| Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 38463537 | Urban Rev | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38463537 |
| Psychological sense of community, community civic participation, and ethnic identity on social justice orientation and psychological empowerment between LGBQ and Non-LGBQ youth of color. | Lardier DT, Opara I, Brammer MK, Pinto SA, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 36855462 | J LGBT Youth | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36855462 |
| Feeling Invisible and Unheard: A Qualitative Exploration of Gendered-Racist Stereotypes Influence on Sexual Decision Making and Mistreatment of Black Teen Girls. | Opara I, Weser V, Sands B, Fernandes CF, Hussett-Richardson S, Hieftje K | Youth & society | 35812173 | Youth Soc | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35812173 |
| What happens when we ask? A phenomenological focus group on HIV prevention and sexual health education among emancipated foster care youth. | Opara I, Lizarraga A, Lardier DT, Herrera A, Garcia-Reid P, Reid RJ | Children and youth services review | 35910532 | Child Youth Serv Rev | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35910532 |
| Addressing Gendered Racism Against Black Girls Using a Strengths-Based Empowerment-Intersectional Framework for Sexual Health and Substance Use Prevention Programming. | Opara I, Martin R, Hill AV, Calhoun A | Health promotion practice | 37166152 | Health Promot Pract | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37166152 |
| A mixed-methods assessment of off-duty police shootings in a media-curated database. | Asabor EN, Lett E, Mosely B, Boone CA, Sundaresan S, Wong TA, Majumder MS | Health services research | 37276031 | Health Serv Res | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37276031 |
| Learning from community-based HIV prevention to inform control and mitigation of the COVID-19 pandemic. | Abrams JA, Rutledge J, Opara I | Preventive medicine | 36750159 | Prev Med | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36750159 |
| Power to the People: Measuring Social Media and Mass Media Impact for Promotion and Tenure in Social and Applied Sciences. | Metzger IW, Jernigan-Noesi M, Jones SCT, Turner EA, Saleem F, Jackson J, Anderson RE, Bartolomeo LA, Tineo P, Opara I | Higher education policy | 40401236 | High Educ Policy | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40401236 |
| "It Makes Me Feel like I Can Make a Difference": A Qualitative Exploration of Peer Mentoring with Black and Hispanic High School Students. | Opara I, Metzger IW, Dawoud S, Pierre K, Assan MA, Garcia-Reid P, Reid RJ | Youth (Basel, Switzerland) | 39555142 | Youth (Basel) | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/39555142 |
| Increasing HIV/AIDS knowledge among urban ethnic minority youth: Findings from a community-based prevention intervention program. | Lardier DT Jr, Opara I, Reid RJ, Garcia-Reid P, Herrera A, Cantu I | Journal of HIV/AIDS & social services | 34177389 | J HIV AIDS Soc Serv | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34177389 |
| Ethnic Identity as a Moderator Between HIV Knowledge, Viral Hepatitis Knowledge, and Psychological Antecedents Among Racial-Ethnic Minority Youth Living in an Urban Community. | Opara I, Lardier DT Jr, Durkee MI, Garcia-Reid P, Reid RJ | Journal of racial and ethnic health disparities | 34041704 | J Racial Ethn Health Disparities | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34041704 |
| Understanding Neighborhoods' Impact on Youth Substance Use and Mental Health Outcomes in Paterson, New Jersey: Protocol for a Community-Based Participatory Research Study. | Opara I, R Leonard N, Thorpe D, Kershaw T | JMIR research protocols | 34047712 | JMIR Res Protoc | 2021 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/34047712 |
| Intersectional Effects of Sexual Orientation Concealment, Internalized Homophobia, and Gender Expression on Sexual Identity and HIV Risk Among Sexual Minority Men of Color: A Path Analysis. | Ramos SR, Lardier DT Jr, Opara I, Turpin RE, Boyd DT, Gutierrez JI Jr, Williams CN, Nelson LE, Kershaw T | The Journal of the Association of Nurses in AIDS Care : JANAC | 34101701 | J Assoc Nurses AIDS Care | 2021 Jul-Aug 01 | https://www.ncbi.nlm.nih.gov/pubmed/34101701 |
| Sexual Health and Drug Use Prevention for Black Girls (The Dreamer Girls Project): Protocol for an Intervention Development. | Opara I, Gabriel C, Duran-Becerra B, Bond K, Hill AV, Hussett-Richardson S, Alves C, Kershaw T | JMIR research protocols | 37556188 | JMIR Res Protoc | 2023 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/37556188 |
| Racial Differences in 1-Year Mortality after Hospitalization for Chronic Obstructive Pulmonary Disease in the United States. | Jain S, Priya A, Pekow P, Spitzer K, Walkey AJ, Opara I, Krumholz HM, Lindenauer PK | Annals of the American Thoracic Society | 37943953 | Ann Am Thorac Soc | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37943953 |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | bioRxiv : the preprint server for biology | 39026856 | bioRxiv | 2024 Jul 13 | https://www.ncbi.nlm.nih.gov/pubmed/39026856 |
| Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition. | Vollger MR, Korlach J, Eldred KC, Swanson E, Underwood JG, Cheng YH, Ranchalis J, Mao Y, Blue EE, Schwarze U, Munson KM, Saunders CT, Wenger AM, Allworth A, Chanprasert S, Duerden BL, Glass I, Horike-Pyne M, Kim M, Leppig KA, McLaughlin IJ, Ogawa J, Rosenthal EA, Sheppeard S, Sherman SM, Strohbehn S, Yuen AL, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Reh TA, Byers PH, Bamshad MJ, Hisama FM, Jarvik GP, Sancak Y, Dipple KM, Stergachis AB | bioRxiv : the preprint server for biology | 37808736 | bioRxiv | 2023 Sep 27 | https://www.ncbi.nlm.nih.gov/pubmed/37808736 |
| Principles and functional consequences of plasmid chromatinization in mammalian cells. | Mallory BJ, Tullius TW, Biar CG, Gustafson JA, Bohaczuk SC, Dubocanin D, Starita LM, Stergachis AB | bioRxiv : the preprint server for biology | 40501650 | bioRxiv | 2025 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/40501650 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis AB, O'Toole E, Biggins S | Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology | 40608157 | Chromosome Res | 2025 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/40608157 |
| The regulatory potential of transposable elements in maize. | Bubb KL, Hamm MO, Tullius TW, Min JK, Ramirez-Corona B, Mueth NA, Ranchalis J, Mao Y, Bergstrom EJ, Vollger MR, Trapnell C, Cuperus JT, Stergachis AB, Queitsch C | Nature plants | 40360747 | Nat Plants | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40360747 |
| Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions. | Girskis KM, Stergachis AB, DeGennaro EM, Doan RN, Qian X, Johnson MB, Wang PP, Sejourne GM, Nagy MA, Pollina EA, Sousa AMM, Shin T, Kenny CJ, Scotellaro JL, Debo BM, Gonzalez DM, Rento LM, Yeh RC, Song JHT, Beaudin M, Fan J, Kharchenko PV, Sestan N, Greenberg ME, Walsh CA | Neuron | 34478631 | Neuron | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34478631 |
| Conservation of dichromatin organization along regional centromeres. | Dubocanin D, Hartley GA, Sedeño Cortés AE, Mao Y, Hedouin S, Ranchalis J, Agarwal A, Logsdon GA, Munson KM, Real T, Mallory BJ, Eichler EE, Biggins S, O'Neill RJ, Stergachis AB | Cell genomics | 40147439 | Cell Genom | 2025 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/40147439 |
| Evaluation of N (6)-methyldeoxyadenosine antibody-based genomic profiling in eukaryotes. | Debo BM, Mallory BJ, Stergachis AB | Genome research | 36788024 | Genome Res | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36788024 |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | Genome research | 39653420 | Genome Res | 2024 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/39653420 |
| Clinical utility of brain MRS imaging of patients with adult-onset non-cirrhotic hyperammonemia. | Stergachis AB, Krier JB, Merugumala SK, Berry GT, Lin AP | Molecular genetics and metabolism reports | 33763331 | Mol Genet Metab Rep | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33763331 |
| Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. | Isaac RS, Tullius TW, Hansen KG, Dubocanin D, Couvillion M, Stergachis AB, Churchman LS | Nature structural & molecular biology | 38347148 | Nat Struct Mol Biol | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38347148 |
| The regulatory potential of transposable elements in maize. | Bubb KL, Hamm MO, Tullius TW, Min JK, Ramirez-Corona B, Mueth NA, Ranchalis J, Mao Y, Bergstrom EJ, Vollger MR, Trapnell C, Cuperus JT, Stergachis AB, Queitsch C | bioRxiv : the preprint server for biology | 39026747 | bioRxiv | 2025 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/39026747 |
| Long-read transcriptome analysis using IsoRanker for identifying pathogenic variants in Mendelian conditions. | Cheng YH, Sedeño-Cortés AE, Ranchalis JE, Munson KM, Vollger MR, Balton E, Genetti CA, Undiagnosed Diseases Network, Genomics Research to Elucidate the Genetics of Rare Diseases consortium, University of Washington Center for Rare Diseases Research, Wojcik MH, Beggs AH, Bamshad MJ, Wei CL, Dipple KM, Kumar RD, Blue EE, Jarvik G, Chong JX, Witten DM, O'Donnell-Luria A, Stergachis AB | medRxiv : the preprint server for health sciences | 41292655 | medRxiv | 2025 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/41292655 |
| Mapping single-cell diploid chromatin fiber architectures using DAF-seq. | Swanson EG, Mao Y, Mallory BJ, Vollger MR, Bohaczuk SC, Oliveira CB, Lyon DB, Ranchalis J, Parmalee NL, Cohen BA, Bennett JT, Stergachis AB | Nature biotechnology | 41339527 | Nat Biotechnol | 2025 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/41339527 |
| CUT&TIME captures the history of open chromatin in developing neurons. | Eldred KC, Wooten M, Janssens DH, Hahn J, Neph SJ, Edgerton SJ, Wyatt-Draher G, Sherman SM, Ranchalis JE, Stergachis AB, Reh TA, Henikoff S | bioRxiv : the preprint server for biology | 40950047 | bioRxiv | 2025 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/40950047 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis A, O'Toole E, Biggins S | Research square | 40313741 | Res Sq | 2025 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/40313741 |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | bioRxiv : the preprint server for biology | 37131601 | bioRxiv | 2023 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/37131601 |
| Dominant-negative variant in SLC1A4 causes an autosomal dominant epilepsy syndrome. | Pujol-Giménez J, Mirzaa G, Blue EE, Albano G, Miller DE, Allworth A, Bennett JT, Byers PH, Chanprasert S, Chen J, Doherty D, Folta AB, Gillentine MA, Glass I, Hing A, Horike-Pyne M, Leppig KA, Parhin A, Ranchalis J, Raskind WH, Rosenthal EA, Schwarze U, Sheppeard S, Strohbehn S, Sybert VP, Timms A, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG)a, Undiagnosed Diseases Network (UDN), Bamshad MJ, Hisama FM, Jarvik GP, Dipple KM, Hediger MA, Stergachis AB | Annals of clinical and translational neurology | 37194416 | Ann Clin Transl Neurol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37194416 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis A, O'Toole E, Biggins S | bioRxiv : the preprint server for biology | 39975131 | bioRxiv | 2025 Jan 27 | https://www.ncbi.nlm.nih.gov/pubmed/39975131 |
| Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition. | Vollger MR, Korlach J, Eldred KC, Swanson E, Underwood JG, Bohaczuk SC, Mao Y, Cheng YH, Ranchalis J, Blue EE, Schwarze U, Munson KM, Saunders CT, Wenger AM, Allworth A, Chanprasert S, Duerden BL, Glass I, Horike-Pyne M, Kim M, Leppig KA, McLaughlin IJ, Ogawa J, Rosenthal EA, Sheppeard S, Sherman SM, Strohbehn S, Yuen AL, Stacey AW, University of Washington Center for Rare Disease Research, Undiagnosed Diseases Network, Reh TA, Byers PH, Bamshad MJ, Hisama FM, Jarvik GP, Sancak Y, Dipple KM, Stergachis AB | Nature genetics | 39880924 | Nat Genet | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39880924 |
| Single chromatin fiber profiling and nucleosome position mapping in the human brain. | Peter CJ, Agarwal A, Watanabe R, Kassim BS, Wang X, Lambert TY, Javidfar B, Evans V, Dawson T, Fridrikh M, Girdhar K, Roussos P, Nageshwaran SK, Tsankova NM, Sebra RP, Vollger MR, Stergachis AB, Hasson D, Akbarian S | Cell reports methods | 39631398 | Cell Rep Methods | 2024 Dec 16 | https://www.ncbi.nlm.nih.gov/pubmed/39631398 |
| RNA polymerases reshape chromatin architecture and couple transcription on individual fibers. | Tullius TW, Isaac RS, Dubocanin D, Ranchalis J, Churchman LS, Stergachis AB | Molecular cell | 39191261 | Mol Cell | 2024 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/39191261 |
| Genetic diversity and regulatory features of human-specific NOTCH2NL duplications. | Real TD, Hebbar P, Yoo D, Antonacci F, Pačar I, Diekhans M, Mikol GJ, Popoola OG, Mallory BJ, Vollger MR, Dishuck PC, Guitart X, Rozanski AN, Munson KM, Hoekzema K, Ranchalis JE, Neph SJ, Sedeño-Cortes AE, Paten B, Salama SR, Stergachis AB, Eichler EE | bioRxiv : the preprint server for biology | 40166283 | bioRxiv | 2025 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/40166283 |
| Stable centromere association of the yeast histone variant Cse4 requires its essential N-terminal domain. | Popchock AR, Hedouin S, Mao Y, Asbury CL, Stergachis AB, Biggins S | The EMBO journal | 39809842 | EMBO J | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39809842 |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | Genome research | 38849157 | Genome Res | 2024 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/38849157 |
| A haplotype-resolved view of human gene regulation. | Vollger MR, Swanson EG, Neph SJ, Ranchalis J, Munson KM, Ho CH, Cheng YHH, Sedeño-Cortés AE, Fondrie WE, Bohaczuk SC, Dippel MA, Mao Y, Parmalee NL, Mallory BJ, Harvey WT, Kwon Y, Garcia GH, Hoekzema K, Meyer JG, Cicek M, Eichler EE, Noble WS, Witten DM, Bennett JT, Ray JP, Stergachis AB | bioRxiv : the preprint server for biology | 40501892 | bioRxiv | 2025 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/40501892 |
| A complete diploid human genome benchmark for personalized genomics. | Hansen NF, Dwarshuis N, Ji HJ, Rhie A, Loucks H, Logsdon GA, Vollger MR, Storer JM, Kim J, Adam E, Altemose N, Antipov D, Asri M, Barreira S, Bohaczuk SC, Bzikadze AV, Carioscia SA, Carroll A, Chao KH, Chu Y, Das A, Ebert P, English A, Fleharty M, Fleming LE, Formenti G, Guarracino A, Hartley GA, Jenike K, Kalleberg J, Kang Y, King R, Lipovac J, Mastoras M, Mitchell MW, Negi S, Olson ND, Oshima KK, Paulin LF, Pickett BD, Porubsky D, Ranchalis J, Ranjan D, Rautiainen M, Riethman H, Schnabel RD, Sedlazeck FJ, Shafin K, Sikic M, Solar SJ, Sweeten AP, Timp W, Wagner J, Yoo D, Zhou Y, Garrison E, Eichler EE, Schatz MC, Stergachis AB, O'Neill RJ, Miga KH, Salzberg SL, Koren S, Zook JM, Phillippy AM | bioRxiv : the preprint server for biology | 41000953 | bioRxiv | 2025 Sep 21 | https://www.ncbi.nlm.nih.gov/pubmed/41000953 |
| Protamine lacunae preserve the paternal chromatin landscape in sperm. | Tullius TW, Heuer RA, Bohaczuk SC, Mallory B, Dubocanin D, Ranchalis J, Ayaz A, Mason CE, Seli E, Phillippy AM, Stergachis AB, Lesch BJ | bioRxiv : the preprint server for biology | 41256633 | bioRxiv | 2025 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/41256633 |
| A telomere-to-telomere map of somatic mutation burden and functional impact in cancer. | Sohn MH, Dubocanin D, Vollger MR, Kwon Y, Minkina A, Munson KM, Hart SF, Ranchalis JE, Parmalee NL, Sedeño-Cortés AE, Ou J, Au NY, Bohaczuk S, Carroll B, Frazar CD, Harvey WT, Hoekzema K, Huang MF, Jacques CN, Jensen DM, Kolar JT, Lee R, Lin J, Loy K, Mack T, Mao Y, Pham MM, Ryke E, Smith JD, Sutherlin L, Swanson EG, Weiss JM, Wg SA, Carvalho C, Coorens TH, Harris K, Wei CL, Eichler EE, Altemose N, Bennett JT, Stergachis AB | bioRxiv : the preprint server for biology | 41279560 | bioRxiv | 2025 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/41279560 |
| Full-length isoform sequencing for resolving the molecular basis of Charcot-Marie-Tooth 2A. | Stergachis AB, Blue EE, Gillentine MA, Wang LK, Schwarze U, Cortés AS, Ranchalis J, Allworth A, Bland AE, Chanprasert S, Chen J, Doherty D, Folta AB, Glass I, Horike-Pyne M, Huang AY, Khan AT, Leppig KA, Miller DE, Mirzaa G, Parhin A, Raskind W, Rosenthal EA, Sheppeard S, Strohbehn S, Sybert VP, Tran TT, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Byers PH, Nelson SF, Bamshad MJ, Dipple KM, Jarvik GP, Hoppins S, Hisama FM | bioRxiv : the preprint server for biology | 36798371 | bioRxiv | 2023 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/36798371 |
| Integrating Single-Molecule Sequencing and Deep Learning to Predict Haplotype-Specific 3D Chromatin Organization in a Mendelian Condition. | Dubocanin D, Kalygina A, Franklin JM, Chittenden C, Vollger MR, Neph S, Stergachis AB, Altemose N | bioRxiv : the preprint server for biology | 40166185 | bioRxiv | 2025 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/40166185 |
| RNA polymerases reshape chromatin and coordinate transcription on individual fibers. | Tullius TW, Isaac RS, Ranchalis J, Dubocanin D, Churchman LS, Stergachis AB | bioRxiv : the preprint server for biology | 38187631 | bioRxiv | 2023 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/38187631 |
| Haplotype-Resolved Genomics Reveals Conserved Chromatin Architecture and Epigenetic Constraints of Human Neocentromeres. | Hoyt SJ, Hartley GA, Antopia MC, Tullius TW, Taylor DJ, Tillquist NM, Neph S, Pauloski N, Munson KM, Hoekzema K, Eichler EE, Stergachis AB, Logsdon GA, O'Neill RJ | bioRxiv : the preprint server for biology | 41509222 | bioRxiv | 2025 Dec 25 | https://www.ncbi.nlm.nih.gov/pubmed/41509222 |
| Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics. | Nam AS, Chaligne R, Landau DA | Nature reviews. Genetics | 32807900 | Nat Rev Genet | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32807900 |
| Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation. | Nam AS, Dusaj N, Izzo F, Murali R, Myers RM, Mouhieddine TH, Sotelo J, Benbarche S, Waarts M, Gaiti F, Tahri S, Levine R, Abdel-Wahab O, Godley LA, Chaligne R, Ghobrial I, Landau DA | Nature genetics | 36138229 | Nat Genet | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36138229 |
| CALR-mutated cells are vulnerable to combined inhibition of the proteasome and the endoplasmic reticulum stress response. | Jutzi JS, Marneth AE, Jiménez-Santos MJ, Hem J, Guerra-Moreno A, Rolles B, Bhatt S, Myers SA, Carr SA, Hong Y, Pozdnyakova O, van Galen P, Al-Shahrour F, Nam AS, Mullally A | Leukemia | 36473980 | Leukemia | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36473980 |
| Transcripts of repetitive DNA elements signal to block phagocytosis of hematopoietic stem cells. | Pessoa Rodrigues C, Collins JM, Yang S, Martinez C, Kim JW, Lama C, Nam AS, Alt C, Lin C, Zon LI | Science (New York, N.Y.) | 39264994 | Science | 2024 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/39264994 |
| Co-mapping clonal and transcriptional heterogeneity in somatic evolution via GoT-Multi. | Pak M, Saurty-Seerunghen MS, Wise K, Abera TA, Lama C, Parghi N, Kang T, Sun X, Gao Q, Bao L, Roshal M, Allan JN, Furman RR, Martelotto LG, Nam AS | Cell genomics | 41075791 | Cell Genom | 2026 Jan 14 | https://www.ncbi.nlm.nih.gov/pubmed/41075791 |
| Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition. | Ho CM, Jih J, Lai M, Li X, Goldberg DE, Beck JR, Zhou ZH | Proceedings of the National Academy of Sciences of the United States of America | 34446549 | Proc Natl Acad Sci U S A | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/34446549 |
| Structural parasitology of the malaria parasite Plasmodium falciparum. | Anton L, Cobb DW, Ho CM | Trends in biochemical sciences | 34887149 | Trends Biochem Sci | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34887149 |
| Endogenous structure of antimalarial target PfATP4 reveals an apicomplexan-specific P-type ATPase modulator. | Haile MT, Shukla A, Zhen J, Mather MW, Bhatnagar S, Morrisey JM, Zhang Z, Vaidya AB, Ho CM | Nature communications | 41115914 | Nat Commun | 2025 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/41115914 |
| Integrated structural biology of the native malarial translation machinery and its inhibition by an antimalarial drug. | Anton L, Cheng W, Haile MT, Dziekan JM, Cobb DW, Zhu X, Han L, Li E, Nair A, Lee CL, Wang H, Ke H, Zhang G, Doud EH, Cowman AF, Ho CM | Nature structural & molecular biology | 40825879 | Nat Struct Mol Biol | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40825879 |
| Barriers to Extracting and Harmonizing Glaucoma Testing Data: Gaps, Shortcomings, and the Pursuit of FAIRness. | Radgoudarzi N, Hallaj S, Boland MV, Stagg B, Wang SY, Xu B, Swaminathan SS, Brown EN, Chen A, Sun CQ, Amarasekera DC, Myers JS, Saifee M, Halfpenny W, Dirkes K, Zangwill L, Goetz KE, Hribar M, Baxter SL | Ophthalmology science | 39429240 | Ophthalmol Sci | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39429240 |
| Federated Learning in Glaucoma: A Comprehensive Review and Future Perspectives. | Hallaj S, Chuter BG, Lieu AC, Singh P, Kalpathy-Cramer J, Xu BY, Christopher M, Zangwill LM, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39214457 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39214457 |
| Medical, Environmental, and Social Determinants Associated With Periocular Cutaneous Malignancies in the United States Using the All of Us National Database. | Radgoudarzi N, Dallalzadeh L, Saseendrakumar BR, Guo J, Halfpenny W, Kikkawa DO, Baxter S | Cureus | 39219888 | Cureus | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39219888 |
| Assessment of Missing Data on Glaucoma Severity Among Participants in the NIH All of Us Research Program of the United States. | Acuff KN, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Journal of glaucoma | 39133059 | J Glaucoma | 2025 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/39133059 |
| Relationship Between Glaucoma and Chronic Stress Quantified by Allostatic Load Score in the All of Us Research Program. | Yoo K, Lee C, Baxter SL, Xu BY | American journal of ophthalmology | 39271092 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39271092 |
| Association Between Glucagon-Like Peptide-1 Receptor Agonists Exposure and Intraocular Pressure Change: GLP-1 Receptor Agonists and Intraocular Pressure Change. | Hallaj S, Halfpenny W, Chuter BG, Weinreb RN, Baxter SL, Cui QN | American journal of ophthalmology | 39237049 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39237049 |
| Social Factors Associated with the Risk of Glaucoma Suspect Conversion to Glaucoma: Analysis of the Nationwide All of Us Program. | Wu JH, Halfpenny W, Bu J, Brar M, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 38959998 | Ophthalmol Glaucoma | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/38959998 |
| Towards effective data sharing in ophthalmology: data standardization and data privacy. | Halfpenny W, Baxter SL | Current opinion in ophthalmology | 35819893 | Curr Opin Ophthalmol | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/35819893 |
| Social Determinants of Health Data Availability for Patients with Eye Conditions. | Lee TC, Saseendrakumar BR, Nayak M, Chan AX, McDermott JJ 4th, Shahrvini B, Ye GY, Sitapati AM, Nebeker C, Baxter SL | Ophthalmology science | 35662804 | Ophthalmol Sci | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35662804 |
| Effects of Smoking on Optic Nerve Head Microvasculature Density in Glaucoma. | Eslani M, Nishida T, Weinreb RN, Baxter S, Mahmoudinezhad G, Kamalipour A, Yarmohammadi A, Zangwill LM, Moghimi S | Journal of glaucoma | 35882030 | J Glaucoma | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/35882030 |
| Comparing the Use of DynaMed and UpToDate by Physician Trainees in Clinical Decision-Making: A Randomized Crossover Trial. | Baxter SL, Lander L, Clay B, Bell J, Hansen K, Walker A, Tai-Seale M | Applied clinical informatics | 35108739 | Appl Clin Inform | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35108739 |
| Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database. | Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY | Ophthalmic plastic and reconstructive surgery | 36727790 | Ophthalmic Plast Reconstr Surg | 2023 May-Jun 01 | https://www.ncbi.nlm.nih.gov/pubmed/36727790 |
| Associations between Socioeconomic Factors and Visit Adherence among Patients with Glaucoma in the All of Us Research Program. | Acuff K, Delavar A, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 36746242 | Ophthalmol Glaucoma | 2023 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/36746242 |
| Associations Between Thyroid Eye Disease and Glaucoma Among Those Enrolled in the National Institutes of Health All of Us Research Program. | Delavar A, Radha Saseendrakumar B, Lee TC, Topilow NJ, Ting MA, Liu CY, Korn BS, Weinreb RN, Kikkawa DO, Baxter SL | Ophthalmic plastic and reconstructive surgery | 36394556 | Ophthalmic Plast Reconstr Surg | 2023 Jul-Aug 01 | https://www.ncbi.nlm.nih.gov/pubmed/36394556 |
| Social and Health Care Utilization Factors Associated With Ophthalmic Visit Nonadherence in Glaucoma: An All of Us Study. | Wu JH, Varkhedi V, Radha Saseendrakumar B, Acuff K, Weinreb RN, Baxter SL | Journal of glaucoma | 37671531 | J Glaucoma | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37671531 |
| Gender Disparities in Depression, Stress, and Social Support Among Glaucoma Patients. | Delavar A, Bu JJ, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Translational vision science & technology | 38149963 | Transl Vis Sci Technol | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/38149963 |
| Social determinants associated with loss of an eye in the United States using the All of Us nationwide database. | Chan AX, Radha Saseendrakumar B, Ozzello DJ, Ting M, Yoon JS, Liu CY, Korn BS, Kikkawa DO, Baxter SL | Orbit (Amsterdam, Netherlands) | 34969350 | Orbit | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34969350 |
| Predictive Analytics for Glaucoma Using Data From the All of Us Research Program. | Baxter SL, Saseendrakumar BR, Paul P, Kim J, Bonomi L, Kuo TT, Loperena R, Ratsimbazafy F, Boerwinkle E, Cicek M, Clark CR, Cohn E, Gebo K, Mayo K, Mockrin S, Schully SD, Ramirez A, Ohno-Machado L, All of Us Research Program Investigators | American journal of ophthalmology | 33497675 | Am J Ophthalmol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33497675 |
| Glaucoma Detection and Feature Identification via GPT-4V Fundus Image Analysis. | Jalili J, Jiravarnsirikul A, Bowd C, Chuter B, Belghith A, Goldbaum MH, Baxter SL, Weinreb RN, Zangwill LM, Christopher M | Ophthalmology science | 39877464 | Ophthalmol Sci | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/39877464 |
| Impact of Pupil Dilation on Optical Coherence Tomography Angiography Retinal Microvasculature in Healthy Eyes. | Villatoro G, Bowd C, Proudfoot JA, Manalastas PIC, Nguyen KD, Hou H, Penteado RC, Li AJ, Moghimi S, Ghahari E, Weinreb RN, Zangwill LM | Journal of glaucoma | 32890106 | J Glaucoma | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32890106 |
| Investigation of associations between Piezo1 mechanoreceptor gain-of-function variants and glaucoma-related phenotypes in humans and mice. | Baxter SL, Keenan WT, Athanas AJ, Proudfoot JA, Zangwill LM, Ayyagari R, Liebmann JM, Girkin CA, Patapoutian A, Weinreb RN | Scientific reports | 33149214 | Sci Rep | 2020 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/33149214 |
| Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. | Wu Y, Olvera-Barrios A, Yanagihara R, Kung TH, Lu R, Leung I, Mishra AV, Nussinovitch H, Grimaldi G, Blazes M, Lee CS, Egan C, Tufail A, Lee AY | Ophthalmology | 36154868 | Ophthalmology | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36154868 |
| Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. | Lee CS, Krakauer C, Su YR, Walker RL, Blazes M, McCurry SM, Bowen JD, McCormick WC, Lee AY, Boyko EJ, O'Hare AM, Larson EB, Crane PK | American journal of ophthalmology | 36513155 | Am J Ophthalmol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36513155 |
| Ocular Health and National Data Standards: A Case for Including Visual Acuity in the United States Core Data for Interoperability (USCDI). | Baxter SL, Reed AA, Maa A, Boland MV, Borkar DS, Brown EN, Lum F, Goetz KE | Ophthalmology science | 36570621 | Ophthalmol Sci | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36570621 |
| Implementing clinical informatics tools for primary care-based diabetic retinopathy screening. | Baxter SL, Quackenbush Q, Cerda J, Gregg C, Millen M, Thorne C | The American journal of managed care | 36252175 | Am J Manag Care | 2022 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/36252175 |
| Assessing Usability of Smartwatch Digital Health Devices for Home Blood Pressure Monitoring among Glaucoma Patients. | Bhanvadia SB, Brar MS, Delavar A, Tavakoli K, Saseendrakumar BR, Weinreb RN, Zangwill LM, Baxter SL | Informatics (MDPI) | 36873830 | Informatics (MDPI) | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36873830 |
| Internal carotid artery aneurysm presenting as diplopia via telemedicine during COVID-19. | Baxter SL, Kuo DE, Robbins SL | Journal of telemedicine and telecare | 33412986 | J Telemed Telecare | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/33412986 |
| Social determinants of health and health disparities in glaucoma: A review. | Acuff K, Wu JH, Varkhedi V, Baxter SL | Clinical & experimental ophthalmology | 38385607 | Clin Exp Ophthalmol | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38385607 |
| Proactive Decision Support for Glaucoma Treatment: Predicting Surgical Interventions with Clinically Available Data. | Christopher M, Gonzalez R, Huynh J, Walker E, Radha Saseendrakumar B, Bowd C, Belghith A, Goldbaum MH, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Weinreb RN, Baxter SL, Zangwill LM | Bioengineering (Basel, Switzerland) | 38391627 | Bioengineering (Basel) | 2024 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/38391627 |
| A review of ophthalmology education in the era of generative artificial intelligence. | Heinke A, Radgoudarzi N, Huang BB, Baxter SL | Asia-Pacific journal of ophthalmology (Philadelphia, Pa.) | 39134176 | Asia Pac J Ophthalmol (Phila) | 2024 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/39134176 |
| Ethical considerations for large language models in ophthalmology. | Kalaw FGP, Baxter SL | Current opinion in ophthalmology | 39259616 | Curr Opin Ophthalmol | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39259616 |
| Racial, Ethnic, and Socioeconomic Disparities in Glaucoma Onset and Severity in a Diverse Nationwide Cohort in the United States. | Acuff K, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Journal of glaucoma | 37523618 | J Glaucoma | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37523618 |
| Multi-Ancestry Genome-Wide Association Study in All of Us for Primary Open- Angle Glaucoma. | Tavakoli K, Huang BB, Mirmira T, Ma N, Weinreb RN, Baxter SL | Research square | 41282083 | Res Sq | 2025 Oct 26 | https://www.ncbi.nlm.nih.gov/pubmed/41282083 |
| Association of metformin use with primary open-angle glaucoma using data from the National Institutes of Health All of Us Program. | Sidhu S, Radha Saseendrakumar B, Varkhedi V, Wu JH, Parikh A, Nudleman E, Do JL, Moghimi S, Weinreb RN, Baxter SL | BMJ open ophthalmology | 40940077 | BMJ Open Ophthalmol | 2025 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/40940077 |
| Variations in Using Diagnosis Codes for Defining Age-Related Macular Degeneration Cohorts. | Kalaw FGP, Chen JS, Baxter SL | Informatics (MDPI) | 40012991 | Informatics (MDPI) | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40012991 |
| Associations between healthcare utilization and access and diabetic retinopathy complications using All of Us nationwide survey data. | Chan AX, McDermott Iv JJ, Lee TC, Ye GY, Shahrvini B, Radha Saseendrakumar B, Baxter SL | PloS one | 35704625 | PLoS One | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35704625 |
| Data Sciences and Visual Health Disparities. | Legault G, Nwanyanwu K, Baxter SL | Ophthalmology | 36058740 | Ophthalmology | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36058740 |
| Data Sources for Evaluating Health Disparities in Ophthalmology: Where We Are and Where We Need to Go. | Baxter SL, Nwanyanwu K, Legault G, Lee AY | Ophthalmology | 36058733 | Ophthalmology | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36058733 |
| Healthcare Access and Utilization Among Glaucoma Patients in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of glaucoma | 36223287 | J Glaucoma | 2023 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/36223287 |
| Impact of COVID-19 on the Delivery of Eye Care to Uninsured Diabetic Patients at a Student-Run Free Clinic: A Comprehensive Evaluation of Eye Clinic Performance. | Chuter BG, Lieu A, Dayao JKO, Bu JJ, Chen K, Nishihara T, Baxter SL | Journal of student-run clinics | 36890867 | J Stud Run Clin | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36890867 |
| Trends and practices following the 2016 hydroxychloroquine screening guidelines. | Kalaw FGP, Arnett J, Baxter SL, Walker E, Pedersen B, Borooah S | Scientific reports | 37730825 | Sci Rep | 2023 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/37730825 |
| Availability of Physical Activity Tracking Data from Wearable Devices for Glaucoma Patients. | Bhanvadia SB, Meller L, Madjedi K, Weinreb RN, Baxter SL | Information (Basel) | 37771713 | Information (Basel) | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37771713 |
| Microperimetry Findings in Pentosan Polysulfate Maculopathy. | Most J, Kalaw FGP, Walker E, Arias JD, Charng J, Baxter SL, Nudleman E, Ferreyra H, Freeman WR, Chen FK, Borooah S | Ophthalmology. Retina | 37619623 | Ophthalmol Retina | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37619623 |
| High-Density Lipoproteins Associated with Age-Related Macular Degeneration in the All of Us Research Program. | Chen JS, Esko JD, Walker E, Gordts PLSM, Baxter SL, Toomey CB | Ophthalmology | 39756691 | Ophthalmology | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/39756691 |
| Gap Analysis of Glaucoma Examination Concept Representations within Standard Systemized Nomenclature of Medicine - Clinical Terms. | Hallaj S, Khawaja AP, Rodrigues IAS, Boland MV, Brown EN, Chen A, Stagg BC, Stein JD, Sun CQ, Mahe-Cook AL, Swaminathan SS, Wang SY, Xu BY, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39147325 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39147325 |
| Disparities in Eye Care Utilization Among Refugee and Migrant Populations. | Copado IA, Hallaj S, Radha Saseendrakumar B, Baxter SL | Translational vision science & technology | 38376863 | Transl Vis Sci Technol | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/38376863 |
| Advancing Toward a Common Data Model in Ophthalmology: Gap Analysis of General Eye Examination Concepts to Standard Observational Medical Outcomes Partnership (OMOP) Concepts. | Cai CX, Halfpenny W, Boland MV, Lehmann HP, Hribar M, Goetz KE, Baxter SL | Ophthalmology science | 38025162 | Ophthalmol Sci | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38025162 |
| Evaluation and Optimization of Diabetic Retinopathy Screenings for Uninsured Latinx Patients in a Resource-Limited Student-Run Free Clinic. | Bu JJ, Delavar A, Dayao JK, Lieu A, Chuter BG, Chen K, Nishihara T, Meller L, Camp AS, Lee JE, Baxter SL | Journal of student-run clinics | 38287932 | J Stud Run Clin | 2024 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/38287932 |
| Usability and Clinician Acceptance of a Deep Learning-Based Clinical Decision Support Tool for Predicting Glaucomatous Visual Field Progression. | Chen JS, Baxter SL, van den Brandt A, Lieu A, Camp AS, Do JL, Welsbie DS, Moghimi S, Christopher M, Weinreb RN, Zangwill LM | Journal of glaucoma | 36877820 | J Glaucoma | 2023 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/36877820 |
| Racial Disparities in Barriers to Care for Patients With Diabetic Retinopathy in a Nationwide Cohort. | Huang BB, Radha Saseendrakumar B, Delavar A, Baxter SL | Translational vision science & technology | 36928128 | Transl Vis Sci Technol | 2023 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/36928128 |
| Novel Association between Opioid Use and Increased Risk of Retinal Vein Occlusion Using the National Institutes of Health All of Us Research Program. | McDermott JJ 4th, Lee TC, Chan AX, Ye GY, Shahrvini B, Saseendrakumar BR, Ferreyra H, Nudleman E, Baxter SL | Ophthalmology science | 35721456 | Ophthalmol Sci | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35721456 |
| Associations of smoking and alcohol consumption with the development of open angle glaucoma: a retrospective cohort study. | Mahmoudinezhad G, Nishida T, Weinreb RN, Baxter SL, Chang AC, Nikkhoy N, Walker E, Liebmann JM, Girkin CA, Moghimi S | BMJ open | 37793935 | BMJ Open | 2023 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/37793935 |
| Associations Between Physical Activity and Glaucoma: Analysis of the National Institutes of Health All of Us Research Program. | Akarapimand P, Hallaj S, Weinreb RN, Baxter SL | Journal of glaucoma | 41370653 | J Glaucoma | 2026 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/41370653 |
| Evaluating the neuroprotective impact of senolytic drugs on human vision. | El-Nimri NW, Moore SM, Zangwill LM, Proudfoot JA, Weinreb RN, Skowronska-Krawczyk D, Baxter SL | Scientific reports | 33303874 | Sci Rep | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/33303874 |
| Long-Term Systemic Use of Calcium Channel Blockers and Incidence of Primary Open-Angle Glaucoma. | Tavakoli K, Sidhu S, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 38901799 | Ophthalmol Glaucoma | 2024 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/38901799 |
| Variations in Electronic Health Record-Based Definitions of Diabetic Retinopathy Cohorts: A Literature Review and Quantitative Analysis. | Chen JS, Copado IA, Vallejos C, Kalaw FGP, Soe P, Cai CX, Toy BC, Borkar D, Sun CQ, Shantha JG, Baxter SL | Ophthalmology science | 38560278 | Ophthalmol Sci | 2024 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/38560278 |
| Evaluation of bias and gender/racial concordance based on sentiment analysis of narrative evaluations of clinical clerkships using natural language processing. | Bhanvadia S, Radha Saseendrakumar B, Guo J, Spadafore M, Daniel M, Lander L, Baxter SL | BMC medical education | 38491461 | BMC Med Educ | 2024 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/38491461 |
| Implementation Mapping of the Collaborative University of California Teleophthalmology Initiative (CUTI): A Qualitative Study Using the Exploration, Preparation, Implementation, and Sustainment (EPIS) Framework. | Radgoudarzi N, Gregg C, Quackenbush Q, Yiu G, Freeby M, Su G, Baxter S, Thorne C, Willard-Grace R | Cureus | 39119397 | Cureus | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39119397 |
| RETINAL STRUCTURAL CHANGES AFTER CESSATION OF PENTOSAN POLYSULFATE SODIUM. | Kalaw FGP, Most J, Kako RN, Sharma P, Arias JD, Chen JS, Lin AC, Walker E, Bartsch DG, Baxter SL, Ferreyra H, Freeman WR, Borooah S | Retina (Philadelphia, Pa.) | 39174300 | Retina | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39174300 |
| Retinal tissue and microvasculature loss in COVID-19 infection. | Kalaw FGP, Warter A, Cavichini M, Knight D, Li A, Deussen D, Galang C, Heinke A, Mendoza V, Borooah S, Baxter SL, Bartsch DU, Cheng L, Freeman WR | Scientific reports | 36991025 | Sci Rep | 2023 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/36991025 |
| Cross-instrument optical coherence tomography-angiography (OCTA)-based prediction of age-related macular degeneration (AMD) disease activity using artificial intelligence. | Heinke A, Zhang H, Broniarek K, Michalska-Małecka K, Elsner W, Galang CMB, Deussen DN, Warter A, Kalaw F, Nagel I, Agnihotri A, Mehta NN, Klaas JE, Schmelter V, Kozak I, Baxter SL, Bartsch DU, Cheng L, An C, Nguyen T, Freeman WR | Scientific reports | 39511248 | Sci Rep | 2024 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/39511248 |
| Gaps in standards for integrating artificial intelligence technologies into ophthalmic practice. | Baxter SL, Lee AY | Current opinion in ophthalmology | 34231531 | Curr Opin Ophthalmol | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34231531 |
| Review of glaucoma medication adherence monitoring in the digital health era. | Erras A, Shahrvini B, Weinreb RN, Baxter SL | The British journal of ophthalmology | 33858837 | Br J Ophthalmol | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33858837 |
| Association of Electronic Health Record Inbasket Message Characteristics With Physician Burnout. | Baxter SL, Saseendrakumar BR, Cheung M, Savides TJ, Longhurst CA, Sinsky CA, Millen M, Tai-Seale M | JAMA network open | 36449288 | JAMA Netw Open | 2022 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/36449288 |
| Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. | Kalaw FGP, Tavakoli K, Baxter SL | Ophthalmology science | 38025157 | Ophthalmol Sci | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38025157 |
| Medication Affordability and Self-Advocacy Among Racial/Ethnic Minorities in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of general internal medicine | 35641727 | J Gen Intern Med | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35641727 |
| What will the future role for large language models (LLMs) be in managing patients with glaucoma? | Tavakoli K, Hallaj S, Baxter SL | Expert review of ophthalmology | 40800545 | Expert Rev Ophthalmol | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40800545 |
| Mesenteric Ischemia and Bacterial Translocation Precipitate the Intoxication Phase of Yellow Fever. | Thomazella MV, Qiu X, Silveira CGT, Correia CA, Marmorato MP, Sanson E, Norton A, Sharobim M, Ho YL, Dolhnikoff M, Matkovic E, Kallas EG, Duarte-Neto AN, Bailey AL | The Journal of infectious diseases | 40982533 | J Infect Dis | 2026 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/40982533 |
| Hepatopathology of flaviviruses. | Bailey AL, Diamond MS | Journal of hepatology | 35981935 | J Hepatol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35981935 |
| Development of a hydrogen peroxide-inactivated vaccine that protects against viscerotropic yellow fever in a non-human primate model. | Amanna IJ, Thomas A, Engelmann F, Hammarlund E, Raué HP, Bailey AL, Poore EA, Quintel BK, Lewis AD, Axthelm MK, Johnson AL, Colgin LMA, Diamond MS, Messaoudi I, Slifka MK | Cell reports. Medicine | 39019010 | Cell Rep Med | 2024 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/39019010 |
| Effect of Interferon Gamma on Ebola Virus Infection of Primary Kupffer Cells and a Kupffer Cell Line. | Aguilar-Briseño JA, Elliff JM, Patten JJ, Wilson LR, Davey RA, Bailey AL, Maury WJ | Viruses | 37896854 | Viruses | 2023 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/37896854 |
| Two mutations in NS2B are responsible for attenuation of the yellow fever virus (YFV) vaccine strain 17D. | Qiu X, Bailey AL | PLoS pathogens | 40743291 | PLoS Pathog | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40743291 |
| Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome. | Crits-Christoph A, Hallowell HA, Koutouvalis K, Suez J | Gut microbes | 35332832 | Gut Microbes | 2022 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/35332832 |
| Impacts of non-nutritive sweeteners on the human microbiome. | Crakes KR, Questell L, Soni S, Suez J | Immunometabolism (Cobham, Surrey) | 40291991 | Immunometabolism (Cobham) | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/40291991 |
| Interactions of Non-Nutritive Artificial Sweeteners with the Microbiome in Metabolic Syndrome. | Harrington V, Lau L, Crits-Christoph A, Suez J | Immunometabolism | 35528135 | Immunometabolism | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35528135 |
| Epigenetic and proteomic signatures associate with clonal hematopoiesis expansion rate. | Mack TM, Raddatz MA, Pershad Y, Nachun DC, Taylor KD, Guo X, Shuldiner AR, O'Connell JR, Kenny EE, Loos RJF, Redline S, Cade BE, Psaty BM, Bis JC, Brody JA, Silverman EK, Yun JH, Cho MH, DeMeo DL, Levy D, Johnson AD, Mathias RA, Yanek LR, Heckbert SR, Smith NL, Wiggins KL, Raffield LM, Carson AP, Rotter JI, Rich SS, Manichaikul AW, Gu CC, Chen YI, Lee WJ, Shoemaker MB, Roden DM, Kooperberg C, Auer PL, Desai P, Blackwell TW, Smith AV, Reiner AP, Jaiswal S, Weinstock JS, Bick AG | Nature aging | 38834882 | Nat Aging | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38834882 |
| Variance quantitative trait loci reveal gene-gene interactions which alter blood traits. | Pershad Y, Poisner H, Corty RW, Hellwege JN, Bick AG | medRxiv : the preprint server for health sciences | 39371150 | medRxiv | 2024 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/39371150 |
| Salt and CHIP: Tet2-CH Aggravates Salt-Sensitive Hypertension in Mice. | Vlasschaert C, Crowley SD, Bick AG | Circulation research | 39388535 | Circ Res | 2024 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/39388535 |
| Increased CHIP Prevalence Amongst People Living with HIV. | Bick AG, Popadin K, Thorball CW, Uddin MM, Zanni M, Yu B, Cavassini M, Rauch A, Tarr P, Schmid P, Bernasconi E, Günthard HF, Libby P, Boerwinkle E, McLaren PJ, Ballantyne CM, Grinspoon S, Natarajan P, Fellay J | medRxiv : the preprint server for health sciences | 33173934 | medRxiv | 2020 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/33173934 |
| Association of Diet Quality With Prevalence of Clonal Hematopoiesis and Adverse Cardiovascular Events. | Bhattacharya R, Zekavat SM, Uddin MM, Pirruccello J, Niroula A, Gibson C, Griffin GK, Libby P, Ebert BL, Bick A, Natarajan P | JAMA cardiology | 34106216 | JAMA Cardiol | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34106216 |
| Long-term longitudinal analysis of 4,187 participants reveals new insights into determinants of incident clonal hematopoiesis. | Uddin MM, Saadatagah S, Niroula A, Yu B, Hornsby W, Ganesh S, Lannery K, Shuermans A, Honigberg MC, Bick AG, Libby P, Ebert BL, Ballantyne CM, Natarajan P | medRxiv : the preprint server for health sciences | 37732181 | medRxiv | 2023 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/37732181 |
| Driver mutation zygosity is a critical factor in predicting clonal hematopoiesis transformation risk. | Kishtagari A, Khan MAW, Li Y, Vlasschaert C, Marneni N, Silver AJ, von Beck K, Spaulding T, Stockton S, Snider C, Sochacki A, Dorand D, Mack TM, Ferrell PB Jr, Xu Y, Bejan CA, Savona MR, Bick AG | Blood cancer journal | 38225345 | Blood Cancer J | 2024 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/38225345 |
| A practical approach to curate clonal hematopoiesis of indeterminate potential in human genetic data sets. | Vlasschaert C, Mack T, Heimlich JB, Niroula A, Uddin MM, Weinstock J, Sharber B, Silver AJ, Xu Y, Savona M, Gibson C, Lanktree MB, Rauh MJ, Ebert BL, Natarajan P, Jaiswal S, Bick AG | Blood | 36652671 | Blood | 2023 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/36652671 |
| Closing the loop: Teaching single-cell foundation models to learn from perturbations. | Pershad Y, Nandi TN, Van Amburg JC, Parker AC, Ostrowski L, Giannini HK, Ong D, Heimlich JB, Obeng EA, Ericson K, Agarwal A, Madduri RK, Bick AG | bioRxiv : the preprint server for biology | 40672312 | bioRxiv | 2025 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/40672312 |
| VEXAS-Defining UBA1 Somatic Variants in 245,368 Diverse Individuals in the NIH All Of Us Cohort. | Corty RW, Brogan J, Byram K, Springer J, Grayson PC, Bick AG | Arthritis & rheumatology (Hoboken, N.J.) | 38225170 | Arthritis Rheumatol | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38225170 |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJ, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun J, DeMeo D, Levy D, Johnson A, Mathias R, Taub M, Arnett D, North K, Raffield LM, Carson A, Doyle MF, Rich SS, Rotter JI, Guo X, Cox N, Roden DM, Franceschini N, Desai P, Reiner A, Auer PL, Scheet P, Jaiswal S, Weinstock JS, Bick AG | medRxiv : the preprint server for health sciences | 37905118 | medRxiv | 2023 Oct 21 | https://www.ncbi.nlm.nih.gov/pubmed/37905118 |
| Inherited causes of clonal haematopoiesis in 97,691 whole genomes. | Bick AG, Weinstock JS, Nandakumar SK, Fulco CP, Bao EL, Zekavat SM, Szeto MD, Liao X, Leventhal MJ, Nasser J, Chang K, Laurie C, Burugula BB, Gibson CJ, Lin AE, Taub MA, Aguet F, Ardlie K, Mitchell BD, Barnes KC, Moscati A, Fornage M, Redline S, Psaty BM, Silverman EK, Weiss ST, Palmer ND, Vasan RS, Burchard EG, Kardia SLR, He J, Kaplan RC, Smith NL, Arnett DK, Schwartz DA, Correa A, de Andrade M, Guo X, Konkle BA, Custer B, Peralta JM, Gui H, Meyers DA, McGarvey ST, Chen IY, Shoemaker MB, Peyser PA, Broome JG, Gogarten SM, Wang FF, Wong Q, Montasser ME, Daya M, Kenny EE, North KE, Launer LJ, Cade BE, Bis JC, Cho MH, Lasky-Su J, Bowden DW, Cupples LA, Mak ACY, Becker LC, Smith JA, Kelly TN, Aslibekyan S, Heckbert SR, Tiwari HK, Yang IV, Heit JA, Lubitz SA, Johnsen JM, Curran JE, Wenzel SE, Weeks DE, Rao DC, Darbar D, Moon JY, Tracy RP, Buth EJ, Rafaels N, Loos RJF, Durda P, Liu Y, Hou L, Lee J, Kachroo P, Freedman BI, Levy D, Bielak LF, Hixson JE, Floyd JS, Whitsel EA, Ellinor PT, Irvin MR, Fingerlin TE, Raffield LM, Armasu SM, Wheeler MM, Sabino EC, Blangero J, Williams LK, Levy BD, Sheu WH, Roden DM, Boerwinkle E, Manson JE, Mathias RA, Desai P, Taylor KD, Johnson AD, NHLBI Trans-Omics for Precision Medicine Consortium, Auer PL, Kooperberg C, Laurie CC, Blackwell TW, Smith AV, Zhao H, Lange E, Lange L, Rich SS, Rotter JI, Wilson JG, Scheet P, Kitzman JO, Lander ES, Engreitz JM, Ebert BL, Reiner AP, Jaiswal S, Abecasis G, Sankaran VG, Kathiresan S, Natarajan P | Nature | 33057201 | Nature | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33057201 |
| A clinical algorithm to identify people with the glucose-6-phosphate dehydrogenase p.Val68Met variant at risk for diabetes undertreatment. | Pershad Y, Breeyear JH, Corty RW, Mosley JD, VA Million Veteran Program, Phillips LS, Giri A, Roden DM, Edwards TL, Bick AG | Genetics in medicine open | 41362833 | Genet Med Open | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41362833 |
| Aberrant activation of TCL1A promotes stem cell expansion in clonal haematopoiesis. | Weinstock JS, Gopakumar J, Burugula BB, Uddin MM, Jahn N, Belk JA, Bouzid H, Daniel B, Miao Z, Ly N, Mack TM, Luna SE, Prothro KP, Mitchell SR, Laurie CA, Broome JG, Taylor KD, Guo X, Sinner MF, von Falkenhausen AS, Kääb S, Shuldiner AR, O'Connell JR, Lewis JP, Boerwinkle E, Barnes KC, Chami N, Kenny EE, Loos RJF, Fornage M, Hou L, Lloyd-Jones DM, Redline S, Cade BE, Psaty BM, Bis JC, Brody JA, Silverman EK, Yun JH, Qiao D, Palmer ND, Freedman BI, Bowden DW, Cho MH, DeMeo DL, Vasan RS, Yanek LR, Becker LC, Kardia SLR, Peyser PA, He J, Rienstra M, Van der Harst P, Kaplan R, Heckbert SR, Smith NL, Wiggins KL, Arnett DK, Irvin MR, Tiwari H, Cutler MJ, Knight S, Muhlestein JB, Correa A, Raffield LM, Gao Y, de Andrade M, Rotter JI, Rich SS, Tracy RP, Konkle BA, Johnsen JM, Wheeler MM, Smith JG, Melander O, Nilsson PM, Custer BS, Duggirala R, Curran JE, Blangero J, McGarvey S, Williams LK, Xiao S, Yang M, Gu CC, Chen YI, Lee WJ, Marcus GM, Kane JP, Pullinger CR, Shoemaker MB, Darbar D, Roden DM, Albert C, Kooperberg C, Zhou Y, Manson JE, Desai P, Johnson AD, Mathias RA, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Blackwell TW, Abecasis GR, Smith AV, Kang HM, Satpathy AT, Natarajan P, Kitzman JO, Whitsel EA, Reiner AP, Bick AG, Jaiswal S | Nature | 37046083 | Nature | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37046083 |
| Clonal hematopoiesis of indeterminate potential, DNA methylation, and risk for coronary artery disease. | Uddin MDM, Nguyen NQH, Yu B, Brody JA, Pampana A, Nakao T, Fornage M, Bressler J, Sotoodehnia N, Weinstock JS, Honigberg MC, Nachun D, Bhattacharya R, Griffin GK, Chander V, Gibbs RA, Rotter JI, Liu C, Baccarelli AA, Chasman DI, Whitsel EA, Kiel DP, Murabito JM, Boerwinkle E, Ebert BL, Jaiswal S, Floyd JS, Bick AG, Ballantyne CM, Psaty BM, Natarajan P, Conneely KN | Nature communications | 36097025 | Nat Commun | 2022 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/36097025 |
| Proteomic profiling platforms head to head: Leveraging genetics and clinical traits to compare aptamer- and antibody-based methods. | Katz DH, Robbins JM, Deng S, Tahir UA, Bick AG, Pampana A, Yu Z, Ngo D, Benson MD, Chen ZZ, Cruz DE, Shen D, Gao Y, Bouchard C, Sarzynski MA, Correa A, Natarajan P, Wilson JG, Gerszten RE | Science advances | 35984888 | Sci Adv | 2022 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/35984888 |
| Clonal Hematopoiesis of Indeterminate Potential and Kidney Function Decline in the General Population. | Kestenbaum B, Bick AG, Vlasschaert C, Rauh MJ, Lanktree MB, Franceschini N, Shoemaker MB, Harris RC Jr, Psaty BM, Köttgen A, Natarajan P, Robinson-Cohen C | American journal of kidney diseases : the official journal of the National Kidney Foundation | 36241009 | Am J Kidney Dis | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36241009 |
| Germline genetics, disease, and exposure to medication influence longitudinal dynamics of clonal hematopoiesis. | Mack T, Pershad Y, Vlasschaert C, Bejan CA, Heimlich JB, Li Y, Mickels NA, Van Amburg JC, Ulloa J, Silver AJ, Luo LY, Jones A, Ferrell PB, Kishtagari A, Xu Y, Savona MR, Bick AG | Haematologica | 39540221 | Haematologica | 2025 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/39540221 |
| Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Health. | Raddatz MA, Pershad Y, Parker AC, Bick AG | Cardiology clinics | 39551555 | Cardiol Clin | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39551555 |
| Cost-effective solutions for high-throughput enzymatic DNA methylation sequencing. | Longtin A, Watowich MM, Sadoughi B, Petersen RM, Brosnan SF, Buetow K, Cai Q, Cayo Biobank Research Unit, Gurven MD, Higham JP, Highland HM, Huang YT, Kaplan H, Kraft TS, Lim YAL, Long J, Melin AD, Montague MJ, Roberson J, Ng KS, Platt ML, Schneider-Crease IA, Stieglitz J, Trumble BC, Venkataraman VV, Wallace IJ, Wu J, Snyder-Mackler N, Jones A, Bick AG, Lea AJ | PLoS genetics | 40402999 | PLoS Genet | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/40402999 |
| Clonal Hematopoiesis of Indeterminate Potential: an Expanding Genetic Cause of Cardiovascular Disease. | Bhattacharya R, Bick AG | Current atherosclerosis reports | 34468876 | Curr Atheroscler Rep | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34468876 |
| Hematopoietic mosaic chromosomal alterations increase the risk for diverse types of infection. | Zekavat SM, Lin SH, Bick AG, Liu A, Paruchuri K, Wang C, Uddin MM, Ye Y, Yu Z, Liu X, Kamatani Y, Bhattacharya R, Pirruccello JP, Pampana A, Loh PR, Kohli P, McCarroll SA, Kiryluk K, Neale B, Ionita-Laza I, Engels EA, Brown DW, Smoller JW, Green R, Karlson EW, Lebo M, Ellinor PT, Weiss ST, Daly MJ, Biobank Japan Project, FinnGen Consortium, Terao C, Zhao H, Ebert BL, Reilly MP, Ganna A, Machiela MJ, Genovese G, Natarajan P | Nature medicine | 34099924 | Nat Med | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34099924 |
| Patient-specific comorbidities as prognostic variables for survival in myelofibrosis. | Sochacki AL, Bejan CA, Zhao S, Patel A, Kishtagari A, Spaulding TP, Silver AJ, Stockton SS, Pugh K, Dorand RD, Bhatta M, Strayer N, Zhang S, Snider CA, Stricker T, Nazha A, Bick AG, Xu Y, Savona MR | Blood advances | 35420683 | Blood Adv | 2023 Mar 14 | https://www.ncbi.nlm.nih.gov/pubmed/35420683 |
| Genetic modification of inflammation- and clonal hematopoiesis-associated cardiovascular risk. | Yu Z, Fidler TP, Ruan Y, Vlasschaert C, Nakao T, Uddin MM, Mack T, Niroula A, Heimlich JB, Zekavat SM, Gibson CJ, Griffin GK, Wang Y, Peloso GM, Heard-Costa N, Levy D, Vasan RS, Aguet F, Ardlie KG, Taylor KD, Rich SS, Rotter JI, Libby P, Jaiswal S, Ebert BL, Bick AG, Tall AR, Natarajan P | The Journal of clinical investigation | 37498674 | J Clin Invest | 2023 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/37498674 |
| Human plasma proteomic profile of clonal hematopoiesis. | Yu Z, Vromman A, Nguyen NQH, Schuermans A, Li L, Rentz T, Nakao T, Vellarikkal SK, Uddin MM, Niroula A, Griffin G, Honigberg MC, Lin AE, Gibson CJ, Katz DH, Tahir UA, Fang S, Dron JS, Pan M, Haidermota S, Ganesh S, Antoine T, Weinstock J, Austin TR, Vasan RS, Peloso GM, Hornsby W, Ganz P, Manson JE, Haring B, Kooperberg C, Reiner AP, Bis JC, Psaty BM, Min YI, Correa A, Lange LA, Post WS, Rotter JI, Rich SS, Wilson JG, Ebert BL, Yu B, Ballantyne CM, Coresh J, Sankaran VG, Bick AG, Jaiswal S, Gerszten RE, NHLBI Trans-Omics for Precision Medicine, Libby P, Gupta RM, Natarajan P | Nature communications | 41309676 | Nat Commun | 2025 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/41309676 |
| Clonal hematopoiesis activates procalcific pathways in macrophages and promotes aortic valve stenosis. | Abplanalp WT, Raddatz MA, Schuhmacher B, Mas-Peiro S, Zuriaga MA, Matesanz N, Fuster JJ, Pershad Y, Vlasschaert C, Silver AJ, Farber-Eger E, Xu Y, Wells QS, Shahidi D, Fatima S, Yang X, Boruah AA, Ware A, Merten M, von Scheidt M, John D, Shumliakivska M, Muhly-Reinholz M, Vasa-Nicotera M, Guenter S, Savona MR, Lindman BR, Dimmeler S, Bick AG, Zeiher AM | The Journal of clinical investigation | 41252200 | J Clin Invest | 2026 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/41252200 |
| Association of Clonal Hematopoiesis With Incident, Late-Onset, Seropositive Rheumatoid Arthritis. | Zhao K, Pershad Y, Heimlich JB, Ormseth M, Stein CM, Sharber B, Vlasschaert C, Bick AG, Corty RW | Arthritis & rheumatology (Hoboken, N.J.) | 41847932 | Arthritis Rheumatol | 2026 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/41847932 |
| Clonal Hematopoiesis and Risk of Stroke: Evidence From Over 800 000 Individuals Across 3 Cohorts. | Zhao K, Pershad Y, Xue L, Vlasschaert C, Corty RW, Heimlich JB, Kooperberg C, Reiner AP, Bick AG | Stroke | 41948817 | Stroke | 2026 Jun | https://www.ncbi.nlm.nih.gov/pubmed/41948817 |
| Clonal Hematopoiesis of Indeterminate Potential Predicts Adverse Outcomes in Patients With Atherosclerotic Cardiovascular Disease. | Gumuser ED, Schuermans A, Cho SMJ, Sporn ZA, Uddin MM, Paruchuri K, Nakao T, Yu Z, Haidermota S, Hornsby W, Weeks LD, Niroula A, Jaiswal S, Libby P, Ebert BL, Bick AG, Natarajan P, Honigberg MC | Journal of the American College of Cardiology | 37197843 | J Am Coll Cardiol | 2023 May 23 | https://www.ncbi.nlm.nih.gov/pubmed/37197843 |
| Clonal hematopoiesis is associated with protection from Alzheimer's disease. | Bouzid H, Belk JA, Jan M, Qi Y, Sarnowski C, Wirth S, Ma L, Chrostek MR, Ahmad H, Nachun D, Yao W, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Beiser A, Bick AG, Bis JC, Fornage M, Longstreth WT Jr, Lopez OL, Natarajan P, Psaty BM, Satizabal CL, Weinstock J, Larson EB, Crane PK, Keene CD, Seshadri S, Satpathy AT, Montine TJ, Jaiswal S | Nature medicine | 37322115 | Nat Med | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37322115 |
| Association of Clonal Hematopoiesis of Indeterminate Potential with Incident Heart Failure with Preserved Ejection Fraction. | Reiner AP, Roberts MB, Honigberg MC, Kooperberg C, Desai P, Bick AG, Natarajan P, Manson JE, Whitsel EA, Eaton CB | medRxiv : the preprint server for health sciences | 37333361 | medRxiv | 2023 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/37333361 |
| TP53-mediated clonal hematopoiesis confers increased risk for incident atherosclerotic disease. | Zekavat SM, Viana-Huete V, Matesanz N, Jorshery SD, Zuriaga MA, Uddin MM, Trinder M, Paruchuri K, Zorita V, Ferrer-Pérez A, Amorós-Pérez M, Kunderfranco P, Carriero R, Greco CM, Aroca-Crevillen A, Hidalgo A, Damrauer SM, Ballantyne CM, Niroula A, Gibson CJ, Pirruccello J, Griffin G, Ebert BL, Libby P, Fuster V, Zhao H, Ghassemi M, Natarajan P, Bick AG, Fuster JJ, Klarin D | Nature cardiovascular research | 36949957 | Nat Cardiovasc Res | 2023 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/36949957 |
| Germline genetic variation impacts clonal hematopoiesis landscape and progression to malignancy. | Liu J, Tran D, Xue L, Wiley BJ, Vlasschaert C, Watson CJ, MacGregor HAJ, Zong X, Chan ICC, Das I, Uddin MM, Niroula A, Griffin G, Ebert BL, Mack T, Pershad Y, Sharber B, Berger M, Zehir A, Ptashkin R, Levine RL, Papaemmanuil E, Joseph V, Gao T, Kemel Y, Mandelker D, Stopsack KH, Pharoah PDP, Mukherjee S, Ding L, Cao Y, Walter MJ, Blundell JR, Chatterjee N, Offit K, Godley LA, Link DC, Stadler ZK, Bick AG, Natarajan P, Bolton KL | Nature genetics | 40664769 | Nat Genet | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40664769 |
| Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. | Bick AG, Popadin K, Thorball CW, Uddin MM, Zanni MV, Yu B, Cavassini M, Rauch A, Tarr P, Schmid P, Bernasconi E, Günthard HF, Libby P, Boerwinkle E, McLaren PJ, Ballantyne CM, Grinspoon S, Natarajan P, Fellay J, Swiss HIV Cohort Study | Scientific reports | 35022435 | Sci Rep | 2022 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/35022435 |
| Clonal hematopoiesis in sickle cell disease. | Liggett LA, Cato LD, Weinstock JS, Zhang Y, Nouraie SM, Gladwin MT, Garrett ME, Ashley-Koch A, Telen MJ, Custer B, Kelly S, Dinardo CL, Sabino EC, Loureiro P, Carneiro-Proietti AB, Maximo C, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Reiner AP, Abecasis GR, Williams DA, Natarajan P, Bick AG, Sankaran VG | The Journal of clinical investigation | 34990411 | J Clin Invest | 2022 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/34990411 |
| Somatic Mutations in Cardiovascular Disease. | Heimlich JB, Bick AG | Circulation research | 34995138 | Circ Res | 2022 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/34995138 |
| Clonal Hematopoiesis Is Associated With Higher Risk of Stroke. | Bhattacharya R, Zekavat SM, Haessler J, Fornage M, Raffield L, Uddin MM, Bick AG, Niroula A, Yu B, Gibson C, Griffin G, Morrison AC, Psaty BM, Longstreth WT, Bis JC, Rich SS, Rotter JI, Tracy RP, Correa A, Seshadri S, Johnson A, Collins JM, Hayden KM, Madsen TE, Ballantyne CM, Jaiswal S, Ebert BL, Kooperberg C, Manson JE, Whitsel EA, NHLBI Trans-Omics for Precision Medicine Program, Natarajan P, Reiner AP | Stroke | 34743536 | Stroke | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34743536 |
| Germline risk of clonal haematopoiesis. | Silver AJ, Bick AG, Savona MR | Nature reviews. Genetics | 33986496 | Nat Rev Genet | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33986496 |
| Age at Menopause, Leukocyte Telomere Length, and Coronary Artery Disease in Postmenopausal Women. | Schuermans A, Nakao T, Uddin MM, Hornsby W, Ganesh S, Shadyab AH, Liu S, Haring B, Shufelt CL, Taub MA, Mathias RA, Kooperberg C, Reiner AP, Bick AG, Manson JE, Natarajan P, Honigberg MC | Circulation research | 37489536 | Circ Res | 2023 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/37489536 |
| Increased Risk of Thoracic Aortic Aneurysms With JAK2 V617F. | Nakao T, Yu Z, Vlasschaert C, Uddin MM, Lindsay ME, Ellinor PT, Ebert BL, Bick AG, Pirruccello JP, Natarajan P | Journal of the American College of Cardiology | 37225367 | J Am Coll Cardiol | 2023 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/37225367 |
| Genetic drivers and clinical consequences of mosaic chromosomal alterations in 1 million individuals. | Zhao K, Pershad Y, Poisner HM, Ma X, Quade K, Vlasschaert C, Mack T, Khankari NK, von Beck K, Brogan J, Kishtagari A, Corty RW, Li Y, Xu Y, Reiner AP, Scheet P, Auer PL, Bick AG | medRxiv : the preprint server for health sciences | 40093208 | medRxiv | 2025 Mar 6 | https://www.ncbi.nlm.nih.gov/pubmed/40093208 |
| Genetic determinants and phenotypic consequences of blood T-cell proportions in 207,000 diverse individuals. | Poisner H, Faucon A, Cox N, Bick AG | Nature communications | 39112476 | Nat Commun | 2024 Aug 7 | https://www.ncbi.nlm.nih.gov/pubmed/39112476 |
| Genetic Interleukin-6 Receptor Variant Is Not Associated With Rejection and Mortality After Heart Transplantation. | Amancherla K, Schlendorf KH, Vlasschaert C, Lowery BD, Wells QS, See SB, Zorn E, Colombo PC, Reilly MP, Lindenfeld J, Uriel N, Shah RV, Freedman JE, Moslehi J, Bick AG, Clerkin K | Journal of cardiac failure | 38367904 | J Card Fail | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38367904 |
| Cost-Effective and Scalable Clonal Hematopoiesis Assay Provides Insight into Clonal Dynamics. | Mack T, Vlasschaert C, von Beck K, Silver AJ, Heimlich JB, Poisner H, Condon HR, Ulloa J, Sochacki AL, Spaulding TP, Kishtagari A, Bejan CA, Xu Y, Savona MR, Jones A, Bick AG | The Journal of molecular diagnostics : JMD | 38588769 | J Mol Diagn | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38588769 |
| Multiomic profiling of human clonal hematopoiesis reveals genotype and cell-specific inflammatory pathway activation. | Heimlich JB, Bhat P, Parker AC, Jenkins MT, Vlasschaert C, Ulloa J, Van Amburg JC, Potts CR, Olson S, Silver AJ, Ahmad A, Sharber B, Brown D, Hu N, van Galen P, Savona MR, Bick AG, Ferrell PB | Blood advances | 38507736 | Blood Adv | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/38507736 |
| Solid Organ Transplant Recipients Exhibit More TET2-Mutant Clonal Hematopoiesis of Indeterminate Potential Not Driven by Increased Transplantation Risk. | Silver AJ, Vlasschaert C, Mack T, Sharber B, Xu Y, Bick AG, Pinson CW, Savona MR | Clinical cancer research : an official journal of the American Association for Cancer Research | 38551504 | Clin Cancer Res | 2024 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/38551504 |
| Interleukin-17 receptor-A signalling: atheroprotective role in JAK2 clonal haematopoiesis. | Zhao K, Hsu CC, Pershad Y, Vlasschaert C, Corty RW, Wang N, Heimlich JB, Tall AR, Bick AG | European heart journal | 40986427 | Eur Heart J | 2025 Dec 22 | https://www.ncbi.nlm.nih.gov/pubmed/40986427 |
| Human level information extraction from clinical reports with finetuned language models. | Liu L, Lian L, Hao Y, Pace A, Kim E, Homsi N, Pershad Y, Lai L, Gracie T, Kishtagari A, Carroll PR, Bick AG, Odisho AY, Chung M, Yala A | Scientific reports | 41286063 | Sci Rep | 2025 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/41286063 |
| Clonal hematopoiesis and vascular disease. | Amancherla K, Wells JA 4th, Bick AG | Seminars in immunopathology | 35122117 | Semin Immunopathol | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35122117 |
| Whole Genome Sequence Analysis of the Plasma Proteome in Black Adults Provides Novel Insights Into Cardiovascular Disease. | Katz DH, Tahir UA, Bick AG, Pampana A, Ngo D, Benson MD, Yu Z, Robbins JM, Chen ZZ, Cruz DE, Deng S, Farrell L, Sinha S, Schmaier AA, Shen D, Gao Y, Hall ME, Correa A, Tracy RP, Durda P, Taylor KD, Liu Y, Johnson WC, Guo X, Yao J, Ida Chen YD, Manichaikul AW, Jain D, Bouchard C, Sarzynski MA, Rich SS, Rotter JI, Wang TJ, Wilson JG, Natarajan P, Gerszten RE, National Heart, Lung, and Blood Institute TOPMed (Trans-Omics for Precision Medicine) Consortium† | Circulation | 34814699 | Circulation | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34814699 |
| Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells. | Bao EL, Nandakumar SK, Liao X, Bick AG, Karjalainen J, Tabaka M, Gan OI, Havulinna AS, Kiiskinen TTJ, Lareau CA, de Lapuente Portilla AL, Li B, Emdin C, Codd V, Nelson CP, Walker CJ, Churchhouse C, de la Chapelle A, Klein DE, Nilsson B, Wilson PWF, Cho K, Pyarajan S, Gaziano JM, Samani NJ, FinnGen, 23andMe Research Team, Regev A, Palotie A, Neale BM, Dick JE, Natarajan P, O'Donnell CJ, Daly MJ, Milyavsky M, Kathiresan S, Sankaran VG | Nature | 33057200 | Nature | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33057200 |
| Hematopoietic mosaic chromosomal alterations and risk for infection among 767,891 individuals without blood cancer. | Zekavat SM, Lin SH, Bick AG, Liu A, Paruchuri K, Uddin MM, Ye Y, Yu Z, Liu X, Kamatani Y, Pirruccello JP, Pampana A, Loh PR, Kohli P, McCarroll SA, Neale B, Engels EA, Brown DW, Smoller JW, Green R, Karlson EW, Lebo M, Ellinor PT, Weiss ST, Daly MJ, Biobank Japan Project, FinnGen Consortium, Terao C, Zhao H, Ebert BL, COVID-19 Host Genetics Initiative, Ganna A, Machiela MJ, Genovese G, Natarajan P | medRxiv : the preprint server for health sciences | 33236019 | medRxiv | 2020 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/33236019 |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJF, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun JH, DeMeo D, Levy D, Johnson AD, Mathias RA, Taub MA, Arnett D, North KE, Raffield LM, Carson AP, Doyle MF, Rich SS, Rotter JI, Guo X, Cox NJ, Roden DM, Franceschini N, Desai P, Reiner AP, Auer PL, Scheet PA, Jaiswal S, Weinstock JS, Bick AG | Nature communications | 38714703 | Nat Commun | 2024 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/38714703 |
| JAK2-mutant clonal hematopoiesis is associated with venous thromboembolism. | Zon RL, Sekar A, Clapham K, Oren O, Niroula A, Bick AG, Gibson CJ, Griffin G, Uddin MM, Neuberg D, Natarajan P, Ebert BL | Blood | 39102652 | Blood | 2024 Nov 14 | https://www.ncbi.nlm.nih.gov/pubmed/39102652 |
| Long-term longitudinal analysis of 4,187 participants reveals insights into determinants of clonal hematopoiesis. | Uddin MM, Saadatagah S, Niroula A, Yu B, Hornsby WE, Ganesh S, Lannery K, Schuermans A, Honigberg MC, Bick AG, Libby P, Ebert BL, Ballantyne CM, Natarajan P | Nature communications | 39251642 | Nat Commun | 2024 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/39251642 |
| The genetic determinants of recurrent somatic mutations in 43,693 blood genomes. | Weinstock JS, Laurie CA, Broome JG, Taylor KD, Guo X, Shuldiner AR, O'Connell JR, Lewis JP, Boerwinkle E, Barnes KC, Chami N, Kenny EE, Loos RJF, Fornage M, Redline S, Cade BE, Gilliland FD, Chen Z, Gauderman WJ, Kumar R, Grammer L, Schleimer RP, Psaty BM, Bis JC, Brody JA, Silverman EK, Yun JH, Qiao D, Weiss ST, Lasky-Su J, DeMeo DL, Palmer ND, Freedman BI, Bowden DW, Cho MH, Vasan RS, Johnson AD, Yanek LR, Becker LC, Kardia S, He J, Kaplan R, Heckbert SR, Smith NL, Wiggins KL, Arnett DK, Irvin MR, Tiwari H, Correa A, Raffield LM, Gao Y, de Andrade M, Rotter JI, Rich SS, Manichaikul AW, Konkle BA, Johnsen JM, Wheeler MM, Custer BS, Duggirala R, Curran JE, Blangero J, Gui H, Xiao S, Williams LK, Meyers DA, Li X, Ortega V, McGarvey S, Gu CC, Chen YI, Lee WJ, Shoemaker MB, Darbar D, Roden D, Albert C, Kooperberg C, Desai P, Blackwell TW, Abecasis GR, Smith AV, Kang HM, Mathias R, Natarajan P, Jaiswal S, Reiner AP, Bick AG, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium | Science advances | 37126548 | Sci Adv | 2023 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/37126548 |
| Clonal hematopoiesis of indeterminate potential and outcomes after heart transplantation: A multicenter study. | Amancherla K, Schlendorf KH, Vlasschaert C, Lowery BD, Wells QS, See SB, Zorn E, Colombo PC, Reilly MP, Lindenfeld J, Uriel N, Freedman JE, Shah RV, Moslehi J, Bick AG, Clerkin K | American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons | 37156299 | Am J Transplant | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37156299 |
| Interleukin-6 Receptor Polymorphism Attenuates Clonal Hematopoiesis-Mediated Coronary Artery Disease Risk Among 451 180 Individuals in the UK Biobank. | Vlasschaert C, Heimlich JB, Rauh MJ, Natarajan P, Bick AG | Circulation | 36689568 | Circulation | 2023 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/36689568 |
| Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood. | Schuermans A, Nakao T, Ruan Y, Koyama S, Yu Z, Uddin MM, Haidermota S, Hornsby W, Lewandowski AJ, Bick AG, Niroula A, Jaiswal S, Ebert BL, Natarajan P, Honigberg MC | Journal of the American Heart Association | 37345823 | J Am Heart Assoc | 2023 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/37345823 |
| Inherited resilience to clonal hematopoiesis by modifying stem cell RNA regulation. | Agarwal G, Antoszewski M, Xie X, Pershad Y, Arora UP, Poon CL, Lyu P, Lee AJ, Guo CJ, Ye T, Norford LB, Neehus AL, Volpe LD, Wahlster L, Ranasinghe D, Ho TC, Barlowe TS, Chow A, Schurer A, Taggart J, Durham BH, Abdel-Wahab O, McGraw KL, Allan JM, Soldatov R, Bick AG, Kharas MG, Sankaran VG | bioRxiv : the preprint server for biology | 40196615 | bioRxiv | 2025 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/40196615 |
| Human Plasma Proteomic Profile of Clonal Hematopoiesis. | Yu Z, Vromman A, Nguyen NQH, Schuermans A, Rentz T, Vellarikkal SK, Uddin MM, Niroula A, Griffin G, Honigberg MC, Lin AE, Gibson CJ, Katz DH, Tahir U, Fang S, Haidermota S, Ganesh S, Antoine T, Weinstock J, Austin TR, Ramachandran VS, Peloso GM, Hornsby W, Ganz P, Manson JE, Haring B, Kooperberg CL, Reiner AP, Bis JC, Psaty BM, Min YI, Correa A, Lange LA, Post WS, Rotter JI, Rich SS, Wilson JG, Ebert BL, Yu B, Ballantyne CM, Coresh J, Sankaran VG, Bick AG, Jaiswal S, Gerszten RE, NHLBI Trans-Omics for Precision Medicine, Libby P, Gupta RM, Natarajan P | bioRxiv : the preprint server for biology | 39554199 | bioRxiv | 2024 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/39554199 |
| Healthy Lifestyle and Clonal Hematopoiesis of Indeterminate Potential: Results From the Women's Health Initiative. | Haring B, Reiner AP, Liu J, Tobias DK, Whitsel E, Berger JS, Desai P, Wassertheil-Smoller S, LaMonte MJ, Hayden KM, Bick AG, Natarajan P, Weinstock JS, Nguyen PK, Stefanick M, Simon MS, Eaton CB, Kooperberg C, Manson JE | Journal of the American Heart Association | 33619969 | J Am Heart Assoc | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33619969 |
| Clonal hematopoiesis associated with epigenetic aging and clinical outcomes. | Nachun D, Lu AT, Bick AG, Natarajan P, Weinstock J, Szeto MD, Kathiresan S, Abecasis G, Taylor KD, Guo X, Tracy R, Durda P, Liu Y, Johnson C, Rich SS, Van Den Berg D, Laurie C, Blackwell T, Papanicolaou GJ, Correa A, Raffield LM, Johnson AD, Murabito J, Manson JE, Desai P, Kooperberg C, Assimes TL, Levy D, Rotter JI, Reiner AP, Whitsel EA, Wilson JG, Horvath S, Jaiswal S, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium | Aging cell | 34050697 | Aging Cell | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34050697 |
| Clonal Somatic Mutations in Chronic Lung Diseases Are Associated with Reduced Lung Function. | Yun JH, Khan MAW, Ghosh A, Hobbs BD, Castaldi PJ, Hersh CP, Miller PG, Cool CD, Sciurba F, Barwick L, Limper AH, Flaherty K, Criner GJ, Brown K, Wise R, Martinez F, Silverman EK, DeMeo D, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Cho MH, Bick AG | American journal of respiratory and critical care medicine | 37788444 | Am J Respir Crit Care Med | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37788444 |
| Demonstrating paths for unlocking the value of cloud genomics through cross cohort analysis. | Deflaux N, Selvaraj MS, Condon HR, Mayo K, Haidermota S, Basford MA, Lunt C, Philippakis AA, Roden DM, Denny JC, Musick A, Collins R, Allen N, Effingham M, Glazer D, Natarajan P, Bick AG | Nature communications | 37669985 | Nat Commun | 2023 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/37669985 |
| Mosaic chromosomal alterations in blood across ancestries using whole-genome sequencing. | Jakubek YA, Zhou Y, Stilp A, Bacon J, Wong JW, Ozcan Z, Arnett D, Barnes K, Bis JC, Boerwinkle E, Brody JA, Carson AP, Chasman DI, Chen J, Cho M, Conomos MP, Cox N, Doyle MF, Fornage M, Guo X, Kardia SLR, Lewis JP, Loos RJF, Ma X, Machiela MJ, Mack TM, Mathias RA, Mitchell BD, Mychaleckyj JC, North K, Pankratz N, Peyser PA, Preuss MH, Psaty B, Raffield LM, Vasan RS, Redline S, Rich SS, Rotter JI, Silverman EK, Smith JA, Smith AP, Taub M, Taylor KD, Yun J, Li Y, Desai P, Bick AG, Reiner AP, Scheet P, Auer PL | Nature genetics | 37904051 | Nat Genet | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37904051 |
| Clonal Hematopoiesis Risk Score and All-Cause and Cardiovascular Mortality in Older Adults. | Saadatagah S, Uddin MM, Weeks LD, Niroula A, Ru M, Takahashi K, Gondek L, Yu B, Bick AG, Ebert BL, Platz EA, Natarajan P, Ballantyne CM | JAMA network open | 38231513 | JAMA Netw Open | 2024 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/38231513 |
| Inherited resilience to clonal hematopoiesis by modifying stem cell RNA regulation. | Agarwal G, Antoszewski M, Xie X, Pershad Y, Arora UP, Poon CL, Lyu P, Lee AJ, Guo CJ, Ye T, Norford LB, Neehus AL, Della Volpe L, Wahlster L, Ranasinghe D, Ho TC, Barlowe TS, Chow A, Schurer A, Taggart J, Durham BH, Abdel-Wahab O, McGraw KL, Allan JM, Soldatov R, Bick AG, Kharas MG, Sankaran VG | Science (New York, N.Y.) | 41477881 | Science | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41477881 |
| Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 39027313 | Res Comput Mol Biol | 2024 Apr-May | https://www.ncbi.nlm.nih.gov/pubmed/39027313 |
| Scalable and Privacy-Preserving Federated Principal Component Analysis. | Froelicher D, Cho H, Edupalli M, Sousa JS, Bossuat JP, Pyrgelis A, Troncoso-Pastoriza JR, Berger B, Hubaux JP | Proceedings. IEEE Symposium on Security and Privacy | 38665901 | Proc IEEE Symp Secur Priv | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/38665901 |
| Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing. | Smajlović H, Shajii A, Berger B, Cho H, Numanagić I | Genome biology | 36631897 | Genome Biol | 2023 Jan 11 | https://www.ncbi.nlm.nih.gov/pubmed/36631897 |
| Secure discovery of genetic relatives across large-scale and distributed genomic data sets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Genome research | 39111815 | Genome Res | 2024 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/39111815 |
| Shechi: A Secure Distributed Computation Compiler Based on Multiparty Homomorphic Encryption. | Smajlović H, Froelicher D, Shajii A, Berger B, Cho H, Numanagić I | Proceedings. UNIX Security Symposium | 41685295 | Proc (UNIX Secur Symp) | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/41685295 |
| Mechanisms for Hiding Sensitive Genotypes with Information-Theoretic Privacy. | Ye F, Cho H, Rouayheb SE | IEEE transactions on information theory | 37283781 | IEEE Trans Inf Theory | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37283781 |
| Privacy-preserving genotype imputation in a trusted execution environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Cell systems | 34450045 | Cell Syst | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34450045 |
| Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption. | Froelicher D, Troncoso-Pastoriza JR, Raisaro JL, Cuendet MA, Sousa JS, Cho H, Berger B, Fellay J, Hubaux JP | Nature communications | 34635645 | Nat Commun | 2021 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/34635645 |
| Reconstruction of private genomes through reference-based genotype imputation. | Mosca MJ, Cho H | Genome biology | 38053191 | Genome Biol | 2023 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/38053191 |
| Secure and federated genome-wide association studies for biobank-scale datasets. | Cho H, Froelicher D, Chen J, Edupalli M, Pyrgelis A, Troncoso-Pastoriza JR, Hubaux JP, Berger B | Nature genetics | 39994472 | Nat Genet | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39994472 |
| Privacy-Enhancing Technologies in Biomedical Data Science. | Cho H, Froelicher D, Dokmai N, Nandi A, Sadhuka S, Hong MM, Berger B | Annual review of biomedical data science | 39178425 | Annu Rev Biomed Data Sci | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/39178425 |
| k-SALSA: k-anonymous synthetic averaging of retinal images via local style alignment. | Jeon M, Park H, Kim HJ, Morley M, Cho H | Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision | 37525827 | Comput Vis ECCV | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37525827 |
| Secure phasing of private genomes in a trusted execution environment with TX-Phase. | Dokmai N, Zhu K, Sahinalp SC, Cho H | Genome research | 41224532 | Genome Res | 2025 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/41224532 |
| Privacy-Preserving Genotype Imputation in a Trusted Execution Environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 34859247 | Res Comput Mol Biol | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34859247 |
| sfkit: a web-based toolkit for secure and federated genomic analysis. | Mendelsohn S, Froelicher D, Loginov D, Bernick D, Berger B, Cho H | Nucleic acids research | 37246709 | Nucleic Acids Res | 2023 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/37246709 |
| Assessing transcriptomic reidentification risks using discriminative sequence models. | Sadhuka S, Fridman D, Berger B, Cho H | Genome research | 37541758 | Genome Res | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37541758 |
| Wrist EMG Improves Gesture Classification for Stroke Patients. | Olsen CD, Hamrick WC, Lewis SR, Iverson MM, George JA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 37941185 | IEEE Int Conf Rehabil Robot | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37941185 |
| A Bionic Hand for Semi-Autonomous Fragile Object Manipulation via Proximity and Pressure Sensors. | Hansen TC, Trout MA, Segil JL, Warren DJ, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892591 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34892591 |
| Cold Tissue Temperature Decreases Electrocutaneous Sensory Perception and Discriminability. | Travis JW, Olsen CD, Reinsch AM, Witt MM, Citterman AR, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41337022 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41337022 |
| Functional and Structural Neural Plasticity Following sEMG Control of a Virtual Prosthetic Hand in an Individual with Bilateral Upper-Limb Congenital Amputation. | Feldman DA, Cavinatto DF, Olsen CD, Caden Hamrick W, Paskett MD, Davis TS, Baschuk C, Duncan CC, King JB, Clark GA, George JA, Brinton MR | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336048 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336048 |
| USER-SPECIFIC MIRROR TRAINING CAN IMPROVE MYOELECTRIC PROSTHESIS CONTROL. | Tully TN, Thomson CJ, Clark GA, George JA | Myoelectric Controls and Upper Limb Prosthetics Symposium | 41958758 | Myoelectr Control Upper Limb Prosthet Symp | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/41958758 |
| A Multi-User Transradial Functional-Test Socket for Validation of New Myoelectric Prosthetic Control Strategies. | Hansen TC, Citterman AR, Stone ES, Tully TN, Baschuk CM, Duncan CC, George JA | Frontiers in neurorobotics | 35783364 | Front Neurorobot | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35783364 |
| Enhancing neuroprosthesis calibration: the advantage of integrating prior training over exclusive use of new data. | Thomson CJ, Tully TN, Stone ES, Morrell CB, Scheme EJ, Warren DJ, Hutchinson DT, Clark GA, George JA | Journal of neural engineering | 39569866 | J Neural Eng | 2024 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/39569866 |
| A Recurrent Neural Network Provides Stable Across-Day Prosthetic Control for a Human Amputee with Implanted Intramuscular Electromyographic Recording Leads. | Thomson CJ, Clark GA, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892525 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34892525 |
| Electromyographically controlled prosthetic wrist improves dexterity and reduces compensatory movements without added cognitive load. | Olsen CD, Olsen NR, Stone ES, Tully TN, Paskett MD, Teramoto M, Clark GA, George JA | Scientific reports | 39370497 | Sci Rep | 2024 Oct 6 | https://www.ncbi.nlm.nih.gov/pubmed/39370497 |
| Reinforcement Learning Agent Trained as FES Controller in Modified Xia-Law Simulation Robustly Controls Grip Force. | Trout MA, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41335691 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41335691 |
| Effect of Wrist Posture on the Intensity, Size, and Location of Hand Sensations Evoked by Transcutaneous Nerve Stimulation at the Wrist. | Hansen KK, Tully TN, Citterman AR, Harrison AT, Trout MA, Thomson CJ, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336276 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336276 |
| Predicting Motor Intent from Residual Neck Muscle Activity in Individuals with Neck Weakness from ALS. | Buczak MK, Brignone J, Cole KM, Caden Hamrick W, Bromberg MB, Zhang H, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336973 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336973 |
| Multi-Channel Functional Electrical Stimulation to Improve Specificity of Hand Extension. | Stanley CT, Trout MA, Saad KM, Mino FR, Nelson AE, Tully TN, Davis TS, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41337013 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41337013 |
| PROPORTIONAL ELECTROMYOGRAPHIC CONTROL OF A BIONIC ARM IN A PARTICIPANT WITH CHRONIC HEMIPARESIS, MUSCLE SPASTICITY, AND IMPAIRED RANGE OF MOTION: A CASE STUDY. | Thomson CJ, George JA | Myoelectric Controls and Upper Limb Prosthetics Symposium | 41958756 | Myoelectr Control Upper Limb Prosthet Symp | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/41958756 |
| MATLAB Tool Allowing Wireless Control of Arduino Robot for Early Introduction of Robotics into Curriculum. | Olsen CD, Verkler A, Drew DS, George JA | Annual Conference & Exposition : final program and proceedings. American Society for Engineering Education | 41458562 | Annu Conf Expo (Am Soc Eng Educ) | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/41458562 |
| Correcting Temporal Inaccuracies in Labeled Training Data for Electromyographic Control Algorithms. | Wang AT, Olsen CD, Hamrick WC, George JA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 37941234 | IEEE Int Conf Rehabil Robot | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37941234 |
| Delayed Muscle Activity in Stroke Survivors with Upper-Limb Hemiparesis. | Lopez DR, Thomson CJ, Mino FR, Edgely SR, Maitre PP, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 38083023 | Annu Int Conf IEEE Eng Med Biol Soc | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38083023 |
| An Extensible Platform for Measurement and Modification of Muscle Engagement During Upper-Limb Robot-Facilitated Rehabilitation. | Anand A, Berghoff CA, Wynn CJ, Falconer EC, Parra G, Jenkens J, Thomson CJ, Hamrick WC, George JA, Hallock LA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 40644275 | IEEE Int Conf Rehabil Robot | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/40644275 |
| Simultaneous and Proportional Myoelectric Control of Multiple Degrees of Freedom in Individuals With Chronic Hemiparesis. | Thomson CJ, Caden Hamrick W, Travis JW, Adkins MD, Maitre PP, Edgely SR, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 40811192 | IEEE Trans Neural Syst Rehabil Eng | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40811192 |
| Peptidomimetic Oligomers Targeting Membrane Phosphatidylserine Exhibit Broad Antiviral Activity. | Tate PM, Mastrodomenico V, Cunha C, McClure J, Barron AE, Diamond G, Mounce BC, Kirshenbaum K | ACS infectious diseases | 37530426 | ACS Infect Dis | 2023 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/37530426 |
| Proportional myoelectric control of a virtual bionic arm in participants with hemiparesis, muscle spasticity, and impaired range of motion. | Thomson CJ, Mino FR, Lopez DR, Maitre PP, Edgley SR, George JA | Journal of neuroengineering and rehabilitation | 39707399 | J Neuroeng Rehabil | 2024 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/39707399 |
| Validity and Impact of Methods for Collecting Training Data for Myoelectric Prosthetic Control Algorithms. | Tully TN, Thomson CJ, Clark GA, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 38739519 | IEEE Trans Neural Syst Rehabil Eng | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38739519 |
| Automated Quantifiable Assessments of Sensorimotor Function Using an Instrumented Fragile Object. | Adkins MD, Buczak MK, Olsen CD, Iversen MM, George JA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 37941235 | IEEE Int Conf Rehabil Robot | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37941235 |
| Impaired Discrimination of Electrocutaneous Stimulation in the Paretic Hand of Stroke Survivors. | Citterman AR, Stewart AE, Urban RJ, Trout MA, Maitre PP, Edgley SR, Richards LG, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 38082723 | Annu Int Conf IEEE Eng Med Biol Soc | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38082723 |
| Training Movement Velocity Significantly Affects the Performance of Myoelectric Control. | Tully TN, Nelson AE, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 40956733 | IEEE Trans Neural Syst Rehabil Eng | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40956733 |
| Voice-Controlled Dual-Site Functional Electrical Stimulation Enables Tenodesis Grasping. | Trout MA, Aagard AA, Stanley CT, Saad KM, Rosenbluth JP, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336219 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336219 |
| Improved Prediction of Activities of Daily Living from Wrist Electromyography Using Intermediate Gesture Classification. | Hamrick WC, King TJ, Olsen CD, Nelson AE, Mauchley M, Curd BC, Cliatt Brown C, Frost NA, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41337392 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41337392 |
| A portable, programmable, multichannel stimulator with high compliance voltage for noninvasive neural stimulation of motor and sensory nerves in humans. | Trout MA, Harrison AT, Brinton MR, George JA | Scientific reports | 36859464 | Sci Rep | 2023 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/36859464 |
| Intuitive, Myoelectric Control of Adaptive Sports Equipment for Individuals with Tetraplegia. | Buczak MK, Zollinger JM, Alsaleem A, Imburgia R, Rosenbluth J, George JA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 37941260 | IEEE Int Conf Rehabil Robot | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37941260 |
| A Low-Profile High-Density Electromyography Neckband for Recording Neck Muscle Activity. | Cole KM, Buczak MK, Zhang H, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336129 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336129 |
| Centimeter Differences in Wrist Electrode Placement Significantly Impact Myoelectric Performance. | Olsen CD, Lewis SR, Gubler JD, Coleman MK, Davis TS, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41337421 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41337421 |
| Shared human-machine control of an intelligent bionic hand improves grasping and decreases cognitive burden for transradial amputees. | Trout MA, Mino FR, Olsen CD, Hansen TC, Teramoto M, Warren DJ, Segil JL, George JA | Nature communications | 41365851 | Nat Commun | 2025 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/41365851 |
| Quantifying the Cognitive Demand of Controlling a Prosthesis with a Secondary Detection Response Task. | Cheng M, Olsen CD, Teramoto M, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41335829 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41335829 |
| An Intuitive, Bidirectional, and Adaptive Functional Electrical Stimulation System for Hand Rehabilitation. | Trout MA, Stanley CT, Saad KM, Harrison AT, Liu M, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 41801791 | IEEE Trans Neural Syst Rehabil Eng | 2026 | https://www.ncbi.nlm.nih.gov/pubmed/41801791 |
| AN INEXPENSIVE AND ADAPTABLE PROSTHETIC WRIST IMPROVES DEXTERITY AND REDUCES COMPENSATORY MOVEMENTS. | Olsen CD, Tully TN, Stone ES, Olsen NR, Clark GA, George JA | Myoelectric Controls and Upper Limb Prosthetics Symposium | 41958754 | Myoelectr Control Upper Limb Prosthet Symp | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/41958754 |
| DISENTANGLING SENSORY AND MOTOR DEFICITS OF FINE HAND FUNCTION USING AN ELECTRONIC GRIP GAUGE (EGG) TO SIMULATE TRANSFERRING FRAGILE OBJECTS. | Buczak M, Baum B, Olsen C, George J | Myoelectric Controls and Upper Limb Prosthetics Symposium | 41958755 | Myoelectr Control Upper Limb Prosthet Symp | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/41958755 |
| UNIVERSAL, LOW-COST TRANSRADIAL CHECK SOCKET FOR RAPIDLY VALIDATING MYOELECTRIC CONTROL. | Citterman AR, Hansen TC, Stone ES, Tully TN, Baschuk CM, Duncan CC, George JA | Myoelectric Controls and Upper Limb Prosthetics Symposium | 41958757 | Myoelectr Control Upper Limb Prosthet Symp | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/41958757 |
| SHARED-CONTROL DECREASES THE PHYSICAL AND COGNITIVE DEMANDS OF MAINTAINING A SECURE GRIP. | Trout MA, Hansen TC, Olsen CD, Warren DJ, Segil JL, George JA | Myoelectric Controls and Upper Limb Prosthetics Symposium | 41958759 | Myoelectr Control Upper Limb Prosthet Symp | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/41958759 |
| A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. | Dorone Y, Boeynaems S, Flores E, Jin B, Hateley S, Bossi F, Lazarus E, Pennington JG, Michiels E, De Decker M, Vints K, Baatsen P, Bassel GW, Otegui MS, Holehouse AS, Exposito-Alonso M, Sukenik S, Gitler AD, Rhee SY | Cell | 34233164 | Cell | 2021 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/34233164 |
| grenepipe: a flexible, scalable and reproducible pipeline to automate variant calling from sequence reads. | Czech L, Exposito-Alonso M | Bioinformatics (Oxford, England) | 36053180 | Bioinformatics | 2022 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/36053180 |
| Rapid adaptation and extinction across climates in synchronized outdoor evolution experiments of Arabidopsis thaliana. | Wu X, Bellagio T, Peng Y, Czech L, Lin M, Lang P, Epstein R, Abdelaziz M, Alexander J, Caton-Darby M, Alonso-Blanco C, Andersen HL, Berbel M, Bergelson J, Burghardt L, Delker C, Dimitrakopoulos PG, Donohue K, Durka W, Escribano-Avila G, Franks SJ, Fritschi FB, Galanidis A, Garcia-Fernández A, García-Muñoz A, Hamann E, Herber M, Hutt A, Iriondo JM, Juenger TE, Keller S, Koehl K, Korte A, Korte P, Kuschera A, Lara-Romero C, Leventhal L, Maag D, Marcer A, March-Salas M, de Meaux J, Méndez-Vigo B, Morente-López J, Morton TC, Münzbergova Z, Muola A, Pärtel M, Picó FX, Quarles-Chidyagwai B, Quint M, Reichelt N, Rudak A, Schmitt J, Seifan M, Snoek BL, Stam R, Stinchcombe JR, Stift M, Taylor MA, Tiffin P, Till-Bottraud I, Traveset A, Valay JG, van Zanten M, Vandvik V, Violle C, Wódkiewicz M, Weigel D, Bossdorf O, Colautti R, Vasseur F, Scheepens JF, Exposito-Alonso M | bioRxiv : the preprint server for biology | 40501611 | bioRxiv | 2025 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/40501611 |
| Global coral genomic vulnerability explains recent reef losses. | Selmoni O, Cleves PA, Exposito-Alonso M | bioRxiv : the preprint server for biology | 40832279 | bioRxiv | 2025 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/40832279 |
| Genetic diversity loss in the Anthropocene. | Exposito-Alonso M, Booker TR, Czech L, Gillespie L, Hateley S, Kyriazis CC, Lang PLM, Leventhal L, Nogues-Bravo D, Pagowski V, Ruffley M, Spence JP, Toro Arana SE, Weiß CL, Zess E | Science (New York, N.Y.) | 36137047 | Science | 2022 Sep 23 | https://www.ncbi.nlm.nih.gov/pubmed/36137047 |
| Large future genetic diversity losses are predicted from conservation indicators even with habitat protection. | Mualim KS, Spence JP, Weiß C, Selmoni O, Lin M, Exposito-Alonso M | Proceedings of the National Academy of Sciences of the United States of America | 41886371 | Proc Natl Acad Sci U S A | 2026 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/41886371 |
| Planting Genomes in the Wild: Arabidopsis from Genetics History to the Ecology and Evolutionary Genomics Era. | Leventhal L, Ruffley M, Exposito-Alonso M | Annual review of plant biology | 39971350 | Annu Rev Plant Biol | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/39971350 |
| Mutation bias reflects natural selection in Arabidopsis thaliana. | Monroe JG, Srikant T, Carbonell-Bejerano P, Becker C, Lensink M, Exposito-Alonso M, Klein M, Hildebrandt J, Neumann M, Kliebenstein D, Weng ML, Imbert E, Ågren J, Rutter MT, Fenster CB, Weigel D | Nature | 35022609 | Nature | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35022609 |
| Uncovering natural variation in root system architecture and growth dynamics using a robotics-assisted phenomics platform. | LaRue T, Lindner H, Srinivas A, Exposito-Alonso M, Lobet G, Dinneny JR | eLife | 36047575 | Elife | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/36047575 |
| grenedalf: population genetic statistics for the next generation of pool sequencing. | Czech L, Spence JP, Expósito-Alonso M | Bioinformatics (Oxford, England) | 39185959 | Bioinformatics | 2024 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/39185959 |
| Global coral genomic vulnerability explains recent reef losses. | Selmoni O, Cleves PA, Exposito-Alonso M | Nature communications | 41419485 | Nat Commun | 2025 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/41419485 |
| Ecological trade-offs drive phenotypic and genetic differentiation of Arabidopsis thaliana in Europe. | Bastias CC, Estarague A, Vile D, Gaignon E, Lee CR, Exposito-Alonso M, Violle C, Vasseur F | Nature communications | 38890286 | Nat Commun | 2024 Jun 18 | https://www.ncbi.nlm.nih.gov/pubmed/38890286 |
| Century-long timelines of herbarium genomes predict plant stomatal response to climate change. | Lang PLM, Erberich JM, Lopez L, Weiß CL, Amador G, Fung HF, Latorre SM, Lasky JR, Burbano HA, Expósito-Alonso M, Bergmann DC | Nature ecology & evolution | 39117952 | Nat Ecol Evol | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39117952 |
| Deep learning models map rapid plant species changes from citizen science and remote sensing data. | Gillespie LE, Ruffley M, Exposito-Alonso M | Proceedings of the National Academy of Sciences of the United States of America | 39236239 | Proc Natl Acad Sci U S A | 2024 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/39236239 |
| Large future genetic diversity losses are predicted even with habitat protection. | Mualim KS, Spence JP, Weiß C, Selmoni O, Lin M, Exposito-Alonso M | bioRxiv : the preprint server for biology | 39484505 | bioRxiv | 2025 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/39484505 |
| Understanding local plant extinctions before it is too late: bridging evolutionary genomics with global ecology. | Exposito-Alonso M | The New phytologist | 36604850 | New Phytol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36604850 |
| Cold Atmospheric Plasma Induces Growth Arrest and Apoptosis in Neurofibromatosis Type 1-Associated Peripheral Nerve Sheath Tumor Cells. | Na B, Haist B, Shah SR, Sabiston G, Jonas SJ, Vitte J, Wirz RE, Giovannini M | Biomedicines | 39335500 | Biomedicines | 2024 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/39335500 |
| Cold atmospheric plasma for addressing the COVID-19 pandemic. | Chen Z, Bai F, Jonas SJ, Wirz RE | Plasma processes and polymers (Print) | 35574246 | Plasma Process Polym | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35574246 |
| Surface Lattice Plasmon Resonances by Direct In Situ Substrate Growth of Gold Nanoparticles in Ordered Arrays. | Vinnacombe-Willson GA, Conti Y, Jonas SJ, Weiss PS, Mihi A, Scarabelli L | Advanced materials (Deerfield Beach, Fla.) | 35903851 | Adv Mater | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35903851 |
| Lipid-Bicelle-Coated Microfluidics for Intracellular Delivery with Reduced Fouling. | Belling JN, Heidenreich LK, Park JH, Kawakami LM, Takahashi J, Frost IM, Gong Y, Young TD, Jackman JA, Jonas SJ, Cho NJ, Weiss PS | ACS applied materials & interfaces | 32940030 | ACS Appl Mater Interfaces | 2020 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/32940030 |
| Photothermal Intracellular Delivery Using Gold Nanodisk Arrays. | Zhao C, Man T, Xu X, Yang Q, Liu W, Jonas SJ, Teitell MA, Chiou PY, Weiss PS | ACS materials letters | 34708213 | ACS Mater Lett | 2020 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34708213 |
| Supramolecular nanosubstrate-mediated delivery system enables CRISPR-Cas9 knockin of hemoglobin beta gene for hemoglobinopathies. | Yang P, Chou SJ, Li J, Hui W, Liu W, Sun N, Zhang RY, Zhu Y, Tsai ML, Lai HI, Smalley M, Zhang X, Chen J, Romero Z, Liu D, Ke Z, Zou C, Lee CF, Jonas SJ, Ban Q, Weiss PS, Kohn DB, Chen K, Chiou SH, Tseng HR | Science advances | 33097539 | Sci Adv | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33097539 |
| Membrane repair following filtroporation-induced cell permeabilization. | Frost IM, Sims R, Yakimenko A, Ma R, Floridia M, Foley RA, Duggan EC, Cai KY, Jorgensen K, Skuratovsky E, Weiss PS, Jonas SJ | iScience | 41509911 | iScience | 2026 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/41509911 |
| Dual Supramolecular Nanoparticle Vectors Enable CRISPR/Cas9-Mediated Knockin of Retinoschisin 1 Gene-A Potential Nonviral Therapeutic Solution for X-Linked Juvenile Retinoschisis. | Chou SJ, Yang P, Ban Q, Yang YP, Wang ML, Chien CS, Chen SJ, Sun N, Zhu Y, Liu H, Hui W, Lin TC, Wang F, Zhang RY, Nguyen VQ, Liu W, Chen M, Jonas SJ, Weiss PS, Tseng HR, Chiou SH | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 32440478 | Adv Sci (Weinh) | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32440478 |
| Supramolecular Nanosubstrate-Mediated Delivery for CRISPR/Cas9 Gene Disruption and Deletion. | Ban Q, Yang P, Chou SJ, Qiao L, Xia H, Xue J, Wang F, Xu X, Sun N, Zhang RY, Zhang C, Lee A, Liu W, Lin TY, Ko YL, Antovski P, Zhang X, Chiou SH, Lee CF, Hui W, Liu D, Jonas SJ, Weiss PS, Tseng HR | Small (Weinheim an der Bergstrasse, Germany) | 34105245 | Small | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34105245 |
| Mixed-dimensional MXene-hydrogel heterostructures for electronic skin sensors with ultrabroad working range. | Cai Y, Shen J, Yang CW, Wan Y, Tang HL, Aljarb AA, Chen C, Fu JH, Wei X, Huang KW, Han Y, Jonas SJ, Dong X, Tung V | Science advances | 33246950 | Sci Adv | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33246950 |
| In Situ Shape Control of Thermoplasmonic Gold Nanostars on Oxide Substrates for Hyperthermia-Mediated Cell Detachment. | Vinnacombe-Willson GA, Chiang N, Scarabelli L, Hu Y, Heidenreich LK, Li X, Gong Y, Inouye DT, Fisher TS, Weiss PS, Jonas SJ | ACS central science | 33274287 | ACS Cent Sci | 2020 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/33274287 |
| Delivering the CRISPR/Cas9 system for engineering gene therapies: Recent cargo and delivery approaches for clinical translation. | Foley RA, Sims RA, Duggan EC, Olmedo JK, Ma R, Jonas SJ | Frontiers in bioengineering and biotechnology | 36225598 | Front Bioeng Biotechnol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36225598 |
| Exploring the Bottom-Up Growth of Anisotropic Gold Nanoparticles from Substrate-Bound Seeds in Microfluidic Reactors. | Vinnacombe-Willson GA, Lee JK, Chiang N, Scarabelli L, Yue S, Foley R, Frost I, Weiss PS, Jonas SJ | ACS applied nano materials | 37152920 | ACS Appl Nano Mater | 2023 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/37152920 |
| Fluorinated Silane-Modified Filtroporation Devices Enable Gene Knockout in Human Hematopoietic Stem and Progenitor Cells. | Frost IM, Mendoza AM, Chiou TT, Kim P, Aizenberg J, Kohn DB, De Oliveira SN, Weiss PS, Jonas SJ | ACS applied materials & interfaces | 37616579 | ACS Appl Mater Interfaces | 2023 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/37616579 |
| Lipid Bicelle Micropatterning Using Chemical Lift-Off Lithography. | Belling JN, Cheung KM, Jackman JA, Sut TN, Allen M, Park JH, Jonas SJ, Cho NJ, Weiss PS | ACS applied materials & interfaces | 32092250 | ACS Appl Mater Interfaces | 2020 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/32092250 |
| Acoustofluidic sonoporation for gene delivery to human hematopoietic stem and progenitor cells. | Belling JN, Heidenreich LK, Tian Z, Mendoza AM, Chiou TT, Gong Y, Chen NY, Young TD, Wattanatorn N, Park JH, Scarabelli L, Chiang N, Takahashi J, Young SG, Stieg AZ, De Oliveira S, Huang TJ, Weiss PS, Jonas SJ | Proceedings of the National Academy of Sciences of the United States of America | 32358194 | Proc Natl Acad Sci U S A | 2020 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/32358194 |
| Acoustofluidics-Based Intracellular Nanoparticle Delivery. | Li Z, Tian Z, Belling JN, Rich JT, Zhu H, Ma Z, Bachman H, Shen L, Liang Y, Qi X, Heidenreich LK, Gong Y, Yang S, Zhang W, Zhang P, Fu Y, Ying Y, Jonas SJ, Li Y, Weiss PS, Huang TJ | Engineering (Beijing, China) | 40330125 | Engineering (Beijing) | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/40330125 |
| Large-Scale Soft-Lithographic Patterning of Plasmonic Nanoparticles. | Chiang N, Scarabelli L, Vinnacombe-Willson GA, Pérez LA, Dore C, Mihi A, Jonas SJ, Weiss PS | ACS materials letters | 34337418 | ACS Mater Lett | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/34337418 |
| Self-Powered Programming of Fibroblasts into Neurons via a Scalable Magnetoelastic Generator Array. | Libanori A, Soto J, Xu J, Song Y, Zarubova J, Tat T, Xiao X, Yue SZ, Jonas SJ, Li S, Chen J | Advanced materials (Deerfield Beach, Fla.) | 36468617 | Adv Mater | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36468617 |
| Tumor Extracellular Vesicle Digital Scoring Assays for Cancer Detection and Monitoring. | Lee J, Zhao C, Yang J, Jonas SJ, Agopian V, You S, Posadas E, Yang JD, Zhu Y, Tseng HR | Precision chemistry | 41312082 | Precis Chem | 2025 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/41312082 |
| Detection of Extracellular Vesicles with Colocalized Surface Markers via a Capture-Release-Capture Strategy for Treatment Monitoring in Ewing Sarcoma. | Ji YR, Ju Y, Kong H, Xu Y, Zhao C, Zhang R, Ma Y, Zheng LL, Shi LR, Wu A, Lin LA, Wu CP, Qian A, Ren E, Zhang C, Vo K, Dry S, Crompton JG, Federman N, Zhu Y, Jonas SJ, Tseng HR, Lu S, Lee J | Advanced healthcare materials | 41725127 | Adv Healthc Mater | 2026 May | https://www.ncbi.nlm.nih.gov/pubmed/41725127 |
| Shared Immunogenic Poly-Epitope Frameshift Mutations in Microsatellite Unstable Tumors. | Roudko V, Bozkus CC, Orfanelli T, McClain CB, Carr C, O'Donnell T, Chakraborty L, Samstein R, Huang KL, Blank SV, Greenbaum B, Bhardwaj N | Cell | 33259803 | Cell | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/33259803 |
| Pathogenic ATM Mutations in Cancer and a Genetic Basis for Radiotherapeutic Efficacy. | Pitter KL, Casey DL, Lu YC, Hannum M, Zhang Z, Song X, Pecorari I, McMillan B, Ma J, Samstein RM, Pei IX, Khan AJ, Braunstein LZ, Morris LGT, Barker CA, Rimner A, Alektiar KM, Romesser PB, Crane CH, Yahalom J, Zelefsky MJ, Scher HI, Bernstein JL, Mandelker DL, Weigelt B, Reis-Filho JS, Lee NY, Powell SN, Chan TA, Riaz N, Setton J | Journal of the National Cancer Institute | 32726432 | J Natl Cancer Inst | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/32726432 |
| Immunology of COVID-19: Current State of the Science. | Vabret N, Britton GJ, Gruber C, Hegde S, Kim J, Kuksin M, Levantovsky R, Malle L, Moreira A, Park MD, Pia L, Risson E, Saffern M, Salomé B, Esai Selvan M, Spindler MP, Tan J, van der Heide V, Gregory JK, Alexandropoulos K, Bhardwaj N, Brown BD, Greenbaum B, Gümüş ZH, Homann D, Horowitz A, Kamphorst AO, Curotto de Lafaille MA, Mehandru S, Merad M, Samstein RM, Sinai Immunology Review Project | Immunity | 32505227 | Immunity | 2020 Jun 16 | https://www.ncbi.nlm.nih.gov/pubmed/32505227 |
| An immunogenetic basis for lung cancer risk. | Krishna C, Tervi A, Saffern M, Wilson EA, Yoo SK, Mars N, Roudko V, Cho BA, Jones SE, Vaninov N, Selvan ME, Gümüş ZH, FinnGen§, Lenz TL, Merad M, Boffetta P, Martínez-Jiménez F, Ollila HM, Samstein RM, Chowell D | Science (New York, N.Y.) | 38386728 | Science | 2024 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/38386728 |
| Improved prediction of immune checkpoint blockade efficacy across multiple cancer types. | Chowell D, Yoo SK, Valero C, Pastore A, Krishna C, Lee M, Hoen D, Shi H, Kelly DW, Patel N, Makarov V, Ma X, Vuong L, Sabio EY, Weiss K, Kuo F, Lenz TL, Samstein RM, Riaz N, Adusumilli PS, Balachandran VP, Plitas G, Ari Hakimi A, Abdel-Wahab O, Shoushtari AN, Postow MA, Motzer RJ, Ladanyi M, Zehir A, Berger MF, Gönen M, Morris LGT, Weinhold N, Chan TA | Nature biotechnology | 34725502 | Nat Biotechnol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34725502 |
| Tumor mutational burden as a predictive biomarker for checkpoint inhibitor immunotherapy. | Lee M, Samstein RM, Valero C, Chan TA, Morris LGT | Human vaccines & immunotherapeutics | 31361563 | Hum Vaccin Immunother | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/31361563 |
| Mutations in BRCA1 and BRCA2 differentially affect the tumor microenvironment and response to checkpoint blockade immunotherapy. | Samstein RM, Krishna C, Ma X, Pei X, Lee KW, Makarov V, Kuo F, Chung J, Srivastava RM, Purohit TA, Hoen DR, Mandal R, Setton J, Wu W, Shah R, Qeriqi B, Chang Q, Kendall S, Braunstein L, Weigelt B, Blecua Carrillo Albornoz P, Morris LGT, Mandelker DL, Reis-Filho JS, de Stanchina E, Powell SN, Chan TA, Riaz N | Nature cancer | 33834176 | Nat Cancer | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33834176 |
| Functional landscapes of POLE and POLD1 mutations in checkpoint blockade-dependent antitumor immunity. | Ma X, Riaz N, Samstein RM, Lee M, Makarov V, Valero C, Chowell D, Kuo F, Hoen D, Fitzgerald CWR, Jiang H, Alektiar J, Alban TJ, Juric I, Parthasarathy PB, Zhao Y, Sabio EY, Verma R, Srivastava RM, Vuong L, Yang W, Zhang X, Wang J, Chu LK, Wang SL, Kelly DW, Pei X, Chen J, Yaeger R, Zamarin D, Zehir A, Gönen M, Morris LGT, Chan TA | Nature genetics | 35817971 | Nat Genet | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35817971 |
| Large area kidney imaging for pre-transplant evaluation using real-time robotic optical coherence tomography. | Ma X, Moradi M, Ma X, Tang Q, Levi M, Chen Y, Zhang HK | Communications engineering | 39223332 | Commun Eng | 2024 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/39223332 |
| Intraoperative Ablation Control Based on Real-Time Necrosis Monitoring Feedback: Numerical Evaluation. | Murakami R, Mori S, Zhang HK | Annals of biomedical engineering | 39133389 | Ann Biomed Eng | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39133389 |
| Autonomous Scanning Target Localization for Robotic Lung Ultrasound Imaging. | Ma X, Zhang Z, Zhang HK | Proceedings of the ... IEEE/RSJ International Conference on Intelligent Robots and Systems. IEEE/RSJ International Conference on Intelligent Robots and Systems | 35965637 | Rep U S | 2021 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/35965637 |
| Cross-Modality Registration using Bone Surface Pointcloud for Robotic Ultrasound-Guided Spine Surgery. | Ma X, Zhang X, Wang Y, Nycz CJ, Sungarian A, Ji S, Huang X, Zhang HK | Journal of medical robotics research | 40687495 | J Med Robot Res | 2025 Mar-Jun | https://www.ncbi.nlm.nih.gov/pubmed/40687495 |
| A-SEE: Active-Sensing End-effector Enabled Probe Self-Normal-Positioning for Robotic Ultrasound Imaging Applications. | Ma X, Kuo WY, Yang K, Rahaman A, Zhang HK | IEEE robotics and automation letters | 37325198 | IEEE Robot Autom Lett | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37325198 |
| Acoustic-resolution photoacoustic microscope based on compact and low-cost delta configuration actuator. | Gao S, Tsumura R, Vang DP, Bisland K, Xu K, Tsunoi Y, Zhang HK | Ultrasonics | 34474357 | Ultrasonics | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34474357 |
| Absolute Quantitative Photoacoustic Imaging for Contrast Agents Concentration Estimation Using a Spectral Decomposition Approach. | Gao S, Serebrennikova L, Murakami R, Boinapally S, Ray S, Pomper MG, Zhang HK | Molecular imaging | 41777598 | Mol Imaging | 2025 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/41777598 |
| Thermal Ablation Therapy Control with Tissue Necrosis-driven Temperature Feedback Enabled by Neural State Space Model with Extended Kalman Filter. | Murakami R, Mori S, Zhang HK | Proceedings of the ... IEEE/RSJ International Conference on Intelligent Robots and Systems. IEEE/RSJ International Conference on Intelligent Robots and Systems | 40487025 | Rep U S | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40487025 |
| Cardiac-gated spectroscopic photoacoustic imaging for ablation-induced necrotic lesion visualization. | Gao S, Ashikaga H, Suzuki M, Mansi T, Kim YH, Ghesu FC, Kang J, Boctor EM, Halperin HR, Zhang HK | Journal of biophotonics | 39075610 | J Biophotonics | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39075610 |
| Beyond synthetic aperture focusing: deconvolution-based elevation resolution enhancement using simulated point spread function for linear array-based three-dimensional photoacoustic imaging. | Tang Y, Lesniak WG, Gao S, Wu Y, Pomper MG, Zhang HK | Biomedical optics express | 38495705 | Biomed Opt Express | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/38495705 |
| In-bore MRI-compatible transrectal ultrasound and photoacoustic imaging. | Murakami R, Wang Y, Lesniak WG, Tsumura R, Tang Y, Gao S, Tsunoi Y, Nycz CJ, Pomper MG, Fischer GS, Zhang HK | Photoacoustics | 41280406 | Photoacoustics | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41280406 |
| Elevational Synthetic Aperture Focusing for Rotated Array-Based Three-Dimensional Ultrasound Imaging. | Murakami R, Wang Y, Tang Y, Tsumura R, Fischer GS, Zhang HK | IEEE access : practical innovations, open solutions | 40260101 | IEEE Access | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40260101 |
| A-SEE2.0: Active-Sensing End-Effector for Robotic Ultrasound Systems with Dense Contact Surface Perception Enabled Probe Orientation Adjustment. | Zhetpissov Y, Ma X, Yang K, Zhang HK | IEEE robotics and automation letters | 40995401 | IEEE Robot Autom Lett | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40995401 |
| Bendable graded index lens-based laser-scanning optical-resolution photoacoustic microendoscopy. | Liu G, Gao S, Luo DD, Roman M, Maloney E, Bhagavatula S, Ahn SW, Tarallo V, Panikkanvalappil SR, Zhang HK, Jonas O | Optics letters | 40751992 | Opt Lett | 2025 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/40751992 |
| An economic photoacoustic imaging platform using automatic laser synchronization and inverse beamforming. | Wu Y, Zhang HK, Kang J, Boctor EM | Ultrasonics | 32105781 | Ultrasonics | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32105781 |
| Ring-arrayed Forward-viewing Ultrasound Imaging System: A Feasibility Study. | Tsumura R, Vang DP, Hata N, Zhang HK | Proceedings of SPIE--the International Society for Optical Engineering | 32782420 | Proc SPIE Int Soc Opt Eng | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32782420 |
| Tele-Operative Low-Cost Robotic Lung Ultrasound Scanning Platform for Triage of COVID-19 Patients. | Tsumura R, Hardin JW, Bimbraw K, Grossestreuer AV, Odusanya OS, Zheng Y, Hill JC, Hoffmann B, Soboyejo W, Zhang HK | IEEE robotics and automation letters | 34532570 | IEEE Robot Autom Lett | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34532570 |
| Anatomical Feature-Based Lung Ultrasound Image Quality Assessment Using Deep Convolutional Neural Network. | Ravishankar SM, Tsumura R, Hardin JW, Hoffmann B, Zhang Z, Zhang HK | IEEE International Ultrasonics Symposium : [proceedings]. IEEE International Ultrasonics Symposium | 35966447 | IEEE Int Ultrason Symp | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35966447 |
| Large Area Kidney Imaging for Pre-transplant Evaluation using Real-Time Robotic Optical Coherence Tomography. | Ma X, Moradi M, Ma X, Tang Q, Levi M, Chen Y, Zhang HK | Research square | 37886456 | Res Sq | 2023 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/37886456 |
| Direct-Necrosis-Monitoring-Based Adaptive Model Predictive Control for Ablation Therapy Including Patient-Specific Residual Heat Management. | Murakami R, Mori S, Zhang HK | Annals of biomedical engineering | 41886163 | Ann Biomed Eng | 2026 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/41886163 |
| Feasibility of Robot-Assisted Ultrasound Imaging with Force Feedback for Assessment of Thyroid Diseases. | Kaminski JT, Rafatzand K, Zhang HK | Proceedings of SPIE--the International Society for Optical Engineering | 32742057 | Proc SPIE Int Soc Opt Eng | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32742057 |
| Enhancing boundary detection of radiofrequency ablation lesions through photoacoustic mapping. | Gao S, Liu H, Post A, Jaworski L, Bernard D, John M, Cosgriff-Hernandez E, Razavi M, Zhang HK | Scientific reports | 39169048 | Sci Rep | 2024 Aug 21 | https://www.ncbi.nlm.nih.gov/pubmed/39169048 |
| Laparoscopic Photoacoustic Imaging System Based on Side-Illumination Diffusing Fibers. | Gao S, Jiang Y, Li M, Wang Y, Shen Y, Flegal MC, Nephew BC, Fischer GS, Liu Y, Fichera L, Zhang HK | IEEE transactions on bio-medical engineering | 37224375 | IEEE Trans Biomed Eng | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37224375 |
| Needle Aligned Ultrasound Image-Guided Access Through Dual-Segment Array. | Rahaman A, Tang Y, Gao S, Ma X, Sorokin I, Zhang HK | IEEE transactions on bio-medical engineering | 37030673 | IEEE Trans Biomed Eng | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37030673 |
| Acoustic reflector-enabled forward-viewing ultrasound image-guided access. | Tang Y, Rahaman A, Gonzalez AB, Abouaf I, Malik A, Sorokin I, Zhang H | Journal of medical imaging (Bellingham, Wash.) | 40213618 | J Med Imaging (Bellingham) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40213618 |
| Deep Loss Convexification for Learning Iterative Models. | Zhang Z, Shao Y, Zhang Y, Lin F, Zhang H, Rundensteiner E | IEEE transactions on pattern analysis and machine intelligence | 40030446 | IEEE Trans Pattern Anal Mach Intell | 2024 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/40030446 |
| Miniaturized side-firing intracardiac photoacoustic imaging catheter for monitoring radiofrequency ablation. | Gao S, Wang Y, Murakami R, Ashikaga H, Kim YH, Mehrmohammadi M, Halperin HR, Zhang HK | Scientific reports | 40394278 | Sci Rep | 2025 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/40394278 |
| Spectroscopic photoacoustic denoising framework using hybrid analytical and data-free learning method. | Lin F, Gao S, Tang Y, Ma X, Murakami R, Zhang Z, Obayemi JD, Soboyejo WO, Zhang HK | Photoacoustics | 40416360 | Photoacoustics | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40416360 |
| Simultaneous Estimation of Hand Configurations and Finger Joint Angles Using Forearm Ultrasound. | Bimbraw K, Nycz CJ, Schueler M, Zhang Z, Zhang HK | IEEE transactions on medical robotics and bionics | 40511365 | IEEE Trans Med Robot Bionics | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40511365 |
| Intraoperative laparoscopic photoacoustic image guidance system in the da Vinci surgical system. | Gao S, Wang Y, Ma X, Zhou H, Jiang Y, Yang K, Lu L, Wang S, Nephew BC, Fichera L, Fischer GS, Zhang HK | Biomedical optics express | 37791285 | Biomed Opt Express | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37791285 |
| Concentric-ring arrays for forward-viewing ultrasound imaging. | Tsumura R, Gao S, Tang Y, Zhang HK | Journal of medical imaging (Bellingham, Wash.) | 36444284 | J Med Imaging (Bellingham) | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36444284 |
| Actuated Reflector-Based 3-D Ultrasound Imaging With Synthetic Aperture Focusing. | Tang Y, Tsumura R, Kaminski JT, Zhang HK | IEEE transactions on ultrasonics, ferroelectrics, and frequency control | 35675232 | IEEE Trans Ultrason Ferroelectr Freq Control | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35675232 |
| Single-strand mismatch and damage patterns revealed by single-molecule DNA sequencing. | Liu MH, Costa B, Choi U, Bandler RC, Lassen E, Grońska-Pęski M, Schwing A, Murphy ZR, Rosenkjær D, Picciotto S, Bianchi V, Stengs L, Edwards M, Loh CA, Truong TK, Brand RE, Pastinen T, Wagner JR, Skytte AB, Tabori U, Shoag JE, Evrony GD | bioRxiv : the preprint server for biology | 36824744 | bioRxiv | 2023 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/36824744 |
| High-fidelity, large-scale targeted profiling of microsatellites. | Loh CA, Shields DA, Schwing A, Evrony GD | Genome research | 39013593 | Genome Res | 2024 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/39013593 |
| Applications of Single-Cell DNA Sequencing. | Evrony GD, Hinch AG, Luo C | Annual review of genomics and human genetics | 33722077 | Annu Rev Genomics Hum Genet | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/33722077 |
| DNA mismatch and damage patterns revealed by single-molecule sequencing. | Liu MH, Costa BM, Bianchini EC, Choi U, Bandler RC, Lassen E, Grońska-Pęski M, Schwing A, Murphy ZR, Rosenkjær D, Picciotto S, Bianchi V, Stengs L, Edwards M, Nunes NM, Loh CA, Truong TK, Brand RE, Pastinen T, Wagner JR, Skytte AB, Tabori U, Shoag JE, Evrony GD | Nature | 38867045 | Nature | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38867045 |
| Single duplex DNA sequencing with CODEC detects mutations with high sensitivity. | Bae JH, Liu R, Roberts E, Nguyen E, Tabrizi S, Rhoades J, Blewett T, Xiong K, Gydush G, Shea D, An Z, Patel S, Cheng J, Sridhar S, Liu MH, Lassen E, Skytte AB, Grońska-Pęski M, Shoag JE, Evrony GD, Parsons HA, Mayer EL, Makrigiorgos GM, Golub TR, Adalsteinsson VA | Nature genetics | 37106072 | Nat Genet | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37106072 |
| Serial enrichment of heteroduplex DNA using a MutS-magnetic bead system. | Murphy ZR, Shields DA, Evrony GD | Biotechnology journal | 36317440 | Biotechnol J | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36317440 |
| Histamine Excretion by the Common Bed Bug (Hemiptera: Cimicidae). | Gaire S, Principato S, Schal C, DeVries ZC | Journal of medical entomology | 36086827 | J Med Entomol | 2022 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/36086827 |
| Identification of the pan-allergen tropomyosin from the common bed bug (Cimex lectularius). | Gordon JM, DeVries ZC | Scientific reports | 38538827 | Sci Rep | 2024 Mar 27 | https://www.ncbi.nlm.nih.gov/pubmed/38538827 |
| Histamine excretion in common indoor and hematophagous arthropods. | Principato S, Romero A, Lee CY, Campbell K, Choe DH, Schal C, DeVries Z | Journal of medical entomology | 37619246 | J Med Entomol | 2023 Nov 14 | https://www.ncbi.nlm.nih.gov/pubmed/37619246 |
| The Role of Antennae in Heat Detection and Feeding Behavior in the Bed Bug (Hemiptera: Cimicidae). | Gaire S, Schal C, Mick R, DeVries Z | Journal of economic entomology | 33128451 | J Econ Entomol | 2020 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/33128451 |
| Human skin triglycerides prevent bed bug (Cimex lectularius L.) arrestment. | Gaire S, DeVries ZC, Mick R, Santangelo RG, Bottillo G, Camera E, Schal C | Scientific reports | 34880281 | Sci Rep | 2021 Dec 8 | https://www.ncbi.nlm.nih.gov/pubmed/34880281 |
| Effects of aging and cleaning on bed bug (Hemiptera: Cimicidae)-derived histamine. | Principato S, DeVries ZC | Journal of medical entomology | 40221908 | J Med Entomol | 2025 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/40221908 |
| Spatial distribution of histamine in bed bug-infested homes. | Gordon JM, Santangelo RG, González-Morales MA, Menechella M, Schal C, DeVries ZC | The Science of the total environment | 37001661 | Sci Total Environ | 2023 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/37001661 |
| GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control. | Hickey KL, Dickson K, Cogan JZ, Replogle JM, Schoof M, D'Orazio KN, Sinha NK, Hussmann JA, Jost M, Frost A, Green R, Weissman JS, Kostova KK | Molecular cell | 32726578 | Mol Cell | 2020 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/32726578 |
| ZNF574 is a quality control factor for defective ribosome biogenesis intermediates. | Akers JF, LaScola M, Bothe A, Suh H, Jung C, Stolp ZD, Ghosh T, Yan LL, Wang Y, Macurak M, Devan A, McKinney MC, Grismer TS, Reyes AV, Ross EJ, Hu T, Xu SL, Ban N, Kostova KK | Molecular cell | 40328246 | Mol Cell | 2025 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/40328246 |
| Antibody testing will enhance the power and accuracy of COVID-19-prevention trials. | Lipsitch M, Kahn R, Mina MJ | Nature medicine | 32341581 | Nat Med | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32341581 |
| Waning immunity and re-emergence of measles and mumps in the vaccine era. | Yang L, Grenfell BT, Mina MJ | Current opinion in virology | 32634672 | Curr Opin Virol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32634672 |
| Estimating internationally imported cases during the early COVID-19 pandemic. | Menkir TF, Chin T, Hay JA, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina MJ, Lipsitch M, Niehus R | Nature communications | 33436574 | Nat Commun | 2021 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/33436574 |
| Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings. | Cleary B, Hay JA, Blumenstiel B, Harden M, Cipicchio M, Bezney J, Simonton B, Hong D, Senghore M, Sesay AK, Gabriel S, Regev A, Mina MJ | Science translational medicine | 33619080 | Sci Transl Med | 2021 Apr 14 | https://www.ncbi.nlm.nih.gov/pubmed/33619080 |
| Mathematical modeling to inform vaccination strategies and testing approaches for COVID-19 in nursing homes. | Kahn R, Holmdahl I, Reddy S, Jernigan J, Mina MJ, Slayton RB | medRxiv : the preprint server for health sciences | 33688668 | medRxiv | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/33688668 |
| To Interpret the SARS-CoV-2 Test, Consider the Cycle Threshold Value. | Tom MR, Mina MJ | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 32435816 | Clin Infect Dis | 2020 Nov 19 | https://www.ncbi.nlm.nih.gov/pubmed/32435816 |
| Using viral load and epidemic dynamics to optimize pooled testing in resource constrained settings. | Cleary B, Hay JA, Blumenstiel B, Harden M, Cipicchio M, Bezney J, Simonton B, Hong D, Senghore M, Sesay AK, Gabriel S, Regev A, Mina MJ | medRxiv : the preprint server for health sciences | 32511487 | medRxiv | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/32511487 |
| Comprehensive Profiling of Zika Virus Risk with Natural and Artificial Mitigating Strategies, United States. | Mina MJ, Guterman LB, Allen KE, Omer SB | Emerging infectious diseases | 32043959 | Emerg Infect Dis | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32043959 |
| Development of at-home sample collection logistics for large-scale seroprevalence studies. | Aatresh AV, Cummings K, Gerstein H, Knight CS, Limberopolous A, Stasi MA, Bedugnis A, Somberg KA, França CT, Mina MJ | PloS one | 34735477 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34735477 |
| Mathematical Modeling to Inform Vaccination Strategies and Testing Approaches for Coronavirus Disease 2019 (COVID-19) in Nursing Homes. | Kahn R, Holmdahl I, Reddy S, Jernigan J, Mina MJ, Slayton RB | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 34086877 | Clin Infect Dis | 2022 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/34086877 |
| A Global Immunological Observatory to meet a time of pandemics. | Mina MJ, Metcalf CJE, McDermott AB, Douek DC, Farrar J, Grenfell BT | eLife | 32510329 | Elife | 2020 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/32510329 |
| Passive immunity for the treatment of influenza: quality not quantity. | Kanjilal S, Mina MJ | The Lancet. Respiratory medicine | 31582359 | Lancet Respir Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31582359 |
| Test sensitivity is secondary to frequency and turnaround time for COVID-19 screening. | Larremore DB, Wilder B, Lester E, Shehata S, Burke JM, Hay JA, Tambe M, Mina MJ, Parker R | Science advances | 33219112 | Sci Adv | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33219112 |
| Estimating epidemiologic dynamics from cross-sectional viral load distributions. | Hay JA, Kennedy-Shaffer L, Kanjilal S, Lennon NJ, Gabriel SB, Lipsitch M, Mina MJ | Science (New York, N.Y.) | 34083451 | Science | 2021 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/34083451 |
| Estimating epidemiologic dynamics from cross-sectional viral load distributions. | Hay JA, Kennedy-Shaffer L, Kanjilal S, Lennon NJ, Gabriel SB, Lipsitch M, Mina MJ | medRxiv : the preprint server for health sciences | 33594381 | medRxiv | 2021 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/33594381 |
| Clarifying the evidence on SARS-CoV-2 antigen rapid tests in public health responses to COVID-19. | Mina MJ, Peto TE, García-Fiñana M, Semple MG, Buchan IE | Lancet (London, England) | 33609444 | Lancet | 2021 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/33609444 |
| Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data. | De Salazar PM, Lu F, Hay JA, Gómez-Barroso D, Fernández-Navarro P, Martínez EV, Astray-Mochales J, Amillategui R, García-Fulgueiras A, Chirlaque MD, Sánchez-Migallón A, Larrauri A, Sierra MJ, Lipsitch M, Simón F, Santillana M, Hernán MA | PLoS computational biology | 35358171 | PLoS Comput Biol | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35358171 |
| Assessing the Effects of Measles Virus Infections on Childhood Infectious Disease Mortality in Brazil. | Xia S, Gullickson CC, Metcalf CJE, Grenfell BT, Mina MJ | The Journal of infectious diseases | 35767276 | J Infect Dis | 2022 Dec 28 | https://www.ncbi.nlm.nih.gov/pubmed/35767276 |
| Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance. | Larremore DB, Wilder B, Lester E, Shehata S, Burke JM, Hay JA, Milind T, Mina MJ, Parker R | medRxiv : the preprint server for health sciences | 32607516 | medRxiv | 2020 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/32607516 |
| Measles vaccine immune escape: Should we be concerned? | Yang L, Grenfell BT, Mina MJ | European journal of epidemiology | 31676977 | Eur J Epidemiol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31676977 |
| When intuition falters: repeated testing accuracy during an epidemic. | Hay JA, Hellewell J, Qiu X | European journal of epidemiology | 34322830 | Eur J Epidemiol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34322830 |
| Genetic screening for single-cell variability modulators driving therapy resistance. | Torre EA, Arai E, Bayatpour S, Jiang CL, Beck LE, Emert BL, Shaffer SM, Mellis IA, Fane ME, Alicea GM, Budinich KA, Weeraratna AT, Shi J, Raj A | Nature genetics | 33398196 | Nat Genet | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33398196 |
| Disrupting cellular memory to overcome drug resistance. | Harmange G, Hueros RAR, Schaff DL, Emert B, Saint-Antoine M, Kim LC, Niu Z, Nellore S, Fane ME, Alicea GM, Weeraratna AT, Simon MC, Singh A, Shaffer SM | Nature communications | 37932277 | Nat Commun | 2023 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/37932277 |
| Variability within rare cell states enables multiple paths toward drug resistance. | Emert BL, Cote CJ, Torre EA, Dardani IP, Jiang CL, Jain N, Shaffer SM, Raj A | Nature biotechnology | 33619394 | Nat Biotechnol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33619394 |
| Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages. | Acheampong KK, Schaff DL, Emert BL, Lake J, Reffsin S, Shea EK, Comar CE, Litzky LA, Khurram NA, Linn RL, Feldman M, Weiss SR, Montone KT, Cherry S, Shaffer SM | mBio | 35130722 | mBio | 2021 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/35130722 |
| Clonal differences underlie variable responses to sequential and prolonged treatment. | Schaff DL, Fasse AJ, White PE, Vander Velde RJ, Shaffer SM | Cell systems | 38401539 | Cell Syst | 2024 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/38401539 |
| Integrating mutational and nonmutational mechanisms of acquired therapy resistance within the Darwinian paradigm. | Vander Velde R, Shaffer S, Marusyk A | Trends in cancer | 35307314 | Trends Cancer | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35307314 |
| Clonal cell states link gastroesophageal junction tissues with metaplasia and cancer. | Gier RA, Bracht SA, Rong J, Reyes Hueros RA, Wahlsten ML, Cote C, DeMarshall M, Karakasheva TA, Strauss Starling A, Muir AB, Falk GW, Zhang NR, Shaffer SM | Nature communications | 41360789 | Nat Commun | 2025 Dec 8 | https://www.ncbi.nlm.nih.gov/pubmed/41360789 |
| IGF2BP1/IMP1 Deletion Enhances a Facultative Stem Cell State via Regulation of MAP1LC3B. | Parham LR, Williams PA, Katada K, Nettleford SK, Chatterji P, Acheampong KK, Danan CH, Ma X, Simon LA, Naughton KE, Mizuno R, Karakasheva T, McMillan EA, Whelan KA, Brady DC, Shaffer SM, Hamilton KE | Cellular and molecular gastroenterology and hepatology | 38081361 | Cell Mol Gastroenterol Hepatol | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38081361 |
| Clonal cell states link Barrett's esophagus and esophageal adenocarcinoma. | Gier RA, Hueros RAR, Rong J, DeMarshall M, Karakasheva TA, Muir AB, Falk GW, Zhang NR, Shaffer SM | bioRxiv : the preprint server for biology | 36747708 | bioRxiv | 2023 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/36747708 |
| Cancer-associated fibroblasts maintain critical pancreatic cancer cell lipid homeostasis in the tumor microenvironment. | Han X, Burrows M, Kim LC, Xu JP, Vostrejs W, Van Le TN, Poltorack C, Jiang Y, Cukierman E, Stanger BZ, Reiss KA, Shaffer SM, Mesaros C, Keith B, Simon MC | Cell reports | 39535921 | Cell Rep | 2024 Nov 26 | https://www.ncbi.nlm.nih.gov/pubmed/39535921 |
| Non-genetic differences underlie variability in proliferation among esophageal epithelial clones. | Reyes Hueros RA, Gier RA, Shaffer SM | PLoS computational biology | 39466790 | PLoS Comput Biol | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39466790 |
| Multiplexed enrichment and tracking of lineages with CloneSweeper. | Vander Velde RJ, Ng RWS, Coté C, Shaffer SM | bioRxiv : the preprint server for biology | 41659616 | bioRxiv | 2026 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/41659616 |
| Multiplexed detection of SARS-CoV-2 genomic and subgenomic RNA using in situ hybridization. | Acheampong KK, Schaff DL, Emert BL, Lake J, Reffsin S, Shea EK, Comar CE, Litzky LA, Khurram NA, Linn RL, Feldman M, Weiss SR, Montone KT, Cherry S, Shaffer SM | bioRxiv : the preprint server for biology | 34401878 | bioRxiv | 2021 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/34401878 |
| Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors. | Shaffer SM, Emert BL, Reyes Hueros RA, Cote C, Harmange G, Schaff DL, Sizemore AE, Gupte R, Torre E, Singh A, Bassett DS, Raj A | Cell | 32735851 | Cell | 2020 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/32735851 |
| Intrinsic Properties of the Lymph Node Render It Immunologically Susceptible to Metastasis. | Kahn BM, Ng RWS, Kim IK, Eskandarian C, Chen CO, Huang B, Lucas A, Li L, Maillard I, Stanger BZ | Cancer discovery | 40265527 | Cancer Discov | 2025 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/40265527 |
| Neuroproteasomes regulate endogenous tau paired helical filament formation in an APOE genotype- and age-dependent manner. | Paradise V, Konrad-Vicario KD, Nguyen C, Sharif NA, Wang X, Mukim RD, Sabu M, Corjuc BT, Bafia J, Fu J, Maldonado GC, Strickland M, Grauman SL, Figueroa H, Hyman BT, Holtzman DM, Nuriel T, Ramachandran KV | Nature neuroscience | 42215643 | Nat Neurosci | 2026 May 29 | https://www.ncbi.nlm.nih.gov/pubmed/42215643 |
| Advancements in APOE and dementia research: Highlights from the 2023 AAIC Advancements: APOE conference. | Kloske CM, Belloy ME, Blue EE, Bowman GR, Carrillo MC, Chen X, Chiba-Falek O, Davis AA, Paolo GD, Garretti F, Gate D, Golden LR, Heinecke JW, Herz J, Huang Y, Iadecola C, Johnson LA, Kanekiyo T, Karch CM, Khvorova A, Koppes-den Hertog SJ, Lamb BT, Lawler PE, Guen YL, Litvinchuk A, Liu CC, Mahinrad S, Marcora E, Marino C, Michaelson DM, Miller JJ, Morganti JM, Narayan PS, Naslavsky MS, Oosthoek M, Ramachandran KV, Ramakrishnan A, Raulin AC, Robert A, Saleh RNM, Sexton C, Shah N, Shue F, Sible IJ, Soranno A, Strickland MR, Tcw J, Thierry M, Tsai LH, Tuckey RA, Ulrich JD, van der Kant R, Wang N, Wellington CL, Weninger SC, Yassine HN, Zhao N, Bu G, Goate AM, Holtzman DM | Alzheimer's & dementia : the journal of the Alzheimer's Association | 39031528 | Alzheimers Dement | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39031528 |
| Regulation of synapse density by Pumilio RNA-binding proteins. | Randolph LK, Pauers MM, Martínez JC, Sibener LJ, Zrzavy MA, Sharif NA, Gonzalez TM, Ramachandran KV, Dominguez D, Hengst U | Cell reports | 39298318 | Cell Rep | 2024 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/39298318 |
| A coagulation defect arising from heterozygous premature termination of tissue factor. | Schulman S, El-Darzi E, Florido MH, Friesen M, Merrill-Skoloff G, Brake MA, Schuster CR, Lin L, Westrick RJ, Cowan CA, Flaumenhaft R, NIHR BioResource, Ouwehand WH, Peerlinck K, Freson K, Turro E, Furie B | The Journal of clinical investigation | 32663190 | J Clin Invest | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/32663190 |
| Human Genetic Variation in F3 and Its Impact on Tissue Factor-Dependent Disease. | Park JK, Brake MA, Schulman S | Seminars in thrombosis and hemostasis | 37201535 | Semin Thromb Hemost | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37201535 |
| Targeting cargo to an unconventional secretory system within megakaryocytes allows the release of transgenic proteins from platelets. | Asquith NL, Becker IC, Scimone MT, Boccia T, Camacho V, Barrachina MN, Guo S, Freire D, Machlus K, Schulman S, Flaumenhaft R, Italiano JE | Journal of thrombosis and haemostasis : JTH | 39122192 | J Thromb Haemost | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39122192 |
| TMEM16E regulates endothelial cell procoagulant activity and thrombosis. | Schmaier AA, Anderson PF, Chen SM, El-Darzi E, Aivasovsky I, Kaushik MP, Sack KD, Hartzell HC, Parikh SM, Flaumenhaft R, Schulman S | The Journal of clinical investigation | 36951953 | J Clin Invest | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36951953 |
| Human missense variants in F3 impair the initiation of blood coagulation. | Ansari SA, Brake MA, Pathak N, Flaumenhaft JT, Ludington JG, Panwar N, Turro E, Schulman S | Blood | 41100734 | Blood | 2026 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/41100734 |
| Plasma peptidomics: cutting coagulation down to size. | Brake MA, Schulman S | Journal of thrombosis and haemostasis : JTH | 40738586 | J Thromb Haemost | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40738586 |
| Associations of thrombocytopenia, transaminase elevations, and transfusion with laboratory coagulation tests in women with preeclampsia: a cross-sectional study. | Combs DJ, Gray KJ, Schulman S, Bateman BT | International journal of obstetric anesthesia | 33798794 | Int J Obstet Anesth | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33798794 |
| How the tissue factor-VIIa complex keeps two substrates in the loop. | Schulman S | Journal of thrombosis and haemostasis : JTH | 33405385 | J Thromb Haemost | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33405385 |
| The unfolded protein response links ER stress to cancer-associated thrombosis. | Muse O, Patell R, Peters CG, Yang M, El-Darzi E, Schulman S, Falanga A, Marchetti M, Russo L, Zwicker JI, Flaumenhaft R | JCI insight | 37651191 | JCI Insight | 2023 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/37651191 |
| Lipid-associated macrophages reshape BAT cell identity in obesity. | Sciarretta F, Ninni A, Zaccaria F, Chiurchiù V, Bertola A, Karlinsey K, Jia W, Ceci V, Di Biagio C, Xu Z, Gaudioso F, Tortolici F, Tiberi M, Zhang J, Carotti S, Boudina S, Grumati P, Zhou B, Brestoff JR, Ivanov S, Aquilano K, Lettieri-Barbato D | Cell reports | 38963761 | Cell Rep | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/38963761 |
| Adipocyte lipin 1 expression associates with human metabolic health and regulates systemic metabolism in mice. | LaPoint A, Singer JM, Ferguson D, Shew TM, Renkemeyer MK, Palacios HH, Field RL, Yerrathota S, Kumari R, Shankaran M, Smith GI, Yoshino J, He M, Patti GJ, Hellerstein MK, Klein S, Brestoff JR, Morris EM, Finck BN, Lutkewitte AJ | The Journal of clinical investigation | 39405118 | J Clin Invest | 2024 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/39405118 |
| Brown fat fuels the fire in fever. | Krysa SJ, Brestoff JR | Journal of lipid research | 39332526 | J Lipid Res | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39332526 |
| Using information theory to optimize a diagnostic threshold to match physician-ordering practice. | Zaydman MA, Brestoff JR, Jackups R Jr | Journal of biomedical informatics | 33766781 | J Biomed Inform | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33766781 |
| Technological features of blast identification in the cerebrospinal fluid: A systematic review of flow cytometry and laboratory haematology methods. | Frater JL, Shirai CL, Brestoff JR | International journal of laboratory hematology | 35785436 | Int J Lab Hematol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35785436 |
| Dietary lipids inhibit mitochondria transfer to macrophages to divert adipocyte-derived mitochondria into the blood. | Borcherding N, Jia W, Giwa R, Field RL, Moley JR, Kopecky BJ, Chan MM, Yang BQ, Sabio JM, Walker EC, Osorio O, Bredemeyer AL, Pietka T, Alexander-Brett J, Morley SC, Artyomov MN, Abumrad NA, Schilling J, Lavine K, Crewe C, Brestoff JR | Cell metabolism | 36070756 | Cell Metab | 2022 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/36070756 |
| Coronavirus Disease 2019 Severity in Obese Patients May Be Linked to Viral Load and Immune Response. | Lewis AM, Zhang X, Brestoff JR | The Journal of infectious diseases | 34331761 | J Infect Dis | 2021 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/34331761 |
| Myeloid-specific Asxl2 deletion limits diet-induced obesity by regulating energy expenditure. | Zou W, Rohatgi N, Brestoff JR, Moley JR, Li Y, Williams JW, Alippe Y, Pan H, Pietka TA, Mbalaviele G, Newberry EP, Davidson NO, Dey A, Shoghi KI, Head RD, Wickline SA, Randolph GJ, Abumrad NA, Teitelbaum SL | The Journal of clinical investigation | 32310225 | J Clin Invest | 2020 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/32310225 |
| Blood natural killer cell deficiency reveals an immunotherapy strategy for atopic dermatitis. | Mack MR, Brestoff JR, Berrien-Elliott MM, Trier AM, Yang TB, McCullen M, Collins PL, Niu H, Bodet ND, Wagner JA, Park E, Xu AZ, Wang F, Chibnall R, Council ML, Heffington C, Kreisel F, Margolis DJ, Sheinbein D, Lovato P, Vivier E, Cella M, Colonna M, Yokoyama WM, Oltz EM, Fehniger TA, Kim BS | Science translational medicine | 32102931 | Sci Transl Med | 2020 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/32102931 |
| A systematic review and meta-analysis of obesity and COVID-19 outcomes. | Zhang X, Lewis AM, Moley JR, Brestoff JR | Scientific reports | 33785830 | Sci Rep | 2021 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/33785830 |
| Intercellular Mitochondria Transfer to Macrophages Regulates White Adipose Tissue Homeostasis and Is Impaired in Obesity. | Brestoff JR, Wilen CB, Moley JR, Li Y, Zou W, Malvin NP, Rowen MN, Saunders BT, Ma H, Mack MR, Hykes BL Jr, Balce DR, Orvedahl A, Williams JW, Rohatgi N, Wang X, McAllaster MR, Handley SA, Kim BS, Doench JG, Zinselmeyer BH, Diamond MS, Virgin HW, Gelman AE, Teitelbaum SL | Cell metabolism | 33278339 | Cell Metab | 2021 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/33278339 |
| Multifaceted mitochondrial quality control in brown adipose tissue. | Aquilano K, Zhou B, Brestoff JR, Lettieri-Barbato D | Trends in cell biology | 36272883 | Trends Cell Biol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36272883 |
| A type 2 immune circuit in the stomach controls mammalian adaptation to dietary chitin. | Kim DH, Wang Y, Jung H, Field RL, Zhang X, Liu TC, Ma C, Fraser JS, Brestoff JR, Van Dyken SJ | Science (New York, N.Y.) | 37676935 | Science | 2023 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/37676935 |
| Ejection of damaged mitochondria and their removal by macrophages ensure efficient thermogenesis in brown adipose tissue. | Rosina M, Ceci V, Turchi R, Chuan L, Borcherding N, Sciarretta F, Sánchez-Díaz M, Tortolici F, Karlinsey K, Chiurchiù V, Fuoco C, Giwa R, Field RL, Audano M, Arena S, Palma A, Riccio F, Shamsi F, Renzone G, Verri M, Crescenzi A, Rizza S, Faienza F, Filomeni G, Kooijman S, Rufini S, de Vries AAF, Scaloni A, Mitro N, Tseng YH, Hidalgo A, Zhou B, Brestoff JR, Aquilano K, Lettieri-Barbato D | Cell metabolism | 35305295 | Cell Metab | 2022 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/35305295 |
| Ablation of Fat Cells in Adult Mice Induces Massive Bone Gain. | Zou W, Rohatgi N, Brestoff JR, Li Y, Barve RA, Tycksen E, Kim Y, Silva MJ, Teitelbaum SL | Cell metabolism | 33027637 | Cell Metab | 2020 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/33027637 |
| Induction of a torpor-like hypothermic and hypometabolic state in rodents by ultrasound. | Yang Y, Yuan J, Field RL, Ye D, Hu Z, Xu K, Xu L, Gong Y, Yue Y, Kravitz AV, Bruchas MR, Cui J, Brestoff JR, Chen H | Nature metabolism | 37231250 | Nat Metab | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37231250 |
| A guide to studying mitochondria transfer. | Tiash S, Brestoff JR, Crewe C | Nature cell biology | 37853133 | Nat Cell Biol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37853133 |
| The power and potential of mitochondria transfer. | Borcherding N, Brestoff JR | Nature | 37938702 | Nature | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37938702 |
| Mitochondria Transfer to CD4(+) T Cells May Alleviate Rheumatoid Arthritis by Suppressing Pro-Inflammatory Cytokine Production. | Giwa R, Brestoff JR | Immunometabolism | 35444834 | Immunometabolism | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35444834 |
| Hepatic lipids promote liver metastasis. | Li Y, Su X, Rohatgi N, Zhang Y, Brestoff JR, Shoghi KI, Xu Y, Semenkovich CF, Harris CA, Peterson LL, Weilbaecher KN, Teitelbaum SL, Zou W | JCI insight | 32879136 | JCI Insight | 2020 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/32879136 |
| Cardiac Troponin to Adjudicate Subclinical Heart Failure in Diabetic Patients and a Murine Model of Metabolic Syndrome. | Brown HM, Spies NC, Jia W, Moley J, Lawless S, Roemmich B, Brestoff JR, Zaydman MA, Farnsworth CW | The journal of applied laboratory medicine | 39225064 | J Appl Lab Med | 2024 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/39225064 |
| Full spectrum flow cytometry in the clinical laboratory. | Brestoff JR | International journal of laboratory hematology | 37211417 | Int J Lab Hematol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37211417 |
| Burning Fat to Fuel EVs. | Crewe C, Brestoff JR | Diabetes | 37862579 | Diabetes | 2023 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/37862579 |
| A randomized controlled trial comparing brief online self-guided interventions for loneliness. | Kaveladze BT, Gastelum SF, Ngo DC, Delacruz P, Cohen KA, Käll A, Andersson G, Schleider JL, Schueller SM | Journal of consulting and clinical psychology | 39325409 | J Consult Clin Psychol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39325409 |
| Embracing Scientific Humility and Complexity: Learning "What Works for Whom" in Youth Psychotherapy Research. | Mullarkey MC, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 34096811 | J Clin Child Adolesc Psychol | 2021 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/34096811 |
| The impact of COVID-19 on U.S. adolescents: loss of basic needs and engagement in health risk behaviors. | Shroff A, Fassler J, Fox KR, Schleider JL | Current psychology (New Brunswick, N.J.) | 35095242 | Curr Psychol | 2022 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/35095242 |
| Brief School-Based Interventions Targeting Student Mental Health or Well-Being: A Systematic Review and Meta-Analysis. | Cohen KA, Ito S, Ahuvia IL, Yang Y, Zhang Y, Renshaw TL, Larson M, Cook C, Hill S, Liao J, Rapoport A, Smock A, Yang M, Schleider JL | Clinical child and family psychology review | 38884838 | Clin Child Fam Psychol Rev | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38884838 |
| The fundamental need for lived experience perspectives in developing and evaluating psychotherapies. | Schleider JL | Journal of consulting and clinical psychology | 36795434 | J Consult Clin Psychol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36795434 |
| Brief Interventions for Self-injurious Thoughts and Behaviors in Young People: A Systematic Review. | Dobias ML, Chen S, Fox KR, Schleider JL | Clinical child and family psychology review | 36715874 | Clin Child Fam Psychol Rev | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36715874 |
| Realizing the untapped promise of single-session interventions for eating disorders. | Schleider JL, Smith AC, Ahuvia I | The International journal of eating disorders | 36815724 | Int J Eat Disord | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36815724 |
| Linguistic distancing predicts response to a digital single-session intervention for adolescent depression. | Cohen KA, Shroff A, Nook EC, Schleider JL | Behaviour research and therapy | 36323056 | Behav Res Ther | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36323056 |
| A "Papageno" Story Interview Suicide Prevention Intervention for Young Adults With Past-Month Suicidal Ideation: Uncontrolled Single-Group Pilot Study of Feedback and Acceptability. | Harness J, Gardner K, Schleider JL, King CA | JMIR formative research | 41129818 | JMIR Form Res | 2025 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/41129818 |
| Technology Matters: Online, self-help single session interventions could expand current provision, improving early access to help for young people with depression symptoms, including minority groups. | Loades ME, Schleider JL | Child and adolescent mental health | 37415054 | Child Adolesc Ment Health | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37415054 |
| Ecological-Systems Contributors to Internalizing Symptoms in a US Sample of Adolescents During the COVID-19 Pandemic. | Thorpe D, Mirhashem R, Shen J, Roulston C, Fox K, Schleider J | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37616119 | J Clin Child Adolesc Psychol | 2025 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/37616119 |
| Application of the Minimal Clinically Important Difference to Adolescent Mental Health Interventions: A Case Study for Hopelessness. | Thakur H, Parkhurst JT, Schleider JL, Lekkas D | Child psychiatry and human development | 41855002 | Child Psychiatry Hum Dev | 2026 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/41855002 |
| When is Psychotherapy Brief? Considering Sociodemographic Factors, Problem Complexity, and Problem Type in U.S. Adolescents. | Abel MR, Bianco A, Gilbert R, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 32356677 | J Clin Child Adolesc Psychol | 2022 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/32356677 |
| Loneliness in Gender-Diverse and Sexual Orientation-Diverse Adolescents: Measurement Invariance Analyses and Between-Group Comparisons. | McDanal R, Schleider JL, Fox KR, Eaton NR | Assessment | 34963320 | Assessment | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34963320 |
| Sexual Health Education Experiences and Recommendations from the Perspective of LGBTQ+ Youth. | Hobaica S, Szkody E, Sotomayor I, Liao J, Schleider JL | Journal of sex research | 38880957 | J Sex Res | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/38880957 |
| Longer Single-Session Interventions May Not Be Better: Evidence From Two Randomized Controlled Trials With Online Workers Facing Mental-Health Struggles. | Kaveladze B, Ghosh A, Funkhouser CJ, Schueller SM, Schleider JL | Clinical psychological science : a journal of the Association for Psychological Science | 40843242 | Clin Psychol Sci | 2025 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/40843242 |
| Project Body Neutrality: Piloting a digital single-session intervention for adolescent body image and depression. | Smith AC, Ahuvia I, Ito S, Schleider JL | The International journal of eating disorders | 37129116 | Int J Eat Disord | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37129116 |
| Evaluating a treatment selection approach for online single-session interventions for adolescent depression. | Ahuvia IL, Mullarkey MC, Sung JY, Fox KR, Schleider JL | Journal of child psychology and psychiatry, and allied disciplines | 37183368 | J Child Psychol Psychiatry | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37183368 |
| Adolescents' beliefs about what symptoms constitute depression: Are more expansive definitions helpful or harmful? | Ahuvia IL, Fox KR, Schleider JL | SSM. Mental health | 38188868 | SSM Ment Health | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/38188868 |
| Mixed-Methods Examination of Adolescent-Reported Barriers to Accessing Mental Health Services. | Mora Ringle VA, Sung JY, Roulston CA, Schleider JL | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 37804301 | J Adolesc Health | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37804301 |
| Leveraging the Strengths of Psychologists With Lived Experience of Psychopathology. | Victor SE, Schleider JL, Ammerman BA, Bradford DE, Devendorf AR, Gruber J, Gunaydin LA, Hallion LS, Kaufman EA, Lewis SP, Stage DL | Perspectives on psychological science : a journal of the Association for Psychological Science | 35748769 | Perspect Psychol Sci | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35748769 |
| Beliefs about depression relate to active and avoidant coping in high-symptom adolescents. | Pinder JB, Ahuvia IL, Chen S, Schleider JL | Journal of affective disorders | 37977300 | J Affect Disord | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/37977300 |
| Referring Adolescent Primary Care Patients to Single-Session Interventions for Anxiety and Depression: Protocol for a Feasibility Study. | Eyllon M, Dalal M, Jans L, Sotomayor I, Peloquin G, Yon J, Fritz R, Schleider J | JMIR research protocols | 37556202 | JMIR Res Protoc | 2023 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/37556202 |
| Accessibility and Utility of an Electronic Self-Guided Safety Plan for Adolescents. | Methi N, Weeks I, Hunt R, McGuire TC, Rubin A, Decker M, Schleider JL, Wang SB, Fox K | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 39312731 | J Clin Child Adolesc Psychol | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39312731 |
| Developing, Deploying, and Evaluating Digital Mental Health Interventions in Spaces of Online Help- and Information-Seeking. | Kruzan KP, Fitzsimmons-Craft EE, Dobias M, Schleider JL, Pratap A | Procedia computer science | 37063642 | Procedia Comput Sci | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/37063642 |
| Single-Session Interventions Embedded Within Tumblr: Acceptability, Feasibility, and Utility Study. | Dobias ML, Morris RR, Schleider JL | JMIR formative research | 35877163 | JMIR Form Res | 2022 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/35877163 |
| Structural Correlates of Mental Health Support Access among Sexual Minority Youth of Color during COVID-19. | Roulston C, McKetta S, Price M, Fox KR, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 35259041 | J Clin Child Adolesc Psychol | 2023 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/35259041 |
| Barriers to Mental Health Support and Recommendations for Improvement From the Perspectives of LGBTQ+ Youth. | Szkody E, Sotomayor I, Hobaica S, Jans L, Lopez C, Pinder J, Schleider JL | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 40817898 | J Adolesc Health | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40817898 |
| Future Directions in Single-Session Youth Mental Health Interventions. | Schleider JL, Dobias ML, Sung JY, Mullarkey MC | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 31799863 | J Clin Child Adolesc Psychol | 2020 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/31799863 |
| Web-Based Single Session Intervention for Perceived Control Over Anxiety During COVID-19: Randomized Controlled Trial. | Mullarkey M, Dobias M, Sung J, Ahuvia I, Shumake J, Beevers C, Schleider J | JMIR mental health | 35230962 | JMIR Ment Health | 2022 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/35230962 |
| A randomized trial of online single-session interventions for adolescent depression during COVID-19. | Schleider JL, Mullarkey MC, Fox KR, Dobias ML, Shroff A, Hart EA, Roulston CA | Nature human behaviour | 34887544 | Nat Hum Behav | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34887544 |
| Acceptability and Utility of an Open-Access, Online Single-Session Intervention Platform for Adolescent Mental Health. | Schleider JL, Dobias M, Sung J, Mumper E, Mullarkey MC | JMIR mental health | 32602846 | JMIR Ment Health | 2020 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/32602846 |
| Retiring, Rethinking, and Reconstructing the Norm of Once-Weekly Psychotherapy. | Schleider JL, Dobias ML, Mullarkey MC, Ollendick T | Administration and policy in mental health | 32989621 | Adm Policy Ment Health | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32989621 |
| Timing matters in (mis)identifying moderators and mediators of digital interventions for eating disorders: Commentary on McClure et al. (2023). | Schleider JL, Smith AC, Graham AK | The International journal of eating disorders | 38450821 | Int J Eat Disord | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38450821 |
| A Digital Single-Session Intervention Platform for Youth Mental Health: Cultural Adaptation, Evaluation, and Dissemination. | Shroff A, Roulston C, Fassler J, Dierschke NA, Todd JSP, Ríos-Herrera Á, Plastino KA, Schleider JL | JMIR mental health | 36787180 | JMIR Ment Health | 2023 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/36787180 |
| Debate: Where to next for universal school-based mental health interventions? Tensions in prevention - To build better school-based programming, we must start with what we know. | Cohen KA, Bruns EJ, Schleider JL | Child and adolescent mental health | 40018868 | Child Adolesc Ment Health | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40018868 |
| Randomized trial of a digital single-session intervention for body image and mood concerns among LGBTQ+ adolescents. | Smith AC, Ahuvia IL, Zapata JP, Cohen KA, Graham AK, Schleider JL | Behaviour research and therapy | 40578276 | Behav Res Ther | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40578276 |
| Empowering Anxious Parents to Manage Child Avoidance Behaviors: Randomized Control Trial of a Single-Session Intervention for Parental Accommodation. | Sung JY, Mumper E, Schleider JL | JMIR mental health | 34255718 | JMIR Ment Health | 2021 Jul 6 | https://www.ncbi.nlm.nih.gov/pubmed/34255718 |
| Not niche: eating disorders as an example in the dangers of overspecialisation. | Haynos AF, Egbert AH, Fitzsimmons-Craft EE, Levinson CA, Schleider JL | The British journal of psychiatry : the journal of mental science | 38097370 | Br J Psychiatry | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38097370 |
| A Digital Single-Session Intervention (Project Engage) to Address Fear of Negative Evaluation Among College Students: Pilot Randomized Controlled Trial. | Ghosh A, Cohen KA, Jans L, Busch CA, McDanal R, Yang Y, Cooper KM, Schleider JL | JMIR mental health | 37995114 | JMIR Ment Health | 2023 Nov 23 | https://www.ncbi.nlm.nih.gov/pubmed/37995114 |
| Serving the Underserved? Uptake, Effectiveness, and Acceptability of Digital SSIs for Rural American Adolescents. | Szkody E, Chang YW, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37931065 | J Clin Child Adolesc Psychol | 2025 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/37931065 |
| Corrigendum to "Randomized trial of a digital single-session intervention for body image and mood concerns among LGBTQ+ adolescents" [Behaviour Research and Therapy 193 (2025) 104809]. | Smith AC, Ahuvia IL, Zapata JP, Cohen KA, Graham AK, Schleider JL | Behaviour research and therapy | 42091415 | Behav Res Ther | 2026 Jul | https://www.ncbi.nlm.nih.gov/pubmed/42091415 |
| Urban scaling of health outcomes: a protocol for a scoping review. | McCulley EM, Mullachery P, Rodriguez D, Diez Roux AV, Bilal U | BMJ open | 31767587 | BMJ Open | 2019 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/31767587 |
| [Epidemiologic evidence on the role of hospitality venues in the transmission of COVID-19: A rapid review of the literature]. | Bilal U, Gullón P, Padilla-Bernáldez J | Gaceta sanitaria | 33933322 | Gac Sanit | 2022 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/33933322 |
| Exploring inequalities in life expectancy and lifespan variation by race/ethnicity and urbanicity in the United States: 1990 to 2019. | De Ramos IP, Auchincloss AH, Bilal U | SSM - population health | 36148325 | SSM Popul Health | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36148325 |
| Racial/Ethnic Disparities in Hepatocellular Carcinoma: The Role of Neighborhood Socioeconomic Deprivation. | Lazo M, Martinez-Folgar K, Bilal U | Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology | 35775232 | Cancer Epidemiol Biomarkers Prev | 2022 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/35775232 |
| Urban social determinants of non-communicable diseases risk factors in Argentina. | Tumas N, Rodríguez López S, Bilal U, Ortigoza AF, Diez Roux AV | Health & place | 34210611 | Health Place | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34210611 |
| Spatial Inequities in COVID-19 Testing, Positivity, Confirmed Cases, and Mortality in 3 U.S. Cities : An Ecological Study. | Bilal U, Tabb LP, Barber S, Diez Roux AV | Annals of internal medicine | 33780289 | Ann Intern Med | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33780289 |
| Measuring variation in infant mortality and deaths of despair by US congressional district in Pennsylvania: a methodological case study. | Schnake-Mahl A, Anfuso G, Goldstein ND, Purtle J, Eberth JM, Ortigoza A, Bilal U | American journal of epidemiology | 38412272 | Am J Epidemiol | 2024 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/38412272 |
| Association Between Household Deprivation and Living in Informal Settlements and Incidence of Diarrhea in Children Under 5 in Eleven Latin American Cities. | Alpaugh V, Ortigoza A, Braverman Bronstein A, Pérez-Ferrer C, Wagner-Gutierrez N, Pacifico N, Ezeh A, Caiaffa WT, Lovasi G, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 38652338 | J Urban Health | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38652338 |
| Intraurban socioeconomic inequalities in life expectancy: a population-based cross-sectional analysis in the city of Córdoba, Argentina (2015-2018). | Rodríguez López S, Tumas N, Bilal U, Moore KA, Acharya B, Quick H, Quistberg DA, Acevedo GE, Diez Roux AV | BMJ open | 36691155 | BMJ Open | 2022 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/36691155 |
| Socioeconomic deprivation and changes in the retail food environment of Mexico from 2010 to 2020. | Ramírez-Toscano Y, Pérez-Ferrer C, Bilal U, Auchincloss AH, Barrientos-Gutierrez T | Health & place | 35932595 | Health Place | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35932595 |
| Inequalities by Income in the Prevalence of Cardiovascular Disease and Its Risk Factors in the Adult Population of Catalonia. | Mullachery PH, Vela E, Cleries M, Comin-Colet J, Nasir K, Diez Roux AV, Cainzos-Achirica M, Mauri J, Bilal U | Journal of the American Heart Association | 36000437 | J Am Heart Assoc | 2022 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/36000437 |
| Inequities in spatial accessibility to COVID-19 testing in 30 large US cities. | Mullachery PH, Li R, Melly S, Kolker J, Barber S, Diez Roux AV, Bilal U | Social science & medicine (1982) | 36049353 | Soc Sci Med | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36049353 |
| Health and Environmental Co-Benefits of City Urban Form in Latin America: An Ecological Study. | Avila-Palencia I, Sánchez BN, Rodríguez DA, Perez-Ferrer C, Miranda JJ, Gouveia N, Bilal U, Useche AF, Wilches-Mogollon MA, Moore K, Sarmiento OL, Diez Roux AV | Sustainability | 36926000 | Sustainability | 2022 Nov 8 | https://www.ncbi.nlm.nih.gov/pubmed/36926000 |
| Implications of the 2021 ESC cardiovascular risk classification among 283,000 European immigrants living in a low-risk region: a population-based analysis in Catalonia. | Vela E, Cleries M, Bilal U, Banach M, McEvoy JW, Mortensen MB, Blaha MJ, Nasir K, Comin-Colet J, Mauri J, Cainzos-Achirica M | Archives of medical science : AMS | 36817660 | Arch Med Sci | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36817660 |
| The urban built environment and adult BMI, obesity, and diabetes in Latin American cities. | Anza-Ramirez C, Lazo M, Zafra-Tanaka JH, Avila-Palencia I, Bilal U, Hernández-Vásquez A, Knoll C, Lopez-Olmedo N, Mazariegos M, Moore K, Rodriguez DA, Sarmiento OL, Stern D, Tumas N, Miranda JJ | Nature communications | 36581636 | Nat Commun | 2022 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/36581636 |
| Variation in youth and young adult homicide rates and their association with city characteristics in Latin America: the SALURBAL study. | de Lima Friche AA, Silva UM, Bilal U, Sarmiento OL, de Salles Dias MA, Prado-Galbarro FJ, Briceño-León R, Alazraqui M, Diez-Roux AV, Caiaffa WT | Lancet regional health. Americas | 36970493 | Lancet Reg Health Am | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36970493 |
| The effect of population mobility on COVID-19 incidence in 314 Latin American cities: a longitudinal ecological study with mobile phone location data. | Kephart JL, Delclòs-Alió X, Rodríguez DA, Sarmiento OL, Barrientos-Gutiérrez T, Ramirez-Zea M, Quistberg DA, Bilal U, Diez Roux AV | The Lancet. Digital health | 34456179 | Lancet Digit Health | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34456179 |
| Indoor Dining and In-Person Learning: A Comparison of 30 US Cities. | O'Leary G, Schnake-Mahl AS, Vaidya V, Bilal U, Kolker J | International journal of environmental research and public health | 34682712 | Int J Environ Res Public Health | 2021 Oct 19 | https://www.ncbi.nlm.nih.gov/pubmed/34682712 |
| Built environment profiles for Latin American urban settings: The SALURBAL study. | Sarmiento OL, Useche AF, Rodriguez DA, Dronova I, Guaje O, Montes F, Stankov I, Wilches MA, Bilal U, Wang X, Guzmán LA, Peña F, Quistberg DA, Guerra-Gomez JA, Diez Roux AV | PloS one | 34699532 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34699532 |
| Socioeconomic Disparities in Hypertension by Levels of Green Space Availability: A Cross-Sectional Study in Philadelphia, PA. | Koh C, Kondo MC, Rollins H, Bilal U | International journal of environmental research and public health | 35206224 | Int J Environ Res Public Health | 2022 Feb 11 | https://www.ncbi.nlm.nih.gov/pubmed/35206224 |
| Variability and social patterning of cancer mortality in 343 Latin American cities: an ecological study. | Alfaro T, Martinez-Folgar K, Stern D, Wilches-Mogollon MA, Muñoz MP, Quick H, Alazraqui M, Ramirez-Zea M, Miranda JJ, Lazo M, Caiaffa WT, Roux AVD, Bilal U | The Lancet. Global health | 39890227 | Lancet Glob Health | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39890227 |
| Economic Insecurity and Deaths of Despair in US Counties. | Knapp EA, Bilal U, Dean LT, Lazo M, Celentano DD | American journal of epidemiology | 31172197 | Am J Epidemiol | 2019 Dec 31 | https://www.ncbi.nlm.nih.gov/pubmed/31172197 |
| Polypill for Population-Level Primary Cardiovascular Prevention in Underserved Populations-A Social Epidemiology Counterargument. | Cainzos-Achirica M, Bilal U | The American journal of medicine | 32442515 | Am J Med | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32442515 |
| Impact of the COVID-19 pandemic on life expectancy in Madrid (Spain). | Trias-Llimós S, Bilal U | Journal of public health (Oxford, England) | 32542350 | J Public Health (Oxf) | 2020 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/32542350 |
| Assessing the Retail Food Environment in Madrid: An Evaluation of Administrative Data against Ground Truthing. | Díez J, Cebrecos A, Galán I, Pérez-Freixo H, Franco M, Bilal U | International journal of environmental research and public health | 31546670 | Int J Environ Res Public Health | 2019 Sep 21 | https://www.ncbi.nlm.nih.gov/pubmed/31546670 |
| Polypill for Cardiovascular Disease Prevention in an Underserved Population. | Bilal U, Cainzos-Achirica M | The New England journal of medicine | 31875510 | N Engl J Med | 2020 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/31875510 |
| Monitoring life expectancy levels during the COVID-19 pandemic: Example of the unequal impact of the first wave on Spanish regions. | Trias-Llimós S, Riffe T, Bilal U | PloS one | 33152009 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33152009 |
| Excess Mortality During the COVID-19 Pandemic in Guatemala. | Martinez-Folgar K, Alburez-Gutierrez D, Paniagua-Avila A, Ramirez-Zea M, Bilal U | American journal of public health | 34554821 | Am J Public Health | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/34554821 |
| Urban scaling of opioid analgesic sales in the United States. | Mullachery PH, Bilal U | PloS one | 34637453 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34637453 |
| Reduction in socioeconomic inequalities in self-reported mental health conditions with increasing greenspace exposure. | Kondo MC, McIntire RK, Bilal U, Schinasi LH | Health & place | 36193582 | Health Place | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36193582 |
| Invited Commentary: Some Social Epidemiologic Lessons From the COVID-19 Pandemic. | Schnake-Mahl AS, Bilal U | American journal of epidemiology | 36617304 | Am J Epidemiol | 2023 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/36617304 |
| Spatial Heterogeneity in Fatal Overdose Rate Trends in Mexican Cities: 2005-2021. | Henson RM, Mullachery PH, Sánchez-Pájaro A, Cruz-Cruz C, Bilal U, Langellier B, Barrientos-Gutiérrez T | American journal of public health | 38723222 | Am J Public Health | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38723222 |
| Validation of a neighborhood-level COVID Local Risk Index in 47 large U.S. cities. | Spoer BR, McCulley E, Lampe TM, Hsieh PY, Chen A, Ofrane R, Rollins H, Thorpe LE, Bilal U, Gourevitch MN | Health & place | 35623163 | Health Place | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35623163 |
| Social cross-over in cardiovascular disease: context matters. | Mullachery PH, Bilal U | Heart (British Cardiac Society) | 33568428 | Heart | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33568428 |
| Higher COVID-19 Vaccination And Narrower Disparities In US Cities With Paid Sick Leave Compared To Those Without. | Schnake-Mahl AS, O'Leary G, Mullachery PH, Skinner A, Kolker J, Diez Roux AV, Raifman JR, Bilal U | Health affairs (Project Hope) | 36343316 | Health Aff (Millwood) | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36343316 |
| Gender inequality, women's empowerment, and adolescent birth rates in 363 Latin American cities. | Braverman-Bronstein A, Ortigoza AF, Vidaña-Pérez D, Barrientos-Gutiérrez T, Baldovino-Chiquillo L, Bilal U, Friche AAL, Diez-Canseco F, Maslowsky J, Vives V A, Diez Roux AV | Social science & medicine (1982) | 36446141 | Soc Sci Med | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36446141 |
| Understanding the obesity dynamics by socioeconomic status in Colombian and Mexican cities using a system dynamics model. | Meisel JD, Esguerra V, Pérez Ferrer C, Stankov I, Montes F, Tumas N, Bilal U, Valdivia JA, Diez Roux AV, Sarmiento OL | Heliyon | 39605831 | Heliyon | 2024 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/39605831 |
| Understanding Immigration as a Social Determinant of Health: Cardiovascular Disease in Hispanics/Latinos and South Asians in the United States. | Guadamuz JS, Kapoor K, Lazo M, Eleazar A, Yahya T, Kanaya AM, Cainzos-Achirica M, Bilal U | Current atherosclerosis reports | 33772650 | Curr Atheroscler Rep | 2021 Mar 27 | https://www.ncbi.nlm.nih.gov/pubmed/33772650 |
| Accessibility and availability of alcohol outlets around schools: An ecological study in the city of Madrid, Spain, according to socioeconomic area-level. | Martín-Turrero I, Valiente R, Molina-de la Fuente I, Bilal U, Lazo M, Sureda X | Environmental research | 34774513 | Environ Res | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34774513 |
| Potential impacts of policies to reduce purchasing of ultra-processed foods in Mexico at different stages of the social transition: an agent-based modelling approach. | Langellier BA, Stankov I, Hammond RA, Bilal U, Auchincloss AH, Barrientos-Gutierrez T, Cardoso LO, Diez Roux AV | Public health nutrition | 34895382 | Public Health Nutr | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34895382 |
| Heterogeneity in Spatial Inequities in COVID-19 Vaccination Across 16 Large US Cities. | Bilal U, Mullachery PH, Schnake-Mahl A, Rollins H, McCulley E, Kolker J, Barber S, Diez Roux AV | American journal of epidemiology | 35452081 | Am J Epidemiol | 2022 Aug 22 | https://www.ncbi.nlm.nih.gov/pubmed/35452081 |
| Variation in Non-external and External Causes of Death in Peru in Relation to the COVID-19 Lockdown. | Calderon-Anyosa RJC, Bilal U, Kaufman JS | The Yale journal of biology and medicine | 33795980 | Yale J Biol Med | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33795980 |
| Social disparities in flood exposure and associations with the urban environment in 44,698 neighborhoods in 276 cities in eight Latin American countries. | Kephart JL, Bilal U, Gouveia N, Sarmiento OL, Shingara E, Moreno KR, Bakhtsiyarava M, Rodriguez JP, Ayala S, Carrasco-Escobar G, Diez Roux AV, SALURBAL-Climate Project | medRxiv : the preprint server for health sciences | 39006415 | medRxiv | 2024 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/39006415 |
| Does geographic availability of alcohol influence drinking in adolescents? A systematic review of literature associations. | Martín-Turrero I, Valiente R, Pastor A, Bilal U, Sureda X | Health & place | 39368139 | Health Place | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39368139 |
| Ambient nitrogen dioxide in 47 187 neighbourhoods across 326 cities in eight Latin American countries: population exposures and associations with urban features. | Kephart JL, Gouveia N, Rodríguez DA, Indvik K, Alfaro T, Texcalac-Sangrador JL, Miranda JJ, Bilal U, Diez Roux AV | The Lancet. Planetary health | 38056968 | Lancet Planet Health | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38056968 |
| Ambient nitrogen dioxide in 47,187 neighborhoods across 326 cities in eight Latin American countries: population exposures and associations with urban features. | Kephart JL, Gouveia N, Rodriguez DA, Indvik K, Alfaro T, Texcalac JL, Miranda JJ, Bilal U, Roux AVD | medRxiv : the preprint server for health sciences | 37205591 | medRxiv | 2023 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/37205591 |
| Estimating and mapping cigarette butt littering in urban environments: A GIS approach. | Valiente R, Escobar F, Pearce J, Bilal U, Franco M, Sureda X | Environmental research | 32004828 | Environ Res | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32004828 |
| Inequalities in life expectancy in six large Latin American cities from the SALURBAL study: an ecological analysis. | Bilal U, Alazraqui M, Caiaffa WT, Lopez-Olmedo N, Martinez-Folgar K, Miranda JJ, Rodriguez DA, Vives A, Diez-Roux AV | The Lancet. Planetary health | 31836433 | Lancet Planet Health | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31836433 |
| What Has It Meant for Me to Be an Epidemiologist in 2020? | Bilal U | Epidemiology (Cambridge, Mass.) | 33122555 | Epidemiology | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33122555 |
| Does a physical activity supportive environment ameliorate or exacerbate socioeconomic inequities in incident coronary heart disease? | Gullon P, Bilal U, Hirsch JA, Rundle AG, Judd S, Safford MM, Lovasi GS | Journal of epidemiology and community health | 33318134 | J Epidemiol Community Health | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33318134 |
| Longitudinal changes in the retail food environment in Mexico and their association with diabetes. | Pérez-Ferrer C, Auchincloss AH, Barrientos-Gutierrez T, Colchero MA, de Oliveira Cardoso L, Carvalho de Menezes M, Bilal U | Health & place | 33039800 | Health Place | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33039800 |
| Mortality amenable to healthcare in Latin American cities: a cross-sectional study examining between-country variation in amenable mortality and the role of urban metrics. | Mullachery PH, Rodriguez DA, Miranda JJ, López-Olmedo N, Martinez-Folgar K, Barreto ML, Diez Roux AV, Bilal U | International journal of epidemiology | 34339492 | Int J Epidemiol | 2022 Feb 18 | https://www.ncbi.nlm.nih.gov/pubmed/34339492 |
| Scaling of mortality in 742 metropolitan areas of the Americas. | Bilal U, de Castro CP, Alfaro T, Barrientos-Gutierrez T, Barreto ML, Leveau CM, Martinez-Folgar K, Miranda JJ, Montes F, Mullachery P, Pina MF, Rodriguez DA, Dos Santos GF, Andrade RFS, Diez Roux AV | Science advances | 34878846 | Sci Adv | 2021 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/34878846 |
| Schnake-Mahl and Bilal Respond to "Structural Racism and COVID-19 Mortality in the US". | Schnake-Mahl AS, Bilal U | American journal of epidemiology | 33710318 | Am J Epidemiol | 2021 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/33710318 |
| Burden of cardiovascular risk factors and disease in five Asian groups in Catalonia: a disaggregated, population-based analysis of 121 000 first-generation Asian immigrants. | Satish P, Vela E, Bilal U, Cleries M, Kanaya AM, Kandula N, Virani SS, Islam N, Valero-Elizondo J, Yahya T, Comin-Colet J, Nasir K, Mauri J, Cainzos-Achirica M | European journal of preventive cardiology | 33969397 | Eur J Prev Cardiol | 2022 May 6 | https://www.ncbi.nlm.nih.gov/pubmed/33969397 |
| COVID-19, Ambient Air Pollution, and Environmental Health Inequities in Latin American Cities. | Kephart JL, Avila-Palencia I, Bilal U, Gouveia N, Caiaffa WT, Diez Roux AV | Journal of urban health : bulletin of the New York Academy of Medicine | 33471282 | J Urban Health | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33471282 |
| Life expectancy and mortality in 363 cities of Latin America. | Bilal U, Hessel P, Perez-Ferrer C, Michael YL, Alfaro T, Tenorio-Mucha J, Friche AAL, Pina MF, Vives A, Quick H, Alazraqui M, Rodriguez DA, Miranda JJ, Diez-Roux AV, SALURBAL group | Nature medicine | 33495602 | Nat Med | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33495602 |
| Linking historical discriminatory housing patterns to the contemporary food environment in Baltimore. | Sadler RC, Bilal U, Furr-Holden CD | Spatial and spatio-temporal epidemiology | 33509435 | Spat Spatiotemporal Epidemiol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33509435 |
| COVID-19 and the worsening of health inequities in Santiago, Chile. | Bilal U, Alfaro T, Vives A | International journal of epidemiology | 33537771 | Int J Epidemiol | 2021 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/33537771 |
| Socioeconomic Inequalities in the Retail Food Environment around Schools in a Southern European Context. | Díez J, Cebrecos A, Rapela A, Borrell LN, Bilal U, Franco M | Nutrients | 31277242 | Nutrients | 2019 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/31277242 |
| Complex Systems Approaches to Diet: A Systematic Review. | Langellier BA, Bilal U, Montes F, Meisel JD, Cardoso LO, Hammond RA | American journal of preventive medicine | 31326011 | Am J Prev Med | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31326011 |
| Disaggregating disparities: A case study of heterogenous COVID-19 disparities across waves, geographies, social vulnerability, and political lean in Louisiana. | Schnake-Mahl A, Bilal U | Preventive medicine reports | 35637894 | Prev Med Rep | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35637894 |
| Urban scaling of opioid overdose deaths in the USA: a cross-sectional study in three periods between 2005 and 2017. | Mullachery PH, Lankenau S, Diez Roux AV, Li R, Henson RM, Bilal U | BMJ open | 35241464 | BMJ Open | 2022 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/35241464 |
| Excess Mortality during the COVID-19 Pandemic in Cities of Chile: Magnitude, Inequalities, and Urban Determinants. | Alfaro T, Martinez-Folgar K, Vives A, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 35688966 | J Urban Health | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/35688966 |
| A scaling investigation of urban form features in Latin America cities. | Paiva ASS, Santos GF, Castro CP, Rodriguez DA, Bilal U, Sousa Filho JF, Freitas A, Montes F, Dronova I, Barreto ML, Andrade RFS | PloS one | 38109440 | PLoS One | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38109440 |
| Spatial Inequities in Life Expectancy in Small Areas of Buenos Aires, Argentina 2015-2017. | Trotta A, Bilal U, Acharya B, Quick H, Moore K, Perner SM, Alazraqui M, Diez Roux A | Journal of urban health : bulletin of the New York Academy of Medicine | 37225944 | J Urban Health | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37225944 |
| Does Urban Greenspace Reduce Mortality Inequalities Based on Poverty, Race, or Both in Philadelphia, PA? | Schinasi LH, Kondo MC, Edwards J, Clougherty JE, De Roos AJ, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 37563520 | J Urban Health | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37563520 |
| Impact of an enhanced sobriety checkpoints programme and publicity campaign on motor vehicle collisions, injuries and deaths in Leon, MX: a synthetic control study. | Quistberg DA, Perez-Ferrer C, Bilal U, Rodriguez Hernandez JL, Ramírez-Toscano Y, Cardenas Cardenas LM, Junquera-Badilla I, Yamada G, Barrientos-Gutierrez T, Diez Roux AV | Injury prevention : journal of the International Society for Child and Adolescent Injury Prevention | 39038940 | Inj Prev | 2026 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/39038940 |
| Area-Level Social Vulnerability and Severe COVID-19: A Case-Control Study Using Electronic Health Records from Multiple Health Systems in the Southeastern Pennsylvania Region. | Mullachery PH, Bilal U, Li R, McClure LA | Journal of urban health : bulletin of the New York Academy of Medicine | 38740710 | J Urban Health | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38740710 |
| Spatial Variability and Clustering of Life Expectancy in the United States: 1990-2019. | De Ramos IP, McAlexander TP, Bilal U | Epidemiology (Cambridge, Mass.) | 40433983 | Epidemiology | 2025 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/40433983 |
| Twenty-five-year changes in alcohol environment in US metropolitan areas: Examining patterns by area level sociodemographic characteristics. | Li J, Lazo M, Bilal U, Tabb LP, Hirsch JA, Lovasi GS, Melly S, Sánchez BN | Cities (London, England) | 40896296 | Cities | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/40896296 |
| Tracking COVID-19 Inequities Across Jurisdictions Represented in the Big Cities Health Coalition (BCHC): The COVID-19 Health Inequities in BCHC Cities Dashboard. | Bilal U, McCulley E, Li R, Rollins H, Schnake-Mahl A, Mullachery PH, Vaidya V, Koh C, Dureja K, Sharaf A, Furukawa A, Juliano C, Barber S, Kolker J, Diez Roux AV | American journal of public health | 35420892 | Am J Public Health | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35420892 |
| Evaluation of the national sobriety checkpoints program in Mexico: a difference-in-difference approach with variation in timing of program adoption. | Mullachery PH, Quistberg DA, Lazo M, Indvik K, Perez-Ferrer C, López-Olmedo N, Colchero MA, Bilal U | Injury epidemiology | 36411475 | Inj Epidemiol | 2022 Nov 21 | https://www.ncbi.nlm.nih.gov/pubmed/36411475 |
| Access to and availability of exercise facilities in Madrid: an equity perspective. | Cereijo L, Gullón P, Cebrecos A, Bilal U, Santacruz JA, Badland H, Franco M | International journal of health geographics | 31266518 | Int J Health Geogr | 2019 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/31266518 |
| Mapping the visibility of smokers across a large capital city. | Valiente R, Escobar F, Pearce J, Bilal U, Franco M, Sureda X | Environmental research | 31706598 | Environ Res | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31706598 |
| Urban landscape and street-design factors associated with road-traffic mortality in Latin America between 2010 and 2016 (SALURBAL): an ecological study. | Quistberg DA, Hessel P, Rodriguez DA, Sarmiento OL, Bilal U, Caiaffa WT, Miranda JJ, de Pina MF, Hernández-Vásquez A, Diez Roux AV | The Lancet. Planetary health | 35150622 | Lancet Planet Health | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35150622 |
| Urban Scaling of Health Outcomes: a Scoping Review. | McCulley EM, Mullachery PH, Ortigoza AF, Rodríguez DA, Diez Roux AV, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 35513600 | J Urban Health | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35513600 |
| Racial/ethnic and neighbourhood social vulnerability disparities in COVID-19 testing positivity, hospitalization, and in-hospital mortality in a large hospital system in Pennsylvania: A prospective study of electronic health records. | Bilal U, Jemmott JB, Schnake-Mahl A, Murphy K, Momplaisir F | Lancet regional health. Americas | 35262038 | Lancet Reg Health Am | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35262038 |
| The Impact of Keeping Indoor Dining Closed on COVID-19 Rates Among Large US Cities: A Quasi-Experimental Design. | Schnake-Mahl AS, O'Leary G, Mullachery PH, Vaidya V, Connor G, Rollins H, Kolker J, Diez Roux AV, Bilal U | Epidemiology (Cambridge, Mass.) | 34799474 | Epidemiology | 2022 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/34799474 |
| Health and Health-Related Resources in Newly Designated Federally Qualified Opportunity Zones: United States, 2012-2016. | Hirsch JA, Zhao Y, Bilal U, Neckerman KM, Michael YL | American journal of public health | 31944851 | Am J Public Health | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31944851 |
| Social inequities in cardiovascular risk factors in women and men by autonomous regions in Spain. | Gullón P, Díez J, Cainzos-Achirica M, Franco M, Bilal U | Gaceta sanitaria | 32674863 | Gac Sanit | 2021 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/32674863 |
| Adaptation and Evaluation of the Nutrition Environment Measures Survey in Stores to Assess Mediterranean Food Environments (NEMS-S-MED). | Martínez-García A, Díez J, Fernández-Escobar C, Trescastro-López EM, Pereyra-Zamora P, Ariza C, Bilal U, Franco M | International journal of environmental research and public health | 32992984 | Int J Environ Res Public Health | 2020 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/32992984 |
| Geospatial Data Aggregation Methods for Novel Geographies: Validating Congressional District Life Expectancy Estimates. | Schnake-Mahl A, Anfuso G, Hernandez SM, Bilal U | Epidemiology (Cambridge, Mass.) | 39329432 | Epidemiology | 2025 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/39329432 |
| Exercise facility availability and incidence of type 2 diabetes and complications in Spain: A population-based retrospective cohort 2015-2018. | Cereijo L, Gullón P, Del Cura I, Valadés D, Bilal U, Franco M, Badland H | Health & place | 37087897 | Health Place | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37087897 |
| How Can We Measure Alcohol Outlet Density Around Schools? A Comparison Between Two Buffer-Based Methods. | Martín-Turrero I, Sureda X, Escobar F, Bilal U, Berasaluce M, Valiente R | Journal of urban health : bulletin of the New York Academy of Medicine | 37351726 | J Urban Health | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37351726 |
| Social disparities in neighborhood flood exposure in 44,698 urban neighborhoods in Latin America. | Kephart JL, Bilal U, Gouveia N, Sarmiento OL, Shingara E, Moreno KR, Bakhtsiyarava M, Rodriguez JP, Ayala S, Carrasco-Escobar G, Roux AVD, SALURBAL Group | Nature cities | 40190693 | Nat Cities | 2025 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/40190693 |
| Court-mandated redistricting and disparities in infant mortality and deaths of despair. | Schnake-Mahl A, Anfuso G, Bilal U, Goldstein ND, Purtle J, Hernandez SM, Eberth JM | BMC public health | 40108583 | BMC Public Health | 2025 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/40108583 |
| Heterogeneity in disparities by income in cardiovascular risk factors across 209 US metropolitan areas. | Kundrick J, Rollins H, Mullachery P, Sharaf A, Schnake-Mahl A, Diez Roux AV, Bilal U | Preventive medicine reports | 39512778 | Prev Med Rep | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39512778 |
| A COMPARATIVE CASE STUDY OF WALKING ENVIRONMENT IN MADRID AND PHILADELPHIA USING MULTIPLE SAMPLING METHODS AND STREET VIRTUAL AUDITS. | Gullón P, Bilal U, Sánchez P, Díez J, Lovasi GS, Franco M | Cities & health | 33718600 | Cities Health | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33718600 |
| Social inequalities in mobility during and following the COVID-19 associated lockdown of the Madrid metropolitan area in Spain. | Glodeanu A, Gullón P, Bilal U | Health & place | 34022543 | Health Place | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34022543 |
| Heterogeneity in Disparities in Life Expectancy Across US Metropolitan Areas. | Schnake-Mahl AS, Mullachery PH, Purtle J, Li R, Diez Roux AV, Bilal U | Epidemiology (Cambridge, Mass.) | 36220582 | Epidemiology | 2022 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/36220582 |
| Considering multiple governance levels in epidemiologic analysis of public policies. | Schnake-Mahl AS, Jahn JL, Purtle J, Bilal U | Social science & medicine (1982) | 36274459 | Soc Sci Med | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36274459 |
| COVID-19 Outcomes Among the Hispanic Population of 27 Large US Cities, 2020-2021. | De Ramos IP, Lazo M, Schnake-Mahl A, Li R, Martinez-Donate AP, Roux AVD, Bilal U | American journal of public health | 35588187 | Am J Public Health | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35588187 |
| How education and racial segregation intersect in neighborhoods with persistently low COVID-19 vaccination rates in Philadelphia. | Rich JA, Miech EJ, Bilal U, Corbin TJ | BMC public health | 35614426 | BMC Public Health | 2022 May 25 | https://www.ncbi.nlm.nih.gov/pubmed/35614426 |
| Changes in Racial/Ethnic Disparities in Opioid-Related Outcomes in Urban Areas during the COVID-19 Pandemic: A Rapid Review of the Literature. | Moran KM, Mullachery PH, Lankenau S, Bilal U | International journal of environmental research and public health | 35954640 | Int J Environ Res Public Health | 2022 Jul 29 | https://www.ncbi.nlm.nih.gov/pubmed/35954640 |
| Future temperature-related mortality in Latin American cities under climate change and population scenarios. | Bakhtsiyarava M, Kephart JL, Sánchez BN, Ramarao MVS, Arunachalam S, Gouveia N, Dronova I, Schinasi LH, Bilal U, Caiaffa WT, Jaffe A, Diez Roux AV, Rodríguez DA, SALURBAL | Environment international | 40737859 | Environ Int | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40737859 |
| PRUNE1 c.933G>A synonymous variant induces exon 7 skipping, disrupts the DHHA2 domain, and leads to an atypical NMIHBA syndrome presentation: Case report and review of the literature. | Magyar CL, Murdock DR, Burrage LC, Dai H, Lalani SR, Lewis RA, Lin Y, Astudillo MF, Rosenfeld JA, Tran AA, Gibson JB, Undiagnosed Diseases Network, Bacino CA, Lee BH, Chao HT | American journal of medical genetics. Part A | 35194938 | Am J Med Genet A | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35194938 |
| De novo EIF2AK1 and EIF2AK2 Variants Are Associated with Developmental Delay, Leukoencephalopathy, and Neurologic Decompensation. | Mao D, Reuter CM, Ruzhnikov MRZ, Beck AE, Farrow EG, Emrick LT, Rosenfeld JA, Mackenzie KM, Robak L, Wheeler MT, Burrage LC, Jain M, Liu P, Calame D, Küry S, Sillesen M, Schmitz-Abe K, Tonduti D, Spaccini L, Iascone M, Genetti CA, Koenig MK, Graf M, Tran A, Alejandro M, Undiagnosed Diseases Network, Lee BH, Thiffault I, Agrawal PB, Bernstein JA, Bellen HJ, Chao HT | American journal of human genetics | 32197074 | Am J Hum Genet | 2020 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/32197074 |
| Wide range of phenotypic severity in individuals with late truncations unique to the predominant CDKL5 transcript in the brain. | Keehan L, Haviland I, Gofin Y, Swanson LC, El Achkar CM, Schreiber J, VanNoy GE, O'Heir E, O'Donnell-Luria A, Lewis RA, Magoulas P, Tran A, Azamian MS, Chao HT, Pham L, Samaco RC, Elsea S, Thorpe E, Kesari A, Perry D, Lee B, Lalani SR, Rosenfeld JA, Olson HE, Burrage LC, Undiagnosed Diseases Network | American journal of medical genetics. Part A | 35934918 | Am J Med Genet A | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35934918 |
| An Integrated Phenotypic and Genotypic Approach Reveals a High-Risk Subtype Association for EBF3 Missense Variants Affecting the Zinc Finger Domain. | Deisseroth CA, Lerma VC, Magyar CL, Pfliger JM, Nayak A, Bliss ND, LeMaire AW, Narayanan V, Balak C, Zanni G, Valente EM, Bertini E, Benke PJ, Wangler MF, Chao HT | Annals of neurology | 35340043 | Ann Neurol | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35340043 |
| BAP1 promotes osteoclast function by metabolic reprogramming. | Rohatgi N, Zou W, Li Y, Cho K, Collins PL, Tycksen E, Pandey G, DeSelm CJ, Patti GJ, Dey A, Teitelbaum SL | Nature communications | 37740028 | Nat Commun | 2023 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/37740028 |
| Dendritic Cell Paucity Leads to Dysfunctional Immune Surveillance in Pancreatic Cancer. | Hegde S, Krisnawan VE, Herzog BH, Zuo C, Breden MA, Knolhoff BL, Hogg GD, Tang JP, Baer JM, Mpoy C, Lee KB, Alexander KA, Rogers BE, Murphy KM, Hawkins WG, Fields RC, DeSelm CJ, Schwarz JK, DeNardo DG | Cancer cell | 32183949 | Cancer Cell | 2020 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/32183949 |
| Intrinsic tumor resistance to CAR T cells is a dynamic transcriptional state that is exploitable with low-dose radiation. | Kim AB, Chou SY, Kang S, Kwon E, Inkman M, Szymanski J, Andruska N, Colgan C, Zhang J, Yang JC, Singh N, DeSelm CJ | Blood advances | 37093643 | Blood Adv | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37093643 |
| CARD8 is an inflammasome sensor for HIV-1 protease activity. | Wang Q, Gao H, Clark KM, Mugisha CS, Davis K, Tang JP, Harlan GH, DeSelm CJ, Presti RM, Kutluay SB, Shan L | Science (New York, N.Y.) | 33542150 | Science | 2021 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/33542150 |
| Chimeric antigen receptor macrophages target and resorb amyloid plaques. | Kim AB, Xiao Q, Yan P, Pan Q, Pandey G, Grathwohl S, Gonzales E, Xu I, Cho Y, Haecker H, Epelman S, Diwan A, Lee JM, DeSelm CJ | JCI insight | 38516884 | JCI Insight | 2024 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/38516884 |
| Memory-like Differentiation, Tumor-Targeting mAbs, and Chimeric Antigen Receptors Enhance Natural Killer Cell Responses to Head and Neck Cancer. | Jacobs MT, Wong P, Zhou AY, Becker-Hapak M, Marin ND, Marsala L, Foster M, Foltz JA, Cubitt CC, Tran J, Russler-Germain DA, Neal C, Kersting-Schadek S, Chang L, Schappe T, Pence P, McClain E, Zevallos JP, Rich JT, Paniello RC, Jackson RS, Pipkorn P, Adkins DR, DeSelm CJ, Berrien-Elliott MM, Puram SV, Fehniger TA | Clinical cancer research : an official journal of the American Association for Cancer Research | 37556118 | Clin Cancer Res | 2023 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/37556118 |
| Chimeric Antigen Receptor Macrophages Target and Resorb Amyloid Plaques in a Mouse Model of Alzheimer's Disease. | Pan Q, Yan P, Kim AB, Xiao Q, Pandey G, Haecker H, Epelman S, Diwan A, Lee JM, DeSelm CJ | bioRxiv : the preprint server for biology | 37162824 | bioRxiv | 2023 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/37162824 |
| Exploitable mechanisms of antibody and CAR mediated macrophage cytotoxicity. | Liu T, Zhang M, Farsh T, Li H, Kishishita A, Barpanda A, Leung SG, Zhu J, Jung H, Hua JT, Zhu X, Kim AB, Goo YA, Son M, Kim J, Subramanian A, Sjöström M, Fuh KC, Chapman JS, Carnevale J, Gilbert LA, Lakkaraju A, Bruno PM, Quigley D, Wiita AP, Feng FY, DeSelm CJ | Nature communications | 40595560 | Nat Commun | 2025 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/40595560 |
| Oversight of direct-to-consumer neurotechnologies. | Wexler A, Reiner PB | Science (New York, N.Y.) | 30655433 | Science | 2019 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/30655433 |
| Innovative Practice Outside of Medical Institutions. | Wexler A | The American journal of bioethics : AJOB | 31135304 | Am J Bioeth | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31135304 |
| To Counsel or Not to Counsel: Physician Attitudes and Experiences with Do-It-Yourself (DIY) Fecal Microbiota Transplant (FMT). | Colt SF, Choi RJ, Wexler A | AJOB empirical bioethics | 38935586 | AJOB Empir Bioeth | 2024 Oct-Dec | https://www.ncbi.nlm.nih.gov/pubmed/38935586 |
| Understanding the Scope of Do-It-Yourself Fecal Microbiota Transplant. | Ekekezie C, Perler BK, Wexler A, Duff C, Lillis CJ, Kelly CR | The American journal of gastroenterology | 31972620 | Am J Gastroenterol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/31972620 |
| Pregnant at the start of the pandemic: a content analysis of COVID-19-related posts on online pregnancy discussion boards. | Choi R, Nagappan A, Kopyto D, Wexler A | BMC pregnancy and childbirth | 35710387 | BMC Pregnancy Childbirth | 2022 Jun 16 | https://www.ncbi.nlm.nih.gov/pubmed/35710387 |
| Neuroenhancement for sale: assessing the website claims of neurofeedback providers in the United States. | Wexler A, Nagappan A, Kopyto D, Choi R | Journal of cognitive enhancement : towards the integration of theory and practice | 34164596 | J Cogn Enhanc | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34164596 |
| Translational Neuroethics: A Vision for a More Integrated, Inclusive, and Impactful Field. | Wexler A, Specker Sullivan L | AJOB neuroscience | 34851808 | AJOB Neurosci | 2023 Oct-Dec | https://www.ncbi.nlm.nih.gov/pubmed/34851808 |
| Mapping the Landscape of Do-it-Yourself Medicine. | Wexler A | Citizen science : theory and practice | 36632334 | Citiz Sci | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36632334 |
| Neurofeedback as placebo: a case of unintentional deception? | Kalokairinou L, Specker Sullivan L, Wexler A | Journal of medical ethics | 34521768 | J Med Ethics | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34521768 |
| Pregnancy and health in the age of the Internet: A content analysis of online "birth club" forums. | Wexler A, Davoudi A, Weissenbacher D, Choi R, O'Connor K, Cummings H, Gonzalez-Hernandez G | PloS one | 32287266 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32287266 |
| Separating neuroethics from neurohype. | Wexler A | Nature biotechnology | 31399721 | Nat Biotechnol | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31399721 |
| Off-Label Promotion of Transcranial Magnetic Stimulation on Provider Websites. | Wexler A, Nagappan A, Kopyto D, Santarnecchi E, Pascual-Leone A | Brain stimulation | 33901705 | Brain Stimul | 2021 May-Jun | https://www.ncbi.nlm.nih.gov/pubmed/33901705 |
| Brain Wellness "Spas"-Anticipating the Off-label Promotion of Psychedelics. | Wexler A, Sisti D | JAMA psychiatry | 35767292 | JAMA Psychiatry | 2022 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/35767292 |
| Ethical issues in direct-to-consumer healthcare: A scoping review. | Nagappan A, Kalokairinou L, Wexler A | PLOS digital health | 38349902 | PLOS Digit Health | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38349902 |
| Policies of US Companies Offering Direct-to-Consumer Laboratory Tests. | Kalokairinou L, Choi R, Wei NY, Wexler A | JAMA internal medicine | 37721771 | JAMA Intern Med | 2023 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/37721771 |
| Direct-to-Consumer Neurotechnology: A Grounded Appraisal. | Wexler A | AJOB neuroscience | 31642764 | AJOB Neurosci | 2019 Oct-Dec | https://www.ncbi.nlm.nih.gov/pubmed/31642764 |
| Realizing Present and Future Promise of DIY Biology and Medicine through a Trust Architecture. | Rasmussen LM, Guerrini CJ, Kuiken T, Nebeker C, Pearlman A, Ware SB, Wexler A, Zettler PJ | The Hastings Center report | 33315254 | Hastings Cent Rep | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33315254 |
| The Future Is P-Tau-Anticipating Direct-to-Consumer Alzheimer Disease Blood Tests. | Largent EA, Wexler A, Karlawish J | JAMA neurology | 33393982 | JAMA Neurol | 2021 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/33393982 |
| The promise of direct-to-consumer COVID-19 testing: ethical and regulatory issues. | Kalokairinou L, Zettler PJ, Nagappan A, Kyweluk MA, Wexler A | Journal of law and the biosciences | 33569177 | J Law Biosci | 2020 Jan-Jun | https://www.ncbi.nlm.nih.gov/pubmed/33569177 |
| The Urgent Need to Better Integrate Neuroscience and Neuroethics. | Wexler A | AJOB neuroscience | 34029492 | AJOB Neurosci | 2020 Jul-Sep | https://www.ncbi.nlm.nih.gov/pubmed/34029492 |
| Direct-to-consumer orthodontics: surveying the user experience. | Wexler A, Nagappan A, Beswerchij A, Choi R | Journal of the American Dental Association (1939) | 32718492 | J Am Dent Assoc | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/32718492 |
| Ethical considerations for researchers developing and testing minimal-risk devices. | Wexler A, Largent E | Nature communications | 37087446 | Nat Commun | 2023 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/37087446 |
| Author's response. | Wexler A | Journal of the American Dental Association (1939) | 33413846 | J Am Dent Assoc | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33413846 |
| Ethical and Legal Considerations of Alternative Neurotherapies. | Nagappan A, Kalokairinou L, Wexler A | AJOB neuroscience | 33759705 | AJOB Neurosci | 2021 Oct-Dec | https://www.ncbi.nlm.nih.gov/pubmed/33759705 |
| Opportunity Cost or Opportunity Lost: An Empirical Assessment of Ethical Concerns and Attitudes of EEG Neurofeedback Users. | Kalokairinou L, Choi R, Nagappan A, Wexler A | Neuroethics | 36249541 | Neuroethics | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36249541 |
| Extinction blunts paraventricular thalamic contributions to heroin relapse. | Giannotti G, Gong S, Fayette N, Heinsbroek JA, Orfila JE, Herson PS, Ford CP, Peters J | Cell reports | 34433067 | Cell Rep | 2021 Aug 24 | https://www.ncbi.nlm.nih.gov/pubmed/34433067 |
| Circuit selectivity in drug versus natural reward seeking behaviors. | Nall RW, Heinsbroek JA, Nentwig TB, Kalivas PW, Bobadilla AC | Journal of neurochemistry | 33420731 | J Neurochem | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33420731 |
| Ca(V)3.1 T-type calcium channels are important for spatial memory processing in the dorsal subiculum. | Joksimovic SM, Ghodsi SM, Heinsbroek JA, Orfila JE, Busquet N, Tesic V, Valdez R, Fine-Raquet B, Jevtovic-Todorovic V, Raol YH, Herson PS, Todorovic SM | Neuropharmacology | 36586474 | Neuropharmacology | 2023 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/36586474 |
| Cocaine shifts dopamine D2 receptor sensitivity to gate conditioned behaviors. | Gong S, Fayette N, Heinsbroek JA, Ford CP | Neuron | 34506723 | Neuron | 2021 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/34506723 |
| Opposing Regulation of Cocaine Seeking by Glutamate and GABA Neurons in the Ventral Pallidum. | Heinsbroek JA, Bobadilla AC, Dereschewitz E, Assali A, Chalhoub RM, Cowan CW, Kalivas PW | Cell reports | 32049028 | Cell Rep | 2020 Feb 11 | https://www.ncbi.nlm.nih.gov/pubmed/32049028 |
| Glutamatergic Systems and Memory Mechanisms Underlying Opioid Addiction. | Heinsbroek JA, De Vries TJ, Peters J | Cold Spring Harbor perspectives in medicine | 32341068 | Cold Spring Harb Perspect Med | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/32341068 |
| Ventral pallidal regulation of motivated behaviors and reinforcement. | Soares-Cunha C, Heinsbroek JA | Frontiers in neural circuits | 36817646 | Front Neural Circuits | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36817646 |
| Oxytocin and orexin systems bidirectionally regulate the ability of opioid cues to bias reward seeking. | Giannotti G, Mottarlini F, Heinsbroek JA, Mandel MR, James MH, Peters J | Translational psychiatry | 36195606 | Transl Psychiatry | 2022 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/36195606 |
| A common limiter circuit for opioid choice and relapse identified in a rodent addiction model. | Heinsbroek JA, Giannotti G, Mandel MR, Josey M, Aston-Jones G, James MH, Peters J | Nature communications | 34373454 | Nat Commun | 2021 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/34373454 |
| Tabernanthalog Reduces Motivation for Heroin and Alcohol in a Polydrug Use Model. | Heinsbroek JA, Giannotti G, Bonilla J, Olson DE, Peters J | Psychedelic medicine (New Rochelle, N.Y.) | 37360328 | Psychedelic Med (New Rochelle) | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/37360328 |
| The psychedelic drug DOI reduces heroin motivation by targeting 5-HT2A receptors in a heroin and alcohol co-use model. | Bonilla J, Giannotti G, Kregar NP, Heinsbroek JA, Olson DE, Peters J | Neuropharmacology | 39341333 | Neuropharmacology | 2024 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/39341333 |
| Ventral pallidal perineuronal nets regulate opioid relapse. | Nogueira M, Giannotti G, Miller CN, Guaderrama SD, Kregar NP, Wiedmeyer B, Fayette N, Heinsbroek JA | bioRxiv : the preprint server for biology | 41648183 | bioRxiv | 2026 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/41648183 |
| Comparative genomics of symbiotic Photobacterium using highly contiguous genome assemblies from long read sequences. | Gould AL, Henderson JB | Microbial genomics | 38112751 | Microb Genom | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38112751 |
| Museum Genomics Illuminate the High Specificity of a Bioluminescent Symbiosis for a Genus of Reef Fish. | Gould AL, Fritts-Penniman A, Gaisiner A | Frontiers in ecology and evolution | 34485316 | Front Ecol Evol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34485316 |
| Chromosome-Level Genome Assembly of the Bioluminescent Cardinalfish Siphamia tubifer: An Emerging Model for Symbiosis Research. | Gould AL, Henderson JB, Lam AW | Genome biology and evolution | 35349687 | Genome Biol Evol | 2022 Apr 10 | https://www.ncbi.nlm.nih.gov/pubmed/35349687 |
| Strain-level diversity of symbiont communities between individuals and populations of a bioluminescent fish. | Gould AL, Donohoo SA, Román ED, Neff EE | The ISME journal | 37891426 | ISME J | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37891426 |
| Oxygen toxicity causes cyclic damage by destabilizing specific Fe-S cluster-containing protein complexes. | Baik AH, Haribowo AG, Chen X, Queliconi BB, Barrios AM, Garg A, Maishan M, Campos AR, Matthay MA, Jain IH | Molecular cell | 36893757 | Mol Cell | 2023 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/36893757 |
| Turning the Oxygen Dial: Balancing the Highs and Lows. | Baik AH, Jain IH | Trends in cell biology | 32386878 | Trends Cell Biol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32386878 |
| Organ-specific fuel rewiring in acute and chronic hypoxia redistributes glucose and fatty acid metabolism. | Midha AD, Zhou Y, Queliconi BB, Barrios AM, Haribowo AG, Chew BTL, Fong COY, Blecha JE, VanBrocklin H, Seo Y, Jain IH | Cell metabolism | 36889284 | Cell Metab | 2023 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/36889284 |
| HypoxyStat, a small-molecule form of hypoxia therapy that increases oxygen-hemoglobin affinity. | Blume SY, Garg A, Martí-Mateos Y, Midha AD, Chew BTL, Lin B, Yu C, Dick R, Lee PS, Situ E, Sarwaikar R, Green E, Ramanan V, Grotenbreg G, Hoek M, Sinz C, Jain IH | Cell | 39965572 | Cell | 2025 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/39965572 |
| In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response. | Chen X, Haribowo AG, Baik AH, Fossati A, Stevenson E, Chen YR, Reyes NS, Peng T, Matthay MA, Traglia M, Pico AR, Jarosz DF, Buchwalter A, Ghaemmaghami S, Swaney DL, Jain IH | Science advances | 38064566 | Sci Adv | 2023 Dec 8 | https://www.ncbi.nlm.nih.gov/pubmed/38064566 |
| The Goldilocks Oxygen Principle: not too little and not too much. | Flanigan WR, Jain IH | Nature cardiovascular research | 36816751 | Nat Cardiovasc Res | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36816751 |
| Hypoxia rescues complex 1-associated disease caused by proteostatic defects. | Garg A, Desousa BR, Roy R, Flis A, Blume SY, Abe Y, Melo AA, Cupo RR, Grigorean G, Southworth DR, Shorter J, Jain IH | Nature metabolism | 42420651 | Nat Metab | 2026 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/42420651 |
| A p62-dependent rheostat dictates micronuclei catastrophe and chromosome rearrangements. | Martin S, Scorzoni S, Cordone S, Mazzagatti A, Beznoussenko GV, Gunn AL, Di Bona M, Eliezer Y, Leor G, Ben-Yishay T, Loffreda A, Cancila V, Rainone MC, Ippolito MR, Martis V, Bedin F, Garrè M, Vaites LP, Vasapolli P, Polo S, Parazzoli D, Tripodo C, Mironov AA, Cuomo A, Ben-David U, Bakhoum SF, Hatch EM, Ly P, Santaguida S | Science (New York, N.Y.) | 39208097 | Science | 2024 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/39208097 |
| Micronuclear collapse from oxidative damage. | Di Bona M, Chen Y, Agustinus AS, Mazzagatti A, Duran MA, Deyell M, Bronder D, Hickling J, Hong C, Scipioni L, Tedeschi G, Martin S, Li J, Ruzgaitė A, Riaz N, Shah P, D'Souza EK, Brodtman DZ, Sidoli S, Diplas B, Jalan M, Lee NY, Ordureau A, Izar B, Laughney AM, Powell S, Gratton E, Santaguida S, Maciejowski J, Ly P, Jeitner TM, Bakhoum SF | Science (New York, N.Y.) | 39208110 | Science | 2024 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/39208110 |
| Biochemical, genomic, and epigenomic profiling of isolated cancer cell lines' micronuclei. | Agustinus AS, Bakhoum S | Methods in cell biology | 36064226 | Methods Cell Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36064226 |
| cGAS-STING and the deadly CIN: how chronic inflammation represents a therapeutic vulnerability in chromosomally unstable cancers. | Bakhoum SF | Trends in cancer | 35915014 | Trends Cancer | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/35915014 |
| Deep learning predicts chromosomal instability from histopathology images. | Xu Z, Verma A, Naveed U, Bakhoum SF, Khosravi P, Elemento O | iScience | 33997679 | iScience | 2021 May 21 | https://www.ncbi.nlm.nih.gov/pubmed/33997679 |
| Limited Environmental Serine and Glycine Confer Brain Metastasis Sensitivity to PHGDH Inhibition. | Ngo B, Kim E, Osorio-Vasquez V, Doll S, Bustraan S, Liang RJ, Luengo A, Davidson SM, Ali A, Ferraro GB, Fischer GM, Eskandari R, Kang DS, Ni J, Plasger A, Rajasekhar VK, Kastenhuber ER, Bacha S, Sriram RK, Stein BD, Bakhoum SF, Snuderl M, Cotzia P, Healey JH, Mainolfi N, Suri V, Friedman A, Manfredi M, Sabatini DM, Jones DR, Yu M, Zhao JJ, Jain RK, Keshari KR, Davies MA, Vander Heiden MG, Hernando E, Mann M, Cantley LC, Pacold ME | Cancer discovery | 32571778 | Cancer Discov | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32571778 |
| A new microscopy pipeline for studying the initial stages of nuclear and micronuclear rupture and repair. | Di Bona M, Bakhoum SF | Frontiers in cell and developmental biology | 39359718 | Front Cell Dev Biol | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39359718 |
| Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations. | Loh PR, Genovese G, Handsaker RE, Finucane HK, Reshef YA, Palamara PF, Birmann BM, Talkowski ME, Bakhoum SF, McCarroll SA, Price AL | Nature | 29995854 | Nature | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29995854 |
| Pervasive chromosomal instability and karyotype order in tumour evolution. | Watkins TBK, Lim EL, Petkovic M, Elizalde S, Birkbak NJ, Wilson GA, Moore DA, Grönroos E, Rowan A, Dewhurst SM, Demeulemeester J, Dentro SC, Horswell S, Au L, Haase K, Escudero M, Rosenthal R, Bakir MA, Xu H, Litchfield K, Lu WT, Mourikis TP, Dietzen M, Spain L, Cresswell GD, Biswas D, Lamy P, Nordentoft I, Harbst K, Castro-Giner F, Yates LR, Caramia F, Jaulin F, Vicier C, Tomlinson IPM, Brastianos PK, Cho RJ, Bastian BC, Dyrskjøt L, Jönsson GB, Savas P, Loi S, Campbell PJ, Andre F, Luscombe NM, Steeghs N, Tjan-Heijnen VCG, Szallasi Z, Turajlic S, Jamal-Hanjani M, Van Loo P, Bakhoum SF, Schwarz RF, McGranahan N, Swanton C | Nature | 32879494 | Nature | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32879494 |
| Breast Radiation Therapy Under COVID-19 Pandemic Resource Constraints-Approaches to Defer or Shorten Treatment From a Comprehensive Cancer Center in the United States. | Braunstein LZ, Gillespie EF, Hong L, Xu A, Bakhoum SF, Cuaron J, Mueller B, McCormick B, Cahlon O, Powell S, Khan AJ | Advances in radiation oncology | 32292842 | Adv Radiat Oncol | 2020 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/32292842 |
| Loss of polycomb repressive complex 1 activity and chromosomal instability drive uveal melanoma progression. | Bakhoum MF, Francis JH, Agustinus A, Earlie EM, Di Bona M, Abramson DH, Duran M, Masilionis I, Molina E, Shoushtari AN, Goldbaum MH, Mischel PS, Bakhoum SF, Laughney AM | Nature communications | 34518527 | Nat Commun | 2021 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/34518527 |
| The Evolution of STING Signaling and Its Involvement in Cancer. | Vashi N, Bakhoum SF | Trends in biochemical sciences | 33461879 | Trends Biochem Sci | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33461879 |
| Targeting chromosomal instability in patients with cancer. | Al-Rawi DH, Lettera E, Li J, DiBona M, Bakhoum SF | Nature reviews. Clinical oncology | 38992122 | Nat Rev Clin Oncol | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38992122 |
| Chromosomal instability as a source of genomic plasticity. | Al-Rawi DH, Bakhoum SF | Current opinion in genetics & development | 35526333 | Curr Opin Genet Dev | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35526333 |
| Cancer metastasis as a non-healing wound. | Deyell M, Garris CS, Laughney AM | British journal of cancer | 33731858 | Br J Cancer | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33731858 |
| Genomic characterization of metastatic patterns from prospective clinical sequencing of 25,000 patients. | Nguyen B, Fong C, Luthra A, Smith SA, DiNatale RG, Nandakumar S, Walch H, Chatila WK, Madupuri R, Kundra R, Bielski CM, Mastrogiacomo B, Donoghue MTA, Boire A, Chandarlapaty S, Ganesh K, Harding JJ, Iacobuzio-Donahue CA, Razavi P, Reznik E, Rudin CM, Zamarin D, Abida W, Abou-Alfa GK, Aghajanian C, Cercek A, Chi P, Feldman D, Ho AL, Iyer G, Janjigian YY, Morris M, Motzer RJ, O'Reilly EM, Postow MA, Raj NP, Riely GJ, Robson ME, Rosenberg JE, Safonov A, Shoushtari AN, Tap W, Teo MY, Varghese AM, Voss M, Yaeger R, Zauderer MG, Abu-Rustum N, Garcia-Aguilar J, Bochner B, Hakimi A, Jarnagin WR, Jones DR, Molena D, Morris L, Rios-Doria E, Russo P, Singer S, Strong VE, Chakravarty D, Ellenson LH, Gopalan A, Reis-Filho JS, Weigelt B, Ladanyi M, Gonen M, Shah SP, Massague J, Gao J, Zehir A, Berger MF, Solit DB, Bakhoum SF, Sanchez-Vega F, Schultz N | Cell | 35120664 | Cell | 2022 Feb 3 | https://www.ncbi.nlm.nih.gov/pubmed/35120664 |
| APOBEC3A drives STING-dependent metastasis. | Bakhoum SF | Nature cancer | 35121905 | Nat Cancer | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35121905 |
| Co-targeting TGF-β and PD-L1 with radiation therapy: The Goldilocks principle. | Bakhoum SF, Rudin CM | Cell reports. Medicine | 34622240 | Cell Rep Med | 2021 Sep 21 | https://www.ncbi.nlm.nih.gov/pubmed/34622240 |
| The clinical and molecular significance associated with STING signaling in breast cancer. | Parkes EE, Humphries MP, Gilmore E, Sidi FA, Bingham V, Phyu SM, Craig S, Graham C, Miller J, Griffin D, Salto-Tellez M, Madden SF, Kennedy RD, Bakhoum SF, McQuaid S, Buckley NE | NPJ breast cancer | 34172750 | NPJ Breast Cancer | 2021 Jun 25 | https://www.ncbi.nlm.nih.gov/pubmed/34172750 |
| Intratumoral TREX1 Induction Promotes Immune Evasion by Limiting Type I IFN. | Toufektchan E, Dananberg A, Striepen J, Hickling JH, Shim A, Chen Y, Nichols A, Duran Paez MA, Mohr L, Bakhoum SF, Maciejowski J | Cancer immunology research | 38408184 | Cancer Immunol Res | 2024 Jun 4 | https://www.ncbi.nlm.nih.gov/pubmed/38408184 |
| Loss of Pip4k2c confers liver-metastatic organotropism through insulin-dependent PI3K-AKT pathway activation. | Rogava M, Aprati TJ, Chi WY, Melms JC, Hug C, Davis SH, Earlie EM, Chung C, Deshmukh SK, Wu S, Sledge G, Tang S, Ho P, Amin AD, Caprio L, Gurjao C, Tagore S, Ngo B, Lee MJ, Zanetti G, Wang Y, Chen S, Ge W, Melo LMN, Allies G, Rösler J, Gibney GT, Schmitz OJ, Sykes M, Creusot RJ, Tüting T, Schadendorf D, Röcken M, Eigentler TK, Molotkov A, Mintz A, Bakhoum SF, Beyaz S, Cantley LC, Sorger PK, Meckelmann SW, Tasdogan A, Liu D, Laughney AM, Izar B | Nature cancer | 38286827 | Nat Cancer | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38286827 |
| Non-cell-autonomous cancer progression from chromosomal instability. | Li J, Hubisz MJ, Earlie EM, Duran MA, Hong C, Varela AA, Lettera E, Deyell M, Tavora B, Havel JJ, Phyu SM, Amin AD, Budre K, Kamiya E, Cavallo JA, Garris C, Powell S, Reis-Filho JS, Wen H, Bettigole S, Khan AJ, Izar B, Parkes EE, Laughney AM, Bakhoum SF | Nature | 37612508 | Nature | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37612508 |
| Ongoing genome doubling shapes evolvability and immunity in ovarian cancer. | McPherson A, Vázquez-García I, Myers MA, Al-Rawi DH, Zatzman M, Weiner AC, Freeman S, Mohibullah N, Satas G, Williams MJ, Ceglia N, Norkūnaitė D, Zhang AW, Li J, Lim JLP, Wu M, Choi S, Havasov E, Grewal D, Shi H, Kim M, Schwarz RF, Kaufmann T, Dinh KN, Uhlitz F, Tran J, Wu Y, Patel R, Ramakrishnan S, Kim D, Clarke J, Green H, Ali E, DiBona M, Varice N, Kundra R, Broach V, Gardner GJ, Roche KL, Sonoda Y, Zivanovic O, Kim SH, Grisham RN, Liu YL, Viale A, Rusk N, Lakhman Y, Ellenson LH, Tavaré S, Aparicio S, Chi DS, Aghajanian C, Abu-Rustum NR, Friedman CF, Zamarin D, Weigelt B, Bakhoum SF, Shah SP | Nature | 40670783 | Nature | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40670783 |
| Regenerative lineages and immune-mediated pruning in lung cancer metastasis. | Laughney AM, Hu J, Campbell NR, Bakhoum SF, Setty M, Lavallée VP, Xie Y, Masilionis I, Carr AJ, Kottapalli S, Allaj V, Mattar M, Rekhtman N, Xavier JB, Mazutis L, Poirier JT, Rudin CM, Pe'er D, Massagué J | Nature medicine | 32042191 | Nat Med | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32042191 |
| A CINful way to overcome addiction: how chromosomal instability enables cancer to overcome its oncogene addiction. | Bronder D, Bakhoum SF | EMBO molecular medicine | 32072755 | EMBO Mol Med | 2020 Mar 6 | https://www.ncbi.nlm.nih.gov/pubmed/32072755 |
| A Markov chain for numerical chromosomal instability in clonally expanding populations. | Elizalde S, Laughney AM, Bakhoum SF | PLoS computational biology | 30204765 | PLoS Comput Biol | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30204765 |
| The Multifaceted Role of Chromosomal Instability in Cancer and Its Microenvironment. | Bakhoum SF, Cantley LC | Cell | 30193109 | Cell | 2018 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/30193109 |
| Expanding the Role of STING in Cellular Homeostasis and Transformation. | Li J, Bakhoum SF | Trends in cancer | 30961826 | Trends Cancer | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30961826 |
| Metastasis and Immune Evasion from Extracellular cGAMP Hydrolysis. | Li J, Duran MA, Dhanota N, Chatila WK, Bettigole SE, Kwon J, Sriram RK, Humphries MP, Salto-Tellez M, James JA, Hanna MG, Melms JC, Vallabhaneni S, Litchfield K, Usaite I, Biswas D, Bareja R, Li HW, Martin ML, Dorsaint P, Cavallo JA, Li P, Pauli C, Gottesdiener L, DiPardo BJ, Hollmann TJ, Merghoub T, Wen HY, Reis-Filho JS, Riaz N, Su SM, Kalbasi A, Vasan N, Powell SN, Wolchok JD, Elemento O, Swanton C, Shoushtari AN, Parkes EE, Izar B, Bakhoum SF | Cancer discovery | 33372007 | Cancer Discov | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33372007 |
| Re-awakening Innate Immune Signaling in Cancer: The Development of Highly Potent ENPP1 Inhibitors. | Cogan D, Bakhoum SF | Cell chemical biology | 33217310 | Cell Chem Biol | 2020 Nov 19 | https://www.ncbi.nlm.nih.gov/pubmed/33217310 |
| Induction of APOBEC3 Exacerbates DNA Replication Stress and Chromosomal Instability in Early Breast and Lung Cancer Evolution. | Venkatesan S, Angelova M, Puttick C, Zhai H, Caswell DR, Lu WT, Dietzen M, Galanos P, Evangelou K, Bellelli R, Lim EL, Watkins TBK, Rowan A, Teixeira VH, Zhao Y, Chen H, Ngo B, Zalmas LP, Al Bakir M, Hobor S, Grönroos E, Pennycuick A, Nigro E, Campbell BB, Brown WL, Akarca AU, Marafioti T, Wu MY, Howell M, Boulton SJ, Bertoli C, Fenton TR, de Bruin RAM, Maya-Mendoza A, Santoni-Rugiu E, Hynds RE, Gorgoulis VG, Jamal-Hanjani M, McGranahan N, Harris RS, Janes SM, Bartkova J, Bakhoum SF, Bartek J, Kanu N, Swanton C, TRACERx Consortium | Cancer discovery | 33947663 | Cancer Discov | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33947663 |
| The Cytosolic DNA-Sensing cGAS-STING Pathway in Cancer. | Kwon J, Bakhoum SF | Cancer discovery | 31852718 | Cancer Discov | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31852718 |
| Dissecting the treatment-naive ecosystem of human melanoma brain metastasis. | Biermann J, Melms JC, Amin AD, Wang Y, Caprio LA, Karz A, Tagore S, Barrera I, Ibarra-Arellano MA, Andreatta M, Fullerton BT, Gretarsson KH, Sahu V, Mangipudy VS, Nguyen TTT, Nair A, Rogava M, Ho P, Koch PD, Banu M, Humala N, Mahajan A, Walsh ZH, Shah SB, Vaccaro DH, Caldwell B, Mu M, Wünnemann F, Chazotte M, Berhe S, Luoma AM, Driver J, Ingham M, Khan SA, Rapisuwon S, Slingluff CL Jr, Eigentler T, Röcken M, Carvajal R, Atkins MB, Davies MA, Agustinus A, Bakhoum SF, Azizi E, Siegelin M, Lu C, Carmona SJ, Hibshoosh H, Ribas A, Canoll P, Bruce JN, Bi WL, Agrawal P, Schapiro D, Hernando E, Macosko EZ, Chen F, Schwartz GK, Izar B | Cell | 35803246 | Cell | 2022 Jul 7 | https://www.ncbi.nlm.nih.gov/pubmed/35803246 |
| The pleiotropic roles of cGAS-STING signaling in the tumor microenvironment. | Li J, Bakhoum SF | Journal of molecular cell biology | 35325182 | J Mol Cell Biol | 2022 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/35325182 |
| Epigenetic dysregulation from chromosomal transit in micronuclei. | Agustinus AS, Al-Rawi D, Dameracharla B, Raviram R, Jones BSCL, Stransky S, Scipioni L, Luebeck J, Di Bona M, Norkunaite D, Myers RM, Duran M, Choi S, Weigelt B, Yomtoubian S, McPherson A, Toufektchan E, Keuper K, Mischel PS, Mittal V, Shah SP, Maciejowski J, Storchova Z, Gratton E, Ly P, Landau D, Bakhoum MF, Koche RP, Sidoli S, Bafna V, David Y, Bakhoum SF | Nature | 37286593 | Nature | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37286593 |
| APOBEC3 as a driver of genetic intratumor heterogeneity. | Venkatesan S, Angelova M, Bartkova J, Bakhoum SF, Bartek J, Kanu N, Swanton C | Molecular & cellular oncology | 38116246 | Mol Cell Oncol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38116246 |
| Chromosomal instability as a driver of cancer progression. | Chen X, Agustinus AS, Li J, DiBona M, Bakhoum SF | Nature reviews. Genetics | 39075192 | Nat Rev Genet | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39075192 |
| Easy and accurate protein structure prediction using ColabFold. | Kim G, Lee S, Levy Karin E, Kim H, Moriwaki Y, Ovchinnikov S, Steinegger M, Mirdita M | Nature protocols | 39402428 | Nat Protoc | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39402428 |
| Improved protein structure prediction using predicted interresidue orientations. | Yang J, Anishchenko I, Park H, Peng Z, Ovchinnikov S, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 31896580 | Proc Natl Acad Sci U S A | 2020 Jan 21 | https://www.ncbi.nlm.nih.gov/pubmed/31896580 |
| A structural biology community assessment of AlphaFold2 applications. | Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, Dunham AS, Burke D, Borkakoti N, Velankar S, Frost A, Basquin J, Lindorff-Larsen K, Bateman A, Kajava AV, Valencia A, Ovchinnikov S, Durairaj J, Ascher DB, Thornton JM, Davey NE, Stein A, Elofsson A, Croll TI, Beltrao P | Nature structural & molecular biology | 36344848 | Nat Struct Mol Biol | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36344848 |
| Accurate prediction of protein structures and interactions using a three-track neural network. | Baek M, DiMaio F, Anishchenko I, Dauparas J, Ovchinnikov S, Lee GR, Wang J, Cong Q, Kinch LN, Schaeffer RD, Millán C, Park H, Adams C, Glassman CR, DeGiovanni A, Pereira JH, Rodrigues AV, van Dijk AA, Ebrecht AC, Opperman DJ, Sagmeister T, Buhlheller C, Pavkov-Keller T, Rathinaswamy MK, Dalwadi U, Yip CK, Burke JE, Garcia KC, Grishin NV, Adams PD, Read RJ, Baker D | Science (New York, N.Y.) | 34282049 | Science | 2021 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/34282049 |
| Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex. | Wu X, Siggel M, Ovchinnikov S, Mi W, Svetlov V, Nudler E, Liao M, Hummer G, Rapoport TA | Science (New York, N.Y.) | 32327568 | Science | 2020 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/32327568 |
| Protein interaction networks revealed by proteome coevolution. | Cong Q, Anishchenko I, Ovchinnikov S, Baker D | Science (New York, N.Y.) | 31296772 | Science | 2019 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/31296772 |
| Computational design of soluble and functional membrane protein analogues. | Goverde CA, Pacesa M, Goldbach N, Dornfeld LJ, Balbi PEM, Georgeon S, Rosset S, Kapoor S, Choudhury J, Dauparas J, Schellhaas C, Kozlov S, Baker D, Ovchinnikov S, Vecchio AJ, Correia BE | Nature | 38898281 | Nature | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38898281 |
| Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation. | Cooper CJ, Zheng K, Rush KW, Johs A, Sanders BC, Pavlopoulos GA, Kyrpides NC, Podar M, Ovchinnikov S, Ragsdale SW, Parks JM | Communications biology | 32561885 | Commun Biol | 2020 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/32561885 |
| Structure-based protein design with deep learning. | Ovchinnikov S, Huang PS | Current opinion in chemical biology | 34547592 | Curr Opin Chem Biol | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34547592 |
| End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. | Petti S, Bhattacharya N, Rao R, Dauparas J, Thomas N, Zhou J, Rush AM, Koo P, Ovchinnikov S | Bioinformatics (Oxford, England) | 36355460 | Bioinformatics | 2023 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/36355460 |
| De novo design of a peptide modulator to reverse sodium channel dysfunction linked to cardiac arrhythmias and epilepsy. | Mahling R, Hegyi B, Cullen ER, Cho TM, Rodriques AR, Fossier L, Yehya M, Yang L, Chen BX, Katchman AN, Chakouri N, Ji R, Wan EY, Kushner J, Marx SO, Ovchinnikov S, Makinson CD, Bers DM, Ben-Johny M | Cell | 40829586 | Cell | 2025 Oct 30 | https://www.ncbi.nlm.nih.gov/pubmed/40829586 |
| AF2BIND: predicting small-molecule binding sites using the pair representation of AlphaFold2. | Gazizov A, Lian A, Goverde C, Mou J, Ovchinnikov S, Polizzi NF | Nature methods | 41814061 | Nat Methods | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41814061 |
| Cyclic peptide structure prediction and design using AlphaFold. | Rettie SA, Campbell KV, Bera AK, Kang A, Kozlov S, De La Cruz J, Adebomi V, Zhou G, DiMaio F, Ovchinnikov S, Bhardwaj G | bioRxiv : the preprint server for biology | 36865323 | bioRxiv | 2023 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/36865323 |
| Protein sequence design by conformational landscape optimization. | Norn C, Wicky BIM, Juergens D, Liu S, Kim D, Tischer D, Koepnick B, Anishchenko I, Foldit Players, Baker D, Ovchinnikov S | Proceedings of the National Academy of Sciences of the United States of America | 33712545 | Proc Natl Acad Sci U S A | 2021 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/33712545 |
| Scalable protein design using optimization in a relaxed sequence space. | Frank C, Khoshouei A, Fuβ L, Schiwietz D, Putz D, Weber L, Zhao Z, Hattori M, Feng S, de Stigter Y, Ovchinnikov S, Dietz H | Science (New York, N.Y.) | 39446959 | Science | 2024 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/39446959 |
| Protein language models learn evolutionary statistics of interacting sequence motifs. | Zhang Z, Wayment-Steele HK, Brixi G, Wang H, Kern D, Ovchinnikov S | Proceedings of the National Academy of Sciences of the United States of America | 39467119 | Proc Natl Acad Sci U S A | 2024 Nov 5 | https://www.ncbi.nlm.nih.gov/pubmed/39467119 |
| State-of-the-Art Estimation of Protein Model Accuracy Using AlphaFold. | Roney JP, Ovchinnikov S | Physical review letters | 36563190 | Phys Rev Lett | 2022 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/36563190 |
| Validation of de novo designed water-soluble and transmembrane β-barrels by in silico folding and melting. | Hermosilla AM, Berner C, Ovchinnikov S, Vorobieva AA | Protein science : a publication of the Protein Society | 38864690 | Protein Sci | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38864690 |
| One-shot design of functional protein binders with BindCraft. | Pacesa M, Nickel L, Schellhaas C, Schmidt J, Pyatova E, Kissling L, Barendse P, Choudhury J, Kapoor S, Alcaraz-Serna A, Cho Y, Ghamary KH, Vinué L, Yachnin BJ, Wollacott AM, Buckley S, Westphal AH, Lindhoud S, Georgeon S, Goverde CA, Hatzopoulos GN, Gönczy P, Muller YD, Schwank G, Swarts DC, Vecchio AJ, Schneider BL, Ovchinnikov S, Correia BE | Nature | 40866699 | Nature | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40866699 |
| De novo design of small beta barrel proteins. | Kim DE, Jensen DR, Feldman D, Tischer D, Saleem A, Chow CM, Li X, Carter L, Milles L, Nguyen H, Kang A, Bera AK, Peterson FC, Volkman BF, Ovchinnikov S, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 36897987 | Proc Natl Acad Sci U S A | 2023 Mar 14 | https://www.ncbi.nlm.nih.gov/pubmed/36897987 |
| Scaffolding protein functional sites using deep learning. | Wang J, Lisanza S, Juergens D, Tischer D, Watson JL, Castro KM, Ragotte R, Saragovi A, Milles LF, Baek M, Anishchenko I, Yang W, Hicks DR, Expòsit M, Schlichthaerle T, Chun JH, Dauparas J, Bennett N, Wicky BIM, Muenks A, DiMaio F, Correia B, Ovchinnikov S, Baker D | Science (New York, N.Y.) | 35862514 | Science | 2022 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/35862514 |
| Stable de novo protein design via joint conformational landscape and sequence optimization. | Cho Y, Dauparas J, Tsuboyama K, Rocklin GJ, Ovchinnikov S | Nature communications | 41444215 | Nat Commun | 2025 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/41444215 |
| A demonstration of unsupervised machine learning in species delimitation. | Derkarabetian S, Castillo S, Koo PK, Ovchinnikov S, Hedin M | Molecular phylogenetics and evolution | 31323334 | Mol Phylogenet Evol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31323334 |
| ColabFold: making protein folding accessible to all. | Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M | Nature methods | 35637307 | Nat Methods | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35637307 |
| Unraveling the functional dark matter through global metagenomics. | Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E, Novel Metagenome Protein Families Consortium, Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC | Nature | 37821698 | Nature | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37821698 |
| De novo protein design by deep network hallucination. | Anishchenko I, Pellock SJ, Chidyausiku TM, Ramelot TA, Ovchinnikov S, Hao J, Bafna K, Norn C, Kang A, Bera AK, DiMaio F, Carter L, Chow CM, Montelione GT, Baker D | Nature | 34853475 | Nature | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34853475 |
| Genomic language model predicts protein co-regulation and function. | Hwang Y, Cornman AL, Kellogg EH, Ovchinnikov S, Girguis PR | Nature communications | 38570504 | Nat Commun | 2024 Apr 3 | https://www.ncbi.nlm.nih.gov/pubmed/38570504 |
| Cyclic peptide structure prediction and design using AlphaFold2. | Rettie SA, Campbell KV, Bera AK, Kang A, Kozlov S, Bueso YF, De La Cruz J, Ahlrichs M, Cheng S, Gerben SR, Lamb M, Murray A, Adebomi V, Zhou G, DiMaio F, Ovchinnikov S, Bhardwaj G | Nature communications | 40399308 | Nat Commun | 2025 May 21 | https://www.ncbi.nlm.nih.gov/pubmed/40399308 |
| Imaging CAR T Cell Trafficking with eDHFR as a PET Reporter Gene. | Sellmyer MA, Richman SA, Lohith K, Hou C, Weng CC, Mach RH, O'Connor RS, Milone MC, Farwell MD | Molecular therapy : the journal of the American Society of Gene Therapy | 31668558 | Mol Ther | 2020 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/31668558 |
| A Chemical Approach for Programmable Protein Outputs Based on Engineered Cell Interactions. | Jacome DA, Northrup JD, Ruff AJ, Reilly SW, Lee IK, Blizard GS, Sellmyer MA | ACS chemical biology | 33351606 | ACS Chem Biol | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/33351606 |
| Regulation of eDHFR-tagged proteins with trimethoprim PROTACs. | Etersque JM, Lee IK, Sharma N, Xu K, Ruff A, Northrup JD, Sarkar S, Nguyen T, Lauman R, Burslem GM, Sellmyer MA | Nature communications | 37923771 | Nat Commun | 2023 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/37923771 |
| Visualizing Bacterial Infections With Novel Targeted Molecular Imaging Approaches. | Chen X, Gallagher F, Sellmyer MA, Ordonez AA, Kjaer A, Ohliger M, Wilson DM, Jain SK | The Journal of infectious diseases | 37788506 | J Infect Dis | 2023 Oct 3 | https://www.ncbi.nlm.nih.gov/pubmed/37788506 |
| Photocontrolled trimethoprim PROTACs targeting the eDHFR protein tag. | Sharma N, Sarkar S, Ko T, Edwards KJ, Pham JM, Nguyen T, Gong AZ, Flores J, Trauner D, Sellmyer MA | Nature communications | 41453904 | Nat Commun | 2025 Dec 27 | https://www.ncbi.nlm.nih.gov/pubmed/41453904 |
| A genetically encoded protein tag for control and quantitative imaging of CAR T cell therapy. | Lee IK, Sharma N, Noguera-Ortega E, Liousia M, Baroja ML, Etersque JM, Pham J, Sarkar S, Carreno BM, Linette GP, Puré E, Albelda SM, Sellmyer MA | Molecular therapy : the journal of the American Society of Gene Therapy | 37919903 | Mol Ther | 2023 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/37919903 |
| Monitoring mRNA vaccine antigen expression in vivo using PET/CT. | Blizard GS, Dwivedi G, Pan YG, Hou C, Etersque JM, Said H, Chevrier A, Lavertu M, Ni H, Davis B, Tam Y, Cao Q, Mach RH, Weissman D, Alameh MG, Sellmyer MA | Nature communications | 40044669 | Nat Commun | 2025 Mar 6 | https://www.ncbi.nlm.nih.gov/pubmed/40044669 |
| Monitoring Therapeutic Response to Anti-FAP CAR T Cells Using [18F]AlF-FAPI-74. | Lee IK, Noguera-Ortega E, Xiao Z, Todd L, Scholler J, Song D, Liousia M, Lohith K, Xu K, Edwards KJ, Farwell MD, June CH, Albelda SM, Puré E, Sellmyer MA | Clinical cancer research : an official journal of the American Association for Cancer Research | 35972732 | Clin Cancer Res | 2022 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/35972732 |
| Imaging sensitive and drug-resistant bacterial infection with [11C]-trimethoprim. | Lee IK, Jacome DA, Cho JK, Tu V, Young AJ, Dominguez T, Northrup JD, Etersque JM, Lee HS, Ruff A, Aklilu O, Bittinger K, Glaser LJ, Dorgan D, Hadjiliadis D, Kohli RM, Mach RH, Mankoff DA, Doot RK, Sellmyer MA | The Journal of clinical investigation | 36106638 | J Clin Invest | 2022 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/36106638 |
| Influence of Subcellular Localization on the Cytotoxicity of Targeted α-Therapy. | Lee H, Sarkar S, Xu K, Martorano P, Pham J, Park PSU, King AP, Lee HS, Mankoff DA, Pryma DA, Sellmyer MA | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 41469154 | J Nucl Med | 2026 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/41469154 |
| First-in-Human Biodistribution and Dosimetry of [(11)C]Trimethoprim. | Young AJ, Doot RK, Cho JK, Pham JM, Ordonez AA, Del Castillo AF, Dominguez TL, Dugyala S, Schubert EK, Lee H, Pantel AR, Mach RH, Mankoff DA, Sellmyer MA | Molecular imaging and biology | 41275068 | Mol Imaging Biol | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41275068 |
| Molecular imaging of bacterial infections: Overcoming the barriers to clinical translation. | Ordonez AA, Sellmyer MA, Gowrishankar G, Ruiz-Bedoya CA, Tucker EW, Palestro CJ, Hammoud DA, Jain SK | Science translational medicine | 31484790 | Sci Transl Med | 2019 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/31484790 |
| (18)F-Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography Following Chimeric Antigen Receptor T-cell Therapy in Large B-cell Lymphoma. | Ruff A, Ballard HJ, Pantel AR, Namoglu EC, Hughes ME, Nasta SD, Chong EA, Bagg A, Ruella M, Farwell MD, Svoboda J, Sellmyer MA | Molecular imaging and biology | 34231105 | Mol Imaging Biol | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34231105 |
| Building the Bridge: Molecular Imaging Biomarkers for 21(st) Century Cancer Therapies. | Sellmyer MA, Lee IK, Mankoff DA | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 34446450 | J Nucl Med | 2021 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/34446450 |
| Cell-Based Ligand Discovery for the ENL YEATS Domain. | Asiaban JN, Milosevich N, Chen E, Bishop TR, Wang J, Zhang Y, Ackerman CJ, Hampton EN, Young TS, Hull MV, Cravatt BF, Erb MA | ACS chemical biology | 32176478 | ACS Chem Biol | 2020 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/32176478 |
| Chemical Inhibition of ENL/AF9 YEATS Domains in Acute Leukemia. | Garnar-Wortzel L, Bishop TR, Kitamura S, Milosevich N, Asiaban JN, Zhang X, Zheng Q, Chen E, Ramos AR, Ackerman CJ, Hampton EN, Chatterjee AK, Young TS, Hull MV, Sharpless KB, Cravatt BF, Wolan DW, Erb MA | ACS central science | 34079898 | ACS Cent Sci | 2021 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/34079898 |
| Acetyl-CoA biosynthesis drives resistance to histone acetyltransferase inhibition. | Bishop TR, Subramanian C, Bilotta EM, Garnar-Wortzel L, Ramos AR, Zhang Y, Asiaban JN, Ott CJ, Rock CO, Erb MA | Nature chemical biology | 37127754 | Nat Chem Biol | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37127754 |
| SuFEx-based chemical diversification for the systematic discovery of CRBN molecular glues. | Carter TR, Milosevich N, Dada L, Shaum JB, Barry Sharpless K, Kitamura S, Erb MA | Bioorganic & medicinal chemistry | 38608634 | Bioorg Med Chem | 2024 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/38608634 |
| A chemical-genetic interaction between PAF1 and ENL/AF9 YEATS inhibition. | Barta PA, Garnar-Wortzel L, Bishop TR, Hayward RE, Hargis LM, Shaum JB, Kwok HS, Liau BB, Cravatt BF, Erb MA | RSC chemical biology | 41142648 | RSC Chem Biol | 2026 Jan 14 | https://www.ncbi.nlm.nih.gov/pubmed/41142648 |
| Collateral lethality between HDAC1 and HDAC2 exploits cancer-specific NuRD complex vulnerabilities. | Zhang Y, Remillard D, Onubogu U, Karakyriakou B, Asiaban JN, Ramos AR, Bowland K, Bishop TR, Barta PA, Nance S, Durbin AD, Ott CJ, Janiszewska M, Cravatt BF, Erb MA | Nature structural & molecular biology | 37488358 | Nat Struct Mol Biol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37488358 |
| Pharmacological Modulation of Transcriptional Coregulators in Cancer. | Bishop TR, Zhang Y, Erb MA | Trends in pharmacological sciences | 31078321 | Trends Pharmacol Sci | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31078321 |
| Small-molecule tools for YEATS domain proteins. | Erb MA | Current opinion in chemical biology | 37924571 | Curr Opin Chem Biol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37924571 |
| Augmented Acyl-CoA Biosynthesis Promotes Resistance to TEAD Palmitoylation Site Inhibition. | Nutsch K, Trujillo MN, Song L, Erb MA, Chen JJ, Galligan JJ, Bollong MJ | ACS chemical biology | 40179049 | ACS Chem Biol | 2025 Apr 18 | https://www.ncbi.nlm.nih.gov/pubmed/40179049 |
| High-throughput ligand diversification to discover chemical inducers of proximity. | Shaum JB, Muñoz I Ordoño M, Steen EA, Wenge DV, Cheong H, Janowski J, Hunkeler M, Bilotta EM, Rutter ZJ, Barta PA, Thornhill AM, Milosevich N, Hargis LM, Bishop TR, Carter TR, da Camara B, Hinterndorfer M, Dada L, He WJ, Offensperger F, Furihata H, Schweber SR, Hatton C, Wen Y, Cravatt BF, Engle KM, Donovan KA, Melillo B, Kitamura S, Ciulli A, Armstrong SA, Fischer ES, Winter GE, Erb MA | Nature chemical biology | 41699285 | Nat Chem Biol | 2026 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/41699285 |
| Redirecting the pioneering function of FOXA1 with covalent small molecules. | Won SJ, Zhang Y, Reinhardt CJ, Hargis LM, MacRae NS, DeMeester KE, Njomen E, Remsberg JR, Melillo B, Cravatt BF, Erb MA | Molecular cell | 39413792 | Mol Cell | 2024 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/39413792 |
| Quiescent Cells Actively Replenish CENP-A Nucleosomes to Maintain Centromere Identity and Proliferative Potential. | Swartz SZ, McKay LS, Su KC, Bury L, Padeganeh A, Maddox PS, Knouse KA, Cheeseman IM | Developmental cell | 31422918 | Dev Cell | 2019 Oct 7 | https://www.ncbi.nlm.nih.gov/pubmed/31422918 |
| Genome-scale CRISPR screening in a single mouse liver. | Keys HR, Knouse KA | Cell genomics | 36643909 | Cell Genom | 2022 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/36643909 |
| Proteome plasticity in response to persistent environmental change. | Domnauer M, Zheng F, Li L, Zhang Y, Chang CE, Unruh JR, Conkright-Fincham J, McCroskey S, Florens L, Zhang Y, Seidel C, Fong B, Schilling B, Sharma R, Ramanathan A, Si K, Zhou C | Molecular cell | 34293321 | Mol Cell | 2021 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/34293321 |
| Nascent mitochondrial proteins initiate the localized condensation of cytosolic protein aggregates on the mitochondrial surface. | Liu Q, Fong B, Yoo S, Unruh JR, Guo F, Yu Z, Chen J, Si K, Li R, Zhou C | Proceedings of the National Academy of Sciences of the United States of America | 37494397 | Proc Natl Acad Sci U S A | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37494397 |
| Tom70-based transcriptional regulation of mitochondrial biogenesis and aging. | Liu Q, Chang CE, Wooldredge AC, Fong B, Kennedy BK, Zhou C | eLife | 35234609 | Elife | 2022 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/35234609 |
| The yeast replicative aging model. | He C, Zhou C, Kennedy BK | Biochimica et biophysica acta. Molecular basis of disease | 29524633 | Biochim Biophys Acta Mol Basis Dis | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29524633 |
| Metabolic environment-driven remodeling of mitochondrial ribosomes regulates translation and biogenesis. | Zheng F, Yu Z, Zhuang J, Vannur L, Nickols W, Wang Y, Li L, Tan SJO, Yoo S, Cheng Y, Zhou C | Molecular cell | 41202813 | Mol Cell | 2025 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/41202813 |
| Mitochondria-lysosome coupling contributes to lysosome acidification and aging. | Liu Q, Yoo S, Zhang ZA, Li L, Su H, Vannur L, Wooldredge AC, Hughes JB, Desprez PY, Hao N, Lithgow G, Andersen JK, Hansen M, Campisi J, Zhou C | Molecular cell | 42214330 | Mol Cell | 2026 Jun 18 | https://www.ncbi.nlm.nih.gov/pubmed/42214330 |
| Synthetic Biological Circuits within an Orthogonal Central Dogma. | Costello A, Badran AH | Trends in biotechnology | 32586633 | Trends Biotechnol | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32586633 |
| Natural and engineered precision antibiotics in the context of resistance. | Johnston CW, Badran AH | Current opinion in chemical biology | 35660248 | Curr Opin Chem Biol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35660248 |
| Orthogonal translation enables heterologous ribosome engineering in E. coli. | Kolber NS, Fattal R, Bratulic S, Carver GD, Badran AH | Nature communications | 33500394 | Nat Commun | 2021 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/33500394 |
| Modern methods for laboratory diversification of biomolecules. | Bratulic S, Badran AH | Current opinion in chemical biology | 29096324 | Curr Opin Chem Biol | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29096324 |
| Bacterial translation machinery for deliberate mistranslation of the genetic code. | Vargas-Rodriguez O, Badran AH, Hoffman KS, Chen M, Crnković A, Ding Y, Krieger JR, Westhof E, Söll D, Melnikov S | Proceedings of the National Academy of Sciences of the United States of America | 34413202 | Proc Natl Acad Sci U S A | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/34413202 |
| Directed evolution of rRNA improves translation kinetics and recombinant protein yield. | Liu F, Bratulić S, Costello A, Miettinen TP, Badran AH | Nature communications | 34561441 | Nat Commun | 2021 Sep 24 | https://www.ncbi.nlm.nih.gov/pubmed/34561441 |
| Multiplex suppression of four quadruplet codons via tRNA directed evolution. | DeBenedictis EA, Carver GD, Chung CZ, Söll D, Badran AH | Nature communications | 34588441 | Nat Commun | 2021 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/34588441 |
| Efficient genetic code expansion without host genome modifications. | Costello A, Peterson AA, Lanster DL, Li Z, Carver GD, Badran AH | Nature biotechnology | 39261591 | Nat Biotechnol | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39261591 |
| A Deep Learning Approach to Antibiotic Discovery. | Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, Church GM, Brown ED, Jaakkola TS, Barzilay R, Collins JJ | Cell | 32084340 | Cell | 2020 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/32084340 |
| Clinically relevant mutations in core metabolic genes confer antibiotic resistance. | Lopatkin AJ, Bening SC, Manson AL, Stokes JM, Kohanski MA, Badran AH, Earl AM, Cheney NJ, Yang JH, Collins JJ | Science (New York, N.Y.) | 33602825 | Science | 2021 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/33602825 |
| Continuous bioactivity-dependent evolution of an antibiotic biosynthetic pathway. | Johnston CW, Badran AH, Collins JJ | Nature communications | 32826900 | Nat Commun | 2020 Aug 21 | https://www.ncbi.nlm.nih.gov/pubmed/32826900 |
| Principles of Chromosome Architecture Revealed by Hi-C. | Eagen KP | Trends in biochemical sciences | 29685368 | Trends Biochem Sci | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29685368 |
| Contact Mapping to Unravel Chromosome Folding. | Ge T, Rosencrance CD, Eagen KP | Trends in biochemical sciences | 31677956 | Trends Biochem Sci | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31677956 |
| Supercharging BRD4 with NUT in carcinoma. | Eagen KP, French CA | Oncogene | 33452461 | Oncogene | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33452461 |
| The BRD4-NUT Fusion Alone Drives Malignant Transformation of NUT Carcinoma. | Durall RT, Huang J, Wojenski L, Huang Y, Gokhale PC, Leeper BA, Nash JO, Ballester PL, Davidson S, Shlien A, Sotirakis E, Bertaux F, Dubus V, Luo J, Wu CJ, Keskin DB, Eagen KP, Shapiro GI, French CA | Cancer research | 37819236 | Cancer Res | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37819236 |
| Chromatin Hyperacetylation Impacts Chromosome Folding by Forming a Nuclear Subcompartment. | Rosencrance CD, Ammouri HN, Yu Q, Ge T, Rendleman EJ, Marshall SA, Eagen KP | Molecular cell | 32243828 | Mol Cell | 2020 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/32243828 |
| UBR7 acts as a histone chaperone for post-nucleosomal histone H3. | Hogan AK, Sathyan KM, Willis AB, Khurana S, Srivastava S, Zasadzińska E, Lee AS, Bailey AO, Gaynes MN, Huang J, Bodner J, Rosencrance CD, Wong KA, Morgan MA, Eagen KP, Shilatifard A, Foltz DR | The EMBO journal | 34786730 | EMBO J | 2021 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/34786730 |
| BET proteins loop and compartmentalize the 3D genome. | Eagen KP | Nature genetics | 35410382 | Nat Genet | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35410382 |
| EZH2 Cooperates with BRD4-NUT to Drive NUT Carcinoma Growth by Silencing Key Tumor Suppressor Genes. | Huang Y, Durall RT, Luong NM, Hertzler HJ, Huang J, Gokhale PC, Leeper BA, Persky NS, Root DE, Anekal PV, Montero Llopis PDLM, David CN, Kutok JL, Raimondi A, Saluja K, Luo J, Zahnow CA, Adane B, Stegmaier K, Hawkins CE, Ponne C, Le Q, Shapiro GI, Lemieux ME, Eagen KP, French CA | Cancer research | 37747726 | Cancer Res | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37747726 |
| Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation. | Fang C, Wang Z, Han C, Safgren SL, Helmin KA, Adelman ER, Serafin V, Basso G, Eagen KP, Gaspar-Maia A, Figueroa ME, Singer BD, Ratan A, Ntziachristos P, Zang C | Genome biology | 32933554 | Genome Biol | 2020 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/32933554 |
| EZH2 synergizes with BRD4-NUT to drive NUT carcinoma growth through silencing of key tumor suppressor genes. | Huang Y, Durall RT, Luong NM, Hertzler HJ, Huang J, Gokhale PC, Leeper BA, Persky NS, Root DE, Anekal PV, Montero Llopis PDLM, David CN, Kutok JL, Raimondi A, Saluja K, Luo J, Zahnow CA, Adane B, Stegmaier K, Hawkins CE, Ponne C, Le Q, Shapiro GI, Lemieux ME, Eagen KP, French CA | bioRxiv : the preprint server for biology | 37645799 | bioRxiv | 2023 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/37645799 |
| Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2. | Stickels RR, Murray E, Kumar P, Li J, Marshall JL, Di Bella DJ, Arlotta P, Macosko EZ, Chen F | Nature biotechnology | 33288904 | Nat Biotechnol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33288904 |
| Efficient, continuous mutagenesis in human cells using a pseudo-random DNA editor. | Chen H, Liu S, Padula S, Lesman D, Griswold K, Lin A, Zhao T, Marshall JL, Chen F | Nature biotechnology | 31844291 | Nat Biotechnol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31844291 |
| Dissecting mammalian spermatogenesis using spatial transcriptomics. | Chen H, Murray E, Sinha A, Laumas A, Li J, Lesman D, Nie X, Hotaling J, Guo J, Cairns BR, Macosko EZ, Cheng CY, Chen F | Cell reports | 34731600 | Cell Rep | 2021 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34731600 |
| Programmable eukaryotic protein synthesis with RNA sensors by harnessing ADAR. | Jiang K, Koob J, Chen XD, Krajeski RN, Zhang Y, Volf V, Zhou W, Sgrizzi SR, Villiger L, Gootenberg JS, Chen F, Abudayyeh OO | Nature biotechnology | 36302988 | Nat Biotechnol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36302988 |
| Compressed sensing for highly efficient imaging transcriptomics. | Cleary B, Simonton B, Bezney J, Murray E, Alam S, Sinha A, Habibi E, Marshall J, Lander ES, Chen F, Regev A | Nature biotechnology | 33859401 | Nat Biotechnol | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33859401 |
| In situ genome sequencing resolves DNA sequence and structure in intact biological samples. | Payne AC, Chiang ZD, Reginato PL, Mangiameli SM, Murray EM, Yao CC, Markoulaki S, Earl AS, Labade AS, Jaenisch R, Church GM, Boyden ES, Buenrostro JD, Chen F | Science (New York, N.Y.) | 33384301 | Science | 2021 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/33384301 |
| Robust decomposition of cell type mixtures in spatial transcriptomics. | Cable DM, Murray E, Zou LS, Goeva A, Macosko EZ, Chen F, Irizarry RA | Nature biotechnology | 33603203 | Nat Biotechnol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33603203 |
| Detection of allele-specific expression in spatial transcriptomics with spASE. | Zou LS, Cable DM, Barrera-Lopez IA, Zhao T, Murray E, Aryee MJ, Chen F, Irizarry RA | Genome biology | 38978101 | Genome Biol | 2024 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/38978101 |
| Generative Design of Cell Type-Specific RNA Splicing Elements for Programmable Gene Regulation. | Chen XD, Jim M, Vallurupalli M, Cao K, Torres AN, Leong JW, Zhang Y, Wollensak D, Gong Q, Sun J, Borji M, Schor G, Mrowka S, Hu M, Laumas A, Roth JA, Golub T, Chen F | bioRxiv : the preprint server for biology | 41279721 | bioRxiv | 2025 Nov 5 | https://www.ncbi.nlm.nih.gov/pubmed/41279721 |
| HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes. | Marshall JL, Doughty BR, Subramanian V, Guckelberger P, Wang Q, Chen LM, Rodriques SG, Zhang K, Fulco CP, Nasser J, Grinkevich EJ, Noel T, Mangiameli S, Bergman DT, Greka A, Lander ES, Chen F, Engreitz JM | Proceedings of the National Academy of Sciences of the United States of America | 33376219 | Proc Natl Acad Sci U S A | 2020 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/33376219 |
| Molecular logic of cellular diversification in the mouse cerebral cortex. | Di Bella DJ, Habibi E, Stickels RR, Scalia G, Brown J, Yadollahpour P, Yang SM, Abbate C, Biancalani T, Macosko EZ, Chen F, Regev A, Arlotta P | Nature | 34163074 | Nature | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34163074 |
| Helicase-assisted continuous editing for programmable mutagenesis of endogenous genomes. | Chen XD, Chen Z, Wythes G, Zhang Y, Orr BC, Sun G, Chao YK, Navarro Torres A, Thao K, Vallurupalli M, Sun J, Borji M, Tkacik E, Chen H, Bernstein BE, Chen F | Science (New York, N.Y.) | 39388570 | Science | 2024 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/39388570 |
| Scalable spatial transcriptomics through computational array reconstruction. | Hu C, Borji M, Marrero GJ, Kumar V, Weir JA, Kammula SV, Macosko EZ, Chen F | Nature biotechnology | 40181168 | Nat Biotechnol | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40181168 |
| Spatial genomics enables multi-modal study of clonal heterogeneity in tissues. | Zhao T, Chiang ZD, Morriss JW, LaFave LM, Murray EM, Del Priore I, Meli K, Lareau CA, Nadaf NM, Li J, Earl AS, Macosko EZ, Jacks T, Buenrostro JD, Chen F | Nature | 34912115 | Nature | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34912115 |
| Cell type-specific inference of differential expression in spatial transcriptomics. | Cable DM, Murray E, Shanmugam V, Zhang S, Zou LS, Diao M, Chen H, Macosko EZ, Irizarry RA, Chen F | Nature methods | 36050488 | Nat Methods | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36050488 |
| Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis. | Sampath Kumar A, Tian L, Bolondi A, Hernández AA, Stickels R, Kretzmer H, Murray E, Wittler L, Walther M, Barakat G, Haut L, Elkabetz Y, Macosko EZ, Guignard L, Chen F, Meissner A | Nature genetics | 37414952 | Nat Genet | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37414952 |
| Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumor growth and metastasis. | Jones MG, Sun D, Min KHJ, Colgan WN, Tian L, Weir JA, Chen VZ, Koblan LW, Yost KE, Mathey-Andrews N, Russell AJC, Stickels RR, Balderrama KS, Rideout WM 3rd, Chang HY, Jacks T, Chen F, Weissman JS, Yosef N, Yang D | bioRxiv : the preprint server for biology | 39484491 | bioRxiv | 2024 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/39484491 |
| Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution. | Rodriques SG, Stickels RR, Goeva A, Martin CA, Murray E, Vanderburg CR, Welch J, Chen LM, Chen F, Macosko EZ | Science (New York, N.Y.) | 30923225 | Science | 2019 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/30923225 |
| RNA timestamps identify the age of single molecules in RNA sequencing. | Rodriques SG, Chen LM, Liu S, Zhong ED, Scherrer JR, Boyden ES, Chen F | Nature biotechnology | 33077959 | Nat Biotechnol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33077959 |
| Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response. | Liu S, Iorgulescu JB, Li S, Borji M, Barrera-Lopez IA, Shanmugam V, Lyu H, Morriss JW, Garcia ZN, Murray E, Reardon DA, Yoon CH, Braun DA, Livak KJ, Wu CJ, Chen F | Immunity | 36223726 | Immunity | 2022 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/36223726 |
| Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. | Mangiameli SM, Chen H, Earl AS, Dobkin JA, Lesman D, Buenrostro JD, Chen F | Nature methods | 37106232 | Nat Methods | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37106232 |
| Improving fine-mapping by modeling infinitesimal effects. | Cui R, Elzur RA, Kanai M, Ulirsch JC, Weissbrod O, Daly MJ, Neale BM, Fan Z, Finucane HK | Nature genetics | 38036779 | Nat Genet | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38036779 |
| Leveraging supervised learning for functionally informed fine-mapping of cis-eQTLs identifies an additional 20,913 putative causal eQTLs. | Wang QS, Kelley DR, Ulirsch J, Kanai M, Sadhuka S, Cui R, Albors C, Cheng N, Okada Y, Biobank Japan Project, Aguet F, Ardlie KG, MacArthur DG, Finucane HK | Nature communications | 34099641 | Nat Commun | 2021 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/34099641 |
| Misuse of the term 'trans-ethnic' in genomics research. | Kamariza M, Crawford L, Jones D, Finucane H | Nature genetics | 34741159 | Nat Genet | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34741159 |
| Reconciling S-LDSC and LDAK functional enrichment estimates. | Gazal S, Marquez-Luna C, Finucane HK, Price AL | Nature genetics | 31285579 | Nat Genet | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31285579 |
| Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases. | Weeks EM, Ulirsch JC, Cheng NY, Trippe BL, Fine RS, Miao J, Patwardhan TA, Kanai M, Nasser J, Fulco CP, Tashman KC, Aguet F, Li T, Ordovas-Montanes J, Smillie CS, Biton M, Shalek AK, Ananthakrishnan AN, Xavier RJ, Regev A, Gupta RM, Lage K, Ardlie KG, Hirschhorn JN, Lander ES, Engreitz JM, Finucane HK | Nature genetics | 37443254 | Nat Genet | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37443254 |
| Genome-wide pleiotropy analysis of coronary artery disease and pneumonia identifies shared immune pathways. | Yu Z, Zekavat SM, Haidermota S, Bernardo R, MacDonald BT, Libby P, Finucane HK, Natarajan P | Science advances | 35452290 | Sci Adv | 2022 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/35452290 |
| Meta-analysis fine-mapping is often miscalibrated at single-variant resolution. | Kanai M, Elzur R, Zhou W, Global Biobank Meta-analysis Initiative, Daly MJ, Finucane HK | Cell genomics | 36643910 | Cell Genom | 2022 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/36643910 |
| ASXL1 truncating variants in BOS and myeloid leukemia drive shared disruption of Wnt-signaling pathways but have differential isoform usage of RUNX3. | Lin I, Awamleh Z, Sinvhal M, Wan A, Bondhus L, Wei A, Russell BE, Weksberg R, Arboleda VA | BMC medical genomics | 39614348 | BMC Med Genomics | 2024 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/39614348 |
| Metabolic reprogramming and epigenetic changes of vital organs in SARS-CoV-2-induced systemic toxicity. | Li S, Ma F, Yokota T, Garcia G Jr, Palermo A, Wang Y, Farrell C, Wang YC, Wu R, Zhou Z, Pan C, Morselli M, Teitell MA, Ryazantsev S, Fishbein GA, Hoeve JT, Arboleda VA, Bloom J, Dillon B, Pellegrini M, Lusis AJ, Graeber TG, Arumugaswami V, Deb A | JCI insight | 33284134 | JCI Insight | 2021 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/33284134 |
| Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing. | Bloom JS, Sathe L, Munugala C, Jones EM, Gasperini M, Lubock NB, Yarza F, Thompson EM, Kovary KM, Park J, Marquette D, Kay S, Lucas M, Love T, Booeshaghi AS, Brandenberg OF, Guo L, Boocock J, Hochman M, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, Oland G, Choe BJ, Chandrasekaran S, Hilt EE, Butte MJ, Damoiseaux R, Kravit C, Cooper AR, Yin Y, Pachter L, Garner OB, Flint J, Eskin E, Luo C, Kosuri S, Kruglyak L, Arboleda VA | medRxiv : the preprint server for health sciences | 32909008 | medRxiv | 2021 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/32909008 |
| Multiomics of Bohring-Opitz syndrome truncating ASXL1 mutations identify canonical and noncanonical Wnt signaling dysregulation. | Lin I, Wei A, Awamleh Z, Singh M, Ning A, Herrera A, REACH Biobank and Registry, Russell BE, Weksberg R, Arboleda VA | JCI insight | 37053013 | JCI Insight | 2023 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/37053013 |
| Identification of novel PIEZO1 variants using prenatal exome sequencing and correlation to ultrasound and autopsy findings of recurrent hydrops fetalis. | Datkhaeva I, Arboleda VA, Senaratne TN, Nikpour G, Meyerson C, Geng Y, Afshar Y, Scibetta E, Goldstein J, Quintero-Rivera F, Crandall BF, Grody WW, Deignan J, Janzen C | American journal of medical genetics. Part A | 30244526 | Am J Med Genet A | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30244526 |
| Phenotype-Specific Enrichment of Mendelian Disorder Genes near GWAS Regions across 62 Complex Traits. | Freund MK, Burch KS, Shi H, Mancuso N, Kichaev G, Garske KM, Pan DZ, Miao Z, Mohlke KL, Laakso M, Pajukanta P, Pasaniuc B, Arboleda VA | American journal of human genetics | 30290150 | Am J Hum Genet | 2018 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/30290150 |
| Novel variants in KAT6B spectrum of disorders expand our knowledge of clinical manifestations and molecular mechanisms. | Yabumoto M, Kianmahd J, Singh M, Palafox MF, Wei A, Elliott K, Goodloe DH, Dean SJ, Gooch C, Murray BK, Swartz E, Schrier Vergano SA, Towne MC, Nugent K, Roeder ER, Kresge C, Pletcher BA, Grand K, Graham JM Jr, Gates R, Gomez-Ospina N, Ramanathan S, Clark RD, Glaser K, Benke PJ, Cohen JS, Fatemi A, Mu W, Baranano KW, Madden JA, Gubbels CS, Yu TW, Agrawal PB, Chambers MK, Phornphutkul C, Pugh JA, Tauber KA, Azova S, Smith JR, O'Donnell-Luria A, Medsker H, Srivastava S, Krakow D, Schweitzer DN, Arboleda VA | Molecular genetics & genomic medicine | 34519438 | Mol Genet Genomic Med | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/34519438 |
| Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples. | Bloom JS, Sathe L, Munugala C, Jones EM, Gasperini M, Lubock NB, Yarza F, Thompson EM, Kovary KM, Park J, Marquette D, Kay S, Lucas M, Love T, Sina Booeshaghi A, Brandenberg OF, Guo L, Boocock J, Hochman M, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, Oland G, Choe BJ, Chandrasekaran S, Hilt EE, Butte MJ, Damoiseaux R, Kravit C, Cooper AR, Yin Y, Pachter L, Garner OB, Flint J, Eskin E, Luo C, Kosuri S, Kruglyak L, Arboleda VA | Nature biomedical engineering | 34211145 | Nat Biomed Eng | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34211145 |
| Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative. | Johnson R, Ding Y, Venkateswaran V, Bhattacharya A, Boulier K, Chiu A, Knyazev S, Schwarz T, Freund M, Zhan L, Burch KS, Caggiano C, Hill B, Rakocz N, Balliu B, Denny CT, Sul JH, Zaitlen N, Arboleda VA, Halperin E, Sankararaman S, Butte MJ, UCLA Precision Health Data Discovery Repository Working Group, UCLA Precision Health ATLAS Working Group, Lajonchere C, Geschwind DH, Pasaniuc B | Genome medicine | 36085083 | Genome Med | 2022 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/36085083 |
| Prioritizing disease-associated missense variants with chemoproteomic-detected amino acids. | Palafox MF, Boatner L, Wilde BR, Christofk H, Backus KM, Arboleda VA | American journal of human genetics | 40412387 | Am J Hum Genet | 2025 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/40412387 |
| Increased Frequency of Clonal Hematopoiesis of Indeterminate Potential in Bloom Syndrome Probands and Carriers. | Lin I, Wei A, Gebo TA, Boutros PC, Flanagan M, Kucine N, Cunniff C, Arboleda VA, Chang VY | medRxiv : the preprint server for health sciences | 38370823 | medRxiv | 2024 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/38370823 |
| Increased frequency of clonal hematopoiesis of indeterminate potential in Bloom syndrome probands and carriers. | Lin I, Wei A, Gebo TA, Boutros PC, Flanagan M, Kucine N, Cunniff C, Arboleda VA, Chang VY | Haematologica | 39049596 | Haematologica | 2025 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/39049596 |
| Electronic health record signatures identify undiagnosed patients with common variable immunodeficiency disease. | Johnson R, Stephens AV, Mester R, Knyazev S, Kohn LA, Freund MK, Bondhus L, Hill BL, Schwarz T, Zaitlen N, Arboleda VA, A Bastarache L, Pasaniuc B, Butte MJ | Science translational medicine | 38691621 | Sci Transl Med | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38691621 |
| Disease risk and healthcare utilization among ancestrally diverse groups in the Los Angeles region. | Caggiano C, Boudaie A, Shemirani R, Mefford J, Petter E, Chiu A, Ercelen D, He R, Tward D, Paul KC, Chang TS, Pasaniuc B, Kenny EE, Shortt JA, Gignoux CR, Balliu B, Arboleda VA, Belbin G, Zaitlen N | Nature medicine | 37464048 | Nat Med | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37464048 |
| DMRscaler: a scale-aware method to identify regions of differential DNA methylation spanning basepair to multi-megabase features. | Bondhus L, Wei A, Arboleda VA | BMC bioinformatics | 36064314 | BMC Bioinformatics | 2022 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/36064314 |
| Polygenic risk scores of endo-phenotypes identify the effect of genetic background in congenital heart disease. | Spendlove SJ, Bondhus L, Lluri G, Sul JH, Arboleda VA | HGG advances | 35599848 | HGG Adv | 2022 Jul 14 | https://www.ncbi.nlm.nih.gov/pubmed/35599848 |
| The omics era: a nexus of untapped potential for Mendelian chromatinopathies. | Nava AA, Arboleda VA | Human genetics | 37115317 | Hum Genet | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37115317 |
| KAT6A mutations in Arboleda-Tham syndrome drive epigenetic regulation of posterior HOXC cluster. | Singh M, Spendlove SJ, Wei A, Bondhus LM, Nava AA, de L Vitorino FN, Amano S, Lee J, Echeverria G, Gomez D, Garcia BA, Arboleda VA | Human genetics | 37861717 | Hum Genet | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37861717 |
| KAT6A Syndrome: genotype-phenotype correlation in 76 patients with pathogenic KAT6A variants. | Kennedy J, Goudie D, Blair E, Chandler K, Joss S, McKay V, Green A, Armstrong R, Lees M, Kamien B, Hopper B, Tan TY, Yap P, Stark Z, Okamoto N, Miyake N, Matsumoto N, Macnamara E, Murphy JL, McCormick E, Hakonarson H, Falk MJ, Li D, Blackburn P, Klee E, Babovic-Vuksanovic D, Schelley S, Hudgins L, Kant S, Isidor B, Cogne B, Bradbury K, Williams M, Patel C, Heussler H, Duff-Farrier C, Lakeman P, Scurr I, Kini U, Elting M, Reijnders M, Schuurs-Hoeijmakers J, Wafik M, Blomhoff A, Ruivenkamp CAL, Nibbeling E, Dingemans AJM, Douine ED, Nelson SF, DDD Study,, Hempel M, Bierhals T, Lessel D, Johannsen J, Arboleda VA, Newbury-Ecob R | Genetics in medicine : official journal of the American College of Medical Genetics | 30245513 | Genet Med | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30245513 |
| From chemoproteomic-detected amino acids to genomic coordinates: insights into precise multi-omic data integration. | Palafox MF, Desai HS, Arboleda VA, Backus KM | Molecular systems biology | 33599394 | Mol Syst Biol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33599394 |
| Lower Severe Acute Respiratory Syndrome Coronavirus 2 Viral Shedding Following Coronavirus Disease 2019 Vaccination Among Healthcare Workers in Los Angeles, California. | Adamson PC, Pfeffer MA, Arboleda VA, Garner OB, de St Maurice A, von Bredow B, Flint J, Kruglyak L, Currier JS | Open forum infectious diseases | 35005055 | Open Forum Infect Dis | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35005055 |
| Lean Principles to Improve Quality in High-Throughput COVID-19 Testing Using SwabSeq: A Barcoded Sequencing-Based Testing Platform. | Jones J, Saul R, Sathe L, Xie J, Marquette D, Arboleda VA | Laboratory medicine | 34436601 | Lab Med | 2022 Jan 6 | https://www.ncbi.nlm.nih.gov/pubmed/34436601 |
| DNA methylation signature associated with Bohring-Opitz syndrome: a new tool for functional classification of variants in ASXL genes. | Awamleh Z, Chater-Diehl E, Choufani S, Wei E, Kianmahd RR, Yu A, Chad L, Costain G, Tan WH, Scherer SW, Arboleda VA, Russell BE, Weksberg R | European journal of human genetics : EJHG | 35361921 | Eur J Hum Genet | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35361921 |
| KAT6A mutations in Arboleda-Tham syndrome drive epigenetic regulation of posterior HOXC cluster. | Singh M, Spendlove S, Wei A, Bondhus L, Nava A, de L Vitorino FN, Amano S, Lee J, Echeverria G, Gomez D, Garcia BA, Arboleda VA | bioRxiv : the preprint server for biology | 37577627 | bioRxiv | 2023 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/37577627 |
| Profiling the genome-wide landscape of tandem repeat expansions. | Mousavi N, Shleizer-Burko S, Yanicky R, Gymrek M | Nucleic acids research | 31194863 | Nucleic Acids Res | 2019 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/31194863 |
| TRTools: a toolkit for genome-wide analysis of tandem repeats. | Mousavi N, Margoliash J, Pusarla N, Saini S, Yanicky R, Gymrek M | Bioinformatics (Oxford, England) | 32805020 | Bioinformatics | 2021 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/32805020 |
| A reference haplotype panel for genome-wide imputation of short tandem repeats. | Saini S, Mitra I, Mousavi N, Fotsing SF, Gymrek M | Nature communications | 30353011 | Nat Commun | 2018 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/30353011 |
| Patterns of de novo tandem repeat mutations and their role in autism. | Mitra I, Huang B, Mousavi N, Ma N, Lamkin M, Yanicky R, Shleizer-Burko S, Lohmueller KE, Gymrek M | Nature | 33442040 | Nature | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33442040 |
| Missing heritability may be hiding in repeats. | Gymrek M, Goren A | Science (New York, N.Y.) | 34554784 | Science | 2021 Sep 24 | https://www.ncbi.nlm.nih.gov/pubmed/34554784 |
| Deep learning predicts the impact of regulatory variants on cell-type-specific enhancers in the brain. | Zheng A, Shen Z, Glass CK, Gymrek M | Bioinformatics advances | 36726730 | Bioinform Adv | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36726730 |
| Targeted genotyping of variable number tandem repeats with adVNTR. | Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V | Genome research | 30352806 | Genome Res | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/30352806 |
| The impact of short tandem repeat variation on gene expression. | Fotsing SF, Margoliash J, Wang C, Saini S, Yanicky R, Shleizer-Burko S, Goren A, Gymrek M | Nature genetics | 31676866 | Nat Genet | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31676866 |
| Polymorphic short tandem repeats make widespread contributions to blood and serum traits. | Margoliash J, Fuchs S, Li Y, Zhang X, Massarat A, Goren A, Gymrek M | Cell genomics | 38116119 | Cell Genom | 2023 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/38116119 |
| WebSTR: A Population-wide Database of Short Tandem Repeat Variation in Humans. | Lundström OS, Adriaan Verbiest M, Xia F, Jam HZ, Zlobec I, Anisimova M, Gymrek M | Journal of molecular biology | 37678708 | J Mol Biol | 2023 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/37678708 |
| Genome-wide selection inference at short tandem repeats. | Huang B, Durvasula A, Mousavi N, Ziaei-Jam H, Maksimov M, Lohmueller KE, Gymrek M | PLoS genetics | 41325473 | PLoS Genet | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41325473 |
| The Radiobiology of Radiopharmaceuticals. | Morris ZS, Wang AZ, Knox SJ | Seminars in radiation oncology | 33246632 | Semin Radiat Oncol | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33246632 |
| Radiation Augments the Local Anti-Tumor Effect of In Situ Vaccine With CpG-Oligodeoxynucleotides and Anti-OX40 in Immunologically Cold Tumor Models. | Pieper AA, Zangl LM, Speigelman DV, Feils AS, Hoefges A, Jagodinsky JC, Felder MA, Tsarovsky NW, Arthur IS, Brown RJ, Birstler J, Le T, Carlson PM, Bates AM, Hank JA, Rakhmilevich AL, Erbe AK, Sondel PM, Patel RB, Morris ZS | Frontiers in immunology | 34868010 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34868010 |
| Local TLR4 stimulation augments in situ vaccination induced via local radiation and anti-CTLA-4 checkpoint blockade through induction of CD8 T-cell independent Th1 polarization. | Jagodinsky JC, Bates AM, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarty I, Nystuen EJ, Kim K, Sondel PM, Jin WJ, Morris ZS | Journal for immunotherapy of cancer | 36192087 | J Immunother Cancer | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36192087 |
| Multifunctional nanoparticle potentiates the in situ vaccination effect of radiation therapy and enhances response to immune checkpoint blockade. | Zhang Y, Sriramaneni RN, Clark PA, Jagodinsky JC, Ye M, Jin W, Wang Y, Bates A, Kerr CP, Le T, Allawi R, Wang X, Xie R, Havighurst TC, Chakravarty I, Rakhmilevich AL, O'Leary KA, Schuler LA, Sondel PM, Kim K, Gong S, Morris ZS | Nature communications | 35999216 | Nat Commun | 2022 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/35999216 |
| Developments in Combining Targeted Radionuclide Therapies and Immunotherapies for Cancer Treatment. | Kerr CP, Grudzinski JJ, Nguyen TP, Hernandez R, Weichert JP, Morris ZS | Pharmaceutics | 36678756 | Pharmaceutics | 2022 Dec 30 | https://www.ncbi.nlm.nih.gov/pubmed/36678756 |
| Combination of Bempegaldesleukin and Anti-CTLA-4 Prevents Metastatic Dissemination After Primary Resection or Radiotherapy in a Preclinical Model of Non-Small Cell Lung Cancer. | Bates AM, Brown RJ, Pieper AA, Zangl LM, Arthur I, Carlson PM, Le T, Sosa GA, Clark PA, Sriramaneni RN, Kim K, Patel RB, Morris ZS | Frontiers in oncology | 33937052 | Front Oncol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33937052 |
| The Promise of Combining Radiation Therapy With Immunotherapy. | Jagodinsky JC, Harari PM, Morris ZS | International journal of radiation oncology, biology, physics | 32335187 | Int J Radiat Oncol Biol Phys | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32335187 |
| Priming and Propagating Anti-tumor Immunity: Focal Hypofractionated Radiation for in Situ Vaccination and Systemic Targeted Radionuclide Theranostics for Immunomodulation of Tumor Microenvironments. | Jagodinsky JC, Morris ZS | Seminars in radiation oncology | 32381297 | Semin Radiat Oncol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32381297 |
| Antibody landscape of C57BL/6 mice cured of B78 melanoma via a combined radiation and immunocytokine immunotherapy regimen. | Hoefges A, McIlwain SJ, Erbe AK, Mathers N, Xu A, Melby D, Tetreault K, Le T, Kim K, Pinapati RS, Garcia BH, Patel J, Heck M, Feils AS, Tsarovsky N, Hank JA, Morris ZS, Ong IM, Sondel PM | Frontiers in immunology | 38077403 | Front Immunol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38077403 |
| MRI-Guided Radiation Therapy. | Lee SL, Hall WA, Morris ZS, Christensen L, Bassetti M | Advances in oncology | 37064601 | Adv Oncol | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/37064601 |
| Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade. | Jagodinsky JC, Vera JM, Jin WJ, Shea AG, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarthy I, Allawi RH, Kim K, Harari PM, Sondel PM, Newton MA, Crittenden MR, Gough MJ, Miller JR, Ong IM, Morris ZS | Science translational medicine | 39292804 | Sci Transl Med | 2024 Sep 18 | https://www.ncbi.nlm.nih.gov/pubmed/39292804 |
| (90)Y-NM600 targeted radionuclide therapy induces immunologic memory in syngeneic models of T-cell Non-Hodgkin's Lymphoma. | Hernandez R, Walker KL, Grudzinski JJ, Aluicio-Sarduy E, Patel R, Zahm CD, Pinchuk AN, Massey CF, Bitton AN, Brown RJ, Sondel PM, Morris ZS, Engle JW, Capitini CM, Weichert JP | Communications biology | 30820474 | Commun Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30820474 |
| Development of an In Situ Cancer Vaccine via Combinational Radiation and Bacterial-Membrane-Coated Nanoparticles. | Patel RB, Ye M, Carlson PM, Jaquish A, Zangl L, Ma B, Wang Y, Arthur I, Xie R, Brown RJ, Wang X, Sriramaneni R, Kim K, Gong S, Morris ZS | Advanced materials (Deerfield Beach, Fla.) | 31523868 | Adv Mater | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31523868 |
| Combined innate and adaptive immunotherapy overcomes resistance of immunologically cold syngeneic murine neuroblastoma to checkpoint inhibition. | Voeller J, Erbe AK, Slowinski J, Rasmussen K, Carlson PM, Hoefges A, VandenHeuvel S, Stuckwisch A, Wang X, Gillies SD, Patel RB, Farrel A, Rokita JL, Maris J, Hank JA, Morris ZS, Rakhmilevich AL, Sondel PM | Journal for immunotherapy of cancer | 31810498 | J Immunother Cancer | 2019 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/31810498 |
| A multipurpose brachytherapy catheter to enable intratumoral injection. | Jagodinsky JC, Medeiros G, Raj HH, Razuan A, Locsin A, Dempsey TG, Tang B, Chakravarty I, Clark PA, Sriramaneni RN, Jin WJ, Lan KH, Das RK, Miller JR, Suarez-Gonzalez D, Morris ZS | Brachytherapy | 33785280 | Brachytherapy | 2021 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/33785280 |
| Depth of tumor implantation affects response to in situ vaccination in a syngeneic murine melanoma model. | Carlson PM, Mohan M, Rodriguez M, Subbotin V, Sun CX, Patel RB, Birstler J, Hank JA, Rakhmilevich AL, Morris ZS, Erbe AK, Sondel PM | Journal for immunotherapy of cancer | 33858849 | J Immunother Cancer | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33858849 |
| Radiation to all macroscopic sites of tumor permits greater systemic antitumor response to in situ vaccination. | Carlson PM, Patel RB, Birstler J, Rodriquez M, Sun C, Erbe AK, Bates AM, Marsh I, Grudzinski J, Hernandez R, Pieper AA, Feils AS, Rakhmilevich AL, Weichert JP, Bednarz BP, Sondel PM, Morris ZS | Journal for immunotherapy of cancer | 36639155 | J Immunother Cancer | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36639155 |
| Temporal analysis of type 1 interferon activation in tumor cells following external beam radiotherapy or targeted radionuclide therapy. | Jagodinsky JC, Jin WJ, Bates AM, Hernandez R, Grudzinski JJ, Marsh IR, Chakravarty I, Arthur IS, Zangl LM, Brown RJ, Nystuen EJ, Emma SE, Kerr C, Carlson PM, Sriramaneni RN, Engle JW, Aluicio-Sarduy E, Barnhart TE, Le T, Kim K, Bednarz BP, Weichert JP, Patel RB, Morris ZS | Theranostics | 33995649 | Theranostics | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33995649 |
| Transcriptional-mediated effects of radiation on the expression of immune susceptibility markers in melanoma. | Werner LR, Kler JS, Gressett MM, Riegert M, Werner LK, Heinze CM, Kern JG, Abbariki M, Erbe AK, Patel RB, Sriramaneni RN, Harari PM, Morris ZS | Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology | 28893414 | Radiother Oncol | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28893414 |
| Tumor-Specific Inhibition of In Situ Vaccination by Distant Untreated Tumor Sites. | Morris ZS, Guy EI, Werner LR, Carlson PM, Heinze CM, Kler JS, Busche SM, Jaquish AA, Sriramaneni RN, Carmichael LL, Loibner H, Gillies SD, Korman AJ, Erbe AK, Hank JA, Rakhmilevich AL, Harari PM, Sondel PM | Cancer immunology research | 29748391 | Cancer Immunol Res | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29748391 |
| In situ Vaccine Plus Checkpoint Blockade Induces Memory Humoral Response. | Baniel CC, Heinze CM, Hoefges A, Sumiec EG, Hank JA, Carlson PM, Jin WJ, Patel RB, Sriramaneni RN, Gillies SD, Erbe AK, Schwarz CN, Pieper AA, Rakhmilevich AL, Sondel PM, Morris ZS | Frontiers in immunology | 32849544 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32849544 |
| In situ vaccination at a peripheral tumor site augments response against melanoma brain metastases. | Clark PA, Sriramaneni RN, Jin WJ, Jagodinsky JC, Bates AM, Jaquish AA, Anderson BR, Le T, Lubin JA, Chakravarty I, Arthur IS, Heinze CM, Guy EI, Kler J, Klar KA, Carlson PM, Kim KM, Kuo JS, Morris ZS | Journal for immunotherapy of cancer | 32690669 | J Immunother Cancer | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32690669 |
| Low-dose targeted radionuclide therapy renders immunologically cold tumors responsive to immune checkpoint blockade. | Patel RB, Hernandez R, Carlson P, Grudzinski J, Bates AM, Jagodinsky JC, Erbe A, Marsh IR, Arthur I, Aluicio-Sarduy E, Sriramaneni RN, Jin WJ, Massey C, Rakhmilevich AL, Vail D, Engle JW, Le T, Kim K, Bednarz B, Sondel PM, Weichert J, Morris ZS | Science translational medicine | 34261797 | Sci Transl Med | 2021 Jul 14 | https://www.ncbi.nlm.nih.gov/pubmed/34261797 |
| Optimizing Flow Cytometric Analysis of Immune Cells in Samples Requiring Cryopreservation from Tumor-Bearing Mice. | Carlson PM, Mohan M, Patel RB, Birstler J, Nettenstrom L, Sheerar D, Fox K, Rodriguez M, Hoefges A, Hernandez R, Zahm C, Kim K, McNeel DG, Weichert J, Morris ZS, Sondel PM | Journal of immunology (Baltimore, Md. : 1950) | 34261667 | J Immunol | 2021 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/34261667 |
| Factors impacting the efficacy of the in-situ vaccine with CpG and OX40 agonist. | Pieper AA, Spiegelman DV, Felder MAR, Feils AS, Tsarovsky NW, Zaborek J, Morris ZS, Erbe AK, Rakhmilevich AL, Sondel PM | Cancer immunology, immunotherapy : CII | 37016127 | Cancer Immunol Immunother | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37016127 |
| In Situ Vaccination Following Intratumoral Injection of IL2 and Poly-l-lysine/Iron Oxide/CpG Nanoparticles to a Radiated Tumor Site. | Zhang Y, Rahman MM, Clark PA, Sriramaneni RN, Havighurst T, Kerr CP, Zhu M, Jones J, Wang X, Kim K, Gong S, Morris ZS | ACS nano | 37216491 | ACS Nano | 2023 Jun 13 | https://www.ncbi.nlm.nih.gov/pubmed/37216491 |
| ATM inhibition augments type I interferon response and antitumor T-cell immunity when combined with radiation therapy in murine tumor models. | Jin WJ, Zangl LM, Hyun M, Massoud E, Schroeder K, Alexandridis RA, Morris ZS | Journal for immunotherapy of cancer | 37730275 | J Immunother Cancer | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37730275 |
| Combining brachytherapy and immunotherapy to achieve in situ tumor vaccination: A review of cooperative mechanisms and clinical opportunities. | Patel RB, Baniel CC, Sriramaneni RN, Bradley K, Markovina S, Morris ZS | Brachytherapy | 30078541 | Brachytherapy | 2018 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/30078541 |
| Tumor-Specific Antibody, Cetuximab, Enhances the In Situ Vaccine Effect of Radiation in Immunologically Cold Head and Neck Squamous Cell Carcinoma. | Jin WJ, Erbe AK, Schwarz CN, Jaquish AA, Anderson BR, Sriramaneni RN, Jagodinsky JC, Bates AM, Clark PA, Le T, Lan KH, Chen Y, Kim K, Morris ZS | Frontiers in immunology | 33281820 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33281820 |
| Low-Dose Radiation Potentiates the Propagation of Anti-Tumor Immunity against Melanoma Tumor in the Brain after In Situ Vaccination at a Tumor outside the Brain. | Clark PA, Sriramaneni RN, Bates AM, Jin WJ, Jagodinsky JC, Hernandez R, Le T, Jeffery JJ, Marsh IR, Grudzinski JJ, Aluicio-Sarduy E, Barnhart TE, Anderson BR, Chakravarty I, Arthur IS, Kim K, Engle JW, Bednarz BP, Weichert JP, Morris ZS | Radiation research | 33826741 | Radiat Res | 2021 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/33826741 |
| Combination of radiation therapy, bempegaldesleukin, and checkpoint blockade eradicates advanced solid tumors and metastases in mice. | Pieper AA, Rakhmilevich AL, Spiegelman DV, Patel RB, Birstler J, Jin WJ, Carlson PM, Charych DH, Hank JA, Erbe AK, Overwijk WW, Morris ZS, Sondel PM | Journal for immunotherapy of cancer | 34172518 | J Immunother Cancer | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34172518 |
| Using Radiation Therapy to Prime and Propagate an Anti-tumor Immune Response Against Brain Tumors. | Onate AJ, Clark PA, Morris ZS | Neuromolecular medicine | 34081276 | Neuromolecular Med | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34081276 |
| NK cells propagate T cell immunity following in situ tumor vaccination. | Jin WJ, Jagodinsky JC, Vera JM, Clark PA, Zuleger CL, Erbe AK, Ong IM, Le T, Tetreault K, Berg T, Rakhmilevich AL, Kim K, Newton MA, Albertini MR, Sondel PM, Morris ZS | Cell reports | 38096050 | Cell Rep | 2023 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/38096050 |
| Core systems of music perception. | Mehr SA | Trends in cognitive sciences | 40517090 | Trends Cogn Sci | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40517090 |
| Toward a productive evolutionary understanding of music. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 34588071 | Behav Brain Sci | 2021 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/34588071 |
| Children infer the behavioral contexts of unfamiliar foreign songs. | Hilton CB, Crowley-de Thierry L, Yan R, Martin A, Mehr SA | Journal of experimental psychology. General | 36222671 | J Exp Psychol Gen | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36222671 |
| The ability to predict actions of others from distributed cues is still developing in 6- to 8-year-old children. | McMahon E, Kim D, Mehr SA, Nakayama K, Spelke ES, Vaziri-Pashkam M | Journal of vision | 34003244 | J Vis | 2021 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/34003244 |
| Online Developmental Science to Foster Innovation, Access, and Impact. | Sheskin M, Scott K, Mills CM, Bergelson E, Bonawitz E, Spelke ES, Fei-Fei L, Keil FC, Gweon H, Tenenbaum JB, Jara-Ettinger J, Adolph KE, Rhodes M, Frank MC, Mehr SA, Schulz L | Trends in cognitive sciences | 32624386 | Trends Cogn Sci | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32624386 |
| Infants relax in response to unfamiliar foreign lullabies. | Bainbridge CM, Bertolo M, Youngers J, Atwood S, Yurdum L, Simson J, Lopez K, Xing F, Martin A, Mehr SA | Nature human behaviour | 33077883 | Nat Hum Behav | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33077883 |
| Music, a piece of many puzzles in developmental science. | Mehr SA, Bortfeld H | Developmental science | 37501524 | Dev Sci | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37501524 |
| Developmental psychologists should adopt citizen science to improve generalization and reproducibility. | Li W, Germine LT, Mehr SA, Srinivasan M, Hartshorne J | Infant and child development | 38515737 | Infant Child Dev | 2024 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/38515737 |
| Cross-Cultural Work in Music Cognition: Challenges, Insights, and Recommendations. | Jacoby N, Margulis EH, Clayton M, Hannon E, Honing H, Iversen J, Klein TR, Mehr SA, Pearson L, Peretz I, Perlman M, Polak R, Ravignani A, Savage PE, Steingo G, Stevens CJ, Trainor L, Trehub S, Veal M, Wald-Fuhrmann M | Music perception | 36936548 | Music Percept | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36936548 |
| Ecological Momentary Assessment Reveals Causal Effects of Music Enrichment on Infant Mood. | Cho E, Yurdum L, Ebinne E, Hilton CB, Lai E, Bertolo M, Brown P, Milosh B, Sened H, Tamir DI, Mehr SA | Child development | 40432545 | Child Dev | 2025 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/40432545 |
| Spectro-temporal acoustical markers differentiate speech from song across cultures. | Albouy P, Mehr SA, Hoyer RS, Ginzburg J, Du Y, Zatorre RJ | Nature communications | 38844457 | Nat Commun | 2024 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/38844457 |
| Form and Function in Human Song. | Mehr SA, Singh M, York H, Glowacki L, Krasnow MM | Current biology : CB | 29395919 | Curr Biol | 2018 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/29395919 |
| Response to vocal music in Angelman syndrome contrasts with Prader-Willi syndrome. | Kotler J, Mehr SA, Egner A, Haig D, Krasnow MM | Evolution and human behavior : official journal of the Human Behavior and Evolution Society | 32655274 | Evol Hum Behav | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32655274 |
| Universality and diversity in human song. | Mehr SA, Singh M, Knox D, Ketter DM, Pickens-Jones D, Atwood S, Lucas C, Jacoby N, Egner AA, Hopkins EJ, Howard RM, Hartshorne JK, Jennings MV, Simson J, Bainbridge CM, Pinker S, O'Donnell TJ, Krasnow MM, Glowacki L | Science (New York, N.Y.) | 31753969 | Science | 2019 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/31753969 |
| Origins of music in credible signaling. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 32843107 | Behav Brain Sci | 2020 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/32843107 |
| Across demographics and recent history, most parents sing to their infants and toddlers daily. | Yan R, Jessani G, Spelke ES, de Villiers P, de Villiers J, Mehr SA | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 34719251 | Philos Trans R Soc Lond B Biol Sci | 2021 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/34719251 |
| Expectancy Effects Threaten the Inferential Validity of Synchrony-Prosociality Research. | Atwood S, Schachner A, Mehr SA | Open mind : discoveries in cognitive science | 36891035 | Open Mind (Camb) | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36891035 |
| Universal interpretations of vocal music. | Yurdum L, Singh M, Glowacki L, Vardy T, Atkinson QD, Hilton CB, Sauter D, Krasnow MM, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 37676911 | Proc Natl Acad Sci U S A | 2023 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/37676911 |
| The presence of fear: How subjective fear, not physiological changes, shapes the experience of presence. | Maymon CN, Crawford MT, Blackburne K, Botes A, Carnegie K, Mehr SA, Meier J, Murphy J, Miles NL, Robinson K, Tooley M, Grimshaw GM | Journal of experimental psychology. General | 38635168 | J Exp Psychol Gen | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38635168 |
| Language experience predicts music processing in a half-million speakers of fifty-four languages. | Liu J, Hilton CB, Bergelson E, Mehr SA | Current biology : CB | 40245864 | Curr Biol | 2025 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/40245864 |
| Sight-over-sound judgments of music performances are replicable effects with limited interpretability. | Mehr SA, Scannell DA, Winner E | PloS one | 30183719 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30183719 |
| Sound-induced motion in chimpanzees does not imply shared ancestry for music or dance. | Bertolo M, Singh M, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 33443199 | Proc Natl Acad Sci U S A | 2021 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/33443199 |
| Acoustic regularities in infant-directed speech and song across cultures. | Hilton CB, Moser CJ, Bertolo M, Lee-Rubin H, Amir D, Bainbridge CM, Simson J, Knox D, Glowacki L, Alemu E, Galbarczyk A, Jasienska G, Ross CT, Neff MB, Martin A, Cirelli LK, Trehub SE, Song J, Kim M, Schachner A, Vardy TA, Atkinson QD, Salenius A, Andelin J, Antfolk J, Madhivanan P, Siddaiah A, Placek CD, Salali GD, Keestra S, Singh M, Collins SA, Patton JQ, Scaff C, Stieglitz J, Cutipa SC, Moya C, Sagar RR, Anyawire M, Mabulla A, Wood BM, Krasnow MM, Mehr SA | Nature human behaviour | 35851843 | Nat Hum Behav | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35851843 |
| How games can make behavioural science better. | Long B, Simson J, Buxó-Lugo A, Watson DG, Mehr SA | Nature | 36650244 | Nature | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36650244 |
| Language experience predicts music processing in a half-million speakers of fifty-four languages. | Liu J, Hilton CB, Bergelson E, Mehr SA | Current biology : CB | 37105166 | Curr Biol | 2023 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/37105166 |
| Citizen science can help to alleviate the generalizability crisis. | Hilton CB, Mehr SA | The Behavioral and brain sciences | 35139973 | Behav Brain Sci | 2022 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/35139973 |
| Health Reform and Utilization of High-Volume Hospitals for Complex Cancer Operations. | Loehrer AP, Chang DC, Song Z, Chang GJ | Journal of oncology practice | 29155612 | J Oncol Pract | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29155612 |
| Prices And Cost Sharing For Psychotherapy In Network Versus Out Of Network In The United States. | Benson NM, Song Z | Health affairs (Project Hope) | 32634359 | Health Aff (Millwood) | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32634359 |
| The US Affordable Care Act: Reflections and directions at the close of a decade. | McIntyre A, Song Z | PLoS medicine | 30807584 | PLoS Med | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30807584 |
| Changes in Hospital Income, Use, and Quality Associated With Private Equity Acquisition. | Bruch JD, Gondi S, Song Z | JAMA internal medicine | 32833006 | JAMA Intern Med | 2020 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/32833006 |
| Increases in Medicare Spending and Use after Private Equity Acquisition of Retina Practices. | Singh Y, Aderman CM, Song Z, Polsky D, Zhu JM | Ophthalmology | 37557920 | Ophthalmology | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37557920 |
| Health Care Utilization among Homeless-Experienced Adults Who Were Seen by a Mobile Addiction Health Clinic in Boston, Massachusetts: A Quasi-Experimental Study. | Fine DR, Joyce A, Chang Y, Lewis E, Weinstock K, Wright J, Gaeta J, Song Z, Baggett TP | Substance use & misuse | 37184078 | Subst Use Misuse | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37184078 |
| Moving Beyond the Hospital. | McCarthy CP, Vaduganathan M, Song Z | Circulation | 30571513 | Circulation | 2018 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/30571513 |
| Firearm Injuries In Children And Adolescents: Health And Economic Consequences Among Survivors And Family Members. | Song Z, Zubizarreta JR, Giuriato M, Koh KA, Sacks CA | Health affairs (Project Hope) | 37931194 | Health Aff (Millwood) | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37931194 |
| Baby Boomers and Beds: a Demographic Challenge for the Ages. | Song Z, Ferris TG | Journal of general internal medicine | 29273896 | J Gen Intern Med | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29273896 |
| Incorporating value into physician payment and patient cost sharing. | Song Z, Navathe AS, Emanuel EJ, Volpp KG | The American journal of managed care | 29553274 | Am J Manag Care | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29553274 |
| Type 2 Myocardial Infarction and the Hospital Readmission Reduction Program. | McCarthy CP, Vaduganathan M, Singh A, Song Z, Blankstein R, Gaggin HK, Wasfy JH, Januzzi JL Jr | Journal of the American College of Cardiology | 30165988 | J Am Coll Cardiol | 2018 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/30165988 |
| Evaluation of Economic and Clinical Outcomes Under Centers for Medicare & Medicaid Services Mandatory Bundled Payments for Joint Replacements. | Haas DA, Zhang X, Kaplan RS, Song Z | JAMA internal medicine | 31157819 | JAMA Intern Med | 2019 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/31157819 |
| Out-of-Network Spending on Behavioral Health, 2008-2016. | Song Z, Lillehaugen T, Busch SH, Benson NM, Wallace J | Journal of general internal medicine | 31993946 | J Gen Intern Med | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31993946 |
| Health Care Spending And Use Among People Experiencing Unstable Housing In The Era Of Accountable Care Organizations. | Koh KA, Racine M, Gaeta JM, Goldie J, Martin DP, Bock B, Takach M, O'Connell JJ, Song Z | Health affairs (Project Hope) | 32011951 | Health Aff (Millwood) | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32011951 |
| Racial Disparities in Patient-Reported Measures of Physician Cultural Competency Among Cancer Survivors in the United States. | Butler SS, Winkfield KM, Ahn C, Song Z, Dee EC, Mahal BA, Sanford NN | JAMA oncology | 31670752 | JAMA Oncol | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31670752 |
| Making the Affordable Care Act Marketplace More Affordable. | Song Z | JAMA health forum | 36046713 | JAMA Health Forum | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/36046713 |
| Mortality Quadrupled Among Opioid-Driven Hospitalizations, Notably Within Lower-Income And Disabled White Populations. | Song Z | Health affairs (Project Hope) | 29200349 | Health Aff (Millwood) | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29200349 |
| Physician-initiated payment reform: a new path toward value. | Gondi S, Ferris TG, Patel KK, Song Z | The American journal of managed care | 31518092 | Am J Manag Care | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31518092 |
| Characteristics of Private Equity-Owned Hospitals in 2018. | Bruch J, Zeltzer D, Song Z | Annals of internal medicine | 32986485 | Ann Intern Med | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32986485 |
| Mortality Before and After Border Wall Construction Along the US-Mexico Border, 1990-2017. | Bruch JD, Barin O, Venkataramani AS, Song Z | American journal of public health | 34197717 | Am J Public Health | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34197717 |
| Out-of-Network Laboratory Test Spending, Utilization, and Prices in the US. | Song Z, Lillehaugen T, Wallace J | JAMA | 33904879 | JAMA | 2021 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/33904879 |
| Improving Affordability and Equity in Medicare Advantage. | Song Z, Basu S | Inquiry : a journal of medical care organization, provision and financing | 31208262 | Inquiry | 2019 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/31208262 |
| Will Increasing Primary Care Spending Alone Save Money? | Song Z, Gondi S | JAMA | 31415068 | JAMA | 2019 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/31415068 |
| Physician Practice Pattern Variations in Common Clinical Scenarios Within 5 US Metropolitan Areas. | Song Z, Kannan S, Gambrel RJ, Marino M, Vaduganathan M, Clapp MA, Seiglie JA, Bloom PP, Malik AN, Resnick MJ | JAMA health forum | 35977237 | JAMA Health Forum | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35977237 |
| Association of Private Equity Acquisition of Physician Practices With Changes in Health Care Spending and Utilization. | Singh Y, Song Z, Polsky D, Bruch JD, Zhu JM | JAMA health forum | 36218927 | JAMA Health Forum | 2022 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/36218927 |
| Dental Services Use: Medicare Beneficiaries Experience Immediate And Long-Term Reductions After Enrollment. | Simon L, Song Z, Barnett ML | Health affairs (Project Hope) | 36745837 | Health Aff (Millwood) | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36745837 |
| Changes in Out-of-Pocket Costs for US Hospital Admissions Between December and January Every Year. | Kannan S, Song Z | JAMA health forum | 37145689 | JAMA Health Forum | 2023 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/37145689 |
| Changes in Prescription Drug and Health Care Use Over 9 Years After the Large Drug Price Increase for Colchicine. | Ly DP, Giuriato MA, Song Z | JAMA internal medicine | 37155179 | JAMA Intern Med | 2023 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/37155179 |
| Health Insurance Instability Following Firearm Injury: A Matched Cohort Study. | Karandinos G, Giuriato M, Masiakos PT, Sacks CA, Song Z | Annals of surgery | 39968652 | Ann Surg | 2026 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/39968652 |
| Protecting Patients And Society In An Era Of Private Equity Provider Ownership: Challenges And Opportunities For Policy. | Cai C, Song Z | Health affairs (Project Hope) | 38709967 | Health Aff (Millwood) | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38709967 |
| Potential Implications of Private Equity Investments in Health Care Delivery. | Gondi S, Song Z | JAMA | 30816912 | JAMA | 2019 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/30816912 |
| Health Care Spending Slowed After Rhode Island Applied Affordability Standards To Commercial Insurers. | Baum A, Song Z, Landon BE, Phillips RS, Bitton A, Basu S | Health affairs (Project Hope) | 30715981 | Health Aff (Millwood) | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30715981 |
| Health Care Spending, Utilization, and Quality 8 Years into Global Payment. | Song Z, Ji Y, Safran DG, Chernew ME | The New England journal of medicine | 31314969 | N Engl J Med | 2019 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/31314969 |
| Differences in the Complexity of Office Visits by Physician Specialty: NAMCS 2013-2016. | Goodson JD, Shahbazi S, Rao K, Song Z | Journal of general internal medicine | 32157646 | J Gen Intern Med | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32157646 |
| Out-Of-Network Spending Mostly Declined In Privately Insured Populations With A Few Notable Exceptions From 2008 To 2016. | Song Z, Johnson W, Kennedy K, Biniek JF, Wallace J | Health affairs (Project Hope) | 32479236 | Health Aff (Millwood) | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32479236 |
| Implications of Changes in Medicare Payment and Documentation for Primary Care Spending and Time Use. | Basu S, Song Z, Phillips RS, Bitton A, Landon BE | Journal of general internal medicine | 32495087 | J Gen Intern Med | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32495087 |
| Physician Payment Disparities and Access to Services-a Look Across Specialties. | Goodson JD, Shahbazi S, Song Z | Journal of general internal medicine | 31385213 | J Gen Intern Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31385213 |
| Taking account of accountable care. | Song Z | Health services research | 34105147 | Health Serv Res | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34105147 |
| Expansion of Private Equity Involvement in Women's Health Care. | Bruch JD, Borsa A, Song Z, Richardson SS | JAMA internal medicine | 32833005 | JAMA Intern Med | 2020 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/32833005 |
| Racial and Ethnic Disparities in Hospitalization Outcomes Among Medicare Beneficiaries During the COVID-19 Pandemic. | Song Z, Zhang X, Patterson LJ, Barnes CL, Haas DA | JAMA health forum | 35977303 | JAMA Health Forum | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35977303 |
| Geographic Variation in Private Equity Penetration Across Select Office-Based Physician Specialties in the US. | Singh Y, Zhu JM, Polsky D, Song Z | JAMA health forum | 35977319 | JAMA Health Forum | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35977319 |
| Changes in Health Care Spending, Use, and Clinical Outcomes After Nonfatal Firearm Injuries Among Survivors and Family Members : A Cohort Study. | Song Z, Zubizarreta JR, Giuriato M, Paulos E, Koh KA | Annals of internal medicine | 35377713 | Ann Intern Med | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35377713 |
| A Policy Framework for the Growing Influence of Private Equity in Health Care Delivery. | Cai C, Song Z | JAMA | 37052901 | JAMA | 2023 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/37052901 |
| Demographic And Clinical Factors Associated With Long COVID. | Song Z, Giuriato M | Health affairs (Project Hope) | 36877912 | Health Aff (Millwood) | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36877912 |
| Changes in use of low-value services during the COVID-19 pandemic. | Shahzad M, Song Z, Chernew ME, Fendrick AM | The American journal of managed care | 36374618 | Am J Manag Care | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36374618 |
| Two parallel lineage-committed progenitors contribute to the developing brain. | Dundes CE, Jokhai RT, Ahsan H, Kang RS, Salomon-Shulman REA, Rajan A, Kim YS, Stanton LJ, Xu C, Do S, McDonald BD, López JMA, Urrutia HA, Greenfeld H, Wong A, Qu Y, Petkovic AS, Miao Y, Garcia KC, Monje M, Wagner DE, Bronner ME, Lowe CJ, Loh KM | bioRxiv : the preprint server for biology | 40631129 | bioRxiv | 2025 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/40631129 |
| A stem cell roadmap of ribosome heterogeneity reveals a function for RPL10A in mesoderm production. | Genuth NR, Shi Z, Kunimoto K, Hung V, Xu AF, Kerr CH, Tiu GC, Oses-Prieto JA, Salomon-Shulman REA, Axelrod JD, Burlingame AL, Loh KM, Barna M | Nature communications | 36123354 | Nat Commun | 2022 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/36123354 |
| Long-term ex vivo haematopoietic-stem-cell expansion allows nonconditioned transplantation. | Wilkinson AC, Ishida R, Kikuchi M, Sudo K, Morita M, Crisostomo RV, Yamamoto R, Loh KM, Nakamura Y, Watanabe M, Nakauchi H, Yamazaki S | Nature | 31142833 | Nature | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31142833 |
| Discovery of a pre-vein progenitor that requires VEGF/ERK inhibition to complete vein differentiation. | Ang LT, Zheng SL, Liu KJ, Masaltseva A, Winters J, von Creytz I, Jha SK, Yin Q, Qian C, Xiong X, Dailamy A, Xi E, Alcocer JC, Sorensen DW, She R, Smolyar K, Szumska D, Nornes S, Martin RM, Lesch BJ, Restrepo NK, Sun W, Weissman JS, Lickert H, Porteus MH, Skylar-Scott MA, Mosimann C, Sumanas S, Val S, Prescott JB, Red-Horse K, Loh KM | bioRxiv : the preprint server for biology | 41279810 | bioRxiv | 2025 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/41279810 |
| Improving the safety of human pluripotent stem cell therapies using genome-edited orthogonal safeguards. | Martin RM, Fowler JL, Cromer MK, Lesch BJ, Ponce E, Uchida N, Nishimura T, Porteus MH, Loh KM | Nature communications | 32483127 | Nat Commun | 2020 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/32483127 |
| Generating human artery and vein cells from pluripotent stem cells highlights the arterial tropism of Nipah and Hendra viruses. | Ang LT, Nguyen AT, Liu KJ, Chen A, Xiong X, Curtis M, Martin RM, Raftry BC, Ng CY, Vogel U, Lander A, Lesch BJ, Fowler JL, Holman AR, Chai T, Vijayakumar S, Suchy FP, Nishimura T, Bhadury J, Porteus MH, Nakauchi H, Cheung C, George SC, Red-Horse K, Prescott JB, Loh KM | Cell | 35738284 | Cell | 2022 Jul 7 | https://www.ncbi.nlm.nih.gov/pubmed/35738284 |
| Monolayer platform to generate and purify primordial germ-like cells in vitro provides insights into human germline specification. | Vijayakumar S, Sala R, Kang G, Chen A, Pablo MA, Adebayo AI, Cipriano A, Fowler JL, Gomes DL, Ang LT, Loh KM, Sebastiano V | Nature communications | 37709760 | Nat Commun | 2023 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/37709760 |
| Intra-Leukemic Interferon Signaling Suppresses Expansion and Mediates Chemoresistance in Human AML. | Karigane D, Fan AC, Nishimura T, Kayamori K, Nakauchi Y, Köhnke T, Rangavajhula A, Ediriwickrema A, Benard BA, Thomas R, Zhao F, Stafford M, Suchy FP, Fowler JL, Chao MP, Zhang TY, Loh KM, Nakauchi H, Majeti R | Blood cancer discovery | 41165556 | Blood Cancer Discov | 2026 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/41165556 |
| DNMT3A R882H Is Not Required for Disease Maintenance in Primary Human AML but Is Associated with Increased Leukemia Stem Cell Frequency. | Köhnke T, Karigane D, Hilgart E, Fan AC, Kayamori K, Miyauchi M, Collins CT, Suchy FP, Rangavajhula A, Feng Y, Nakauchi Y, Martinez-Montes E, Fowler JL, Loh KM, Nakauchi H, Koldobskiy MA, Feinberg AP, Majeti R | Cancer discovery | 41263425 | Cancer Discov | 2026 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/41263425 |
| Building human artery and vein endothelial cells from pluripotent stem cells, and enduring mysteries surrounding arteriovenous development. | Loh KM, Ang LT | Seminars in cell & developmental biology | 37393122 | Semin Cell Dev Biol | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/37393122 |
| A Roadmap for Human Liver Differentiation from Pluripotent Stem Cells. | Ang LT, Tan AKY, Autio MI, Goh SH, Choo SH, Lee KL, Tan J, Pan B, Lee JJH, Lum JJ, Lim CYY, Yeo IKX, Wong CJY, Liu M, Oh JLL, Chia CPL, Loh CH, Chen A, Chen Q, Weissman IL, Loh KM, Lim B | Cell reports | 29466743 | Cell Rep | 2018 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/29466743 |
| A critical look: Challenges in differentiating human pluripotent stem cells into desired cell types and organoids. | Fowler JL, Ang LT, Loh KM | Wiley interdisciplinary reviews. Developmental biology | 31746148 | Wiley Interdiscip Rev Dev Biol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/31746148 |
| Antibody Conditioning Enables MHC-Mismatched Hematopoietic Stem Cell Transplants and Organ Graft Tolerance. | George BM, Kao KS, Kwon HS, Velasco BJ, Poyser J, Chen A, Le AC, Chhabra A, Burnett CE, Cajuste D, Hoover M, Loh KM, Shizuru JA, Weissman IL | Cell stem cell | 31204177 | Cell Stem Cell | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31204177 |
| Lineage-tracing hematopoietic stem cell origins in vivo to efficiently make human HLF+ HOXA+ hematopoietic progenitors from pluripotent stem cells. | Fowler JL, Zheng SL, Nguyen A, Chen A, Xiong X, Chai T, Chen JY, Karigane D, Banuelos AM, Niizuma K, Kayamori K, Nishimura T, Cromer MK, Gonzalez-Perez D, Mason C, Liu DD, Yilmaz L, Miquerol L, Porteus MH, Luca VC, Majeti R, Nakauchi H, Red-Horse K, Weissman IL, Ang LT, Loh KM | Developmental cell | 38569552 | Dev Cell | 2024 May 6 | https://www.ncbi.nlm.nih.gov/pubmed/38569552 |
| Dach1 Extends Artery Networks and Protects Against Cardiac Injury. | Raftrey B, Williams M, Rios Coronado PE, Fan X, Chang AH, Zhao M, Roth R, Trimm E, Racelis R, D'Amato G, Phansalkar R, Nguyen A, Chai T, Gonzalez KM, Zhang Y, Ang LT, Loh KM, Bernstein D, Red-Horse K | Circulation research | 34383559 | Circ Res | 2021 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/34383559 |
| Creating artificial signaling gradients to spatially pattern engineered tissues. | Zheng SL, Loh KM | Current opinion in biotechnology | 36182872 | Curr Opin Biotechnol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36182872 |
| Affinity-matured DLL4 ligands as broad-spectrum modulators of Notch signaling. | Gonzalez-Perez D, Das S, Antfolk D, Ahsan HS, Medina E, Dundes CE, Jokhai RT, Egan ED, Blacklow SC, Loh KM, Rodriguez PC, Luca VC | Nature chemical biology | 36050494 | Nat Chem Biol | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36050494 |
| DNMT3A(R882H) Is Not Required for Disease Maintenance in Primary Human AML, but Is Associated With Increased Leukemia Stem Cell Frequency. | Köhnke T, Karigane D, Hilgart E, Fan AC, Kayamori K, Miyauchi M, Collins CT, Suchy FP, Rangavajhula A, Feng Y, Nakauchi Y, Martinez-Montes E, Fowler JL, Loh KM, Nakauchi H, Koldobskiy MA, Feinberg AP, Majeti R | bioRxiv : the preprint server for biology | 39553934 | bioRxiv | 2024 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/39553934 |
| High-Throughput Antibody Neutralization Screening in Massively Parallel Droplet Arrays. | Gutierrez-Gonzalez M, Fahad AS, Delley CL, Chung CY, Jin S, Boyle N, de Souza MO, Pirhanov A, Galvez NMS, França CT, Marglous S, Bhagat E, Vincent D, Neumeier D, Cao Y, Doria-Rose N, Reddy ST, Schmidt AG, Balazs AB, Abate AR, DeKosky BJ | bioRxiv : the preprint server for biology | 39975077 | bioRxiv | 2025 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/39975077 |
| Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses. | Banach BB, Cerutti G, Fahad AS, Shen CH, Oliveira De Souza M, Katsamba PS, Tsybovsky Y, Wang P, Nair MS, Huang Y, Francino-Urdániz IM, Steiner PJ, Gutiérrez-González M, Liu L, López Acevedo SN, Nazzari AF, Wolfe JR, Luo Y, Olia AS, Teng IT, Yu J, Zhou T, Reddem ER, Bimela J, Pan X, Madan B, Laflin AD, Nimrania R, Yuen KY, Whitehead TA, Ho DD, Kwong PD, Shapiro L, DeKosky BJ | Cell reports | 34587480 | Cell Rep | 2021 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/34587480 |
| VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage. | Shen CH, DeKosky BJ, Guo Y, Xu K, Gu Y, Kilam D, Ko SH, Kong R, Liu K, Louder MK, Ou L, Zhang B, Chao CW, Corcoran MM, Feng E, Huang J, Normandin E, O'Dell S, Ransier A, Rawi R, Sastry M, Schmidt SD, Wang S, Wang Y, Chuang GY, Doria-Rose NA, Lin B, Zhou T, Boritz EA, Connors M, Douek DC, Karlsson Hedestam GB, Sheng Z, Shapiro L, Mascola JR, Kwong PD | Cell host & microbe | 32130953 | Cell Host Microbe | 2020 Apr 8 | https://www.ncbi.nlm.nih.gov/pubmed/32130953 |
| Mutational fitness landscapes reveal genetic and structural improvement pathways for a vaccine-elicited HIV-1 broadly neutralizing antibody. | Madan B, Zhang B, Xu K, Chao CW, O'Dell S, Wolfe JR, Chuang GY, Fahad AS, Geng H, Kong R, Louder MK, Nguyen TD, Rawi R, Schön A, Sheng Z, Nimrania R, Wang Y, Zhou T, Lin BC, Doria-Rose NA, Shapiro L, Kwong PD, DeKosky BJ | Proceedings of the National Academy of Sciences of the United States of America | 33649208 | Proc Natl Acad Sci U S A | 2021 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/33649208 |
| Structural basis for accommodation of emerging B.1.351 and B.1.1.7 variants by two potent SARS-CoV-2 neutralizing antibodies. | Cerutti G, Rapp M, Guo Y, Bahna F, Bimela J, Reddem ER, Yu J, Wang P, Liu L, Huang Y, Ho DD, Kwong PD, Sheng Z, Shapiro L | Structure (London, England : 1993) | 34111408 | Structure | 2021 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/34111408 |
| Antibody-dependent enhancement and SARS-CoV-2 vaccines and therapies. | Lee WS, Wheatley AK, Kent SJ, DeKosky BJ | Nature microbiology | 32908214 | Nat Microbiol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32908214 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Acevedo SNL, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | SSRN | 32742241 | SSRN | 2020 Jul 21 | https://www.ncbi.nlm.nih.gov/pubmed/32742241 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Lopez Acevedo SN, Madan B, Oliveira de Souza M, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang LA, Abiona OM, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | Cell reports | 33091382 | Cell Rep | 2020 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/33091382 |
| Ultrasonically-guided flow focusing generates precise emulsion droplets for high-throughput single cell analyses. | Lagerman CE, López Acevedo SN, Fahad AS, Hailemariam AT, Madan B, DeKosky BJ | Journal of bioscience and bioengineering | 30904454 | J Biosci Bioeng | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30904454 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Lopez Acevedo SN, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | bioRxiv : the preprint server for biology | 32596696 | bioRxiv | 2020 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/32596696 |
| Potent SARS-CoV-2 neutralizing antibodies directed against spike N-terminal domain target a single supersite. | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L | Cell host & microbe | 33789084 | Cell Host Microbe | 2021 May 12 | https://www.ncbi.nlm.nih.gov/pubmed/33789084 |
| Neutralizing antibody 5-7 defines a distinct site of vulnerability in SARS-CoV-2 spike N-terminal domain. | Cerutti G, Guo Y, Wang P, Nair MS, Wang M, Huang Y, Yu J, Liu L, Katsamba PS, Bahna F, Reddem ER, Kwong PD, Ho DD, Sheng Z, Shapiro L | Cell reports | 34706271 | Cell Rep | 2021 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34706271 |
| Antibody-guided structure-based vaccines. | Kwong PD, DeKosky BJ, Ulmer JB | Seminars in immunology | 33246736 | Semin Immunol | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33246736 |
| Mapping monoclonal anti-SARS-CoV-2 antibody repertoires against diverse coronavirus antigens. | de Souza MO, Madan B, Teng IT, Huang A, Liu L, Fahad AS, Lopez Acevedo SN, Pan X, Sastry M, Gutierrez-Gonzalez M, Yin MT, Zhou T, Ho DD, Kwong PD, DeKosky BJ | Frontiers in immunology | 36119018 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36119018 |
| Optimized Production of Fc Fusion Proteins by Sortase Enzymatic Ligation. | Apley KD, Laflin AD, Johnson SN, Batrash N, Griffin JD, Berkland CJ, DeKosky BJ | Industrial & engineering chemistry research | 38646185 | Ind Eng Chem Res | 2021 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/38646185 |
| Clonal Variant Analysis of Antibody Engineering Libraries. | Fahad AS, Gutiérrez-Gonzalez MF, Madan B, DeKosky BJ | Cold Spring Harbor protocols | 39586683 | Cold Spring Harb Protoc | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39586683 |
| Yeast Display Reveals Plentiful Mutations That Improve Fusion Peptide Vaccine-Elicited Antibodies Beyond 59% HIV-1 Neutralization Breadth. | França CT, Pletnev S, Madan B, Katsamba PS, McKee K, Morano NC, Zhang B, Bahna F, Bylund T, Lin BC, Louder MK, Mannepalli S, Nimrania R, O'Dell S, Doria-Rose NA, Kwong PD, Shapiro L, Sheng Z, Zhou T, DeKosky BJ | Vaccines | 41295471 | Vaccines (Basel) | 2025 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/41295471 |
| Anti-Malaria Antibody Engineering Broadens Recognition Motifs and Reveals New Homotypic Interactions that Enhance Protective Breadth. | Chun J, Tripathi P, Flores-Garcia Y, Madan B, Lee GA, Fahad AS, Lei H, Teng IT, Hurlburt NK, Flynn BJ, Pancera M, Miura K, Zhou T, Idris AH, Zavala F, Seder RA, Kwong PD, DeKosky BJ | bioRxiv : the preprint server for biology | 41256528 | bioRxiv | 2025 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/41256528 |
| Potent Monoclonal Antibodies Against Circulating Yellow Fever Virus Strains from Donors Immunized with the 17D Vaccine. | de Souza MO, Saunders DRD, Miller A, Fahad AS, Timm MR, Petrova Y, Dowd KA, Madan B, Wolfe J, Normandin E, Henry AR, Laboune F, Misasi J, Lima TM, Alvim RGF, Sanchez EM, Burgomaster KE, Pan X, Vanlandingham DL, Higgs S, Douek DC, Coates EE, Graham BS, Mascola JR, Pierson TC, Castilho LR, Kuhn RJ, Huang YS, DeKosky BJ | The American journal of tropical medicine and hygiene | 41666427 | Am J Trop Med Hyg | 2026 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/41666427 |
| Linking autoantigen properties to mechanisms of immunity. | Griffin JD, Song JY, Sestak JO, DeKosky BJ, Berkland CJ | Advanced drug delivery reviews | 32325104 | Adv Drug Deliv Rev | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32325104 |
| A molecular trap against COVID-19. | DeKosky BJ | Science (New York, N.Y.) | 32883851 | Science | 2020 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/32883851 |
| The Molecular Mechanisms That Underlie the Immune Biology of Anti-drug Antibody Formation Following Treatment With Monoclonal Antibodies. | Vaisman-Mentesh A, Gutierrez-Gonzalez M, DeKosky BJ, Wine Y | Frontiers in immunology | 33013848 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33013848 |
| Tetrameric Fluorescent Antigen Arrays for Single-Step Identification of Antigen-Specific B Cells. | Apley KD, Griffin JD, Johnson SN, Berkland CJ, DeKosky BJ | Journal of visualized experiments : JoVE | 33165322 | J Vis Exp | 2020 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/33165322 |
| Antibody screening at reduced pH enables preferential selection of potently neutralizing antibodies targeting SARS-CoV-2. | Madan B, Reddem ER, Wang P, Casner RG, Nair MS, Huang Y, Fahad AS, de Souza MO, Banach BB, López Acevedo SN, Pan X, Nimrania R, Teng IT, Bahna F, Zhou T, Zhang B, Yin MT, Ho DD, Kwong PD, Shapiro L, DeKosky BJ | AIChE journal. American Institute of Chemical Engineers | 34898670 | AIChE J | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34898670 |
| Quality Control: Chain Pairing Precision and Monitoring of Cross-Sample Contamination: A Method by the AIRR Community. | Chung CY, Gutiérrez-González M, López Acevedo SN, Fahad AS, DeKosky BJ, AIRR Community | Methods in molecular biology (Clifton, N.J.) | 35622337 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35622337 |
| Highly protective antimalarial antibodies via precision library generation and yeast display screening. | Banach BB, Tripathi P, Da Silva Pereira L, Gorman J, Nguyen TD, Dillon M, Fahad AS, Kiyuka PK, Madan B, Wolfe JR, Bonilla B, Flynn B, Francica JR, Hurlburt NK, Kisalu NK, Liu T, Ou L, Rawi R, Schön A, Shen CH, Teng IT, Zhang B, Pancera M, Idris AH, Seder RA, Kwong PD, DeKosky BJ | The Journal of experimental medicine | 35736810 | J Exp Med | 2022 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/35736810 |
| Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site. | Banach BB, Pletnev S, Olia AS, Xu K, Zhang B, Rawi R, Bylund T, Doria-Rose NA, Nguyen TD, Fahad AS, Lee M, Lin BC, Liu T, Louder MK, Madan B, McKee K, O'Dell S, Sastry M, Schön A, Bui N, Shen CH, Wolfe JR, Chuang GY, Mascola JR, Kwong PD, DeKosky BJ | Nature communications | 37989731 | Nat Commun | 2023 Nov 21 | https://www.ncbi.nlm.nih.gov/pubmed/37989731 |
| Bioinformatic Analysis of Natively Paired VH:VL Antibody Repertoires for Antibody Discovery. | Fahad AS, Madan B, DeKosky BJ | Methods in molecular biology (Clifton, N.J.) | 36346608 | Methods Mol Biol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36346608 |
| Molecular probes of spike ectodomain and its subdomains for SARS-CoV-2 variants, Alpha through Omicron. | Teng IT, Nazzari AF, Choe M, Liu T, Oliveira de Souza M, Petrova Y, Tsybovsky Y, Wang S, Zhang B, Artamonov M, Madan B, Huang A, Lopez Acevedo SN, Pan X, Ruckwardt TJ, DeKosky BJ, Mascola JR, Misasi J, Sullivan NJ, Zhou T, Kwong PD | PloS one | 35609088 | PLoS One | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35609088 |
| The adaptive immune receptors in a big data world. | DeKosky BJ | ImmunoHorizons | 42015538 | Immunohorizons | 2026 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/42015538 |
| Functional interrogation and mining of natively paired human V(H):V(L) antibody repertoires. | Wang B, DeKosky BJ, Timm MR, Lee J, Normandin E, Misasi J, Kong R, McDaniel JR, Delidakis G, Leigh KE, Niezold T, Choi CW, Viox EG, Fahad A, Cagigi A, Ploquin A, Leung K, Yang ES, Kong WP, Voss WN, Schmidt AG, Moody MA, Ambrozak DR, Henry AR, Laboune F, Ledgerwood JE, Graham BS, Connors M, Douek DC, Sullivan NJ, Ellington AD, Mascola JR, Georgiou G | Nature biotechnology | 29309060 | Nat Biotechnol | 2018 Feb | https://www.ncbi.nlm.nih.gov/pubmed/29309060 |
| The covalent SNAP tag for protein display quantification and low-pH protein engineering. | Jin W, Madan B, Mussman BK, Hailemariam AT, Fahad AS, Wolfe JR, Kwon YD, Zhang B, Shapiro L, Kwong PD, DeKosky BJ | Journal of biotechnology | 32561362 | J Biotechnol | 2020 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/32561362 |
| Functional Profiling of Antibody Immune Repertoires in Convalescent Zika Virus Disease Patients. | Fahad AS, Timm MR, Madan B, Burgomaster KE, Dowd KA, Normandin E, Gutiérrez-González MF, Pennington JM, De Souza MO, Henry AR, Laboune F, Wang L, Ambrozak DR, Gordon IJ, Douek DC, Ledgerwood JE, Graham BS, Castilho LR, Pierson TC, Mascola JR, DeKosky BJ | Frontiers in immunology | 33732238 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33732238 |
| Immortalization and functional screening of natively paired human T cell receptor repertoires. | Fahad AS, Chung CY, Lopez Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ | Protein engineering, design & selection : PEDS | 35174859 | Protein Eng Des Sel | 2022 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/35174859 |
| Cell activation-based screening of natively paired human T cell receptor repertoires. | Fahad AS, Chung CY, López Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ | Scientific reports | 37198258 | Sci Rep | 2023 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/37198258 |
| Antibody Data Analysis from Diverse Immune Libraries. | Fahad AS, Gutiérrez-Gonzalez MF, Madan B, DeKosky BJ | Cold Spring Harbor protocols | 39586680 | Cold Spring Harb Protoc | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39586680 |
| Beyond Single Clones: High-Throughput Sequencing in Antibody Discovery. | Fahad AS, Gutiérrez-Gonzalez MF, Madan B, DeKosky BJ | Cold Spring Harbor protocols | 39586681 | Cold Spring Harb Protoc | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39586681 |
| Clonal Lineage and Gene Diversity Analysis of Paired Antibody Heavy and Light Chains. | Fahad AS, Gutiérrez-Gonzalez MF, Madan B, DeKosky BJ | Cold Spring Harbor protocols | 39586682 | Cold Spring Harb Protoc | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39586682 |
| Optimized single-cell gates for yeast display screening. | Pan X, de Souza MO, Figueiras FM, Huang A, Banach BB, Wolfe JR, Pirhanov A, Madan B, DeKosky BJ | Protein engineering, design & selection : PEDS | 39667035 | Protein Eng Des Sel | 2025 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/39667035 |
| Transformation of Our Understanding of Breathing Control by Molecular Tools. | Yackle K | Annual review of physiology | 36323001 | Annu Rev Physiol | 2023 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/36323001 |
| Opioids depress breathing through two small brainstem sites. | Bachmutsky I, Wei XP, Kish E, Yackle K | eLife | 32073401 | Elife | 2020 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/32073401 |
| A novel reticular node in the brainstem synchronizes neonatal mouse crying with breathing. | Wei XP, Collie M, Dempsey B, Fortin G, Yackle K | Neuron | 34998469 | Neuron | 2022 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/34998469 |
| ß-arrestin 2 germline knockout does not attenuate opioid respiratory depression. | Bachmutsky I, Wei XP, Durand A, Yackle K | eLife | 34002697 | Elife | 2021 May 18 | https://www.ncbi.nlm.nih.gov/pubmed/34002697 |
| Nematostella vectensis exemplifies the exceptional expansion and diversity of opsins in the eyeless Hexacorallia. | McCulloch KJ, Babonis LS, Liu A, Daly CM, Martindale MQ, Koenig KM | EvoDevo | 37735470 | Evodevo | 2023 Sep 21 | https://www.ncbi.nlm.nih.gov/pubmed/37735470 |
| Highly Efficient Knockout of a Squid Pigmentation Gene. | Crawford K, Diaz Quiroz JF, Koenig KM, Ahuja N, Albertin CB, Rosenthal JJC | Current biology : CB | 32735817 | Curr Biol | 2020 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/32735817 |
| Co-option of the limb patterning program in cephalopod eye development. | Neal S, McCulloch KJ, Napoli FR, Daly CM, Coleman JH, Koenig KM | BMC biology | 34983491 | BMC Biol | 2022 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/34983491 |
| Cephalopod retinal development shows vertebrate-like mechanisms of neurogenesis. | Napoli FR, Daly CM, Neal S, McCulloch KJ, Zaloga AR, Liu A, Koenig KM | Current biology : CB | 36356573 | Curr Biol | 2022 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/36356573 |
| Evolution and development of complex eyes: a celebration of diversity. | Koenig KM, Gross JM | Development (Cambridge, England) | 33051250 | Development | 2020 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/33051250 |
| Krüppel-like factor/specificity protein evolution in the Spiralia and the implications for cephalopod visual system novelties. | McCulloch KJ, Koenig KM | Proceedings. Biological sciences | 33081641 | Proc Biol Sci | 2020 Oct 28 | https://www.ncbi.nlm.nih.gov/pubmed/33081641 |
| Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields. | Agbleke AA, Amitai A, Buenrostro JD, Chakrabarti A, Chu L, Hansen AS, Koenig KM, Labade AS, Liu S, Nozaki T, Ovchinnikov S, Seeber A, Shaban HA, Spille JH, Stephens AD, Su JH, Wadduwage D | Molecular cell | 32768408 | Mol Cell | 2020 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/32768408 |
| Erasable hippocampal neural signatures predict memory discrimination. | Kinsky NR, Orlin DJ, Ruesch EA, Kim B, Coello S, Diba K, Ramirez S | Cell reports | 40057951 | Cell Rep | 2025 Mar 25 | https://www.ncbi.nlm.nih.gov/pubmed/40057951 |
| Hippocampus and amygdala fear memory engrams re-emerge after contextual fear relapse. | Zaki Y, Mau W, Cincotta C, Monasterio A, Odom E, Doucette E, Grella SL, Merfeld E, Shpokayte M, Ramirez S | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 35941286 | Neuropsychopharmacology | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/35941286 |
| Reactivating hippocampal-mediated memories during reconsolidation to disrupt fear. | Grella SL, Fortin AH, Ruesch E, Bladon JH, Reynolds LF, Gross A, Shpokayte M, Cincotta C, Zaki Y, Ramirez S | Nature communications | 36096993 | Nat Commun | 2022 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/36096993 |
| Erasable Hippocampal Neural Signatures Predict Memory Discrimination. | Kinsky NR, Orlin DJ, Ruesch EA, Kim B, Coello S, Diba K, Ramirez S | bioRxiv : the preprint server for biology | 36778486 | bioRxiv | 2024 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/36778486 |
| Route-dependent spatial engram tagging in mouse dentate gyrus. | Wilmerding LK, Kondratyev I, Ramirez S, Hasselmo ME | Neurobiology of learning and memory | 36822466 | Neurobiol Learn Mem | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36822466 |
| Hippocampal Engrams Generate Variable Behavioral Responses and Brain-Wide Network States. | Dorst KE, Senne RA, Diep AH, de Boer AR, Suthard RL, Leblanc H, Ruesch EA, Pyo AY, Skelton S, Carstensen LC, Malmberg S, McKissick OP, Bladon JH, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 38050098 | J Neurosci | 2024 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/38050098 |
| Theta-phase-specific modulation of dentate gyrus memory neurons. | Rahsepar B, Norman JF, Noueihed J, Lahner B, Quick MH, Ghaemi K, Pandya A, Fernandez FR, Ramirez S, White JA | eLife | 37401757 | Elife | 2023 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/37401757 |
| From Engrams to Pathologies of the Brain. | Denny CA, Lebois E, Ramirez S | Frontiers in neural circuits | 28439228 | Front Neural Circuits | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28439228 |
| Chronic activation of fear engrams induces extinction-like behavior in ethanol-exposed mice. | Cincotta C, Murawski NJ, Grella SL, McKissick O, Doucette E, Ramirez S | Hippocampus | 32946184 | Hippocampus | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32946184 |
| Odor modulates the temporal dynamics of fear memory consolidation. | Grella SL, Fortin AH, McKissick O, Leblanc H, Ramirez S | Learning & memory (Cold Spring Harbor, N.Y.) | 32179657 | Learn Mem | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32179657 |
| Chronic Gq activation of ventral hippocampal neurons and astrocytes differentially affects memory and behavior. | Suthard RL, Jellinger AL, Surets M, Shpokayte M, Pyo AY, Buzharsky MD, Senne RA, Dorst K, Leblanc H, Ramirez S | Neurobiology of aging | 36801699 | Neurobiol Aging | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36801699 |
| Hippocampal cells segregate positive and negative engrams. | Shpokayte M, McKissick O, Guan X, Yuan B, Rahsepar B, Fernandez FR, Ruesch E, Grella SL, White JA, Liu XS, Ramirez S | Communications biology | 36163262 | Commun Biol | 2022 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/36163262 |
| Hippocampal fear engrams modulate ethanol-induced maladaptive contextual generalization in mice. | Cincotta C, Ruesch E, Senne R, Ramirez S | Hippocampus | 35950345 | Hippocampus | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/35950345 |
| Ensemble-specific deficit in neuronal intrinsic excitability in aged mice. | Chen L, Francisco TR, Baggetta AM, Zaki Y, Ramirez S, Clem RL, Shuman T, Cai DJ | Neurobiology of aging | 36652783 | Neurobiol Aging | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36652783 |
| Basolateral Amygdala Astrocytes Are Engaged by the Acquisition and Expression of a Contextual Fear Memory. | Suthard RL, Senne RA, Buzharsky MD, Pyo AY, Dorst KE, Diep AH, Cole RH, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 37268419 | J Neurosci | 2023 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/37268419 |
| Linking Social Cognition to Learning and Memory. | Leblanc H, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 33177112 | J Neurosci | 2020 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/33177112 |
| Prelimbic cortex ensembles promote appetitive learning-associated behavior. | Surets M, Caban-Murillo A, Ramirez S | Learning & memory (Cold Spring Harbor, N.Y.) | 38408863 | Learn Mem | 2024 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/38408863 |
| Artificially Enhancing and Suppressing Hippocampus-Mediated Memories. | Chen BK, Murawski NJ, Cincotta C, McKissick O, Finkelstein A, Hamidi AB, Merfeld E, Doucette E, Grella SL, Shpokayte M, Zaki Y, Fortin A, Ramirez S | Current biology : CB | 31130452 | Curr Biol | 2019 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/31130452 |
| Social behavior in mice following chronic optogenetic stimulation of hippocampal engrams. | Doucette E, Merfeld E, Leblanc H, Monasterio A, Cincotta C, Grella SL, Logan J, Ramirez S | Neurobiology of learning and memory | 33164892 | Neurobiol Learn Mem | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33164892 |
| Social reactivation of fear engrams enhances memory recall. | Finkelstein AB, Leblanc H, Cole RH, Gallerani T, Vieira A, Zaki Y, Ramirez S | Proceedings of the National Academy of Sciences of the United States of America | 35286206 | Proc Natl Acad Sci U S A | 2022 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/35286206 |
| Reactivation of memory-associated neurons induces downstream suppression of competing neuronal populations. | Norman JF, Rahsepar B, Vena A, Thunemann M, Devor A, Ramirez S, White JA | Proceedings of the National Academy of Sciences of the United States of America | 40168126 | Proc Natl Acad Sci U S A | 2025 Apr 8 | https://www.ncbi.nlm.nih.gov/pubmed/40168126 |
| Chronic activation of a negative engram induces behavioral and cellular abnormalities. | Jellinger AL, Suthard RL, Yuan B, Surets M, Ruesch EA, Caban AJ, Liu S, Shpokayte M, Ramirez S | eLife | 38990919 | Elife | 2024 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/38990919 |
| Benefits and Challenges in Using Seroprevalence Data to Inform Models for Measles and Rubella Elimination. | Winter AK, Martinez ME, Cutts FT, Moss WJ, Ferrari MJ, McKee A, Lessler J, Hayford K, Wallinga J, Metcalf CJE | The Journal of infectious diseases | 29562334 | J Infect Dis | 2018 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/29562334 |
| Circadian Rhythms in Environmental Health Sciences. | Leung JM, Martinez ME | Current environmental health reports | 32662059 | Curr Environ Health Rep | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32662059 |
| Rescuing Troves of Hidden Ecological Data to Tackle Emerging Mosquito-Borne Diseases. | Rund SSC, Moise IK, Beier JC, Martinez ME | Journal of the American Mosquito Control Association | 31442186 | J Am Mosq Control Assoc | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31442186 |
| Centring sexual and reproductive health and justice in the global COVID-19 response. | Hall KS, Samari G, Garbers S, Casey SE, Diallo DD, Orcutt M, Moresky RT, Martinez ME, McGovern T | Lancet (London, England) | 32278371 | Lancet | 2020 Apr 11 | https://www.ncbi.nlm.nih.gov/pubmed/32278371 |
| Guidelines for Modeling and Reporting Health Effects of Climate Change Mitigation Actions. | Hess JJ, Ranadive N, Boyer C, Aleksandrowicz L, Anenberg SC, Aunan K, Belesova K, Bell ML, Bickersteth S, Bowen K, Burden M, Campbell-Lendrum D, Carlton E, Cissé G, Cohen F, Dai H, Dangour AD, Dasgupta P, Frumkin H, Gong P, Gould RJ, Haines A, Hales S, Hamilton I, Hasegawa T, Hashizume M, Honda Y, Horton DE, Karambelas A, Kim H, Kim SE, Kinney PL, Kone I, Knowlton K, Lelieveld J, Limaye VS, Liu Q, Madaniyazi L, Martinez ME, Mauzerall DL, Milner J, Neville T, Nieuwenhuijsen M, Pachauri S, Perera F, Pineo H, Remais JV, Saari RK, Sampedro J, Scheelbeek P, Schwartz J, Shindell D, Shyamsundar P, Taylor TJ, Tonne C, Van Vuuren D, Wang C, Watts N, West JJ, Wilkinson P, Wood SA, Woodcock J, Woodward A, Xie Y, Zhang Y, Ebi KL | Environmental health perspectives | 33170741 | Environ Health Perspect | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33170741 |
| Social-distancing fatigue: Evidence from real-time crowd-sourced traffic data. | Shearston JA, Martinez ME, Nunez Y, Hilpert M | The Science of the total environment | 34153749 | Sci Total Environ | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34153749 |
| Drivers of Infectious Disease Seasonality: Potential Implications for COVID-19. | Kronfeld-Schor N, Stevenson TJ, Nickbakhsh S, Schernhammer ES, Dopico XC, Dayan T, Martinez M, Helm B | Journal of biological rhythms | 33491541 | J Biol Rhythms | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33491541 |
| Cellular and transcriptional diversity over the course of human lactation. | Nyquist SK, Gao P, Haining TKJ, Retchin MR, Golan Y, Drake RS, Kolb K, Mead BE, Ahituv N, Martinez ME, Shalek AK, Berger B, Goods BA | Proceedings of the National Academy of Sciences of the United States of America | 35377806 | Proc Natl Acad Sci U S A | 2022 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/35377806 |
| Daylight saving time and circadian rhythms in the neuro-endocrine-immune system: impact on cardiovascular health. | Tarquini R, Carbone A, Martinez M, Mazzoccoli G | Internal and emergency medicine | 30488154 | Intern Emerg Med | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30488154 |
| The calendar of epidemics: Seasonal cycles of infectious diseases. | Martinez ME | PLoS pathogens | 30408114 | PLoS Pathog | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/30408114 |
| Socioeconomic disparities in subway use and COVID-19 outcomes in New York City. | Sy KTL, Martinez ME, Rader B, White LF | medRxiv : the preprint server for health sciences | 32511568 | medRxiv | 2020 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/32511568 |
| Socioeconomic Disparities in Subway Use and COVID-19 Outcomes in New York City. | Sy KTL, Martinez ME, Rader B, White LF | American journal of epidemiology | 33372209 | Am J Epidemiol | 2021 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/33372209 |
| Characterizing the modern light environment and its influence on circadian rhythms. | Khodasevich D, Tsui S, Keung D, Skene DJ, Revell V, Martinez ME | Proceedings. Biological sciences | 34284625 | Proc Biol Sci | 2021 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/34284625 |
| Identifying optimal vaccination scenarios to reduce varicella zoster virus transmission and reactivation. | Bakker KM, Eisenberg MC, Woods RJ, Martinez ME | BMC medicine | 36209074 | BMC Med | 2022 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/36209074 |
| Core commitments for field trials of gene drive organisms. | Long KC, Alphey L, Annas GJ, Bloss CS, Campbell KJ, Champer J, Chen CH, Choudhary A, Church GM, Collins JP, Cooper KL, Delborne JA, Edwards OR, Emerson CI, Esvelt K, Evans SW, Friedman RM, Gantz VM, Gould F, Hartley S, Heitman E, Hemingway J, Kanuka H, Kuzma J, Lavery JV, Lee Y, Lorenzen M, Lunshof JE, Marshall JM, Messer PW, Montell C, Oye KA, Palmer MJ, Papathanos PA, Paradkar PN, Piaggio AJ, Rasgon JL, Rašić G, Rudenko L, Saah JR, Scott MJ, Sutton JT, Vorsino AE, Akbari OS | Science (New York, N.Y.) | 33335055 | Science | 2020 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/33335055 |
| Double-tap gene drive uses iterative genome targeting to help overcome resistance alleles. | Bishop AL, López Del Amo V, Okamoto EM, Bodai Z, Komor AC, Gantz VM | Nature communications | 35534475 | Nat Commun | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/35534475 |
| Optimized CRISPR tools and site-directed transgenesis towards gene drive development in Culex quinquefasciatus mosquitoes. | Feng X, López Del Amo V, Mameli E, Lee M, Bishop AL, Perrimon N, Gantz VM | Nature communications | 34017003 | Nat Commun | 2021 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/34017003 |
| Evaluation of Gene Knockouts by CRISPR as Potential Targets for the Genetic Engineering of the Mosquito Culex quinquefasciatus. | Feng X, Kambic L, Nishimoto JHK, Reed FA, Denton JA, Sutton JT, Gantz VM | The CRISPR journal | 34280034 | CRISPR J | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34280034 |
| Small-Molecule Control of Super-Mendelian Inheritance in Gene Drives. | López Del Amo V, Leger BS, Cox KJ, Gill S, Bishop AL, Scanlon GD, Walker JA, Gantz VM, Choudhary A | Cell reports | 32610142 | Cell Rep | 2020 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/32610142 |
| Efficient allelic-drive in Drosophila. | Guichard A, Haque T, Bobik M, Xu XS, Klanseck C, Kushwah RBS, Berni M, Kaduskar B, Gantz VM, Bier E | Nature communications | 30967548 | Nat Commun | 2019 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/30967548 |
| Active Genetic Neutralizing Elements for Halting or Deleting Gene Drives. | Xu XS, Bulger EA, Gantz VM, Klanseck C, Heimler SR, Auradkar A, Bennett JB, Miller LA, Leahy S, Juste SS, Buchman A, Akbari OS, Marshall JM, Bier E | Molecular cell | 32949493 | Mol Cell | 2020 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/32949493 |
| A nickase Cas9 gene-drive system promotes super-Mendelian inheritance in Drosophila. | López Del Amo V, Juste SS, Gantz VM | Cell reports | 35613590 | Cell Rep | 2022 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/35613590 |
| Gene editing technologies and applications for insects. | Gantz VM, Akbari OS | Current opinion in insect science | 30551769 | Curr Opin Insect Sci | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30551769 |
| Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi. | Adolfi A, Gantz VM, Jasinskiene N, Lee HF, Hwang K, Terradas G, Bulger EA, Ramaiah A, Bennett JB, Emerson JJ, Marshall JM, Bier E, James AA | Nature communications | 33144570 | Nat Commun | 2020 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/33144570 |
| Beyond the eye: Kynurenine pathway impairment causes midgut homeostasis dysfunction and survival and reproductive costs in blood-feeding mosquitoes. | Bottino-Rojas V, Ferreira-Almeida I, Nunes RD, Feng X, Pham TB, Kelsey A, Carballar-Lejarazú R, Gantz V, Oliveira PL, James AA | Insect biochemistry and molecular biology | 34999199 | Insect Biochem Mol Biol | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34999199 |
| CopyCatchers are versatile active genetic elements that detect and quantify inter-homolog somatic gene conversion. | Li Z, Marcel N, Devkota S, Auradkar A, Hedrick SM, Gantz VM, Bier E | Nature communications | 33976171 | Nat Commun | 2021 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/33976171 |
| CRISPR/Cas9 and active genetics-based trans-species replacement of the endogenous Drosophila kni-L2 CRM reveals unexpected complexity. | Xu XS, Gantz VM, Siomava N, Bier E | eLife | 29274230 | Elife | 2017 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/29274230 |
| Super-Mendelian inheritance mediated by CRISPR-Cas9 in the female mouse germline. | Grunwald HA, Gantz VM, Poplawski G, Xu XS, Bier E, Cooper KL | Nature | 30675057 | Nature | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30675057 |
| Assessment of a Split Homing Based Gene Drive for Efficient Knockout of Multiple Genes. | Kandul NP, Liu J, Buchman A, Gantz VM, Bier E, Akbari OS | G3 (Bethesda, Md.) | 31882406 | G3 (Bethesda) | 2020 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/31882406 |
| A transcomplementing gene drive provides a flexible platform for laboratory investigation and potential field deployment. | López Del Amo V, Bishop AL, Sánchez C HM, Bennett JB, Feng X, Marshall JM, Bier E, Gantz VM | Nature communications | 31953404 | Nat Commun | 2020 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/31953404 |
| Targeting double-strand break indel byproducts with secondary guide RNAs improves Cas9 HDR-mediated genome editing efficiencies. | Bodai Z, Bishop AL, Gantz VM, Komor AC | Nature communications | 35534455 | Nat Commun | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/35534455 |
| CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. | Harvey-Samuel T, Feng X, Okamoto EM, Purusothaman DK, Leftwich PT, Alphey L, Gantz VM | bioRxiv : the preprint server for biology | 37398284 | bioRxiv | 2023 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/37398284 |
| CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. | Harvey-Samuel T, Feng X, Okamoto EM, Purusothaman DK, Leftwich PT, Alphey L, Gantz VM | Nature communications | 37985762 | Nat Commun | 2023 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/37985762 |
| Survival of tissue-resident memory T cells requires exogenous lipid uptake and metabolism. | Pan Y, Tian T, Park CO, Lofftus SY, Mei S, Liu X, Luo C, O'Malley JT, Gehad A, Teague JE, Divito SJ, Fuhlbrigge R, Puigserver P, Krueger JG, Hotamisligil GS, Clark RA, Kupper TS | Nature | 28219080 | Nature | 2017 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/28219080 |
| Implementation of Genetic Screening to Prevent Severe Cutaneous Adverse Drug Reactions Is Crucial-Rebuttal From the Devil's Antagonist-Reply. | Divito SJ | JAMA dermatology | 31851296 | JAMA Dermatol | 2020 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/31851296 |
| Skin Resident Memory T Cells May Play Critical Role in Delayed-Type Drug Hypersensitivity Reactions. | Schunkert EM, Shah PN, Divito SJ | Frontiers in immunology | 34497600 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34497600 |
| Method of Generating Tolerogenic Maturation-Resistant Dendritic Cells and Testing for Their Immune-Regulatory Functions In Vivo in the Context of Transplantation. | Divito SJ, Morelli AE | Methods in molecular biology (Clifton, N.J.) | 30649773 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30649773 |
| High-throughput sequencing of the T cell receptor β gene identifies aggressive early-stage mycosis fungoides. | de Masson A, O'Malley JT, Elco CP, Garcia SS, Divito SJ, Lowry EL, Tawa M, Fisher DC, Devlin PM, Teague JE, Leboeuf NR, Kirsch IR, Robins H, Clark RA, Kupper TS | Science translational medicine | 29743350 | Sci Transl Med | 2018 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/29743350 |
| Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis: Associations, Outcomes, and Pathobiology-Thirty Years of Progress but Still Much to Be Done. | Stern RS, Divito SJ | The Journal of investigative dermatology | 28411832 | J Invest Dermatol | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28411832 |
| Peripheral host T cells survive hematopoietic stem cell transplantation and promote graft-versus-host disease. | Divito SJ, Aasebø AT, Matos TR, Hsieh PC, Collin M, Elco CP, O'Malley JT, Bækkevold ES, Reims H, Gedde-Dahl T, Hagerstrom M, Hilaire J, Lian JW, Milford EL, Pinkus GS, Ho VT, Soiffer RJ, Kim HT, Mihm MC, Ritz J, Guleria I, Cutler CS, Clark RA, Jahnsen FL, Kupper TS | The Journal of clinical investigation | 32516138 | J Clin Invest | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32516138 |
| SJS/TEN 2019: From science to translation. | Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC | Journal of dermatological science | 32192826 | J Dermatol Sci | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32192826 |
| Histologic features of graft-versus-host disease-associated angiomatosis: Insights into pathophysiology and treatment. | Li DJ, Romar GA, Hsieh PC, Wells M, Foreman RK, Lian CG, Divito SJ | Journal of the American Academy of Dermatology | 31923444 | J Am Acad Dermatol | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31923444 |
| HIV-Associated Immune Dysregulation in the Skin: A Crucible for Exaggerated Inflammation and Hypersensitivity. | Chimbetete T, Buck C, Choshi P, Selim R, Pedretti S, Divito SJ, Phillips EJ, Lehloenya R, Peter J | The Journal of investigative dermatology | 36549954 | J Invest Dermatol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36549954 |
| Corrigendum to 'SJS/TEN 2019: From science to translation' [J. Dermatol. Sci. 98/1 (2020) 2-12]. | Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC | Journal of dermatological science | 34763988 | J Dermatol Sci | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34763988 |
| Systemic and skin-limited delayed-type drug hypersensitivity reactions associate with distinct resident and recruited T cell subsets. | Shah PN, Romar GA, Manukyan A, Ko WC, Hsieh PC, Velasquez GA, Schunkert EM, Fu X, Guleria I, Bronson RT, Wei K, Waldman AH, Vleugels FR, Liang MG, Giobbie-Hurder A, Mostaghimi A, Schmidt BA, Barrera V, Foreman RK, Garber M, Divito SJ | The Journal of clinical investigation | 39042477 | J Clin Invest | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/39042477 |
| Assessment of Need for Improved Identification of a Culprit Drug in Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis. | Li DJ, Velasquez GA, Romar GA, Schunkert EM, Foreman RK, Divito SJ | JAMA dermatology | 37342052 | JAMA Dermatol | 2023 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/37342052 |
| Cross-Sectional Study Evaluating Skin, Hair, Nail, and Bone Disease in Patients with Focal Dermal Hypoplasia. | Gunasekera NS, Divito JK, Kupper TS, Huang JT, Divito SJ | Pediatric dermatology | 28025844 | Pediatr Dermatol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28025844 |
| Updates and Insights in the Diagnosis and Management of DRESS Syndrome. | Schunkert EM, Divito SJ | Current dermatology reports | 34777921 | Curr Dermatol Rep | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34777921 |
| Screening HLA to Prevent Severe Drug Reactions-A Devil's Advocate Perspective. | Divito SJ | JAMA dermatology | 30916720 | JAMA Dermatol | 2019 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/30916720 |
| Physical and mental health impact of Stevens-Johnson syndrome/toxic epidermal necrolysis and post-hospital discharge care: Identifying practice gaps. | Coromilas AJ, Divito SJ, Phillips EJ, Micheletti RG | JAAD international | 36941915 | JAAD Int | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36941915 |
| JAK inhibition may prevent drug hypersensitivity reactions. | Hua X, Shah PN, Velasquez GA, Sidky L, Romar GA, Boer LW, Hickerson N, Cui TQ, Repetto F, Waldman A, Liang MG, Marcoux JP, Sellars M, Barrera V, Schmidt BA, Mostaghimi A, Foreman RK, Lian CG, Divito SJ | JCI insight | 41948930 | JCI Insight | 2026 Apr 8 | https://www.ncbi.nlm.nih.gov/pubmed/41948930 |
| Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis-Coordinating Research Priorities to Move the Field Forward. | Phillips EJ, Bouchard CS, Divito SJ | JAMA dermatology | 35353140 | JAMA Dermatol | 2022 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/35353140 |
| Advances in the Pathomechanisms of Delayed Drug Hypersensitivity. | Wang CW, Divito SJ, Chung WH, Hung SI | Immunology and allergy clinics of North America | 35469623 | Immunol Allergy Clin North Am | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35469623 |
| IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy. | Zhou T, Damsky W, Weizman OE, McGeary MK, Hartmann KP, Rosen CE, Fischer S, Jackson R, Flavell RA, Wang J, Sanmamed MF, Bosenberg MW, Ring AM | Nature | 32581358 | Nature | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32581358 |
| Yeast surface display platform for rapid discovery of conformationally selective nanobodies. | McMahon C, Baier AS, Pascolutti R, Wegrecki M, Zheng S, Ong JX, Erlandson SC, Hilger D, Rasmussen SGF, Ring AM, Manglik A, Kruse AC | Nature structural & molecular biology | 29434346 | Nat Struct Mol Biol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29434346 |
| Diverse Functional Autoantibodies in Patients with COVID-19. | Wang EY, Mao T, Klein J, Dai Y, Huck JD, Liu F, Zheng NS, Zhou T, Israelow B, Wong P, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Team, Cruz CD, Farhadian SF, Schulz WL, Grubaugh ND, Ko AI, Iwasaki A, Ring AM | medRxiv : the preprint server for health sciences | 33330894 | medRxiv | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/33330894 |
| Diverse functional autoantibodies in patients with COVID-19. | Wang EY, Mao T, Klein J, Dai Y, Huck JD, Jaycox JR, Liu F, Zhou T, Israelow B, Wong P, Coppi A, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Zheng NS, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Team, Dela Cruz C, Farhadian SF, Schulz WL, Ma S, Grubaugh ND, Ko AI, Iwasaki A, Ring AM | Nature | 34010947 | Nature | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34010947 |
| High-throughput identification of autoantibodies that target the human exoproteome. | Wang EY, Dai Y, Rosen CE, Schmitt MM, Dong MX, Ferré EMN, Liu F, Yang Y, González-Hernández JA, Meffre E, Hinchcliff M, Koumpouras F, Lionakis MS, Ring AM | Cell reports methods | 35360706 | Cell Rep Methods | 2022 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/35360706 |
| IL-18BP mediates the balance between protective and pathological immune responses to Toxoplasma gondii. | Clark JT, Weizman OE, Aldridge DL, Shallberg LA, Eberhard J, Lanzar Z, Wasche D, Huck JD, Zhou T, Ring AM, Hunter CA | Cell reports | 36827187 | Cell Rep | 2023 Mar 28 | https://www.ncbi.nlm.nih.gov/pubmed/36827187 |
| Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses. | Clark LE, Mahmutovic S, Raymond DD, Dilanyan T, Koma T, Manning JT, Shankar S, Levis SC, Briggiler AM, Enria DA, Wucherpfennig KW, Paessler S, Abraham J | Nature communications | 29760382 | Nat Commun | 2018 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/29760382 |
| Transferrin receptor targeting by de novo sheet extension. | Sahtoe DD, Coscia A, Mustafaoglu N, Miller LM, Olal D, Vulovic I, Yu TY, Goreshnik I, Lin YR, Clark L, Busch F, Stewart L, Wysocki VH, Ingber DE, Abraham J, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 33879614 | Proc Natl Acad Sci U S A | 2021 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/33879614 |
| Molecular organization of the New World arenavirus spike glycoprotein complex. | Mann CJ, Yang P, Olal D, Fan X, Smith KN, Clark LE, Krammer F, Bian Y, Abraham J | Nature microbiology | 40781447 | Nat Microbiol | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40781447 |
| Translating across kingdoms: target of rapamycin promotes protein synthesis through conserved and divergent pathways in plants. | Scarpin MR, Simmons CH, Brunkard JO | Journal of experimental botany | 35770874 | J Exp Bot | 2022 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/35770874 |
| TOR coordinates nucleotide availability with ribosome biogenesis in plants. | Busche M, Scarpin MR, Hnasko R, Brunkard JO | The Plant cell | 33793860 | Plant Cell | 2021 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/33793860 |
| Exaptive Evolution of Target of Rapamycin Signaling in Multicellular Eukaryotes. | Brunkard JO | Developmental cell | 32649861 | Dev Cell | 2020 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/32649861 |
| Plant Cell-Cell Transport via Plasmodesmata Is Regulated by Light and the Circadian Clock. | Brunkard JO, Zambryski P | Plant physiology | 31601643 | Plant Physiol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31601643 |
| Terminal ear 1 and phytochromes B1/B2 regulate maize leaf initiation independently. | Busche M, Hake S, Brunkard JO | Genetics | 36495288 | Genetics | 2023 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/36495288 |
| LncRNA gets into the balancing act. | Li F, Brunkard JO, Baker B | Cell host & microbe | 35952640 | Cell Host Microbe | 2022 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/35952640 |
| An updated nomenclature for plant ribosomal protein genes. | Scarpin MR, Busche M, Martinez RE, Harper LC, Reiser L, Szakonyi D, Merchante C, Lan T, Xiong W, Mo B, Tang G, Chen X, Bailey-Serres J, Browning KS, Brunkard JO | The Plant cell | 36423343 | Plant Cell | 2023 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/36423343 |
| Light regulates alternative splicing outcomes via the TOR kinase pathway. | Riegler S, Servi L, Scarpin MR, Godoy Herz MA, Kubaczka MG, Venhuizen P, Meyer C, Brunkard JO, Kalyna M, Barta A, Petrillo E | Cell reports | 34496244 | Cell Rep | 2021 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/34496244 |
| DRMY1 promotes robust morphogenesis in Arabidopsis by sustaining the translation of cytokinin-signaling inhibitor proteins. | Kong S, Zhu M, Scarpin MR, Pan D, Jia L, Martinez RE, Alamos S, Vadde BVL, Garcia HG, Qian SB, Brunkard JO, Roeder AHK | Developmental cell | 39305905 | Dev Cell | 2024 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/39305905 |
| Editorial overview: Cell biology. | Gallagher KL, Brunkard JO | Current opinion in plant biology | 33342469 | Curr Opin Plant Biol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33342469 |
| Cytokinins Stimulate Plasmodesmatal Transport in Leaves. | Horner W, Brunkard JO | Frontiers in plant science | 34135930 | Front Plant Sci | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34135930 |
| The Second Site Modifier, Sympathy for the ligule, Encodes a Homolog of Arabidopsis ENHANCED DISEASE RESISTANCE4 and Rescues the Liguleless narrow Maize Mutant. | Anderson A, St Aubin B, Abraham-Juárez MJ, Leiboff S, Shen Z, Briggs S, Brunkard JO, Hake S | The Plant cell | 31217219 | Plant Cell | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31217219 |
| Amino Acid Signaling for TOR in Eukaryotes: Sensors, Transducers, and a Sustainable Agricultural fuTORe. | Lutt N, Brunkard JO | Biomolecules | 35327579 | Biomolecules | 2022 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/35327579 |
| Stress management: how NOD and LGN coordinate growth-defence tradeoffs in maize. | Pierroz G | The Plant journal : for cell and molecular biology | 36415090 | Plant J | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36415090 |
| ConducTORs of a Signaling Symphony: Metabolic and Hormone Responses Converge on TOR and EIN2 in plants. | Brunkard JO, Chang C, Mayer BJ, Meyer C, Sheen J | Faculty reviews | 35719129 | Fac Rev | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35719129 |
| Liguleless narrow and narrow odd dwarf act in overlapping pathways to regulate maize development and metabolism. | Abraham-Juárez MJ, Busche M, Anderson AA, Lunde C, Winders J, Christensen SA, Hunter CT, Hake S, Brunkard JO | The Plant journal : for cell and molecular biology | 36164819 | Plant J | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36164819 |
| Ties that bind: the integration of plastid signalling pathways in plant cell metabolism. | Brunkard JO, Burch-Smith TM | Essays in biochemistry | 29563221 | Essays Biochem | 2018 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/29563221 |
| A Two-Headed Monster to Avert Disaster: HBS1/SKI7 Is Alternatively Spliced to Build Eukaryotic RNA Surveillance Complexes. | Brunkard JO, Baker B | Frontiers in plant science | 30258456 | Front Plant Sci | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30258456 |
| Parallel global profiling of plant TOR dynamics reveals a conserved role for LARP1 in translation. | Scarpin MR, Leiboff S, Brunkard JO | eLife | 33054972 | Elife | 2020 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/33054972 |
| TOR dynamically regulates plant cell-cell transport. | Brunkard JO, Xu M, Scarpin MR, Chatterjee S, Shemyakina EA, Goodman HM, Zambryski P | Proceedings of the National Academy of Sciences of the United States of America | 32051250 | Proc Natl Acad Sci U S A | 2020 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/32051250 |
| Chloroplast redox state changes mark cell-to-cell signaling in the hypersensitive response. | Lukan T, Županič A, Mahkovec Povalej T, Brunkard JO, Kmetič M, Juteršek M, Baebler Š, Gruden K | The New phytologist | 35946378 | New Phytol | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35946378 |
| Quantifying Plasmodesmatal Transport with an Improved GFP Movement Assay. | Horner W, Brunkard JO | Methods in molecular biology (Clifton, N.J.) | 35349148 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35349148 |
| Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data. | Yang Y, Gu Q, Zhang Y, Sasaki T, Crivello J, O'Neill RJ, Gilbert DM, Ma J | Cell systems | 29936186 | Cell Syst | 2018 Aug 22 | https://www.ncbi.nlm.nih.gov/pubmed/29936186 |
| Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer. | Akdemir KC, Le VT, Chandran S, Li Y, Verhaak RG, Beroukhim R, Campbell PJ, Chin L, Dixon JR, Futreal PA, PCAWG Structural Variation Working Group, PCAWG Consortium | Nature genetics | 32024999 | Nat Genet | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32024999 |
| 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma. | Okonechnikov K, Camgöz A, Chapman O, Wani S, Park DE, Hübner JM, Chakraborty A, Pagadala M, Bump R, Chandran S, Kraft K, Acuna-Hidalgo R, Reid D, Sikkink K, Mauermann M, Juarez EF, Jenseit A, Robinson JT, Pajtler KW, Milde T, Jäger N, Fiesel P, Morgan L, Sridhar S, Coufal NG, Levy M, Malicki D, Hobbs C, Kingsmore S, Nahas S, Snuderl M, Crawford J, Wechsler-Reya RJ, Davidson TB, Cotter J, Michaiel G, Fleischhack G, Mundlos S, Schmitt A, Carter H, Michealraj KA, Kumar SA, Taylor MD, Rich J, Buchholz F, Mesirov JP, Pfister SM, Ay F, Dixon JR, Kool M, Chavez L | Nature communications | 37085539 | Nat Commun | 2023 Apr 21 | https://www.ncbi.nlm.nih.gov/pubmed/37085539 |
| Integrative detection and analysis of structural variation in cancer genomes. | Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F | Nature genetics | 30202056 | Nat Genet | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30202056 |
| Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity. | Liu Z, Lee DS, Liang Y, Zheng Y, Dixon JR | Nature communications | 37932264 | Nat Commun | 2023 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/37932264 |
| Dynamic regulation of histone modifications and long-range chromosomal interactions during postmitotic transcriptional reactivation. | Kang H, Shokhirev MN, Xu Z, Chandran S, Dixon JR, Hetzer MW | Genes & development | 32499403 | Genes Dev | 2020 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/32499403 |
| Genome reconstruction and haplotype phasing using chromosome conformation capture methodologies. | Xu Z, Dixon JR | Briefings in functional genomics | 31875884 | Brief Funct Genomics | 2020 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/31875884 |
| Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure. | Akdemir KC, Le VT, Kim JM, Killcoyne S, King DA, Lin YP, Tian Y, Inoue A, Amin SB, Robinson FS, Nimmakayalu M, Herrera RE, Lynn EJ, Chan K, Seth S, Klimczak LJ, Gerstung M, Gordenin DA, O'Brien J, Li L, Deribe YL, Verhaak RG, Campbell PJ, Fitzgerald R, Morrison AJ, Dixon JR, Andrew Futreal P | Nature genetics | 33020667 | Nat Genet | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33020667 |
| Reduced synaptic activity and dysregulated extracellular matrix pathways in midbrain neurons from Parkinson's disease patients. | Stern S, Lau S, Manole A, Rosh I, Percia MM, Ben Ezer R, Shokhirev MN, Qiu F, Schafer S, Mansour AA, Mangan KP, Stern T, Ofer P, Stern Y, Diniz Mendes AP, Djamus J, Moore LR, Nayak R, Laufer SH, Aicher A, Rhee A, Wong TL, Nguyen T, Linker SB, Winner B, Freitas BC, Jones E, Sagi I, Bardy C, Brice A, Winkler J, Marchetto MC, Gage FH | NPJ Parkinson's disease | 35948563 | NPJ Parkinsons Dis | 2022 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/35948563 |
| Foxp3 Orchestrates Reorganization of Chromatin Architecture to Establish Regulatory T Cell Identity. | Liu Z, Lee DS, Liang Y, Zheng Y, Dixon JR | bioRxiv : the preprint server for biology | 36865315 | bioRxiv | 2023 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/36865315 |
| Simultaneous profiling of 3D genome structure and DNA methylation in single human cells. | Lee DS, Luo C, Zhou J, Chandran S, Rivkin A, Bartlett A, Nery JR, Fitzpatrick C, O'Connor C, Dixon JR, Ecker JR | Nature methods | 31501549 | Nat Methods | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31501549 |
| Coming full circle: On the origin and evolution of the looping model for enhancer-promoter communication. | Popay TM, Dixon JR | The Journal of biological chemistry | 35691341 | J Biol Chem | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35691341 |
| Structural variants drive context-dependent oncogene activation in cancer. | Xu Z, Lee DS, Chandran S, Le VT, Bump R, Yasis J, Dallarda S, Marcotte S, Clock B, Haghani N, Cho CY, Akdemir KC, Tyndale S, Futreal PA, McVicker G, Wahl GM, Dixon JR | Nature | 36477537 | Nature | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36477537 |
| Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF. | Yang Y, Zhang Y, Ren B, Dixon JR, Ma J | Cell systems | 31229558 | Cell Syst | 2019 Jun 26 | https://www.ncbi.nlm.nih.gov/pubmed/31229558 |
| Incorporation of a nucleoside analog maps genome repair sites in postmitotic human neurons. | Reid DA, Reed PJ, Schlachetzki JCM, Nitulescu II, Chou G, Tsui EC, Jones JR, Chandran S, Lu AT, McClain CA, Ooi JH, Wang TW, Lana AJ, Linker SB, Ricciardulli AS, Lau S, Schafer ST, Horvath S, Dixon JR, Hah N, Glass CK, Gage FH | Science (New York, N.Y.) | 33795458 | Science | 2021 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/33795458 |
| Analysis of Hi-C Data for Discovery of Structural Variations in Cancer. | Song F, Xu J, Dixon J, Yue F | Methods in molecular biology (Clifton, N.J.) | 34415534 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/34415534 |
| Developmental competence and antigen switch frequency can be uncoupled in Trypanosoma brucei. | McWilliam KR, Ivens A, Morrison LJ, Mugnier MR, Matthews KR | Proceedings of the National Academy of Sciences of the United States of America | 31636179 | Proc Natl Acad Sci U S A | 2019 Nov 5 | https://www.ncbi.nlm.nih.gov/pubmed/31636179 |
| VSGs Expressed during Natural T. b. gambiense Infection Exhibit Extensive Sequence Divergence and a Subspecies-Specific Bias towards Type B N-Terminal Domains. | So J, Sudlow S, Sayeed A, Grudda T, Deborggraeve S, Ngoyi DM, Desamber DK, Wickstead B, Lejon V, Mugnier MR | mBio | 36354333 | mBio | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36354333 |
| Trypanosoma brucei. | Romero-Meza G, Mugnier MR | Trends in parasitology | 31757771 | Trends Parasitol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31757771 |
| Thinking outside the blood: Perspectives on tissue-resident Trypanosoma brucei. | Crilly NP, Mugnier MR | PLoS pathogens | 34529724 | PLoS Pathog | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34529724 |
| DNA damage drives antigen diversification through mosaic Variant Surface Glycoprotein (VSG) formation in Trypanosoma brucei. | Smith JE, Wang KJ, Kennedy EM, Hakim JMC, So J, Beaver AK, Magesh A, Gilligan-Steinberg SD, Zheng J, Zhang B, Moorthy DN, Akin EH, Mwakibete L, Mugnier MR | bioRxiv : the preprint server for biology | 39253459 | bioRxiv | 2024 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/39253459 |
| Emerging challenges in understanding trypanosome antigenic variation. | McCulloch R, Cobbold CA, Figueiredo L, Jackson A, Morrison LJ, Mugnier MR, Papavasiliou N, Schnaufer A, Matthews K | Emerging topics in life sciences | 30271884 | Emerg Top Life Sci | 2017 Dec 22 | https://www.ncbi.nlm.nih.gov/pubmed/30271884 |
| Tissue spaces are reservoirs of antigenic diversity for Trypanosoma brucei. | Beaver AK, Keneskhanova Z, Cosentino RO, Weiss BL, Awuoche EO, Smallenberger GM, Buenconsejo GY, Crilly NP, Smith JE, Hakim JMC, Zhang B, Bobb B, Rijo-Ferreira F, Figueiredo LM, Aksoy S, Siegel TN, Mugnier MR | Nature | 39478231 | Nature | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39478231 |
| DNA damage drives antigen diversification in Trypanosoma brucei. | Smith JE, Wang KJ, Kennedy EM, Munday JC, Singer L, Hakim JMC, So J, Beaver AK, Magesh A, Gilligan-Steinberg SD, Zheng J, Zhang B, Moorthy DN, Brown ZE, Akin EH, Mwakibete L, McCulloch R, Mugnier MR | Nature | 41951731 | Nature | 2026 Jun | https://www.ncbi.nlm.nih.gov/pubmed/41951731 |
| Evaluating the impact and equity of a tobacco-free pharmacy law on retailer density in New York City neighbourhoods. | Giovenco DP, Spillane TE, Mauro CM, Hernández D | Tobacco control | 30135112 | Tob Control | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30135112 |
| Cigar Sales in Convenience Stores in the US, 2009-2020. | Delnevo CD, Miller Lo E, Giovenco DP, Cornacchione Ross J, Hrywna M, Strasser AA | JAMA | 34932088 | JAMA | 2021 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/34932088 |
| Multi-level drivers of tobacco use and purchasing behaviors during COVID-19 "lockdown": A qualitative study in the United States. | Giovenco DP, Spillane TE, Maggi RM, Lee EY, Philbin MM | The International journal on drug policy | 33662811 | Int J Drug Policy | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33662811 |
| Bayesian Inference: Understanding Experimental Data With Informative Hypotheses. | Baig SA | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 32610347 | Nicotine Tob Res | 2020 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/32610347 |
| Medical cannabis laws and medical and non-medical prescription stimulant use among a nationally representative sample of US Adults: Examining the role of sexual identity and gender. | Philbin MM, Mauro PM, Greene ER, LaBossier NJ, Giovenco DP, Martins SS | The International journal on drug policy | 32717704 | Int J Drug Policy | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32717704 |
| Neighborhood Differences in Alternative Tobacco Product Availability and Advertising in New York City: Implications for Health Disparities. | Giovenco DP, Spillane TE, Merizier JM | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 30452712 | Nicotine Tob Res | 2019 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/30452712 |
| Changes in the availability and promotion of non-cigarette tobacco products near high schools in New Jersey, USA. | Giovenco DP, Ackerman C, Hrywna M, Delnevo CD | Tobacco control | 28798262 | Tob Control | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28798262 |
| Different Smokes for Different Folks? E-Cigarettes and Tobacco Disparities. | Giovenco DP | American journal of public health | 31390250 | Am J Public Health | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31390250 |
| Predictive Validity of Tobacco Product Advertising and Retail Availability. | Giovenco DP, Spillane TE, Delnevo CD | Tobacco regulatory science | 31824986 | Tob Regul Sci | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31824986 |
| Impact of menthol capsule cigarettes on menthol and non-menthol cigarette consumption in the USA, 2008-2020. | Delnevo CD, Giovenco DP, Villanti AC | Tobacco control | 35537814 | Tob Control | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35537814 |
| White Owl launches sweepstakes to promote new dessert-flavoured cigar. | Safi Z, Ganz O, Giovenco DP, Delnevo C, Lewis MJ | Tobacco control | 34031226 | Tob Control | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34031226 |
| Natural American Spirit launches 'Sky', the brand's first commercial organic cigarette with a charcoal filter. | Pearson J, Giovenco DP, Lewis MJ, Moran M, Ganz O | Tobacco control | 34593613 | Tob Control | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/34593613 |
| IQOS print magazine advertising characteristics and reach before and after FDA authorisation as a modified risk tobacco product. | Ganz O, Strasser AA, Giovenco DP, Audrain-McGovern J, Cappella JN, Safi Z, Tan ASL, Talbot EM, Delnevo CD | Tobacco control | 36958825 | Tob Control | 2024 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/36958825 |
| Cigarillo sales in legalized marijuana markets in the U.S. | Giovenco DP, Spillane TE, Mauro CM, Martins SS | Drug and alcohol dependence | 29500953 | Drug Alcohol Depend | 2018 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/29500953 |
| Prevalence of population smoking cessation by electronic cigarette use status in a national sample of recent smokers. | Giovenco DP, Delnevo CD | Addictive behaviors | 28802179 | Addict Behav | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28802179 |
| Smoke Shop Misclassification May Cloud Studies on Vape Shop Density. | Giovenco DP | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 28605478 | Nicotine Tob Res | 2018 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/28605478 |
| Changes in Pack Features Among Top-Selling Cigarettes in the U.S., 2018 and 2021. | Giovenco DP, Ganz O, Spillane TE, Easter AG, Wackowski OA, Villanti AC, Strasser AA, Delnevo CD | American journal of preventive medicine | 37295659 | Am J Prev Med | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37295659 |
| Blowing the lid off: an analysis of interior cigarette pack features and marketing strategies. | Giovenco DP, Spillane TE, Lewis MJ | Tobacco control | 32675249 | Tob Control | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32675249 |
| Behavioral heterogeneity among cigarette and e-cigarette dual-users and associations with future tobacco use: Findings from the Population Assessment of Tobacco and Health Study. | Baig SA, Giovenco DP | Addictive behaviors | 32028096 | Addict Behav | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32028096 |
| Improving Efficiency in Mobile Data Collection for Place-Based Public Health Research. | Giovenco DP, Spillane TE | American journal of public health | 30785801 | Am J Public Health | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30785801 |
| Characteristics of storefront tobacco advertisements and differences by product type: A content analysis of retailers in New York City, USA. | Giovenco DP, Spillane TE, Wong BA, Wackowski OA | Preventive medicine | 30930262 | Prev Med | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30930262 |
| Assessment of Menthol and Nonmenthol Cigarette Consumption in the US, 2000 to 2018. | Delnevo CD, Giovenco DP, Villanti AC | JAMA network open | 32766798 | JAMA Netw Open | 2020 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/32766798 |
| Demographic and psychological moderators of the relationship between neighborhood cigarette advertising and current smoking in New York City. | Giovenco DP, Spillane TE, Baig SA, Dumas SE, Dongchung TY, Sanderson M, Sisti JS, Farley SM, Jasek JP, Seligson AL | Health & place | 32947186 | Health Place | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32947186 |
| Content analysis of instagram posts by leading cannabis vaporizer brands. | Spillane TE, Wong BA, Giovenco DP | Drug and alcohol dependence | 33109462 | Drug Alcohol Depend | 2021 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/33109462 |
| Cross-promotion of nicotine pouches by leading cigarette brands. | Talbot EM, Giovenco DP, Grana R, Hrywna M, Ganz O | Tobacco control | 34670870 | Tob Control | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34670870 |
| Commentary on Weinberger et al.: Tobacco and cannabis policies as drivers of nicotine and cannabis co-use - research and measurement implications to move the field forward. | Philbin MM, Giovenco DP, Mauro PM | Addiction (Abingdon, England) | 35362234 | Addiction | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35362234 |
| Internalizing problems are associated with initiation and past 30-Day use of flavored tobacco products. | Ganz O, Cohn AM, Goodwin RD, Giovenco DP, Wackowski OA, Talbot EM, Delnevo CD | Addictive behaviors | 34763300 | Addict Behav | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34763300 |
| Packaging Characteristics of Top-Selling Cigars in the United States, 2018. | Giovenco DP, Spillane TE, Talbot E, Wackowski OA, Audrain-McGovern J, Ganz O, Delnevo CD | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 35287167 | Nicotine Tob Res | 2022 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/35287167 |
| Camel Crush pack inserts cross-promote Vuse menthol e-cigarettes ahead of impending menthol cigarette ban. | Giovenco DP, Ganz O, Chen-Sankey J, Delnevo CD | Tobacco control | 37702704 | Tob Control | 2024 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/37702704 |
| Is nicotine vaping associated with subsequent initiation of cannabis or other substances from adolescence into young adulthood? | Perlmutter AS, Keyes KM, Giovenco D, Martins SS, Rudolph KE | American journal of epidemiology | 38988255 | Am J Epidemiol | 2025 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/38988255 |
| Systemic Immunity Is Required for Effective Cancer Immunotherapy. | Spitzer MH, Carmi Y, Reticker-Flynn NE, Kwek SS, Madhireddy D, Martins MM, Gherardini PF, Prestwood TR, Chabon J, Bendall SC, Fong L, Nolan GP, Engleman EG | Cell | 28111070 | Cell | 2017 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/28111070 |
| T Cells Instruct Immune Checkpoint Inhibitor Therapy Resistance in Tumors Responsive to IL1 and TNFα Inflammation. | Cho NW, Guldberg SM, Nabet BY, Yu JZ, Kim EJ, Hiam-Galvez KJ, Yee JL, DeBarge R, Tenvooren I, Ashitey NA, Lynce F, Dillon DA, Rosenbluth JM, Spitzer MH | Cancer immunology research | 39404741 | Cancer Immunol Res | 2025 Feb 3 | https://www.ncbi.nlm.nih.gov/pubmed/39404741 |
| A cytotoxic-skewed immune set point predicts low neutralizing antibody levels after Zika virus infection. | McCarthy EE, Odorizzi PM, Lutz E, Smullin CP, Tenvooren I, Stone M, Simmons G, Hunt PW, Feeney ME, Norris PJ, Busch MP, Spitzer MH, Rutishauser RL | Cell reports | 35584677 | Cell Rep | 2022 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/35584677 |
| Pre-existing immune status associated with response to combination of sipuleucel-T and ipilimumab in patients with metastatic castration-resistant prostate cancer. | Sinha M, Zhang L, Subudhi S, Chen B, Marquez J, Liu EV, Allaire K, Cheung A, Ng S, Nguyen C, Friedlander TW, Aggarwal R, Spitzer M, Allison JP, Small EJ, Sharma P, Fong L | Journal for immunotherapy of cancer | 33986125 | J Immunother Cancer | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33986125 |
| Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy. | Hartmann FJ, Babdor J, Gherardini PF, Amir ED, Jones K, Sahaf B, Marquez DM, Krutzik P, O'Donnell E, Sigal N, Maecker HT, Meyer E, Spitzer MH, Bendall SC | Cell reports | 31315057 | Cell Rep | 2019 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/31315057 |
| Depletion of microbiome-derived molecules in the host using Clostridium genetics. | Guo CJ, Allen BM, Hiam KJ, Dodd D, Van Treuren W, Higginbottom S, Nagashima K, Fischer CR, Sonnenburg JL, Spitzer MH, Fischbach MA | Science (New York, N.Y.) | 31831639 | Science | 2019 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/31831639 |
| Scalable Conjugation and Characterization of Immunoglobulins with Stable Mass Isotope Reporters for Single-Cell Mass Cytometry Analysis. | Hartmann FJ, Simonds EF, Vivanco N, Bruce T, Borges L, Nolan GP, Spitzer MH, Bendall SC | Methods in molecular biology (Clifton, N.J.) | 31077099 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31077099 |
| Dynamic CD8(+) T cell responses to cancer immunotherapy in human regional lymph nodes are disrupted in metastatic lymph nodes. | Rahim MK, Okholm TLH, Jones KB, McCarthy EE, Liu CC, Yee JL, Tamaki SJ, Marquez DM, Tenvooren I, Wai K, Cheung A, Davidson BR, Johri V, Samad B, O'Gorman WE, Krummel MF, van Zante A, Combes AJ, Angelo M, Fong L, Algazi AP, Ha P, Spitzer MH | Cell | 36931243 | Cell | 2023 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/36931243 |
| Single-cell analysis by mass cytometry reveals metabolic states of early-activated CD8(+) T cells during the primary immune response. | Levine LS, Hiam-Galvez KJ, Marquez DM, Tenvooren I, Madden MZ, Contreras DC, Dahunsi DO, Irish JM, Oluwole OO, Rathmell JC, Spitzer MH | Immunity | 33705706 | Immunity | 2021 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/33705706 |
| Systemic immunity in cancer. | Hiam-Galvez KJ, Allen BM, Spitzer MH | Nature reviews. Cancer | 33837297 | Nat Rev Cancer | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33837297 |
| ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network. | Atallah MB, Tandon V, Hiam KJ, Boyce H, Hori M, Atallah W, Spitzer MH, Engleman E, Mallick P | BMC bioinformatics | 32778050 | BMC Bioinformatics | 2020 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/32778050 |
| Engineered Tumor-Targeted T Cells Mediate Enhanced Anti-Tumor Efficacy Both Directly and through Activation of the Endogenous Immune System. | Avanzi MP, Yeku O, Li X, Wijewarnasuriya DP, van Leeuwen DG, Cheung K, Park H, Purdon TJ, Daniyan AF, Spitzer MH, Brentjens RJ | Cell reports | 29768210 | Cell Rep | 2018 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/29768210 |
| A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites. | Dodd D, Spitzer MH, Van Treuren W, Merrill BD, Hryckowian AJ, Higginbottom SK, Le A, Cowan TM, Nolan GP, Fischbach MA, Sonnenburg JL | Nature | 29168502 | Nature | 2017 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/29168502 |
| Systemic dysfunction and plasticity of the immune macroenvironment in cancer models. | Allen BM, Hiam KJ, Burnett CE, Venida A, DeBarge R, Tenvooren I, Marquez DM, Cho NW, Carmi Y, Spitzer MH | Nature medicine | 32451499 | Nat Med | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32451499 |
| SCITO-seq: single-cell combinatorial indexed cytometry sequencing. | Hwang B, Lee DS, Tamaki W, Sun Y, Ogorodnikov A, Hartoularos GC, Winters A, Yeung BZ, Nazor KL, Song YS, Chow ED, Spitzer MH, Ye CJ | Nature methods | 34354295 | Nat Methods | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34354295 |
| A Comprehensive Atlas of Immunological Differences Between Humans, Mice, and Non-Human Primates. | Bjornson-Hooper ZB, Fragiadakis GK, Spitzer MH, Chen H, Madhireddy D, Hu K, Lundsten K, McIlwain DR, Nolan GP | Frontiers in immunology | 35359965 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35359965 |
| Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types. | Fragiadakis GK, Bjornson-Hooper ZB, Madhireddy D, Sachs K, Chen H, McIlwain DR, Spitzer MH, Bendall SC, Nolan GP | Frontiers in immunology | 35419006 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35419006 |
| Functional CRISPR dissection of gene networks controlling human regulatory T cell identity. | Schumann K, Raju SS, Lauber M, Kolb S, Shifrut E, Cortez JT, Skartsis N, Nguyen VQ, Woo JM, Roth TL, Yu R, Nguyen MLT, Simeonov DR, Nguyen DN, Targ S, Gate RE, Tang Q, Bluestone JA, Spitzer MH, Ye CJ, Marson A | Nature immunology | 32989329 | Nat Immunol | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32989329 |
| Autocrine TGFβ Is a Survival Factor for Monocytes and Drives Immunosuppressive Lineage Commitment. | Gonzalez-Junca A, Driscoll KE, Pellicciotta I, Du S, Lo CH, Roy R, Parry R, Tenvooren I, Marquez DM, Spitzer MH, Barcellos-Hoff MH | Cancer immunology research | 30538091 | Cancer Immunol Res | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30538091 |
| Cellular architecture of human brain metastases. | Gonzalez H, Mei W, Robles I, Hagerling C, Allen BM, Hauge Okholm TL, Nanjaraj A, Verbeek T, Kalavacherla S, van Gogh M, Georgiou S, Daras M, Phillips JJ, Spitzer MH, Roose JP, Werb Z | Cell | 35063085 | Cell | 2022 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/35063085 |
| Familial melanoma-astrocytoma syndrome: synchronous diffuse astrocytoma and pleomorphic xanthoastrocytoma in a patient with germline CDKN2A/B deletion and a significant family history. | Chan AK, Han SJ, Choy W, Beleford D, Aghi MK, Berger MS, Shieh JT, Bollen AW, Perry A, Phillips JJ, Butowski N, Solomon DA | Clinical neuropathology | 28699883 | Clin Neuropathol | 2017 Sep/Oct | https://www.ncbi.nlm.nih.gov/pubmed/28699883 |
| Deep sequencing of WNT-activated medulloblastomas reveals secondary SHH pathway activation. | Iorgulescu JB, Van Ziffle J, Stevers M, Grenert JP, Bastian BC, Chavez L, Stichel D, Buchhalter I, Samuel D, Nicolaides T, Banerjee A, Mueller S, Gupta N, Tihan T, Bollen AW, Northcott PA, Kool M, Pfister S, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 29435664 | Acta Neuropathol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29435664 |
| The genetic landscape of ganglioglioma. | Pekmezci M, Villanueva-Meyer JE, Goode B, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Chamyan G, Maher OM, Khatib Z, Kleinschmidt-DeMasters BK, Samuel D, Mueller S, Banerjee A, Clarke JL, Cooney T, Torkildson J, Gupta N, Theodosopoulos P, Chang EF, Berger M, Bollen AW, Perry A, Tihan T, Solomon DA | Acta neuropathologica communications | 29880043 | Acta Neuropathol Commun | 2018 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/29880043 |
| Multinodular and vacuolating neuronal tumor of the cerebrum is a clonal neoplasm defined by genetic alterations that activate the MAP kinase signaling pathway. | Pekmezci M, Stevers M, Phillips JJ, Van Ziffle J, Bastian BC, Tsankova NM, Kleinschmidt-DeMasters BK, Rosenblum MK, Tihan T, Perry A, Solomon DA | Acta neuropathologica | 29428973 | Acta Neuropathol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29428973 |
| STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection. | Ding S, Diep J, Feng N, Ren L, Li B, Ooi YS, Wang X, Brulois KF, Yasukawa LL, Li X, Kuo CJ, Solomon DA, Carette JE, Greenberg HB | Nature communications | 29662124 | Nat Commun | 2018 Apr 16 | https://www.ncbi.nlm.nih.gov/pubmed/29662124 |
| IDH1 mutation can be present in diffuse astrocytomas and giant cell glioblastomas of young children under 10 years of age. | Ferris SP, Goode B, Joseph NM, Kline CN, Samuel D, Gupta N, Bollen A, Perry A, Mueller S, Solomon DA | Acta neuropathologica | 27161253 | Acta Neuropathol | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27161253 |
| Activating NRF1-BRAF and ATG7-RAF1 fusions in anaplastic pleomorphic xanthoastrocytoma without BRAF p.V600E mutation. | Phillips JJ, Gong H, Chen K, Joseph NM, van Ziffle J, Jin LW, Bastian BC, Bollen AW, Perry A, Nicolaides T, Solomon DA, Shieh JT | Acta neuropathologica | 27624885 | Acta Neuropathol | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27624885 |
| Oligodendrogliomas, IDH-mutant and 1p/19q-codeleted, arising during teenage years often lack TERT promoter mutation that is typical of their adult counterparts. | Lee J, Putnam AR, Chesier SH, Banerjee A, Raffel C, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Perry A, Solomon DA | Acta neuropathologica communications | 30231927 | Acta Neuropathol Commun | 2018 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/30231927 |
| Primary intracranial sarcomas with DICER1 mutation often contain prominent eosinophilic cytoplasmic globules and can occur in the setting of neurofibromatosis type 1. | Lee JC, Villanueva-Meyer JE, Ferris SP, Sloan EA, Hofmann JW, Hattab EM, Williams BJ, Guo H, Torkildson J, Florez A, Van Ziffle J, Onodera C, Grenert JP, Cho SJ, Horvai AE, Jones DTW, Pfister SM, Koelsche C, von Deimling A, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 30649606 | Acta Neuropathol | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30649606 |
| A review of recently described genetic alterations in central nervous system tumors. | Lucas CG, Solomon DA, Perry A | Human pathology | 31678207 | Hum Pathol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31678207 |
| High-grade neuroepithelial tumor with BCOR exon 15 internal tandem duplication-a comprehensive clinical, radiographic, pathologic, and genomic analysis. | Ferris SP, Velazquez Vega J, Aboian M, Lee JC, Van Ziffle J, Onodera C, Grenert JP, Saunders T, Chen YY, Banerjee A, Kline CN, Gupta N, Raffel C, Samuel D, Ruiz-Diaz I, Magaki S, Wilson D, Neltner J, Al-Hajri Z, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Schniederjan M, Cha S, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31104347 | Brain Pathol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31104347 |
| EWSR1-BEND2 fusion defines an epigenetically distinct subtype of astroblastoma. | Lucas CG, Gupta R, Wu J, Shah K, Ravindranathan A, Barreto J, Gener M, Ginn KF, Prall OWJ, Xu H, Kee D, Ko HS, Yaqoob N, Zia N, Florez A, Cha S, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 34825267 | Acta Neuropathol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34825267 |
| Clinicopathologic and molecular features of intracranial desmoplastic small round cell tumors. | Lee JC, Villanueva-Meyer JE, Ferris SP, Cham EM, Zucker J, Cooney T, Gilani A, Kleinschmidt-DeMasters BK, Trembath D, Mafra M, Chiang J, Ellison DW, Cho SJ, Horvai AE, Van Ziffle J, Onodera C, Devine P, Grenert JP, de Voijs CMA, van Blokland WTM, de Leng WWJ, Ploegmakers MJ, Flucke U, Pekmezci M, Bollen AW, Tihan T, Koelsche C, von Deimling A, Wesseling P, Solomon DA, Perry A | Brain pathology (Zurich, Switzerland) | 31837177 | Brain Pathol | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31837177 |
| Targeted Next-Generation Sequencing Reveals Divergent Clonal Evolution in Components of Composite Pleomorphic Xanthoastrocytoma-Ganglioglioma. | Lucas CG, Davidson CJ, Alashari M, Putnam AR, Whipple NS, Bruggers CS, Mendez JS, Cheshier SH, Walker JB, Ramani B, Cadwell CR, Sullivan DV, Lu R, Mirchia K, Van Ziffle J, Devine P, Goldschmidt E, Hervey-Jumper SL, Gupta N, Oberheim Bush NA, Raleigh DR, Bollen A, Tihan T, Pekmezci M, Solomon DA, Phillips JJ, Perry A | Journal of neuropathology and experimental neurology | 35703914 | J Neuropathol Exp Neurol | 2022 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/35703914 |
| Iris and Ciliary Body Melanocytomas Are Defined by Solitary GNAQ Mutation Without Additional Oncogenic Alterations. | Solomon DA, Ramani B, Eiger-Moscovich M, Milman T, Uludag G, Crawford JB, Phan I, Char DH, Shields CL, Eagle RC Jr, Bastian BC, Bloomer MM, Pekmezci M | Ophthalmology | 35835335 | Ophthalmology | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35835335 |
| Intratumor and informatic heterogeneity influence meningioma molecular classification. | Vasudevan HN, Choudhury A, Hilz S, Villanueva-Meyer JE, Chen WC, Lucas CG, Braunstein SE, Oberheim Bush NA, Butowski N, Pekmezci M, McDermott MW, Perry A, Solomon DA, Magill ST, Raleigh DR | Acta neuropathologica | 35759011 | Acta Neuropathol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35759011 |
| Multiplatform molecular analyses refine classification of gliomas arising in patients with neurofibromatosis type 1. | Lucas CG, Sloan EA, Gupta R, Wu J, Pratt D, Vasudevan HN, Ravindranathan A, Barreto J, Williams EA, Shai A, Whipple NS, Bruggers CS, Maher O, Nabors B, Rodriguez M, Samuel D, Brown M, Carmichael J, Lu R, Mirchia K, Sullivan DV, Pekmezci M, Tihan T, Bollen AW, Perry A, Banerjee A, Mueller S, Gupta N, Hervey-Jumper SL, Oberheim Bush NA, Daras M, Taylor JW, Butowski NA, de Groot J, Clarke JL, Raleigh DR, Costello JF, Phillips JJ, Reddy AT, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 35945463 | Acta Neuropathol | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/35945463 |
| Genetic and epigenetic characterization of posterior pituitary tumors. | Schmid S, Solomon DA, Perez E, Thieme A, Kleinschmidt-DeMasters BK, Giannini C, Reinhardt A, Asa SL, Mete O, Stichel D, Siewert C, Dittmayer C, Hasselblatt M, Paulus W, Nagel C, Harter PN, Schittenhelm J, Honegger J, Rushing E, Coras R, Pfister SM, Buslei R, Koch A, Perry A, Jones DTW, von Deimling A, Capper D, Lopes MB | Acta neuropathologica | 34661724 | Acta Neuropathol | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34661724 |
| Loss of p16 expression is a sensitive marker of CDKN2A homozygous deletion in malignant meningiomas. | Tang V, Lu R, Mirchia K, Van Ziffle J, Devine P, Lee J, Phillips JJ, Perry A, Raleigh DR, Lucas CG, Solomon DA | Acta neuropathologica | 36723772 | Acta Neuropathol | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36723772 |
| Addressing preferred specimen orientation in single-particle cryo-EM through tilting. | Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D | Nature methods | 28671674 | Nat Methods | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28671674 |
| Challenges and opportunities in cryo-EM single-particle analysis. | Lyumkis D | The Journal of biological chemistry | 30804214 | J Biol Chem | 2019 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/30804214 |
| Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. | Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N | Cell | 31348888 | Cell | 2019 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/31348888 |
| Structural Basis for the Activation of IKK1/α. | Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G | Cell reports | 27851956 | Cell Rep | 2016 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/27851956 |
| Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d. | Zhang C, Konermann S, Brideau NJ, Lotfy P, Wu X, Novick SJ, Strutzenberg T, Griffin PR, Hsu PD, Lyumkis D | Cell | 30241607 | Cell | 2018 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/30241607 |
| Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant. | Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D | Nature communications | 30194371 | Nat Commun | 2018 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/30194371 |
| Non-uniformity of projection distributions attenuates resolution in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 31525386 | Prog Biophys Mol Biol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31525386 |
| SrmB Rescues Trapped Ribosome Assembly Intermediates. | Rabuck-Gibbons JN, Popova AM, Greene EM, Cervantes CF, Lyumkis D, Williamson JR | Journal of molecular biology | 31877323 | J Mol Biol | 2020 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/31877323 |
| Tools for visualizing and analyzing Fourier space sampling in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 32645314 | Prog Biophys Mol Biol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32645314 |
| Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease. | Polley S, Lyumkis D, Horton NC | Structure (London, England : 1993) | 31447289 | Structure | 2019 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/31447289 |
| Modular Assembly of the Bacterial Large Ribosomal Subunit. | Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR | Cell | 27912064 | Cell | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27912064 |
| Evaluating Local and Directional Resolution of Cryo-EM Density Maps. | Aiyer S, Zhang C, Baldwin PR, Lyumkis D | Methods in molecular biology (Clifton, N.J.) | 33368004 | Methods Mol Biol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33368004 |
| Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates. | Rabuck-Gibbons JN, Lyumkis D, Williamson JR | Structure (London, England : 1993) | 34990602 | Structure | 2022 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/34990602 |
| Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification. | Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D | Ultramicroscopy | 30528101 | Ultramicroscopy | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30528101 |
| Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd. | Brugger C, Zhang C, Suhanovsky MM, Kim DD, Sinclair AN, Lyumkis D, Deaconescu AM | Nature communications | 32719356 | Nat Commun | 2020 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/32719356 |
| Relative Initial Weight Is Associated with Improved Survival without Altering Tumor Latency in a Translational Rat Model of Diethylnitrosamine-Induced Hepatocellular Carcinoma and Transarterial Embolization. | Kiefer RM, Hunt SJ, Pulido S, Pickup S, Furth EE, Soulen MC, Nadolski GJ, Gade TP | Journal of vascular and interventional radiology : JVIR | 28495453 | J Vasc Interv Radiol | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28495453 |
| Functional Genetic Screening Enables Theranostic Molecular Imaging in Cancer. | Perkons NR, Johnson O, Pilla G, Profka E, Mercadante M, Ackerman D, Gade TPF | Clinical cancer research : an official journal of the American Association for Cancer Research | 32499234 | Clin Cancer Res | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32499234 |
| Tissue metabolic profiling shows that saccharopine accumulates during renal ischemic-reperfusion injury, while kynurenine and itaconate accumulate in renal allograft rejection. | Beier UH, Hartung EA, Concors S, Hernandez PT, Wang Z, Perry C, Baur JA, Denburg MR, Hancock WW, Gade TP, Levine MH | Metabolomics : Official journal of the Metabolomic Society | 32367163 | Metabolomics | 2020 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/32367163 |
| Pharmacodynamics and pharmacokinetics of hyperpolarized [1-(13) C]-pyruvate in a translational oncologic model. | Perkons NR, Johnson O, Pilla G, Gade TPF | NMR in biomedicine | 33772910 | NMR Biomed | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33772910 |
| Radial Flow Perfusion Enables Real-Time Profiling of Cellular Metabolism at Low Oxygen Levels with Hyperpolarized (13)C NMR Spectroscopy. | Mancuso A, Pourfathi M, Kiefer RM, Noji MC, Siddiqui S, Profka E, Weber CN, Pantel A, Kadlecek SJ, Rizi R, Gade TPF | Metabolites | 34564392 | Metabolites | 2021 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/34564392 |
| Hyperpolarized Metabolic Imaging Detects Latent Hepatocellular Carcinoma Domains Surviving Locoregional Therapy. | Perkons NR, Kiefer RM, Noji MC, Pourfathi M, Ackerman D, Siddiqui S, Tischfield D, Profka E, Johnson O, Pickup S, Mancuso A, Pantel A, Denburg MR, Nadolski GJ, Hunt SJ, Furth EE, Kadlecek S, Gade TPF | Hepatology (Baltimore, Md.) | 31553806 | Hepatology | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31553806 |
| Computational pipeline for estimation of small-molecule T1 relaxation times. | Wildenberg JC, Perkons NR, Pilla G, Kadlecek S, Gade TPF | Journal of magnetic resonance (San Diego, Calif. : 1997) | 32339979 | J Magn Reson | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32339979 |
| Establishment of hepatocellular carcinoma patient-derived xenografts from image-guided percutaneous biopsies. | Tischfield DJ, Ackerman D, Noji M, Chen JX, Johnson O, Perkons NR, Nadolski GJ, Hunt SJ, Soulen MC, Furth EE, Gade TP | Scientific reports | 31332214 | Sci Rep | 2019 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/31332214 |
| Angiographic Atlas of the Visceral Vascular Anatomy in Translational Rat Models. | Shi D, Kiefer RM, Nishiofuku H, Cortes A, Nadolski GJ, Hunt SJ, Avritscher R, Gade TPF | Journal of vascular and interventional radiology : JVIR | 31202678 | J Vasc Interv Radiol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31202678 |
| Extensive protein dosage compensation in aneuploid human cancers. | Schukken KM, Sheltzer JM | Genome research | 35701073 | Genome Res | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35701073 |
| Chromosomal instability accelerates the evolution of resistance to anti-cancer therapies. | Lukow DA, Sausville EL, Suri P, Chunduri NK, Wieland A, Leu J, Smith JC, Girish V, Kumar AA, Kendall J, Wang Z, Storchova Z, Sheltzer JM | Developmental cell | 34352222 | Dev Cell | 2021 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/34352222 |
| Off-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials. | Lin A, Giuliano CJ, Palladino A, John KM, Abramowicz C, Yuan ML, Sausville EL, Lukow DA, Liu L, Chait AR, Galluzzo ZC, Tucker C, Sheltzer JM | Science translational medicine | 31511426 | Sci Transl Med | 2019 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/31511426 |
| Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract. | Smith JC, Sausville EL, Girish V, Yuan ML, Vasudevan A, John KM, Sheltzer JM | Developmental cell | 32425701 | Dev Cell | 2020 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/32425701 |
| Generating Single Cell-Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. | Giuliano CJ, Lin A, Girish V, Sheltzer JM | Current protocols in molecular biology | 31503414 | Curr Protoc Mol Biol | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31503414 |
| Discovering and validating cancer genetic dependencies: approaches and pitfalls. | Lin A, Sheltzer JM | Nature reviews. Genetics | 32561862 | Nat Rev Genet | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32561862 |
| Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. | Vasudevan A, Baruah PS, Smith JC, Wang Z, Sayles NM, Andrews P, Kendall J, Leu J, Chunduri NK, Levy D, Wigler M, Storchová Z, Sheltzer JM | Developmental cell | 32097652 | Dev Cell | 2020 Feb 24 | https://www.ncbi.nlm.nih.gov/pubmed/32097652 |
| A CRISPR Competition Assay to Identify Cancer Genetic Dependencies. | Girish V, Sheltzer JM | Bio-protocol | 33659353 | Bio Protoc | 2020 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/33659353 |
| Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. | Hoffmann M, Hofmann-Winkler H, Smith JC, Krüger N, Arora P, Sørensen LK, Søgaard OS, Hasselstrøm JB, Winkler M, Hempel T, Raich L, Olsson S, Danov O, Jonigk D, Yamazoe T, Yamatsuta K, Mizuno H, Ludwig S, Noé F, Kjolby M, Braun A, Sheltzer JM, Pöhlmann S | EBioMedicine | 33676899 | EBioMedicine | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33676899 |
| CRISPR/Cas9 mutagenesis invalidates a putative cancer dependency targeted in on-going clinical trials. | Lin A, Giuliano CJ, Sayles NM, Sheltzer JM | eLife | 28337968 | Elife | 2017 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/28337968 |
| Genome-wide identification and analysis of prognostic features in human cancers. | Smith JC, Sheltzer JM | Cell reports | 35354049 | Cell Rep | 2022 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/35354049 |
| Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. | Hoffmann M, Hofmann-Winkler H, Smith JC, Krüger N, Sørensen LK, Søgaard OS, Hasselstrøm JB, Winkler M, Hempel T, Raich L, Olsson S, Yamazoe T, Yamatsuta K, Mizuno H, Ludwig S, Noé F, Sheltzer JM, Kjolby M, Pöhlmann S | bioRxiv : the preprint server for biology | 32793911 | bioRxiv | 2020 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/32793911 |
| MELK expression correlates with tumor mitotic activity but is not required for cancer growth. | Giuliano CJ, Lin A, Smith JC, Palladino AC, Sheltzer JM | eLife | 29417930 | Elife | 2018 Feb 8 | https://www.ncbi.nlm.nih.gov/pubmed/29417930 |
| Systematic identification of mutations and copy number alterations associated with cancer patient prognosis. | Smith JC, Sheltzer JM | eLife | 30526857 | Elife | 2018 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/30526857 |
| Combustible and Electronic Cigarette Exposures Increase ACE2 Activity and SARS-CoV-2 Spike Binding. | Ghosh A, Girish V, Yuan ML, Coakley RD, Wrennall JA, Alexis NE, Sausville EL, Vasudevan A, Chait AR, Sheltzer JM, Tarran R | American journal of respiratory and critical care medicine | 34748720 | Am J Respir Crit Care Med | 2022 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/34748720 |
| Content analysis of targeted food and beverage advertisements in a Chinese-American neighbourhood. | Bragg MA, Pageot YK, Hernández-Villarreal O, Kaplan SA, Kwon SC | Public health nutrition | 28587693 | Public Health Nutr | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28587693 |
| Food Industry Donations to Academic Programs: A Cross-Sectional Examination of the Extent of Publicly Available Data. | A Bragg M, Elbel B, Nestle M | International journal of environmental research and public health | 32138233 | Int J Environ Res Public Health | 2020 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/32138233 |
| Examining the Relationship between Youth-Targeted Food Marketing Expenditures and the Demographics of Social Media Followers. | Rummo PE, Cassidy O, Wells I, Coffino JA, Bragg MA | International journal of environmental research and public health | 32138342 | Int J Environ Res Public Health | 2020 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/32138342 |
| Evaluating the influence of racially targeted food and beverage advertisements on Black and White adolescents' perceptions and preferences. | Bragg MA, Miller AN, Kalkstein DA, Elbel B, Roberto CA | Appetite | 31055011 | Appetite | 2019 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/31055011 |
| Waste generation and carbon emissions of a hospital kitchen in the US: Potential for waste diversion and carbon reductions. | Thiel CL, Park S, Musicus AA, Agins J, Gan J, Held J, Horrocks A, Bragg MA | PloS one | 33730046 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33730046 |
| National Trends in Social Media Food Marketing Expenditures: 2020-2021. | Bragg MA, Albert SL, Cassidy OL, Powell LM, Rummo PE | AJPM focus | 41488601 | AJPM Focus | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41488601 |
| Popular Music Celebrity Endorsements in Food and Nonalcoholic Beverage Marketing. | Bragg MA, Miller AN, Elizee J, Dighe S, Elbel BD | Pediatrics | 27273712 | Pediatrics | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27273712 |
| Fast food, beverage, and snack brands on social media in the United States: An examination of marketing techniques utilized in 2000 brand posts. | Bragg MA, Pageot YK, Amico A, Miller AN, Gasbarre A, Rummo PE, Elbel B | Pediatric obesity | 31875654 | Pediatr Obes | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/31875654 |
| Brands with personalities - good for businesses, but bad for public health? A content analysis of how food and beverage brands personify themselves on Twitter. | Greene T, Seet C, Rodríguez Barrio A, McIntyre D, Kelly B, Bragg MA | Public health nutrition | 33820575 | Public Health Nutr | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33820575 |
| Child Social Media Influencers and Unhealthy Food Product Placement. | Alruwaily A, Mangold C, Greene T, Arshonsky J, Cassidy O, Pomeranz JL, Bragg M | Pediatrics | 33106342 | Pediatrics | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33106342 |
| How Food Marketing on Instagram Shapes Adolescents' Food Preferences: Online Randomized Trial. | Bragg M, Lutfeali S, Greene T, Osterman J, Dalton M | Journal of medical Internet research | 34677136 | J Med Internet Res | 2021 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/34677136 |
| Food industry donations to patient advocacy organisations focussed on non-communicable diseases. | Del Giudice IM, Tsai KA, Arshonsky J, Bond S, Bragg MA | Public health nutrition | 36305342 | Public Health Nutr | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36305342 |
| COVID-Washing in US Food and Beverage Marketing on Twitter: Content Analysis. | Tsai KA, Cassidy O, Arshonsky J, Bond S, Del Giudice IM, Bragg MA | JMIR formative research | 36040957 | JMIR Form Res | 2022 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/36040957 |
| Latinx and White Adolescents' Preferences for Latinx-Targeted Celebrity and Noncelebrity Food Advertisements: Experimental Survey Study. | Bragg MA, Lutfeali S, Gabler DG, Quintana Licona DA, Harris JL | Journal of medical Internet research | 39889276 | J Med Internet Res | 2025 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/39889276 |
| Marketing Food and Beverages to Youth Through Sports. | Bragg MA, Roberto CA, Harris JL, Brownell KD, Elbel B | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 29111226 | J Adolesc Health | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29111226 |
| Comparison of online marketing techniques on food and beverage companies' websites in six countries. | Bragg MA, Eby M, Arshonsky J, Bragg A, Ogedegbe G | Globalization and health | 29073900 | Global Health | 2017 Oct 26 | https://www.ncbi.nlm.nih.gov/pubmed/29073900 |
| Social Media Accounts of Food and Beverage Brands Have Disproportionately More Black and Hispanic Followers than White Followers. | Rummo PE, Arshonsky JH, Sharkey AL, Cassidy OL, Bragg MA | Health equity | 34235366 | Health Equity | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34235366 |
| A Qualitative Analysis of Black and White Adolescents' Perceptions of and Responses to Racially Targeted Food and Drink Commercials on Television. | Miller A, Cassidy O, Greene T, Arshonsky J, Albert SL, Bragg MA | International journal of environmental research and public health | 34770078 | Int J Environ Res Public Health | 2021 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/34770078 |
| COVID-19-Related Changes to Drug-Selling Networks and Their Effects on People Who Use Illicit Opioids. | Frank D, Krawczyk N, Arshonsky J, Bragg MA, Friedman SR, Bunting AM | Journal of studies on alcohol and drugs | 36971722 | J Stud Alcohol Drugs | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36971722 |
| A content analysis of outdoor non-alcoholic beverage advertisements in Ghana. | Bragg MA, Hardoby T, Pandit NG, Raji YR, Ogedegbe G | BMJ open | 28588104 | BMJ Open | 2017 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/28588104 |
| Sports Sponsorships of Food and Nonalcoholic Beverages. | Bragg MA, Miller AN, Roberto CA, Sam R, Sarda V, Harris JL, Brownell KD | Pediatrics | 29581181 | Pediatrics | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29581181 |
| An online randomized trial of healthy default beverages and unhealthy beverage restrictions on children's menus. | Rummo PE, Moran AJ, Musicus AA, Roberto CA, Bragg MA | Preventive medicine reports | 33318891 | Prev Med Rep | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33318891 |
| Understanding the Extent of Adolescents' Willingness to Engage With Food and Beverage Companies' Instagram Accounts: Experimental Survey Study. | Lutfeali S, Ward T, Greene T, Arshonsky J, Seixas A, Dalton M, Bragg MA | JMIR public health and surveillance | 33107836 | JMIR Public Health Surveill | 2020 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/33107836 |
| Comparing McDonald's food marketing practices on official Instagram accounts across 15 countries. | Cassidy O, Shin HW, Song E, Jiang E, Harri R, Cano C, Vedanthan R, Ogedegbe G, Bragg M | BMJ nutrition, prevention & health | 35028520 | BMJ Nutr Prev Health | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/35028520 |
| Comparing the Prevalence of Alcohol, Combustible and Electronic Cigarettes, Hookah, and Marijuana, in Music Videos across 6 Genres of Popular Music from 2014-2020. | Albert SL, Rogers E, Hall Z, Zuardo G, Bragg MA | Substance use & misuse | 35377260 | Subst Use Misuse | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35377260 |
| The Role of the Endocannabinoid System and Genetic Variation in Adolescent Brain Development. | Meyer HC, Lee FS, Gee DG | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 28685756 | Neuropsychopharmacology | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28685756 |
| Normative range parenting and the developing brain: A scoping review and recommendations for future research. | Farber MJ, Gee DG, Hariri AR | The European journal of neuroscience | 33051903 | Eur J Neurosci | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/33051903 |
| Emotion and Emotion Preferences in Daily Life: The Role of Anxiety. | Vanderlind WM, Everaert J, Caballero C, Cohodes EM, Gee DG | Clinical psychological science : a journal of the Association for Psychological Science | 35174008 | Clin Psychol Sci | 2021 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/35174008 |
| Associations among negative life events, changes in cortico-limbic connectivity, and psychopathology in the ABCD Study. | Brieant AE, Sisk LM, Gee DG | Developmental cognitive neuroscience | 34710799 | Dev Cogn Neurosci | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34710799 |
| Family accommodation in pediatric anxiety: Relations with avoidance and self-efficacy. | Kitt ER, Lewis KM, Galbraith J, Abend R, Smith AR, Lebowitz ER, Pine DS, Gee DG | Behaviour research and therapy | 35613517 | Behav Res Ther | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35613517 |
| When Uncertainty Is a Certainty: Optimizing Exposure-Based Therapies. | Gee DG, Odriozola P | Biological psychiatry global open science | 36325300 | Biol Psychiatry Glob Open Sci | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36325300 |
| Reforming clinical psychological science training: The importance of collaborative decision-making with trainees. | Gee DG, Shackman AJ | Clinical psychological science : a journal of the Association for Psychological Science | 38550306 | Clin Psychol Sci | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38550306 |
| Responding to threat: Associations between neural reactivity to and behavioral avoidance of threat in pediatric anxiety. | Kitt ER, Zacharek SJ, Odriozola P, Nardini C, Hommel G, Martino A, Anderson T, Spencer H, Broussard A, Dean J, Marin CE, Silverman WK, Lebowitz ER, Gee DG | Journal of affective disorders | 38290579 | J Affect Disord | 2024 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/38290579 |
| Atypical frontoamygdala functional connectivity in youth with autism. | Odriozola P, Dajani DR, Burrows CA, Gabard-Durnam LJ, Goodman E, Baez AC, Tottenham N, Uddin LQ, Gee DG | Developmental cognitive neuroscience | 30581125 | Dev Cogn Neurosci | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30581125 |
| Neurocognitive Development of Motivated Behavior: Dynamic Changes across Childhood and Adolescence. | Gee DG, Bath KG, Johnson CM, Meyer HC, Murty VP, van den Bos W, Hartley CA | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30381435 | J Neurosci | 2018 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/30381435 |
| When do sensitive periods emerge later in development? | Gee DG | Trends in cognitive sciences | 34933793 | Trends Cogn Sci | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34933793 |
| Leveraging the developmental neuroscience of caregiving to promote resilience among youth exposed to adversity. | Gee DG, Cohodes EM | Development and psychopathology | 37929292 | Dev Psychopathol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37929292 |
| Development of the emotional brain. | Casey BJ, Heller AS, Gee DG, Cohen AO | Neuroscience letters | 29197573 | Neurosci Lett | 2019 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/29197573 |
| Stress and adolescence: vulnerability and opportunity during a sensitive window of development. | Sisk LM, Gee DG | Current opinion in psychology | 34818623 | Curr Opin Psychol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34818623 |
| Training the Next Generation of Clinical Psychological Scientists: A Data-Driven Call to Action. | Gee DG, DeYoung KA, McLaughlin KA, Tillman RM, Barch DM, Forbes EE, Krueger RF, Strauman TJ, Weierich MR, Shackman AJ | Annual review of clinical psychology | 35216523 | Annu Rev Clin Psychol | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/35216523 |
| Sensitive Periods of Emotion Regulation: Influences of Parental Care on Frontoamygdala Circuitry and Plasticity. | Gee DG | New directions for child and adolescent development | 27589500 | New Dir Child Adolesc Dev | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27589500 |
| Caregiving influences on emotional learning and regulation: Applying a sensitive period model. | Gee DG | Current opinion in behavioral sciences | 33718534 | Curr Opin Behav Sci | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33718534 |
| Parental Buffering of Stress in the Time of COVID-19: Family-Level Factors May Moderate the Association Between Pandemic-Related Stress and Youth Symptomatology. | Cohodes EM, McCauley S, Gee DG | Research on child and adolescent psychopathology | 33591457 | Res Child Adolesc Psychopathol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33591457 |
| Learning About Safety: Conditioned Inhibition as a Novel Approach to Fear Reduction Targeting the Developing Brain. | Odriozola P, Gee DG | The American journal of psychiatry | 33167673 | Am J Psychiatry | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/33167673 |
| Genetic variation in endocannabinoid signaling is associated with differential network-level functional connectivity in youth. | Sisk LM, Rapuano KM, Conley MI, Greene AS, Horien C, Rosenberg MD, Scheinost D, Constable RT, Glatt CE, Casey BJ, Gee DG | Journal of neuroscience research | 34496065 | J Neurosci Res | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34496065 |
| Associations between early-life stress exposure and internalizing symptomatology during the COVID-19 pandemic: Assessing the role of neurobehavioral mediators. | Foster JC, Cohodes EM, Brieant AE, McCauley S, Odriozola P, Zacharek SJ, Pierre JC, Hodges HR, Kribakaran S, Haberman JT, Holt-Gosselin B, Gee DG | Biological psychiatry global open science | 35959474 | Biol Psychiatry Glob Open Sci | 2022 Aug 6 | https://www.ncbi.nlm.nih.gov/pubmed/35959474 |
| Leveraging the science of stress to promote resilience and optimize mental health interventions during adolescence. | Gee DG, Sisk LM, Cohodes EM, Bryce NV | Nature communications | 36171218 | Nat Commun | 2022 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/36171218 |
| Neurodevelopmental mechanisms linking early experiences and mental health: Translating science to promote well-being among youth. | Gee DG | The American psychologist | 36595400 | Am Psychol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36595400 |
| Psychological and environmental correlates of locus of control and posttraumatic stress symptoms: A latent profile analysis. | Foster JC, Cohodes EM, Mandell JD, McCauley S, Hodges HR, Pierre JC, Kribakaran S, Haberman JT, Notti ME, Schroeder MM, Ababio R, Beloborodova A, Gee DG | Psychological trauma : theory, research, practice and policy | 40811138 | Psychol Trauma | 2025 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/40811138 |
| Developmental neuroplasticity and adversity-related risk for psychopathology. | Sisk LM, Gee DG | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 39095522 | Neuropsychopharmacology | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39095522 |
| Person-centered analyses reveal that developmental adversity at moderate levels and neural threat/safety discrimination are associated with lower anxiety in early adulthood. | Sisk LM, Keding TJ, Ruiz S, Odriozola P, Kribakaran S, Cohodes EM, McCauley S, Zacharek SJ, Hodges HR, Haberman JT, Pierre JC, Caballero C, Baskin-Sommers A, Gee DG | Communications psychology | 40044923 | Commun Psychol | 2025 Mar 5 | https://www.ncbi.nlm.nih.gov/pubmed/40044923 |
| Developmental Differences in a Hippocampal-Cingulate Pathway Involved in Learned Safety Following Interpersonal Trauma Exposure. | Kribakaran S, DeCross SN, Odriozola P, McLaughlin KA, Gee DG | Journal of the American Academy of Child and Adolescent Psychiatry | 39368629 | J Am Acad Child Adolesc Psychiatry | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39368629 |
| Multivariate Links Between the Developmental Timing of Adversity Exposure and White Matter Tract Connectivity in Adulthood. | Sisk LM, Keding TJ, Cohodes EM, McCauley S, Pierre JC, Odriozola P, Kribakaran S, Haberman JT, Zacharek SJ, Hodges HR, Caballero C, Gold G, Huang AY, Talton A, Gee DG | Biological psychiatry. Cognitive neuroscience and neuroimaging | 39978462 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39978462 |
| Implications of the Research Domain Criteria project for childhood anxiety and its disorders. | Lebowitz ER, Gee DG, Pine DS, Silverman WK | Clinical psychology review | 29526524 | Clin Psychol Rev | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29526524 |
| Emotion regulation as a transdiagnostic factor in the development of internalizing and externalizing psychopathology: Current and future directions. | Aldao A, Gee DG, De Los Reyes A, Seager I | Development and psychopathology | 27739387 | Dev Psychopathol | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27739387 |
| Predicting Mental Health in Adolescence: Frontoinsular Circuitry, Emotion in Daily Life, and Risk for Depression. | Gee DG, Caballero C | Biological psychiatry. Cognitive neuroscience and neuroimaging | 31395211 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31395211 |
| Ventral hippocampus interacts with prelimbic cortex during inhibition of threat response via learned safety in both mice and humans. | Meyer HC, Odriozola P, Cohodes EM, Mandell JD, Li A, Yang R, Hall BS, Haberman JT, Zacharek SJ, Liston C, Lee FS, Gee DG | Proceedings of the National Academy of Sciences of the United States of America | 31822612 | Proc Natl Acad Sci U S A | 2019 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/31822612 |
| Meta-analysis of Structural Magnetic Resonance Imaging Studies in Pediatric Posttraumatic Stress Disorder and Comparison With Related Conditions. | Kribakaran S, Danese A, Bromis K, Kempton MJ, Gee DG | Biological psychiatry. Cognitive neuroscience and neuroimaging | 31690501 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31690501 |
| Influences of early-life stress on frontolimbic circuitry: Harnessing a dimensional approach to elucidate the effects of heterogeneity in stress exposure. | Cohodes EM, Kitt ER, Baskin-Sommers A, Gee DG | Developmental psychobiology | 32227350 | Dev Psychobiol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32227350 |
| Lack of robust associations between prepandemic coping strategies and frontolimbic circuitry with depression and anxiety symptoms during the COVID-19 pandemic: A preregistered longitudinal study. | Holt-Gosselin B, Cohodes EM, McCauley S, Foster JC, Odriozola P, Zacharek SJ, Kribakaran S, Haberman JT, Hodges HR, Gee DG | Behavioral neuroscience | 36395014 | Behav Neurosci | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36395014 |
| Parental Assistance with Emotion Regulation Moderates Link Between COVID-19 Stress and Child Mental Health. | Cohodes EM, McCauley S, Preece DA, Gross JJ, Gee DG | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 36399629 | J Clin Child Adolesc Psychol | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/36399629 |
| Novel insights from actigraphy: Anxiety is associated with sleep quantity but not quality during childhood. | Cohodes EM, Abusch A, Odriozola P, Gee DG | Clinical child psychology and psychiatry | 30696260 | Clin Child Psychol Psychiatry | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30696260 |
| Migration-related trauma and mental health among migrant children emigrating from Mexico and Central America to the United States: Effects on developmental neurobiology and implications for policy. | Cohodes EM, Kribakaran S, Odriozola P, Bakirci S, McCauley S, Hodges HR, Sisk LM, Zacharek SJ, Gee DG | Developmental psychobiology | 34292596 | Dev Psychobiol | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34292596 |
| Experimental evidence for a child-to-adolescent switch in human amygdala-prefrontal cortex communication: A cross-sectional pilot study. | Gee DG, Hanson C, Caglar LR, Fareri DS, Gabard-Durnam LJ, Mills-Finnerty C, Goff B, Caldera CJ, Lumian DS, Flannery J, Hanson SJ, Tottenham N | Developmental science | 35080089 | Dev Sci | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35080089 |
| Associations among Household and Neighborhood Socioeconomic Disadvantages, Resting-state Frontoamygdala Connectivity, and Internalizing Symptoms in Youth. | Ip KI, Sisk LM, Horien C, Conley MI, Rapuano KM, Rosenberg MD, Greene AS, Scheinost D, Constable RT, Casey BJ, Baskin-Sommers A, Gee DG | Journal of cognitive neuroscience | 35104356 | J Cogn Neurosci | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/35104356 |
| Decomposing complex links between the childhood environment and brain structure in school-aged youth. | Hong SJ, Sisk LM, Caballero C, Mekhanik A, Roy AK, Milham MP, Gee DG | Developmental cognitive neuroscience | 33556882 | Dev Cogn Neurosci | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33556882 |
| Development and validation of the Dimensional Inventory of Stress and Trauma Across the Lifespan (DISTAL): A novel assessment tool to facilitate the dimensional study of psychobiological sequelae of exposure to adversity. | Cohodes EM, McCauley S, Pierre JC, Hodges HR, Haberman JT, Santiuste I, Rogers MK, Wang J, Mandell JD, Gee DG | Developmental psychobiology | 37073593 | Dev Psychobiol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37073593 |
| Corticolimbic structure-function coupling is sensitive to childhood adversity and buffers adversity-related symptoms during development. | Sisk LM, Keding TJ, Drew A, Ma E, Shafiei G, Cieslak M, Satterthwaite TD, Gee DG | bioRxiv : the preprint server for biology | 41497670 | bioRxiv | 2025 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/41497670 |
| Individual differences in frontolimbic circuitry and anxiety emerge with adolescent changes in endocannabinoid signaling across species. | Gee DG, Fetcho RN, Jing D, Li A, Glatt CE, Drysdale AT, Cohen AO, Dellarco DV, Yang RR, Dale AM, Jernigan TL, Lee FS, Casey BJ, PING Consortium | Proceedings of the National Academy of Sciences of the United States of America | 27001846 | Proc Natl Acad Sci U S A | 2016 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/27001846 |
| Comparing neural correlates of conditioned inhibition between children with and without anxiety disorders - A preliminary study. | Harrewijn A, Kitt ER, Abend R, Matsumoto C, Odriozola P, Winkler AM, Leibenluft E, Pine DS, Gee DG | Behavioural brain research | 33160010 | Behav Brain Res | 2021 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/33160010 |
| Leveraging big data to map neurodevelopmental trajectories in pediatric anxiety. | Zacharek SJ, Kribakaran S, Kitt ER, Gee DG | Developmental cognitive neuroscience | 34147988 | Dev Cogn Neurosci | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34147988 |
| Caregiving Influences on Development: A Sensitive Period for Biological Embedding of Predictability and Safety Cues. | Gee DG, Cohodes EM | Current directions in psychological science | 34675455 | Curr Dir Psychol Sci | 2021 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/34675455 |
| Validation of an electronic self-administered version of the Dimensional Inventory of Stress and Trauma Across the Lifespan in a large sample of young adults. | Cohodes EM, Mandell JD, Notti ME, Schroeder MM, Ababio R, McCauley S, Pierre JC, Hodges HR, Gee DG | Psychological trauma : theory, research, practice and policy | 37956029 | Psychol Trauma | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/37956029 |
| Parents' emotion suppression exacerbates the effect of COVID-19 stress on youth internalizing symptomatology. | Cohodes EM, McCauley S, Preece DA, Gross JJ, Gee DG | Emotion (Washington, D.C.) | 36355667 | Emotion | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36355667 |
| Managing fear and anxiety in development: A framework for understanding the neurodevelopment of emotion regulation capacity and tendency. | Caballero C, Nook EC, Gee DG | Neuroscience and biobehavioral reviews | 36529313 | Neurosci Biobehav Rev | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36529313 |
| Characterizing experiential elements of early-life stress to inform resilience: Buffering effects of controllability and predictability and the importance of their timing. | Cohodes EM, Sisk LM, Keding TJ, Mandell JD, Notti ME, Gee DG | Development and psychopathology | 37496155 | Dev Psychopathol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37496155 |
| Hippocampal Involvement in Safety Signal Learning Varies With Anxiety Among Healthy Adults. | Odriozola P, Kribakaran S, Cohodes EM, Zacharek SJ, McCauley S, Haberman JT, Quintela LA, Hernandez C, Spencer H, Pruessner L, Caballero C, Gee DG | Biological psychiatry global open science | 38298801 | Biol Psychiatry Glob Open Sci | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38298801 |
| Rapid detection of SARS-CoV-2 RNA in saliva via Cas13. | Chandrasekaran SS, Agrawal S, Fanton A, Jangid AR, Charrez B, Escajeda AM, Son S, Mcintosh R, Tran H, Bhuiya A, de León Derby MD, Switz NA, Armstrong M, Harris AR, Prywes N, Lukarska M, Biering SB, Smock DCJ, Mok A, Knott GJ, Dang Q, Van Dis E, Dugan E, Kim S, Liu TY, IGI Testing Consortium, Moehle EA, Kogut K, Eskenazi B, Harris E, Stanley SA, Lareau LF, Tan MX, Fletcher DA, Doudna JA, Savage DF, Hsu PD | Nature biomedical engineering | 35953650 | Nat Biomed Eng | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35953650 |
| Accelerated RNA detection using tandem CRISPR nucleases. | Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, de León Derby MD, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, Fozouni P, Shu J, Stephens SI, Kumar GR, Zhao C, Mok A, Iavarone AT, Escajeda AM, McIntosh R, Kim SE, Dugan EJ, IGI Testing Consortium, Pollard KS, Tan MX, Ott M, Fletcher DA, Lareau LF, Hsu PD, Savage DF, Doudna JA | medRxiv : the preprint server for health sciences | 33791736 | medRxiv | 2021 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/33791736 |
| Rapid, point-of-care molecular diagnostics with Cas13. | Agrawal S, Fanton A, Chandrasekaran SS, Charrez B, Escajeda AM, Son S, Mcintosh R, Bhuiya A, de León Derby MD, Switz NA, Armstrong M, Harris AR, Prywes N, Lukarska M, Biering SB, Smock DCJ, Mok A, Knott GJ, Dang Q, Van Dis E, Dugan E, Kim S, Liu TY, IGI Testing Consortium, Harris E, Stanley SA, Lareau LF, Tan MX, Fletcher DA, Doudna JA, Savage DF, Hsu PD | medRxiv : the preprint server for health sciences | 33354689 | medRxiv | 2021 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/33354689 |
| Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors. | Konermann S, Lotfy P, Brideau NJ, Oki J, Shokhirev MN, Hsu PD | Cell | 29551272 | Cell | 2018 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/29551272 |
| Genome-wide bidirectional CRISPR screens identify mucins as host factors modulating SARS-CoV-2 infection. | Biering SB, Sarnik SA, Wang E, Zengel JR, Leist SR, Schäfer A, Sathyan V, Hawkins P, Okuda K, Tau C, Jangid AR, Duffy CV, Wei J, Gilmore RC, Alfajaro MM, Strine MS, Wrynla XH, Van Dis E, Catamura C, Yamashiro LH, Belk JA, Begeman A, Stark JC, Shon DJ, Fox DM, Ezzatpour S, Huang E, Olegario N, Rustagi A, Volmer AS, Livraghi-Butrico A, Wehri E, Behringer RR, Cheon DJ, Schaletzky J, Aguilar HC, Puschnik AS, Button B, Pinsky BA, Blish CA, Baric RS, O'Neal WK, Bertozzi CR, Wilen CB, Boucher RC, Carette JE, Stanley SA, Harris E, Konermann S, Hsu PD | Nature genetics | 35879412 | Nat Genet | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35879412 |
| Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome. | Durrant MG, Fanton A, Tycko J, Hinks M, Chandrasekaran SS, Perry NT, Schaepe J, Du PP, Lotfy P, Bassik MC, Bintu L, Bhatt AS, Hsu PD | Nature biotechnology | 36217031 | Nat Biotechnol | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36217031 |
| Accelerated RNA detection using tandem CRISPR nucleases. | Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, Díaz de León Derby M, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, Fozouni P, Shu J, Stephens SI, Kumar GR, Zhao C, Mok A, Iavarone AT, Escajeda AM, McIntosh R, Kim S, Dugan EJ, IGI Testing Consortium, Pollard KS, Tan MX, Ott M, Fletcher DA, Lareau LF, Hsu PD, Savage DF, Doudna JA | Nature chemical biology | 34354262 | Nat Chem Biol | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34354262 |
| Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity. | Tycko J, Myer VE, Hsu PD | Molecular cell | 27494557 | Mol Cell | 2016 Aug 4 | https://www.ncbi.nlm.nih.gov/pubmed/27494557 |
| Deep learning and CRISPR-Cas13d ortholog discovery for optimized RNA targeting. | Wei J, Lotfy P, Faizi K, Baungaard S, Gibson E, Wang E, Slabodkin H, Kinnaman E, Chandrasekaran S, Kitano H, Durrant MG, Duffy CV, Pawluk A, Hsu PD, Konermann S | Cell systems | 38091991 | Cell Syst | 2023 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/38091991 |
| Fibroblasts as an experimental model system for the study of comparative physiology. | Madelaire CB, Klink AC, Israelsen WJ, Hindle AG | Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology | 35321853 | Comp Biochem Physiol B Biochem Mol Biol | 2022 Jun-Jul | https://www.ncbi.nlm.nih.gov/pubmed/35321853 |
| Courtship behavior of the meadow jumping mouse (Zapus hudsonius). | Brem EA, Israelsen WJ | Western North American naturalist | 34290569 | West N Am Nat | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34290569 |
| Cancer-associated mutations in human pyruvate kinase M2 impair enzyme activity. | Liu VM, Howell AJ, Hosios AM, Li Z, Israelsen WJ, Vander Heiden MG | FEBS letters | 31642061 | FEBS Lett | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31642061 |
| Cutaneous Dermatophilosis in a Meadow Jumping Mouse (Zapus hudsonius). | Caron TJ, Artim SC, Israelsen WJ, Holcombe HR, Fox JG, Bakthavatchalu V | Comparative medicine | 29460718 | Comp Med | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29460718 |
| Breeding and hibernation of captive meadow jumping mice (Zapus hudsonius). | Brem EA, McNulty AD, Israelsen WJ | PloS one | 33970917 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33970917 |
| Nesting box imager: Contact-free, real-time measurement of activity, surface body temperature, and respiratory rate applied to hibernating mouse models. | Kallmyer NE, Shin HJ, Brem EA, Israelsen WJ, Reuel NF | PLoS biology | 31339883 | PLoS Biol | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31339883 |
| Primary Central Nervous System Lymphoma: A Critical Review of the Role of Surgery for Resection. | Yun J, Iwamoto FM, Sonabend AM | Archives in cancer research | 28239600 | Arch Cancer Res | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28239600 |
| Assessing the Safety of Craniotomy for Resection of Primary Central Nervous System Lymphoma: A Nationwide Inpatient Sample Analysis. | Yun J, Yang J, Cloney M, Mehta A, Singh S, Iwamoto FM, Neugut AI, Sonabend AM | Frontiers in neurology | 28955300 | Front Neurol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28955300 |
| Defining Glioblastoma Resectability Through the Wisdom of the Crowd: A Proof-of-Principle Study. | Sonabend AM, Zacharia BE, Cloney MB, Sonabend A, Showers C, Ebiana V, Nazarian M, Swanson KR, Baldock A, Brem H, Bruce JN, Butler W, Cahill DP, Carter B, Orringer DA, Roberts DW, Sagher O, Sanai N, Schwartz TH, Silbergeld DL, Sisti MB, Thompson RC, Waziri AE, Ghogawala Z, McKhann G 2nd | Neurosurgery | 27509070 | Neurosurgery | 2017 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/27509070 |
| Glioma immunoediting, a driver of tumor evolution, and the next battle for immunotherapy. | Sonabend AM, Stupp R, Lee-Chang C, Okada H | Oncotarget | 33456708 | Oncotarget | 2021 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/33456708 |
| Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. | Zhao J, Chen AX, Gartrell RD, Silverman AM, Aparicio L, Chu T, Bordbar D, Shan D, Samanamud J, Mahajan A, Filip I, Orenbuch R, Goetz M, Yamaguchi JT, Cloney M, Horbinski C, Lukas RV, Raizer J, Rae AI, Yuan J, Canoll P, Bruce JN, Saenger YM, Sims P, Iwamoto FM, Sonabend AM, Rabadan R | Nature medicine | 30742119 | Nat Med | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30742119 |
| Ribosomal protein S11 influences glioma response to TOP2 poisons. | Awah CU, Chen L, Bansal M, Mahajan A, Winter J, Lad M, Warnke L, Gonzalez-Buendia E, Park C, Zhang D, Feldstein E, Yu D, Zannikou M, Balyasnikova IV, Martuscello R, Konerman S, Győrffy B, Burdett KB, Scholtens DM, Stupp R, Ahmed A, Hsu P, Sonabend AM | Oncogene | 32528131 | Oncogene | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32528131 |
| CD8(+) T-cell-Mediated Immunoediting Influences Genomic Evolution and Immune Evasion in Murine Gliomas. | Kane JR, Zhao J, Tsujiuchi T, Laffleur B, Arrieta VA, Mahajan A, Rao G, Mela A, Dmello C, Chen L, Zhang DY, González-Buendia E, Lee-Chang C, Xiao T, Rothschild G, Basu U, Horbinski C, Lesniak MS, Heimberger AB, Rabadan R, Canoll P, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 32430477 | Clin Cancer Res | 2020 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/32430477 |
| Topoisomerase II Poisons for Glioblastoma; Existing Challenges and Opportunities to Personalize Therapy. | Mehta A, Awah CU, Sonabend AM | Frontiers in neurology | 29988316 | Front Neurol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29988316 |
| Defining Glioblastoma Resectability Through the Wisdom of the Crowd: A Proof-of-Principle Study. | Neurosurgery | 29669127 | Neurosurgery | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29669127 | |
| Overcoming the Blood-Brain Barrier with an Implantable Ultrasound Device. | Sonabend AM, Stupp R | Clinical cancer research : an official journal of the American Association for Cancer Research | 31076548 | Clin Cancer Res | 2019 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/31076548 |
| Cancer Immunoediting in Gliomas: Recent Advances and Implications for Immunotherapy. | Shah PV, Arrieta VA, Lee-Chang C, Sonabend AM | Journal of cellular immunology | 35592772 | J Cell Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/35592772 |
| Convection-Enhanced Delivery. | Mehta AM, Sonabend AM, Bruce JN | Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics | 28299724 | Neurotherapeutics | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28299724 |
| Emerging immunotherapies for malignant glioma: from immunogenomics to cell therapy. | Dunn GP, Cloughesy TF, Maus MV, Prins RM, Reardon DA, Sonabend AM | Neuro-oncology | 32615600 | Neuro Oncol | 2020 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/32615600 |
| ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma. | Arrieta VA, Chen AX, Kane JR, Kang SJ, Kassab C, Dmello C, Zhao J, Burdett KB, Upadhyayula PS, Lee-Chang C, Shilati J, Jaishankar D, Chen L, Gould A, Zhang D, Yuan J, Zhao W, Ling X, Burks JK, Laffleur B, Amidei C, Bruce JN, Lukas RV, Yamaguchi JT, Cieremans D, Rothschild G, Basu U, McCord M, Brat DJ, Zhang H, Cooper LAD, Zhang B, Sims P, Cloughesy TF, Prins R, Canoll P, Stupp R, Heimberger AB, Horbinski C, Iwamoto FM, Rabadan R, Sonabend AM | Nature cancer | 35121903 | Nat Cancer | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35121903 |
| Beyond DNA damage response: Immunomodulatory attributes of CHEK2 in solid tumors. | Qian H, Ali H, Karri V, Low JT, Ashley DM, Heimberger AB, Godley LA, Sonabend AM, Dmello C | Oncotarget | 40492861 | Oncotarget | 2025 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/40492861 |
| Targeting CHEK2-YBX1&YBX3 regulatory hub to potentiate immune checkpoint blockade response in gliomas. | Ali H, Zhou N, Chen L, van Hijfte L, Karri V, Zhou Y, Habashy K, Arrieta VA, Kim KS, Duffy J, Yeeravalli R, Tiek DM, Song X, Mishra S, Lee-Chang C, Ahmed AU, Heiland DH, Sonabend AM, Dmello C | bioRxiv : the preprint server for biology | 40161682 | bioRxiv | 2025 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/40161682 |
| Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade. | Dmello C, Zhao J, Chen L, Gould A, Castro B, Arrieta VA, Zhang DY, Kim KS, Kanojia D, Zhang P, Miska J, Yeeravalli R, Habashy K, Saganty R, Kang SJ, Fares J, Liu C, Dunn G, Bartom E, Schipma MJ, Hsu PD, Alghamri MS, Lesniak MS, Heimberger AB, Rabadan R, Lee-Chang C, Sonabend AM | Nature communications | 36949040 | Nat Commun | 2023 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/36949040 |
| YBX1&YBX3 as novel targets to potentiate immune checkpoint blockade response in gliomas. | Ali H, Zhou N, Chen L, van Hijfte L, Tulaiha R, Karri V, Zhou Y, Habashy K, Arrieta VA, Kim KS, Duffy J, Yeeravalli R, Tiek DM, Song X, Mishra S, Horbinski C, Lee-Chang C, Ahmed A, Wang L, Heiland DH, Sonabend AM, Dmello C | Neuro-oncology | 41025501 | Neuro Oncol | 2026 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/41025501 |
| The safety of resection for primary central nervous system lymphoma: a single institution retrospective analysis. | Cloney MB, Sonabend AM, Yun J, Yang J, Iwamoto F, Singh S, Bhagat G, Canoll P, Zanazzi G, Bruce JN, Sisti M, Sheth S, Connolly ES, McKhann G | Journal of neuro-oncology | 28116650 | J Neurooncol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28116650 |
| Craniotomy and Survival for Primary Central Nervous System Lymphoma. | Rae AI, Mehta A, Cloney M, Kinslow CJ, Wang TJC, Bhagat G, Canoll PD, Zanazzi GJ, Sisti MB, Sheth SA, Connolly ES, McKhann GM, Bruce JN, Iwamoto FM, Sonabend AM | Neurosurgery | 29660011 | Neurosurgery | 2019 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/29660011 |
| The possibility of cancer immune editing in gliomas. A critical review. | Arrieta VA, Cacho-Díaz B, Zhao J, Rabadan R, Chen L, Sonabend AM | Oncoimmunology | 29900059 | Oncoimmunology | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29900059 |
| Author Correction: Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. | Zhao J, Chen AX, Gartrell RD, Silverman AM, Aparicio L, Chu T, Bordbar D, Shan D, Samanamud J, Mahajan A, Filip I, Orenbuch R, Goetz M, Yamaguchi JT, Cloney M, Horbinski C, Lukas RV, Raizer J, Rae AI, Yuan J, Canoll P, Bruce JN, Saenger YM, Sims P, Iwamoto FM, Sonabend AM, Rabadan R | Nature medicine | 30996326 | Nat Med | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30996326 |
| TOP2B Enzymatic Activity on Promoters and Introns Modulates Multiple Oncogenes in Human Gliomas. | Gonzalez-Buendia E, Zhao J, Wang L, Mukherjee S, Zhang D, Arrieta VA, Feldstein E, Kane JR, Kang SJ, Lee-Chang C, Mahajan A, Chen L, Realubit R, Karan C, Magnuson L, Horbinski C, Marshall SA, Sarkaria JN, Mohyeldin A, Nakano I, Bansal M, James CD, Brat DJ, Ahmed A, Canoll P, Rabadan R, Shilatifard A, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 34433651 | Clin Cancer Res | 2021 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/34433651 |
| Can patient selection and neoadjuvant administration resuscitate PD-1 inhibitors for glioblastoma? | Arrieta VA, Iwamoto F, Lukas RV, Sachdev S, Rabadan R, Sonabend AM | Journal of neurosurgery | 31812138 | J Neurosurg | 2020 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/31812138 |
| Ultrasound-mediated Delivery of Paclitaxel for Glioma: A Comparative Study of Distribution, Toxicity, and Efficacy of Albumin-bound Versus Cremophor Formulations. | Zhang DY, Dmello C, Chen L, Arrieta VA, Gonzalez-Buendia E, Kane JR, Magnusson LP, Baran A, James CD, Horbinski C, Carpentier A, Desseaux C, Canney M, Muzzio M, Stupp R, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 31831565 | Clin Cancer Res | 2020 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/31831565 |
| Translocon-associated Protein Subunit SSR3 Determines and Predicts Susceptibility to Paclitaxel in Breast Cancer and Glioblastoma. | Dmello C, Sonabend A, Arrieta VA, Zhang DY, Kanojia D, Chen L, Gould A, Zhang J, Kang SJ, Winter J, Horbinski C, Amidei C, Győrffy B, Cordero A, Chang CL, Castro B, Hsu P, Ahmed AU, Lesniak MS, Stupp R, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 35552677 | Clin Cancer Res | 2022 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/35552677 |
| Retrotransposon activation during Drosophila metamorphosis conditions adult antiviral responses. | Wang L, Tracy L, Su W, Yang F, Feng Y, Silverman N, Zhang ZZZ | Nature genetics | 36396707 | Nat Genet | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36396707 |
| Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification. | Yu B, Lin YA, Parhad SS, Jin Z, Ma J, Theurkauf WE, Zhang ZZ, Huang Y | EMBO reports | 29858487 | EMBO Rep | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29858487 |
| Retrotransposons hijack alt-EJ for DNA replication and eccDNA biogenesis. | Yang F, Su W, Chung OW, Tracy L, Wang L, Ramsden DA, Zhang ZZZ | Nature | 37438532 | Nature | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37438532 |
| A Robust Transposon-Endogenizing Response from Germline Stem Cells. | Moon S, Cassani M, Lin YA, Wang L, Dou K, Zhang ZZ | Developmental cell | 30393075 | Dev Cell | 2018 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/30393075 |
| Hijacking Oogenesis Enables Massive Propagation of LINE and Retroviral Transposons. | Wang L, Dou K, Moon S, Tan FJ, Zhang ZZ | Cell | 30057117 | Cell | 2018 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/30057117 |
| Drosophila P75 safeguards oogenesis by preventing H3K9me2 spreading. | Dou K, Liu Y, Zhang Y, Wang C, Huang Y, Zhang ZZ | Journal of genetics and genomics = Yi chuan xue bao | 32499180 | J Genet Genomics | 2020 Apr 20 | https://www.ncbi.nlm.nih.gov/pubmed/32499180 |
| Chronic Inflammation Promotes Skin Carcinogenesis in Cancer-Prone Discoid Lupus Erythematosus. | Zaalberg A, Moradi Tuchayi S, Ameri AH, Ngo KH, Cunningham TJ, Eliane JP, Livneh M, Horn TD, Rosman IS, Musiek A, Anadkat MJ, Demehri S | The Journal of investigative dermatology | 30030152 | J Invest Dermatol | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30030152 |
| CD4+ T helper 2 cells suppress breast cancer by inducing terminal differentiation. | Boieri M, Malishkevich A, Guennoun R, Marchese E, Kroon S, Trerice KE, Awad M, Park JH, Iyer S, Kreuzer J, Haas W, Rivera MN, Demehri S | The Journal of experimental medicine | 35657353 | J Exp Med | 2022 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/35657353 |
| Natural killer cells suppress cancer metastasis by eliminating circulating cancer cells. | Vyas M, Requesens M, Nguyen TH, Peigney D, Azin M, Demehri S | Frontiers in immunology | 36733396 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36733396 |
| Thymic stromal lymphopoietin blocks early stages of breast carcinogenesis. | Demehri S, Cunningham TJ, Manivasagam S, Ngo KH, Moradi Tuchayi S, Reddy R, Meyers MA, DeNardo DG, Yokoyama WM | The Journal of clinical investigation | 26927668 | J Clin Invest | 2016 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/26927668 |
| Topical Combination of Fluorouracil and Calcipotriene as a Palliative Therapy for Refractory Extramammary Paget Disease. | Molina GE, Khalifian S, Mull JL, Chen L, Rosman IS, Faulkner-Jones BE, Ngo KH, Demehri S, Cornelius LA, Wu PA | JAMA dermatology | 30785593 | JAMA Dermatol | 2019 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/30785593 |
| IL-33/regulatory T cell axis triggers the development of a tumor-promoting immune environment in chronic inflammation. | Ameri AH, Moradi Tuchayi S, Zaalberg A, Park JH, Ngo KH, Li T, Lopez E, Colonna M, Lee RT, Mino-Kenudson M, Demehri S | Proceedings of the National Academy of Sciences of the United States of America | 30696763 | Proc Natl Acad Sci U S A | 2019 Feb 12 | https://www.ncbi.nlm.nih.gov/pubmed/30696763 |
| Skin cancer precursor immunotherapy for squamous cell carcinoma prevention. | Rosenberg AR, Tabacchi M, Ngo KH, Wallendorf M, Rosman IS, Cornelius LA, Demehri S | JCI insight | 30895944 | JCI Insight | 2019 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/30895944 |
| Immunity to commensal papillomaviruses protects against skin cancer. | Strickley JD, Messerschmidt JL, Awad ME, Li T, Hasegawa T, Ha DT, Nabeta HW, Bevins PA, Ngo KH, Asgari MM, Nazarian RM, Neel VA, Jenson AB, Joh J, Demehri S | Nature | 31666702 | Nature | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31666702 |
| Rejection of benign melanocytic nevi by nevus-resident CD4(+) T cells. | Schiferle EB, Cheon SY, Ham S, Son HG, Messerschmidt JL, Lawrence DP, Cohen JV, Flaherty KT, Moon JJ, Lian CG, Sullivan RJ, Demehri S | Science advances | 34162549 | Sci Adv | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34162549 |
| CD8(+) T cell immunity blocks the metastasis of carcinogen-exposed breast cancer. | Li K, Li T, Feng Z, Huang M, Wei L, Yan Z, Long M, Hu Q, Wang J, Liu S, Sgroi DC, Demehri S | Science advances | 34144976 | Sci Adv | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34144976 |
| TSLP/dendritic cell axis promotes CD4+ T cell tolerance to the gut microbiome. | Messerschmidt JL, Azin M, Dempsey KE, Demehri S | JCI insight | 37427591 | JCI Insight | 2023 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/37427591 |
| Carcinogen exposure enhances cancer immunogenicity by blocking the development of an immunosuppressive tumor microenvironment. | Huang M, Xia Y, Li K, Shao F, Feng Z, Li T, Azin M, Demehri S | The Journal of clinical investigation | 37843274 | J Clin Invest | 2023 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/37843274 |
| Thymic stromal lymphopoietin-stimulated CD4(+) T cells induce senescence in advanced breast cancer. | Boieri M, Marchese E, Pham QM, Azin M, Steidl LE, Malishkevich A, Demehri S | Frontiers in cell and developmental biology | 36467403 | Front Cell Dev Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36467403 |
| Randomized trial of calcipotriol combined with 5-fluorouracil for skin cancer precursor immunotherapy. | Cunningham TJ, Tabacchi M, Eliane JP, Tuchayi SM, Manivasagam S, Mirzaalian H, Turkoz A, Kopan R, Schaffer A, Saavedra AP, Wallendorf M, Cornelius LA, Demehri S | The Journal of clinical investigation | 27869649 | J Clin Invest | 2017 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/27869649 |
| Fractional laser exposure induces neutrophil infiltration (N1 phenotype) into the tumor and stimulates systemic anti-tumor immune response. | Kawakubo M, Demehri S, Manstein D | PloS one | 28922374 | PLoS One | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28922374 |
| Reduction in Human Epidermal Langerhans Cells with Age Is Associated with Decline in CXCL14-Mediated Recruitment of CD14(+) Monocytes. | Hasegawa T, Feng Z, Yan Z, Ngo KH, Hosoi J, Demehri S | The Journal of investigative dermatology | 31881212 | J Invest Dermatol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31881212 |
| Extracellular matrix proteins regulate NK cell function in peripheral tissues. | Bunting MD, Vyas M, Requesens M, Langenbucher A, Schiferle EB, Manguso RT, Lawrence MS, Demehri S | Science advances | 35294229 | Sci Adv | 2022 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/35294229 |
| CD4+ T helper 2 cell-macrophage crosstalk induces IL-24-mediated breast cancer suppression. | Wang B, Xia Y, Zhou C, Zeng Y, Son HG, Demehri S | JCI insight | 39782693 | JCI Insight | 2025 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/39782693 |
| Fractional Laser Releases Tumor-Associated Antigens in Poorly Immunogenic Tumor and Induces Systemic Immunity. | Kawakubo M, Cunningham TJ, Demehri S, Manstein D | Scientific reports | 28986576 | Sci Rep | 2017 Oct 6 | https://www.ncbi.nlm.nih.gov/pubmed/28986576 |
| Divergent Roles of Epithelium-Derived Alarmins in Notch Signaling-Deficient Skin. | Messerschmidt JL, Dempsey KE, Dillon KS, Demehri S | The Journal of investigative dermatology | 32147504 | J Invest Dermatol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32147504 |
| Meeting Report: Translational Advances in Cancer Prevention Agent Development Meeting. | Miller MS, Allen PJ, Brown PH, Chan AT, Clapper ML, Dashwood RH, Demehri S, Disis ML, DuBois RN, Glynn RJ, Kensler TW, Khan SA, Johnson BD, Liby KT, Lipkin SM, Mallery SR, Meuillet EJ, Roden RBS, Schoen RE, Sharp ZD, Shirwan H, Siegfried JM, Rao CV, You M, Vilar E, Szabo E, Mohammed A | Journal of cancer prevention | 33842408 | J Cancer Prev | 2021 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/33842408 |
| Network Controllability in the Inferior Frontal Gyrus Relates to Controlled Language Variability and Susceptibility to TMS. | Medaglia JD, Harvey DY, White N, Kelkar A, Zimmerman J, Bassett DS, Hamilton RH | The Journal of neuroscience : the official journal of the Society for Neuroscience | 29884739 | J Neurosci | 2018 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/29884739 |
| Investigating the influence of an effort-reward interaction on cognitive fatigue in individuals with multiple sclerosis. | Erani F, Patel D, Deck BL, Hamilton RH, Schultheis MT, Medaglia JD | Journal of neuropsychology | 36208463 | J Neuropsychol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36208463 |
| Combining transcranial magnetic stimulation with functional magnetic resonance imaging for probing and modulating neural circuits relevant to affective disorders. | Oathes DJ, Balderston NL, Kording KP, DeLuisi JA, Perez GM, Medaglia JD, Fan Y, Duprat RJ, Satterthwaite TD, Sheline YI, Linn KA | Wiley interdisciplinary reviews. Cognitive science | 33470055 | Wiley Interdiscip Rev Cogn Sci | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33470055 |
| Implementing a concept network model. | Solomon SH, Medaglia JD, Thompson-Schill SL | Behavior research methods | 30891712 | Behav Res Methods | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30891712 |
| Optimally controlling the human connectome: the role of network topology. | Betzel RF, Gu S, Medaglia JD, Pasqualetti F, Bassett DS | Scientific reports | 27468904 | Sci Rep | 2016 Jul 29 | https://www.ncbi.nlm.nih.gov/pubmed/27468904 |
| Graph Theoretic Analysis of Resting State Functional MR Imaging. | Medaglia JD | Neuroimaging clinics of North America | 28985931 | Neuroimaging Clin N Am | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28985931 |
| Moral attitudes and willingness to enhance and repair cognition with brain stimulation. | Medaglia JD, Yaden DB, Helion C, Haslam M | Brain stimulation | 30309762 | Brain Stimul | 2019 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/30309762 |
| Context-Dependent Risk & Benefit Sensitivity Mediate Judgments About Cognitive Enhancement. | Fernandez K, Hamilton R, Cabrera L, Medaglia JD | AJOB neuroscience | 34931943 | AJOB Neurosci | 2022 Jan-Mar | https://www.ncbi.nlm.nih.gov/pubmed/34931943 |
| Brain network efficiency is influenced by the pathologic source of corticobasal syndrome. | Medaglia JD, Huang W, Segarra S, Olm C, Gee J, Grossman M, Ribeiro A, McMillan CT, Bassett DS | Neurology | 28779011 | Neurology | 2017 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/28779011 |
| Functional Neuroimaging in Traumatic Brain Injury: From Nodes to Networks. | Medaglia JD | Frontiers in neurology | 28883806 | Front Neurol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28883806 |
| Language Tasks and the Network Control Role of the Left Inferior Frontal Gyrus. | Medaglia JD, Harvey DY, Kelkar AS, Zimmerman JP, Mass JA, Bassett DS, Hamilton RH | eNeuro | 34244340 | eNeuro | 2021 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/34244340 |
| MXene-infused bioelectronic interfaces for multiscale electrophysiology and stimulation. | Driscoll N, Erickson B, Murphy BB, Richardson AG, Robbins G, Apollo NV, Mentzelopoulos G, Mathis T, Hantanasirisakul K, Bagga P, Gullbrand SE, Sergison M, Reddy R, Wolf JA, Chen HI, Lucas TH, Dillingham TR, Davis KA, Gogotsi Y, Medaglia JD, Vitale F | Science translational medicine | 34550728 | Sci Transl Med | 2021 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/34550728 |
| Money versus performance feedback: money associated with lower feelings of cognitive fatigue. | Erani F, Stoll H, Patel D, Schultheis MT, Medaglia JD | Journal of clinical and experimental neuropsychology | 39611366 | J Clin Exp Neuropsychol | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39611366 |
| TMS-induced phase resets depend on TMS intensity and EEG phase. | Erickson B, Kim B, Sabes P, Rich R, Hatcher A, Fernandez-Nuñez G, Mentzelopoulos G, Vitale F, Medaglia J | Journal of neural engineering | 39321851 | J Neural Eng | 2024 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/39321851 |
| Brain and cognitive reserve: Translation via network control theory. | Medaglia JD, Pasqualetti F, Hamilton RH, Thompson-Schill SL, Bassett DS | Neuroscience and biobehavioral reviews | 28104411 | Neurosci Biobehav Rev | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28104411 |
| What the replication crisis means for intervention science. | Hillary FG, Medaglia JD | International journal of psychophysiology : official journal of the International Organization of Psychophysiology | 31082406 | Int J Psychophysiol | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31082406 |
| Personalizing neuromodulation. | Medaglia JD, Erickson B, Zimmerman J, Kelkar A | International journal of psychophysiology : official journal of the International Organization of Psychophysiology | 30685229 | Int J Psychophysiol | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30685229 |
| A computational network control theory analysis of depression symptoms. | Kenett YN, Beaty RE, Medaglia JD | Personality neuroscience | 30706049 | Personal Neurosci | 2018 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/30706049 |
| Functional Alignment with Anatomical Networks is Associated with Cognitive Flexibility. | Medaglia JD, Huang W, Karuza EA, Kelkar A, Thompson-Schill SL, Ribeiro A, Bassett DS | Nature human behaviour | 30498789 | Nat Hum Behav | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30498789 |
| Enhancing cognitive control with transcranial magnetic stimulation in subject-specific frontoparietal networks. | Dengler J, Deck BL, Stoll H, Fernandez-Nunez G, Kelkar AS, Rich RR, Erickson BA, Erani F, Faseyitan O, Hamilton RH, Medaglia JD | Cortex; a journal devoted to the study of the nervous system and behavior | 38330778 | Cortex | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38330778 |
| Driving the brain towards creativity and intelligence: A network control theory analysis. | Kenett YN, Medaglia JD, Beaty RE, Chen Q, Betzel RF, Thompson-Schill SL, Qiu J | Neuropsychologia | 29307585 | Neuropsychologia | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29307585 |
| Brain state expression and transitions are related to complex executive cognition in normative neurodevelopment. | Medaglia JD, Satterthwaite TD, Kelkar A, Ciric R, Moore TM, Ruparel K, Gur RC, Gur RE, Bassett DS | NeuroImage | 29126965 | Neuroimage | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29126965 |
| Clarifying cognitive control and the controllable connectome. | Medaglia JD | Wiley interdisciplinary reviews. Cognitive science | 29971940 | Wiley Interdiscip Rev Cogn Sci | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29971940 |
| Data-driven brain network models differentiate variability across language tasks. | Bansal K, Medaglia JD, Bassett DS, Vettel JM, Muldoon SF | PLoS computational biology | 30332401 | PLoS Comput Biol | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30332401 |
| Toward a global and reproducible science for brain imaging in neurotrauma: the ENIGMA adult moderate/severe traumatic brain injury working group. | Olsen A, Babikian T, Bigler ED, Caeyenberghs K, Conde V, Dams-O'Connor K, Dobryakova E, Genova H, Grafman J, Håberg AK, Heggland I, Hellstrøm T, Hodges CB, Irimia A, Jha RM, Johnson PK, Koliatsos VE, Levin H, Li LM, Lindsey HM, Livny A, Løvstad M, Medaglia J, Menon DK, Mondello S, Monti MM, Newcombe VFJ, Petroni A, Ponsford J, Sharp D, Spitz G, Westlye LT, Thompson PM, Dennis EL, Tate DF, Wilde EA, Hillary FG | Brain imaging and behavior | 32797398 | Brain Imaging Behav | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32797398 |
| Simulated Attack Reveals How Lesions Affect Network Properties in Poststroke Aphasia. | Medaglia JD, Erickson BA, Pustina D, Kelkar AS, DeMarco AT, Dickens JV, Turkeltaub PE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 35545436 | J Neurosci | 2022 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/35545436 |
| MEKK2 mediates an alternative β-catenin pathway that promotes bone formation. | Greenblatt MB, Shin DY, Oh H, Lee KY, Zhai B, Gygi SP, Lotinun S, Baron R, Liu D, Su B, Glimcher LH, Shim JH | Proceedings of the National Academy of Sciences of the United States of America | 26884171 | Proc Natl Acad Sci U S A | 2016 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/26884171 |
| Impact of a prospective review program for reference laboratory testing requests. | Greenblatt MB, Nowak JA, Quade CC, Tanasijevic M, Lindeman N, Jarolim P | American journal of clinical pathology | 25873495 | Am J Clin Pathol | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25873495 |
| Regulation of sclerostin by the SIRT1 stabilization pathway in osteocytes. | Kim JM, Yang YS, Xie J, Lee O, Kim J, Hong J, Boldyreff B, Filhol O, Chun H, Greenblatt MB, Gao G, Shim JH | Cell death and differentiation | 35169297 | Cell Death Differ | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35169297 |
| Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis. | Deng Z, Ng C, Inoue K, Chen Z, Xia Y, Hu X, Greenblatt M, Pernis A, Zhao B | eLife | 33373293 | Elife | 2020 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/33373293 |
| A RUNX2 stabilization pathway mediates physiologic and pathologic bone formation. | Kim JM, Yang YS, Park KH, Ge X, Xu R, Li N, Song M, Chun H, Bok S, Charles JF, Filhol-Cochet O, Boldyreff B, Dinter T, Yu PB, Kon N, Gu W, Takarada T, Greenblatt MB, Shim JH | Nature communications | 32385263 | Nat Commun | 2020 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/32385263 |
| Alendronate enhances osseointegration in a murine implant model. | Vertesich K, Sosa BR, Niu Y, Ji G, Suhardi V, Turajane K, Mun S, Xu R, Windhager R, Park-Min KH, Greenblatt MB, Bostrom MP, Yang X | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 32915488 | J Orthop Res | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32915488 |
| A vertebral skeletal stem cell lineage driving metastasis. | Sun J, Hu L, Bok S, Yallowitz AR, Cung M, McCormick J, Zheng LJ, Debnath S, Niu Y, Tan AY, Lalani S, Morse KW, Shinn D, Pajak A, Hammad M, Suhardi VJ, Li Z, Li N, Wang L, Zou W, Mittal V, Bostrom MPG, Xu R, Iyer S, Greenblatt MB | Nature | 37704733 | Nature | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37704733 |
| The ERK MAPK Pathway Is Essential for Skeletal Development and Homeostasis. | Kim JM, Yang YS, Park KH, Oh H, Greenblatt MB, Shim JH | International journal of molecular sciences | 31013682 | Int J Mol Sci | 2019 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/31013682 |
| Bone protection by inhibition of microRNA-182. | Inoue K, Deng Z, Chen Y, Giannopoulou E, Xu R, Gong S, Greenblatt MB, Mangala LS, Lopez-Berestein G, Kirsch DG, Sood AK, Zhao L, Zhao B | Nature communications | 30291236 | Nat Commun | 2018 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/30291236 |
| Targeting skeletal endothelium to ameliorate bone loss. | Xu R, Yallowitz A, Qin A, Wu Z, Shin DY, Kim JM, Debnath S, Ji G, Bostrom MP, Yang X, Zhang C, Dong H, Kermani P, Lalani S, Li N, Liu Y, Poulos MG, Wach A, Zhang Y, Inoue K, Di Lorenzo A, Zhao B, Butler JM, Shim JH, Glimcher LH, Greenblatt MB | Nature medicine | 29785024 | Nat Med | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29785024 |
| Vascular endothelial growth factor pathway promotes osseointegration and CD31(hi)EMCN(hi) endothelium expansion in a mouse tibial implant model: an animal study. | Ji G, Xu R, Niu Y, Li N, Ivashkiv L, Bostrom MPG, Greenblatt MB, Yang X | The bone & joint journal | 31256654 | Bone Joint J | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31256654 |
| The Unmixing Problem: A Guide to Applying Single-Cell RNA Sequencing to Bone. | Greenblatt MB, Ono N, Ayturk UM, Debnath S, Lalani S | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 31336008 | J Bone Miner Res | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31336008 |
| Osteoclasts are not a source of SLIT3. | Li N, Inoue K, Sun J, Niu Y, Lalani S, Yallowitz A, Yang X, Zhang C, Shen R, Zhao B, Xu R, Greenblatt MB | Bone research | 32133214 | Bone Res | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32133214 |
| Adult stem cells and regenerative medicine-a symposium report. | Cable J, Fuchs E, Weissman I, Jasper H, Glass D, Rando TA, Blau H, Debnath S, Oliva A, Park S, Passegué E, Kim C, Krasnow MA | Annals of the New York Academy of Sciences | 31655007 | Ann N Y Acad Sci | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31655007 |
| c-Jun N-Terminal Kinases (JNKs) Are Critical Mediators of Osteoblast Activity In Vivo. | Xu R, Zhang C, Shin DY, Kim JM, Lalani S, Li N, Yang YS, Liu Y, Eiseman M, Davis RJ, Shim JH, Greenblatt MB | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 28561373 | J Bone Miner Res | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28561373 |
| Bone Turnover Markers in the Diagnosis and Monitoring of Metabolic Bone Disease. | Greenblatt MB, Tsai JN, Wein MN | Clinical chemistry | 27940448 | Clin Chem | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27940448 |
| Osteoblast-Osteoclast Communication and Bone Homeostasis. | Kim JM, Lin C, Stavre Z, Greenblatt MB, Shim JH | Cells | 32927921 | Cells | 2020 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/32927921 |
| MEKK2 mediates aberrant ERK activation in neurofibromatosis type I. | Bok S, Shin DY, Yallowitz AR, Eiseman M, Cung M, Xu R, Li N, Sun J, Williams AL, Scott JE, Su B, Shim JH, Greenblatt MB | Nature communications | 33177525 | Nat Commun | 2020 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/33177525 |
| The performance of artificial intelligence chatbot large language models to address skeletal biology and bone health queries. | Cung M, Sosa B, Yang HS, McDonald MM, Matthews BG, Vlug AG, Imel EA, Wein MN, Stein EM, Greenblatt MB | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 38477743 | J Bone Miner Res | 2024 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/38477743 |
| A Murine Model of Non-Wear-Particle-Induced Aseptic Loosening. | Suhardi V, Oktarina A, Niu Y, Sosa B, Retzky J, Greenblatt M, Ivashkiv L, Bostrom M, Yang X | Biomimetics (Basel, Switzerland) | 39590245 | Biomimetics (Basel) | 2024 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/39590245 |
| Endothelial-specific inhibition of NF-κB enhances functional haematopoiesis. | Poulos MG, Ramalingam P, Gutkin MC, Kleppe M, Ginsberg M, Crowley MJP, Elemento O, Levine RL, Rafii S, Kitajewski J, Greenblatt MB, Shim JH, Butler JM | Nature communications | 28000664 | Nat Commun | 2016 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/28000664 |
| SMURF2 regulates bone homeostasis by disrupting SMAD3 interaction with vitamin D receptor in osteoblasts. | Xu Z, Greenblatt MB, Yan G, Feng H, Sun J, Lotinun S, Brady N, Baron R, Glimcher LH, Zou W | Nature communications | 28216630 | Nat Commun | 2017 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/28216630 |
| Discovery of a Vertebral Skeletal Stem Cell Driving Spinal Metastases. | Sun J, Hu L, Bok S, Yallowitz AR, Cung M, McCormick J, Zheng LJ, Debnath S, Niu Y, Tan AY, Lalani S, Morse KW, Shinn D, Pajak A, Li Z, Li N, Xu R, Iyer S, Greenblatt MB | Research square | 36747772 | Res Sq | 2023 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/36747772 |
| SLITRK5 is a negative regulator of hedgehog signaling in osteoblasts. | Sun J, Shin DY, Eiseman M, Yallowitz AR, Li N, Lalani S, Li Z, Cung M, Bok S, Debnath S, Marquez SJ, White TE, Khan AG, Lorenz IC, Shim JH, Lee FS, Xu R, Greenblatt MB | Nature communications | 34326333 | Nat Commun | 2021 Jul 29 | https://www.ncbi.nlm.nih.gov/pubmed/34326333 |
| RNA-seq Analysis of Peri-Implant Tissue Shows Differences in Immune, Notch, Wnt, and Angiogenesis Pathways in Aged Versus Young Mice. | Turajane K, Ji G, Chinenov Y, Chao M, Ayturk U, Suhardi VJ, Greenblatt MB, Ivashkiv LB, Bostrom MP, Yang X | JBMR plus | 34761143 | JBMR Plus | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34761143 |
| A translational murine model of aseptic loosening with osseointegration failure. | Thomson AL, Suhardi VJ, Niu Y, Oktarina A, Döring K, Chao C, Greenblatt MB, Ivashkiv LB, Bostrom MPG, Yang X | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 38899517 | J Orthop Res | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/38899517 |
| Discovery of a periosteal stem cell mediating intramembranous bone formation. | Debnath S, Yallowitz AR, McCormick J, Lalani S, Zhang T, Xu R, Li N, Liu Y, Yang YS, Eiseman M, Shim JH, Hameed M, Healey JH, Bostrom MP, Landau DA, Greenblatt MB | Nature | 30250253 | Nature | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30250253 |
| TAOK3 is a MAP3K contributing to osteoblast differentiation and skeletal mineralization. | Li Z, Oh H, Cung M, Marquez SJ, Sun J, Hammad H, Janssens S, Pouliot P, Lambrecht BN, Yang YS, Shim JH, Greenblatt MB | Biochemical and biophysical research communications | 32807497 | Biochem Biophys Res Commun | 2020 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/32807497 |
| Systemic Adeno-Associated Virus-Mediated Gene Therapy Prevents the Multiorgan Disorders Associated with Aldehyde Dehydrogenase 2 Deficiency and Chronic Ethanol Ingestion. | Matsumura Y, Li N, Alwaseem H, Pagovich OE, Crystal RG, Greenblatt MB, Stiles KM | Human gene therapy | 31801381 | Hum Gene Ther | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31801381 |
| A multi-stem cell basis for craniosynostosis and calvarial mineralization. | Bok S, Yallowitz AR, Sun J, McCormick J, Cung M, Hu L, Lalani S, Li Z, Sosa BR, Baumgartner T, Byrne P, Zhang T, Morse KW, Mohamed FF, Ge C, Franceschi RT, Cowling RT, Greenberg BH, Pisapia DJ, Imahiyerobo TA, Lakhani S, Ross ME, Hoffman CE, Debnath S, Greenblatt MB | Nature | 37730988 | Nature | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37730988 |
| Multidimensional Tracking of GPCR Signaling via Peroxidase-Catalyzed Proximity Labeling. | Paek J, Kalocsay M, Staus DP, Wingler L, Pascolutti R, Paulo JA, Gygi SP, Kruse AC | Cell | 28388415 | Cell | 2017 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/28388415 |
| Angiotensin and biased analogs induce structurally distinct active conformations within a GPCR. | Wingler LM, Skiba MA, McMahon C, Staus DP, Kleinhenz ALW, Suomivuori CM, Latorraca NR, Dror RO, Lefkowitz RJ, Kruse AC | Science (New York, N.Y.) | 32079768 | Science | 2020 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/32079768 |
| Structure and Dynamics of PD-L1 and an Ultra-High-Affinity PD-1 Receptor Mutant. | Pascolutti R, Sun X, Kao J, Maute RL, Ring AM, Bowman GR, Kruse AC | Structure (London, England : 1993) | 27618663 | Structure | 2016 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/27618663 |
| Molecular mechanism of biased signaling in a prototypical G protein-coupled receptor. | Suomivuori CM, Latorraca NR, Wingler LM, Eismann S, King MC, Kleinhenz ALW, Skiba MA, Staus DP, Kruse AC, Lefkowitz RJ, Dror RO | Science (New York, N.Y.) | 32079767 | Science | 2020 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/32079767 |
| Antibodies Expand the Scope of Angiotensin Receptor Pharmacology. | Skiba MA, Sterling SM, Rawson S, Gilman MSA, Xu H, Nemeth GR, Hurley JD, Shen P, Staus DP, Kim J, McMahon C, Lehtinen MK, Wingler LM, Kruse AC | bioRxiv : the preprint server for biology | 37662341 | bioRxiv | 2023 Aug 24 | https://www.ncbi.nlm.nih.gov/pubmed/37662341 |
| Rapid generation of potent antibodies by autonomous hypermutation in yeast. | Wellner A, McMahon C, Gilman MSA, Clements JR, Clark S, Nguyen KM, Ho MH, Hu VJ, Shin JE, Feldman J, Hauser BM, Caradonna TM, Wingler LM, Schmidt AG, Marks DS, Abraham J, Kruse AC, Liu CC | Nature chemical biology | 34168368 | Nat Chem Biol | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/34168368 |
| Distinctive Activation Mechanism for Angiotensin Receptor Revealed by a Synthetic Nanobody. | Wingler LM, McMahon C, Staus DP, Lefkowitz RJ, Kruse AC | Cell | 30639100 | Cell | 2019 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/30639100 |
| Identification of the gene that codes for the σ(2) receptor. | Alon A, Schmidt HR, Wood MD, Sahn JJ, Martin SF, Kruse AC | Proceedings of the National Academy of Sciences of the United States of America | 28559337 | Proc Natl Acad Sci U S A | 2017 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/28559337 |
| Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket. | Zimmerman B, Kelly B, McMillan BJ, Seegar TCM, Dror RO, Kruse AC, Blacklow SC | Cell | 27881302 | Cell | 2016 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/27881302 |
| Synthetic nanobodies as angiotensin receptor blockers. | McMahon C, Staus DP, Wingler LM, Wang J, Skiba MA, Elgeti M, Hubbell WL, Rockman HA, Kruse AC, Lefkowitz RJ | Proceedings of the National Academy of Sciences of the United States of America | 32753386 | Proc Natl Acad Sci U S A | 2020 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/32753386 |
| Mapping and engineering the interaction between adiponectin and T-cadherin. | Pascolutti R, Erlandson SC, Burri DJ, Zheng S, Kruse AC | The Journal of biological chemistry | 31915248 | J Biol Chem | 2020 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/31915248 |
| Cryo-EM structure of the B cell co-receptor CD19 bound to the tetraspanin CD81. | Susa KJ, Rawson S, Kruse AC, Blacklow SC | Science (New York, N.Y.) | 33446559 | Science | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/33446559 |
| Antibodies expand the scope of angiotensin receptor pharmacology. | Skiba MA, Sterling SM, Rawson S, Zhang S, Xu H, Jiang H, Nemeth GR, Gilman MSA, Hurley JD, Shen P, Staus DP, Kim J, McMahon C, Lehtinen MK, Rockman HA, Barth P, Wingler LM, Kruse AC | Nature chemical biology | 38744986 | Nat Chem Biol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38744986 |
| CRISPR control of virulence in Pseudomonas aeruginosa. | Wiedenheft B, Bondy-Denomy J | Cell research | 28084330 | Cell Res | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/28084330 |
| Protein Inhibitors of CRISPR-Cas9. | Bondy-Denomy J | ACS chemical biology | 29251498 | ACS Chem Biol | 2018 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/29251498 |
| Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer. | Mahendra C, Christie KA, Osuna BA, Pinilla-Redondo R, Kleinstiver BP, Bondy-Denomy J | Nature microbiology | 32218510 | Nat Microbiol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32218510 |
| Lack of Cas13a inhibition by anti-CRISPR proteins from Leptotrichia prophages. | Johnson MC, Hille LT, Kleinstiver BP, Meeske AJ, Bondy-Denomy J | Molecular cell | 35623354 | Mol Cell | 2022 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/35623354 |
| The diversity-generating benefits of a prokaryotic adaptive immune system. | van Houte S, Ekroth AK, Broniewski JM, Chabas H, Ashby B, Bondy-Denomy J, Gandon S, Boots M, Paterson S, Buckling A, Westra ER | Nature | 27074511 | Nature | 2016 Apr 21 | https://www.ncbi.nlm.nih.gov/pubmed/27074511 |
| Anti-CRISPRs go viral: The infection biology of CRISPR-Cas inhibitors. | Li Y, Bondy-Denomy J | Cell host & microbe | 33444542 | Cell Host Microbe | 2021 May 12 | https://www.ncbi.nlm.nih.gov/pubmed/33444542 |
| CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog. | Soto-Perez P, Bisanz JE, Berry JD, Lam KN, Bondy-Denomy J, Turnbaugh PJ | Cell host & microbe | 31492655 | Cell Host Microbe | 2019 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/31492655 |
| A compact Cascade-Cas3 system for targeted genome engineering. | Csörgő B, León LM, Chau-Ly IJ, Vasquez-Rifo A, Berry JD, Mahendra C, Crawford ED, Lewis JD, Bondy-Denomy J | Nature methods | 33077967 | Nat Methods | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33077967 |
| The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs. | Borges AL, Davidson AR, Bondy-Denomy J | Annual review of virology | 28749735 | Annu Rev Virol | 2017 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/28749735 |
| Cas13 Helps Bacteria Play Dead when the Enemy Strikes. | Mendoza SD, Bondy-Denomy J | Cell host & microbe | 31295418 | Cell Host Microbe | 2019 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/31295418 |
| A bacteriophage nucleus-like compartment shields DNA from CRISPR nucleases. | Mendoza SD, Nieweglowska ES, Govindarajan S, Leon LM, Berry JD, Tiwari A, Chaikeeratisak V, Pogliano J, Agard DA, Bondy-Denomy J | Nature | 31819262 | Nature | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31819262 |
| Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity. | Borges AL, Castro B, Govindarajan S, Solvik T, Escalante V, Bondy-Denomy J | Nature microbiology | 32203410 | Nat Microbiol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32203410 |
| Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements. | Pinilla-Redondo R, Shehreen S, Marino ND, Fagerlund RD, Brown CM, Sørensen SJ, Fineran PC, Bondy-Denomy J | Nature communications | 33159058 | Nat Commun | 2020 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/33159058 |
| Inhibition of CRISPR-Cas9 with Bacteriophage Proteins. | Rauch BJ, Silvis MR, Hultquist JF, Waters CS, McGregor MJ, Krogan NJ, Bondy-Denomy J | Cell | 28041849 | Cell | 2017 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/28041849 |
| Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity. | Borges AL, Zhang JY, Rollins MF, Osuna BA, Wiedenheft B, Bondy-Denomy J | Cell | 30033364 | Cell | 2018 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/30033364 |
| Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. | Roux S, Krupovic M, Daly RA, Borges AL, Nayfach S, Schulz F, Sharrar A, Matheus Carnevali PB, Cheng JF, Ivanova NN, Bondy-Denomy J, Wrighton KC, Woyke T, Visel A, Kyrpides NC, Eloe-Fadrosh EA | Nature microbiology | 31332386 | Nat Microbiol | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31332386 |
| Anti-CRISPR-Associated Proteins Are Crucial Repressors of Anti-CRISPR Transcription. | Stanley SY, Borges AL, Chen KH, Swaney DL, Krogan NJ, Bondy-Denomy J, Davidson AR | Cell | 31474367 | Cell | 2019 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/31474367 |
| Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex. | Chowdhury S, Carter J, Rollins MF, Golden SM, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B | Cell | 28340349 | Cell | 2017 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/28340349 |
| Quorum sensing controls the Pseudomonas aeruginosa CRISPR-Cas adaptive immune system. | Høyland-Kroghsbo NM, Paczkowski J, Mukherjee S, Broniewski J, Westra E, Bondy-Denomy J, Bassler BL | Proceedings of the National Academy of Sciences of the United States of America | 27849583 | Proc Natl Acad Sci U S A | 2017 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/27849583 |
| Cas1 and the Csy complex are opposing regulators of Cas2/3 nuclease activity. | Rollins MF, Chowdhury S, Carter J, Golden SM, Wilkinson RA, Bondy-Denomy J, Lander GC, Wiedenheft B | Proceedings of the National Academy of Sciences of the United States of America | 28438998 | Proc Natl Acad Sci U S A | 2017 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/28438998 |
| Disabling Cas9 by an anti-CRISPR DNA mimic. | Shin J, Jiang F, Liu JJ, Bray NL, Rauch BJ, Baik SH, Nogales E, Bondy-Denomy J, Corn JE, Doudna JA | Science advances | 28706995 | Sci Adv | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28706995 |
| A Type IV-A CRISPR-Cas System in Pseudomonas aeruginosa Mediates RNA-Guided Plasmid Interference In Vivo. | Crowley VM, Catching A, Taylor HN, Borges AL, Metcalf J, Bondy-Denomy J, Jackson RN | The CRISPR journal | 31809194 | CRISPR J | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31809194 |
| Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies. | Marino ND, Pinilla-Redondo R, Csörgő B, Bondy-Denomy J | Nature methods | 32203383 | Nat Methods | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32203383 |
| Structures and Strategies of Anti-CRISPR-Mediated Immune Suppression. | Wiegand T, Karambelkar S, Bondy-Denomy J, Wiedenheft B | Annual review of microbiology | 32503371 | Annu Rev Microbiol | 2020 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/32503371 |
| Temperature-Responsive Competitive Inhibition of CRISPR-Cas9. | Jiang F, Liu JJ, Osuna BA, Xu M, Berry JD, Rauch BJ, Nogales E, Bondy-Denomy J, Doudna JA | Molecular cell | 30595438 | Mol Cell | 2019 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/30595438 |
| Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems. | Taylor HN, Laderman E, Armbrust M, Hallmark T, Keiser D, Bondy-Denomy J, Jackson RN | Frontiers in microbiology | 34093491 | Front Microbiol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34093491 |
| Mobile element warfare via CRISPR and anti-CRISPR in Pseudomonas aeruginosa. | León LM, Park AE, Borges AL, Zhang JY, Bondy-Denomy J | Nucleic acids research | 33544853 | Nucleic Acids Res | 2021 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/33544853 |
| How bacteria control the CRISPR-Cas arsenal. | Leon LM, Mendoza SD, Bondy-Denomy J | Current opinion in microbiology | 29169146 | Curr Opin Microbiol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29169146 |
| Discovery of widespread type I and type V CRISPR-Cas inhibitors. | Marino ND, Zhang JY, Borges AL, Sousa AA, Leon LM, Rauch BJ, Walton RT, Berry JD, Joung JK, Kleinstiver BP, Bondy-Denomy J | Science (New York, N.Y.) | 30190308 | Science | 2018 Oct 12 | https://www.ncbi.nlm.nih.gov/pubmed/30190308 |
| Critical Anti-CRISPR Locus Repression by a Bi-functional Cas9 Inhibitor. | Osuna BA, Karambelkar S, Mahendra C, Sarbach A, Johnson MC, Kilcher S, Bondy-Denomy J | Cell host & microbe | 32325051 | Cell Host Microbe | 2020 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/32325051 |
| Listeria Phages Induce Cas9 Degradation to Protect Lysogenic Genomes. | Osuna BA, Karambelkar S, Mahendra C, Christie KA, Garcia B, Davidson AR, Kleinstiver BP, Kilcher S, Bondy-Denomy J | Cell host & microbe | 32325050 | Cell Host Microbe | 2020 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/32325050 |
| Intracellular Organization by Jumbo Bacteriophages. | Guan J, Bondy-Denomy J | Journal of bacteriology | 32868402 | J Bacteriol | 2020 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/32868402 |
| CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity. | Marino ND, Pinilla-Redondo R, Bondy-Denomy J | Nucleic acids research | 35670674 | Nucleic Acids Res | 2022 Jun 24 | https://www.ncbi.nlm.nih.gov/pubmed/35670674 |
| Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria. | Govindarajan S, Borges A, Karambelkar S, Bondy-Denomy J | Journal of bacteriology | 35389256 | J Bacteriol | 2022 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/35389256 |
| Shale Gas Development and Drinking Water Quality. | Hill E, Ma L | The American economic review | 29430021 | Am Econ Rev | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/29430021 |
| Drinking water, fracking, and infant health. | Hill EL, Ma L | Journal of health economics | 35172241 | J Health Econ | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35172241 |
| Rural Light Pollution from Shale Gas Development and Associated Sleep and Subjective Well-Being. | Boslett A, Hill E, Ma L, Zhang L | Resource and energy economics | 36643952 | Resour Energy Econ | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/36643952 |
| Using contributing causes of death improves prediction of opioid involvement in unclassified drug overdoses in US death records. | Boslett AJ, Denham A, Hill EL | Addiction (Abingdon, England) | 32106355 | Addiction | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32106355 |
| Associations between residential proximity to oil and gas extraction and hypertensive conditions during pregnancy: a difference-in-differences analysis in Texas, 1996-2009. | Willis MD, Hill EL, Kile ML, Carozza S, Hystad P | International journal of epidemiology | 34897479 | Int J Epidemiol | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/34897479 |
| The National COVID Cohort Collaborative: Clinical Characterization and Early Severity Prediction. | Bennett TD, Moffitt RA, Hajagos JG, Amor B, Anand A, Bissell MM, Bradwell KR, Bremer C, Byrd JB, Denham A, DeWitt PE, Gabriel D, Garibaldi BT, Girvin AT, Guinney J, Hill EL, Hong SS, Jimenez H, Kavuluru R, Kostka K, Lehmann HP, Levitt E, Mallipattu SK, Manna A, McMurry JA, Morris M, Muschelli J, Neumann AJ, Palchuk MB, Pfaff ER, Qian Z, Qureshi N, Russell S, Spratt H, Walden A, Williams AE, Wooldridge JT, Yoo YJ, Zhang XT, Zhu RL, Austin CP, Saltz JH, Gersing KR, Haendel MA, Chute CG, N3C Consortium | medRxiv : the preprint server for health sciences | 33469592 | medRxiv | 2021 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/33469592 |
| Acute myocardial infarction associated with unconventional natural gas development: A natural experiment. | Denham A, Willis MD, Croft DP, Liu L, Hill EL | Environmental research | 33581094 | Environ Res | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33581094 |
| The fracking concern with water quality. | Hill E, Ma L | Science (New York, N.Y.) | 34413223 | Science | 2021 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/34413223 |
| Natural gas development, flaring practices and paediatric asthma hospitalizations in Texas. | Willis M, Hystad P, Denham A, Hill E | International journal of epidemiology | 32879945 | Int J Epidemiol | 2021 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/32879945 |
| Drinking Water Contaminant Concentrations and Birth Outcomes. | DiSalvo RW, Hill EL | Journal of policy analysis and management : [the journal of the Association for Public Policy Analysis and Management] | 38983462 | J Policy Anal Manage | 2024 Spring | https://www.ncbi.nlm.nih.gov/pubmed/38983462 |
| Shale gas development and infant health: Evidence from Pennsylvania. | Hill EL | Journal of health economics | 30114565 | J Health Econ | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30114565 |
| Shale gas transmission and housing prices. | Boslett A, Hill E | Resource and energy economics | 36620650 | Resour Energy Econ | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36620650 |
| Mortality during Resource Booms and Busts. | Boslett A, Hill E | Journal of environmental economics and management | 36643912 | J Environ Econ Manage | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36643912 |
| Unconventional natural gas development and hospitalizations: evidence from Pennsylvania, United States, 2003-2014. | Denham A, Willis M, Zavez A, Hill E | Public health | 30677623 | Public Health | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30677623 |
| Fatal opioid overdoses in the U.S. declined more than reported between 2017 and 2018. | Boslett A, Denham A, Hill E | The American journal of drug and alcohol abuse | 34107224 | Am J Drug Alcohol Abuse | 2021 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34107224 |
| Associations between Residential Proximity to Oil and Gas Drilling and Term Birth Weight and Small-for-Gestational-Age Infants in Texas: A Difference-in-Differences Analysis. | Willis MD, Hill EL, Boslett A, Kile ML, Carozza SE, Hystad P | Environmental health perspectives | 34287013 | Environ Health Perspect | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34287013 |
| Unconventional natural gas development and pediatric asthma hospitalizations in Pennsylvania. | Willis MD, Jusko TA, Halterman JS, Hill EL | Environmental research | 29936288 | Environ Res | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/29936288 |
| Unclassified drug overdose deaths in the opioid crisis: emerging patterns of inequity. | Boslett AJ, Denham A, Hill EL, Adams MCB | Journal of the American Medical Informatics Association : JAMIA | 31034076 | J Am Med Inform Assoc | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31034076 |
| Social distancing merely stabilized COVID-19 in the United States. | Wagner AB, Hill EL, Ryan SE, Sun Z, Deng G, Bhadane S, Hernandez Martinez V, Wu P, Li D, Anand A, Acharya J, Matteson DS | Stat (International Statistical Institute) | 32837718 | Stat (Int Stat Inst) | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32837718 |
| Where you drink water: An assessment of the Tennessee, USA public water supply. | Ding KJ, Hornberger G, Hill E, McDonald YJ | Water | 37476080 | Water (Basel) | 2022 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/37476080 |
| Mortality among US veterans after emergency visits to Veterans Affairs and other hospitals: retrospective cohort study. | Chan DC, Danesh K, Costantini S, Card D, Taylor L, Studdert DM | BMJ (Clinical research ed.) | 35173019 | BMJ | 2022 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/35173019 |
| Accuracy of Valuations of Surgical Procedures in the Medicare Fee Schedule. | Chan DC, Huynh J, Studdert DM | The New England journal of medicine | 30995374 | N Engl J Med | 2019 Apr 18 | https://www.ncbi.nlm.nih.gov/pubmed/30995374 |
| Selection with Variation in Diagnostic Skill: Evidence from Radiologists. | Chan DC, Gentzkow M, Yu C | The quarterly journal of economics | 35422677 | Q J Econ | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35422677 |
| full-FORCE: A target-based method for training recurrent networks. | DePasquale B, Cueva CJ, Rajan K, Escola GS, Abbott LF | PloS one | 29415041 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29415041 |
| Local online learning in recurrent networks with random feedback. | Murray JM | eLife | 31124785 | Elife | 2019 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/31124785 |
| Learning multiple variable-speed sequences in striatum via cortical tutoring. | Murray JM, Escola GS | eLife | 28481200 | Elife | 2017 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/28481200 |
| Remembrance of things practiced with fast and slow learning in cortical and subcortical pathways. | Murray JM, Escola GS | Nature communications | 33361766 | Nat Commun | 2020 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/33361766 |
| Thalamic control of cortical dynamics in a model of flexible motor sequencing. | Logiaco L, Abbott LF, Escola S | Cell reports | 34077721 | Cell Rep | 2021 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/34077721 |
| Developing and deploying a community healthcare worker-driven, digitally- enabled integrated care system for municipalities in rural Nepal. | Citrin D, Thapa P, Nirola I, Pandey S, Kunwar LB, Tenpa J, Acharya B, Rayamazi H, Thapa A, Maru S, Raut A, Poudel S, Timilsina D, Dhungana SK, Adhikari M, Khanal MN, Pratap Kc N, Acharya B, Karki KB, Singh DR, Bangura AH, Wacksman J, Storisteanu D, Halliday S, Schwarz R, Schwarz D, Choudhury N, Kumar A, Wu WJ, Kalaunee SP, Chaudhari P, Maru D | Healthcare (Amsterdam, Netherlands) | 29880283 | Healthc (Amst) | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29880283 |
| Practical issues in the measurement of child survival in health systems trials: experience developing a digital community-based mortality surveillance programme in rural Nepal. | Harsha Bangura A, Ozonoff A, Citrin D, Thapa P, Nirola I, Maru S, Schwarz R, Raut A, Belbase B, Halliday S, Adhikari M, Maru D | BMJ global health | 28588974 | BMJ Glob Health | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28588974 |
| Treatment recommendations made by a consultant psychiatrist to improve the quality of care in a collaborative mental health intervention in rural Nepal. | Rimal P, Maru D, Chwastiak L, Agrawal P, Rao D, Swar S, Citrin D, Acharya B | BMC psychiatry | 32024490 | BMC Psychiatry | 2020 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/32024490 |
| Delivering Collaborative Care in Rural Settings: Integrating Remote Teleconsultation and Local Supervision in Rural Nepal. | Swar S, Rimal P, Gauchan B, Maru D, Yang Y, Acharya B | Psychiatric services (Washington, D.C.) | 30220241 | Psychiatr Serv | 2019 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/30220241 |
| Power, potential, and pitfalls in global health academic partnerships: review and reflections on an approach in Nepal. | Citrin D, Mehanni S, Acharya B, Wong L, Nirola I, Sherchan R, Gauchan B, Karki KB, Singh DR, Shamasunder S, Le P, Schwarz D, Schwarz R, Dangal B, Dhungana SK, Maru S, Mahar R, Thapa P, Raut A, Adhikari M, Basnett I, Kaluanee SP, Deukmedjian G, Halliday S, Maru D | Global health action | 28914185 | Glob Health Action | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28914185 |
| Designing and implementing an integrated non-communicable disease primary care intervention in rural Nepal. | Kumar A, Schwarz D, Acharya B, Agrawal P, Aryal A, Choudhury N, Citrin D, Dangal B, Deukmedjian G, Dhimal M, Dhungana S, Gauchan B, Gupta T, Halliday S, Jha D, Kalaunee SP, Karmacharya B, Kishore S, Koirala B, Kunwar L, Mahar R, Maru S, Mehanni S, Nirola I, Pandey S, Pant B, Pathak M, Poudel S, Rajbhandari I, Raut A, Rimal P, Schwarz R, Shrestha A, Thapa A, Thapa P, Thapa R, Wong L, Maru D | BMJ global health | 31139453 | BMJ Glob Health | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31139453 |
| Implementing a quality improvement initiative for the management of chronic obstructive pulmonary disease in rural Nepal. | Mehanni S, Jha D, Kumar A, Choudhury N, Dangal B, Deukmedjian G, Dhungana SK, Gauchan B, Gupta TK, Halliday S, Kalaunee SP, Mahar R, Poudel S, Raut A, Schwarz R, Singh DR, Thapa A, Thapa R, Wong L, Maru D, Schwarz D | BMJ open quality | 31259269 | BMJ Open Qual | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31259269 |
| Impact of the roll out of comprehensive emergency obstetric care on institutional birth rate in rural Nepal. | Maru S, Bangura AH, Mehta P, Bista D, Borgatta L, Pande S, Citrin D, Khanal S, Banstola A, Maru D | BMC pregnancy and childbirth | 28259150 | BMC Pregnancy Childbirth | 2017 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/28259150 |
| Costing Analysis of a Pilot Community Health Worker Program in Rural Nepal. | Nepal P, Schwarz R, Citrin D, Thapa A, Acharya B, Acharya Y, Aryal A, Baum A, Bhandari V, Bhatt L, Bhattarai D, Choudhury N, Dangal B, Dhimal M, Dhungana SK, Gauchan B, Halliday S, Kalaunee SP, Kunwar LB, Maru D, Nirola I, Paudel R, Raut A, Rayamazi HJ, Sapkota S, Schwarz D, Thapa P, Thapa P, Tiwari A, Tuitui R, Walter E, Maru S | Global health, science and practice | 32606093 | Glob Health Sci Pract | 2020 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/32606093 |
| Community-based postpartum contraceptive counselling in rural Nepal: a mixed-methods evaluation. | Wu WJ, Tiwari A, Choudhury N, Basnett I, Bhatt R, Citrin D, Halliday S, Kunwar L, Maru D, Nirola I, Pandey S, Rayamazi HJ, Sapkota S, Saud S, Thapa A, Goldberg A, Maru S | Sexual and reproductive health matters | 32546070 | Sex Reprod Health Matters | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32546070 |
| A Type II hybrid effectiveness-implementation study of an integrated CHW intervention to address maternal healthcare in rural Nepal. | Tiwari A, Thapa A, Choudhury N, Khatri R, Sapkota S, Wu WJ, Halliday S, Citrin D, Schwarz R, Maru D, Rayamazi HJ, Paudel R, Bhatt LD, Bhandari V, Marasini N, Khadka S, Bogati B, Saud S, Kshetri YKB, Bhatta A, Magar KR, Shrestha R, Kafle R, Poudel R, Gautam S, Basnett I, Shrestha GN, Nirola I, Adhikari S, Thapa P, Kunwar L, Maru S | PLOS global public health | 36963046 | PLOS Glob Public Health | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36963046 |
| The power of peers: an effectiveness evaluation of a cluster-controlled trial of group antenatal care in rural Nepal. | Thapa P, Bangura AH, Nirola I, Citrin D, Belbase B, Bogati B, Nirmala BK, Khadka S, Kunwar L, Halliday S, Choudhury N, Ozonoff A, Tenpa J, Schwarz R, Adhikari M, Kalaunee SP, Rising S, Maru D, Maru S | Reproductive health | 31640770 | Reprod Health | 2019 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/31640770 |
| Measuring fidelity, feasibility, costs: an implementation evaluation of a cluster-controlled trial of group antenatal care in rural Nepal. | Harsha Bangura A, Nirola I, Thapa P, Citrin D, Belbase B, Bogati B, B K N, Khadka S, Kunwar L, Halliday S, Choudhury N, Schwarz R, Adhikari M, Kalaunee SP, Rising S, Maru D, Maru S | Reproductive health | 31952543 | Reprod Health | 2020 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/31952543 |
| Design and implementation of an affordable, public sector electronic medical record in rural Nepal. | Raut A, Yarbrough C, Singh V, Gauchan B, Citrin D, Verma V, Hawley J, Schwarz D, Harsha Bangura A, Shrestha B, Schwarz R, Adhikari M, Maru D | Journal of innovation in health informatics | 28749321 | J Innov Health Inform | 2017 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/28749321 |
| Accountable Care Reforms Improve Women's And Children's Health In Nepal. | Maru D, Maru S, Nirola I, Gonzalez-Smith J, Thoumi A, Nepal P, Chaudary P, Basnett I, Udayakumar K, McClellan M | Health affairs (Project Hope) | 29137510 | Health Aff (Millwood) | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/29137510 |
| An integrated community health worker intervention in rural Nepal: a type 2 hybrid effectiveness-implementation study protocol. | Maru S, Nirola I, Thapa A, Thapa P, Kunwar L, Wu WJ, Halliday S, Citrin D, Schwarz R, Basnett I, Kc N, Karki K, Chaudhari P, Maru D | Implementation science : IS | 29598824 | Implement Sci | 2018 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/29598824 |
| An integrated intervention for chronic care management in rural Nepal: protocol of a type 2 hybrid effectiveness-implementation study. | Schwarz D, Dhungana S, Kumar A, Acharya B, Agrawal P, Aryal A, Baum A, Choudhury N, Citrin D, Dangal B, Dhimal M, Gauchan B, Gupta T, Halliday S, Karmacharya B, Kishore S, Koirala B, Kshatriya U, Levine E, Maru S, Rimal P, Sapkota S, Schwarz R, Shrestha A, Thapa A, Maru D | Trials | 31996250 | Trials | 2020 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/31996250 |
| Comparing two data collection methods to track vital events in maternal and child health via community health workers in rural Nepal. | Choudhury N, Tiwari A, Wu WJ, Bhandari V, Bhatta L, Bogati B, Citrin D, Halliday S, Khadka S, Marasini N, Pandey S, Ballard M, Rayamazi HJ, Sapkota S, Schwarz R, Sullivan L, Maru D, Thapa A, Maru S | Population health metrics | 35897038 | Popul Health Metr | 2022 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/35897038 |
| Determinants of severe dehydration from diarrheal disease at hospital presentation: Evidence from 22 years of admissions in Bangladesh. | Andrews JR, Leung DT, Ahmed S, Malek MA, Ahmed D, Begum YA, Qadri F, Ahmed T, Faruque ASG, Nelson EJ | PLoS neglected tropical diseases | 28448489 | PLoS Negl Trop Dis | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28448489 |
| Identification of Widespread Antibiotic Exposure in Patients With Cholera Correlates With Clinically Relevant Microbiota Changes. | Alexandrova L, Haque F, Rodriguez P, Marrazzo AC, Grembi JA, Ramachandran V, Hryckowian AJ, Adams CM, Siddique MSA, Khan AI, Qadri F, Andrews JR, Rahman M, Spormann AM, Schoolnik GK, Chien A, Nelson EJ | The Journal of infectious diseases | 31192364 | J Infect Dis | 2019 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/31192364 |
| Gold Standard Cholera Diagnostics Are Tarnished by Lytic Bacteriophage and Antibiotics. | Nelson EJ, Grembi JA, Chao DL, Andrews JR, Alexandrova L, Rodriguez PH, Ramachandran VV, Sayeed MA, Wamala JF, Debes AK, Sack DA, Hryckowian AJ, Haque F, Khatun S, Rahman M, Chien A, Spormann AM, Schoolnik GK | Journal of clinical microbiology | 32611794 | J Clin Microbiol | 2020 Aug 24 | https://www.ncbi.nlm.nih.gov/pubmed/32611794 |
| Improving Antibiotic Stewardship for Diarrheal Disease With Probability-Based Electronic Clinical Decision Support: A Randomized Crossover Trial. | Nelson EJ, Khan AI, Keita AM, Brintz BJ, Keita Y, Sanogo D, Islam MT, Khan ZH, Rashid MM, Nasrin D, Watt MH, Ahmed SM, Haaland B, Pavia AT, Levine AC, Chao DL, Kotloff KL, Qadri F, Sow SO, Leung DT | JAMA pediatrics | 36036920 | JAMA Pediatr | 2022 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/36036920 |
| Implementation of a Pediatric Telemedicine and Medication Delivery Service in a Resource-limited Setting: A Pilot Study for Clinical Safety and Feasibility. | Klarman MB, Flaherty KE, Chi X, Cajusma Y, Capois AC, Vladimir Dofiné MD, Exantus L, Friesen J, Beau de Rochars VM, Baril C, Gurka MJ, Becker TK, Nelson EJ | The Journal of pediatrics | 36528053 | J Pediatr | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36528053 |
| Genome-wide association studies reveal distinct genetic correlates and increased heritability of antimicrobial resistance in Vibrio cholerae under anaerobic conditions. | Creasy-Marrazzo A, Saber MM, Kamat M, Bailey LS, Brinkley L, Cato E, Begum Y, Rashid MM, Khan AI, Qadri F, Basso KB, Shapiro BJ, Nelson EJ | Microbial genomics | 36748512 | Microb Genom | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36748512 |
| Opportunities to catalyse improved healthcare access in pluralistic systems: a cross-sectional study in Haiti. | Klarman M, Schon J, Cajusma Y, Maples S, Beau de Rochars VEM, Baril C, Nelson EJ | BMJ open | 34810180 | BMJ Open | 2021 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/34810180 |
| High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh. | Flaherty KE, Grembi JA, Ramachandran VV, Haque F, Khatun S, Rahman M, Maples S, Becker TK, Spormann AM, Schoolnik GK, Hryckowian AJ, Nelson EJ | PloS one | 34597302 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34597302 |
| Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions. | Hryckowian AJ, Merrill BD, Porter NT, Van Treuren W, Nelson EJ, Garlena RA, Russell DA, Martens EC, Sonnenburg JL | Cell host & microbe | 32652063 | Cell Host Microbe | 2020 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/32652063 |
| Toxigenic Vibrio cholerae evolution and establishment of reservoirs in aquatic ecosystems. | Mavian C, Paisie TK, Alam MT, Browne C, Beau De Rochars VM, Nembrini S, Cash MN, Nelson EJ, Azarian T, Ali A, Morris JG Jr, Salemi M | Proceedings of the National Academy of Sciences of the United States of America | 32229557 | Proc Natl Acad Sci U S A | 2020 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/32229557 |
| Electronic decision support and diarrhoeal disease guideline adherence (mHDM): a cluster randomised controlled trial. | Khan AI, Mack JA, Salimuzzaman M, Zion MI, Sujon H, Ball RL, Maples S, Rashid MM, Chisti MJ, Sarker SA, Biswas D, Hossin R, Bardosh KL, Begum YA, Ahmed A, Pieri D, Haque F, Rahman M, Levine AC, Qadri F, Flora MS, Gurka MJ, Nelson EJ | The Lancet. Digital health | 33328057 | Lancet Digit Health | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/33328057 |
| Clinical predictors for etiology of acute diarrhea in children in resource-limited settings. | Brintz BJ, Howard JI, Haaland B, Platts-Mills JA, Greene T, Levine AC, Nelson EJ, Pavia AT, Kotloff KL, Leung DT | PLoS neglected tropical diseases | 33035209 | PLoS Negl Trop Dis | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33035209 |
| External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali. | Garbern SC, Nelson EJ, Nasrin S, Keita AM, Brintz BJ, Gainey M, Badji H, Nasrin D, Howard J, Taniuchi M, Platts-Mills JA, Kotloff KL, Haque R, Levine AC, Sow SO, Alam NH, Leung DT | eLife | 35137684 | Elife | 2022 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/35137684 |
| Development and evaluation of a clinical guideline for a paediatric telemedicine service in a low-resource setting. | Klarman MB, Chi X, Cajusma Y, Flaherty KE, Capois AC, Dofiné MDV, Exantus L, Friesen J, Beau de Rochars VM, Becker T, Baril C, Gurka MJ, Nelson EJ | BMJ paediatrics open | 38191203 | BMJ Paediatr Open | 2024 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/38191203 |
| Evaluation of a Scalable Design for a Pediatric Telemedicine and Medication Delivery Service: A Prospective Cohort Study in Haiti. | Klarman MB, Chi X, Cajusma Y, Flaherty KE, Beausejour JR, Exantus L, Beau de Rochars VM, Baril C, Becker TK, Gurka MJ, Nelson EJ | The American journal of tropical medicine and hygiene | 40555201 | Am J Trop Med Hyg | 2025 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/40555201 |
| Development of an AI-enabled predictive model to identify the 'sick child' at a pediatric telemedicine and medication delivery service in Haiti. | Brintz BJ, Klarman MB, Cajusma Y, Exantus L, Beausejour JR, Flaherty KE, Beau de Rochars VM, Baril C, Nelson EJ | medRxiv : the preprint server for health sciences | 40630578 | medRxiv | 2025 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/40630578 |
| Is a Cholera Outbreak Preventable in Post-earthquake Nepal? | Nelson EJ, Andrews JR, Maples S, Barry M, Clemens JD | PLoS neglected tropical diseases | 26270343 | PLoS Negl Trop Dis | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26270343 |
| Evaluation of a Smartphone Decision-Support Tool for Diarrheal Disease Management in a Resource-Limited Setting. | Haque F, Ball RL, Khatun S, Ahmed M, Kache S, Chisti MJ, Sarker SA, Maples SD, Pieri D, Vardhan Korrapati T, Sarnquist C, Federspiel N, Rahman MW, Andrews JR, Rahman M, Nelson EJ | PLoS neglected tropical diseases | 28103233 | PLoS Negl Trop Dis | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28103233 |
| Derivation and external validation of a clinical prognostic model identifying children at risk of death following presentation for diarrheal care. | Ahmed SM, Brintz BJ, Talbert A, Ngari M, Pavlinac PB, Platts-Mills JA, Levine AC, Nelson EJ, Walson JL, Kotloff KL, Berkley JA, Leung DT | medRxiv : the preprint server for health sciences | 36798150 | medRxiv | 2023 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/36798150 |
| Socioeconomic Determinants of Cipro-floxacin-Resistant Shigella Infections in Bangladeshi Children. | Gruninger RJ, Johnson RA, Das SK, Nelson EJ, Spivak ES, Contreras JR, Faruque ASG, Leung DT | Pathogens & immunity | 28603782 | Pathog Immun | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28603782 |
| Evaluation of Standard and Mobile Health-Supported Clinical Diagnostic Tools for Assessing Dehydration in Patients with Diarrhea in Rural Bangladesh. | Bilal S, Nelson E, Meisner L, Alam M, Al Amin S, Ashenafi Y, Teegala S, Khan AF, Alam N, Levine A | The American journal of tropical medicine and hygiene | 29761756 | Am J Trop Med Hyg | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29761756 |
| An ethnographic exploration of diarrheal disease management in public hospitals in Bangladesh: From problems to solutions. | Biswas D, Hossin R, Rahman M, Bardosh KL, Watt MH, Zion MI, Sujon H, Rashid MM, Salimuzzaman M, Flora MS, Qadri F, Khan AI, Nelson EJ | Social science & medicine (1982) | 32712557 | Soc Sci Med | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32712557 |
| Recipient priming to one RBC alloantigen directly enhances subsequent alloimmunization in mice. | Patel SR, Bennett A, Girard-Pierce K, Maier CL, Chonat S, Arthur CM, Zerra PE, Mener A, Stowell SR | Blood advances | 29365318 | Blood Adv | 2018 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/29365318 |
| Antibody-mediated immunosuppression can result from RBC antigen loss independent of Fcγ receptors in mice. | Mener A, Patel SR, Arthur CM, Stowell SR | Transfusion | 30474857 | Transfusion | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30474857 |
| The Sweet-Side of Leukocytes: Galectins as Master Regulators of Neutrophil Function. | Robinson BS, Arthur CM, Evavold B, Roback E, Kamili NA, Stowell CS, Vallecillo-Zúniga ML, Van Ry PM, Dias-Baruffi M, Cummings RD, Stowell SR | Frontiers in immunology | 31440233 | Front Immunol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31440233 |
| Complement Component 3 Negatively Regulates Antibody Response by Modulation of Red Blood Cell Antigen. | Mener A, Arthur CM, Patel SR, Liu J, Hendrickson JE, Stowell SR | Frontiers in immunology | 29942300 | Front Immunol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29942300 |
| Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk. | Kudelka MR, Hinrichs BH, Darby T, Moreno CS, Nishio H, Cutler CE, Wang J, Wu H, Zeng J, Wang Y, Ju T, Stowell SR, Nusrat A, Jones RM, Neish AS, Cummings RD | Proceedings of the National Academy of Sciences of the United States of America | 27930307 | Proc Natl Acad Sci U S A | 2016 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/27930307 |
| CD8+ T cells mediate antibody-independent platelet clearance in mice. | Arthur CM, Patel SR, Sullivan HC, Winkler AM, Tormey CA, Hendrickson JE, Stowell SR | Blood | 26787734 | Blood | 2016 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/26787734 |
| Innate immunity against molecular mimicry: Examining galectin-mediated antimicrobial activity. | Arthur CM, Patel SR, Mener A, Kamili NA, Fasano RM, Meyer E, Winkler AM, Sola-Visner M, Josephson CD, Stowell SR | BioEssays : news and reviews in molecular, cellular and developmental biology | 26577077 | Bioessays | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26577077 |
| The role of galectins in immunity and infection. | Liu FT, Stowell SR | Nature reviews. Immunology | 36646848 | Nat Rev Immunol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36646848 |
| A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface. | Wu H, Shajahan A, Yang JY, Capota E, Wands AM, Arthur CM, Stowell SR, Moremen KW, Azadi P, Kohler JJ | Cell chemical biology | 34331854 | Cell Chem Biol | 2022 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/34331854 |
| Protein glycosylation in cancer. | Stowell SR, Ju T, Cummings RD | Annual review of pathology | 25621663 | Annu Rev Pathol | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25621663 |
| Key regulators of galectin-glycan interactions. | Kamili NA, Arthur CM, Gerner-Smidt C, Tafesse E, Blenda A, Dias-Baruffi M, Stowell SR | Proteomics | 27582340 | Proteomics | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27582340 |
| Examining the Role of Complement in Predicting, Preventing, and Treating Hemolytic Transfusion Reactions. | Arthur CM, Chonat S, Fasano R, Yee MEM, Josephson CD, Roback JD, Stowell SR | Transfusion medicine reviews | 31679762 | Transfus Med Rev | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31679762 |
| Full-Length Galectin-3 Is Required for High Affinity Microbial Interactions and Antimicrobial Activity. | Wu SC, Ho AD, Kamili NA, Wang J, Murdock KL, Cummings RD, Arthur CM, Stowell SR | Frontiers in microbiology | 34690972 | Front Microbiol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34690972 |
| Anemia induces gut inflammation and injury in an animal model of preterm infants. | Arthur CM, Nalbant D, Feldman HA, Saeedi BJ, Matthews J, Robinson BS, Kamili NA, Bennett A, Cress GA, Sola-Visner M, Jones RM, Zimmerman MB, Neish AS, Patel RM, Nopoulos P, Georgieff MK, Roback JD, Widness JA, Josephson CD, Stowell SR | Transfusion | 30897226 | Transfusion | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30897226 |
| Antibody-mediated immune suppression by antigen modulation is antigen-specific. | Maier CL, Mener A, Patel SR, Jajosky RP, Bennett AL, Arthur CM, Hendrickson JE, Stowell SR | Blood advances | 30413434 | Blood Adv | 2018 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/30413434 |
| Nonhuman glycans can regulate anti-factor VIII antibody formation in mice. | Arthur CM, Zerra PE, Shin S, Wang J, Song X, Doering CB, Lollar P, Meeks S, Stowell SR | Blood | 34019619 | Blood | 2022 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/34019619 |
| Innate immune Galectin-7 specifically targets microbes that decorate themselves in blood group-like antigens. | Wu SC, Kamili NA, Dias-Baruffi M, Josephson CD, Rathgeber MF, Yeung MY, Lane WJ, Wang J, Jan HM, Rakoff-Nahoum S, Cummings RD, Stowell SR, Arthur CM | iScience | 35754739 | iScience | 2022 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/35754739 |
| Intestinal epithelial glycosylation in homeostasis and gut microbiota interactions in IBD. | Kudelka MR, Stowell SR, Cummings RD, Neish AS | Nature reviews. Gastroenterology & hepatology | 32710014 | Nat Rev Gastroenterol Hepatol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32710014 |
| Fc Gamma Receptors and Complement Component 3 Facilitate Anti-fVIII Antibody Formation. | Zerra PE, Arthur CM, Chonat S, Maier CL, Mener A, Shin S, Allen JWL, Baldwin WH, Cox C, Verkerke H, Jajosky RP, Tormey CA, Meeks SL, Stowell SR | Frontiers in immunology | 32582142 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32582142 |
| Daratumumab (anti-CD38) induces loss of CD38 on red blood cells. | Sullivan HC, Gerner-Smidt C, Nooka AK, Arthur CM, Thompson L, Mener A, Patel SR, Yee M, Fasano RM, Josephson CD, Kaufman RM, Roback JD, Lonial S, Stowell SR | Blood | 28373263 | Blood | 2017 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/28373263 |
| Antigen Density Dictates Immune Responsiveness following Red Blood Cell Transfusion. | Arthur CM, Patel SR, Smith NH, Bennett A, Kamili NA, Mener A, Gerner-Smidt C, Sullivan HC, Hale JS, Wieland A, Youngblood B, Zimring JC, Hendrickson JE, Stowell SR | Journal of immunology (Baltimore, Md. : 1950) | 28250159 | J Immunol | 2017 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/28250159 |
| Complement serves as a switch between CD4+ T cell-independent and -dependent RBC antibody responses. | Mener A, Patel SR, Arthur CM, Chonat S, Wieland A, Santhanakrishnan M, Liu J, Maier CL, Jajosky RP, Girard-Pierce K, Bennett A, Zerra PE, Smith NH, Hendrickson JE, Stowell SR | JCI insight | 30429364 | JCI Insight | 2018 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/30429364 |
| Marginal Zone B Cells Induce Alloantibody Formation Following RBC Transfusion. | Patel SR, Gibb DR, Girard-Pierce K, Zhou X, Rodrigues LC, Arthur CM, Bennett AL, Jajosky RP, Fuller M, Maier CL, Zerra PE, Chonat S, Smith NH, Tormey CA, Hendrickson JE, Stowell SR | Frontiers in immunology | 30505302 | Front Immunol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30505302 |
| Galectin-9 recognizes and exhibits antimicrobial activity toward microbes expressing blood group-like antigens. | Blenda AV, Kamili NA, Wu SC, Abel WF, Ayona D, Gerner-Smidt C, Ho AD, Benian GM, Cummings RD, Arthur CM, Stowell SR | The Journal of biological chemistry | 35148986 | J Biol Chem | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35148986 |
| Galectin-9 Is a Novel Regulator of Epithelial Restitution. | Robinson BS, Saeedi B, Arthur CM, Owens J, Naudin C, Ahmed N, Luo L, Jones R, Neish A, Stowell SR | The American journal of pathology | 32380082 | Am J Pathol | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/32380082 |
| Targeting altered glycosylation in secreted tumor glycoproteins for broad cancer detection. | Kudelka MR, Gu W, Matsumoto Y, Ju T, Barnes Ii RH, Kardish RJ, Heimburg-Molinaro J, Lehoux S, Zeng J, Cohen C, Robinson BS, Shah KS, Chaikof EL, Stowell SR, Cummings RD | Glycobiology | 37216646 | Glycobiology | 2023 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/37216646 |
| ABO blood group antigens and differential glycan expression: Perspective on the evolution of common human enzyme deficiencies. | Jajosky RP, Wu SC, Zheng L, Jajosky AN, Jajosky PG, Josephson CD, Hollenhorst MA, Sackstein R, Cummings RD, Arthur CM, Stowell SR | iScience | 36691627 | iScience | 2023 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/36691627 |
| Marginal zone B cells mediate a CD4 T-cell-dependent extrafollicular antibody response following RBC transfusion in mice. | Zerra PE, Patel SR, Jajosky RP, Arthur CM, McCoy JW, Allen JWL, Chonat S, Fasano RM, Roback JD, Josephson CD, Hendrickson JE, Stowell SR | Blood | 33876205 | Blood | 2021 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/33876205 |
| Generation and Use of Recombinant Galectins. | Wu SC, Paul A, Ho A, Patel KR, Allen JWL, Verkerke H, Arthur CM, Stowell SR | Current protocols | 33656274 | Curr Protoc | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33656274 |
| Suitability of lattice Boltzmann inlet and outlet boundary conditions for simulating flow in image-derived vasculature. | Feiger B, Vardhan M, Gounley J, Mortensen M, Nair P, Chaudhury R, Frakes D, Randles A | International journal for numerical methods in biomedical engineering | 30838793 | Int J Numer Method Biomed Eng | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30838793 |
| Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease. | Randles A, Frakes DH, Leopold JA | Trends in biotechnology | 28942268 | Trends Biotechnol | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28942268 |
| Numerical simulation of a compound capsule in a constricted microchannel. | Gounley J, Draeger EW, Randles A | Procedia computer science | 28831291 | Procedia Comput Sci | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28831291 |
| Hemodynamic and morphological characteristics of a growing cerebral aneurysm. | Dabagh M, Nair P, Gounley J, Frakes D, Gonzalez LF, Randles A | Neurosurgical focus | 31261117 | Neurosurg Focus | 2019 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/31261117 |
| Localization of Rolling and Firm-Adhesive Interactions Between Circulating Tumor Cells and the Microvasculature Wall. | Dabagh M, Gounley J, Randles A | Cellular and molecular bioengineering | 32175027 | Cell Mol Bioeng | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32175027 |
| Computational modelling of perivascular-niche dynamics for the optimization of treatment schedules for glioblastoma. | Randles A, Wirsching HG, Dean JA, Cheng YK, Emerson S, Pattwell SS, Holland EC, Michor F | Nature biomedical engineering | 33864039 | Nat Biomed Eng | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33864039 |
| Rapid Ventilator Splitting During COVID-19 Pandemic Using 3D Printed Devices and Numerical Modeling of 200 Million Patient Specific Air Flow Scenarios. | Bishawi M, Kaplan M, Chidyagwai S, Cappiello J, Cherry A, MacLeod D, Gall K, Evans N, Kim M, Shaha R, Whittle J, Hollidge M, Truskey G, Randles A | Research square | 32818206 | Res Sq | 2020 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/32818206 |
| Modeling the effect of patient size on cerebral perfusion during veno-arterial extracorporeal membrane oxygenation. | Feiger B, Jensen CW, Bryner BS, Segars WP, Randles A | Perfusion | 37395266 | Perfusion | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37395266 |
| Multi-GPU Immersed Boundary Method Hemodynamics Simulations. | Ames J, Puleri DF, Balogh P, Gounley J, Draeger EW, Randles A | Journal of computational science | 32754287 | J Comput Sci | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32754287 |
| Investigating the Interaction Between Circulating Tumor Cells and Local Hydrodynamics via Experiment and Simulations. | Pepona M, Balogh P, Puleri DF, Hynes WF, Robertson C, Dubbin K, Alvarado J, Moya ML, Randles A | Cellular and molecular bioengineering | 33184581 | Cell Mol Bioeng | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33184581 |
| Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature. | Randles A, Draeger EW, Bailey PE | Journal of computational science | 29152011 | J Comput Sci | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29152011 |
| A Framework for Comparing Vascular Hemodynamics at Different Points in Time. | Gounley J, Vardhan M, Randles A | Computer physics communications | 30504967 | Comput Phys Commun | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30504967 |
| Non-invasive characterization of complex coronary lesions. | Vardhan M, Gounley J, Chen SJ, Chi EC, Kahn AM, Leopold JA, Randles A | Scientific reports | 33854076 | Sci Rep | 2021 Apr 14 | https://www.ncbi.nlm.nih.gov/pubmed/33854076 |
| Characterization of hemodynamics in anomalous aortic origin of coronary arteries using patient-specific modeling. | Chidyagwai SG, Vardhan M, Kaplan M, Chamberlain R, Barker P, Randles A | Journal of biomechanics | 35063831 | J Biomech | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35063831 |
| The role of adhesive receptor patterns on cell transport in complex microvessels. | Puleri DF, Randles A | Biomechanics and modeling in mechanobiology | 35507242 | Biomech Model Mechanobiol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35507242 |
| Computational Framework to Evaluate the Hydrodynamics of Cell Scaffold Geometries. | Puleri DF, Roychowdhury S, Ames J, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 33018467 | Annu Int Conf IEEE Eng Med Biol Soc | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33018467 |
| Multiscale modeling of blood flow to assess neurological complications in patients supported by venoarterial extracorporeal membrane oxygenation. | Feiger B, Adebiyi A, Randles A | Computers in biology and medicine | 33333365 | Comput Biol Med | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33333365 |
| Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity? | Gounley J, Chaudhury R, Vardhan M, Driscoll M, Pathangey G, Winarta K, Ryan J, Frakes D, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 28269039 | Annu Int Conf IEEE Eng Med Biol Soc | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28269039 |
| Computing the ankle-brachial index with parallel computational fluid dynamics. | Gounley J, Draeger EW, Oppelstrup T, Krauss WD, Gunnels JA, Chaudhury R, Nair P, Frakes D, Leopold JA, Randles A | Journal of biomechanics | 30385003 | J Biomech | 2019 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/30385003 |
| Accelerating massively parallel hemodynamic models of coarctation of the aorta using neural networks. | Feiger B, Gounley J, Adler D, Leopold JA, Draeger EW, Chaudhury R, Ryan J, Pathangey G, Winarta K, Frakes D, Michor F, Randles A | Scientific reports | 32528104 | Sci Rep | 2020 Jun 11 | https://www.ncbi.nlm.nih.gov/pubmed/32528104 |
| Determining the impacts of venoarterial extracorporeal membrane oxygenation on cerebral oxygenation using a one-dimensional blood flow simulator. | Feiger B, Kochar A, Gounley J, Bonadonna D, Daneshmand M, Randles A | Journal of biomechanics | 32220425 | J Biomech | 2020 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/32220425 |
| Propagation pattern for moment representation of the lattice Boltzmann method. | Gounley J, Vardhan M, Draeger EW, Valero-Lara P, Moore SV, Randles A | IEEE transactions on parallel and distributed systems : a publication of the IEEE Computer Society | 35498162 | IEEE Trans Parallel Distrib Syst | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35498162 |
| Multivascular networks and functional intravascular topologies within biocompatible hydrogels. | Grigoryan B, Paulsen SJ, Corbett DC, Sazer DW, Fortin CL, Zaita AJ, Greenfield PT, Calafat NJ, Gounley JP, Ta AH, Johansson F, Randles A, Rosenkrantz JE, Louis-Rosenberg JD, Galie PA, Stevens KR, Miller JS | Science (New York, N.Y.) | 31048486 | Science | 2019 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/31048486 |
| Surgical Modulation of Pulmonary Artery Shear Stress: A Patient-Specific CFD Analysis of the Norwood Procedure. | Chidyagwai SG, Kaplan MS, Jensen CW, Chen JS, Chamberlain RC, Hill KD, Barker PCA, Slesnick TC, Randles A | Cardiovascular engineering and technology | 38459240 | Cardiovasc Eng Technol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38459240 |
| An upper bound for the half-removal time of neutrophils from circulation. | Craig M, Humphries AR, Mackey MC | Blood | 27578816 | Blood | 2016 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/27578816 |
| Insufficient Evidence for Rare Activation of Latent HIV in the Absence of Reservoir-Reducing Interventions. | Hill AL, Rosenbloom DI, Siliciano JD, Siliciano RF | PLoS pathogens | 27560936 | PLoS Pathog | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/27560936 |
| Real-Time Predictions of Reservoir Size and Rebound Time during Antiretroviral Therapy Interruption Trials for HIV. | Hill AL, Rosenbloom DI, Goldstein E, Hanhauser E, Kuritzkes DR, Siliciano RF, Henrich TJ | PLoS pathogens | 27119536 | PLoS Pathog | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/27119536 |
| Chaos synchronization and Nelder-Mead search for parameter estimation in nonlinear pharmacological systems: Estimating tumor antigenicity in a model of immunotherapy. | Pillai N, Craig M, Dokoumetzidis A, Schwartz SL, Bies R, Freedman I | Progress in biophysics and molecular biology | 29928905 | Prog Biophys Mol Biol | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/29928905 |
| Insight into treatment of HIV infection from viral dynamics models. | Hill AL, Rosenbloom DIS, Nowak MA, Siliciano RF | Immunological reviews | 30129208 | Immunol Rev | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30129208 |
| Mathematical Models of HIV Latency. | Hill AL | Current topics in microbiology and immunology | 29164341 | Curr Top Microbiol Immunol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29164341 |
| Antigen-driven clonal selection shapes the persistence of HIV-1-infected CD4+ T cells in vivo. | Simonetti FR, Zhang H, Soroosh GP, Duan J, Rhodehouse K, Hill AL, Beg SA, McCormick K, Raymond HE, Nobles CL, Everett JK, Kwon KJ, White JA, Lai J, Margolick JB, Hoh R, Deeks SG, Bushman FD, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 33301425 | J Clin Invest | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/33301425 |
| Re-evaluating evolution in the HIV reservoir. | Rosenbloom DIS, Hill AL, Laskey SB, Siliciano RF | Nature | 29168805 | Nature | 2017 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/29168805 |
| Development of an oral once-weekly drug delivery system for HIV antiretroviral therapy. | Kirtane AR, Abouzid O, Minahan D, Bensel T, Hill AL, Selinger C, Bershteyn A, Craig M, Mo SS, Mazdiyasni H, Cleveland C, Rogner J, Lee YL, Booth L, Javid F, Wu SJ, Grant T, Bellinger AM, Nikolic B, Hayward A, Wood L, Eckhoff PA, Nowak MA, Langer R, Traverso G | Nature communications | 29317618 | Nat Commun | 2018 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/29317618 |
| Expanded cellular clones carrying replication-competent HIV-1 persist, wax, and wane. | Wang Z, Gurule EE, Brennan TP, Gerold JM, Kwon KJ, Hosmane NN, Kumar MR, Beg SA, Capoferri AA, Ray SC, Ho YC, Hill AL, Siliciano JD, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 29483265 | Proc Natl Acad Sci U S A | 2018 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/29483265 |
| Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance. | Moreno-Gamez S, Hill AL, Rosenbloom DI, Petrov DA, Nowak MA, Pennings PS | Proceedings of the National Academy of Sciences of the United States of America | 26038564 | Proc Natl Acad Sci U S A | 2015 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/26038564 |
| A Blueprint for Identifying Phenotypes and Drug Targets in Complex Disorders with Empirical Dynamics. | Krieger MS, Moreau JM, Zhang H, Chien M, Zehnder JL, Craig M | Patterns (New York, N.Y.) | 33336196 | Patterns (N Y) | 2020 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/33336196 |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 36523404 | medRxiv | 2022 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/36523404 |
| A Systematic Review of Coronavirus Disease 2019 Vaccine Efficacy and Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Disease. | Higdon MM, Wahl B, Jones CB, Rosen JG, Truelove SA, Baidya A, Nande AA, ShamaeiZadeh PA, Walter KK, Feikin DR, Patel MK, Deloria Knoll M, Hill AL | Open forum infectious diseases | 35611346 | Open Forum Infect Dis | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35611346 |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | PLoS computational biology | 33534808 | PLoS Comput Biol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33534808 |
| Vaccine failure mode determines population-level impact of vaccination campaigns during epidemics. | Lee DI, Nande A, Anderson TL, Levy MZ, Hill AL | Journal of the Royal Society, Interface | 39965640 | J R Soc Interface | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39965640 |
| Designing and Interpreting Limiting Dilution Assays: General Principles and Applications to the Latent Reservoir for Human Immunodeficiency Virus-1. | Rosenbloom DI, Elliott O, Hill AL, Henrich TJ, Siliciano JM, Siliciano RF | Open forum infectious diseases | 26478893 | Open Forum Infect Dis | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26478893 |
| Evolution and emergence of infectious diseases in theoretical and real-world networks. | Leventhal GE, Hill AL, Nowak MA, Bonhoeffer S | Nature communications | 25592476 | Nat Commun | 2015 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/25592476 |
| Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1. | Hill AL, Rosenbloom DI, Fu F, Nowak MA, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 25097264 | Proc Natl Acad Sci U S A | 2014 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/25097264 |
| Life cycle synchronization is a viral drug resistance mechanism. | Neagu IA, Olejarz J, Freeman M, Rosenbloom DIS, Nowak MA, Hill AL | PLoS computational biology | 29447150 | PLoS Comput Biol | 2018 Feb | https://www.ncbi.nlm.nih.gov/pubmed/29447150 |
| TLR7 agonists induce transient viremia and reduce the viral reservoir in SIV-infected rhesus macaques on antiretroviral therapy. | Lim SY, Osuna CE, Hraber PT, Hesselgesser J, Gerold JM, Barnes TL, Sanisetty S, Seaman MS, Lewis MG, Geleziunas R, Miller MD, Cihlar T, Lee WA, Hill AL, Whitney JB | Science translational medicine | 29720451 | Sci Transl Med | 2018 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/29720451 |
| Towards Quantitative Systems Pharmacology Models of Chemotherapy-Induced Neutropenia. | Craig M | CPT: pharmacometrics & systems pharmacology | 28418603 | CPT Pharmacometrics Syst Pharmacol | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28418603 |
| Ex vivo analysis identifies effective HIV-1 latency-reversing drug combinations. | Laird GM, Bullen CK, Rosenbloom DI, Martin AR, Hill AL, Durand CM, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 25822022 | J Clin Invest | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25822022 |
| Ad26/MVA therapeutic vaccination with TLR7 stimulation in SIV-infected rhesus monkeys. | Borducchi EN, Cabral C, Stephenson KE, Liu J, Abbink P, Ng'ang'a D, Nkolola JP, Brinkman AL, Peter L, Lee BC, Jimenez J, Jetton D, Mondesir J, Mojta S, Chandrashekar A, Molloy K, Alter G, Gerold JM, Hill AL, Lewis MG, Pau MG, Schuitemaker H, Hesselgesser J, Geleziunas R, Kim JH, Robb ML, Michael NL, Barouch DH | Nature | 27841870 | Nature | 2016 Dec 8 | https://www.ncbi.nlm.nih.gov/pubmed/27841870 |
| Modeling HIV persistence and cure studies. | Hill AL | Current opinion in HIV and AIDS | 29916846 | Curr Opin HIV AIDS | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29916846 |
| Dynamics of bed bug infestations and control under disclosure policies. | Xie S, Hill AL, Rehmann CR, Levy MZ | Proceedings of the National Academy of Sciences of the United States of America | 30833386 | Proc Natl Acad Sci U S A | 2019 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/30833386 |
| Cooperative adaptation to therapy (CAT) confers resistance in heterogeneous non-small cell lung cancer. | Craig M, Kaveh K, Woosley A, Brown AS, Goldman D, Eton E, Mehta RM, Dhawan A, Arai K, Rahman MM, Chen S, Nowak MA, Goldman A | PLoS computational biology | 31449515 | PLoS Comput Biol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31449515 |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 32577691 | medRxiv | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/32577691 |
| Population structure across scales facilitates coexistence and spatial heterogeneity of antibiotic-resistant infections. | Krieger MS, Denison CE, Anderson TL, Nowak MA, Hill AL | PLoS computational biology | 32628660 | PLoS Comput Biol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32628660 |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe A, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 33140067 | medRxiv | 2021 Jan 19 | https://www.ncbi.nlm.nih.gov/pubmed/33140067 |
| Crowding and the shape of COVID-19 epidemics. | Rader B, Scarpino SV, Nande A, Hill AL, Adlam B, Reiner RC, Pigott DM, Gutierrez B, Zarebski AE, Shrestha M, Brownstein JS, Castro MC, Dye C, Tian H, Pybus OG, Kraemer MUG | Nature medicine | 33020651 | Nat Med | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33020651 |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe AH, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | Nature communications | 33859196 | Nat Commun | 2021 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/33859196 |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | Epidemics | 37556994 | Epidemics | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37556994 |
| Relationships between Changes in Urban Characteristics and Air Quality in East Asia from 2000 to 2010. | Larkin A, van Donkelaar A, Geddes JA, Martin RV, Hystad P | Environmental science & technology | 27442110 | Environ Sci Technol | 2016 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/27442110 |
| Towards Personal Exposures: How Technology Is Changing Air Pollution and Health Research. | Larkin A, Hystad P | Current environmental health reports | 28983874 | Curr Environ Health Rep | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28983874 |
| Global Land Use Regression Model for Nitrogen Dioxide Air Pollution. | Larkin A, Geddes JA, Martin RV, Xiao Q, Liu Y, Marshall JD, Brauer M, Hystad P | Environmental science & technology | 28520422 | Environ Sci Technol | 2017 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/28520422 |
| Health Effects of Household Solid Fuel Use: Findings from 11 Countries within the Prospective Urban and Rural Epidemiology Study. | Hystad P, Duong M, Brauer M, Larkin A, Arku R, Kurmi OP, Fan WQ, Avezum A, Azam I, Chifamba J, Dans A, du Plessis JL, Gupta R, Kumar R, Lanas F, Liu Z, Lu Y, Lopez-Jaramillo P, Mony P, Mohan V, Mohan D, Nair S, Puoane T, Rahman O, Lap AT, Wang Y, Wei L, Yeates K, Rangarajan S, Teo K, Yusuf S, [on behalf of Prospective Urban and Rural Epidemiological (PURE) Study investigators] | Environmental health perspectives | 31067132 | Environ Health Perspect | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/31067132 |
| Long-term exposure to outdoor and household air pollution and blood pressure in the Prospective Urban and Rural Epidemiological (PURE) study. | Arku RE, Brauer M, Ahmed SH, AlHabib KF, Avezum Á, Bo J, Choudhury T, Dans AM, Gupta R, Iqbal R, Ismail N, Kelishadi R, Khatib R, Koon T, Kumar R, Lanas F, Lear SA, Wei L, Lopez-Jaramillo P, Mohan V, Poirier P, Puoane T, Rangarajan S, Rosengren A, Soman B, Caklili OT, Yang S, Yeates K, Yin L, Yusoff K, Zatoński T, Yusuf S, Hystad P | Environmental pollution (Barking, Essex : 1987) | 32146361 | Environ Pollut | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32146361 |
| Household Air Pollution and Adult Lung Function Change, Respiratory Disease, and Mortality across Eleven Low- and Middle-Income Countries from the PURE Study. | Wang Y, Duong M, Brauer M, Rangarajan S, Dans A, Lanas F, Lopez-Jaramillo P, Puoane T, Yeates K, Chifamba J, Yusuf R, Liu Z, Li Y, Tse LA, Mohan D, Gupta R, Nair S, Lakshmi P, Iqbal R, Anto T, Yusuf S, Hystad P | Environmental health perspectives | 37126654 | Environ Health Perspect | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37126654 |
| Adverse health impacts of cooking with kerosene: A multi-country analysis within the Prospective Urban and Rural Epidemiology Study. | Arku RE, Brauer M, Duong M, Wei L, Hu B, Ah Tse L, Mony PK, Lakshmi PVM, Pillai RK, Mohan V, Yeates K, Kruger L, Rangarajan S, Koon T, Yusuf S, Hystad P, PURE (Prospective Urban and Rural Epidemiological) Study investigators | Environmental research | 32798956 | Environ Res | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32798956 |
| Air pollution health impacts: the knowns and unknowns for reliable global burden calculations. | Hystad P, Yusuf S, Brauer M | Cardiovascular research | 32267925 | Cardiovasc Res | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32267925 |
| Personal and household PM(2.5) and black carbon exposure measures and respiratory symptoms in 8 low- and middle-income countries. | Wang Y, Shupler M, Birch A, Chu YL, Jeronimo M, Rangarajan S, Mustaha M, Heenan L, Seron P, Saavedra N, Oliveros MJ, Lopez-Jaramillo P, Camacho PA, Otero J, Perez-Mayorga M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Liu Z, Cheng X, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, Hystad P, PURE-AIR study investigators | Environmental research | 35526584 | Environ Res | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35526584 |
| Household, Community, Sub-National and Country-level Predictors of Primary Cooking Fuel Switching in Nine Countries from the PURE Study. | Shupler M, Hystad P, Gustafson P, Rangarajan S, Mushtaha M, Jayachtria KG, Mony PK, Mohan D, Kumar P, Lakshmi P, Sagar V, Gupta R, Mohan I, Nair S, Varma RP, Li W, Hu B, You K, Ncube T, Ncube B, Chifamba J, West N, Yeates K, Iqbal R, Khawaja R, Yusuf R, Khan A, Seron P, Lanas F, Lopez-Jaramillo P, Camacho PA, Puoane T, Yusuf S, Brauer M | Environmental research letters : ERL [Web site] | 33777170 | Environ Res Lett | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33777170 |
| Multinational prediction of household and personal exposure to fine particulate matter (PM(2.5)) in the PURE cohort study. | Shupler M, Hystad P, Birch A, Chu YL, Jeronimo M, Miller-Lionberg D, Gustafson P, Rangarajan S, Mustaha M, Heenan L, Seron P, Lanas F, Cazor F, Jose Oliveros M, Lopez-Jaramillo P, Camacho PA, Otero J, Perez M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Liu Z, Wu S, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, PURE-AIR study investigators | Environment international | 34915352 | Environ Int | 2022 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/34915352 |
| Modifiable risk factors, cardiovascular disease, and mortality in 155 722 individuals from 21 high-income, middle-income, and low-income countries (PURE): a prospective cohort study. | Yusuf S, Joseph P, Rangarajan S, Islam S, Mente A, Hystad P, Brauer M, Kutty VR, Gupta R, Wielgosz A, AlHabib KF, Dans A, Lopez-Jaramillo P, Avezum A, Lanas F, Oguz A, Kruger IM, Diaz R, Yusoff K, Mony P, Chifamba J, Yeates K, Kelishadi R, Yusufali A, Khatib R, Rahman O, Zatonska K, Iqbal R, Wei L, Bo H, Rosengren A, Kaur M, Mohan V, Lear SA, Teo KK, Leong D, O'Donnell M, McKee M, Dagenais G | Lancet (London, England) | 31492503 | Lancet | 2020 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/31492503 |
| Elevated blood pressure and household solid fuel use in premenopausal women: Analysis of 12 Demographic and Health Surveys (DHS) from 10 countries. | Arku RE, Ezzati M, Baumgartner J, Fink G, Zhou B, Hystad P, Brauer M | Environmental research | 29107891 | Environ Res | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29107891 |
| Interaction of Depression and Unhealthy Diets on the Risk of Cardiovascular Diseases and All-Cause Mortality in the Chinese Population: A PURE Cohort Substudy. | Lang X, Liu Z, Islam S, Han G, Rangarajan S, Tse LA, Mushtaha M, Wang J, Hu L, Qiang D, Zhu Y, Yusuf S, Lin Y, Hu B, On Behalf Of The Pure-China Investigators | Nutrients | 36501202 | Nutrients | 2022 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/36501202 |
| Associations of outdoor fine particulate air pollution and cardiovascular disease in 157 436 individuals from 21 high-income, middle-income, and low-income countries (PURE): a prospective cohort study. | Hystad P, Larkin A, Rangarajan S, AlHabib KF, Avezum Á, Calik KBT, Chifamba J, Dans A, Diaz R, du Plessis JL, Gupta R, Iqbal R, Khatib R, Kelishadi R, Lanas F, Liu Z, Lopez-Jaramillo P, Nair S, Poirier P, Rahman O, Rosengren A, Swidan H, Tse LA, Wei L, Wielgosz A, Yeates K, Yusoff K, Zatoński T, Burnett R, Yusuf S, Brauer M | The Lancet. Planetary health | 32559440 | Lancet Planet Health | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32559440 |
| Characterizing exposure to household air pollution within the Prospective Urban Rural Epidemiology (PURE) study. | Arku RE, Birch A, Shupler M, Yusuf S, Hystad P, Brauer M | Environment international | 29567495 | Environ Int | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/29567495 |
| Analysis of black carbon on filters by image-based reflectance. | Jeronimo M, Stewart Q, Weakley AT, Giacomo J, Zhang X, Hyslop N, Dillner AM, Shupler M, Brauer M | Atmospheric environment (Oxford, England : 1994) | 32095102 | Atmos Environ (1994) | 2020 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/32095102 |
| Workflow for Comparison of Chemical and Biological Metrics of Filter Collected PM(2.5). | Roper C, Perez A, Barrett D, Hystad P, Massey Simonich SL, Tanguay RL | Atmospheric environment (Oxford, England : 1994) | 32313426 | Atmos Environ (1994) | 2020 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/32313426 |
| Household and personal air pollution exposure measurements from 120 communities in eight countries: results from the PURE-AIR study. | Shupler M, Hystad P, Birch A, Miller-Lionberg D, Jeronimo M, Arku RE, Chu YL, Mushtaha M, Heenan L, Rangarajan S, Seron P, Lanas F, Cazor F, Lopez-Jaramillo P, Camacho PA, Perez M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Hu B, Liu X, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, PURE-AIR study | The Lancet. Planetary health | 33038319 | Lancet Planet Health | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33038319 |
| Urbanization and physical activity in the global Prospective Urban and Rural Epidemiology study. | Boakye K, Bovbjerg M, Schuna J Jr, Branscum A, Varma RP, Ismail R, Barbarash O, Dominguez J, Altuntas Y, Anjana RM, Yusuf R, Kelishadi R, Lopez-Jaramillo P, Iqbal R, Serón P, Rosengren A, Poirier P, Lakshmi PVM, Khatib R, Zatonska K, Hu B, Yin L, Wang C, Yeates K, Chifamba J, Alhabib KF, Avezum Á, Dans A, Lear SA, Yusuf S, Hystad P | Scientific reports | 36609613 | Sci Rep | 2023 Jan 6 | https://www.ncbi.nlm.nih.gov/pubmed/36609613 |
| Brain Imaging and Blood Biomarker Abnormalities in Children With Autosomal Dominant Alzheimer Disease: A Cross-Sectional Study. | Quiroz YT, Schultz AP, Chen K, Protas HD, Brickhouse M, Fleisher AS, Langbaum JB, Thiyyagura P, Fagan AM, Shah AR, Muniz M, Arboleda-Velasquez JF, Munoz C, Garcia G, Acosta-Baena N, Giraldo M, Tirado V, Ramírez DL, Tariot PN, Dickerson BC, Sperling RA, Lopera F, Reiman EM | JAMA neurology | 26121081 | JAMA Neurol | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26121081 |
| Successful Scene Encoding in Presymptomatic Early-Onset Alzheimer's Disease. | Quiroz YT, Willment KC, Castrillon G, Muniz M, Lopera F, Budson A, Stern CE | Journal of Alzheimer's disease : JAD | 26401774 | J Alzheimers Dis | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26401774 |
| Longitudinal Association of Depression Symptoms With Cognition and Cortical Amyloid Among Community-Dwelling Older Adults. | Gatchel JR, Rabin JS, Buckley RF, Locascio JJ, Quiroz YT, Yang HS, Vannini P, Amariglio RE, Rentz DM, Properzi M, Donovan NJ, Blacker D, Johnson KA, Sperling RA, Marshall GA, Harvard Aging Brain Study | JAMA network open | 31397865 | JAMA Netw Open | 2019 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/31397865 |
| Relationship between physical activity and biomarkers of pathology and neuroinflammation in preclinical autosomal-dominant Alzheimer's disease. | Guzmán-Vélez E, Rivera-Hernández A, Fabrega S, Oliveira G, Martínez JE, Baena A, Picard G, Lopera F, Arnold SE, Taylor JA, Quiroz YT | Alzheimer's & dementia (New York, N. Y.) | 39748841 | Alzheimers Dement (N Y) | 2024 Oct-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39748841 |
| Visual working memory for semantically related objects in healthy adults. | García-Magariño I, Fox-Fuller JT, Palacios-Navarro G, Baena A, Quiroz YT | Revista de neurologia | 33034365 | Rev Neurol | 2020 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/33034365 |
| Olfactory Function and Markers of Brain Pathology in Non-Demented Individuals with Autosomal Dominant Alzheimer's Disease. | Ramirez-Gomez L, Albers MW, Baena A, Vila-Castelar C, Fox-Fuller JT, Sanchez J, Jain F, Albers AD, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 35694921 | J Alzheimers Dis | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35694921 |
| Consideration of sex and gender in Alzheimer's disease and related disorders from a global perspective. | Mielke MM, Aggarwal NT, Vila-Castelar C, Agarwal P, Arenaza-Urquijo EM, Brett B, Brugulat-Serrat A, DuBose LE, Eikelboom WS, Flatt J, Foldi NS, Franzen S, Gilsanz P, Li W, McManus AJ, van Lent DM, Milani SA, Shaaban CE, Stites SD, Sundermann E, Suryadevara V, Trani JF, Turner AD, Vonk JMJ, Quiroz YT, Babulal GM, Diversity and Disparity Professional Interest Area Sex and Gender Special Interest Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35394117 | Alzheimers Dement | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35394117 |
| Neuroticism Is Associated with Tau Pathology in Cognitively Unimpaired Individuals with Autosomal Dominant Alzheimer's Disease. | Baena A, Bocanegra Y, Torres V, Vila-Castelar C, Guzmán-Vélez E, Fox-Fuller JT, Gatchel JR, Sánchez J, Pluim CF, Ramirez-Gómez L, Martínez J, Pineda D, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 34219716 | J Alzheimers Dis | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34219716 |
| The Latin American Spanish version of the Face-Name Associative Memory Exam is sensitive to cognitive and pathological changes in preclinical autosomal dominant Alzheimer's disease. | Vila-Castelar C, Muñoz N, Papp KV, Amariglio RE, Baena A, Guzmán-Vélez E, Bocanegra Y, Sanchez JS, Reiman EM, Johnson KA, Sperling RA, Lopera F, Rentz DM, Quiroz YT | Alzheimer's research & therapy | 32912283 | Alzheimers Res Ther | 2020 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/32912283 |
| Retinal Imaging Findings in Carriers With PSEN1-Associated Early-Onset Familial Alzheimer Disease Before Onset of Cognitive Symptoms. | Armstrong GW, Kim LA, Vingopoulos F, Park JY, Garg I, Kasetty M, Silverman RF, Zeng R, Douglas VP, Lopera F, Baena A, Giraldo M, Norton D, Cronin-Golomb A, Arboleda-Velasquez JF, Quiroz YT, Miller JB | JAMA ophthalmology | 33180114 | JAMA Ophthalmol | 2021 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/33180114 |
| The cortical origin and initial spread of medial temporal tauopathy in Alzheimer's disease assessed with positron emission tomography. | Sanchez JS, Becker JA, Jacobs HIL, Hanseeuw BJ, Jiang S, Schultz AP, Properzi MJ, Katz SR, Beiser A, Satizabal CL, O'Donnell A, DeCarli C, Killiany R, El Fakhri G, Normandin MD, Gómez-Isla T, Quiroz YT, Rentz DM, Sperling RA, Seshadri S, Augustinack J, Price JC, Johnson KA | Science translational medicine | 33472953 | Sci Transl Med | 2021 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/33472953 |
| Associations between plasma neurofilament light, in vivo brain pathology, and cognition in non-demented individuals with autosomal-dominant Alzheimer's disease. | Guzmán-Vélez E, Zetterberg H, Fox-Fuller JT, Vila-Castelar C, Sanchez JS, Baena A, Garcia-Ospina G, Aguillon D, Pardilla-Delgado E, Gatchel JR, Sperling RA, Johnson K, Reiman EM, Blennow K, Lopera F, Quiroz YT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 33527648 | Alzheimers Dement | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33527648 |
| Normative data stratified by age and education for a Spanish neuropsychological test battery: Results from the Colombian Alzheimer's prevention initiative registry. | Torres VL, Vila-Castelar C, Bocanegra Y, Baena A, Guzmán-Vélez E, Aguirre-Acevedo DC, Tirado V, Munoz C, Henao E, Moreno S, Giraldo M, Acosta N, Rios Romenets S, Langbaum JB, Cho W, Reiman EM, Tariot PN, Rosselli M, Quiroz YT, Lopera F | Applied neuropsychology. Adult | 31230490 | Appl Neuropsychol Adult | 2021 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/31230490 |
| Perspectives on ethnic and racial disparities in Alzheimer's disease and related dementias: Update and areas of immediate need. | Babulal GM, Quiroz YT, Albensi BC, Arenaza-Urquijo E, Astell AJ, Babiloni C, Bahar-Fuchs A, Bell J, Bowman GL, Brickman AM, Chételat G, Ciro C, Cohen AD, Dilworth-Anderson P, Dodge HH, Dreux S, Edland S, Esbensen A, Evered L, Ewers M, Fargo KN, Fortea J, Gonzalez H, Gustafson DR, Head E, Hendrix JA, Hofer SM, Johnson LA, Jutten R, Kilborn K, Lanctôt KL, Manly JJ, Martins RN, Mielke MM, Morris MC, Murray ME, Oh ES, Parra MA, Rissman RA, Roe CM, Santos OA, Scarmeas N, Schneider LS, Schupf N, Sikkes S, Snyder HM, Sohrabi HR, Stern Y, Strydom A, Tang Y, Terrera GM, Teunissen C, Melo van Lent D, Weinborn M, Wesselman L, Wilcock DM, Zetterberg H, O'Bryant SE, International Society to Advance Alzheimer's Research and Treatment, Alzheimer's Association | Alzheimer's & dementia : the journal of the Alzheimer's Association | 30555031 | Alzheimers Dement | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30555031 |
| Validation of the Latin American Spanish version of the face-name associative memory exam in a Colombian Sample. | Vila-Castelar C, Papp KV, Amariglio RE, Torres VL, Baena A, Gomez D, Rendon J, Samaroo A, Lopera F, Rentz DM, Quiroz YT | The Clinical neuropsychologist | 31851865 | Clin Neuropsychol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31851865 |
| Longitudinal amyloid and tau accumulation in autosomal dominant Alzheimer's disease: findings from the Colombia-Boston (COLBOS) biomarker study. | Sanchez JS, Hanseeuw BJ, Lopera F, Sperling RA, Baena A, Bocanegra Y, Aguillon D, Guzmán-Vélez E, Pardilla-Delgado E, Ramirez-Gomez L, Vila-Castelar C, Martinez JE, Fox-Fuller JT, Ramos C, Ochoa-Escudero M, Alvarez S, Jacobs HIL, Schultz AP, Gatchel JR, Becker JA, Katz SR, Mayblyum DV, Price JC, Reiman EM, Johnson KA, Quiroz YT | Alzheimer's research & therapy | 33451357 | Alzheimers Res Ther | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/33451357 |
| A public resource of baseline data from the Alzheimer's Prevention Initiative Autosomal-Dominant Alzheimer's Disease Trial. | Reiman EM, Pruzin JJ, Rios-Romenets S, Brown C, Giraldo M, Acosta-Baena N, Tobon C, Hu N, Chen Y, Ghisays V, Enos J, Goradia DD, Lee W, Luo J, Malek-Ahmadi M, Protas H, Thomas RG, Chen K, Su Y, Boker C, Mastroeni D, Alvarez S, Quiroz YT, Langbaum JB, Sink KM, Lopera F, Tariot PN, API ADAD Colombia Trial Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 36373344 | Alzheimers Dement | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36373344 |
| Sex differences in cognitive resilience in preclinical autosomal-dominant Alzheimer's disease carriers and non-carriers: Baseline findings from the API ADAD Colombia Trial. | Vila-Castelar C, Tariot PN, Sink KM, Clayton D, Langbaum JB, Thomas RG, Chen Y, Su Y, Chen K, Hu N, Giraldo-Chica M, Tobón C, Acosta-Baena N, Luna E, Londoño M, Ospina P, Tirado V, Muñoz C, Henao E, Bocanegra Y, Alvarez S, Rios-Romenets S, Ghisays V, Goradia D, Lee W, Luo J, Malek-Ahmadi MH, Protas HD, Lopera F, Reiman EM, Quiroz YT, API ADAD Colombia Trial Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35103388 | Alzheimers Dement | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35103388 |
| Global Cardiovascular Risk Profile and Cerebrovascular Abnormalities in Presymptomatic Individuals with CADASIL or Autosomal Dominant Alzheimer's Disease. | Schoemaker D, Velilla-Jimenez L, Zuluaga Y, Baena A, Ospina C, Bocanegra Y, Alvarez S, Ochoa-Escudero M, Guzmán-Vélez E, Martinez J, Lopera F, Arboleda-Velasquez JF, Quiroz YT | Journal of Alzheimer's disease : JAD | 34092645 | J Alzheimers Dis | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34092645 |
| Effect of apolipoprotein genotype and educational attainment on cognitive function in autosomal dominant Alzheimer's disease. | Langella S, Barksdale NG, Vasquez D, Aguillon D, Chen Y, Su Y, Acosta-Baena N, Acosta-Uribe J, Baena AY, Garcia-Ospina G, Giraldo-Chica M, Tirado V, Muñoz C, Ríos-Romenets S, Guzman-Martínez C, Oliveira G, Yang HS, Vila-Castelar C, Pruzin JJ, Ghisays V, Arboleda-Velasquez JF, Kosik KS, Reiman EM, Lopera F, Quiroz YT | Nature communications | 37612284 | Nat Commun | 2023 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/37612284 |
| Cognitive Decline in a Colombian Kindred With Autosomal Dominant Alzheimer Disease: A Retrospective Cohort Study. | Aguirre-Acevedo DC, Lopera F, Henao E, Tirado V, Muñoz C, Giraldo M, Bangdiwala SI, Reiman EM, Tariot PN, Langbaum JB, Quiroz YT, Jaimes F | JAMA neurology | 26902171 | JAMA Neurol | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/26902171 |
| Association Between Amyloid and Tau Accumulation in Young Adults With Autosomal Dominant Alzheimer Disease. | Quiroz YT, Sperling RA, Norton DJ, Baena A, Arboleda-Velasquez JF, Cosio D, Schultz A, Lapoint M, Guzman-Velez E, Miller JB, Kim LA, Chen K, Tariot PN, Lopera F, Reiman EM, Johnson KA | JAMA neurology | 29435558 | JAMA Neurol | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29435558 |
| Subjective memory complaints in preclinical autosomal dominant Alzheimer disease. | Norton DJ, Amariglio R, Protas H, Chen K, Aguirre-Acevedo DC, Pulsifer B, Castrillon G, Tirado V, Munoz C, Tariot P, Langbaum JB, Reiman EM, Lopera F, Sperling RA, Quiroz YT | Neurology | 28878053 | Neurology | 2017 Oct 3 | https://www.ncbi.nlm.nih.gov/pubmed/28878053 |
| Association of subjective cognitive decline with markers of brain pathology in preclinical autosomal dominant Alzheimer's disease. | Gatchel JR, Lopera F, Norton DJ, Baena A, Guzman-Velez E, Sanchez JS, d'Oleire Uquillas F, Schultz A, Vannini P, Artola A, Amariglio RE, Rentz DM, Tariot PN, Reiman EM, Johnson KA, Sperling RA, Marshall GA, Quiroz YT | Journal of neurology, neurosurgery, and psychiatry | 31874859 | J Neurol Neurosurg Psychiatry | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31874859 |
| Plasma neurofilament light chain in the presenilin 1 E280A autosomal dominant Alzheimer's disease kindred: a cross-sectional and longitudinal cohort study. | Quiroz YT, Zetterberg H, Reiman EM, Chen Y, Su Y, Fox-Fuller JT, Garcia G, Villegas A, Sepulveda-Falla D, Villada M, Arboleda-Velasquez JF, Guzmán-Vélez E, Vila-Castelar C, Gordon BA, Schultz SA, Protas HD, Ghisays V, Giraldo M, Tirado V, Baena A, Munoz C, Rios-Romenets S, Tariot PN, Blennow K, Lopera F | The Lancet. Neurology | 32470423 | Lancet Neurol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32470423 |
| Resistance to autosomal dominant Alzheimer's disease in an APOE3 Christchurch homozygote: a case report. | Arboleda-Velasquez JF, Lopera F, O'Hare M, Delgado-Tirado S, Marino C, Chmielewska N, Saez-Torres KL, Amarnani D, Schultz AP, Sperling RA, Leyton-Cifuentes D, Chen K, Baena A, Aguillon D, Rios-Romenets S, Giraldo M, Guzmán-Vélez E, Norton DJ, Pardilla-Delgado E, Artola A, Sanchez JS, Acosta-Uribe J, Lalli M, Kosik KS, Huentelman MJ, Zetterberg H, Blennow K, Reiman RA, Luo J, Chen Y, Thiyyagura P, Su Y, Jun GR, Naymik M, Gai X, Bootwalla M, Ji J, Shen L, Miller JB, Kim LA, Tariot PN, Johnson KA, Reiman EM, Quiroz YT | Nature medicine | 31686034 | Nat Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31686034 |
| Associative memory and in vivo brain pathology in asymptomatic presenilin-1 E280A carriers. | Guzmán-Vélez E, Martínez J, Papp K, Baena A, Vila-Castelar C, Artola A, Schultz AP, Bocanegra Y, Sanchez J, Rentz D, Tariot PN, Reiman EM, Sperling R, Johnson KA, Lopera F, Quiroz YT | Neurology | 32611637 | Neurology | 2020 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/32611637 |
| Resilience to autosomal dominant Alzheimer's disease in a Reelin-COLBOS heterozygous man. | Lopera F, Marino C, Chandrahas AS, O'Hare M, Villalba-Moreno ND, Aguillon D, Baena A, Sanchez JS, Vila-Castelar C, Ramirez Gomez L, Chmielewska N, Oliveira GM, Littau JL, Hartmann K, Park K, Krasemann S, Glatzel M, Schoemaker D, Gonzalez-Buendia L, Delgado-Tirado S, Arevalo-Alquichire S, Saez-Torres KL, Amarnani D, Kim LA, Mazzarino RC, Gordon H, Bocanegra Y, Villegas A, Gai X, Bootwalla M, Ji J, Shen L, Kosik KS, Su Y, Chen Y, Schultz A, Sperling RA, Johnson K, Reiman EM, Sepulveda-Falla D, Arboleda-Velasquez JF, Quiroz YT | Nature medicine | 37188781 | Nat Med | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37188781 |
| Cortical thickness across the lifespan in a Colombian cohort with autosomal-dominant Alzheimer's disease: A cross-sectional study. | Fox-Fuller JT, Torrico-Teave H, d'Oleire Uquillas F, Chen K, Su Y, Chen Y, Brickhouse M, Sanchez JS, Aguero C, Jacobs HIL, Hampton O, Guzmán-Vélez E, Vila-Castelar C, Aguirre-Acevedo DC, Baena A, Artola A, Martinez J, Pluim CF, Alvarez S, Ochoa-Escudero M, Reiman EM, Sperling RA, Lopera F, Johnson KA, Dickerson BC, Quiroz YT | Alzheimer's & dementia (Amsterdam, Netherlands) | 34541287 | Alzheimers Dement (Amst) | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34541287 |
| Genetic origin of a large family with a novel PSEN1 mutation (Ile416Thr). | Ramirez Aguilar L, Acosta-Uribe J, Giraldo MM, Moreno S, Baena A, Alzate D, Cuastumal R, Aguillón D, Madrigal L, Saldarriaga A, Navarro A, Garcia GP, Aguirre-Acevedo DC, Geier EG, Cochran JN, Quiroz YT, Myers RM, Yokoyama JS, Kosik KS, Lopera F | Alzheimer's & dementia : the journal of the Alzheimer's Association | 30745123 | Alzheimers Dement | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30745123 |
| PET evidence of preclinical cerebellar amyloid plaque deposition in autosomal dominant Alzheimer's disease-causing Presenilin-1 E280A mutation carriers. | Ghisays V, Lopera F, Goradia DD, Protas HD, Malek-Ahmadi MH, Chen Y, Devadas V, Luo J, Lee W, Baena A, Bocanegra Y, Guzmán-Vélez E, Pardilla-Delgado E, Vila-Castelar C, Fox-Fuller JT, Hu N, Clayton D, Thomas RG, Alvarez S, Espinosa A, Acosta-Baena N, Giraldo MM, Rios-Romenets S, Langbaum JB, Chen K, Su Y, Tariot PN, Quiroz YT, Reiman EM, API ADAD Colombia Trial Group | NeuroImage. Clinical | 34252876 | Neuroimage Clin | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34252876 |
| Subjective Cognitive Decline and its Relation to Verbal Memory and Sex in Cognitively Unimpaired Individuals from a Colombian Cohort with Autosomal-Dominant Alzheimer's Disease. | Martinez JE, Pardilla-Delgado E, Guzmán-Vélez E, Vila-Castelar C, Amariglio R, Gatchel J, Aguirre-Acevedo DC, Bocanegra Y, Baena A, Henao E, Tirado V, Muñoz C, Giraldo-Chica M, Lopera F, Quiroz YT | Journal of the International Neuropsychological Society : JINS | 34187609 | J Int Neuropsychol Soc | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34187609 |
| Waning locus coeruleus integrity precedes cortical tau accrual in preclinical autosomal dominant Alzheimer's disease. | Jacobs HIL, Becker JA, Kwong K, Munera D, Ramirez-Gomez L, Engels-Domínguez N, Sanchez JS, Vila-Castelar C, Baena A, Sperling RA, Johnson KA, Lopera F, Quiroz YT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35298083 | Alzheimers Dement | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35298083 |
| Examining Sex Differences in Markers of Cognition and Neurodegeneration in Autosomal Dominant Alzheimer's Disease: Preliminary Findings from the Colombian Alzheimer's Prevention Initiative Biomarker Study. | Vila-Castelar C, Guzmán-Vélez E, Pardilla-Delgado E, Buckley RF, Bocanegra Y, Baena A, Fox-Fuller JT, Tirado V, Muñoz C, Giraldo M, Acosta-Baena N, Rios-Romenets S, Langbaum JB, Tariot PN, Lopera F, Reiman EM, Quiroz YT | Journal of Alzheimer's disease : JAD | 32925067 | J Alzheimers Dis | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32925067 |
| A Three-Factor Structure of Cognitive Functioning Among Unimpaired Carriers and Non-Carriers of Autosomal-Dominant Alzheimer's Disease. | Guzmán-Vélez E, Jaimes S, Aguirre-Acevedo DC, Norton DJ, Papp KV, Amariglio R, Rentz D, Baena A, Henao E, Tirado V, Muñoz C, Giraldo M, Sperling RA, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 30040714 | J Alzheimers Dis | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30040714 |
| Biological and Cognitive Markers of Presenilin1 E280A Autosomal Dominant Alzheimer's Disease: A Comprehensive Review of the Colombian Kindred. | Fuller JT, Cronin-Golomb A, Gatchel JR, Norton DJ, Guzmán-Vélez E, Jacobs HIL, Hanseeuw B, Pardilla-Delgado E, Artola A, Baena A, Bocanegra Y, Kosik KS, Chen K, Tariot PN, Johnson K, Sperling RA, Reiman EM, Lopera F, Quiroz YT | The journal of prevention of Alzheimer's disease | 30756118 | J Prev Alzheimers Dis | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30756118 |
| Striatal amyloid is associated with tauopathy and memory decline in familial Alzheimer's disease. | Hanseeuw BJ, Lopera F, Sperling RA, Norton DJ, Guzman-Velez E, Baena A, Pardilla-Delgado E, Schultz AP, Gatchel J, Jin D, Chen K, Reiman EM, Johnson KA, Quiroz YT | Alzheimer's research & therapy | 30717814 | Alzheimers Res Ther | 2019 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/30717814 |
| Examining Cognitive Decline Across Black and White Participants in the Harvard Aging Brain Study. | Amariglio RE, Buckley RF, Rabin JS, Papp KV, Quiroz YT, Mormino EC, Sparks KP, Johnson KA, Rentz DM, Sperling RA | Journal of Alzheimer's disease : JAD | 32417775 | J Alzheimers Dis | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32417775 |
| Testing the amyloid cascade hypothesis: Prevention trials in autosomal dominant Alzheimer disease. | Levin J, Vöglein J, Quiroz YT, Bateman RJ, Ghisays V, Lopera F, McDade E, Reiman E, Tariot PN, Morris JC | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35212149 | Alzheimers Dement | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35212149 |
| Association Between Visual Memory and In Vivo Amyloid and Tau Pathology in Preclinical Autosomal Dominant Alzheimer's Disease. | Bocanegra Y, Fox-Fuller JT, Baena A, Guzmán-Vélez E, Vila-Castelar C, Martínez J, Torrico-Teave H, Lopera F, Quiroz YT | Journal of the International Neuropsychological Society : JINS | 32762790 | J Int Neuropsychol Soc | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32762790 |
| APOE3 Christchurch modulates β-catenin/Wnt signaling in iPS cell-derived cerebral organoids from Alzheimer's cases. | Perez-Corredor P, Vanderleest TE, Vacano GN, Sanchez JS, Villalba-Moreno ND, Marino C, Krasemann S, Mendivil-Perez MA, Aguillón D, Jiménez-Del-Río M, Baena A, Sepulveda-Falla D, Lopera F, Quiroz YT, Arboleda-Velasquez JF, Mazzarino RC | Frontiers in molecular neuroscience | 38571814 | Front Mol Neurosci | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38571814 |
| Memory for Semantically Related Objects Differentiates Cognitively Unimpaired Autosomal Dominant Mutation Carriers from Non-Carrier Family Members. | Fox-Fuller JT, Martinez JE, Baena A, Londono N, Munera D, Noriega D, Vila-Castelar C, Aduen PA, Lopera F, Cronin-Golomb A, Quiroz YT | The journal of prevention of Alzheimer's disease | 36946459 | J Prev Alzheimers Dis | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36946459 |
| Associations between subregional thalamic volume and brain pathology in autosomal dominant Alzheimer's disease. | Pardilla-Delgado E, Torrico-Teave H, Sanchez JS, Ramirez-Gomez LA, Baena A, Bocanegra Y, Vila-Castelar C, Fox-Fuller JT, Guzmán-Vélez E, Martínez J, Alvarez S, Ochoa-Escudero M, Lopera F, Quiroz YT | Brain communications | 34095834 | Brain Commun | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34095834 |
| APOE Christchurch-mimetic therapeutic antibody reduces APOE-mediated toxicity and tau phosphorylation. | Marino C, Perez-Corredor P, O'Hare M, Heuer A, Chmielewska N, Gordon H, Chandrahas AS, Gonzalez-Buendia L, Delgado-Tirado S, Doan TH, Vanderleest TE, Arevalo-Alquichire S, Obar RA, Ortiz-Cordero C, Villegas A, Sepulveda-Falla D, Kim LA, Lopera F, Mahley R, Huang Y, Quiroz YT, Arboleda-Velasquez JF | Alzheimer's & dementia : the journal of the Alzheimer's Association | 37791598 | Alzheimers Dement | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37791598 |
| MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure. | Keren L, Bosse M, Thompson S, Risom T, Vijayaragavan K, McCaffrey E, Marquez D, Angoshtari R, Greenwald NF, Fienberg H, Wang J, Kambham N, Kirkwood D, Nolan G, Montine TJ, Galli SJ, West R, Bendall SC, Angelo M | Science advances | 31633026 | Sci Adv | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31633026 |
| Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma. | Risom T, Glass DR, Averbukh I, Liu CC, Baranski A, Kagel A, McCaffrey EF, Greenwald NF, Rivero-Gutiérrez B, Strand SH, Varma S, Kong A, Keren L, Srivastava S, Zhu C, Khair Z, Veis DJ, Deschryver K, Vennam S, Maley C, Hwang ES, Marks JR, Bendall SC, Colditz GA, West RB, Angelo M | Cell | 35063072 | Cell | 2022 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/35063072 |
| A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging. | Keren L, Bosse M, Marquez D, Angoshtari R, Jain S, Varma S, Yang SR, Kurian A, Van Valen D, West R, Bendall SC, Angelo M | Cell | 30193111 | Cell | 2018 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/30193111 |
| MAUI (MBI Analysis User Interface)-An image processing pipeline for Multiplexed Mass Based Imaging. | Baranski A, Milo I, Greenbaum S, Oliveria JP, Mrdjen D, Angelo M, Keren L | PLoS computational biology | 33872301 | PLoS Comput Biol | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33872301 |
| Multiplexed imaging reveals an IFN-γ-driven inflammatory state in nivolumab-associated gastritis. | Ferrian S, Liu CC, McCaffrey EF, Kumar R, Nowicki TS, Dawson DW, Baranski A, Glaspy JA, Ribas A, Bendall SC, Angelo M | Cell reports. Medicine | 34755133 | Cell Rep Med | 2021 Oct 19 | https://www.ncbi.nlm.nih.gov/pubmed/34755133 |
| Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF). | Liu CC, Bosse M, Kong A, Kagel A, Kinders R, Hewitt SM, Varma S, van de Rijn M, Nowak SH, Bendall SC, Angelo M | Laboratory investigation; a journal of technical methods and pathology | 35351966 | Lab Invest | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35351966 |
| The automated computational workflow QUICHE reveals structural definitions of antitumor responses in triple-negative breast cancer. | Ranek JS, Greenwald NF, Goldston M, Camacho Fullaway C, Sowers C, Kong A, Mouron S, Quintela-Fandino M, West RB, Bendall SC, Angelo M | Nature cancer | 41708893 | Nat Cancer | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41708893 |
| Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning. | Greenwald NF, Miller G, Moen E, Kong A, Kagel A, Dougherty T, Fullaway CC, McIntosh BJ, Leow KX, Schwartz MS, Pavelchek C, Cui S, Camplisson I, Bar-Tal O, Singh J, Fong M, Chaudhry G, Abraham Z, Moseley J, Warshawsky S, Soon E, Greenbaum S, Risom T, Hollmann T, Bendall SC, Keren L, Graf W, Angelo M, Van Valen D | Nature biotechnology | 34795433 | Nat Biotechnol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34795433 |
| Multiplexed Ion Beam Imaging Readout of Single-Cell Immunoblotting. | Lomeli G, Bosse M, Bendall SC, Angelo M, Herr AE | Analytical chemistry | 34106685 | Anal Chem | 2021 Jun 22 | https://www.ncbi.nlm.nih.gov/pubmed/34106685 |
| Automated classification of cellular expression in multiplexed imaging data with Nimbus. | Rumberger JL, Greenwald NF, Ranek JS, Boonrat P, Walker C, Franzen J, Varra SR, Kong A, Sowers C, Liu CC, Averbukh I, Piyadasa H, Vanguri R, Nederlof I, Wang XJ, Van Valen D, Kok M, Bendall SC, Hollmann TJ, Kainmueller D, Angelo M | Nature methods | 41062826 | Nat Methods | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/41062826 |
| Rank Conditional Coverage and Confidence Intervals in High-Dimensional Problems. | Morrison J, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 30740009 | J Comput Graph Stat | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30740009 |
| Inference for multimarker adaptive enrichment trials. | Simon R, Simon N | Statistics in medicine | 28795420 | Stat Med | 2017 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/28795420 |
| Rejoinder to "Nonparametric variable importance assessment using machine learning techniques". | Williamson BD, Gilbert PB, Carone M, Simon N | Biometrics | 33290576 | Biometrics | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33290576 |
| A Flexible Framework for Nonparametric Graphical Modeling that Accommodates Machine Learning. | Xiang Y, Simon N | Proceedings of machine learning research | 33415321 | Proc Mach Learn Res | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33415321 |
| Simultaneous detection and estimation of trait associations with genomic phenotypes. | Morrison J, Simon N, Witten D | Biostatistics (Oxford, England) | 27496912 | Biostatistics | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27496912 |
| Convex Modeling of Interactions with Strong Heredity. | Haris A, Witten D, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 28316461 | J Comput Graph Stat | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28316461 |
| Nonparametric variable importance assessment using machine learning techniques. | Williamson BD, Gilbert PB, Carone M, Simon N | Biometrics | 33043428 | Biometrics | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33043428 |
| ESTIMATION OF CELL LINEAGE TREES BY MAXIMUM-LIKELIHOOD PHYLOGENETICS. | Feng J, Dewitt WS 3rd, McKenna A, Simon N, Willis AD, Matsen FA 4th | The annals of applied statistics | 35990087 | Ann Appl Stat | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35990087 |
| Fused Lasso Additive Model. | Petersen A, Witten D, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 28239246 | J Comput Graph Stat | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28239246 |
| Epigenetic memory via concordant DNA methylation is inversely correlated to developmental potential of mammalian cells. | Choi M, Genereux DP, Goodson J, Al-Azzawi H, Allain SQ, Simon N, Palasek S, Ware CB, Cavanaugh C, Miller DG, Johnson WC, Sinclair KD, Stöger R, Laird CD | PLoS genetics | 29107996 | PLoS Genet | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/29107996 |
| Learning to learn from data: Using deep adversarial learning to construct optimal statistical procedures. | Luedtke A, Carone M, Simon N, Sofrygin O | Science advances | 32166115 | Sci Adv | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32166115 |
| An online framework for survival analysis: reframing Cox proportional hazards model for large data sets and neural networks. | Tarkhan A, Simon N | Biostatistics (Oxford, England) | 36288541 | Biostatistics | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/36288541 |
| A framework for estimating and testing qualitative interactions with applications to predictive biomarkers. | Roth J, Simon N | Biostatistics (Oxford, England) | 28968765 | Biostatistics | 2018 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/28968765 |
| Using Bayesian modeling in frequentist adaptive enrichment designs. | Simon N, Simon R | Biostatistics (Oxford, England) | 28520893 | Biostatistics | 2018 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/28520893 |
| Convex Regression with Interpretable Sharp Partitions. | Petersen A, Simon N, Witten D | Journal of machine learning research : JMLR | 27635120 | J Mach Learn Res | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27635120 |
| Selective prediction-set models with coverage rate guarantees. | Feng J, Sondhi A, Perry J, Simon N | Biometrics | 34854476 | Biometrics | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34854476 |
| Approval policies for modifications to machine learning-based software as a medical device: A study of bio-creep. | Feng J, Emerson S, Simon N | Biometrics | 32981103 | Biometrics | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32981103 |
| Survival analysis of DNA mutation motifs with penalized proportional hazards. | Feng J, Shaw DA, Minin VN, Simon N, Matsen FA 4th | The annals of applied statistics | 33214798 | Ann Appl Stat | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33214798 |
| The AXL Receptor is a Sensor of Ligand Spatial Heterogeneity. | Meyer AS, Zweemer AJ, Lauffenburger DA | Cell systems | 26236777 | Cell Syst | 2015 Jul 29 | https://www.ncbi.nlm.nih.gov/pubmed/26236777 |
| Versatile targeting system for lentiviral vectors involving biotinylated targeting molecules. | Situ K, Chua BA, Bae SY, Meyer AS, Morizono K | Virology | 30290312 | Virology | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30290312 |
| A biomaterial screening approach reveals microenvironmental mechanisms of drug resistance. | Schwartz AD, Barney LE, Jansen LE, Nguyen TV, Hall CL, Meyer AS, Peyton SR | Integrative biology : quantitative biosciences from nano to macro | 29159332 | Integr Biol (Camb) | 2017 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/29159332 |
| Apoptotic Bodies Elicit Gas6-Mediated Migration of AXL-Expressing Tumor Cells. | Zweemer AJM, French CB, Mesfin J, Gordonov S, Meyer AS, Lauffenburger DA | Molecular cancer research : MCR | 28923840 | Mol Cancer Res | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28923840 |
| An engineered human Fc domain that behaves like a pH-toggle switch for ultra-long circulation persistence. | Lee CH, Kang TH, Godon O, Watanabe M, Delidakis G, Gillis CM, Sterlin D, Hardy D, Cogné M, Macdonald LE, Murphy AJ, Tu N, Lee J, McDaniel JR, Makowski E, Tessier PM, Meyer AS, Bruhns P, Georgiou G | Nature communications | 31695028 | Nat Commun | 2019 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/31695028 |
| Modeling cell-specific dynamics and regulation of the common gamma chain cytokines. | Farhat AM, Weiner AC, Posner C, Kim ZS, Orcutt-Jahns B, Carlson SM, Meyer AS | Cell reports | 33910015 | Cell Rep | 2021 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/33910015 |
| Systems Approaches to Cancer Biology. | Archer TC, Fertig EJ, Gosline SJ, Hafner M, Hughes SK, Joughin BA, Meyer AS, Piccolo SR, Shajahan-Haq AN | Cancer research | 27864348 | Cancer Res | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27864348 |
| JNK Pathway Activation Modulates Acquired Resistance to EGFR/HER2-Targeted Therapies. | Manole S, Richards EJ, Meyer AS | Cancer research | 27450453 | Cancer Res | 2016 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/27450453 |
| Dissecting FcγR Regulation through a Multivalent Binding Model. | Robinett RA, Guan N, Lux A, Biburger M, Nimmerjahn F, Meyer AS | Cell systems | 29960887 | Cell Syst | 2018 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/29960887 |
| Selectivity in subunit composition of Ena/VASP tetramers. | Riquelme DN, Meyer AS, Barzik M, Keating A, Gertler FB | Bioscience reports | 26221026 | Biosci Rep | 2015 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/26221026 |
| Systems biology approaches to measure and model phenotypic heterogeneity in cancer. | Meyer AS, Heiser LM | Current opinion in systems biology | 32864511 | Curr Opin Syst Biol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32864511 |
| HomeBank: An Online Repository of Daylong Child-Centered Audio Recordings. | VanDam M, Warlaumont AS, Bergelson E, Cristia A, Soderstrom M, De Palma P, MacWhinney B | Seminars in speech and language | 27111272 | Semin Speech Lang | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27111272 |
| Day by day, hour by hour: Naturalistic language input to infants. | Bergelson E, Amatuni A, Dailey S, Koorathota S, Tor S | Developmental science | 30094888 | Dev Sci | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30094888 |
| Mothers' Work Status and 17-month-olds' Productive Vocabulary. | Laing CE, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 30962769 | Infancy | 2019 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/30962769 |
| A thorough evaluation of the Language Environment Analysis (LENA) system. | Cristia A, Lavechin M, Scaff C, Soderstrom M, Rowland C, Räsänen O, Bunce J, Bergelson E | Behavior research methods | 32728916 | Behav Res Methods | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32728916 |
| Quantifying Talker Variability in North-American Infants' Daily Input. | Bulgarelli F, Mielke J, Bergelson E | Cognitive science | 34971003 | Cogn Sci | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34971003 |
| How adults understand what young children say. | Meylan SC, Foushee R, Wong NH, Bergelson E, Levy RP | Nature human behaviour | 37884678 | Nat Hum Behav | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37884678 |
| The Comprehension Boost in Early Word Learning: Older Infants Are Better Learners. | Bergelson E | Child development perspectives | 33569084 | Child Dev Perspect | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33569084 |
| What Do North American Babies Hear? A large-scale cross-corpus analysis. | Bergelson E, Casillas M, Soderstrom M, Seidl A, Warlaumont AS, Amatuni A | Developmental science | 30369005 | Dev Sci | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30369005 |
| Accuracy of the Language Environment Analysis System Segmentation and Metrics: A Systematic Review. | Cristia A, Bulgarelli F, Bergelson E | Journal of speech, language, and hearing research : JSLHR | 32302262 | J Speech Lang Hear Res | 2020 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/32302262 |
| Linking acoustic variability in the infants' input to their early word production. | Bulgarelli F, Bergelson E | Developmental science | 38978148 | Dev Sci | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/38978148 |
| Talker variability is not always the right noise: 14 month olds struggle to learn dissimilar word-object pairs under talker variability conditions. | Bulgarelli F, Bergelson E | Journal of experimental child psychology | 36395621 | J Exp Child Psychol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36395621 |
| Talking to talkers: Infants' talk status, but not their gender, is related to language input. | Dailey S, Bergelson E | Child development | 36458329 | Child Dev | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36458329 |
| Talker variability shapes early word representations in English-learning 8-month-olds. | Bulgarelli F, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 34997679 | Infancy | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34997679 |
| Measuring early word exposure in infants: A brief parent-report survey captures individual language input and predicts vocabulary outcomes. | Dong Y, Moore C, Ramadurai J, Bergelson E | Developmental psychology | 41801728 | Dev Psychol | 2026 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/41801728 |
| Early child measures outpredict input measures of preschool language skills in U.S. English learners. | Egan-Dailey S, Bergelson E | Developmental psychology | 40638291 | Dev Psychol | 2026 May | https://www.ncbi.nlm.nih.gov/pubmed/40638291 |
| A year of nouns from English-learning infants' daily lives: The SEEDLingS-Nouns dataset. | Kalenkovich E, Koorathota S, Tor S, Amatuni A, Egan-Dailey S, Moore C, Laing C, Garrison H, Baudet G, Bulgarelli F, Uner S, Righter L, Bergelson E | Behavior research methods | 41034519 | Behav Res Methods | 2025 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/41034519 |
| Look who's talking: A comparison of automated and human-generated speaker tags in naturalistic day-long recordings. | Bulgarelli F, Bergelson E | Behavior research methods | 31342467 | Behav Res Methods | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/31342467 |
| Nature and origins of the lexicon in 6-mo-olds. | Bergelson E, Aslin RN | Proceedings of the National Academy of Sciences of the United States of America | 29158399 | Proc Natl Acad Sci U S A | 2017 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/29158399 |
| A Collaborative Approach to Infant Research: Promoting Reproducibility, Best Practices, and Theory-Building. | Frank MC, Bergelson E, Bergmann C, Cristia A, Floccia C, Gervain J, Hamlin JK, Hannon EE, Kline M, Levelt C, Lew-Williams C, Nazzi T, Panneton R, Rabagliati H, Soderstrom M, Sullivan J, Waxman S, Yurovsky D | Infancy : the official journal of the International Society on Infant Studies | 31772509 | Infancy | 2017 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/31772509 |
| From babble to words: Infants' early productions match words and objects in their environment. | Laing C, Bergelson E | Cognitive psychology | 32504852 | Cogn Psychol | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32504852 |
| Point, walk, talk: Links between three early milestones, from observation and parental report. | Moore C, Dailey S, Garrison H, Amatuni A, Bergelson E | Developmental psychology | 31094558 | Dev Psychol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31094558 |
| Familiarity plays a small role in noun comprehension at 12-18 months. | Garrison H, Baudet G, Breitfeld E, Aberman A, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 32744800 | Infancy | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32744800 |
| Everyday language input and production in 1,001 children from six continents. | Bergelson E, Soderstrom M, Schwarz IC, Rowland CF, Ramírez-Esparza N, R Hamrick L, Marklund E, Kalashnikova M, Guez A, Casillas M, Benetti L, Alphen PV, Cristia A | Proceedings of the National Academy of Sciences of the United States of America | 38085754 | Proc Natl Acad Sci U S A | 2023 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/38085754 |
| Young Infants' Word Comprehension Given An Unfamiliar Talker or Altered Pronunciations. | Bergelson E, Swingley D | Child development | 28639708 | Child Dev | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28639708 |
| Semantic Specificity in One-Year-Olds' Word Comprehension. | Bergelson E, Aslin R | Language learning and development : the official journal of the Society for Language Development | 29200981 | Lang Learn Dev | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29200981 |
| Artificial intelligence-powered 3D analysis of video-based caregiver-child interactions. | Weng Z, Bravo-Sánchez L, Wang Z, Howard C, Xenochristou M, Meister N, Kanazawa A, Milstein A, Bergelson E, Humphreys KL, Sanders LM, Yeung-Levy S | Science advances | 39951536 | Sci Adv | 2025 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/39951536 |
| Vocal development in a large-scale crosslinguistic corpus. | Cychosz M, Cristia A, Bergelson E, Casillas M, Baudet G, Warlaumont AS, Scaff C, Yankowitz L, Seidl A | Developmental science | 33497512 | Dev Sci | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33497512 |
| Analyzing the effect of sibling number on input and output in the first 18 months. | Laing C, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 38183663 | Infancy | 2024 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/38183663 |
| Racial/Ethnic Disparities in Club Drug Use, Situational Club Drug Use during Sex, and Sexual Risk Behaviors among Alcohol-Using Men Who Have Sex with Men (MSM) in San Francisco. | Santos GM, Hernandez C, Lam E, Hern J, Rowe C | Substance use & misuse | 38307836 | Subst Use Misuse | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38307836 |
| Acceptability of pharmacotherapy for hazardous alcohol use among men who have sex with men: Findings from a qualitative study. | Hsiang E, Jennings D, Matheson T, Hern J, Euren J, Santos GM | Addictive behaviors reports | 30258972 | Addict Behav Rep | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30258972 |
| Does HIV Pre-Exposure Prophylaxis Modify the Effect of Partnership Characteristics on Condom Use? A Cross-Sectional Study of Sexual Partnerships Among Men Who Have Sex with Men in San Francisco, California. | Prescott MR, Hern J, Petersen M, Santos GM | AIDS patient care and STDs | 30932698 | AIDS Patient Care STDS | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30932698 |
| Binge drinking concurrent with anal intercourse and condom use among men who have sex with men. | Rowe C, Liou T, Vittinghoff E, Coffin PO, Santos GM | AIDS care | 27241085 | AIDS Care | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27241085 |
| Correlates of high phosphatidylethanol (PEth) levels and their concordance with self-reported heavy alcohol consumption among men who have sex with men who binge drink alcohol. | McLaughlin MF, Jain JP, Ikeda J, Walker JE, Coffin P, Santos GM | Alcoholism, clinical and experimental research | 35722862 | Alcohol Clin Exp Res | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35722862 |
| Social and Behavioral Correlates of Sexually Transmitted Infections among Men who Have Sex with Men who Use Alcohol in the San Francisco Bay Area. | Jain JP, Gyamerah AO, Baguso GN, Dawson-Rose C, Ikeda J, Santos GM | American journal of men's health | 34134567 | Am J Mens Health | 2021 May-Jun | https://www.ncbi.nlm.nih.gov/pubmed/34134567 |
| Pervasive Heavy Alcohol Use and Correlates of Increasing Levels of Binge Drinking among Men Who Have Sex with Men, San Francisco, 2011. | Santos GM, Jin H, Raymond HF | Journal of urban health : bulletin of the New York Academy of Medicine | 25895622 | J Urban Health | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/25895622 |
| Targeted Oral Naltrexone for Mild to Moderate Alcohol Use Disorder Among Sexual and Gender Minority Men: A Randomized Trial. | Santos GM, Ikeda J, Coffin P, Walker J, Matheson T, Ali A, McLaughlin M, Jain J, Arenander J, Vittinghoff E, Batki S | The American journal of psychiatry | 36285404 | Am J Psychiatry | 2022 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/36285404 |
| Within-week associations between alcohol and other substance use and interaction with naltrexone among sexual and gender minority men in San Francisco, California, USA. | Turner CM, Schmitz JM, Ikeda J, Santos GM | Addiction (Abingdon, England) | 40204626 | Addiction | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40204626 |
| Interest in the Use of Herbal Supplements to Close the Treatment Gap for Hazardous Alcohol Use Among Men Who Have Sex With Men: Secondary Analysis of a Cross-Sectional Study. | Hernandez C, Rowe C, Ikeda J, Arenander J, Santos GM | JMIR formative research | 39471379 | JMIR Form Res | 2024 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/39471379 |
| Syndemic conditions associated with hazardous alcohol consumption among sexual minority men in San Francisco. | Ngo TP, Cuffaro T, Santos GM | Drug and alcohol dependence reports | 39619334 | Drug Alcohol Depend Rep | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39619334 |
| Alcohol interventions for persons with HIV: Meta-analysis of randomized controlled trials using phosphatidylethanol and self-report. | Hahn JA, Kane JC, Fatch R, Espinosa da Silva C, Emenyonu NI, Scheffler A, Chirayil P, So-Armah K, Kahler CW, Conroy AA, Edelman EJ, Woolf-King S, Parry CD, Kiene SM, Chamie G, Muyindike WR, Adong J, Go VF, Cook RL, Morojele NK, Fiellin DA, Santos GM, Tahir P, Samet J, Krupitsky E, Allen IE | Drug and alcohol dependence | 40992009 | Drug Alcohol Depend | 2025 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/40992009 |
| Prevalence and correlates of hazardous alcohol consumption and binge drinking among men who have sex with men (MSM) in San Francisco. | Santos GM, Rowe C, Hern J, Walker JE, Ali A, Ornelaz M, Prescott M, Coffin P, McFarland W, Raymond HF | PloS one | 30118495 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30118495 |
| Correlates of Alcohol-Using Network Size Among Men Who Have Sex with Men in San Francisco, CA. | Garcia A, Rowe C, Turner C, Santos GM | American journal of men's health | 33899602 | Am J Mens Health | 2021 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/33899602 |
| Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response. | Guerra-Moreno A, Isasa M, Bhanu MK, Waterman DP, Eapen VV, Gygi SP, Hanna J | The Journal of biological chemistry | 26491016 | J Biol Chem | 2015 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/26491016 |
| Solution Structure of the Cuz1 AN1 Zinc Finger Domain: An Exposed LDFLP Motif Defines a Subfamily of AN1 Proteins. | Sun ZJ, Bhanu MK, Allan MG, Arthanari H, Wagner G, Hanna J | PloS one | 27662200 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27662200 |
| Tmc1 Is a Dynamically Regulated Effector of the Rpn4 Proteotoxic Stress Response. | Guerra-Moreno A, Hanna J | The Journal of biological chemistry | 27226598 | J Biol Chem | 2016 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/27226598 |
| Induction of proteotoxic stress by the mycotoxin patulin. | Guerra-Moreno A, Hanna J | Toxicology letters | 28529145 | Toxicol Lett | 2017 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/28529145 |
| Regulation of the unfolded protein response in yeast by oxidative stress. | Guerra-Moreno A, Ang J, Welsch H, Jochem M, Hanna J | FEBS letters | 31002390 | FEBS Lett | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/31002390 |
| Mechanism of proteasome gate modulation by assembly chaperones Pba1 and Pba2. | Schnell HM, Ang J, Rawson S, Walsh RM Jr, Micoogullari Y, Hanna J | The Journal of biological chemistry | 35398095 | J Biol Chem | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35398095 |
| Structures of chaperone-associated assembly intermediates reveal coordinated mechanisms of proteasome biogenesis. | Schnell HM, Walsh RM Jr, Rawson S, Kaur M, Bhanu MK, Tian G, Prado MA, Guerra-Moreno A, Paulo JA, Gygi SP, Roelofs J, Finley D, Hanna J | Nature structural & molecular biology | 33846632 | Nat Struct Mol Biol | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33846632 |
| Phospholipase Lpl1 links lipid droplet function with quality control protein degradation. | Weisshaar N, Welsch H, Guerra-Moreno A, Hanna J | Molecular biology of the cell | 28100635 | Mol Biol Cell | 2017 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/28100635 |
| Yeast PI31 inhibits the proteasome by a direct multisite mechanism. | Rawson S, Walsh RM Jr, Velez B, Schnell HM, Jiao F, Blickling M, Ang J, Bhanu MK, Huang L, Hanna J | Nature structural & molecular biology | 35927584 | Nat Struct Mol Biol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35927584 |
| Protein Degradation and the Pathologic Basis of Disease. | Hanna J, Guerra-Moreno A, Ang J, Micoogullari Y | The American journal of pathology | 30312581 | Am J Pathol | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30312581 |
| Targeted Degradation of Glucose Transporters Protects against Arsenic Toxicity. | Jochem M, Ende L, Isasa M, Ang J, Schnell H, Guerra-Moreno A, Micoogullari Y, Bhanu M, Gygi SP, Hanna J | Molecular and cellular biology | 30886123 | Mol Cell Biol | 2019 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/30886123 |
| Dysregulation of very-long-chain fatty acid metabolism causes membrane saturation and induction of the unfolded protein response. | Micoogullari Y, Basu SS, Ang J, Weisshaar N, Schmitt ND, Abdelmoula WM, Lopez B, Agar JN, Agar N, Hanna J | Molecular biology of the cell | 31746669 | Mol Biol Cell | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31746669 |
| Thiol-based direct threat sensing by the stress-activated protein kinase Hog1. | Guerra-Moreno A, Prado MA, Ang J, Schnell HM, Micoogullari Y, Paulo JA, Finley D, Gygi SP, Hanna J | Science signaling | 31772124 | Sci Signal | 2019 Nov 26 | https://www.ncbi.nlm.nih.gov/pubmed/31772124 |
| Reg1 and Snf1 regulate stress-induced relocalization of protein phosphatase-1 to cytoplasmic granules. | Schnell HM, Jochem M, Micoogullari Y, Riggs CL, Ivanov P, Welsch H, Ravindran R, Anderson P, Robinson LC, Tatchell K, Hanna J | The FEBS journal | 33682330 | FEBS J | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33682330 |
| Escherichia coli self-organizes developmental rosettes. | Puri D, Allison KR | Proceedings of the National Academy of Sciences of the United States of America | 38814871 | Proc Natl Acad Sci U S A | 2024 Jun 4 | https://www.ncbi.nlm.nih.gov/pubmed/38814871 |
| Resuscitation dynamics reveal persister partitioning after antibiotic treatment. | Fang X, Allison KR | Molecular systems biology | 36866643 | Mol Syst Biol | 2023 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/36866643 |
| Potentiating aminoglycoside antibiotics to reduce their toxic side effects. | Rosenberg CR, Fang X, Allison KR | PloS one | 32877437 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32877437 |
| Bi-allelic Loss of CDKN2A Initiates Melanoma Invasion via BRN2 Activation. | Zeng H, Jorapur A, Shain AH, Lang UE, Torres R, Zhang Y, McNeal AS, Botton T, Lin J, Donne M, Bastian IN, Yu R, North JP, Pincus L, Ruben BS, Joseph NM, Yeh I, Bastian BC, Judson RL | Cancer cell | 29990501 | Cancer Cell | 2018 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/29990501 |
| High accuracy label-free classification of single-cell kinetic states from holographic cytometry of human melanoma cells. | Hejna M, Jorapur A, Song JS, Judson RL | Scientific reports | 28931937 | Sci Rep | 2017 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/28931937 |
| BRAF(V600E) induces reversible mitotic arrest in human melanocytes via microrna-mediated suppression of AURKB. | McNeal AS, Belote RL, Zeng H, Urquijo M, Barker K, Torres R, Curtin M, Shain AH, Andtbacka RH, Holmen S, Lum DH, McCalmont TH, VanBrocklin MW, Grossman D, Wei ML, Lang UE, Judson-Torres RL | eLife | 34812139 | Elife | 2021 Nov 23 | https://www.ncbi.nlm.nih.gov/pubmed/34812139 |
| MicroRNA Ratios Distinguish Melanomas from Nevi. | Torres R, Lang UE, Hejna M, Shelton SJ, Joseph NM, Shain AH, Yeh I, Wei ML, Oldham MC, Bastian BC, Judson-Torres RL | The Journal of investigative dermatology | 31580842 | J Invest Dermatol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31580842 |
| The genomic landscapes of individual melanocytes from human skin. | Tang J, Fewings E, Chang D, Zeng H, Liu S, Jorapur A, Belote RL, McNeal AS, Tan TM, Yeh I, Arron ST, Judson-Torres RL, Bastian BC, Shain AH | Nature | 33029006 | Nature | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33029006 |
| Evaluation of holographic imaging cytometer holomonitor M4® motility applications. | Zhang Y, Judson RL | Cytometry. Part A : the journal of the International Society for Analytical Cytology | 30343513 | Cytometry A | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/30343513 |
| A BRN2:MYC transcriptional axis regulates interconversion between therapy-resistant and tumorigenic phenotypes in melanoma. | Zhang Y, Urquijo MA, Zitnay RG, Marks K, Belote RL, Hansen MMK, Ferita M, Neuendorf HM, Liu T, Smith EA, Mehrabad EM, Hejna M, Moustafa TE, Lange D, Hu M, Vand-Rajabpour F, Done A, Becker CA, Lieberman M, Chang M, Lohman BK, Stubben CJ, Reeves MQ, Zhang X, Weinberger LS, VanBrocklin MW, Deacon DC, Grossman D, Spike BT, Lex A, Boyle GM, Kulkarni R, Zangle TA, Judson-Torres RL | Cell reports | 41405996 | Cell Rep | 2025 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/41405996 |
| Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome. | Pincus D, Anandhakumar J, Thiru P, Guertin MJ, Erkine AM, Gross DS | Molecular biology of the cell | 30332327 | Mol Biol Cell | 2018 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/30332327 |
| Subcellular localization of the J-protein Sis1 regulates the heat shock response. | Feder ZA, Ali A, Singh A, Krakowiak J, Zheng X, Bindokas VP, Wolfgeher D, Kron SJ, Pincus D | The Journal of cell biology | 33326013 | J Cell Biol | 2021 Jan 4 | https://www.ncbi.nlm.nih.gov/pubmed/33326013 |
| Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis. | Solís EJ, Pandey JP, Zheng X, Jin DX, Gupta PB, Airoldi EM, Pincus D, Denic V | Molecular cell | 29395071 | Mol Cell | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29395071 |
| Hsf1 and Hsp70 constitute a two-component feedback loop that regulates the yeast heat shock response. | Krakowiak J, Zheng X, Patel N, Feder ZA, Anandhakumar J, Valerius K, Gross DS, Khalil AS, Pincus D | eLife | 29393852 | Elife | 2018 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/29393852 |
| Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis. | Solís EJ, Pandey JP, Zheng X, Jin DX, Gupta PB, Airoldi EM, Pincus D, Denic V | Molecular cell | 27320198 | Mol Cell | 2016 Jul 7 | https://www.ncbi.nlm.nih.gov/pubmed/27320198 |
| Size doesn't matter in the heat shock response. | Pincus D | Current genetics | 27502399 | Curr Genet | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/27502399 |
| Multi-kinase control of environmental stress responsive transcription. | Mace K, Krakowiak J, El-Samad H, Pincus D | PloS one | 32160258 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32160258 |
| Persistent Activation of mRNA Translation by Transient Hsp90 Inhibition. | Tsvetkov P, Eisen TJ, Heinrich SU, Brune Z, Hallacli E, Newby GA, Kayatekin C, Pincus D, Lindquist S | Cell reports | 32783929 | Cell Rep | 2020 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/32783929 |
| Delayed Ras/PKA signaling augments the unfolded protein response. | Pincus D, Aranda-Díaz A, Zuleta IA, Walter P, El-Samad H | Proceedings of the National Academy of Sciences of the United States of America | 25275008 | Proc Natl Acad Sci U S A | 2014 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/25275008 |
| Specificity in endoplasmic reticulum-stress signaling in yeast entails a step-wise engagement of HAC1 mRNA to clusters of the stress sensor Ire1. | van Anken E, Pincus D, Coyle S, Aragón T, Osman C, Lari F, Gómez Puerta S, Korennykh AV, Walter P | eLife | 25549299 | Elife | 2014 Dec 30 | https://www.ncbi.nlm.nih.gov/pubmed/25549299 |
| tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae. | Damon JR, Pincus D, Ploegh HL | Molecular biology of the cell | 25392298 | Mol Biol Cell | 2015 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/25392298 |
| Unrestrained AMPylation targets cytosolic chaperones and activates the heat shock response. | Truttmann MC, Zheng X, Hanke L, Damon JR, Grootveld M, Krakowiak J, Pincus D, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 28031489 | Proc Natl Acad Sci U S A | 2017 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/28031489 |
| Chaperone AMPylation modulates aggregation and toxicity of neurodegenerative disease-associated polypeptides. | Truttmann MC, Pincus D, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 29760078 | Proc Natl Acad Sci U S A | 2018 May 29 | https://www.ncbi.nlm.nih.gov/pubmed/29760078 |
| Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity. | Kayatekin C, Amasino A, Gaglia G, Flannick J, Bonner JM, Fanning S, Narayan P, Barrasa MI, Pincus D, Landgraf D, Nelson J, Hesse WR, Costanzo M, AMP T2D-GENES Consortium, Myers CL, Boone C, Florez JC, Lindquist S | Cell | 29526462 | Cell | 2018 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/29526462 |
| m(6)A modification of a 3' UTR site reduces RME1 mRNA levels to promote meiosis. | Bushkin GG, Pincus D, Morgan JT, Richardson K, Lewis C, Chan SH, Bartel DP, Fink GR | Nature communications | 31363087 | Nat Commun | 2019 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/31363087 |
| An evolution-based strategy for engineering allosteric regulation. | Pincus D, Resnekov O, Reynolds KA | Physical biology | 28266924 | Phys Biol | 2017 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/28266924 |
| Engineering allosteric regulation in protein kinases. | Pincus D, Pandey JP, Feder ZA, Creixell P, Resnekov O, Reynolds KA | Science signaling | 30401787 | Sci Signal | 2018 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/30401787 |
| Lipidomic Analysis of α-Synuclein Neurotoxicity Identifies Stearoyl CoA Desaturase as a Target for Parkinson Treatment. | Fanning S, Haque A, Imberdis T, Baru V, Barrasa MI, Nuber S, Termine D, Ramalingam N, Ho GPH, Noble T, Sandoe J, Lou Y, Landgraf D, Freyzon Y, Newby G, Soldner F, Terry-Kantor E, Kim TE, Hofbauer HF, Becuwe M, Jaenisch R, Pincus D, Clish CB, Walther TC, Farese RV Jr, Srinivasan S, Welte MA, Kohlwein SD, Dettmer U, Lindquist S, Selkoe D | Molecular cell | 30527540 | Mol Cell | 2019 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/30527540 |
| Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation. | Zheng X, Krakowiak J, Patel N, Beyzavi A, Ezike J, Khalil AS, Pincus D | eLife | 27831465 | Elife | 2016 Nov 10 | https://www.ncbi.nlm.nih.gov/pubmed/27831465 |
| Hsf1 Phosphorylation Generates Cell-to-Cell Variation in Hsp90 Levels and Promotes Phenotypic Plasticity. | Zheng X, Beyzavi A, Krakowiak J, Patel N, Khalil AS, Pincus D | Cell reports | 29562166 | Cell Rep | 2018 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/29562166 |
| Serial Immunoprecipitation of 3xFLAG/V5-tagged Yeast Proteins to Identify Specific Interactions with Chaperone Proteins. | Zheng X, Pincus D | Bio-protocol | 29104895 | Bio Protoc | 2017 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/29104895 |
| Heat Shock Factor 1 Drives Intergenic Association of Its Target Gene Loci upon Heat Shock. | Chowdhary S, Kainth AS, Pincus D, Gross DS | Cell reports | 30605674 | Cell Rep | 2019 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/30605674 |
| Hierarchical Organization Endows the Kinase Domain with Regulatory Plasticity. | Creixell P, Pandey JP, Palmeri A, Bhattacharyya M, Creixell M, Ranganathan R, Pincus D, Yaffe MB | Cell systems | 30243563 | Cell Syst | 2018 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/30243563 |
| Blue light receptor CRY1 regulates HSFA1d nuclear localization to promote plant thermotolerance. | Gao J, Zhang R, Zheng L, Song L, Ji M, Li S, Wang J, Yang J, Kang G, Zhang P, Shi Y, Jiao Y, Pincus D, Zheng X | Cell reports | 37703177 | Cell Rep | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37703177 |
| Identifying mutation specific cancer pathways using a structurally resolved protein interaction network. | Engin HB, Hofree M, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 25592571 | Pac Symp Biocomput | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25592571 |
| Immune DNA signature of T-cell infiltration in breast tumor exomes. | Levy E, Marty R, Gárate Calderón V, Woo B, Dow M, Armisen R, Carter H, Harismendy O | Scientific reports | 27452728 | Sci Rep | 2016 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/27452728 |
| Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss. | Gross AM, Orosco RK, Shen JP, Egloff AM, Carter H, Hofree M, Choueiri M, Coffey CS, Lippman SM, Hayes DN, Cohen EE, Grandis JR, Nguyen QT, Ideker T | Nature genetics | 25086664 | Nat Genet | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25086664 |
| Identifying Driver Interfaces Enriched for Somatic Missense Mutations in Tumors. | Ozturk K, Carter H | Methods in molecular biology (Clifton, N.J.) | 30542990 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30542990 |
| Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival. | Pyke RM, Genolet R, Harari A, Coukos G, Gfeller D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864318 | Pac Symp Biocomput | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30864318 |
| Integrative genomic analysis of mouse and human hepatocellular carcinoma. | Dow M, Pyke RM, Tsui BY, Alexandrov LB, Nakagawa H, Taniguchi K, Seki E, Harismendy O, Shalapour S, Karin M, Carter H, Font-Burgada J | Proceedings of the National Academy of Sciences of the United States of America | 30287485 | Proc Natl Acad Sci U S A | 2018 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/30287485 |
| Common genetic variation in the germline influences where and how tumors develop. | Carter H, Ideker T | Molecular & cellular oncology | 28616579 | Mol Cell Oncol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28616579 |
| MHC-I Genotype Restricts the Oncogenic Mutational Landscape. | Marty R, Kaabinejadian S, Rossell D, Slifker MJ, van de Haar J, Engin HB, de Prisco N, Ideker T, Hildebrand WH, Font-Burgada J, Carter H | Cell | 29107334 | Cell | 2017 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/29107334 |
| Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes. | Castro A, Ozturk K, Pyke RM, Xian S, Zanetti M, Carter H | BMC medical genomics | 31345234 | BMC Med Genomics | 2019 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/31345234 |
| Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. | Zhou Y, Bastian IN, Long MD, Dow M, Li W, Liu T, Ngu RK, Antonucci L, Huang JY, Phung QT, Zhao XH, Banerjee S, Lin XJ, Wang H, Dang B, Choi S, Karin D, Su H, Ellisman MH, Jamieson C, Bosenberg M, Cheng Z, Haybaeck J, Kenner L, Fisch KM, Bourgon R, Hernandez G, Lill JR, Liu S, Carter H, Mellman I, Karin M, Shalapour S | Proceedings of the National Academy of Sciences of the United States of America | 33602823 | Proc Natl Acad Sci U S A | 2021 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/33602823 |
| Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response. | Zhang P, Kitchen-Smith I, Xiong L, Stracquadanio G, Brown K, Richter PH, Wallace MD, Bond E, Sahgal N, Moore S, Nornes S, De Val S, Surakhy M, Sims D, Wang X, Bell DA, Zeron-Medina J, Jiang Y, Ryan AJ, Selfe JL, Shipley J, Kar S, Pharoah PD, Loveday C, Jansen R, Grochola LF, Palles C, Protheroe A, Millar V, Ebner DV, Pagadala M, Blagden SP, Maughan TS, Domingo E, Tomlinson I, Turnbull C, Carter H, Bond GL | Cancer research | 33558336 | Cancer Res | 2021 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/33558336 |
| The RUNX1-ETO target gene RASSF2 suppresses t(8;21) AML development and regulates Rac GTPase signaling. | Stoner SA, Liu KTH, Andrews ET, Liu M, Arimoto KI, Yan M, Davis AG, Weng S, Dow M, Xian S, DeKelver RC, Carter H, Zhang DE | Blood cancer journal | 32029705 | Blood Cancer J | 2020 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/32029705 |
| A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. | Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T | Nature genetics | 29610481 | Nat Genet | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29610481 |
| The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine. | Ozturk K, Dow M, Carlin DE, Bejar R, Carter H | Journal of molecular biology | 29908887 | J Mol Biol | 2018 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/29908887 |
| 3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry. | Velez DO, Tsui B, Goshia T, Chute CL, Han A, Carter H, Fraley SI | Nature communications | 29162797 | Nat Commun | 2017 Nov 21 | https://www.ncbi.nlm.nih.gov/pubmed/29162797 |
| Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment. | Wang T, Tsui B, Kreisberg JF, Robertson NA, Gross AM, Yu MK, Carter H, Brown-Borg HM, Adams PD, Ideker T | Genome biology | 28351423 | Genome Biol | 2017 Mar 28 | https://www.ncbi.nlm.nih.gov/pubmed/28351423 |
| Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. | Carter H, Marty R, Hofree M, Gross AM, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo GW, Gutkind JS, Ideker T | Cancer discovery | 28188128 | Cancer Discov | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28188128 |
| MHC-I genotype and tumor mutational burden predict response to immunotherapy. | Goodman AM, Castro A, Pyke RM, Okamura R, Kato S, Riviere P, Frampton G, Sokol E, Zhang X, Ball ED, Carter H, Kurzrock R | Genome medicine | 32430031 | Genome Med | 2020 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/32430031 |
| Structure-Based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces. | Engin HB, Kreisberg JF, Carter H | PloS one | 27043210 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27043210 |
| Modeling of RAS complexes supports roles in cancer for less studied partners. | Engin HB, Carlin D, Pratt D, Carter H | BMC biophysics | 28815022 | BMC Biophys | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28815022 |
| Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls. | Buckley AR, Standish KA, Bhutani K, Ideker T, Lasken RS, Carter H, Harismendy O, Schork NJ | BMC genomics | 28606096 | BMC Genomics | 2017 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/28606096 |
| Challenges in identifying cancer genes by analysis of exome sequencing data. | Hofree M, Carter H, Kreisberg JF, Bandyopadhyay S, Mischel PS, Friend S, Ideker T | Nature communications | 27417679 | Nat Commun | 2016 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/27417679 |
| MHC-I genotype drives early immune selection of oncogenic mutations. | Marty R, de Prisco N, Carter H, Font-Burgada J | Molecular & cellular oncology | 29487895 | Mol Cell Oncol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29487895 |
| Integrating molecular networks with genetic variant interpretation for precision medicine. | Capriotti E, Ozturk K, Carter H | Wiley interdisciplinary reviews. Systems biology and medicine | 30548534 | Wiley Interdiscip Rev Syst Biol Med | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30548534 |
| Extracting allelic read counts from 250,000 human sequencing runs in Sequence Read Archive. | Tsui B, Dow M, Skola D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864322 | Pac Symp Biocomput | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30864322 |
| Evolutionary Pressure against MHC Class II Binding Cancer Mutations. | Marty Pyke R, Thompson WK, Salem RM, Font-Burgada J, Zanetti M, Carter H | Cell | 30245014 | Cell | 2018 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/30245014 |
| IRE1α regulates macrophage polarization, PD-L1 expression, and tumor survival. | Batista A, Rodvold JJ, Xian S, Searles SC, Lew A, Iwawaki T, Almanza G, Waller TC, Lin J, Jepsen K, Carter H, Zanetti M | PLoS biology | 32520957 | PLoS Biol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32520957 |
| Predicting functional consequences of mutations using molecular interaction network features. | Ozturk K, Carter H | Human genetics | 34432150 | Hum Genet | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34432150 |
| Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. | Klie A, Tsui BY, Mollah S, Skola D, Dow M, Hsu CN, Carter H | Database : the journal of biological databases and curation | 33914028 | Database (Oxford) | 2021 Apr 29 | https://www.ncbi.nlm.nih.gov/pubmed/33914028 |
| Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis. | Yano JM, Yu K, Donaldson GP, Shastri GG, Ann P, Ma L, Nagler CR, Ismagilov RF, Mazmanian SK, Hsiao EY | Cell | 25860609 | Cell | 2015 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/25860609 |
| Interactions between the microbiota, immune and nervous systems in health and disease. | Fung TC, Olson CA, Hsiao EY | Nature neuroscience | 28092661 | Nat Neurosci | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/28092661 |
| The Microbial Olympics 2016. | Nelson MB, Chase AB, Martiny JB, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, Ackermann M, Smillie C, Chien D, Alm E, Jermy AJ | Nature microbiology | 27573121 | Nat Microbiol | 2016 Jul 26 | https://www.ncbi.nlm.nih.gov/pubmed/27573121 |
| The Microbiome as a Modifier of Neurodegenerative Disease Risk. | Fang P, Kazmi SA, Jameson KG, Hsiao EY | Cell host & microbe | 32791113 | Cell Host Microbe | 2020 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/32791113 |
| Emerging Roles for the Gut Microbiome in Autism Spectrum Disorder. | Vuong HE, Hsiao EY | Biological psychiatry | 27773355 | Biol Psychiatry | 2017 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/27773355 |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 29804833 | Cell | 2018 Jun 14 | https://www.ncbi.nlm.nih.gov/pubmed/29804833 |
| Intestinal serotonin and fluoxetine exposure modulate bacterial colonization in the gut. | Fung TC, Vuong HE, Luna CDG, Pronovost GN, Aleksandrova AA, Riley NG, Vavilina A, McGinn J, Rendon T, Forrest LR, Hsiao EY | Nature microbiology | 31477894 | Nat Microbiol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31477894 |
| The Microbiome and Host Behavior. | Vuong HE, Yano JM, Fung TC, Hsiao EY | Annual review of neuroscience | 28301775 | Annu Rev Neurosci | 2017 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/28301775 |
| Defining Dysbiosis in Disorders of Movement and Motivation. | Fields CT, Sampson TR, Bruce-Keller AJ, Kiraly DD, Hsiao EY, de Vries GJ | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30381433 | J Neurosci | 2018 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/30381433 |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 30007420 | Cell | 2018 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/30007420 |
| Similarity in meal plan use among first-year roommates. | van Woerden I, Schaefer DR, Hruschka D, Vega-Lopez S, Adams M, Bruening M | Appetite | 31593746 | Appetite | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31593746 |
| Evaluating Potential Behavioral Mediators for Increasing Similarity in Friends' Body Size among College Students. | van Woerden I, Hruschka D, Schaefer DR, Fine KL, Bruening M | Nutrients | 31450804 | Nutrients | 2019 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/31450804 |
| Changes in Weight Status and the Intestinal Microbiota Among College Freshman, Aged 18 Years. | Journey EK, Ortega-Santos CP, Bruening M, Whisner CM | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 31477511 | J Adolesc Health | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31477511 |
| Social contexts are related to health behaviors: mEMA findings from the SPARC study. | van Woerden I, Bruening M | Appetite | 35537660 | Appetite | 2022 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/35537660 |
| Finding and Keeping Friends in College and Their Influence on Alcohol Use: A Network Analysis. | Schaefer DR, Van Woerden I, Hruschka D, Bruening M | Journal of studies on alcohol and drugs | 33573730 | J Stud Alcohol Drugs | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33573730 |
| Weight Shame, Social Connection, and Depressive Symptoms in Late Adolescence. | Brewis AA, Bruening M | International journal of environmental research and public health | 29723962 | Int J Environ Res Public Health | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29723962 |
| The Association among Emotions and Food Choices in First-Year College Students Using mobile-Ecological Momentary Assessments. | Ashurst J, van Woerden I, Dunton G, Todd M, Ohri-Vachaspati P, Swan P, Bruening M | BMC public health | 29716572 | BMC Public Health | 2018 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/29716572 |
| Longitudinal social networks impacts on weight and weight-related behaviors assessed using mobile-based ecological momentary assessments: Study Protocols for the SPARC study. | Bruening M, Ohri-Vachaspati P, Brewis A, Laska M, Todd M, Hruschka D, Schaefer DR, Whisner CM, Dunton G | BMC public health | 27576358 | BMC Public Health | 2016 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/27576358 |
| Young adults' BMI and changes in romantic relationship status during the first semester of college. | van Woerden I, Brewis A, Hruschka D, Dunton G, Adams MA, Bruening M | PloS one | 32214397 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32214397 |
| Association of food insecurity on gut microbiome and metabolome profiles in a diverse college-based sample. | Mohr AE, Jasbi P, Vander Wyst KB, van Woerden I, Shi X, Gu H, Whisner CM, Bruening M | Scientific reports | 35999348 | Sci Rep | 2022 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/35999348 |
| Longitudinal assessment of food insecurity status on the gut microbiome and metabolome of first-year college students. | Mohr AE, Jasbi P, van Woerden I, Bowes DA, Chi J, Gu H, Bruening M, Whisner CM | The British journal of nutrition | 40524571 | Br J Nutr | 2025 Jun 28 | https://www.ncbi.nlm.nih.gov/pubmed/40524571 |
| Microbial Ecology and Metabolism of Emerging Adulthood: Gut Microbiome Insights from a College Freshman Cohort. | Mohr AE, Jasbi P, van Woerden I, Chi J, Gu H, Bruening M, Whisner CM | Gut microbes reports | 39221110 | Gut Microbes Rep | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39221110 |
| Food Insecure College Students and Objective Measurements of Their Unused Meal Plans. | van Woerden I, Hruschka D, Vega-Lόpez S, Schaefer DR, Adams M, Bruening M | Nutrients | 31018554 | Nutrients | 2019 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/31018554 |
| A Systematic Review of Methods and Procedures Used in Ecological Momentary Assessments of Diet and Physical Activity Research in Youth: An Adapted STROBE Checklist for Reporting EMA Studies (CREMAS). | Liao Y, Skelton K, Dunton G, Bruening M | Journal of medical Internet research | 27328833 | J Med Internet Res | 2016 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/27328833 |
| Social Mechanisms for Weight-related Behaviors among Emerging Adults. | Bruening M, Huberty J, Skelton K, Brennhofer S, Voytyuk M | Health behavior and policy review | 31867404 | Health Behav Policy Rev | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31867404 |
| First-year college students' weight change is influenced by their randomly assigned roommates' BMI. | van Woerden I, Hruschka D, Brewis A, Schaefer DR, Bruening M | PloS one | 33232356 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33232356 |
| Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study. | Whisner CM, Maldonado J, Dente B, Krajmalnik-Brown R, Bruening M | BMC microbiology | 30541450 | BMC Microbiol | 2018 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/30541450 |
| Factors Related to the High Rates of Food Insecurity among Diverse, Urban College Freshmen. | Bruening M, Brennhofer S, van Woerden I, Todd M, Laska M | Journal of the Academy of Nutrition and Dietetics | 27212147 | J Acad Nutr Diet | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27212147 |
| The Struggle Is Real: A Systematic Review of Food Insecurity on Postsecondary Education Campuses. | Bruening M, Argo K, Payne-Sturges D, Laska MN | Journal of the Academy of Nutrition and Dietetics | 28754200 | J Acad Nutr Diet | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28754200 |
| Weight stigma and eating behaviors on a college campus: Are students immune to stigma's effects? | Brewis A, Brennhofer S, van Woerden I, Bruening M | Preventive medicine reports | 27833844 | Prev Med Rep | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27833844 |
| A Mobile Ecological Momentary Assessment Tool (devilSPARC) for Nutrition and Physical Activity Behaviors in College Students: A Validation Study. | Bruening M, van Woerden I, Todd M, Brennhofer S, Laska MN, Dunton G | Journal of medical Internet research | 27465701 | J Med Internet Res | 2016 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/27465701 |
| Hungry to learn: the prevalence and effects of food insecurity on health behaviors and outcomes over time among a diverse sample of university freshmen. | Bruening M, van Woerden I, Todd M, Laska MN | The international journal of behavioral nutrition and physical activity | 29347963 | Int J Behav Nutr Phys Act | 2018 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/29347963 |
| Friendship as a social mechanism influencing body mass index (BMI) among emerging adults. | Bruening M, van Woerden I, Schaefer DR, Hruschka D, Brewis A, Whisner CM, Dunton GF, Todd M, Ohri-Vachaspati P, Laska MN | PloS one | 30562375 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30562375 |
| Gut microbiome diversity, variability, and latent community types compared with shifts in body weight during the freshman year of college in dormitory-housed adolescents. | Mohr AE, Ahern MM, Sears DD, Bruening M, Whisner CM | Gut microbes | 37642346 | Gut Microbes | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37642346 |
| Ketamine as a Prophylactic Against Stress-Induced Depressive-like Behavior. | Brachman RA, McGowan JC, Perusini JN, Lim SC, Pham TH, Faye C, Gardier AM, Mendez-David I, David DJ, Hen R, Denny CA | Biological psychiatry | 26037911 | Biol Psychiatry | 2016 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/26037911 |
| Activation of local inhibitory circuits in the dentate gyrus by adult-born neurons. | Drew LJ, Kheirbek MA, Luna VM, Denny CA, Cloidt MA, Wu MV, Jain S, Scharfman HE, Hen R | Hippocampus | 26662922 | Hippocampus | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/26662922 |
| Hippocampal memory traces are differentially modulated by experience, time, and adult neurogenesis. | Denny CA, Kheirbek MA, Alba EL, Tanaka KF, Brachman RA, Laughman KB, Tomm NK, Turi GF, Losonczy A, Hen R | Neuron | 24991962 | Neuron | 2014 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/24991962 |
| Prophylactic efficacy of 5-HT(4)R agonists against stress. | Chen BK, Mendez-David I, Luna VM, Faye C, Gardier AM, David DJ, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 31600767 | Neuropsychopharmacology | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31600767 |
| Divergence in the metabolome between natural aging and Alzheimer's disease. | Hunsberger HC, Greenwood BP, Tolstikov V, Narain NR, Kiebish MA, Denny CA | Scientific reports | 32699218 | Sci Rep | 2020 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/32699218 |
| Editorial: Molecular and Cellular Underpinnings of Age-Related Memory Loss. | Kosmidis S, Denny CA, Dranovsky A, Skoulakis EMC | Frontiers in cell and developmental biology | 34490280 | Front Cell Dev Biol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34490280 |
| Prophylactic Ketamine Attenuates Learned Fear. | McGowan JC, LaGamma CT, Lim SC, Tsitsiklis M, Neria Y, Brachman RA, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 28128336 | Neuropsychopharmacology | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28128336 |
| Sex-Specific Effects of Anxiety on Cognition and Activity-Dependent Neural Networks: Insights From (Female) Mice and (Wo)men. | Hunsberger HC, Lee S, Jin M, Lanio M, Whye A, Cha J, Scarlata M, Matthews LC, Jayaseelan K, Denny CA, Alzheimer’s Disease Neuroimaging Initiative | Biological psychiatry | 39349155 | Biol Psychiatry | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/39349155 |
| Prophylactic (R,S)-Ketamine and (2S,6S)-Hydroxynorketamine Decrease Fear Expression by Differentially Modulating Fear Neural Ensembles. | Mastrodonato A, Jin M, Kee N, Lanio M, Tapia J, Quintana L, Muñoz Zamora A, Deng SX, Xu X, Landry DW, Denny CA | Biological psychiatry | 39389408 | Biol Psychiatry | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/39389408 |
| Sex-Specific Effects of Anxiety on Cognition and Activity-Dependent Neural Networks: Insights from (Female) Mice and (Wo)Men. | Hunsberger HC, Lee S, Jin M, Lanio M, Whye A, Cha J, Scarlata M, Jayaseelan K, Denny CA | bioRxiv : the preprint server for biology | 37503264 | bioRxiv | 2023 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/37503264 |
| Traumatic Brain Injury-Induced Fear Generalization in Mice Involves Hippocampal Memory Trace Dysfunction and Is Alleviated by (R,S)-Ketamine. | McGowan JC, Ladner LR, Shubeck CX, Tapia J, LaGamma CT, Anqueira-González A, DeFrancesco A, Chen BK, Hunsberger HC, Sydnor EJ, Logan RW, Yu TS, Kernie SG, Denny CA | Biological psychiatry | 37423591 | Biol Psychiatry | 2024 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/37423591 |
| The participation of cortical amygdala in innate, odour-driven behaviour. | Root CM, Denny CA, Hen R, Axel R | Nature | 25383519 | Nature | 2014 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/25383519 |
| Ventral CA3 Activation Mediates Prophylactic Ketamine Efficacy Against Stress-Induced Depressive-like Behavior. | Mastrodonato A, Martinez R, Pavlova IP, LaGamma CT, Brachman RA, Robison AJ, Denny CA | Biological psychiatry | 29615190 | Biol Psychiatry | 2018 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/29615190 |
| Common Neurotransmission Recruited in (R,S)-Ketamine and (2R,6R)-Hydroxynorketamine-Induced Sustained Antidepressant-like Effects. | Pham TH, Defaix C, Xu X, Deng SX, Fabresse N, Alvarez JC, Landry DW, Brachman RA, Denny CA, Gardier AM | Biological psychiatry | 29174592 | Biol Psychiatry | 2018 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/29174592 |
| Optogenetic stimulation of dentate gyrus engrams restores memory in Alzheimer's disease mice. | Perusini JN, Cajigas SA, Cohensedgh O, Lim SC, Pavlova IP, Donaldson ZR, Denny CA | Hippocampus | 28667669 | Hippocampus | 2017 Oct | https://www.ncbi.nlm.nih.gov/pubmed/28667669 |
| Optimization of immunolabeling and clearing techniques for indelibly labeled memory traces. | Pavlova IP, Shipley SC, Lanio M, Hen R, Denny CA | Hippocampus | 29663578 | Hippocampus | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29663578 |
| Prophylactic ketamine alters nucleotide and neurotransmitter metabolism in brain and plasma following stress. | McGowan JC, Hill C, Mastrodonato A, LaGamma CT, Kitayev A, Brachman RA, Narain NR, Kiebish MA, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 29599484 | Neuropsychopharmacology | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29599484 |
| Improved specificity of hippocampal memory trace labeling. | Cazzulino AS, Martinez R, Tomm NK, Denny CA | Hippocampus | 26662713 | Hippocampus | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/26662713 |
| Distinct hippocampal engrams control extinction and relapse of fear memory. | Lacagnina AF, Brockway ET, Crovetti CR, Shue F, McCarty MJ, Sattler KP, Lim SC, Santos SL, Denny CA, Drew MR | Nature neuroscience | 30936555 | Nat Neurosci | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30936555 |
| Antidepressant but Not Prophylactic Ketamine Administration Alters Calretinin and Calbindin Expression in the Ventral Hippocampus. | LaGamma CT, Tang WW, Morgan AA, McGowan JC, Brachman RA, Denny CA | Frontiers in molecular neuroscience | 30459554 | Front Mol Neurosci | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30459554 |
| Prophylactic (R,S)-ketamine selectively protects against inflammatory stressors. | Mastrodonato A, Cohensedgh O, LaGamma CT, McGowan JC, Hunsberger HC, Denny CA | Behavioural brain research | 31563463 | Behav Brain Res | 2020 Jan 27 | https://www.ncbi.nlm.nih.gov/pubmed/31563463 |
| Sex-specific neurobiological actions of prophylactic (R,S)-ketamine, (2R,6R)-hydroxynorketamine, and (2S,6S)-hydroxynorketamine. | Chen BK, Luna VM, LaGamma CT, Xu X, Deng SX, Suckow RF, Cooper TB, Shah A, Brachman RA, Mendez-David I, David DJ, Gardier AM, Landry DW, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32417852 | Neuropsychopharmacology | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/32417852 |
| Adult-born hippocampal neurons bidirectionally modulate entorhinal inputs into the dentate gyrus. | Luna VM, Anacker C, Burghardt NS, Khandaker H, Andreu V, Millette A, Leary P, Ravenelle R, Jimenez JC, Mastrodonato A, Denny CA, Fenton AA, Scharfman HE, Hen R | Science (New York, N.Y.) | 31073064 | Science | 2019 May 10 | https://www.ncbi.nlm.nih.gov/pubmed/31073064 |
| Propranolol Decreases Fear Expression by Modulating Fear Memory Traces. | Leal Santos S, Stackmann M, Muñoz Zamora A, Mastrodonato A, De Landri AV, Vaughan N, Chen BK, Lanio M, Denny CA | Biological psychiatry | 33766406 | Biol Psychiatry | 2021 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/33766406 |
| Recent Advances in Higher-Order, Multimodal, Biomedical Imaging Agents. | Rieffel J, Chitgupi U, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 26185099 | Small | 2015 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/26185099 |
| A porphyrin-PEG polymer with rapid renal clearance. | Huang H, Hernandez R, Geng J, Sun H, Song W, Chen F, Graves SA, Nickles RJ, Cheng C, Cai W, Lovell JF | Biomaterials | 26517562 | Biomaterials | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26517562 |
| Sulfonated Polyethylenimine for Photosensitizer Conjugation and Targeting. | Chitgupi U, Zhang Y, Lo CY, Shao S, Song W, Geng J, Neelamegham S, Lovell JF | Bioconjugate chemistry | 26057017 | Bioconjug Chem | 2015 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/26057017 |
| Metal Chelation Modulates Phototherapeutic Properties of Mitoxantrone-Loaded Porphyrin-Phospholipid Liposomes. | Carter KA, Wang S, Geng J, Luo D, Shao S, Lovell JF | Molecular pharmaceutics | 26691879 | Mol Pharm | 2016 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/26691879 |
| Porphyrin-phospholipid liposomes with tunable leakiness. | Luo D, Carter KA, Razi A, Geng J, Shao S, Lin C, Ortega J, Lovell JF | Journal of controlled release : official journal of the Controlled Release Society | 26578438 | J Control Release | 2015 Dec 28 | https://www.ncbi.nlm.nih.gov/pubmed/26578438 |
| Bimodal Targeting Using Sulfonated, Mannosylated PEI for Combined Gene Delivery and Photodynamic Therapy. | Chitgupi U, Li Y, Chen M, Shao S, Beitelshees M, Tan MJ, Neelamegham S, Pfeifer BA, Jones C, Lovell JF | Photochemistry and photobiology | 27935058 | Photochem Photobiol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/27935058 |
| Implantable Tin Porphyrin-PEG Hydrogels with pH-Responsive Fluorescence. | Huang H, Chauhan S, Geng J, Qin Y, Watson DF, Lovell JF | Biomacromolecules | 28146351 | Biomacromolecules | 2017 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/28146351 |
| Rapid Light-Triggered Drug Release in Liposomes Containing Small Amounts of Unsaturated and Porphyrin-Phospholipids. | Luo D, Li N, Carter KA, Lin C, Geng J, Shao S, Huang WC, Qin Y, Atilla-Gokcumen GE, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 27121003 | Small | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27121003 |
| Coherent-weighted three-dimensional image reconstruction in linear-array-based photoacoustic tomography. | Wang D, Wang Y, Zhou Y, Lovell JF, Xia J | Biomedical optics express | 27231634 | Biomed Opt Express | 2016 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/27231634 |
| Surfactant-Stripped Frozen Pheophytin Micelles for Multimodal Gut Imaging. | Zhang Y, Wang D, Goel S, Sun B, Chitgupi U, Geng J, Sun H, Barnhart TE, Cai W, Xia J, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 27396479 | Adv Mater | 2016 Oct | https://www.ncbi.nlm.nih.gov/pubmed/27396479 |
| Short Drug-Light Intervals Improve Liposomal Chemophototherapy in Mice Bearing MIA PaCa-2 Xenografts. | Luo D, Carter KA, Geng J, He X, Lovell JF | Molecular pharmaceutics | 29608312 | Mol Pharm | 2018 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/29608312 |
| Enhanced drug delivery using sonoactivatable liposomes with membrane-embedded porphyrins. | Wang X, Yan F, Liu X, Wang P, Shao S, Sun Y, Sheng Z, Liu Q, Lovell JF, Zheng H | Journal of controlled release : official journal of the Controlled Release Society | 30075210 | J Control Release | 2018 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/30075210 |
| Metalloporphyrin Nanoparticles: Coordinating Diverse Theranostic Functions. | Shao S, Rajendiran V, Lovell JF | Coordination chemistry reviews | 30559508 | Coord Chem Rev | 2019 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/30559508 |
| Intrabilayer (64)Cu Labeling of Photoactivatable, Doxorubicin-Loaded Stealth Liposomes. | Luo D, Goel S, Liu HJ, Carter KA, Jiang D, Geng J, Kutyreff CJ, Engle JW, Huang WC, Shao S, Fang C, Cai W, Lovell JF | ACS nano | 29195037 | ACS Nano | 2017 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/29195037 |
| Vessel-Targeted Chemophototherapy with Cationic Porphyrin-Phospholipid Liposomes. | Luo D, Geng J, Li N, Carter KA, Shao S, Atilla-Gokcumen GE, Lovell JF | Molecular cancer therapeutics | 28729400 | Mol Cancer Ther | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28729400 |
| Emerging applications of porphyrins in photomedicine. | Huang H, Song W, Rieffel J, Lovell JF | Frontiers in physics | 28553633 | Front Phys | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28553633 |
| Multifunctional Liposomes for Image-Guided Intratumoral Chemo-Phototherapy. | Miranda D, Carter K, Luo D, Shao S, Geng J, Li C, Chitgupi U, Turowski SG, Li N, Atilla-Gokcumen GE, Spernyak JA, Lovell JF | Advanced healthcare materials | 28504409 | Adv Healthc Mater | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28504409 |
| Advanced Functional Nanomaterials for Theranostics. | Huang H, Lovell JF | Advanced functional materials | 28824357 | Adv Funct Mater | 2017 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/28824357 |
| Loading and Releasing Ciprofloxacin in Photoactivatable Liposomes. | Ghosh S, Qi R, Carter KA, Zhang G, Pfeifer BA, Lovell JF | Biochemical engineering journal | 31105464 | Biochem Eng J | 2019 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/31105464 |
| Binding of an amphiphilic phthalocyanine to pre-formed liposomes confers light-triggered cargo release. | Macháček M, Carter KA, Kostelanský F, Miranda D, Seffouh A, Ortega J, Šimůnek T, Zimčík P, Lovell JF | Journal of materials chemistry. B | 30984399 | J Mater Chem B | 2018 Nov 28 | https://www.ncbi.nlm.nih.gov/pubmed/30984399 |
| Liposomal formulations of photosensitizers. | Ghosh S, Carter KA, Lovell JF | Biomaterials | 31336279 | Biomaterials | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31336279 |
| Membrane Disruption by Very Long Chain Fatty Acids during Necroptosis. | Parisi LR, Sowlati-Hashjin S, Berhane IA, Galster SL, Carter KA, Lovell JF, Chemler SR, Karttunen M, Atilla-Gokcumen GE | ACS chemical biology | 31490656 | ACS Chem Biol | 2019 Oct 18 | https://www.ncbi.nlm.nih.gov/pubmed/31490656 |
| Photoactivation of sulfonated polyplexes enables localized gene silencing by DsiRNA in breast cancer cells. | Puri A, Viard M, Zakrevsky P, Zampino S, Chen A, Isemann C, Alvi S, Clogston J, Chitgupi U, Lovell JF, Shapiro BA | Nanomedicine : nanotechnology, biology, and medicine | 32151748 | Nanomedicine | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32151748 |
| Antibody response of a particle-inducing, liposome vaccine adjuvant admixed with a Pfs230 fragment. | Huang WC, Deng B, Seffouh A, Ortega J, Long CA, Suresh RV, He X, Miura K, Lee SM, Wu Y, Lovell JF | NPJ vaccines | 32218995 | NPJ Vaccines | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32218995 |
| Engineered Nanoparticle Applications for Recombinant Influenza Vaccines. | Sia ZR, Miller MS, Lovell JF | Molecular pharmaceutics | 32787280 | Mol Pharm | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/32787280 |
| Design of Hydrated Porphyrin-Phospholipid Bilayers with Enhanced Magnetic Resonance Contrast. | Shao S, Do TN, Razi A, Chitgupi U, Geng J, Alsop RJ, Dzikovski BG, Rheinstädter MC, Ortega J, Karttunen M, Spernyak JA, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 27739249 | Small | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27739249 |
| Surfactant-stripped naphthalocyanines for multimodal tumor theranostics with upconversion guidance cream. | Zhang Y, Hong H, Sun B, Carter K, Qin Y, Wei W, Wang D, Jeon M, Geng J, Nickles RJ, Chen G, Prasad PN, Kim C, Xia J, Cai W, Lovell JF | Nanoscale | 28247896 | Nanoscale | 2017 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/28247896 |
| Chemophototherapy: An Emerging Treatment Option for Solid Tumors. | Luo D, Carter KA, Miranda D, Lovell JF | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 28105389 | Adv Sci (Weinh) | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28105389 |
| Mechanisms of Light-induced Liposome Permeabilization. | Miranda D, Lovell JF | Bioengineering & translational medicine | 28367505 | Bioeng Transl Med | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28367505 |
| Pharmacokinetics and pharmacodynamics of liposomal chemophototherapy with short drug-light intervals. | Luo D, Carter KA, Molins EAG, Straubinger NL, Geng J, Shao S, Jusko WJ, Straubinger RM, Lovell JF | Journal of controlled release : official journal of the Controlled Release Society | 30684512 | J Control Release | 2019 Mar 10 | https://www.ncbi.nlm.nih.gov/pubmed/30684512 |
| Indocyanine green binds to DOTAP liposomes for enhanced optical properties and tumor photoablation. | Miranda D, Wan C, Kilian HI, Mabrouk MT, Zhou Y, Jin H, Lovell JF | Biomaterials science | 31232421 | Biomater Sci | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31232421 |
| Naphthalocyanines as contrast agents for photoacoustic and multimodal imaging. | Chitgupi U, Lovell JF | Biomedical engineering letters | 30603204 | Biomed Eng Lett | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/30603204 |
| Recent applications of phthalocyanines and naphthalocyanines for imaging and therapy. | Zhang Y, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 27439671 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27439671 |
| Clinical development and potential of photothermal and photodynamic therapies for cancer. | Li X, Lovell JF, Yoon J, Chen X | Nature reviews. Clinical oncology | 32699309 | Nat Rev Clin Oncol | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32699309 |
| Porphyrin-phospholipid liposomes permeabilized by near-infrared light. | Carter KA, Shao S, Hoopes MI, Luo D, Ahsan B, Grigoryants VM, Song W, Huang H, Zhang G, Pandey RK, Geng J, Pfeifer BA, Scholes CP, Ortega J, Karttunen M, Lovell JF | Nature communications | 24699423 | Nat Commun | 2014 Apr 3 | https://www.ncbi.nlm.nih.gov/pubmed/24699423 |
| Reversible Micro- and Nano- Phase Programming of Anthraquinone Thermochromism Using Blended Block Copolymers. | Zhang Y, Lovell JF | Langmuir : the ACS journal of surfaces and colloids | 26626998 | Langmuir | 2015 Dec 22 | https://www.ncbi.nlm.nih.gov/pubmed/26626998 |
| An Engineered Biomimetic MPER Peptide Vaccine Induces Weakly HIV Neutralizing Antibodies in Mice. | Shao S, Huang WC, Lin C, Hicar MD, LaBranche CC, Montefiori DC, Lovell JF | Annals of biomedical engineering | 31832930 | Ann Biomed Eng | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31832930 |
| Nanomedical engineering: shaping future nanomedicines. | Luo D, Carter KA, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 25377691 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2015 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/25377691 |
| Hexamodal imaging with porphyrin-phospholipid-coated upconversion nanoparticles. | Rieffel J, Chen F, Kim J, Chen G, Shao W, Shao S, Chitgupi U, Hernandez R, Graves SA, Nickles RJ, Prasad PN, Kim C, Cai W, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 25640213 | Adv Mater | 2015 Mar 11 | https://www.ncbi.nlm.nih.gov/pubmed/25640213 |
| Doxorubicin encapsulated in stealth liposomes conferred with light-triggered drug release. | Luo D, Carter KA, Razi A, Geng J, Shao S, Giraldo D, Sunar U, Ortega J, Lovell JF | Biomaterials | 26513413 | Biomaterials | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26513413 |
| Sound Out the Deep Colors: Photoacoustic Molecular Imaging at New Depths. | Li M, Nyayapathi N, Kilian HI, Xia J, Lovell JF, Yao J | Molecular imaging | 33336621 | Mol Imaging | 2020 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/33336621 |
| Functionalization of cobalt porphyrin-phospholipid bilayers with his-tagged ligands and antigens. | Shao S, Geng J, Ah Yi H, Gogia S, Neelamegham S, Jacobs A, Lovell JF | Nature chemistry | 25901823 | Nat Chem | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25901823 |
| Pd-porphyrin-cross-linked implantable hydrogels with oxygen-responsive phosphorescence. | Huang H, Song W, Chen G, Reynard JM, Ohulchanskyy TY, Prasad PN, Bright FV, Lovell JF | Advanced healthcare materials | 24259519 | Adv Healthc Mater | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24259519 |
| Ingestible roasted barley for contrast-enhanced photoacoustic imaging in animal and human subjects. | Wang D, Lee DH, Huang H, Vu T, Lim RSA, Nyayapathi N, Chitgupi U, Liu M, Geng J, Xia J, Lovell JF | Biomaterials | 29803105 | Biomaterials | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29803105 |
| Assessing Photosensitizer Targeting Using Meso-Tetra(Carboxyphenyl) Porphyrin. | Chitgupi U, Lovell JF, Rajendiran V | Molecules (Basel, Switzerland) | 29649139 | Molecules | 2018 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/29649139 |
| Blood Interactions, Pharmacokinetics, and Depth-Dependent Ablation of Rat Mammary Tumors with Photoactivatable, Liposomal Doxorubicin. | Carter KA, Luo D, Geng J, Stern ST, Lovell JF | Molecular cancer therapeutics | 30587558 | Mol Cancer Ther | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30587558 |
| A surfactant-stripped cabazitaxel micelle formulation optimized with accelerated storage stability. | Sun B, Jing H, Mabrouk MT, Zhang Y, Jin H, Lovell JF | Pharmaceutical development and technology | 32892678 | Pharm Dev Technol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32892678 |
| Folate-Targeted Nanoliposomal Chemophototherapy. | Chitgupi U, Qin Y, Ghosh S, Quinn B, Carter K, He X, Sunar U, Lovell JF | Pharmaceutics | 37896144 | Pharmaceutics | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37896144 |
| Therapeutic surfactant-stripped frozen micelles. | Zhang Y, Song W, Geng J, Chitgupi U, Unsal H, Federizon J, Rzayev J, Sukumaran DK, Alexandridis P, Lovell JF | Nature communications | 27193558 | Nat Commun | 2016 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/27193558 |
| A Phosphorus Phthalocyanine Formulation with Intense Absorbance at 1000 nm for Deep Optical Imaging. | Zhou Y, Wang D, Zhang Y, Chitgupi U, Geng J, Wang Y, Zhang Y, Cook TR, Xia J, Lovell JF | Theranostics | 27022416 | Theranostics | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27022416 |
| Axial PEGylation of Tin Octabutoxy Naphthalocyanine Extends Blood Circulation for Photoacoustic Vascular Imaging. | Huang H, Wang D, Zhang Y, Zhou Y, Geng J, Chitgupi U, Cook TR, Xia J, Lovell JF | Bioconjugate chemistry | 27259401 | Bioconjug Chem | 2016 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/27259401 |
| Directed vaccination against pneumococcal disease. | Li Y, Hill A, Beitelshees M, Shao S, Lovell JF, Davidson BA, Knight PR 3rd, Hakansson AP, Pfeifer BA, Jones CH | Proceedings of the National Academy of Sciences of the United States of America | 27274071 | Proc Natl Acad Sci U S A | 2016 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/27274071 |
| Sphingomyelin Liposomes Containing Porphyrin-phospholipid for Irinotecan Chemophototherapy. | Carter KA, Luo D, Razi A, Geng J, Shao S, Ortega J, Lovell JF | Theranostics | 27877238 | Theranostics | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27877238 |
| Non-invasive multimodal functional imaging of the intestine with frozen micellar naphthalocyanines. | Zhang Y, Jeon M, Rich LJ, Hong H, Geng J, Zhang Y, Shi S, Barnhart TE, Alexandridis P, Huizinga JD, Seshadri M, Cai W, Kim C, Lovell JF | Nature nanotechnology | 24997526 | Nat Nanotechnol | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/24997526 |
| Dual-color photoacoustic lymph node imaging using nanoformulated naphthalocyanines. | Lee C, Kim J, Zhang Y, Jeon M, Liu C, Song L, Lovell JF, Kim C | Biomaterials | 26408999 | Biomaterials | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26408999 |
| Slit-enabled linear-array photoacoustic tomography with near isotropic spatial resolution in three dimensions. | Wang Y, Wang D, Zhang Y, Geng J, Lovell JF, Xia J | Optics letters | 26696175 | Opt Lett | 2016 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/26696175 |
| Highly-Soluble Cyanine J-aggregates Entrapped by Liposomes for In Vivo Optical Imaging around 930 nm. | Miranda D, Huang H, Kang H, Zhan Y, Wang D, Zhou Y, Geng J, Kilian HI, Stiles W, Razi A, Ortega J, Xia J, Choi HS, Lovell JF | Theranostics | 30809281 | Theranostics | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30809281 |
| Surfactant-Stripped Micelles for NIR-II Photoacoustic Imaging through 12 cm of Breast Tissue and Whole Human Breasts. | Chitgupi U, Nyayapathi N, Kim J, Wang D, Sun B, Li C, Carter K, Huang WC, Kim C, Xia J, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 31414515 | Adv Mater | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31414515 |
| A malaria vaccine adjuvant based on recombinant antigen binding to liposomes. | Huang WC, Deng B, Lin C, Carter KA, Geng J, Razi A, He X, Chitgupi U, Federizon J, Sun B, Long CA, Ortega J, Dutta S, King CR, Miura K, Lee SM, Lovell JF | Nature nanotechnology | 30297818 | Nat Nanotechnol | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30297818 |
| Facile formulation of a long-wavelength cyanine for optical imaging in the second near-infrared window. | Kilian HI , Kang H , Nyayapathi N , Fukuda T , Adluru E , Zhang H , Quinn B , Xia J , Choi HS , Lovell JF | Biomaterials science | 32515752 | Biomater Sci | 2020 Aug 7 | https://www.ncbi.nlm.nih.gov/pubmed/32515752 |
| Immunogenicity of the Lyme disease antigen OspA, particleized by cobalt porphyrin-phospholipid liposomes. | Federizon J, Frye A, Huang WC, Hart TM, He X, Beltran C, Marcinkiewicz AL, Mainprize IL, Wills MKB, Lin YP, Lovell JF | Vaccine | 31727504 | Vaccine | 2020 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/31727504 |
| Antigen Engineering Approaches for Lyme Disease Vaccines. | Federizon J, Lin YP, Lovell JF | Bioconjugate chemistry | 30987418 | Bioconjug Chem | 2019 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/30987418 |
| Surfactant-Stripped Pheophytin Micelles for Multimodal Tumor Imaging and Photodynamic Therapy. | Moukheiber D, Chitgupi U, Carter KA, Luo D, Sun B, Goel S, Ferreira CA, Engle JW, Wang D, Geng J, Zhang Y, Xia J, Cai W, Lovell JF | ACS applied bio materials | 31853516 | ACS Appl Bio Mater | 2019 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/31853516 |
| Trans-illumination intestine projection imaging of intestinal motility in mice. | Wang D, Zhang H, Vu T, Zhan Y, Malhotra A, Wang P, Chitgupi U, Rai A, Zhang S, Wang L, Huizinga JD, Lovell JF, Xia J | Nature communications | 33727562 | Nat Commun | 2021 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/33727562 |
| Mortality and treatment patterns among patients hospitalized with acute cardiovascular conditions during dates of national cardiology meetings. | Jena AB, Prasad V, Goldman DP, Romley J | JAMA internal medicine | 25531231 | JAMA Intern Med | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25531231 |
| Does Pain Lead to Tachycardia? Revisiting the Association Between Self-reported Pain and Heart Rate in a National Sample of Urgent Emergency Department Visits. | Dayoub EJ, Jena AB | Mayo Clinic proceedings | 26250732 | Mayo Clin Proc | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26250732 |
| Association between use of warfarin with common sulfonylureas and serious hypoglycemic events: retrospective cohort analysis. | Romley JA, Gong C, Jena AB, Goldman DP, Williams B, Peters A | BMJ (Clinical research ed.) | 26643108 | BMJ | 2015 Dec 7 | https://www.ncbi.nlm.nih.gov/pubmed/26643108 |
| Access, quality, and costs of care at physician owned hospitals in the United States: observational study. | Blumenthal DM, Orav EJ, Jena AB, Dudzinski DM, Le ST, Jha AK | BMJ (Clinical research ed.) | 26333819 | BMJ | 2015 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/26333819 |
| The Trade-off Between Speed and Safety in Drug Approvals. | Jena AB, Zhang J, Lakdawalla DN | JAMA oncology | 27684643 | JAMA Oncol | 2017 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/27684643 |
| Early death after discharge from emergency departments: analysis of national US insurance claims data. | Obermeyer Z, Cohn B, Wilson M, Jena AB, Cutler DM | BMJ (Clinical research ed.) | 28148486 | BMJ | 2017 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/28148486 |
| Utilization of Telemedicine Among Rural Medicare Beneficiaries. | Mehrotra A, Jena AB, Busch AB, Souza J, Uscher-Pines L, Landon BE | JAMA | 27163991 | JAMA | 2016 May 10 | https://www.ncbi.nlm.nih.gov/pubmed/27163991 |
| Screening Mammography for Free: Impact of Eliminating Cost Sharing on Cancer Screening Rates. | Jena AB, Huang J, Fireman B, Fung V, Gazelle S, Landrum MB, Chernew M, Newhouse JP, Hsu J | Health services research | 26990550 | Health Serv Res | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/26990550 |
| Medical professional liability risk among US cardiologists. | Mangalmurti S, Seabury SA, Chandra A, Lakdawalla D, Oetgen WJ, Jena AB | American heart journal | 24766979 | Am Heart J | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/24766979 |
| Outcomes after out-of-hospital cardiac arrest treated by basic vs advanced life support. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | JAMA internal medicine | 25419698 | JAMA Intern Med | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25419698 |
| Turning evidence into practice under payment reform: the new frontier of translational science. | Jena AB, Stevens W, McWilliams JM | Journal of general internal medicine | 25092013 | J Gen Intern Med | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25092013 |
| Association Between Treatment by Locum Tenens Internal Medicine Physicians and 30-Day Mortality Among Hospitalized Medicare Beneficiaries. | Blumenthal DM, Olenski AR, Tsugawa Y, Jena AB | JAMA | 29209722 | JAMA | 2017 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/29209722 |
| The need for speed: observational study of physician driving behaviors. | Zimerman A, Worsham C, Woo J, Jena AB | BMJ (Clinical research ed.) | 31852682 | BMJ | 2019 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/31852682 |
| Factors Associated with Psychiatrist Opt-out from US Medicare: an Observational Study. | Yu J, Jena AB, Mandic PK, Golberstein E | Journal of general internal medicine | 31420824 | J Gen Intern Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31420824 |
| Patient and provider-level factors associated with changes in utilization of treatments in response to evidence on ineffectiveness or harm. | Smith LB, Desai NR, Dowd B, Everhart A, Herrin J, Higuera L, Jeffery MM, Jena AB, Ross JS, Shah ND, Karaca-Mandic P | International journal of health economics and management | 32350680 | Int J Health Econ Manag | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32350680 |
| Gender differences in how scientists present the importance of their research: observational study. | Lerchenmueller MJ, Sorenson O, Jena AB | BMJ (Clinical research ed.) | 31843745 | BMJ | 2019 Dec 16 | https://www.ncbi.nlm.nih.gov/pubmed/31843745 |
| Sex Differences in Time Spent on Household Activities and Care of Children Among US Physicians, 2003-2016. | Ly DP, Jena AB | Mayo Clinic proceedings | 29673711 | Mayo Clin Proc | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/29673711 |
| Sex Differences in Physician Salary in US Public Medical Schools. | Jena AB, Olenski AR, Blumenthal DM | JAMA internal medicine | 27400435 | JAMA Intern Med | 2016 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/27400435 |
| Sex Differences in Faculty Rank Among Academic Cardiologists in the United States. | Blumenthal DM, Olenski AR, Yeh RW, DeFaria Yeh D, Sarma A, Stefanescu Schmidt AC, Wood MJ, Jena AB | Circulation | 28153987 | Circulation | 2017 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/28153987 |
| Variation in Physician Spending and Association With Patient Outcomes. | Tsugawa Y, Jha AK, Newhouse JP, Zaslavsky AM, Jena AB | JAMA internal medicine | 28288254 | JAMA Intern Med | 2017 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/28288254 |
| Outcomes-Based Pricing as a Tool to Ensure Access to Novel but Expensive Biopharmaceuticals. | Blumenthal DM, Goldman DP, Jena AB | Annals of internal medicine | 27951598 | Ann Intern Med | 2017 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/27951598 |
| Distribution of Prescription Opioid Use Among Privately Insured Adults Without Cancer: United States, 2001 to 2013. | Sun EC, Jena AB | Annals of internal medicine | 28892817 | Ann Intern Med | 2017 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/28892817 |
| Golf habits among physicians and surgeons: observational cohort study. | Koplewitz G, Blumenthal DM, Gross N, Hicks T, Jena AB | BMJ (Clinical research ed.) | 30530803 | BMJ | 2018 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/30530803 |
| The Impact of the US Food and Drug Administration Chlorofluorocarbon Ban on Out-of-pocket Costs and Use of Albuterol Inhalers Among Individuals With Asthma. | Jena AB, Ho O, Goldman DP, Karaca-Mandic P | JAMA internal medicine | 25962128 | JAMA Intern Med | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25962128 |
| Long-term effects of the 2003 ACGME resident duty hour reform on hospital mortality. | Jena AB, Prasad V, Romley JA | Mayo Clinic proceedings | 24996240 | Mayo Clin Proc | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24996240 |
| Hospital Prescribing of Opioids to Medicare Beneficiaries. | Jena AB, Goldman D, Karaca-Mandic P | JAMA internal medicine | 27294595 | JAMA Intern Med | 2016 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/27294595 |
| Birth Month and Influenza Vaccination in Children. | Worsham C, Woo J, Jena AB | The New England journal of medicine | 32640138 | N Engl J Med | 2020 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/32640138 |
| Behavioral Heuristics in Coronary-Artery Bypass Graft Surgery. | Olenski AR, Zimerman A, Coussens S, Jena AB | The New England journal of medicine | 32074429 | N Engl J Med | 2020 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/32074429 |
| Medical malpractice reform: noneconomic damages caps reduced payments 15 percent, with varied effects by specialty. | Seabury SA, Helland E, Jena AB | Health affairs (Project Hope) | 25339633 | Health Aff (Millwood) | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25339633 |
| Authorship Inflation in Medical Publications. | Tilak G, Prasad V, Jena AB | Inquiry : a journal of medical care organization, provision and financing | 26228035 | Inquiry | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26228035 |
| Do heads of government age more quickly? Observational study comparing mortality between elected leaders and runners-up in national elections of 17 countries. | Olenski AR, Abola MV, Jena AB | BMJ (Clinical research ed.) | 26666894 | BMJ | 2015 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/26666894 |
| Association of Grit Scores With Treatment Adherence and Biomarkers in Patients With Type 2 Diabetes. | Peña PA, Pérez-Díaz I, Pulido-Ayala AK, Osorio-Landa HK, López-Navarro JM, Duckworth AL, Jena AB | JAMA network open | 31517961 | JAMA Netw Open | 2019 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/31517961 |
| Trends in the Price per Median and Mean Life-Year Gained Among Newly Approved Cancer Therapies 1995 to 2017. | Chen AJ, Hu X, Conti RM, Jena AB, Goldman DP | Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research | 31806195 | Value Health | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31806195 |
| Association between treatment toxicity and outcomes in oncology clinical trials. | Abola MV, Prasad V, Jena AB | Annals of oncology : official journal of the European Society for Medical Oncology | 25193993 | Ann Oncol | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25193993 |
| Does the declining lethality of gunshot injuries mask a rising epidemic of gun violence in the United States? | Jena AB, Sun EC, Prasad V | Journal of general internal medicine | 24452421 | J Gen Intern Med | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24452421 |
| Reducing Diagnostic Errors--Why Now? | Khullar D, Jha AK, Jena AB | The New England journal of medicine | 26397948 | N Engl J Med | 2015 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/26397948 |
| Patient mortality after surgery on the surgeon's birthday: observational study. | Kato H, Jena AB, Tsugawa Y | BMJ (Clinical research ed.) | 34913872 | BMJ | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/34913872 |
| Mortality among high-risk patients with acute myocardial infarction admitted to U.S. teaching-intensive hospitals in July: a retrospective observational study. | Jena AB, Sun EC, Romley JA | Circulation | 24152859 | Circulation | 2013 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/24152859 |
| Careful use of science to advance the debate on the UK Cancer Drugs Fund. | Lakdawalla DN, Jena AB, Doctor JN | JAMA | 24381964 | JAMA | 2014 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/24381964 |
| Exposing physicians to reduced residency work hours did not adversely affect patient outcomes after residency. | Jena AB, Schoemaker L, Bhattacharya J | Health affairs (Project Hope) | 25288430 | Health Aff (Millwood) | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25288430 |
| The Peltzman effect and compensatory markers in medicine. | Prasad V, Jena AB | Healthcare (Amsterdam, Netherlands) | 25396116 | Healthc (Amst) | 2014 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/25396116 |
| The declining demand for hospital care as a rationale for duty hour reform. | Jena AB, DePasse JW, Prasad V | Journal of general internal medicine | 24866469 | J Gen Intern Med | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24866469 |
| Physician spending and subsequent risk of malpractice claims: observational study. | Jena AB, Schoemaker L, Bhattacharya J, Seabury SA | BMJ (Clinical research ed.) | 26538498 | BMJ | 2015 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/26538498 |
| Chronic Disease Prevalence and Healthy Lifestyle Behaviors Among US Health Care Professionals. | Dayoub E, Jena AB | Mayo Clinic proceedings | 26422242 | Mayo Clin Proc | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26422242 |
| Regression discontinuity designs in healthcare research. | Venkataramani AS, Bor J, Jena AB | BMJ (Clinical research ed.) | 26977086 | BMJ | 2016 Mar 14 | https://www.ncbi.nlm.nih.gov/pubmed/26977086 |
| Reducing prognostic errors: a new imperative in quality healthcare. | Khullar D, Jena AB | BMJ (Clinical research ed.) | 26993146 | BMJ | 2016 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/26993146 |
| Myosin forces elicit an F-actin structural landscape that mediates mechanosensitive protein recognition. | Carl AG, Reynolds MJ, Gurel PS, Phua DYZ, Sun X, Mei L, Hamilton K, Takagi Y, Noble AJ, Sellers JR, Alushin GM | bioRxiv : the preprint server for biology | 39185238 | bioRxiv | 2024 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/39185238 |
| Human β-Tubulin Isotypes Can Regulate Microtubule Protofilament Number and Stability. | Ti SC, Alushin GM, Kapoor TM | Developmental cell | 30245156 | Dev Cell | 2018 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/30245156 |
| Molecular mechanism for direct actin force-sensing by α-catenin. | Mei L, Espinosa de Los Reyes S, Reynolds MJ, Leicher R, Liu S, Alushin GM | eLife | 32969337 | Elife | 2020 Sep 24 | https://www.ncbi.nlm.nih.gov/pubmed/32969337 |
| The Structural Basis of Actin Organization by Vinculin and Metavinculin. | Kim LY, Thompson PM, Lee HT, Pershad M, Campbell SL, Alushin GM | Journal of molecular biology | 26493222 | J Mol Biol | 2016 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/26493222 |
| Retraction Notice to: FMN2 Makes Perinuclear Actin to Protect Nuclei during Confined Migration and Promote Metastasis. | Skau CT, Fischer RS, Gurel P, Thiam HR, Tubbs A, Baird MA, Davidson MW, Piel M, Alushin GM, Nussenzweig A, Steeg PS, Waterman CM | Cell | 29625058 | Cell | 2018 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/29625058 |
| FMN2 Makes Perinuclear Actin to Protect Nuclei during Confined Migration and Promote Metastasis. | Skau CT, Fischer RS, Gurel P, Thiam HR, Tubbs A, Baird MA, Davidson MW, Piel M, Alushin GM, Nussenzweig A, Steeg PS, Waterman CM | Cell | 27839864 | Cell | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27839864 |
| Mechanosensing through Direct Binding of Tensed F-Actin by LIM Domains. | Sun X, Phua DYZ, Axiotakis L Jr, Smith MA, Blankman E, Gong R, Cail RC, Espinosa de Los Reyes S, Beckerle MC, Waterman CM, Alushin GM | Developmental cell | 33058779 | Dev Cell | 2020 Nov 23 | https://www.ncbi.nlm.nih.gov/pubmed/33058779 |
| Structural mechanism for bidirectional actin cross-linking by T-plastin. | Mei L, Reynolds MJ, Garbett D, Gong R, Meyer T, Alushin GM | Proceedings of the National Academy of Sciences of the United States of America | 36067297 | Proc Natl Acad Sci U S A | 2022 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/36067297 |
| Structural basis for tunable control of actin dynamics by myosin-15 in mechanosensory stereocilia. | Gong R, Jiang F, Moreland ZG, Reynolds MJ, de Los Reyes SE, Gurel P, Shams A, Heidings JB, Bowl MR, Bird JE, Alushin GM | Science advances | 35857845 | Sci Adv | 2022 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/35857845 |
| Controllable molecular motors engineered from myosin and RNA. | Omabegho T, Gurel PS, Cheng CY, Kim LY, Ruijgrok PV, Das R, Alushin GM, Bryant Z | Nature nanotechnology | 29109539 | Nat Nanotechnol | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29109539 |
| The Mendelian disorders of the epigenetic machinery. | Bjornsson HT | Genome research | 26430157 | Genome Res | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26430157 |
| Molecularly confirmed Kabuki (Niikawa-Kuroki) syndrome patients demonstrate a specific cognitive profile with extensive visuospatial abnormalities. | Harris J, Mahone EM, Bjornsson HT | Journal of intellectual disability research : JIDR | 30767315 | J Intellect Disabil Res | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30767315 |
| Missense variants in the chromatin remodeler CHD1 are associated with neurodevelopmental disability. | Pilarowski GO, Vernon HJ, Applegate CD, Boukas L, Cho MT, Gurnett CA, Benke PJ, Beaver E, Heeley JM, Medne L, Krantz ID, Azage M, Niyazov D, Henderson LB, Wentzensen IM, Baskin B, Sacoto MJG, Bowman GD, Bjornsson HT | Journal of medical genetics | 28866611 | J Med Genet | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28866611 |
| Embryonic loss of human females with partial trisomy 19 identifies region critical for the single active X. | Migeon BR, Beer MA, Bjornsson HT | PloS one | 28403217 | PLoS One | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28403217 |
| Clinical epigenetics: a primer for the practitioner. | Aygun D, Bjornsson HT | Developmental medicine and child neurology | 31749156 | Dev Med Child Neurol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31749156 |
| Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome. | Carosso GA, Boukas L, Augustin JJ, Nguyen HN, Winer BL, Cannon GH, Robertson JD, Zhang L, Hansen KD, Goff LA, Bjornsson HT | JCI insight | 31465303 | JCI Insight | 2019 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/31465303 |
| SMYD5 is a regulator of the mild hypothermia response. | Rafnsdottir S, Jang K, Halldorsdottir ST, Vinod M, Tomasdottir A, Möller K, Halldorsdottir K, Reynisdottir T, Atladottir LH, Allison KE, Ostacolo K, He J, Zhang L, Northington FJ, Magnusdottir E, Chavez-Valdez R, Anderson KJ, Bjornsson HT | Cell reports | 39083378 | Cell Rep | 2024 Aug 27 | https://www.ncbi.nlm.nih.gov/pubmed/39083378 |
| Recommendations for the integration of genomics into clinical practice. | Bowdin S, Gilbert A, Bedoukian E, Carew C, Adam MP, Belmont J, Bernhardt B, Biesecker L, Bjornsson HT, Blitzer M, D'Alessandro LC, Deardorff MA, Demmer L, Elliott A, Feldman GL, Glass IA, Herman G, Hindorff L, Hisama F, Hudgins L, Innes AM, Jackson L, Jarvik G, Kim R, Korf B, Ledbetter DH, Li M, Liston E, Marshall C, Medne L, Meyn MS, Monfared N, Morton C, Mulvihill JJ, Plon SE, Rehm H, Roberts A, Shuman C, Spinner NB, Stavropoulos DJ, Valverde K, Waggoner DJ, Wilkens A, Cohn RD, Krantz ID | Genetics in medicine : official journal of the American College of Medical Genetics | 27171546 | Genet Med | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27171546 |
| Histone deacetylase inhibition rescues structural and functional brain deficits in a mouse model of Kabuki syndrome. | Bjornsson HT, Benjamin JS, Zhang L, Weissman J, Gerber EE, Chen YC, Vaurio RG, Potter MC, Hansen KD, Dietz HC | Science translational medicine | 25273096 | Sci Transl Med | 2014 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/25273096 |
| Mendelian disorders of the epigenetic machinery: tipping the balance of chromatin states. | Fahrner JA, Bjornsson HT | Annual review of genomics and human genetics | 25184531 | Annu Rev Genomics Hum Genet | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25184531 |
| Abnormalities of the DNA methylation mark and its machinery: an emerging cause of neurologic dysfunction. | Weissman J, Naidu S, Bjornsson HT | Seminars in neurology | 25192503 | Semin Neurol | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25192503 |
| Patients with a Kabuki syndrome phenotype demonstrate DNA methylation abnormalities. | Sobreira N, Brucato M, Zhang L, Ladd-Acosta C, Ongaco C, Romm J, Doheny KF, Mingroni-Netto RC, Bertola D, Kim CA, Perez AB, Melaragno MI, Valle D, Meloni VA, Bjornsson HT | European journal of human genetics : EJHG | 29255178 | Eur J Hum Genet | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29255178 |
| A ketogenic diet rescues hippocampal memory defects in a mouse model of Kabuki syndrome. | Benjamin JS, Pilarowski GO, Carosso GA, Zhang L, Huso DL, Goff LA, Vernon HJ, Hansen KD, Bjornsson HT | Proceedings of the National Academy of Sciences of the United States of America | 27999180 | Proc Natl Acad Sci U S A | 2017 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/27999180 |
| [Playing god - progress in genomic medicine]. | Bjornsson HT | Laeknabladid | 30806627 | Laeknabladid | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30806627 |
| Precocious chondrocyte differentiation disrupts skeletal growth in Kabuki syndrome mice. | Fahrner JA, Lin WY, Riddle RC, Boukas L, DeLeon VB, Chopra S, Lad SE, Luperchio TR, Hansen KD, Bjornsson HT | JCI insight | 31557133 | JCI Insight | 2019 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/31557133 |
| Apparent Acetaminophen Toxicity in a Patient with Transaldolase Deficiency. | Lee-Barber J, English TE, Britton JF, Sobreira N, Goldstein J, Valle D, Bjornsson HT | JIMD reports | 29923087 | JIMD Rep | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/29923087 |
| Mendelian disorders of the epigenetic machinery: postnatal malleability and therapeutic prospects. | Fahrner JA, Bjornsson HT | Human molecular genetics | 31595951 | Hum Mol Genet | 2019 Nov 21 | https://www.ncbi.nlm.nih.gov/pubmed/31595951 |
| Abnormal Peyer patch development and B-cell gut homing drive IgA deficiency in Kabuki syndrome. | Pilarowski GO, Cazares T, Zhang L, Benjamin JS, Liu K, Jagannathan S, Mousa N, Kasten J, Barski A, Lindsley AW, Bjornsson HT | The Journal of allergy and clinical immunology | 31816409 | J Allergy Clin Immunol | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31816409 |
| Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1. | Gao CW, Lin W, Riddle RC, Chopra S, Kim J, Boukas L, Hansen KD, Björnsson HT, Fahrner JA | PLoS genetics | 38857303 | PLoS Genet | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38857303 |
| Inhibition of KDM1A activity restores adult neurogenesis and improves hippocampal memory in a mouse model of Kabuki syndrome. | Zhang L, Pilarowski G, Pich EM, Nakatani A, Dunlop J, Baba R, Matsuda S, Daini M, Hattori Y, Matsumoto S, Ito M, Kimura H, Bjornsson HT | Molecular therapy. Methods & clinical development | 33738331 | Mol Ther Methods Clin Dev | 2021 Mar 12 | https://www.ncbi.nlm.nih.gov/pubmed/33738331 |
| Structure of the human epithelial sodium channel by cryo-electron microscopy. | Noreng S, Bharadwaj A, Posert R, Yoshioka C, Baconguis I | eLife | 30251954 | Elife | 2018 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/30251954 |
| Light-coupled cryo-plunger for time-resolved cryo-EM. | Yoder N, Jalali-Yazdi F, Noreng S, Houser A, Baconguis I, Gouaux E | Journal of structural biology | 32950604 | J Struct Biol | 2020 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/32950604 |
| Molecular principles of assembly, activation, and inhibition in epithelial sodium channel. | Noreng S, Posert R, Bharadwaj A, Houser A, Baconguis I | eLife | 32729833 | Elife | 2020 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/32729833 |
| Antagonistic regulation of mRNA expression and splicing by CELF and MBNL proteins. | Wang ET, Ward AJ, Cherone JM, Giudice J, Wang TT, Treacy DJ, Lambert NJ, Freese P, Saxena T, Cooper TA, Burge CB | Genome research | 25883322 | Genome Res | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/25883322 |
| Quantitative visualization of alternative exon expression from RNA-seq data. | Katz Y, Wang ET, Silterra J, Schwartz S, Wong B, Thorvaldsdóttir H, Robinson JT, Mesirov JP, Airoldi EM, Burge CB | Bioinformatics (Oxford, England) | 25617416 | Bioinformatics | 2015 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/25617416 |
| Genomic analysis of RNA localization. | Taliaferro JM, Wang ET, Burge CB | RNA biology | 25483039 | RNA Biol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25483039 |
| Barcoded nanoparticles for high throughput in vivo discovery of targeted therapeutics. | Dahlman JE, Kauffman KJ, Xing Y, Shaw TE, Mir FF, Dlott CC, Langer R, Anderson DG, Wang ET | Proceedings of the National Academy of Sciences of the United States of America | 28167778 | Proc Natl Acad Sci U S A | 2017 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/28167778 |
| An engineered RNA binding protein with improved splicing regulation. | Hale MA, Richardson JI, Day RC, McConnell OL, Arboleda J, Wang ET, Berglund JA | Nucleic acids research | 29309648 | Nucleic Acids Res | 2018 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/29309648 |
| Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development. | Giudice J, Xia Z, Wang ET, Scavuzzo MA, Ward AJ, Kalsotra A, Wang W, Wehrens XH, Burge CB, Li W, Cooper TA | Nature communications | 24752171 | Nat Commun | 2014 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
| Transcriptome alterations in myotonic dystrophy skeletal muscle and heart. | Wang ET, Treacy D, Eichinger K, Struck A, Estabrook J, Olafson H, Wang TT, Bhatt K, Westbrook T, Sedehizadeh S, Ward A, Day J, Brook D, Berglund JA, Cooper T, Housman D, Thornton C, Burge C | Human molecular genetics | 30561649 | Hum Mol Genet | 2019 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/30561649 |
| Impeding Transcription of Expanded Microsatellite Repeats by Deactivated Cas9. | Pinto BS, Saxena T, Oliveira R, Méndez-Gómez HR, Cleary JD, Denes LT, McConnell O, Arboleda J, Xia G, Swanson MS, Wang ET | Molecular cell | 29056323 | Mol Cell | 2017 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/29056323 |
| A Requirement for Mena, an Actin Regulator, in Local mRNA Translation in Developing Neurons. | Vidaki M, Drees F, Saxena T, Lanslots E, Taliaferro MJ, Tatarakis A, Burge CB, Wang ET, Gertler FB | Neuron | 28735747 | Neuron | 2017 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/28735747 |
| Skeletal muscle degenerative diseases and strategies for therapeutic muscle repair. | Tabebordbar M, Wang ET, Wagers AJ | Annual review of pathology | 23121053 | Annu Rev Pathol | 2013 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/23121053 |
| Conservation of context-dependent splicing activity in distant Muscleblind homologs. | Oddo JC, Saxena T, McConnell OL, Berglund JA, Wang ET | Nucleic acids research | 27557707 | Nucleic Acids Res | 2016 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/27557707 |
| Myotonic dystrophy: approach to therapy. | Thornton CA, Wang E, Carrell EM | Current opinion in genetics & development | 28376341 | Curr Opin Genet Dev | 2017 Jun | https://www.ncbi.nlm.nih.gov/pubmed/28376341 |
| A Defective mRNA Cleavage and Polyadenylation Complex Facilitates Expansions of Transcribed (GAA)(n) Repeats Associated with Friedreich's Ataxia. | McGinty RJ, Puleo F, Aksenova AY, Hisey JA, Shishkin AA, Pearson EL, Wang ET, Housman DE, Moore C, Mirkin SM | Cell reports | 28877480 | Cell Rep | 2017 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/28877480 |
| Transcriptome-wide organization of subcellular microenvironments revealed by ATLAS-Seq. | Adekunle DA, Wang ET | Nucleic acids research | 32421779 | Nucleic Acids Res | 2020 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/32421779 |
| Antisense transcription of the myotonic dystrophy locus yields low-abundant RNAs with and without (CAG)n repeat. | Gudde AEEG, van Heeringen SJ, de Oude AI, van Kessel IDG, Estabrook J, Wang ET, Wieringa B, Wansink DG | RNA biology | 28102759 | RNA Biol | 2017 Oct 3 | https://www.ncbi.nlm.nih.gov/pubmed/28102759 |
| Dose-Dependent Regulation of Alternative Splicing by MBNL Proteins Reveals Biomarkers for Myotonic Dystrophy. | Wagner SD, Struck AJ, Gupta R, Farnsworth DR, Mahady AE, Eichinger K, Thornton CA, Wang ET, Berglund JA | PLoS genetics | 27681373 | PLoS Genet | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27681373 |
| Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy. | Freyermuth F, Rau F, Kokunai Y, Linke T, Sellier C, Nakamori M, Kino Y, Arandel L, Jollet A, Thibault C, Philipps M, Vicaire S, Jost B, Udd B, Day JW, Duboc D, Wahbi K, Matsumura T, Fujimura H, Mochizuki H, Deryckere F, Kimura T, Nukina N, Ishiura S, Lacroix V, Campan-Fournier A, Navratil V, Chautard E, Auboeuf D, Horie M, Imoto K, Lee KY, Swanson MS, de Munain AL, Inada S, Itoh H, Nakazawa K, Ashihara T, Wang E, Zimmer T, Furling D, Takahashi MP, Charlet-Berguerand N | Nature communications | 27063795 | Nat Commun | 2016 Apr 11 | https://www.ncbi.nlm.nih.gov/pubmed/27063795 |
| Dysregulation of mRNA Localization and Translation in Genetic Disease. | Wang ET, Taliaferro JM, Lee JA, Sudhakaran IP, Rossoll W, Gross C, Moss KR, Bassell GJ | The Journal of neuroscience : the official journal of the Society for Neuroscience | 27911744 | J Neurosci | 2016 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/27911744 |
| Disrupted prenatal RNA processing and myogenesis in congenital myotonic dystrophy. | Thomas JD, Sznajder ŁJ, Bardhi O, Aslam FN, Anastasiadis ZP, Scotti MM, Nishino I, Nakamori M, Wang ET, Swanson MS | Genes & development | 28698297 | Genes Dev | 2017 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/28698297 |
| A flow cytometry-based screen identifies MBNL1 modulators that rescue splicing defects in myotonic dystrophy type I. | Zhang F, Bodycombe NE, Haskell KM, Sun YL, Wang ET, Morris CA, Jones LH, Wood LD, Pletcher MT | Human molecular genetics | 28535287 | Hum Mol Genet | 2017 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/28535287 |
| Myotonic dystrophy: disease repeat range, penetrance, age of onset, and relationship between repeat size and phenotypes. | Yum K, Wang ET, Kalsotra A | Current opinion in genetics & development | 28213156 | Curr Opin Genet Dev | 2017 Jun | https://www.ncbi.nlm.nih.gov/pubmed/28213156 |
| Distal Alternative Last Exons Localize mRNAs to Neural Projections. | Taliaferro JM, Vidaki M, Oliveira R, Olson S, Zhan L, Saxena T, Wang ET, Graveley BR, Gertler FB, Swanson MS, Burge CB | Molecular cell | 26907613 | Mol Cell | 2016 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/26907613 |
| Aberrant Myokine Signaling in Congenital Myotonic Dystrophy. | Nakamori M, Hamanaka K, Thomas JD, Wang ET, Hayashi YK, Takahashi MP, Swanson MS, Nishino I, Mochizuki H | Cell reports | 29091763 | Cell Rep | 2017 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/29091763 |
| The skeletal muscle circadian clock regulates titin splicing through RBM20. | Riley LA, Zhang X, Douglas CM, Mijares JM, Hammers DW, Wolff CA, Wood NB, Olafson HR, Du P, Labeit S, Previs MJ, Wang ET, Esser KA | eLife | 36047761 | Elife | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/36047761 |
| Stable Host Gene Expression in the Gut of Adult Drosophila melanogaster with Different Bacterial Mono-Associations. | Elya C, Zhang V, Ludington WB, Eisen MB | PloS one | 27898741 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27898741 |
| Microbial Quantity Impacts Drosophila Nutrition, Development, and Lifespan. | Keebaugh ES, Yamada R, Obadia B, Ludington WB, Ja WW | iScience | 30240744 | iScience | 2018 Jun 29 | https://www.ncbi.nlm.nih.gov/pubmed/30240744 |
| Bacterial interspecies interactions modulate pH-mediated antibiotic tolerance. | Aranda-Díaz A, Obadia B, Dodge R, Thomsen T, Hallberg ZF, Güvener ZT, Ludington WB, Huang KC | eLife | 31995029 | Elife | 2020 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/31995029 |
| Cellular and molecular organization of the Drosophila foregut. | Zhu H, Ludington WB, Spradling AC | Proceedings of the National Academy of Sciences of the United States of America | 38442150 | Proc Natl Acad Sci U S A | 2024 Mar 12 | https://www.ncbi.nlm.nih.gov/pubmed/38442150 |
| Fast Colony Forming Unit Counting in 96-Well Plate Format Applied to the Drosophila Microbiome. | Dodge R, Ludington WB | Journal of visualized experiments : JoVE | 36715413 | J Vis Exp | 2023 Jan 13 | https://www.ncbi.nlm.nih.gov/pubmed/36715413 |
| Gut microbiome dysbiosis is associated with host genetics in the Norwegian Lundehund. | Melis C, Billing AM, Wold PA, Ludington WB | Frontiers in microbiology | 37405168 | Front Microbiol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37405168 |
| Diet influences host-microbiota associations in Drosophila. | Obadia B, Keebaugh ES, Yamada R, Ludington WB, Ja WW | Proceedings of the National Academy of Sciences of the United States of America | 29735646 | Proc Natl Acad Sci U S A | 2018 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/29735646 |
| Probabilistic Invasion Underlies Natural Gut Microbiome Stability. | Obadia B, Güvener ZT, Zhang V, Ceja-Navarro JA, Brodie EL, Ja WW, Ludington WB | Current biology : CB | 28625783 | Curr Biol | 2017 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/28625783 |
| Maternal IgG and IgA Antibodies Dampen Mucosal T Helper Cell Responses in Early Life. | Koch MA, Reiner GL, Lugo KA, Kreuk LS, Stanbery AG, Ansaldo E, Seher TD, Ludington WB, Barton GM | Cell | 27153495 | Cell | 2016 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/27153495 |
| Drosophila as a model for the gut microbiome. | Ludington WB, Ja WW | PLoS pathogens | 32324814 | PLoS Pathog | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32324814 |
| Commensal acidification of specific gut regions produces a protective priority effect against enteropathogenic bacterial infection. | Yang JL, Zhu H, Sadh P, Aumiller K, Guvener ZT, Ludington WB | Applied and environmental microbiology | 40801536 | Appl Environ Microbiol | 2025 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/40801536 |
| Stochastic microbiome assembly depends on context. | Jones EW, Carlson JM, Sivak DA, Ludington WB | Proceedings of the National Academy of Sciences of the United States of America | 35135881 | Proc Natl Acad Sci U S A | 2022 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/35135881 |
| A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota. | Dodge R, Jones EW, Zhu H, Obadia B, Martinez DJ, Wang C, Aranda-Díaz A, Aumiller K, Liu Z, Voltolini M, Brodie EL, Huang KC, Carlson JM, Sivak DA, Spradling AC, Ludington WB | Nature communications | 36944617 | Nat Commun | 2023 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/36944617 |
| A chemically-defined growth medium to support Lactobacillus-Acetobacter sp. community analysis. | Aumiller K, Scheffler R, Stevens ET, Güvener ZT, Tung E, Grimaldo AB, Carlson HK, Deutschbauer AM, Taga ME, Marco ML, Ludington WB | PloS one | 37824485 | PLoS One | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37824485 |
| Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater. | Ludington WB, Seher TD, Applegate O, Li X, Kliegman JI, Langelier C, Atwill ER, Harter T, DeRisi JL | PloS one | 28384184 | PLoS One | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28384184 |
| Microbiome interactions shape host fitness. | Gould AL, Zhang V, Lamberti L, Jones EW, Obadia B, Korasidis N, Gavryushkin A, Carlson JM, Beerenwinkel N, Ludington WB | Proceedings of the National Academy of Sciences of the United States of America | 30510004 | Proc Natl Acad Sci U S A | 2018 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/30510004 |
| Bellymount enables longitudinal, intravital imaging of abdominal organs and the gut microbiota in adult Drosophila. | Koyama LAJ, Aranda-Díaz A, Su YH, Balachandra S, Martin JL, Ludington WB, Huang KC, O'Brien LE | PLoS biology | 31986129 | PLoS Biol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31986129 |
| Genetic Rescue of the Highly Inbred Norwegian Lundehund. | Melis C, Pertoldi C, Ludington WB, Beuchat C, Qvigstad G, Stronen AV | Genes | 35052503 | Genes (Basel) | 2022 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/35052503 |
| Microbiome-by-ethanol interactions impact Drosophila melanogaster fitness, physiology, and behavior. | Chandler JA, Innocent LV, Martinez DJ, Huang IL, Yang JL, Eisen MB, Ludington WB | iScience | 35313693 | iScience | 2022 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/35313693 |
| Cluster partitions and fitness landscapes of the Drosophila fly microbiome. | Eble H, Joswig M, Lamberti L, Ludington WB | Journal of mathematical biology | 31101975 | J Math Biol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31101975 |
| Master regulators of biological systems in higher dimensions. | Eble H, Joswig M, Lamberti L, Ludington WB | Proceedings of the National Academy of Sciences of the United States of America | 38096409 | Proc Natl Acad Sci U S A | 2023 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/38096409 |
| Manipulation of apoptosis and necroptosis signaling by herpesviruses. | Guo H, Kaiser WJ, Mocarski ES | Medical microbiology and immunology | 25828583 | Med Microbiol Immunol | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/25828583 |
| TNFR1-dependent cell death drives inflammation in Sharpin-deficient mice. | Rickard JA, Anderton H, Etemadi N, Nachbur U, Darding M, Peltzer N, Lalaoui N, Lawlor KE, Vanyai H, Hall C, Bankovacki A, Gangoda L, Wong WW, Corbin J, Huang C, Mocarski ES, Murphy JM, Alexander WS, Voss AK, Vaux DL, Kaiser WJ, Walczak H, Silke J | eLife | 25443632 | Elife | 2014 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/25443632 |
| Molecular crosstalk between apoptosis, necroptosis, and survival signaling. | Vanden Berghe T, Kaiser WJ, Bertrand MJ, Vandenabeele P | Molecular & cellular oncology | 27308513 | Mol Cell Oncol | 2015 Oct-Dec | https://www.ncbi.nlm.nih.gov/pubmed/27308513 |
| RIP1 suppresses innate immune necrotic as well as apoptotic cell death during mammalian parturition. | Kaiser WJ, Daley-Bauer LP, Thapa RJ, Mandal P, Berger SB, Huang C, Sundararajan A, Guo H, Roback L, Speck SH, Bertin J, Gough PJ, Balachandran S, Mocarski ES | Proceedings of the National Academy of Sciences of the United States of America | 24821786 | Proc Natl Acad Sci U S A | 2014 May 27 | https://www.ncbi.nlm.nih.gov/pubmed/24821786 |
| Toll-like receptor 3-mediated necrosis via TRIF, RIP3, and MLKL. | Kaiser WJ, Sridharan H, Huang C, Mandal P, Upton JW, Gough PJ, Sehon CA, Marquis RW, Bertin J, Mocarski ES | The Journal of biological chemistry | 24019532 | J Biol Chem | 2013 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/24019532 |
| True grit: programmed necrosis in antiviral host defense, inflammation, and immunogenicity. | Mocarski ES, Kaiser WJ, Livingston-Rosanoff D, Upton JW, Daley-Bauer LP | Journal of immunology (Baltimore, Md. : 1950) | 24563506 | J Immunol | 2014 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/24563506 |
| Is SIRT2 required for necroptosis? | Newton K, Hildebrand JM, Shen Z, Rodriguez D, Alvarez-Diaz S, Petersen S, Shah S, Dugger DL, Huang C, Auwerx J, Vandenabeele P, Green DR, Ashkenazi A, Dixit VM, Kaiser WJ, Strasser A, Degterev A, Silke J | Nature | 24572428 | Nature | 2014 Feb 27 | https://www.ncbi.nlm.nih.gov/pubmed/24572428 |
| Apaf1 apoptotic function critically limits Sonic hedgehog signaling during craniofacial development. | Long AB, Kaiser WJ, Mocarski ES, Caspary T | Cell death and differentiation | 23892366 | Cell Death Differ | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23892366 |
| Viral modulation of programmed necrosis. | Kaiser WJ, Upton JW, Mocarski ES | Current opinion in virology | 23773332 | Curr Opin Virol | 2013 Jun | https://www.ncbi.nlm.nih.gov/pubmed/23773332 |
| Caspase-8 as an Effector and Regulator of NLRP3 Inflammasome Signaling. | Antonopoulos C, Russo HM, El Sanadi C, Martin BN, Li X, Kaiser WJ, Mocarski ES, Dubyak GR | The Journal of biological chemistry | 26100631 | J Biol Chem | 2015 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/26100631 |
| T cell-intrinsic ASC critically promotes T(H)17-mediated experimental autoimmune encephalomyelitis. | Martin BN, Wang C, Zhang CJ, Kang Z, Gulen MF, Zepp JA, Zhao J, Bian G, Do JS, Min B, Pavicic PG Jr, El-Sanadi C, Fox PL, Akitsu A, Iwakura Y, Sarkar A, Wewers MD, Kaiser WJ, Mocarski ES, Rothenberg ME, Hise AG, Dubyak GR, Ransohoff RM, Li X | Nature immunology | 26998763 | Nat Immunol | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/26998763 |
| Necroptosis-based CRISPR knockout screen reveals Neuropilin-1 as a critical host factor for early stages of murine cytomegalovirus infection. | Lane RK, Guo H, Fisher AD, Diep J, Lai Z, Chen Y, Upton JW, Carette J, Mocarski ES, Kaiser WJ | Proceedings of the National Academy of Sciences of the United States of America | 32747526 | Proc Natl Acad Sci U S A | 2020 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/32747526 |
| Caspase-8 and RIP kinases regulate bacteria-induced innate immune responses and cell death. | Weng D, Marty-Roix R, Ganesan S, Proulx MK, Vladimer GI, Kaiser WJ, Mocarski ES, Pouliot K, Chan FK, Kelliher MA, Harris PA, Bertin J, Gough PJ, Shayakhmetov DM, Goguen JD, Fitzgerald KA, Silverman N, Lien E | Proceedings of the National Academy of Sciences of the United States of America | 24799678 | Proc Natl Acad Sci U S A | 2014 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/24799678 |
| RIP3 induces apoptosis independent of pronecrotic kinase activity. | Mandal P, Berger SB, Pillay S, Moriwaki K, Huang C, Guo H, Lich JD, Finger J, Kasparcova V, Votta B, Ouellette M, King BW, Wisnoski D, Lakdawala AS, DeMartino MP, Casillas LN, Haile PA, Sehon CA, Marquis RW, Upton J, Daley-Bauer LP, Roback L, Ramia N, Dovey CM, Carette JE, Chan FK, Bertin J, Gough PJ, Mocarski ES, Kaiser WJ | Molecular cell | 25459880 | Mol Cell | 2014 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/25459880 |
| Caspase-8 modulates dectin-1 and complement receptor 3-driven IL-1β production in response to β-glucans and the fungal pathogen, Candida albicans. | Ganesan S, Rathinam VAK, Bossaller L, Army K, Kaiser WJ, Mocarski ES, Dillon CP, Green DR, Mayadas TN, Levitz SM, Hise AG, Silverman N, Fitzgerald KA | Journal of immunology (Baltimore, Md. : 1950) | 25063877 | J Immunol | 2014 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/25063877 |
| RIP3 mediates the embryonic lethality of caspase-8-deficient mice. | Kaiser WJ, Upton JW, Long AB, Livingston-Rosanoff D, Daley-Bauer LP, Hakem R, Caspary T, Mocarski ES | Nature | 21368762 | Nature | 2011 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/21368762 |
| Caspase-8 scaffolding function and MLKL regulate NLRP3 inflammasome activation downstream of TLR3. | Kang S, Fernandes-Alnemri T, Rogers C, Mayes L, Wang Y, Dillon C, Roback L, Kaiser W, Oberst A, Sagara J, Fitzgerald KA, Green DR, Zhang J, Mocarski ES, Alnemri ES | Nature communications | 26104484 | Nat Commun | 2015 Jun 24 | https://www.ncbi.nlm.nih.gov/pubmed/26104484 |
| ESCRTing Necroptosis. | Guo H, Kaiser WJ | Cell | 28388403 | Cell | 2017 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/28388403 |
| Murine cytomegalovirus IE3-dependent transcription is required for DAI/ZBP1-mediated necroptosis. | Sridharan H, Ragan KB, Guo H, Gilley RP, Landsteiner VJ, Kaiser WJ, Upton JW | EMBO reports | 28607035 | EMBO Rep | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28607035 |
| Necroptosis: The Trojan horse in cell autonomous antiviral host defense. | Mocarski ES, Guo H, Kaiser WJ | Virology | 25819165 | Virology | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25819165 |
| Herpes simplex virus suppresses necroptosis in human cells. | Guo H, Omoto S, Harris PA, Finger JN, Bertin J, Gough PJ, Kaiser WJ, Mocarski ES | Cell host & microbe | 25674983 | Cell Host Microbe | 2015 Feb 11 | https://www.ncbi.nlm.nih.gov/pubmed/25674983 |
| Suppression of RIP3-dependent necroptosis by human cytomegalovirus. | Omoto S, Guo H, Talekar GR, Roback L, Kaiser WJ, Mocarski ES | The Journal of biological chemistry | 25778401 | J Biol Chem | 2015 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/25778401 |
| Proapoptotic chemotherapeutic drugs induce noncanonical processing and release of IL-1β via caspase-8 in dendritic cells. | Antonopoulos C, El Sanadi C, Kaiser WJ, Mocarski ES, Dubyak GR | Journal of immunology (Baltimore, Md. : 1950) | 24078693 | J Immunol | 2013 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/24078693 |
| RIPK3 Activates Parallel Pathways of MLKL-Driven Necroptosis and FADD-Mediated Apoptosis to Protect against Influenza A Virus. | Nogusa S, Thapa RJ, Dillon CP, Liedmann S, Oguin TH 3rd, Ingram JP, Rodriguez DA, Kosoff R, Sharma S, Sturm O, Verbist K, Gough PJ, Bertin J, Hartmann BM, Sealfon SC, Kaiser WJ, Mocarski ES, López CB, Thomas PG, Oberst A, Green DR, Balachandran S | Cell host & microbe | 27321907 | Cell Host Microbe | 2016 Jul 13 | https://www.ncbi.nlm.nih.gov/pubmed/27321907 |
| Cutting Edge: RIP1 kinase activity is dispensable for normal development but is a key regulator of inflammation in SHARPIN-deficient mice. | Berger SB, Kasparcova V, Hoffman S, Swift B, Dare L, Schaeffer M, Capriotti C, Cook M, Finger J, Hughes-Earle A, Harris PA, Kaiser WJ, Mocarski ES, Bertin J, Gough PJ | Journal of immunology (Baltimore, Md. : 1950) | 24821972 | J Immunol | 2014 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/24821972 |
| Species-independent contribution of ZBP1/DAI/DLM-1-triggered necroptosis in host defense against HSV1. | Guo H, Gilley RP, Fisher A, Lane R, Landsteiner VJ, Ragan KB, Dovey CM, Carette JE, Upton JW, Mocarski ES, Kaiser WJ | Cell death & disease | 30050136 | Cell Death Dis | 2018 Jul 26 | https://www.ncbi.nlm.nih.gov/pubmed/30050136 |
| SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells. | Myers SA, Peddada S, Chatterjee N, Friedrich T, Tomoda K, Krings G, Thomas S, Maynard J, Broeker M, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B | eLife | 26949256 | Elife | 2016 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/26949256 |
| Adult Neurogenesis Is Sustained by Symmetric Self-Renewal and Differentiation. | Obernier K, Cebrian-Silla A, Thomson M, Parraguez JI, Anderson R, Guinto C, Rodas Rodriguez J, Garcia-Verdugo JM, Alvarez-Buylla A | Cell stem cell | 29395056 | Cell Stem Cell | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29395056 |
| Diffusion as a Ruler: Modeling Kinesin Diffusion as a Length Sensor for Intraflagellar Transport. | Hendel NL, Thomson M, Marshall WF | Biophysical journal | 29414712 | Biophys J | 2018 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/29414712 |
| D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response. | Jiang J, Chen S, Tsou T, McGinnis CS, Khazaei T, Zhu Q, Park JH, Strazhnik IM, Vielmetter J, Gong Y, Hanna J, Chow ED, Sivak DA, Gartner ZJ, Thomson M | bioRxiv : the preprint server for biology | 37131803 | bioRxiv | 2025 May 23 | https://www.ncbi.nlm.nih.gov/pubmed/37131803 |
| Integrated measurement of intracellular proteins and transcripts in single cells. | Xu AM, Liu Q, Takata KL, Jeoung S, Su Y, Antoshechkin I, Chen S, Thomson M, Heath JR | Lab on a chip | 30178802 | Lab Chip | 2018 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/30178802 |
| In vitro patterning of pluripotent stem cell-derived intestine recapitulates in vivo human development. | Tsai YH, Nattiv R, Dedhia PH, Nagy MS, Chin AM, Thomson M, Klein OD, Spence JR | Development (Cambridge, England) | 27927684 | Development | 2017 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/27927684 |
| Transcriptome-wide Analysis Reveals Hallmarks of Human Intestine Development and Maturation In Vitro and In Vivo. | Finkbeiner SR, Hill DR, Altheim CH, Dedhia PH, Taylor MJ, Tsai YH, Chin AM, Mahe MM, Watson CL, Freeman JJ, Nattiv R, Thomson M, Klein OD, Shroyer NF, Helmrath MA, Teitelbaum DH, Dempsey PJ, Spence JR | Stem cell reports | 26050928 | Stem Cell Reports | 2015 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/26050928 |
| Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing. | Heimberg G, Bhatnagar R, El-Samad H, Thomson M | Cell systems | 27135536 | Cell Syst | 2016 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/27135536 |
| Spin glasses, error correcting codes, and synchronization of human stem cell organoids. | Thomson M | Cell | 36736298 | Cell | 2023 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/36736298 |
| Environmental statistics and optimal regulation. | Sivak DA, Thomson M | PLoS computational biology | 25254493 | PLoS Comput Biol | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25254493 |
| Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors. | Morsut L, Roybal KT, Xiong X, Gordley RM, Coyle SM, Thomson M, Lim WA | Cell | 26830878 | Cell | 2016 Feb 11 | https://www.ncbi.nlm.nih.gov/pubmed/26830878 |
| A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity. | Cerchiari AE, Garbe JC, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomson M, Gartner ZJ | Proceedings of the National Academy of Sciences of the United States of America | 25633040 | Proc Natl Acad Sci U S A | 2015 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/25633040 |
| Controlling organization and forces in active matter through optically defined boundaries. | Ross TD, Lee HJ, Qu Z, Banks RA, Phillips R, Thomson M | Nature | 31391558 | Nature | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31391558 |
| Transient Thresholding: A Mechanism Enabling Noncooperative Transcriptional Circuitry to Form a Switch. | Aull KH, Tanner EJ, Thomson M, Weinberger LS | Biophysical journal | 28591615 | Biophys J | 2017 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/28591615 |
| RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites. | Engreitz JM, Sirokman K, McDonel P, Shishkin AA, Surka C, Russell P, Grossman SR, Chow AY, Guttman M, Lander ES | Cell | 25259926 | Cell | 2014 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/25259926 |
| SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding. | Quinodoz SA, Bhat P, Chovanec P, Jachowicz JW, Ollikainen N, Detmar E, Soehalim E, Guttman M | Nature protocols | 35013617 | Nat Protoc | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35013617 |
| The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome. | Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, Guttman M | Science (New York, N.Y.) | 23828888 | Science | 2013 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/23828888 |
| RAP-MS: A Method to Identify Proteins that Interact Directly with a Specific RNA Molecule in Cells. | McHugh CA, Guttman M | Methods in molecular biology (Clifton, N.J.) | 29130217 | Methods Mol Biol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29130217 |
| m(6)A RNA methylation promotes XIST-mediated transcriptional repression. | Patil DP, Chen CK, Pickering BF, Chow A, Jackson C, Guttman M, Jaffrey SR | Nature | 27602518 | Nature | 2016 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/27602518 |
| Simultaneous generation of many RNA-seq libraries in a single reaction. | Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J | Nature methods | 25730492 | Nat Methods | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25730492 |
| The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. | McHugh CA, Chen CK, Chow A, Surka CF, Tran C, McDonel P, Pandya-Jones A, Blanco M, Burghard C, Moradian A, Sweredoski MJ, Shishkin AA, Su J, Lander ES, Hess S, Plath K, Guttman M | Nature | 25915022 | Nature | 2015 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/25915022 |
| Microfluidic SlipChip device for multistep multiplexed biochemistry on a nanoliter scale. | Zhukov DV, Khorosheva EM, Khazaei T, Du W, Selck DA, Shishkin AA, Ismagilov RF | Lab on a chip | 31441477 | Lab Chip | 2019 Oct 7 | https://www.ncbi.nlm.nih.gov/pubmed/31441477 |
| Long noncoding RNAs: an emerging link between gene regulation and nuclear organization. | Quinodoz S, Guttman M | Trends in cell biology | 25441720 | Trends Cell Biol | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25441720 |
| Local regulation of gene expression by lncRNA promoters, transcription and splicing. | Engreitz JM, Haines JE, Perez EM, Munson G, Chen J, Kane M, McDonel PE, Guttman M, Lander ES | Nature | 27783602 | Nature | 2016 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/27783602 |
| Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. | Guttman M, Russell P, Ingolia NT, Weissman JS, Lander ES | Cell | 23810193 | Cell | 2013 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/23810193 |
| Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP). | Van Nostrand EL, Pratt GA, Shishkin AA, Gelboin-Burkhart C, Fang MY, Sundararaman B, Blue SM, Nguyen TB, Surka C, Elkins K, Stanton R, Rigo F, Guttman M, Yeo GW | Nature methods | 27018577 | Nat Methods | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27018577 |
| The NORAD lncRNA assembles a topoisomerase complex critical for genome stability. | Munschauer M, Nguyen CT, Sirokman K, Hartigan CR, Hogstrom L, Engreitz JM, Ulirsch JC, Fulco CP, Subramanian V, Chen J, Schenone M, Guttman M, Carr SA, Lander ES | Nature | 30150775 | Nature | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30150775 |
| A hyperspectral method to assay the microphysiological fates of nanomaterials in histological samples. | SoRelle ED, Liba O, Campbell JL, Dalal R, Zavaleta CL, de la Zerda A | eLife | 27536877 | Elife | 2016 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/27536877 |
| Optical coherence contrast imaging using gold nanorods in living mice eyes. | de la Zerda A, Prabhulkar S, Perez VL, Ruggeri M, Paranjape AS, Habte F, Gambhir SS, Awdeh RM | Clinical & experimental ophthalmology | 24533647 | Clin Exp Ophthalmol | 2015 May-Jun | https://www.ncbi.nlm.nih.gov/pubmed/24533647 |
| Speckle modulation enables high-resolution wide-field human brain tumor margin detection and in vivo murine neuroimaging. | Yecies D, Liba O, SoRelle ED, Dutta R, Yuan E, Vogel H, Grant GA, de la Zerda A | Scientific reports | 31316099 | Sci Rep | 2019 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/31316099 |
| Spectral- and Polarization-Dependent Scattering of Gold Nanobipyramids for Exogenous Contrast in Optical Coherence Tomography. | Keahey P, Si P, Razavi M, Yu S, Lippok N, Villiger M, Padera TP, de la Zerda A, Bouma B | Nano letters | 34644094 | Nano Lett | 2021 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/34644094 |
| Imaging the glycosylation state of cell surface glycoproteins by two-photon fluorescence lifetime imaging microscopy. | Belardi B, de la Zerda A, Spiciarich DR, Maund SL, Peehl DM, Bertozzi CR | Angewandte Chemie (International ed. in English) | 24259491 | Angew Chem Int Ed Engl | 2013 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/24259491 |
| Contrast-enhanced optical coherence tomography with picomolar sensitivity for functional in vivo imaging. | Liba O, SoRelle ED, Sen D, de la Zerda A | Scientific reports | 26987475 | Sci Rep | 2016 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/26987475 |
| Quantitative contrast-enhanced optical coherence tomography. | Winetraub Y, SoRelle ED, Liba O, de la Zerda A | Applied physics letters | 26869724 | Appl Phys Lett | 2016 Jan 11 | https://www.ncbi.nlm.nih.gov/pubmed/26869724 |
| Biofunctionalization of Large Gold Nanorods Realizes Ultrahigh-Sensitivity Optical Imaging Agents. | SoRelle ED, Liba O, Hussain Z, Gambhir M, de la Zerda A | Langmuir : the ACS journal of surfaces and colloids | 26477361 | Langmuir | 2015 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/26477361 |
| Optical-resolution photoacoustic microscopy with a needle-shaped beam. | Cao R, Zhao J, Li L, Du L, Zhang Y, Luo Y, Jiang L, Davis S, Zhou Q, de la Zerda A, Wang LV | Nature photonics | 38149029 | Nat Photonics | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38149029 |
| Spatiotemporal Tracking of Brain-Tumor-Associated Myeloid Cells in Vivo through Optical Coherence Tomography with Plasmonic Labeling and Speckle Modulation. | SoRelle ED, Yecies DW, Liba O, Bennett FC, Graef CM, Dutta R, Mitra S, Joubert LM, Cheshier S, Grant GA, de la Zerda A | ACS nano | 31259527 | ACS Nano | 2019 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/31259527 |
| Gold Nanobipyramids as Second Near Infrared Optical Coherence Tomography Contrast Agents for in Vivo Multiplexing Studies. | Si P, Shevidi S, Yuan E, Yuan K, Lautman Z, Jeffrey SS, Sledge GW, de la Zerda A | Nano letters | 31585502 | Nano Lett | 2020 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/31585502 |
| High-resolution contrast-enhanced optical coherence tomography in mice retinae. | Sen D, SoRelle ED, Liba O, Dalal R, Paulus YM, Kim TW, Moshfeghi DM, de la Zerda A | Journal of biomedical optics | 27264492 | J Biomed Opt | 2016 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/27264492 |
| A tissue checkpoint regulates type 2 immunity. | Van Dyken SJ, Nussbaum JC, Lee J, Molofsky AB, Liang HE, Pollack JL, Gate RE, Haliburton GE, Ye CJ, Marson A, Erle DJ, Locksley RM | Nature immunology | 27749840 | Nat Immunol | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27749840 |
| Young blood reverses age-related impairments in cognitive function and synaptic plasticity in mice. | Villeda SA, Plambeck KE, Middeldorp J, Castellano JM, Mosher KI, Luo J, Smith LK, Bieri G, Lin K, Berdnik D, Wabl R, Udeochu J, Wheatley EG, Zou B, Simmons DA, Xie XS, Longo FM, Wyss-Coray T | Nature medicine | 24793238 | Nat Med | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24793238 |
| The systemic environment: at the interface of aging and adult neurogenesis. | Smith LK, White CW 3rd, Villeda SA | Cell and tissue research | 29124393 | Cell Tissue Res | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29124393 |
| Microglia communication: Parallels between aging and Alzheimer's disease. | Udeochu JC, Shea JM, Villeda SA | Clinical & experimental neuroimmunology | 27840659 | Clin Exp Neuroimmunol | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27840659 |
| Aging and brain rejuvenation as systemic events. | Bouchard J, Villeda SA | Journal of neurochemistry | 25327899 | J Neurochem | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/25327899 |
| Mechanisms of Hippocampal Aging and the Potential for Rejuvenation. | Fan X, Wheatley EG, Villeda SA | Annual review of neuroscience | 28441118 | Annu Rev Neurosci | 2017 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/28441118 |
| Therapeutic potential of systemic brain rejuvenation strategies for neurodegenerative disease. | Horowitz AM, Villeda SA | F1000Research | 28815019 | F1000Res | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28815019 |
| Migratory and adhesive cues controlling innate-like lymphocyte surveillance of the pathogen-exposed surface of the lymph node. | Zhang Y, Roth TL, Gray EE, Chen H, Rodda LB, Liang Y, Ventura P, Villeda S, Crocker PR, Cyster JG | eLife | 27487469 | Elife | 2016 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/27487469 |
| β2-microglobulin is a systemic pro-aging factor that impairs cognitive function and neurogenesis. | Smith LK, He Y, Park JS, Bieri G, Snethlage CE, Lin K, Gontier G, Wabl R, Plambeck KE, Udeochu J, Wheatley EG, Bouchard J, Eggel A, Narasimha R, Grant JL, Luo J, Wyss-Coray T, Villeda SA | Nature medicine | 26147761 | Nat Med | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26147761 |
| Cause-specific risk of hospital admission related to extreme heat in older adults. | Bobb JF, Obermeyer Z, Wang Y, Dominici F | JAMA | 25536257 | JAMA | 2014 Dec 24-31 | https://www.ncbi.nlm.nih.gov/pubmed/25536257 |
| Emergency care in 59 low- and middle-income countries: a systematic review. | Obermeyer Z, Abujaber S, Makar M, Stoll S, Kayden SR, Wallis LA, Reynolds TA, Acute Care Development Consortium | Bulletin of the World Health Organization | 26478615 | Bull World Health Organ | 2015 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/26478615 |
| Estimating 1-Year Mortality for High-Risk Primary Care Patients Using the "Surprise" Question. | Lakin JR, Robinson MG, Bernacki RE, Powers BW, Block SD, Cunningham R, Obermeyer Z | JAMA internal medicine | 27695853 | JAMA Intern Med | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27695853 |
| Short-term Mortality Prediction for Elderly Patients Using Medicare Claims Data. | Makar M, Ghassemi M, Cutler DM, Obermeyer Z | International journal of machine learning and computing | 28018571 | Int J Mach Learn Comput | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/28018571 |
| Making recording and analysis of chief complaint a priority for global emergency care research in low-income countries. | Mowafi H, Dworkis D, Bisanzo M, Hansoti B, Seidenberg P, Obermeyer Z, Hauswald M, Reynolds TA | Academic emergency medicine : official journal of the Society for Academic Emergency Medicine | 24283813 | Acad Emerg Med | 2013 Dec | https://www.ncbi.nlm.nih.gov/pubmed/24283813 |
| Machine Learning in Health Care. | National Bureau of Economic Research bulletin on aging and health | 30272872 | Natl Bur Econ Res Bull Aging Health | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30272872 | |
| Development and Application of a Machine Learning Approach to Assess Short-term Mortality Risk Among Patients With Cancer Starting Chemotherapy. | Elfiky AA, Pany MJ, Parikh RB, Obermeyer Z | JAMA network open | 30646043 | JAMA Netw Open | 2018 Jul 6 | https://www.ncbi.nlm.nih.gov/pubmed/30646043 |
| Lost in Thought - The Limits of the Human Mind and the Future of Medicine. | Obermeyer Z, Lee TH | The New England journal of medicine | 28953443 | N Engl J Med | 2017 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/28953443 |
| Does Machine Learning Automate Moral Hazard and Error? | Mullainathan S, Obermeyer Z | The American economic review | 28781376 | Am Econ Rev | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28781376 |
| Characteristics and determinants of high-risk unscheduled return visits to the emergency department. | Hiti EA, Tamim H, Makki M, Geha M, Kaddoura R, Obermeyer Z | Emergency medicine journal : EMJ | 31806725 | Emerg Med J | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31806725 |
| Individual differences in normal body temperature: longitudinal big data analysis of patient records. | Obermeyer Z, Samra JK, Mullainathan S | BMJ (Clinical research ed.) | 29237616 | BMJ | 2017 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/29237616 |
| The Emergency Care of Patients With Cancer: Setting the Research Agenda. | Brown J, Grudzen C, Kyriacou DN, Obermeyer Z, Quest T, Rivera D, Stone S, Wright J, Shelburne N | Annals of emergency medicine | 26921969 | Ann Emerg Med | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26921969 |
| Research priorities for data collection and management within global acute and emergency care systems. | Reynolds TA, Bisanzo M, Dworkis D, Hansoti B, Obermeyer Z, Seidenberg P, Hauswald M, Mowafi H | Academic emergency medicine : official journal of the Society for Academic Emergency Medicine | 24341579 | Acad Emerg Med | 2013 Dec | https://www.ncbi.nlm.nih.gov/pubmed/24341579 |
| Association between the Medicare hospice benefit and health care utilization and costs for patients with poor-prognosis cancer. | Obermeyer Z, Makar M, Abujaber S, Dominici F, Block S, Cutler DM | JAMA | 25387186 | JAMA | 2014 Nov 12 | https://www.ncbi.nlm.nih.gov/pubmed/25387186 |
| Emergency Care Use and the Medicare Hospice Benefit for Individuals with Cancer with a Poor Prognosis. | Obermeyer Z, Clarke AC, Makar M, Schuur JD, Cutler DM | Journal of the American Geriatrics Society | 26805592 | J Am Geriatr Soc | 2016 Feb | https://www.ncbi.nlm.nih.gov/pubmed/26805592 |
| Prediction Policy Problems. | Kleinberg J, Ludwig J, Mullainathan S, Obermeyer Z | The American economic review | 27199498 | Am Econ Rev | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/27199498 |
| Acute myocardial infarction hospital admissions and deaths in England: a national follow-back and follow-forward record-linkage study. | Asaria P, Elliott P, Douglass M, Obermeyer Z, Soljak M, Majeed A, Ezzati M | The Lancet. Public health | 29253451 | Lancet Public Health | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29253451 |
| Cost savings associated with expanded hospice use in Medicare. | Powers BW, Makar M, Jain SH, Cutler DM, Obermeyer Z | Journal of palliative medicine | 25806563 | J Palliat Med | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25806563 |
| Contributions of risk factors and medical care to cardiovascular mortality trends. | Ezzati M, Obermeyer Z, Tzoulaki I, Mayosi BM, Elliott P, Leon DA | Nature reviews. Cardiology | 26076950 | Nat Rev Cardiol | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/26076950 |
| Predicting the Future - Big Data, Machine Learning, and Clinical Medicine. | Obermeyer Z, Emanuel EJ | The New England journal of medicine | 27682033 | N Engl J Med | 2016 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/27682033 |
| Short-term Outcomes for Medicare Beneficiaries After Low-acuity Visits to Emergency Departments and Clinics. | Niedzwiecki M, Baicker K, Wilson M, Cutler DM, Obermeyer Z | Medical care | 27078822 | Med Care | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27078822 |
| Early death after emergency department discharge in patients with psychiatric illness. | Chang BP, Pany MJ, Obermeyer Z | The American journal of emergency medicine | 27884584 | Am J Emerg Med | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/27884584 |
| Burden of emergency conditions and emergency care usage: new estimates from 40 countries. | Chang CY, Abujaber S, Reynolds TA, Camargo CA Jr, Obermeyer Z | Emergency medicine journal : EMJ | 27334758 | Emerg Med J | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27334758 |
| Frequency of ED revisits and death among older adults after a fall. | Liu SW, Obermeyer Z, Chang Y, Shankar KN | The American journal of emergency medicine | 25983268 | Am J Emerg Med | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/25983268 |
| Predictive modeling of U.S. health care spending in late life. | Einav L, Finkelstein A, Mullainathan S, Obermeyer Z | Science (New York, N.Y.) | 29954980 | Science | 2018 Jun 29 | https://www.ncbi.nlm.nih.gov/pubmed/29954980 |
| Physician Characteristics Strongly Predict Patient Enrollment In Hospice. | Obermeyer Z, Powers BW, Makar M, Keating NL, Cutler DM | Health affairs (Project Hope) | 26056205 | Health Aff (Millwood) | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/26056205 |
| Regulation of predictive analytics in medicine. | Parikh RB, Obermeyer Z, Navathe AS | Science (New York, N.Y.) | 30792287 | Science | 2019 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/30792287 |
| Association of Clinical Characteristics With Variation in Emergency Physician Preferences for Patients. | Chang CY, Obermeyer Z | JAMA network open | 31968113 | JAMA Netw Open | 2020 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/31968113 |
| Profiling stem cell states in three-dimensional biomaterial niches using high content image informatics. | Dhaliwal A, Brenner M, Wolujewicz P, Zhang Z, Mao Y, Batish M, Kohn J, Moghe PV | Acta biomaterialia | 27590870 | Acta Biomater | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27590870 |
| Role of mir-15a/16-1 in early B cell development in a mouse model of chronic lymphocytic leukemia. | Underbayev C, Kasar S, Ruezinsky W, Degheidy H, Schneider JS, Marti G, Bauer SR, Fraidenraich D, Lightfoote MM, Parashar V, Raveche E, Batish M | Oncotarget | 27533467 | Oncotarget | 2016 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/27533467 |
| Sex Determination by Two Y-Linked Genes in Garden Asparagus. | Harkess A, Huang K, van der Hulst R, Tissen B, Caplan JL, Koppula A, Batish M, Meyers BC, Leebens-Mack J | The Plant cell | 32220850 | Plant Cell | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32220850 |
| Astrocyte-produced leukemia inhibitory factor expands the neural stem/progenitor pool following perinatal hypoxia-ischemia. | Felling RJ, Covey MV, Wolujewicz P, Batish M, Levison SW | Journal of neuroscience research | 27661001 | J Neurosci Res | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27661001 |
| The long noncoding RNA SPRIGHTLY acts as an intranuclear organizing hub for pre-mRNA molecules. | Lee B, Sahoo A, Marchica J, Holzhauser E, Chen X, Li JL, Seki T, Govindarajan SS, Markey FB, Batish M, Lokhande SJ, Zhang S, Ray A, Perera RJ | Science advances | 28508063 | Sci Adv | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28508063 |
| Intragenic antagonistic roles of protein and circRNA in tumorigenesis. | Guarnerio J, Zhang Y, Cheloni G, Panella R, Mae Katon J, Simpson M, Matsumoto A, Papa A, Loretelli C, Petri A, Kauppinen S, Garbutt C, Nielsen GP, Deshpande V, Castillo-Martin M, Cordon-Cardo C, Dimitrios S, Clohessy JG, Batish M, Pandolfi PP | Cell research | 31209250 | Cell Res | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31209250 |
| circCsnk1g3- and circAnkib1-regulated interferon responses in sarcoma promote tumorigenesis by shaping the immune microenvironment. | Piras R, Ko EY, Barrett C, De Simone M, Lin X, Broz MT, Tessaro FHG, Castillo-Martin M, Cordon-Cardo C, Goodridge HS, Di Vizio D, Batish M, Lawrenson K, Chen YG, Chan KS, Guarnerio J | Nature communications | 36433954 | Nat Commun | 2022 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/36433954 |
| Alterations in the mir-15a/16-1 Loci Impairs Its Processing and Augments B-1 Expansion in De Novo Mouse Model of Chronic Lymphocytic Leukemia (CLL). | Kasar S, Underbayev C, Hassan M, Ilev I, Degheidy H, Bauer S, Marti G, Lutz C, Raveche E, Batish M | PloS one | 26959643 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26959643 |
| Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression. | Zhang Y, Pitchiaya S, Cieślik M, Niknafs YS, Tien JC, Hosono Y, Iyer MK, Yazdani S, Subramaniam S, Shukla SK, Jiang X, Wang L, Liu TY, Uhl M, Gawronski AR, Qiao Y, Xiao L, Dhanasekaran SM, Juckette KM, Kunju LP, Cao X, Patel U, Batish M, Shukla GC, Paulsen MT, Ljungman M, Jiang H, Mehra R, Backofen R, Sahinalp CS, Freier SM, Watt AT, Guo S, Wei JT, Feng FY, Malik R, Chinnaiyan AM | Nature genetics | 29808028 | Nat Genet | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29808028 |
| Fluorescence In Situ Imaging of Dendritic RNAs at Single-Molecule Resolution. | Batish M, Tyagi S | Current protocols in neuroscience | 31532916 | Curr Protoc Neurosci | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31532916 |
| Therapeutic implications of activation of the host gene (Dleu2) promoter for miR-15a/16-1 in chronic lymphocytic leukemia. | Kasar S, Underbayev C, Yuan Y, Hanlon M, Aly S, Khan H, Chang V, Batish M, Gavrilova T, Badiane F, Degheidy H, Marti G, Raveche E | Oncogene | 23995789 | Oncogene | 2014 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/23995789 |
| Mechanistic Target of Rapamycin Regulates the Oligodendrocyte Cytoskeleton during Myelination. | Musah AS, Brown TL, Jeffries MA, Shang Q, Hashimoto H, Evangelou AV, Kowalski A, Batish M, Macklin WB, Wood TL | The Journal of neuroscience : the official journal of the Society for Neuroscience | 32139584 | J Neurosci | 2020 Apr 8 | https://www.ncbi.nlm.nih.gov/pubmed/32139584 |
| Monitoring T cell-dendritic cell interactions in vivo by intercellular enzymatic labelling. | Pasqual G, Chudnovskiy A, Tas JMJ, Agudelo M, Schweitzer LD, Cui A, Hacohen N, Victora GD | Nature | 29342141 | Nature | 2018 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/29342141 |
| Clonal and cellular dynamics in germinal centers. | Victora GD, Mesin L | Current opinion in immunology | 24681449 | Curr Opin Immunol | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24681449 |
| The transcription factor Foxp1 is a critical negative regulator of the differentiation of follicular helper T cells. | Wang H, Geng J, Wen X, Bi E, Kossenkov AV, Wolf AI, Tas J, Choi YS, Takata H, Day TJ, Chang LY, Sprout SL, Becker EK, Willen J, Tian L, Wang X, Xiao C, Jiang P, Crotty S, Victora GD, Showe LC, Tucker HO, Erikson J, Hu H | Nature immunology | 24859450 | Nat Immunol | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24859450 |
| Ubiquitin-mediated fluctuations in MHC class II facilitate efficient germinal center B cell responses. | Bannard O, McGowan SJ, Ersching J, Ishido S, Victora GD, Shin JS, Cyster JG | The Journal of experimental medicine | 27162138 | J Exp Med | 2016 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/27162138 |
| T follicular helper cell dynamics in germinal centers. | Shulman Z, Gitlin AD, Targ S, Jankovic M, Pasqual G, Nussenzweig MC, Victora GD | Science (New York, N.Y.) | 23887872 | Science | 2013 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/23887872 |
| Germinal center selection and the antibody response to influenza. | Victora GD, Wilson PC | Cell | 26496601 | Cell | 2015 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/26496601 |
| Germinal Center B Cell Dynamics. | Mesin L, Ersching J, Victora GD | Immunity | 27653600 | Immunity | 2016 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/27653600 |
| Monitoring the Interaction Between Dendritic Cells and T Cells In Vivo with LIPSTIC. | Pasqual G, Chudnovskiy A, Victora GD | Methods in molecular biology (Clifton, N.J.) | 36905509 | Methods Mol Biol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36905509 |
| Amino acid-insensitive mTORC1 regulation enables nutritional stress resilience in hematopoietic stem cells. | Kalaitzidis D, Lee D, Efeyan A, Kfoury Y, Nayyar N, Sykes DB, Mercier FE, Papazian A, Baryawno N, Victora GD, Neuberg D, Sabatini DM, Scadden DT | The Journal of clinical investigation | 28319048 | J Clin Invest | 2017 Apr 3 | https://www.ncbi.nlm.nih.gov/pubmed/28319048 |
| Tissue-specific emergence of regulatory and intraepithelial T cells from a clonal T cell precursor. | Bilate AM, Bousbaine D, Mesin L, Agudelo M, Leube J, Kratzert A, Dougan SK, Victora GD, Ploegh HL | Science immunology | 28783695 | Sci Immunol | 2016 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/28783695 |
| Germinal Center Selection and Affinity Maturation Require Dynamic Regulation of mTORC1 Kinase. | Ersching J, Efeyan A, Mesin L, Jacobsen JT, Pasqual G, Grabiner BC, Dominguez-Sola D, Sabatini DM, Victora GD | Immunity | 28636954 | Immunity | 2017 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/28636954 |
| What Are the Primary Limitations in B-Cell Affinity Maturation, and How Much Affinity Maturation Can We Drive with Vaccination? Lessons from the Antibody Response to HIV-1. | Victora GD, Mouquet H | Cold Spring Harbor perspectives in biology | 28630079 | Cold Spring Harb Perspect Biol | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/28630079 |
| Visualizing antibody affinity maturation in germinal centers. | Tas JM, Mesin L, Pasqual G, Targ S, Jacobsen JT, Mano YM, Chen CS, Weill JC, Reynaud CA, Browne EP, Meyer-Hermann M, Victora GD | Science (New York, N.Y.) | 26912368 | Science | 2016 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/26912368 |
| Restricted Clonality and Limited Germinal Center Reentry Characterize Memory B Cell Reactivation by Boosting. | Mesin L, Schiepers A, Ersching J, Barbulescu A, Cavazzoni CB, Angelini A, Okada T, Kurosaki T, Victora GD | Cell | 31866068 | Cell | 2020 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/31866068 |
| Inborn Errors of RNA Lariat Metabolism in Humans with Brainstem Viral Infection. | Zhang SY, Clark NE, Freije CA, Pauwels E, Taggart AJ, Okada S, Mandel H, Garcia P, Ciancanelli MJ, Biran A, Lafaille FG, Tsumura M, Cobat A, Luo J, Volpi S, Zimmer B, Sakata S, Dinis A, Ohara O, Garcia Reino EJ, Dobbs K, Hasek M, Holloway SP, McCammon K, Hussong SA, DeRosa N, Van Skike CE, Katolik A, Lorenzo L, Hyodo M, Faria E, Halwani R, Fukuhara R, Smith GA, Galvan V, Damha MJ, Al-Muhsen S, Itan Y, Boeke JD, Notarangelo LD, Studer L, Kobayashi M, Diogo L, Fairbrother WG, Abel L, Rosenberg BR, Hart PJ, Etzioni A, Casanova JL | Cell | 29474921 | Cell | 2018 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/29474921 |
| Characterizing immune repertoires by high throughput sequencing: strategies and applications. | Calis JJ, Rosenberg BR | Trends in immunology | 25306219 | Trends Immunol | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/25306219 |
| The ETS transcription factor ELF1 regulates a broadly antiviral program distinct from the type I interferon response. | Seifert LL, Si C, Saha D, Sadic M, de Vries M, Ballentine S, Briley A, Wang G, Valero-Jimenez AM, Mohamed A, Schaefer U, Moulton HM, García-Sastre A, Tripathi S, Rosenberg BR, Dittmann M | PLoS pathogens | 31682641 | PLoS Pathog | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31682641 |
| Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown. | Chung H, Calis JJA, Wu X, Sun T, Yu Y, Sarbanes SL, Dao Thi VL, Shilvock AR, Hoffmann HH, Rosenberg BR, Rice CM | Cell | 29395325 | Cell | 2018 Feb 8 | https://www.ncbi.nlm.nih.gov/pubmed/29395325 |
| Human Genetic Determinants of Viral Diseases. | Kenney AD, Dowdle JA, Bozzacco L, McMichael TM, St Gelais C, Panfil AR, Sun Y, Schlesinger LS, Anderson MZ, Green PL, López CB, Rosenberg BR, Wu L, Yount JS | Annual review of genetics | 28853921 | Annu Rev Genet | 2017 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/28853921 |
| Intrinsic Immunity Shapes Viral Resistance of Stem Cells. | Wu X, Dao Thi VL, Huang Y, Billerbeck E, Saha D, Hoffmann HH, Wang Y, Silva LAV, Sarbanes S, Sun T, Andrus L, Yu Y, Quirk C, Li M, MacDonald MR, Schneider WM, An X, Rosenberg BR, Rice CM | Cell | 29249360 | Cell | 2018 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/29249360 |
| Complex Autoinflammatory Syndrome Unveils Fundamental Principles of JAK1 Kinase Transcriptional and Biochemical Function. | Gruber CN, Calis JJA, Buta S, Evrony G, Martin JC, Uhl SA, Caron R, Jarchin L, Dunkin D, Phelps R, Webb BD, Saland JM, Merad M, Orange JS, Mace EM, Rosenberg BR, Gelb BD, Bogunovic D | Immunity | 32750333 | Immunity | 2020 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/32750333 |
| Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance. | Rosenberg BR, Depla M, Freije CA, Gaucher D, Mazouz S, Boisvert M, Bédard N, Bruneau J, Rice CM, Shoukry NH | PLoS pathogens | 30222771 | PLoS Pathog | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30222771 |
| Quantitative Analyses of Core Promoters Enable Precise Engineering of Regulated Gene Expression in Mammalian Cells. | Ede C, Chen X, Lin MY, Chen YY | ACS synthetic biology | 26883397 | ACS Synth Biol | 2016 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/26883397 |
| ADDENDUM: T Cells Expressing CD19/CD20 Bispecific Chimeric Antigen Receptors Prevent Antigen Escape by Malignant B Cells. | Zah E, Lin MY, Silva-Benedict A, Jensen MC, Chen YY | Cancer immunology research | 27371639 | Cancer Immunol Res | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27371639 |
| T Cells Expressing CD19/CD20 Bispecific Chimeric Antigen Receptors Prevent Antigen Escape by Malignant B Cells. | Zah E, Lin MY, Silva-Benedict A, Jensen MC, Chen YY | Cancer immunology research | 27059623 | Cancer Immunol Res | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27059623 |
| Mammalian synthetic biology in the age of genome editing and personalized medicine. | Ho P, Chen YY | Current opinion in chemical biology | 28628856 | Curr Opin Chem Biol | 2017 Oct | https://www.ncbi.nlm.nih.gov/pubmed/28628856 |
| CARs: Synthetic Immunoreceptors for Cancer Therapy and Beyond. | Chang ZL, Chen YY | Trends in molecular medicine | 28416139 | Trends Mol Med | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28416139 |
| Modularly Constructed Synthetic Granzyme B Molecule Enables Interrogation of Intracellular Proteases for Targeted Cytotoxicity. | Ho P, Ede C, Chen YY | ACS synthetic biology | 28510446 | ACS Synth Biol | 2017 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/28510446 |
| Engineering primary T cells with chimeric antigen receptors for rewired responses to soluble ligands. | Chang ZL, Hou AJ, Chen YY | Nature protocols | 32103205 | Nat Protoc | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32103205 |
| Identification and selective expansion of functionally superior T cells expressing chimeric antigen receptors. | Chang ZL, Silver PA, Chen YY | Journal of translational medicine | 25990251 | J Transl Med | 2015 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/25990251 |
| Outsmarting and outmuscling cancer cells with synthetic and systems immunology. | Chen LC, Chen YY | Current opinion in biotechnology | 30822698 | Curr Opin Biotechnol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30822698 |
| Rewiring T-cell responses to soluble factors with chimeric antigen receptors. | Chang ZL, Lorenzini MH, Chen X, Tran U, Bangayan NJ, Chen YY | Nature chemical biology | 29377003 | Nat Chem Biol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29377003 |
| TGF-β-responsive CAR-T cells promote anti-tumor immune function. | Hou AJ, Chang ZL, Lorenzini MH, Zah E, Chen YY | Bioengineering & translational medicine | 30065964 | Bioeng Transl Med | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/30065964 |
| Validation of in vivo 2D displacements from spiral cine DENSE at 3T. | Wehner GJ, Suever JD, Haggerty CM, Jing L, Powell DK, Hamlet SM, Grabau JD, Mojsejenko WD, Zhong X, Epstein FH, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 25634468 | J Cardiovasc Magn Reson | 2015 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/25634468 |
| Gadolinium free cardiovascular magnetic resonance with 2-point Cine balanced steady state free precession. | Stromp TA, Leung SW, Andres KN, Jing L, Fornwalt BK, Charnigo RJ, Sorrell VL, Vandsburger MH | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 26520782 | J Cardiovasc Magn Reson | 2015 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/26520782 |
| Right Ventricular Strain, Torsion, and Dyssynchrony in Healthy Subjects Using 3D Spiral Cine DENSE Magnetic Resonance Imaging. | Suever JD, Wehner GJ, Jing L, Powell DK, Hamlet SM, Grabau JD, Mojsejenko D, Andres KN, Haggerty CM, Fornwalt BK | IEEE transactions on medical imaging | 28055859 | IEEE Trans Med Imaging | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28055859 |
| Optimal configuration of respiratory navigator gating for the quantification of left ventricular strain using spiral cine displacement encoding with stimulated echoes (DENSE) MRI. | Hamlet SM, Haggerty CM, Suever JD, Wehner GJ, Andres KN, Powell DK, Zhong X, Fornwalt BK | Journal of magnetic resonance imaging : JMRI | 27458823 | J Magn Reson Imaging | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/27458823 |
| Obesity reduces left ventricular strains, torsion, and synchrony in mouse models: a cine displacement encoding with stimulated echoes (DENSE) cardiovascular magnetic resonance study. | Kramer SP, Powell DK, Haggerty CM, Binkley CM, Mattingly AC, Cassis LA, Epstein FH, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 24380567 | J Cardiovasc Magn Reson | 2013 Dec 31 | https://www.ncbi.nlm.nih.gov/pubmed/24380567 |
| Comparison of left ventricular strains and torsion derived from feature tracking and DENSE CMR. | Wehner GJ, Jing L, Haggerty CM, Suever JD, Chen J, Hamlet SM, Feindt JA, Dimitri Mojsejenko W, Fogel MA, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 30208894 | J Cardiovasc Magn Reson | 2018 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/30208894 |
| Electronic health record phenotype in subjects with genetic variants associated with arrhythmogenic right ventricular cardiomyopathy: a study of 30,716 subjects with exome sequencing. | Haggerty CM, James CA, Calkins H, Tichnell C, Leader JB, Hartzel DN, Nevius CD, Pendergrass SA, Person TN, Schwartz M, Ritchie MD, Carey DJ, Ledbetter DH, Williams MS, Dewey FE, Lopez A, Penn J, Overton JD, Reid JG, Lebo M, Mason-Suares H, Austin-Tse C, Rehm HL, Delisle BP, Makowski DJ, Mehra VC, Murray MF, Fornwalt BK | Genetics in medicine : official journal of the American College of Medical Genetics | 28471438 | Genet Med | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28471438 |
| Predicting deterioration of ventricular function in patients with repaired tetralogy of Fallot using machine learning. | Samad MD, Wehner GJ, Arbabshirani MR, Jing L, Powell AJ, Geva T, Haggerty CM, Fornwalt BK | European heart journal. Cardiovascular Imaging | 29538684 | Eur Heart J Cardiovasc Imaging | 2018 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/29538684 |
| Left and right ventricular dyssynchrony and strains from cardiovascular magnetic resonance feature tracking do not predict deterioration of ventricular function in patients with repaired tetralogy of Fallot. | Jing L, Wehner GJ, Suever JD, Charnigo RJ, Alhadad S, Stearns E, Mojsejenko D, Haggerty CM, Hickey K, Valente AM, Geva T, Powell AJ, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 27549809 | J Cardiovasc Magn Reson | 2016 Aug 22 | https://www.ncbi.nlm.nih.gov/pubmed/27549809 |
| Routinely reported ejection fraction and mortality in clinical practice: where does the nadir of risk lie? | Wehner GJ, Jing L, Haggerty CM, Suever JD, Leader JB, Hartzel DN, Kirchner HL, Manus JNA, James N, Ayar Z, Gladding P, Good CW, Cleland JGF, Fornwalt BK | European heart journal | 31386109 | Eur Heart J | 2020 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/31386109 |
| Simplified post processing of cine DENSE cardiovascular magnetic resonance for quantification of cardiac mechanics. | Suever JD, Wehner GJ, Haggerty CM, Jing L, Hamlet SM, Binkley CM, Kramer SP, Mattingly AC, Powell DK, Bilchick KC, Epstein FH, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 25430079 | J Cardiovasc Magn Reson | 2014 Nov 28 | https://www.ncbi.nlm.nih.gov/pubmed/25430079 |
| 2D cine DENSE with low encoding frequencies accurately quantifies cardiac mechanics with improved image characteristics. | Wehner GJ, Grabau JD, Suever JD, Haggerty CM, Jing L, Powell DK, Hamlet SM, Vandsburger MH, Zhong X, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 26538111 | J Cardiovasc Magn Reson | 2015 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/26538111 |
| Reproducibility of cine displacement encoding with stimulated echoes (DENSE) cardiovascular magnetic resonance for measuring left ventricular strains, torsion, and synchrony in mice. | Haggerty CM, Kramer SP, Binkley CM, Powell DK, Mattingly AC, Charnigo R, Epstein FH, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 23981339 | J Cardiovasc Magn Reson | 2013 Aug 27 | https://www.ncbi.nlm.nih.gov/pubmed/23981339 |
| Patients with repaired tetralogy of Fallot suffer from intra- and inter-ventricular cardiac dyssynchrony: a cardiac magnetic resonance study. | Jing L, Haggerty CM, Suever JD, Alhadad S, Prakash A, Cecchin F, Skrinjar O, Geva T, Powell AJ, Fornwalt BK | European heart journal. Cardiovascular Imaging | 24996664 | Eur Heart J Cardiovasc Imaging | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/24996664 |
| Quantification of left ventricular volumes, mass, and ejection fraction using cine displacement encoding with stimulated echoes (DENSE) MRI. | Haggerty CM, Kramer SP, Skrinjar O, Binkley CM, Powell DK, Mattingly AC, Epstein FH, Fornwalt BK | Journal of magnetic resonance imaging : JMRI | 24923710 | J Magn Reson Imaging | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/24923710 |
| Predicting Survival From Large Echocardiography and Electronic Health Record Datasets: Optimization With Machine Learning. | Samad MD, Ulloa A, Wehner GJ, Jing L, Hartzel D, Good CW, Williams BA, Haggerty CM, Fornwalt BK | JACC. Cardiovascular imaging | 29909114 | JACC Cardiovasc Imaging | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29909114 |
| Impact of the cone operation on left ventricular size, function, and dyssynchrony in Ebstein anomaly: a cardiovascular magnetic resonance study. | Beroukhim RS, Jing L, Harrild DM, Fornwalt BK, Mejia-Spiegeler A, Rhodes J, Emani S, Powell AJ | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 29783986 | J Cardiovasc Magn Reson | 2018 May 21 | https://www.ncbi.nlm.nih.gov/pubmed/29783986 |
| Using a respiratory navigator significantly reduces variability when quantifying left ventricular torsion with cardiovascular magnetic resonance. | Hamlet SM, Haggerty CM, Suever JD, Wehner GJ, Andres KN, Powell DK, Charnigo RJ, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 28245864 | J Cardiovasc Magn Reson | 2017 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/28245864 |
| Typical readout durations in spiral cine DENSE yield blurred images and underestimate cardiac strains at both 3.0 T and 1.5 T. | Wehner GJ, Suever JD, Fielden SW, Powell DK, Hamlet SM, Vandsburger MH, Haggerty CM, Zhong X, Fornwalt BK | Magnetic resonance imaging | 30099059 | Magn Reson Imaging | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30099059 |
| An interactive videogame designed to improve respiratory navigator efficiency in children undergoing cardiovascular magnetic resonance. | Hamlet SM, Haggerty CM, Suever JD, Wehner GJ, Grabau JD, Andres KN, Vandsburger MH, Powell DK, Sorrell VL, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 27599620 | J Cardiovasc Magn Reson | 2016 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/27599620 |
| Association between left ventricular mechanics and diffuse myocardial fibrosis in patients with repaired Tetralogy of Fallot: a cross-sectional study. | Haggerty CM, Suever JD, Pulenthiran A, Mejia-Spiegeler A, Wehner GJ, Jing L, Charnigo RJ, Fornwalt BK, Fogel MA | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 29228952 | J Cardiovasc Magn Reson | 2017 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/29228952 |
| ATG8 Is Essential Specifically for an Autophagy-Independent Function in Apicoplast Biogenesis in Blood-Stage Malaria Parasites. | Walczak M, Ganesan SM, Niles JC, Yeh E | mBio | 29295911 | mBio | 2018 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/29295911 |
| Specific Inhibition of the Bifunctional Farnesyl/Geranylgeranyl Diphosphate Synthase in Malaria Parasites via a New Small-Molecule Binding Site. | Gisselberg JE, Herrera Z, Orchard LM, Llinás M, Yeh E | Cell chemical biology | 29276048 | Cell Chem Biol | 2018 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/29276048 |
| Plastid-endomembrane connections in apicomplexan parasites. | Boucher MJ, Yeh E | PLoS pathogens | 31194842 | PLoS Pathog | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31194842 |
| The Toxoplasma gondii Active Serine Hydrolase 4 Regulates Parasite Division and Intravacuolar Parasite Architecture. | Foe IT, Onguka O, Amberg-Johnson K, Garner RM, Amara N, Beatty W, Yeh E, Bogyo M | mSphere | 30232166 | mSphere | 2018 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/30232166 |
| The Prenylated Proteome of Plasmodium falciparum Reveals Pathogen-specific Prenylation Activity and Drug Mechanism-of-action. | Gisselberg JE, Zhang L, Elias JE, Yeh E | Molecular & cellular proteomics : MCP | 28040698 | Mol Cell Proteomics | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28040698 |
| A chemical rescue screen identifies a Plasmodium falciparum apicoplast inhibitor targeting MEP isoprenoid precursor biosynthesis. | Wu W, Herrera Z, Ebert D, Baska K, Cho SH, DeRisi JL, Yeh E | Antimicrobial agents and chemotherapy | 25367906 | Antimicrob Agents Chemother | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/25367906 |
| Small molecule inhibition of apicomplexan FtsH1 disrupts plastid biogenesis in human pathogens. | Amberg-Johnson K, Hari SB, Ganesan SM, Lorenzi HA, Sauer RT, Niles JC, Yeh E | eLife | 28826494 | Elife | 2017 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/28826494 |
| The apicoplast: now you see it, now you don't. | McFadden GI, Yeh E | International journal for parasitology | 27773518 | Int J Parasitol | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27773518 |
| Disruption of Apicoplast Biogenesis by Chemical Stabilization of an Imported Protein Evades the Delayed-Death Phenotype in Malaria Parasites. | Boucher MJ, Yeh E | mSphere | 30674649 | mSphere | 2019 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/30674649 |
| A mutagenesis screen for essential plastid biogenesis genes in human malaria parasites. | Tang Y, Meister TR, Walczak M, Pulkoski-Gross MJ, Hari SB, Sauer RT, Amberg-Johnson K, Yeh E | PLoS biology | 30726238 | PLoS Biol | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30726238 |
| Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites. | Boucher MJ, Ghosh S, Zhang L, Lal A, Jang SW, Ju A, Zhang S, Wang X, Ralph SA, Zou J, Elias JE, Yeh E | PLoS biology | 30212465 | PLoS Biol | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30212465 |
| Resistin-like molecule α promotes pathogenic Th17 cell responses and bacterial-induced intestinal inflammation. | Osborne LC, Joyce KL, Alenghat T, Sonnenberg GF, Giacomin PR, Du Y, Bergstrom KS, Vallance BA, Nair MG | Journal of immunology (Baltimore, Md. : 1950) | 23355735 | J Immunol | 2013 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/23355735 |
| Editorial: New tricks for innate lymphoid cells. | Sonnenberg GF | Journal of leukocyte biology | 24179147 | J Leukoc Biol | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/24179147 |
| Transient inhibition of ROR-γt therapeutically limits intestinal inflammation by reducing TH17 cells and preserving group 3 innate lymphoid cells. | Withers DR, Hepworth MR, Wang X, Mackley EC, Halford EE, Dutton EE, Marriott CL, Brucklacher-Waldert V, Veldhoen M, Kelsen J, Baldassano RN, Sonnenberg GF | Nature medicine | 26878233 | Nat Med | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26878233 |
| Emerging roles for antigen presentation in establishing host-microbiome symbiosis. | Bessman NJ, Sonnenberg GF | Immunological reviews | 27319348 | Immunol Rev | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27319348 |
| Regulation of intestinal health and disease by innate lymphoid cells. | Sonnenberg GF | International immunology | 24821261 | Int Immunol | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/24821261 |
| T cell factor 1 is required for group 2 innate lymphoid cell generation. | Yang Q, Monticelli LA, Saenz SA, Chi AW, Sonnenberg GF, Tang J, De Obaldia ME, Bailis W, Bryson JL, Toscano K, Huang J, Haczku A, Pear WS, Artis D, Bhandoola A | Immunity | 23601684 | Immunity | 2013 Apr 18 | https://www.ncbi.nlm.nih.gov/pubmed/23601684 |
| TSLP elicits IL-33-independent innate lymphoid cell responses to promote skin inflammation. | Kim BS, Siracusa MC, Saenz SA, Noti M, Monticelli LA, Sonnenberg GF, Hepworth MR, Van Voorhees AS, Comeau MR, Artis D | Science translational medicine | 23363980 | Sci Transl Med | 2013 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/23363980 |
| Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis. | Alenghat T, Osborne LC, Saenz SA, Kobuley D, Ziegler CG, Mullican SE, Choi I, Grunberg S, Sinha R, Wynosky-Dolfi M, Snyder A, Giacomin PR, Joyce KL, Hoang TB, Bewtra M, Brodsky IE, Sonnenberg GF, Bushman FD, Won KJ, Lazar MA, Artis D | Nature | 24185009 | Nature | 2013 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/24185009 |
| Anti-microbial Functions of Group 3 Innate Lymphoid Cells in Gut-Associated Lymphoid Tissues Are Regulated by G-Protein-Coupled Receptor 183. | Chu C, Moriyama S, Li Z, Zhou L, Flamar AL, Klose CSN, Moeller JB, Putzel GG, Withers DR, Sonnenberg GF, Artis D | Cell reports | 29949760 | Cell Rep | 2018 Jun 26 | https://www.ncbi.nlm.nih.gov/pubmed/29949760 |
| Host-Microbiota Interactions Shape Local and Systemic Inflammatory Diseases. | Grigg JB, Sonnenberg GF | Journal of immunology (Baltimore, Md. : 1950) | 28069751 | J Immunol | 2017 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/28069751 |
| Regulation of inflammation by microbiota interactions with the host. | Blander JM, Longman RS, Iliev ID, Sonnenberg GF, Artis D | Nature immunology | 28722709 | Nat Immunol | 2017 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/28722709 |
| Innate lymphoid cells in the initiation, regulation and resolution of inflammation. | Sonnenberg GF, Artis D | Nature medicine | 26121198 | Nat Med | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/26121198 |
| Group 2 innate lymphoid cells promote beiging of white adipose tissue and limit obesity. | Brestoff JR, Kim BS, Saenz SA, Stine RR, Monticelli LA, Sonnenberg GF, Thome JJ, Farber DL, Lutfy K, Seale P, Artis D | Nature | 25533952 | Nature | 2015 Mar 12 | https://www.ncbi.nlm.nih.gov/pubmed/25533952 |
| Innate lymphoid cells regulate CD4+ T-cell responses to intestinal commensal bacteria. | Hepworth MR, Monticelli LA, Fung TC, Ziegler CG, Grunberg S, Sinha R, Mantegazza AR, Ma HL, Crawford A, Angelosanto JM, Wherry EJ, Koni PA, Bushman FD, Elson CO, Eberl G, Artis D, Sonnenberg GF | Nature | 23698371 | Nature | 2013 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/23698371 |
| Regulation of the adaptive immune system by innate lymphoid cells. | Hepworth MR, Sonnenberg GF | Current opinion in immunology | 24594491 | Curr Opin Immunol | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24594491 |
| Maintaining intestinal health: the genetics and immunology of very early onset inflammatory bowel disease. | Kelsen JR, Baldassano RN, Artis D, Sonnenberg GF | Cellular and molecular gastroenterology and hepatology | 26393237 | Cell Mol Gastroenterol Hepatol | 2015 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/26393237 |
| Epithelial-intrinsic IKKα expression regulates group 3 innate lymphoid cell responses and antibacterial immunity. | Giacomin PR, Moy RH, Noti M, Osborne LC, Siracusa MC, Alenghat T, Liu B, McCorkell KA, Troy AE, Rak GD, Hu Y, May MJ, Ma HL, Fouser LA, Sonnenberg GF, Artis D | The Journal of experimental medicine | 26371187 | J Exp Med | 2015 Sep 21 | https://www.ncbi.nlm.nih.gov/pubmed/26371187 |
| Lymphoid-Tissue-Resident Commensal Bacteria Promote Members of the IL-10 Cytokine Family to Establish Mutualism. | Fung TC, Bessman NJ, Hepworth MR, Kumar N, Shibata N, Kobuley D, Wang K, Ziegler CGK, Goc J, Shima T, Umesaki Y, Sartor RB, Sullivan KV, Lawley TD, Kunisawa J, Kiyono H, Sonnenberg GF | Immunity | 26982365 | Immunity | 2016 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/26982365 |
| Immune tolerance. Group 3 innate lymphoid cells mediate intestinal selection of commensal bacteria-specific CD4⁺ T cells. | Hepworth MR, Fung TC, Masur SH, Kelsen JR, McConnell FM, Dubrot J, Withers DR, Hugues S, Farrar MA, Reith W, Eberl G, Baldassano RN, Laufer TM, Elson CO, Sonnenberg GF | Science (New York, N.Y.) | 25908663 | Science | 2015 May 29 | https://www.ncbi.nlm.nih.gov/pubmed/25908663 |
| Innate lymphoid cells support regulatory T cells in the intestine through interleukin-2. | Zhou L, Chu C, Teng F, Bessman NJ, Goc J, Santosa EK, Putzel GG, Kabata H, Kelsen JR, Baldassano RN, Shah MA, Sockolow RE, Vivier E, Eberl G, Smith KA, Sonnenberg GF | Nature | 30944470 | Nature | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30944470 |
| CCR7-dependent trafficking of RORγ⁺ ILCs creates a unique microenvironment within mucosal draining lymph nodes. | Mackley EC, Houston S, Marriott CL, Halford EE, Lucas B, Cerovic V, Filbey KJ, Maizels RM, Hepworth MR, Sonnenberg GF, Milling S, Withers DR | Nature communications | 25575242 | Nat Commun | 2015 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/25575242 |
| Innate lymphoid cell interactions with microbiota: implications for intestinal health and disease. | Sonnenberg GF, Artis D | Immunity | 23084357 | Immunity | 2012 Oct 19 | https://www.ncbi.nlm.nih.gov/pubmed/23084357 |
| Essential immunologic orchestrators of intestinal homeostasis. | Zhou L, Sonnenberg GF | Science immunology | 29440266 | Sci Immunol | 2018 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/29440266 |
| Anatomical localization of commensal bacteria in immune cell homeostasis and disease. | Fung TC, Artis D, Sonnenberg GF | Immunological reviews | 24942680 | Immunol Rev | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24942680 |
| Group 3 innate lymphoid cells: regulating host-commensal bacteria interactions in inflammation and cancer. | Goc J, Hepworth MR, Sonnenberg GF | International immunology | 26451009 | Int Immunol | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26451009 |
| Metabolic regulation of innate and adaptive lymphocyte effector responses. | Joseph AM, Monticelli LA, Sonnenberg GF | Immunological reviews | 30294971 | Immunol Rev | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/30294971 |
| The role of default network deactivation in cognition and disease. | Anticevic A, Cole MW, Murray JD, Corlett PR, Wang XJ, Krystal JH | Trends in cognitive sciences | 23142417 | Trends Cogn Sci | 2012 Dec | https://www.ncbi.nlm.nih.gov/pubmed/23142417 |
| The impact of NMDA receptor blockade on human working memory-related prefrontal function and connectivity. | Driesen NR, McCarthy G, Bhagwagar Z, Bloch MH, Calhoun VD, D'Souza DC, Gueorguieva R, He G, Leung HC, Ramani R, Anticevic A, Suckow RF, Morgan PT, Krystal JH | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 23856634 | Neuropsychopharmacology | 2013 Dec | https://www.ncbi.nlm.nih.gov/pubmed/23856634 |
| Characterizing thalamo-cortical disturbances in schizophrenia and bipolar illness. | Anticevic A, Cole MW, Repovs G, Murray JD, Brumbaugh MS, Winkler AM, Savic A, Krystal JH, Pearlson GD, Glahn DC | Cerebral cortex (New York, N.Y. : 1991) | 23825317 | Cereb Cortex | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/23825317 |
| Bridging Levels of Understanding in Schizophrenia Through Computational Modeling. | Anticevic A, Murray JD, Barch DM | Clinical psychological science : a journal of the Association for Psychological Science | 25960938 | Clin Psychol Sci | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25960938 |
| Early-course unmedicated schizophrenia patients exhibit elevated prefrontal connectivity associated with longitudinal change. | Anticevic A, Hu X, Xiao Y, Hu J, Li F, Bi F, Cole MW, Savic A, Yang GJ, Repovs G, Murray JD, Wang XJ, Huang X, Lui S, Krystal JH, Gong Q | The Journal of neuroscience : the official journal of the Society for Neuroscience | 25568120 | J Neurosci | 2015 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/25568120 |
| Global connectivity of prefrontal cortex predicts cognitive control and intelligence. | Cole MW, Yarkoni T, Repovs G, Anticevic A, Braver TS | The Journal of neuroscience : the official journal of the Society for Neuroscience | 22745498 | J Neurosci | 2012 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/22745498 |
| Transcriptomics-informed large-scale cortical model captures topography of pharmacological neuroimaging effects of LSD. | Burt JB, Preller KH, Demirtas M, Ji JL, Krystal JH, Vollenweider FX, Anticevic A, Murray JD | eLife | 34313217 | Elife | 2021 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/34313217 |
| Robust hierarchically organized whole-brain patterns of dysconnectivity in schizophrenia spectrum disorders observed after personalized intrinsic network topography. | Dickie EW, Shahab S, Hawco C, Miranda D, Herman G, Argyelan M, Ji JL, Jeyachandra J, Anticevic A, Malhotra AK, Voineskos AN | Human brain mapping | 37605827 | Hum Brain Mapp | 2023 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/37605827 |
| Relationship of resting brain hyperconnectivity and schizophrenia-like symptoms produced by the NMDA receptor antagonist ketamine in humans. | Driesen NR, McCarthy G, Bhagwagar Z, Bloch M, Calhoun V, D'Souza DC, Gueorguieva R, He G, Ramachandran R, Suckow RF, Anticevic A, Morgan PT, Krystal JH | Molecular psychiatry | 23337947 | Mol Psychiatry | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23337947 |
| Mapping the human brain's cortical-subcortical functional network organization. | Ji JL, Spronk M, Kulkarni K, Repovš G, Anticevic A, Cole MW | NeuroImage | 30291974 | Neuroimage | 2019 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/30291974 |
| Understanding the role of thalamic circuits in schizophrenia neuropathology. | Anticevic A | Schizophrenia research | 27939828 | Schizophr Res | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27939828 |
| Rebalancing Altered Computations: Considering the Role of Neural Excitation and Inhibition Balance Across the Psychiatric Spectrum. | Anticevic A, Murray JD | Biological psychiatry | 28434614 | Biol Psychiatry | 2017 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/28434614 |
| Toward understanding thalamocortical dysfunction in schizophrenia through computational models of neural circuit dynamics. | Murray JD, Anticevic A | Schizophrenia research | 27784534 | Schizophr Res | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27784534 |
| Changes in global and thalamic brain connectivity in LSD-induced altered states of consciousness are attributable to the 5-HT2A receptor. | Preller KH, Burt JB, Ji JL, Schleifer CH, Adkinson BD, Stämpfli P, Seifritz E, Repovs G, Krystal JH, Murray JD, Vollenweider FX, Anticevic A | eLife | 30355445 | Elife | 2018 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/30355445 |
| Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. | Schleifer C, Lin A, Kushan L, Ji JL, Yang G, Bearden CE, Anticevic A | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30478034 | J Neurosci | 2019 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/30478034 |
| Association of Thalamic Dysconnectivity and Conversion to Psychosis in Youth and Young Adults at Elevated Clinical Risk. | Anticevic A, Haut K, Murray JD, Repovs G, Yang GJ, Diehl C, McEwen SC, Bearden CE, Addington J, Goodyear B, Cadenhead KS, Mirzakhanian H, Cornblatt BA, Olvet D, Mathalon DH, McGlashan TH, Perkins DO, Belger A, Seidman LJ, Tsuang MT, van Erp TG, Walker EF, Hamann S, Woods SW, Qiu M, Cannon TD | JAMA psychiatry | 26267151 | JAMA Psychiatry | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/26267151 |
| Ketamine induces multiple individually distinct whole-brain functional connectivity signatures. | Moujaes F, Ji JL, Rahmati M, Burt JB, Schleifer C, Adkinson BD, Savic A, Santamauro N, Tamayo Z, Diehl C, Kolobaric A, Flynn M, Rieser N, Fonteneau C, Camarro T, Xu J, Cho Y, Repovs G, Fineberg SK, Morgan PT, Seifritz E, Vollenweider FX, Krystal JH, Murray JD, Preller KH, Anticevic A | eLife | 38629811 | Elife | 2024 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/38629811 |
| Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks. | Purg Suljic N, Kraljic A, Rahmati M, Cho YT, Slana Ozimic A, Murray JD, Anticevic A, Repovs G | bioRxiv : the preprint server for biology | 37662268 | bioRxiv | 2024 Jul 31 | https://www.ncbi.nlm.nih.gov/pubmed/37662268 |
| Cognition-emotion dysinteraction in schizophrenia. | Anticevic A, Corlett PR | Frontiers in psychology | 23091464 | Front Psychol | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/23091464 |
| Multi-task connectivity reveals flexible hubs for adaptive task control. | Cole MW, Reynolds JR, Power JD, Repovs G, Anticevic A, Braver TS | Nature neuroscience | 23892552 | Nat Neurosci | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/23892552 |
| The frontoparietal control system: a central role in mental health. | Cole MW, Repovš G, Anticevic A | The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry | 24622818 | Neuroscientist | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/24622818 |
| Amygdala connectivity differs among chronic, early course, and individuals at risk for developing schizophrenia. | Anticevic A, Tang Y, Cho YT, Repovs G, Cole MW, Savic A, Wang F, Krystal JH, Xu K | Schizophrenia bulletin | 24366718 | Schizophr Bull | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/24366718 |
| Altered global brain signal in schizophrenia. | Yang GJ, Murray JD, Repovs G, Cole MW, Savic A, Glasser MF, Pittenger C, Krystal JH, Wang XJ, Pearlson GD, Glahn DC, Anticevic A | Proceedings of the National Academy of Sciences of the United States of America | 24799682 | Proc Natl Acad Sci U S A | 2014 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/24799682 |
| Connectivity, pharmacology, and computation: toward a mechanistic understanding of neural system dysfunction in schizophrenia. | Anticevic A, Cole MW, Repovs G, Savic A, Driesen NR, Yang G, Cho YT, Murray JD, Glahn DC, Wang XJ, Krystal JH | Frontiers in psychiatry | 24399974 | Front Psychiatry | 2013 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/24399974 |
| Global resting-state functional magnetic resonance imaging analysis identifies frontal cortex, striatal, and cerebellar dysconnectivity in obsessive-compulsive disorder. | Anticevic A, Hu S, Zhang S, Savic A, Billingslea E, Wasylink S, Repovs G, Cole MW, Bednarski S, Krystal JH, Bloch MH, Li CS, Pittenger C | Biological psychiatry | 24314349 | Biol Psychiatry | 2014 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/24314349 |
| Schizophrenia is associated with a pattern of spatial working memory deficits consistent with cortical disinhibition. | Starc M, Murray JD, Santamauro N, Savic A, Diehl C, Cho YT, Srihari V, Morgan PT, Krystal JH, Wang XJ, Repovs G, Anticevic A | Schizophrenia research | 27745755 | Schizophr Res | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/27745755 |
| Searching for Cross-Diagnostic Convergence: Neural Mechanisms Governing Excitation and Inhibition Balance in Schizophrenia and Autism Spectrum Disorders. | Foss-Feig JH, Adkinson BD, Ji JL, Yang G, Srihari VH, McPartland JC, Krystal JH, Murray JD, Anticevic A | Biological psychiatry | 28434615 | Biol Psychiatry | 2017 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/28434615 |
| Impaired Tuning of Neural Ensembles and the Pathophysiology of Schizophrenia: A Translational and Computational Neuroscience Perspective. | Krystal JH, Anticevic A, Yang GJ, Dragoi G, Driesen NR, Wang XJ, Murray JD | Biological psychiatry | 28434616 | Biol Psychiatry | 2017 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/28434616 |
| Amygdala volume is reduced in early course schizophrenia. | Rich AM, Cho YT, Tang Y, Savic A, Krystal JH, Wang F, Xu K, Anticevic A | Psychiatry research. Neuroimaging | 27035063 | Psychiatry Res Neuroimaging | 2016 Apr 30 | https://www.ncbi.nlm.nih.gov/pubmed/27035063 |
| Effects of reward on spatial working memory in schizophrenia. | Cho YT, Lam NH, Starc M, Santamauro N, Savic A, Diehl CK, Schleifer CH, Moujaes F, Srihari VH, Repovs G, Murray JD, Anticevic A | Journal of abnormal psychology | 30335439 | J Abnorm Psychol | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30335439 |
| Effects of Altered Excitation-Inhibition Balance on Decision Making in a Cortical Circuit Model. | Lam NH, Borduqui T, Hallak J, Roque A, Anticevic A, Krystal JH, Wang XJ, Murray JD | The Journal of neuroscience : the official journal of the Society for Neuroscience | 34887320 | J Neurosci | 2022 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/34887320 |
| Developmentally divergent sexual dimorphism in the cortico-striatal-thalamic-cortical psychosis risk pathway. | Jacobs GR, Ameis SH, Ji JL, Viviano JD, Dickie EW, Wheeler AL, Stojanovski S, Anticevic A, Voineskos AN | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 31060043 | Neuropsychopharmacology | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31060043 |
| Linking microcircuit dysfunction to cognitive impairment: effects of disinhibition associated with schizophrenia in a cortical working memory model. | Murray JD, Anticevic A, Gancsos M, Ichinose M, Corlett PR, Krystal JH, Wang XJ | Cerebral cortex (New York, N.Y. : 1991) | 23203979 | Cereb Cortex | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/23203979 |
| N-methyl-D-aspartate receptor antagonist effects on prefrontal cortical connectivity better model early than chronic schizophrenia. | Anticevic A, Corlett PR, Cole MW, Savic A, Gancsos M, Tang Y, Repovs G, Murray JD, Driesen NR, Morgan PT, Xu K, Wang F, Krystal JH | Biological psychiatry | 25281999 | Biol Psychiatry | 2015 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/25281999 |
| In vivo evidence for β2 nicotinic acetylcholine receptor subunit upregulation in smokers as compared with nonsmokers with schizophrenia. | Esterlis I, Ranganathan M, Bois F, Pittman B, Picciotto MR, Shearer L, Anticevic A, Carlson J, Niciu MJ, Cosgrove KP, D'Souza DC | Biological psychiatry | 24360979 | Biol Psychiatry | 2014 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/24360979 |
| Ventral anterior cingulate connectivity distinguished nonpsychotic bipolar illness from psychotic bipolar disorder and schizophrenia. | Anticevic A, Savic A, Repovs G, Yang G, McKay DR, Sprooten E, Knowles EE, Krystal JH, Pearlson GD, Glahn DC | Schizophrenia bulletin | 24782562 | Schizophr Bull | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/24782562 |
| Re-conceptualizing ASD Within a Dimensional Framework: Positive, Negative, and Cognitive Feature Clusters. | Foss-Feig JH, McPartland JC, Anticevic A, Wolf J | Journal of autism and developmental disorders | 26267330 | J Autism Dev Disord | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26267330 |
| Schizophrenia Exhibits Bi-directional Brain-Wide Alterations in Cortico-Striato-Cerebellar Circuits. | Ji JL, Diehl C, Schleifer C, Tamminga CA, Keshavan MS, Sweeney JA, Clementz BA, Hill SK, Pearlson G, Yang G, Creatura G, Krystal JH, Repovs G, Murray J, Winkler A, Anticevic A | Cerebral cortex (New York, N.Y. : 1991) | 31157363 | Cereb Cortex | 2019 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/31157363 |
| Reward and loss incentives improve spatial working memory by shaping trial-by-trial posterior frontoparietal signals. | Cho YT, Moujaes F, Schleifer CH, Starc M, Ji JL, Santamauro N, Adkinson B, Kolobaric A, Flynn M, Krystal JH, Murray JD, Repovs G, Anticevic A | NeuroImage | 35346841 | Neuroimage | 2022 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/35346841 |
| Unique Functional Neuroimaging Signatures of Genetic Versus Clinical High Risk for Psychosis. | Schleifer CH, Chang SE, Amir CM, O'Hora KP, Fung H, Kang JWD, Kushan-Wells L, Daly E, Di Fabio F, Frascarelli M, Gudbrandsen M, Kates WR, Murphy D, Addington J, Anticevic A, Cadenhead KS, Cannon TD, Cornblatt BA, Keshavan M, Mathalon DH, Perkins DO, Stone WS, Walker E, Woods SW, Uddin LQ, Kumar K, Hoftman GD, Bearden CE | Biological psychiatry | 39181389 | Biol Psychiatry | 2025 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/39181389 |
| Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks. | Purg Suljič N, Kraljič A, Rahmati M, Cho YT, Slana Ozimič A, Murray JD, Anticevic A, Repovš G | Cerebral cortex (New York, N.Y. : 1991) | 39214852 | Cereb Cortex | 2024 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/39214852 |
| Electrophysiological Studies of Reception of Facial Communication in Autism Spectrum Disorder and Schizophrenia. | Levy EJ, Foss-Feig J, Isenstein EL, Srihari V, Anticevic A, Naples AJ, McPartland JC | Review journal of autism and developmental disorders | 36568688 | Rev J Autism Dev Disord | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36568688 |
| Myofiber-specific TEAD1 overexpression drives satellite cell hyperplasia and counters pathological effects of dystrophin deficiency. | Southard S, Kim JR, Low S, Tsika RW, Lepper C | eLife | 27725085 | Elife | 2016 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/27725085 |
| Myf5-positive satellite cells contribute to Pax7-dependent long-term maintenance of adult muscle stem cells. | Günther S, Kim J, Kostin S, Lepper C, Fan CM, Braun T | Cell stem cell | 23933088 | Cell Stem Cell | 2013 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/23933088 |
| A series of Cre-ER(T2) drivers for manipulation of the skeletal muscle lineage. | Southard S, Low S, Li L, Rozo M, Harvey T, Fan CM, Lepper C | Genesis (New York, N.Y. : 2000) | 24844572 | Genesis | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/24844572 |
| Distinct and overlapping sarcoma subtypes initiated from muscle stem and progenitor cells. | Blum JM, Añó L, Li Z, Van Mater D, Bennett BD, Sachdeva M, Lagutina I, Zhang M, Mito JK, Dodd LG, Cardona DM, Dodd RD, Williams N, Ma Y, Lepper C, Linardic CM, Mukherjee S, Grosveld GC, Fan CM, Kirsch DG | Cell reports | 24239359 | Cell Rep | 2013 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/24239359 |
| Role of satellite cells versus myofibers in muscle hypertrophy induced by inhibition of the myostatin/activin signaling pathway. | Lee SJ, Huynh TV, Lee YS, Sebald SM, Wilcox-Adelman SA, Iwamori N, Lepper C, Matzuk MM, Fan CM | Proceedings of the National Academy of Sciences of the United States of America | 22869749 | Proc Natl Acad Sci U S A | 2012 Aug 28 | https://www.ncbi.nlm.nih.gov/pubmed/22869749 |
| The satellite cell builds its nest under Notch's guidance. | Lepper C, Low S, Partridge TA | Cell stem cell | 23040471 | Cell Stem Cell | 2012 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/23040471 |
| Germline signals deploy NHR-49 to modulate fatty-acid β-oxidation and desaturation in somatic tissues of C. elegans. | Ratnappan R, Amrit FR, Chen SW, Gill H, Holden K, Ward J, Yamamoto KR, Olsen CP, Ghazi A | PLoS genetics | 25474470 | PLoS Genet | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/25474470 |
| 13C- and 15N-Labeling Strategies Combined with Mass Spectrometry Comprehensively Quantify Phospholipid Dynamics in C. elegans. | Dancy BC, Chen SW, Drechsler R, Gafken PR, Olsen CP | PloS one | 26528916 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26528916 |
| Transaldolase inhibition impairs mitochondrial respiration and induces a starvation-like longevity response in Caenorhabditis elegans. | Bennett CF, Kwon JJ, Chen C, Russell J, Acosta K, Burnaevskiy N, Crane MM, Bitto A, Vander Wende H, Simko M, Pineda V, Rossner R, Wasko BM, Choi H, Chen S, Park S, Jafari G, Sands B, Perez Olsen C, Mendenhall AR, Morgan PG, Kaeberlein M | PLoS genetics | 28355222 | PLoS Genet | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28355222 |
| DAF-16 and TCER-1 Facilitate Adaptation to Germline Loss by Restoring Lipid Homeostasis and Repressing Reproductive Physiology in C. elegans. | Amrit FR, Steenkiste EM, Ratnappan R, Chen SW, McClendon TB, Kostka D, Yanowitz J, Olsen CP, Ghazi A | PLoS genetics | 26862916 | PLoS Genet | 2016 Feb | https://www.ncbi.nlm.nih.gov/pubmed/26862916 |
| HPLC-Based Mass Spectrometry Characterizes the Phospholipid Alterations in Ether-Linked Lipid Deficiency Models Following Oxidative Stress. | Drechsler R, Chen SW, Dancy BC, Mehrabkhani L, Olsen CP | PloS one | 27893806 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27893806 |
| CheShift-2 resolves a local inconsistency between two X-ray crystal structures. | Vila JA, Sue SC, Fraser JS, Scheraga HA, Dyson HJ | Journal of biomolecular NMR | 22945426 | J Biomol NMR | 2012 Oct | https://www.ncbi.nlm.nih.gov/pubmed/22945426 |
| Flexible backbone sampling methods to model and design protein alternative conformations. | Ollikainen N, Smith CA, Fraser JS, Kortemme T | Methods in enzymology | 23422426 | Methods Enzymol | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23422426 |
| Integrative, dynamic structural biology at atomic resolution--it's about time. | van den Bedem H, Fraser JS | Nature methods | 25825836 | Nat Methods | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25825836 |
| Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. | Van Benschoten AH, Afonine PV, Terwilliger TC, Wall ME, Jackson CJ, Sauter NK, Adams PD, Urzhumtsev A, Fraser JS | Acta crystallographica. Section D, Biological crystallography | 26249347 | Acta Crystallogr D Biol Crystallogr | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26249347 |
| Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. | Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, Brunger AT, Soltis SM, Lemke H, Gonzalez A, Sauter NK, Cohen AE, van den Bedem H, Thorne RE, Fraser JS | eLife | 26422513 | Elife | 2015 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/26422513 |
| Measuring and modeling diffuse scattering in protein X-ray crystallography. | Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME | Proceedings of the National Academy of Sciences of the United States of America | 27035972 | Proc Natl Acad Sci U S A | 2016 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/27035972 |
| Genetic interaction mapping informs integrative structure determination of protein complexes. | Braberg H, Echeverria I, Bohn S, Cimermancic P, Shiver A, Alexander R, Xu J, Shales M, Dronamraju R, Jiang S, Dwivedi G, Bogdanoff D, Chaung KK, Hüttenhain R, Wang S, Mavor D, Pellarin R, Schneidman D, Bader JS, Fraser JS, Morris J, Haber JE, Strahl BD, Gross CA, Dai J, Boeke JD, Sali A, Krogan NJ | Science (New York, N.Y.) | 33303586 | Science | 2020 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/33303586 |
| From systems to structure: bridging networks and mechanism. | Fraser JS, Gross JD, Krogan NJ | Molecular cell | 23352243 | Mol Cell | 2013 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/23352243 |
| Systematic functional prioritization of protein posttranslational modifications. | Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ | Cell | 22817900 | Cell | 2012 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/22817900 |
| Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance. | Mavor D, Barlow KA, Asarnow D, Birman Y, Britain D, Chen W, Green EM, Kenner LR, Mensa B, Morinishi LS, Nelson CA, Poss EM, Suresh P, Tian R, Arhar T, Ary BE, Bauer DP, Bergman ID, Brunetti RM, Chio CM, Dai SA, Dickinson MS, Elledge SK, Helsell CVM, Hendel NL, Kang E, Kern N, Khoroshkin MS, Kirkemo LL, Lewis GR, Lou K, Marin WM, Maxwell AM, McTigue PF, Myers-Turnbull D, Nagy TL, Natale AM, Oltion K, Pourmal S, Reder GK, Rettko NJ, Rohweder PJ, Schwarz DMC, Tan SK, Thomas PV, Tibble RW, Town JP, Tsai MK, Ugur FS, Wassarman DR, Wolff AM, Wu TS, Bogdanoff D, Li J, Thorn KS, O'Conchúir S, Swaney DL, Chow ED, Madhani HD, Redding S, Bolon DN, Kortemme T, DeRisi JL, Kampmann M, Fraser JS | Biology open | 30037883 | Biol Open | 2018 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/30037883 |
| Bringing diffuse X-ray scattering into focus. | Wall ME, Wolff AM, Fraser JS | Current opinion in structural biology | 29455056 | Curr Opin Struct Biol | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29455056 |
| Conformational variation of proteins at room temperature is not dominated by radiation damage. | Russi S, González A, Kenner LR, Keedy DA, Fraser JS, van den Bedem H | Journal of synchrotron radiation | 28009548 | J Synchrotron Radiat | 2017 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/28009548 |
| CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. | Cimermancic P, Weinkam P, Rettenmaier TJ, Bichmann L, Keedy DA, Woldeyes RA, Schneidman-Duhovny D, Demerdash ON, Mitchell JC, Wells JA, Fraser JS, Sali A | Journal of molecular biology | 26854760 | J Mol Biol | 2016 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/26854760 |
| Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. | Fischer M, Coleman RG, Fraser JS, Shoichet BK | Nature chemistry | 24950326 | Nat Chem | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24950326 |
| E pluribus unum, no more: from one crystal, many conformations. | Woldeyes RA, Sivak DA, Fraser JS | Current opinion in structural biology | 25113271 | Curr Opin Struct Biol | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25113271 |
| Automated identification of functional dynamic contact networks from X-ray crystallography. | van den Bedem H, Bhabha G, Yang K, Wright PE, Fraser JS | Nature methods | 23913260 | Nat Methods | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/23913260 |
| Protein structural ensembles are revealed by redefining X-ray electron density noise. | Lang PT, Holton JM, Fraser JS, Alber T | Proceedings of the National Academy of Sciences of the United States of America | 24363322 | Proc Natl Acad Sci U S A | 2014 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/24363322 |
| Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR. | Fenwick RB, van den Bedem H, Fraser JS, Wright PE | Proceedings of the National Academy of Sciences of the United States of America | 24474795 | Proc Natl Acad Sci U S A | 2014 Jan 28 | https://www.ncbi.nlm.nih.gov/pubmed/24474795 |
| Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine. | Williams BB, Van Benschoten AH, Cimermancic P, Donia MS, Zimmermann M, Taketani M, Ishihara A, Kashyap PC, Fraser JS, Fischbach MA | Cell host & microbe | 25263219 | Cell Host Microbe | 2014 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/25263219 |
| Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit. | Keedy DA, Fraser JS, van den Bedem H | PLoS computational biology | 26506617 | PLoS Comput Biol | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26506617 |
| High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. | Thomaston JL, Alfonso-Prieto M, Woldeyes RA, Fraser JS, Klein ML, Fiorin G, DeGrado WF | Proceedings of the National Academy of Sciences of the United States of America | 26578770 | Proc Natl Acad Sci U S A | 2015 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/26578770 |
| Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting. | Mavor D, Barlow K, Thompson S, Barad BA, Bonny AR, Cario CL, Gaskins G, Liu Z, Deming L, Axen SD, Caceres E, Chen W, Cuesta A, Gate RE, Green EM, Hulce KR, Ji W, Kenner LR, Mensa B, Morinishi LS, Moss SM, Mravic M, Muir RK, Niekamp S, Nnadi CI, Palovcak E, Poss EM, Ross TD, Salcedo EC, See SK, Subramaniam M, Wong AW, Li J, Thorn KS, Conchúir SÓ, Roscoe BP, Chow ED, DeRisi JL, Kortemme T, Bolon DN, Fraser JS | eLife | 27111525 | Elife | 2016 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/27111525 |
| Lineage-Specific Viral Hijacking of Non-canonical E3 Ubiquitin Ligase Cofactors in the Evolution of Vif Anti-APOBEC3 Activity. | Kane JR, Stanley DJ, Hultquist JF, Johnson JR, Mietrach N, Binning JM, Jónsson SR, Barelier S, Newton BW, Johnson TL, Franks-Skiba KE, Li M, Brown WL, Gunnarsson HI, Adalbjornsdóttir A, Fraser JS, Harris RS, Andrésdóttir V, Gross JD, Krogan NJ | Cell reports | 25981045 | Cell Rep | 2015 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/25981045 |
| From deep TLS validation to ensembles of atomic models built from elemental motions. | Urzhumtsev A, Afonine PV, Van Benschoten AH, Fraser JS, Adams PD | Acta crystallographica. Section D, Biological crystallography | 26249348 | Acta Crystallogr D Biol Crystallogr | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26249348 |
| EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. | Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS | Nature methods | 26280328 | Nat Methods | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26280328 |
| Keep on moving: discovering and perturbing the conformational dynamics of enzymes. | Bhabha G, Biel JT, Fraser JS | Accounts of chemical research | 25539415 | Acc Chem Res | 2015 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/25539415 |
| Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering. | Wall ME, Van Benschoten AH, Sauter NK, Adams PD, Fraser JS, Terwilliger TC | Proceedings of the National Academy of Sciences of the United States of America | 25453071 | Proc Natl Acad Sci U S A | 2014 Dec 16 | https://www.ncbi.nlm.nih.gov/pubmed/25453071 |
| One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. | Fischer M, Shoichet BK, Fraser JS | Chembiochem : a European journal of chemical biology | 26032594 | Chembiochem | 2015 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/26032594 |
| XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction. | Thomaston JL, Woldeyes RA, Nakane T, Yamashita A, Tanaka T, Koiwai K, Brewster AS, Barad BA, Chen Y, Lemmin T, Uervirojnangkoorn M, Arima T, Kobayashi J, Masuda T, Suzuki M, Sugahara M, Sauter NK, Tanaka R, Nureki O, Tono K, Joti Y, Nango E, Iwata S, Yumoto F, Fraser JS, DeGrado WF | Proceedings of the National Academy of Sciences of the United States of America | 28835537 | Proc Natl Acad Sci U S A | 2017 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/28835537 |
| Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. | Biel JT, Thompson MC, Cunningham CN, Corn JE, Fraser JS | Structure (London, England : 1993) | 28416112 | Structure | 2017 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/28416112 |
| Diffuse X-ray scattering to model protein motions. | Wall ME, Adams PD, Fraser JS, Sauter NK | Structure (London, England : 1993) | 24507780 | Structure | 2014 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/24507780 |
| From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. | Braberg H, Jin H, Moehle EA, Chan YA, Wang S, Shales M, Benschop JJ, Morris JH, Qiu C, Hu F, Tang LK, Fraser JS, Holstege FC, Hieter P, Guthrie C, Kaplan CD, Krogan NJ | Cell | 23932120 | Cell | 2013 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/23932120 |
| Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR. | Keedy DA, van den Bedem H, Sivak DA, Petsko GA, Ringe D, Wilson MA, Fraser JS | Structure (London, England : 1993) | 24882744 | Structure | 2014 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/24882744 |
| Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder. | Dellus-Gur E, Elias M, Caselli E, Prati F, Salverda ML, de Visser JA, Fraser JS, Tawfik DS | Journal of molecular biology | 26004540 | J Mol Biol | 2015 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/26004540 |
| Improving lambda red genome engineering in Escherichia coli via rational removal of endogenous nucleases. | Mosberg JA, Gregg CJ, Lajoie MJ, Wang HH, Church GM | PloS one | 22957093 | PLoS One | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22957093 |
| Yeast oligo-mediated genome engineering (YOGE). | DiCarlo JE, Conley AJ, Penttilä M, Jäntti J, Wang HH, Church GM | ACS synthetic biology | 24160921 | ACS Synth Biol | 2013 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/24160921 |
| MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering. | Bonde MT, Klausen MS, Anderson MV, Wallin AI, Wang HH, Sommer MO | Nucleic acids research | 24838561 | Nucleic Acids Res | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24838561 |
| Engineering ecosystems and synthetic ecologies. | Mee MT, Wang HH | Molecular bioSystems | 22722235 | Mol Biosyst | 2012 Oct | https://www.ncbi.nlm.nih.gov/pubmed/22722235 |
| Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis. | Wang HH, Huang PY, Xu G, Haas W, Marblestone A, Li J, Gygi SP, Forster AC, Jewett MC, Church GM | ACS synthetic biology | 22737598 | ACS Synth Biol | 2012 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/22737598 |
| Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection. | Carr PA, Wang HH, Sterling B, Isaacs FJ, Lajoie MJ, Xu G, Church GM, Jacobson JM | Nucleic acids research | 22638574 | Nucleic Acids Res | 2012 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/22638574 |
| Metagenomic engineering of the mammalian gut microbiome in situ. | Ronda C, Chen SP, Cabral V, Yaung SJ, Wang HH | Nature methods | 30643213 | Nat Methods | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30643213 |
| Systematic and synthetic approaches to rewire regulatory networks. | Park J, Wang HH | Current opinion in systems biology | 30637352 | Curr Opin Syst Biol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30637352 |
| Genome-scale promoter engineering by coselection MAGE. | Wang HH, Kim H, Cong L, Jeong J, Bang D, Church GM | Nature methods | 22484848 | Nat Methods | 2012 Jun | https://www.ncbi.nlm.nih.gov/pubmed/22484848 |
| Genomically recoded organisms expand biological functions. | Lajoie MJ, Rovner AJ, Goodman DB, Aerni HR, Haimovich AD, Kuznetsov G, Mercer JA, Wang HH, Carr PA, Mosberg JA, Rohland N, Schultz PG, Jacobson JM, Rinehart J, Church GM, Isaacs FJ | Science (New York, N.Y.) | 24136966 | Science | 2013 Oct 18 | https://www.ncbi.nlm.nih.gov/pubmed/24136966 |
| Multiplex recording of cellular events over time on CRISPR biological tape. | Sheth RU, Yim SS, Wu FL, Wang HH | Science (New York, N.Y.) | 29170279 | Science | 2017 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/29170279 |
| RNA Structural Determinants of Optimal Codons Revealed by MAGE-Seq. | Kelsic ED, Chung H, Cohen N, Park J, Wang HH, Kishony R | Cell systems | 28009265 | Cell Syst | 2016 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/28009265 |
| Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution. | Utrilla J, O'Brien EJ, Chen K, McCloskey D, Cheung J, Wang H, Armenta-Medina D, Feist AM, Palsson BO | Cell systems | 27135538 | Cell Syst | 2016 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/27135538 |
| Programmable CRISPR-Cas transcriptional activation in bacteria. | Ho HI, Fang JR, Cheung J, Wang HH | Molecular systems biology | 32657546 | Mol Syst Biol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32657546 |
| Syntrophic exchange in synthetic microbial communities. | Mee MT, Collins JJ, Church GM, Wang HH | Proceedings of the National Academy of Sciences of the United States of America | 24778240 | Proc Natl Acad Sci U S A | 2014 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/24778240 |
| An Economic Framework of Microbial Trade. | Tasoff J, Mee MT, Wang HH | PloS one | 26222307 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26222307 |
| Proton Pump Inhibitors Alter Specific Taxa in the Human Gastrointestinal Microbiome: A Crossover Trial. | Freedberg DE, Toussaint NC, Chen SP, Ratner AJ, Whittier S, Wang TC, Wang HH, Abrams JA | Gastroenterology | 26164495 | Gastroenterology | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26164495 |
| Prediction of resistance development against drug combinations by collateral responses to component drugs. | Munck C, Gumpert HK, Wallin AI, Wang HH, Sommer MO | Science translational medicine | 25391482 | Sci Transl Med | 2014 Nov 12 | https://www.ncbi.nlm.nih.gov/pubmed/25391482 |
| Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides. | Bonde MT, Kosuri S, Genee HJ, Sarup-Lytzen K, Church GM, Sommer MO, Wang HH | ACS synthetic biology | 24856730 | ACS Synth Biol | 2015 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/24856730 |
| Genome-scale engineering for systems and synthetic biology. | Esvelt KM, Wang HH | Molecular systems biology | 23340847 | Mol Syst Biol | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23340847 |
| Recent progress in engineering human-associated microbiomes. | Yaung SJ, Church GM, Wang HH | Methods in molecular biology (Clifton, N.J.) | 24838875 | Methods Mol Biol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24838875 |
| Manipulating Bacterial Communities by in situ Microbiome Engineering. | Sheth RU, Cabral V, Chen SP, Wang HH | Trends in genetics : TIG | 26916078 | Trends Genet | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/26916078 |
| Improving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics. | Yaung SJ, Deng L, Li N, Braff JL, Church GM, Bry L, Wang HH, Gerber GK | Molecular systems biology | 26148351 | Mol Syst Biol | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26148351 |
| The Role of Genome Accessibility in Transcription Factor Binding in Bacteria. | Gomes AL, Wang HH | PLoS computational biology | 27104615 | PLoS Comput Biol | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/27104615 |
| Genome and sequence determinants governing the expression of horizontally acquired DNA in bacteria. | Gomes ALC, Johns NI, Yang A, Velez-Cortes F, Smillie CS, Smith MB, Alm EJ, Wang HH | The ISME journal | 32514119 | ISME J | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32514119 |
| An Engineered Cas-Transposon System for Programmable and Site-Directed DNA Transpositions. | Chen SP, Wang HH | The CRISPR journal | 31742433 | CRISPR J | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31742433 |
| Programming cells by multiplex genome engineering and accelerated evolution. | Wang HH, Isaacs FJ, Carr PA, Sun ZZ, Xu G, Forest CR, Church GM | Nature | 19633652 | Nature | 2009 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/19633652 |
| A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions. | Stockman VB, Ghamsari L, Lasso G, Honig B, Shapira SD, Wang HH | PloS one | 27936040 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27936040 |
| Transfer of noncoding DNA drives regulatory rewiring in bacteria. | Oren Y, Smith MB, Johns NI, Kaplan Zeevi M, Biran D, Ron EZ, Corander J, Wang HH, Alm EJ, Pupko T | Proceedings of the National Academy of Sciences of the United States of America | 25313052 | Proc Natl Acad Sci U S A | 2014 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/25313052 |
| Principles for designing synthetic microbial communities. | Johns NI, Blazejewski T, Gomes AL, Wang HH | Current opinion in microbiology | 27084981 | Curr Opin Microbiol | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27084981 |
| Metagenomic mining of regulatory elements enables programmable species-selective gene expression. | Johns NI, Gomes ALC, Yim SS, Yang A, Blazejewski T, Smillie CS, Smith MB, Alm EJ, Kosuri S, Wang HH | Nature methods | 30052624 | Nat Methods | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/30052624 |
| Priorities for research on meningococcal disease and the impact of serogroup A vaccination in the African meningitis belt. | Dakar discussion group on priorities for research on epidemic meningococcal disease in Africa, Altmann D, Aseffa A, Bash M, Basta N, Borrow R, Broome C, Caugant D, Clark T, Collard JM, Djingarey M, Goldblatt D, Greenwood B, Griffiths U, Hajjeh R, Hassan-King M, Hugonnet S, Kimball AM, LaForce M, MacLennan C, Maiden MC, Manigart O, Mayer L, Messonnier N, Moisi J, Moore K, Moto DD, Mueller J, Nascimento M, Obaro S, Ouedraogo R, Page AL, Perea W, Pluschke G, Preziosi MP, Sow S, Stephens D, Stuart J, Thomson M, Tiendrebeogo S, Trape JF, Vernet G | Vaccine | 23273967 | Vaccine | 2013 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/23273967 |
| Meningococcal carriage in the African meningitis belt. | MenAfriCar Consortium | Tropical medicine & international health : TM & IH | 23682910 | Trop Med Int Health | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23682910 |
| 4CMenB vaccine effectiveness: reasons for optimism. | Basta NE, Christensen H | Lancet (London, England) | 28100431 | Lancet | 2016 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/28100431 |
| HPV vaccine uptake among overweight and obese US adolescents: An analysis of the National Health and Nutrition Examination Survey (NHANES) 2009-2014. | Sundaram ME, Mason SM, Basta NE | Vaccine | 27020709 | Vaccine | 2016 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/27020709 |
| Animal reservoir, natural and socioeconomic variations and the transmission of hemorrhagic fever with renal syndrome in Chenzhou, China, 2006-2010. | Xiao H, Tian HY, Gao LD, Liu HN, Duan LS, Basta N, Cazelles B, Li XJ, Lin XL, Wu HW, Chen BY, Yang HS, Xu B, Grenfell B | PLoS neglected tropical diseases | 24421910 | PLoS Negl Trop Dis | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24421910 |
| Linking data and models: the importance of statistical analyses to inform models for the transmission dynamics of infections. | Pitzer VE, Basta NE | Epidemiology (Cambridge, Mass.) | 22659545 | Epidemiology | 2012 Jul | https://www.ncbi.nlm.nih.gov/pubmed/22659545 |
| Simulations for designing and interpreting intervention trials in infectious diseases. | Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, DeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela JP, Özler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M | BMC medicine | 29287587 | BMC Med | 2017 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/29287587 |
| Meningococcal B Vaccine during a University Outbreak. | Basta NE, Mahmoud AAF, Borrow R | The New England journal of medicine | 27797310 | N Engl J Med | 2016 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/27797310 |
| Parental awareness of Meningococcal B vaccines and willingness to vaccinate their teens. | Basta NE, Becker AB, Li Q, Nederhoff D | Vaccine | 30587431 | Vaccine | 2019 Jan 21 | https://www.ncbi.nlm.nih.gov/pubmed/30587431 |
| Seasonal dynamics of bacterial meningitis: a time-series analysis. | Paireau J, Chen A, Broutin H, Grenfell B, Basta NE | The Lancet. Global health | 27198841 | Lancet Glob Health | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27198841 |
| Use of serological surveys to generate key insights into the changing global landscape of infectious disease. | Metcalf CJ, Farrar J, Cutts FT, Basta NE, Graham AL, Lessler J, Ferguson NM, Burke DS, Grenfell BT | Lancet (London, England) | 27059886 | Lancet | 2016 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/27059886 |
| Immunogenicity of a Meningococcal B Vaccine during a University Outbreak. | Basta NE, Mahmoud AA, Wolfson J, Ploss A, Heller BL, Hanna S, Johnsen P, Izzo R, Grenfell BT, Findlow J, Bai X, Borrow R | The New England journal of medicine | 27468058 | N Engl J Med | 2016 Jul 21 | https://www.ncbi.nlm.nih.gov/pubmed/27468058 |
| The Diversity of Meningococcal Carriage Across the African Meningitis Belt and the Impact of Vaccination With a Group A Meningococcal Conjugate Vaccine. | MenAfriCar consortium | The Journal of infectious diseases | 25858956 | J Infect Dis | 2015 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/25858956 |
| Higher Tetanus Toxoid Immunity 2 Years After PsA-TT Introduction in Mali. | Basta NE, Borrow R, Berthe A, Onwuchekwa U, Dembélé AT, Almond R, Frankland S, Patel S, Wood D, Nascimento M, Manigart O, Trotter CL, Greenwood B, Sow SO | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 26553691 | Clin Infect Dis | 2015 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/26553691 |
| Meningococcal carriage within households in the African meningitis belt: A longitudinal pilot study. | Basta NE, Berthe A, Keita M, Onwuchekwa U, Tamboura B, Traore A, Hassan-King M, Manigart O, Nascimento M, Stuart JM, Trotter C, Blake J, Carr AD, Gray SJ, Newbold LS, Deng Y, Wolfson J, Halloran ME, Greenwood B, Borrow R, Sow SO | The Journal of infection | 29197599 | J Infect | 2018 Feb | https://www.ncbi.nlm.nih.gov/pubmed/29197599 |
| National Trends in Parental Human Papillomavirus Vaccination Intentions and Reasons for Hesitancy, 2010-2015. | Hanson KE, Koch B, Bonner K, McRee AL, Basta NE | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 29596595 | Clin Infect Dis | 2018 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/29596595 |
| Meningococcal vaccines and protein-energy undernutrition in children in the African meningitis belt. | Sundaram ME, Wolfson J, Osterholm M, Sow S, Ansah PO, Diallo A, Cusick SE | Vaccine | 33223309 | Vaccine | 2020 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/33223309 |
| Methods for identifying Neisseria meningitidis carriers: a multi-center study in the African meningitis belt. | Basta NE, Stuart JM, Nascimento MC, Manigart O, Trotter C, Hassan-King M, Chandramohan D, Sow SO, Berthe A, Bedru A, Tekletsion YK, Collard JM, Jusot JF, Diallo A, Basséne H, Daugla DM, Gamougam K, Hodgson A, Forgor AA, Omotara BA, Gadzama GB, Watkins ER, Rebbetts LS, Diallo K, Weiss NS, Halloran ME, Maiden MC, Greenwood B | PloS one | 24194921 | PLoS One | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24194921 |
| 'What have you HEARD about the HERD?' Does education about local influenza vaccination coverage and herd immunity affect willingness to vaccinate? | Logan J, Nederhoff D, Koch B, Griffith B, Wolfson J, Awan FA, Basta NE | Vaccine | 29789242 | Vaccine | 2018 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/29789242 |
| Population-Level Persistence of Immunity 2 Years After the PsA-TT Mass-Vaccination Campaign in Mali. | Basta NE, Borrow R, Berthe A, Dembélé AT, Onwuchekwa U, Townsend K, Boukary RM, Mabey L, Findlow H, Bai X, Sow SO | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 26553687 | Clin Infect Dis | 2015 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/26553687 |
| Discovery and characterization of Alu repeat sequences via precise local read assembly. | Wildschutte JH, Baron A, Diroff NM, Kidd JM | Nucleic acids research | 26503250 | Nucleic Acids Res | 2015 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/26503250 |
| Distance from sub-Saharan Africa predicts mutational load in diverse human genomes. | Henn BM, Botigué LR, Peischl S, Dupanloup I, Lipatov M, Maples BK, Martin AR, Musharoff S, Cann H, Snyder MP, Excoffier L, Kidd JM, Bustamante CD | Proceedings of the National Academy of Sciences of the United States of America | 26712023 | Proc Natl Acad Sci U S A | 2016 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/26712023 |
| Modeling Human Population Separation History Using Physically Phased Genomes. | Song S, Sliwerska E, Emery S, Kidd JM | Genetics | 28049708 | Genetics | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28049708 |
| Spliced integrated retrotransposed element (SpIRE) formation in the human genome. | Larson PA, Moldovan JB, Jasti N, Kidd JM, Beck CR, Moran JV | PLoS biology | 29505568 | PLoS Biol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29505568 |
| Discovery of unfixed endogenous retrovirus insertions in diverse human populations. | Wildschutte JH, Williams ZH, Montesion M, Subramanian RP, Kidd JM, Coffin JM | Proceedings of the National Academy of Sciences of the United States of America | 27001843 | Proc Natl Acad Sci U S A | 2016 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/27001843 |
| Transcriptome sequencing from diverse human populations reveals differentiated regulatory architecture. | Martin AR, Costa HA, Lappalainen T, Henn BM, Kidd JM, Yee MC, Grubert F, Cann HM, Snyder M, Montgomery SB, Bustamante CD | PLoS genetics | 25121757 | PLoS Genet | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/25121757 |
| A global reference for human genetic variation. | 1000 Genomes Project Consortium, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini JL, McCarthy S, McVean GA, Abecasis GR | Nature | 26432245 | Nature | 2015 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/26432245 |
| Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females. | Poznik GD, Henn BM, Yee MC, Sliwerska E, Euskirchen GM, Lin AA, Snyder M, Quintana-Murci L, Kidd JM, Underhill PA, Bustamante CD | Science (New York, N.Y.) | 23908239 | Science | 2013 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/23908239 |
| The genomic landscape of polymorphic human nuclear mitochondrial insertions. | Dayama G, Emery SB, Kidd JM, Mills RE | Nucleic acids research | 25348406 | Nucleic Acids Res | 2014 Nov 10 | https://www.ncbi.nlm.nih.gov/pubmed/25348406 |
| Resolving complex structural genomic rearrangements using a randomized approach. | Zhao X, Emery SB, Myers B, Kidd JM, Mills RE | Genome biology | 27287201 | Genome Biol | 2016 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/27287201 |
| Y-Chromosome Structural Diversity in the Bonobo and Chimpanzee Lineages. | Oetjens MT, Shen F, Emery SB, Zou Z, Kidd JM | Genome biology and evolution | 27358426 | Genome Biol Evol | 2016 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/27358426 |
| Exome capture from saliva produces high quality genomic and metagenomic data. | Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, Parham P, Hoal EG, Feldman MW, Pollard KS, Wall JD, Bustamante CD, Henn BM | BMC genomics | 24708091 | BMC Genomics | 2014 Apr 4 | https://www.ncbi.nlm.nih.gov/pubmed/24708091 |
| Rapid, Paralog-Sensitive CNV Analysis of 2457 Human Genomes Using QuicK-mer2. | Shen F, Kidd JM | Genes | 32013076 | Genes (Basel) | 2020 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/32013076 |
| Emerging Roles of Alternative Pre-mRNA Splicing Regulation in Neuronal Development and Function. | Norris AD, Calarco JA | Frontiers in neuroscience | 22936897 | Front Neurosci | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22936897 |
| A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types. | Norris AD, Gao S, Norris ML, Ray D, Ramani AK, Fraser AG, Morris Q, Hughes TR, Zhen M, Calarco JA | Molecular cell | 24910101 | Mol Cell | 2014 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/24910101 |
| Regulation of Tissue-Specific Alternative Splicing: C. elegans as a Model System. | Gracida X, Norris AD, Calarco JA | Advances in experimental medicine and biology | 27256389 | Adv Exp Med Biol | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27256389 |
| Heritable genome editing in C. elegans via a CRISPR-Cas9 system. | Friedland AE, Tzur YB, Esvelt KM, Colaiácovo MP, Church GM, Calarco JA | Nature methods | 23817069 | Nat Methods | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23817069 |
| Heritable custom genomic modifications in Caenorhabditis elegans via a CRISPR-Cas9 system. | Tzur YB, Friedland AE, Nadarajan S, Church GM, Calarco JA, Colaiácovo MP | Genetics | 23979579 | Genetics | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23979579 |
| Creating Genome Modifications in C. elegans Using the CRISPR/Cas9 System. | Calarco JA, Friedland AE | Methods in molecular biology (Clifton, N.J.) | 26423968 | Methods Mol Biol | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26423968 |
| An Elongin-Cullin-SOCS Box Complex Regulates Stress-Induced Serotonergic Neuromodulation. | Gracida X, Dion MF, Harris G, Zhang Y, Calarco JA | Cell reports | 29241538 | Cell Rep | 2017 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/29241538 |
| Synthetic Genetic Interaction (CRISPR-SGI) Profiling in Caenorhabditis elegans. | Calarco JA, Norris AD | Bio-protocol | 29552597 | Bio Protoc | 2018 Mar 5 | https://www.ncbi.nlm.nih.gov/pubmed/29552597 |
| CRISPR-mediated genetic interaction profiling identifies RNA binding proteins controlling metazoan fitness. | Norris AD, Gracida X, Calarco JA | eLife | 28718764 | Elife | 2017 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/28718764 |
| Efficient Genome Editing in Caenorhabditis elegans with a Toolkit of Dual-Marker Selection Cassettes. | Norris AD, Kim HM, Colaiácovo MP, Calarco JA | Genetics | 26232410 | Genetics | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26232410 |
| The wtf4 meiotic driver utilizes controlled protein aggregation to generate selective cell death. | Nuckolls NL, Mok AC, Lange JJ, Yi K, Kandola TS, Hunn AM, McCroskey S, Snyder JL, Bravo Núñez MA, McClain M, McKinney SA, Wood C, Halfmann R, Zanders SE | eLife | 33108274 | Elife | 2020 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/33108274 |
| Small-molecule activation of the TRAIL receptor DR5 in human cancer cells. | Wang G, Wang X, Yu H, Wei S, Williams N, Holmes DL, Halfmann R, Naidoo J, Wang L, Li L, Chen S, Harran P, Lei X, Wang X | Nature chemical biology | 23292651 | Nat Chem Biol | 2013 Feb | https://www.ncbi.nlm.nih.gov/pubmed/23292651 |
| Quantifying Nucleation In Vivo Reveals the Physical Basis of Prion-like Phase Behavior. | Khan T, Kandola TS, Wu J, Venkatesan S, Ketter E, Lange JJ, Rodríguez Gama A, Box A, Unruh JR, Cook M, Halfmann R | Molecular cell | 29979963 | Mol Cell | 2018 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/29979963 |
| Neuroendocrine modulation sustains the C. elegans forward motor state. | Lim MA, Chitturi J, Laskova V, Meng J, Findeis D, Wiekenberg A, Mulcahy B, Luo L, Li Y, Lu Y, Hung W, Qu Y, Ho CY, Holmyard D, Ji N, McWhirter R, Samuel AD, Miller DM, Schnabel R, Calarco JA, Zhen M | eLife | 27855782 | Elife | 2016 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/27855782 |
| Quantifying Nucleation In Vivo Reveals the Physical Basis of Prion-like Phase Behavior. | Khan T, Kandola TS, Wu J, Venkatesan S, Ketter E, Lange JJ, Gama AR, Box A, Unruh JR, Cook M, Halfmann R | Molecular cell | 30794793 | Mol Cell | 2019 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/30794793 |
| A glass menagerie of low complexity sequences. | Halfmann R | Current opinion in structural biology | 27258703 | Curr Opin Struct Biol | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27258703 |
| Prion-like polymerization underlies signal transduction in antiviral immune defense and inflammasome activation. | Cai X, Chen J, Xu H, Liu S, Jiang QX, Halfmann R, Chen ZJ | Cell | 24630723 | Cell | 2014 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/24630723 |
| Heritable remodeling of yeast multicellularity by an environmentally responsive prion. | Holmes DL, Lancaster AK, Lindquist S, Halfmann R | Cell | 23540696 | Cell | 2013 Mar 28 | https://www.ncbi.nlm.nih.gov/pubmed/23540696 |
| Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering. | Close DW, Paul CD, Langan PS, Wilce MC, Traore DA, Halfmann R, Rocha RC, Waldo GS, Payne RJ, Rucker JB, Prescott M, Bradbury AR | Proteins | 25287913 | Proteins | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25287913 |
| The UBR-1 ubiquitin ligase regulates glutamate metabolism to generate coordinated motor pattern in Caenorhabditis elegans. | Chitturi J, Hung W, Rahman AMA, Wu M, Lim MA, Calarco J, Baran R, Huang X, Dennis JW, Zhen M | PLoS genetics | 29649217 | PLoS Genet | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29649217 |
| Prion formation by a yeast GLFG nucleoporin. | Halfmann R, Wright JR, Alberti S, Lindquist S, Rexach M | Prion | 22561191 | Prion | 2012 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/22561191 |
| A self-perpetuating repressive state of a viral replication protein blocks superinfection by the same virus. | Zhang XF, Sun R, Guo Q, Zhang S, Meulia T, Halfmann R, Li D, Qu F | PLoS pathogens | 28267773 | PLoS Pathog | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28267773 |
| Detecting and Characterizing Protein Self-Assembly In Vivo by Flow Cytometry. | Venkatesan S, Kandola TS, Rodríguez-Gama A, Box A, Halfmann R | Journal of visualized experiments : JoVE | 31380843 | J Vis Exp | 2019 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/31380843 |
| Penalized unsupervised learning with outliers. | Witten DM | Statistics and its interface | 23875057 | Stat Interface | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23875057 |
| Network Reconstruction From High-Dimensional Ordinary Differential Equations. | Chen S, Shojaie A, Witten DM | Journal of the American Statistical Association | 29618851 | J Am Stat Assoc | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29618851 |
| The Cluster Elastic Net for High-Dimensional Regression With Unknown Variable Grouping. | Witten DM, Shojaie A, Zhang F | Technometrics : a journal of statistics for the physical, chemical, and engineering sciences | 24817772 | Technometrics | 2014 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/24817772 |
| Inferring clonal composition from multiple sections of a breast cancer. | Zare H, Wang J, Hu A, Weber K, Smith J, Nickerson D, Song C, Witten D, Blau CA, Noble WS | PLoS computational biology | 25010360 | PLoS Comput Biol | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25010360 |
| Sparse Biclustering of Transposable Data. | Tan KM, Witten DM | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 25364221 | J Comput Graph Stat | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25364221 |
| On the assessment of statistical significance of three-dimensional colocalization of sets of genomic elements. | Witten DM, Noble WS | Nucleic acids research | 22266657 | Nucleic Acids Res | 2012 May | https://www.ncbi.nlm.nih.gov/pubmed/22266657 |
| EXACT SPIKE TRAIN INFERENCE VIA ℓ(0) OPTIMIZATION. | Jewell S, Witten D | The annals of applied statistics | 30627301 | Ann Appl Stat | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30627301 |
| Data-adaptive additive modeling. | Petersen A, Witten D | Statistics in medicine | 30010200 | Stat Med | 2019 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/30010200 |
| Replicates in high dimensions, with applications to latent variable graphical models. | Tan KM, Ning Y, Witten DM, Liu H | Biometrika | 28736452 | Biometrika | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28736452 |
| A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex. | de Vries SEJ, Lecoq JA, Buice MA, Groblewski PA, Ocker GK, Oliver M, Feng D, Cain N, Ledochowitsch P, Millman D, Roll K, Garrett M, Keenan T, Kuan L, Mihalas S, Olsen S, Thompson C, Wakeman W, Waters J, Williams D, Barber C, Berbesque N, Blanchard B, Bowles N, Caldejon SD, Casal L, Cho A, Cross S, Dang C, Dolbeare T, Edwards M, Galbraith J, Gaudreault N, Gilbert TL, Griffin F, Hargrave P, Howard R, Huang L, Jewell S, Keller N, Knoblich U, Larkin JD, Larsen R, Lau C, Lee E, Lee F, Leon A, Li L, Long F, Luviano J, Mace K, Nguyen T, Perkins J, Robertson M, Seid S, Shea-Brown E, Shi J, Sjoquist N, Slaughterbeck C, Sullivan D, Valenza R, White C, Williford A, Witten DM, Zhuang J, Zeng H, Farrell C, Ng L, Bernard A, Phillips JW, Reid RC, Koch C | Nature neuroscience | 31844315 | Nat Neurosci | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31844315 |
| Flexible and Interpretable Models for Survival Data. | Wu J, Witten D | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 32704224 | J Comput Graph Stat | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/32704224 |
| Molecular signatures from omics data: from chaos to consensus. | Sung J, Wang Y, Chandrasekaran S, Witten DM, Price ND | Biotechnology journal | 22528809 | Biotechnol J | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22528809 |
| Nearly assumptionless screening for the mutually-exciting multivariate Hawkes process. | Chen S, Witten D, Shojaie A | Electronic journal of statistics | 28845209 | Electron J Stat | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28845209 |
| Are clusterings of multiple data views independent? | Gao LL, Bien J, Witten D | Biostatistics (Oxford, England) | 30753304 | Biostatistics | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/30753304 |
| SCALPEL: EXTRACTING NEURONS FROM CALCIUM IMAGING DATA. | Petersen A, Simon N, Witten D | The annals of applied statistics | 30510612 | Ann Appl Stat | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30510612 |
| Discussion on Covariate-assisted ranking and screening for large-scale two-sample inference. | Yu G, Bien J, Witten D | Journal of the Royal Statistical Society. Series B, Statistical methodology | 31178656 | J R Stat Soc Series B Stat Methodol | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/31178656 |
| Hypothesis testing for differentially correlated features. | Sheng E, Witten D, Zhou XH | Biostatistics (Oxford, England) | 27044327 | Biostatistics | 2016 Oct | https://www.ncbi.nlm.nih.gov/pubmed/27044327 |
| MODELING MICROBIAL ABUNDANCES AND DYSBIOSIS WITH BETA-BINOMIAL REGRESSION. | Martin BD, Witten D, Willis AD | The annals of applied statistics | 32983313 | Ann Appl Stat | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32983313 |
| Structured Learning of Gaussian Graphical Models. | Mohan K, Chung MJ, Han S, Witten D, Lee SI, Fazel M | Advances in neural information processing systems | 25360066 | Adv Neural Inf Process Syst | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/25360066 |
| Node-Based Learning of Multiple Gaussian Graphical Models. | Mohan K, London P, Fazel M, Witten D, Lee SI | Journal of machine learning research : JMLR | 25309137 | J Mach Learn Res | 2014 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/25309137 |
| Learning Graphical Models With Hubs. | Tan KM, London P, Mohan K, Lee SI, Fazel M, Witten D | Journal of machine learning research : JMLR | 25620891 | J Mach Learn Res | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25620891 |
| A general framework for estimating the relative pathogenicity of human genetic variants. | Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J | Nature genetics | 24487276 | Nat Genet | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24487276 |
| Testing for association in multiview network data. | Gao LL, Witten D, Bien J | Biometrics | 33792914 | Biometrics | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33792914 |
| Graph Estimation with Joint Additive Models. | Voorman A, Shojaie A, Witten D | Biometrika | 25013234 | Biometrika | 2014 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/25013234 |
| The cluster graphical lasso for improved estimation of Gaussian graphical models. | Tan KM, Witten D, Shojaie A | Computational statistics & data analysis | 25642008 | Comput Stat Data Anal | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25642008 |
| Selection and estimation for mixed graphical models. | Chen S, Witten DM, Shojaie A | Biometrika | 27625437 | Biometrika | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/27625437 |
| Adaptive nonparametric regression with the K-nearest neighbour fused lasso. | Madrid Padilla OH, Sharpnack J, Chen Y, Witten DM | Biometrika | 32454528 | Biometrika | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32454528 |
| Fast nonconvex deconvolution of calcium imaging data. | Jewell SW, Hocking TD, Fearnhead P, Witten DM | Biostatistics (Oxford, England) | 30753436 | Biostatistics | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/30753436 |
| Discussion of 'Gene hunting with hidden Markov model knockoffs'. | Jewell SW, Witten DM | Biometrika | 30799876 | Biometrika | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30799876 |
| Controlling costs: Feature selection on a budget. | Yu G, Witten D, Bien J | Stat | 38250253 | Stat | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38250253 |
| Massively parallel functional dissection of mammalian enhancers in vivo. | Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J | Nature biotechnology | 22371081 | Nat Biotechnol | 2012 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/22371081 |
| Statistical properties of convex clustering. | Tan KM, Witten D | Electronic journal of statistics | 27617051 | Electron J Stat | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/27617051 |
| The joint graphical lasso for inverse covariance estimation across multiple classes. | Danaher P, Wang P, Witten DM | Journal of the Royal Statistical Society. Series B, Statistical methodology | 24817823 | J R Stat Soc Series B Stat Methodol | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24817823 |
| Pathway Graphical Lasso. | Grechkin M, Fazel M, Witten D, Lee SI | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence | 26167394 | Proc AAAI Conf Artif Intell | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26167394 |
| Multi-scale network regression for brain-phenotype associations. | Xia CH, Ma Z, Cui Z, Bzdok D, Thirion B, Bassett DS, Satterthwaite TD, Shinohara RT, Witten DM | Human brain mapping | 32216125 | Hum Brain Mapp | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32216125 |
| Testing for a Change in Mean After Changepoint Detection. | Jewell S, Fearnhead P, Witten D | Journal of the Royal Statistical Society. Series B, Statistical methodology | 36419504 | J R Stat Soc Series B Stat Methodol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36419504 |
| Forniceal deep brain stimulation rescues hippocampal memory in Rett syndrome mice. | Hao S, Tang B, Wu Z, Ure K, Sun Y, Tao H, Gao Y, Patel AJ, Curry DJ, Samaco RC, Zoghbi HY, Tang J | Nature | 26469053 | Nature | 2015 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/26469053 |
| Combinatorial therapy discovery using mixed integer linear programming. | Pang K, Wan YW, Choi WT, Donehower LA, Sun J, Pant D, Liu Z | Bioinformatics (Oxford, England) | 24463180 | Bioinformatics | 2014 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/24463180 |
| Genetic rodent models of brain disorders: Perspectives on experimental approaches and therapeutic strategies. | McGraw CM, Ward CS, Samaco RC | American journal of medical genetics. Part C, Seminars in medical genetics | 28910526 | Am J Med Genet C Semin Med Genet | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28910526 |
| Loss of MeCP2 Causes Urological Dysfunction and Contributes to Death by Kidney Failure in Mouse Models of Rett Syndrome. | Ward CS, Huang TW, Herrera JA, Samaco RC, Pitcher MR, Herron A, Skinner SA, Kaufmann WE, Glaze DG, Percy AK, Neul JL | PloS one | 27828991 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27828991 |
| Loss of MeCP2 in the rat models regression, impaired sociability and transcriptional deficits of Rett syndrome. | Veeraragavan S, Wan YW, Connolly DR, Hamilton SM, Ward CS, Soriano S, Pitcher MR, McGraw CM, Huang SG, Green JR, Yuva LA, Liang AJ, Neul JL, Yasui DH, LaSalle JM, Liu Z, Paylor R, Samaco RC | Human molecular genetics | 27365498 | Hum Mol Genet | 2016 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/27365498 |
| Otud7a Knockout Mice Recapitulate Many Neurological Features of 15q13.3 Microdeletion Syndrome. | Yin J, Chen W, Chao ES, Soriano S, Wang L, Wang W, Cummock SE, Tao H, Pang K, Liu Z, Pereira FA, Samaco RC, Zoghbi HY, Xue M, Schaaf CP | American journal of human genetics | 29395075 | Am J Hum Genet | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29395075 |
