NIH Director's Early Independence Award
NIH Director's Early Independence Award
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date |
|---|---|---|---|---|---|
| Neural effects of TMS trains on the human prefrontal cortex. | Ross JM, Cline CC, Sarkar M, Truong J, Keller CJ | bioRxiv : the preprint server for biology | 36778457 | bioRxiv | 2023 Nov 22 |
| Reliability and Validity of Transcranial Magnetic Stimulation-Electroencephalography Biomarkers. | Parmigiani S, Ross JM, Cline CC, Minasi CB, Gogulski J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36894435 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Aug |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | Cerebral cortex (New York, N.Y. : 1991) | 38596882 | Cereb Cortex | 2024 Apr 1 |
| Direct cortical stimulation induces short-term plasticity of neural oscillations in humans. | Munot S, Kim N, Huang Y, Keller CJ | bioRxiv : the preprint server for biology | 38014071 | bioRxiv | 2023 Nov 17 |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 36711689 | bioRxiv | 2023 Nov 20 |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 37732239 | bioRxiv | 2023 Sep 5 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | bioRxiv : the preprint server for biology | 37645954 | bioRxiv | 2023 Nov 19 |
| Sensory Entrained TMS (seTMS) enhances motor cortex excitability. | Ross JM, Forman L, Gogulski J, Hassan U, Cline CC, Parmigiani S, Truong J, Hartford JW, Chen NF, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | bioRxiv : the preprint server for biology | 39651225 | bioRxiv | 2024 Nov 27 |
| Dorsolateral prefrontal cortex TMS evokes responses in the subgenual anterior cingulate cortex: Evidence from human intracranial EEG. | Trapp NT, Liu X, Li Z, Bruss J, Keller CJ, Boes AD, Jiang J | bioRxiv : the preprint server for biology | 39763715 | bioRxiv | 2024 Dec 26 |
| Global connectivity and local excitability changes underlie antidepressant effects of repetitive transcranial magnetic stimulation. | Eshel N, Keller CJ, Wu W, Jiang J, Mills-Finnerty C, Huemer J, Wright R, Fonzo GA, Ichikawa N, Carreon D, Wong M, Yee A, Shpigel E, Guo Y, McTeague L, Maron-Katz A, Etkin A | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32053828 | Neuropsychopharmacology | 2020 May |
| Personalized Repetitive Transcranial Magnetic Stimulation for Depression. | Gogulski J, Ross JM, Talbot A, Cline CC, Donati FL, Munot S, Kim N, Gibbs C, Bastin N, Yang J, Minasi C, Sarkar M, Truong J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36792455 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Apr |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology | 38865780 | Clin Neurophysiol | 2024 Aug |
| Theta-burst direct electrical stimulation remodels human brain networks. | Huang Y, Zelmann R, Hadar P, Dezha-Peralta J, Richardson RM, Williams ZM, Cash SS, Keller CJ, Paulk AC | Nature communications | 39143083 | Nat Commun | 2024 Aug 14 |
| Experimental suppression of transcranial magnetic stimulation-electroencephalography sensory potentials. | Ross JM, Sarkar M, Keller CJ | Human brain mapping | 35770956 | Hum Brain Mapp | 2022 Dec 1 |
| Editorial: Inter- and Intra-subject Variability in Brain Imaging and Decoding. | Wei CS, Keller CJ, Li J, Lin YP, Nakanishi M, Wagner J, Wu W, Zhang Y, Jung TP | Frontiers in computational neuroscience | 34912203 | Front Comput Neurosci | 2021 |
| Real-time optimization to enhance noninvasive cortical excitability assessment in the human dorsolateral prefrontal cortex. | Parmigiani S, Cline CC, Sarkar M, Forman L, Truong J, Ross JM, Gogulski J, Keller CJ | bioRxiv : the preprint server for biology | 38853941 | bioRxiv | 2024 May 31 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | Brain stimulation | 38821396 | Brain Stimul | 2024 May-Jun |
| Combining Sampling Methods with Attractor Dynamics in Spiking Models of Head-Direction Systems. | Pjanovic V, Zavatone-Veth J, Masset P, Keemink S, Nardin M | bioRxiv : the preprint server for biology | 40060526 | bioRxiv | 2025 Feb 26 |
| Psychometrics of the Children's Report of Parental Behavior Inventory among caregivers and youth with HIV. | Rodriguez VJ, Kendall AD, Cohen MH, Nsanzimana S, Ingabire C, Remera E, Donenberg G | Journal of family psychology : JFP : journal of the Division of Family Psychology of the American Psychological Association (Division 43) | 38451718 | J Fam Psychol | 2024 Mar 7 |
| Altered States and Social Bonds: Effects of MDMA and Serotonergic Psychedelics on Social Behavior as a Mechanism Underlying Substance-Assisted Therapy. | Schmid Y, Bershad AK | Biological psychiatry. Cognitive neuroscience and neuroimaging | 38341085 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2024 May |
| The 3,4-methylenedioxymethamphetamine enhances early visual processing for salient socio-emotional stimuli. | Haggarty CJ, Bershad AK, Kumar MK, Lee R, de Wit H | The European journal of neuroscience | 38637983 | Eur J Neurosci | 2024 Jun |
| MDMA enhances positive affective responses to social feedback. | Bershad AK, Hsu DT, de Wit H | Journal of psychopharmacology (Oxford, England) | 38279662 | J Psychopharmacol | 2024 Mar |
| Quantized multi-task learning for context-specific representations of gene network dynamics. | Chen H, Venkatesh MS, Ortega JG, Mahesh SV, Nandi TN, Madduri RK, Pelka K, Theodoris CV | bioRxiv : the preprint server for biology | 39229018 | bioRxiv | 2024 Aug 19 |
| Multiplex generation and single-cell analysis of structural variants in mammalian genomes. | Pinglay S, Lalanne JB, Daza RM, Kottapalli S, Quaisar F, Koeppel J, Garge RK, Li X, Lee DS, Shendure J | Science (New York, N.Y.) | 39883753 | Science | 2025 Jan 31 |
| Multiplex generation and single cell analysis of structural variants in a mammalian genome. | Pinglay S, Lalanne JB, Daza RM, Koeppel J, Li X, Lee DS, Shendure J | bioRxiv : the preprint server for biology | 38405830 | bioRxiv | 2024 Feb 12 |
| Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières Syndrome neuropathology. | Nemec KM, Uy G, Chaluvadi VS, Purnell FS, Elfayoumi B, O'Brien CA, Aisenberg WH, Lombroso SI, Guo X, Blank N, Oon CH, Yaqoob F, Temsamrit B, Rawat P, Thaiss CA, Wang Q, Bennett ML, Bennett FC | bioRxiv : the preprint server for biology | 39345609 | bioRxiv | 2024 Sep 20 |
| The prototypical interferonopathy: Aicardi-Goutières syndrome from bedside to bench. | Hofer MJ, Modesti N, Coufal NG, Wang Q, Sase S, Miner JJ, Vanderver A, Bennett ML | Immunological reviews | 39473130 | Immunol Rev | 2024 Oct |
| ComBatLS: A location- and scale-preserving method for multi-site image harmonization. | Gardner M, Shinohara RT, Bethlehem RAI, Romero-Garcia R, Warrier V, Dorfschmidt L, Lifespan Brain Chart Consortium, Shanmugan S, Thompson P, Seidlitz J, Alexander-Bloch AF, Chen AA | bioRxiv : the preprint server for biology | 39131292 | bioRxiv | 2024 Jul 30 |
| Reproducible Sex Differences in Personalized Functional Network Topography in Youth. | Keller AS, Sun KY, Francisco A, Robinson H, Beydler E, Bassett DS, Cieslak M, Cui Z, Davatzikos C, Fan Y, Gardner M, Kishton R, Kornfield SL, Larsen B, Li H, Linder I, Pines A, Pritschet L, Raznahan A, Roalf DR, Seidlitz J, Shafiei G, Shinohara RT, Wolf DH, Alexander-Bloch A, Satterthwaite TD, Shanmugan S | bioRxiv : the preprint server for biology | 39386637 | bioRxiv | 2024 Sep 29 |
| Generalizable Links Between Borderline Personality Traits and Functional Connectivity. | Shafiei G, Keller AS, Bertolero M, Shanmugan S, Bassett DS, Chen AA, Covitz S, Houghton A, Luo A, Mehta K, Salo T, Shinohara RT, Fair D, Hallquist MN, Satterthwaite TD | Biological psychiatry | 38460580 | Biol Psychiatry | 2024 Sep 15 |
| Toward personalized clinical interventions for perinatal depression: Leveraging precision functional mapping. | Pritschet L, Beydler E, Shanmugan S | Science advances | 40043108 | Sci Adv | 2025 Mar 7 |
| A spatiotemporal map of co-receptor signaling networks underlying B cell activation. | Susa KJ, Bradshaw GA, Eisert RJ, Schilling CM, Kalocsay M, Blacklow SC, Kruse AC | Cell reports | 38850533 | Cell Rep | 2024 Jun 25 |
| Tetraspanins: structure, dynamics, and principles of partner-protein recognition. | Susa KJ, Kruse AC, Blacklow SC | Trends in cell biology | 37783654 | Trends Cell Biol | 2024 Jun |
| UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability. | Tsai JM, Aguirre JD, Li YD, Brown J, Focht V, Kater L, Kempf G, Sandoval B, Schmitt S, Rutter JC, Galli P, Sandate CR, Cutler JA, Zou C, Donovan KA, Lumpkin RJ, Cavadini S, Park PMC, Sievers Q, Hatton C, Ener E, Regalado BD, Sperling MT, Słabicki M, Kim J, Zon R, Zhang Z, Miller PG, Belizaire R, Sperling AS, Fischer ES, Irizarry R, Armstrong SA, Thomä NH, Ebert BL | Molecular cell | 37478846 | Mol Cell | 2023 Aug 3 |
| Flow Cytometry Analysis of Microglial Phenotypes in the Murine Brain During Aging and Disease. | Cox JEJ, Pham KD, Keck AW, Wright Z, Thomas MA, Freeman WM, Ocañas SR | Bio-protocol | 38948260 | Bio Protoc | 2024 Jun 20 |
| Role of Estrogen Receptor α in Aging and Chronic Disease. | Isola JVV, Ko S, Ocañas SR, Stout MB | Advances in geriatric medicine and research | 37425648 | Adv Geriatr Med Res | 2023 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Hoolehan W, Kulpa AM, Stanford DR, Freeman WM | Epigenetics & chromatin | 37953264 | Epigenetics Chromatin | 2023 Nov 13 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley KB, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | GeroScience | 37393197 | Geroscience | 2023 Oct |
| Specificity and efficiency of tamoxifen-mediated Cre induction is equivalent regardless of age. | Kellogg CM, Pham K, Ko S, Cox JEJ, Machalinski AH, Stout MB, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | iScience | 38058312 | iScience | 2023 Dec 15 |
| Chromosomal and gonadal factors regulate microglial sex effects in the aging brain. | Ocañas SR, Ansere VA, Kellogg CM, Isola JVV, Chucair-Elliott AJ, Freeman WM | Brain research bulletin | 36804773 | Brain Res Bull | 2023 Apr |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Thomas MA, Wright Z, Chucair-Elliott AJ, Freeman WM | Journal of neuroinflammation | 37587511 | J Neuroinflammation | 2023 Aug 16 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Stanford DR, Freeman WM | bioRxiv : the preprint server for biology | 37333391 | bioRxiv | 2023 Jun 7 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley K, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | bioRxiv : the preprint server for biology | 36945372 | bioRxiv | 2023 Jun 2 |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Chucair-Elliott AJ, Freeman WM | bioRxiv : the preprint server for biology | 36945656 | bioRxiv | 2023 Jun 1 |
| Leveraging individual power to improve racial equity in academia. | Monari PK, Hammond ER, Malone CL, Cuarenta A, Hiura LC, Wallace KJ, Taylor L, Pradhan DS | Hormones and behavior | 37030195 | Horm Behav | 2023 Jun |
| Prairie vole pair bonding and plasticity of the social brain. | Hiura LC, Donaldson ZR | Trends in neurosciences | 36369029 | Trends Neurosci | 2023 Apr |
| A universal method for the purification of C2H2 zinc finger arrays. | Liang J, Azubel M, Wang G, Nie Y, Kornberg RD, Beel AJ, Mattei PJ | PloS one | 39903729 | PLoS One | 2025 |
| Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening. | Tan J, Shenker-Tauris N, Rodriguez-Hernaez J, Wang E, Sakellaropoulos T, Boccalatte F, Thandapani P, Skok J, Aifantis I, Fenyö D, Xia B, Tsirigos A | Nature biotechnology | 36624151 | Nat Biotechnol | 2023 Aug |
| On the genetic basis of tail-loss evolution in humans and apes. | Xia B, Zhang W, Zhao G, Zhang X, Bai J, Brosh R, Wudzinska A, Huang E, Ashe H, Ellis G, Pour M, Zhao Y, Coelho C, Zhu Y, Miller A, Dasen JS, Maurano MT, Kim SY, Boeke JD, Yanai I | Nature | 38418917 | Nature | 2024 Feb |
| Cellular dynamics in pig-to-human kidney xenotransplantation. | Pan W, Zhang W, Zheng B, Camellato BR, Stern J, Lin Z, Khodadadi-Jamayran A, Kim J, Sommer P, Khalil K, Weldon E, Bai J, Zhu Y, Meyn P, Heguy A, Mangiola M, Griesemer A, Keating BJ, Montgomery RA, Xia B, Boeke JD | Med (New York, N.Y.) | 38776915 | Med | 2024 Aug 9 |
| Experience From an Early Exposure Education Program in Radiation Oncology for High School and Undergraduate Students. | Tam A, Ladbury C, Glaser S, Amini A, Chen YJ, Li YR | Practical radiation oncology | 38810923 | Pract Radiat Oncol | 2024 Nov-Dec |
| Grade 5 Radiation Necrosis After Whole-Brain Radiation Therapy. | Tam A, Li YR, Williams T, Yoon S | Practical radiation oncology | 38431371 | Pract Radiat Oncol | 2024 Mar-Apr |
| Explainable Artificial Intelligence to Identify Dosimetric Predictors of Toxicity in Patients with Locally Advanced Non-Small Cell Lung Cancer: A Secondary Analysis of RTOG 0617. | Ladbury C, Li R, Danesharasteh A, Ertem Z, Tam A, Liu J, Hao C, Li R, McGee H, Sampath S, Williams T, Glaser S, Khasawneh M, Liao Z, Lee P, Ryckman J, Shaikh P, Amini A | International journal of radiation oncology, biology, physics | 37406826 | Int J Radiat Oncol Biol Phys | 2023 Dec 1 |
| Moving the Needle Forward in Genomically-Guided Precision Radiation Treatment. | Tam A, Mercier BD, Thomas RM, Tizpa E, Wong IG, Shi J, Garg R, Hampel H, Gray SW, Williams T, Bazan JG, Li YR | Cancers | 38001574 | Cancers (Basel) | 2023 Nov 7 |
| Dietary Interventions in Cancer Treatment and Response: A Comprehensive Review. | Mercier BD, Tizpa E, Philip EJ, Feng Q, Huang Z, Thomas RM, Pal SK, Dorff TB, Li YR | Cancers | 36291933 | Cancers (Basel) | 2022 Oct 20 |
| Stem-cell states converge in multistage cutaneous squamous cell carcinoma development. | Taylor MA, Kandyba E, Halliwill K, Delrosario R, Khoroshkin M, Goodarzi H, Quigley D, Li YR, Wu D, Bollam SR, Mirzoeva OK, Akhurst RJ, Balmain A | Science (New York, N.Y.) | 38815020 | Science | 2024 May 31 |
| Ignorance is Bliss? A Case of Incidental Discovery of ATM Mutation in Prostate Cancer. | Tam A, Li YR | International journal of radiation oncology, biology, physics | 38049230 | Int J Radiat Oncol Biol Phys | 2024 Jan 1 |
| Intermittent fasting interventions to leverage metabolic and circadian mechanisms for cancer treatment and supportive care outcomes. | Kalam F, James DL, Li YR, Coleman MF, Kiesel VA, Cespedes Feliciano EM, Hursting SD, Sears DD, Kleckner AS | Journal of the National Cancer Institute. Monographs | 37139971 | J Natl Cancer Inst Monogr | 2023 May 4 |
| Key takeaways for knowledge expansion of early-career scientists conducting Transdisciplinary Research in Energetics and Cancer (TREC): a report from the TREC Training Workshop 2022. | Kung CP, Skiba MB, Crosby EJ, Gorzelitz J, Kennedy MA, Kerr BA, Li YR, Nash S, Potiaumpai M, Kleckner AS, James DL, Coleman MF, Fairman CM, Galván GC, Garcia DO, Gordon MJ, His M, Hornbuckle LM, Kim SY, Kim TH, Kumar A, Mahé M, McDonnell KK, Moore J, Oh S, Sun X, Irwin ML | Journal of the National Cancer Institute. Monographs | 37139978 | J Natl Cancer Inst Monogr | 2023 May 4 |
| Wildfires increasingly threaten oil and gas wells in the western United States with disproportionate impacts on marginalized populations. | González DJX, Morello-Frosch R, Liu Z, Willis MD, Feng Y, McKenzie LM, Steiger BB, Wang J, Deziel NC, Casey JA | One earth (Cambridge, Mass.) | 39036466 | One Earth | 2024 Jun 21 |
| It's electric! An environmental equity perspective on the lifecycle of our energy sources. | Willis MD, Cushing LJ, Buonocore JJ, Deziel NC, Casey JA | Environmental epidemiology (Philadelphia, Pa.) | 37064423 | Environ Epidemiol | 2023 Apr |
| Evaluating participant engagement in a preconception cohort study in relation to the Dobbs decision. | Willis MD, Hoffman MN, Wang TR, Sabbath EL, Kuriyama AS, Wesselink AK, Wise LA | Paediatric and perinatal epidemiology | 38666636 | Paediatr Perinat Epidemiol | 2024 Sep |
| Residential Proximity to Oil and Gas Development and Mental Health in a North American Preconception Cohort Study: 2013-2023. | Willis MD, Campbell EJ, Selbe S, Koenig MR, Gradus JL, Nillni YI, Casey JA, Deziel NC, Hatch EE, Wesselink AK, Wise LA | American journal of public health | 38991173 | Am J Public Health | 2024 Sep |
| Evolutionary-Scale Enzymology Enables Biochemical Constant Prediction Across a Multi-Peaked Catalytic Landscape. | Muir DF, Asper GPR, Notin P, Posner JA, Marks DS, Keiser MJ, Pinney MM | bioRxiv : the preprint server for biology | 39484523 | bioRxiv | 2024 Oct 25 |
| Kir4.2 mediates proximal potassium effects on glutaminase activity and kidney injury. | Terker AS, Zhang Y, Arroyo JP, Cao S, Wang S, Fan X, Denton JS, Zhang MZ, Harris RC | Cell reports | 36543132 | Cell Rep | 2022 Dec 20 |
| Insulin-regulated aminopeptidase is required for water excretion in response to acute hypotonic stress. | Zuchowski Y, Carty J, Terker AS, Bock F, Trapani JB, Bhave G, Watts JA, Keller S, Zhang M, Zent R, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 36995926 | Am J Physiol Renal Physiol | 2023 Jun 1 |
| Low potassium activation of proximal mTOR/AKT signaling is mediated by Kir4.2. | Zhang Y, Bock F, Ferdaus M, Arroyo JP, L Rose K, Patel P, Denton JS, Delpire E, Weinstein AM, Zhang MZ, Harris RC, Terker AS | Nature communications | 38886379 | Nat Commun | 2024 Jun 17 |
| VU6036720: The First Potent and Selective In Vitro Inhibitor of Heteromeric Kir4.1/5.1 Inward Rectifier Potassium Channels. | McClenahan SJ, Kent CN, Kharade SV, Isaeva E, Williams JC, Han C, Terker A, Gresham R 3rd, Lazarenko RM, Days EL, Romaine IM, Bauer JA, Boutaud O, Sulikowski GA, Harris R, Weaver CD, Staruschenko A, Lindsley CW, Denton JS | Molecular pharmacology | 35246480 | Mol Pharmacol | 2022 May |
| Bicarbonate is the primary inducer of KCC3a expression in renal cortical B-type intercalated cells. | Ferdaus MZ, Terker AS, Koumangoye R, Wall SM, Delpire E | American journal of physiology. Cell physiology | 37036298 | Am J Physiol Cell Physiol | 2023 May 1 |
| Kidney collecting duct-derived vasopressin is not essential for appropriate concentration or dilution of urine. | Zuchowski Y, Carty JS, Trapani JB, Watts JA, Bock F, Zhang M, Terker AS, Zent R, Delpire E, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 38695074 | Am J Physiol Renal Physiol | 2024 Jun 1 |
| Rac1 promotes kidney collecting duct repair by mechanically coupling cell morphology to mitotic entry. | Bock F, Dong X, Li S, Viquez OM, Sha E, Tantengco M, Hennen EM, Plosa E, Ramezani A, Brown KL, Whang YM, Terker AS, Arroyo JP, Harrison DG, Fogo A, Brakebusch CH, Pozzi A, Zent R | Science advances | 38324689 | Sci Adv | 2024 Feb 9 |
| Disruption of mitochondrial electron transport impairs urinary concentration via AMPK-dependent suppression of aquaporin 2. | Carty JS, Bessho R, Zuchowski Y, Trapani JB, Davidoff O, Kobayashi H, Roland JT, Watts JA, Terker AS, Bock F, Arroyo JP, Haase VH | JCI insight | 39361429 | JCI Insight | 2024 Nov 22 |
| ESCRT recruitment to SARS-CoV-2 spike induces virus-like particles that improve mRNA vaccines. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, West AP Jr, Bjorkman PJ | Cell | 37146611 | Cell | 2023 May 25 |
| ESCRT recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like particles and enhanced antibody responses. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, Bjorkman PJ | bioRxiv : the preprint server for biology | 36597535 | bioRxiv | 2022 Dec 27 |
| N4BP1 coordinates ubiquitin-dependent crosstalk within the IκB kinase family to limit Toll-like receptor signaling and inflammation. | Gitlin AD, Maltzman A, Kanno Y, Heger K, Reja R, Schubert AF, Wierciszewski LJ, Pantua H, Kapadia SB, Harris SF, Webster JD, Newton K, Dixit VM | Immunity | 38697117 | Immunity | 2024 May 14 |
| Beyond the exome: what's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | ArXiv | 36713248 | ArXiv | 2023 Jan 18 |
| Panels, Exomes, Genomes, and More-Finding the Best Path Through the Diagnostic Odyssey. | Lenahan AL, Squire AE, Miller DE | Pediatric clinics of North America | 37704349 | Pediatr Clin North Am | 2023 Oct |
| A distant global control region is essential for normal expression of anterior HOXA genes during mouse and human craniofacial development. | Wilderman A, D'haene E, Baetens M, Yankee TN, Winchester EW, Glidden N, Roets E, Van Dorpe J, Janssens S, Miller DE, Galey M, Brown KM, Stottmann RW, Vergult S, Weaver KN, Brugmann SA, Cox TC, Cotney J | Nature communications | 38167838 | Nat Commun | 2024 Jan 2 |
| Long-Read DNA and RNA Sequencing to Streamline Clinical Genetic Testing and Reduce Barriers to Comprehensive Genetic Testing. | Damaraju N, Miller AL, Miller DE | The journal of applied laboratory medicine | 38167773 | J Appl Lab Med | 2024 Jan 3 |
| Beyond the exome: What's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | American journal of human genetics | 37541186 | Am J Hum Genet | 2023 Aug 3 |
| Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | G3 (Bethesda, Md.) | 37552705 | G3 (Bethesda) | 2023 Sep 30 |
| CFAP47 is a novel causative gene implicated in X-linked polycystic kidney disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MP, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | medRxiv : the preprint server for health sciences | 38633811 | medRxiv | 2024 Apr 5 |
| Applications of long-read sequencing to Mendelian genetics. | Mastrorosa FK, Miller DE, Eichler EE | Genome medicine | 37316925 | Genome Med | 2023 Jun 14 |
| Advances in the discovery and analyses of human tandem repeats. | Chaisson MJP, Sulovari A, Valdmanis PN, Miller DE, Eichler EE | Emerging topics in life sciences | 37905568 | Emerg Top Life Sci | 2023 Dec 14 |
| High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SHR, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | Genome research | 39358015 | Genome Res | 2024 Nov 20 |
| Clinical RNA sequencing clarifies variants of uncertain significance identified by prior testing. | Marquez J, Cech JN, Paschal CR, Dingmann B, Scott AI, Thies JM, Mills MR, Albert CM, Beck AE, Beckman E, Bonkowski ES, Earl DL, Lam CT, Mefford HC, Merritt JL 2nd, Nelson Z, Ohlsen TJ, Taylor MR, Perlman SJ, Rudzinski ER, Sikes MC, Waligorski N, Wenger TL, Adam MP, Mirzaa GM, Bennett JT, Glass IA, Sternen DL, Miller DE | Genetics in medicine open | 39484203 | Genet Med Open | 2024 |
| Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson Z, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | medRxiv : the preprint server for health sciences | 38496498 | medRxiv | 2024 Mar 7 |
| Combined approaches, including long-read sequencing, address the diagnostic challenge of HYDIN in primary ciliary dyskinesia. | Fleming A, Galey M, Briggs L, Edwards M, Hogg C, John S, Wilkinson S, Quinn E, Rai R, Burgoyne T, Rogers A, Patel MP, Griffin P, Muller S, Carr SB, Loebinger MR, Lucas JS, Shah A, Jose R, Mitchison HM, Shoemark A, Miller DE, Morris-Rosendahl DJ | European journal of human genetics : EJHG | 38605126 | Eur J Hum Genet | 2024 Sep |
| Diagnostic utility of DNA methylation analysis in genetically unsolved pediatric epilepsies and CHD2 episignature refinement. | LaFlamme CW, Rastin C, Sengupta S, Pennington HE, Russ-Hall SJ, Schneider AL, Bonkowski ES, Almanza Fuerte EP, Allan TJ, Zalusky MP, Goffena J, Gibson SB, Nyaga DM, Lieffering N, Hebbar M, Walker EV, Darnell D, Olsen SR, Kolekar P, Djekidel MN, Rosikiewicz W, McConkey H, Kerkhof J, Levy MA, Relator R, Lev D, Lerman-Sagie T, Park KL, Alders M, Cappuccio G, Chatron N, Demain L, Genevieve D, Lesca G, Roscioli T, Sanlaville D, Tedder ML, Gupta S, Jones EA, Weisz-Hubshman M, Ketkar S, Dai H, Worley KC, Rosenfeld JA, Chao HT, Undiagnosed Diseases Network, Neale G, Carvill GL, University of Washington Center for Rare Disease Research, Wang Z, Berkovic SF, Sadleir LG, Miller DE, Scheffer IE, Sadikovic B, Mefford HC | Nature communications | 39107278 | Nat Commun | 2024 Aug 6 |
| Long-Read Sequencing is Required for Precision Diagnosis of Incontinentia Pigmenti. | Wojcik MH, Clark RD, Elias AF, Genetti CA, Madden JA, Simpson D, Golkar L, Zalusky MP, Miller AL, Rodriguez A, Goffena J, Dash CA, Damaraju N, Gibson SB, Storz SH, Anderson Z, Gustafson JA, Thiffault I, Farrow EG, Pastinen T, Lin J, Huang J, Beggs AH, Agrawal PB, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Miller DT, Miller DE | Research square | 39975911 | Res Sq | 2025 Jan 30 |
| Concordance of Whole-Genome Long-Read Sequencing with Standard Clinical Testing for Prader-Willi and Angelman Syndromes. | Paschal CR, Zalusky MPG, Beck AE, Gillentine MA, Narayanan J, Damaraju N, Goffena J, Storz SHR, Miller DE | The Journal of molecular diagnostics : JMD | 39756651 | J Mol Diagn | 2025 Mar |
| Congenital pleuropulmonary blastoma in a newborn with a variant of uncertain significance in DICER1 evaluated by RNA-sequencing. | Lyle ANJ, Ohlsen TJD, Miller DE, Brown G, Waligorski N, Stark R, Taylor MR, Puia-Dumitrescu M | Maternal health, neonatology and perinatology | 36922881 | Matern Health Neonatol Perinatol | 2023 Mar 16 |
| Heterozygous inversion breakpoints suppress meiotic crossovers by altering recombination repair outcomes. | Li H, Berent E, Hadjipanteli S, Galey M, Muhammad-Lahbabi N, Miller DE, Crown KN | PLoS genetics | 37053290 | PLoS Genet | 2023 Apr |
| CFAP47 is Implicated in X-Linked Polycystic Kidney Disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MPG, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | Kidney international reports | 39698362 | Kidney Int Rep | 2024 Dec |
| Long-read sequencing of hundreds of diverse brains provides insight into the impact of structural variation on gene expression and DNA methylation. | Billingsley KJ, Meredith M, Daida K, Jerez PA, Negi S, Malik L, Genner RM, Moller A, Zheng X, Gibson SB, Mastoras M, Baker B, Kouam C, Paquette K, Jarreau P, Makarious MB, Moore A, Hong S, Vitale D, Shah S, Monlong J, Pantazis CB, Asri M, Shafin K, Carnevali P, Marenco S, Auluck P, Mandal A, Miga KH, Rhie A, Reed X, Ding J, Cookson MR, Nalls M, Singleton A, Miller DE, Chaisson M, Timp W, Gibbs JR, Phillippy AM, Kolmogorov M, Jain M, Sedlazeck FJ, Paten B, Blauwendraat C | bioRxiv : the preprint server for biology | 39764002 | bioRxiv | 2024 Dec 17 |
| GENOME REPORT: Chromosome-scale genome assembly of the African spiny mouse ( Acomys cahirinus ). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | bioRxiv : the preprint server for biology | 37066261 | bioRxiv | 2023 Apr 5 |
| Characteristics, Genetic Testing, and Diagnoses of Infants with Neonatal Encephalopathy Not Due to Hypoxic Ischemic Encephalopathy: A Cohort Study. | Lenahan A, Mietzsch U, Wood TR, Callahan KP, Weiss EM, Miller DE, German K, Natarajan N, Puia-Dumitrescu M, Esposito V, Kolnik S, Law JB | The Journal of pediatrics | 37269901 | J Pediatr | 2023 Sep |
| Subdural hemorrhage, macrocephaly, rash, and developmental delay in an infant: A pathogenic variant in NLRP3 causes CINCA/NOMID. | Koti AS, Lanis A, Finlayson S, Canny S, Feldman EA, Miller DE, Rosenwasser N, Scott AA, Wong SC, Feldman KW | American journal of medical genetics. Part A | 37548074 | Am J Med Genet A | 2023 Dec |
| 3-hour genome sequencing and targeted analysis to rapidly assess genetic risk. | Zalusky MP, Gustafson JA, Bohaczuk SC, Mallory B, Reed P, Wenger T, Beckman E, Chang IJ, Paschal CR, Buchan JG, Lockwood CM, Puia-Dumitrescu M, Garalde DR, Guillory J, Markham AJ, Bamshad MJ, Eichler EE, Stergachis AB, Miller DE | Genetics in medicine open | 39421454 | Genet Med Open | 2024 |
| Phenotypes and ontogeny of senescent hepatic stellate cells in metabolic dysfunction-associated steatohepatitis. | Yashaswini CN, Qin T, Bhattacharya D, Amor C, Lowe S, Lujambio A, Wang S, Friedman SL | Journal of hepatology | 38508241 | J Hepatol | 2024 Aug |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Nature aging | 38267706 | Nat Aging | 2024 Mar |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Research square | 37841853 | Res Sq | 2023 Sep 26 |
| Senolytic CAR T cells reverse aging-associated defects in intestinal regeneration and fitness. | Eskiocak O, Chowdhury S, Shah V, Nnuji-John E, Chung C, Boyer JA, Harris AS, Habel J, Sadelain M, Beyaz S, Amor C | bioRxiv : the preprint server for biology | 38529506 | bioRxiv | 2024 Mar 22 |
| Spatially clustered type I interferon responses at injury borderzones. | Ninh VK, Calcagno DM, Yu JD, Zhang B, Taghdiri N, Sehgal R, Mesfin JM, Chen CJ, Kalhor K, Toomu A, Duran JM, Adler E, Hu J, Zhang K, Christman KL, Fu Z, Bintu B, King KR | Nature | 39198639 | Nature | 2024 Sep |
| Prophylactic feeding tube placement for squamous cell carcinoma of the head and neck. | Kao DD, Ferrandino RM, Bauml JM, Marshall DC, Bakst R, Roof S, Park YA, Sigel KM | Oral oncology | 36326521 | Oral Oncol | 2022 Dec |
| Gender-Affirming Surgery and Cancer: Considerations for Radiation Oncologists for Pelvic Radiation in Transfeminine Patients. | Smart AC, Liu KX, Domogauer JD, Rodriguez-Russo C, Jones B, Dickstein DR, Mancias JD, Shiloh RY, Wintner A, Zietman AL, Marshall DC, Dyer MA, Russo AL | International journal of radiation oncology, biology, physics | 37230432 | Int J Radiat Oncol Biol Phys | 2023 Oct 1 |
| Pharmaceutical industry payments and prescriptions of direct acting antiviral drugs for hepatitis C virus infection. | Murayama A, Sigel KM, Tarras ES, Marshall DC | Liver international : official journal of the International Association for the Study of the Liver | 39310996 | Liver Int | 2024 Dec |
| Female erectile tissues and sexual dysfunction after pelvic radiotherapy: A scoping review. | Marshall DC, Tarras ES, Ali A, Bloom J, Torres MA, Kahn JM | CA: a cancer journal for clinicians | 35298025 | CA Cancer J Clin | 2022 Jul |
| Associations between pharmaceutical industry payments to physicians and prescription of PARP inhibitors in the United States. | Murayama A, Marshall DC | Gynecologic oncology | 38147713 | Gynecol Oncol | 2024 Feb |
| Sexual health and treatment-related sexual dysfunction in sexual and gender minorities with prostate cancer. | Dickstein DR, Edwards CR, Lehrer EJ, Tarras ES, Gallitto M, Sfakianos J, Galsky MD, Stock R, Safer JD, Rosser BRS, Marshall DC | Nature reviews. Urology | 37217695 | Nat Rev Urol | 2023 Jun |
| Neutrophil-to-lymphocyte ratio as a predictor of surgical outcomes in head and neck cancer. | Kao DD, Ferrandino RM, Roof SA, Marshall DC, Khan MN, Chai RL, Park YA, Sigel KM | Head & neck | 37204760 | Head Neck | 2023 Aug |
| Association between rheumatoid arthritis and risk of radiotherapy toxicity: a systematic review. | Liebenberg N, McWilliam A, Kerns SL, Marshall DC, West CM | BMJ oncology | 39524982 | BMJ Oncol | 2024 Jan |
| Effect of treatment interruptions on overall survival in patients with triple-negative breast cancer. | Chow R, Hasan S, Choi JI, Fox J, Chhabra AM, Marshall DC, Bakst RL, Simone CB 2nd | Journal of the National Cancer Institute | 37399094 | J Natl Cancer Inst | 2023 Sep 7 |
| Effects of trauma history on cancer-related screening, diagnosis, and treatment. | Marshall DC, Carney LM, Hsieh K, Dickstein DR, Downes M, Chaudhari A, McVorran S, Montgomery GH, Schnur JB | The Lancet. Oncology | 37922933 | Lancet Oncol | 2023 Nov |
| Systematic Review of Comparisons Between Plastic and Silicone Dilators: Revealing a Knowledge Gap. | Morgan O, Lopez MD, Martinez AJC, Marshall DC, Schnur JB | Sexual medicine reviews | 37051960 | Sex Med Rev | 2022 Oct 1 |
| Sex-Based Bias in Artificial Intelligence-Based Segmentation Models in Clinical Oncology. | Doo FX, Naranjo WG, Kapouranis T, Thor M, Chao M, Yang X, Marshall DC | Clinical oncology (Royal College of Radiologists (Great Britain)) | 39874747 | Clin Oncol (R Coll Radiol) | 2025 Mar |
| Systematic Review of Comparisons Between Plastic and Silicone Dilators: Revealing a Knowledge Gap. | Morgan O, Lopez MD, Martinez AJC, Marshall DC, Schnur JB | Sexual medicine reviews | 36030181 | Sex Med Rev | 2022 Oct |
| Trauma-Informed Radiation Therapy: Implementation and Evaluation of a Sensitive Practice Tool for Female Patients Undergoing Radiotherapy for Breast Cancer. | Marshall D, Green S, Jones BM, Starrs C, Montgomery GH, Minassian K, Wunder B, Force J, Schnur JB | Journal of the American College of Radiology : JACR | 36126825 | J Am Coll Radiol | 2022 Nov |
| Dose and fractionation regimen for brachytherapy boost in cervical cancer in the US. | Hsieh K, Bloom JR, Dickstein DR, Hsieh C, Marshall D, Ghiassi-Nejad Z, Raince J, Lymberis S, Chadha M, Gupta V | Gynecologic oncology | 38052109 | Gynecol Oncol | 2024 Jan |
| A qualitative analysis of female patient perspectives on physician communication regarding sexual dysfunction associated with pelvic radiotherapy. | Morgan O, Schnur J, Caban-Martinez AJ, Duenas-Lopez M, Huang M, Portelance L, Elkhadem A, Marshall DC | The journal of sexual medicine | 37037772 | J Sex Med | 2023 May 26 |
| Cuban American Perspectives on Sexual Dysfunction Following Pelvic Radiotherapy: A Qualitative Study. | Duenas-Lopez M, Morgan O, Marshall DC, Carney L, Caban-Martinez A, Huang M, Portelance L, Schnur J | Sexuality and disability | 38948491 | Sex Disabil | 2023 Dec |
| Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State. | Pitter KL, Grbovic-Huezo O, Joost S, Singhal A, Blum M, Wu K, Holm M, Ferrena A, Bhutkar A, Hudson A, Lecomte N, de Stanchina E, Chaligne R, Iacobuzio-Donahue CA, Pe'er D, Tammela T | Cancer research | 35952360 | Cancer Res | 2022 Oct 4 |
| Enhancer-activated RET confers protection against oxidative stress to KMT2A-rearranged acute myeloid leukemia. | Frett B, Stephens KE, Koss B, Melnyk S, Farrar J, Saha D, Roy Choudhury S | Cancer science | 38226414 | Cancer Sci | 2024 Mar |
| CAR-T Therapies in Solid Tumors: Opportunities and Challenges. | Guzman G, Reed MR, Bielamowicz K, Koss B, Rodriguez A | Current oncology reports | 36853475 | Curr Oncol Rep | 2023 May |
| Evolved histone tail regulates 53BP1 recruitment at damaged chromatin. | Kelliher JL, Folkerts ML, Shen KV, Song W, Tengler K, Stiefel CM, Lee SO, Dray E, Zhao W, Koss B, Pannunzio NR, Leung JW | Nature communications | 38821984 | Nat Commun | 2024 May 31 |
| CRISPR/dCas9-KRAB-Mediated Suppression of S100b Restores p53-Mediated Apoptosis in Melanoma Cells. | Roy Choudhury S, Heflin B, Taylor E, Koss B, Avaritt NL, Tackett AJ | Cells | 36899866 | Cells | 2023 Feb 24 |
| Resveratrol induces major histocompatibility complex class I antigen presentation in a STING-dependent and independent manner in melanoma. | Morehead LC, Koss B, Fil D, Heflin B, Garg S, Wallis KF, Tackett AJ, Miousse IR | Molecular immunology | 37837954 | Mol Immunol | 2023 Nov |
| Chemical inhibition of DNA-PKcs impairs the activation and cytotoxicity of CD4(+) helper and CD8(+) effector T cells. | Azevedo-Pouly AC, Appell LE, Burdine L, Rogers LJ, Morehead LC, Fil D, Barker M, Rainwater RR, Waldrip ZJ, Koss B, Burdine MS | Immunology and cell biology | 37149747 | Immunol Cell Biol | 2023 Aug |
| Synchrony and specificity in the maternal and the paternal brain: relations to oxytocin and vasopressin. | Atzil S, Hendler T, Zagoory-Sharon O, Winetraub Y, Feldman R | Journal of the American Academy of Child and Adolescent Psychiatry | 22840551 | J Am Acad Child Adolesc Psychiatry | 2012 Aug |
| Intravital 3D visualization and segmentation of murine neural networks at micron resolution. | Lautman Z, Winetraub Y, Blacher E, Yu C, Terem I, Chibukhchyan A, Marshel JH, de la Zerda A | Scientific reports | 35907928 | Sci Rep | 2022 Jul 30 |
| In Vivo Molecular Optical Coherence Tomography of Lymphatic Vessel Endothelial Hyaluronan Receptors. | Si P, Sen D, Dutta R, Yousefi S, Dalal R, Winetraub Y, Liba O, de la Zerda A | Scientific reports | 28439123 | Sci Rep | 2017 Apr 24 |
| Portraying emotions at their unfolding: a multilayered approach for probing dynamics of neural networks. | Raz G, Winetraub Y, Jacob Y, Kinreich S, Maron-Katz A, Shaham G, Podlipsky I, Gilam G, Soreq E, Hendler T | NeuroImage | 22285693 | Neuroimage | 2012 Apr 2 |
| Gold Nanoprisms as Optical Coherence Tomography Contrast Agents in the Second Near-Infrared Window for Enhanced Angiography in Live Animals. | Si P, Yuan E, Liba O, Winetraub Y, Yousefi S, SoRelle ED, Yecies DW, Dutta R, de la Zerda A | ACS nano | 30422624 | ACS Nano | 2018 Dec 26 |
| Noninvasive virtual biopsy using micro-registered optical coherence tomography (OCT) in human subjects. | Winetraub Y, Van Vleck A, Yuan E, Terem I, Zhao J, Yu C, Chan W, Do H, Shevidi S, Mao M, Yu J, Hong M, Blankenberg E, Rieger KE, Chu S, Aasi S, Sarin KY, de la Zerda A | Science advances | 38598626 | Sci Adv | 2024 Apr 12 |
| Real-Time Detection of Circulating Tumor Cells in Living Animals Using Functionalized Large Gold Nanorods. | Dutta R, Liba O, SoRelle ED, Winetraub Y, Ramani VC, Jeffrey SS, Sledge GW, de la Zerda A | Nano letters | 30895796 | Nano Lett | 2019 Apr 10 |
| The influence of axonal beading and undulation on axonal diameter mapping. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | bioRxiv : the preprint server for biology | 37131702 | bioRxiv | 2023 Apr 19 |
| Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. | Fan Q, Eichner C, Afzali M, Mueller L, Tax CMW, Davids M, Mahmutovic M, Keil B, Bilgic B, Setsompop K, Lee HH, Tian Q, Maffei C, Ramos-Llordén G, Nummenmaa A, Witzel T, Yendiki A, Song YQ, Huang CC, Lin CP, Weiskopf N, Anwander A, Jones DK, Rosen BR, Wald LL, Huang SY | NeuroImage | 35217204 | Neuroimage | 2022 Jul 1 |
| The effects of axonal beading and undulation on axonal diameter estimation from diffusion MRI: Insights from simulations in human axons segmented from three-dimensional electron microscopy. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | NMR in biomedicine | 38168082 | NMR Biomed | 2024 Apr |
| Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. | Huang SY, Witzel T, Keil B, Scholz A, Davids M, Dietz P, Rummert E, Ramb R, Kirsch JE, Yendiki A, Fan Q, Tian Q, Ramos-Llordén G, Lee HH, Nummenmaa A, Bilgic B, Setsompop K, Wang F, Avram AV, Komlosh M, Benjamini D, Magdoom KN, Pathak S, Schneider W, Novikov DS, Fieremans E, Tounekti S, Mekkaoui C, Augustinack J, Berger D, Shapson-Coe A, Lichtman J, Basser PJ, Wald LL, Rosen BR | NeuroImage | 34464739 | Neuroimage | 2021 Nov |
| Eddy current-induced artifact correction in high b-value ex vivo human brain diffusion MRI with dynamic field monitoring. | Ramos-Llordén G, Park DJ, Kirsch JE, Scholz A, Keil B, Maffei C, Lee HH, Bilgic B, Edlow BL, Mekkaoui C, Yendiki A, Witzel T, Huang SY | Magnetic resonance in medicine | 37753621 | Magn Reson Med | 2024 Feb |
| In vivo mapping of cellular resolution neuropathology in brain ischemia with diffusion MRI. | Wu D, Lee HH, Ba R, Turnbill V, Wang X, Luo Y, Walczak P, Fieremans E, Novikov DS, Martin LJ, Northington FJ, Zhang J | Science advances | 39018390 | Sci Adv | 2024 Jul 19 |
| Romer-EPTI: Rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale diffusion MRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | Magnetic resonance in medicine | 39552568 | Magn Reson Med | 2025 Apr |
| Scattering approach to diffusion quantifies axonal damage in brain injury. | Abdollahzadeh A, Coronado-Leija R, Lee HH, Sierra A, Fieremans E, Novikov DS | ArXiv | 39975429 | ArXiv | 2025 Jan 30 |
| Perivascular space diffusivity and brain microstructural measures are associated with circadian time and sleep quality. | Brendstrup-Brix K, Ulv Larsen SM, Lee HH, Knudsen GM | Journal of sleep research | 38676409 | J Sleep Res | 2024 Dec |
| In vivo human neurite exchange imaging (NEXI) at 500 mT/m diffusion gradients. | Chan KS, Ma Y, Lee H, Marques JP, Olesen J, Coelho S, Novikov DS, Jespersen S, Huang SY, Lee HH | bioRxiv : the preprint server for biology | 39763747 | bioRxiv | 2024 Dec 17 |
| High-fidelity, high-spatial-resolution diffusion magnetic resonance imaging of ex vivo whole human brain at ultra-high gradient strength with structured low-rank echo-planar imaging ghost correction. | Ramos-Llordén G, Lobos RA, Kim TH, Tian Q, Witzel T, Lee HH, Scholz A, Keil B, Yendiki A, Bilgiç B, Haldar JP, Huang SY | NMR in biomedicine | 36106429 | NMR Biomed | 2023 Feb |
| DIMOND: DIffusion Model OptimizatioN with Deep Learning. | Li Z, Li Z, Bilgic B, Lee HH, Ying K, Huang SY, Liao H, Tian Q | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 38634608 | Adv Sci (Weinh) | 2024 Jun |
| Romer-EPTI: rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale dMRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | bioRxiv : the preprint server for biology | 38352481 | bioRxiv | 2024 Apr 1 |
| Age-related alterations in human cortical microstructure across the lifespan: Insights from high-gradient diffusion MRI. | Lee H, Lee HH, Ma Y, Eskandarian L, Gaudet K, Tian Q, Krijnen EA, Russo AW, Salat DH, Klawiter EC, Huang SY | Aging cell | 39118344 | Aging Cell | 2024 Nov |
| Revealing membrane integrity and cell size from diffusion kurtosis time dependence. | Lee HH, Novikov DS, Fieremans E, Huang SY | Magnetic resonance in medicine | 39473219 | Magn Reson Med | 2025 Mar |
| Sociodemographic inequalities in uranium and other metals in community water systems across the USA, 2006-11: a cross-sectional study. | Ravalli F, Yu Y, Bostick BC, Chillrud SN, Schilling K, Basu A, Navas-Acien A, Nigra AE | The Lancet. Planetary health | 35397220 | Lancet Planet Health | 2022 Apr |
| Public drinking water contaminant estimates for birth cohorts in the Environmental Influences on Child Health Outcomes (ECHO) Cohort. | Bloomquist TR, Spaur M, Cerna-Turoff I, Kress AM, Burjak M, Kupsco A, Casey JA, Herbstman JB, Nigra AE | Journal of exposure science & environmental epidemiology | 39098852 | J Expo Sci Environ Epidemiol | 2024 Aug 4 |
| Association of Water Arsenic With Incident Diabetes in U.S. Adults: The Multi-Ethnic Study of Atherosclerosis and the Strong Heart Study. | Spaur M, Galvez-Fernandez M, Chen Q, Lombard MA, Bostick BC, Factor-Litvak P, Fretts AM, Shea SJ, Navas-Acien A, Nigra AE | Diabetes care | 38656975 | Diabetes Care | 2024 Jul 1 |
| Impact of lowering the US maximum contaminant level on arsenic exposure: Differences by race, region, and water arsenic in NHANES 2003-2014. | Spaur M, Bostick BC, Chillrud SN, Factor-Litvak P, Navas-Acien A, Nigra AE | Environmental pollution (Barking, Essex : 1987) | 37331581 | Environ Pollut | 2023 Sep 15 |
| Contribution of arsenic and uranium in private wells and community water systems to urinary biomarkers in US adults: The Strong Heart Study and the Multi-Ethnic Study of Atherosclerosis. | Spaur M, Glabonjat RA, Schilling K, Lombard MA, Galvez-Fernandez M, Lieberman-Cribbin W, Hayek C, Ilievski V, Balac O, Izuchukwu C, Patterson K, Basu A, Bostick BC, Chen Q, Sanchez T, Navas-Acien A, Nigra AE | Journal of exposure science & environmental epidemiology | 37558699 | J Expo Sci Environ Epidemiol | 2024 Jan |
| US drinking water quality: exposure risk profiles for seven legacy and emerging contaminants. | Levin R, Villanueva CM, Beene D, Cradock AL, Donat-Vargas C, Lewis J, Martinez-Morata I, Minovi D, Nigra AE, Olson ED, Schaider LA, Ward MH, Deziel NC | Journal of exposure science & environmental epidemiology | 37739995 | J Expo Sci Environ Epidemiol | 2024 Jan |
| Geospatial Assessment of Racial/Ethnic Composition, Social Vulnerability, and Lead Water Service Lines in New York City. | Nigra AE, Lieberman-Cribbin W, Bostick BC, Chillrud SN, Carrión D | Environmental health perspectives | 37646509 | Environ Health Perspect | 2023 Aug |
| Cross-sectional associations between drinking water arsenic and urinary inorganic arsenic in the United States: NHANES 2003-2014. | Spaur M, Lombard MA, Ayotte JD, Bostick BC, Chillrud SN, Navas-Acien A, Nigra AE | Environmental research | 36963713 | Environ Res | 2023 Jun 15 |
| Nationwide geospatial analysis of county racial and ethnic composition and public drinking water arsenic and uranium. | Martinez-Morata I, Bostick BC, Conroy-Ben O, Duncan DT, Jones MR, Spaur M, Patterson KP, Prins SJ, Navas-Acien A, Nigra AE | Nature communications | 36460659 | Nat Commun | 2022 Dec 3 |
| Regional and racial/ethnic inequalities in public drinking water fluoride concentrations across the US. | Hefferon R, Goin DE, Sarnat JA, Nigra AE | Journal of exposure science & environmental epidemiology | 37391608 | J Expo Sci Environ Epidemiol | 2024 Jan |
| Socioeconomic vulnerability and public water arsenic concentrations across the US. | Nigra AE, Cazacu-De Luca A, Navas-Acien A | Environmental pollution (Barking, Essex : 1987) | 36084737 | Environ Pollut | 2022 Nov 15 |
| Profiling of the immune landscape in murine glioblastoma following blood brain/tumor barrier disruption with MR image-guided focused ultrasound. | Sheybani ND, Witter AR, Garrison WJ, Miller GW, Price RJ, Bullock TNJ | Journal of neuro-oncology | 34734364 | J Neurooncol | 2022 Jan |
| Focused ultrasound for the treatment of glioblastoma. | Roberts JW, Powlovich L, Sheybani N, LeBlang S | Journal of neuro-oncology | 35267132 | J Neurooncol | 2022 Apr |
| Letter to the editor regarding "Translation of focused ultrasound for blood-brain barrier opening in glioma". | Price RJ, Bullock TNJ, Sheybani ND | Journal of controlled release : official journal of the Controlled Release Society | 35780955 | J Control Release | 2022 Sep |
| Applications of focused ultrasound-mediated blood-brain barrier opening. | Gorick CM, Breza VR, Nowak KM, Cheng VWT, Fisher DG, Debski AC, Hoch MR, Demir ZEF, Tran NM, Schwartz MR, Sheybani ND, Price RJ | Advanced drug delivery reviews | 36272635 | Adv Drug Deliv Rev | 2022 Dec |
| Solid Tumor Treatment via Augmentation of Bioactive C6 Ceramide Levels with Thermally Ablative Focused Ultrasound. | Thim EA, Fox T, Deering T, Vass LR, Sheybani ND, Kester M, Price RJ | bioRxiv : the preprint server for biology | 36993445 | bioRxiv | 2023 Mar 23 |
| Barriers to immune cell infiltration in tumors. | Melssen MM, Sheybani ND, Leick KM, Slingluff CL Jr | Journal for immunotherapy of cancer | 37072352 | J Immunother Cancer | 2023 Apr |
| Rapid Interactions of Widespread Brain Networks Characterize Semantic Cognition. | Aboud KS, Nguyen TQ, Del Tufo SN, Chang C, Zald DH, Key AP, Price GR, Landman BA, Cutting LE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 36384679 | J Neurosci | 2023 Jan 4 |
| Regenerative Potential of Mandibular Condyle Cartilage and Bone Cells Compared to Costal Cartilage Cells When Seeded in Novel Gelatin Based Hydrogels. | Chin AR, Taboas JM, Almarza AJ | Annals of biomedical engineering | 33155145 | Ann Biomed Eng | 2021 May |
| Learning from Persistent Viremia: Mechanisms and Implications for Clinical Care and HIV-1 Cure. | Wu F, Simonetti FR | Current HIV/AIDS reports | 37955826 | Curr HIV/AIDS Rep | 2023 Dec |
| The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy. | McMyn NF, Varriale J, Fray EJ, Zitzmann C, MacLeod H, Lai J, Singhal A, Moskovljevic M, Garcia MA, Lopez BM, Hariharan V, Rhodehouse K, Lynn K, Tebas P, Mounzer K, Montaner LJ, Benko E, Kovacs C, Hoh R, Simonetti FR, Laird GM, Deeks SG, Ribeiro RM, Perelson AS, Siliciano RF, Siliciano JM | The Journal of clinical investigation | 37463049 | J Clin Invest | 2023 Sep 1 |
| Cognate antigen engagement induces HIV-1 expression in latently infected CD4(+) T cells from people on long-term antiretroviral therapy. | Moskovljevic M, Dragoni F, Board NL, Wu F, Lai J, Zhang H, White JR, Hoh R, Lynn K, Tebas P, Mounzer K, Deeks SG, Montaner LJ, Siliciano JD, Siliciano RF, Simonetti FR | Immunity | 39612916 | Immunity | 2024 Dec 10 |
| Bispecific antibodies promote natural killer cell-mediated elimination of HIV-1 reservoir cells. | Board NL, Yuan Z, Wu F, Moskovljevic M, Ravi M, Sengupta S, Mun SS, Simonetti FR, Lai J, Tebas P, Lynn K, Hoh R, Deeks SG, Siliciano JD, Montaner LJ, Siliciano RF | Nature immunology | 38278966 | Nat Immunol | 2024 Mar |
| Last in first out: SIV proviruses seeded later in infection are harbored in short-lived CD4(+) T cells. | Sambaturu N, Fray EJ, Wu F, Zitzmann C, Simonetti FR, Barouch DH, Siliciano JD, Siliciano RF, Ribeiro RM, Perelson AS, Molina-París C, Leitner T | bioRxiv : the preprint server for biology | 37961482 | bioRxiv | 2023 Nov 3 |
| Proviral location affects cognate peptide-induced virus production and immune recognition of HIV-1-infected T cell clones. | Dragoni F, Kwaa AK, Traut CC, Veenhuis RT, Woldemeskel BA, Camilo-Contreras A, Raymond HE, Dykema AG, Scully EP, Rosecrans AM, Smith KN, Bushman FD, Simonetti FR, Blankson JN | The Journal of clinical investigation | 37698927 | J Clin Invest | 2023 Nov 1 |
| Clonally expanded HIV-1 proviruses with 5'-leader defects can give rise to nonsuppressible residual viremia. | White JA, Wu F, Yasin S, Moskovljevic M, Varriale J, Dragoni F, Camilo-Contreras A, Duan J, Zheng MY, Tadzong NF, Patel HB, Quiambao JMC, Rhodehouse K, Zhang H, Lai J, Beg SA, Delannoy M, Kilcrease C, Hoffmann CJ, Poulin S, Chano F, Tremblay C, Cherian J, Barditch-Crovo P, Chida N, Moore RD, Summers MF, Siliciano RF, Siliciano JD, Simonetti FR | The Journal of clinical investigation | 36602866 | J Clin Invest | 2023 Mar 15 |
| Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants. | Fray EJ, Wu F, Simonetti FR, Zitzmann C, Sambaturu N, Molina-Paris C, Bender AM, Liu PT, Ventura JD, Wiseman RW, O'Connor DH, Geleziunas R, Leitner T, Ribeiro RM, Perelson AS, Barouch DH, Siliciano JD, Siliciano RF | Cell host & microbe | 36809762 | Cell Host Microbe | 2023 Mar 8 |
| Activity levels across the intensity spectrum in athletes: a systematic review protocol. | Capin JJ, Ridgers ND, Street JH, Fial A, Tomkinson GR | BMJ open sport & exercise medicine | 39161555 | BMJ Open Sport Exerc Med | 2024 |
| Midlife health crisis of former competitive athletes: dissecting their experiences via qualitative study. | Capin JJ, Wolf TL, Street JH, Smith CS, Lennon SL, Farquhar WB, Hunter SK, Piacentine LB | BMJ open sport & exercise medicine | 38736641 | BMJ Open Sport Exerc Med | 2024 |
| Long-term function, body composition and cardiometabolic health in midlife former athletes: a scoping review. | Street JH, Boos ZP, Fial A, Lennon SL, Smith CS, Creasy SA, Hunter SK, Farquhar WB, Capin JJ | BMJ open sport & exercise medicine | 37920279 | BMJ Open Sport Exerc Med | 2023 |
| Prolonged quadriceps latency during gait early after anterior cruciate ligament injury predicts radiographic knee osteoarthritis 6-years after anterior cruciate ligament reconstruction. | Ito N, Capin JJ, Arhos EK, Wellsandt E, Pohlig RT, Buchanan TS, Snyder-Mackler L | Clinical biomechanics (Bristol, Avon) | 38945068 | Clin Biomech (Bristol) | 2024 Jul |
| A caste differentiation mutant elucidates the evolution of socially parasitic ants. | Trible W, Chandra V, Lacy KD, Limón G, McKenzie SK, Olivos-Cisneros L, Arsenault SV, Kronauer DJC | Current biology : CB | 36858043 | Curr Biol | 2023 Mar 27 |
| The ORFIUS complex regulates ORC2 localization at replication origins. | Yang Z, Mogre S, He R, Berdan EL, Ho Sui SJ, Hill SJ | NAR cancer | 38288445 | NAR Cancer | 2024 Mar |
| Germline and Somatic Fumarate Hydratase Testing in Atypical Uterine Leiomyomata. | Kipnis LM, Breen KM, Koeller DR, Levine AS, Yang Z, Jun H, Tayob N, Stokes SM, Hayes CP, Ghazani AA, Hill SJ, Rana HQ | Cancer prevention research (Philadelphia, Pa.) | 38638033 | Cancer Prev Res (Phila) | 2024 May 2 |
| Enhanced Efficacy of Simultaneous PD-1 and PD-L1 Immune Checkpoint Blockade in High-Grade Serous Ovarian Cancer. | Wan C, Keany MP, Dong H, Al-Alem LF, Pandya UM, Lazo S, Boehnke K, Lynch KN, Xu R, Zarrella DT, Gu S, Cejas P, Lim K, Long HW, Elias KM, Horowitz NS, Feltmate CM, Muto MG, Worley MJ Jr, Berkowitz RS, Matulonis UA, Nucci MR, Crum CP, Rueda BR, Brown M, Liu XS, Hill SJ | Cancer research | 33158814 | Cancer Res | 2021 Jan 1 |
| Functional profiling of p53 and RB cell cycle regulatory proficiency suggests mechanism-driven molecular stratification in endometrial carcinoma. | Yang Z, Mogre S, Jun H, He R, Ghosh Chaudhary S, Bhattarai UR, Ho Sui SJ, Matulonis UA, Lazo S, Shetty A, Cameron A, Nguyen QD, Hill SJ | Cancer research communications | 39932274 | Cancer Res Commun | 2025 Feb 11 |
| Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1-AKT-p53 Interactions. | Lynch KN, Liu JF, Kesten N, Chow KH, Shetty A, He R, Afreen MF, Yuan L, Matulonis UA, Growdon WB, Muto MG, Horowitz NS, Feltmate CM, Worley MJ Jr, Berkowitz RS, Crum CP, Rueda BR, Hill SJ | Cancers | 34063609 | Cancers (Basel) | 2021 May 3 |
| Sialyl-Tn serves as a potential therapeutic target for ovarian cancer. | Al-Alem L, Prendergast JM, Clark J, Zarrella B, Zarrella DT, Hill SJ, Growdon WB, Pooladanda V, Spriggs DR, Cramer D, Elias KM, Nazer RI, Skates SJ, Behrens J, Dransfield DT, Rueda BR | Journal of ovarian research | 38566237 | J Ovarian Res | 2024 Apr 2 |
| Targeting Galectin 3 illuminates its contributions to the pathology of uterine serous carcinoma. | Matoba Y, Zarrella DT, Pooladanda V, Azimi Mohammadabadi M, Kim E, Kumar S, Xu M, Qin X, Ray LJ, Devins KM, Kumar R, Kononenko A, Eisenhauer E, Veillard IE, Yamagami W, Hill SJ, Sarosiek KA, Yeku OO, Spriggs DR, Rueda BR | British journal of cancer | 38438589 | Br J Cancer | 2024 May |
| The brief sense of community scale: Testing dimensionality and measurement invariance by gender among Hispanic/Latinx youth. | Lardier DT Jr, Opara I, Cantu I, Garcia-Reid P, Reid RJ | Journal of community psychology | 33938003 | J Community Psychol | 2022 Jan |
| Symptoms of distress during the COVID-19 pandemic in the United States. | Okafor CN, Asare M, Bautista KJ, Opara I | American journal of health studies | 34335012 | Am J Health Stud | 2021 |
| Testing the Factor Structure of the Brief Sense of Community Scale among Black Girls and the Relationship with Ethnic Identity, Empowerment and Social Support. | Opara I, Lardier DT, Garcia-Reid P, Reid RJ | Children and youth services review | 34305217 | Child Youth Serv Rev | 2021 Aug |
| Associations between Parent-Child Communication on Sexual Health and Drug Use and Use of Drugs during Sex among Urban Black Youth. | Boyd DT, Opara I, Quinn CR, Waller B, Ramos SR, Duncan DT | International journal of environmental research and public health | 34068128 | Int J Environ Res Public Health | 2021 May 13 |
| Utilizing Community-Centered Approaches to Address Black Maternal Mortality. | Falako S, Okoli N, Boateng MO, Sandoval J, Gumudavelly D, Larsuel S, Opara I | Health education & behavior : the official publication of the Society for Public Health Education | 37525982 | Health Educ Behav | 2023 Aug |
| A Spatial Analysis of Alcohol Outlet Density Type, Abandoned Properties, and Police Calls on Aggravated Assault Rates in a Northeastern U.S. City. | Lardier DT, Opara I, Lin Y, Roach E, Herrera A, Garcia-Reid P, Reid RJ | Substance use & misuse | 34210249 | Subst Use Misuse | 2021 |
| Racial/ethnic disparities in PM(2.5)-attributable cardiovascular mortality burden in the United States. | Ma Y, Zang E, Opara I, Lu Y, Krumholz HM, Chen K | Nature human behaviour | 37653149 | Nat Hum Behav | 2023 Dec |
| Sociopolitical control as a mediator between ethnic identity and social support on 30-day drug use among black girls. | Opara I, Hill AV, Calhoun A, Francois M, Alves C, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 34533434 | J Ethn Subst Abuse | 2023 Jul-Sep |
| Parenting profiles of academic and racial socialization: Associations with academic engagement and academic self-beliefs of African American adolescents. | Metzger IW, Cooper SM, Griffin CB, Golden AR, Opara I, Ritchwood TD | Journal of school psychology | 32988462 | J Sch Psychol | 2020 Oct |
| Correction: Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 39474034 | Urban Rev | 2023 Sep |
| Mental Health Burden among Black Adolescents: The Need for Better Assessment, Diagnosis and Treatment Engagement. | Opara I, Weissinger GM, Lardier DT Jr, Lanier Y, Carter S, Brawner BM | Social work in mental health | 34248423 | Soc Work Ment Health | 2021 |
| What happens when we ask? A phenomenological focus group on HIV prevention and sexual health education among emancipated foster care youth. | Opara I, Lizarraga A, Lardier DT, Herrera A, Garcia-Reid P, Reid RJ | Children and youth services review | 35910532 | Child Youth Serv Rev | 2022 Sep |
| The Association Between Racial Attitudes, Alcohol Use and Mood Disorders Among Black Adolescents. | Opara I, Lardier DT, Boyd D, Boateng ACO, Brawner BM | Journal of prevention (2022) | 36156761 | J Prev (2022) | 2023 Feb |
| Feeling Invisible and Unheard: A Qualitative Exploration of Gendered-Racist Stereotypes Influence on Sexual Decision Making and Mistreatment of Black Teen Girls. | Opara I, Weser V, Sands B, Fernandes CF, Hussett-Richardson S, Hieftje K | Youth & society | 35812173 | Youth Soc | 2022 May |
| Adolescent Polysubstance Use and Co-Occurring Weapon Carrying, Bullying Victimization, and Depressive Symptomology: Patterns and Differences in the United States. | Weerakoon SM, Henson-Garcia M, Abraham A, Vidot DC, Messiah SE, Opara I | Child psychiatry and human development | 37477824 | Child Psychiatry Hum Dev | 2025 Apr |
| A mixed-methods assessment of off-duty police shootings in a media-curated database. | Asabor EN, Lett E, Mosely B, Boone CA, Sundaresan S, Wong TA, Majumder MS | Health services research | 37276031 | Health Serv Res | 2023 Aug |
| Sexual Health and Drug Use Prevention for Black Girls (The Dreamer Girls Project): Protocol for an Intervention Development. | Opara I, Gabriel C, Duran-Becerra B, Bond K, Hill AV, Hussett-Richardson S, Alves C, Kershaw T | JMIR research protocols | 37556188 | JMIR Res Protoc | 2023 Aug 9 |
| Learning from community-based HIV prevention to inform control and mitigation of the COVID-19 pandemic. | Abrams JA, Rutledge J, Opara I | Preventive medicine | 36750159 | Prev Med | 2023 Apr |
| Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 38463537 | Urban Rev | 2023 Sep |
| School Absenteeism and Neighborhood Deprivation and Threat: Utilizing the Child Opportunity Index to Assess for Neighborhood-Level Disparities in Passaic County, NJ. | Opara I, Thorpe D, Lardier DT Jr | Urban education | 39669403 | Urban Educ (Beverly Hills Calif) | 2024 Nov |
| "It Makes Me Feel like I Can Make a Difference": A Qualitative Exploration of Peer Mentoring with Black and Hispanic High School Students. | Opara I, Metzger IW, Dawoud S, Pierre K, Assan MA, Garcia-Reid P, Reid RJ | Youth (Basel, Switzerland) | 39555142 | Youth (Basel) | 2023 Jun |
| Ethnic Identity as a Moderator Between HIV Knowledge, Viral Hepatitis Knowledge, and Psychological Antecedents Among Racial-Ethnic Minority Youth Living in an Urban Community. | Opara I, Lardier DT Jr, Durkee MI, Garcia-Reid P, Reid RJ | Journal of racial and ethnic health disparities | 34041704 | J Racial Ethn Health Disparities | 2022 Aug |
| Teaching Note-#BlackGirlsMatter and the Social Work Curriculum: Integrating Intersectionality Within Social Work Education. | Opara I, Brown TL | Journal of social work education | 36874948 | J Soc Work Educ | 2023 |
| Relationship between suicide ideation and attempts, bully victimization, dating violence, and depressive symptoms among Black and Hispanic youth. | Opara I, Weerakoon SM, Brooks Stephens JR, Choe T, Gunn JF 3rd, Thrasher SS | Suicide & life-threatening behavior | 37933468 | Suicide Life Threat Behav | 2025 Feb |
| Intersectional Effects of Sexual Orientation Concealment, Internalized Homophobia, and Gender Expression on Sexual Identity and HIV Risk Among Sexual Minority Men of Color: A Path Analysis. | Ramos SR, Lardier DT Jr, Opara I, Turpin RE, Boyd DT, Gutierrez JI Jr, Williams CN, Nelson LE, Kershaw T | The Journal of the Association of Nurses in AIDS Care : JANAC | 34101701 | J Assoc Nurses AIDS Care | 2021 Jul-Aug 01 |
| A Systematic Review on Sexual Health and Drug Use Prevention Interventions for Black Girls. | Opara I, Pierre K, Assan MA, Scheinfeld L, Alves C, Cross K, Lizarraga A, Brawner B | International journal of environmental research and public health | 35328864 | Int J Environ Res Public Health | 2022 Mar 8 |
| Ethnic Identity, Empowerment, Social Support and Sexual Risk Behaviors Among Black Adolescent Girls: Examining Drug Use as a Mediator. | Opara I, Rivera Rodas EI, Garcia-Reid P, Reid RJ | Child & adolescent social work journal : C & A | 35462639 | Child Adolesc Social Work J | 2022 Feb |
| Role of the Intersections of Gender, Race and Sexual Orientation in the Association between Substance Use Behaviors and Sexually Transmitted Infections in a National Sample of Adults with Recent Criminal Legal Involvement. | Harvey TD, Opara I, Wang EA | International journal of environmental research and public health | 35409785 | Int J Environ Res Public Health | 2022 Mar 30 |
| Structural indicators of suicide: an exploration of state-level risk factors among Black and White people in the United States, 2015-2019. | Robertson RA, Standley CJ, Gunn JF 3rd, Opara I | Journal of public mental health | 36185543 | J Public Ment Health | 2022 Feb 10 |
| Reframing Sexual Health for Black Girls and Women in HIV/STI Prevention Work: Highlighting the Role of Identity and Interpersonal Relationships. | Opara I, Abrams JA, Cross K, Amutah-Onukagha N | International journal of environmental research and public health | 34831855 | Int J Environ Res Public Health | 2021 Nov 18 |
| Alcohol Use Cravings as a Mediator Between Associated Risk Factors on Increased Alcohol Use among Youth Adults in New York During the COVID-19 Pandemic. | Opara I, Malik S, Lardier DT Jr, Gamble-George J, Kelly RJ, Okafor CN, Greene RN, Parisi D | Alcoholism treatment quarterly | 34898835 | Alcohol Treat Q | 2021 |
| Coping in the Time of COVID-19: Buffering Stressors With Coping Strategies. | Okafor CN, Bautista KJ, Asare M, Opara I | Journal of loss & trauma | 35173557 | J Loss Trauma | 2022 |
| Young Adults at the National Epicenter of the COVID-19 Outbreak: Understanding the Impact and Future Challenges of Social Distancing on Mental Health Outcomes. | Malik S, Opara I, Lardier DT Jr, Younger J, Greene RN | International journal of environmental research and public health | 38248498 | Int J Environ Res Public Health | 2023 Dec 26 |
| Empowerment in prevention: a qualitative inquiry into Black girl-centred strategies for reducing HIV/STI and drug misuse risk. | Opara I, Asabor E, Rutledge J, Brooks Stephens JR, Cayo S, Duran-Becerra B, Abrams J | Sexual and reproductive health matters | 39876818 | Sex Reprod Health Matters | 2024 Dec |
| Measuring Intrapersonal Psychological Empowerment and Ethnic Identity: Highlighting Strengths of Urban Black Girls. | Opara I, Lardier DT Jr, Garcia-Reid P, Reid RJ | Youth & society | 35813075 | Youth Soc | 2022 May |
| Strong Black Women: Linking Stereotypes, Stress, and Overeating Among a Sample of Black Female College Students. | Godbolt D, Opara I, Amutah-Onukagha N | Journal of black studies | 36710718 | J Black Stud | 2022 Sep |
| A latent profile analysis of psychological sense of community and ethnic identity among racial-ethnic minority young adults from the southwestern United States. | Lardier DT Jr, Opara I, Roach E | Journal of community psychology | 34402065 | J Community Psychol | 2022 Mar |
| Increasing HIV/AIDS knowledge among urban ethnic minority youth: Findings from a community-based prevention intervention program. | Lardier DT Jr, Opara I, Reid RJ, Garcia-Reid P, Herrera A, Cantu I | Journal of HIV/AIDS & social services | 34177389 | J HIV AIDS Soc Serv | 2021 |
| Effects of Brief Interventions on Internalizing Symptoms and Substance Use in Youth: A Systematic Review. | McDanal R, Parisi D, Opara I, Schleider JL | Clinical child and family psychology review | 34731373 | Clin Child Fam Psychol Rev | 2022 Jun |
| Understanding Neighborhoods' Impact on Youth Substance Use and Mental Health Outcomes in Paterson, New Jersey: Protocol for a Community-Based Participatory Research Study. | Opara I, R Leonard N, Thorpe D, Kershaw T | JMIR research protocols | 34047712 | JMIR Res Protoc | 2021 May 28 |
| Intrapersonal psychological empowerment profiles on ethnic identity, social support, and lifetime drug use among Hispanic adolescent girls. | Opara I, Lardier DT Jr, Fernandez Y, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 32787746 | J Ethn Subst Abuse | 2022 Jul-Sep |
| How Black Teen Girls Navigate Social Media to Form Romantic Relationships. | Weser VU, Opara I, Sands BE, Fernandes CF, Hieftje KD | Social media + society | 34858631 | Soc Media Soc | 2021 Jul 1 |
| Psychological sense of community, community civic participation, and ethnic identity on social justice orientation and psychological empowerment between LGBQ and Non-LGBQ youth of color. | Lardier DT, Opara I, Brammer MK, Pinto SA, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 36855462 | J LGBT Youth | 2023 |
| Assessing the Prevalence Rates of Internalizing Symptomatology Among Multiracial Adolescents in the United States: A Systematic Review. | Henson-García M, Weerakoon SM, Duncan C, Choe T, Opara I, A Baker K, L Sterling K, Messiah SE | Child psychiatry and human development | 38042957 | Child Psychiatry Hum Dev | 2023 Dec 2 |
| Addressing Gendered Racism Against Black Girls Using a Strengths-Based Empowerment-Intersectional Framework for Sexual Health and Substance Use Prevention Programming. | Opara I, Martin R, Hill AV, Calhoun A | Health promotion practice | 37166152 | Health Promot Pract | 2023 Jul |
| Black Adolescent Females' Perceptions of PrEP for HIV Risk Reduction. | Budge M, Opara I, Weser VU, Sands BE, Hieftje KD | Journal of the International Association of Providers of AIDS Care | 37853731 | J Int Assoc Provid AIDS Care | 2023 Jan-Dec |
| Examining the integrated model of the interpersonal-psychological theory of suicide and intersectionality theory among Black male adolescents. | Douglas RD, Alli JO, Gaylord-Harden N, Opara I, Gilreath T | Suicide & life-threatening behavior | 38411036 | Suicide Life Threat Behav | 2025 Feb |
| Brief Parent-Child Substance Use Education Intervention for Black Families in Urban Cities in New Jersey: Protocol for a Formative Study Design. | Opara I, Pierre K, Cayo S, Aneni K, Mwai C, Hogue A, Becker S | JMIR research protocols | 38722676 | JMIR Res Protoc | 2024 May 9 |
| HIV knowledge and protective factors among racial-ethnic minority youth: Moderation by Ethnic identity and LGBQ+ identity. | Lardier DT Jr, Opara I, Asabor EN, Bell F, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 39131490 | J LGBT Youth | 2024 |
| Racial Differences in 1-Year Mortality after Hospitalization for Chronic Obstructive Pulmonary Disease in the United States. | Jain S, Priya A, Pekow P, Spitzer K, Walkey AJ, Opara I, Krumholz HM, Lindenauer PK | Annals of the American Thoracic Society | 37943953 | Ann Am Thorac Soc | 2024 Apr |
| Full-length isoform sequencing for resolving the molecular basis of Charcot-Marie-Tooth 2A. | Stergachis AB, Blue EE, Gillentine MA, Wang LK, Schwarze U, Cortés AS, Ranchalis J, Allworth A, Bland AE, Chanprasert S, Chen J, Doherty D, Folta AB, Glass I, Horike-Pyne M, Huang AY, Khan AT, Leppig KA, Miller DE, Mirzaa G, Parhin A, Raskind W, Rosenthal EA, Sheppeard S, Strohbehn S, Sybert VP, Tran TT, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Byers PH, Nelson SF, Bamshad MJ, Dipple KM, Jarvik GP, Hoppins S, Hisama FM | bioRxiv : the preprint server for biology | 36798371 | bioRxiv | 2023 Feb 7 |
| Dominant-negative variant in SLC1A4 causes an autosomal dominant epilepsy syndrome. | Pujol-Giménez J, Mirzaa G, Blue EE, Albano G, Miller DE, Allworth A, Bennett JT, Byers PH, Chanprasert S, Chen J, Doherty D, Folta AB, Gillentine MA, Glass I, Hing A, Horike-Pyne M, Leppig KA, Parhin A, Ranchalis J, Raskind WH, Rosenthal EA, Schwarze U, Sheppeard S, Strohbehn S, Sybert VP, Timms A, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG)a, Undiagnosed Diseases Network (UDN), Bamshad MJ, Hisama FM, Jarvik GP, Dipple KM, Hediger MA, Stergachis AB | Annals of clinical and translational neurology | 37194416 | Ann Clin Transl Neurol | 2023 Jun |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | bioRxiv : the preprint server for biology | 37131601 | bioRxiv | 2023 Dec 11 |
| Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions. | Girskis KM, Stergachis AB, DeGennaro EM, Doan RN, Qian X, Johnson MB, Wang PP, Sejourne GM, Nagy MA, Pollina EA, Sousa AMM, Shin T, Kenny CJ, Scotellaro JL, Debo BM, Gonzalez DM, Rento LM, Yeh RC, Song JHT, Beaudin M, Fan J, Kharchenko PV, Sestan N, Greenberg ME, Walsh CA | Neuron | 34478631 | Neuron | 2021 Oct 20 |
| The regulatory potential of transposable elements in maize. | Bubb KL, Hamm MO, Tullius TW, Min JK, Ramirez-Corona B, Mueth NA, Ranchalis J, Mao Y, Bergstrom EJ, Vollger MR, Trapnell C, Cuperus JT, Stergachis AB, Queitsch C | bioRxiv : the preprint server for biology | 39026747 | bioRxiv | 2025 Jan 31 |
| Clinical utility of brain MRS imaging of patients with adult-onset non-cirrhotic hyperammonemia. | Stergachis AB, Krier JB, Merugumala SK, Berry GT, Lin AP | Molecular genetics and metabolism reports | 33763331 | Mol Genet Metab Rep | 2021 Jun |
| RNA polymerases reshape chromatin and coordinate transcription on individual fibers. | Tullius TW, Isaac RS, Ranchalis J, Dubocanin D, Churchman LS, Stergachis AB | bioRxiv : the preprint server for biology | 38187631 | bioRxiv | 2023 Dec 23 |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | Genome research | 38849157 | Genome Res | 2024 Nov 20 |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | bioRxiv : the preprint server for biology | 39026856 | bioRxiv | 2024 Jul 13 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis A, O'Toole E, Biggins S | bioRxiv : the preprint server for biology | 39975131 | bioRxiv | 2025 Jan 27 |
| Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition. | Vollger MR, Korlach J, Eldred KC, Swanson E, Underwood JG, Cheng YH, Ranchalis J, Mao Y, Blue EE, Schwarze U, Munson KM, Saunders CT, Wenger AM, Allworth A, Chanprasert S, Duerden BL, Glass I, Horike-Pyne M, Kim M, Leppig KA, McLaughlin IJ, Ogawa J, Rosenthal EA, Sheppeard S, Sherman SM, Strohbehn S, Yuen AL, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Reh TA, Byers PH, Bamshad MJ, Hisama FM, Jarvik GP, Sancak Y, Dipple KM, Stergachis AB | bioRxiv : the preprint server for biology | 37808736 | bioRxiv | 2023 Sep 27 |
| Stable centromere association of the yeast histone variant Cse4 requires its essential N-terminal domain. | Popchock AR, Hedouin S, Mao Y, Asbury CL, Stergachis AB, Biggins S | The EMBO journal | 39809842 | EMBO J | 2025 Mar |
| RNA polymerases reshape chromatin architecture and couple transcription on individual fibers. | Tullius TW, Isaac RS, Dubocanin D, Ranchalis J, Churchman LS, Stergachis AB | Molecular cell | 39191261 | Mol Cell | 2024 Sep 5 |
| Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. | Isaac RS, Tullius TW, Hansen KG, Dubocanin D, Couvillion M, Stergachis AB, Churchman LS | Nature structural & molecular biology | 38347148 | Nat Struct Mol Biol | 2024 Mar |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | Genome research | 39653420 | Genome Res | 2024 Dec 23 |
| Integrating Single-Molecule Sequencing and Deep Learning to Predict Haplotype-Specific 3D Chromatin Organization in a Mendelian Condition. | Dubocanin D, Kalygina A, Franklin JM, Chittenden C, Vollger MR, Neph S, Stergachis AB, Altemose N | bioRxiv : the preprint server for biology | 40166185 | bioRxiv | 2025 Mar 20 |
| Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics. | Nam AS, Chaligne R, Landau DA | Nature reviews. Genetics | 32807900 | Nat Rev Genet | 2021 Jan |
| CALR-mutated cells are vulnerable to combined inhibition of the proteasome and the endoplasmic reticulum stress response. | Jutzi JS, Marneth AE, Jiménez-Santos MJ, Hem J, Guerra-Moreno A, Rolles B, Bhatt S, Myers SA, Carr SA, Hong Y, Pozdnyakova O, van Galen P, Al-Shahrour F, Nam AS, Mullally A | Leukemia | 36473980 | Leukemia | 2023 Feb |
| Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation. | Nam AS, Dusaj N, Izzo F, Murali R, Myers RM, Mouhieddine TH, Sotelo J, Benbarche S, Waarts M, Gaiti F, Tahri S, Levine R, Abdel-Wahab O, Godley LA, Chaligne R, Ghobrial I, Landau DA | Nature genetics | 36138229 | Nat Genet | 2022 Oct |
| Transcripts of repetitive DNA elements signal to block phagocytosis of hematopoietic stem cells. | Pessoa Rodrigues C, Collins JM, Yang S, Martinez C, Kim JW, Lama C, Nam AS, Alt C, Lin C, Zon LI | Science (New York, N.Y.) | 39264994 | Science | 2024 Sep 13 |
| Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition. | Ho CM, Jih J, Lai M, Li X, Goldberg DE, Beck JR, Zhou ZH | Proceedings of the National Academy of Sciences of the United States of America | 34446549 | Proc Natl Acad Sci U S A | 2021 Aug 31 |
| Structural parasitology of the malaria parasite Plasmodium falciparum. | Anton L, Cobb DW, Ho CM | Trends in biochemical sciences | 34887149 | Trends Biochem Sci | 2022 Feb |
| Comparing the Use of DynaMed and UpToDate by Physician Trainees in Clinical Decision-Making: A Randomized Crossover Trial. | Baxter SL, Lander L, Clay B, Bell J, Hansen K, Walker A, Tai-Seale M | Applied clinical informatics | 35108739 | Appl Clin Inform | 2022 Jan |
| Impact of Pupil Dilation on Optical Coherence Tomography Angiography Retinal Microvasculature in Healthy Eyes. | Villatoro G, Bowd C, Proudfoot JA, Manalastas PIC, Nguyen KD, Hou H, Penteado RC, Li AJ, Moghimi S, Ghahari E, Weinreb RN, Zangwill LM | Journal of glaucoma | 32890106 | J Glaucoma | 2020 Nov |
| Racial, Ethnic, and Socioeconomic Disparities in Glaucoma Onset and Severity in a Diverse Nationwide Cohort in the United States. | Acuff K, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Journal of glaucoma | 37523618 | J Glaucoma | 2023 Sep 1 |
| Microperimetry Findings in Pentosan Polysulfate Maculopathy. | Most J, Kalaw FGP, Walker E, Arias JD, Charng J, Baxter SL, Nudleman E, Ferreyra H, Freeman WR, Chen FK, Borooah S | Ophthalmology. Retina | 37619623 | Ophthalmol Retina | 2023 Nov |
| Evaluating the neuroprotective impact of senolytic drugs on human vision. | El-Nimri NW, Moore SM, Zangwill LM, Proudfoot JA, Weinreb RN, Skowronska-Krawczyk D, Baxter SL | Scientific reports | 33303874 | Sci Rep | 2020 Dec 10 |
| Social determinants associated with loss of an eye in the United States using the All of Us nationwide database. | Chan AX, Radha Saseendrakumar B, Ozzello DJ, Ting M, Yoon JS, Liu CY, Korn BS, Kikkawa DO, Baxter SL | Orbit (Amsterdam, Netherlands) | 34969350 | Orbit | 2022 Dec |
| Novel Association between Opioid Use and Increased Risk of Retinal Vein Occlusion Using the National Institutes of Health All of Us Research Program. | McDermott JJ 4th, Lee TC, Chan AX, Ye GY, Shahrvini B, Saseendrakumar BR, Ferreyra H, Nudleman E, Baxter SL | Ophthalmology science | 35721456 | Ophthalmol Sci | 2022 Mar |
| Advancing Toward a Common Data Model in Ophthalmology: Gap Analysis of General Eye Examination Concepts to Standard Observational Medical Outcomes Partnership (OMOP) Concepts. | Cai CX, Halfpenny W, Boland MV, Lehmann HP, Hribar M, Goetz KE, Baxter SL | Ophthalmology science | 38025162 | Ophthalmol Sci | 2023 Dec |
| Proactive Decision Support for Glaucoma Treatment: Predicting Surgical Interventions with Clinically Available Data. | Christopher M, Gonzalez R, Huynh J, Walker E, Radha Saseendrakumar B, Bowd C, Belghith A, Goldbaum MH, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Weinreb RN, Baxter SL, Zangwill LM | Bioengineering (Basel, Switzerland) | 38391627 | Bioengineering (Basel) | 2024 Jan 30 |
| Federated Learning in Glaucoma: A Comprehensive Review and Future Perspectives. | Hallaj S, Chuter BG, Lieu AC, Singh P, Kalpathy-Cramer J, Xu BY, Christopher M, Zangwill LM, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39214457 | Ophthalmol Glaucoma | 2025 Jan-Feb |
| Glaucoma Detection and Feature Identification via GPT-4V Fundus Image Analysis. | Jalili J, Jiravarnsirikul A, Bowd C, Chuter B, Belghith A, Goldbaum MH, Baxter SL, Weinreb RN, Zangwill LM, Christopher M | Ophthalmology science | 39877464 | Ophthalmol Sci | 2025 Mar-Apr |
| Gaps in standards for integrating artificial intelligence technologies into ophthalmic practice. | Baxter SL, Lee AY | Current opinion in ophthalmology | 34231531 | Curr Opin Ophthalmol | 2021 Sep 1 |
| Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. | Wu Y, Olvera-Barrios A, Yanagihara R, Kung TH, Lu R, Leung I, Mishra AV, Nussinovitch H, Grimaldi G, Blazes M, Lee CS, Egan C, Tufail A, Lee AY | Ophthalmology | 36154868 | Ophthalmology | 2023 Feb |
| Healthcare Access and Utilization Among Glaucoma Patients in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of glaucoma | 36223287 | J Glaucoma | 2023 Jan 1 |
| Evaluation and Optimization of Diabetic Retinopathy Screenings for Uninsured Latinx Patients in a Resource-Limited Student-Run Free Clinic. | Bu JJ, Delavar A, Dayao JK, Lieu A, Chuter BG, Chen K, Nishihara T, Meller L, Camp AS, Lee JE, Baxter SL | Journal of student-run clinics | 38287932 | J Stud Run Clin | 2024 Jan 18 |
| Association of Electronic Health Record Inbasket Message Characteristics With Physician Burnout. | Baxter SL, Saseendrakumar BR, Cheung M, Savides TJ, Longhurst CA, Sinsky CA, Millen M, Tai-Seale M | JAMA network open | 36449288 | JAMA Netw Open | 2022 Nov 1 |
| Associations of smoking and alcohol consumption with the development of open angle glaucoma: a retrospective cohort study. | Mahmoudinezhad G, Nishida T, Weinreb RN, Baxter SL, Chang AC, Nikkhoy N, Walker E, Liebmann JM, Girkin CA, Moghimi S | BMJ open | 37793935 | BMJ Open | 2023 Oct 4 |
| Associations Between Thyroid Eye Disease and Glaucoma Among Those Enrolled in the National Institutes of Health All of Us Research Program. | Delavar A, Radha Saseendrakumar B, Lee TC, Topilow NJ, Ting MA, Liu CY, Korn BS, Weinreb RN, Kikkawa DO, Baxter SL | Ophthalmic plastic and reconstructive surgery | 36394556 | Ophthalmic Plast Reconstr Surg | 2023 Jul-Aug 01 |
| Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database. | Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY | Ophthalmic plastic and reconstructive surgery | 36727790 | Ophthalmic Plast Reconstr Surg | 2023 May-Jun 01 |
| Assessing Usability of Smartwatch Digital Health Devices for Home Blood Pressure Monitoring among Glaucoma Patients. | Bhanvadia SB, Brar MS, Delavar A, Tavakoli K, Saseendrakumar BR, Weinreb RN, Zangwill LM, Baxter SL | Informatics (MDPI) | 36873830 | Informatics (MDPI) | 2022 Dec |
| Racial Disparities in Barriers to Care for Patients With Diabetic Retinopathy in a Nationwide Cohort. | Huang BB, Radha Saseendrakumar B, Delavar A, Baxter SL | Translational vision science & technology | 36928128 | Transl Vis Sci Technol | 2023 Mar 1 |
| Social determinants of health and health disparities in glaucoma: A review. | Acuff K, Wu JH, Varkhedi V, Baxter SL | Clinical & experimental ophthalmology | 38385607 | Clin Exp Ophthalmol | 2024 Apr |
| Gap Analysis of Glaucoma Examination Concept Representations within Standard Systemized Nomenclature of Medicine - Clinical Terms. | Hallaj S, Khawaja AP, Rodrigues IAS, Boland MV, Brown EN, Chen A, Stagg BC, Stein JD, Sun CQ, Mahe-Cook AL, Swaminathan SS, Wang SY, Xu BY, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39147325 | Ophthalmol Glaucoma | 2025 Jan-Feb |
| Relationship Between Glaucoma and Chronic Stress Quantified by Allostatic Load Score in the All of Us Research Program. | Yoo K, Lee C, Baxter SL, Xu BY | American journal of ophthalmology | 39271092 | Am J Ophthalmol | 2025 Jan |
| Predictive Analytics for Glaucoma Using Data From the All of Us Research Program. | Baxter SL, Saseendrakumar BR, Paul P, Kim J, Bonomi L, Kuo TT, Loperena R, Ratsimbazafy F, Boerwinkle E, Cicek M, Clark CR, Cohn E, Gebo K, Mayo K, Mockrin S, Schully SD, Ramirez A, Ohno-Machado L, All of Us Research Program Investigators | American journal of ophthalmology | 33497675 | Am J Ophthalmol | 2021 Jul |
| Internal carotid artery aneurysm presenting as diplopia via telemedicine during COVID-19. | Baxter SL, Kuo DE, Robbins SL | Journal of telemedicine and telecare | 33412986 | J Telemed Telecare | 2022 May |
| Availability of Physical Activity Tracking Data from Wearable Devices for Glaucoma Patients. | Bhanvadia SB, Meller L, Madjedi K, Weinreb RN, Baxter SL | Information (Basel) | 37771713 | Information (Basel) | 2023 Sep |
| Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. | Kalaw FGP, Tavakoli K, Baxter SL | Ophthalmology science | 38025157 | Ophthalmol Sci | 2023 Dec |
| Towards effective data sharing in ophthalmology: data standardization and data privacy. | Halfpenny W, Baxter SL | Current opinion in ophthalmology | 35819893 | Curr Opin Ophthalmol | 2022 Sep 1 |
| Medication Affordability and Self-Advocacy Among Racial/Ethnic Minorities in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of general internal medicine | 35641727 | J Gen Intern Med | 2023 Jan |
| Ocular Health and National Data Standards: A Case for Including Visual Acuity in the United States Core Data for Interoperability (USCDI). | Baxter SL, Reed AA, Maa A, Boland MV, Borkar DS, Brown EN, Lum F, Goetz KE | Ophthalmology science | 36570621 | Ophthalmol Sci | 2022 Dec |
| Data Sources for Evaluating Health Disparities in Ophthalmology: Where We Are and Where We Need to Go. | Baxter SL, Nwanyanwu K, Legault G, Lee AY | Ophthalmology | 36058733 | Ophthalmology | 2022 Oct |
| Effects of Smoking on Optic Nerve Head Microvasculature Density in Glaucoma. | Eslani M, Nishida T, Weinreb RN, Baxter S, Mahmoudinezhad G, Kamalipour A, Yarmohammadi A, Zangwill LM, Moghimi S | Journal of glaucoma | 35882030 | J Glaucoma | 2022 Sep 1 |
| Trends and practices following the 2016 hydroxychloroquine screening guidelines. | Kalaw FGP, Arnett J, Baxter SL, Walker E, Pedersen B, Borooah S | Scientific reports | 37730825 | Sci Rep | 2023 Sep 20 |
| Evaluation of bias and gender/racial concordance based on sentiment analysis of narrative evaluations of clinical clerkships using natural language processing. | Bhanvadia S, Radha Saseendrakumar B, Guo J, Spadafore M, Daniel M, Lander L, Baxter SL | BMC medical education | 38491461 | BMC Med Educ | 2024 Mar 15 |
| Social Factors Associated with the Risk of Glaucoma Suspect Conversion to Glaucoma: Analysis of the Nationwide All of Us Program. | Wu JH, Halfpenny W, Bu J, Brar M, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 38959998 | Ophthalmol Glaucoma | 2024 Nov-Dec |
| RETINAL STRUCTURAL CHANGES AFTER CESSATION OF PENTOSAN POLYSULFATE SODIUM. | Kalaw FGP, Most J, Kako RN, Sharma P, Arias JD, Chen JS, Lin AC, Walker E, Bartsch DG, Baxter SL, Ferreyra H, Freeman WR, Borooah S | Retina (Philadelphia, Pa.) | 39174300 | Retina | 2024 Nov 1 |
| Implementation Mapping of the Collaborative University of California Teleophthalmology Initiative (CUTI): A Qualitative Study Using the Exploration, Preparation, Implementation, and Sustainment (EPIS) Framework. | Radgoudarzi N, Gregg C, Quackenbush Q, Yiu G, Freeby M, Su G, Baxter S, Thorne C, Willard-Grace R | Cureus | 39119397 | Cureus | 2024 Jul |
| A review of ophthalmology education in the era of generative artificial intelligence. | Heinke A, Radgoudarzi N, Huang BB, Baxter SL | Asia-Pacific journal of ophthalmology (Philadelphia, Pa.) | 39134176 | Asia Pac J Ophthalmol (Phila) | 2024 Jul-Aug |
| Barriers to Extracting and Harmonizing Glaucoma Testing Data: Gaps, Shortcomings, and the Pursuit of FAIRness. | Radgoudarzi N, Hallaj S, Boland MV, Stagg B, Wang SY, Xu B, Swaminathan SS, Brown EN, Chen A, Sun CQ, Amarasekera DC, Myers JS, Saifee M, Halfpenny W, Dirkes K, Zangwill L, Goetz KE, Hribar M, Baxter SL | Ophthalmology science | 39429240 | Ophthalmol Sci | 2024 Nov-Dec |
| Associations between Socioeconomic Factors and Visit Adherence among Patients with Glaucoma in the All of Us Research Program. | Acuff K, Delavar A, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 36746242 | Ophthalmol Glaucoma | 2023 Jul-Aug |
| Social Determinants of Health Data Availability for Patients with Eye Conditions. | Lee TC, Saseendrakumar BR, Nayak M, Chan AX, McDermott JJ 4th, Shahrvini B, Ye GY, Sitapati AM, Nebeker C, Baxter SL | Ophthalmology science | 35662804 | Ophthalmol Sci | 2022 Jun |
| Associations between healthcare utilization and access and diabetic retinopathy complications using All of Us nationwide survey data. | Chan AX, McDermott Iv JJ, Lee TC, Ye GY, Shahrvini B, Radha Saseendrakumar B, Baxter SL | PloS one | 35704625 | PLoS One | 2022 |
| Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. | Lee CS, Krakauer C, Su YR, Walker RL, Blazes M, McCurry SM, Bowen JD, McCormick WC, Lee AY, Boyko EJ, O'Hare AM, Larson EB, Crane PK | American journal of ophthalmology | 36513155 | Am J Ophthalmol | 2023 May |
| Review of glaucoma medication adherence monitoring in the digital health era. | Erras A, Shahrvini B, Weinreb RN, Baxter SL | The British journal of ophthalmology | 33858837 | Br J Ophthalmol | 2023 Feb |
| Investigation of associations between Piezo1 mechanoreceptor gain-of-function variants and glaucoma-related phenotypes in humans and mice. | Baxter SL, Keenan WT, Athanas AJ, Proudfoot JA, Zangwill LM, Ayyagari R, Liebmann JM, Girkin CA, Patapoutian A, Weinreb RN | Scientific reports | 33149214 | Sci Rep | 2020 Nov 4 |
| Usability and Clinician Acceptance of a Deep Learning-Based Clinical Decision Support Tool for Predicting Glaucomatous Visual Field Progression. | Chen JS, Baxter SL, van den Brandt A, Lieu A, Camp AS, Do JL, Welsbie DS, Moghimi S, Christopher M, Weinreb RN, Zangwill LM | Journal of glaucoma | 36877820 | J Glaucoma | 2023 Mar 1 |
| Impact of COVID-19 on the Delivery of Eye Care to Uninsured Diabetic Patients at a Student-Run Free Clinic: A Comprehensive Evaluation of Eye Clinic Performance. | Chuter BG, Lieu A, Dayao JKO, Bu JJ, Chen K, Nishihara T, Baxter SL | Journal of student-run clinics | 36890867 | J Stud Run Clin | 2022 Dec 20 |
| Retinal tissue and microvasculature loss in COVID-19 infection. | Kalaw FGP, Warter A, Cavichini M, Knight D, Li A, Deussen D, Galang C, Heinke A, Mendoza V, Borooah S, Baxter SL, Bartsch DU, Cheng L, Freeman WR | Scientific reports | 36991025 | Sci Rep | 2023 Mar 29 |
| Data Sciences and Visual Health Disparities. | Legault G, Nwanyanwu K, Baxter SL | Ophthalmology | 36058740 | Ophthalmology | 2022 Oct |
| Association Between Glucagon-Like Peptide-1 Receptor Agonists Exposure and Intraocular Pressure Change: GLP-1 Receptor Agonists and Intraocular Pressure Change. | Hallaj S, Halfpenny W, Chuter BG, Weinreb RN, Baxter SL, Cui QN | American journal of ophthalmology | 39237049 | Am J Ophthalmol | 2025 Jan |
| Ethical considerations for large language models in ophthalmology. | Kalaw FGP, Baxter SL | Current opinion in ophthalmology | 39259616 | Curr Opin Ophthalmol | 2024 Nov 1 |
| Variations in Using Diagnosis Codes for Defining Age-Related Macular Degeneration Cohorts. | Kalaw FGP, Chen JS, Baxter SL | Informatics (MDPI) | 40012991 | Informatics (MDPI) | 2024 Jun |
| Gender Disparities in Depression, Stress, and Social Support Among Glaucoma Patients. | Delavar A, Bu JJ, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Translational vision science & technology | 38149963 | Transl Vis Sci Technol | 2023 Dec 1 |
| Implementing clinical informatics tools for primary care-based diabetic retinopathy screening. | Baxter SL, Quackenbush Q, Cerda J, Gregg C, Millen M, Thorne C | The American journal of managed care | 36252175 | Am J Manag Care | 2022 Oct 1 |
| Social and Health Care Utilization Factors Associated With Ophthalmic Visit Nonadherence in Glaucoma: An All of Us Study. | Wu JH, Varkhedi V, Radha Saseendrakumar B, Acuff K, Weinreb RN, Baxter SL | Journal of glaucoma | 37671531 | J Glaucoma | 2023 Dec 1 |
| Effect of Interferon Gamma on Ebola Virus Infection of Primary Kupffer Cells and a Kupffer Cell Line. | Aguilar-Briseño JA, Elliff JM, Patten JJ, Wilson LR, Davey RA, Bailey AL, Maury WJ | Viruses | 37896854 | Viruses | 2023 Oct 11 |
| Hepatopathology of flaviviruses. | Bailey AL, Diamond MS | Journal of hepatology | 35981935 | J Hepatol | 2022 Dec |
| Development of a hydrogen peroxide-inactivated vaccine that protects against viscerotropic yellow fever in a non-human primate model. | Amanna IJ, Thomas A, Engelmann F, Hammarlund E, Raué HP, Bailey AL, Poore EA, Quintel BK, Lewis AD, Axthelm MK, Johnson AL, Colgin LMA, Diamond MS, Messaoudi I, Slifka MK | Cell reports. Medicine | 39019010 | Cell Rep Med | 2024 Jul 16 |
| Interactions of Non-Nutritive Artificial Sweeteners with the Microbiome in Metabolic Syndrome. | Harrington V, Lau L, Crits-Christoph A, Suez J | Immunometabolism | 35528135 | Immunometabolism | 2022 |
| Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome. | Crits-Christoph A, Hallowell HA, Koutouvalis K, Suez J | Gut microbes | 35332832 | Gut Microbes | 2022 Jan-Dec |
| Clonal Hematopoiesis of Indeterminate Potential Predicts Adverse Outcomes in Patients With Atherosclerotic Cardiovascular Disease. | Gumuser ED, Schuermans A, Cho SMJ, Sporn ZA, Uddin MM, Paruchuri K, Nakao T, Yu Z, Haidermota S, Hornsby W, Weeks LD, Niroula A, Jaiswal S, Libby P, Ebert BL, Bick AG, Natarajan P, Honigberg MC | Journal of the American College of Cardiology | 37197843 | J Am Coll Cardiol | 2023 May 23 |
| Hematopoietic mosaic chromosomal alterations increase the risk for diverse types of infection. | Zekavat SM, Lin SH, Bick AG, Liu A, Paruchuri K, Wang C, Uddin MM, Ye Y, Yu Z, Liu X, Kamatani Y, Bhattacharya R, Pirruccello JP, Pampana A, Loh PR, Kohli P, McCarroll SA, Kiryluk K, Neale B, Ionita-Laza I, Engels EA, Brown DW, Smoller JW, Green R, Karlson EW, Lebo M, Ellinor PT, Weiss ST, Daly MJ, Biobank Japan Project, FinnGen Consortium, Terao C, Zhao H, Ebert BL, Reilly MP, Ganna A, Machiela MJ, Genovese G, Natarajan P | Nature medicine | 34099924 | Nat Med | 2021 Jun |
| Clonal hematopoiesis associated with epigenetic aging and clinical outcomes. | Nachun D, Lu AT, Bick AG, Natarajan P, Weinstock J, Szeto MD, Kathiresan S, Abecasis G, Taylor KD, Guo X, Tracy R, Durda P, Liu Y, Johnson C, Rich SS, Van Den Berg D, Laurie C, Blackwell T, Papanicolaou GJ, Correa A, Raffield LM, Johnson AD, Murabito J, Manson JE, Desai P, Kooperberg C, Assimes TL, Levy D, Rotter JI, Reiner AP, Whitsel EA, Wilson JG, Horvath S, Jaiswal S, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium | Aging cell | 34050697 | Aging Cell | 2021 Jun |
| Clonal Somatic Mutations in Chronic Lung Diseases Are Associated with Reduced Lung Function. | Yun JH, Khan MAW, Ghosh A, Hobbs BD, Castaldi PJ, Hersh CP, Miller PG, Cool CD, Sciurba F, Barwick L, Limper AH, Flaherty K, Criner GJ, Brown K, Wise R, Martinez F, Silverman EK, DeMeo D, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Cho MH, Bick AG | American journal of respiratory and critical care medicine | 37788444 | Am J Respir Crit Care Med | 2023 Dec 1 |
| Association of Clonal Hematopoiesis of Indeterminate Potential with Incident Heart Failure with Preserved Ejection Fraction. | Reiner AP, Roberts MB, Honigberg MC, Kooperberg C, Desai P, Bick AG, Natarajan P, Manson JE, Whitsel EA, Eaton CB | medRxiv : the preprint server for health sciences | 37333361 | medRxiv | 2023 Jun 10 |
| Clonal Hematopoiesis of Indeterminate Potential: an Expanding Genetic Cause of Cardiovascular Disease. | Bhattacharya R, Bick AG | Current atherosclerosis reports | 34468876 | Curr Atheroscler Rep | 2021 Sep 1 |
| Clonal hematopoiesis and vascular disease. | Amancherla K, Wells JA 4th, Bick AG | Seminars in immunopathology | 35122117 | Semin Immunopathol | 2022 May |
| Whole Genome Sequence Analysis of the Plasma Proteome in Black Adults Provides Novel Insights Into Cardiovascular Disease. | Katz DH, Tahir UA, Bick AG, Pampana A, Ngo D, Benson MD, Yu Z, Robbins JM, Chen ZZ, Cruz DE, Deng S, Farrell L, Sinha S, Schmaier AA, Shen D, Gao Y, Hall ME, Correa A, Tracy RP, Durda P, Taylor KD, Liu Y, Johnson WC, Guo X, Yao J, Ida Chen YD, Manichaikul AW, Jain D, Bouchard C, Sarzynski MA, Rich SS, Rotter JI, Wang TJ, Wilson JG, Natarajan P, Gerszten RE, National Heart, Lung, and Blood Institute TOPMed (Trans-Omics for Precision Medicine) Consortium† | Circulation | 34814699 | Circulation | 2022 Feb |
| Germline genetics, disease, and exposure to medication influence longitudinal dynamics of clonal hematopoiesis. | Mack T, Pershad Y, Vlasschaert C, Bejan CA, Heimlich JB, Li Y, Mickels NA, Van Amburg JC, Ulloa J, Silver AJ, Luo LY, Jones A, Ferrell PB, Kishtagari A, Xu Y, Savona MR, Bick AG | Haematologica | 39540221 | Haematologica | 2025 Apr 1 |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJF, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun JH, DeMeo D, Levy D, Johnson AD, Mathias RA, Taub MA, Arnett D, North KE, Raffield LM, Carson AP, Doyle MF, Rich SS, Rotter JI, Guo X, Cox NJ, Roden DM, Franceschini N, Desai P, Reiner AP, Auer PL, Scheet PA, Jaiswal S, Weinstock JS, Bick AG | Nature communications | 38714703 | Nat Commun | 2024 May 7 |
| JAK2-mutant clonal hematopoiesis is associated with venous thromboembolism. | Zon RL, Sekar A, Clapham K, Oren O, Niroula A, Bick AG, Gibson CJ, Griffin G, Uddin MM, Neuberg D, Natarajan P, Ebert BL | Blood | 39102652 | Blood | 2024 Nov 14 |
| Long-term longitudinal analysis of 4,187 participants reveals insights into determinants of clonal hematopoiesis. | Uddin MM, Saadatagah S, Niroula A, Yu B, Hornsby WE, Ganesh S, Lannery K, Schuermans A, Honigberg MC, Bick AG, Libby P, Ebert BL, Ballantyne CM, Natarajan P | Nature communications | 39251642 | Nat Commun | 2024 Sep 9 |
| Variance quantitative trait loci reveal gene-gene interactions which alter blood traits. | Pershad Y, Poisner H, Corty RW, Hellwege JN, Bick AG | medRxiv : the preprint server for health sciences | 39371150 | medRxiv | 2024 Sep 19 |
| Salt and CHIP: Tet2-CH Aggravates Salt-Sensitive Hypertension in Mice. | Vlasschaert C, Crowley SD, Bick AG | Circulation research | 39388535 | Circ Res | 2024 Oct 11 |
| Age at Menopause, Leukocyte Telomere Length, and Coronary Artery Disease in Postmenopausal Women. | Schuermans A, Nakao T, Uddin MM, Hornsby W, Ganesh S, Shadyab AH, Liu S, Haring B, Shufelt CL, Taub MA, Mathias RA, Kooperberg C, Reiner AP, Bick AG, Manson JE, Natarajan P, Honigberg MC | Circulation research | 37489536 | Circ Res | 2023 Aug 18 |
| Genetic drivers and clinical consequences of mosaic chromosomal alterations in 1 million individuals. | Zhao K, Pershad Y, Poisner HM, Ma X, Quade K, Vlasschaert C, Mack T, Khankari NK, von Beck K, Brogan J, Kishtagari A, Corty RW, Li Y, Xu Y, Reiner AP, Scheet P, Auer PL, Bick AG | medRxiv : the preprint server for health sciences | 40093208 | medRxiv | 2025 Mar 6 |
| Germline risk of clonal haematopoiesis. | Silver AJ, Bick AG, Savona MR | Nature reviews. Genetics | 33986496 | Nat Rev Genet | 2021 Sep |
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| Increased Risk of Thoracic Aortic Aneurysms With JAK2 V617F. | Nakao T, Yu Z, Vlasschaert C, Uddin MM, Lindsay ME, Ellinor PT, Ebert BL, Bick AG, Pirruccello JP, Natarajan P | Journal of the American College of Cardiology | 37225367 | J Am Coll Cardiol | 2023 May 30 |
| The genetic determinants of recurrent somatic mutations in 43,693 blood genomes. | Weinstock JS, Laurie CA, Broome JG, Taylor KD, Guo X, Shuldiner AR, O'Connell JR, Lewis JP, Boerwinkle E, Barnes KC, Chami N, Kenny EE, Loos RJF, Fornage M, Redline S, Cade BE, Gilliland FD, Chen Z, Gauderman WJ, Kumar R, Grammer L, Schleimer RP, Psaty BM, Bis JC, Brody JA, Silverman EK, Yun JH, Qiao D, Weiss ST, Lasky-Su J, DeMeo DL, Palmer ND, Freedman BI, Bowden DW, Cho MH, Vasan RS, Johnson AD, Yanek LR, Becker LC, Kardia S, He J, Kaplan R, Heckbert SR, Smith NL, Wiggins KL, Arnett DK, Irvin MR, Tiwari H, Correa A, Raffield LM, Gao Y, de Andrade M, Rotter JI, Rich SS, Manichaikul AW, Konkle BA, Johnsen JM, Wheeler MM, Custer BS, Duggirala R, Curran JE, Blangero J, Gui H, Xiao S, Williams LK, Meyers DA, Li X, Ortega V, McGarvey S, Gu CC, Chen YI, Lee WJ, Shoemaker MB, Darbar D, Roden D, Albert C, Kooperberg C, Desai P, Blackwell TW, Abecasis GR, Smith AV, Kang HM, Mathias R, Natarajan P, Jaiswal S, Reiner AP, Bick AG, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium | Science advances | 37126548 | Sci Adv | 2023 Apr 28 |
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| Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood. | Schuermans A, Nakao T, Ruan Y, Koyama S, Yu Z, Uddin MM, Haidermota S, Hornsby W, Lewandowski AJ, Bick AG, Niroula A, Jaiswal S, Ebert BL, Natarajan P, Honigberg MC | Journal of the American Heart Association | 37345823 | J Am Heart Assoc | 2023 Jul 4 |
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| Clonal Hematopoiesis Is Associated With Higher Risk of Stroke. | Bhattacharya R, Zekavat SM, Haessler J, Fornage M, Raffield L, Uddin MM, Bick AG, Niroula A, Yu B, Gibson C, Griffin G, Morrison AC, Psaty BM, Longstreth WT, Bis JC, Rich SS, Rotter JI, Tracy RP, Correa A, Seshadri S, Johnson A, Collins JM, Hayden KM, Madsen TE, Ballantyne CM, Jaiswal S, Ebert BL, Kooperberg C, Manson JE, Whitsel EA, NHLBI Trans-Omics for Precision Medicine Program, Natarajan P, Reiner AP | Stroke | 34743536 | Stroke | 2022 Mar |
| Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. | Bick AG, Popadin K, Thorball CW, Uddin MM, Zanni MV, Yu B, Cavassini M, Rauch A, Tarr P, Schmid P, Bernasconi E, Günthard HF, Libby P, Boerwinkle E, McLaren PJ, Ballantyne CM, Grinspoon S, Natarajan P, Fellay J, Swiss HIV Cohort Study | Scientific reports | 35022435 | Sci Rep | 2022 Jan 12 |
| Association of Diet Quality With Prevalence of Clonal Hematopoiesis and Adverse Cardiovascular Events. | Bhattacharya R, Zekavat SM, Uddin MM, Pirruccello J, Niroula A, Gibson C, Griffin GK, Libby P, Ebert BL, Bick A, Natarajan P | JAMA cardiology | 34106216 | JAMA Cardiol | 2021 Sep 1 |
| Clonal Hematopoiesis of Indeterminate Potential and Kidney Function Decline in the General Population. | Kestenbaum B, Bick AG, Vlasschaert C, Rauh MJ, Lanktree MB, Franceschini N, Shoemaker MB, Harris RC Jr, Psaty BM, Köttgen A, Natarajan P, Robinson-Cohen C | American journal of kidney diseases : the official journal of the National Kidney Foundation | 36241009 | Am J Kidney Dis | 2023 Mar |
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| Somatic Mutations in Cardiovascular Disease. | Heimlich JB, Bick AG | Circulation research | 34995138 | Circ Res | 2022 Jan 7 |
| VEXAS-Defining UBA1 Somatic Variants in 245,368 Diverse Individuals in the NIH All Of Us Cohort. | Corty RW, Brogan J, Byram K, Springer J, Grayson PC, Bick AG | Arthritis & rheumatology (Hoboken, N.J.) | 38225170 | Arthritis Rheumatol | 2024 Jun |
| Clonal Hematopoiesis Risk Score and All-Cause and Cardiovascular Mortality in Older Adults. | Saadatagah S, Uddin MM, Weeks LD, Niroula A, Ru M, Takahashi K, Gondek L, Yu B, Bick AG, Ebert BL, Platz EA, Natarajan P, Ballantyne CM | JAMA network open | 38231513 | JAMA Netw Open | 2024 Jan 2 |
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| Genetic Interleukin-6 Receptor Variant Is Not Associated With Rejection and Mortality After Heart Transplantation. | Amancherla K, Schlendorf KH, Vlasschaert C, Lowery BD, Wells QS, See SB, Zorn E, Colombo PC, Reilly MP, Lindenfeld J, Uriel N, Shah RV, Freedman JE, Moslehi J, Bick AG, Clerkin K | Journal of cardiac failure | 38367904 | J Card Fail | 2024 Jun |
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| Interleukin-6 Receptor Polymorphism Attenuates Clonal Hematopoiesis-Mediated Coronary Artery Disease Risk Among 451 180 Individuals in the UK Biobank. | Vlasschaert C, Heimlich JB, Rauh MJ, Natarajan P, Bick AG | Circulation | 36689568 | Circulation | 2023 Jan 24 |
| Mendelian randomization supports bidirectional causality between telomere length and clonal hematopoiesis of indeterminate potential. | Nakao T, Bick AG, Taub MA, Zekavat SM, Uddin MM, Niroula A, Carty CL, Lane J, Honigberg MC, Weinstock JS, Pampana A, Gibson CJ, Griffin GK, Clarke SL, Bhattacharya R, Assimes TL, Emery LS, Stilp AM, Wong Q, Broome J, Laurie CA, Khan AT, Smith AV, Blackwell TW, Codd V, Nelson CP, Yoneda ZT, Peralta JM, Bowden DW, Irvin MR, Boorgula M, Zhao W, Yanek LR, Wiggins KL, Hixson JE, Gu CC, Peloso GM, Roden DM, Reupena MS, Hwu CM, DeMeo DL, North KE, Kelly S, Musani SK, Bis JC, Lloyd-Jones DM, Johnsen JM, Preuss M, Tracy RP, Peyser PA, Qiao D, Desai P, Curran JE, Freedman BI, Tiwari HK, Chavan S, Smith JA, Smith NL, Kelly TN, Hidalgo B, Cupples LA, Weeks DE, Hawley NL, Minster RL, Samoan Obesity, Lifestyle and Genetic Adaptations Study (OLaGA) Group, Deka R, Naseri TT, de las Fuentes L, Raffield LM, Morrison AC, Vries PS, Ballantyne CM, Kenny EE, Rich SS, Whitsel EA, Cho MH, Shoemaker MB, Pace BS, Blangero J, Palmer ND, Mitchell BD, Shuldiner AR, Barnes KC, Redline S, Kardia SLR, Abecasis GR, Becker LC, Heckbert SR, He J, Post W, Arnett DK, Vasan RS, Darbar D, Weiss ST, McGarvey ST, de Andrade M, Chen YI, Kaplan RC, Meyers DA, Custer BS, Correa A, Psaty BM, Fornage M, Manson JE, Boerwinkle E, Konkle BA, Loos RJF, Rotter JI, Silverman EK, Kooperberg C, Danesh J, Samani NJ, Jaiswal S, Libby P, Ellinor PT, Pankratz N, Ebert BL, Reiner AP, Mathias RA, Do R, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Natarajan P | Science advances | 35385311 | Sci Adv | 2022 Apr 8 |
| Patient-specific comorbidities as prognostic variables for survival in myelofibrosis. | Sochacki AL, Bejan CA, Zhao S, Patel A, Kishtagari A, Spaulding TP, Silver AJ, Stockton SS, Pugh K, Dorand RD, Bhatta M, Strayer N, Zhang S, Snider CA, Stricker T, Nazha A, Bick AG, Xu Y, Savona MR | Blood advances | 35420683 | Blood Adv | 2023 Mar 14 |
| Premature Menopause, Clonal Hematopoiesis, and Coronary Artery Disease in Postmenopausal Women. | Honigberg MC, Zekavat SM, Niroula A, Griffin GK, Bick AG, Pirruccello JP, Nakao T, Whitsel EA, Farland LV, Laurie C, Kooperberg C, Manson JE, Gabriel S, Libby P, Reiner AP, Ebert BL, NHLBI Trans-Omics for Precision Medicine Program, Natarajan P | Circulation | 33161765 | Circulation | 2021 Feb 2 |
| Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells. | Bao EL, Nandakumar SK, Liao X, Bick AG, Karjalainen J, Tabaka M, Gan OI, Havulinna AS, Kiiskinen TTJ, Lareau CA, de Lapuente Portilla AL, Li B, Emdin C, Codd V, Nelson CP, Walker CJ, Churchhouse C, de la Chapelle A, Klein DE, Nilsson B, Wilson PWF, Cho K, Pyarajan S, Gaziano JM, Samani NJ, FinnGen, 23andMe Research Team, Regev A, Palotie A, Neale BM, Dick JE, Natarajan P, O'Donnell CJ, Daly MJ, Milyavsky M, Kathiresan S, Sankaran VG | Nature | 33057200 | Nature | 2020 Oct |
| Hematopoietic mosaic chromosomal alterations and risk for infection among 767,891 individuals without blood cancer. | Zekavat SM, Lin SH, Bick AG, Liu A, Paruchuri K, Uddin MM, Ye Y, Yu Z, Liu X, Kamatani Y, Pirruccello JP, Pampana A, Loh PR, Kohli P, McCarroll SA, Neale B, Engels EA, Brown DW, Smoller JW, Green R, Karlson EW, Lebo M, Ellinor PT, Weiss ST, Daly MJ, Biobank Japan Project, FinnGen Consortium, Terao C, Zhao H, Ebert BL, COVID-19 Host Genetics Initiative, Ganna A, Machiela MJ, Genovese G, Natarajan P | medRxiv : the preprint server for health sciences | 33236019 | medRxiv | 2020 Nov 16 |
| Clonal hematopoiesis is associated with protection from Alzheimer's disease. | Bouzid H, Belk JA, Jan M, Qi Y, Sarnowski C, Wirth S, Ma L, Chrostek MR, Ahmad H, Nachun D, Yao W, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Beiser A, Bick AG, Bis JC, Fornage M, Longstreth WT Jr, Lopez OL, Natarajan P, Psaty BM, Satizabal CL, Weinstock J, Larson EB, Crane PK, Keene CD, Seshadri S, Satpathy AT, Montine TJ, Jaiswal S | Nature medicine | 37322115 | Nat Med | 2023 Jul |
| Clonal hematopoiesis in sickle cell disease. | Liggett LA, Cato LD, Weinstock JS, Zhang Y, Nouraie SM, Gladwin MT, Garrett ME, Ashley-Koch A, Telen MJ, Custer B, Kelly S, Dinardo CL, Sabino EC, Loureiro P, Carneiro-Proietti AB, Maximo C, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Reiner AP, Abecasis GR, Williams DA, Natarajan P, Bick AG, Sankaran VG | The Journal of clinical investigation | 34990411 | J Clin Invest | 2022 Feb 15 |
| Clonal hematopoiesis of indeterminate potential and outcomes after heart transplantation: A multicenter study. | Amancherla K, Schlendorf KH, Vlasschaert C, Lowery BD, Wells QS, See SB, Zorn E, Colombo PC, Reilly MP, Lindenfeld J, Uriel N, Freedman JE, Shah RV, Moslehi J, Bick AG, Clerkin K | American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons | 37156299 | Am J Transplant | 2023 Aug |
| Demonstrating paths for unlocking the value of cloud genomics through cross cohort analysis. | Deflaux N, Selvaraj MS, Condon HR, Mayo K, Haidermota S, Basford MA, Lunt C, Philippakis AA, Roden DM, Denny JC, Musick A, Collins R, Allen N, Effingham M, Glazer D, Natarajan P, Bick AG | Nature communications | 37669985 | Nat Commun | 2023 Sep 5 |
| Mosaic chromosomal alterations in blood across ancestries using whole-genome sequencing. | Jakubek YA, Zhou Y, Stilp A, Bacon J, Wong JW, Ozcan Z, Arnett D, Barnes K, Bis JC, Boerwinkle E, Brody JA, Carson AP, Chasman DI, Chen J, Cho M, Conomos MP, Cox N, Doyle MF, Fornage M, Guo X, Kardia SLR, Lewis JP, Loos RJF, Ma X, Machiela MJ, Mack TM, Mathias RA, Mitchell BD, Mychaleckyj JC, North K, Pankratz N, Peyser PA, Preuss MH, Psaty B, Raffield LM, Vasan RS, Redline S, Rich SS, Rotter JI, Silverman EK, Smith JA, Smith AP, Taub M, Taylor KD, Yun J, Li Y, Desai P, Bick AG, Reiner AP, Scheet P, Auer PL | Nature genetics | 37904051 | Nat Genet | 2023 Nov |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJ, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun J, DeMeo D, Levy D, Johnson A, Mathias R, Taub M, Arnett D, North K, Raffield LM, Carson A, Doyle MF, Rich SS, Rotter JI, Guo X, Cox N, Roden DM, Franceschini N, Desai P, Reiner A, Auer PL, Scheet P, Jaiswal S, Weinstock JS, Bick AG | medRxiv : the preprint server for health sciences | 37905118 | medRxiv | 2023 Oct 21 |
| Driver mutation zygosity is a critical factor in predicting clonal hematopoiesis transformation risk. | Kishtagari A, Khan MAW, Li Y, Vlasschaert C, Marneni N, Silver AJ, von Beck K, Spaulding T, Stockton S, Snider C, Sochacki A, Dorand D, Mack TM, Ferrell PB Jr, Xu Y, Bejan CA, Savona MR, Bick AG | Blood cancer journal | 38225345 | Blood Cancer J | 2024 Jan 15 |
| Genetic determinants and phenotypic consequences of blood T-cell proportions in 207,000 diverse individuals. | Poisner H, Faucon A, Cox N, Bick AG | Nature communications | 39112476 | Nat Commun | 2024 Aug 7 |
| Privacy-preserving genotype imputation in a trusted execution environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Cell systems | 34450045 | Cell Syst | 2021 Oct 20 |
| Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption. | Froelicher D, Troncoso-Pastoriza JR, Raisaro JL, Cuendet MA, Sousa JS, Cho H, Berger B, Fellay J, Hubaux JP | Nature communications | 34635645 | Nat Commun | 2021 Oct 11 |
| Privacy-Preserving Genotype Imputation in a Trusted Execution Environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 34859247 | Res Comput Mol Biol | 2021 Oct 20 |
| Privacy-Enhancing Technologies in Biomedical Data Science. | Cho H, Froelicher D, Dokmai N, Nandi A, Sadhuka S, Hong MM, Berger B | Annual review of biomedical data science | 39178425 | Annu Rev Biomed Data Sci | 2024 Aug |
| Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 39027313 | Res Comput Mol Biol | 2024 Apr-May |
| sfkit: a web-based toolkit for secure and federated genomic analysis. | Mendelsohn S, Froelicher D, Loginov D, Bernick D, Berger B, Cho H | Nucleic acids research | 37246709 | Nucleic Acids Res | 2023 Jul 5 |
| k-SALSA: k-anonymous synthetic averaging of retinal images via local style alignment. | Jeon M, Park H, Kim HJ, Morley M, Cho H | Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision | 37525827 | Comput Vis ECCV | 2022 Oct |
| Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing. | Smajlović H, Shajii A, Berger B, Cho H, Numanagić I | Genome biology | 36631897 | Genome Biol | 2023 Jan 11 |
| Scalable and Privacy-Preserving Federated Principal Component Analysis. | Froelicher D, Cho H, Edupalli M, Sousa JS, Bossuat JP, Pyrgelis A, Troncoso-Pastoriza JR, Berger B, Hubaux JP | Proceedings. IEEE Symposium on Security and Privacy | 38665901 | Proc IEEE Symp Secur Priv | 2023 May |
| Mechanisms for Hiding Sensitive Genotypes with Information-Theoretic Privacy. | Ye F, Cho H, Rouayheb SE | IEEE transactions on information theory | 37283781 | IEEE Trans Inf Theory | 2022 Jun |
| Reconstruction of private genomes through reference-based genotype imputation. | Mosca MJ, Cho H | Genome biology | 38053191 | Genome Biol | 2023 Dec 6 |
| Assessing transcriptomic reidentification risks using discriminative sequence models. | Sadhuka S, Fridman D, Berger B, Cho H | Genome research | 37541758 | Genome Res | 2023 Jul |
| Secure discovery of genetic relatives across large-scale and distributed genomic data sets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Genome research | 39111815 | Genome Res | 2024 Oct 11 |
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| A Recurrent Neural Network Provides Stable Across-Day Prosthetic Control for a Human Amputee with Implanted Intramuscular Electromyographic Recording Leads. | Thomson CJ, Clark GA, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892525 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov |
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| Understanding local plant extinctions before it is too late: bridging evolutionary genomics with global ecology. | Exposito-Alonso M | The New phytologist | 36604850 | New Phytol | 2023 Mar |
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| Mutation bias reflects natural selection in Arabidopsis thaliana. | Monroe JG, Srikant T, Carbonell-Bejerano P, Becker C, Lensink M, Exposito-Alonso M, Klein M, Hildebrandt J, Neumann M, Kliebenstein D, Weng ML, Imbert E, Ågren J, Rutter MT, Fenster CB, Weigel D | Nature | 35022609 | Nature | 2022 Feb |
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| A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. | Dorone Y, Boeynaems S, Flores E, Jin B, Hateley S, Bossi F, Lazarus E, Pennington JG, Michiels E, De Decker M, Vints K, Baatsen P, Bassel GW, Otegui MS, Holehouse AS, Exposito-Alonso M, Sukenik S, Gitler AD, Rhee SY | Cell | 34233164 | Cell | 2021 Aug 5 |
| Century-long timelines of herbarium genomes predict plant stomatal response to climate change. | Lang PLM, Erberich JM, Lopez L, Weiß CL, Amador G, Fung HF, Latorre SM, Lasky JR, Burbano HA, Expósito-Alonso M, Bergmann DC | Nature ecology & evolution | 39117952 | Nat Ecol Evol | 2024 Sep |
| Mixed-dimensional MXene-hydrogel heterostructures for electronic skin sensors with ultrabroad working range. | Cai Y, Shen J, Yang CW, Wan Y, Tang HL, Aljarb AA, Chen C, Fu JH, Wei X, Huang KW, Han Y, Jonas SJ, Dong X, Tung V | Science advances | 33246950 | Sci Adv | 2020 Nov |
| Lipid-Bicelle-Coated Microfluidics for Intracellular Delivery with Reduced Fouling. | Belling JN, Heidenreich LK, Park JH, Kawakami LM, Takahashi J, Frost IM, Gong Y, Young TD, Jackman JA, Jonas SJ, Cho NJ, Weiss PS | ACS applied materials & interfaces | 32940030 | ACS Appl Mater Interfaces | 2020 Oct 14 |
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| Self-Powered Programming of Fibroblasts into Neurons via a Scalable Magnetoelastic Generator Array. | Libanori A, Soto J, Xu J, Song Y, Zarubova J, Tat T, Xiao X, Yue SZ, Jonas SJ, Li S, Chen J | Advanced materials (Deerfield Beach, Fla.) | 36468617 | Adv Mater | 2023 Feb |
| Exploring the Bottom-Up Growth of Anisotropic Gold Nanoparticles from Substrate-Bound Seeds in Microfluidic Reactors. | Vinnacombe-Willson GA, Lee JK, Chiang N, Scarabelli L, Yue S, Foley R, Frost I, Weiss PS, Jonas SJ | ACS applied nano materials | 37152920 | ACS Appl Nano Mater | 2023 Apr 28 |
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| Dual Supramolecular Nanoparticle Vectors Enable CRISPR/Cas9-Mediated Knockin of Retinoschisin 1 Gene-A Potential Nonviral Therapeutic Solution for X-Linked Juvenile Retinoschisis. | Chou SJ, Yang P, Ban Q, Yang YP, Wang ML, Chien CS, Chen SJ, Sun N, Zhu Y, Liu H, Hui W, Lin TC, Wang F, Zhang RY, Nguyen VQ, Liu W, Chen M, Jonas SJ, Weiss PS, Tseng HR, Chiou SH | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 32440478 | Adv Sci (Weinh) | 2020 May |
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| Fluorinated Silane-Modified Filtroporation Devices Enable Gene Knockout in Human Hematopoietic Stem and Progenitor Cells. | Frost IM, Mendoza AM, Chiou TT, Kim P, Aizenberg J, Kohn DB, De Oliveira SN, Weiss PS, Jonas SJ | ACS applied materials & interfaces | 37616579 | ACS Appl Mater Interfaces | 2023 Sep 6 |
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| Pathogenic ATM Mutations in Cancer and a Genetic Basis for Radiotherapeutic Efficacy. | Pitter KL, Casey DL, Lu YC, Hannum M, Zhang Z, Song X, Pecorari I, McMillan B, Ma J, Samstein RM, Pei IX, Khan AJ, Braunstein LZ, Morris LGT, Barker CA, Rimner A, Alektiar KM, Romesser PB, Crane CH, Yahalom J, Zelefsky MJ, Scher HI, Bernstein JL, Mandelker DL, Weigelt B, Reis-Filho JS, Lee NY, Powell SN, Chan TA, Riaz N, Setton J | Journal of the National Cancer Institute | 32726432 | J Natl Cancer Inst | 2021 Mar 1 |
| Mutations in BRCA1 and BRCA2 differentially affect the tumor microenvironment and response to checkpoint blockade immunotherapy. | Samstein RM, Krishna C, Ma X, Pei X, Lee KW, Makarov V, Kuo F, Chung J, Srivastava RM, Purohit TA, Hoen DR, Mandal R, Setton J, Wu W, Shah R, Qeriqi B, Chang Q, Kendall S, Braunstein L, Weigelt B, Blecua Carrillo Albornoz P, Morris LGT, Mandelker DL, Reis-Filho JS, de Stanchina E, Powell SN, Chan TA, Riaz N | Nature cancer | 33834176 | Nat Cancer | 2021 Dec |
| Shared Immunogenic Poly-Epitope Frameshift Mutations in Microsatellite Unstable Tumors. | Roudko V, Bozkus CC, Orfanelli T, McClain CB, Carr C, O'Donnell T, Chakraborty L, Samstein R, Huang KL, Blank SV, Greenbaum B, Bhardwaj N | Cell | 33259803 | Cell | 2020 Dec 10 |
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| Laparoscopic Photoacoustic Imaging System Based on Side-Illumination Diffusing Fibers. | Gao S, Jiang Y, Li M, Wang Y, Shen Y, Flegal MC, Nephew BC, Fischer GS, Liu Y, Fichera L, Zhang HK | IEEE transactions on bio-medical engineering | 37224375 | IEEE Trans Biomed Eng | 2023 Nov |
| Feasibility of Robot-Assisted Ultrasound Imaging with Force Feedback for Assessment of Thyroid Diseases. | Kaminski JT, Rafatzand K, Zhang HK | Proceedings of SPIE--the International Society for Optical Engineering | 32742057 | Proc SPIE Int Soc Opt Eng | 2020 Feb |
| Ring-arrayed Forward-viewing Ultrasound Imaging System: A Feasibility Study. | Tsumura R, Vang DP, Hata N, Zhang HK | Proceedings of SPIE--the International Society for Optical Engineering | 32782420 | Proc SPIE Int Soc Opt Eng | 2020 Feb |
| Actuated Reflector-Based 3-D Ultrasound Imaging With Synthetic Aperture Focusing. | Tang Y, Tsumura R, Kaminski JT, Zhang HK | IEEE transactions on ultrasonics, ferroelectrics, and frequency control | 35675232 | IEEE Trans Ultrason Ferroelectr Freq Control | 2022 Aug |
| Large Area Kidney Imaging for Pre-transplant Evaluation using Real-Time Robotic Optical Coherence Tomography. | Ma X, Moradi M, Ma X, Tang Q, Levi M, Chen Y, Zhang HK | Research square | 37886456 | Res Sq | 2023 Oct 16 |
| Large area kidney imaging for pre-transplant evaluation using real-time robotic optical coherence tomography. | Ma X, Moradi M, Ma X, Tang Q, Levi M, Chen Y, Zhang HK | Communications engineering | 39223332 | Commun Eng | 2024 Sep 2 |
| Acoustic-resolution photoacoustic microscope based on compact and low-cost delta configuration actuator. | Gao S, Tsumura R, Vang DP, Bisland K, Xu K, Tsunoi Y, Zhang HK | Ultrasonics | 34474357 | Ultrasonics | 2022 Jan |
| Enhancing boundary detection of radiofrequency ablation lesions through photoacoustic mapping. | Gao S, Liu H, Post A, Jaworski L, Bernard D, John M, Cosgriff-Hernandez E, Razavi M, Zhang HK | Scientific reports | 39169048 | Sci Rep | 2024 Aug 21 |
| An economic photoacoustic imaging platform using automatic laser synchronization and inverse beamforming. | Wu Y, Zhang HK, Kang J, Boctor EM | Ultrasonics | 32105781 | Ultrasonics | 2020 Apr |
| Tele-Operative Low-Cost Robotic Lung Ultrasound Scanning Platform for Triage of COVID-19 Patients. | Tsumura R, Hardin JW, Bimbraw K, Grossestreuer AV, Odusanya OS, Zheng Y, Hill JC, Hoffmann B, Soboyejo W, Zhang HK | IEEE robotics and automation letters | 34532570 | IEEE Robot Autom Lett | 2021 Jul |
| Anatomical Feature-Based Lung Ultrasound Image Quality Assessment Using Deep Convolutional Neural Network. | Ravishankar SM, Tsumura R, Hardin JW, Hoffmann B, Zhang Z, Zhang HK | IEEE International Ultrasonics Symposium : [proceedings]. IEEE International Ultrasonics Symposium | 35966447 | IEEE Int Ultrason Symp | 2021 Sep |
| Needle Aligned Ultrasound Image-Guided Access Through Dual-Segment Array. | Rahaman A, Tang Y, Gao S, Ma X, Sorokin I, Zhang HK | IEEE transactions on bio-medical engineering | 37030673 | IEEE Trans Biomed Eng | 2023 Sep |
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| A-SEE: Active-Sensing End-effector Enabled Probe Self-Normal-Positioning for Robotic Ultrasound Imaging Applications. | Ma X, Kuo WY, Yang K, Rahaman A, Zhang HK | IEEE robotics and automation letters | 37325198 | IEEE Robot Autom Lett | 2022 Oct |
| Intraoperative laparoscopic photoacoustic image guidance system in the da Vinci surgical system. | Gao S, Wang Y, Ma X, Zhou H, Jiang Y, Yang K, Lu L, Wang S, Nephew BC, Fichera L, Fischer GS, Zhang HK | Biomedical optics express | 37791285 | Biomed Opt Express | 2023 Sep 1 |
| Intraoperative Ablation Control Based on Real-Time Necrosis Monitoring Feedback: Numerical Evaluation. | Murakami R, Mori S, Zhang HK | Annals of biomedical engineering | 39133389 | Ann Biomed Eng | 2024 Dec |
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| The Role of Antennae in Heat Detection and Feeding Behavior in the Bed Bug (Hemiptera: Cimicidae). | Gaire S, Schal C, Mick R, DeVries Z | Journal of economic entomology | 33128451 | J Econ Entomol | 2020 Dec 9 |
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| Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages. | Acheampong KK, Schaff DL, Emert BL, Lake J, Reffsin S, Shea EK, Comar CE, Litzky LA, Khurram NA, Linn RL, Feldman M, Weiss SR, Montone KT, Cherry S, Shaffer SM | mBio | 35130722 | mBio | 2021 Feb 22 |
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| Cancer-associated fibroblasts maintain critical pancreatic cancer cell lipid homeostasis in the tumor microenvironment. | Han X, Burrows M, Kim LC, Xu JP, Vostrejs W, Van Le TN, Poltorack C, Jiang Y, Cukierman E, Stanger BZ, Reiss KA, Shaffer SM, Mesaros C, Keith B, Simon MC | Cell reports | 39535921 | Cell Rep | 2024 Nov 26 |
| Integrating mutational and nonmutational mechanisms of acquired therapy resistance within the Darwinian paradigm. | Vander Velde R, Shaffer S, Marusyk A | Trends in cancer | 35307314 | Trends Cancer | 2022 Jun |
| IGF2BP1/IMP1 Deletion Enhances a Facultative Stem Cell State via Regulation of MAP1LC3B. | Parham LR, Williams PA, Katada K, Nettleford SK, Chatterji P, Acheampong KK, Danan CH, Ma X, Simon LA, Naughton KE, Mizuno R, Karakasheva T, McMillan EA, Whelan KA, Brady DC, Shaffer SM, Hamilton KE | Cellular and molecular gastroenterology and hepatology | 38081361 | Cell Mol Gastroenterol Hepatol | 2024 |
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| Disrupting cellular memory to overcome drug resistance. | Harmange G, Hueros RAR, Schaff DL, Emert B, Saint-Antoine M, Kim LC, Niu Z, Nellore S, Fane ME, Alicea GM, Weeraratna AT, Simon MC, Singh A, Shaffer SM | Nature communications | 37932277 | Nat Commun | 2023 Nov 6 |
| Advancements in APOE and dementia research: Highlights from the 2023 AAIC Advancements: APOE conference. | Kloske CM, Belloy ME, Blue EE, Bowman GR, Carrillo MC, Chen X, Chiba-Falek O, Davis AA, Paolo GD, Garretti F, Gate D, Golden LR, Heinecke JW, Herz J, Huang Y, Iadecola C, Johnson LA, Kanekiyo T, Karch CM, Khvorova A, Koppes-den Hertog SJ, Lamb BT, Lawler PE, Guen YL, Litvinchuk A, Liu CC, Mahinrad S, Marcora E, Marino C, Michaelson DM, Miller JJ, Morganti JM, Narayan PS, Naslavsky MS, Oosthoek M, Ramachandran KV, Ramakrishnan A, Raulin AC, Robert A, Saleh RNM, Sexton C, Shah N, Shue F, Sible IJ, Soranno A, Strickland MR, Tcw J, Thierry M, Tsai LH, Tuckey RA, Ulrich JD, van der Kant R, Wang N, Wellington CL, Weninger SC, Yassine HN, Zhao N, Bu G, Goate AM, Holtzman DM | Alzheimer's & dementia : the journal of the Alzheimer's Association | 39031528 | Alzheimers Dement | 2024 Sep |
| Regulation of synapse density by Pumilio RNA-binding proteins. | Randolph LK, Pauers MM, Martínez JC, Sibener LJ, Zrzavy MA, Sharif NA, Gonzalez TM, Ramachandran KV, Dominguez D, Hengst U | Cell reports | 39298318 | Cell Rep | 2024 Oct 22 |
| A coagulation defect arising from heterozygous premature termination of tissue factor. | Schulman S, El-Darzi E, Florido MH, Friesen M, Merrill-Skoloff G, Brake MA, Schuster CR, Lin L, Westrick RJ, Cowan CA, Flaumenhaft R, NIHR BioResource, Ouwehand WH, Peerlinck K, Freson K, Turro E, Furie B | The Journal of clinical investigation | 32663190 | J Clin Invest | 2020 Oct 1 |
| Human Genetic Variation in F3 and Its Impact on Tissue Factor-Dependent Disease. | Park JK, Brake MA, Schulman S | Seminars in thrombosis and hemostasis | 37201535 | Semin Thromb Hemost | 2024 Mar |
| TMEM16E regulates endothelial cell procoagulant activity and thrombosis. | Schmaier AA, Anderson PF, Chen SM, El-Darzi E, Aivasovsky I, Kaushik MP, Sack KD, Hartzell HC, Parikh SM, Flaumenhaft R, Schulman S | The Journal of clinical investigation | 36951953 | J Clin Invest | 2023 Jun 1 |
| The unfolded protein response links ER stress to cancer-associated thrombosis. | Muse O, Patell R, Peters CG, Yang M, El-Darzi E, Schulman S, Falanga A, Marchetti M, Russo L, Zwicker JI, Flaumenhaft R | JCI insight | 37651191 | JCI Insight | 2023 Aug 31 |
| Associations of thrombocytopenia, transaminase elevations, and transfusion with laboratory coagulation tests in women with preeclampsia: a cross-sectional study. | Combs DJ, Gray KJ, Schulman S, Bateman BT | International journal of obstetric anesthesia | 33798794 | Int J Obstet Anesth | 2021 May |
| How the tissue factor-VIIa complex keeps two substrates in the loop. | Schulman S | Journal of thrombosis and haemostasis : JTH | 33405385 | J Thromb Haemost | 2021 Jan |
| A guide to studying mitochondria transfer. | Tiash S, Brestoff JR, Crewe C | Nature cell biology | 37853133 | Nat Cell Biol | 2023 Nov |
| Dietary lipids inhibit mitochondria transfer to macrophages to divert adipocyte-derived mitochondria into the blood. | Borcherding N, Jia W, Giwa R, Field RL, Moley JR, Kopecky BJ, Chan MM, Yang BQ, Sabio JM, Walker EC, Osorio O, Bredemeyer AL, Pietka T, Alexander-Brett J, Morley SC, Artyomov MN, Abumrad NA, Schilling J, Lavine K, Crewe C, Brestoff JR | Cell metabolism | 36070756 | Cell Metab | 2022 Oct 4 |
| Multifaceted mitochondrial quality control in brown adipose tissue. | Aquilano K, Zhou B, Brestoff JR, Lettieri-Barbato D | Trends in cell biology | 36272883 | Trends Cell Biol | 2023 Jun |
| Hepatic lipids promote liver metastasis. | Li Y, Su X, Rohatgi N, Zhang Y, Brestoff JR, Shoghi KI, Xu Y, Semenkovich CF, Harris CA, Peterson LL, Weilbaecher KN, Teitelbaum SL, Zou W | JCI insight | 32879136 | JCI Insight | 2020 Sep 3 |
| Ablation of Fat Cells in Adult Mice Induces Massive Bone Gain. | Zou W, Rohatgi N, Brestoff JR, Li Y, Barve RA, Tycksen E, Kim Y, Silva MJ, Teitelbaum SL | Cell metabolism | 33027637 | Cell Metab | 2020 Nov 3 |
| Mitochondria Transfer to CD4(+) T Cells May Alleviate Rheumatoid Arthritis by Suppressing Pro-Inflammatory Cytokine Production. | Giwa R, Brestoff JR | Immunometabolism | 35444834 | Immunometabolism | 2022 |
| Coronavirus Disease 2019 Severity in Obese Patients May Be Linked to Viral Load and Immune Response. | Lewis AM, Zhang X, Brestoff JR | The Journal of infectious diseases | 34331761 | J Infect Dis | 2021 Nov 16 |
| Myeloid-specific Asxl2 deletion limits diet-induced obesity by regulating energy expenditure. | Zou W, Rohatgi N, Brestoff JR, Moley JR, Li Y, Williams JW, Alippe Y, Pan H, Pietka TA, Mbalaviele G, Newberry EP, Davidson NO, Dey A, Shoghi KI, Head RD, Wickline SA, Randolph GJ, Abumrad NA, Teitelbaum SL | The Journal of clinical investigation | 32310225 | J Clin Invest | 2020 May 1 |
| Blood natural killer cell deficiency reveals an immunotherapy strategy for atopic dermatitis. | Mack MR, Brestoff JR, Berrien-Elliott MM, Trier AM, Yang TB, McCullen M, Collins PL, Niu H, Bodet ND, Wagner JA, Park E, Xu AZ, Wang F, Chibnall R, Council ML, Heffington C, Kreisel F, Margolis DJ, Sheinbein D, Lovato P, Vivier E, Cella M, Colonna M, Yokoyama WM, Oltz EM, Fehniger TA, Kim BS | Science translational medicine | 32102931 | Sci Transl Med | 2020 Feb 26 |
| Intercellular Mitochondria Transfer to Macrophages Regulates White Adipose Tissue Homeostasis and Is Impaired in Obesity. | Brestoff JR, Wilen CB, Moley JR, Li Y, Zou W, Malvin NP, Rowen MN, Saunders BT, Ma H, Mack MR, Hykes BL Jr, Balce DR, Orvedahl A, Williams JW, Rohatgi N, Wang X, McAllaster MR, Handley SA, Kim BS, Doench JG, Zinselmeyer BH, Diamond MS, Virgin HW, Gelman AE, Teitelbaum SL | Cell metabolism | 33278339 | Cell Metab | 2021 Feb 2 |
| Full spectrum flow cytometry in the clinical laboratory. | Brestoff JR | International journal of laboratory hematology | 37211417 | Int J Lab Hematol | 2023 Jun |
| The power and potential of mitochondria transfer. | Borcherding N, Brestoff JR | Nature | 37938702 | Nature | 2023 Nov |
| Using information theory to optimize a diagnostic threshold to match physician-ordering practice. | Zaydman MA, Brestoff JR, Jackups R Jr | Journal of biomedical informatics | 33766781 | J Biomed Inform | 2021 May |
| Burning Fat to Fuel EVs. | Crewe C, Brestoff JR | Diabetes | 37862579 | Diabetes | 2023 Nov 1 |
| Technological features of blast identification in the cerebrospinal fluid: A systematic review of flow cytometry and laboratory haematology methods. | Frater JL, Shirai CL, Brestoff JR | International journal of laboratory hematology | 35785436 | Int J Lab Hematol | 2022 Sep |
| A type 2 immune circuit in the stomach controls mammalian adaptation to dietary chitin. | Kim DH, Wang Y, Jung H, Field RL, Zhang X, Liu TC, Ma C, Fraser JS, Brestoff JR, Van Dyken SJ | Science (New York, N.Y.) | 37676935 | Science | 2023 Sep 8 |
| Adipocyte lipin 1 expression associates with human metabolic health and regulates systemic metabolism in mice. | LaPoint A, Singer JM, Ferguson D, Shew TM, Renkemeyer MK, Palacios HH, Field RL, Yerrathota S, Kumari R, Shankaran M, Smith GI, Yoshino J, He M, Patti GJ, Hellerstein MK, Klein S, Brestoff JR, Morris EM, Finck BN, Lutkewitte AJ | The Journal of clinical investigation | 39405118 | J Clin Invest | 2024 Oct 15 |
| A systematic review and meta-analysis of obesity and COVID-19 outcomes. | Zhang X, Lewis AM, Moley JR, Brestoff JR | Scientific reports | 33785830 | Sci Rep | 2021 Mar 30 |
| Ejection of damaged mitochondria and their removal by macrophages ensure efficient thermogenesis in brown adipose tissue. | Rosina M, Ceci V, Turchi R, Chuan L, Borcherding N, Sciarretta F, Sánchez-Díaz M, Tortolici F, Karlinsey K, Chiurchiù V, Fuoco C, Giwa R, Field RL, Audano M, Arena S, Palma A, Riccio F, Shamsi F, Renzone G, Verri M, Crescenzi A, Rizza S, Faienza F, Filomeni G, Kooijman S, Rufini S, de Vries AAF, Scaloni A, Mitro N, Tseng YH, Hidalgo A, Zhou B, Brestoff JR, Aquilano K, Lettieri-Barbato D | Cell metabolism | 35305295 | Cell Metab | 2022 Apr 5 |
| Induction of a torpor-like hypothermic and hypometabolic state in rodents by ultrasound. | Yang Y, Yuan J, Field RL, Ye D, Hu Z, Xu K, Xu L, Gong Y, Yue Y, Kravitz AV, Bruchas MR, Cui J, Brestoff JR, Chen H | Nature metabolism | 37231250 | Nat Metab | 2023 May |
| Lipid-associated macrophages reshape BAT cell identity in obesity. | Sciarretta F, Ninni A, Zaccaria F, Chiurchiù V, Bertola A, Karlinsey K, Jia W, Ceci V, Di Biagio C, Xu Z, Gaudioso F, Tortolici F, Tiberi M, Zhang J, Carotti S, Boudina S, Grumati P, Zhou B, Brestoff JR, Ivanov S, Aquilano K, Lettieri-Barbato D | Cell reports | 38963761 | Cell Rep | 2024 Jul 23 |
| Timing matters in (mis)identifying moderators and mediators of digital interventions for eating disorders: Commentary on McClure et al. (2023). | Schleider JL, Smith AC, Graham AK | The International journal of eating disorders | 38450821 | Int J Eat Disord | 2024 May |
| Embracing Scientific Humility and Complexity: Learning "What Works for Whom" in Youth Psychotherapy Research. | Mullarkey MC, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 34096811 | J Clin Child Adolesc Psychol | 2021 Jul-Aug |
| A randomized trial of online single-session interventions for adolescent depression during COVID-19. | Schleider JL, Mullarkey MC, Fox KR, Dobias ML, Shroff A, Hart EA, Roulston CA | Nature human behaviour | 34887544 | Nat Hum Behav | 2022 Feb |
| Referring Adolescent Primary Care Patients to Single-Session Interventions for Anxiety and Depression: Protocol for a Feasibility Study. | Eyllon M, Dalal M, Jans L, Sotomayor I, Peloquin G, Yon J, Fritz R, Schleider J | JMIR research protocols | 37556202 | JMIR Res Protoc | 2023 Aug 9 |
| Web-Based Single Session Intervention for Perceived Control Over Anxiety During COVID-19: Randomized Controlled Trial. | Mullarkey M, Dobias M, Sung J, Ahuvia I, Shumake J, Beevers C, Schleider J | JMIR mental health | 35230962 | JMIR Ment Health | 2022 Apr 12 |
| Debate: Where to next for universal school-based mental health interventions? Tensions in prevention - To build better school-based programming, we must start with what we know. | Cohen KA, Bruns EJ, Schleider JL | Child and adolescent mental health | 40018868 | Child Adolesc Ment Health | 2025 Feb 28 |
| Technology Matters: Online, self-help single session interventions could expand current provision, improving early access to help for young people with depression symptoms, including minority groups. | Loades ME, Schleider JL | Child and adolescent mental health | 37415054 | Child Adolesc Ment Health | 2023 Nov |
| Single-Session Interventions Embedded Within Tumblr: Acceptability, Feasibility, and Utility Study. | Dobias ML, Morris RR, Schleider JL | JMIR formative research | 35877163 | JMIR Form Res | 2022 Jul 25 |
| Project Body Neutrality: Piloting a digital single-session intervention for adolescent body image and depression. | Smith AC, Ahuvia I, Ito S, Schleider JL | The International journal of eating disorders | 37129116 | Int J Eat Disord | 2023 Aug |
| Evaluating a treatment selection approach for online single-session interventions for adolescent depression. | Ahuvia IL, Mullarkey MC, Sung JY, Fox KR, Schleider JL | Journal of child psychology and psychiatry, and allied disciplines | 37183368 | J Child Psychol Psychiatry | 2023 Dec |
| Structural Correlates of Mental Health Support Access among Sexual Minority Youth of Color during COVID-19. | Roulston C, McKetta S, Price M, Fox KR, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 35259041 | J Clin Child Adolesc Psychol | 2023 Sep 3 |
| Linguistic distancing predicts response to a digital single-session intervention for adolescent depression. | Cohen KA, Shroff A, Nook EC, Schleider JL | Behaviour research and therapy | 36323056 | Behav Res Ther | 2022 Dec |
| Serving the Underserved? Uptake, Effectiveness, and Acceptability of Digital SSIs for Rural American Adolescents. | Szkody E, Chang YW, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37931065 | J Clin Child Adolesc Psychol | 2023 Nov 6 |
| A Digital Single-Session Intervention (Project Engage) to Address Fear of Negative Evaluation Among College Students: Pilot Randomized Controlled Trial. | Ghosh A, Cohen KA, Jans L, Busch CA, McDanal R, Yang Y, Cooper KM, Schleider JL | JMIR mental health | 37995114 | JMIR Ment Health | 2023 Nov 23 |
| Beliefs about depression relate to active and avoidant coping in high-symptom adolescents. | Pinder JB, Ahuvia IL, Chen S, Schleider JL | Journal of affective disorders | 37977300 | J Affect Disord | 2024 Feb 1 |
| Loneliness in Gender-Diverse and Sexual Orientation-Diverse Adolescents: Measurement Invariance Analyses and Between-Group Comparisons. | McDanal R, Schleider JL, Fox KR, Eaton NR | Assessment | 34963320 | Assessment | 2023 Apr |
| Retiring, Rethinking, and Reconstructing the Norm of Once-Weekly Psychotherapy. | Schleider JL, Dobias ML, Mullarkey MC, Ollendick T | Administration and policy in mental health | 32989621 | Adm Policy Ment Health | 2021 Jan |
| Developing, Deploying, and Evaluating Digital Mental Health Interventions in Spaces of Online Help- and Information-Seeking. | Kruzan KP, Fitzsimmons-Craft EE, Dobias M, Schleider JL, Pratap A | Procedia computer science | 37063642 | Procedia Comput Sci | 2022 |
| Not niche: eating disorders as an example in the dangers of overspecialisation. | Haynos AF, Egbert AH, Fitzsimmons-Craft EE, Levinson CA, Schleider JL | The British journal of psychiatry : the journal of mental science | 38097370 | Br J Psychiatry | 2024 Mar |
| Ecological-Systems Contributors to Internalizing Symptoms in a US Sample of Adolescents During the COVID-19 Pandemic. | Thorpe D, Mirhashem R, Shen J, Roulston C, Fox K, Schleider J | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37616119 | J Clin Child Adolesc Psychol | 2023 Aug 24 |
| Adolescents' beliefs about what symptoms constitute depression: Are more expansive definitions helpful or harmful? | Ahuvia IL, Fox KR, Schleider JL | SSM. Mental health | 38188868 | SSM Ment Health | 2023 Dec 15 |
| Sexual Health Education Experiences and Recommendations from the Perspective of LGBTQ+ Youth. | Hobaica S, Szkody E, Sotomayor I, Liao J, Schleider JL | Journal of sex research | 38880957 | J Sex Res | 2024 Jun 16 |
| Brief School-Based Interventions Targeting Student Mental Health or Well-Being: A Systematic Review and Meta-Analysis. | Cohen KA, Ito S, Ahuvia IL, Yang Y, Zhang Y, Renshaw TL, Larson M, Cook C, Hill S, Liao J, Rapoport A, Smock A, Yang M, Schleider JL | Clinical child and family psychology review | 38884838 | Clin Child Fam Psychol Rev | 2024 Sep |
| Accessibility and Utility of an Electronic Self-Guided Safety Plan for Adolescents. | Methi N, Weeks I, Hunt R, McGuire TC, Rubin A, Decker M, Schleider JL, Wang SB, Fox K | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 39312731 | J Clin Child Adolesc Psychol | 2024 Nov-Dec |
| Acceptability and Utility of an Open-Access, Online Single-Session Intervention Platform for Adolescent Mental Health. | Schleider JL, Dobias M, Sung J, Mumper E, Mullarkey MC | JMIR mental health | 32602846 | JMIR Ment Health | 2020 Jun 30 |
| Future Directions in Single-Session Youth Mental Health Interventions. | Schleider JL, Dobias ML, Sung JY, Mullarkey MC | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 31799863 | J Clin Child Adolesc Psychol | 2020 Mar-Apr |
| When is Psychotherapy Brief? Considering Sociodemographic Factors, Problem Complexity, and Problem Type in U.S. Adolescents. | Abel MR, Bianco A, Gilbert R, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 32356677 | J Clin Child Adolesc Psychol | 2022 Sep-Oct |
| Leveraging the Strengths of Psychologists With Lived Experience of Psychopathology. | Victor SE, Schleider JL, Ammerman BA, Bradford DE, Devendorf AR, Gruber J, Gunaydin LA, Hallion LS, Kaufman EA, Lewis SP, Stage DL | Perspectives on psychological science : a journal of the Association for Psychological Science | 35748769 | Perspect Psychol Sci | 2022 Nov |
| Empowering Anxious Parents to Manage Child Avoidance Behaviors: Randomized Control Trial of a Single-Session Intervention for Parental Accommodation. | Sung JY, Mumper E, Schleider JL | JMIR mental health | 34255718 | JMIR Ment Health | 2021 Jul 6 |
| The impact of COVID-19 on U.S. adolescents: loss of basic needs and engagement in health risk behaviors. | Shroff A, Fassler J, Fox KR, Schleider JL | Current psychology (New Brunswick, N.J.) | 35095242 | Curr Psychol | 2022 Jan 22 |
| Brief Interventions for Self-injurious Thoughts and Behaviors in Young People: A Systematic Review. | Dobias ML, Chen S, Fox KR, Schleider JL | Clinical child and family psychology review | 36715874 | Clin Child Fam Psychol Rev | 2023 Jun |
| The fundamental need for lived experience perspectives in developing and evaluating psychotherapies. | Schleider JL | Journal of consulting and clinical psychology | 36795434 | J Consult Clin Psychol | 2023 Mar |
| Realizing the untapped promise of single-session interventions for eating disorders. | Schleider JL, Smith AC, Ahuvia I | The International journal of eating disorders | 36815724 | Int J Eat Disord | 2023 May |
| Mixed-Methods Examination of Adolescent-Reported Barriers to Accessing Mental Health Services. | Mora Ringle VA, Sung JY, Roulston CA, Schleider JL | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 37804301 | J Adolesc Health | 2024 Feb |
| A randomized controlled trial comparing brief online self-guided interventions for loneliness. | Kaveladze BT, Gastelum SF, Ngo DC, Delacruz P, Cohen KA, Käll A, Andersson G, Schleider JL, Schueller SM | Journal of consulting and clinical psychology | 39325409 | J Consult Clin Psychol | 2025 Jan |
| Complex Systems Approaches to Diet: A Systematic Review. | Langellier BA, Bilal U, Montes F, Meisel JD, Cardoso LO, Hammond RA | American journal of preventive medicine | 31326011 | Am J Prev Med | 2019 Aug |
| Urban scaling of health outcomes: a protocol for a scoping review. | McCulley EM, Mullachery P, Rodriguez D, Diez Roux AV, Bilal U | BMJ open | 31767587 | BMJ Open | 2019 Nov 24 |
| Inequalities in life expectancy in six large Latin American cities from the SALURBAL study: an ecological analysis. | Bilal U, Alazraqui M, Caiaffa WT, Lopez-Olmedo N, Martinez-Folgar K, Miranda JJ, Rodriguez DA, Vives A, Diez-Roux AV | The Lancet. Planetary health | 31836433 | Lancet Planet Health | 2019 Dec |
| Economic Insecurity and Deaths of Despair in US Counties. | Knapp EA, Bilal U, Dean LT, Lazo M, Celentano DD | American journal of epidemiology | 31172197 | Am J Epidemiol | 2019 Dec 31 |
| Social inequities in cardiovascular risk factors in women and men by autonomous regions in Spain. | Gullón P, Díez J, Cainzos-Achirica M, Franco M, Bilal U | Gaceta sanitaria | 32674863 | Gac Sanit | 2021 Jul-Aug |
| Mortality amenable to healthcare in Latin American cities: a cross-sectional study examining between-country variation in amenable mortality and the role of urban metrics. | Mullachery PH, Rodriguez DA, Miranda JJ, López-Olmedo N, Martinez-Folgar K, Barreto ML, Diez Roux AV, Bilal U | International journal of epidemiology | 34339492 | Int J Epidemiol | 2022 Feb 18 |
| Invited Commentary: Some Social Epidemiologic Lessons From the COVID-19 Pandemic. | Schnake-Mahl AS, Bilal U | American journal of epidemiology | 36617304 | Am J Epidemiol | 2023 Jun 2 |
| Life expectancy and mortality in 363 cities of Latin America. | Bilal U, Hessel P, Perez-Ferrer C, Michael YL, Alfaro T, Tenorio-Mucha J, Friche AAL, Pina MF, Vives A, Quick H, Alazraqui M, Rodriguez DA, Miranda JJ, Diez-Roux AV, SALURBAL group | Nature medicine | 33495602 | Nat Med | 2021 Mar |
| Linking historical discriminatory housing patterns to the contemporary food environment in Baltimore. | Sadler RC, Bilal U, Furr-Holden CD | Spatial and spatio-temporal epidemiology | 33509435 | Spat Spatiotemporal Epidemiol | 2021 Feb |
| Urban scaling of opioid analgesic sales in the United States. | Mullachery PH, Bilal U | PloS one | 34637453 | PLoS One | 2021 |
| Heterogeneity in Disparities in Life Expectancy Across US Metropolitan Areas. | Schnake-Mahl AS, Mullachery PH, Purtle J, Li R, Diez Roux AV, Bilal U | Epidemiology (Cambridge, Mass.) | 36220582 | Epidemiology | 2022 Nov 1 |
| Urban scaling of opioid overdose deaths in the USA: a cross-sectional study in three periods between 2005 and 2017. | Mullachery PH, Lankenau S, Diez Roux AV, Li R, Henson RM, Bilal U | BMJ open | 35241464 | BMJ Open | 2022 Mar 3 |
| Does a physical activity supportive environment ameliorate or exacerbate socioeconomic inequities in incident coronary heart disease? | Gullon P, Bilal U, Hirsch JA, Rundle AG, Judd S, Safford MM, Lovasi GS | Journal of epidemiology and community health | 33318134 | J Epidemiol Community Health | 2021 Jul |
| Understanding Immigration as a Social Determinant of Health: Cardiovascular Disease in Hispanics/Latinos and South Asians in the United States. | Guadamuz JS, Kapoor K, Lazo M, Eleazar A, Yahya T, Kanaya AM, Cainzos-Achirica M, Bilal U | Current atherosclerosis reports | 33772650 | Curr Atheroscler Rep | 2021 Mar 27 |
| Racial/Ethnic Disparities in Hepatocellular Carcinoma: The Role of Neighborhood Socioeconomic Deprivation. | Lazo M, Martinez-Folgar K, Bilal U | Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology | 35775232 | Cancer Epidemiol Biomarkers Prev | 2022 Jul 1 |
| Urban social determinants of non-communicable diseases risk factors in Argentina. | Tumas N, Rodríguez López S, Bilal U, Ortigoza AF, Diez Roux AV | Health & place | 34210611 | Health Place | 2022 Sep |
| Heterogeneity in Spatial Inequities in COVID-19 Vaccination Across 16 Large US Cities. | Bilal U, Mullachery PH, Schnake-Mahl A, Rollins H, McCulley E, Kolker J, Barber S, Diez Roux AV | American journal of epidemiology | 35452081 | Am J Epidemiol | 2022 Aug 22 |
| Geospatial Data Aggregation Methods for Novel Geographies: Validating Congressional District Life Expectancy Estimates. | Schnake-Mahl A, Anfuso G, Hernandez SM, Bilal U | Epidemiology (Cambridge, Mass.) | 39329432 | Epidemiology | 2025 Jan 1 |
| Does geographic availability of alcohol influence drinking in adolescents? A systematic review of literature associations. | Martín-Turrero I, Valiente R, Pastor A, Bilal U, Sureda X | Health & place | 39368139 | Health Place | 2024 Nov |
| Access to and availability of exercise facilities in Madrid: an equity perspective. | Cereijo L, Gullón P, Cebrecos A, Bilal U, Santacruz JA, Badland H, Franco M | International journal of health geographics | 31266518 | Int J Health Geogr | 2019 Jul 2 |
| Socioeconomic Inequalities in the Retail Food Environment around Schools in a Southern European Context. | Díez J, Cebrecos A, Rapela A, Borrell LN, Bilal U, Franco M | Nutrients | 31277242 | Nutrients | 2019 Jul 3 |
| Scaling of mortality in 742 metropolitan areas of the Americas. | Bilal U, de Castro CP, Alfaro T, Barrientos-Gutierrez T, Barreto ML, Leveau CM, Martinez-Folgar K, Miranda JJ, Montes F, Mullachery P, Pina MF, Rodriguez DA, Dos Santos GF, Andrade RFS, Diez Roux AV | Science advances | 34878846 | Sci Adv | 2021 Dec 10 |
| Potential impacts of policies to reduce purchasing of ultra-processed foods in Mexico at different stages of the social transition: an agent-based modelling approach. | Langellier BA, Stankov I, Hammond RA, Bilal U, Auchincloss AH, Barrientos-Gutierrez T, Cardoso LO, Diez Roux AV | Public health nutrition | 34895382 | Public Health Nutr | 2022 Jun |
| Excess Mortality During the COVID-19 Pandemic in Guatemala. | Martinez-Folgar K, Alburez-Gutierrez D, Paniagua-Avila A, Ramirez-Zea M, Bilal U | American journal of public health | 34554821 | Am J Public Health | 2021 Oct |
| Burden of cardiovascular risk factors and disease in five Asian groups in Catalonia: a disaggregated, population-based analysis of 121 000 first-generation Asian immigrants. | Satish P, Vela E, Bilal U, Cleries M, Kanaya AM, Kandula N, Virani SS, Islam N, Valero-Elizondo J, Yahya T, Comin-Colet J, Nasir K, Mauri J, Cainzos-Achirica M | European journal of preventive cardiology | 33969397 | Eur J Prev Cardiol | 2022 May 6 |
| Changes in Racial/Ethnic Disparities in Opioid-Related Outcomes in Urban Areas during the COVID-19 Pandemic: A Rapid Review of the Literature. | Moran KM, Mullachery PH, Lankenau S, Bilal U | International journal of environmental research and public health | 35954640 | Int J Environ Res Public Health | 2022 Jul 29 |
| Does Urban Greenspace Reduce Mortality Inequalities Based on Poverty, Race, or Both in Philadelphia, PA? | Schinasi LH, Kondo MC, Edwards J, Clougherty JE, De Roos AJ, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 37563520 | J Urban Health | 2023 Aug |
| Excess Mortality during the COVID-19 Pandemic in Cities of Chile: Magnitude, Inequalities, and Urban Determinants. | Alfaro T, Martinez-Folgar K, Vives A, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 35688966 | J Urban Health | 2022 Oct |
| Mapping the visibility of smokers across a large capital city. | Valiente R, Escobar F, Pearce J, Bilal U, Franco M, Sureda X | Environmental research | 31706598 | Environ Res | 2020 Jan |
| [Epidemiologic evidence on the role of hospitality venues in the transmission of COVID-19: A rapid review of the literature]. | Bilal U, Gullón P, Padilla-Bernáldez J | Gaceta sanitaria | 33933322 | Gac Sanit | 2022 Mar-Apr |
| Disaggregating disparities: A case study of heterogenous COVID-19 disparities across waves, geographies, social vulnerability, and political lean in Louisiana. | Schnake-Mahl A, Bilal U | Preventive medicine reports | 35637894 | Prev Med Rep | 2022 Aug |
| Exploring inequalities in life expectancy and lifespan variation by race/ethnicity and urbanicity in the United States: 1990 to 2019. | De Ramos IP, Auchincloss AH, Bilal U | SSM - population health | 36148325 | SSM Popul Health | 2022 Sep |
| Exercise facility availability and incidence of type 2 diabetes and complications in Spain: A population-based retrospective cohort 2015-2018. | Cereijo L, Gullón P, Del Cura I, Valadés D, Bilal U, Franco M, Badland H | Health & place | 37087897 | Health Place | 2023 May |
| Evaluation of the national sobriety checkpoints program in Mexico: a difference-in-difference approach with variation in timing of program adoption. | Mullachery PH, Quistberg DA, Lazo M, Indvik K, Perez-Ferrer C, López-Olmedo N, Colchero MA, Bilal U | Injury epidemiology | 36411475 | Inj Epidemiol | 2022 Nov 21 |
| The urban built environment and adult BMI, obesity, and diabetes in Latin American cities. | Anza-Ramirez C, Lazo M, Zafra-Tanaka JH, Avila-Palencia I, Bilal U, Hernández-Vásquez A, Knoll C, Lopez-Olmedo N, Mazariegos M, Moore K, Rodriguez DA, Sarmiento OL, Stern D, Tumas N, Miranda JJ | Nature communications | 36581636 | Nat Commun | 2022 Dec 29 |
| Considering multiple governance levels in epidemiologic analysis of public policies. | Schnake-Mahl AS, Jahn JL, Purtle J, Bilal U | Social science & medicine (1982) | 36274459 | Soc Sci Med | 2022 Dec |
| Inequalities by Income in the Prevalence of Cardiovascular Disease and Its Risk Factors in the Adult Population of Catalonia. | Mullachery PH, Vela E, Cleries M, Comin-Colet J, Nasir K, Diez Roux AV, Cainzos-Achirica M, Mauri J, Bilal U | Journal of the American Heart Association | 36000437 | J Am Heart Assoc | 2022 Sep 6 |
| Socioeconomic Disparities in Hypertension by Levels of Green Space Availability: A Cross-Sectional Study in Philadelphia, PA. | Koh C, Kondo MC, Rollins H, Bilal U | International journal of environmental research and public health | 35206224 | Int J Environ Res Public Health | 2022 Feb 11 |
| Urban Scaling of Health Outcomes: a Scoping Review. | McCulley EM, Mullachery PH, Ortigoza AF, Rodríguez DA, Diez Roux AV, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 35513600 | J Urban Health | 2022 Jun |
| Health and Environmental Co-Benefits of City Urban Form in Latin America: An Ecological Study. | Avila-Palencia I, Sánchez BN, Rodríguez DA, Perez-Ferrer C, Miranda JJ, Gouveia N, Bilal U, Useche AF, Wilches-Mogollon MA, Moore K, Sarmiento OL, Diez Roux AV | Sustainability | 36926000 | Sustainability | 2022 Nov 8 |
| Association Between Household Deprivation and Living in Informal Settlements and Incidence of Diarrhea in Children Under 5 in Eleven Latin American Cities. | Alpaugh V, Ortigoza A, Braverman Bronstein A, Pérez-Ferrer C, Wagner-Gutierrez N, Pacifico N, Ezeh A, Caiaffa WT, Lovasi G, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 38652338 | J Urban Health | 2024 Jun |
| Spatial Heterogeneity in Fatal Overdose Rate Trends in Mexican Cities: 2005-2021. | Henson RM, Mullachery PH, Sánchez-Pájaro A, Cruz-Cruz C, Bilal U, Langellier B, Barrientos-Gutiérrez T | American journal of public health | 38723222 | Am J Public Health | 2024 Jul |
| Social disparities in flood exposure and associations with the urban environment in 44,698 neighborhoods in 276 cities in eight Latin American countries. | Kephart JL, Bilal U, Gouveia N, Sarmiento OL, Shingara E, Moreno KR, Bakhtsiyarava M, Rodriguez JP, Ayala S, Carrasco-Escobar G, Diez Roux AV, SALURBAL-Climate Project | medRxiv : the preprint server for health sciences | 39006415 | medRxiv | 2024 Jul 3 |
| How Can We Measure Alcohol Outlet Density Around Schools? A Comparison Between Two Buffer-Based Methods. | Martín-Turrero I, Sureda X, Escobar F, Bilal U, Berasaluce M, Valiente R | Journal of urban health : bulletin of the New York Academy of Medicine | 37351726 | J Urban Health | 2023 Jun |
| Ambient nitrogen dioxide in 47 187 neighbourhoods across 326 cities in eight Latin American countries: population exposures and associations with urban features. | Kephart JL, Gouveia N, Rodríguez DA, Indvik K, Alfaro T, Texcalac-Sangrador JL, Miranda JJ, Bilal U, Diez Roux AV | The Lancet. Planetary health | 38056968 | Lancet Planet Health | 2023 Dec |
| Variability and social patterning of cancer mortality in 343 Latin American cities: an ecological study. | Alfaro T, Martinez-Folgar K, Stern D, Wilches-Mogollon MA, Muñoz MP, Quick H, Alazraqui M, Ramirez-Zea M, Miranda JJ, Lazo M, Caiaffa WT, Roux AVD, Bilal U | The Lancet. Global health | 39890227 | Lancet Glob Health | 2025 Feb |
| Urban landscape and street-design factors associated with road-traffic mortality in Latin America between 2010 and 2016 (SALURBAL): an ecological study. | Quistberg DA, Hessel P, Rodriguez DA, Sarmiento OL, Bilal U, Caiaffa WT, Miranda JJ, de Pina MF, Hernández-Vásquez A, Diez Roux AV | The Lancet. Planetary health | 35150622 | Lancet Planet Health | 2022 Feb |
| Inequities in spatial accessibility to COVID-19 testing in 30 large US cities. | Mullachery PH, Li R, Melly S, Kolker J, Barber S, Diez Roux AV, Bilal U | Social science & medicine (1982) | 36049353 | Soc Sci Med | 2022 Oct |
| COVID-19 Outcomes Among the Hispanic Population of 27 Large US Cities, 2020-2021. | De Ramos IP, Lazo M, Schnake-Mahl A, Li R, Martinez-Donate AP, Roux AVD, Bilal U | American journal of public health | 35588187 | Am J Public Health | 2022 Jul |
| Higher COVID-19 Vaccination And Narrower Disparities In US Cities With Paid Sick Leave Compared To Those Without. | Schnake-Mahl AS, O'Leary G, Mullachery PH, Skinner A, Kolker J, Diez Roux AV, Raifman JR, Bilal U | Health affairs (Project Hope) | 36343316 | Health Aff (Millwood) | 2022 Nov |
| Validation of a neighborhood-level COVID Local Risk Index in 47 large U.S. cities. | Spoer BR, McCulley E, Lampe TM, Hsieh PY, Chen A, Ofrane R, Rollins H, Thorpe LE, Bilal U, Gourevitch MN | Health & place | 35623163 | Health Place | 2022 Jul |
| Socioeconomic deprivation and changes in the retail food environment of Mexico from 2010 to 2020. | Ramírez-Toscano Y, Pérez-Ferrer C, Bilal U, Auchincloss AH, Barrientos-Gutierrez T | Health & place | 35932595 | Health Place | 2022 Sep |
| Gender inequality, women's empowerment, and adolescent birth rates in 363 Latin American cities. | Braverman-Bronstein A, Ortigoza AF, Vidaña-Pérez D, Barrientos-Gutiérrez T, Baldovino-Chiquillo L, Bilal U, Friche AAL, Diez-Canseco F, Maslowsky J, Vives V A, Diez Roux AV | Social science & medicine (1982) | 36446141 | Soc Sci Med | 2023 Jan |
| What Has It Meant for Me to Be an Epidemiologist in 2020? | Bilal U | Epidemiology (Cambridge, Mass.) | 33122555 | Epidemiology | 2021 Jan |
| Adaptation and Evaluation of the Nutrition Environment Measures Survey in Stores to Assess Mediterranean Food Environments (NEMS-S-MED). | Martínez-García A, Díez J, Fernández-Escobar C, Trescastro-López EM, Pereyra-Zamora P, Ariza C, Bilal U, Franco M | International journal of environmental research and public health | 32992984 | Int J Environ Res Public Health | 2020 Sep 25 |
| A COMPARATIVE CASE STUDY OF WALKING ENVIRONMENT IN MADRID AND PHILADELPHIA USING MULTIPLE SAMPLING METHODS AND STREET VIRTUAL AUDITS. | Gullón P, Bilal U, Sánchez P, Díez J, Lovasi GS, Franco M | Cities & health | 33718600 | Cities Health | 2020 |
| Spatial Inequities in COVID-19 Testing, Positivity, Confirmed Cases, and Mortality in 3 U.S. Cities : An Ecological Study. | Bilal U, Tabb LP, Barber S, Diez Roux AV | Annals of internal medicine | 33780289 | Ann Intern Med | 2021 Jul |
| Area-Level Social Vulnerability and Severe COVID-19: A Case-Control Study Using Electronic Health Records from Multiple Health Systems in the Southeastern Pennsylvania Region. | Mullachery PH, Bilal U, Li R, McClure LA | Journal of urban health : bulletin of the New York Academy of Medicine | 38740710 | J Urban Health | 2024 Aug |
| Understanding the obesity dynamics by socioeconomic status in Colombian and Mexican cities using a system dynamics model. | Meisel JD, Esguerra V, Pérez Ferrer C, Stankov I, Montes F, Tumas N, Bilal U, Valdivia JA, Diez Roux AV, Sarmiento OL | Heliyon | 39605831 | Heliyon | 2024 Nov 30 |
| Court-mandated redistricting and disparities in infant mortality and deaths of despair. | Schnake-Mahl A, Anfuso G, Bilal U, Goldstein ND, Purtle J, Hernandez SM, Eberth JM | BMC public health | 40108583 | BMC Public Health | 2025 Mar 19 |
| Polypill for Population-Level Primary Cardiovascular Prevention in Underserved Populations-A Social Epidemiology Counterargument. | Cainzos-Achirica M, Bilal U | The American journal of medicine | 32442515 | Am J Med | 2020 Oct |
| Social inequalities in mobility during and following the COVID-19 associated lockdown of the Madrid metropolitan area in Spain. | Glodeanu A, Gullón P, Bilal U | Health & place | 34022543 | Health Place | 2021 Jul |
| COVID-19, Ambient Air Pollution, and Environmental Health Inequities in Latin American Cities. | Kephart JL, Avila-Palencia I, Bilal U, Gouveia N, Caiaffa WT, Diez Roux AV | Journal of urban health : bulletin of the New York Academy of Medicine | 33471282 | J Urban Health | 2021 Jun |
| Social cross-over in cardiovascular disease: context matters. | Mullachery PH, Bilal U | Heart (British Cardiac Society) | 33568428 | Heart | 2021 May |
| COVID-19 and the worsening of health inequities in Santiago, Chile. | Bilal U, Alfaro T, Vives A | International journal of epidemiology | 33537771 | Int J Epidemiol | 2021 Jul 9 |
| Schnake-Mahl and Bilal Respond to "Structural Racism and COVID-19 Mortality in the US". | Schnake-Mahl AS, Bilal U | American journal of epidemiology | 33710318 | Am J Epidemiol | 2021 Aug 1 |
| Variation in Non-external and External Causes of Death in Peru in Relation to the COVID-19 Lockdown. | Calderon-Anyosa RJC, Bilal U, Kaufman JS | The Yale journal of biology and medicine | 33795980 | Yale J Biol Med | 2021 Mar |
| Assessing the Retail Food Environment in Madrid: An Evaluation of Administrative Data against Ground Truthing. | Díez J, Cebrecos A, Galán I, Pérez-Freixo H, Franco M, Bilal U | International journal of environmental research and public health | 31546670 | Int J Environ Res Public Health | 2019 Sep 21 |
| Impact of the COVID-19 pandemic on life expectancy in Madrid (Spain). | Trias-Llimós S, Bilal U | Journal of public health (Oxford, England) | 32542350 | J Public Health (Oxf) | 2020 Aug 18 |
| Longitudinal changes in the retail food environment in Mexico and their association with diabetes. | Pérez-Ferrer C, Auchincloss AH, Barrientos-Gutierrez T, Colchero MA, de Oliveira Cardoso L, Carvalho de Menezes M, Bilal U | Health & place | 33039800 | Health Place | 2020 Nov |
| Estimating and mapping cigarette butt littering in urban environments: A GIS approach. | Valiente R, Escobar F, Pearce J, Bilal U, Franco M, Sureda X | Environmental research | 32004828 | Environ Res | 2020 Apr |
| Monitoring life expectancy levels during the COVID-19 pandemic: Example of the unequal impact of the first wave on Spanish regions. | Trias-Llimós S, Riffe T, Bilal U | PloS one | 33152009 | PLoS One | 2020 |
| Health and Health-Related Resources in Newly Designated Federally Qualified Opportunity Zones: United States, 2012-2016. | Hirsch JA, Zhao Y, Bilal U, Neckerman KM, Michael YL | American journal of public health | 31944851 | Am J Public Health | 2020 Mar |
| Polypill for Cardiovascular Disease Prevention in an Underserved Population. | Bilal U, Cainzos-Achirica M | The New England journal of medicine | 31875510 | N Engl J Med | 2020 Jan 2 |
| Reduction in socioeconomic inequalities in self-reported mental health conditions with increasing greenspace exposure. | Kondo MC, McIntire RK, Bilal U, Schinasi LH | Health & place | 36193582 | Health Place | 2022 Nov |
| Measuring variation in infant mortality and deaths of despair by US congressional district in Pennsylvania: a methodological case study. | Schnake-Mahl A, Anfuso G, Goldstein ND, Purtle J, Eberth JM, Ortigoza A, Bilal U | American journal of epidemiology | 38412272 | Am J Epidemiol | 2024 Jul 8 |
| A scaling investigation of urban form features in Latin America cities. | Paiva ASS, Santos GF, Castro CP, Rodriguez DA, Bilal U, Sousa Filho JF, Freitas A, Montes F, Dronova I, Barreto ML, Andrade RFS | PloS one | 38109440 | PLoS One | 2023 |
| Racial/ethnic and neighbourhood social vulnerability disparities in COVID-19 testing positivity, hospitalization, and in-hospital mortality in a large hospital system in Pennsylvania: A prospective study of electronic health records. | Bilal U, Jemmott JB, Schnake-Mahl A, Murphy K, Momplaisir F | Lancet regional health. Americas | 35262038 | Lancet Reg Health Am | 2022 Jun |
| Tracking COVID-19 Inequities Across Jurisdictions Represented in the Big Cities Health Coalition (BCHC): The COVID-19 Health Inequities in BCHC Cities Dashboard. | Bilal U, McCulley E, Li R, Rollins H, Schnake-Mahl A, Mullachery PH, Vaidya V, Koh C, Dureja K, Sharaf A, Furukawa A, Juliano C, Barber S, Kolker J, Diez Roux AV | American journal of public health | 35420892 | Am J Public Health | 2022 Jun |
| How education and racial segregation intersect in neighborhoods with persistently low COVID-19 vaccination rates in Philadelphia. | Rich JA, Miech EJ, Bilal U, Corbin TJ | BMC public health | 35614426 | BMC Public Health | 2022 May 25 |
| The effect of population mobility on COVID-19 incidence in 314 Latin American cities: a longitudinal ecological study with mobile phone location data. | Kephart JL, Delclòs-Alió X, Rodríguez DA, Sarmiento OL, Barrientos-Gutiérrez T, Ramirez-Zea M, Quistberg DA, Bilal U, Diez Roux AV | The Lancet. Digital health | 34456179 | Lancet Digit Health | 2021 Nov |
| Built environment profiles for Latin American urban settings: The SALURBAL study. | Sarmiento OL, Useche AF, Rodriguez DA, Dronova I, Guaje O, Montes F, Stankov I, Wilches MA, Bilal U, Wang X, Guzmán LA, Peña F, Quistberg DA, Guerra-Gomez JA, Diez Roux AV | PloS one | 34699532 | PLoS One | 2021 |
| Indoor Dining and In-Person Learning: A Comparison of 30 US Cities. | O'Leary G, Schnake-Mahl AS, Vaidya V, Bilal U, Kolker J | International journal of environmental research and public health | 34682712 | Int J Environ Res Public Health | 2021 Oct 19 |
| Accessibility and availability of alcohol outlets around schools: An ecological study in the city of Madrid, Spain, according to socioeconomic area-level. | Martín-Turrero I, Valiente R, Molina-de la Fuente I, Bilal U, Lazo M, Sureda X | Environmental research | 34774513 | Environ Res | 2022 Mar |
| The Impact of Keeping Indoor Dining Closed on COVID-19 Rates Among Large US Cities: A Quasi-Experimental Design. | Schnake-Mahl AS, O'Leary G, Mullachery PH, Vaidya V, Connor G, Rollins H, Kolker J, Diez Roux AV, Bilal U | Epidemiology (Cambridge, Mass.) | 34799474 | Epidemiology | 2022 Mar 1 |
| Variation in youth and young adult homicide rates and their association with city characteristics in Latin America: the SALURBAL study. | de Lima Friche AA, Silva UM, Bilal U, Sarmiento OL, de Salles Dias MA, Prado-Galbarro FJ, Briceño-León R, Alazraqui M, Diez-Roux AV, Caiaffa WT | Lancet regional health. Americas | 36970493 | Lancet Reg Health Am | 2023 Apr |
| Spatial Inequities in Life Expectancy in Small Areas of Buenos Aires, Argentina 2015-2017. | Trotta A, Bilal U, Acharya B, Quick H, Moore K, Perner SM, Alazraqui M, Diez Roux A | Journal of urban health : bulletin of the New York Academy of Medicine | 37225944 | J Urban Health | 2023 Jun |
| Ambient nitrogen dioxide in 47,187 neighborhoods across 326 cities in eight Latin American countries: population exposures and associations with urban features. | Kephart JL, Gouveia N, Rodriguez DA, Indvik K, Alfaro T, Texcalac JL, Miranda JJ, Bilal U, Roux AVD | medRxiv : the preprint server for health sciences | 37205591 | medRxiv | 2023 May 2 |
| Impact of an enhanced sobriety checkpoints programme and publicity campaign on motor vehicle collisions, injuries and deaths in Leon, MX: a synthetic control study. | Quistberg DA, Perez-Ferrer C, Bilal U, Rodriguez Hernandez JL, Ramírez-Toscano Y, Cardenas Cardenas LM, Junquera-Badilla I, Yamada G, Barrientos-Gutierrez T, Diez Roux AV | Injury prevention : journal of the International Society for Child and Adolescent Injury Prevention | 39038940 | Inj Prev | 2024 Jul 22 |
| Wide range of phenotypic severity in individuals with late truncations unique to the predominant CDKL5 transcript in the brain. | Keehan L, Haviland I, Gofin Y, Swanson LC, El Achkar CM, Schreiber J, VanNoy GE, O'Heir E, O'Donnell-Luria A, Lewis RA, Magoulas P, Tran A, Azamian MS, Chao HT, Pham L, Samaco RC, Elsea S, Thorpe E, Kesari A, Perry D, Lee B, Lalani SR, Rosenfeld JA, Olson HE, Burrage LC, Undiagnosed Diseases Network | American journal of medical genetics. Part A | 35934918 | Am J Med Genet A | 2022 Dec |
| An Integrated Phenotypic and Genotypic Approach Reveals a High-Risk Subtype Association for EBF3 Missense Variants Affecting the Zinc Finger Domain. | Deisseroth CA, Lerma VC, Magyar CL, Pfliger JM, Nayak A, Bliss ND, LeMaire AW, Narayanan V, Balak C, Zanni G, Valente EM, Bertini E, Benke PJ, Wangler MF, Chao HT | Annals of neurology | 35340043 | Ann Neurol | 2022 Jul |
| De novo EIF2AK1 and EIF2AK2 Variants Are Associated with Developmental Delay, Leukoencephalopathy, and Neurologic Decompensation. | Mao D, Reuter CM, Ruzhnikov MRZ, Beck AE, Farrow EG, Emrick LT, Rosenfeld JA, Mackenzie KM, Robak L, Wheeler MT, Burrage LC, Jain M, Liu P, Calame D, Küry S, Sillesen M, Schmitz-Abe K, Tonduti D, Spaccini L, Iascone M, Genetti CA, Koenig MK, Graf M, Tran A, Alejandro M, Undiagnosed Diseases Network, Lee BH, Thiffault I, Agrawal PB, Bernstein JA, Bellen HJ, Chao HT | American journal of human genetics | 32197074 | Am J Hum Genet | 2020 Apr 2 |
| PRUNE1 c.933G>A synonymous variant induces exon 7 skipping, disrupts the DHHA2 domain, and leads to an atypical NMIHBA syndrome presentation: Case report and review of the literature. | Magyar CL, Murdock DR, Burrage LC, Dai H, Lalani SR, Lewis RA, Lin Y, Astudillo MF, Rosenfeld JA, Tran AA, Gibson JB, Undiagnosed Diseases Network, Bacino CA, Lee BH, Chao HT | American journal of medical genetics. Part A | 35194938 | Am J Med Genet A | 2022 Jun |
| Memory-like Differentiation, Tumor-Targeting mAbs, and Chimeric Antigen Receptors Enhance Natural Killer Cell Responses to Head and Neck Cancer. | Jacobs MT, Wong P, Zhou AY, Becker-Hapak M, Marin ND, Marsala L, Foster M, Foltz JA, Cubitt CC, Tran J, Russler-Germain DA, Neal C, Kersting-Schadek S, Chang L, Schappe T, Pence P, McClain E, Zevallos JP, Rich JT, Paniello RC, Jackson RS, Pipkorn P, Adkins DR, DeSelm CJ, Berrien-Elliott MM, Puram SV, Fehniger TA | Clinical cancer research : an official journal of the American Association for Cancer Research | 37556118 | Clin Cancer Res | 2023 Oct 13 |
| Dendritic Cell Paucity Leads to Dysfunctional Immune Surveillance in Pancreatic Cancer. | Hegde S, Krisnawan VE, Herzog BH, Zuo C, Breden MA, Knolhoff BL, Hogg GD, Tang JP, Baer JM, Mpoy C, Lee KB, Alexander KA, Rogers BE, Murphy KM, Hawkins WG, Fields RC, DeSelm CJ, Schwarz JK, DeNardo DG | Cancer cell | 32183949 | Cancer Cell | 2020 Mar 16 |
| CARD8 is an inflammasome sensor for HIV-1 protease activity. | Wang Q, Gao H, Clark KM, Mugisha CS, Davis K, Tang JP, Harlan GH, DeSelm CJ, Presti RM, Kutluay SB, Shan L | Science (New York, N.Y.) | 33542150 | Science | 2021 Mar 19 |
| Chimeric Antigen Receptor Macrophages Target and Resorb Amyloid Plaques in a Mouse Model of Alzheimer's Disease. | Pan Q, Yan P, Kim AB, Xiao Q, Pandey G, Haecker H, Epelman S, Diwan A, Lee JM, DeSelm CJ | bioRxiv : the preprint server for biology | 37162824 | bioRxiv | 2023 May 3 |
| BAP1 promotes osteoclast function by metabolic reprogramming. | Rohatgi N, Zou W, Li Y, Cho K, Collins PL, Tycksen E, Pandey G, DeSelm CJ, Patti GJ, Dey A, Teitelbaum SL | Nature communications | 37740028 | Nat Commun | 2023 Sep 22 |
| Chimeric antigen receptor macrophages target and resorb amyloid plaques. | Kim AB, Xiao Q, Yan P, Pan Q, Pandey G, Grathwohl S, Gonzales E, Xu I, Cho Y, Haecker H, Epelman S, Diwan A, Lee JM, DeSelm CJ | JCI insight | 38516884 | JCI Insight | 2024 Feb 6 |
| Intrinsic tumor resistance to CAR T cells is a dynamic transcriptional state that is exploitable with low-dose radiation. | Kim AB, Chou SY, Kang S, Kwon E, Inkman M, Szymanski J, Andruska N, Colgan C, Zhang J, Yang JC, Singh N, DeSelm CJ | Blood advances | 37093643 | Blood Adv | 2023 Sep 26 |
| Understanding the Scope of Do-It-Yourself Fecal Microbiota Transplant. | Ekekezie C, Perler BK, Wexler A, Duff C, Lillis CJ, Kelly CR | The American journal of gastroenterology | 31972620 | Am J Gastroenterol | 2020 Apr |
| Separating neuroethics from neurohype. | Wexler A | Nature biotechnology | 31399721 | Nat Biotechnol | 2019 Sep |
| Oversight of direct-to-consumer neurotechnologies. | Wexler A, Reiner PB | Science (New York, N.Y.) | 30655433 | Science | 2019 Jan 18 |
| Direct-to-consumer orthodontics: surveying the user experience. | Wexler A, Nagappan A, Beswerchij A, Choi R | Journal of the American Dental Association (1939) | 32718492 | J Am Dent Assoc | 2020 Aug |
| Translational Neuroethics: A Vision for a More Integrated, Inclusive, and Impactful Field. | Wexler A, Specker Sullivan L | AJOB neuroscience | 34851808 | AJOB Neurosci | 2023 Oct-Dec |
| Pregnant at the start of the pandemic: a content analysis of COVID-19-related posts on online pregnancy discussion boards. | Choi R, Nagappan A, Kopyto D, Wexler A | BMC pregnancy and childbirth | 35710387 | BMC Pregnancy Childbirth | 2022 Jun 16 |
| Innovative Practice Outside of Medical Institutions. | Wexler A | The American journal of bioethics : AJOB | 31135304 | Am J Bioeth | 2019 Jun |
| The Urgent Need to Better Integrate Neuroscience and Neuroethics. | Wexler A | AJOB neuroscience | 34029492 | AJOB Neurosci | 2020 Jul-Sep |
| Author's response. | Wexler A | Journal of the American Dental Association (1939) | 33413846 | J Am Dent Assoc | 2021 Jan |
| The promise of direct-to-consumer COVID-19 testing: ethical and regulatory issues. | Kalokairinou L, Zettler PJ, Nagappan A, Kyweluk MA, Wexler A | Journal of law and the biosciences | 33569177 | J Law Biosci | 2020 Jan-Jun |
| Ethical considerations for researchers developing and testing minimal-risk devices. | Wexler A, Largent E | Nature communications | 37087446 | Nat Commun | 2023 Apr 22 |
| Opportunity Cost or Opportunity Lost: An Empirical Assessment of Ethical Concerns and Attitudes of EEG Neurofeedback Users. | Kalokairinou L, Choi R, Nagappan A, Wexler A | Neuroethics | 36249541 | Neuroethics | 2022 Oct |
| Direct-to-Consumer Neurotechnology: A Grounded Appraisal. | Wexler A | AJOB neuroscience | 31642764 | AJOB Neurosci | 2019 Oct-Dec |
| Pregnancy and health in the age of the Internet: A content analysis of online "birth club" forums. | Wexler A, Davoudi A, Weissenbacher D, Choi R, O'Connor K, Cummings H, Gonzalez-Hernandez G | PloS one | 32287266 | PLoS One | 2020 |
| Neuroenhancement for sale: assessing the website claims of neurofeedback providers in the United States. | Wexler A, Nagappan A, Kopyto D, Choi R | Journal of cognitive enhancement : towards the integration of theory and practice | 34164596 | J Cogn Enhanc | 2020 Dec |
| Brain Wellness "Spas"-Anticipating the Off-label Promotion of Psychedelics. | Wexler A, Sisti D | JAMA psychiatry | 35767292 | JAMA Psychiatry | 2022 Aug 1 |
| Realizing Present and Future Promise of DIY Biology and Medicine through a Trust Architecture. | Rasmussen LM, Guerrini CJ, Kuiken T, Nebeker C, Pearlman A, Ware SB, Wexler A, Zettler PJ | The Hastings Center report | 33315254 | Hastings Cent Rep | 2020 Nov |
| The Future Is P-Tau-Anticipating Direct-to-Consumer Alzheimer Disease Blood Tests. | Largent EA, Wexler A, Karlawish J | JAMA neurology | 33393982 | JAMA Neurol | 2021 Apr 1 |
| Ethical and Legal Considerations of Alternative Neurotherapies. | Nagappan A, Kalokairinou L, Wexler A | AJOB neuroscience | 33759705 | AJOB Neurosci | 2021 Oct-Dec |
| Ethical issues in direct-to-consumer healthcare: A scoping review. | Nagappan A, Kalokairinou L, Wexler A | PLOS digital health | 38349902 | PLOS Digit Health | 2024 Feb |
| Policies of US Companies Offering Direct-to-Consumer Laboratory Tests. | Kalokairinou L, Choi R, Wei NY, Wexler A | JAMA internal medicine | 37721771 | JAMA Intern Med | 2023 Nov 1 |
| Off-Label Promotion of Transcranial Magnetic Stimulation on Provider Websites. | Wexler A, Nagappan A, Kopyto D, Santarnecchi E, Pascual-Leone A | Brain stimulation | 33901705 | Brain Stimul | 2021 May-Jun |
| Neurofeedback as placebo: a case of unintentional deception? | Kalokairinou L, Specker Sullivan L, Wexler A | Journal of medical ethics | 34521768 | J Med Ethics | 2022 Dec |
| Mapping the Landscape of Do-it-Yourself Medicine. | Wexler A | Citizen science : theory and practice | 36632334 | Citiz Sci | 2022 |
| To Counsel or Not to Counsel: Physician Attitudes and Experiences with Do-It-Yourself (DIY) Fecal Microbiota Transplant (FMT). | Colt SF, Choi RJ, Wexler A | AJOB empirical bioethics | 38935586 | AJOB Empir Bioeth | 2024 Oct-Dec |
| Extinction blunts paraventricular thalamic contributions to heroin relapse. | Giannotti G, Gong S, Fayette N, Heinsbroek JA, Orfila JE, Herson PS, Ford CP, Peters J | Cell reports | 34433067 | Cell Rep | 2021 Aug 24 |
| Ventral pallidal regulation of motivated behaviors and reinforcement. | Soares-Cunha C, Heinsbroek JA | Frontiers in neural circuits | 36817646 | Front Neural Circuits | 2023 |
| Oxytocin and orexin systems bidirectionally regulate the ability of opioid cues to bias reward seeking. | Giannotti G, Mottarlini F, Heinsbroek JA, Mandel MR, James MH, Peters J | Translational psychiatry | 36195606 | Transl Psychiatry | 2022 Oct 4 |
| Cocaine shifts dopamine D2 receptor sensitivity to gate conditioned behaviors. | Gong S, Fayette N, Heinsbroek JA, Ford CP | Neuron | 34506723 | Neuron | 2021 Nov 3 |
| A common limiter circuit for opioid choice and relapse identified in a rodent addiction model. | Heinsbroek JA, Giannotti G, Mandel MR, Josey M, Aston-Jones G, James MH, Peters J | Nature communications | 34373454 | Nat Commun | 2021 Aug 9 |
| The psychedelic drug DOI reduces heroin motivation by targeting 5-HT2A receptors in a heroin and alcohol co-use model. | Bonilla J, Giannotti G, Kregar NP, Heinsbroek JA, Olson DE, Peters J | Neuropharmacology | 39341333 | Neuropharmacology | 2024 Dec 15 |
| Circuit selectivity in drug versus natural reward seeking behaviors. | Nall RW, Heinsbroek JA, Nentwig TB, Kalivas PW, Bobadilla AC | Journal of neurochemistry | 33420731 | J Neurochem | 2021 Jun |
| Opposing Regulation of Cocaine Seeking by Glutamate and GABA Neurons in the Ventral Pallidum. | Heinsbroek JA, Bobadilla AC, Dereschewitz E, Assali A, Chalhoub RM, Cowan CW, Kalivas PW | Cell reports | 32049028 | Cell Rep | 2020 Feb 11 |
| Glutamatergic Systems and Memory Mechanisms Underlying Opioid Addiction. | Heinsbroek JA, De Vries TJ, Peters J | Cold Spring Harbor perspectives in medicine | 32341068 | Cold Spring Harb Perspect Med | 2021 Mar 1 |
| Tabernanthalog Reduces Motivation for Heroin and Alcohol in a Polydrug Use Model. | Heinsbroek JA, Giannotti G, Bonilla J, Olson DE, Peters J | Psychedelic medicine (New Rochelle, N.Y.) | 37360328 | Psychedelic Med (New Rochelle) | 2023 Jun 1 |
| Ca(V)3.1 T-type calcium channels are important for spatial memory processing in the dorsal subiculum. | Joksimovic SM, Ghodsi SM, Heinsbroek JA, Orfila JE, Busquet N, Tesic V, Valdez R, Fine-Raquet B, Jevtovic-Todorovic V, Raol YH, Herson PS, Todorovic SM | Neuropharmacology | 36586474 | Neuropharmacology | 2023 Mar 15 |
| Museum Genomics Illuminate the High Specificity of a Bioluminescent Symbiosis for a Genus of Reef Fish. | Gould AL, Fritts-Penniman A, Gaisiner A | Frontiers in ecology and evolution | 34485316 | Front Ecol Evol | 2021 Feb |
| Strain-level diversity of symbiont communities between individuals and populations of a bioluminescent fish. | Gould AL, Donohoo SA, Román ED, Neff EE | The ISME journal | 37891426 | ISME J | 2023 Dec |
| Comparative genomics of symbiotic Photobacterium using highly contiguous genome assemblies from long read sequences. | Gould AL, Henderson JB | Microbial genomics | 38112751 | Microb Genom | 2023 Dec |
| Chromosome-Level Genome Assembly of the Bioluminescent Cardinalfish Siphamia tubifer: An Emerging Model for Symbiosis Research. | Gould AL, Henderson JB, Lam AW | Genome biology and evolution | 35349687 | Genome Biol Evol | 2022 Apr 10 |
| Organ-specific fuel rewiring in acute and chronic hypoxia redistributes glucose and fatty acid metabolism. | Midha AD, Zhou Y, Queliconi BB, Barrios AM, Haribowo AG, Chew BTL, Fong COY, Blecha JE, VanBrocklin H, Seo Y, Jain IH | Cell metabolism | 36889284 | Cell Metab | 2023 Mar 7 |
| Oxygen toxicity causes cyclic damage by destabilizing specific Fe-S cluster-containing protein complexes. | Baik AH, Haribowo AG, Chen X, Queliconi BB, Barrios AM, Garg A, Maishan M, Campos AR, Matthay MA, Jain IH | Molecular cell | 36893757 | Mol Cell | 2023 Mar 16 |
| Turning the Oxygen Dial: Balancing the Highs and Lows. | Baik AH, Jain IH | Trends in cell biology | 32386878 | Trends Cell Biol | 2020 Jul |
| In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response. | Chen X, Haribowo AG, Baik AH, Fossati A, Stevenson E, Chen YR, Reyes NS, Peng T, Matthay MA, Traglia M, Pico AR, Jarosz DF, Buchwalter A, Ghaemmaghami S, Swaney DL, Jain IH | Science advances | 38064566 | Sci Adv | 2023 Dec 8 |
| The Goldilocks Oxygen Principle: not too little and not too much. | Flanigan WR, Jain IH | Nature cardiovascular research | 36816751 | Nat Cardiovasc Res | 2022 Dec |
| The Cytosolic DNA-Sensing cGAS-STING Pathway in Cancer. | Kwon J, Bakhoum SF | Cancer discovery | 31852718 | Cancer Discov | 2020 Jan |
| A CINful way to overcome addiction: how chromosomal instability enables cancer to overcome its oncogene addiction. | Bronder D, Bakhoum SF | EMBO molecular medicine | 32072755 | EMBO Mol Med | 2020 Mar 6 |
| Intratumoral TREX1 Induction Promotes Immune Evasion by Limiting Type I IFN. | Toufektchan E, Dananberg A, Striepen J, Hickling JH, Shim A, Chen Y, Nichols A, Duran Paez MA, Mohr L, Bakhoum SF, Maciejowski J | Cancer immunology research | 38408184 | Cancer Immunol Res | 2024 Jun 4 |
| Limited Environmental Serine and Glycine Confer Brain Metastasis Sensitivity to PHGDH Inhibition. | Ngo B, Kim E, Osorio-Vasquez V, Doll S, Bustraan S, Liang RJ, Luengo A, Davidson SM, Ali A, Ferraro GB, Fischer GM, Eskandari R, Kang DS, Ni J, Plasger A, Rajasekhar VK, Kastenhuber ER, Bacha S, Sriram RK, Stein BD, Bakhoum SF, Snuderl M, Cotzia P, Healey JH, Mainolfi N, Suri V, Friedman A, Manfredi M, Sabatini DM, Jones DR, Yu M, Zhao JJ, Jain RK, Keshari KR, Davies MA, Vander Heiden MG, Hernando E, Mann M, Cantley LC, Pacold ME | Cancer discovery | 32571778 | Cancer Discov | 2020 Sep |
| Chromosomal instability as a source of genomic plasticity. | Al-Rawi DH, Bakhoum SF | Current opinion in genetics & development | 35526333 | Curr Opin Genet Dev | 2022 Jun |
| Biochemical, genomic, and epigenomic profiling of isolated cancer cell lines' micronuclei. | Agustinus AS, Bakhoum S | Methods in cell biology | 36064226 | Methods Cell Biol | 2022 |
| APOBEC3 as a driver of genetic intratumor heterogeneity. | Venkatesan S, Angelova M, Bartkova J, Bakhoum SF, Bartek J, Kanu N, Swanton C | Molecular & cellular oncology | 38116246 | Mol Cell Oncol | 2023 |
| The Multifaceted Role of Chromosomal Instability in Cancer and Its Microenvironment. | Bakhoum SF, Cantley LC | Cell | 30193109 | Cell | 2018 Sep 6 |
| Expanding the Role of STING in Cellular Homeostasis and Transformation. | Li J, Bakhoum SF | Trends in cancer | 30961826 | Trends Cancer | 2019 Apr |
| Metastasis and Immune Evasion from Extracellular cGAMP Hydrolysis. | Li J, Duran MA, Dhanota N, Chatila WK, Bettigole SE, Kwon J, Sriram RK, Humphries MP, Salto-Tellez M, James JA, Hanna MG, Melms JC, Vallabhaneni S, Litchfield K, Usaite I, Biswas D, Bareja R, Li HW, Martin ML, Dorsaint P, Cavallo JA, Li P, Pauli C, Gottesdiener L, DiPardo BJ, Hollmann TJ, Merghoub T, Wen HY, Reis-Filho JS, Riaz N, Su SM, Kalbasi A, Vasan N, Powell SN, Wolchok JD, Elemento O, Swanton C, Shoushtari AN, Parkes EE, Izar B, Bakhoum SF | Cancer discovery | 33372007 | Cancer Discov | 2021 May |
| cGAS-STING and the deadly CIN: how chronic inflammation represents a therapeutic vulnerability in chromosomally unstable cancers. | Bakhoum SF | Trends in cancer | 35915014 | Trends Cancer | 2022 Oct |
| Deep learning predicts chromosomal instability from histopathology images. | Xu Z, Verma A, Naveed U, Bakhoum SF, Khosravi P, Elemento O | iScience | 33997679 | iScience | 2021 May 21 |
| Dissecting the treatment-naive ecosystem of human melanoma brain metastasis. | Biermann J, Melms JC, Amin AD, Wang Y, Caprio LA, Karz A, Tagore S, Barrera I, Ibarra-Arellano MA, Andreatta M, Fullerton BT, Gretarsson KH, Sahu V, Mangipudy VS, Nguyen TTT, Nair A, Rogava M, Ho P, Koch PD, Banu M, Humala N, Mahajan A, Walsh ZH, Shah SB, Vaccaro DH, Caldwell B, Mu M, Wünnemann F, Chazotte M, Berhe S, Luoma AM, Driver J, Ingham M, Khan SA, Rapisuwon S, Slingluff CL Jr, Eigentler T, Röcken M, Carvajal R, Atkins MB, Davies MA, Agustinus A, Bakhoum SF, Azizi E, Siegelin M, Lu C, Carmona SJ, Hibshoosh H, Ribas A, Canoll P, Bruce JN, Bi WL, Agrawal P, Schapiro D, Hernando E, Macosko EZ, Chen F, Schwartz GK, Izar B | Cell | 35803246 | Cell | 2022 Jul 7 |
| Chromosomal instability as a driver of cancer progression. | Chen X, Agustinus AS, Li J, DiBona M, Bakhoum SF | Nature reviews. Genetics | 39075192 | Nat Rev Genet | 2025 Jan |
| Non-cell-autonomous cancer progression from chromosomal instability. | Li J, Hubisz MJ, Earlie EM, Duran MA, Hong C, Varela AA, Lettera E, Deyell M, Tavora B, Havel JJ, Phyu SM, Amin AD, Budre K, Kamiya E, Cavallo JA, Garris C, Powell S, Reis-Filho JS, Wen H, Bettigole S, Khan AJ, Izar B, Parkes EE, Laughney AM, Bakhoum SF | Nature | 37612508 | Nature | 2023 Aug |
| Breast Radiation Therapy Under COVID-19 Pandemic Resource Constraints-Approaches to Defer or Shorten Treatment From a Comprehensive Cancer Center in the United States. | Braunstein LZ, Gillespie EF, Hong L, Xu A, Bakhoum SF, Cuaron J, Mueller B, McCormick B, Cahlon O, Powell S, Khan AJ | Advances in radiation oncology | 32292842 | Adv Radiat Oncol | 2020 Jul-Aug |
| Regenerative lineages and immune-mediated pruning in lung cancer metastasis. | Laughney AM, Hu J, Campbell NR, Bakhoum SF, Setty M, Lavallée VP, Xie Y, Masilionis I, Carr AJ, Kottapalli S, Allaj V, Mattar M, Rekhtman N, Xavier JB, Mazutis L, Poirier JT, Rudin CM, Pe'er D, Massagué J | Nature medicine | 32042191 | Nat Med | 2020 Feb |
| Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations. | Loh PR, Genovese G, Handsaker RE, Finucane HK, Reshef YA, Palamara PF, Birmann BM, Talkowski ME, Bakhoum SF, McCarroll SA, Price AL | Nature | 29995854 | Nature | 2018 Jul |
| The pleiotropic roles of cGAS-STING signaling in the tumor microenvironment. | Li J, Bakhoum SF | Journal of molecular cell biology | 35325182 | J Mol Cell Biol | 2022 Aug 5 |
| Induction of APOBEC3 Exacerbates DNA Replication Stress and Chromosomal Instability in Early Breast and Lung Cancer Evolution. | Venkatesan S, Angelova M, Puttick C, Zhai H, Caswell DR, Lu WT, Dietzen M, Galanos P, Evangelou K, Bellelli R, Lim EL, Watkins TBK, Rowan A, Teixeira VH, Zhao Y, Chen H, Ngo B, Zalmas LP, Al Bakir M, Hobor S, Grönroos E, Pennycuick A, Nigro E, Campbell BB, Brown WL, Akarca AU, Marafioti T, Wu MY, Howell M, Boulton SJ, Bertoli C, Fenton TR, de Bruin RAM, Maya-Mendoza A, Santoni-Rugiu E, Hynds RE, Gorgoulis VG, Jamal-Hanjani M, McGranahan N, Harris RS, Janes SM, Bartkova J, Bakhoum SF, Bartek J, Kanu N, Swanton C, TRACERx Consortium | Cancer discovery | 33947663 | Cancer Discov | 2021 Oct |
| Co-targeting TGF-β and PD-L1 with radiation therapy: The Goldilocks principle. | Bakhoum SF, Rudin CM | Cell reports. Medicine | 34622240 | Cell Rep Med | 2021 Sep 21 |
| The Evolution of STING Signaling and Its Involvement in Cancer. | Vashi N, Bakhoum SF | Trends in biochemical sciences | 33461879 | Trends Biochem Sci | 2021 Jun |
| Pervasive chromosomal instability and karyotype order in tumour evolution. | Watkins TBK, Lim EL, Petkovic M, Elizalde S, Birkbak NJ, Wilson GA, Moore DA, Grönroos E, Rowan A, Dewhurst SM, Demeulemeester J, Dentro SC, Horswell S, Au L, Haase K, Escudero M, Rosenthal R, Bakir MA, Xu H, Litchfield K, Lu WT, Mourikis TP, Dietzen M, Spain L, Cresswell GD, Biswas D, Lamy P, Nordentoft I, Harbst K, Castro-Giner F, Yates LR, Caramia F, Jaulin F, Vicier C, Tomlinson IPM, Brastianos PK, Cho RJ, Bastian BC, Dyrskjøt L, Jönsson GB, Savas P, Loi S, Campbell PJ, Andre F, Luscombe NM, Steeghs N, Tjan-Heijnen VCG, Szallasi Z, Turajlic S, Jamal-Hanjani M, Van Loo P, Bakhoum SF, Schwarz RF, McGranahan N, Swanton C | Nature | 32879494 | Nature | 2020 Nov |
| Targeting chromosomal instability in patients with cancer. | Al-Rawi DH, Lettera E, Li J, DiBona M, Bakhoum SF | Nature reviews. Clinical oncology | 38992122 | Nat Rev Clin Oncol | 2024 Sep |
| Genomic characterization of metastatic patterns from prospective clinical sequencing of 25,000 patients. | Nguyen B, Fong C, Luthra A, Smith SA, DiNatale RG, Nandakumar S, Walch H, Chatila WK, Madupuri R, Kundra R, Bielski CM, Mastrogiacomo B, Donoghue MTA, Boire A, Chandarlapaty S, Ganesh K, Harding JJ, Iacobuzio-Donahue CA, Razavi P, Reznik E, Rudin CM, Zamarin D, Abida W, Abou-Alfa GK, Aghajanian C, Cercek A, Chi P, Feldman D, Ho AL, Iyer G, Janjigian YY, Morris M, Motzer RJ, O'Reilly EM, Postow MA, Raj NP, Riely GJ, Robson ME, Rosenberg JE, Safonov A, Shoushtari AN, Tap W, Teo MY, Varghese AM, Voss M, Yaeger R, Zauderer MG, Abu-Rustum N, Garcia-Aguilar J, Bochner B, Hakimi A, Jarnagin WR, Jones DR, Molena D, Morris L, Rios-Doria E, Russo P, Singer S, Strong VE, Chakravarty D, Ellenson LH, Gopalan A, Reis-Filho JS, Weigelt B, Ladanyi M, Gonen M, Shah SP, Massague J, Gao J, Zehir A, Berger MF, Solit DB, Bakhoum SF, Sanchez-Vega F, Schultz N | Cell | 35120664 | Cell | 2022 Feb 3 |
| Epigenetic dysregulation from chromosomal transit in micronuclei. | Agustinus AS, Al-Rawi D, Dameracharla B, Raviram R, Jones BSCL, Stransky S, Scipioni L, Luebeck J, Di Bona M, Norkunaite D, Myers RM, Duran M, Choi S, Weigelt B, Yomtoubian S, McPherson A, Toufektchan E, Keuper K, Mischel PS, Mittal V, Shah SP, Maciejowski J, Storchova Z, Gratton E, Ly P, Landau D, Bakhoum MF, Koche RP, Sidoli S, Bafna V, David Y, Bakhoum SF | Nature | 37286593 | Nature | 2023 Jul |
| Loss of Pip4k2c confers liver-metastatic organotropism through insulin-dependent PI3K-AKT pathway activation. | Rogava M, Aprati TJ, Chi WY, Melms JC, Hug C, Davis SH, Earlie EM, Chung C, Deshmukh SK, Wu S, Sledge G, Tang S, Ho P, Amin AD, Caprio L, Gurjao C, Tagore S, Ngo B, Lee MJ, Zanetti G, Wang Y, Chen S, Ge W, Melo LMN, Allies G, Rösler J, Gibney GT, Schmitz OJ, Sykes M, Creusot RJ, Tüting T, Schadendorf D, Röcken M, Eigentler TK, Molotkov A, Mintz A, Bakhoum SF, Beyaz S, Cantley LC, Sorger PK, Meckelmann SW, Tasdogan A, Liu D, Laughney AM, Izar B | Nature cancer | 38286827 | Nat Cancer | 2024 Mar |
| Micronuclear collapse from oxidative damage. | Di Bona M, Chen Y, Agustinus AS, Mazzagatti A, Duran MA, Deyell M, Bronder D, Hickling J, Hong C, Scipioni L, Tedeschi G, Martin S, Li J, Ruzgaitė A, Riaz N, Shah P, D'Souza EK, Brodtman DZ, Sidoli S, Diplas B, Jalan M, Lee NY, Ordureau A, Izar B, Laughney AM, Powell S, Gratton E, Santaguida S, Maciejowski J, Ly P, Jeitner TM, Bakhoum SF | Science (New York, N.Y.) | 39208110 | Science | 2024 Aug 30 |
| Cancer metastasis as a non-healing wound. | Deyell M, Garris CS, Laughney AM | British journal of cancer | 33731858 | Br J Cancer | 2021 Apr |
| A Markov chain for numerical chromosomal instability in clonally expanding populations. | Elizalde S, Laughney AM, Bakhoum SF | PLoS computational biology | 30204765 | PLoS Comput Biol | 2018 Sep |
| Re-awakening Innate Immune Signaling in Cancer: The Development of Highly Potent ENPP1 Inhibitors. | Cogan D, Bakhoum SF | Cell chemical biology | 33217310 | Cell Chem Biol | 2020 Nov 19 |
| Loss of polycomb repressive complex 1 activity and chromosomal instability drive uveal melanoma progression. | Bakhoum MF, Francis JH, Agustinus A, Earlie EM, Di Bona M, Abramson DH, Duran M, Masilionis I, Molina E, Shoushtari AN, Goldbaum MH, Mischel PS, Bakhoum SF, Laughney AM | Nature communications | 34518527 | Nat Commun | 2021 Sep 13 |
| The clinical and molecular significance associated with STING signaling in breast cancer. | Parkes EE, Humphries MP, Gilmore E, Sidi FA, Bingham V, Phyu SM, Craig S, Graham C, Miller J, Griffin D, Salto-Tellez M, Madden SF, Kennedy RD, Bakhoum SF, McQuaid S, Buckley NE | NPJ breast cancer | 34172750 | NPJ Breast Cancer | 2021 Jun 25 |
| APOBEC3A drives STING-dependent metastasis. | Bakhoum SF | Nature cancer | 35121905 | Nat Cancer | 2021 Dec |
| A p62-dependent rheostat dictates micronuclei catastrophe and chromosome rearrangements. | Martin S, Scorzoni S, Cordone S, Mazzagatti A, Beznoussenko GV, Gunn AL, Di Bona M, Eliezer Y, Leor G, Ben-Yishay T, Loffreda A, Cancila V, Rainone MC, Ippolito MR, Martis V, Bedin F, Garrè M, Vaites LP, Vasapolli P, Polo S, Parazzoli D, Tripodo C, Mironov AA, Cuomo A, Ben-David U, Bakhoum SF, Hatch EM, Ly P, Santaguida S | Science (New York, N.Y.) | 39208097 | Science | 2024 Aug 30 |
| Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation. | Cooper CJ, Zheng K, Rush KW, Johs A, Sanders BC, Pavlopoulos GA, Kyrpides NC, Podar M, Ovchinnikov S, Ragsdale SW, Parks JM | Communications biology | 32561885 | Commun Biol | 2020 Jun 19 |
| Structure-based protein design with deep learning. | Ovchinnikov S, Huang PS | Current opinion in chemical biology | 34547592 | Curr Opin Chem Biol | 2021 Dec |
| Accurate prediction of protein structures and interactions using a three-track neural network. | Baek M, DiMaio F, Anishchenko I, Dauparas J, Ovchinnikov S, Lee GR, Wang J, Cong Q, Kinch LN, Schaeffer RD, Millán C, Park H, Adams C, Glassman CR, DeGiovanni A, Pereira JH, Rodrigues AV, van Dijk AA, Ebrecht AC, Opperman DJ, Sagmeister T, Buhlheller C, Pavkov-Keller T, Rathinaswamy MK, Dalwadi U, Yip CK, Burke JE, Garcia KC, Grishin NV, Adams PD, Read RJ, Baker D | Science (New York, N.Y.) | 34282049 | Science | 2021 Aug 20 |
| Protein sequence design by conformational landscape optimization. | Norn C, Wicky BIM, Juergens D, Liu S, Kim D, Tischer D, Koepnick B, Anishchenko I, Foldit Players, Baker D, Ovchinnikov S | Proceedings of the National Academy of Sciences of the United States of America | 33712545 | Proc Natl Acad Sci U S A | 2021 Mar 16 |
| De novo design of small beta barrel proteins. | Kim DE, Jensen DR, Feldman D, Tischer D, Saleem A, Chow CM, Li X, Carter L, Milles L, Nguyen H, Kang A, Bera AK, Peterson FC, Volkman BF, Ovchinnikov S, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 36897987 | Proc Natl Acad Sci U S A | 2023 Mar 14 |
| Protein language models learn evolutionary statistics of interacting sequence motifs. | Zhang Z, Wayment-Steele HK, Brixi G, Wang H, Kern D, Ovchinnikov S | Proceedings of the National Academy of Sciences of the United States of America | 39467119 | Proc Natl Acad Sci U S A | 2024 Nov 5 |
| Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex. | Wu X, Siggel M, Ovchinnikov S, Mi W, Svetlov V, Nudler E, Liao M, Hummer G, Rapoport TA | Science (New York, N.Y.) | 32327568 | Science | 2020 Apr 24 |
| A structural biology community assessment of AlphaFold2 applications. | Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, Dunham AS, Burke D, Borkakoti N, Velankar S, Frost A, Basquin J, Lindorff-Larsen K, Bateman A, Kajava AV, Valencia A, Ovchinnikov S, Durairaj J, Ascher DB, Thornton JM, Davey NE, Stein A, Elofsson A, Croll TI, Beltrao P | Nature structural & molecular biology | 36344848 | Nat Struct Mol Biol | 2022 Nov |
| Cyclic peptide structure prediction and design using AlphaFold. | Rettie SA, Campbell KV, Bera AK, Kang A, Kozlov S, De La Cruz J, Adebomi V, Zhou G, DiMaio F, Ovchinnikov S, Bhardwaj G | bioRxiv : the preprint server for biology | 36865323 | bioRxiv | 2023 Feb 26 |
| De novo protein design by deep network hallucination. | Anishchenko I, Pellock SJ, Chidyausiku TM, Ramelot TA, Ovchinnikov S, Hao J, Bafna K, Norn C, Kang A, Bera AK, DiMaio F, Carter L, Chow CM, Montelione GT, Baker D | Nature | 34853475 | Nature | 2021 Dec |
| Protein interaction networks revealed by proteome coevolution. | Cong Q, Anishchenko I, Ovchinnikov S, Baker D | Science (New York, N.Y.) | 31296772 | Science | 2019 Jul 12 |
| A demonstration of unsupervised machine learning in species delimitation. | Derkarabetian S, Castillo S, Koo PK, Ovchinnikov S, Hedin M | Molecular phylogenetics and evolution | 31323334 | Mol Phylogenet Evol | 2019 Oct |
| Scaffolding protein functional sites using deep learning. | Wang J, Lisanza S, Juergens D, Tischer D, Watson JL, Castro KM, Ragotte R, Saragovi A, Milles LF, Baek M, Anishchenko I, Yang W, Hicks DR, Expòsit M, Schlichthaerle T, Chun JH, Dauparas J, Bennett N, Wicky BIM, Muenks A, DiMaio F, Correia B, Ovchinnikov S, Baker D | Science (New York, N.Y.) | 35862514 | Science | 2022 Jul 22 |
| Unraveling the functional dark matter through global metagenomics. | Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E, Novel Metagenome Protein Families Consortium, Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC | Nature | 37821698 | Nature | 2023 Oct |
| Genomic language model predicts protein co-regulation and function. | Hwang Y, Cornman AL, Kellogg EH, Ovchinnikov S, Girguis PR | Nature communications | 38570504 | Nat Commun | 2024 Apr 3 |
| Easy and accurate protein structure prediction using ColabFold. | Kim G, Lee S, Levy Karin E, Kim H, Moriwaki Y, Ovchinnikov S, Steinegger M, Mirdita M | Nature protocols | 39402428 | Nat Protoc | 2025 Mar |
| Improved protein structure prediction using predicted interresidue orientations. | Yang J, Anishchenko I, Park H, Peng Z, Ovchinnikov S, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 31896580 | Proc Natl Acad Sci U S A | 2020 Jan 21 |
| ColabFold: making protein folding accessible to all. | Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M | Nature methods | 35637307 | Nat Methods | 2022 Jun |
| Validation of de novo designed water-soluble and transmembrane β-barrels by in silico folding and melting. | Hermosilla AM, Berner C, Ovchinnikov S, Vorobieva AA | Protein science : a publication of the Protein Society | 38864690 | Protein Sci | 2024 Jul |
| End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. | Petti S, Bhattacharya N, Rao R, Dauparas J, Thomas N, Zhou J, Rush AM, Koo P, Ovchinnikov S | Bioinformatics (Oxford, England) | 36355460 | Bioinformatics | 2023 Jan 1 |
| Computational design of soluble and functional membrane protein analogues. | Goverde CA, Pacesa M, Goldbach N, Dornfeld LJ, Balbi PEM, Georgeon S, Rosset S, Kapoor S, Choudhury J, Dauparas J, Schellhaas C, Kozlov S, Baker D, Ovchinnikov S, Vecchio AJ, Correia BE | Nature | 38898281 | Nature | 2024 Jul |
| Scalable protein design using optimization in a relaxed sequence space. | Frank C, Khoshouei A, Fuβ L, Schiwietz D, Putz D, Weber L, Zhao Z, Hattori M, Feng S, de Stigter Y, Ovchinnikov S, Dietz H | Science (New York, N.Y.) | 39446959 | Science | 2024 Oct 25 |
| Molecular imaging of bacterial infections: Overcoming the barriers to clinical translation. | Ordonez AA, Sellmyer MA, Gowrishankar G, Ruiz-Bedoya CA, Tucker EW, Palestro CJ, Hammoud DA, Jain SK | Science translational medicine | 31484790 | Sci Transl Med | 2019 Sep 4 |
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| From chemoproteomic-detected amino acids to genomic coordinates: insights into precise multi-omic data integration. | Palafox MF, Desai HS, Arboleda VA, Backus KM | Molecular systems biology | 33599394 | Mol Syst Biol | 2021 Feb |
| KAT6A Syndrome: genotype-phenotype correlation in 76 patients with pathogenic KAT6A variants. | Kennedy J, Goudie D, Blair E, Chandler K, Joss S, McKay V, Green A, Armstrong R, Lees M, Kamien B, Hopper B, Tan TY, Yap P, Stark Z, Okamoto N, Miyake N, Matsumoto N, Macnamara E, Murphy JL, McCormick E, Hakonarson H, Falk MJ, Li D, Blackburn P, Klee E, Babovic-Vuksanovic D, Schelley S, Hudgins L, Kant S, Isidor B, Cogne B, Bradbury K, Williams M, Patel C, Heussler H, Duff-Farrier C, Lakeman P, Scurr I, Kini U, Elting M, Reijnders M, Schuurs-Hoeijmakers J, Wafik M, Blomhoff A, Ruivenkamp CAL, Nibbeling E, Dingemans AJM, Douine ED, Nelson SF, DDD Study,, Hempel M, Bierhals T, Lessel D, Johannsen J, Arboleda VA, Newbury-Ecob R | Genetics in medicine : official journal of the American College of Medical Genetics | 30245513 | Genet Med | 2019 Apr |
| KAT6A mutations in Arboleda-Tham syndrome drive epigenetic regulation of posterior HOXC cluster. | Singh M, Spendlove SJ, Wei A, Bondhus LM, Nava AA, de L Vitorino FN, Amano S, Lee J, Echeverria G, Gomez D, Garcia BA, Arboleda VA | Human genetics | 37861717 | Hum Genet | 2023 Dec |
| Electronic health record signatures identify undiagnosed patients with common variable immunodeficiency disease. | Johnson R, Stephens AV, Mester R, Knyazev S, Kohn LA, Freund MK, Bondhus L, Hill BL, Schwarz T, Zaitlen N, Arboleda VA, A Bastarache L, Pasaniuc B, Butte MJ | Science translational medicine | 38691621 | Sci Transl Med | 2024 May |
| ASXL1 truncating variants in BOS and myeloid leukemia drive shared disruption of Wnt-signaling pathways but have differential isoform usage of RUNX3. | Lin I, Awamleh Z, Sinvhal M, Wan A, Bondhus L, Wei A, Russell BE, Weksberg R, Arboleda VA | BMC medical genomics | 39614348 | BMC Med Genomics | 2024 Nov 29 |
| Increased Frequency of Clonal Hematopoiesis of Indeterminate Potential in Bloom Syndrome Probands and Carriers. | Lin I, Wei A, Gebo TA, Boutros PC, Flanagan M, Kucine N, Cunniff C, Arboleda VA, Chang VY | medRxiv : the preprint server for health sciences | 38370823 | medRxiv | 2024 Feb 6 |
| Multiomics of Bohring-Opitz syndrome truncating ASXL1 mutations identify canonical and noncanonical Wnt signaling dysregulation. | Lin I, Wei A, Awamleh Z, Singh M, Ning A, Herrera A, REACH Biobank and Registry, Russell BE, Weksberg R, Arboleda VA | JCI insight | 37053013 | JCI Insight | 2023 May 22 |
| Deep learning predicts the impact of regulatory variants on cell-type-specific enhancers in the brain. | Zheng A, Shen Z, Glass CK, Gymrek M | Bioinformatics advances | 36726730 | Bioinform Adv | 2023 |
| Patterns of de novo tandem repeat mutations and their role in autism. | Mitra I, Huang B, Mousavi N, Ma N, Lamkin M, Yanicky R, Shleizer-Burko S, Lohmueller KE, Gymrek M | Nature | 33442040 | Nature | 2021 Jan |
| Polymorphic short tandem repeats make widespread contributions to blood and serum traits. | Margoliash J, Fuchs S, Li Y, Zhang X, Massarat A, Goren A, Gymrek M | Cell genomics | 38116119 | Cell Genom | 2023 Dec 13 |
| Missing heritability may be hiding in repeats. | Gymrek M, Goren A | Science (New York, N.Y.) | 34554784 | Science | 2021 Sep 24 |
| Profiling the genome-wide landscape of tandem repeat expansions. | Mousavi N, Shleizer-Burko S, Yanicky R, Gymrek M | Nucleic acids research | 31194863 | Nucleic Acids Res | 2019 Sep 5 |
| TRTools: a toolkit for genome-wide analysis of tandem repeats. | Mousavi N, Margoliash J, Pusarla N, Saini S, Yanicky R, Gymrek M | Bioinformatics (Oxford, England) | 32805020 | Bioinformatics | 2021 May 5 |
| WebSTR: A Population-wide Database of Short Tandem Repeat Variation in Humans. | Lundström OS, Adriaan Verbiest M, Xia F, Jam HZ, Zlobec I, Anisimova M, Gymrek M | Journal of molecular biology | 37678708 | J Mol Biol | 2023 Oct 15 |
| Targeted genotyping of variable number tandem repeats with adVNTR. | Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V | Genome research | 30352806 | Genome Res | 2018 Nov |
| The impact of short tandem repeat variation on gene expression. | Fotsing SF, Margoliash J, Wang C, Saini S, Yanicky R, Shleizer-Burko S, Goren A, Gymrek M | Nature genetics | 31676866 | Nat Genet | 2019 Nov |
| A reference haplotype panel for genome-wide imputation of short tandem repeats. | Saini S, Mitra I, Mousavi N, Fotsing SF, Gymrek M | Nature communications | 30353011 | Nat Commun | 2018 Oct 23 |
| Combined innate and adaptive immunotherapy overcomes resistance of immunologically cold syngeneic murine neuroblastoma to checkpoint inhibition. | Voeller J, Erbe AK, Slowinski J, Rasmussen K, Carlson PM, Hoefges A, VandenHeuvel S, Stuckwisch A, Wang X, Gillies SD, Patel RB, Farrel A, Rokita JL, Maris J, Hank JA, Morris ZS, Rakhmilevich AL, Sondel PM | Journal for immunotherapy of cancer | 31810498 | J Immunother Cancer | 2019 Dec 6 |
| (90)Y-NM600 targeted radionuclide therapy induces immunologic memory in syngeneic models of T-cell Non-Hodgkin's Lymphoma. | Hernandez R, Walker KL, Grudzinski JJ, Aluicio-Sarduy E, Patel R, Zahm CD, Pinchuk AN, Massey CF, Bitton AN, Brown RJ, Sondel PM, Morris ZS, Engle JW, Capitini CM, Weichert JP | Communications biology | 30820474 | Commun Biol | 2019 |
| In situ vaccination at a peripheral tumor site augments response against melanoma brain metastases. | Clark PA, Sriramaneni RN, Jin WJ, Jagodinsky JC, Bates AM, Jaquish AA, Anderson BR, Le T, Lubin JA, Chakravarty I, Arthur IS, Heinze CM, Guy EI, Kler J, Klar KA, Carlson PM, Kim KM, Kuo JS, Morris ZS | Journal for immunotherapy of cancer | 32690669 | J Immunother Cancer | 2020 Jul |
| Tumor-Specific Inhibition of In Situ Vaccination by Distant Untreated Tumor Sites. | Morris ZS, Guy EI, Werner LR, Carlson PM, Heinze CM, Kler JS, Busche SM, Jaquish AA, Sriramaneni RN, Carmichael LL, Loibner H, Gillies SD, Korman AJ, Erbe AK, Hank JA, Rakhmilevich AL, Harari PM, Sondel PM | Cancer immunology research | 29748391 | Cancer Immunol Res | 2018 Jul |
| Using Radiation Therapy to Prime and Propagate an Anti-tumor Immune Response Against Brain Tumors. | Onate AJ, Clark PA, Morris ZS | Neuromolecular medicine | 34081276 | Neuromolecular Med | 2022 Mar |
| Tumor-Specific Antibody, Cetuximab, Enhances the In Situ Vaccine Effect of Radiation in Immunologically Cold Head and Neck Squamous Cell Carcinoma. | Jin WJ, Erbe AK, Schwarz CN, Jaquish AA, Anderson BR, Sriramaneni RN, Jagodinsky JC, Bates AM, Clark PA, Le T, Lan KH, Chen Y, Kim K, Morris ZS | Frontiers in immunology | 33281820 | Front Immunol | 2020 |
| In situ Vaccine Plus Checkpoint Blockade Induces Memory Humoral Response. | Baniel CC, Heinze CM, Hoefges A, Sumiec EG, Hank JA, Carlson PM, Jin WJ, Patel RB, Sriramaneni RN, Gillies SD, Erbe AK, Schwarz CN, Pieper AA, Rakhmilevich AL, Sondel PM, Morris ZS | Frontiers in immunology | 32849544 | Front Immunol | 2020 |
| The Promise of Combining Radiation Therapy With Immunotherapy. | Jagodinsky JC, Harari PM, Morris ZS | International journal of radiation oncology, biology, physics | 32335187 | Int J Radiat Oncol Biol Phys | 2020 Sep 1 |
| Priming and Propagating Anti-tumor Immunity: Focal Hypofractionated Radiation for in Situ Vaccination and Systemic Targeted Radionuclide Theranostics for Immunomodulation of Tumor Microenvironments. | Jagodinsky JC, Morris ZS | Seminars in radiation oncology | 32381297 | Semin Radiat Oncol | 2020 Apr |
| Development of an In Situ Cancer Vaccine via Combinational Radiation and Bacterial-Membrane-Coated Nanoparticles. | Patel RB, Ye M, Carlson PM, Jaquish A, Zangl L, Ma B, Wang Y, Arthur I, Xie R, Brown RJ, Wang X, Sriramaneni R, Kim K, Gong S, Morris ZS | Advanced materials (Deerfield Beach, Fla.) | 31523868 | Adv Mater | 2019 Oct |
| Combination of Bempegaldesleukin and Anti-CTLA-4 Prevents Metastatic Dissemination After Primary Resection or Radiotherapy in a Preclinical Model of Non-Small Cell Lung Cancer. | Bates AM, Brown RJ, Pieper AA, Zangl LM, Arthur I, Carlson PM, Le T, Sosa GA, Clark PA, Sriramaneni RN, Kim K, Patel RB, Morris ZS | Frontiers in oncology | 33937052 | Front Oncol | 2021 |
| Local TLR4 stimulation augments in situ vaccination induced via local radiation and anti-CTLA-4 checkpoint blockade through induction of CD8 T-cell independent Th1 polarization. | Jagodinsky JC, Bates AM, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarty I, Nystuen EJ, Kim K, Sondel PM, Jin WJ, Morris ZS | Journal for immunotherapy of cancer | 36192087 | J Immunother Cancer | 2022 Oct |
| Factors impacting the efficacy of the in-situ vaccine with CpG and OX40 agonist. | Pieper AA, Spiegelman DV, Felder MAR, Feils AS, Tsarovsky NW, Zaborek J, Morris ZS, Erbe AK, Rakhmilevich AL, Sondel PM | Cancer immunology, immunotherapy : CII | 37016127 | Cancer Immunol Immunother | 2023 Jul |
| Multifunctional nanoparticle potentiates the in situ vaccination effect of radiation therapy and enhances response to immune checkpoint blockade. | Zhang Y, Sriramaneni RN, Clark PA, Jagodinsky JC, Ye M, Jin W, Wang Y, Bates A, Kerr CP, Le T, Allawi R, Wang X, Xie R, Havighurst TC, Chakravarty I, Rakhmilevich AL, O'Leary KA, Schuler LA, Sondel PM, Kim K, Gong S, Morris ZS | Nature communications | 35999216 | Nat Commun | 2022 Aug 23 |
| NK cells propagate T cell immunity following in situ tumor vaccination. | Jin WJ, Jagodinsky JC, Vera JM, Clark PA, Zuleger CL, Erbe AK, Ong IM, Le T, Tetreault K, Berg T, Rakhmilevich AL, Kim K, Newton MA, Albertini MR, Sondel PM, Morris ZS | Cell reports | 38096050 | Cell Rep | 2023 Dec 26 |
| Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade. | Jagodinsky JC, Vera JM, Jin WJ, Shea AG, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarthy I, Allawi RH, Kim K, Harari PM, Sondel PM, Newton MA, Crittenden MR, Gough MJ, Miller JR, Ong IM, Morris ZS | Science translational medicine | 39292804 | Sci Transl Med | 2024 Sep 18 |
| Transcriptional-mediated effects of radiation on the expression of immune susceptibility markers in melanoma. | Werner LR, Kler JS, Gressett MM, Riegert M, Werner LK, Heinze CM, Kern JG, Abbariki M, Erbe AK, Patel RB, Sriramaneni RN, Harari PM, Morris ZS | Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology | 28893414 | Radiother Oncol | 2017 Sep |
| Temporal analysis of type 1 interferon activation in tumor cells following external beam radiotherapy or targeted radionuclide therapy. | Jagodinsky JC, Jin WJ, Bates AM, Hernandez R, Grudzinski JJ, Marsh IR, Chakravarty I, Arthur IS, Zangl LM, Brown RJ, Nystuen EJ, Emma SE, Kerr C, Carlson PM, Sriramaneni RN, Engle JW, Aluicio-Sarduy E, Barnhart TE, Le T, Kim K, Bednarz BP, Weichert JP, Patel RB, Morris ZS | Theranostics | 33995649 | Theranostics | 2021 |
| Low-dose targeted radionuclide therapy renders immunologically cold tumors responsive to immune checkpoint blockade. | Patel RB, Hernandez R, Carlson P, Grudzinski J, Bates AM, Jagodinsky JC, Erbe A, Marsh IR, Arthur I, Aluicio-Sarduy E, Sriramaneni RN, Jin WJ, Massey C, Rakhmilevich AL, Vail D, Engle JW, Le T, Kim K, Bednarz B, Sondel PM, Weichert J, Morris ZS | Science translational medicine | 34261797 | Sci Transl Med | 2021 Jul 14 |
| ATM inhibition augments type I interferon response and antitumor T-cell immunity when combined with radiation therapy in murine tumor models. | Jin WJ, Zangl LM, Hyun M, Massoud E, Schroeder K, Alexandridis RA, Morris ZS | Journal for immunotherapy of cancer | 37730275 | J Immunother Cancer | 2023 Sep |
| Developments in Combining Targeted Radionuclide Therapies and Immunotherapies for Cancer Treatment. | Kerr CP, Grudzinski JJ, Nguyen TP, Hernandez R, Weichert JP, Morris ZS | Pharmaceutics | 36678756 | Pharmaceutics | 2022 Dec 30 |
| Low-Dose Radiation Potentiates the Propagation of Anti-Tumor Immunity against Melanoma Tumor in the Brain after In Situ Vaccination at a Tumor outside the Brain. | Clark PA, Sriramaneni RN, Bates AM, Jin WJ, Jagodinsky JC, Hernandez R, Le T, Jeffery JJ, Marsh IR, Grudzinski JJ, Aluicio-Sarduy E, Barnhart TE, Anderson BR, Chakravarty I, Arthur IS, Kim K, Engle JW, Bednarz BP, Weichert JP, Morris ZS | Radiation research | 33826741 | Radiat Res | 2021 Jun 1 |
| Depth of tumor implantation affects response to in situ vaccination in a syngeneic murine melanoma model. | Carlson PM, Mohan M, Rodriguez M, Subbotin V, Sun CX, Patel RB, Birstler J, Hank JA, Rakhmilevich AL, Morris ZS, Erbe AK, Sondel PM | Journal for immunotherapy of cancer | 33858849 | J Immunother Cancer | 2021 Apr |
| A multipurpose brachytherapy catheter to enable intratumoral injection. | Jagodinsky JC, Medeiros G, Raj HH, Razuan A, Locsin A, Dempsey TG, Tang B, Chakravarty I, Clark PA, Sriramaneni RN, Jin WJ, Lan KH, Das RK, Miller JR, Suarez-Gonzalez D, Morris ZS | Brachytherapy | 33785280 | Brachytherapy | 2021 Jul-Aug |
| Combining brachytherapy and immunotherapy to achieve in situ tumor vaccination: A review of cooperative mechanisms and clinical opportunities. | Patel RB, Baniel CC, Sriramaneni RN, Bradley K, Markovina S, Morris ZS | Brachytherapy | 30078541 | Brachytherapy | 2018 Nov-Dec |
| The Radiobiology of Radiopharmaceuticals. | Morris ZS, Wang AZ, Knox SJ | Seminars in radiation oncology | 33246632 | Semin Radiat Oncol | 2021 Jan |
| Optimizing Flow Cytometric Analysis of Immune Cells in Samples Requiring Cryopreservation from Tumor-Bearing Mice. | Carlson PM, Mohan M, Patel RB, Birstler J, Nettenstrom L, Sheerar D, Fox K, Rodriguez M, Hoefges A, Hernandez R, Zahm C, Kim K, McNeel DG, Weichert J, Morris ZS, Sondel PM | Journal of immunology (Baltimore, Md. : 1950) | 34261667 | J Immunol | 2021 Jul 15 |
| Radiation to all macroscopic sites of tumor permits greater systemic antitumor response to in situ vaccination. | Carlson PM, Patel RB, Birstler J, Rodriquez M, Sun C, Erbe AK, Bates AM, Marsh I, Grudzinski J, Hernandez R, Pieper AA, Feils AS, Rakhmilevich AL, Weichert JP, Bednarz BP, Sondel PM, Morris ZS | Journal for immunotherapy of cancer | 36639155 | J Immunother Cancer | 2023 Jan |
| Combination of radiation therapy, bempegaldesleukin, and checkpoint blockade eradicates advanced solid tumors and metastases in mice. | Pieper AA, Rakhmilevich AL, Spiegelman DV, Patel RB, Birstler J, Jin WJ, Carlson PM, Charych DH, Hank JA, Erbe AK, Overwijk WW, Morris ZS, Sondel PM | Journal for immunotherapy of cancer | 34172518 | J Immunother Cancer | 2021 Jun |
| Radiation Augments the Local Anti-Tumor Effect of In Situ Vaccine With CpG-Oligodeoxynucleotides and Anti-OX40 in Immunologically Cold Tumor Models. | Pieper AA, Zangl LM, Speigelman DV, Feils AS, Hoefges A, Jagodinsky JC, Felder MA, Tsarovsky NW, Arthur IS, Brown RJ, Birstler J, Le T, Carlson PM, Bates AM, Hank JA, Rakhmilevich AL, Erbe AK, Sondel PM, Patel RB, Morris ZS | Frontiers in immunology | 34868010 | Front Immunol | 2021 |
| In Situ Vaccination Following Intratumoral Injection of IL2 and Poly-l-lysine/Iron Oxide/CpG Nanoparticles to a Radiated Tumor Site. | Zhang Y, Rahman MM, Clark PA, Sriramaneni RN, Havighurst T, Kerr CP, Zhu M, Jones J, Wang X, Kim K, Gong S, Morris ZS | ACS nano | 37216491 | ACS Nano | 2023 Jun 13 |
| Antibody landscape of C57BL/6 mice cured of B78 melanoma via a combined radiation and immunocytokine immunotherapy regimen. | Hoefges A, McIlwain SJ, Erbe AK, Mathers N, Xu A, Melby D, Tetreault K, Le T, Kim K, Pinapati RS, Garcia BH, Patel J, Heck M, Feils AS, Tsarovsky N, Hank JA, Morris ZS, Ong IM, Sondel PM | Frontiers in immunology | 38077403 | Front Immunol | 2023 |
| MRI-Guided Radiation Therapy. | Lee SL, Hall WA, Morris ZS, Christensen L, Bassetti M | Advances in oncology | 37064601 | Adv Oncol | 2021 May |
| Online Developmental Science to Foster Innovation, Access, and Impact. | Sheskin M, Scott K, Mills CM, Bergelson E, Bonawitz E, Spelke ES, Fei-Fei L, Keil FC, Gweon H, Tenenbaum JB, Jara-Ettinger J, Adolph KE, Rhodes M, Frank MC, Mehr SA, Schulz L | Trends in cognitive sciences | 32624386 | Trends Cogn Sci | 2020 Sep |
| Citizen science can help to alleviate the generalizability crisis. | Hilton CB, Mehr SA | The Behavioral and brain sciences | 35139973 | Behav Brain Sci | 2022 Feb 10 |
| Universal interpretations of vocal music. | Yurdum L, Singh M, Glowacki L, Vardy T, Atkinson QD, Hilton CB, Sauter D, Krasnow MM, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 37676911 | Proc Natl Acad Sci U S A | 2023 Sep 12 |
| Spectro-temporal acoustical markers differentiate speech from song across cultures. | Albouy P, Mehr SA, Hoyer RS, Ginzburg J, Du Y, Zatorre RJ | Nature communications | 38844457 | Nat Commun | 2024 Jun 6 |
| Music, a piece of many puzzles in developmental science. | Mehr SA, Bortfeld H | Developmental science | 37501524 | Dev Sci | 2023 Sep |
| Sound-induced motion in chimpanzees does not imply shared ancestry for music or dance. | Bertolo M, Singh M, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 33443199 | Proc Natl Acad Sci U S A | 2021 Jan 12 |
| Children infer the behavioral contexts of unfamiliar foreign songs. | Hilton CB, Crowley-de Thierry L, Yan R, Martin A, Mehr SA | Journal of experimental psychology. General | 36222671 | J Exp Psychol Gen | 2023 Mar |
| Origins of music in credible signaling. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 32843107 | Behav Brain Sci | 2020 Aug 26 |
| Toward a productive evolutionary understanding of music. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 34588071 | Behav Brain Sci | 2021 Sep 30 |
| How games can make behavioural science better. | Long B, Simson J, Buxó-Lugo A, Watson DG, Mehr SA | Nature | 36650244 | Nature | 2023 Jan |
| Universality and diversity in human song. | Mehr SA, Singh M, Knox D, Ketter DM, Pickens-Jones D, Atwood S, Lucas C, Jacoby N, Egner AA, Hopkins EJ, Howard RM, Hartshorne JK, Jennings MV, Simson J, Bainbridge CM, Pinker S, O'Donnell TJ, Krasnow MM, Glowacki L | Science (New York, N.Y.) | 31753969 | Science | 2019 Nov 22 |
| Infants relax in response to unfamiliar foreign lullabies. | Bainbridge CM, Bertolo M, Youngers J, Atwood S, Yurdum L, Simson J, Lopez K, Xing F, Martin A, Mehr SA | Nature human behaviour | 33077883 | Nat Hum Behav | 2021 Feb |
| Acoustic regularities in infant-directed speech and song across cultures. | Hilton CB, Moser CJ, Bertolo M, Lee-Rubin H, Amir D, Bainbridge CM, Simson J, Knox D, Glowacki L, Alemu E, Galbarczyk A, Jasienska G, Ross CT, Neff MB, Martin A, Cirelli LK, Trehub SE, Song J, Kim M, Schachner A, Vardy TA, Atkinson QD, Salenius A, Andelin J, Antfolk J, Madhivanan P, Siddaiah A, Placek CD, Salali GD, Keestra S, Singh M, Collins SA, Patton JQ, Scaff C, Stieglitz J, Cutipa SC, Moya C, Sagar RR, Anyawire M, Mabulla A, Wood BM, Krasnow MM, Mehr SA | Nature human behaviour | 35851843 | Nat Hum Behav | 2022 Nov |
| The presence of fear: How subjective fear, not physiological changes, shapes the experience of presence. | Maymon CN, Crawford MT, Blackburne K, Botes A, Carnegie K, Mehr SA, Meier J, Murphy J, Miles NL, Robinson K, Tooley M, Grimshaw GM | Journal of experimental psychology. General | 38635168 | J Exp Psychol Gen | 2024 Jun |
| Expectancy Effects Threaten the Inferential Validity of Synchrony-Prosociality Research. | Atwood S, Schachner A, Mehr SA | Open mind : discoveries in cognitive science | 36891035 | Open Mind (Camb) | 2022 |
| Language experience predicts music processing in a half-million speakers of fifty-four languages. | Liu J, Hilton CB, Bergelson E, Mehr SA | Current biology : CB | 37105166 | Curr Biol | 2023 May 22 |
| Across demographics and recent history, most parents sing to their infants and toddlers daily. | Yan R, Jessani G, Spelke ES, de Villiers P, de Villiers J, Mehr SA | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 34719251 | Philos Trans R Soc Lond B Biol Sci | 2021 Dec 20 |
| The ability to predict actions of others from distributed cues is still developing in 6- to 8-year-old children. | McMahon E, Kim D, Mehr SA, Nakayama K, Spelke ES, Vaziri-Pashkam M | Journal of vision | 34003244 | J Vis | 2021 May 3 |
| Sight-over-sound judgments of music performances are replicable effects with limited interpretability. | Mehr SA, Scannell DA, Winner E | PloS one | 30183719 | PLoS One | 2018 |
| Form and Function in Human Song. | Mehr SA, Singh M, York H, Glowacki L, Krasnow MM | Current biology : CB | 29395919 | Curr Biol | 2018 Feb 5 |
| Response to vocal music in Angelman syndrome contrasts with Prader-Willi syndrome. | Kotler J, Mehr SA, Egner A, Haig D, Krasnow MM | Evolution and human behavior : official journal of the Human Behavior and Evolution Society | 32655274 | Evol Hum Behav | 2019 Sep |
| Developmental psychologists should adopt citizen science to improve generalization and reproducibility. | Li W, Germine LT, Mehr SA, Srinivasan M, Hartshorne J | Infant and child development | 38515737 | Infant Child Dev | 2024 Jan-Feb |
| Cross-Cultural Work in Music Cognition: Challenges, Insights, and Recommendations. | Jacoby N, Margulis EH, Clayton M, Hannon E, Honing H, Iversen J, Klein TR, Mehr SA, Pearson L, Peretz I, Perlman M, Polak R, Ravignani A, Savage PE, Steingo G, Stevens CJ, Trainor L, Trehub S, Veal M, Wald-Fuhrmann M | Music perception | 36936548 | Music Percept | 2020 Feb |
| Physician Payment Disparities and Access to Services-a Look Across Specialties. | Goodson JD, Shahbazi S, Song Z | Journal of general internal medicine | 31385213 | J Gen Intern Med | 2019 Nov |
| Will Increasing Primary Care Spending Alone Save Money? | Song Z, Gondi S | JAMA | 31415068 | JAMA | 2019 Oct 8 |
| Out-Of-Network Spending Mostly Declined In Privately Insured Populations With A Few Notable Exceptions From 2008 To 2016. | Song Z, Johnson W, Kennedy K, Biniek JF, Wallace J | Health affairs (Project Hope) | 32479236 | Health Aff (Millwood) | 2020 Jun |
| Mortality Before and After Border Wall Construction Along the US-Mexico Border, 1990-2017. | Bruch JD, Barin O, Venkataramani AS, Song Z | American journal of public health | 34197717 | Am J Public Health | 2021 Sep |
| A Policy Framework for the Growing Influence of Private Equity in Health Care Delivery. | Cai C, Song Z | JAMA | 37052901 | JAMA | 2023 May 9 |
| Health Care Utilization among Homeless-Experienced Adults Who Were Seen by a Mobile Addiction Health Clinic in Boston, Massachusetts: A Quasi-Experimental Study. | Fine DR, Joyce A, Chang Y, Lewis E, Weinstock K, Wright J, Gaeta J, Song Z, Baggett TP | Substance use & misuse | 37184078 | Subst Use Misuse | 2023 |
| Changes in Health Care Spending, Use, and Clinical Outcomes After Nonfatal Firearm Injuries Among Survivors and Family Members : A Cohort Study. | Song Z, Zubizarreta JR, Giuriato M, Paulos E, Koh KA | Annals of internal medicine | 35377713 | Ann Intern Med | 2022 Jun |
| Changes in use of low-value services during the COVID-19 pandemic. | Shahzad M, Song Z, Chernew ME, Fendrick AM | The American journal of managed care | 36374618 | Am J Manag Care | 2022 Nov |
| Expansion of Private Equity Involvement in Women's Health Care. | Bruch JD, Borsa A, Song Z, Richardson SS | JAMA internal medicine | 32833005 | JAMA Intern Med | 2020 Nov 1 |
| Incorporating value into physician payment and patient cost sharing. | Song Z, Navathe AS, Emanuel EJ, Volpp KG | The American journal of managed care | 29553274 | Am J Manag Care | 2018 Mar |
| Moving Beyond the Hospital. | McCarthy CP, Vaduganathan M, Song Z | Circulation | 30571513 | Circulation | 2018 Nov 13 |
| Evaluation of Economic and Clinical Outcomes Under Centers for Medicare & Medicaid Services Mandatory Bundled Payments for Joint Replacements. | Haas DA, Zhang X, Kaplan RS, Song Z | JAMA internal medicine | 31157819 | JAMA Intern Med | 2019 Jul 1 |
| Health Reform and Utilization of High-Volume Hospitals for Complex Cancer Operations. | Loehrer AP, Chang DC, Song Z, Chang GJ | Journal of oncology practice | 29155612 | J Oncol Pract | 2018 Jan |
| Potential Implications of Private Equity Investments in Health Care Delivery. | Gondi S, Song Z | JAMA | 30816912 | JAMA | 2019 Mar 19 |
| Out-of-Network Laboratory Test Spending, Utilization, and Prices in the US. | Song Z, Lillehaugen T, Wallace J | JAMA | 33904879 | JAMA | 2021 Apr 27 |
| Physician Practice Pattern Variations in Common Clinical Scenarios Within 5 US Metropolitan Areas. | Song Z, Kannan S, Gambrel RJ, Marino M, Vaduganathan M, Clapp MA, Seiglie JA, Bloom PP, Malik AN, Resnick MJ | JAMA health forum | 35977237 | JAMA Health Forum | 2022 Jan |
| Racial and Ethnic Disparities in Hospitalization Outcomes Among Medicare Beneficiaries During the COVID-19 Pandemic. | Song Z, Zhang X, Patterson LJ, Barnes CL, Haas DA | JAMA health forum | 35977303 | JAMA Health Forum | 2021 Dec |
| Characteristics of Private Equity-Owned Hospitals in 2018. | Bruch J, Zeltzer D, Song Z | Annals of internal medicine | 32986485 | Ann Intern Med | 2021 Feb |
| Implications of Changes in Medicare Payment and Documentation for Primary Care Spending and Time Use. | Basu S, Song Z, Phillips RS, Bitton A, Landon BE | Journal of general internal medicine | 32495087 | J Gen Intern Med | 2021 Mar |
| Association of Private Equity Acquisition of Physician Practices With Changes in Health Care Spending and Utilization. | Singh Y, Song Z, Polsky D, Bruch JD, Zhu JM | JAMA health forum | 36218927 | JAMA Health Forum | 2022 Sep 2 |
| Changes in Prescription Drug and Health Care Use Over 9 Years After the Large Drug Price Increase for Colchicine. | Ly DP, Giuriato MA, Song Z | JAMA internal medicine | 37155179 | JAMA Intern Med | 2023 Jul 1 |
| Firearm Injuries In Children And Adolescents: Health And Economic Consequences Among Survivors And Family Members. | Song Z, Zubizarreta JR, Giuriato M, Koh KA, Sacks CA | Health affairs (Project Hope) | 37931194 | Health Aff (Millwood) | 2023 Nov |
| Racial Disparities in Patient-Reported Measures of Physician Cultural Competency Among Cancer Survivors in the United States. | Butler SS, Winkfield KM, Ahn C, Song Z, Dee EC, Mahal BA, Sanford NN | JAMA oncology | 31670752 | JAMA Oncol | 2020 Jan 1 |
| The US Affordable Care Act: Reflections and directions at the close of a decade. | McIntyre A, Song Z | PLoS medicine | 30807584 | PLoS Med | 2019 Feb |
| Health Care Spending And Use Among People Experiencing Unstable Housing In The Era Of Accountable Care Organizations. | Koh KA, Racine M, Gaeta JM, Goldie J, Martin DP, Bock B, Takach M, O'Connell JJ, Song Z | Health affairs (Project Hope) | 32011951 | Health Aff (Millwood) | 2020 Feb |
| Mortality Quadrupled Among Opioid-Driven Hospitalizations, Notably Within Lower-Income And Disabled White Populations. | Song Z | Health affairs (Project Hope) | 29200349 | Health Aff (Millwood) | 2017 Dec |
| Taking account of accountable care. | Song Z | Health services research | 34105147 | Health Serv Res | 2021 Aug |
| Improving Affordability and Equity in Medicare Advantage. | Song Z, Basu S | Inquiry : a journal of medical care organization, provision and financing | 31208262 | Inquiry | 2019 Jan-Dec |
| Making the Affordable Care Act Marketplace More Affordable. | Song Z | JAMA health forum | 36046713 | JAMA Health Forum | 2021 May |
| Demographic And Clinical Factors Associated With Long COVID. | Song Z, Giuriato M | Health affairs (Project Hope) | 36877912 | Health Aff (Millwood) | 2023 Mar |
| Changes in Hospital Income, Use, and Quality Associated With Private Equity Acquisition. | Bruch JD, Gondi S, Song Z | JAMA internal medicine | 32833006 | JAMA Intern Med | 2020 Nov 1 |
| Out-of-Network Spending on Behavioral Health, 2008-2016. | Song Z, Lillehaugen T, Busch SH, Benson NM, Wallace J | Journal of general internal medicine | 31993946 | J Gen Intern Med | 2021 Jan |
| Physician-initiated payment reform: a new path toward value. | Gondi S, Ferris TG, Patel KK, Song Z | The American journal of managed care | 31518092 | Am J Manag Care | 2019 Sep |
| Dental Services Use: Medicare Beneficiaries Experience Immediate And Long-Term Reductions After Enrollment. | Simon L, Song Z, Barnett ML | Health affairs (Project Hope) | 36745837 | Health Aff (Millwood) | 2023 Feb |
| Health Care Spending Slowed After Rhode Island Applied Affordability Standards To Commercial Insurers. | Baum A, Song Z, Landon BE, Phillips RS, Bitton A, Basu S | Health affairs (Project Hope) | 30715981 | Health Aff (Millwood) | 2019 Feb |
| Prices And Cost Sharing For Psychotherapy In Network Versus Out Of Network In The United States. | Benson NM, Song Z | Health affairs (Project Hope) | 32634359 | Health Aff (Millwood) | 2020 Jul |
| Type 2 Myocardial Infarction and the Hospital Readmission Reduction Program. | McCarthy CP, Vaduganathan M, Singh A, Song Z, Blankstein R, Gaggin HK, Wasfy JH, Januzzi JL Jr | Journal of the American College of Cardiology | 30165988 | J Am Coll Cardiol | 2018 Sep 4 |
| Health Care Spending, Utilization, and Quality 8 Years into Global Payment. | Song Z, Ji Y, Safran DG, Chernew ME | The New England journal of medicine | 31314969 | N Engl J Med | 2019 Jul 18 |
| Differences in the Complexity of Office Visits by Physician Specialty: NAMCS 2013-2016. | Goodson JD, Shahbazi S, Rao K, Song Z | Journal of general internal medicine | 32157646 | J Gen Intern Med | 2020 Jun |
| Baby Boomers and Beds: a Demographic Challenge for the Ages. | Song Z, Ferris TG | Journal of general internal medicine | 29273896 | J Gen Intern Med | 2018 Mar |
| Changes in Out-of-Pocket Costs for US Hospital Admissions Between December and January Every Year. | Kannan S, Song Z | JAMA health forum | 37145689 | JAMA Health Forum | 2023 May 5 |
| Protecting Patients And Society In An Era Of Private Equity Provider Ownership: Challenges And Opportunities For Policy. | Cai C, Song Z | Health affairs (Project Hope) | 38709967 | Health Aff (Millwood) | 2024 May |
| Geographic Variation in Private Equity Penetration Across Select Office-Based Physician Specialties in the US. | Singh Y, Zhu JM, Polsky D, Song Z | JAMA health forum | 35977319 | JAMA Health Forum | 2022 Apr |
| Long-term ex vivo haematopoietic-stem-cell expansion allows nonconditioned transplantation. | Wilkinson AC, Ishida R, Kikuchi M, Sudo K, Morita M, Crisostomo RV, Yamamoto R, Loh KM, Nakamura Y, Watanabe M, Nakauchi H, Yamazaki S | Nature | 31142833 | Nature | 2019 Jul |
| Antibody Conditioning Enables MHC-Mismatched Hematopoietic Stem Cell Transplants and Organ Graft Tolerance. | George BM, Kao KS, Kwon HS, Velasco BJ, Poyser J, Chen A, Le AC, Chhabra A, Burnett CE, Cajuste D, Hoover M, Loh KM, Shizuru JA, Weissman IL | Cell stem cell | 31204177 | Cell Stem Cell | 2019 Aug 1 |
| Improving the safety of human pluripotent stem cell therapies using genome-edited orthogonal safeguards. | Martin RM, Fowler JL, Cromer MK, Lesch BJ, Ponce E, Uchida N, Nishimura T, Porteus MH, Loh KM | Nature communications | 32483127 | Nat Commun | 2020 Jun 1 |
| Affinity-matured DLL4 ligands as broad-spectrum modulators of Notch signaling. | Gonzalez-Perez D, Das S, Antfolk D, Ahsan HS, Medina E, Dundes CE, Jokhai RT, Egan ED, Blacklow SC, Loh KM, Rodriguez PC, Luca VC | Nature chemical biology | 36050494 | Nat Chem Biol | 2023 Jan |
| Lineage-tracing hematopoietic stem cell origins in vivo to efficiently make human HLF+ HOXA+ hematopoietic progenitors from pluripotent stem cells. | Fowler JL, Zheng SL, Nguyen A, Chen A, Xiong X, Chai T, Chen JY, Karigane D, Banuelos AM, Niizuma K, Kayamori K, Nishimura T, Cromer MK, Gonzalez-Perez D, Mason C, Liu DD, Yilmaz L, Miquerol L, Porteus MH, Luca VC, Majeti R, Nakauchi H, Red-Horse K, Weissman IL, Ang LT, Loh KM | Developmental cell | 38569552 | Dev Cell | 2024 May 6 |
| Building human artery and vein endothelial cells from pluripotent stem cells, and enduring mysteries surrounding arteriovenous development. | Loh KM, Ang LT | Seminars in cell & developmental biology | 37393122 | Semin Cell Dev Biol | 2024 Mar 1 |
| A critical look: Challenges in differentiating human pluripotent stem cells into desired cell types and organoids. | Fowler JL, Ang LT, Loh KM | Wiley interdisciplinary reviews. Developmental biology | 31746148 | Wiley Interdiscip Rev Dev Biol | 2020 May |
| A stem cell roadmap of ribosome heterogeneity reveals a function for RPL10A in mesoderm production. | Genuth NR, Shi Z, Kunimoto K, Hung V, Xu AF, Kerr CH, Tiu GC, Oses-Prieto JA, Salomon-Shulman REA, Axelrod JD, Burlingame AL, Loh KM, Barna M | Nature communications | 36123354 | Nat Commun | 2022 Sep 19 |
| Monolayer platform to generate and purify primordial germ-like cells in vitro provides insights into human germline specification. | Vijayakumar S, Sala R, Kang G, Chen A, Pablo MA, Adebayo AI, Cipriano A, Fowler JL, Gomes DL, Ang LT, Loh KM, Sebastiano V | Nature communications | 37709760 | Nat Commun | 2023 Sep 14 |
| A Roadmap for Human Liver Differentiation from Pluripotent Stem Cells. | Ang LT, Tan AKY, Autio MI, Goh SH, Choo SH, Lee KL, Tan J, Pan B, Lee JJH, Lum JJ, Lim CYY, Yeo IKX, Wong CJY, Liu M, Oh JLL, Chia CPL, Loh CH, Chen A, Chen Q, Weissman IL, Loh KM, Lim B | Cell reports | 29466743 | Cell Rep | 2018 Feb 20 |
| Generating human artery and vein cells from pluripotent stem cells highlights the arterial tropism of Nipah and Hendra viruses. | Ang LT, Nguyen AT, Liu KJ, Chen A, Xiong X, Curtis M, Martin RM, Raftry BC, Ng CY, Vogel U, Lander A, Lesch BJ, Fowler JL, Holman AR, Chai T, Vijayakumar S, Suchy FP, Nishimura T, Bhadury J, Porteus MH, Nakauchi H, Cheung C, George SC, Red-Horse K, Prescott JB, Loh KM | Cell | 35738284 | Cell | 2022 Jul 7 |
| Dach1 Extends Artery Networks and Protects Against Cardiac Injury. | Raftrey B, Williams M, Rios Coronado PE, Fan X, Chang AH, Zhao M, Roth R, Trimm E, Racelis R, D'Amato G, Phansalkar R, Nguyen A, Chai T, Gonzalez KM, Zhang Y, Ang LT, Loh KM, Bernstein D, Red-Horse K | Circulation research | 34383559 | Circ Res | 2021 Sep 17 |
| Creating artificial signaling gradients to spatially pattern engineered tissues. | Zheng SL, Loh KM | Current opinion in biotechnology | 36182872 | Curr Opin Biotechnol | 2022 Dec |
| DNMT3A(R882H) Is Not Required for Disease Maintenance in Primary Human AML, but Is Associated With Increased Leukemia Stem Cell Frequency. | Köhnke T, Karigane D, Hilgart E, Fan AC, Kayamori K, Miyauchi M, Collins CT, Suchy FP, Rangavajhula A, Feng Y, Nakauchi Y, Martinez-Montes E, Fowler JL, Loh KM, Nakauchi H, Koldobskiy MA, Feinberg AP, Majeti R | bioRxiv : the preprint server for biology | 39553934 | bioRxiv | 2024 Oct 29 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Lopez Acevedo SN, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | bioRxiv : the preprint server for biology | 32596696 | bioRxiv | 2020 Jun 23 |
| Antibody screening at reduced pH enables preferential selection of potently neutralizing antibodies targeting SARS-CoV-2. | Madan B, Reddem ER, Wang P, Casner RG, Nair MS, Huang Y, Fahad AS, de Souza MO, Banach BB, López Acevedo SN, Pan X, Nimrania R, Teng IT, Bahna F, Zhou T, Zhang B, Yin MT, Ho DD, Kwong PD, Shapiro L, DeKosky BJ | AIChE journal. American Institute of Chemical Engineers | 34898670 | AIChE J | 2021 Dec |
| Potent SARS-CoV-2 neutralizing antibodies directed against spike N-terminal domain target a single supersite. | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L | Cell host & microbe | 33789084 | Cell Host Microbe | 2021 May 12 |
| Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses. | Banach BB, Cerutti G, Fahad AS, Shen CH, Oliveira De Souza M, Katsamba PS, Tsybovsky Y, Wang P, Nair MS, Huang Y, Francino-Urdániz IM, Steiner PJ, Gutiérrez-González M, Liu L, López Acevedo SN, Nazzari AF, Wolfe JR, Luo Y, Olia AS, Teng IT, Yu J, Zhou T, Reddem ER, Bimela J, Pan X, Madan B, Laflin AD, Nimrania R, Yuen KY, Whitehead TA, Ho DD, Kwong PD, Shapiro L, DeKosky BJ | Cell reports | 34587480 | Cell Rep | 2021 Oct 5 |
| Neutralizing antibody 5-7 defines a distinct site of vulnerability in SARS-CoV-2 spike N-terminal domain. | Cerutti G, Guo Y, Wang P, Nair MS, Wang M, Huang Y, Yu J, Liu L, Katsamba PS, Bahna F, Reddem ER, Kwong PD, Ho DD, Sheng Z, Shapiro L | Cell reports | 34706271 | Cell Rep | 2021 Nov 2 |
| Antibody-dependent enhancement and SARS-CoV-2 vaccines and therapies. | Lee WS, Wheatley AK, Kent SJ, DeKosky BJ | Nature microbiology | 32908214 | Nat Microbiol | 2020 Oct |
| Functional Profiling of Antibody Immune Repertoires in Convalescent Zika Virus Disease Patients. | Fahad AS, Timm MR, Madan B, Burgomaster KE, Dowd KA, Normandin E, Gutiérrez-González MF, Pennington JM, De Souza MO, Henry AR, Laboune F, Wang L, Ambrozak DR, Gordon IJ, Douek DC, Ledgerwood JE, Graham BS, Castilho LR, Pierson TC, Mascola JR, DeKosky BJ | Frontiers in immunology | 33732238 | Front Immunol | 2021 |
| Mutational fitness landscapes reveal genetic and structural improvement pathways for a vaccine-elicited HIV-1 broadly neutralizing antibody. | Madan B, Zhang B, Xu K, Chao CW, O'Dell S, Wolfe JR, Chuang GY, Fahad AS, Geng H, Kong R, Louder MK, Nguyen TD, Rawi R, Schön A, Sheng Z, Nimrania R, Wang Y, Zhou T, Lin BC, Doria-Rose NA, Shapiro L, Kwong PD, DeKosky BJ | Proceedings of the National Academy of Sciences of the United States of America | 33649208 | Proc Natl Acad Sci U S A | 2021 Mar 9 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Lopez Acevedo SN, Madan B, Oliveira de Souza M, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang LA, Abiona OM, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | Cell reports | 33091382 | Cell Rep | 2020 Oct 27 |
| Molecular probes of spike ectodomain and its subdomains for SARS-CoV-2 variants, Alpha through Omicron. | Teng IT, Nazzari AF, Choe M, Liu T, Oliveira de Souza M, Petrova Y, Tsybovsky Y, Wang S, Zhang B, Artamonov M, Madan B, Huang A, Lopez Acevedo SN, Pan X, Ruckwardt TJ, DeKosky BJ, Mascola JR, Misasi J, Sullivan NJ, Zhou T, Kwong PD | PloS one | 35609088 | PLoS One | 2022 |
| Optimized single-cell gates for yeast display screening. | Pan X, de Souza MO, Figueiras FM, Huang A, Banach BB, Wolfe JR, Pirhanov A, Madan B, DeKosky BJ | Protein engineering, design & selection : PEDS | 39667035 | Protein Eng Des Sel | 2025 Jan 10 |
| The covalent SNAP tag for protein display quantification and low-pH protein engineering. | Jin W, Madan B, Mussman BK, Hailemariam AT, Fahad AS, Wolfe JR, Kwon YD, Zhang B, Shapiro L, Kwong PD, DeKosky BJ | Journal of biotechnology | 32561362 | J Biotechnol | 2020 Aug 20 |
| Linking autoantigen properties to mechanisms of immunity. | Griffin JD, Song JY, Sestak JO, DeKosky BJ, Berkland CJ | Advanced drug delivery reviews | 32325104 | Adv Drug Deliv Rev | 2020 |
| VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage. | Shen CH, DeKosky BJ, Guo Y, Xu K, Gu Y, Kilam D, Ko SH, Kong R, Liu K, Louder MK, Ou L, Zhang B, Chao CW, Corcoran MM, Feng E, Huang J, Normandin E, O'Dell S, Ransier A, Rawi R, Sastry M, Schmidt SD, Wang S, Wang Y, Chuang GY, Doria-Rose NA, Lin B, Zhou T, Boritz EA, Connors M, Douek DC, Karlsson Hedestam GB, Sheng Z, Shapiro L, Mascola JR, Kwong PD | Cell host & microbe | 32130953 | Cell Host Microbe | 2020 Apr 8 |
| Functional interrogation and mining of natively paired human V(H):V(L) antibody repertoires. | Wang B, DeKosky BJ, Timm MR, Lee J, Normandin E, Misasi J, Kong R, McDaniel JR, Delidakis G, Leigh KE, Niezold T, Choi CW, Viox EG, Fahad A, Cagigi A, Ploquin A, Leung K, Yang ES, Kong WP, Voss WN, Schmidt AG, Moody MA, Ambrozak DR, Henry AR, Laboune F, Ledgerwood JE, Graham BS, Connors M, Douek DC, Sullivan NJ, Ellington AD, Mascola JR, Georgiou G | Nature biotechnology | 29309060 | Nat Biotechnol | 2018 Feb |
| Bioinformatic Analysis of Natively Paired VH:VL Antibody Repertoires for Antibody Discovery. | Fahad AS, Madan B, DeKosky BJ | Methods in molecular biology (Clifton, N.J.) | 36346608 | Methods Mol Biol | 2023 |
| Highly protective antimalarial antibodies via precision library generation and yeast display screening. | Banach BB, Tripathi P, Da Silva Pereira L, Gorman J, Nguyen TD, Dillon M, Fahad AS, Kiyuka PK, Madan B, Wolfe JR, Bonilla B, Flynn B, Francica JR, Hurlburt NK, Kisalu NK, Liu T, Ou L, Rawi R, Schön A, Shen CH, Teng IT, Zhang B, Pancera M, Idris AH, Seder RA, Kwong PD, DeKosky BJ | The Journal of experimental medicine | 35736810 | J Exp Med | 2022 Aug 1 |
| Quality Control: Chain Pairing Precision and Monitoring of Cross-Sample Contamination: A Method by the AIRR Community. | Chung CY, Gutiérrez-González M, López Acevedo SN, Fahad AS, DeKosky BJ, AIRR Community | Methods in molecular biology (Clifton, N.J.) | 35622337 | Methods Mol Biol | 2022 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Acevedo SNL, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | SSRN | 32742241 | SSRN | 2020 Jul 21 |
| Tetrameric Fluorescent Antigen Arrays for Single-Step Identification of Antigen-Specific B Cells. | Apley KD, Griffin JD, Johnson SN, Berkland CJ, DeKosky BJ | Journal of visualized experiments : JoVE | 33165322 | J Vis Exp | 2020 Oct 20 |
| Ultrasonically-guided flow focusing generates precise emulsion droplets for high-throughput single cell analyses. | Lagerman CE, López Acevedo SN, Fahad AS, Hailemariam AT, Madan B, DeKosky BJ | Journal of bioscience and bioengineering | 30904454 | J Biosci Bioeng | 2019 Aug |
| Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site. | Banach BB, Pletnev S, Olia AS, Xu K, Zhang B, Rawi R, Bylund T, Doria-Rose NA, Nguyen TD, Fahad AS, Lee M, Lin BC, Liu T, Louder MK, Madan B, McKee K, O'Dell S, Sastry M, Schön A, Bui N, Shen CH, Wolfe JR, Chuang GY, Mascola JR, Kwong PD, DeKosky BJ | Nature communications | 37989731 | Nat Commun | 2023 Nov 21 |
| Cell activation-based screening of natively paired human T cell receptor repertoires. | Fahad AS, Chung CY, López Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ | Scientific reports | 37198258 | Sci Rep | 2023 May 17 |
| Optimized Production of Fc Fusion Proteins by Sortase Enzymatic Ligation. | Apley KD, Laflin AD, Johnson SN, Batrash N, Griffin JD, Berkland CJ, DeKosky BJ | Industrial & engineering chemistry research | 38646185 | Ind Eng Chem Res | 2021 Dec 1 |
| Antibody-guided structure-based vaccines. | Kwong PD, DeKosky BJ, Ulmer JB | Seminars in immunology | 33246736 | Semin Immunol | 2020 Aug |
| A molecular trap against COVID-19. | DeKosky BJ | Science (New York, N.Y.) | 32883851 | Science | 2020 Sep 4 |
| The Molecular Mechanisms That Underlie the Immune Biology of Anti-drug Antibody Formation Following Treatment With Monoclonal Antibodies. | Vaisman-Mentesh A, Gutierrez-Gonzalez M, DeKosky BJ, Wine Y | Frontiers in immunology | 33013848 | Front Immunol | 2020 |
| Structural basis for accommodation of emerging B.1.351 and B.1.1.7 variants by two potent SARS-CoV-2 neutralizing antibodies. | Cerutti G, Rapp M, Guo Y, Bahna F, Bimela J, Reddem ER, Yu J, Wang P, Liu L, Huang Y, Ho DD, Kwong PD, Sheng Z, Shapiro L | Structure (London, England : 1993) | 34111408 | Structure | 2021 Jul 1 |
| Mapping monoclonal anti-SARS-CoV-2 antibody repertoires against diverse coronavirus antigens. | de Souza MO, Madan B, Teng IT, Huang A, Liu L, Fahad AS, Lopez Acevedo SN, Pan X, Sastry M, Gutierrez-Gonzalez M, Yin MT, Zhou T, Ho DD, Kwong PD, DeKosky BJ | Frontiers in immunology | 36119018 | Front Immunol | 2022 |
| Immortalization and functional screening of natively paired human T cell receptor repertoires. | Fahad AS, Chung CY, Lopez Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ | Protein engineering, design & selection : PEDS | 35174859 | Protein Eng Des Sel | 2022 Feb 17 |
| A novel reticular node in the brainstem synchronizes neonatal mouse crying with breathing. | Wei XP, Collie M, Dempsey B, Fortin G, Yackle K | Neuron | 34998469 | Neuron | 2022 Feb 16 |
| Opioids depress breathing through two small brainstem sites. | Bachmutsky I, Wei XP, Kish E, Yackle K | eLife | 32073401 | Elife | 2020 Feb 19 |
| Transformation of Our Understanding of Breathing Control by Molecular Tools. | Yackle K | Annual review of physiology | 36323001 | Annu Rev Physiol | 2023 Feb 10 |
| ß-arrestin 2 germline knockout does not attenuate opioid respiratory depression. | Bachmutsky I, Wei XP, Durand A, Yackle K | eLife | 34002697 | Elife | 2021 May 18 |
| Co-option of the limb patterning program in cephalopod eye development. | Neal S, McCulloch KJ, Napoli FR, Daly CM, Coleman JH, Koenig KM | BMC biology | 34983491 | BMC Biol | 2022 Jan 5 |
| Krüppel-like factor/specificity protein evolution in the Spiralia and the implications for cephalopod visual system novelties. | McCulloch KJ, Koenig KM | Proceedings. Biological sciences | 33081641 | Proc Biol Sci | 2020 Oct 28 |
| Cephalopod retinal development shows vertebrate-like mechanisms of neurogenesis. | Napoli FR, Daly CM, Neal S, McCulloch KJ, Zaloga AR, Liu A, Koenig KM | Current biology : CB | 36356573 | Curr Biol | 2022 Dec 5 |
| Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields. | Agbleke AA, Amitai A, Buenrostro JD, Chakrabarti A, Chu L, Hansen AS, Koenig KM, Labade AS, Liu S, Nozaki T, Ovchinnikov S, Seeber A, Shaban HA, Spille JH, Stephens AD, Su JH, Wadduwage D | Molecular cell | 32768408 | Mol Cell | 2020 Sep 17 |
| Highly Efficient Knockout of a Squid Pigmentation Gene. | Crawford K, Diaz Quiroz JF, Koenig KM, Ahuja N, Albertin CB, Rosenthal JJC | Current biology : CB | 32735817 | Curr Biol | 2020 Sep 7 |
| Nematostella vectensis exemplifies the exceptional expansion and diversity of opsins in the eyeless Hexacorallia. | McCulloch KJ, Babonis LS, Liu A, Daly CM, Martindale MQ, Koenig KM | EvoDevo | 37735470 | Evodevo | 2023 Sep 21 |
| Evolution and development of complex eyes: a celebration of diversity. | Koenig KM, Gross JM | Development (Cambridge, England) | 33051250 | Development | 2020 Oct 13 |
| Artificially Enhancing and Suppressing Hippocampus-Mediated Memories. | Chen BK, Murawski NJ, Cincotta C, McKissick O, Finkelstein A, Hamidi AB, Merfeld E, Doucette E, Grella SL, Shpokayte M, Zaki Y, Fortin A, Ramirez S | Current biology : CB | 31130452 | Curr Biol | 2019 Jun 3 |
| Chronic Gq activation of ventral hippocampal neurons and astrocytes differentially affects memory and behavior. | Suthard RL, Jellinger AL, Surets M, Shpokayte M, Pyo AY, Buzharsky MD, Senne RA, Dorst K, Leblanc H, Ramirez S | Neurobiology of aging | 36801699 | Neurobiol Aging | 2023 May |
| Theta-phase-specific modulation of dentate gyrus memory neurons. | Rahsepar B, Norman JF, Noueihed J, Lahner B, Quick MH, Ghaemi K, Pandya A, Fernandez FR, Ramirez S, White JA | eLife | 37401757 | Elife | 2023 Jul 4 |
| Basolateral Amygdala Astrocytes Are Engaged by the Acquisition and Expression of a Contextual Fear Memory. | Suthard RL, Senne RA, Buzharsky MD, Pyo AY, Dorst KE, Diep AH, Cole RH, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 37268419 | J Neurosci | 2023 Jul 5 |
| Social reactivation of fear engrams enhances memory recall. | Finkelstein AB, Leblanc H, Cole RH, Gallerani T, Vieira A, Zaki Y, Ramirez S | Proceedings of the National Academy of Sciences of the United States of America | 35286206 | Proc Natl Acad Sci U S A | 2022 Mar 22 |
| Chronic activation of fear engrams induces extinction-like behavior in ethanol-exposed mice. | Cincotta C, Murawski NJ, Grella SL, McKissick O, Doucette E, Ramirez S | Hippocampus | 32946184 | Hippocampus | 2021 Jan |
| Linking Social Cognition to Learning and Memory. | Leblanc H, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 33177112 | J Neurosci | 2020 Nov 11 |
| Hippocampal cells segregate positive and negative engrams. | Shpokayte M, McKissick O, Guan X, Yuan B, Rahsepar B, Fernandez FR, Ruesch E, Grella SL, White JA, Liu XS, Ramirez S | Communications biology | 36163262 | Commun Biol | 2022 Sep 26 |
| Reactivating hippocampal-mediated memories during reconsolidation to disrupt fear. | Grella SL, Fortin AH, Ruesch E, Bladon JH, Reynolds LF, Gross A, Shpokayte M, Cincotta C, Zaki Y, Ramirez S | Nature communications | 36096993 | Nat Commun | 2022 Sep 12 |
| Hippocampus and amygdala fear memory engrams re-emerge after contextual fear relapse. | Zaki Y, Mau W, Cincotta C, Monasterio A, Odom E, Doucette E, Grella SL, Merfeld E, Shpokayte M, Ramirez S | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 35941286 | Neuropsychopharmacology | 2022 Oct |
| Hippocampal fear engrams modulate ethanol-induced maladaptive contextual generalization in mice. | Cincotta C, Ruesch E, Senne R, Ramirez S | Hippocampus | 35950345 | Hippocampus | 2022 Oct |
| Ensemble-specific deficit in neuronal intrinsic excitability in aged mice. | Chen L, Francisco TR, Baggetta AM, Zaki Y, Ramirez S, Clem RL, Shuman T, Cai DJ | Neurobiology of aging | 36652783 | Neurobiol Aging | 2023 Mar |
| Route-dependent spatial engram tagging in mouse dentate gyrus. | Wilmerding LK, Kondratyev I, Ramirez S, Hasselmo ME | Neurobiology of learning and memory | 36822466 | Neurobiol Learn Mem | 2023 Apr |
| Erasable Hippocampal Neural Signatures Predict Memory Discrimination. | Kinsky NR, Orlin DJ, Ruesch EA, Kim B, Coello S, Diba K, Ramirez S | bioRxiv : the preprint server for biology | 36778486 | bioRxiv | 2024 Dec 19 |
| Hippocampal Engrams Generate Variable Behavioral Responses and Brain-Wide Network States. | Dorst KE, Senne RA, Diep AH, de Boer AR, Suthard RL, Leblanc H, Ruesch EA, Pyo AY, Skelton S, Carstensen LC, Malmberg S, McKissick OP, Bladon JH, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 38050098 | J Neurosci | 2024 Jan 10 |
| Chronic activation of a negative engram induces behavioral and cellular abnormalities. | Jellinger AL, Suthard RL, Yuan B, Surets M, Ruesch EA, Caban AJ, Liu S, Shpokayte M, Ramirez S | eLife | 38990919 | Elife | 2024 Jul 11 |
| Reactivation of memory-associated neurons induces downstream suppression of competing neuronal populations. | Norman JF, Rahsepar B, Vena A, Thunemann M, Devor A, Ramirez S, White JA | Proceedings of the National Academy of Sciences of the United States of America | 40168126 | Proc Natl Acad Sci U S A | 2025 Apr 8 |
| Social behavior in mice following chronic optogenetic stimulation of hippocampal engrams. | Doucette E, Merfeld E, Leblanc H, Monasterio A, Cincotta C, Grella SL, Logan J, Ramirez S | Neurobiology of learning and memory | 33164892 | Neurobiol Learn Mem | 2020 Dec |
| Odor modulates the temporal dynamics of fear memory consolidation. | Grella SL, Fortin AH, McKissick O, Leblanc H, Ramirez S | Learning & memory (Cold Spring Harbor, N.Y.) | 32179657 | Learn Mem | 2020 Apr |
| Prelimbic cortex ensembles promote appetitive learning-associated behavior. | Surets M, Caban-Murillo A, Ramirez S | Learning & memory (Cold Spring Harbor, N.Y.) | 38408863 | Learn Mem | 2024 Jan-Feb |
| From Engrams to Pathologies of the Brain. | Denny CA, Lebois E, Ramirez S | Frontiers in neural circuits | 28439228 | Front Neural Circuits | 2017 |
| Benefits and Challenges in Using Seroprevalence Data to Inform Models for Measles and Rubella Elimination. | Winter AK, Martinez ME, Cutts FT, Moss WJ, Ferrari MJ, McKee A, Lessler J, Hayford K, Wallinga J, Metcalf CJE | The Journal of infectious diseases | 29562334 | J Infect Dis | 2018 Jul 2 |
| Rescuing Troves of Hidden Ecological Data to Tackle Emerging Mosquito-Borne Diseases. | Rund SSC, Moise IK, Beier JC, Martinez ME | Journal of the American Mosquito Control Association | 31442186 | J Am Mosq Control Assoc | 2019 Mar |
| Socioeconomic disparities in subway use and COVID-19 outcomes in New York City. | Sy KTL, Martinez ME, Rader B, White LF | medRxiv : the preprint server for health sciences | 32511568 | medRxiv | 2020 May 30 |
| Guidelines for Modeling and Reporting Health Effects of Climate Change Mitigation Actions. | Hess JJ, Ranadive N, Boyer C, Aleksandrowicz L, Anenberg SC, Aunan K, Belesova K, Bell ML, Bickersteth S, Bowen K, Burden M, Campbell-Lendrum D, Carlton E, Cissé G, Cohen F, Dai H, Dangour AD, Dasgupta P, Frumkin H, Gong P, Gould RJ, Haines A, Hales S, Hamilton I, Hasegawa T, Hashizume M, Honda Y, Horton DE, Karambelas A, Kim H, Kim SE, Kinney PL, Kone I, Knowlton K, Lelieveld J, Limaye VS, Liu Q, Madaniyazi L, Martinez ME, Mauzerall DL, Milner J, Neville T, Nieuwenhuijsen M, Pachauri S, Perera F, Pineo H, Remais JV, Saari RK, Sampedro J, Scheelbeek P, Schwartz J, Shindell D, Shyamsundar P, Taylor TJ, Tonne C, Van Vuuren D, Wang C, Watts N, West JJ, Wilkinson P, Wood SA, Woodcock J, Woodward A, Xie Y, Zhang Y, Ebi KL | Environmental health perspectives | 33170741 | Environ Health Perspect | 2020 Nov |
| Identifying optimal vaccination scenarios to reduce varicella zoster virus transmission and reactivation. | Bakker KM, Eisenberg MC, Woods RJ, Martinez ME | BMC medicine | 36209074 | BMC Med | 2022 Oct 8 |
| Circadian Rhythms in Environmental Health Sciences. | Leung JM, Martinez ME | Current environmental health reports | 32662059 | Curr Environ Health Rep | 2020 Sep |
| Cellular and transcriptional diversity over the course of human lactation. | Nyquist SK, Gao P, Haining TKJ, Retchin MR, Golan Y, Drake RS, Kolb K, Mead BE, Ahituv N, Martinez ME, Shalek AK, Berger B, Goods BA | Proceedings of the National Academy of Sciences of the United States of America | 35377806 | Proc Natl Acad Sci U S A | 2022 Apr 12 |
| Drivers of Infectious Disease Seasonality: Potential Implications for COVID-19. | Kronfeld-Schor N, Stevenson TJ, Nickbakhsh S, Schernhammer ES, Dopico XC, Dayan T, Martinez M, Helm B | Journal of biological rhythms | 33491541 | J Biol Rhythms | 2021 Feb |
| Daylight saving time and circadian rhythms in the neuro-endocrine-immune system: impact on cardiovascular health. | Tarquini R, Carbone A, Martinez M, Mazzoccoli G | Internal and emergency medicine | 30488154 | Intern Emerg Med | 2019 Jan |
| The calendar of epidemics: Seasonal cycles of infectious diseases. | Martinez ME | PLoS pathogens | 30408114 | PLoS Pathog | 2018 Nov |
| Socioeconomic Disparities in Subway Use and COVID-19 Outcomes in New York City. | Sy KTL, Martinez ME, Rader B, White LF | American journal of epidemiology | 33372209 | Am J Epidemiol | 2021 Jul 1 |
| Centring sexual and reproductive health and justice in the global COVID-19 response. | Hall KS, Samari G, Garbers S, Casey SE, Diallo DD, Orcutt M, Moresky RT, Martinez ME, McGovern T | Lancet (London, England) | 32278371 | Lancet | 2020 Apr 11 |
| Characterizing the modern light environment and its influence on circadian rhythms. | Khodasevich D, Tsui S, Keung D, Skene DJ, Revell V, Martinez ME | Proceedings. Biological sciences | 34284625 | Proc Biol Sci | 2021 Jul 28 |
| Social-distancing fatigue: Evidence from real-time crowd-sourced traffic data. | Shearston JA, Martinez ME, Nunez Y, Hilpert M | The Science of the total environment | 34153749 | Sci Total Environ | 2021 Oct 20 |
| Efficient allelic-drive in Drosophila. | Guichard A, Haque T, Bobik M, Xu XS, Klanseck C, Kushwah RBS, Berni M, Kaduskar B, Gantz VM, Bier E | Nature communications | 30967548 | Nat Commun | 2019 Apr 9 |
| Active Genetic Neutralizing Elements for Halting or Deleting Gene Drives. | Xu XS, Bulger EA, Gantz VM, Klanseck C, Heimler SR, Auradkar A, Bennett JB, Miller LA, Leahy S, Juste SS, Buchman A, Akbari OS, Marshall JM, Bier E | Molecular cell | 32949493 | Mol Cell | 2020 Oct 15 |
| CRISPR/Cas9 and active genetics-based trans-species replacement of the endogenous Drosophila kni-L2 CRM reveals unexpected complexity. | Xu XS, Gantz VM, Siomava N, Bier E | eLife | 29274230 | Elife | 2017 Dec 23 |
| CopyCatchers are versatile active genetic elements that detect and quantify inter-homolog somatic gene conversion. | Li Z, Marcel N, Devkota S, Auradkar A, Hedrick SM, Gantz VM, Bier E | Nature communications | 33976171 | Nat Commun | 2021 May 11 |
| Gene editing technologies and applications for insects. | Gantz VM, Akbari OS | Current opinion in insect science | 30551769 | Curr Opin Insect Sci | 2018 Aug |
| Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi. | Adolfi A, Gantz VM, Jasinskiene N, Lee HF, Hwang K, Terradas G, Bulger EA, Ramaiah A, Bennett JB, Emerson JJ, Marshall JM, Bier E, James AA | Nature communications | 33144570 | Nat Commun | 2020 Nov 3 |
| Core commitments for field trials of gene drive organisms. | Long KC, Alphey L, Annas GJ, Bloss CS, Campbell KJ, Champer J, Chen CH, Choudhary A, Church GM, Collins JP, Cooper KL, Delborne JA, Edwards OR, Emerson CI, Esvelt K, Evans SW, Friedman RM, Gantz VM, Gould F, Hartley S, Heitman E, Hemingway J, Kanuka H, Kuzma J, Lavery JV, Lee Y, Lorenzen M, Lunshof JE, Marshall JM, Messer PW, Montell C, Oye KA, Palmer MJ, Papathanos PA, Paradkar PN, Piaggio AJ, Rasgon JL, Rašić G, Rudenko L, Saah JR, Scott MJ, Sutton JT, Vorsino AE, Akbari OS | Science (New York, N.Y.) | 33335055 | Science | 2020 Dec 18 |
| A nickase Cas9 gene-drive system promotes super-Mendelian inheritance in Drosophila. | López Del Amo V, Juste SS, Gantz VM | Cell reports | 35613590 | Cell Rep | 2022 May 24 |
| A transcomplementing gene drive provides a flexible platform for laboratory investigation and potential field deployment. | López Del Amo V, Bishop AL, Sánchez C HM, Bennett JB, Feng X, Marshall JM, Bier E, Gantz VM | Nature communications | 31953404 | Nat Commun | 2020 Jan 17 |
| Double-tap gene drive uses iterative genome targeting to help overcome resistance alleles. | Bishop AL, López Del Amo V, Okamoto EM, Bodai Z, Komor AC, Gantz VM | Nature communications | 35534475 | Nat Commun | 2022 May 9 |
| Beyond the eye: Kynurenine pathway impairment causes midgut homeostasis dysfunction and survival and reproductive costs in blood-feeding mosquitoes. | Bottino-Rojas V, Ferreira-Almeida I, Nunes RD, Feng X, Pham TB, Kelsey A, Carballar-Lejarazú R, Gantz V, Oliveira PL, James AA | Insect biochemistry and molecular biology | 34999199 | Insect Biochem Mol Biol | 2022 Mar |
| CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. | Harvey-Samuel T, Feng X, Okamoto EM, Purusothaman DK, Leftwich PT, Alphey L, Gantz VM | Nature communications | 37985762 | Nat Commun | 2023 Nov 20 |
| CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. | Harvey-Samuel T, Feng X, Okamoto EM, Purusothaman DK, Leftwich PT, Alphey L, Gantz VM | bioRxiv : the preprint server for biology | 37398284 | bioRxiv | 2023 Jun 12 |
| Super-Mendelian inheritance mediated by CRISPR-Cas9 in the female mouse germline. | Grunwald HA, Gantz VM, Poplawski G, Xu XS, Bier E, Cooper KL | Nature | 30675057 | Nature | 2019 Feb |
| Small-Molecule Control of Super-Mendelian Inheritance in Gene Drives. | López Del Amo V, Leger BS, Cox KJ, Gill S, Bishop AL, Scanlon GD, Walker JA, Gantz VM, Choudhary A | Cell reports | 32610142 | Cell Rep | 2020 Jun 30 |
| Optimized CRISPR tools and site-directed transgenesis towards gene drive development in Culex quinquefasciatus mosquitoes. | Feng X, López Del Amo V, Mameli E, Lee M, Bishop AL, Perrimon N, Gantz VM | Nature communications | 34017003 | Nat Commun | 2021 May 20 |
| Assessment of a Split Homing Based Gene Drive for Efficient Knockout of Multiple Genes. | Kandul NP, Liu J, Buchman A, Gantz VM, Bier E, Akbari OS | G3 (Bethesda, Md.) | 31882406 | G3 (Bethesda) | 2020 Feb 6 |
| Targeting double-strand break indel byproducts with secondary guide RNAs improves Cas9 HDR-mediated genome editing efficiencies. | Bodai Z, Bishop AL, Gantz VM, Komor AC | Nature communications | 35534455 | Nat Commun | 2022 May 9 |
| Evaluation of Gene Knockouts by CRISPR as Potential Targets for the Genetic Engineering of the Mosquito Culex quinquefasciatus. | Feng X, Kambic L, Nishimoto JHK, Reed FA, Denton JA, Sutton JT, Gantz VM | The CRISPR journal | 34280034 | CRISPR J | 2021 Aug |
| Survival of tissue-resident memory T cells requires exogenous lipid uptake and metabolism. | Pan Y, Tian T, Park CO, Lofftus SY, Mei S, Liu X, Luo C, O'Malley JT, Gehad A, Teague JE, Divito SJ, Fuhlbrigge R, Puigserver P, Krueger JG, Hotamisligil GS, Clark RA, Kupper TS | Nature | 28219080 | Nature | 2017 Mar 9 |
| High-throughput sequencing of the T cell receptor β gene identifies aggressive early-stage mycosis fungoides. | de Masson A, O'Malley JT, Elco CP, Garcia SS, Divito SJ, Lowry EL, Tawa M, Fisher DC, Devlin PM, Teague JE, Leboeuf NR, Kirsch IR, Robins H, Clark RA, Kupper TS | Science translational medicine | 29743350 | Sci Transl Med | 2018 May 9 |
| SJS/TEN 2019: From science to translation. | Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC | Journal of dermatological science | 32192826 | J Dermatol Sci | 2020 Apr |
| Skin Resident Memory T Cells May Play Critical Role in Delayed-Type Drug Hypersensitivity Reactions. | Schunkert EM, Shah PN, Divito SJ | Frontiers in immunology | 34497600 | Front Immunol | 2021 |
| Systemic and skin-limited delayed-type drug hypersensitivity reactions associate with distinct resident and recruited T cell subsets. | Shah PN, Romar GA, Manukyan A, Ko WC, Hsieh PC, Velasquez GA, Schunkert EM, Fu X, Guleria I, Bronson RT, Wei K, Waldman AH, Vleugels FR, Liang MG, Giobbie-Hurder A, Mostaghimi A, Schmidt BA, Barrera V, Foreman RK, Garber M, Divito SJ | The Journal of clinical investigation | 39042477 | J Clin Invest | 2024 Jul 23 |
| Method of Generating Tolerogenic Maturation-Resistant Dendritic Cells and Testing for Their Immune-Regulatory Functions In Vivo in the Context of Transplantation. | Divito SJ, Morelli AE | Methods in molecular biology (Clifton, N.J.) | 30649773 | Methods Mol Biol | 2019 |
| Implementation of Genetic Screening to Prevent Severe Cutaneous Adverse Drug Reactions Is Crucial-Rebuttal From the Devil's Antagonist-Reply. | Divito SJ | JAMA dermatology | 31851296 | JAMA Dermatol | 2020 Feb 1 |
| Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis-Coordinating Research Priorities to Move the Field Forward. | Phillips EJ, Bouchard CS, Divito SJ | JAMA dermatology | 35353140 | JAMA Dermatol | 2022 Jun 1 |
| Advances in the Pathomechanisms of Delayed Drug Hypersensitivity. | Wang CW, Divito SJ, Chung WH, Hung SI | Immunology and allergy clinics of North America | 35469623 | Immunol Allergy Clin North Am | 2022 May |
| Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis: Associations, Outcomes, and Pathobiology-Thirty Years of Progress but Still Much to Be Done. | Stern RS, Divito SJ | The Journal of investigative dermatology | 28411832 | J Invest Dermatol | 2017 May |
| Physical and mental health impact of Stevens-Johnson syndrome/toxic epidermal necrolysis and post-hospital discharge care: Identifying practice gaps. | Coromilas AJ, Divito SJ, Phillips EJ, Micheletti RG | JAAD international | 36941915 | JAAD Int | 2023 Jun |
| Updates and Insights in the Diagnosis and Management of DRESS Syndrome. | Schunkert EM, Divito SJ | Current dermatology reports | 34777921 | Curr Dermatol Rep | 2021 |
| Cross-Sectional Study Evaluating Skin, Hair, Nail, and Bone Disease in Patients with Focal Dermal Hypoplasia. | Gunasekera NS, Divito JK, Kupper TS, Huang JT, Divito SJ | Pediatric dermatology | 28025844 | Pediatr Dermatol | 2017 Mar |
| Histologic features of graft-versus-host disease-associated angiomatosis: Insights into pathophysiology and treatment. | Li DJ, Romar GA, Hsieh PC, Wells M, Foreman RK, Lian CG, Divito SJ | Journal of the American Academy of Dermatology | 31923444 | J Am Acad Dermatol | 2020 Sep |
| Screening HLA to Prevent Severe Drug Reactions-A Devil's Advocate Perspective. | Divito SJ | JAMA dermatology | 30916720 | JAMA Dermatol | 2019 Jun 1 |
| Peripheral host T cells survive hematopoietic stem cell transplantation and promote graft-versus-host disease. | Divito SJ, Aasebø AT, Matos TR, Hsieh PC, Collin M, Elco CP, O'Malley JT, Bækkevold ES, Reims H, Gedde-Dahl T, Hagerstrom M, Hilaire J, Lian JW, Milford EL, Pinkus GS, Ho VT, Soiffer RJ, Kim HT, Mihm MC, Ritz J, Guleria I, Cutler CS, Clark RA, Jahnsen FL, Kupper TS | The Journal of clinical investigation | 32516138 | J Clin Invest | 2020 Sep 1 |
| Assessment of Need for Improved Identification of a Culprit Drug in Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis. | Li DJ, Velasquez GA, Romar GA, Schunkert EM, Foreman RK, Divito SJ | JAMA dermatology | 37342052 | JAMA Dermatol | 2023 Aug 1 |
| Corrigendum to 'SJS/TEN 2019: From science to translation' [J. Dermatol. Sci. 98/1 (2020) 2-12]. | Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC | Journal of dermatological science | 34763988 | J Dermatol Sci | 2021 Nov |
| HIV-Associated Immune Dysregulation in the Skin: A Crucible for Exaggerated Inflammation and Hypersensitivity. | Chimbetete T, Buck C, Choshi P, Selim R, Pedretti S, Divito SJ, Phillips EJ, Lehloenya R, Peter J | The Journal of investigative dermatology | 36549954 | J Invest Dermatol | 2023 Mar |
| IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy. | Zhou T, Damsky W, Weizman OE, McGeary MK, Hartmann KP, Rosen CE, Fischer S, Jackson R, Flavell RA, Wang J, Sanmamed MF, Bosenberg MW, Ring AM | Nature | 32581358 | Nature | 2020 Jul |
| IL-18BP mediates the balance between protective and pathological immune responses to Toxoplasma gondii. | Clark JT, Weizman OE, Aldridge DL, Shallberg LA, Eberhard J, Lanzar Z, Wasche D, Huck JD, Zhou T, Ring AM, Hunter CA | Cell reports | 36827187 | Cell Rep | 2023 Mar 28 |
| Diverse functional autoantibodies in patients with COVID-19. | Wang EY, Mao T, Klein J, Dai Y, Huck JD, Jaycox JR, Liu F, Zhou T, Israelow B, Wong P, Coppi A, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Zheng NS, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Team, Dela Cruz C, Farhadian SF, Schulz WL, Ma S, Grubaugh ND, Ko AI, Iwasaki A, Ring AM | Nature | 34010947 | Nature | 2021 Jul |
| Yeast surface display platform for rapid discovery of conformationally selective nanobodies. | McMahon C, Baier AS, Pascolutti R, Wegrecki M, Zheng S, Ong JX, Erlandson SC, Hilger D, Rasmussen SGF, Ring AM, Manglik A, Kruse AC | Nature structural & molecular biology | 29434346 | Nat Struct Mol Biol | 2018 Mar |
| Diverse Functional Autoantibodies in Patients with COVID-19. | Wang EY, Mao T, Klein J, Dai Y, Huck JD, Liu F, Zheng NS, Zhou T, Israelow B, Wong P, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Team, Cruz CD, Farhadian SF, Schulz WL, Grubaugh ND, Ko AI, Iwasaki A, Ring AM | medRxiv : the preprint server for health sciences | 33330894 | medRxiv | 2021 Feb 1 |
| High-throughput identification of autoantibodies that target the human exoproteome. | Wang EY, Dai Y, Rosen CE, Schmitt MM, Dong MX, Ferré EMN, Liu F, Yang Y, González-Hernández JA, Meffre E, Hinchcliff M, Koumpouras F, Lionakis MS, Ring AM | Cell reports methods | 35360706 | Cell Rep Methods | 2022 Feb 28 |
| Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses. | Clark LE, Mahmutovic S, Raymond DD, Dilanyan T, Koma T, Manning JT, Shankar S, Levis SC, Briggiler AM, Enria DA, Wucherpfennig KW, Paessler S, Abraham J | Nature communications | 29760382 | Nat Commun | 2018 May 14 |
| Transferrin receptor targeting by de novo sheet extension. | Sahtoe DD, Coscia A, Mustafaoglu N, Miller LM, Olal D, Vulovic I, Yu TY, Goreshnik I, Lin YR, Clark L, Busch F, Stewart L, Wysocki VH, Ingber DE, Abraham J, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 33879614 | Proc Natl Acad Sci U S A | 2021 Apr 27 |
| Ties that bind: the integration of plastid signalling pathways in plant cell metabolism. | Brunkard JO, Burch-Smith TM | Essays in biochemistry | 29563221 | Essays Biochem | 2018 Apr 13 |
| An updated nomenclature for plant ribosomal protein genes. | Scarpin MR, Busche M, Martinez RE, Harper LC, Reiser L, Szakonyi D, Merchante C, Lan T, Xiong W, Mo B, Tang G, Chen X, Bailey-Serres J, Browning KS, Brunkard JO | The Plant cell | 36423343 | Plant Cell | 2023 Feb 20 |
| Quantifying Plasmodesmatal Transport with an Improved GFP Movement Assay. | Horner W, Brunkard JO | Methods in molecular biology (Clifton, N.J.) | 35349148 | Methods Mol Biol | 2022 |
| Liguleless narrow and narrow odd dwarf act in overlapping pathways to regulate maize development and metabolism. | Abraham-Juárez MJ, Busche M, Anderson AA, Lunde C, Winders J, Christensen SA, Hunter CT, Hake S, Brunkard JO | The Plant journal : for cell and molecular biology | 36164819 | Plant J | 2022 Nov |
| DRMY1 promotes robust morphogenesis in Arabidopsis by sustaining the translation of cytokinin-signaling inhibitor proteins. | Kong S, Zhu M, Scarpin MR, Pan D, Jia L, Martinez RE, Alamos S, Vadde BVL, Garcia HG, Qian SB, Brunkard JO, Roeder AHK | Developmental cell | 39305905 | Dev Cell | 2024 Dec 2 |
| TOR coordinates nucleotide availability with ribosome biogenesis in plants. | Busche M, Scarpin MR, Hnasko R, Brunkard JO | The Plant cell | 33793860 | Plant Cell | 2021 Jul 2 |
| Light regulates alternative splicing outcomes via the TOR kinase pathway. | Riegler S, Servi L, Scarpin MR, Godoy Herz MA, Kubaczka MG, Venhuizen P, Meyer C, Brunkard JO, Kalyna M, Barta A, Petrillo E | Cell reports | 34496244 | Cell Rep | 2021 Sep 7 |
| Cytokinins Stimulate Plasmodesmatal Transport in Leaves. | Horner W, Brunkard JO | Frontiers in plant science | 34135930 | Front Plant Sci | 2021 |
| ConducTORs of a Signaling Symphony: Metabolic and Hormone Responses Converge on TOR and EIN2 in plants. | Brunkard JO, Chang C, Mayer BJ, Meyer C, Sheen J | Faculty reviews | 35719129 | Fac Rev | 2022 |
| TOR dynamically regulates plant cell-cell transport. | Brunkard JO, Xu M, Scarpin MR, Chatterjee S, Shemyakina EA, Goodman HM, Zambryski P | Proceedings of the National Academy of Sciences of the United States of America | 32051250 | Proc Natl Acad Sci U S A | 2020 Mar 3 |
| Plant Cell-Cell Transport via Plasmodesmata Is Regulated by Light and the Circadian Clock. | Brunkard JO, Zambryski P | Plant physiology | 31601643 | Plant Physiol | 2019 Dec |
| Editorial overview: Cell biology. | Gallagher KL, Brunkard JO | Current opinion in plant biology | 33342469 | Curr Opin Plant Biol | 2020 Dec |
| Amino Acid Signaling for TOR in Eukaryotes: Sensors, Transducers, and a Sustainable Agricultural fuTORe. | Lutt N, Brunkard JO | Biomolecules | 35327579 | Biomolecules | 2022 Mar 2 |
| LncRNA gets into the balancing act. | Li F, Brunkard JO, Baker B | Cell host & microbe | 35952640 | Cell Host Microbe | 2022 Aug 10 |
| Stress management: how NOD and LGN coordinate growth-defence tradeoffs in maize. | Pierroz G | The Plant journal : for cell and molecular biology | 36415090 | Plant J | 2022 Nov |
| Translating across kingdoms: target of rapamycin promotes protein synthesis through conserved and divergent pathways in plants. | Scarpin MR, Simmons CH, Brunkard JO | Journal of experimental botany | 35770874 | J Exp Bot | 2022 Nov 15 |
| The Second Site Modifier, Sympathy for the ligule, Encodes a Homolog of Arabidopsis ENHANCED DISEASE RESISTANCE4 and Rescues the Liguleless narrow Maize Mutant. | Anderson A, St Aubin B, Abraham-Juárez MJ, Leiboff S, Shen Z, Briggs S, Brunkard JO, Hake S | The Plant cell | 31217219 | Plant Cell | 2019 Aug |
| A Two-Headed Monster to Avert Disaster: HBS1/SKI7 Is Alternatively Spliced to Build Eukaryotic RNA Surveillance Complexes. | Brunkard JO, Baker B | Frontiers in plant science | 30258456 | Front Plant Sci | 2018 |
| Parallel global profiling of plant TOR dynamics reveals a conserved role for LARP1 in translation. | Scarpin MR, Leiboff S, Brunkard JO | eLife | 33054972 | Elife | 2020 Oct 15 |
| Exaptive Evolution of Target of Rapamycin Signaling in Multicellular Eukaryotes. | Brunkard JO | Developmental cell | 32649861 | Dev Cell | 2020 Jul 20 |
| Terminal ear 1 and phytochromes B1/B2 regulate maize leaf initiation independently. | Busche M, Hake S, Brunkard JO | Genetics | 36495288 | Genetics | 2023 Feb 9 |
| Chloroplast redox state changes mark cell-to-cell signaling in the hypersensitive response. | Lukan T, Županič A, Mahkovec Povalej T, Brunkard JO, Kmetič M, Juteršek M, Baebler Š, Gruden K | The New phytologist | 35946378 | New Phytol | 2023 Jan |
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| The role of body mass index at diagnosis of colorectal cancer on Black-White disparities in survival: a density regression mediation approach. | Devick KL, Valeri L, Chen J, Jara A, Bind MA, Coull BA | Biostatistics (Oxford, England) | 32968805 | Biostatistics | 2022 Apr 13 |
| Larval zebrafish as an in vitro model for evaluating toxicological effects of mycotoxins. | Juan-García A, Bind MA, Engert F | Ecotoxicology and environmental safety | 32800244 | Ecotoxicol Environ Saf | 2020 Oct 1 |
| Study of locomotion response and development in zebrafish (Danio rerio) embryos and larvae exposed to enniatin A, enniatin B, and beauvericin. | Juan-García A, Juan C, Bind MA, Engert F | The Science of the total environment | 33677298 | Sci Total Environ | 2021 Jul 10 |
| Heterogeneous ozone effects on the DNA methylome of bronchial cells observed in a crossover study. | Bind MC, Rubin DB, Cardenas A, Dhingra R, Ward-Caviness C, Liu Z, Mirowsky J, Schwartz JD, Diaz-Sanchez D, Devlin RB | Scientific reports | 32978449 | Sci Rep | 2020 Sep 25 |
| Controlled human exposures to diesel exhaust: a human epigenome-wide experiment of target bronchial epithelial cells. | Cardenas A, Fadadu RP, Van Der Laan L, Ward-Caviness C, Granger L, Diaz-Sanchez D, Devlin RB, Bind MA | Environmental epigenetics | 33859829 | Environ Epigenet | 2021 |
| Ozone, NO(2) and PM(10) are associated with the occurrence of multiple sclerosis relapses. Evidence from seasonal multi-pollutant analyses. | Jeanjean M, Bind MA, Roux J, Ongagna JC, de Sèze J, Bard D, Leray E | Environmental research | 29426027 | Environ Res | 2018 May |
| Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts. | Sturm G, Cardenas A, Bind MA, Horvath S, Wang S, Wang Y, Hägg S, Hirano M, Picard M | Epigenetics | 31156022 | Epigenetics | 2019 Oct |
| Racial and Ethnic Disparities in Early Childhood Obesity. | Isong IA, Rao SR, Bind MA, Avendaño M, Kawachi I, Richmond TK | Pediatrics | 29269386 | Pediatrics | 2018 Jan |
| Targeting emotional regulation using an Internet-delivered psychological intervention for cancer survivors: A randomized controlled trial. | Smith IS, Bind MA, Weihs KL, Bei B, Wiley JF | British journal of health psychology | 37437963 | Br J Health Psychol | 2023 Nov |
| The role of family history of Cancer in Oral Cavity Cancer. | Fantozzi PJ, Bavarian R, Tamayo I, Bind MA, Woo SB, Villa A | Head & face medicine | 34809651 | Head Face Med | 2021 Nov 22 |
| An educational intervention on HPV knowledge and comfortability discussing vaccination among oral health care professionals of the American Indian and Alaskan Native population. | Salous MH, Bind MA, Granger L, Johnson LB, Welch K, Villa A | Human vaccines & immunotherapeutics | 32401662 | Hum Vaccin Immunother | 2020 Dec 1 |
| Comparing apples to apples: an environmental criminology analysis of the effects of heat and rain on violent crimes in Boston. | Sommer AJ, Lee M, Bind MC | Palgrave communications | 31360534 | Palgrave Commun | 2018 |
| Estimating Causal Effects of Local Air Pollution on Daily Deaths: Effect of Low Levels. | Schwartz J, Bind MA, Koutrakis P | Environmental health perspectives | 27203595 | Environ Health Perspect | 2017 Jan |
| Bronchial cell epigenetic aging in a human experimental study of short-term diesel and ozone exposures. | Nwanaji-Enwerem JC, Bozack AK, Ward-Caviness C, Diaz-Sanchez D, Devlin RB, Bind MC, Cardenas A | Environmental epigenetics | 39416749 | Environ Epigenet | 2024 |
| The impact of outdoor air pollution on COVID-19: a review of evidence from in vitro, animal, and human studies. | Bourdrel T, Annesi-Maesano I, Alahmad B, Maesano CN, Bind MA | European respiratory review : an official journal of the European Respiratory Society | 33568525 | Eur Respir Rev | 2021 Mar 31 |
| Cardiovascular effects of air pollution. | Bourdrel T, Bind MA, Béjot Y, Morel O, Argacha JF | Archives of cardiovascular diseases | 28735838 | Arch Cardiovasc Dis | 2017 Nov |
| Bridging observational studies and randomized experiments by embedding the former in the latter. | Bind MC, Rubin DB | Statistical methods in medical research | 29187059 | Stat Methods Med Res | 2019 Jul |
| Editor's Highlight: Modifying Role of Endothelial Function Gene Variants on the Association of Long-Term PM2.5 Exposure With Blood DNA Methylation Age: The VA Normative Aging Study. | Nwanaji-Enwerem JC, Bind MA, Dai L, Oulhote Y, Colicino E, Di Q, Just AC, Hou L, Vokonas P, Coull BA, Weisskopf MG, Baccarelli AA, Schwartz JD | Toxicological sciences : an official journal of the Society of Toxicology | 28486674 | Toxicol Sci | 2017 Jul 1 |
| County-level radon exposure and all-cause mortality risk among Medicare beneficiaries. | Yitshak-Sade M, Blomberg AJ, Zanobetti A, Schwartz JD, Coull BA, Kloog I, Dominici F, Koutrakis P | Environment international | 31200153 | Environ Int | 2019 Sep |
| The Role of Ambient Particle Radioactivity in Inflammation and Endothelial Function in an Elderly Cohort. | Blomberg AJ, Nyhan MM, Bind MA, Vokonas P, Coull BA, Schwartz J, Koutrakis P | Epidemiology (Cambridge, Mass.) | 32282436 | Epidemiology | 2020 Jul |
| Joint and independent neurotoxic effects of early life exposures to a chemical mixture: A multi-pollutant approach combining ensemble learning and g-computation. | Oulhote Y, Coull B, Bind MA, Debes F, Nielsen F, Tamayo I, Weihe P, Grandjean P | Environmental epidemiology (Philadelphia, Pa.) | 32051926 | Environ Epidemiol | 2019 Oct |
| When possible, report a Fisher-exact P value and display its underlying null randomization distribution. | Bind MC, Rubin DB | Proceedings of the National Academy of Sciences of the United States of America | 32703808 | Proc Natl Acad Sci U S A | 2020 Aug 11 |
| A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota. | Sommer AJ, Peters A, Rommel M, Cyrys J, Grallert H, Haller D, Müller CL, Bind MC | PLoS computational biology | 35533202 | PLoS Comput Biol | 2022 May |
| Assessing an Internet-Delivered, Emotion-Focused Intervention Compared With a Healthy Lifestyle Active Control Intervention in Improving Mental Health in Cancer Survivors: Protocol for a Randomized Controlled Trial. | Smith IS, Wallace R, Wellecke C, Bind MA, Weihs KL, Bei B, Wiley JF | JMIR research protocols | 35896021 | JMIR Res Protoc | 2022 Jul 27 |
| Targeted next-generation sequencing of pediatric neuro-oncology patients improves diagnosis, identifies pathogenic germline mutations, and directs targeted therapy. | Kline CN, Joseph NM, Grenert JP, van Ziffle J, Talevich E, Onodera C, Aboian M, Cha S, Raleigh DR, Braunstein S, Torkildson J, Samuel D, Bloomer M, Campomanes AGA, Banerjee A, Butowski N, Raffel C, Tihan T, Bollen AW, Phillips JJ, Korn WM, Yeh I, Bastian BC, Gupta N, Mueller S, Perry A, Nicolaides T, Solomon DA | Neuro-oncology | 28453743 | Neuro Oncol | 2017 May 1 |
| Genetic confirmation that ependymoma can arise as part of multiple endocrine neoplasia type 1 (MEN1) syndrome. | Cuevas-Ocampo AK, Bollen AW, Goode B, Pajtler KW, Chavez L, Sharma T, Dai SC, McDermott M, Perry A, Korshunov A, Solomon DA | Acta neuropathologica | 28238068 | Acta Neuropathol | 2017 Apr |
| Pediatric bithalamic gliomas have a distinct epigenetic signature and frequent EGFR exon 20 insertions resulting in potential sensitivity to targeted kinase inhibition. | Mondal G, Lee JC, Ravindranathan A, Villanueva-Meyer JE, Tran QT, Allen SJ, Barreto J, Gupta R, Doo P, Van Ziffle J, Onodera C, Devine P, Grenert JP, Samuel D, Li R, Metrock LK, Jin LW, Antony R, Alashari M, Cheshier S, Whipple NS, Bruggers C, Raffel C, Gupta N, Kline CN, Reddy A, Banerjee A, Hall MD, Mehta MP, Khatib Z, Maher OM, Brathwaite C, Pekmezci M, Phillips JJ, Bollen AW, Tihan T, Lucas JT Jr, Broniscer A, Berger MS, Perry A, Orr BA, Solomon DA | Acta neuropathologica | 32303840 | Acta Neuropathol | 2020 Jun |
| Recurrent non-canonical histone H3 mutations in spinal cord diffuse gliomas. | Sloan EA, Cooney T, Oberheim Bush NA, Buerki R, Taylor J, Clarke JL, Torkildson J, Kline C, Reddy A, Mueller S, Banerjee A, Butowski N, Chang S, Mummaneni PV, Chou D, Tan L, Theodosopoulos P, McDermott M, Berger M, Raffel C, Gupta N, Sun PP, Li Y, Shah V, Cha S, Braunstein S, Raleigh DR, Samuel D, Scharnhorst D, Fata C, Guo H, Moes G, Kim JYH, Koschmann C, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Pekmezci M, Phillips JJ, Tihan T, Bollen AW, Perry A, Solomon DA | Acta neuropathologica | 31515627 | Acta Neuropathol | 2019 Nov |
| Clinicopathologic and molecular features of intracranial desmoplastic small round cell tumors. | Lee JC, Villanueva-Meyer JE, Ferris SP, Cham EM, Zucker J, Cooney T, Gilani A, Kleinschmidt-DeMasters BK, Trembath D, Mafra M, Chiang J, Ellison DW, Cho SJ, Horvai AE, Van Ziffle J, Onodera C, Devine P, Grenert JP, de Voijs CMA, van Blokland WTM, de Leng WWJ, Ploegmakers MJ, Flucke U, Pekmezci M, Bollen AW, Tihan T, Koelsche C, von Deimling A, Wesseling P, Solomon DA, Perry A | Brain pathology (Zurich, Switzerland) | 31837177 | Brain Pathol | 2020 Mar |
| The genetic landscape of ganglioglioma. | Pekmezci M, Villanueva-Meyer JE, Goode B, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Chamyan G, Maher OM, Khatib Z, Kleinschmidt-DeMasters BK, Samuel D, Mueller S, Banerjee A, Clarke JL, Cooney T, Torkildson J, Gupta N, Theodosopoulos P, Chang EF, Berger M, Bollen AW, Perry A, Tihan T, Solomon DA | Acta neuropathologica communications | 29880043 | Acta Neuropathol Commun | 2018 Jun 7 |
| Multimodal molecular analysis of astroblastoma enables reclassification of most cases into more specific molecular entities. | Wood MD, Tihan T, Perry A, Chacko G, Turner C, Pu C, Payne C, Yu A, Bannykh SI, Solomon DA | Brain pathology (Zurich, Switzerland) | 28960623 | Brain Pathol | 2018 Mar |
| Imaging Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3 K27M Mutation. | Aboian MS, Solomon DA, Felton E, Mabray MC, Villanueva-Meyer JE, Mueller S, Cha S | AJNR. American journal of neuroradiology | 28183840 | AJNR Am J Neuroradiol | 2017 Apr |
| Exploiting molecular biology for diagnosis and targeted management of pediatric low-grade gliomas. | Garcia MA, Solomon DA, Haas-Kogan DA | Future oncology (London, England) | 27072750 | Future Oncol | 2016 Jun |
| Intracranial mesenchymal tumor with FET-CREB fusion-A unifying diagnosis for the spectrum of intracranial myxoid mesenchymal tumors and angiomatoid fibrous histiocytoma-like neoplasms. | Sloan EA, Chiang J, Villanueva-Meyer JE, Alexandrescu S, Eschbacher JM, Wang W, Mafra M, Ud Din N, Carr-Boyd E, Watson M, Punsoni M, Oviedo A, Gilani A, Kleinschmidt-DeMasters BK, Coss DJ, Lopes MB, Raffel C, Berger MS, Chang SM, Reddy A, Ramani B, Ferris SP, Lee JC, Hofmann JW, Cho SJ, Horvai AE, Pekmezci M, Tihan T, Bollen AW, Rodriguez FJ, Ellison DW, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 33141488 | Brain Pathol | 2021 Jul |
| Low-grade glioneuronal tumors with FGFR2 fusion resolve into a single epigenetic group corresponding to 'Polymorphous low-grade neuroepithelial tumor of the young'. | Gupta R, Lucas CG, Wu J, Barreto J, Shah K, Simon IB, Casavilca-Zambrano S, Brathwaite C, Zhou H, Caccamo D, Gilani A, Kleinschmidt-DeMasters BK, Lee JC, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 34322742 | Acta Neuropathol | 2021 Sep |
| Molecular profiling identifies at least 3 distinct types of posttransplant lymphoproliferative disorder involving the CNS. | Guney E, Lucas CG, Singh K, Pekmezci M, Fernandez-Pol S, Mirchia K, Toland A, Vogel H, Bannykh S, Schafernak KT, Alexandrescu S, Mobley BC, Powell S, Davidson CJ, Neltner J, Boué DR, Hattab E, Ferris SP, Ohgami RS, Rubenstein JL, Bollen AW, Tihan T, Perry A, Solomon DA, Wen KW | Blood advances | 36897259 | Blood Adv | 2023 Jul 11 |
| Complete durable response of a pediatric anaplastic oligodendroglioma to temozolomide alone: Case report and review of literature. | Sorge C, Li R, Singh S, Reddy AT, Solomon DA, Perry A, Friedman GK | Pediatric blood & cancer | 28696020 | Pediatr Blood Cancer | 2017 Dec |
| The genetic landscape of anaplastic pleomorphic xanthoastrocytoma. | Phillips JJ, Gong H, Chen K, Joseph NM, van Ziffle J, Bastian BC, Grenert JP, Kline CN, Mueller S, Banerjee A, Nicolaides T, Gupta N, Berger MS, Lee HS, Pekmezci M, Tihan T, Bollen AW, Perry A, Shieh JTC, Solomon DA | Brain pathology (Zurich, Switzerland) | 30051528 | Brain Pathol | 2019 Jan |
| Multinodular and vacuolating neuronal tumor of the cerebrum is a clonal neoplasm defined by genetic alterations that activate the MAP kinase signaling pathway. | Pekmezci M, Stevers M, Phillips JJ, Van Ziffle J, Bastian BC, Tsankova NM, Kleinschmidt-DeMasters BK, Rosenblum MK, Tihan T, Perry A, Solomon DA | Acta neuropathologica | 29428973 | Acta Neuropathol | 2018 Mar |
| Diffuse non-midline glioma with H3F3A K27M mutation: a prognostic and treatment dilemma. | López G, Oberheim Bush NA, Berger MS, Perry A, Solomon DA | Acta neuropathologica communications | 28506301 | Acta Neuropathol Commun | 2017 May 15 |
| Recurrent KBTBD4 small in-frame insertions and absence of DROSHA deletion or DICER1 mutation differentiate pineal parenchymal tumor of intermediate differentiation (PPTID) from pineoblastoma. | Lee JC, Mazor T, Lao R, Wan E, Diallo AB, Hill NS, Thangaraj N, Wendelsdorf K, Samuel D, Kline CN, Banerjee A, Auguste K, Raffel C, Gupta N, Berger M, Raleigh DR, Shai A, Phillips JJ, Bollen AW, Tihan T, Perry A, Costello J, Solomon DA | Acta neuropathologica | 30877433 | Acta Neuropathol | 2019 May |
| Intracranial mesenchymal tumors with FET-CREB fusion are composed of at least two epigenetic subgroups distinct from meningioma and extracranial sarcomas. | Sloan EA, Gupta R, Koelsche C, Chiang J, Villanueva-Meyer JE, Alexandrescu S, Eschbacher JM, Wang W, Mafra M, Ud Din N, Carr-Boyd E, Watson M, Punsoni M, Oviedo A, Gilani A, Kleinschmidt-DeMasters BK, Coss DJ, Lopes MB, Reddy A, Mueller S, Cho SJ, Horvai AE, Lee JC, Pekmezci M, Tihan T, Bollen AW, Rodriguez FJ, Ellison DW, Perry A, von Deimling A, Chang SM, Berger MS, Solomon DA | Brain pathology (Zurich, Switzerland) | 34821426 | Brain Pathol | 2022 Jul |
| Targeted Next-Generation Sequencing Reveals Divergent Clonal Evolution in Components of Composite Pleomorphic Xanthoastrocytoma-Ganglioglioma. | Lucas CG, Davidson CJ, Alashari M, Putnam AR, Whipple NS, Bruggers CS, Mendez JS, Cheshier SH, Walker JB, Ramani B, Cadwell CR, Sullivan DV, Lu R, Mirchia K, Van Ziffle J, Devine P, Goldschmidt E, Hervey-Jumper SL, Gupta N, Oberheim Bush NA, Raleigh DR, Bollen A, Tihan T, Pekmezci M, Solomon DA, Phillips JJ, Perry A | Journal of neuropathology and experimental neurology | 35703914 | J Neuropathol Exp Neurol | 2022 Jul 19 |
| Deconvoluting Mechanisms of Acquired Resistance to RAF Inhibitors in BRAF(V600E)-Mutant Human Glioma. | Schreck KC, Morin A, Zhao G, Allen AN, Flannery P, Glantz M, Green AL, Jones C, Jones KL, Kilburn LB, Nazemi KJ, Samuel D, Sanford B, Solomon DA, Wang J, Pratilas CA, Nicolaides T, Mulcahy Levy JM | Clinical cancer research : an official journal of the American Association for Cancer Research | 34433654 | Clin Cancer Res | 2021 Nov 15 |
| Loss of H3K27 trimethylation by immunohistochemistry is frequent in oligodendroglioma, IDH-mutant and 1p/19q-codeleted, but is neither a sensitive nor a specific marker. | Pekmezci M, Phillips JJ, Dirilenoglu F, Atasever-Rezanko T, Tihan T, Solomon D, Bollen A, Perry A | Acta neuropathologica | 31912209 | Acta Neuropathol | 2020 Mar |
| Comprehensive analysis of diverse low-grade neuroepithelial tumors with FGFR1 alterations reveals a distinct molecular signature of rosette-forming glioneuronal tumor. | Lucas CG, Gupta R, Doo P, Lee JC, Cadwell CR, Ramani B, Hofmann JW, Sloan EA, Kleinschmidt-DeMasters BK, Lee HS, Wood MD, Grafe M, Born D, Vogel H, Salamat S, Puccetti D, Scharnhorst D, Samuel D, Cooney T, Cham E, Jin LW, Khatib Z, Maher O, Chamyan G, Brathwaite C, Bannykh S, Mueller S, Kline CN, Banerjee A, Reddy A, Taylor JW, Clarke JL, Oberheim Bush NA, Butowski N, Gupta N, Auguste KI, Sun PP, Roland JL, Raffel C, Aghi MK, Theodosopoulos P, Chang E, Hervey-Jumper S, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Chang S, Berger MS, Perry A, Solomon DA | Acta neuropathologica communications | 32859279 | Acta Neuropathol Commun | 2020 Aug 28 |
| The immunohistochemical, DNA methylation, and chromosomal copy number profile of cauda equina paraganglioma is distinct from extra-spinal paraganglioma. | Ramani B, Gupta R, Wu J, Barreto J, Bollen AW, Tihan T, Mummaneni PV, Ames C, Clark A, Oberheim Bush NA, Butowski N, Phillips D, King BE, Bator SM, Treynor EC, Zherebitskiy V, Quinn PS, Walker JB, Pekmezci M, Sullivan DV, Hofmann JW, Sloan EA, M Chang S, Berger MS, Solomon DA, Perry A | Acta neuropathologica | 32892244 | Acta Neuropathol | 2020 Dec |
| Myxoid glioneuronal tumor, PDGFRA p.K385-mutant: clinical, radiologic, and histopathologic features. | Lucas CG, Villanueva-Meyer JE, Whipple N, Oberheim Bush NA, Cooney T, Chang S, McDermott M, Berger M, Cham E, Sun PP, Putnam A, Zhou H, Bollo R, Cheshier S, Poppe MM, Fung KM, Sung S, Glenn C, Fan X, Bannykh S, Hu J, Danielpour M, Li R, Alva E, Johnston J, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Pekmezci M, Tihan T, Bollen AW, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31609499 | Brain Pathol | 2020 May |
| Gliomas arising in the setting of Li-Fraumeni syndrome stratify into two molecular subgroups with divergent clinicopathologic features. | Sloan EA, Hilz S, Gupta R, Cadwell C, Ramani B, Hofmann J, Kline CN, Banerjee A, Reddy A, Oberheim Bush NA, Chang S, Braunstein S, Chang EF, Raffel C, Gupta N, Sun PP, Kim JYH, Moes G, Alva E, Li R, Bruggers CS, Alashari M, Wetmore C, Garg S, Dishop M, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Phillips JJ, Pekmezci M, Tihan T, Bollen AW, Berger MS, Costello JF, Perry A, Solomon DA | Acta neuropathologica | 32157385 | Acta Neuropathol | 2020 May |
| Next-Generation Sequencing of Retinoblastoma Identifies Pathogenic Alterations beyond RB1 Inactivation That Correlate with Aggressive Histopathologic Features. | Afshar AR, Pekmezci M, Bloomer MM, Cadenas NJ, Stevers M, Banerjee A, Roy R, Olshen AB, Van Ziffle J, Onodera C, Devine WP, Grenert JP, Bastian BC, Solomon DA, Damato BE | Ophthalmology | 32139107 | Ophthalmology | 2020 Jun |
| Clinical, radiologic, and genetic characteristics of histone H3 K27M-mutant diffuse midline gliomas in adults. | Schulte JD, Buerki RA, Lapointe S, Molinaro AM, Zhang Y, Villanueva-Meyer JE, Perry A, Phillips JJ, Tihan T, Bollen AW, Pekmezci M, Butowski N, Oberheim Bush NA, Taylor JW, Chang SM, Theodosopoulos P, Aghi MK, Hervey-Jumper SL, Berger MS, Solomon DA, Clarke JL | Neuro-oncology advances | 33354667 | Neurooncol Adv | 2020 Jan-Dec |
| A review of recently described genetic alterations in central nervous system tumors. | Lucas CG, Solomon DA, Perry A | Human pathology | 31678207 | Hum Pathol | 2020 Feb |
| Iris and Ciliary Body Melanocytomas Are Defined by Solitary GNAQ Mutation Without Additional Oncogenic Alterations. | Solomon DA, Ramani B, Eiger-Moscovich M, Milman T, Uludag G, Crawford JB, Phan I, Char DH, Shields CL, Eagle RC Jr, Bastian BC, Bloomer MM, Pekmezci M | Ophthalmology | 35835335 | Ophthalmology | 2022 Dec |
| Tumor DNA requirements for accurate epigenetic-based classification of CNS neoplasia. | Wu J, Gupta R, Barreto J, Doo P, Joseph NM, Lee JC, Perry A, Chang SM, Berger MS, Solomon DA | Neuro-oncology | 34351421 | Neuro Oncol | 2021 Oct 1 |
| Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components. | Heskett MB, Sanborn JZ, Boniface C, Goode B, Chapman J, Garg K, Rabban JT, Zaloudek C, Benz SC, Spellman PT, Solomon DA, Cho RJ | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 31911616 | Mod Pathol | 2020 Jun |
| Primary intracranial sarcomas with DICER1 mutation often contain prominent eosinophilic cytoplasmic globules and can occur in the setting of neurofibromatosis type 1. | Lee JC, Villanueva-Meyer JE, Ferris SP, Sloan EA, Hofmann JW, Hattab EM, Williams BJ, Guo H, Torkildson J, Florez A, Van Ziffle J, Onodera C, Grenert JP, Cho SJ, Horvai AE, Jones DTW, Pfister SM, Koelsche C, von Deimling A, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 30649606 | Acta Neuropathol | 2019 Mar |
| Well-differentiated papillary mesothelioma of the peritoneum is genetically defined by mutually exclusive mutations in TRAF7 and CDC42. | Stevers M, Rabban JT, Garg K, Van Ziffle J, Onodera C, Grenert JP, Yeh I, Bastian BC, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 30171198 | Mod Pathol | 2019 Jan |
| Adenomatoid tumors of the male and female genital tract are defined by TRAF7 mutations that drive aberrant NF-kB pathway activation. | Goode B, Joseph NM, Stevers M, Van Ziffle J, Onodera C, Talevich E, Grenert JP, Yeh I, Bastian BC, Phillips JJ, Garg K, Rabban JT, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 29148537 | Mod Pathol | 2018 Apr |
| A genetically distinct pediatric subtype of primary CNS large B-cell lymphoma is associated with favorable clinical outcome. | Güney E, Lucas CG, Qi Z, Yu J, Zhang R, Ohgami RS, Rubenstein JL, Boué DR, Schafernak K, Wertheim GB, Dahiya S, Giulino-Roth L, Attarbaschi A, Barth MJ, Kothari S, Abla O, Cohen AL, Mendez JS, Bollen A, Perry A, Tihan T, Pekmezci M, Solomon DA, Wen KW | Blood advances | 35157770 | Blood Adv | 2022 May 24 |
| Loss of p16 expression is a sensitive marker of CDKN2A homozygous deletion in malignant meningiomas. | Tang V, Lu R, Mirchia K, Van Ziffle J, Devine P, Lee J, Phillips JJ, Perry A, Raleigh DR, Lucas CG, Solomon DA | Acta neuropathologica | 36723772 | Acta Neuropathol | 2023 Apr |
| Activating NTRK2 and ALK receptor tyrosine kinase fusions extend the molecular spectrum of pleomorphic xanthoastrocytomas of early childhood: a diagnostic overlap with infant-type hemispheric glioma. | Lucas CG, Abdullaev Z, Bruggers CS, Mirchia K, Whipple NS, Alashari MM, Lowichik A, Cheshier S, Phillips JJ, Devine P, Solomon DA, Quezado M, Aldape KD, Perry A | Acta neuropathologica | 34910220 | Acta Neuropathol | 2022 Feb |
| Genomic profiling of malignant peritoneal mesothelioma reveals recurrent alterations in epigenetic regulatory genes BAP1, SETD2, and DDX3X. | Joseph NM, Chen YY, Nasr A, Yeh I, Talevich E, Onodera C, Bastian BC, Rabban JT, Garg K, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 27813512 | Mod Pathol | 2017 Feb |
| Histopathologic review of pineal parenchymal tumors identifies novel morphologic subtypes and prognostic factors for outcome. | Raleigh DR, Solomon DA, Lloyd SA, Lazar A, Garcia MA, Sneed PK, Clarke JL, McDermott MW, Berger MS, Tihan T, Haas-Kogan DA | Neuro-oncology | 27282397 | Neuro Oncol | 2017 Jan |
| The role of histone modifications and telomere alterations in the pathogenesis of diffuse gliomas in adults and children. | Lee J, Solomon DA, Tihan T | Journal of neuro-oncology | 28064387 | J Neurooncol | 2017 Mar |
| Activating NRF1-BRAF and ATG7-RAF1 fusions in anaplastic pleomorphic xanthoastrocytoma without BRAF p.V600E mutation. | Phillips JJ, Gong H, Chen K, Joseph NM, van Ziffle J, Jin LW, Bastian BC, Bollen AW, Perry A, Nicolaides T, Solomon DA, Shieh JT | Acta neuropathologica | 27624885 | Acta Neuropathol | 2016 Nov |
| Oligodendrogliomas, IDH-mutant and 1p/19q-codeleted, arising during teenage years often lack TERT promoter mutation that is typical of their adult counterparts. | Lee J, Putnam AR, Chesier SH, Banerjee A, Raffel C, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Perry A, Solomon DA | Acta neuropathologica communications | 30231927 | Acta Neuropathol Commun | 2018 Sep 19 |
| Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma. | North JP, Golovato J, Vaske CJ, Sanborn JZ, Nguyen A, Wu W, Goode B, Stevers M, McMullen K, Perez White BE, Collisson EA, Bloomer M, Solomon DA, Benz SC, Cho RJ | Nature communications | 29760388 | Nat Commun | 2018 May 14 |
| ALK-positive histiocytosis with KIF5B-ALK fusion in the central nervous system. | Lucas CG, Gilani A, Solomon DA, Liang X, Maher OM, Chamyan G, Kleinschmidt-Demasters BK, Perry A | Acta neuropathologica | 31119374 | Acta Neuropathol | 2019 Aug |
| A requirement for STAG2 in replication fork progression creates a targetable synthetic lethality in cohesin-mutant cancers. | Mondal G, Stevers M, Goode B, Ashworth A, Solomon DA | Nature communications | 30975996 | Nat Commun | 2019 Apr 11 |
| Diffuse Midline Gliomas with Histone H3-K27M Mutation: A Series of 47 Cases Assessing the Spectrum of Morphologic Variation and Associated Genetic Alterations. | Solomon DA, Wood MD, Tihan T, Bollen AW, Gupta N, Phillips JJ, Perry A | Brain pathology (Zurich, Switzerland) | 26517431 | Brain Pathol | 2016 Sep |
| STAG2 Is a Biomarker for Prediction of Recurrence and Progression in Papillary Non-Muscle-Invasive Bladder Cancer. | Lelo A, Prip F, Harris BT, Solomon D, Berry DL, Chaldekas K, Kumar A, Simko J, Jensen JB, Bhattacharyya P, Mannion C, Kim JS, Philips G, Dyrskjøt L, Waldman T | Clinical cancer research : an official journal of the American Association for Cancer Research | 29954776 | Clin Cancer Res | 2018 Sep 1 |
| Myxoid glioneuronal tumor of the septum pellucidum and lateral ventricle is defined by a recurrent PDGFRA p.K385 mutation and DNT-like methylation profile. | Solomon DA, Korshunov A, Sill M, Jones DTW, Kool M, Pfister SM, Fan X, Bannykh S, Hu J, Danielpour M, Li R, Johnston J, Cham E, Cooney T, Sun PP, Oberheim Bush NA, McDermott M, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Villanueva-Meyer JE, Pekmezci M, Bollen AW, Perry A | Acta neuropathologica | 30006677 | Acta Neuropathol | 2018 Aug |
| The genetic landscape of gliomas arising after therapeutic radiation. | López GY, Van Ziffle J, Onodera C, Grenert JP, Yeh I, Bastian BC, Clarke J, Oberheim Bush NA, Taylor J, Chang S, Butowski N, Banerjee A, Mueller S, Kline C, Torkildson J, Samuel D, Siongco A, Raffel C, Gupta N, Kunwar S, Mummaneni P, Aghi M, Theodosopoulos P, Berger M, Phillips JJ, Pekmezci M, Tihan T, Bollen AW, Perry A, Solomon DA | Acta neuropathologica | 30196423 | Acta Neuropathol | 2019 Jan |
| Deep sequencing of WNT-activated medulloblastomas reveals secondary SHH pathway activation. | Iorgulescu JB, Van Ziffle J, Stevers M, Grenert JP, Bastian BC, Chavez L, Stichel D, Buchhalter I, Samuel D, Nicolaides T, Banerjee A, Mueller S, Gupta N, Tihan T, Bollen AW, Northcott PA, Kool M, Pfister S, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 29435664 | Acta Neuropathol | 2018 Apr |
| A recurrent kinase domain mutation in PRKCA defines chordoid glioma of the third ventricle. | Goode B, Mondal G, Hyun M, Ruiz DG, Lin YH, Van Ziffle J, Joseph NM, Onodera C, Talevich E, Grenert JP, Hewedi IH, Snuderl M, Brat DJ, Kleinschmidt-DeMasters BK, Rodriguez FJ, Louis DN, Yong WH, Lopes MB, Rosenblum MK, Butowski N, Tihan T, Bollen AW, Phillips JJ, Wiita AP, Yeh I, Jacobson MP, Bastian BC, Perry A, Solomon DA | Nature communications | 29476136 | Nat Commun | 2018 Feb 23 |
| Genomic analysis of the origins and evolution of multicentric diffuse lower-grade gliomas. | Hayes J, Yu Y, Jalbert LE, Mazor T, Jones LE, Wood MD, Walsh KM, Bengtsson H, Hong C, Oberndorfer S, Roetzer T, Smirnov IV, Clarke JL, Aghi MK, Chang SM, Nelson SJ, Woehrer A, Phillips JJ, Solomon DA, Costello JF | Neuro-oncology | 29077933 | Neuro Oncol | 2018 Apr 9 |
| Familial melanoma-astrocytoma syndrome: synchronous diffuse astrocytoma and pleomorphic xanthoastrocytoma in a patient with germline CDKN2A/B deletion and a significant family history. | Chan AK, Han SJ, Choy W, Beleford D, Aghi MK, Berger MS, Shieh JT, Bollen AW, Perry A, Phillips JJ, Butowski N, Solomon DA | Clinical neuropathology | 28699883 | Clin Neuropathol | 2017 Sep/Oct |
| Angiocentric glioma with MYB-QKI fusion located in the brainstem, rather than cerebral cortex. | Chan E, Bollen AW, Sirohi D, Van Ziffle J, Grenert JP, Kline CN, Tihan T, Perry A, Gupta N, Solomon DA | Acta neuropathologica | 28776091 | Acta Neuropathol | 2017 Oct |
| Diffuse midline gliomas with subclonal H3F3A K27M mutation and mosaic H3.3 K27M mutant protein expression. | Lopez GY, Oberheim Bush NA, Phillips JJ, Bouffard JP, Moshel YA, Jaeckle K, Kleinschmidt-DeMasters BK, Rosenblum MK, Perry A, Solomon DA | Acta neuropathologica | 29063183 | Acta Neuropathol | 2017 Dec |
| Diffusion Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3-K27M Mutation Using Apparent Diffusion Coefficient Histogram Analysis. | Aboian MS, Tong E, Solomon DA, Kline C, Gautam A, Vardapetyan A, Tamrazi B, Li Y, Jordan CD, Felton E, Weinberg B, Braunstein S, Mueller S, Cha S | AJNR. American journal of neuroradiology | 31694820 | AJNR Am J Neuroradiol | 2019 Nov |
| STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection. | Ding S, Diep J, Feng N, Ren L, Li B, Ooi YS, Wang X, Brulois KF, Yasukawa LL, Li X, Kuo CJ, Solomon DA, Carette JE, Greenberg HB | Nature communications | 29662124 | Nat Commun | 2018 Apr 16 |
| Loss of ZNF750 in ocular and cutaneous sebaceous carcinoma. | North JP, Solomon DA, Golovato J, Bloomer M, Benz SC, Cho RJ | Journal of cutaneous pathology | 31148199 | J Cutan Pathol | 2019 Oct |
| An update on the central nervous system manifestations of familial tumor predisposition syndromes. | Solomon DA | Acta neuropathologica | 32016553 | Acta Neuropathol | 2020 Apr |
| Inactivating MUTYH germline mutations in pediatric patients with high-grade midline gliomas. | Kline CN, Joseph NM, Grenert JP, van Ziffle J, Yeh I, Bastian BC, Mueller S, Solomon DA | Neuro-oncology | 26902849 | Neuro Oncol | 2016 May |
| IDH1 mutation can be present in diffuse astrocytomas and giant cell glioblastomas of young children under 10 years of age. | Ferris SP, Goode B, Joseph NM, Kline CN, Samuel D, Gupta N, Bollen A, Perry A, Mueller S, Solomon DA | Acta neuropathologica | 27161253 | Acta Neuropathol | 2016 Jul |
| High-grade neuroepithelial tumor with BCOR exon 15 internal tandem duplication-a comprehensive clinical, radiographic, pathologic, and genomic analysis. | Ferris SP, Velazquez Vega J, Aboian M, Lee JC, Van Ziffle J, Onodera C, Grenert JP, Saunders T, Chen YY, Banerjee A, Kline CN, Gupta N, Raffel C, Samuel D, Ruiz-Diaz I, Magaki S, Wilson D, Neltner J, Al-Hajri Z, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Schniederjan M, Cha S, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31104347 | Brain Pathol | 2020 Jan |
| Conserved features of TERT promoter duplications reveal an activation mechanism that mimics hotspot mutations in cancer. | Barger CJ, Suwala AK, Soczek KM, Wang AS, Kim MY, Hong C, Doudna JA, Chang SM, Phillips JJ, Solomon DA, Costello JF | Nature communications | 36114166 | Nat Commun | 2022 Sep 16 |
| Intratumor and informatic heterogeneity influence meningioma molecular classification. | Vasudevan HN, Choudhury A, Hilz S, Villanueva-Meyer JE, Chen WC, Lucas CG, Braunstein SE, Oberheim Bush NA, Butowski N, Pekmezci M, McDermott MW, Perry A, Solomon DA, Magill ST, Raleigh DR | Acta neuropathologica | 35759011 | Acta Neuropathol | 2022 Sep |
| Diffuse hemispheric glioma, H3 G34-mutant: Genomic landscape of a new tumor entity and prospects for targeted therapy. | Lucas CG, Mueller S, Reddy A, Taylor JW, Oberheim Bush NA, Clarke JL, Chang SM, Gupta N, Berger MS, Perry A, Phillips JJ, Solomon DA | Neuro-oncology | 34519829 | Neuro Oncol | 2021 Nov 2 |
| Genetic and epigenetic characterization of posterior pituitary tumors. | Schmid S, Solomon DA, Perez E, Thieme A, Kleinschmidt-DeMasters BK, Giannini C, Reinhardt A, Asa SL, Mete O, Stichel D, Siewert C, Dittmayer C, Hasselblatt M, Paulus W, Nagel C, Harter PN, Schittenhelm J, Honegger J, Rushing E, Coras R, Pfister SM, Buslei R, Koch A, Perry A, Jones DTW, von Deimling A, Capper D, Lopes MB | Acta neuropathologica | 34661724 | Acta Neuropathol | 2021 Dec |
| EWSR1-BEND2 fusion defines an epigenetically distinct subtype of astroblastoma. | Lucas CG, Gupta R, Wu J, Shah K, Ravindranathan A, Barreto J, Gener M, Ginn KF, Prall OWJ, Xu H, Kee D, Ko HS, Yaqoob N, Zia N, Florez A, Cha S, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 34825267 | Acta Neuropathol | 2022 Jan |
| Multiplatform molecular analyses refine classification of gliomas arising in patients with neurofibromatosis type 1. | Lucas CG, Sloan EA, Gupta R, Wu J, Pratt D, Vasudevan HN, Ravindranathan A, Barreto J, Williams EA, Shai A, Whipple NS, Bruggers CS, Maher O, Nabors B, Rodriguez M, Samuel D, Brown M, Carmichael J, Lu R, Mirchia K, Sullivan DV, Pekmezci M, Tihan T, Bollen AW, Perry A, Banerjee A, Mueller S, Gupta N, Hervey-Jumper SL, Oberheim Bush NA, Daras M, Taylor JW, Butowski NA, de Groot J, Clarke JL, Raleigh DR, Costello JF, Phillips JJ, Reddy AT, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 35945463 | Acta Neuropathol | 2022 Oct |
| Structural Basis for the Activation of IKK1/α. | Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G | Cell reports | 27851956 | Cell Rep | 2016 Nov 15 |
| Evaluating Local and Directional Resolution of Cryo-EM Density Maps. | Aiyer S, Zhang C, Baldwin PR, Lyumkis D | Methods in molecular biology (Clifton, N.J.) | 33368004 | Methods Mol Biol | 2021 |
| Addressing preferred specimen orientation in single-particle cryo-EM through tilting. | Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D | Nature methods | 28671674 | Nat Methods | 2017 Aug |
| Modular Assembly of the Bacterial Large Ribosomal Subunit. | Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR | Cell | 27912064 | Cell | 2016 Dec 1 |
| Challenges and opportunities in cryo-EM single-particle analysis. | Lyumkis D | The Journal of biological chemistry | 30804214 | J Biol Chem | 2019 Mar 29 |
| Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification. | Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D | Ultramicroscopy | 30528101 | Ultramicroscopy | 2019 Aug |
| Tools for visualizing and analyzing Fourier space sampling in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 32645314 | Prog Biophys Mol Biol | 2021 Mar |
| Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease. | Polley S, Lyumkis D, Horton NC | Structure (London, England : 1993) | 31447289 | Structure | 2019 Oct 1 |
| SrmB Rescues Trapped Ribosome Assembly Intermediates. | Rabuck-Gibbons JN, Popova AM, Greene EM, Cervantes CF, Lyumkis D, Williamson JR | Journal of molecular biology | 31877323 | J Mol Biol | 2020 Feb 14 |
| Non-uniformity of projection distributions attenuates resolution in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 31525386 | Prog Biophys Mol Biol | 2020 Jan |
| Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. | Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N | Cell | 31348888 | Cell | 2019 Jul 25 |
| Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant. | Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D | Nature communications | 30194371 | Nat Commun | 2018 Sep 7 |
| Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd. | Brugger C, Zhang C, Suhanovsky MM, Kim DD, Sinclair AN, Lyumkis D, Deaconescu AM | Nature communications | 32719356 | Nat Commun | 2020 Jul 27 |
| Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates. | Rabuck-Gibbons JN, Lyumkis D, Williamson JR | Structure (London, England : 1993) | 34990602 | Structure | 2022 Apr 7 |
| Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d. | Zhang C, Konermann S, Brideau NJ, Lotfy P, Wu X, Novick SJ, Strutzenberg T, Griffin PR, Hsu PD, Lyumkis D | Cell | 30241607 | Cell | 2018 Sep 20 |
| Establishment of hepatocellular carcinoma patient-derived xenografts from image-guided percutaneous biopsies. | Tischfield DJ, Ackerman D, Noji M, Chen JX, Johnson O, Perkons NR, Nadolski GJ, Hunt SJ, Soulen MC, Furth EE, Gade TP | Scientific reports | 31332214 | Sci Rep | 2019 Jul 22 |
| Angiographic Atlas of the Visceral Vascular Anatomy in Translational Rat Models. | Shi D, Kiefer RM, Nishiofuku H, Cortes A, Nadolski GJ, Hunt SJ, Avritscher R, Gade TPF | Journal of vascular and interventional radiology : JVIR | 31202678 | J Vasc Interv Radiol | 2019 Dec |
| Tissue metabolic profiling shows that saccharopine accumulates during renal ischemic-reperfusion injury, while kynurenine and itaconate accumulate in renal allograft rejection. | Beier UH, Hartung EA, Concors S, Hernandez PT, Wang Z, Perry C, Baur JA, Denburg MR, Hancock WW, Gade TP, Levine MH | Metabolomics : Official journal of the Metabolomic Society | 32367163 | Metabolomics | 2020 May 4 |
| Relative Initial Weight Is Associated with Improved Survival without Altering Tumor Latency in a Translational Rat Model of Diethylnitrosamine-Induced Hepatocellular Carcinoma and Transarterial Embolization. | Kiefer RM, Hunt SJ, Pulido S, Pickup S, Furth EE, Soulen MC, Nadolski GJ, Gade TP | Journal of vascular and interventional radiology : JVIR | 28495453 | J Vasc Interv Radiol | 2017 Jul |
| Radial Flow Perfusion Enables Real-Time Profiling of Cellular Metabolism at Low Oxygen Levels with Hyperpolarized (13)C NMR Spectroscopy. | Mancuso A, Pourfathi M, Kiefer RM, Noji MC, Siddiqui S, Profka E, Weber CN, Pantel A, Kadlecek SJ, Rizi R, Gade TPF | Metabolites | 34564392 | Metabolites | 2021 Aug 26 |
| Pharmacodynamics and pharmacokinetics of hyperpolarized [1-(13) C]-pyruvate in a translational oncologic model. | Perkons NR, Johnson O, Pilla G, Gade TPF | NMR in biomedicine | 33772910 | NMR Biomed | 2021 Jun |
| Computational pipeline for estimation of small-molecule T1 relaxation times. | Wildenberg JC, Perkons NR, Pilla G, Kadlecek S, Gade TPF | Journal of magnetic resonance (San Diego, Calif. : 1997) | 32339979 | J Magn Reson | 2020 May |
| Functional Genetic Screening Enables Theranostic Molecular Imaging in Cancer. | Perkons NR, Johnson O, Pilla G, Profka E, Mercadante M, Ackerman D, Gade TPF | Clinical cancer research : an official journal of the American Association for Cancer Research | 32499234 | Clin Cancer Res | 2020 Sep 1 |
| Hyperpolarized Metabolic Imaging Detects Latent Hepatocellular Carcinoma Domains Surviving Locoregional Therapy. | Perkons NR, Kiefer RM, Noji MC, Pourfathi M, Ackerman D, Siddiqui S, Tischfield D, Profka E, Johnson O, Pickup S, Mancuso A, Pantel A, Denburg MR, Nadolski GJ, Hunt SJ, Furth EE, Kadlecek S, Gade TPF | Hepatology (Baltimore, Md.) | 31553806 | Hepatology | 2020 Jul |
| Chromosomal instability accelerates the evolution of resistance to anti-cancer therapies. | Lukow DA, Sausville EL, Suri P, Chunduri NK, Wieland A, Leu J, Smith JC, Girish V, Kumar AA, Kendall J, Wang Z, Storchova Z, Sheltzer JM | Developmental cell | 34352222 | Dev Cell | 2021 Sep 13 |
| Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. | Hoffmann M, Hofmann-Winkler H, Smith JC, Krüger N, Sørensen LK, Søgaard OS, Hasselstrøm JB, Winkler M, Hempel T, Raich L, Olsson S, Yamazoe T, Yamatsuta K, Mizuno H, Ludwig S, Noé F, Sheltzer JM, Kjolby M, Pöhlmann S | bioRxiv : the preprint server for biology | 32793911 | bioRxiv | 2020 Aug 5 |
| A CRISPR Competition Assay to Identify Cancer Genetic Dependencies. | Girish V, Sheltzer JM | Bio-protocol | 33659353 | Bio Protoc | 2020 Jul 20 |
| CRISPR/Cas9 mutagenesis invalidates a putative cancer dependency targeted in on-going clinical trials. | Lin A, Giuliano CJ, Sayles NM, Sheltzer JM | eLife | 28337968 | Elife | 2017 Mar 24 |
| Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. | Vasudevan A, Baruah PS, Smith JC, Wang Z, Sayles NM, Andrews P, Kendall J, Leu J, Chunduri NK, Levy D, Wigler M, Storchová Z, Sheltzer JM | Developmental cell | 32097652 | Dev Cell | 2020 Feb 24 |
| Genome-wide identification and analysis of prognostic features in human cancers. | Smith JC, Sheltzer JM | Cell reports | 35354049 | Cell Rep | 2022 Mar 29 |
| Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract. | Smith JC, Sausville EL, Girish V, Yuan ML, Vasudevan A, John KM, Sheltzer JM | Developmental cell | 32425701 | Dev Cell | 2020 Jun 8 |
| MELK expression correlates with tumor mitotic activity but is not required for cancer growth. | Giuliano CJ, Lin A, Smith JC, Palladino AC, Sheltzer JM | eLife | 29417930 | Elife | 2018 Feb 8 |
| Extensive protein dosage compensation in aneuploid human cancers. | Schukken KM, Sheltzer JM | Genome research | 35701073 | Genome Res | 2022 Jul |
| Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. | Hoffmann M, Hofmann-Winkler H, Smith JC, Krüger N, Arora P, Sørensen LK, Søgaard OS, Hasselstrøm JB, Winkler M, Hempel T, Raich L, Olsson S, Danov O, Jonigk D, Yamazoe T, Yamatsuta K, Mizuno H, Ludwig S, Noé F, Kjolby M, Braun A, Sheltzer JM, Pöhlmann S | EBioMedicine | 33676899 | EBioMedicine | 2021 Mar |
| Off-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials. | Lin A, Giuliano CJ, Palladino A, John KM, Abramowicz C, Yuan ML, Sausville EL, Lukow DA, Liu L, Chait AR, Galluzzo ZC, Tucker C, Sheltzer JM | Science translational medicine | 31511426 | Sci Transl Med | 2019 Sep 11 |
| Discovering and validating cancer genetic dependencies: approaches and pitfalls. | Lin A, Sheltzer JM | Nature reviews. Genetics | 32561862 | Nat Rev Genet | 2020 Nov |
| Systematic identification of mutations and copy number alterations associated with cancer patient prognosis. | Smith JC, Sheltzer JM | eLife | 30526857 | Elife | 2018 Dec 11 |
| Generating Single Cell-Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. | Giuliano CJ, Lin A, Girish V, Sheltzer JM | Current protocols in molecular biology | 31503414 | Curr Protoc Mol Biol | 2019 Sep |
| Combustible and Electronic Cigarette Exposures Increase ACE2 Activity and SARS-CoV-2 Spike Binding. | Ghosh A, Girish V, Yuan ML, Coakley RD, Wrennall JA, Alexis NE, Sausville EL, Vasudevan A, Chait AR, Sheltzer JM, Tarran R | American journal of respiratory and critical care medicine | 34748720 | Am J Respir Crit Care Med | 2022 Jan 1 |
| Food Industry Donations to Academic Programs: A Cross-Sectional Examination of the Extent of Publicly Available Data. | A Bragg M, Elbel B, Nestle M | International journal of environmental research and public health | 32138233 | Int J Environ Res Public Health | 2020 Mar 3 |
| Popular Music Celebrity Endorsements in Food and Nonalcoholic Beverage Marketing. | Bragg MA, Miller AN, Elizee J, Dighe S, Elbel BD | Pediatrics | 27273712 | Pediatrics | 2016 Jul |
| COVID-19-Related Changes to Drug-Selling Networks and Their Effects on People Who Use Illicit Opioids. | Frank D, Krawczyk N, Arshonsky J, Bragg MA, Friedman SR, Bunting AM | Journal of studies on alcohol and drugs | 36971722 | J Stud Alcohol Drugs | 2023 Mar |
| COVID-Washing in US Food and Beverage Marketing on Twitter: Content Analysis. | Tsai KA, Cassidy O, Arshonsky J, Bond S, Del Giudice IM, Bragg MA | JMIR formative research | 36040957 | JMIR Form Res | 2022 Oct 14 |
| Latinx and White Adolescents' Preferences for Latinx-Targeted Celebrity and Noncelebrity Food Advertisements: Experimental Survey Study. | Bragg MA, Lutfeali S, Gabler DG, Quintana Licona DA, Harris JL | Journal of medical Internet research | 39889276 | J Med Internet Res | 2025 Jan 31 |
| A content analysis of outdoor non-alcoholic beverage advertisements in Ghana. | Bragg MA, Hardoby T, Pandit NG, Raji YR, Ogedegbe G | BMJ open | 28588104 | BMJ Open | 2017 Jun 6 |
| Sports Sponsorships of Food and Nonalcoholic Beverages. | Bragg MA, Miller AN, Roberto CA, Sam R, Sarda V, Harris JL, Brownell KD | Pediatrics | 29581181 | Pediatrics | 2018 Apr |
| How Food Marketing on Instagram Shapes Adolescents' Food Preferences: Online Randomized Trial. | Bragg M, Lutfeali S, Greene T, Osterman J, Dalton M | Journal of medical Internet research | 34677136 | J Med Internet Res | 2021 Oct 22 |
| Social Media Accounts of Food and Beverage Brands Have Disproportionately More Black and Hispanic Followers than White Followers. | Rummo PE, Arshonsky JH, Sharkey AL, Cassidy OL, Bragg MA | Health equity | 34235366 | Health Equity | 2021 |
| Waste generation and carbon emissions of a hospital kitchen in the US: Potential for waste diversion and carbon reductions. | Thiel CL, Park S, Musicus AA, Agins J, Gan J, Held J, Horrocks A, Bragg MA | PloS one | 33730046 | PLoS One | 2021 |
| An online randomized trial of healthy default beverages and unhealthy beverage restrictions on children's menus. | Rummo PE, Moran AJ, Musicus AA, Roberto CA, Bragg MA | Preventive medicine reports | 33318891 | Prev Med Rep | 2020 Dec |
| Brands with personalities - good for businesses, but bad for public health? A content analysis of how food and beverage brands personify themselves on Twitter. | Greene T, Seet C, Rodríguez Barrio A, McIntyre D, Kelly B, Bragg MA | Public health nutrition | 33820575 | Public Health Nutr | 2022 Jan |
| Fast food, beverage, and snack brands on social media in the United States: An examination of marketing techniques utilized in 2000 brand posts. | Bragg MA, Pageot YK, Amico A, Miller AN, Gasbarre A, Rummo PE, Elbel B | Pediatric obesity | 31875654 | Pediatr Obes | 2020 May |
| Marketing Food and Beverages to Youth Through Sports. | Bragg MA, Roberto CA, Harris JL, Brownell KD, Elbel B | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 29111226 | J Adolesc Health | 2018 Jan |
| Content analysis of targeted food and beverage advertisements in a Chinese-American neighbourhood. | Bragg MA, Pageot YK, Hernández-Villarreal O, Kaplan SA, Kwon SC | Public health nutrition | 28587693 | Public Health Nutr | 2017 Aug |
| A Qualitative Analysis of Black and White Adolescents' Perceptions of and Responses to Racially Targeted Food and Drink Commercials on Television. | Miller A, Cassidy O, Greene T, Arshonsky J, Albert SL, Bragg MA | International journal of environmental research and public health | 34770078 | Int J Environ Res Public Health | 2021 Nov 3 |
| Understanding the Extent of Adolescents' Willingness to Engage With Food and Beverage Companies' Instagram Accounts: Experimental Survey Study. | Lutfeali S, Ward T, Greene T, Arshonsky J, Seixas A, Dalton M, Bragg MA | JMIR public health and surveillance | 33107836 | JMIR Public Health Surveill | 2020 Oct 27 |
| Comparison of online marketing techniques on food and beverage companies' websites in six countries. | Bragg MA, Eby M, Arshonsky J, Bragg A, Ogedegbe G | Globalization and health | 29073900 | Global Health | 2017 Oct 26 |
| Evaluating the influence of racially targeted food and beverage advertisements on Black and White adolescents' perceptions and preferences. | Bragg MA, Miller AN, Kalkstein DA, Elbel B, Roberto CA | Appetite | 31055011 | Appetite | 2019 Sep 1 |
| Child Social Media Influencers and Unhealthy Food Product Placement. | Alruwaily A, Mangold C, Greene T, Arshonsky J, Cassidy O, Pomeranz JL, Bragg M | Pediatrics | 33106342 | Pediatrics | 2020 Nov |
| Examining the Relationship between Youth-Targeted Food Marketing Expenditures and the Demographics of Social Media Followers. | Rummo PE, Cassidy O, Wells I, Coffino JA, Bragg MA | International journal of environmental research and public health | 32138342 | Int J Environ Res Public Health | 2020 Mar 3 |
| Comparing the Prevalence of Alcohol, Combustible and Electronic Cigarettes, Hookah, and Marijuana, in Music Videos across 6 Genres of Popular Music from 2014-2020. | Albert SL, Rogers E, Hall Z, Zuardo G, Bragg MA | Substance use & misuse | 35377260 | Subst Use Misuse | 2022 |
| Comparing McDonald's food marketing practices on official Instagram accounts across 15 countries. | Cassidy O, Shin HW, Song E, Jiang E, Harri R, Cano C, Vedanthan R, Ogedegbe G, Bragg M | BMJ nutrition, prevention & health | 35028520 | BMJ Nutr Prev Health | 2021 |
| Sensitive Periods of Emotion Regulation: Influences of Parental Care on Frontoamygdala Circuitry and Plasticity. | Gee DG | New directions for child and adolescent development | 27589500 | New Dir Child Adolesc Dev | 2016 Sep |
| Ventral hippocampus interacts with prelimbic cortex during inhibition of threat response via learned safety in both mice and humans. | Meyer HC, Odriozola P, Cohodes EM, Mandell JD, Li A, Yang R, Hall BS, Haberman JT, Zacharek SJ, Liston C, Lee FS, Gee DG | Proceedings of the National Academy of Sciences of the United States of America | 31822612 | Proc Natl Acad Sci U S A | 2019 Dec 26 |
| Novel insights from actigraphy: Anxiety is associated with sleep quantity but not quality during childhood. | Cohodes EM, Abusch A, Odriozola P, Gee DG | Clinical child psychology and psychiatry | 30696260 | Clin Child Psychol Psychiatry | 2020 Jan |
| Associations among Household and Neighborhood Socioeconomic Disadvantages, Resting-state Frontoamygdala Connectivity, and Internalizing Symptoms in Youth. | Ip KI, Sisk LM, Horien C, Conley MI, Rapuano KM, Rosenberg MD, Greene AS, Scheinost D, Constable RT, Casey BJ, Baskin-Sommers A, Gee DG | Journal of cognitive neuroscience | 35104356 | J Cogn Neurosci | 2022 Sep 1 |
| Influences of early-life stress on frontolimbic circuitry: Harnessing a dimensional approach to elucidate the effects of heterogeneity in stress exposure. | Cohodes EM, Kitt ER, Baskin-Sommers A, Gee DG | Developmental psychobiology | 32227350 | Dev Psychobiol | 2021 Mar |
| Genetic variation in endocannabinoid signaling is associated with differential network-level functional connectivity in youth. | Sisk LM, Rapuano KM, Conley MI, Greene AS, Horien C, Rosenberg MD, Scheinost D, Constable RT, Glatt CE, Casey BJ, Gee DG | Journal of neuroscience research | 34496065 | J Neurosci Res | 2022 Mar |
| Caregiving Influences on Development: A Sensitive Period for Biological Embedding of Predictability and Safety Cues. | Gee DG, Cohodes EM | Current directions in psychological science | 34675455 | Curr Dir Psychol Sci | 2021 Oct 1 |
| Learning About Safety: Conditioned Inhibition as a Novel Approach to Fear Reduction Targeting the Developing Brain. | Odriozola P, Gee DG | The American journal of psychiatry | 33167673 | Am J Psychiatry | 2021 Feb 1 |
| Lack of robust associations between prepandemic coping strategies and frontolimbic circuitry with depression and anxiety symptoms during the COVID-19 pandemic: A preregistered longitudinal study. | Holt-Gosselin B, Cohodes EM, McCauley S, Foster JC, Odriozola P, Zacharek SJ, Kribakaran S, Haberman JT, Hodges HR, Gee DG | Behavioral neuroscience | 36395014 | Behav Neurosci | 2022 Dec |
| Parental Assistance with Emotion Regulation Moderates Link Between COVID-19 Stress and Child Mental Health. | Cohodes EM, McCauley S, Preece DA, Gross JJ, Gee DG | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 36399629 | J Clin Child Adolesc Psychol | 2025 Mar-Apr |
| Training the Next Generation of Clinical Psychological Scientists: A Data-Driven Call to Action. | Gee DG, DeYoung KA, McLaughlin KA, Tillman RM, Barch DM, Forbes EE, Krueger RF, Strauman TJ, Weierich MR, Shackman AJ | Annual review of clinical psychology | 35216523 | Annu Rev Clin Psychol | 2022 May 9 |
| Parents' emotion suppression exacerbates the effect of COVID-19 stress on youth internalizing symptomatology. | Cohodes EM, McCauley S, Preece DA, Gross JJ, Gee DG | Emotion (Washington, D.C.) | 36355667 | Emotion | 2023 Sep |
| Comparing neural correlates of conditioned inhibition between children with and without anxiety disorders - A preliminary study. | Harrewijn A, Kitt ER, Abend R, Matsumoto C, Odriozola P, Winkler AM, Leibenluft E, Pine DS, Gee DG | Behavioural brain research | 33160010 | Behav Brain Res | 2021 Feb 5 |
| Associations between early-life stress exposure and internalizing symptomatology during the COVID-19 pandemic: Assessing the role of neurobehavioral mediators. | Foster JC, Cohodes EM, Brieant AE, McCauley S, Odriozola P, Zacharek SJ, Pierre JC, Hodges HR, Kribakaran S, Haberman JT, Holt-Gosselin B, Gee DG | Biological psychiatry global open science | 35959474 | Biol Psychiatry Glob Open Sci | 2022 Aug 6 |
| Individual differences in frontolimbic circuitry and anxiety emerge with adolescent changes in endocannabinoid signaling across species. | Gee DG, Fetcho RN, Jing D, Li A, Glatt CE, Drysdale AT, Cohen AO, Dellarco DV, Yang RR, Dale AM, Jernigan TL, Lee FS, Casey BJ, PING Consortium | Proceedings of the National Academy of Sciences of the United States of America | 27001846 | Proc Natl Acad Sci U S A | 2016 Apr 19 |
| Development of the emotional brain. | Casey BJ, Heller AS, Gee DG, Cohen AO | Neuroscience letters | 29197573 | Neurosci Lett | 2019 Feb 6 |
| Atypical frontoamygdala functional connectivity in youth with autism. | Odriozola P, Dajani DR, Burrows CA, Gabard-Durnam LJ, Goodman E, Baez AC, Tottenham N, Uddin LQ, Gee DG | Developmental cognitive neuroscience | 30581125 | Dev Cogn Neurosci | 2019 Jun |
| Stress and adolescence: vulnerability and opportunity during a sensitive window of development. | Sisk LM, Gee DG | Current opinion in psychology | 34818623 | Curr Opin Psychol | 2022 Apr |
| Managing fear and anxiety in development: A framework for understanding the neurodevelopment of emotion regulation capacity and tendency. | Caballero C, Nook EC, Gee DG | Neuroscience and biobehavioral reviews | 36529313 | Neurosci Biobehav Rev | 2023 Feb |
| Leveraging the science of stress to promote resilience and optimize mental health interventions during adolescence. | Gee DG, Sisk LM, Cohodes EM, Bryce NV | Nature communications | 36171218 | Nat Commun | 2022 Sep 28 |
| Responding to threat: Associations between neural reactivity to and behavioral avoidance of threat in pediatric anxiety. | Kitt ER, Zacharek SJ, Odriozola P, Nardini C, Hommel G, Martino A, Anderson T, Spencer H, Broussard A, Dean J, Marin CE, Silverman WK, Lebowitz ER, Gee DG | Journal of affective disorders | 38290579 | J Affect Disord | 2024 Apr 15 |
| Hippocampal Involvement in Safety Signal Learning Varies With Anxiety Among Healthy Adults. | Odriozola P, Kribakaran S, Cohodes EM, Zacharek SJ, McCauley S, Haberman JT, Quintela LA, Hernandez C, Spencer H, Pruessner L, Caballero C, Gee DG | Biological psychiatry global open science | 38298801 | Biol Psychiatry Glob Open Sci | 2024 Jan |
| Emotion and Emotion Preferences in Daily Life: The Role of Anxiety. | Vanderlind WM, Everaert J, Caballero C, Cohodes EM, Gee DG | Clinical psychological science : a journal of the Association for Psychological Science | 35174008 | Clin Psychol Sci | 2021 Jun 7 |
| Normative range parenting and the developing brain: A scoping review and recommendations for future research. | Farber MJ, Gee DG, Hariri AR | The European journal of neuroscience | 33051903 | Eur J Neurosci | 2022 May |
| When do sensitive periods emerge later in development? | Gee DG | Trends in cognitive sciences | 34933793 | Trends Cogn Sci | 2022 Feb |
| Migration-related trauma and mental health among migrant children emigrating from Mexico and Central America to the United States: Effects on developmental neurobiology and implications for policy. | Cohodes EM, Kribakaran S, Odriozola P, Bakirci S, McCauley S, Hodges HR, Sisk LM, Zacharek SJ, Gee DG | Developmental psychobiology | 34292596 | Dev Psychobiol | 2021 Sep |
| Implications of the Research Domain Criteria project for childhood anxiety and its disorders. | Lebowitz ER, Gee DG, Pine DS, Silverman WK | Clinical psychology review | 29526524 | Clin Psychol Rev | 2018 Aug |
| Developmental neuroplasticity and adversity-related risk for psychopathology. | Sisk LM, Gee DG | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 39095522 | Neuropsychopharmacology | 2024 Nov |
| Predicting Mental Health in Adolescence: Frontoinsular Circuitry, Emotion in Daily Life, and Risk for Depression. | Gee DG, Caballero C | Biological psychiatry. Cognitive neuroscience and neuroimaging | 31395211 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2019 Aug |
| Reforming clinical psychological science training: The importance of collaborative decision-making with trainees. | Gee DG, Shackman AJ | Clinical psychological science : a journal of the Association for Psychological Science | 38550306 | Clin Psychol Sci | 2024 Jan |
| Emotion regulation as a transdiagnostic factor in the development of internalizing and externalizing psychopathology: Current and future directions. | Aldao A, Gee DG, De Los Reyes A, Seager I | Development and psychopathology | 27739387 | Dev Psychopathol | 2016 Nov |
| Caregiving influences on emotional learning and regulation: Applying a sensitive period model. | Gee DG | Current opinion in behavioral sciences | 33718534 | Curr Opin Behav Sci | 2020 Dec |
| Parental Buffering of Stress in the Time of COVID-19: Family-Level Factors May Moderate the Association Between Pandemic-Related Stress and Youth Symptomatology. | Cohodes EM, McCauley S, Gee DG | Research on child and adolescent psychopathology | 33591457 | Res Child Adolesc Psychopathol | 2021 Jul |
| Decomposing complex links between the childhood environment and brain structure in school-aged youth. | Hong SJ, Sisk LM, Caballero C, Mekhanik A, Roy AK, Milham MP, Gee DG | Developmental cognitive neuroscience | 33556882 | Dev Cogn Neurosci | 2021 Apr |
| The Role of the Endocannabinoid System and Genetic Variation in Adolescent Brain Development. | Meyer HC, Lee FS, Gee DG | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 28685756 | Neuropsychopharmacology | 2018 Jan |
| Meta-analysis of Structural Magnetic Resonance Imaging Studies in Pediatric Posttraumatic Stress Disorder and Comparison With Related Conditions. | Kribakaran S, Danese A, Bromis K, Kempton MJ, Gee DG | Biological psychiatry. Cognitive neuroscience and neuroimaging | 31690501 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2020 Jan |
| Neurocognitive Development of Motivated Behavior: Dynamic Changes across Childhood and Adolescence. | Gee DG, Bath KG, Johnson CM, Meyer HC, Murty VP, van den Bos W, Hartley CA | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30381435 | J Neurosci | 2018 Oct 31 |
| When Uncertainty Is a Certainty: Optimizing Exposure-Based Therapies. | Gee DG, Odriozola P | Biological psychiatry global open science | 36325300 | Biol Psychiatry Glob Open Sci | 2021 Sep |
| Leveraging the developmental neuroscience of caregiving to promote resilience among youth exposed to adversity. | Gee DG, Cohodes EM | Development and psychopathology | 37929292 | Dev Psychopathol | 2023 Dec |
| Family accommodation in pediatric anxiety: Relations with avoidance and self-efficacy. | Kitt ER, Lewis KM, Galbraith J, Abend R, Smith AR, Lebowitz ER, Pine DS, Gee DG | Behaviour research and therapy | 35613517 | Behav Res Ther | 2022 Jul |
| Associations among negative life events, changes in cortico-limbic connectivity, and psychopathology in the ABCD Study. | Brieant AE, Sisk LM, Gee DG | Developmental cognitive neuroscience | 34710799 | Dev Cogn Neurosci | 2021 Dec |
| Leveraging big data to map neurodevelopmental trajectories in pediatric anxiety. | Zacharek SJ, Kribakaran S, Kitt ER, Gee DG | Developmental cognitive neuroscience | 34147988 | Dev Cogn Neurosci | 2021 Aug |
| Experimental evidence for a child-to-adolescent switch in human amygdala-prefrontal cortex communication: A cross-sectional pilot study. | Gee DG, Hanson C, Caglar LR, Fareri DS, Gabard-Durnam LJ, Mills-Finnerty C, Goff B, Caldera CJ, Lumian DS, Flannery J, Hanson SJ, Tottenham N | Developmental science | 35080089 | Dev Sci | 2022 Jul |
| Neurodevelopmental mechanisms linking early experiences and mental health: Translating science to promote well-being among youth. | Gee DG | The American psychologist | 36595400 | Am Psychol | 2022 Dec |
| Validation of an electronic self-administered version of the Dimensional Inventory of Stress and Trauma Across the Lifespan in a large sample of young adults. | Cohodes EM, Mandell JD, Notti ME, Schroeder MM, Ababio R, McCauley S, Pierre JC, Hodges HR, Gee DG | Psychological trauma : theory, research, practice and policy | 37956029 | Psychol Trauma | 2023 Nov 13 |
| Developmental Differences in a Hippocampal-Cingulate Pathway Involved in Learned Safety Following Interpersonal Trauma Exposure. | Kribakaran S, DeCross SN, Odriozola P, McLaughlin KA, Gee DG | Journal of the American Academy of Child and Adolescent Psychiatry | 39368629 | J Am Acad Child Adolesc Psychiatry | 2024 Oct 3 |
| Development and validation of the Dimensional Inventory of Stress and Trauma Across the Lifespan (DISTAL): A novel assessment tool to facilitate the dimensional study of psychobiological sequelae of exposure to adversity. | Cohodes EM, McCauley S, Pierre JC, Hodges HR, Haberman JT, Santiuste I, Rogers MK, Wang J, Mandell JD, Gee DG | Developmental psychobiology | 37073593 | Dev Psychobiol | 2023 May |
| Person-centered analyses reveal that developmental adversity at moderate levels and neural threat/safety discrimination are associated with lower anxiety in early adulthood. | Sisk LM, Keding TJ, Ruiz S, Odriozola P, Kribakaran S, Cohodes EM, McCauley S, Zacharek SJ, Hodges HR, Haberman JT, Pierre JC, Caballero C, Baskin-Sommers A, Gee DG | Communications psychology | 40044923 | Commun Psychol | 2025 Mar 5 |
| Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome. | Durrant MG, Fanton A, Tycko J, Hinks M, Chandrasekaran SS, Perry NT, Schaepe J, Du PP, Lotfy P, Bassik MC, Bintu L, Bhatt AS, Hsu PD | Nature biotechnology | 36217031 | Nat Biotechnol | 2023 Apr |
| Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors. | Konermann S, Lotfy P, Brideau NJ, Oki J, Shokhirev MN, Hsu PD | Cell | 29551272 | Cell | 2018 Apr 19 |
| Accelerated RNA detection using tandem CRISPR nucleases. | Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, de León Derby MD, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, Fozouni P, Shu J, Stephens SI, Kumar GR, Zhao C, Mok A, Iavarone AT, Escajeda AM, McIntosh R, Kim SE, Dugan EJ, IGI Testing Consortium, Pollard KS, Tan MX, Ott M, Fletcher DA, Lareau LF, Hsu PD, Savage DF, Doudna JA | medRxiv : the preprint server for health sciences | 33791736 | medRxiv | 2021 Mar 24 |
| Genome-wide bidirectional CRISPR screens identify mucins as host factors modulating SARS-CoV-2 infection. | Biering SB, Sarnik SA, Wang E, Zengel JR, Leist SR, Schäfer A, Sathyan V, Hawkins P, Okuda K, Tau C, Jangid AR, Duffy CV, Wei J, Gilmore RC, Alfajaro MM, Strine MS, Nguyenla X, Van Dis E, Catamura C, Yamashiro LH, Belk JA, Begeman A, Stark JC, Shon DJ, Fox DM, Ezzatpour S, Huang E, Olegario N, Rustagi A, Volmer AS, Livraghi-Butrico A, Wehri E, Behringer RR, Cheon DJ, Schaletzky J, Aguilar HC, Puschnik AS, Button B, Pinsky BA, Blish CA, Baric RS, O'Neal WK, Bertozzi CR, Wilen CB, Boucher RC, Carette JE, Stanley SA, Harris E, Konermann S, Hsu PD | Nature genetics | 35879412 | Nat Genet | 2022 Aug |
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| Accelerated RNA detection using tandem CRISPR nucleases. | Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, Díaz de León Derby M, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, Fozouni P, Shu J, Stephens SI, Kumar GR, Zhao C, Mok A, Iavarone AT, Escajeda AM, McIntosh R, Kim S, Dugan EJ, IGI Testing Consortium, Pollard KS, Tan MX, Ott M, Fletcher DA, Lareau LF, Hsu PD, Savage DF, Doudna JA | Nature chemical biology | 34354262 | Nat Chem Biol | 2021 Sep |
| Rapid detection of SARS-CoV-2 RNA in saliva via Cas13. | Chandrasekaran SS, Agrawal S, Fanton A, Jangid AR, Charrez B, Escajeda AM, Son S, Mcintosh R, Tran H, Bhuiya A, de León Derby MD, Switz NA, Armstrong M, Harris AR, Prywes N, Lukarska M, Biering SB, Smock DCJ, Mok A, Knott GJ, Dang Q, Van Dis E, Dugan E, Kim S, Liu TY, IGI Testing Consortium, Moehle EA, Kogut K, Eskenazi B, Harris E, Stanley SA, Lareau LF, Tan MX, Fletcher DA, Doudna JA, Savage DF, Hsu PD | Nature biomedical engineering | 35953650 | Nat Biomed Eng | 2022 Aug |
| Cancer-associated mutations in human pyruvate kinase M2 impair enzyme activity. | Liu VM, Howell AJ, Hosios AM, Li Z, Israelsen WJ, Vander Heiden MG | FEBS letters | 31642061 | FEBS Lett | 2020 Feb |
| Nesting box imager: Contact-free, real-time measurement of activity, surface body temperature, and respiratory rate applied to hibernating mouse models. | Kallmyer NE, Shin HJ, Brem EA, Israelsen WJ, Reuel NF | PLoS biology | 31339883 | PLoS Biol | 2019 Jul |
| Fibroblasts as an experimental model system for the study of comparative physiology. | Madelaire CB, Klink AC, Israelsen WJ, Hindle AG | Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology | 35321853 | Comp Biochem Physiol B Biochem Mol Biol | 2022 Jun-Jul |
| Cutaneous Dermatophilosis in a Meadow Jumping Mouse (Zapus hudsonius). | Caron TJ, Artim SC, Israelsen WJ, Holcombe HR, Fox JG, Bakthavatchalu V | Comparative medicine | 29460718 | Comp Med | 2018 Feb 1 |
| Breeding and hibernation of captive meadow jumping mice (Zapus hudsonius). | Brem EA, McNulty AD, Israelsen WJ | PloS one | 33970917 | PLoS One | 2021 |
| Courtship behavior of the meadow jumping mouse (Zapus hudsonius). | Brem EA, Israelsen WJ | Western North American naturalist | 34290569 | West N Am Nat | 2021 |
| Convection-Enhanced Delivery. | Mehta AM, Sonabend AM, Bruce JN | Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics | 28299724 | Neurotherapeutics | 2017 Apr |
| Can patient selection and neoadjuvant administration resuscitate PD-1 inhibitors for glioblastoma? | Arrieta VA, Iwamoto F, Lukas RV, Sachdev S, Rabadan R, Sonabend AM | Journal of neurosurgery | 31812138 | J Neurosurg | 2020 May 1 |
| Ultrasound-mediated Delivery of Paclitaxel for Glioma: A Comparative Study of Distribution, Toxicity, and Efficacy of Albumin-bound Versus Cremophor Formulations. | Zhang DY, Dmello C, Chen L, Arrieta VA, Gonzalez-Buendia E, Kane JR, Magnusson LP, Baran A, James CD, Horbinski C, Carpentier A, Desseaux C, Canney M, Muzzio M, Stupp R, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 31831565 | Clin Cancer Res | 2020 Jan 15 |
| The possibility of cancer immune editing in gliomas. A critical review. | Arrieta VA, Cacho-Díaz B, Zhao J, Rabadan R, Chen L, Sonabend AM | Oncoimmunology | 29900059 | Oncoimmunology | 2018 |
| Ribosomal protein S11 influences glioma response to TOP2 poisons. | Awah CU, Chen L, Bansal M, Mahajan A, Winter J, Lad M, Warnke L, Gonzalez-Buendia E, Park C, Zhang D, Feldstein E, Yu D, Zannikou M, Balyasnikova IV, Martuscello R, Konerman S, Győrffy B, Burdett KB, Scholtens DM, Stupp R, Ahmed A, Hsu P, Sonabend AM | Oncogene | 32528131 | Oncogene | 2020 Jul |
| Emerging immunotherapies for malignant glioma: from immunogenomics to cell therapy. | Dunn GP, Cloughesy TF, Maus MV, Prins RM, Reardon DA, Sonabend AM | Neuro-oncology | 32615600 | Neuro Oncol | 2020 Oct 14 |
| The safety of resection for primary central nervous system lymphoma: a single institution retrospective analysis. | Cloney MB, Sonabend AM, Yun J, Yang J, Iwamoto F, Singh S, Bhagat G, Canoll P, Zanazzi G, Bruce JN, Sisti M, Sheth S, Connolly ES, McKhann G | Journal of neuro-oncology | 28116650 | J Neurooncol | 2017 Mar |
| ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma. | Arrieta VA, Chen AX, Kane JR, Kang SJ, Kassab C, Dmello C, Zhao J, Burdett KB, Upadhyayula PS, Lee-Chang C, Shilati J, Jaishankar D, Chen L, Gould A, Zhang D, Yuan J, Zhao W, Ling X, Burks JK, Laffleur B, Amidei C, Bruce JN, Lukas RV, Yamaguchi JT, Cieremans D, Rothschild G, Basu U, McCord M, Brat DJ, Zhang H, Cooper LAD, Zhang B, Sims P, Cloughesy TF, Prins R, Canoll P, Stupp R, Heimberger AB, Horbinski C, Iwamoto FM, Rabadan R, Sonabend AM | Nature cancer | 35121903 | Nat Cancer | 2021 Dec |
| Translocon-associated Protein Subunit SSR3 Determines and Predicts Susceptibility to Paclitaxel in Breast Cancer and Glioblastoma. | Dmello C, Sonabend A, Arrieta VA, Zhang DY, Kanojia D, Chen L, Gould A, Zhang J, Kang SJ, Winter J, Horbinski C, Amidei C, Győrffy B, Cordero A, Chang CL, Castro B, Hsu P, Ahmed AU, Lesniak MS, Stupp R, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 35552677 | Clin Cancer Res | 2022 Jul 15 |
| Craniotomy and Survival for Primary Central Nervous System Lymphoma. | Rae AI, Mehta A, Cloney M, Kinslow CJ, Wang TJC, Bhagat G, Canoll PD, Zanazzi GJ, Sisti MB, Sheth SA, Connolly ES, McKhann GM, Bruce JN, Iwamoto FM, Sonabend AM | Neurosurgery | 29660011 | Neurosurgery | 2019 Apr 1 |
| Assessing the Safety of Craniotomy for Resection of Primary Central Nervous System Lymphoma: A Nationwide Inpatient Sample Analysis. | Yun J, Yang J, Cloney M, Mehta A, Singh S, Iwamoto FM, Neugut AI, Sonabend AM | Frontiers in neurology | 28955300 | Front Neurol | 2017 |
| Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. | Zhao J, Chen AX, Gartrell RD, Silverman AM, Aparicio L, Chu T, Bordbar D, Shan D, Samanamud J, Mahajan A, Filip I, Orenbuch R, Goetz M, Yamaguchi JT, Cloney M, Horbinski C, Lukas RV, Raizer J, Rae AI, Yuan J, Canoll P, Bruce JN, Saenger YM, Sims P, Iwamoto FM, Sonabend AM, Rabadan R | Nature medicine | 30742119 | Nat Med | 2019 Mar |
| Overcoming the Blood-Brain Barrier with an Implantable Ultrasound Device. | Sonabend AM, Stupp R | Clinical cancer research : an official journal of the American Association for Cancer Research | 31076548 | Clin Cancer Res | 2019 Jul 1 |
| TOP2B Enzymatic Activity on Promoters and Introns Modulates Multiple Oncogenes in Human Gliomas. | Gonzalez-Buendia E, Zhao J, Wang L, Mukherjee S, Zhang D, Arrieta VA, Feldstein E, Kane JR, Kang SJ, Lee-Chang C, Mahajan A, Chen L, Realubit R, Karan C, Magnuson L, Horbinski C, Marshall SA, Sarkaria JN, Mohyeldin A, Nakano I, Bansal M, James CD, Brat DJ, Ahmed A, Canoll P, Rabadan R, Shilatifard A, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 34433651 | Clin Cancer Res | 2021 Oct 15 |
| Defining Glioblastoma Resectability Through the Wisdom of the Crowd: A Proof-of-Principle Study. | Neurosurgery | 29669127 | Neurosurgery | 2018 May 1 | |
| Cancer Immunoediting in Gliomas: Recent Advances and Implications for Immunotherapy. | Shah PV, Arrieta VA, Lee-Chang C, Sonabend AM | Journal of cellular immunology | 35592772 | J Cell Immunol | 2020 |
| Defining Glioblastoma Resectability Through the Wisdom of the Crowd: A Proof-of-Principle Study. | Sonabend AM, Zacharia BE, Cloney MB, Sonabend A, Showers C, Ebiana V, Nazarian M, Swanson KR, Baldock A, Brem H, Bruce JN, Butler W, Cahill DP, Carter B, Orringer DA, Roberts DW, Sagher O, Sanai N, Schwartz TH, Silbergeld DL, Sisti MB, Thompson RC, Waziri AE, Ghogawala Z, McKhann G 2nd | Neurosurgery | 27509070 | Neurosurgery | 2017 Apr 1 |
| Primary Central Nervous System Lymphoma: A Critical Review of the Role of Surgery for Resection. | Yun J, Iwamoto FM, Sonabend AM | Archives in cancer research | 28239600 | Arch Cancer Res | 2016 |
| Author Correction: Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. | Zhao J, Chen AX, Gartrell RD, Silverman AM, Aparicio L, Chu T, Bordbar D, Shan D, Samanamud J, Mahajan A, Filip I, Orenbuch R, Goetz M, Yamaguchi JT, Cloney M, Horbinski C, Lukas RV, Raizer J, Rae AI, Yuan J, Canoll P, Bruce JN, Saenger YM, Sims P, Iwamoto FM, Sonabend AM, Rabadan R | Nature medicine | 30996326 | Nat Med | 2019 Jun |
| CD8(+) T-cell-Mediated Immunoediting Influences Genomic Evolution and Immune Evasion in Murine Gliomas. | Kane JR, Zhao J, Tsujiuchi T, Laffleur B, Arrieta VA, Mahajan A, Rao G, Mela A, Dmello C, Chen L, Zhang DY, González-Buendia E, Lee-Chang C, Xiao T, Rothschild G, Basu U, Horbinski C, Lesniak MS, Heimberger AB, Rabadan R, Canoll P, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 32430477 | Clin Cancer Res | 2020 Aug 15 |
| Glioma immunoediting, a driver of tumor evolution, and the next battle for immunotherapy. | Sonabend AM, Stupp R, Lee-Chang C, Okada H | Oncotarget | 33456708 | Oncotarget | 2021 Jan 5 |
| Topoisomerase II Poisons for Glioblastoma; Existing Challenges and Opportunities to Personalize Therapy. | Mehta A, Awah CU, Sonabend AM | Frontiers in neurology | 29988316 | Front Neurol | 2018 |
| Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade. | Dmello C, Zhao J, Chen L, Gould A, Castro B, Arrieta VA, Zhang DY, Kim KS, Kanojia D, Zhang P, Miska J, Yeeravalli R, Habashy K, Saganty R, Kang SJ, Fares J, Liu C, Dunn G, Bartom E, Schipma MJ, Hsu PD, Alghamri MS, Lesniak MS, Heimberger AB, Rabadan R, Lee-Chang C, Sonabend AM | Nature communications | 36949040 | Nat Commun | 2023 Mar 22 |
| Retrotransposons hijack alt-EJ for DNA replication and eccDNA biogenesis. | Yang F, Su W, Chung OW, Tracy L, Wang L, Ramsden DA, Zhang ZZZ | Nature | 37438532 | Nature | 2023 Aug |
| A Robust Transposon-Endogenizing Response from Germline Stem Cells. | Moon S, Cassani M, Lin YA, Wang L, Dou K, Zhang ZZ | Developmental cell | 30393075 | Dev Cell | 2018 Dec 3 |
| Retrotransposon activation during Drosophila metamorphosis conditions adult antiviral responses. | Wang L, Tracy L, Su W, Yang F, Feng Y, Silverman N, Zhang ZZZ | Nature genetics | 36396707 | Nat Genet | 2022 Dec |
| Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification. | Yu B, Lin YA, Parhad SS, Jin Z, Ma J, Theurkauf WE, Zhang ZZ, Huang Y | EMBO reports | 29858487 | EMBO Rep | 2018 Jul |
| Hijacking Oogenesis Enables Massive Propagation of LINE and Retroviral Transposons. | Wang L, Dou K, Moon S, Tan FJ, Zhang ZZ | Cell | 30057117 | Cell | 2018 Aug 23 |
| Drosophila P75 safeguards oogenesis by preventing H3K9me2 spreading. | Dou K, Liu Y, Zhang Y, Wang C, Huang Y, Zhang ZZ | Journal of genetics and genomics = Yi chuan xue bao | 32499180 | J Genet Genomics | 2020 Apr 20 |
| Randomized trial of calcipotriol combined with 5-fluorouracil for skin cancer precursor immunotherapy. | Cunningham TJ, Tabacchi M, Eliane JP, Tuchayi SM, Manivasagam S, Mirzaalian H, Turkoz A, Kopan R, Schaffer A, Saavedra AP, Wallendorf M, Cornelius LA, Demehri S | The Journal of clinical investigation | 27869649 | J Clin Invest | 2017 Jan 3 |
| Reduction in Human Epidermal Langerhans Cells with Age Is Associated with Decline in CXCL14-Mediated Recruitment of CD14(+) Monocytes. | Hasegawa T, Feng Z, Yan Z, Ngo KH, Hosoi J, Demehri S | The Journal of investigative dermatology | 31881212 | J Invest Dermatol | 2020 Jul |
| Immunity to commensal papillomaviruses protects against skin cancer. | Strickley JD, Messerschmidt JL, Awad ME, Li T, Hasegawa T, Ha DT, Nabeta HW, Bevins PA, Ngo KH, Asgari MM, Nazarian RM, Neel VA, Jenson AB, Joh J, Demehri S | Nature | 31666702 | Nature | 2019 Nov |
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| Fractional laser exposure induces neutrophil infiltration (N1 phenotype) into the tumor and stimulates systemic anti-tumor immune response. | Kawakubo M, Demehri S, Manstein D | PloS one | 28922374 | PLoS One | 2017 |
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| Rejection of benign melanocytic nevi by nevus-resident CD4(+) T cells. | Schiferle EB, Cheon SY, Ham S, Son HG, Messerschmidt JL, Lawrence DP, Cohen JV, Flaherty KT, Moon JJ, Lian CG, Sullivan RJ, Demehri S | Science advances | 34162549 | Sci Adv | 2021 Jun |
| Topical Combination of Fluorouracil and Calcipotriene as a Palliative Therapy for Refractory Extramammary Paget Disease. | Molina GE, Khalifian S, Mull JL, Chen L, Rosman IS, Faulkner-Jones BE, Ngo KH, Demehri S, Cornelius LA, Wu PA | JAMA dermatology | 30785593 | JAMA Dermatol | 2019 May 1 |
| Skin cancer precursor immunotherapy for squamous cell carcinoma prevention. | Rosenberg AR, Tabacchi M, Ngo KH, Wallendorf M, Rosman IS, Cornelius LA, Demehri S | JCI insight | 30895944 | JCI Insight | 2019 Mar 21 |
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| CD4+ T helper 2 cell-macrophage crosstalk induces IL-24-mediated breast cancer suppression. | Wang B, Xia Y, Zhou C, Zeng Y, Son HG, Demehri S | JCI insight | 39782693 | JCI Insight | 2025 Jan 9 |
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| TSLP/dendritic cell axis promotes CD4+ T cell tolerance to the gut microbiome. | Messerschmidt JL, Azin M, Dempsey KE, Demehri S | JCI insight | 37427591 | JCI Insight | 2023 Jul 10 |
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| Personalizing neuromodulation. | Medaglia JD, Erickson B, Zimmerman J, Kelkar A | International journal of psychophysiology : official journal of the International Organization of Psychophysiology | 30685229 | Int J Psychophysiol | 2020 Aug |
| Data-driven brain network models differentiate variability across language tasks. | Bansal K, Medaglia JD, Bassett DS, Vettel JM, Muldoon SF | PLoS computational biology | 30332401 | PLoS Comput Biol | 2018 Oct |
| Brain state expression and transitions are related to complex executive cognition in normative neurodevelopment. | Medaglia JD, Satterthwaite TD, Kelkar A, Ciric R, Moore TM, Ruparel K, Gur RC, Gur RE, Bassett DS | NeuroImage | 29126965 | Neuroimage | 2018 Feb 1 |
| TMS-induced phase resets depend on TMS intensity and EEG phase. | Erickson B, Kim B, Sabes P, Rich R, Hatcher A, Fernandez-Nuñez G, Mentzelopoulos G, Vitale F, Medaglia J | Journal of neural engineering | 39321851 | J Neural Eng | 2024 Oct 24 |
| Optimally controlling the human connectome: the role of network topology. | Betzel RF, Gu S, Medaglia JD, Pasqualetti F, Bassett DS | Scientific reports | 27468904 | Sci Rep | 2016 Jul 29 |
| Driving the brain towards creativity and intelligence: A network control theory analysis. | Kenett YN, Medaglia JD, Beaty RE, Chen Q, Betzel RF, Thompson-Schill SL, Qiu J | Neuropsychologia | 29307585 | Neuropsychologia | 2018 Sep |
| Functional Neuroimaging in Traumatic Brain Injury: From Nodes to Networks. | Medaglia JD | Frontiers in neurology | 28883806 | Front Neurol | 2017 |
| Brain network efficiency is influenced by the pathologic source of corticobasal syndrome. | Medaglia JD, Huang W, Segarra S, Olm C, Gee J, Grossman M, Ribeiro A, McMillan CT, Bassett DS | Neurology | 28779011 | Neurology | 2017 Sep 26 |
| Language Tasks and the Network Control Role of the Left Inferior Frontal Gyrus. | Medaglia JD, Harvey DY, Kelkar AS, Zimmerman JP, Mass JA, Bassett DS, Hamilton RH | eNeuro | 34244340 | eNeuro | 2021 Sep-Oct |
| MXene-infused bioelectronic interfaces for multiscale electrophysiology and stimulation. | Driscoll N, Erickson B, Murphy BB, Richardson AG, Robbins G, Apollo NV, Mentzelopoulos G, Mathis T, Hantanasirisakul K, Bagga P, Gullbrand SE, Sergison M, Reddy R, Wolf JA, Chen HI, Lucas TH, Dillingham TR, Davis KA, Gogotsi Y, Medaglia JD, Vitale F | Science translational medicine | 34550728 | Sci Transl Med | 2021 Sep 22 |
| Implementing a concept network model. | Solomon SH, Medaglia JD, Thompson-Schill SL | Behavior research methods | 30891712 | Behav Res Methods | 2019 Aug |
| Investigating the influence of an effort-reward interaction on cognitive fatigue in individuals with multiple sclerosis. | Erani F, Patel D, Deck BL, Hamilton RH, Schultheis MT, Medaglia JD | Journal of neuropsychology | 36208463 | J Neuropsychol | 2023 Jun |
| Money versus performance feedback: money associated with lower feelings of cognitive fatigue. | Erani F, Stoll H, Patel D, Schultheis MT, Medaglia JD | Journal of clinical and experimental neuropsychology | 39611366 | J Clin Exp Neuropsychol | 2024 Oct |
| Combining transcranial magnetic stimulation with functional magnetic resonance imaging for probing and modulating neural circuits relevant to affective disorders. | Oathes DJ, Balderston NL, Kording KP, DeLuisi JA, Perez GM, Medaglia JD, Fan Y, Duprat RJ, Satterthwaite TD, Sheline YI, Linn KA | Wiley interdisciplinary reviews. Cognitive science | 33470055 | Wiley Interdiscip Rev Cogn Sci | 2021 Jul |
| Graph Theoretic Analysis of Resting State Functional MR Imaging. | Medaglia JD | Neuroimaging clinics of North America | 28985931 | Neuroimaging Clin N Am | 2017 Nov |
| Network Controllability in the Inferior Frontal Gyrus Relates to Controlled Language Variability and Susceptibility to TMS. | Medaglia JD, Harvey DY, White N, Kelkar A, Zimmerman J, Bassett DS, Hamilton RH | The Journal of neuroscience : the official journal of the Society for Neuroscience | 29884739 | J Neurosci | 2018 Jul 11 |
| Functional Alignment with Anatomical Networks is Associated with Cognitive Flexibility. | Medaglia JD, Huang W, Karuza EA, Kelkar A, Thompson-Schill SL, Ribeiro A, Bassett DS | Nature human behaviour | 30498789 | Nat Hum Behav | 2018 |
| A computational network control theory analysis of depression symptoms. | Kenett YN, Beaty RE, Medaglia JD | Personality neuroscience | 30706049 | Personal Neurosci | 2018 Aug 10 |
| Context-Dependent Risk & Benefit Sensitivity Mediate Judgments About Cognitive Enhancement. | Fernandez K, Hamilton R, Cabrera L, Medaglia JD | AJOB neuroscience | 34931943 | AJOB Neurosci | 2022 Jan-Mar |
| Enhancing cognitive control with transcranial magnetic stimulation in subject-specific frontoparietal networks. | Dengler J, Deck BL, Stoll H, Fernandez-Nunez G, Kelkar AS, Rich RR, Erickson BA, Erani F, Faseyitan O, Hamilton RH, Medaglia JD | Cortex; a journal devoted to the study of the nervous system and behavior | 38330778 | Cortex | 2024 Mar |
| Clarifying cognitive control and the controllable connectome. | Medaglia JD | Wiley interdisciplinary reviews. Cognitive science | 29971940 | Wiley Interdiscip Rev Cogn Sci | 2019 Jan |
| What the replication crisis means for intervention science. | Hillary FG, Medaglia JD | International journal of psychophysiology : official journal of the International Organization of Psychophysiology | 31082406 | Int J Psychophysiol | 2020 Aug |
| Simulated Attack Reveals How Lesions Affect Network Properties in Poststroke Aphasia. | Medaglia JD, Erickson BA, Pustina D, Kelkar AS, DeMarco AT, Dickens JV, Turkeltaub PE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 35545436 | J Neurosci | 2022 Jun 15 |
| c-Jun N-Terminal Kinases (JNKs) Are Critical Mediators of Osteoblast Activity In Vivo. | Xu R, Zhang C, Shin DY, Kim JM, Lalani S, Li N, Yang YS, Liu Y, Eiseman M, Davis RJ, Shim JH, Greenblatt MB | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 28561373 | J Bone Miner Res | 2017 Sep |
| Endothelial-specific inhibition of NF-κB enhances functional haematopoiesis. | Poulos MG, Ramalingam P, Gutkin MC, Kleppe M, Ginsberg M, Crowley MJP, Elemento O, Levine RL, Rafii S, Kitajewski J, Greenblatt MB, Shim JH, Butler JM | Nature communications | 28000664 | Nat Commun | 2016 Dec 21 |
| Targeting skeletal endothelium to ameliorate bone loss. | Xu R, Yallowitz A, Qin A, Wu Z, Shin DY, Kim JM, Debnath S, Ji G, Bostrom MP, Yang X, Zhang C, Dong H, Kermani P, Lalani S, Li N, Liu Y, Poulos MG, Wach A, Zhang Y, Inoue K, Di Lorenzo A, Zhao B, Butler JM, Shim JH, Glimcher LH, Greenblatt MB | Nature medicine | 29785024 | Nat Med | 2018 Jun |
| The Unmixing Problem: A Guide to Applying Single-Cell RNA Sequencing to Bone. | Greenblatt MB, Ono N, Ayturk UM, Debnath S, Lalani S | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 31336008 | J Bone Miner Res | 2019 Jul |
| Regulation of sclerostin by the SIRT1 stabilization pathway in osteocytes. | Kim JM, Yang YS, Xie J, Lee O, Kim J, Hong J, Boldyreff B, Filhol O, Chun H, Greenblatt MB, Gao G, Shim JH | Cell death and differentiation | 35169297 | Cell Death Differ | 2022 Aug |
| Osteoclasts are not a source of SLIT3. | Li N, Inoue K, Sun J, Niu Y, Lalani S, Yallowitz A, Yang X, Zhang C, Shen R, Zhao B, Xu R, Greenblatt MB | Bone research | 32133214 | Bone Res | 2020 |
| Adult stem cells and regenerative medicine-a symposium report. | Cable J, Fuchs E, Weissman I, Jasper H, Glass D, Rando TA, Blau H, Debnath S, Oliva A, Park S, Passegué E, Kim C, Krasnow MA | Annals of the New York Academy of Sciences | 31655007 | Ann N Y Acad Sci | 2020 Feb |
| RNA-seq Analysis of Peri-Implant Tissue Shows Differences in Immune, Notch, Wnt, and Angiogenesis Pathways in Aged Versus Young Mice. | Turajane K, Ji G, Chinenov Y, Chao M, Ayturk U, Suhardi VJ, Greenblatt MB, Ivashkiv LB, Bostrom MP, Yang X | JBMR plus | 34761143 | JBMR Plus | 2021 Nov |
| Alendronate enhances osseointegration in a murine implant model. | Vertesich K, Sosa BR, Niu Y, Ji G, Suhardi V, Turajane K, Mun S, Xu R, Windhager R, Park-Min KH, Greenblatt MB, Bostrom MP, Yang X | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 32915488 | J Orthop Res | 2021 Apr |
| Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis. | Deng Z, Ng C, Inoue K, Chen Z, Xia Y, Hu X, Greenblatt M, Pernis A, Zhao B | eLife | 33373293 | Elife | 2020 Dec 29 |
| Vascular endothelial growth factor pathway promotes osseointegration and CD31(hi)EMCN(hi) endothelium expansion in a mouse tibial implant model: an animal study. | Ji G, Xu R, Niu Y, Li N, Ivashkiv L, Bostrom MPG, Greenblatt MB, Yang X | The bone & joint journal | 31256654 | Bone Joint J | 2019 Jul |
| Osteoblast-Osteoclast Communication and Bone Homeostasis. | Kim JM, Lin C, Stavre Z, Greenblatt MB, Shim JH | Cells | 32927921 | Cells | 2020 Sep 10 |
| MEKK2 mediates aberrant ERK activation in neurofibromatosis type I. | Bok S, Shin DY, Yallowitz AR, Eiseman M, Cung M, Xu R, Li N, Sun J, Williams AL, Scott JE, Su B, Shim JH, Greenblatt MB | Nature communications | 33177525 | Nat Commun | 2020 Nov 11 |
| Bone Turnover Markers in the Diagnosis and Monitoring of Metabolic Bone Disease. | Greenblatt MB, Tsai JN, Wein MN | Clinical chemistry | 27940448 | Clin Chem | 2017 Feb |
| SMURF2 regulates bone homeostasis by disrupting SMAD3 interaction with vitamin D receptor in osteoblasts. | Xu Z, Greenblatt MB, Yan G, Feng H, Sun J, Lotinun S, Brady N, Baron R, Glimcher LH, Zou W | Nature communications | 28216630 | Nat Commun | 2017 Feb 20 |
| A RUNX2 stabilization pathway mediates physiologic and pathologic bone formation. | Kim JM, Yang YS, Park KH, Ge X, Xu R, Li N, Song M, Chun H, Bok S, Charles JF, Filhol-Cochet O, Boldyreff B, Dinter T, Yu PB, Kon N, Gu W, Takarada T, Greenblatt MB, Shim JH | Nature communications | 32385263 | Nat Commun | 2020 May 8 |
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| Impact of a prospective review program for reference laboratory testing requests. | Greenblatt MB, Nowak JA, Quade CC, Tanasijevic M, Lindeman N, Jarolim P | American journal of clinical pathology | 25873495 | Am J Clin Pathol | 2015 May |
| Systemic Adeno-Associated Virus-Mediated Gene Therapy Prevents the Multiorgan Disorders Associated with Aldehyde Dehydrogenase 2 Deficiency and Chronic Ethanol Ingestion. | Matsumura Y, Li N, Alwaseem H, Pagovich OE, Crystal RG, Greenblatt MB, Stiles KM | Human gene therapy | 31801381 | Hum Gene Ther | 2020 Feb |
| Bone protection by inhibition of microRNA-182. | Inoue K, Deng Z, Chen Y, Giannopoulou E, Xu R, Gong S, Greenblatt MB, Mangala LS, Lopez-Berestein G, Kirsch DG, Sood AK, Zhao L, Zhao B | Nature communications | 30291236 | Nat Commun | 2018 Oct 5 |
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| The ERK MAPK Pathway Is Essential for Skeletal Development and Homeostasis. | Kim JM, Yang YS, Park KH, Oh H, Greenblatt MB, Shim JH | International journal of molecular sciences | 31013682 | Int J Mol Sci | 2019 Apr 12 |
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| Multidimensional Tracking of GPCR Signaling via Peroxidase-Catalyzed Proximity Labeling. | Paek J, Kalocsay M, Staus DP, Wingler L, Pascolutti R, Paulo JA, Gygi SP, Kruse AC | Cell | 28388415 | Cell | 2017 Apr 6 |
| Mapping and engineering the interaction between adiponectin and T-cadherin. | Pascolutti R, Erlandson SC, Burri DJ, Zheng S, Kruse AC | The Journal of biological chemistry | 31915248 | J Biol Chem | 2020 Feb 28 |
| Distinctive Activation Mechanism for Angiotensin Receptor Revealed by a Synthetic Nanobody. | Wingler LM, McMahon C, Staus DP, Lefkowitz RJ, Kruse AC | Cell | 30639100 | Cell | 2019 Jan 24 |
| Cryo-EM structure of the B cell co-receptor CD19 bound to the tetraspanin CD81. | Susa KJ, Rawson S, Kruse AC, Blacklow SC | Science (New York, N.Y.) | 33446559 | Science | 2021 Jan 15 |
| Molecular mechanism of biased signaling in a prototypical G protein-coupled receptor. | Suomivuori CM, Latorraca NR, Wingler LM, Eismann S, King MC, Kleinhenz ALW, Skiba MA, Staus DP, Kruse AC, Lefkowitz RJ, Dror RO | Science (New York, N.Y.) | 32079767 | Science | 2020 Feb 21 |
| Rapid generation of potent antibodies by autonomous hypermutation in yeast. | Wellner A, McMahon C, Gilman MSA, Clements JR, Clark S, Nguyen KM, Ho MH, Hu VJ, Shin JE, Feldman J, Hauser BM, Caradonna TM, Wingler LM, Schmidt AG, Marks DS, Abraham J, Kruse AC, Liu CC | Nature chemical biology | 34168368 | Nat Chem Biol | 2021 Oct |
| Antibodies Expand the Scope of Angiotensin Receptor Pharmacology. | Skiba MA, Sterling SM, Rawson S, Gilman MSA, Xu H, Nemeth GR, Hurley JD, Shen P, Staus DP, Kim J, McMahon C, Lehtinen MK, Wingler LM, Kruse AC | bioRxiv : the preprint server for biology | 37662341 | bioRxiv | 2023 Aug 24 |
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| Synthetic nanobodies as angiotensin receptor blockers. | McMahon C, Staus DP, Wingler LM, Wang J, Skiba MA, Elgeti M, Hubbell WL, Rockman HA, Kruse AC, Lefkowitz RJ | Proceedings of the National Academy of Sciences of the United States of America | 32753386 | Proc Natl Acad Sci U S A | 2020 Aug 18 |
| Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket. | Zimmerman B, Kelly B, McMillan BJ, Seegar TCM, Dror RO, Kruse AC, Blacklow SC | Cell | 27881302 | Cell | 2016 Nov 3 |
| Identification of the gene that codes for the σ(2) receptor. | Alon A, Schmidt HR, Wood MD, Sahn JJ, Martin SF, Kruse AC | Proceedings of the National Academy of Sciences of the United States of America | 28559337 | Proc Natl Acad Sci U S A | 2017 Jul 3 |
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| CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog. | Soto-Perez P, Bisanz JE, Berry JD, Lam KN, Bondy-Denomy J, Turnbaugh PJ | Cell host & microbe | 31492655 | Cell Host Microbe | 2019 Sep 11 |
| How bacteria control the CRISPR-Cas arsenal. | Leon LM, Mendoza SD, Bondy-Denomy J | Current opinion in microbiology | 29169146 | Curr Opin Microbiol | 2018 Apr |
| Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems. | Taylor HN, Laderman E, Armbrust M, Hallmark T, Keiser D, Bondy-Denomy J, Jackson RN | Frontiers in microbiology | 34093491 | Front Microbiol | 2021 |
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| Mobile element warfare via CRISPR and anti-CRISPR in Pseudomonas aeruginosa. | León LM, Park AE, Borges AL, Zhang JY, Bondy-Denomy J | Nucleic acids research | 33544853 | Nucleic Acids Res | 2021 Feb 26 |
| Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements. | Pinilla-Redondo R, Shehreen S, Marino ND, Fagerlund RD, Brown CM, Sørensen SJ, Fineran PC, Bondy-Denomy J | Nature communications | 33159058 | Nat Commun | 2020 Nov 6 |
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| Disabling Cas9 by an anti-CRISPR DNA mimic. | Shin J, Jiang F, Liu JJ, Bray NL, Rauch BJ, Baik SH, Nogales E, Bondy-Denomy J, Corn JE, Doudna JA | Science advances | 28706995 | Sci Adv | 2017 Jul |
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| Lack of Cas13a inhibition by anti-CRISPR proteins from Leptotrichia prophages. | Johnson MC, Hille LT, Kleinstiver BP, Meeske AJ, Bondy-Denomy J | Molecular cell | 35623354 | Mol Cell | 2022 Jun 2 |
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| Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. | Roux S, Krupovic M, Daly RA, Borges AL, Nayfach S, Schulz F, Sharrar A, Matheus Carnevali PB, Cheng JF, Ivanova NN, Bondy-Denomy J, Wrighton KC, Woyke T, Visel A, Kyrpides NC, Eloe-Fadrosh EA | Nature microbiology | 31332386 | Nat Microbiol | 2019 Nov |
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| Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria. | Govindarajan S, Borges A, Karambelkar S, Bondy-Denomy J | Journal of bacteriology | 35389256 | J Bacteriol | 2022 May 17 |
| Quorum sensing controls the Pseudomonas aeruginosa CRISPR-Cas adaptive immune system. | Høyland-Kroghsbo NM, Paczkowski J, Mukherjee S, Broniewski J, Westra E, Bondy-Denomy J, Bassler BL | Proceedings of the National Academy of Sciences of the United States of America | 27849583 | Proc Natl Acad Sci U S A | 2017 Jan 3 |
| The diversity-generating benefits of a prokaryotic adaptive immune system. | van Houte S, Ekroth AK, Broniewski JM, Chabas H, Ashby B, Bondy-Denomy J, Gandon S, Boots M, Paterson S, Buckling A, Westra ER | Nature | 27074511 | Nature | 2016 Apr 21 |
| A Type IV-A CRISPR-Cas System in Pseudomonas aeruginosa Mediates RNA-Guided Plasmid Interference In Vivo. | Crowley VM, Catching A, Taylor HN, Borges AL, Metcalf J, Bondy-Denomy J, Jackson RN | The CRISPR journal | 31809194 | CRISPR J | 2019 Dec |
| Discovery of widespread type I and type V CRISPR-Cas inhibitors. | Marino ND, Zhang JY, Borges AL, Sousa AA, Leon LM, Rauch BJ, Walton RT, Berry JD, Joung JK, Kleinstiver BP, Bondy-Denomy J | Science (New York, N.Y.) | 30190308 | Science | 2018 Oct 12 |
| Temperature-Responsive Competitive Inhibition of CRISPR-Cas9. | Jiang F, Liu JJ, Osuna BA, Xu M, Berry JD, Rauch BJ, Nogales E, Bondy-Denomy J, Doudna JA | Molecular cell | 30595438 | Mol Cell | 2019 Feb 7 |
| CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity. | Marino ND, Pinilla-Redondo R, Bondy-Denomy J | Nucleic acids research | 35670674 | Nucleic Acids Res | 2022 Jun 24 |
| Listeria Phages Induce Cas9 Degradation to Protect Lysogenic Genomes. | Osuna BA, Karambelkar S, Mahendra C, Christie KA, Garcia B, Davidson AR, Kleinstiver BP, Kilcher S, Bondy-Denomy J | Cell host & microbe | 32325050 | Cell Host Microbe | 2020 Jul 8 |
| Critical Anti-CRISPR Locus Repression by a Bi-functional Cas9 Inhibitor. | Osuna BA, Karambelkar S, Mahendra C, Sarbach A, Johnson MC, Kilcher S, Bondy-Denomy J | Cell host & microbe | 32325051 | Cell Host Microbe | 2020 Jul 8 |
| Cas1 and the Csy complex are opposing regulators of Cas2/3 nuclease activity. | Rollins MF, Chowdhury S, Carter J, Golden SM, Wilkinson RA, Bondy-Denomy J, Lander GC, Wiedenheft B | Proceedings of the National Academy of Sciences of the United States of America | 28438998 | Proc Natl Acad Sci U S A | 2017 Jun 27 |
| Protein Inhibitors of CRISPR-Cas9. | Bondy-Denomy J | ACS chemical biology | 29251498 | ACS Chem Biol | 2018 Feb 16 |
| Mortality during Resource Booms and Busts. | Boslett A, Hill E | Journal of environmental economics and management | 36643912 | J Environ Econ Manage | 2022 Sep |
| Rural Light Pollution from Shale Gas Development and Associated Sleep and Subjective Well-Being. | Boslett A, Hill E, Ma L, Zhang L | Resource and energy economics | 36643952 | Resour Energy Econ | 2021 May |
| Shale gas transmission and housing prices. | Boslett A, Hill E | Resource and energy economics | 36620650 | Resour Energy Econ | 2019 Aug |
| Unclassified drug overdose deaths in the opioid crisis: emerging patterns of inequity. | Boslett AJ, Denham A, Hill EL, Adams MCB | Journal of the American Medical Informatics Association : JAMIA | 31034076 | J Am Med Inform Assoc | 2019 Aug 1 |
| Fatal opioid overdoses in the U.S. declined more than reported between 2017 and 2018. | Boslett A, Denham A, Hill E | The American journal of drug and alcohol abuse | 34107224 | Am J Drug Alcohol Abuse | 2021 Nov 2 |
| Using contributing causes of death improves prediction of opioid involvement in unclassified drug overdoses in US death records. | Boslett AJ, Denham A, Hill EL | Addiction (Abingdon, England) | 32106355 | Addiction | 2020 Jul |
| The National COVID Cohort Collaborative: Clinical Characterization and Early Severity Prediction. | Bennett TD, Moffitt RA, Hajagos JG, Amor B, Anand A, Bissell MM, Bradwell KR, Bremer C, Byrd JB, Denham A, DeWitt PE, Gabriel D, Garibaldi BT, Girvin AT, Guinney J, Hill EL, Hong SS, Jimenez H, Kavuluru R, Kostka K, Lehmann HP, Levitt E, Mallipattu SK, Manna A, McMurry JA, Morris M, Muschelli J, Neumann AJ, Palchuk MB, Pfaff ER, Qian Z, Qureshi N, Russell S, Spratt H, Walden A, Williams AE, Wooldridge JT, Yoo YJ, Zhang XT, Zhu RL, Austin CP, Saltz JH, Gersing KR, Haendel MA, Chute CG, N3C Consortium | medRxiv : the preprint server for health sciences | 33469592 | medRxiv | 2021 Jan 23 |
| Unconventional natural gas development and hospitalizations: evidence from Pennsylvania, United States, 2003-2014. | Denham A, Willis M, Zavez A, Hill E | Public health | 30677623 | Public Health | 2019 Mar |
| Associations between Residential Proximity to Oil and Gas Drilling and Term Birth Weight and Small-for-Gestational-Age Infants in Texas: A Difference-in-Differences Analysis. | Willis MD, Hill EL, Boslett A, Kile ML, Carozza SE, Hystad P | Environmental health perspectives | 34287013 | Environ Health Perspect | 2021 Jul |
| Where you drink water: An assessment of the Tennessee, USA public water supply. | Ding KJ, Hornberger G, Hill E, McDonald YJ | Water | 37476080 | Water (Basel) | 2022 Aug 2 |
| Drinking Water Contaminant Concentrations and Birth Outcomes. | DiSalvo RW, Hill EL | Journal of policy analysis and management : [the journal of the Association for Public Policy Analysis and Management] | 38983462 | J Policy Anal Manage | 2024 Spring |
| Social distancing merely stabilized COVID-19 in the United States. | Wagner AB, Hill EL, Ryan SE, Sun Z, Deng G, Bhadane S, Hernandez Martinez V, Wu P, Li D, Anand A, Acharya J, Matteson DS | Stat (International Statistical Institute) | 32837718 | Stat (Int Stat Inst) | 2020 Dec |
| Shale Gas Development and Drinking Water Quality. | Hill E, Ma L | The American economic review | 29430021 | Am Econ Rev | 2017 May |
| Shale gas development and infant health: Evidence from Pennsylvania. | Hill EL | Journal of health economics | 30114565 | J Health Econ | 2018 Sep |
| Associations between residential proximity to oil and gas extraction and hypertensive conditions during pregnancy: a difference-in-differences analysis in Texas, 1996-2009. | Willis MD, Hill EL, Kile ML, Carozza S, Hystad P | International journal of epidemiology | 34897479 | Int J Epidemiol | 2022 May 9 |
| Drinking water, fracking, and infant health. | Hill EL, Ma L | Journal of health economics | 35172241 | J Health Econ | 2022 Mar |
| Unconventional natural gas development and pediatric asthma hospitalizations in Pennsylvania. | Willis MD, Jusko TA, Halterman JS, Hill EL | Environmental research | 29936288 | Environ Res | 2018 Oct |
| Acute myocardial infarction associated with unconventional natural gas development: A natural experiment. | Denham A, Willis MD, Croft DP, Liu L, Hill EL | Environmental research | 33581094 | Environ Res | 2021 Apr |
| Natural gas development, flaring practices and paediatric asthma hospitalizations in Texas. | Willis M, Hystad P, Denham A, Hill E | International journal of epidemiology | 32879945 | Int J Epidemiol | 2021 Jan 23 |
| The fracking concern with water quality. | Hill E, Ma L | Science (New York, N.Y.) | 34413223 | Science | 2021 Aug 20 |
| Accuracy of Valuations of Surgical Procedures in the Medicare Fee Schedule. | Chan DC, Huynh J, Studdert DM | The New England journal of medicine | 30995374 | N Engl J Med | 2019 Apr 18 |
| Selection with Variation in Diagnostic Skill: Evidence from Radiologists. | Chan DC, Gentzkow M, Yu C | The quarterly journal of economics | 35422677 | Q J Econ | 2022 May |
| Mortality among US veterans after emergency visits to Veterans Affairs and other hospitals: retrospective cohort study. | Chan DC, Danesh K, Costantini S, Card D, Taylor L, Studdert DM | BMJ (Clinical research ed.) | 35173019 | BMJ | 2022 Feb 16 |
| Local online learning in recurrent networks with random feedback. | Murray JM | eLife | 31124785 | Elife | 2019 May 24 |
| full-FORCE: A target-based method for training recurrent networks. | DePasquale B, Cueva CJ, Rajan K, Escola GS, Abbott LF | PloS one | 29415041 | PLoS One | 2018 |
| Remembrance of things practiced with fast and slow learning in cortical and subcortical pathways. | Murray JM, Escola GS | Nature communications | 33361766 | Nat Commun | 2020 Dec 23 |
| Thalamic control of cortical dynamics in a model of flexible motor sequencing. | Logiaco L, Abbott LF, Escola S | Cell reports | 34077721 | Cell Rep | 2021 Jun 1 |
| Learning multiple variable-speed sequences in striatum via cortical tutoring. | Murray JM, Escola GS | eLife | 28481200 | Elife | 2017 May 8 |
| Measuring fidelity, feasibility, costs: an implementation evaluation of a cluster-controlled trial of group antenatal care in rural Nepal. | Harsha Bangura A, Nirola I, Thapa P, Citrin D, Belbase B, Bogati B, B K N, Khadka S, Kunwar L, Halliday S, Choudhury N, Schwarz R, Adhikari M, Kalaunee SP, Rising S, Maru D, Maru S | Reproductive health | 31952543 | Reprod Health | 2020 Jan 17 |
| Implementing a quality improvement initiative for the management of chronic obstructive pulmonary disease in rural Nepal. | Mehanni S, Jha D, Kumar A, Choudhury N, Dangal B, Deukmedjian G, Dhungana SK, Gauchan B, Gupta TK, Halliday S, Kalaunee SP, Mahar R, Poudel S, Raut A, Schwarz R, Singh DR, Thapa A, Thapa R, Wong L, Maru D, Schwarz D | BMJ open quality | 31259269 | BMJ Open Qual | 2019 |
| Designing and implementing an integrated non-communicable disease primary care intervention in rural Nepal. | Kumar A, Schwarz D, Acharya B, Agrawal P, Aryal A, Choudhury N, Citrin D, Dangal B, Deukmedjian G, Dhimal M, Dhungana S, Gauchan B, Gupta T, Halliday S, Jha D, Kalaunee SP, Karmacharya B, Kishore S, Koirala B, Kunwar L, Mahar R, Maru S, Mehanni S, Nirola I, Pandey S, Pant B, Pathak M, Poudel S, Rajbhandari I, Raut A, Rimal P, Schwarz R, Shrestha A, Thapa A, Thapa P, Thapa R, Wong L, Maru D | BMJ global health | 31139453 | BMJ Glob Health | 2019 |
| Power, potential, and pitfalls in global health academic partnerships: review and reflections on an approach in Nepal. | Citrin D, Mehanni S, Acharya B, Wong L, Nirola I, Sherchan R, Gauchan B, Karki KB, Singh DR, Shamasunder S, Le P, Schwarz D, Schwarz R, Dangal B, Dhungana SK, Maru S, Mahar R, Thapa P, Raut A, Adhikari M, Basnett I, Kaluanee SP, Deukmedjian G, Halliday S, Maru D | Global health action | 28914185 | Glob Health Action | 2017 |
| Comparing two data collection methods to track vital events in maternal and child health via community health workers in rural Nepal. | Choudhury N, Tiwari A, Wu WJ, Bhandari V, Bhatta L, Bogati B, Citrin D, Halliday S, Khadka S, Marasini N, Pandey S, Ballard M, Rayamazi HJ, Sapkota S, Schwarz R, Sullivan L, Maru D, Thapa A, Maru S | Population health metrics | 35897038 | Popul Health Metr | 2022 Jul 27 |
| Treatment recommendations made by a consultant psychiatrist to improve the quality of care in a collaborative mental health intervention in rural Nepal. | Rimal P, Maru D, Chwastiak L, Agrawal P, Rao D, Swar S, Citrin D, Acharya B | BMC psychiatry | 32024490 | BMC Psychiatry | 2020 Feb 5 |
| Costing Analysis of a Pilot Community Health Worker Program in Rural Nepal. | Nepal P, Schwarz R, Citrin D, Thapa A, Acharya B, Acharya Y, Aryal A, Baum A, Bhandari V, Bhatt L, Bhattarai D, Choudhury N, Dangal B, Dhimal M, Dhungana SK, Gauchan B, Halliday S, Kalaunee SP, Kunwar LB, Maru D, Nirola I, Paudel R, Raut A, Rayamazi HJ, Sapkota S, Schwarz D, Thapa P, Thapa P, Tiwari A, Tuitui R, Walter E, Maru S | Global health, science and practice | 32606093 | Glob Health Sci Pract | 2020 Jun 30 |
| Design and implementation of an affordable, public sector electronic medical record in rural Nepal. | Raut A, Yarbrough C, Singh V, Gauchan B, Citrin D, Verma V, Hawley J, Schwarz D, Harsha Bangura A, Shrestha B, Schwarz R, Adhikari M, Maru D | Journal of innovation in health informatics | 28749321 | J Innov Health Inform | 2017 Jun 23 |
| Community-based postpartum contraceptive counselling in rural Nepal: a mixed-methods evaluation. | Wu WJ, Tiwari A, Choudhury N, Basnett I, Bhatt R, Citrin D, Halliday S, Kunwar L, Maru D, Nirola I, Pandey S, Rayamazi HJ, Sapkota S, Saud S, Thapa A, Goldberg A, Maru S | Sexual and reproductive health matters | 32546070 | Sex Reprod Health Matters | 2020 Dec |
| An integrated community health worker intervention in rural Nepal: a type 2 hybrid effectiveness-implementation study protocol. | Maru S, Nirola I, Thapa A, Thapa P, Kunwar L, Wu WJ, Halliday S, Citrin D, Schwarz R, Basnett I, Kc N, Karki K, Chaudhari P, Maru D | Implementation science : IS | 29598824 | Implement Sci | 2018 Mar 29 |
| Impact of the roll out of comprehensive emergency obstetric care on institutional birth rate in rural Nepal. | Maru S, Bangura AH, Mehta P, Bista D, Borgatta L, Pande S, Citrin D, Khanal S, Banstola A, Maru D | BMC pregnancy and childbirth | 28259150 | BMC Pregnancy Childbirth | 2017 Mar 4 |
| Accountable Care Reforms Improve Women's And Children's Health In Nepal. | Maru D, Maru S, Nirola I, Gonzalez-Smith J, Thoumi A, Nepal P, Chaudary P, Basnett I, Udayakumar K, McClellan M | Health affairs (Project Hope) | 29137510 | Health Aff (Millwood) | 2017 Nov |
| The power of peers: an effectiveness evaluation of a cluster-controlled trial of group antenatal care in rural Nepal. | Thapa P, Bangura AH, Nirola I, Citrin D, Belbase B, Bogati B, Nirmala BK, Khadka S, Kunwar L, Halliday S, Choudhury N, Ozonoff A, Tenpa J, Schwarz R, Adhikari M, Kalaunee SP, Rising S, Maru D, Maru S | Reproductive health | 31640770 | Reprod Health | 2019 Oct 22 |
| Practical issues in the measurement of child survival in health systems trials: experience developing a digital community-based mortality surveillance programme in rural Nepal. | Harsha Bangura A, Ozonoff A, Citrin D, Thapa P, Nirola I, Maru S, Schwarz R, Raut A, Belbase B, Halliday S, Adhikari M, Maru D | BMJ global health | 28588974 | BMJ Glob Health | 2016 |
| Delivering Collaborative Care in Rural Settings: Integrating Remote Teleconsultation and Local Supervision in Rural Nepal. | Swar S, Rimal P, Gauchan B, Maru D, Yang Y, Acharya B | Psychiatric services (Washington, D.C.) | 30220241 | Psychiatr Serv | 2019 Jan 1 |
| Developing and deploying a community healthcare worker-driven, digitally- enabled integrated care system for municipalities in rural Nepal. | Citrin D, Thapa P, Nirola I, Pandey S, Kunwar LB, Tenpa J, Acharya B, Rayamazi H, Thapa A, Maru S, Raut A, Poudel S, Timilsina D, Dhungana SK, Adhikari M, Khanal MN, Pratap Kc N, Acharya B, Karki KB, Singh DR, Bangura AH, Wacksman J, Storisteanu D, Halliday S, Schwarz R, Schwarz D, Choudhury N, Kumar A, Wu WJ, Kalaunee SP, Chaudhari P, Maru D | Healthcare (Amsterdam, Netherlands) | 29880283 | Healthc (Amst) | 2018 Sep |
| An integrated intervention for chronic care management in rural Nepal: protocol of a type 2 hybrid effectiveness-implementation study. | Schwarz D, Dhungana S, Kumar A, Acharya B, Agrawal P, Aryal A, Baum A, Choudhury N, Citrin D, Dangal B, Dhimal M, Gauchan B, Gupta T, Halliday S, Karmacharya B, Kishore S, Koirala B, Kshatriya U, Levine E, Maru S, Rimal P, Sapkota S, Schwarz R, Shrestha A, Thapa A, Maru D | Trials | 31996250 | Trials | 2020 Jan 29 |
| External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali. | Garbern SC, Nelson EJ, Nasrin S, Keita AM, Brintz BJ, Gainey M, Badji H, Nasrin D, Howard J, Taniuchi M, Platts-Mills JA, Kotloff KL, Haque R, Levine AC, Sow SO, Alam NH, Leung DT | eLife | 35137684 | Elife | 2022 Feb 9 |
| Clinical predictors for etiology of acute diarrhea in children in resource-limited settings. | Brintz BJ, Howard JI, Haaland B, Platts-Mills JA, Greene T, Levine AC, Nelson EJ, Pavia AT, Kotloff KL, Leung DT | PLoS neglected tropical diseases | 33035209 | PLoS Negl Trop Dis | 2020 Oct |
| Opportunities to catalyse improved healthcare access in pluralistic systems: a cross-sectional study in Haiti. | Klarman M, Schon J, Cajusma Y, Maples S, Beau de Rochars VEM, Baril C, Nelson EJ | BMJ open | 34810180 | BMJ Open | 2021 Nov 22 |
| High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh. | Flaherty KE, Grembi JA, Ramachandran VV, Haque F, Khatun S, Rahman M, Maples S, Becker TK, Spormann AM, Schoolnik GK, Hryckowian AJ, Nelson EJ | PloS one | 34597302 | PLoS One | 2021 |
| Socioeconomic Determinants of Cipro-floxacin-Resistant Shigella Infections in Bangladeshi Children. | Gruninger RJ, Johnson RA, Das SK, Nelson EJ, Spivak ES, Contreras JR, Faruque ASG, Leung DT | Pathogens & immunity | 28603782 | Pathog Immun | 2017 |
| Determinants of severe dehydration from diarrheal disease at hospital presentation: Evidence from 22 years of admissions in Bangladesh. | Andrews JR, Leung DT, Ahmed S, Malek MA, Ahmed D, Begum YA, Qadri F, Ahmed T, Faruque ASG, Nelson EJ | PLoS neglected tropical diseases | 28448489 | PLoS Negl Trop Dis | 2017 Apr |
| Toxigenic Vibrio cholerae evolution and establishment of reservoirs in aquatic ecosystems. | Mavian C, Paisie TK, Alam MT, Browne C, Beau De Rochars VM, Nembrini S, Cash MN, Nelson EJ, Azarian T, Ali A, Morris JG Jr, Salemi M | Proceedings of the National Academy of Sciences of the United States of America | 32229557 | Proc Natl Acad Sci U S A | 2020 Apr 7 |
| Electronic decision support and diarrhoeal disease guideline adherence (mHDM): a cluster randomised controlled trial. | Khan AI, Mack JA, Salimuzzaman M, Zion MI, Sujon H, Ball RL, Maples S, Rashid MM, Chisti MJ, Sarker SA, Biswas D, Hossin R, Bardosh KL, Begum YA, Ahmed A, Pieri D, Haque F, Rahman M, Levine AC, Qadri F, Flora MS, Gurka MJ, Nelson EJ | The Lancet. Digital health | 33328057 | Lancet Digit Health | 2020 May |
| An ethnographic exploration of diarrheal disease management in public hospitals in Bangladesh: From problems to solutions. | Biswas D, Hossin R, Rahman M, Bardosh KL, Watt MH, Zion MI, Sujon H, Rashid MM, Salimuzzaman M, Flora MS, Qadri F, Khan AI, Nelson EJ | Social science & medicine (1982) | 32712557 | Soc Sci Med | 2020 Sep |
| Implementation of a Pediatric Telemedicine and Medication Delivery Service in a Resource-limited Setting: A Pilot Study for Clinical Safety and Feasibility. | Klarman MB, Flaherty KE, Chi X, Cajusma Y, Capois AC, Vladimir Dofiné MD, Exantus L, Friesen J, Beau de Rochars VM, Baril C, Gurka MJ, Becker TK, Nelson EJ | The Journal of pediatrics | 36528053 | J Pediatr | 2023 Jun |
| Genome-wide association studies reveal distinct genetic correlates and increased heritability of antimicrobial resistance in Vibrio cholerae under anaerobic conditions. | Creasy-Marrazzo A, Saber MM, Kamat M, Bailey LS, Brinkley L, Cato E, Begum Y, Rashid MM, Khan AI, Qadri F, Basso KB, Shapiro BJ, Nelson EJ | Microbial genomics | 36748512 | Microb Genom | 2022 Dec |
| Evaluation of Standard and Mobile Health-Supported Clinical Diagnostic Tools for Assessing Dehydration in Patients with Diarrhea in Rural Bangladesh. | Bilal S, Nelson E, Meisner L, Alam M, Al Amin S, Ashenafi Y, Teegala S, Khan AF, Alam N, Levine A | The American journal of tropical medicine and hygiene | 29761756 | Am J Trop Med Hyg | 2018 Jul |
| Improving Antibiotic Stewardship for Diarrheal Disease With Probability-Based Electronic Clinical Decision Support: A Randomized Crossover Trial. | Nelson EJ, Khan AI, Keita AM, Brintz BJ, Keita Y, Sanogo D, Islam MT, Khan ZH, Rashid MM, Nasrin D, Watt MH, Ahmed SM, Haaland B, Pavia AT, Levine AC, Chao DL, Kotloff KL, Qadri F, Sow SO, Leung DT | JAMA pediatrics | 36036920 | JAMA Pediatr | 2022 Oct 1 |
| Derivation and external validation of a clinical prognostic model identifying children at risk of death following presentation for diarrheal care. | Ahmed SM, Brintz BJ, Talbert A, Ngari M, Pavlinac PB, Platts-Mills JA, Levine AC, Nelson EJ, Walson JL, Kotloff KL, Berkley JA, Leung DT | medRxiv : the preprint server for health sciences | 36798150 | medRxiv | 2023 Feb 10 |
| Evaluation of a Smartphone Decision-Support Tool for Diarrheal Disease Management in a Resource-Limited Setting. | Haque F, Ball RL, Khatun S, Ahmed M, Kache S, Chisti MJ, Sarker SA, Maples SD, Pieri D, Vardhan Korrapati T, Sarnquist C, Federspiel N, Rahman MW, Andrews JR, Rahman M, Nelson EJ | PLoS neglected tropical diseases | 28103233 | PLoS Negl Trop Dis | 2017 Jan |
| Gold Standard Cholera Diagnostics Are Tarnished by Lytic Bacteriophage and Antibiotics. | Nelson EJ, Grembi JA, Chao DL, Andrews JR, Alexandrova L, Rodriguez PH, Ramachandran VV, Sayeed MA, Wamala JF, Debes AK, Sack DA, Hryckowian AJ, Haque F, Khatun S, Rahman M, Chien A, Spormann AM, Schoolnik GK | Journal of clinical microbiology | 32611794 | J Clin Microbiol | 2020 Aug 24 |
| Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions. | Hryckowian AJ, Merrill BD, Porter NT, Van Treuren W, Nelson EJ, Garlena RA, Russell DA, Martens EC, Sonnenburg JL | Cell host & microbe | 32652063 | Cell Host Microbe | 2020 Sep 9 |
| Identification of Widespread Antibiotic Exposure in Patients With Cholera Correlates With Clinically Relevant Microbiota Changes. | Alexandrova L, Haque F, Rodriguez P, Marrazzo AC, Grembi JA, Ramachandran V, Hryckowian AJ, Adams CM, Siddique MSA, Khan AI, Qadri F, Andrews JR, Rahman M, Spormann AM, Schoolnik GK, Chien A, Nelson EJ | The Journal of infectious diseases | 31192364 | J Infect Dis | 2019 Oct 8 |
| Is a Cholera Outbreak Preventable in Post-earthquake Nepal? | Nelson EJ, Andrews JR, Maples S, Barry M, Clemens JD | PLoS neglected tropical diseases | 26270343 | PLoS Negl Trop Dis | 2015 Aug |
| Development and evaluation of a clinical guideline for a paediatric telemedicine service in a low-resource setting. | Klarman MB, Chi X, Cajusma Y, Flaherty KE, Capois AC, Dofiné MDV, Exantus L, Friesen J, Beau de Rochars VM, Becker T, Baril C, Gurka MJ, Nelson EJ | BMJ paediatrics open | 38191203 | BMJ Paediatr Open | 2024 Jan 8 |
| Galectin-9 recognizes and exhibits antimicrobial activity toward microbes expressing blood group-like antigens. | Blenda AV, Kamili NA, Wu SC, Abel WF, Ayona D, Gerner-Smidt C, Ho AD, Benian GM, Cummings RD, Arthur CM, Stowell SR | The Journal of biological chemistry | 35148986 | J Biol Chem | 2022 Apr |
| Antigen Density Dictates Immune Responsiveness following Red Blood Cell Transfusion. | Arthur CM, Patel SR, Smith NH, Bennett A, Kamili NA, Mener A, Gerner-Smidt C, Sullivan HC, Hale JS, Wieland A, Youngblood B, Zimring JC, Hendrickson JE, Stowell SR | Journal of immunology (Baltimore, Md. : 1950) | 28250159 | J Immunol | 2017 Apr 1 |
| Key regulators of galectin-glycan interactions. | Kamili NA, Arthur CM, Gerner-Smidt C, Tafesse E, Blenda A, Dias-Baruffi M, Stowell SR | Proteomics | 27582340 | Proteomics | 2016 Dec |
| Complement Component 3 Negatively Regulates Antibody Response by Modulation of Red Blood Cell Antigen. | Mener A, Arthur CM, Patel SR, Liu J, Hendrickson JE, Stowell SR | Frontiers in immunology | 29942300 | Front Immunol | 2018 |
| Marginal Zone B Cells Induce Alloantibody Formation Following RBC Transfusion. | Patel SR, Gibb DR, Girard-Pierce K, Zhou X, Rodrigues LC, Arthur CM, Bennett AL, Jajosky RP, Fuller M, Maier CL, Zerra PE, Chonat S, Smith NH, Tormey CA, Hendrickson JE, Stowell SR | Frontiers in immunology | 30505302 | Front Immunol | 2018 |
| Examining the Role of Complement in Predicting, Preventing, and Treating Hemolytic Transfusion Reactions. | Arthur CM, Chonat S, Fasano R, Yee MEM, Josephson CD, Roback JD, Stowell SR | Transfusion medicine reviews | 31679762 | Transfus Med Rev | 2019 Oct |
| The Sweet-Side of Leukocytes: Galectins as Master Regulators of Neutrophil Function. | Robinson BS, Arthur CM, Evavold B, Roback E, Kamili NA, Stowell CS, Vallecillo-Zúniga ML, Van Ry PM, Dias-Baruffi M, Cummings RD, Stowell SR | Frontiers in immunology | 31440233 | Front Immunol | 2019 |
| Recipient priming to one RBC alloantigen directly enhances subsequent alloimmunization in mice. | Patel SR, Bennett A, Girard-Pierce K, Maier CL, Chonat S, Arthur CM, Zerra PE, Mener A, Stowell SR | Blood advances | 29365318 | Blood Adv | 2018 Jan 23 |
| Intestinal epithelial glycosylation in homeostasis and gut microbiota interactions in IBD. | Kudelka MR, Stowell SR, Cummings RD, Neish AS | Nature reviews. Gastroenterology & hepatology | 32710014 | Nat Rev Gastroenterol Hepatol | 2020 Oct |
| Fc Gamma Receptors and Complement Component 3 Facilitate Anti-fVIII Antibody Formation. | Zerra PE, Arthur CM, Chonat S, Maier CL, Mener A, Shin S, Allen JWL, Baldwin WH, Cox C, Verkerke H, Jajosky RP, Tormey CA, Meeks SL, Stowell SR | Frontiers in immunology | 32582142 | Front Immunol | 2020 |
| Generation and Use of Recombinant Galectins. | Wu SC, Paul A, Ho A, Patel KR, Allen JWL, Verkerke H, Arthur CM, Stowell SR | Current protocols | 33656274 | Curr Protoc | 2021 Mar |
| Innate immunity against molecular mimicry: Examining galectin-mediated antimicrobial activity. | Arthur CM, Patel SR, Mener A, Kamili NA, Fasano RM, Meyer E, Winkler AM, Sola-Visner M, Josephson CD, Stowell SR | BioEssays : news and reviews in molecular, cellular and developmental biology | 26577077 | Bioessays | 2015 Dec |
| CD8+ T cells mediate antibody-independent platelet clearance in mice. | Arthur CM, Patel SR, Sullivan HC, Winkler AM, Tormey CA, Hendrickson JE, Stowell SR | Blood | 26787734 | Blood | 2016 Apr 7 |
| Antibody-mediated immune suppression by antigen modulation is antigen-specific. | Maier CL, Mener A, Patel SR, Jajosky RP, Bennett AL, Arthur CM, Hendrickson JE, Stowell SR | Blood advances | 30413434 | Blood Adv | 2018 Nov 13 |
| Complement serves as a switch between CD4+ T cell-independent and -dependent RBC antibody responses. | Mener A, Patel SR, Arthur CM, Chonat S, Wieland A, Santhanakrishnan M, Liu J, Maier CL, Jajosky RP, Girard-Pierce K, Bennett A, Zerra PE, Smith NH, Hendrickson JE, Stowell SR | JCI insight | 30429364 | JCI Insight | 2018 Nov 15 |
| Antibody-mediated immunosuppression can result from RBC antigen loss independent of Fcγ receptors in mice. | Mener A, Patel SR, Arthur CM, Stowell SR | Transfusion | 30474857 | Transfusion | 2019 Jan |
| Daratumumab (anti-CD38) induces loss of CD38 on red blood cells. | Sullivan HC, Gerner-Smidt C, Nooka AK, Arthur CM, Thompson L, Mener A, Patel SR, Yee M, Fasano RM, Josephson CD, Kaufman RM, Roback JD, Lonial S, Stowell SR | Blood | 28373263 | Blood | 2017 Jun 1 |
| Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk. | Kudelka MR, Hinrichs BH, Darby T, Moreno CS, Nishio H, Cutler CE, Wang J, Wu H, Zeng J, Wang Y, Ju T, Stowell SR, Nusrat A, Jones RM, Neish AS, Cummings RD | Proceedings of the National Academy of Sciences of the United States of America | 27930307 | Proc Natl Acad Sci U S A | 2016 Dec 20 |
| Nonhuman glycans can regulate anti-factor VIII antibody formation in mice. | Arthur CM, Zerra PE, Shin S, Wang J, Song X, Doering CB, Lollar P, Meeks S, Stowell SR | Blood | 34019619 | Blood | 2022 Mar 3 |
| Full-Length Galectin-3 Is Required for High Affinity Microbial Interactions and Antimicrobial Activity. | Wu SC, Ho AD, Kamili NA, Wang J, Murdock KL, Cummings RD, Arthur CM, Stowell SR | Frontiers in microbiology | 34690972 | Front Microbiol | 2021 |
| ABO blood group antigens and differential glycan expression: Perspective on the evolution of common human enzyme deficiencies. | Jajosky RP, Wu SC, Zheng L, Jajosky AN, Jajosky PG, Josephson CD, Hollenhorst MA, Sackstein R, Cummings RD, Arthur CM, Stowell SR | iScience | 36691627 | iScience | 2023 Jan 20 |
| Galectin-9 Is a Novel Regulator of Epithelial Restitution. | Robinson BS, Saeedi B, Arthur CM, Owens J, Naudin C, Ahmed N, Luo L, Jones R, Neish A, Stowell SR | The American journal of pathology | 32380082 | Am J Pathol | 2020 Aug |
| Targeting altered glycosylation in secreted tumor glycoproteins for broad cancer detection. | Kudelka MR, Gu W, Matsumoto Y, Ju T, Barnes Ii RH, Kardish RJ, Heimburg-Molinaro J, Lehoux S, Zeng J, Cohen C, Robinson BS, Shah KS, Chaikof EL, Stowell SR, Cummings RD | Glycobiology | 37216646 | Glycobiology | 2023 Aug 14 |
| A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface. | Wu H, Shajahan A, Yang JY, Capota E, Wands AM, Arthur CM, Stowell SR, Moremen KW, Azadi P, Kohler JJ | Cell chemical biology | 34331854 | Cell Chem Biol | 2022 Jan 20 |
| Innate immune Galectin-7 specifically targets microbes that decorate themselves in blood group-like antigens. | Wu SC, Kamili NA, Dias-Baruffi M, Josephson CD, Rathgeber MF, Yeung MY, Lane WJ, Wang J, Jan HM, Rakoff-Nahoum S, Cummings RD, Stowell SR, Arthur CM | iScience | 35754739 | iScience | 2022 Jul 15 |
| The role of galectins in immunity and infection. | Liu FT, Stowell SR | Nature reviews. Immunology | 36646848 | Nat Rev Immunol | 2023 Aug |
| Protein glycosylation in cancer. | Stowell SR, Ju T, Cummings RD | Annual review of pathology | 25621663 | Annu Rev Pathol | 2015 |
| Marginal zone B cells mediate a CD4 T-cell-dependent extrafollicular antibody response following RBC transfusion in mice. | Zerra PE, Patel SR, Jajosky RP, Arthur CM, McCoy JW, Allen JWL, Chonat S, Fasano RM, Roback JD, Josephson CD, Hendrickson JE, Stowell SR | Blood | 33876205 | Blood | 2021 Aug 26 |
| Anemia induces gut inflammation and injury in an animal model of preterm infants. | Arthur CM, Nalbant D, Feldman HA, Saeedi BJ, Matthews J, Robinson BS, Kamili NA, Bennett A, Cress GA, Sola-Visner M, Jones RM, Zimmerman MB, Neish AS, Patel RM, Nopoulos P, Georgieff MK, Roback JD, Widness JA, Josephson CD, Stowell SR | Transfusion | 30897226 | Transfusion | 2019 Apr |
| Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature. | Randles A, Draeger EW, Bailey PE | Journal of computational science | 29152011 | J Comput Sci | 2015 Jul |
| Localization of Rolling and Firm-Adhesive Interactions Between Circulating Tumor Cells and the Microvasculature Wall. | Dabagh M, Gounley J, Randles A | Cellular and molecular bioengineering | 32175027 | Cell Mol Bioeng | 2020 Apr |
| The role of adhesive receptor patterns on cell transport in complex microvessels. | Puleri DF, Randles A | Biomechanics and modeling in mechanobiology | 35507242 | Biomech Model Mechanobiol | 2022 Aug |
| Computational Framework to Evaluate the Hydrodynamics of Cell Scaffold Geometries. | Puleri DF, Roychowdhury S, Ames J, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 33018467 | Annu Int Conf IEEE Eng Med Biol Soc | 2020 Jul |
| Computing the ankle-brachial index with parallel computational fluid dynamics. | Gounley J, Draeger EW, Oppelstrup T, Krauss WD, Gunnels JA, Chaudhury R, Nair P, Frakes D, Leopold JA, Randles A | Journal of biomechanics | 30385003 | J Biomech | 2019 Jan 3 |
| A Framework for Comparing Vascular Hemodynamics at Different Points in Time. | Gounley J, Vardhan M, Randles A | Computer physics communications | 30504967 | Comput Phys Commun | 2019 Feb |
| Multivascular networks and functional intravascular topologies within biocompatible hydrogels. | Grigoryan B, Paulsen SJ, Corbett DC, Sazer DW, Fortin CL, Zaita AJ, Greenfield PT, Calafat NJ, Gounley JP, Ta AH, Johansson F, Randles A, Rosenkrantz JE, Louis-Rosenberg JD, Galie PA, Stevens KR, Miller JS | Science (New York, N.Y.) | 31048486 | Science | 2019 May 3 |
| Computational modelling of perivascular-niche dynamics for the optimization of treatment schedules for glioblastoma. | Randles A, Wirsching HG, Dean JA, Cheng YK, Emerson S, Pattwell SS, Holland EC, Michor F | Nature biomedical engineering | 33864039 | Nat Biomed Eng | 2021 Apr |
| Suitability of lattice Boltzmann inlet and outlet boundary conditions for simulating flow in image-derived vasculature. | Feiger B, Vardhan M, Gounley J, Mortensen M, Nair P, Chaudhury R, Frakes D, Randles A | International journal for numerical methods in biomedical engineering | 30838793 | Int J Numer Method Biomed Eng | 2019 Jun |
| Hemodynamic and morphological characteristics of a growing cerebral aneurysm. | Dabagh M, Nair P, Gounley J, Frakes D, Gonzalez LF, Randles A | Neurosurgical focus | 31261117 | Neurosurg Focus | 2019 Jul 1 |
| Propagation pattern for moment representation of the lattice Boltzmann method. | Gounley J, Vardhan M, Draeger EW, Valero-Lara P, Moore SV, Randles A | IEEE transactions on parallel and distributed systems : a publication of the IEEE Computer Society | 35498162 | IEEE Trans Parallel Distrib Syst | 2022 Mar |
| Modeling the effect of patient size on cerebral perfusion during veno-arterial extracorporeal membrane oxygenation. | Feiger B, Jensen CW, Bryner BS, Segars WP, Randles A | Perfusion | 37395266 | Perfusion | 2024 Oct |
| Surgical Modulation of Pulmonary Artery Shear Stress: A Patient-Specific CFD Analysis of the Norwood Procedure. | Chidyagwai SG, Kaplan MS, Jensen CW, Chen JS, Chamberlain RC, Hill KD, Barker PCA, Slesnick TC, Randles A | Cardiovascular engineering and technology | 38459240 | Cardiovasc Eng Technol | 2024 Aug |
| Multi-GPU Immersed Boundary Method Hemodynamics Simulations. | Ames J, Puleri DF, Balogh P, Gounley J, Draeger EW, Randles A | Journal of computational science | 32754287 | J Comput Sci | 2020 Jul |
| Accelerating massively parallel hemodynamic models of coarctation of the aorta using neural networks. | Feiger B, Gounley J, Adler D, Leopold JA, Draeger EW, Chaudhury R, Ryan J, Pathangey G, Winarta K, Frakes D, Michor F, Randles A | Scientific reports | 32528104 | Sci Rep | 2020 Jun 11 |
| Characterization of hemodynamics in anomalous aortic origin of coronary arteries using patient-specific modeling. | Chidyagwai SG, Vardhan M, Kaplan M, Chamberlain R, Barker P, Randles A | Journal of biomechanics | 35063831 | J Biomech | 2022 Feb |
| Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity? | Gounley J, Chaudhury R, Vardhan M, Driscoll M, Pathangey G, Winarta K, Ryan J, Frakes D, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 28269039 | Annu Int Conf IEEE Eng Med Biol Soc | 2016 Aug |
| Numerical simulation of a compound capsule in a constricted microchannel. | Gounley J, Draeger EW, Randles A | Procedia computer science | 28831291 | Procedia Comput Sci | 2017 |
| Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease. | Randles A, Frakes DH, Leopold JA | Trends in biotechnology | 28942268 | Trends Biotechnol | 2017 Nov |
| Rapid Ventilator Splitting During COVID-19 Pandemic Using 3D Printed Devices and Numerical Modeling of 200 Million Patient Specific Air Flow Scenarios. | Bishawi M, Kaplan M, Chidyagwai S, Cappiello J, Cherry A, MacLeod D, Gall K, Evans N, Kim M, Shaha R, Whittle J, Hollidge M, Truskey G, Randles A | Research square | 32818206 | Res Sq | 2020 Aug 12 |
| Non-invasive characterization of complex coronary lesions. | Vardhan M, Gounley J, Chen SJ, Chi EC, Kahn AM, Leopold JA, Randles A | Scientific reports | 33854076 | Sci Rep | 2021 Apr 14 |
| Multiscale modeling of blood flow to assess neurological complications in patients supported by venoarterial extracorporeal membrane oxygenation. | Feiger B, Adebiyi A, Randles A | Computers in biology and medicine | 33333365 | Comput Biol Med | 2021 Feb |
| Investigating the Interaction Between Circulating Tumor Cells and Local Hydrodynamics via Experiment and Simulations. | Pepona M, Balogh P, Puleri DF, Hynes WF, Robertson C, Dubbin K, Alvarado J, Moya ML, Randles A | Cellular and molecular bioengineering | 33184581 | Cell Mol Bioeng | 2020 Oct |
| Determining the impacts of venoarterial extracorporeal membrane oxygenation on cerebral oxygenation using a one-dimensional blood flow simulator. | Feiger B, Kochar A, Gounley J, Bonadonna D, Daneshmand M, Randles A | Journal of biomechanics | 32220425 | J Biomech | 2020 May 7 |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 36523404 | medRxiv | 2022 Dec 6 |
| Ex vivo analysis identifies effective HIV-1 latency-reversing drug combinations. | Laird GM, Bullen CK, Rosenbloom DI, Martin AR, Hill AL, Durand CM, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 25822022 | J Clin Invest | 2015 May |
| Life cycle synchronization is a viral drug resistance mechanism. | Neagu IA, Olejarz J, Freeman M, Rosenbloom DIS, Nowak MA, Hill AL | PLoS computational biology | 29447150 | PLoS Comput Biol | 2018 Feb |
| Chaos synchronization and Nelder-Mead search for parameter estimation in nonlinear pharmacological systems: Estimating tumor antigenicity in a model of immunotherapy. | Pillai N, Craig M, Dokoumetzidis A, Schwartz SL, Bies R, Freedman I | Progress in biophysics and molecular biology | 29928905 | Prog Biophys Mol Biol | 2018 Nov |
| Expanded cellular clones carrying replication-competent HIV-1 persist, wax, and wane. | Wang Z, Gurule EE, Brennan TP, Gerold JM, Kwon KJ, Hosmane NN, Kumar MR, Beg SA, Capoferri AA, Ray SC, Ho YC, Hill AL, Siliciano JD, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 29483265 | Proc Natl Acad Sci U S A | 2018 Mar 13 |
| Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1. | Hill AL, Rosenbloom DI, Fu F, Nowak MA, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 25097264 | Proc Natl Acad Sci U S A | 2014 Sep 16 |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 32577691 | medRxiv | 2021 Jan 15 |
| Mathematical Models of HIV Latency. | Hill AL | Current topics in microbiology and immunology | 29164341 | Curr Top Microbiol Immunol | 2018 |
| Re-evaluating evolution in the HIV reservoir. | Rosenbloom DIS, Hill AL, Laskey SB, Siliciano RF | Nature | 29168805 | Nature | 2017 Nov 22 |
| TLR7 agonists induce transient viremia and reduce the viral reservoir in SIV-infected rhesus macaques on antiretroviral therapy. | Lim SY, Osuna CE, Hraber PT, Hesselgesser J, Gerold JM, Barnes TL, Sanisetty S, Seaman MS, Lewis MG, Geleziunas R, Miller MD, Cihlar T, Lee WA, Hill AL, Whitney JB | Science translational medicine | 29720451 | Sci Transl Med | 2018 May 2 |
| Cooperative adaptation to therapy (CAT) confers resistance in heterogeneous non-small cell lung cancer. | Craig M, Kaveh K, Woosley A, Brown AS, Goldman D, Eton E, Mehta RM, Dhawan A, Arai K, Rahman MM, Chen S, Nowak MA, Goldman A | PLoS computational biology | 31449515 | PLoS Comput Biol | 2019 Aug |
| Population structure across scales facilitates coexistence and spatial heterogeneity of antibiotic-resistant infections. | Krieger MS, Denison CE, Anderson TL, Nowak MA, Hill AL | PLoS computational biology | 32628660 | PLoS Comput Biol | 2020 Jul |
| Dynamics of bed bug infestations and control under disclosure policies. | Xie S, Hill AL, Rehmann CR, Levy MZ | Proceedings of the National Academy of Sciences of the United States of America | 30833386 | Proc Natl Acad Sci U S A | 2019 Mar 26 |
| Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance. | Moreno-Gamez S, Hill AL, Rosenbloom DI, Petrov DA, Nowak MA, Pennings PS | Proceedings of the National Academy of Sciences of the United States of America | 26038564 | Proc Natl Acad Sci U S A | 2015 Jun 2 |
| Real-Time Predictions of Reservoir Size and Rebound Time during Antiretroviral Therapy Interruption Trials for HIV. | Hill AL, Rosenbloom DI, Goldstein E, Hanhauser E, Kuritzkes DR, Siliciano RF, Henrich TJ | PLoS pathogens | 27119536 | PLoS Pathog | 2016 Apr |
| Insufficient Evidence for Rare Activation of Latent HIV in the Absence of Reservoir-Reducing Interventions. | Hill AL, Rosenbloom DI, Siliciano JD, Siliciano RF | PLoS pathogens | 27560936 | PLoS Pathog | 2016 Aug |
| Crowding and the shape of COVID-19 epidemics. | Rader B, Scarpino SV, Nande A, Hill AL, Adlam B, Reiner RC, Pigott DM, Gutierrez B, Zarebski AE, Shrestha M, Brownstein JS, Castro MC, Dye C, Tian H, Pybus OG, Kraemer MUG | Nature medicine | 33020651 | Nat Med | 2020 Dec |
| A Blueprint for Identifying Phenotypes and Drug Targets in Complex Disorders with Empirical Dynamics. | Krieger MS, Moreau JM, Zhang H, Chien M, Zehnder JL, Craig M | Patterns (New York, N.Y.) | 33336196 | Patterns (N Y) | 2020 Dec 11 |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | Epidemics | 37556994 | Epidemics | 2023 Sep |
| Vaccine failure mode determines population-level impact of vaccination campaigns during epidemics. | Lee DI, Nande A, Anderson TL, Levy MZ, Hill AL | Journal of the Royal Society, Interface | 39965640 | J R Soc Interface | 2025 Feb |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe A, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 33140067 | medRxiv | 2021 Jan 19 |
| An upper bound for the half-removal time of neutrophils from circulation. | Craig M, Humphries AR, Mackey MC | Blood | 27578816 | Blood | 2016 Oct 13 |
| Evolution and emergence of infectious diseases in theoretical and real-world networks. | Leventhal GE, Hill AL, Nowak MA, Bonhoeffer S | Nature communications | 25592476 | Nat Commun | 2015 Jan 16 |
| Development of an oral once-weekly drug delivery system for HIV antiretroviral therapy. | Kirtane AR, Abouzid O, Minahan D, Bensel T, Hill AL, Selinger C, Bershteyn A, Craig M, Mo SS, Mazdiyasni H, Cleveland C, Rogner J, Lee YL, Booth L, Javid F, Wu SJ, Grant T, Bellinger AM, Nikolic B, Hayward A, Wood L, Eckhoff PA, Nowak MA, Langer R, Traverso G | Nature communications | 29317618 | Nat Commun | 2018 Jan 9 |
| Ad26/MVA therapeutic vaccination with TLR7 stimulation in SIV-infected rhesus monkeys. | Borducchi EN, Cabral C, Stephenson KE, Liu J, Abbink P, Ng'ang'a D, Nkolola JP, Brinkman AL, Peter L, Lee BC, Jimenez J, Jetton D, Mondesir J, Mojta S, Chandrashekar A, Molloy K, Alter G, Gerold JM, Hill AL, Lewis MG, Pau MG, Schuitemaker H, Hesselgesser J, Geleziunas R, Kim JH, Robb ML, Michael NL, Barouch DH | Nature | 27841870 | Nature | 2016 Dec 8 |
| Insight into treatment of HIV infection from viral dynamics models. | Hill AL, Rosenbloom DIS, Nowak MA, Siliciano RF | Immunological reviews | 30129208 | Immunol Rev | 2018 Sep |
| Designing and Interpreting Limiting Dilution Assays: General Principles and Applications to the Latent Reservoir for Human Immunodeficiency Virus-1. | Rosenbloom DI, Elliott O, Hill AL, Henrich TJ, Siliciano JM, Siliciano RF | Open forum infectious diseases | 26478893 | Open Forum Infect Dis | 2015 Dec |
| Towards Quantitative Systems Pharmacology Models of Chemotherapy-Induced Neutropenia. | Craig M | CPT: pharmacometrics & systems pharmacology | 28418603 | CPT Pharmacometrics Syst Pharmacol | 2017 May |
| Modeling HIV persistence and cure studies. | Hill AL | Current opinion in HIV and AIDS | 29916846 | Curr Opin HIV AIDS | 2018 Sep |
| A Systematic Review of Coronavirus Disease 2019 Vaccine Efficacy and Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Disease. | Higdon MM, Wahl B, Jones CB, Rosen JG, Truelove SA, Baidya A, Nande AA, ShamaeiZadeh PA, Walter KK, Feikin DR, Patel MK, Deloria Knoll M, Hill AL | Open forum infectious diseases | 35611346 | Open Forum Infect Dis | 2022 Jun |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | PLoS computational biology | 33534808 | PLoS Comput Biol | 2021 Feb |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe AH, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | Nature communications | 33859196 | Nat Commun | 2021 Apr 15 |
| Antigen-driven clonal selection shapes the persistence of HIV-1-infected CD4+ T cells in vivo. | Simonetti FR, Zhang H, Soroosh GP, Duan J, Rhodehouse K, Hill AL, Beg SA, McCormick K, Raymond HE, Nobles CL, Everett JK, Kwon KJ, White JA, Lai J, Margolick JB, Hoh R, Deeks SG, Bushman FD, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 33301425 | J Clin Invest | 2021 Feb 1 |
| Health Effects of Household Solid Fuel Use: Findings from 11 Countries within the Prospective Urban and Rural Epidemiology Study. | Hystad P, Duong M, Brauer M, Larkin A, Arku R, Kurmi OP, Fan WQ, Avezum A, Azam I, Chifamba J, Dans A, du Plessis JL, Gupta R, Kumar R, Lanas F, Liu Z, Lu Y, Lopez-Jaramillo P, Mony P, Mohan V, Mohan D, Nair S, Puoane T, Rahman O, Lap AT, Wang Y, Wei L, Yeates K, Rangarajan S, Teo K, Yusuf S, [on behalf of Prospective Urban and Rural Epidemiological (PURE) Study investigators] | Environmental health perspectives | 31067132 | Environ Health Perspect | 2019 May |
| Analysis of black carbon on filters by image-based reflectance. | Jeronimo M, Stewart Q, Weakley AT, Giacomo J, Zhang X, Hyslop N, Dillner AM, Shupler M, Brauer M | Atmospheric environment (Oxford, England : 1994) | 32095102 | Atmos Environ (1994) | 2020 Feb 15 |
| Personal and household PM(2.5) and black carbon exposure measures and respiratory symptoms in 8 low- and middle-income countries. | Wang Y, Shupler M, Birch A, Chu YL, Jeronimo M, Rangarajan S, Mustaha M, Heenan L, Seron P, Saavedra N, Oliveros MJ, Lopez-Jaramillo P, Camacho PA, Otero J, Perez-Mayorga M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Liu Z, Cheng X, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, Hystad P, PURE-AIR study investigators | Environmental research | 35526584 | Environ Res | 2022 Sep |
| Towards Personal Exposures: How Technology Is Changing Air Pollution and Health Research. | Larkin A, Hystad P | Current environmental health reports | 28983874 | Curr Environ Health Rep | 2017 Dec |
| Elevated blood pressure and household solid fuel use in premenopausal women: Analysis of 12 Demographic and Health Surveys (DHS) from 10 countries. | Arku RE, Ezzati M, Baumgartner J, Fink G, Zhou B, Hystad P, Brauer M | Environmental research | 29107891 | Environ Res | 2018 Jan |
| Associations of outdoor fine particulate air pollution and cardiovascular disease in 157 436 individuals from 21 high-income, middle-income, and low-income countries (PURE): a prospective cohort study. | Hystad P, Larkin A, Rangarajan S, AlHabib KF, Avezum Á, Calik KBT, Chifamba J, Dans A, Diaz R, du Plessis JL, Gupta R, Iqbal R, Khatib R, Kelishadi R, Lanas F, Liu Z, Lopez-Jaramillo P, Nair S, Poirier P, Rahman O, Rosengren A, Swidan H, Tse LA, Wei L, Wielgosz A, Yeates K, Yusoff K, Zatoński T, Burnett R, Yusuf S, Brauer M | The Lancet. Planetary health | 32559440 | Lancet Planet Health | 2020 Jun |
| Household, Community, Sub-National and Country-level Predictors of Primary Cooking Fuel Switching in Nine Countries from the PURE Study. | Shupler M, Hystad P, Gustafson P, Rangarajan S, Mushtaha M, Jayachtria KG, Mony PK, Mohan D, Kumar P, Lakshmi P, Sagar V, Gupta R, Mohan I, Nair S, Varma RP, Li W, Hu B, You K, Ncube T, Ncube B, Chifamba J, West N, Yeates K, Iqbal R, Khawaja R, Yusuf R, Khan A, Seron P, Lanas F, Lopez-Jaramillo P, Camacho PA, Puoane T, Yusuf S, Brauer M | Environmental research letters : ERL [Web site] | 33777170 | Environ Res Lett | 2019 Aug |
| Household and personal air pollution exposure measurements from 120 communities in eight countries: results from the PURE-AIR study. | Shupler M, Hystad P, Birch A, Miller-Lionberg D, Jeronimo M, Arku RE, Chu YL, Mushtaha M, Heenan L, Rangarajan S, Seron P, Lanas F, Cazor F, Lopez-Jaramillo P, Camacho PA, Perez M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Hu B, Liu X, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, PURE-AIR study | The Lancet. Planetary health | 33038319 | Lancet Planet Health | 2020 Oct |
| Global Land Use Regression Model for Nitrogen Dioxide Air Pollution. | Larkin A, Geddes JA, Martin RV, Xiao Q, Liu Y, Marshall JD, Brauer M, Hystad P | Environmental science & technology | 28520422 | Environ Sci Technol | 2017 Jun 20 |
| Interaction of Depression and Unhealthy Diets on the Risk of Cardiovascular Diseases and All-Cause Mortality in the Chinese Population: A PURE Cohort Substudy. | Lang X, Liu Z, Islam S, Han G, Rangarajan S, Tse LA, Mushtaha M, Wang J, Hu L, Qiang D, Zhu Y, Yusuf S, Lin Y, Hu B, On Behalf Of The Pure-China Investigators | Nutrients | 36501202 | Nutrients | 2022 Dec 5 |
| Adverse health impacts of cooking with kerosene: A multi-country analysis within the Prospective Urban and Rural Epidemiology Study. | Arku RE, Brauer M, Duong M, Wei L, Hu B, Ah Tse L, Mony PK, Lakshmi PVM, Pillai RK, Mohan V, Yeates K, Kruger L, Rangarajan S, Koon T, Yusuf S, Hystad P, PURE (Prospective Urban and Rural Epidemiological) Study investigators | Environmental research | 32798956 | Environ Res | 2020 Sep |
| Modifiable risk factors, cardiovascular disease, and mortality in 155 722 individuals from 21 high-income, middle-income, and low-income countries (PURE): a prospective cohort study. | Yusuf S, Joseph P, Rangarajan S, Islam S, Mente A, Hystad P, Brauer M, Kutty VR, Gupta R, Wielgosz A, AlHabib KF, Dans A, Lopez-Jaramillo P, Avezum A, Lanas F, Oguz A, Kruger IM, Diaz R, Yusoff K, Mony P, Chifamba J, Yeates K, Kelishadi R, Yusufali A, Khatib R, Rahman O, Zatonska K, Iqbal R, Wei L, Bo H, Rosengren A, Kaur M, Mohan V, Lear SA, Teo KK, Leong D, O'Donnell M, McKee M, Dagenais G | Lancet (London, England) | 31492503 | Lancet | 2020 Mar 7 |
| Air pollution health impacts: the knowns and unknowns for reliable global burden calculations. | Hystad P, Yusuf S, Brauer M | Cardiovascular research | 32267925 | Cardiovasc Res | 2020 Sep 1 |
| Multinational prediction of household and personal exposure to fine particulate matter (PM(2.5)) in the PURE cohort study. | Shupler M, Hystad P, Birch A, Chu YL, Jeronimo M, Miller-Lionberg D, Gustafson P, Rangarajan S, Mustaha M, Heenan L, Seron P, Lanas F, Cazor F, Jose Oliveros M, Lopez-Jaramillo P, Camacho PA, Otero J, Perez M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Liu Z, Wu S, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, PURE-AIR study investigators | Environment international | 34915352 | Environ Int | 2022 Jan 15 |
| Long-term exposure to outdoor and household air pollution and blood pressure in the Prospective Urban and Rural Epidemiological (PURE) study. | Arku RE, Brauer M, Ahmed SH, AlHabib KF, Avezum Á, Bo J, Choudhury T, Dans AM, Gupta R, Iqbal R, Ismail N, Kelishadi R, Khatib R, Koon T, Kumar R, Lanas F, Lear SA, Wei L, Lopez-Jaramillo P, Mohan V, Poirier P, Puoane T, Rangarajan S, Rosengren A, Soman B, Caklili OT, Yang S, Yeates K, Yin L, Yusoff K, Zatoński T, Yusuf S, Hystad P | Environmental pollution (Barking, Essex : 1987) | 32146361 | Environ Pollut | 2020 Jul |
| Urbanization and physical activity in the global Prospective Urban and Rural Epidemiology study. | Boakye K, Bovbjerg M, Schuna J Jr, Branscum A, Varma RP, Ismail R, Barbarash O, Dominguez J, Altuntas Y, Anjana RM, Yusuf R, Kelishadi R, Lopez-Jaramillo P, Iqbal R, Serón P, Rosengren A, Poirier P, Lakshmi PVM, Khatib R, Zatonska K, Hu B, Yin L, Wang C, Yeates K, Chifamba J, Alhabib KF, Avezum Á, Dans A, Lear SA, Yusuf S, Hystad P | Scientific reports | 36609613 | Sci Rep | 2023 Jan 6 |
| Characterizing exposure to household air pollution within the Prospective Urban Rural Epidemiology (PURE) study. | Arku RE, Birch A, Shupler M, Yusuf S, Hystad P, Brauer M | Environment international | 29567495 | Environ Int | 2018 May |
| Relationships between Changes in Urban Characteristics and Air Quality in East Asia from 2000 to 2010. | Larkin A, van Donkelaar A, Geddes JA, Martin RV, Hystad P | Environmental science & technology | 27442110 | Environ Sci Technol | 2016 Sep 6 |
| Workflow for Comparison of Chemical and Biological Metrics of Filter Collected PM(2.5). | Roper C, Perez A, Barrett D, Hystad P, Massey Simonich SL, Tanguay RL | Atmospheric environment (Oxford, England : 1994) | 32313426 | Atmos Environ (1994) | 2020 Apr 1 |
| Household Air Pollution and Adult Lung Function Change, Respiratory Disease, and Mortality across Eleven Low- and Middle-Income Countries from the PURE Study. | Wang Y, Duong M, Brauer M, Rangarajan S, Dans A, Lanas F, Lopez-Jaramillo P, Puoane T, Yeates K, Chifamba J, Yusuf R, Liu Z, Li Y, Tse LA, Mohan D, Gupta R, Nair S, Lakshmi P, Iqbal R, Anto T, Yusuf S, Hystad P | Environmental health perspectives | 37126654 | Environ Health Perspect | 2023 Apr |
| Brain Imaging and Blood Biomarker Abnormalities in Children With Autosomal Dominant Alzheimer Disease: A Cross-Sectional Study. | Quiroz YT, Schultz AP, Chen K, Protas HD, Brickhouse M, Fleisher AS, Langbaum JB, Thiyyagura P, Fagan AM, Shah AR, Muniz M, Arboleda-Velasquez JF, Munoz C, Garcia G, Acosta-Baena N, Giraldo M, Tirado V, Ramírez DL, Tariot PN, Dickerson BC, Sperling RA, Lopera F, Reiman EM | JAMA neurology | 26121081 | JAMA Neurol | 2015 Aug |
| Striatal amyloid is associated with tauopathy and memory decline in familial Alzheimer's disease. | Hanseeuw BJ, Lopera F, Sperling RA, Norton DJ, Guzman-Velez E, Baena A, Pardilla-Delgado E, Schultz AP, Gatchel J, Jin D, Chen K, Reiman EM, Johnson KA, Quiroz YT | Alzheimer's research & therapy | 30717814 | Alzheimers Res Ther | 2019 Feb 4 |
| Resistance to autosomal dominant Alzheimer's disease in an APOE3 Christchurch homozygote: a case report. | Arboleda-Velasquez JF, Lopera F, O'Hare M, Delgado-Tirado S, Marino C, Chmielewska N, Saez-Torres KL, Amarnani D, Schultz AP, Sperling RA, Leyton-Cifuentes D, Chen K, Baena A, Aguillon D, Rios-Romenets S, Giraldo M, Guzmán-Vélez E, Norton DJ, Pardilla-Delgado E, Artola A, Sanchez JS, Acosta-Uribe J, Lalli M, Kosik KS, Huentelman MJ, Zetterberg H, Blennow K, Reiman RA, Luo J, Chen Y, Thiyyagura P, Su Y, Jun GR, Naymik M, Gai X, Bootwalla M, Ji J, Shen L, Miller JB, Kim LA, Tariot PN, Johnson KA, Reiman EM, Quiroz YT | Nature medicine | 31686034 | Nat Med | 2019 Nov |
| Associations between subregional thalamic volume and brain pathology in autosomal dominant Alzheimer's disease. | Pardilla-Delgado E, Torrico-Teave H, Sanchez JS, Ramirez-Gomez LA, Baena A, Bocanegra Y, Vila-Castelar C, Fox-Fuller JT, Guzmán-Vélez E, Martínez J, Alvarez S, Ochoa-Escudero M, Lopera F, Quiroz YT | Brain communications | 34095834 | Brain Commun | 2021 |
| Examining Sex Differences in Markers of Cognition and Neurodegeneration in Autosomal Dominant Alzheimer's Disease: Preliminary Findings from the Colombian Alzheimer's Prevention Initiative Biomarker Study. | Vila-Castelar C, Guzmán-Vélez E, Pardilla-Delgado E, Buckley RF, Bocanegra Y, Baena A, Fox-Fuller JT, Tirado V, Muñoz C, Giraldo M, Acosta-Baena N, Rios-Romenets S, Langbaum JB, Tariot PN, Lopera F, Reiman EM, Quiroz YT | Journal of Alzheimer's disease : JAD | 32925067 | J Alzheimers Dis | 2020 |
| Visual working memory for semantically related objects in healthy adults. | García-Magariño I, Fox-Fuller JT, Palacios-Navarro G, Baena A, Quiroz YT | Revista de neurologia | 33034365 | Rev Neurol | 2020 Oct 16 |
| Plasma neurofilament light chain in the presenilin 1 E280A autosomal dominant Alzheimer's disease kindred: a cross-sectional and longitudinal cohort study. | Quiroz YT, Zetterberg H, Reiman EM, Chen Y, Su Y, Fox-Fuller JT, Garcia G, Villegas A, Sepulveda-Falla D, Villada M, Arboleda-Velasquez JF, Guzmán-Vélez E, Vila-Castelar C, Gordon BA, Schultz SA, Protas HD, Ghisays V, Giraldo M, Tirado V, Baena A, Munoz C, Rios-Romenets S, Tariot PN, Blennow K, Lopera F | The Lancet. Neurology | 32470423 | Lancet Neurol | 2020 Jun |
| Associative memory and in vivo brain pathology in asymptomatic presenilin-1 E280A carriers. | Guzmán-Vélez E, Martínez J, Papp K, Baena A, Vila-Castelar C, Artola A, Schultz AP, Bocanegra Y, Sanchez J, Rentz D, Tariot PN, Reiman EM, Sperling R, Johnson KA, Lopera F, Quiroz YT | Neurology | 32611637 | Neurology | 2020 Sep 8 |
| Consideration of sex and gender in Alzheimer's disease and related disorders from a global perspective. | Mielke MM, Aggarwal NT, Vila-Castelar C, Agarwal P, Arenaza-Urquijo EM, Brett B, Brugulat-Serrat A, DuBose LE, Eikelboom WS, Flatt J, Foldi NS, Franzen S, Gilsanz P, Li W, McManus AJ, van Lent DM, Milani SA, Shaaban CE, Stites SD, Sundermann E, Suryadevara V, Trani JF, Turner AD, Vonk JMJ, Quiroz YT, Babulal GM, Diversity and Disparity Professional Interest Area Sex and Gender Special Interest Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35394117 | Alzheimers Dement | 2022 Dec |
| Waning locus coeruleus integrity precedes cortical tau accrual in preclinical autosomal dominant Alzheimer's disease. | Jacobs HIL, Becker JA, Kwong K, Munera D, Ramirez-Gomez L, Engels-Domínguez N, Sanchez JS, Vila-Castelar C, Baena A, Sperling RA, Johnson KA, Lopera F, Quiroz YT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35298083 | Alzheimers Dement | 2023 Jan |
| Association Between Visual Memory and In Vivo Amyloid and Tau Pathology in Preclinical Autosomal Dominant Alzheimer's Disease. | Bocanegra Y, Fox-Fuller JT, Baena A, Guzmán-Vélez E, Vila-Castelar C, Martínez J, Torrico-Teave H, Lopera F, Quiroz YT | Journal of the International Neuropsychological Society : JINS | 32762790 | J Int Neuropsychol Soc | 2021 Jan |
| Examining Cognitive Decline Across Black and White Participants in the Harvard Aging Brain Study. | Amariglio RE, Buckley RF, Rabin JS, Papp KV, Quiroz YT, Mormino EC, Sparks KP, Johnson KA, Rentz DM, Sperling RA | Journal of Alzheimer's disease : JAD | 32417775 | J Alzheimers Dis | 2020 |
| Genetic origin of a large family with a novel PSEN1 mutation (Ile416Thr). | Ramirez Aguilar L, Acosta-Uribe J, Giraldo MM, Moreno S, Baena A, Alzate D, Cuastumal R, Aguillón D, Madrigal L, Saldarriaga A, Navarro A, Garcia GP, Aguirre-Acevedo DC, Geier EG, Cochran JN, Quiroz YT, Myers RM, Yokoyama JS, Kosik KS, Lopera F | Alzheimer's & dementia : the journal of the Alzheimer's Association | 30745123 | Alzheimers Dement | 2019 May |
| Associations between plasma neurofilament light, in vivo brain pathology, and cognition in non-demented individuals with autosomal-dominant Alzheimer's disease. | Guzmán-Vélez E, Zetterberg H, Fox-Fuller JT, Vila-Castelar C, Sanchez JS, Baena A, Garcia-Ospina G, Aguillon D, Pardilla-Delgado E, Gatchel JR, Sperling RA, Johnson K, Reiman EM, Blennow K, Lopera F, Quiroz YT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 33527648 | Alzheimers Dement | 2021 May |
| Global Cardiovascular Risk Profile and Cerebrovascular Abnormalities in Presymptomatic Individuals with CADASIL or Autosomal Dominant Alzheimer's Disease. | Schoemaker D, Velilla-Jimenez L, Zuluaga Y, Baena A, Ospina C, Bocanegra Y, Alvarez S, Ochoa-Escudero M, Guzmán-Vélez E, Martinez J, Lopera F, Arboleda-Velasquez JF, Quiroz YT | Journal of Alzheimer's disease : JAD | 34092645 | J Alzheimers Dis | 2021 |
| Neuroticism Is Associated with Tau Pathology in Cognitively Unimpaired Individuals with Autosomal Dominant Alzheimer's Disease. | Baena A, Bocanegra Y, Torres V, Vila-Castelar C, Guzmán-Vélez E, Fox-Fuller JT, Gatchel JR, Sánchez J, Pluim CF, Ramirez-Gómez L, Martínez J, Pineda D, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 34219716 | J Alzheimers Dis | 2021 |
| Cortical thickness across the lifespan in a Colombian cohort with autosomal-dominant Alzheimer's disease: A cross-sectional study. | Fox-Fuller JT, Torrico-Teave H, d'Oleire Uquillas F, Chen K, Su Y, Chen Y, Brickhouse M, Sanchez JS, Aguero C, Jacobs HIL, Hampton O, Guzmán-Vélez E, Vila-Castelar C, Aguirre-Acevedo DC, Baena A, Artola A, Martinez J, Pluim CF, Alvarez S, Ochoa-Escudero M, Reiman EM, Sperling RA, Lopera F, Johnson KA, Dickerson BC, Quiroz YT | Alzheimer's & dementia (Amsterdam, Netherlands) | 34541287 | Alzheimers Dement (Amst) | 2021 |
| The Latin American Spanish version of the Face-Name Associative Memory Exam is sensitive to cognitive and pathological changes in preclinical autosomal dominant Alzheimer's disease. | Vila-Castelar C, Muñoz N, Papp KV, Amariglio RE, Baena A, Guzmán-Vélez E, Bocanegra Y, Sanchez JS, Reiman EM, Johnson KA, Sperling RA, Lopera F, Rentz DM, Quiroz YT | Alzheimer's research & therapy | 32912283 | Alzheimers Res Ther | 2020 Sep 10 |
| Longitudinal amyloid and tau accumulation in autosomal dominant Alzheimer's disease: findings from the Colombia-Boston (COLBOS) biomarker study. | Sanchez JS, Hanseeuw BJ, Lopera F, Sperling RA, Baena A, Bocanegra Y, Aguillon D, Guzmán-Vélez E, Pardilla-Delgado E, Ramirez-Gomez L, Vila-Castelar C, Martinez JE, Fox-Fuller JT, Ramos C, Ochoa-Escudero M, Alvarez S, Jacobs HIL, Schultz AP, Gatchel JR, Becker JA, Katz SR, Mayblyum DV, Price JC, Reiman EM, Johnson KA, Quiroz YT | Alzheimer's research & therapy | 33451357 | Alzheimers Res Ther | 2021 Jan 15 |
| Perspectives on ethnic and racial disparities in Alzheimer's disease and related dementias: Update and areas of immediate need. | Babulal GM, Quiroz YT, Albensi BC, Arenaza-Urquijo E, Astell AJ, Babiloni C, Bahar-Fuchs A, Bell J, Bowman GL, Brickman AM, Chételat G, Ciro C, Cohen AD, Dilworth-Anderson P, Dodge HH, Dreux S, Edland S, Esbensen A, Evered L, Ewers M, Fargo KN, Fortea J, Gonzalez H, Gustafson DR, Head E, Hendrix JA, Hofer SM, Johnson LA, Jutten R, Kilborn K, Lanctôt KL, Manly JJ, Martins RN, Mielke MM, Morris MC, Murray ME, Oh ES, Parra MA, Rissman RA, Roe CM, Santos OA, Scarmeas N, Schneider LS, Schupf N, Sikkes S, Snyder HM, Sohrabi HR, Stern Y, Strydom A, Tang Y, Terrera GM, Teunissen C, Melo van Lent D, Weinborn M, Wesselman L, Wilcock DM, Zetterberg H, O'Bryant SE, International Society to Advance Alzheimer's Research and Treatment, Alzheimer's Association | Alzheimer's & dementia : the journal of the Alzheimer's Association | 30555031 | Alzheimers Dement | 2019 Feb |
| APOE Christchurch-mimetic therapeutic antibody reduces APOE-mediated toxicity and tau phosphorylation. | Marino C, Perez-Corredor P, O'Hare M, Heuer A, Chmielewska N, Gordon H, Chandrahas AS, Gonzalez-Buendia L, Delgado-Tirado S, Doan TH, Vanderleest TE, Arevalo-Alquichire S, Obar RA, Ortiz-Cordero C, Villegas A, Sepulveda-Falla D, Kim LA, Lopera F, Mahley R, Huang Y, Quiroz YT, Arboleda-Velasquez JF | Alzheimer's & dementia : the journal of the Alzheimer's Association | 37791598 | Alzheimers Dement | 2024 Feb |
| Memory for Semantically Related Objects Differentiates Cognitively Unimpaired Autosomal Dominant Mutation Carriers from Non-Carrier Family Members. | Fox-Fuller JT, Martinez JE, Baena A, Londono N, Munera D, Noriega D, Vila-Castelar C, Aduen PA, Lopera F, Cronin-Golomb A, Quiroz YT | The journal of prevention of Alzheimer's disease | 36946459 | J Prev Alzheimers Dis | 2023 |
| Effect of apolipoprotein genotype and educational attainment on cognitive function in autosomal dominant Alzheimer's disease. | Langella S, Barksdale NG, Vasquez D, Aguillon D, Chen Y, Su Y, Acosta-Baena N, Acosta-Uribe J, Baena AY, Garcia-Ospina G, Giraldo-Chica M, Tirado V, Muñoz C, Ríos-Romenets S, Guzman-Martínez C, Oliveira G, Yang HS, Vila-Castelar C, Pruzin JJ, Ghisays V, Arboleda-Velasquez JF, Kosik KS, Reiman EM, Lopera F, Quiroz YT | Nature communications | 37612284 | Nat Commun | 2023 Aug 23 |
| APOE3 Christchurch modulates β-catenin/Wnt signaling in iPS cell-derived cerebral organoids from Alzheimer's cases. | Perez-Corredor P, Vanderleest TE, Vacano GN, Sanchez JS, Villalba-Moreno ND, Marino C, Krasemann S, Mendivil-Perez MA, Aguillón D, Jiménez-Del-Río M, Baena A, Sepulveda-Falla D, Lopera F, Quiroz YT, Arboleda-Velasquez JF, Mazzarino RC | Frontiers in molecular neuroscience | 38571814 | Front Mol Neurosci | 2024 |
| The cortical origin and initial spread of medial temporal tauopathy in Alzheimer's disease assessed with positron emission tomography. | Sanchez JS, Becker JA, Jacobs HIL, Hanseeuw BJ, Jiang S, Schultz AP, Properzi MJ, Katz SR, Beiser A, Satizabal CL, O'Donnell A, DeCarli C, Killiany R, El Fakhri G, Normandin MD, Gómez-Isla T, Quiroz YT, Rentz DM, Sperling RA, Seshadri S, Augustinack J, Price JC, Johnson KA | Science translational medicine | 33472953 | Sci Transl Med | 2021 Jan 20 |
| Retinal Imaging Findings in Carriers With PSEN1-Associated Early-Onset Familial Alzheimer Disease Before Onset of Cognitive Symptoms. | Armstrong GW, Kim LA, Vingopoulos F, Park JY, Garg I, Kasetty M, Silverman RF, Zeng R, Douglas VP, Lopera F, Baena A, Giraldo M, Norton D, Cronin-Golomb A, Arboleda-Velasquez JF, Quiroz YT, Miller JB | JAMA ophthalmology | 33180114 | JAMA Ophthalmol | 2021 Jan 1 |
| Cognitive Decline in a Colombian Kindred With Autosomal Dominant Alzheimer Disease: A Retrospective Cohort Study. | Aguirre-Acevedo DC, Lopera F, Henao E, Tirado V, Muñoz C, Giraldo M, Bangdiwala SI, Reiman EM, Tariot PN, Langbaum JB, Quiroz YT, Jaimes F | JAMA neurology | 26902171 | JAMA Neurol | 2016 Apr |
| Normative data stratified by age and education for a Spanish neuropsychological test battery: Results from the Colombian Alzheimer's prevention initiative registry. | Torres VL, Vila-Castelar C, Bocanegra Y, Baena A, Guzmán-Vélez E, Aguirre-Acevedo DC, Tirado V, Munoz C, Henao E, Moreno S, Giraldo M, Acosta N, Rios Romenets S, Langbaum JB, Cho W, Reiman EM, Tariot PN, Rosselli M, Quiroz YT, Lopera F | Applied neuropsychology. Adult | 31230490 | Appl Neuropsychol Adult | 2021 Mar-Apr |
| A Three-Factor Structure of Cognitive Functioning Among Unimpaired Carriers and Non-Carriers of Autosomal-Dominant Alzheimer's Disease. | Guzmán-Vélez E, Jaimes S, Aguirre-Acevedo DC, Norton DJ, Papp KV, Amariglio R, Rentz D, Baena A, Henao E, Tirado V, Muñoz C, Giraldo M, Sperling RA, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 30040714 | J Alzheimers Dis | 2018 |
| Association of subjective cognitive decline with markers of brain pathology in preclinical autosomal dominant Alzheimer's disease. | Gatchel JR, Lopera F, Norton DJ, Baena A, Guzman-Velez E, Sanchez JS, d'Oleire Uquillas F, Schultz A, Vannini P, Artola A, Amariglio RE, Rentz DM, Tariot PN, Reiman EM, Johnson KA, Sperling RA, Marshall GA, Quiroz YT | Journal of neurology, neurosurgery, and psychiatry | 31874859 | J Neurol Neurosurg Psychiatry | 2020 Mar |
| Sex differences in cognitive resilience in preclinical autosomal-dominant Alzheimer's disease carriers and non-carriers: Baseline findings from the API ADAD Colombia Trial. | Vila-Castelar C, Tariot PN, Sink KM, Clayton D, Langbaum JB, Thomas RG, Chen Y, Su Y, Chen K, Hu N, Giraldo-Chica M, Tobón C, Acosta-Baena N, Luna E, Londoño M, Ospina P, Tirado V, Muñoz C, Henao E, Bocanegra Y, Alvarez S, Rios-Romenets S, Ghisays V, Goradia D, Lee W, Luo J, Malek-Ahmadi MH, Protas HD, Lopera F, Reiman EM, Quiroz YT, API ADAD Colombia Trial Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35103388 | Alzheimers Dement | 2022 Nov |
| Subjective Cognitive Decline and its Relation to Verbal Memory and Sex in Cognitively Unimpaired Individuals from a Colombian Cohort with Autosomal-Dominant Alzheimer's Disease. | Martinez JE, Pardilla-Delgado E, Guzmán-Vélez E, Vila-Castelar C, Amariglio R, Gatchel J, Aguirre-Acevedo DC, Bocanegra Y, Baena A, Henao E, Tirado V, Muñoz C, Giraldo-Chica M, Lopera F, Quiroz YT | Journal of the International Neuropsychological Society : JINS | 34187609 | J Int Neuropsychol Soc | 2022 Jul |
| Testing the amyloid cascade hypothesis: Prevention trials in autosomal dominant Alzheimer disease. | Levin J, Vöglein J, Quiroz YT, Bateman RJ, Ghisays V, Lopera F, McDade E, Reiman E, Tariot PN, Morris JC | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35212149 | Alzheimers Dement | 2022 Dec |
| Olfactory Function and Markers of Brain Pathology in Non-Demented Individuals with Autosomal Dominant Alzheimer's Disease. | Ramirez-Gomez L, Albers MW, Baena A, Vila-Castelar C, Fox-Fuller JT, Sanchez J, Jain F, Albers AD, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 35694921 | J Alzheimers Dis | 2022 |
| Successful Scene Encoding in Presymptomatic Early-Onset Alzheimer's Disease. | Quiroz YT, Willment KC, Castrillon G, Muniz M, Lopera F, Budson A, Stern CE | Journal of Alzheimer's disease : JAD | 26401774 | J Alzheimers Dis | 2015 |
| Validation of the Latin American Spanish version of the face-name associative memory exam in a Colombian Sample. | Vila-Castelar C, Papp KV, Amariglio RE, Torres VL, Baena A, Gomez D, Rendon J, Samaroo A, Lopera F, Rentz DM, Quiroz YT | The Clinical neuropsychologist | 31851865 | Clin Neuropsychol | 2020 Dec |
| Longitudinal Association of Depression Symptoms With Cognition and Cortical Amyloid Among Community-Dwelling Older Adults. | Gatchel JR, Rabin JS, Buckley RF, Locascio JJ, Quiroz YT, Yang HS, Vannini P, Amariglio RE, Rentz DM, Properzi M, Donovan NJ, Blacker D, Johnson KA, Sperling RA, Marshall GA, Harvard Aging Brain Study | JAMA network open | 31397865 | JAMA Netw Open | 2019 Aug 2 |
| PET evidence of preclinical cerebellar amyloid plaque deposition in autosomal dominant Alzheimer's disease-causing Presenilin-1 E280A mutation carriers. | Ghisays V, Lopera F, Goradia DD, Protas HD, Malek-Ahmadi MH, Chen Y, Devadas V, Luo J, Lee W, Baena A, Bocanegra Y, Guzmán-Vélez E, Pardilla-Delgado E, Vila-Castelar C, Fox-Fuller JT, Hu N, Clayton D, Thomas RG, Alvarez S, Espinosa A, Acosta-Baena N, Giraldo MM, Rios-Romenets S, Langbaum JB, Chen K, Su Y, Tariot PN, Quiroz YT, Reiman EM, API ADAD Colombia Trial Group | NeuroImage. Clinical | 34252876 | Neuroimage Clin | 2021 |
| Association Between Amyloid and Tau Accumulation in Young Adults With Autosomal Dominant Alzheimer Disease. | Quiroz YT, Sperling RA, Norton DJ, Baena A, Arboleda-Velasquez JF, Cosio D, Schultz A, Lapoint M, Guzman-Velez E, Miller JB, Kim LA, Chen K, Tariot PN, Lopera F, Reiman EM, Johnson KA | JAMA neurology | 29435558 | JAMA Neurol | 2018 May 1 |
| Biological and Cognitive Markers of Presenilin1 E280A Autosomal Dominant Alzheimer's Disease: A Comprehensive Review of the Colombian Kindred. | Fuller JT, Cronin-Golomb A, Gatchel JR, Norton DJ, Guzmán-Vélez E, Jacobs HIL, Hanseeuw B, Pardilla-Delgado E, Artola A, Baena A, Bocanegra Y, Kosik KS, Chen K, Tariot PN, Johnson K, Sperling RA, Reiman EM, Lopera F, Quiroz YT | The journal of prevention of Alzheimer's disease | 30756118 | J Prev Alzheimers Dis | 2019 |
| Subjective memory complaints in preclinical autosomal dominant Alzheimer disease. | Norton DJ, Amariglio R, Protas H, Chen K, Aguirre-Acevedo DC, Pulsifer B, Castrillon G, Tirado V, Munoz C, Tariot P, Langbaum JB, Reiman EM, Lopera F, Sperling RA, Quiroz YT | Neurology | 28878053 | Neurology | 2017 Oct 3 |
| A public resource of baseline data from the Alzheimer's Prevention Initiative Autosomal-Dominant Alzheimer's Disease Trial. | Reiman EM, Pruzin JJ, Rios-Romenets S, Brown C, Giraldo M, Acosta-Baena N, Tobon C, Hu N, Chen Y, Ghisays V, Enos J, Goradia DD, Lee W, Luo J, Malek-Ahmadi M, Protas H, Thomas RG, Chen K, Su Y, Boker C, Mastroeni D, Alvarez S, Quiroz YT, Langbaum JB, Sink KM, Lopera F, Tariot PN, API ADAD Colombia Trial Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 36373344 | Alzheimers Dement | 2023 May |
| Resilience to autosomal dominant Alzheimer's disease in a Reelin-COLBOS heterozygous man. | Lopera F, Marino C, Chandrahas AS, O'Hare M, Villalba-Moreno ND, Aguillon D, Baena A, Sanchez JS, Vila-Castelar C, Ramirez Gomez L, Chmielewska N, Oliveira GM, Littau JL, Hartmann K, Park K, Krasemann S, Glatzel M, Schoemaker D, Gonzalez-Buendia L, Delgado-Tirado S, Arevalo-Alquichire S, Saez-Torres KL, Amarnani D, Kim LA, Mazzarino RC, Gordon H, Bocanegra Y, Villegas A, Gai X, Bootwalla M, Ji J, Shen L, Kosik KS, Su Y, Chen Y, Schultz A, Sperling RA, Johnson K, Reiman EM, Sepulveda-Falla D, Arboleda-Velasquez JF, Quiroz YT | Nature medicine | 37188781 | Nat Med | 2023 May |
| MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure. | Keren L, Bosse M, Thompson S, Risom T, Vijayaragavan K, McCaffrey E, Marquez D, Angoshtari R, Greenwald NF, Fienberg H, Wang J, Kambham N, Kirkwood D, Nolan G, Montine TJ, Galli SJ, West R, Bendall SC, Angelo M | Science advances | 31633026 | Sci Adv | 2019 Oct |
| Multiplexed imaging reveals an IFN-γ-driven inflammatory state in nivolumab-associated gastritis. | Ferrian S, Liu CC, McCaffrey EF, Kumar R, Nowicki TS, Dawson DW, Baranski A, Glaspy JA, Ribas A, Bendall SC, Angelo M | Cell reports. Medicine | 34755133 | Cell Rep Med | 2021 Oct 19 |
| Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF). | Liu CC, Bosse M, Kong A, Kagel A, Kinders R, Hewitt SM, Varma S, van de Rijn M, Nowak SH, Bendall SC, Angelo M | Laboratory investigation; a journal of technical methods and pathology | 35351966 | Lab Invest | 2022 Jul |
| A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging. | Keren L, Bosse M, Marquez D, Angoshtari R, Jain S, Varma S, Yang SR, Kurian A, Van Valen D, West R, Bendall SC, Angelo M | Cell | 30193111 | Cell | 2018 Sep 6 |
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| Nonparametric variable importance assessment using machine learning techniques. | Williamson BD, Gilbert PB, Carone M, Simon N | Biometrics | 33043428 | Biometrics | 2021 Mar |
| Survival analysis of DNA mutation motifs with penalized proportional hazards. | Feng J, Shaw DA, Minin VN, Simon N, Matsen FA 4th | The annals of applied statistics | 33214798 | Ann Appl Stat | 2019 Jun |
| Simultaneous detection and estimation of trait associations with genomic phenotypes. | Morrison J, Simon N, Witten D | Biostatistics (Oxford, England) | 27496912 | Biostatistics | 2017 Jan |
| Learning to learn from data: Using deep adversarial learning to construct optimal statistical procedures. | Luedtke A, Carone M, Simon N, Sofrygin O | Science advances | 32166115 | Sci Adv | 2020 Feb |
| Rank Conditional Coverage and Confidence Intervals in High-Dimensional Problems. | Morrison J, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 30740009 | J Comput Graph Stat | 2018 |
| Convex Regression with Interpretable Sharp Partitions. | Petersen A, Simon N, Witten D | Journal of machine learning research : JMLR | 27635120 | J Mach Learn Res | 2016 Jun |
| A framework for estimating and testing qualitative interactions with applications to predictive biomarkers. | Roth J, Simon N | Biostatistics (Oxford, England) | 28968765 | Biostatistics | 2018 Jul 1 |
| ESTIMATION OF CELL LINEAGE TREES BY MAXIMUM-LIKELIHOOD PHYLOGENETICS. | Feng J, Dewitt WS 3rd, McKenna A, Simon N, Willis AD, Matsen FA 4th | The annals of applied statistics | 35990087 | Ann Appl Stat | 2021 Mar |
| A Flexible Framework for Nonparametric Graphical Modeling that Accommodates Machine Learning. | Xiang Y, Simon N | Proceedings of machine learning research | 33415321 | Proc Mach Learn Res | 2020 Jul |
| Convex Modeling of Interactions with Strong Heredity. | Haris A, Witten D, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 28316461 | J Comput Graph Stat | 2016 |
| An online framework for survival analysis: reframing Cox proportional hazards model for large data sets and neural networks. | Tarkhan A, Simon N | Biostatistics (Oxford, England) | 36288541 | Biostatistics | 2023 Dec 15 |
| Selectivity in subunit composition of Ena/VASP tetramers. | Riquelme DN, Meyer AS, Barzik M, Keating A, Gertler FB | Bioscience reports | 26221026 | Biosci Rep | 2015 Jul 28 |
| An engineered human Fc domain that behaves like a pH-toggle switch for ultra-long circulation persistence. | Lee CH, Kang TH, Godon O, Watanabe M, Delidakis G, Gillis CM, Sterlin D, Hardy D, Cogné M, Macdonald LE, Murphy AJ, Tu N, Lee J, McDaniel JR, Makowski E, Tessier PM, Meyer AS, Bruhns P, Georgiou G | Nature communications | 31695028 | Nat Commun | 2019 Nov 6 |
| Systems Approaches to Cancer Biology. | Archer TC, Fertig EJ, Gosline SJ, Hafner M, Hughes SK, Joughin BA, Meyer AS, Piccolo SR, Shajahan-Haq AN | Cancer research | 27864348 | Cancer Res | 2016 Dec 1 |
| Apoptotic Bodies Elicit Gas6-Mediated Migration of AXL-Expressing Tumor Cells. | Zweemer AJM, French CB, Mesfin J, Gordonov S, Meyer AS, Lauffenburger DA | Molecular cancer research : MCR | 28923840 | Mol Cancer Res | 2017 Dec |
| JNK Pathway Activation Modulates Acquired Resistance to EGFR/HER2-Targeted Therapies. | Manole S, Richards EJ, Meyer AS | Cancer research | 27450453 | Cancer Res | 2016 Sep 15 |
| The AXL Receptor is a Sensor of Ligand Spatial Heterogeneity. | Meyer AS, Zweemer AJ, Lauffenburger DA | Cell systems | 26236777 | Cell Syst | 2015 Jul 29 |
| Versatile targeting system for lentiviral vectors involving biotinylated targeting molecules. | Situ K, Chua BA, Bae SY, Meyer AS, Morizono K | Virology | 30290312 | Virology | 2018 Dec |
| Dissecting FcγR Regulation through a Multivalent Binding Model. | Robinett RA, Guan N, Lux A, Biburger M, Nimmerjahn F, Meyer AS | Cell systems | 29960887 | Cell Syst | 2018 Jul 25 |
| A biomaterial screening approach reveals microenvironmental mechanisms of drug resistance. | Schwartz AD, Barney LE, Jansen LE, Nguyen TV, Hall CL, Meyer AS, Peyton SR | Integrative biology : quantitative biosciences from nano to macro | 29159332 | Integr Biol (Camb) | 2017 Dec 11 |
| Modeling cell-specific dynamics and regulation of the common gamma chain cytokines. | Farhat AM, Weiner AC, Posner C, Kim ZS, Orcutt-Jahns B, Carlson SM, Meyer AS | Cell reports | 33910015 | Cell Rep | 2021 Apr 27 |
| Systems biology approaches to measure and model phenotypic heterogeneity in cancer. | Meyer AS, Heiser LM | Current opinion in systems biology | 32864511 | Curr Opin Syst Biol | 2019 Oct |
| Day by day, hour by hour: Naturalistic language input to infants. | Bergelson E, Amatuni A, Dailey S, Koorathota S, Tor S | Developmental science | 30094888 | Dev Sci | 2019 Jan |
| How adults understand what young children say. | Meylan SC, Foushee R, Wong NH, Bergelson E, Levy RP | Nature human behaviour | 37884678 | Nat Hum Behav | 2023 Dec |
| Everyday language input and production in 1,001 children from six continents. | Bergelson E, Soderstrom M, Schwarz IC, Rowland CF, Ramírez-Esparza N, R Hamrick L, Marklund E, Kalashnikova M, Guez A, Casillas M, Benetti L, Alphen PV, Cristia A | Proceedings of the National Academy of Sciences of the United States of America | 38085754 | Proc Natl Acad Sci U S A | 2023 Dec 26 |
| Artificial intelligence-powered 3D analysis of video-based caregiver-child interactions. | Weng Z, Bravo-Sánchez L, Wang Z, Howard C, Xenochristou M, Meister N, Kanazawa A, Milstein A, Bergelson E, Humphreys KL, Sanders LM, Yeung-Levy S | Science advances | 39951536 | Sci Adv | 2025 Feb 14 |
| Accuracy of the Language Environment Analysis System Segmentation and Metrics: A Systematic Review. | Cristia A, Bulgarelli F, Bergelson E | Journal of speech, language, and hearing research : JSLHR | 32302262 | J Speech Lang Hear Res | 2020 Apr 27 |
| The Comprehension Boost in Early Word Learning: Older Infants Are Better Learners. | Bergelson E | Child development perspectives | 33569084 | Child Dev Perspect | 2020 Sep |
| Young Infants' Word Comprehension Given An Unfamiliar Talker or Altered Pronunciations. | Bergelson E, Swingley D | Child development | 28639708 | Child Dev | 2018 Sep |
| Nature and origins of the lexicon in 6-mo-olds. | Bergelson E, Aslin RN | Proceedings of the National Academy of Sciences of the United States of America | 29158399 | Proc Natl Acad Sci U S A | 2017 Dec 5 |
| HomeBank: An Online Repository of Daylong Child-Centered Audio Recordings. | VanDam M, Warlaumont AS, Bergelson E, Cristia A, Soderstrom M, De Palma P, MacWhinney B | Seminars in speech and language | 27111272 | Semin Speech Lang | 2016 May |
| What Do North American Babies Hear? A large-scale cross-corpus analysis. | Bergelson E, Casillas M, Soderstrom M, Seidl A, Warlaumont AS, Amatuni A | Developmental science | 30369005 | Dev Sci | 2019 Jan |
| Point, walk, talk: Links between three early milestones, from observation and parental report. | Moore C, Dailey S, Garrison H, Amatuni A, Bergelson E | Developmental psychology | 31094558 | Dev Psychol | 2019 Aug |
| Mothers' Work Status and 17-month-olds' Productive Vocabulary. | Laing CE, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 30962769 | Infancy | 2019 Jan-Feb |
| Look who's talking: A comparison of automated and human-generated speaker tags in naturalistic day-long recordings. | Bulgarelli F, Bergelson E | Behavior research methods | 31342467 | Behav Res Methods | 2020 Apr |
| Semantic Specificity in One-Year-Olds' Word Comprehension. | Bergelson E, Aslin R | Language learning and development : the official journal of the Society for Language Development | 29200981 | Lang Learn Dev | 2017 |
| Analyzing the effect of sibling number on input and output in the first 18 months. | Laing C, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 38183663 | Infancy | 2024 Mar-Apr |
| Quantifying Talker Variability in North-American Infants' Daily Input. | Bulgarelli F, Mielke J, Bergelson E | Cognitive science | 34971003 | Cogn Sci | 2021 Jan |
| Talking to talkers: Infants' talk status, but not their gender, is related to language input. | Dailey S, Bergelson E | Child development | 36458329 | Child Dev | 2023 Mar |
| Talker variability shapes early word representations in English-learning 8-month-olds. | Bulgarelli F, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 34997679 | Infancy | 2022 Mar |
| A Collaborative Approach to Infant Research: Promoting Reproducibility, Best Practices, and Theory-Building. | Frank MC, Bergelson E, Bergmann C, Cristia A, Floccia C, Gervain J, Hamlin JK, Hannon EE, Kline M, Levelt C, Lew-Williams C, Nazzi T, Panneton R, Rabagliati H, Soderstrom M, Sullivan J, Waxman S, Yurovsky D | Infancy : the official journal of the International Society on Infant Studies | 31772509 | Infancy | 2017 Jul-Aug |
| From babble to words: Infants' early productions match words and objects in their environment. | Laing C, Bergelson E | Cognitive psychology | 32504852 | Cogn Psychol | 2020 Nov |
| A thorough evaluation of the Language Environment Analysis (LENA) system. | Cristia A, Lavechin M, Scaff C, Soderstrom M, Rowland C, Räsänen O, Bunce J, Bergelson E | Behavior research methods | 32728916 | Behav Res Methods | 2021 Apr |
| Familiarity plays a small role in noun comprehension at 12-18 months. | Garrison H, Baudet G, Breitfeld E, Aberman A, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 32744800 | Infancy | 2020 Jul |
| Vocal development in a large-scale crosslinguistic corpus. | Cychosz M, Cristia A, Bergelson E, Casillas M, Baudet G, Warlaumont AS, Scaff C, Yankowitz L, Seidl A | Developmental science | 33497512 | Dev Sci | 2021 Sep |
| Talker variability is not always the right noise: 14 month olds struggle to learn dissimilar word-object pairs under talker variability conditions. | Bulgarelli F, Bergelson E | Journal of experimental child psychology | 36395621 | J Exp Child Psychol | 2023 Mar |
| Linking acoustic variability in the infants' input to their early word production. | Bulgarelli F, Bergelson E | Developmental science | 38978148 | Dev Sci | 2024 Nov |
| Pervasive Heavy Alcohol Use and Correlates of Increasing Levels of Binge Drinking among Men Who Have Sex with Men, San Francisco, 2011. | Santos GM, Jin H, Raymond HF | Journal of urban health : bulletin of the New York Academy of Medicine | 25895622 | J Urban Health | 2015 Aug |
| Correlates of Alcohol-Using Network Size Among Men Who Have Sex with Men in San Francisco, CA. | Garcia A, Rowe C, Turner C, Santos GM | American journal of men's health | 33899602 | Am J Mens Health | 2021 Mar-Apr |
| Syndemic conditions associated with hazardous alcohol consumption among sexual minority men in San Francisco. | Ngo TP, Cuffaro T, Santos GM | Drug and alcohol dependence reports | 39619334 | Drug Alcohol Depend Rep | 2024 Dec |
| Prevalence and correlates of hazardous alcohol consumption and binge drinking among men who have sex with men (MSM) in San Francisco. | Santos GM, Rowe C, Hern J, Walker JE, Ali A, Ornelaz M, Prescott M, Coffin P, McFarland W, Raymond HF | PloS one | 30118495 | PLoS One | 2018 |
| Social and Behavioral Correlates of Sexually Transmitted Infections among Men who Have Sex with Men who Use Alcohol in the San Francisco Bay Area. | Jain JP, Gyamerah AO, Baguso GN, Dawson-Rose C, Ikeda J, Santos GM | American journal of men's health | 34134567 | Am J Mens Health | 2021 May-Jun |
| Does HIV Pre-Exposure Prophylaxis Modify the Effect of Partnership Characteristics on Condom Use? A Cross-Sectional Study of Sexual Partnerships Among Men Who Have Sex with Men in San Francisco, California. | Prescott MR, Hern J, Petersen M, Santos GM | AIDS patient care and STDs | 30932698 | AIDS Patient Care STDS | 2019 Apr |
| Acceptability of pharmacotherapy for hazardous alcohol use among men who have sex with men: Findings from a qualitative study. | Hsiang E, Jennings D, Matheson T, Hern J, Euren J, Santos GM | Addictive behaviors reports | 30258972 | Addict Behav Rep | 2018 Dec |
| Racial/Ethnic Disparities in Club Drug Use, Situational Club Drug Use during Sex, and Sexual Risk Behaviors among Alcohol-Using Men Who Have Sex with Men (MSM) in San Francisco. | Santos GM, Hernandez C, Lam E, Hern J, Rowe C | Substance use & misuse | 38307836 | Subst Use Misuse | 2024 |
| Interest in the Use of Herbal Supplements to Close the Treatment Gap for Hazardous Alcohol Use Among Men Who Have Sex With Men: Secondary Analysis of a Cross-Sectional Study. | Hernandez C, Rowe C, Ikeda J, Arenander J, Santos GM | JMIR formative research | 39471379 | JMIR Form Res | 2024 Oct 29 |
| Targeted Oral Naltrexone for Mild to Moderate Alcohol Use Disorder Among Sexual and Gender Minority Men: A Randomized Trial. | Santos GM, Ikeda J, Coffin P, Walker J, Matheson T, Ali A, McLaughlin M, Jain J, Arenander J, Vittinghoff E, Batki S | The American journal of psychiatry | 36285404 | Am J Psychiatry | 2022 Dec 1 |
| Correlates of high phosphatidylethanol (PEth) levels and their concordance with self-reported heavy alcohol consumption among men who have sex with men who binge drink alcohol. | McLaughlin MF, Jain JP, Ikeda J, Walker JE, Coffin P, Santos GM | Alcoholism, clinical and experimental research | 35722862 | Alcohol Clin Exp Res | 2022 Aug |
| Binge drinking concurrent with anal intercourse and condom use among men who have sex with men. | Rowe C, Liou T, Vittinghoff E, Coffin PO, Santos GM | AIDS care | 27241085 | AIDS Care | 2016 Dec |
| Solution Structure of the Cuz1 AN1 Zinc Finger Domain: An Exposed LDFLP Motif Defines a Subfamily of AN1 Proteins. | Sun ZJ, Bhanu MK, Allan MG, Arthanari H, Wagner G, Hanna J | PloS one | 27662200 | PLoS One | 2016 |
| Yeast PI31 inhibits the proteasome by a direct multisite mechanism. | Rawson S, Walsh RM Jr, Velez B, Schnell HM, Jiao F, Blickling M, Ang J, Bhanu MK, Huang L, Hanna J | Nature structural & molecular biology | 35927584 | Nat Struct Mol Biol | 2022 Aug |
| Phospholipase Lpl1 links lipid droplet function with quality control protein degradation. | Weisshaar N, Welsch H, Guerra-Moreno A, Hanna J | Molecular biology of the cell | 28100635 | Mol Biol Cell | 2017 Mar 15 |
| Structures of chaperone-associated assembly intermediates reveal coordinated mechanisms of proteasome biogenesis. | Schnell HM, Walsh RM Jr, Rawson S, Kaur M, Bhanu MK, Tian G, Prado MA, Guerra-Moreno A, Paulo JA, Gygi SP, Roelofs J, Finley D, Hanna J | Nature structural & molecular biology | 33846632 | Nat Struct Mol Biol | 2021 May |
| Targeted Degradation of Glucose Transporters Protects against Arsenic Toxicity. | Jochem M, Ende L, Isasa M, Ang J, Schnell H, Guerra-Moreno A, Micoogullari Y, Bhanu M, Gygi SP, Hanna J | Molecular and cellular biology | 30886123 | Mol Cell Biol | 2019 May 15 |
| Thiol-based direct threat sensing by the stress-activated protein kinase Hog1. | Guerra-Moreno A, Prado MA, Ang J, Schnell HM, Micoogullari Y, Paulo JA, Finley D, Gygi SP, Hanna J | Science signaling | 31772124 | Sci Signal | 2019 Nov 26 |
| Tmc1 Is a Dynamically Regulated Effector of the Rpn4 Proteotoxic Stress Response. | Guerra-Moreno A, Hanna J | The Journal of biological chemistry | 27226598 | J Biol Chem | 2016 Jul 8 |
| Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response. | Guerra-Moreno A, Isasa M, Bhanu MK, Waterman DP, Eapen VV, Gygi SP, Hanna J | The Journal of biological chemistry | 26491016 | J Biol Chem | 2015 Dec 11 |
| Dysregulation of very-long-chain fatty acid metabolism causes membrane saturation and induction of the unfolded protein response. | Micoogullari Y, Basu SS, Ang J, Weisshaar N, Schmitt ND, Abdelmoula WM, Lopez B, Agar JN, Agar N, Hanna J | Molecular biology of the cell | 31746669 | Mol Biol Cell | 2020 Jan 1 |
| Mechanism of proteasome gate modulation by assembly chaperones Pba1 and Pba2. | Schnell HM, Ang J, Rawson S, Walsh RM Jr, Micoogullari Y, Hanna J | The Journal of biological chemistry | 35398095 | J Biol Chem | 2022 May |
| Reg1 and Snf1 regulate stress-induced relocalization of protein phosphatase-1 to cytoplasmic granules. | Schnell HM, Jochem M, Micoogullari Y, Riggs CL, Ivanov P, Welsch H, Ravindran R, Anderson P, Robinson LC, Tatchell K, Hanna J | The FEBS journal | 33682330 | FEBS J | 2021 Aug |
| Protein Degradation and the Pathologic Basis of Disease. | Hanna J, Guerra-Moreno A, Ang J, Micoogullari Y | The American journal of pathology | 30312581 | Am J Pathol | 2019 Jan |
| Induction of proteotoxic stress by the mycotoxin patulin. | Guerra-Moreno A, Hanna J | Toxicology letters | 28529145 | Toxicol Lett | 2017 Jul 5 |
| Regulation of the unfolded protein response in yeast by oxidative stress. | Guerra-Moreno A, Ang J, Welsch H, Jochem M, Hanna J | FEBS letters | 31002390 | FEBS Lett | 2019 May |
| Escherichia coli self-organizes developmental rosettes. | Puri D, Allison KR | Proceedings of the National Academy of Sciences of the United States of America | 38814871 | Proc Natl Acad Sci U S A | 2024 Jun 4 |
| Potentiating aminoglycoside antibiotics to reduce their toxic side effects. | Rosenberg CR, Fang X, Allison KR | PloS one | 32877437 | PLoS One | 2020 |
| Resuscitation dynamics reveal persister partitioning after antibiotic treatment. | Fang X, Allison KR | Molecular systems biology | 36866643 | Mol Syst Biol | 2023 Apr 12 |
| Bi-allelic Loss of CDKN2A Initiates Melanoma Invasion via BRN2 Activation. | Zeng H, Jorapur A, Shain AH, Lang UE, Torres R, Zhang Y, McNeal AS, Botton T, Lin J, Donne M, Bastian IN, Yu R, North JP, Pincus L, Ruben BS, Joseph NM, Yeh I, Bastian BC, Judson RL | Cancer cell | 29990501 | Cancer Cell | 2018 Jul 9 |
| Evaluation of holographic imaging cytometer holomonitor M4® motility applications. | Zhang Y, Judson RL | Cytometry. Part A : the journal of the International Society for Analytical Cytology | 30343513 | Cytometry A | 2018 Nov |
| BRAF(V600E) induces reversible mitotic arrest in human melanocytes via microrna-mediated suppression of AURKB. | McNeal AS, Belote RL, Zeng H, Urquijo M, Barker K, Torres R, Curtin M, Shain AH, Andtbacka RH, Holmen S, Lum DH, McCalmont TH, VanBrocklin MW, Grossman D, Wei ML, Lang UE, Judson-Torres RL | eLife | 34812139 | Elife | 2021 Nov 23 |
| The genomic landscapes of individual melanocytes from human skin. | Tang J, Fewings E, Chang D, Zeng H, Liu S, Jorapur A, Belote RL, McNeal AS, Tan TM, Yeh I, Arron ST, Judson-Torres RL, Bastian BC, Shain AH | Nature | 33029006 | Nature | 2020 Oct |
| High accuracy label-free classification of single-cell kinetic states from holographic cytometry of human melanoma cells. | Hejna M, Jorapur A, Song JS, Judson RL | Scientific reports | 28931937 | Sci Rep | 2017 Sep 20 |
| MicroRNA Ratios Distinguish Melanomas from Nevi. | Torres R, Lang UE, Hejna M, Shelton SJ, Joseph NM, Shain AH, Yeh I, Wei ML, Oldham MC, Bastian BC, Judson-Torres RL | The Journal of investigative dermatology | 31580842 | J Invest Dermatol | 2020 Jan |
| Delayed Ras/PKA signaling augments the unfolded protein response. | Pincus D, Aranda-Díaz A, Zuleta IA, Walter P, El-Samad H | Proceedings of the National Academy of Sciences of the United States of America | 25275008 | Proc Natl Acad Sci U S A | 2014 Oct 14 |
| Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation. | Zheng X, Krakowiak J, Patel N, Beyzavi A, Ezike J, Khalil AS, Pincus D | eLife | 27831465 | Elife | 2016 Nov 10 |
| Chaperone AMPylation modulates aggregation and toxicity of neurodegenerative disease-associated polypeptides. | Truttmann MC, Pincus D, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 29760078 | Proc Natl Acad Sci U S A | 2018 May 29 |
| Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity. | Kayatekin C, Amasino A, Gaglia G, Flannick J, Bonner JM, Fanning S, Narayan P, Barrasa MI, Pincus D, Landgraf D, Nelson J, Hesse WR, Costanzo M, AMP T2D-GENES Consortium, Myers CL, Boone C, Florez JC, Lindquist S | Cell | 29526462 | Cell | 2018 Mar 22 |
| m(6)A modification of a 3' UTR site reduces RME1 mRNA levels to promote meiosis. | Bushkin GG, Pincus D, Morgan JT, Richardson K, Lewis C, Chan SH, Bartel DP, Fink GR | Nature communications | 31363087 | Nat Commun | 2019 Jul 30 |
| Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis. | Solís EJ, Pandey JP, Zheng X, Jin DX, Gupta PB, Airoldi EM, Pincus D, Denic V | Molecular cell | 27320198 | Mol Cell | 2016 Jul 7 |
| Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis. | Solís EJ, Pandey JP, Zheng X, Jin DX, Gupta PB, Airoldi EM, Pincus D, Denic V | Molecular cell | 29395071 | Mol Cell | 2018 Feb 1 |
| Unrestrained AMPylation targets cytosolic chaperones and activates the heat shock response. | Truttmann MC, Zheng X, Hanke L, Damon JR, Grootveld M, Krakowiak J, Pincus D, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 28031489 | Proc Natl Acad Sci U S A | 2017 Jan 10 |
| An evolution-based strategy for engineering allosteric regulation. | Pincus D, Resnekov O, Reynolds KA | Physical biology | 28266924 | Phys Biol | 2017 Apr 28 |
| Heat Shock Factor 1 Drives Intergenic Association of Its Target Gene Loci upon Heat Shock. | Chowdhary S, Kainth AS, Pincus D, Gross DS | Cell reports | 30605674 | Cell Rep | 2019 Jan 2 |
| Hsf1 and Hsp70 constitute a two-component feedback loop that regulates the yeast heat shock response. | Krakowiak J, Zheng X, Patel N, Feder ZA, Anandhakumar J, Valerius K, Gross DS, Khalil AS, Pincus D | eLife | 29393852 | Elife | 2018 Feb 2 |
| Hsf1 Phosphorylation Generates Cell-to-Cell Variation in Hsp90 Levels and Promotes Phenotypic Plasticity. | Zheng X, Beyzavi A, Krakowiak J, Patel N, Khalil AS, Pincus D | Cell reports | 29562166 | Cell Rep | 2018 Mar 20 |
| Size doesn't matter in the heat shock response. | Pincus D | Current genetics | 27502399 | Curr Genet | 2017 May |
| tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae. | Damon JR, Pincus D, Ploegh HL | Molecular biology of the cell | 25392298 | Mol Biol Cell | 2015 Jan 15 |
| Lipidomic Analysis of α-Synuclein Neurotoxicity Identifies Stearoyl CoA Desaturase as a Target for Parkinson Treatment. | Fanning S, Haque A, Imberdis T, Baru V, Barrasa MI, Nuber S, Termine D, Ramalingam N, Ho GPH, Noble T, Sandoe J, Lou Y, Landgraf D, Freyzon Y, Newby G, Soldner F, Terry-Kantor E, Kim TE, Hofbauer HF, Becuwe M, Jaenisch R, Pincus D, Clish CB, Walther TC, Farese RV Jr, Srinivasan S, Welte MA, Kohlwein SD, Dettmer U, Lindquist S, Selkoe D | Molecular cell | 30527540 | Mol Cell | 2019 Mar 7 |
| Hierarchical Organization Endows the Kinase Domain with Regulatory Plasticity. | Creixell P, Pandey JP, Palmeri A, Bhattacharyya M, Creixell M, Ranganathan R, Pincus D, Yaffe MB | Cell systems | 30243563 | Cell Syst | 2018 Oct 24 |
| Specificity in endoplasmic reticulum-stress signaling in yeast entails a step-wise engagement of HAC1 mRNA to clusters of the stress sensor Ire1. | van Anken E, Pincus D, Coyle S, Aragón T, Osman C, Lari F, Gómez Puerta S, Korennykh AV, Walter P | eLife | 25549299 | Elife | 2014 Dec 30 |
| Engineering allosteric regulation in protein kinases. | Pincus D, Pandey JP, Feder ZA, Creixell P, Resnekov O, Reynolds KA | Science signaling | 30401787 | Sci Signal | 2018 Nov 6 |
| Serial Immunoprecipitation of 3xFLAG/V5-tagged Yeast Proteins to Identify Specific Interactions with Chaperone Proteins. | Zheng X, Pincus D | Bio-protocol | 29104895 | Bio Protoc | 2017 Jun 20 |
| Persistent Activation of mRNA Translation by Transient Hsp90 Inhibition. | Tsvetkov P, Eisen TJ, Heinrich SU, Brune Z, Hallacli E, Newby GA, Kayatekin C, Pincus D, Lindquist S | Cell reports | 32783929 | Cell Rep | 2020 Aug 11 |
| Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome. | Pincus D, Anandhakumar J, Thiru P, Guertin MJ, Erkine AM, Gross DS | Molecular biology of the cell | 30332327 | Mol Biol Cell | 2018 Dec 15 |
| Subcellular localization of the J-protein Sis1 regulates the heat shock response. | Feder ZA, Ali A, Singh A, Krakowiak J, Zheng X, Bindokas VP, Wolfgeher D, Kron SJ, Pincus D | The Journal of cell biology | 33326013 | J Cell Biol | 2021 Jan 4 |
| Multi-kinase control of environmental stress responsive transcription. | Mace K, Krakowiak J, El-Samad H, Pincus D | PloS one | 32160258 | PLoS One | 2020 |
| Blue light receptor CRY1 regulates HSFA1d nuclear localization to promote plant thermotolerance. | Gao J, Zhang R, Zheng L, Song L, Ji M, Li S, Wang J, Yang J, Kang G, Zhang P, Shi Y, Jiao Y, Pincus D, Zheng X | Cell reports | 37703177 | Cell Rep | 2023 Sep 26 |
| Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment. | Wang T, Tsui B, Kreisberg JF, Robertson NA, Gross AM, Yu MK, Carter H, Brown-Borg HM, Adams PD, Ideker T | Genome biology | 28351423 | Genome Biol | 2017 Mar 28 |
| A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. | Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T | Nature genetics | 29610481 | Nat Genet | 2018 Apr |
| Modeling of RAS complexes supports roles in cancer for less studied partners. | Engin HB, Carlin D, Pratt D, Carter H | BMC biophysics | 28815022 | BMC Biophys | 2017 |
| Evolutionary Pressure against MHC Class II Binding Cancer Mutations. | Marty Pyke R, Thompson WK, Salem RM, Font-Burgada J, Zanetti M, Carter H | Cell | 30245014 | Cell | 2018 Oct 4 |
| 3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry. | Velez DO, Tsui B, Goshia T, Chute CL, Han A, Carter H, Fraley SI | Nature communications | 29162797 | Nat Commun | 2017 Nov 21 |
| Predicting functional consequences of mutations using molecular interaction network features. | Ozturk K, Carter H | Human genetics | 34432150 | Hum Genet | 2022 Jun |
| MHC-I genotype drives early immune selection of oncogenic mutations. | Marty R, de Prisco N, Carter H, Font-Burgada J | Molecular & cellular oncology | 29487895 | Mol Cell Oncol | 2018 |
| MHC-I Genotype Restricts the Oncogenic Mutational Landscape. | Marty R, Kaabinejadian S, Rossell D, Slifker MJ, van de Haar J, Engin HB, de Prisco N, Ideker T, Hildebrand WH, Font-Burgada J, Carter H | Cell | 29107334 | Cell | 2017 Nov 30 |
| Identifying mutation specific cancer pathways using a structurally resolved protein interaction network. | Engin HB, Hofree M, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 25592571 | Pac Symp Biocomput | 2015 |
| MHC-I genotype and tumor mutational burden predict response to immunotherapy. | Goodman AM, Castro A, Pyke RM, Okamura R, Kato S, Riviere P, Frampton G, Sokol E, Zhang X, Ball ED, Carter H, Kurzrock R | Genome medicine | 32430031 | Genome Med | 2020 May 19 |
| Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. | Klie A, Tsui BY, Mollah S, Skola D, Dow M, Hsu CN, Carter H | Database : the journal of biological databases and curation | 33914028 | Database (Oxford) | 2021 Apr 29 |
| Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes. | Castro A, Ozturk K, Pyke RM, Xian S, Zanetti M, Carter H | BMC medical genomics | 31345234 | BMC Med Genomics | 2019 Jul 25 |
| Extracting allelic read counts from 250,000 human sequencing runs in Sequence Read Archive. | Tsui B, Dow M, Skola D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864322 | Pac Symp Biocomput | 2019 |
| Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss. | Gross AM, Orosco RK, Shen JP, Egloff AM, Carter H, Hofree M, Choueiri M, Coffey CS, Lippman SM, Hayes DN, Cohen EE, Grandis JR, Nguyen QT, Ideker T | Nature genetics | 25086664 | Nat Genet | 2014 Sep |
| Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. | Zhou Y, Bastian IN, Long MD, Dow M, Li W, Liu T, Ngu RK, Antonucci L, Huang JY, Phung QT, Zhao XH, Banerjee S, Lin XJ, Wang H, Dang B, Choi S, Karin D, Su H, Ellisman MH, Jamieson C, Bosenberg M, Cheng Z, Haybaeck J, Kenner L, Fisch KM, Bourgon R, Hernandez G, Lill JR, Liu S, Carter H, Mellman I, Karin M, Shalapour S | Proceedings of the National Academy of Sciences of the United States of America | 33602823 | Proc Natl Acad Sci U S A | 2021 Feb 23 |
| Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls. | Buckley AR, Standish KA, Bhutani K, Ideker T, Lasken RS, Carter H, Harismendy O, Schork NJ | BMC genomics | 28606096 | BMC Genomics | 2017 Jun 12 |
| Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. | Carter H, Marty R, Hofree M, Gross AM, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo GW, Gutkind JS, Ideker T | Cancer discovery | 28188128 | Cancer Discov | 2017 Apr |
| Identifying Driver Interfaces Enriched for Somatic Missense Mutations in Tumors. | Ozturk K, Carter H | Methods in molecular biology (Clifton, N.J.) | 30542990 | Methods Mol Biol | 2019 |
| Integrating molecular networks with genetic variant interpretation for precision medicine. | Capriotti E, Ozturk K, Carter H | Wiley interdisciplinary reviews. Systems biology and medicine | 30548534 | Wiley Interdiscip Rev Syst Biol Med | 2019 May |
| Integrative genomic analysis of mouse and human hepatocellular carcinoma. | Dow M, Pyke RM, Tsui BY, Alexandrov LB, Nakagawa H, Taniguchi K, Seki E, Harismendy O, Shalapour S, Karin M, Carter H, Font-Burgada J | Proceedings of the National Academy of Sciences of the United States of America | 30287485 | Proc Natl Acad Sci U S A | 2018 Oct 16 |
| Common genetic variation in the germline influences where and how tumors develop. | Carter H, Ideker T | Molecular & cellular oncology | 28616579 | Mol Cell Oncol | 2017 |
| The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine. | Ozturk K, Dow M, Carlin DE, Bejar R, Carter H | Journal of molecular biology | 29908887 | J Mol Biol | 2018 Sep 14 |
| IRE1α regulates macrophage polarization, PD-L1 expression, and tumor survival. | Batista A, Rodvold JJ, Xian S, Searles SC, Lew A, Iwawaki T, Almanza G, Waller TC, Lin J, Jepsen K, Carter H, Zanetti M | PLoS biology | 32520957 | PLoS Biol | 2020 Jun |
| Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response. | Zhang P, Kitchen-Smith I, Xiong L, Stracquadanio G, Brown K, Richter PH, Wallace MD, Bond E, Sahgal N, Moore S, Nornes S, De Val S, Surakhy M, Sims D, Wang X, Bell DA, Zeron-Medina J, Jiang Y, Ryan AJ, Selfe JL, Shipley J, Kar S, Pharoah PD, Loveday C, Jansen R, Grochola LF, Palles C, Protheroe A, Millar V, Ebner DV, Pagadala M, Blagden SP, Maughan TS, Domingo E, Tomlinson I, Turnbull C, Carter H, Bond GL | Cancer research | 33558336 | Cancer Res | 2021 Apr 1 |
| Challenges in identifying cancer genes by analysis of exome sequencing data. | Hofree M, Carter H, Kreisberg JF, Bandyopadhyay S, Mischel PS, Friend S, Ideker T | Nature communications | 27417679 | Nat Commun | 2016 Jul 15 |
| Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival. | Pyke RM, Genolet R, Harari A, Coukos G, Gfeller D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864318 | Pac Symp Biocomput | 2019 |
| The RUNX1-ETO target gene RASSF2 suppresses t(8;21) AML development and regulates Rac GTPase signaling. | Stoner SA, Liu KTH, Andrews ET, Liu M, Arimoto KI, Yan M, Davis AG, Weng S, Dow M, Xian S, DeKelver RC, Carter H, Zhang DE | Blood cancer journal | 32029705 | Blood Cancer J | 2020 Feb 6 |
| Structure-Based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces. | Engin HB, Kreisberg JF, Carter H | PloS one | 27043210 | PLoS One | 2016 |
| Immune DNA signature of T-cell infiltration in breast tumor exomes. | Levy E, Marty R, Gárate Calderón V, Woo B, Dow M, Armisen R, Carter H, Harismendy O | Scientific reports | 27452728 | Sci Rep | 2016 Jul 25 |
| Interactions between the microbiota, immune and nervous systems in health and disease. | Fung TC, Olson CA, Hsiao EY | Nature neuroscience | 28092661 | Nat Neurosci | 2017 Feb |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 30007420 | Cell | 2018 Jul 12 |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 29804833 | Cell | 2018 Jun 14 |
| Intestinal serotonin and fluoxetine exposure modulate bacterial colonization in the gut. | Fung TC, Vuong HE, Luna CDG, Pronovost GN, Aleksandrova AA, Riley NG, Vavilina A, McGinn J, Rendon T, Forrest LR, Hsiao EY | Nature microbiology | 31477894 | Nat Microbiol | 2019 Dec |
| The Microbiome as a Modifier of Neurodegenerative Disease Risk. | Fang P, Kazmi SA, Jameson KG, Hsiao EY | Cell host & microbe | 32791113 | Cell Host Microbe | 2020 Aug 12 |
| Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis. | Yano JM, Yu K, Donaldson GP, Shastri GG, Ann P, Ma L, Nagler CR, Ismagilov RF, Mazmanian SK, Hsiao EY | Cell | 25860609 | Cell | 2015 Apr 9 |
| The Microbial Olympics 2016. | Nelson MB, Chase AB, Martiny JB, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, Ackermann M, Smillie C, Chien D, Alm E, Jermy AJ | Nature microbiology | 27573121 | Nat Microbiol | 2016 Jul 26 |
| The Microbiome and Host Behavior. | Vuong HE, Yano JM, Fung TC, Hsiao EY | Annual review of neuroscience | 28301775 | Annu Rev Neurosci | 2017 Jul 25 |
| Emerging Roles for the Gut Microbiome in Autism Spectrum Disorder. | Vuong HE, Hsiao EY | Biological psychiatry | 27773355 | Biol Psychiatry | 2017 Mar 1 |
| Defining Dysbiosis in Disorders of Movement and Motivation. | Fields CT, Sampson TR, Bruce-Keller AJ, Kiraly DD, Hsiao EY, de Vries GJ | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30381433 | J Neurosci | 2018 Oct 31 |
| Weight stigma and eating behaviors on a college campus: Are students immune to stigma's effects? | Brewis A, Brennhofer S, van Woerden I, Bruening M | Preventive medicine reports | 27833844 | Prev Med Rep | 2016 Dec |
| Evaluating Potential Behavioral Mediators for Increasing Similarity in Friends' Body Size among College Students. | van Woerden I, Hruschka D, Schaefer DR, Fine KL, Bruening M | Nutrients | 31450804 | Nutrients | 2019 Aug 23 |
| A Systematic Review of Methods and Procedures Used in Ecological Momentary Assessments of Diet and Physical Activity Research in Youth: An Adapted STROBE Checklist for Reporting EMA Studies (CREMAS). | Liao Y, Skelton K, Dunton G, Bruening M | Journal of medical Internet research | 27328833 | J Med Internet Res | 2016 Jun 21 |
| Longitudinal social networks impacts on weight and weight-related behaviors assessed using mobile-based ecological momentary assessments: Study Protocols for the SPARC study. | Bruening M, Ohri-Vachaspati P, Brewis A, Laska M, Todd M, Hruschka D, Schaefer DR, Whisner CM, Dunton G | BMC public health | 27576358 | BMC Public Health | 2016 Aug 30 |
| Young adults' BMI and changes in romantic relationship status during the first semester of college. | van Woerden I, Brewis A, Hruschka D, Dunton G, Adams MA, Bruening M | PloS one | 32214397 | PLoS One | 2020 |
| The Association among Emotions and Food Choices in First-Year College Students Using mobile-Ecological Momentary Assessments. | Ashurst J, van Woerden I, Dunton G, Todd M, Ohri-Vachaspati P, Swan P, Bruening M | BMC public health | 29716572 | BMC Public Health | 2018 May 2 |
| A Mobile Ecological Momentary Assessment Tool (devilSPARC) for Nutrition and Physical Activity Behaviors in College Students: A Validation Study. | Bruening M, van Woerden I, Todd M, Brennhofer S, Laska MN, Dunton G | Journal of medical Internet research | 27465701 | J Med Internet Res | 2016 Jul 27 |
| Food Insecure College Students and Objective Measurements of Their Unused Meal Plans. | van Woerden I, Hruschka D, Vega-Lόpez S, Schaefer DR, Adams M, Bruening M | Nutrients | 31018554 | Nutrients | 2019 Apr 23 |
| The Struggle Is Real: A Systematic Review of Food Insecurity on Postsecondary Education Campuses. | Bruening M, Argo K, Payne-Sturges D, Laska MN | Journal of the Academy of Nutrition and Dietetics | 28754200 | J Acad Nutr Diet | 2017 Nov |
| Microbial Ecology and Metabolism of Emerging Adulthood: Gut Microbiome Insights from a College Freshman Cohort. | Mohr AE, Jasbi P, van Woerden I, Chi J, Gu H, Bruening M, Whisner CM | Gut microbes reports | 39221110 | Gut Microbes Rep | 2024 |
| Finding and Keeping Friends in College and Their Influence on Alcohol Use: A Network Analysis. | Schaefer DR, Van Woerden I, Hruschka D, Bruening M | Journal of studies on alcohol and drugs | 33573730 | J Stud Alcohol Drugs | 2021 Jan |
| Weight Shame, Social Connection, and Depressive Symptoms in Late Adolescence. | Brewis AA, Bruening M | International journal of environmental research and public health | 29723962 | Int J Environ Res Public Health | 2018 May 1 |
| Friendship as a social mechanism influencing body mass index (BMI) among emerging adults. | Bruening M, van Woerden I, Schaefer DR, Hruschka D, Brewis A, Whisner CM, Dunton GF, Todd M, Ohri-Vachaspati P, Laska MN | PloS one | 30562375 | PLoS One | 2018 |
| Hungry to learn: the prevalence and effects of food insecurity on health behaviors and outcomes over time among a diverse sample of university freshmen. | Bruening M, van Woerden I, Todd M, Laska MN | The international journal of behavioral nutrition and physical activity | 29347963 | Int J Behav Nutr Phys Act | 2018 Jan 18 |
| Factors Related to the High Rates of Food Insecurity among Diverse, Urban College Freshmen. | Bruening M, Brennhofer S, van Woerden I, Todd M, Laska M | Journal of the Academy of Nutrition and Dietetics | 27212147 | J Acad Nutr Diet | 2016 Sep |
| Social Mechanisms for Weight-related Behaviors among Emerging Adults. | Bruening M, Huberty J, Skelton K, Brennhofer S, Voytyuk M | Health behavior and policy review | 31867404 | Health Behav Policy Rev | 2017 Sep |
| Association of food insecurity on gut microbiome and metabolome profiles in a diverse college-based sample. | Mohr AE, Jasbi P, Vander Wyst KB, van Woerden I, Shi X, Gu H, Whisner CM, Bruening M | Scientific reports | 35999348 | Sci Rep | 2022 Aug 23 |
| Changes in Weight Status and the Intestinal Microbiota Among College Freshman, Aged 18 Years. | Journey EK, Ortega-Santos CP, Bruening M, Whisner CM | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 31477511 | J Adolesc Health | 2020 Feb |
| Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study. | Whisner CM, Maldonado J, Dente B, Krajmalnik-Brown R, Bruening M | BMC microbiology | 30541450 | BMC Microbiol | 2018 Dec 12 |
| Similarity in meal plan use among first-year roommates. | van Woerden I, Schaefer DR, Hruschka D, Vega-Lopez S, Adams M, Bruening M | Appetite | 31593746 | Appetite | 2020 Jan 1 |
| First-year college students' weight change is influenced by their randomly assigned roommates' BMI. | van Woerden I, Hruschka D, Brewis A, Schaefer DR, Bruening M | PloS one | 33232356 | PLoS One | 2020 |
| Gut microbiome diversity, variability, and latent community types compared with shifts in body weight during the freshman year of college in dormitory-housed adolescents. | Mohr AE, Ahern MM, Sears DD, Bruening M, Whisner CM | Gut microbes | 37642346 | Gut Microbes | 2023 Dec |
| Ketamine as a Prophylactic Against Stress-Induced Depressive-like Behavior. | Brachman RA, McGowan JC, Perusini JN, Lim SC, Pham TH, Faye C, Gardier AM, Mendez-David I, David DJ, Hen R, Denny CA | Biological psychiatry | 26037911 | Biol Psychiatry | 2016 May 1 |
| Prophylactic Ketamine Attenuates Learned Fear. | McGowan JC, LaGamma CT, Lim SC, Tsitsiklis M, Neria Y, Brachman RA, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 28128336 | Neuropsychopharmacology | 2017 Jul |
| Antidepressant but Not Prophylactic Ketamine Administration Alters Calretinin and Calbindin Expression in the Ventral Hippocampus. | LaGamma CT, Tang WW, Morgan AA, McGowan JC, Brachman RA, Denny CA | Frontiers in molecular neuroscience | 30459554 | Front Mol Neurosci | 2018 |
| Propranolol Decreases Fear Expression by Modulating Fear Memory Traces. | Leal Santos S, Stackmann M, Muñoz Zamora A, Mastrodonato A, De Landri AV, Vaughan N, Chen BK, Lanio M, Denny CA | Biological psychiatry | 33766406 | Biol Psychiatry | 2021 Jun 15 |
| Traumatic Brain Injury-Induced Fear Generalization in Mice Involves Hippocampal Memory Trace Dysfunction and Is Alleviated by (R,S)-Ketamine. | McGowan JC, Ladner LR, Shubeck CX, Tapia J, LaGamma CT, Anqueira-González A, DeFrancesco A, Chen BK, Hunsberger HC, Sydnor EJ, Logan RW, Yu TS, Kernie SG, Denny CA | Biological psychiatry | 37423591 | Biol Psychiatry | 2024 Jan 1 |
| Divergence in the metabolome between natural aging and Alzheimer's disease. | Hunsberger HC, Greenwood BP, Tolstikov V, Narain NR, Kiebish MA, Denny CA | Scientific reports | 32699218 | Sci Rep | 2020 Jul 22 |
| Sex-Specific Effects of Anxiety on Cognition and Activity-Dependent Neural Networks: Insights From (Female) Mice and (Wo)men. | Hunsberger HC, Lee S, Jin M, Lanio M, Whye A, Cha J, Scarlata M, Matthews LC, Jayaseelan K, Denny CA, Alzheimer’s Disease Neuroimaging Initiative | Biological psychiatry | 39349155 | Biol Psychiatry | 2025 May 1 |
| Sex-Specific Effects of Anxiety on Cognition and Activity-Dependent Neural Networks: Insights from (Female) Mice and (Wo)Men. | Hunsberger HC, Lee S, Jin M, Lanio M, Whye A, Cha J, Scarlata M, Jayaseelan K, Denny CA | bioRxiv : the preprint server for biology | 37503264 | bioRxiv | 2023 Jul 10 |
| Improved specificity of hippocampal memory trace labeling. | Cazzulino AS, Martinez R, Tomm NK, Denny CA | Hippocampus | 26662713 | Hippocampus | 2016 Jun |
| Hippocampal memory traces are differentially modulated by experience, time, and adult neurogenesis. | Denny CA, Kheirbek MA, Alba EL, Tanaka KF, Brachman RA, Laughman KB, Tomm NK, Turi GF, Losonczy A, Hen R | Neuron | 24991962 | Neuron | 2014 Jul 2 |
| Ventral CA3 Activation Mediates Prophylactic Ketamine Efficacy Against Stress-Induced Depressive-like Behavior. | Mastrodonato A, Martinez R, Pavlova IP, LaGamma CT, Brachman RA, Robison AJ, Denny CA | Biological psychiatry | 29615190 | Biol Psychiatry | 2018 Dec 1 |
| Adult-born hippocampal neurons bidirectionally modulate entorhinal inputs into the dentate gyrus. | Luna VM, Anacker C, Burghardt NS, Khandaker H, Andreu V, Millette A, Leary P, Ravenelle R, Jimenez JC, Mastrodonato A, Denny CA, Fenton AA, Scharfman HE, Hen R | Science (New York, N.Y.) | 31073064 | Science | 2019 May 10 |
| Distinct hippocampal engrams control extinction and relapse of fear memory. | Lacagnina AF, Brockway ET, Crovetti CR, Shue F, McCarty MJ, Sattler KP, Lim SC, Santos SL, Denny CA, Drew MR | Nature neuroscience | 30936555 | Nat Neurosci | 2019 May |
| Optimization of immunolabeling and clearing techniques for indelibly labeled memory traces. | Pavlova IP, Shipley SC, Lanio M, Hen R, Denny CA | Hippocampus | 29663578 | Hippocampus | 2018 Jul |
| Optogenetic stimulation of dentate gyrus engrams restores memory in Alzheimer's disease mice. | Perusini JN, Cajigas SA, Cohensedgh O, Lim SC, Pavlova IP, Donaldson ZR, Denny CA | Hippocampus | 28667669 | Hippocampus | 2017 Oct |
| Activation of local inhibitory circuits in the dentate gyrus by adult-born neurons. | Drew LJ, Kheirbek MA, Luna VM, Denny CA, Cloidt MA, Wu MV, Jain S, Scharfman HE, Hen R | Hippocampus | 26662922 | Hippocampus | 2016 Jun |
| Prophylactic ketamine alters nucleotide and neurotransmitter metabolism in brain and plasma following stress. | McGowan JC, Hill C, Mastrodonato A, LaGamma CT, Kitayev A, Brachman RA, Narain NR, Kiebish MA, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 29599484 | Neuropsychopharmacology | 2018 Aug |
| Prophylactic (R,S)-ketamine selectively protects against inflammatory stressors. | Mastrodonato A, Cohensedgh O, LaGamma CT, McGowan JC, Hunsberger HC, Denny CA | Behavioural brain research | 31563463 | Behav Brain Res | 2020 Jan 27 |
| Common Neurotransmission Recruited in (R,S)-Ketamine and (2R,6R)-Hydroxynorketamine-Induced Sustained Antidepressant-like Effects. | Pham TH, Defaix C, Xu X, Deng SX, Fabresse N, Alvarez JC, Landry DW, Brachman RA, Denny CA, Gardier AM | Biological psychiatry | 29174592 | Biol Psychiatry | 2018 Jul 1 |
| Sex-specific neurobiological actions of prophylactic (R,S)-ketamine, (2R,6R)-hydroxynorketamine, and (2S,6S)-hydroxynorketamine. | Chen BK, Luna VM, LaGamma CT, Xu X, Deng SX, Suckow RF, Cooper TB, Shah A, Brachman RA, Mendez-David I, David DJ, Gardier AM, Landry DW, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32417852 | Neuropsychopharmacology | 2020 Aug |
| The participation of cortical amygdala in innate, odour-driven behaviour. | Root CM, Denny CA, Hen R, Axel R | Nature | 25383519 | Nature | 2014 Nov 13 |
| Recent Advances in Higher-Order, Multimodal, Biomedical Imaging Agents. | Rieffel J, Chitgupi U, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 26185099 | Small | 2015 Sep 16 |
| Design of Hydrated Porphyrin-Phospholipid Bilayers with Enhanced Magnetic Resonance Contrast. | Shao S, Do TN, Razi A, Chitgupi U, Geng J, Alsop RJ, Dzikovski BG, Rheinstädter MC, Ortega J, Karttunen M, Spernyak JA, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 27739249 | Small | 2017 Jan |
| Assessing Photosensitizer Targeting Using Meso-Tetra(Carboxyphenyl) Porphyrin. | Chitgupi U, Lovell JF, Rajendiran V | Molecules (Basel, Switzerland) | 29649139 | Molecules | 2018 Apr 12 |
| Indocyanine green binds to DOTAP liposomes for enhanced optical properties and tumor photoablation. | Miranda D, Wan C, Kilian HI, Mabrouk MT, Zhou Y, Jin H, Lovell JF | Biomaterials science | 31232421 | Biomater Sci | 2019 Aug 1 |
| Axial PEGylation of Tin Octabutoxy Naphthalocyanine Extends Blood Circulation for Photoacoustic Vascular Imaging. | Huang H, Wang D, Zhang Y, Zhou Y, Geng J, Chitgupi U, Cook TR, Xia J, Lovell JF | Bioconjugate chemistry | 27259401 | Bioconjug Chem | 2016 Jul 20 |
| Vessel-Targeted Chemophototherapy with Cationic Porphyrin-Phospholipid Liposomes. | Luo D, Geng J, Li N, Carter KA, Shao S, Atilla-Gokcumen GE, Lovell JF | Molecular cancer therapeutics | 28729400 | Mol Cancer Ther | 2017 Nov |
| Short Drug-Light Intervals Improve Liposomal Chemophototherapy in Mice Bearing MIA PaCa-2 Xenografts. | Luo D, Carter KA, Geng J, He X, Lovell JF | Molecular pharmaceutics | 29608312 | Mol Pharm | 2018 Sep 4 |
| A malaria vaccine adjuvant based on recombinant antigen binding to liposomes. | Huang WC, Deng B, Lin C, Carter KA, Geng J, Razi A, He X, Chitgupi U, Federizon J, Sun B, Long CA, Ortega J, Dutta S, King CR, Miura K, Lee SM, Lovell JF | Nature nanotechnology | 30297818 | Nat Nanotechnol | 2018 Dec |
| Non-invasive multimodal functional imaging of the intestine with frozen micellar naphthalocyanines. | Zhang Y, Jeon M, Rich LJ, Hong H, Geng J, Zhang Y, Shi S, Barnhart TE, Alexandridis P, Huizinga JD, Seshadri M, Cai W, Kim C, Lovell JF | Nature nanotechnology | 24997526 | Nat Nanotechnol | 2014 Aug |
| A porphyrin-PEG polymer with rapid renal clearance. | Huang H, Hernandez R, Geng J, Sun H, Song W, Chen F, Graves SA, Nickles RJ, Cheng C, Cai W, Lovell JF | Biomaterials | 26517562 | Biomaterials | 2016 Jan |
| Emerging applications of porphyrins in photomedicine. | Huang H, Song W, Rieffel J, Lovell JF | Frontiers in physics | 28553633 | Front Phys | 2015 Apr |
| Pd-porphyrin-cross-linked implantable hydrogels with oxygen-responsive phosphorescence. | Huang H, Song W, Chen G, Reynard JM, Ohulchanskyy TY, Prasad PN, Bright FV, Lovell JF | Advanced healthcare materials | 24259519 | Adv Healthc Mater | 2014 Jun |
| Hexamodal imaging with porphyrin-phospholipid-coated upconversion nanoparticles. | Rieffel J, Chen F, Kim J, Chen G, Shao W, Shao S, Chitgupi U, Hernandez R, Graves SA, Nickles RJ, Prasad PN, Kim C, Cai W, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 25640213 | Adv Mater | 2015 Mar 11 |
| Membrane Disruption by Very Long Chain Fatty Acids during Necroptosis. | Parisi LR, Sowlati-Hashjin S, Berhane IA, Galster SL, Carter KA, Lovell JF, Chemler SR, Karttunen M, Atilla-Gokcumen GE | ACS chemical biology | 31490656 | ACS Chem Biol | 2019 Oct 18 |
| Highly-Soluble Cyanine J-aggregates Entrapped by Liposomes for In Vivo Optical Imaging around 930 nm. | Miranda D, Huang H, Kang H, Zhan Y, Wang D, Zhou Y, Geng J, Kilian HI, Stiles W, Razi A, Ortega J, Xia J, Choi HS, Lovell JF | Theranostics | 30809281 | Theranostics | 2019 |
| Sulfonated Polyethylenimine for Photosensitizer Conjugation and Targeting. | Chitgupi U, Zhang Y, Lo CY, Shao S, Song W, Geng J, Neelamegham S, Lovell JF | Bioconjugate chemistry | 26057017 | Bioconjug Chem | 2015 Aug 19 |
| Reversible Micro- and Nano- Phase Programming of Anthraquinone Thermochromism Using Blended Block Copolymers. | Zhang Y, Lovell JF | Langmuir : the ACS journal of surfaces and colloids | 26626998 | Langmuir | 2015 Dec 22 |
| Surfactant-Stripped Frozen Pheophytin Micelles for Multimodal Gut Imaging. | Zhang Y, Wang D, Goel S, Sun B, Chitgupi U, Geng J, Sun H, Barnhart TE, Cai W, Xia J, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 27396479 | Adv Mater | 2016 Oct |
| Coherent-weighted three-dimensional image reconstruction in linear-array-based photoacoustic tomography. | Wang D, Wang Y, Zhou Y, Lovell JF, Xia J | Biomedical optics express | 27231634 | Biomed Opt Express | 2016 May 1 |
| Dual-color photoacoustic lymph node imaging using nanoformulated naphthalocyanines. | Lee C, Kim J, Zhang Y, Jeon M, Liu C, Song L, Lovell JF, Kim C | Biomaterials | 26408999 | Biomaterials | 2015 Dec |
| Sound Out the Deep Colors: Photoacoustic Molecular Imaging at New Depths. | Li M, Nyayapathi N, Kilian HI, Xia J, Lovell JF, Yao J | Molecular imaging | 33336621 | Mol Imaging | 2020 Jan-Dec |
| Surfactant-stripped naphthalocyanines for multimodal tumor theranostics with upconversion guidance cream. | Zhang Y, Hong H, Sun B, Carter K, Qin Y, Wei W, Wang D, Jeon M, Geng J, Nickles RJ, Chen G, Prasad PN, Kim C, Xia J, Cai W, Lovell JF | Nanoscale | 28247896 | Nanoscale | 2017 Mar 9 |
| Pharmacokinetics and pharmacodynamics of liposomal chemophototherapy with short drug-light intervals. | Luo D, Carter KA, Molins EAG, Straubinger NL, Geng J, Shao S, Jusko WJ, Straubinger RM, Lovell JF | Journal of controlled release : official journal of the Controlled Release Society | 30684512 | J Control Release | 2019 Mar 10 |
| Binding of an amphiphilic phthalocyanine to pre-formed liposomes confers light-triggered cargo release. | Macháček M, Carter KA, Kostelanský F, Miranda D, Seffouh A, Ortega J, Šimůnek T, Zimčík P, Lovell JF | Journal of materials chemistry. B | 30984399 | J Mater Chem B | 2018 Nov 28 |
| Naphthalocyanines as contrast agents for photoacoustic and multimodal imaging. | Chitgupi U, Lovell JF | Biomedical engineering letters | 30603204 | Biomed Eng Lett | 2018 May |
| Enhanced drug delivery using sonoactivatable liposomes with membrane-embedded porphyrins. | Wang X, Yan F, Liu X, Wang P, Shao S, Sun Y, Sheng Z, Liu Q, Lovell JF, Zheng H | Journal of controlled release : official journal of the Controlled Release Society | 30075210 | J Control Release | 2018 Sep 28 |
| Porphyrin-phospholipid liposomes permeabilized by near-infrared light. | Carter KA, Shao S, Hoopes MI, Luo D, Ahsan B, Grigoryants VM, Song W, Huang H, Zhang G, Pandey RK, Geng J, Pfeifer BA, Scholes CP, Ortega J, Karttunen M, Lovell JF | Nature communications | 24699423 | Nat Commun | 2014 Apr 3 |
| A surfactant-stripped cabazitaxel micelle formulation optimized with accelerated storage stability. | Sun B, Jing H, Mabrouk MT, Zhang Y, Jin H, Lovell JF | Pharmaceutical development and technology | 32892678 | Pharm Dev Technol | 2020 Dec |
| Trans-illumination intestine projection imaging of intestinal motility in mice. | Wang D, Zhang H, Vu T, Zhan Y, Malhotra A, Wang P, Chitgupi U, Rai A, Zhang S, Wang L, Huizinga JD, Lovell JF, Xia J | Nature communications | 33727562 | Nat Commun | 2021 Mar 16 |
| Bimodal Targeting Using Sulfonated, Mannosylated PEI for Combined Gene Delivery and Photodynamic Therapy. | Chitgupi U, Li Y, Chen M, Shao S, Beitelshees M, Tan MJ, Neelamegham S, Pfeifer BA, Jones C, Lovell JF | Photochemistry and photobiology | 27935058 | Photochem Photobiol | 2017 Mar |
| Implantable Tin Porphyrin-PEG Hydrogels with pH-Responsive Fluorescence. | Huang H, Chauhan S, Geng J, Qin Y, Watson DF, Lovell JF | Biomacromolecules | 28146351 | Biomacromolecules | 2017 Feb 13 |
| Chemophototherapy: An Emerging Treatment Option for Solid Tumors. | Luo D, Carter KA, Miranda D, Lovell JF | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 28105389 | Adv Sci (Weinh) | 2017 Jan |
| Rapid Light-Triggered Drug Release in Liposomes Containing Small Amounts of Unsaturated and Porphyrin-Phospholipids. | Luo D, Li N, Carter KA, Lin C, Geng J, Shao S, Huang WC, Qin Y, Atilla-Gokcumen GE, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 27121003 | Small | 2016 Jun |
| Therapeutic surfactant-stripped frozen micelles. | Zhang Y, Song W, Geng J, Chitgupi U, Unsal H, Federizon J, Rzayev J, Sukumaran DK, Alexandridis P, Lovell JF | Nature communications | 27193558 | Nat Commun | 2016 May 19 |
| Facile formulation of a long-wavelength cyanine for optical imaging in the second near-infrared window. | Kilian HI , Kang H , Nyayapathi N , Fukuda T , Adluru E , Zhang H , Quinn B , Xia J , Choi HS , Lovell JF | Biomaterials science | 32515752 | Biomater Sci | 2020 Aug 7 |
| Antibody response of a particle-inducing, liposome vaccine adjuvant admixed with a Pfs230 fragment. | Huang WC, Deng B, Seffouh A, Ortega J, Long CA, Suresh RV, He X, Miura K, Lee SM, Wu Y, Lovell JF | NPJ vaccines | 32218995 | NPJ Vaccines | 2020 |
| Photoactivation of sulfonated polyplexes enables localized gene silencing by DsiRNA in breast cancer cells. | Puri A, Viard M, Zakrevsky P, Zampino S, Chen A, Isemann C, Alvi S, Clogston J, Chitgupi U, Lovell JF, Shapiro BA | Nanomedicine : nanotechnology, biology, and medicine | 32151748 | Nanomedicine | 2020 Jun |
| Ingestible roasted barley for contrast-enhanced photoacoustic imaging in animal and human subjects. | Wang D, Lee DH, Huang H, Vu T, Lim RSA, Nyayapathi N, Chitgupi U, Liu M, Geng J, Xia J, Lovell JF | Biomaterials | 29803105 | Biomaterials | 2018 Aug |
| Advanced Functional Nanomaterials for Theranostics. | Huang H, Lovell JF | Advanced functional materials | 28824357 | Adv Funct Mater | 2017 Jan 12 |
| Mechanisms of Light-induced Liposome Permeabilization. | Miranda D, Lovell JF | Bioengineering & translational medicine | 28367505 | Bioeng Transl Med | 2016 Sep |
| Immunogenicity of the Lyme disease antigen OspA, particleized by cobalt porphyrin-phospholipid liposomes. | Federizon J, Frye A, Huang WC, Hart TM, He X, Beltran C, Marcinkiewicz AL, Mainprize IL, Wills MKB, Lin YP, Lovell JF | Vaccine | 31727504 | Vaccine | 2020 Jan 22 |
| Doxorubicin encapsulated in stealth liposomes conferred with light-triggered drug release. | Luo D, Carter KA, Razi A, Geng J, Shao S, Giraldo D, Sunar U, Ortega J, Lovell JF | Biomaterials | 26513413 | Biomaterials | 2016 Jan |
| Porphyrin-phospholipid liposomes with tunable leakiness. | Luo D, Carter KA, Razi A, Geng J, Shao S, Lin C, Ortega J, Lovell JF | Journal of controlled release : official journal of the Controlled Release Society | 26578438 | J Control Release | 2015 Dec 28 |
| Sphingomyelin Liposomes Containing Porphyrin-phospholipid for Irinotecan Chemophototherapy. | Carter KA, Luo D, Razi A, Geng J, Shao S, Ortega J, Lovell JF | Theranostics | 27877238 | Theranostics | 2016 |
| Functionalization of cobalt porphyrin-phospholipid bilayers with his-tagged ligands and antigens. | Shao S, Geng J, Ah Yi H, Gogia S, Neelamegham S, Jacobs A, Lovell JF | Nature chemistry | 25901823 | Nat Chem | 2015 May |
| An Engineered Biomimetic MPER Peptide Vaccine Induces Weakly HIV Neutralizing Antibodies in Mice. | Shao S, Huang WC, Lin C, Hicar MD, LaBranche CC, Montefiori DC, Lovell JF | Annals of biomedical engineering | 31832930 | Ann Biomed Eng | 2020 Jul |
| Surfactant-Stripped Pheophytin Micelles for Multimodal Tumor Imaging and Photodynamic Therapy. | Moukheiber D, Chitgupi U, Carter KA, Luo D, Sun B, Goel S, Ferreira CA, Engle JW, Wang D, Geng J, Zhang Y, Xia J, Cai W, Lovell JF | ACS applied bio materials | 31853516 | ACS Appl Bio Mater | 2019 Jan 22 |
| Liposomal formulations of photosensitizers. | Ghosh S, Carter KA, Lovell JF | Biomaterials | 31336279 | Biomaterials | 2019 Oct |
| Surfactant-Stripped Micelles for NIR-II Photoacoustic Imaging through 12 cm of Breast Tissue and Whole Human Breasts. | Chitgupi U, Nyayapathi N, Kim J, Wang D, Sun B, Li C, Carter K, Huang WC, Kim C, Xia J, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 31414515 | Adv Mater | 2019 Oct |
| Metalloporphyrin Nanoparticles: Coordinating Diverse Theranostic Functions. | Shao S, Rajendiran V, Lovell JF | Coordination chemistry reviews | 30559508 | Coord Chem Rev | 2019 Jan 15 |
| Metal Chelation Modulates Phototherapeutic Properties of Mitoxantrone-Loaded Porphyrin-Phospholipid Liposomes. | Carter KA, Wang S, Geng J, Luo D, Shao S, Lovell JF | Molecular pharmaceutics | 26691879 | Mol Pharm | 2016 Feb 1 |
| Slit-enabled linear-array photoacoustic tomography with near isotropic spatial resolution in three dimensions. | Wang Y, Wang D, Zhang Y, Geng J, Lovell JF, Xia J | Optics letters | 26696175 | Opt Lett | 2016 Jan 1 |
| Loading and Releasing Ciprofloxacin in Photoactivatable Liposomes. | Ghosh S, Qi R, Carter KA, Zhang G, Pfeifer BA, Lovell JF | Biochemical engineering journal | 31105464 | Biochem Eng J | 2019 Jan 15 |
| Nanomedical engineering: shaping future nanomedicines. | Luo D, Carter KA, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 25377691 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2015 Mar-Apr |
| Antigen Engineering Approaches for Lyme Disease Vaccines. | Federizon J, Lin YP, Lovell JF | Bioconjugate chemistry | 30987418 | Bioconjug Chem | 2019 May 15 |
| Blood Interactions, Pharmacokinetics, and Depth-Dependent Ablation of Rat Mammary Tumors with Photoactivatable, Liposomal Doxorubicin. | Carter KA, Luo D, Geng J, Stern ST, Lovell JF | Molecular cancer therapeutics | 30587558 | Mol Cancer Ther | 2019 Mar |
| Engineered Nanoparticle Applications for Recombinant Influenza Vaccines. | Sia ZR, Miller MS, Lovell JF | Molecular pharmaceutics | 32787280 | Mol Pharm | 2021 Feb 1 |
| Clinical development and potential of photothermal and photodynamic therapies for cancer. | Li X, Lovell JF, Yoon J, Chen X | Nature reviews. Clinical oncology | 32699309 | Nat Rev Clin Oncol | 2020 Nov |
| A Phosphorus Phthalocyanine Formulation with Intense Absorbance at 1000 nm for Deep Optical Imaging. | Zhou Y, Wang D, Zhang Y, Chitgupi U, Geng J, Wang Y, Zhang Y, Cook TR, Xia J, Lovell JF | Theranostics | 27022416 | Theranostics | 2016 |
| Multifunctional Liposomes for Image-Guided Intratumoral Chemo-Phototherapy. | Miranda D, Carter K, Luo D, Shao S, Geng J, Li C, Chitgupi U, Turowski SG, Li N, Atilla-Gokcumen GE, Spernyak JA, Lovell JF | Advanced healthcare materials | 28504409 | Adv Healthc Mater | 2017 Aug |
| Directed vaccination against pneumococcal disease. | Li Y, Hill A, Beitelshees M, Shao S, Lovell JF, Davidson BA, Knight PR 3rd, Hakansson AP, Pfeifer BA, Jones CH | Proceedings of the National Academy of Sciences of the United States of America | 27274071 | Proc Natl Acad Sci U S A | 2016 Jun 21 |
| Recent applications of phthalocyanines and naphthalocyanines for imaging and therapy. | Zhang Y, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 27439671 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2017 Jan |
| Intrabilayer (64)Cu Labeling of Photoactivatable, Doxorubicin-Loaded Stealth Liposomes. | Luo D, Goel S, Liu HJ, Carter KA, Jiang D, Geng J, Kutyreff CJ, Engle JW, Huang WC, Shao S, Fang C, Cai W, Lovell JF | ACS nano | 29195037 | ACS Nano | 2017 Dec 26 |
| Folate-Targeted Nanoliposomal Chemophototherapy. | Chitgupi U, Qin Y, Ghosh S, Quinn B, Carter K, He X, Sunar U, Lovell JF | Pharmaceutics | 37896144 | Pharmaceutics | 2023 Sep 26 |
| Chronic Disease Prevalence and Healthy Lifestyle Behaviors Among US Health Care Professionals. | Dayoub E, Jena AB | Mayo Clinic proceedings | 26422242 | Mayo Clin Proc | 2015 Dec |
| Sex Differences in Academic Rank in US Medical Schools in 2014. | Jena AB, Khullar D, Ho O, Olenski AR, Blumenthal DM | JAMA | 26372584 | JAMA | 2015 Sep 15 |
| Reducing Diagnostic Errors--Why Now? | Khullar D, Jha AK, Jena AB | The New England journal of medicine | 26397948 | N Engl J Med | 2015 Dec 24 |
| The Trade-off Between Speed and Safety in Drug Approvals. | Jena AB, Zhang J, Lakdawalla DN | JAMA oncology | 27684643 | JAMA Oncol | 2017 Nov 1 |
| Delays in Emergency Care and Mortality during Major U.S. Marathons. | Jena AB, Mann NC, Wedlund LN, Olenski A | The New England journal of medicine | 28402772 | N Engl J Med | 2017 Apr 13 |
| Rates and Characteristics of Paid Malpractice Claims Among US Physicians by Specialty, 1992-2014. | Schaffer AC, Jena AB, Seabury SA, Singh H, Chalasani V, Kachalia A | JAMA internal medicine | 28346582 | JAMA Intern Med | 2017 May 1 |
| Quality of care delivered by general internists in US hospitals who graduated from foreign versus US medical schools: observational study. | Tsugawa Y, Jena AB, Orav EJ, Jha AK | BMJ (Clinical research ed.) | 28153977 | BMJ | 2017 Feb 2 |
| Association of Overlapping Surgery With Perioperative Outcomes. | Sun E, Mello MM, Rishel CA, Vaughn MT, Kheterpal S, Saager L, Fleisher LA, Damrose EJ, Kadry B, Jena AB, Multicenter Perioperative Outcomes Group (MPOG) | JAMA | 30806696 | JAMA | 2019 Feb 26 |
| Association between physician US News & World Report medical school ranking and patient outcomes and costs of care: observational study. | Tsugawa Y, Blumenthal DM, Jha AK, Orav EJ, Jena AB | BMJ (Clinical research ed.) | 30257919 | BMJ | 2018 Sep 26 |
| Characteristics of Physicians Who Adopted Medicare's New Advance Care Planning Codes in the First Year. | Tsugawa Y, Kato H, Jha AK, Wenger NS, Zingmond DS, Gross N, Jena AB | Journal of general internal medicine | 31637655 | J Gen Intern Med | 2020 Jun |
| Trends in the Price per Median and Mean Life-Year Gained Among Newly Approved Cancer Therapies 1995 to 2017. | Chen AJ, Hu X, Conti RM, Jena AB, Goldman DP | Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research | 31806195 | Value Health | 2019 Dec |
| Gender differences in how scientists present the importance of their research: observational study. | Lerchenmueller MJ, Sorenson O, Jena AB | BMJ (Clinical research ed.) | 31843745 | BMJ | 2019 Dec 16 |
| Do heads of government age more quickly? Observational study comparing mortality between elected leaders and runners-up in national elections of 17 countries. | Olenski AR, Abola MV, Jena AB | BMJ (Clinical research ed.) | 26666894 | BMJ | 2015 Dec 14 |
| Exposing physicians to reduced residency work hours did not adversely affect patient outcomes after residency. | Jena AB, Schoemaker L, Bhattacharya J | Health affairs (Project Hope) | 25288430 | Health Aff (Millwood) | 2014 Oct |
| Association between treatment toxicity and outcomes in oncology clinical trials. | Abola MV, Prasad V, Jena AB | Annals of oncology : official journal of the European Society for Medical Oncology | 25193993 | Ann Oncol | 2014 Nov |
| Outcomes of Basic Versus Advanced Life Support for Out-of-Hospital Medical Emergencies. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Annals of internal medicine | 26457627 | Ann Intern Med | 2015 Nov 3 |
| The Impact of the US Food and Drug Administration Chlorofluorocarbon Ban on Out-of-pocket Costs and Use of Albuterol Inhalers Among Individuals With Asthma. | Jena AB, Ho O, Goldman DP, Karaca-Mandic P | JAMA internal medicine | 25962128 | JAMA Intern Med | 2015 Jul |
| Patterns of Potential Opioid Misuse and Subsequent Adverse Outcomes in Medicare, 2008 to 2012. | Carey CM, Jena AB, Barnett ML | Annals of internal medicine | 29800019 | Ann Intern Med | 2018 Jun 19 |
| Tying Reimbursement to Outcomes Is an Ideal Strategy for PCSK9 Inhibitors. | Blumenthal DM, Goldman D, Jena AB | JAMA cardiology | 28854318 | JAMA Cardiol | 2017 Oct 1 |
| Turning evidence into practice under payment reform: the new frontier of translational science. | Jena AB, Stevens W, McWilliams JM | Journal of general internal medicine | 25092013 | J Gen Intern Med | 2014 Nov |
| Long-term effects of the 2003 ACGME resident duty hour reform on hospital mortality. | Jena AB, Prasad V, Romley JA | Mayo Clinic proceedings | 24996240 | Mayo Clin Proc | 2014 Jul |
| Regression discontinuity designs in healthcare research. | Venkataramani AS, Bor J, Jena AB | BMJ (Clinical research ed.) | 26977086 | BMJ | 2016 Mar 14 |
| Screening Mammography for Free: Impact of Eliminating Cost Sharing on Cancer Screening Rates. | Jena AB, Huang J, Fireman B, Fung V, Gazelle S, Landrum MB, Chernew M, Newhouse JP, Hsu J | Health services research | 26990550 | Health Serv Res | 2017 Feb |
| Reducing prognostic errors: a new imperative in quality healthcare. | Khullar D, Jena AB | BMJ (Clinical research ed.) | 26993146 | BMJ | 2016 Mar 18 |
| Outcomes after out-of-hospital cardiac arrest treated by basic vs advanced life support. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | JAMA internal medicine | 25419698 | JAMA Intern Med | 2015 Feb |
| Decline and Rebound in Routine Cancer Screening Rates During the COVID-19 Pandemic. | McBain RK, Cantor JH, Jena AB, Pera MF, Bravata DM, Whaley CM | Journal of general internal medicine | 33742300 | J Gen Intern Med | 2021 Jun |
| Characteristics of Physicians Excluded From US Medicare and State Public Insurance Programs for Fraud, Health Crimes, or Unlawful Prescribing of Controlled Substances. | Chen A, Blumenthal DM, Jena AB | JAMA network open | 30646294 | JAMA Netw Open | 2018 Dec 7 |
| Comparison of Anesthesia Times and Billing Patterns by Anesthesia Practitioners. | Sun EC, Dutton RP, Jena AB | JAMA network open | 30646351 | JAMA Netw Open | 2018 Nov 2 |
| Trends in New Diagnoses of Atrial Fibrillation After Release of an ECG-Capable Smartwatch. | Zimerman A, Sheridan B, Cooke S, Jena AB | Circulation | 32833515 | Circulation | 2020 Aug 25 |
| Careful use of science to advance the debate on the UK Cancer Drugs Fund. | Lakdawalla DN, Jena AB, Doctor JN | JAMA | 24381964 | JAMA | 2014 Jan 1 |
| Opioid prescribing by multiple providers in Medicare: retrospective observational study of insurance claims. | Jena AB, Goldman D, Weaver L, Karaca-Mandic P | BMJ (Clinical research ed.) | 24553363 | BMJ | 2014 Feb 19 |
| Proportion of Non-US-Born and Noncitizen Health Care Professionals in the United States in 2016. | Patel YM, Ly DP, Hicks T, Jena AB | JAMA | 30512091 | JAMA | 2018 Dec 4 |
| Distribution of Prescription Opioid Use Among Privately Insured Adults Without Cancer: United States, 2001 to 2013. | Sun EC, Jena AB | Annals of internal medicine | 28892817 | Ann Intern Med | 2017 Nov 7 |
| Sex Differences in Time Spent on Household Activities and Care of Children Among US Physicians, 2003-2016. | Ly DP, Jena AB | Mayo Clinic proceedings | 29673711 | Mayo Clin Proc | 2018 Oct |
| Medical malpractice reform: noneconomic damages caps reduced payments 15 percent, with varied effects by specialty. | Seabury SA, Helland E, Jena AB | Health affairs (Project Hope) | 25339633 | Health Aff (Millwood) | 2014 Nov |
| Incidence of sexually transmitted infections after human papillomavirus vaccination among adolescent females. | Jena AB, Goldman DP, Seabury SA | JAMA internal medicine | 25664968 | JAMA Intern Med | 2015 Apr |
| Mortality and treatment patterns among patients hospitalized with acute cardiovascular conditions during dates of national cardiology meetings. | Jena AB, Prasad V, Goldman DP, Romley J | JAMA internal medicine | 25531231 | JAMA Intern Med | 2015 Feb |
| Association of Grit Scores With Treatment Adherence and Biomarkers in Patients With Type 2 Diabetes. | Peña PA, Pérez-Díaz I, Pulido-Ayala AK, Osorio-Landa HK, López-Navarro JM, Duckworth AL, Jena AB | JAMA network open | 31517961 | JAMA Netw Open | 2019 Sep 4 |
| Factors Associated with Psychiatrist Opt-out from US Medicare: an Observational Study. | Yu J, Jena AB, Mandic PK, Golberstein E | Journal of general internal medicine | 31420824 | J Gen Intern Med | 2019 Nov |
| Patient and provider-level factors associated with changes in utilization of treatments in response to evidence on ineffectiveness or harm. | Smith LB, Desai NR, Dowd B, Everhart A, Herrin J, Higuera L, Jeffery MM, Jena AB, Ross JS, Shah ND, Karaca-Mandic P | International journal of health economics and management | 32350680 | Int J Health Econ Manag | 2020 Sep |
| Birth Month and Influenza Vaccination in Children. | Worsham C, Woo J, Jena AB | The New England journal of medicine | 32640138 | N Engl J Med | 2020 Jul 9 |
| Longitudinal analyses of gender differences in first authorship publications related to COVID-19. | Lerchenmüller C, Schmallenbach L, Jena AB, Lerchenmueller MJ | BMJ open | 33820790 | BMJ Open | 2021 Apr 5 |
| Physician Network Connections Associated With Faster De-Adoption of Dronedarone for Permanent Atrial Fibrillation. | Stecher C, Everhart A, Smith LB, Jena A, Ross JS, Desai NR, Shah N, Karaca-Mandic P | Circulation. Cardiovascular quality and outcomes | 34555928 | Circ Cardiovasc Qual Outcomes | 2021 Oct |
| Outcomes of Basic Versus Advanced Life Support for Out-of-Hospital Medical Emergencies. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Annals of internal medicine | 27380156 | Ann Intern Med | 2016 Jul 5 |
| Association of a Clinician's Antibiotic-Prescribing Rate With Patients' Future Likelihood of Seeking Care and Receipt of Antibiotics. | Shi Z, Barnett ML, Jena AB, Ray KN, Fox KP, Mehrotra A | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 32777032 | Clin Infect Dis | 2021 Oct 5 |
| Patient Mortality During Unannounced Accreditation Surveys at US Hospitals. | Barnett ML, Olenski AR, Jena AB | JAMA internal medicine | 28319229 | JAMA Intern Med | 2017 May 1 |
| Association Between Treatment by Locum Tenens Internal Medicine Physicians and 30-Day Mortality Among Hospitalized Medicare Beneficiaries. | Blumenthal DM, Olenski AR, Tsugawa Y, Jena AB | JAMA | 29209722 | JAMA | 2017 Dec 5 |
| Does Medical Malpractice Law Improve Health Care Quality? | Frakes M, Jena AB | Journal of public economics | 28479642 | J Public Econ | 2016 Nov |
| Physician age and outcomes in elderly patients in hospital in the US: observational study. | Tsugawa Y, Newhouse JP, Zaslavsky AM, Blumenthal DM, Jena AB | BMJ (Clinical research ed.) | 28512089 | BMJ | 2017 May 16 |
| Health and Health Care Use Among Individuals at Risk to Lose Health Insurance With Repeal of the Affordable Care Act. | Karaca-Mandic P, Jena AB, Ross JS | JAMA internal medicine | 28114528 | JAMA Intern Med | 2017 Apr 1 |
| Early death after discharge from emergency departments: analysis of national US insurance claims data. | Obermeyer Z, Cohn B, Wilson M, Jena AB, Cutler DM | BMJ (Clinical research ed.) | 28148486 | BMJ | 2017 Feb 1 |
| Mortality among high-risk patients with acute myocardial infarction admitted to U.S. teaching-intensive hospitals in July: a retrospective observational study. | Jena AB, Sun EC, Romley JA | Circulation | 24152859 | Circulation | 2013 Dec 24 |
| Does medicine run in the family-evidence from three generations of physicians in Sweden: retrospective observational study. | Polyakova M, Persson P, Hofmann K, Jena AB | BMJ (Clinical research ed.) | 33328192 | BMJ | 2020 Dec 16 |
| U.S. Immigration Policy and American Medical Research: The Scientific Contributions of Foreign Medical Graduates. | Khullar D, Blumenthal DM, Olenski AR, Jena AB | Annals of internal medicine | 28973126 | Ann Intern Med | 2017 Oct 17 |
| Association between rainfall and diagnoses of joint or back pain: retrospective claims analysis. | Jena AB, Olenski AR, Molitor D, Miller N | BMJ (Clinical research ed.) | 29237605 | BMJ | 2017 Dec 13 |
| Outcomes-Based Pricing as a Tool to Ensure Access to Novel but Expensive Biopharmaceuticals. | Blumenthal DM, Goldman DP, Jena AB | Annals of internal medicine | 27951598 | Ann Intern Med | 2017 Feb 7 |
| Comparison of Hospital Mortality and Readmission Rates for Medicare Patients Treated by Male vs Female Physicians. | Tsugawa Y, Jena AB, Figueroa JF, Orav EJ, Blumenthal DM, Jha AK | JAMA internal medicine | 27992617 | JAMA Intern Med | 2017 Feb 1 |
| Sex Differences in Faculty Rank Among Academic Cardiologists in the United States. | Blumenthal DM, Olenski AR, Yeh RW, DeFaria Yeh D, Sarma A, Stefanescu Schmidt AC, Wood MJ, Jena AB | Circulation | 28153987 | Circulation | 2017 Feb 7 |
| Hospital Prescribing of Opioids to Medicare Beneficiaries. | Jena AB, Goldman D, Karaca-Mandic P | JAMA internal medicine | 27294595 | JAMA Intern Med | 2016 Jul 1 |
| The Peltzman effect and compensatory markers in medicine. | Prasad V, Jena AB | Healthcare (Amsterdam, Netherlands) | 25396116 | Healthc (Amst) | 2014 Sep 1 |
| Differences in incomes of physicians in the United States by race and sex: observational study. | Ly DP, Seabury SA, Jena AB | BMJ (Clinical research ed.) | 27268490 | BMJ | 2016 Jun 7 |
| Association of residency work hour reform with long term quality and costs of care of US physicians: observational study. | Jena AB, Farid M, Blumenthal D, Bhattacharya J | BMJ (Clinical research ed.) | 31292124 | BMJ | 2019 Jul 10 |
| Golf habits among physicians and surgeons: observational cohort study. | Koplewitz G, Blumenthal DM, Gross N, Hicks T, Jena AB | BMJ (Clinical research ed.) | 30530803 | BMJ | 2018 Dec 10 |
| Divorce among physicians and other healthcare professionals in the United States: analysis of census survey data. | Ly DP, Seabury SA, Jena AB | BMJ (Clinical research ed.) | 25694110 | BMJ | 2015 Feb 18 |
| Acute Myocardial Infarction Mortality During Dates of National Interventional Cardiology Meetings. | Jena AB, Olenski A, Blumenthal DM, Yeh RW, Goldman DP, Romley J | Journal of the American Heart Association | 29523525 | J Am Heart Assoc | 2018 Mar 9 |
| Association Between Playing American Football in the National Football League and Long-term Mortality. | Venkataramani AS, Gandhavadi M, Jena AB | JAMA | 29392304 | JAMA | 2018 Feb 27 |
| Access, quality, and costs of care at physician owned hospitals in the United States: observational study. | Blumenthal DM, Orav EJ, Jena AB, Dudzinski DM, Le ST, Jha AK | BMJ (Clinical research ed.) | 26333819 | BMJ | 2015 Sep 2 |
| A Health Plan's Formulary Led To Reduced Use Of Extended-Release Opioids But Did Not Lower Overall Opioid Use. | Barnett ML, Olenski AR, Thygeson NM, Ishisaka D, Wong S, Jena AB, Mehrotra A | Health affairs (Project Hope) | 30179550 | Health Aff (Millwood) | 2018 Sep |
| Prescription Patterns of Family Members After Discontinued Opioid or Benzodiazepine Therapy of Users. | Barnett ML, Hicks TR, Jena AB | JAMA internal medicine | 31260053 | JAMA Intern Med | 2019 Sep 1 |
| The need for speed: observational study of physician driving behaviors. | Zimerman A, Worsham C, Woo J, Jena AB | BMJ (Clinical research ed.) | 31852682 | BMJ | 2019 Dec 18 |
| Patient mortality after surgery on the surgeon's birthday: observational study. | Kato H, Jena AB, Tsugawa Y | BMJ (Clinical research ed.) | 34913872 | BMJ | 2020 Dec 10 |
| Medical professional liability risk among US cardiologists. | Mangalmurti S, Seabury SA, Chandra A, Lakdawalla D, Oetgen WJ, Jena AB | American heart journal | 24766979 | Am Heart J | 2014 May |
| The declining demand for hospital care as a rationale for duty hour reform. | Jena AB, DePasse JW, Prasad V | Journal of general internal medicine | 24866469 | J Gen Intern Med | 2014 Oct |
| Does the declining lethality of gunshot injuries mask a rising epidemic of gun violence in the United States? | Jena AB, Sun EC, Prasad V | Journal of general internal medicine | 24452421 | J Gen Intern Med | 2014 Jul |
| Association between use of warfarin with common sulfonylureas and serious hypoglycemic events: retrospective cohort analysis. | Romley JA, Gong C, Jena AB, Goldman DP, Williams B, Peters A | BMJ (Clinical research ed.) | 26643108 | BMJ | 2015 Dec 7 |
| Physician spending and subsequent risk of malpractice claims: observational study. | Jena AB, Schoemaker L, Bhattacharya J, Seabury SA | BMJ (Clinical research ed.) | 26538498 | BMJ | 2015 Nov 4 |
| Mandatory use of prescription drug monitoring programs. | Haffajee RL, Jena AB, Weiner SG | JAMA | 25622279 | JAMA | 2015 Mar 3 |
| Behavioral Heuristics in Coronary-Artery Bypass Graft Surgery. | Olenski AR, Zimerman A, Coussens S, Jena AB | The New England journal of medicine | 32074429 | N Engl J Med | 2020 Feb 20 |
| College affirmative action bans and smoking and alcohol use among underrepresented minority adolescents in the United States: A difference-in-differences study. | Venkataramani AS, Cook E, O'Brien RL, Kawachi I, Jena AB, Tsai AC | PLoS medicine | 31211777 | PLoS Med | 2019 Jun |
| Attention Deficit-Hyperactivity Disorder and Month of School Enrollment. | Layton TJ, Barnett ML, Hicks TR, Jena AB | The New England journal of medicine | 30485780 | N Engl J Med | 2018 Nov 29 |
| Authorship Inflation in Medical Publications. | Tilak G, Prasad V, Jena AB | Inquiry : a journal of medical care organization, provision and financing | 26228035 | Inquiry | 2015 |
| Does Pain Lead to Tachycardia? Revisiting the Association Between Self-reported Pain and Heart Rate in a National Sample of Urgent Emergency Department Visits. | Dayoub EJ, Jena AB | Mayo Clinic proceedings | 26250732 | Mayo Clin Proc | 2015 Aug |
| Utilization of Telemedicine Among Rural Medicare Beneficiaries. | Mehrotra A, Jena AB, Busch AB, Souza J, Uscher-Pines L, Landon BE | JAMA | 27163991 | JAMA | 2016 May 10 |
| Adverse inpatient outcomes during the transition to a new electronic health record system: observational study. | Barnett ML, Mehrotra A, Jena AB | BMJ (Clinical research ed.) | 27471242 | BMJ | 2016 Jul 28 |
| Sex Differences in Physician Salary in US Public Medical Schools. | Jena AB, Olenski AR, Blumenthal DM | JAMA internal medicine | 27400435 | JAMA Intern Med | 2016 Sep 1 |
| Opioid-Prescribing Patterns of Emergency Physicians and Risk of Long-Term Use. | Barnett ML, Olenski AR, Jena AB | The New England journal of medicine | 28199807 | N Engl J Med | 2017 Feb 16 |
| The association between physician turnover (the "July Effect") and survival after in-hospital cardiac arrest. | Myers L, Mikhael B, Currier P, Berg K, Jena A, Donnino M, Andersen LW, American Heart Association’s Get with the Guidelines-Resuscitation Investigators | Resuscitation | 28285032 | Resuscitation | 2017 May |
| Variation in Physician Spending and Association With Patient Outcomes. | Tsugawa Y, Jha AK, Newhouse JP, Zaslavsky AM, Jena AB | JAMA internal medicine | 28288254 | JAMA Intern Med | 2017 May 1 |
| Identifying outlier patterns of inconsistent ambulance billing in Medicare. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Health services research | 33492665 | Health Serv Res | 2021 Apr |
| The fail-safe mechanism of post-transcriptional silencing of unspliced HAC1 mRNA. | Di Santo R, Aboulhouda S, Weinberg DE | eLife | 27692069 | Elife | 2016 Oct 1 |
| Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation. | Weinberg DE, Shah P, Eichhorn SW, Hussmann JA, Plotkin JB, Bartel DP | Cell reports | 26876183 | Cell Rep | 2016 Feb 23 |
| CAT-tailing as a fail-safe mechanism for efficient degradation of stalled nascent polypeptides. | Kostova KK, Hickey KL, Osuna BA, Hussmann JA, Frost A, Weinberg DE, Weissman JS | Science (New York, N.Y.) | 28751611 | Science | 2017 Jul 28 |
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| Making recording and analysis of chief complaint a priority for global emergency care research in low-income countries. | Mowafi H, Dworkis D, Bisanzo M, Hansoti B, Seidenberg P, Obermeyer Z, Hauswald M, Reynolds TA | Academic emergency medicine : official journal of the Society for Academic Emergency Medicine | 24283813 | Acad Emerg Med | 2013 Dec |
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| Emergency care in 59 low- and middle-income countries: a systematic review. | Obermeyer Z, Abujaber S, Makar M, Stoll S, Kayden SR, Wallis LA, Reynolds TA, Acute Care Development Consortium | Bulletin of the World Health Organization | 26478615 | Bull World Health Organ | 2015 Aug 1 |
| Individual differences in normal body temperature: longitudinal big data analysis of patient records. | Obermeyer Z, Samra JK, Mullainathan S | BMJ (Clinical research ed.) | 29237616 | BMJ | 2017 Dec 13 |
| Acute myocardial infarction hospital admissions and deaths in England: a national follow-back and follow-forward record-linkage study. | Asaria P, Elliott P, Douglass M, Obermeyer Z, Soljak M, Majeed A, Ezzati M | The Lancet. Public health | 29253451 | Lancet Public Health | 2017 Apr |
| Estimating 1-Year Mortality for High-Risk Primary Care Patients Using the "Surprise" Question. | Lakin JR, Robinson MG, Bernacki RE, Powers BW, Block SD, Cunningham R, Obermeyer Z | JAMA internal medicine | 27695853 | JAMA Intern Med | 2016 Dec 1 |
| Does Machine Learning Automate Moral Hazard and Error? | Mullainathan S, Obermeyer Z | The American economic review | 28781376 | Am Econ Rev | 2017 May |
| Cost savings associated with expanded hospice use in Medicare. | Powers BW, Makar M, Jain SH, Cutler DM, Obermeyer Z | Journal of palliative medicine | 25806563 | J Palliat Med | 2015 May |
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| Cause-specific risk of hospital admission related to extreme heat in older adults. | Bobb JF, Obermeyer Z, Wang Y, Dominici F | JAMA | 25536257 | JAMA | 2014 Dec 24-31 |
| Predictive modeling of U.S. health care spending in late life. | Einav L, Finkelstein A, Mullainathan S, Obermeyer Z | Science (New York, N.Y.) | 29954980 | Science | 2018 Jun 29 |
| Short-term Outcomes for Medicare Beneficiaries After Low-acuity Visits to Emergency Departments and Clinics. | Niedzwiecki M, Baicker K, Wilson M, Cutler DM, Obermeyer Z | Medical care | 27078822 | Med Care | 2016 May |
| Prediction Policy Problems. | Kleinberg J, Ludwig J, Mullainathan S, Obermeyer Z | The American economic review | 27199498 | Am Econ Rev | 2015 May |
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| Early death after emergency department discharge in patients with psychiatric illness. | Chang BP, Pany MJ, Obermeyer Z | The American journal of emergency medicine | 27884584 | Am J Emerg Med | 2017 May |
| The Emergency Care of Patients With Cancer: Setting the Research Agenda. | Brown J, Grudzen C, Kyriacou DN, Obermeyer Z, Quest T, Rivera D, Stone S, Wright J, Shelburne N | Annals of emergency medicine | 26921969 | Ann Emerg Med | 2016 Dec |
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| Astrocyte-produced leukemia inhibitory factor expands the neural stem/progenitor pool following perinatal hypoxia-ischemia. | Felling RJ, Covey MV, Wolujewicz P, Batish M, Levison SW | Journal of neuroscience research | 27661001 | J Neurosci Res | 2016 Dec |
| The long noncoding RNA SPRIGHTLY acts as an intranuclear organizing hub for pre-mRNA molecules. | Lee B, Sahoo A, Marchica J, Holzhauser E, Chen X, Li JL, Seki T, Govindarajan SS, Markey FB, Batish M, Lokhande SJ, Zhang S, Ray A, Perera RJ | Science advances | 28508063 | Sci Adv | 2017 May |
| Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression. | Zhang Y, Pitchiaya S, Cieślik M, Niknafs YS, Tien JC, Hosono Y, Iyer MK, Yazdani S, Subramaniam S, Shukla SK, Jiang X, Wang L, Liu TY, Uhl M, Gawronski AR, Qiao Y, Xiao L, Dhanasekaran SM, Juckette KM, Kunju LP, Cao X, Patel U, Batish M, Shukla GC, Paulsen MT, Ljungman M, Jiang H, Mehra R, Backofen R, Sahinalp CS, Freier SM, Watt AT, Guo S, Wei JT, Feng FY, Malik R, Chinnaiyan AM | Nature genetics | 29808028 | Nat Genet | 2018 Jun |
| Profiling stem cell states in three-dimensional biomaterial niches using high content image informatics. | Dhaliwal A, Brenner M, Wolujewicz P, Zhang Z, Mao Y, Batish M, Kohn J, Moghe PV | Acta biomaterialia | 27590870 | Acta Biomater | 2016 Nov |
| Sex Determination by Two Y-Linked Genes in Garden Asparagus. | Harkess A, Huang K, van der Hulst R, Tissen B, Caplan JL, Koppula A, Batish M, Meyers BC, Leebens-Mack J | The Plant cell | 32220850 | Plant Cell | 2020 Jun |
| Alterations in the mir-15a/16-1 Loci Impairs Its Processing and Augments B-1 Expansion in De Novo Mouse Model of Chronic Lymphocytic Leukemia (CLL). | Kasar S, Underbayev C, Hassan M, Ilev I, Degheidy H, Bauer S, Marti G, Lutz C, Raveche E, Batish M | PloS one | 26959643 | PLoS One | 2016 |
| Therapeutic implications of activation of the host gene (Dleu2) promoter for miR-15a/16-1 in chronic lymphocytic leukemia. | Kasar S, Underbayev C, Yuan Y, Hanlon M, Aly S, Khan H, Chang V, Batish M, Gavrilova T, Badiane F, Degheidy H, Marti G, Raveche E | Oncogene | 23995789 | Oncogene | 2014 Jun 19 |
| Role of mir-15a/16-1 in early B cell development in a mouse model of chronic lymphocytic leukemia. | Underbayev C, Kasar S, Ruezinsky W, Degheidy H, Schneider JS, Marti G, Bauer SR, Fraidenraich D, Lightfoote MM, Parashar V, Raveche E, Batish M | Oncotarget | 27533467 | Oncotarget | 2016 Sep 20 |
| Intragenic antagonistic roles of protein and circRNA in tumorigenesis. | Guarnerio J, Zhang Y, Cheloni G, Panella R, Mae Katon J, Simpson M, Matsumoto A, Papa A, Loretelli C, Petri A, Kauppinen S, Garbutt C, Nielsen GP, Deshpande V, Castillo-Martin M, Cordon-Cardo C, Dimitrios S, Clohessy JG, Batish M, Pandolfi PP | Cell research | 31209250 | Cell Res | 2019 Aug |
| Mechanistic Target of Rapamycin Regulates the Oligodendrocyte Cytoskeleton during Myelination. | Musah AS, Brown TL, Jeffries MA, Shang Q, Hashimoto H, Evangelou AV, Kowalski A, Batish M, Macklin WB, Wood TL | The Journal of neuroscience : the official journal of the Society for Neuroscience | 32139584 | J Neurosci | 2020 Apr 8 |
| Fluorescence In Situ Imaging of Dendritic RNAs at Single-Molecule Resolution. | Batish M, Tyagi S | Current protocols in neuroscience | 31532916 | Curr Protoc Neurosci | 2019 Sep |
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| Restricted Clonality and Limited Germinal Center Reentry Characterize Memory B Cell Reactivation by Boosting. | Mesin L, Schiepers A, Ersching J, Barbulescu A, Cavazzoni CB, Angelini A, Okada T, Kurosaki T, Victora GD | Cell | 31866068 | Cell | 2020 Jan 9 |
| Monitoring T cell-dendritic cell interactions in vivo by intercellular enzymatic labelling. | Pasqual G, Chudnovskiy A, Tas JMJ, Agudelo M, Schweitzer LD, Cui A, Hacohen N, Victora GD | Nature | 29342141 | Nature | 2018 Jan 25 |
| Ubiquitin-mediated fluctuations in MHC class II facilitate efficient germinal center B cell responses. | Bannard O, McGowan SJ, Ersching J, Ishido S, Victora GD, Shin JS, Cyster JG | The Journal of experimental medicine | 27162138 | J Exp Med | 2016 May 30 |
| What Are the Primary Limitations in B-Cell Affinity Maturation, and How Much Affinity Maturation Can We Drive with Vaccination? Lessons from the Antibody Response to HIV-1. | Victora GD, Mouquet H | Cold Spring Harbor perspectives in biology | 28630079 | Cold Spring Harb Perspect Biol | 2018 May 1 |
| Germinal Center Selection and Affinity Maturation Require Dynamic Regulation of mTORC1 Kinase. | Ersching J, Efeyan A, Mesin L, Jacobsen JT, Pasqual G, Grabiner BC, Dominguez-Sola D, Sabatini DM, Victora GD | Immunity | 28636954 | Immunity | 2017 Jun 20 |
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| Monitoring the Interaction Between Dendritic Cells and T Cells In Vivo with LIPSTIC. | Pasqual G, Chudnovskiy A, Victora GD | Methods in molecular biology (Clifton, N.J.) | 36905509 | Methods Mol Biol | 2023 |
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| The transcription factor Foxp1 is a critical negative regulator of the differentiation of follicular helper T cells. | Wang H, Geng J, Wen X, Bi E, Kossenkov AV, Wolf AI, Tas J, Choi YS, Takata H, Day TJ, Chang LY, Sprout SL, Becker EK, Willen J, Tian L, Wang X, Xiao C, Jiang P, Crotty S, Victora GD, Showe LC, Tucker HO, Erikson J, Hu H | Nature immunology | 24859450 | Nat Immunol | 2014 Jul |
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| Identification and selective expansion of functionally superior T cells expressing chimeric antigen receptors. | Chang ZL, Silver PA, Chen YY | Journal of translational medicine | 25990251 | J Transl Med | 2015 May 20 |
| Mammalian synthetic biology in the age of genome editing and personalized medicine. | Ho P, Chen YY | Current opinion in chemical biology | 28628856 | Curr Opin Chem Biol | 2017 Oct |
| Rewiring T-cell responses to soluble factors with chimeric antigen receptors. | Chang ZL, Lorenzini MH, Chen X, Tran U, Bangayan NJ, Chen YY | Nature chemical biology | 29377003 | Nat Chem Biol | 2018 Mar |
| T Cells Expressing CD19/CD20 Bispecific Chimeric Antigen Receptors Prevent Antigen Escape by Malignant B Cells. | Zah E, Lin MY, Silva-Benedict A, Jensen MC, Chen YY | Cancer immunology research | 27059623 | Cancer Immunol Res | 2016 Jun |
| Engineering primary T cells with chimeric antigen receptors for rewired responses to soluble ligands. | Chang ZL, Hou AJ, Chen YY | Nature protocols | 32103205 | Nat Protoc | 2020 Apr |
| TGF-β-responsive CAR-T cells promote anti-tumor immune function. | Hou AJ, Chang ZL, Lorenzini MH, Zah E, Chen YY | Bioengineering & translational medicine | 30065964 | Bioeng Transl Med | 2018 May |
| Quantitative Analyses of Core Promoters Enable Precise Engineering of Regulated Gene Expression in Mammalian Cells. | Ede C, Chen X, Lin MY, Chen YY | ACS synthetic biology | 26883397 | ACS Synth Biol | 2016 May 20 |
| CARs: Synthetic Immunoreceptors for Cancer Therapy and Beyond. | Chang ZL, Chen YY | Trends in molecular medicine | 28416139 | Trends Mol Med | 2017 May |
| Outsmarting and outmuscling cancer cells with synthetic and systems immunology. | Chen LC, Chen YY | Current opinion in biotechnology | 30822698 | Curr Opin Biotechnol | 2019 Dec |
| Modularly Constructed Synthetic Granzyme B Molecule Enables Interrogation of Intracellular Proteases for Targeted Cytotoxicity. | Ho P, Ede C, Chen YY | ACS synthetic biology | 28510446 | ACS Synth Biol | 2017 Aug 18 |
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| Validation of in vivo 2D displacements from spiral cine DENSE at 3T. | Wehner GJ, Suever JD, Haggerty CM, Jing L, Powell DK, Hamlet SM, Grabau JD, Mojsejenko WD, Zhong X, Epstein FH, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 25634468 | J Cardiovasc Magn Reson | 2015 Jan 30 |
| An interactive videogame designed to improve respiratory navigator efficiency in children undergoing cardiovascular magnetic resonance. | Hamlet SM, Haggerty CM, Suever JD, Wehner GJ, Grabau JD, Andres KN, Vandsburger MH, Powell DK, Sorrell VL, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 27599620 | J Cardiovasc Magn Reson | 2016 Sep 6 |
| Reproducibility of cine displacement encoding with stimulated echoes (DENSE) cardiovascular magnetic resonance for measuring left ventricular strains, torsion, and synchrony in mice. | Haggerty CM, Kramer SP, Binkley CM, Powell DK, Mattingly AC, Charnigo R, Epstein FH, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 23981339 | J Cardiovasc Magn Reson | 2013 Aug 27 |
| Association between left ventricular mechanics and diffuse myocardial fibrosis in patients with repaired Tetralogy of Fallot: a cross-sectional study. | Haggerty CM, Suever JD, Pulenthiran A, Mejia-Spiegeler A, Wehner GJ, Jing L, Charnigo RJ, Fornwalt BK, Fogel MA | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 29228952 | J Cardiovasc Magn Reson | 2017 Dec 11 |
| Predicting Survival From Large Echocardiography and Electronic Health Record Datasets: Optimization With Machine Learning. | Samad MD, Ulloa A, Wehner GJ, Jing L, Hartzel D, Good CW, Williams BA, Haggerty CM, Fornwalt BK | JACC. Cardiovascular imaging | 29909114 | JACC Cardiovasc Imaging | 2019 Apr |
| Quantification of left ventricular volumes, mass, and ejection fraction using cine displacement encoding with stimulated echoes (DENSE) MRI. | Haggerty CM, Kramer SP, Skrinjar O, Binkley CM, Powell DK, Mattingly AC, Epstein FH, Fornwalt BK | Journal of magnetic resonance imaging : JMRI | 24923710 | J Magn Reson Imaging | 2014 Aug |
| Patients with repaired tetralogy of Fallot suffer from intra- and inter-ventricular cardiac dyssynchrony: a cardiac magnetic resonance study. | Jing L, Haggerty CM, Suever JD, Alhadad S, Prakash A, Cecchin F, Skrinjar O, Geva T, Powell AJ, Fornwalt BK | European heart journal. Cardiovascular Imaging | 24996664 | Eur Heart J Cardiovasc Imaging | 2014 Dec |
| Gadolinium free cardiovascular magnetic resonance with 2-point Cine balanced steady state free precession. | Stromp TA, Leung SW, Andres KN, Jing L, Fornwalt BK, Charnigo RJ, Sorrell VL, Vandsburger MH | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 26520782 | J Cardiovasc Magn Reson | 2015 Oct 29 |
| Predicting deterioration of ventricular function in patients with repaired tetralogy of Fallot using machine learning. | Samad MD, Wehner GJ, Arbabshirani MR, Jing L, Powell AJ, Geva T, Haggerty CM, Fornwalt BK | European heart journal. Cardiovascular Imaging | 29538684 | Eur Heart J Cardiovasc Imaging | 2018 Jul 1 |
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| Optimal configuration of respiratory navigator gating for the quantification of left ventricular strain using spiral cine displacement encoding with stimulated echoes (DENSE) MRI. | Hamlet SM, Haggerty CM, Suever JD, Wehner GJ, Andres KN, Powell DK, Zhong X, Fornwalt BK | Journal of magnetic resonance imaging : JMRI | 27458823 | J Magn Reson Imaging | 2017 Mar |
| Comparison of left ventricular strains and torsion derived from feature tracking and DENSE CMR. | Wehner GJ, Jing L, Haggerty CM, Suever JD, Chen J, Hamlet SM, Feindt JA, Dimitri Mojsejenko W, Fogel MA, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 30208894 | J Cardiovasc Magn Reson | 2018 Sep 13 |
| Obesity reduces left ventricular strains, torsion, and synchrony in mouse models: a cine displacement encoding with stimulated echoes (DENSE) cardiovascular magnetic resonance study. | Kramer SP, Powell DK, Haggerty CM, Binkley CM, Mattingly AC, Cassis LA, Epstein FH, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 24380567 | J Cardiovasc Magn Reson | 2013 Dec 31 |
| Right Ventricular Strain, Torsion, and Dyssynchrony in Healthy Subjects Using 3D Spiral Cine DENSE Magnetic Resonance Imaging. | Suever JD, Wehner GJ, Jing L, Powell DK, Hamlet SM, Grabau JD, Mojsejenko D, Andres KN, Haggerty CM, Fornwalt BK | IEEE transactions on medical imaging | 28055859 | IEEE Trans Med Imaging | 2017 May |
| Using a respiratory navigator significantly reduces variability when quantifying left ventricular torsion with cardiovascular magnetic resonance. | Hamlet SM, Haggerty CM, Suever JD, Wehner GJ, Andres KN, Powell DK, Charnigo RJ, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 28245864 | J Cardiovasc Magn Reson | 2017 Mar 1 |
| Left and right ventricular dyssynchrony and strains from cardiovascular magnetic resonance feature tracking do not predict deterioration of ventricular function in patients with repaired tetralogy of Fallot. | Jing L, Wehner GJ, Suever JD, Charnigo RJ, Alhadad S, Stearns E, Mojsejenko D, Haggerty CM, Hickey K, Valente AM, Geva T, Powell AJ, Fornwalt BK | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 27549809 | J Cardiovasc Magn Reson | 2016 Aug 22 |
| Typical readout durations in spiral cine DENSE yield blurred images and underestimate cardiac strains at both 3.0 T and 1.5 T. | Wehner GJ, Suever JD, Fielden SW, Powell DK, Hamlet SM, Vandsburger MH, Haggerty CM, Zhong X, Fornwalt BK | Magnetic resonance imaging | 30099059 | Magn Reson Imaging | 2018 Dec |
| Electronic health record phenotype in subjects with genetic variants associated with arrhythmogenic right ventricular cardiomyopathy: a study of 30,716 subjects with exome sequencing. | Haggerty CM, James CA, Calkins H, Tichnell C, Leader JB, Hartzel DN, Nevius CD, Pendergrass SA, Person TN, Schwartz M, Ritchie MD, Carey DJ, Ledbetter DH, Williams MS, Dewey FE, Lopez A, Penn J, Overton JD, Reid JG, Lebo M, Mason-Suares H, Austin-Tse C, Rehm HL, Delisle BP, Makowski DJ, Mehra VC, Murray MF, Fornwalt BK | Genetics in medicine : official journal of the American College of Medical Genetics | 28471438 | Genet Med | 2017 Nov |
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| Impact of the cone operation on left ventricular size, function, and dyssynchrony in Ebstein anomaly: a cardiovascular magnetic resonance study. | Beroukhim RS, Jing L, Harrild DM, Fornwalt BK, Mejia-Spiegeler A, Rhodes J, Emani S, Powell AJ | Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance | 29783986 | J Cardiovasc Magn Reson | 2018 May 21 |
| Routinely reported ejection fraction and mortality in clinical practice: where does the nadir of risk lie? | Wehner GJ, Jing L, Haggerty CM, Suever JD, Leader JB, Hartzel DN, Kirchner HL, Manus JNA, James N, Ayar Z, Gladding P, Good CW, Cleland JGF, Fornwalt BK | European heart journal | 31386109 | Eur Heart J | 2020 Mar 21 |
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| ATG8 Is Essential Specifically for an Autophagy-Independent Function in Apicoplast Biogenesis in Blood-Stage Malaria Parasites. | Walczak M, Ganesan SM, Niles JC, Yeh E | mBio | 29295911 | mBio | 2018 Jan 2 |
| The Prenylated Proteome of Plasmodium falciparum Reveals Pathogen-specific Prenylation Activity and Drug Mechanism-of-action. | Gisselberg JE, Zhang L, Elias JE, Yeh E | Molecular & cellular proteomics : MCP | 28040698 | Mol Cell Proteomics | 2017 Apr |
| Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites. | Boucher MJ, Ghosh S, Zhang L, Lal A, Jang SW, Ju A, Zhang S, Wang X, Ralph SA, Zou J, Elias JE, Yeh E | PLoS biology | 30212465 | PLoS Biol | 2018 Sep |
| Specific Inhibition of the Bifunctional Farnesyl/Geranylgeranyl Diphosphate Synthase in Malaria Parasites via a New Small-Molecule Binding Site. | Gisselberg JE, Herrera Z, Orchard LM, Llinás M, Yeh E | Cell chemical biology | 29276048 | Cell Chem Biol | 2018 Feb 15 |
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| Disruption of Apicoplast Biogenesis by Chemical Stabilization of an Imported Protein Evades the Delayed-Death Phenotype in Malaria Parasites. | Boucher MJ, Yeh E | mSphere | 30674649 | mSphere | 2019 Jan 23 |
| The Toxoplasma gondii Active Serine Hydrolase 4 Regulates Parasite Division and Intravacuolar Parasite Architecture. | Foe IT, Onguka O, Amberg-Johnson K, Garner RM, Amara N, Beatty W, Yeh E, Bogyo M | mSphere | 30232166 | mSphere | 2018 Sep 19 |
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| Maintaining intestinal health: the genetics and immunology of very early onset inflammatory bowel disease. | Kelsen JR, Baldassano RN, Artis D, Sonnenberg GF | Cellular and molecular gastroenterology and hepatology | 26393237 | Cell Mol Gastroenterol Hepatol | 2015 Sep 1 |
| Group 2 innate lymphoid cells promote beiging of white adipose tissue and limit obesity. | Brestoff JR, Kim BS, Saenz SA, Stine RR, Monticelli LA, Sonnenberg GF, Thome JJ, Farber DL, Lutfy K, Seale P, Artis D | Nature | 25533952 | Nature | 2015 Mar 12 |
| Immune tolerance. Group 3 innate lymphoid cells mediate intestinal selection of commensal bacteria-specific CD4⁺ T cells. | Hepworth MR, Fung TC, Masur SH, Kelsen JR, McConnell FM, Dubrot J, Withers DR, Hugues S, Farrar MA, Reith W, Eberl G, Baldassano RN, Laufer TM, Elson CO, Sonnenberg GF | Science (New York, N.Y.) | 25908663 | Science | 2015 May 29 |
| Metabolic regulation of innate and adaptive lymphocyte effector responses. | Joseph AM, Monticelli LA, Sonnenberg GF | Immunological reviews | 30294971 | Immunol Rev | 2018 Nov |
| Essential immunologic orchestrators of intestinal homeostasis. | Zhou L, Sonnenberg GF | Science immunology | 29440266 | Sci Immunol | 2018 Feb 9 |
| Lymphoid-Tissue-Resident Commensal Bacteria Promote Members of the IL-10 Cytokine Family to Establish Mutualism. | Fung TC, Bessman NJ, Hepworth MR, Kumar N, Shibata N, Kobuley D, Wang K, Ziegler CGK, Goc J, Shima T, Umesaki Y, Sartor RB, Sullivan KV, Lawley TD, Kunisawa J, Kiyono H, Sonnenberg GF | Immunity | 26982365 | Immunity | 2016 Mar 15 |
| Regulation of the adaptive immune system by innate lymphoid cells. | Hepworth MR, Sonnenberg GF | Current opinion in immunology | 24594491 | Curr Opin Immunol | 2014 Apr |
| Regulation of intestinal health and disease by innate lymphoid cells. | Sonnenberg GF | International immunology | 24821261 | Int Immunol | 2014 Sep |
| Anti-microbial Functions of Group 3 Innate Lymphoid Cells in Gut-Associated Lymphoid Tissues Are Regulated by G-Protein-Coupled Receptor 183. | Chu C, Moriyama S, Li Z, Zhou L, Flamar AL, Klose CSN, Moeller JB, Putzel GG, Withers DR, Sonnenberg GF, Artis D | Cell reports | 29949760 | Cell Rep | 2018 Jun 26 |
| CCR7-dependent trafficking of RORγ⁺ ILCs creates a unique microenvironment within mucosal draining lymph nodes. | Mackley EC, Houston S, Marriott CL, Halford EE, Lucas B, Cerovic V, Filbey KJ, Maizels RM, Hepworth MR, Sonnenberg GF, Milling S, Withers DR | Nature communications | 25575242 | Nat Commun | 2015 Jan 9 |
| Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis. | Alenghat T, Osborne LC, Saenz SA, Kobuley D, Ziegler CG, Mullican SE, Choi I, Grunberg S, Sinha R, Wynosky-Dolfi M, Snyder A, Giacomin PR, Joyce KL, Hoang TB, Bewtra M, Brodsky IE, Sonnenberg GF, Bushman FD, Won KJ, Lazar MA, Artis D | Nature | 24185009 | Nature | 2013 Dec 5 |
| Innate lymphoid cells regulate CD4+ T-cell responses to intestinal commensal bacteria. | Hepworth MR, Monticelli LA, Fung TC, Ziegler CG, Grunberg S, Sinha R, Mantegazza AR, Ma HL, Crawford A, Angelosanto JM, Wherry EJ, Koni PA, Bushman FD, Elson CO, Eberl G, Artis D, Sonnenberg GF | Nature | 23698371 | Nature | 2013 Jun 6 |
| T cell factor 1 is required for group 2 innate lymphoid cell generation. | Yang Q, Monticelli LA, Saenz SA, Chi AW, Sonnenberg GF, Tang J, De Obaldia ME, Bailis W, Bryson JL, Toscano K, Huang J, Haczku A, Pear WS, Artis D, Bhandoola A | Immunity | 23601684 | Immunity | 2013 Apr 18 |
| TSLP elicits IL-33-independent innate lymphoid cell responses to promote skin inflammation. | Kim BS, Siracusa MC, Saenz SA, Noti M, Monticelli LA, Sonnenberg GF, Hepworth MR, Van Voorhees AS, Comeau MR, Artis D | Science translational medicine | 23363980 | Sci Transl Med | 2013 Jan 30 |
| Transient inhibition of ROR-γt therapeutically limits intestinal inflammation by reducing TH17 cells and preserving group 3 innate lymphoid cells. | Withers DR, Hepworth MR, Wang X, Mackley EC, Halford EE, Dutton EE, Marriott CL, Brucklacher-Waldert V, Veldhoen M, Kelsen J, Baldassano RN, Sonnenberg GF | Nature medicine | 26878233 | Nat Med | 2016 Mar |
| Innate lymphoid cells support regulatory T cells in the intestine through interleukin-2. | Zhou L, Chu C, Teng F, Bessman NJ, Goc J, Santosa EK, Putzel GG, Kabata H, Kelsen JR, Baldassano RN, Shah MA, Sockolow RE, Vivier E, Eberl G, Smith KA, Sonnenberg GF | Nature | 30944470 | Nature | 2019 Apr |
| Host-Microbiota Interactions Shape Local and Systemic Inflammatory Diseases. | Grigg JB, Sonnenberg GF | Journal of immunology (Baltimore, Md. : 1950) | 28069751 | J Immunol | 2017 Jan 15 |
| Resistin-like molecule α promotes pathogenic Th17 cell responses and bacterial-induced intestinal inflammation. | Osborne LC, Joyce KL, Alenghat T, Sonnenberg GF, Giacomin PR, Du Y, Bergstrom KS, Vallance BA, Nair MG | Journal of immunology (Baltimore, Md. : 1950) | 23355735 | J Immunol | 2013 Mar 1 |
| Innate lymphoid cell interactions with microbiota: implications for intestinal health and disease. | Sonnenberg GF, Artis D | Immunity | 23084357 | Immunity | 2012 Oct 19 |
| Emerging roles for antigen presentation in establishing host-microbiome symbiosis. | Bessman NJ, Sonnenberg GF | Immunological reviews | 27319348 | Immunol Rev | 2016 Jul |
| Anatomical localization of commensal bacteria in immune cell homeostasis and disease. | Fung TC, Artis D, Sonnenberg GF | Immunological reviews | 24942680 | Immunol Rev | 2014 Jul |
| Editorial: New tricks for innate lymphoid cells. | Sonnenberg GF | Journal of leukocyte biology | 24179147 | J Leukoc Biol | 2013 Nov |
| Group 3 innate lymphoid cells: regulating host-commensal bacteria interactions in inflammation and cancer. | Goc J, Hepworth MR, Sonnenberg GF | International immunology | 26451009 | Int Immunol | 2016 Jan |
| Regulation of inflammation by microbiota interactions with the host. | Blander JM, Longman RS, Iliev ID, Sonnenberg GF, Artis D | Nature immunology | 28722709 | Nat Immunol | 2017 Jul 19 |
| Innate lymphoid cells in the initiation, regulation and resolution of inflammation. | Sonnenberg GF, Artis D | Nature medicine | 26121198 | Nat Med | 2015 Jul |
| Epithelial-intrinsic IKKα expression regulates group 3 innate lymphoid cell responses and antibacterial immunity. | Giacomin PR, Moy RH, Noti M, Osborne LC, Siracusa MC, Alenghat T, Liu B, McCorkell KA, Troy AE, Rak GD, Hu Y, May MJ, Ma HL, Fouser LA, Sonnenberg GF, Artis D | The Journal of experimental medicine | 26371187 | J Exp Med | 2015 Sep 21 |
| Schizophrenia is associated with a pattern of spatial working memory deficits consistent with cortical disinhibition. | Starc M, Murray JD, Santamauro N, Savic A, Diehl C, Cho YT, Srihari V, Morgan PT, Krystal JH, Wang XJ, Repovs G, Anticevic A | Schizophrenia research | 27745755 | Schizophr Res | 2017 Mar |
| Toward understanding thalamocortical dysfunction in schizophrenia through computational models of neural circuit dynamics. | Murray JD, Anticevic A | Schizophrenia research | 27784534 | Schizophr Res | 2017 Feb |
| N-methyl-D-aspartate receptor antagonist effects on prefrontal cortical connectivity better model early than chronic schizophrenia. | Anticevic A, Corlett PR, Cole MW, Savic A, Gancsos M, Tang Y, Repovs G, Murray JD, Driesen NR, Morgan PT, Xu K, Wang F, Krystal JH | Biological psychiatry | 25281999 | Biol Psychiatry | 2015 Mar 15 |
| Linking microcircuit dysfunction to cognitive impairment: effects of disinhibition associated with schizophrenia in a cortical working memory model. | Murray JD, Anticevic A, Gancsos M, Ichinose M, Corlett PR, Krystal JH, Wang XJ | Cerebral cortex (New York, N.Y. : 1991) | 23203979 | Cereb Cortex | 2014 Apr |
| Amygdala connectivity differs among chronic, early course, and individuals at risk for developing schizophrenia. | Anticevic A, Tang Y, Cho YT, Repovs G, Cole MW, Savic A, Wang F, Krystal JH, Xu K | Schizophrenia bulletin | 24366718 | Schizophr Bull | 2014 Sep |
| Global connectivity of prefrontal cortex predicts cognitive control and intelligence. | Cole MW, Yarkoni T, Repovs G, Anticevic A, Braver TS | The Journal of neuroscience : the official journal of the Society for Neuroscience | 22745498 | J Neurosci | 2012 Jun 27 |
| Impaired Tuning of Neural Ensembles and the Pathophysiology of Schizophrenia: A Translational and Computational Neuroscience Perspective. | Krystal JH, Anticevic A, Yang GJ, Dragoi G, Driesen NR, Wang XJ, Murray JD | Biological psychiatry | 28434616 | Biol Psychiatry | 2017 May 15 |
| Understanding the role of thalamic circuits in schizophrenia neuropathology. | Anticevic A | Schizophrenia research | 27939828 | Schizophr Res | 2017 Feb |
| Relationship of resting brain hyperconnectivity and schizophrenia-like symptoms produced by the NMDA receptor antagonist ketamine in humans. | Driesen NR, McCarthy G, Bhagwagar Z, Bloch M, Calhoun V, D'Souza DC, Gueorguieva R, He G, Ramachandran R, Suckow RF, Anticevic A, Morgan PT, Krystal JH | Molecular psychiatry | 23337947 | Mol Psychiatry | 2013 Nov |
| The role of default network deactivation in cognition and disease. | Anticevic A, Cole MW, Murray JD, Corlett PR, Wang XJ, Krystal JH | Trends in cognitive sciences | 23142417 | Trends Cogn Sci | 2012 Dec |
| Early-course unmedicated schizophrenia patients exhibit elevated prefrontal connectivity associated with longitudinal change. | Anticevic A, Hu X, Xiao Y, Hu J, Li F, Bi F, Cole MW, Savic A, Yang GJ, Repovs G, Murray JD, Wang XJ, Huang X, Lui S, Krystal JH, Gong Q | The Journal of neuroscience : the official journal of the Society for Neuroscience | 25568120 | J Neurosci | 2015 Jan 7 |
| Schizophrenia Exhibits Bi-directional Brain-Wide Alterations in Cortico-Striato-Cerebellar Circuits. | Ji JL, Diehl C, Schleifer C, Tamminga CA, Keshavan MS, Sweeney JA, Clementz BA, Hill SK, Pearlson G, Yang G, Creatura G, Krystal JH, Repovs G, Murray J, Winkler A, Anticevic A | Cerebral cortex (New York, N.Y. : 1991) | 31157363 | Cereb Cortex | 2019 Dec 17 |
| Effects of reward on spatial working memory in schizophrenia. | Cho YT, Lam NH, Starc M, Santamauro N, Savic A, Diehl CK, Schleifer CH, Moujaes F, Srihari VH, Repovs G, Murray JD, Anticevic A | Journal of abnormal psychology | 30335439 | J Abnorm Psychol | 2018 Oct |
| Developmentally divergent sexual dimorphism in the cortico-striatal-thalamic-cortical psychosis risk pathway. | Jacobs GR, Ameis SH, Ji JL, Viviano JD, Dickie EW, Wheeler AL, Stojanovski S, Anticevic A, Voineskos AN | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 31060043 | Neuropsychopharmacology | 2019 Aug |
| In vivo evidence for β2 nicotinic acetylcholine receptor subunit upregulation in smokers as compared with nonsmokers with schizophrenia. | Esterlis I, Ranganathan M, Bois F, Pittman B, Picciotto MR, Shearer L, Anticevic A, Carlson J, Niciu MJ, Cosgrove KP, D'Souza DC | Biological psychiatry | 24360979 | Biol Psychiatry | 2014 Sep 15 |
| Association of Thalamic Dysconnectivity and Conversion to Psychosis in Youth and Young Adults at Elevated Clinical Risk. | Anticevic A, Haut K, Murray JD, Repovs G, Yang GJ, Diehl C, McEwen SC, Bearden CE, Addington J, Goodyear B, Cadenhead KS, Mirzakhanian H, Cornblatt BA, Olvet D, Mathalon DH, McGlashan TH, Perkins DO, Belger A, Seidman LJ, Tsuang MT, van Erp TG, Walker EF, Hamann S, Woods SW, Qiu M, Cannon TD | JAMA psychiatry | 26267151 | JAMA Psychiatry | 2015 Sep |
| Effects of Altered Excitation-Inhibition Balance on Decision Making in a Cortical Circuit Model. | Lam NH, Borduqui T, Hallak J, Roque A, Anticevic A, Krystal JH, Wang XJ, Murray JD | The Journal of neuroscience : the official journal of the Society for Neuroscience | 34887320 | J Neurosci | 2022 Feb 9 |
| Electrophysiological Studies of Reception of Facial Communication in Autism Spectrum Disorder and Schizophrenia. | Levy EJ, Foss-Feig J, Isenstein EL, Srihari V, Anticevic A, Naples AJ, McPartland JC | Review journal of autism and developmental disorders | 36568688 | Rev J Autism Dev Disord | 2022 Dec |
| Ketamine induces multiple individually distinct whole-brain functional connectivity signatures. | Moujaes F, Ji JL, Rahmati M, Burt JB, Schleifer C, Adkinson BD, Savic A, Santamauro N, Tamayo Z, Diehl C, Kolobaric A, Flynn M, Rieser N, Fonteneau C, Camarro T, Xu J, Cho Y, Repovs G, Fineberg SK, Morgan PT, Seifritz E, Vollenweider FX, Krystal JH, Murray JD, Preller KH, Anticevic A | eLife | 38629811 | Elife | 2024 Apr 17 |
| Bridging Levels of Understanding in Schizophrenia Through Computational Modeling. | Anticevic A, Murray JD, Barch DM | Clinical psychological science : a journal of the Association for Psychological Science | 25960938 | Clin Psychol Sci | 2015 May |
| The frontoparietal control system: a central role in mental health. | Cole MW, Repovš G, Anticevic A | The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry | 24622818 | Neuroscientist | 2014 Dec |
| Connectivity, pharmacology, and computation: toward a mechanistic understanding of neural system dysfunction in schizophrenia. | Anticevic A, Cole MW, Repovs G, Savic A, Driesen NR, Yang G, Cho YT, Murray JD, Glahn DC, Wang XJ, Krystal JH | Frontiers in psychiatry | 24399974 | Front Psychiatry | 2013 Dec 24 |
| Changes in global and thalamic brain connectivity in LSD-induced altered states of consciousness are attributable to the 5-HT2A receptor. | Preller KH, Burt JB, Ji JL, Schleifer CH, Adkinson BD, Stämpfli P, Seifritz E, Repovs G, Krystal JH, Murray JD, Vollenweider FX, Anticevic A | eLife | 30355445 | Elife | 2018 Oct 25 |
| Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks. | Purg Suljic N, Kraljic A, Rahmati M, Cho YT, Slana Ozimic A, Murray JD, Anticevic A, Repovs G | bioRxiv : the preprint server for biology | 37662268 | bioRxiv | 2024 Jul 31 |
| Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks. | Purg Suljič N, Kraljič A, Rahmati M, Cho YT, Slana Ozimič A, Murray JD, Anticevic A, Repovš G | Cerebral cortex (New York, N.Y. : 1991) | 39214852 | Cereb Cortex | 2024 Aug 1 |
| The impact of NMDA receptor blockade on human working memory-related prefrontal function and connectivity. | Driesen NR, McCarthy G, Bhagwagar Z, Bloch MH, Calhoun VD, D'Souza DC, Gueorguieva R, He G, Leung HC, Ramani R, Anticevic A, Suckow RF, Morgan PT, Krystal JH | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 23856634 | Neuropsychopharmacology | 2013 Dec |
| Multi-task connectivity reveals flexible hubs for adaptive task control. | Cole MW, Reynolds JR, Power JD, Repovs G, Anticevic A, Braver TS | Nature neuroscience | 23892552 | Nat Neurosci | 2013 Sep |
| Characterizing thalamo-cortical disturbances in schizophrenia and bipolar illness. | Anticevic A, Cole MW, Repovs G, Murray JD, Brumbaugh MS, Winkler AM, Savic A, Krystal JH, Pearlson GD, Glahn DC | Cerebral cortex (New York, N.Y. : 1991) | 23825317 | Cereb Cortex | 2014 Dec |
| Cognition-emotion dysinteraction in schizophrenia. | Anticevic A, Corlett PR | Frontiers in psychology | 23091464 | Front Psychol | 2012 |
| Altered global brain signal in schizophrenia. | Yang GJ, Murray JD, Repovs G, Cole MW, Savic A, Glasser MF, Pittenger C, Krystal JH, Wang XJ, Pearlson GD, Glahn DC, Anticevic A | Proceedings of the National Academy of Sciences of the United States of America | 24799682 | Proc Natl Acad Sci U S A | 2014 May 20 |
| Ventral anterior cingulate connectivity distinguished nonpsychotic bipolar illness from psychotic bipolar disorder and schizophrenia. | Anticevic A, Savic A, Repovs G, Yang G, McKay DR, Sprooten E, Knowles EE, Krystal JH, Pearlson GD, Glahn DC | Schizophrenia bulletin | 24782562 | Schizophr Bull | 2015 Jan |
| Global resting-state functional magnetic resonance imaging analysis identifies frontal cortex, striatal, and cerebellar dysconnectivity in obsessive-compulsive disorder. | Anticevic A, Hu S, Zhang S, Savic A, Billingslea E, Wasylink S, Repovs G, Cole MW, Bednarski S, Krystal JH, Bloch MH, Li CS, Pittenger C | Biological psychiatry | 24314349 | Biol Psychiatry | 2014 Apr 15 |
| Searching for Cross-Diagnostic Convergence: Neural Mechanisms Governing Excitation and Inhibition Balance in Schizophrenia and Autism Spectrum Disorders. | Foss-Feig JH, Adkinson BD, Ji JL, Yang G, Srihari VH, McPartland JC, Krystal JH, Murray JD, Anticevic A | Biological psychiatry | 28434615 | Biol Psychiatry | 2017 May 15 |
| Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. | Schleifer C, Lin A, Kushan L, Ji JL, Yang G, Bearden CE, Anticevic A | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30478034 | J Neurosci | 2019 Feb 13 |
| Mapping the human brain's cortical-subcortical functional network organization. | Ji JL, Spronk M, Kulkarni K, Repovš G, Anticevic A, Cole MW | NeuroImage | 30291974 | Neuroimage | 2019 Jan 15 |
| Rebalancing Altered Computations: Considering the Role of Neural Excitation and Inhibition Balance Across the Psychiatric Spectrum. | Anticevic A, Murray JD | Biological psychiatry | 28434614 | Biol Psychiatry | 2017 May 15 |
| Re-conceptualizing ASD Within a Dimensional Framework: Positive, Negative, and Cognitive Feature Clusters. | Foss-Feig JH, McPartland JC, Anticevic A, Wolf J | Journal of autism and developmental disorders | 26267330 | J Autism Dev Disord | 2016 Jan |
| Amygdala volume is reduced in early course schizophrenia. | Rich AM, Cho YT, Tang Y, Savic A, Krystal JH, Wang F, Xu K, Anticevic A | Psychiatry research. Neuroimaging | 27035063 | Psychiatry Res Neuroimaging | 2016 Apr 30 |
| Robust hierarchically organized whole-brain patterns of dysconnectivity in schizophrenia spectrum disorders observed after personalized intrinsic network topography. | Dickie EW, Shahab S, Hawco C, Miranda D, Herman G, Argyelan M, Ji JL, Jeyachandra J, Anticevic A, Malhotra AK, Voineskos AN | Human brain mapping | 37605827 | Hum Brain Mapp | 2023 Oct 15 |
| Transcriptomics-informed large-scale cortical model captures topography of pharmacological neuroimaging effects of LSD. | Burt JB, Preller KH, Demirtas M, Ji JL, Krystal JH, Vollenweider FX, Anticevic A, Murray JD | eLife | 34313217 | Elife | 2021 Jul 27 |
| Reward and loss incentives improve spatial working memory by shaping trial-by-trial posterior frontoparietal signals. | Cho YT, Moujaes F, Schleifer CH, Starc M, Ji JL, Santamauro N, Adkinson B, Kolobaric A, Flynn M, Krystal JH, Murray JD, Repovs G, Anticevic A | NeuroImage | 35346841 | Neuroimage | 2022 Jul 1 |
| Myofiber-specific TEAD1 overexpression drives satellite cell hyperplasia and counters pathological effects of dystrophin deficiency. | Southard S, Kim JR, Low S, Tsika RW, Lepper C | eLife | 27725085 | Elife | 2016 Oct 11 |
| Role of satellite cells versus myofibers in muscle hypertrophy induced by inhibition of the myostatin/activin signaling pathway. | Lee SJ, Huynh TV, Lee YS, Sebald SM, Wilcox-Adelman SA, Iwamori N, Lepper C, Matzuk MM, Fan CM | Proceedings of the National Academy of Sciences of the United States of America | 22869749 | Proc Natl Acad Sci U S A | 2012 Aug 28 |
| Myf5-positive satellite cells contribute to Pax7-dependent long-term maintenance of adult muscle stem cells. | Günther S, Kim J, Kostin S, Lepper C, Fan CM, Braun T | Cell stem cell | 23933088 | Cell Stem Cell | 2013 Nov 7 |
| The satellite cell builds its nest under Notch's guidance. | Lepper C, Low S, Partridge TA | Cell stem cell | 23040471 | Cell Stem Cell | 2012 Oct 5 |
| A series of Cre-ER(T2) drivers for manipulation of the skeletal muscle lineage. | Southard S, Low S, Li L, Rozo M, Harvey T, Fan CM, Lepper C | Genesis (New York, N.Y. : 2000) | 24844572 | Genesis | 2014 Aug |
| Distinct and overlapping sarcoma subtypes initiated from muscle stem and progenitor cells. | Blum JM, Añó L, Li Z, Van Mater D, Bennett BD, Sachdeva M, Lagutina I, Zhang M, Mito JK, Dodd LG, Cardona DM, Dodd RD, Williams N, Ma Y, Lepper C, Linardic CM, Mukherjee S, Grosveld GC, Fan CM, Kirsch DG | Cell reports | 24239359 | Cell Rep | 2013 Nov 27 |
| DAF-16 and TCER-1 Facilitate Adaptation to Germline Loss by Restoring Lipid Homeostasis and Repressing Reproductive Physiology in C. elegans. | Amrit FR, Steenkiste EM, Ratnappan R, Chen SW, McClendon TB, Kostka D, Yanowitz J, Olsen CP, Ghazi A | PLoS genetics | 26862916 | PLoS Genet | 2016 Feb |
| 13C- and 15N-Labeling Strategies Combined with Mass Spectrometry Comprehensively Quantify Phospholipid Dynamics in C. elegans. | Dancy BC, Chen SW, Drechsler R, Gafken PR, Olsen CP | PloS one | 26528916 | PLoS One | 2015 |
| Germline signals deploy NHR-49 to modulate fatty-acid β-oxidation and desaturation in somatic tissues of C. elegans. | Ratnappan R, Amrit FR, Chen SW, Gill H, Holden K, Ward J, Yamamoto KR, Olsen CP, Ghazi A | PLoS genetics | 25474470 | PLoS Genet | 2014 Dec |
| Transaldolase inhibition impairs mitochondrial respiration and induces a starvation-like longevity response in Caenorhabditis elegans. | Bennett CF, Kwon JJ, Chen C, Russell J, Acosta K, Burnaevskiy N, Crane MM, Bitto A, Vander Wende H, Simko M, Pineda V, Rossner R, Wasko BM, Choi H, Chen S, Park S, Jafari G, Sands B, Perez Olsen C, Mendenhall AR, Morgan PG, Kaeberlein M | PLoS genetics | 28355222 | PLoS Genet | 2017 Mar |
| HPLC-Based Mass Spectrometry Characterizes the Phospholipid Alterations in Ether-Linked Lipid Deficiency Models Following Oxidative Stress. | Drechsler R, Chen SW, Dancy BC, Mehrabkhani L, Olsen CP | PloS one | 27893806 | PLoS One | 2016 |
| Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. | Biel JT, Thompson MC, Cunningham CN, Corn JE, Fraser JS | Structure (London, England : 1993) | 28416112 | Structure | 2017 May 2 |
| Integrative, dynamic structural biology at atomic resolution--it's about time. | van den Bedem H, Fraser JS | Nature methods | 25825836 | Nat Methods | 2015 Apr |
| Lineage-Specific Viral Hijacking of Non-canonical E3 Ubiquitin Ligase Cofactors in the Evolution of Vif Anti-APOBEC3 Activity. | Kane JR, Stanley DJ, Hultquist JF, Johnson JR, Mietrach N, Binning JM, Jónsson SR, Barelier S, Newton BW, Johnson TL, Franks-Skiba KE, Li M, Brown WL, Gunnarsson HI, Adalbjornsdóttir A, Fraser JS, Harris RS, Andrésdóttir V, Gross JD, Krogan NJ | Cell reports | 25981045 | Cell Rep | 2015 May 26 |
| From systems to structure: bridging networks and mechanism. | Fraser JS, Gross JD, Krogan NJ | Molecular cell | 23352243 | Mol Cell | 2013 Jan 24 |
| Systematic functional prioritization of protein posttranslational modifications. | Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ | Cell | 22817900 | Cell | 2012 Jul 20 |
| Protein structural ensembles are revealed by redefining X-ray electron density noise. | Lang PT, Holton JM, Fraser JS, Alber T | Proceedings of the National Academy of Sciences of the United States of America | 24363322 | Proc Natl Acad Sci U S A | 2014 Jan 7 |
| Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. | Van Benschoten AH, Afonine PV, Terwilliger TC, Wall ME, Jackson CJ, Sauter NK, Adams PD, Urzhumtsev A, Fraser JS | Acta crystallographica. Section D, Biological crystallography | 26249347 | Acta Crystallogr D Biol Crystallogr | 2015 Aug |
| From deep TLS validation to ensembles of atomic models built from elemental motions. | Urzhumtsev A, Afonine PV, Van Benschoten AH, Fraser JS, Adams PD | Acta crystallographica. Section D, Biological crystallography | 26249348 | Acta Crystallogr D Biol Crystallogr | 2015 Aug |
| One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. | Fischer M, Shoichet BK, Fraser JS | Chembiochem : a European journal of chemical biology | 26032594 | Chembiochem | 2015 Jul 27 |
| CheShift-2 resolves a local inconsistency between two X-ray crystal structures. | Vila JA, Sue SC, Fraser JS, Scheraga HA, Dyson HJ | Journal of biomolecular NMR | 22945426 | J Biomol NMR | 2012 Oct |
| Automated identification of functional dynamic contact networks from X-ray crystallography. | van den Bedem H, Bhabha G, Yang K, Wright PE, Fraser JS | Nature methods | 23913260 | Nat Methods | 2013 Sep |
| From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. | Braberg H, Jin H, Moehle EA, Chan YA, Wang S, Shales M, Benschop JJ, Morris JH, Qiu C, Hu F, Tang LK, Fraser JS, Holstege FC, Hieter P, Guthrie C, Kaplan CD, Krogan NJ | Cell | 23932120 | Cell | 2013 Aug 15 |
| Keep on moving: discovering and perturbing the conformational dynamics of enzymes. | Bhabha G, Biel JT, Fraser JS | Accounts of chemical research | 25539415 | Acc Chem Res | 2015 Feb 17 |
| High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. | Thomaston JL, Alfonso-Prieto M, Woldeyes RA, Fraser JS, Klein ML, Fiorin G, DeGrado WF | Proceedings of the National Academy of Sciences of the United States of America | 26578770 | Proc Natl Acad Sci U S A | 2015 Nov 17 |
| Measuring and modeling diffuse scattering in protein X-ray crystallography. | Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME | Proceedings of the National Academy of Sciences of the United States of America | 27035972 | Proc Natl Acad Sci U S A | 2016 Apr 12 |
| Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering. | Wall ME, Van Benschoten AH, Sauter NK, Adams PD, Fraser JS, Terwilliger TC | Proceedings of the National Academy of Sciences of the United States of America | 25453071 | Proc Natl Acad Sci U S A | 2014 Dec 16 |
| Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR. | Fenwick RB, van den Bedem H, Fraser JS, Wright PE | Proceedings of the National Academy of Sciences of the United States of America | 24474795 | Proc Natl Acad Sci U S A | 2014 Jan 28 |
| Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR. | Keedy DA, van den Bedem H, Sivak DA, Petsko GA, Ringe D, Wilson MA, Fraser JS | Structure (London, England : 1993) | 24882744 | Structure | 2014 Jun 10 |
| E pluribus unum, no more: from one crystal, many conformations. | Woldeyes RA, Sivak DA, Fraser JS | Current opinion in structural biology | 25113271 | Curr Opin Struct Biol | 2014 Oct |
| Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder. | Dellus-Gur E, Elias M, Caselli E, Prati F, Salverda ML, de Visser JA, Fraser JS, Tawfik DS | Journal of molecular biology | 26004540 | J Mol Biol | 2015 Jul 17 |
| EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. | Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS | Nature methods | 26280328 | Nat Methods | 2015 Oct |
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| Discussion on Covariate-assisted ranking and screening for large-scale two-sample inference. | Yu G, Bien J, Witten D | Journal of the Royal Statistical Society. Series B, Statistical methodology | 31178656 | J R Stat Soc Series B Stat Methodol | 2019 Apr |
| Penalized unsupervised learning with outliers. | Witten DM | Statistics and its interface | 23875057 | Stat Interface | 2013 |
| SCALPEL: EXTRACTING NEURONS FROM CALCIUM IMAGING DATA. | Petersen A, Simon N, Witten D | The annals of applied statistics | 30510612 | Ann Appl Stat | 2018 Dec |
| Massively parallel functional dissection of mammalian enhancers in vivo. | Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J | Nature biotechnology | 22371081 | Nat Biotechnol | 2012 Feb 26 |
| Nearly assumptionless screening for the mutually-exciting multivariate Hawkes process. | Chen S, Witten D, Shojaie A | Electronic journal of statistics | 28845209 | Electron J Stat | 2017 |
| Node-Based Learning of Multiple Gaussian Graphical Models. | Mohan K, London P, Fazel M, Witten D, Lee SI | Journal of machine learning research : JMLR | 25309137 | J Mach Learn Res | 2014 Jan 1 |
| Structured Learning of Gaussian Graphical Models. | Mohan K, Chung MJ, Han S, Witten D, Lee SI, Fazel M | Advances in neural information processing systems | 25360066 | Adv Neural Inf Process Syst | 2012 |
| The cluster graphical lasso for improved estimation of Gaussian graphical models. | Tan KM, Witten D, Shojaie A | Computational statistics & data analysis | 25642008 | Comput Stat Data Anal | 2015 May |
| Learning Graphical Models With Hubs. | Tan KM, London P, Mohan K, Lee SI, Fazel M, Witten D | Journal of machine learning research : JMLR | 25620891 | J Mach Learn Res | 2014 Oct |
| Multi-scale network regression for brain-phenotype associations. | Xia CH, Ma Z, Cui Z, Bzdok D, Thirion B, Bassett DS, Satterthwaite TD, Shinohara RT, Witten DM | Human brain mapping | 32216125 | Hum Brain Mapp | 2020 Jul |
| Testing for a Change in Mean After Changepoint Detection. | Jewell S, Fearnhead P, Witten D | Journal of the Royal Statistical Society. Series B, Statistical methodology | 36419504 | J R Stat Soc Series B Stat Methodol | 2022 Sep |
| Controlling costs: Feature selection on a budget. | Yu G, Witten D, Bien J | Stat | 38250253 | Stat | 2022 Dec |
| Sparse Biclustering of Transposable Data. | Tan KM, Witten DM | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 25364221 | J Comput Graph Stat | 2014 |
| Inferring clonal composition from multiple sections of a breast cancer. | Zare H, Wang J, Hu A, Weber K, Smith J, Nickerson D, Song C, Witten D, Blau CA, Noble WS | PLoS computational biology | 25010360 | PLoS Comput Biol | 2014 Jul |
| Pathway Graphical Lasso. | Grechkin M, Fazel M, Witten D, Lee SI | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence | 26167394 | Proc AAAI Conf Artif Intell | 2015 Jan |
| Adaptive nonparametric regression with the K-nearest neighbour fused lasso. | Madrid Padilla OH, Sharpnack J, Chen Y, Witten DM | Biometrika | 32454528 | Biometrika | 2020 Jun |
| EXACT SPIKE TRAIN INFERENCE VIA ℓ(0) OPTIMIZATION. | Jewell S, Witten D | The annals of applied statistics | 30627301 | Ann Appl Stat | 2018 Dec |
| Data-adaptive additive modeling. | Petersen A, Witten D | Statistics in medicine | 30010200 | Stat Med | 2019 Feb 20 |
| Hypothesis testing for differentially correlated features. | Sheng E, Witten D, Zhou XH | Biostatistics (Oxford, England) | 27044327 | Biostatistics | 2016 Oct |
| Molecular signatures from omics data: from chaos to consensus. | Sung J, Wang Y, Chandrasekaran S, Witten DM, Price ND | Biotechnology journal | 22528809 | Biotechnol J | 2012 Aug |
| A general framework for estimating the relative pathogenicity of human genetic variants. | Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J | Nature genetics | 24487276 | Nat Genet | 2014 Mar |
| Testing for association in multiview network data. | Gao LL, Witten D, Bien J | Biometrics | 33792914 | Biometrics | 2022 Sep |
| Replicates in high dimensions, with applications to latent variable graphical models. | Tan KM, Ning Y, Witten DM, Liu H | Biometrika | 28736452 | Biometrika | 2016 Dec |
| On the assessment of statistical significance of three-dimensional colocalization of sets of genomic elements. | Witten DM, Noble WS | Nucleic acids research | 22266657 | Nucleic Acids Res | 2012 May |
| The Cluster Elastic Net for High-Dimensional Regression With Unknown Variable Grouping. | Witten DM, Shojaie A, Zhang F | Technometrics : a journal of statistics for the physical, chemical, and engineering sciences | 24817772 | Technometrics | 2014 Feb 20 |
| The joint graphical lasso for inverse covariance estimation across multiple classes. | Danaher P, Wang P, Witten DM | Journal of the Royal Statistical Society. Series B, Statistical methodology | 24817823 | J R Stat Soc Series B Stat Methodol | 2014 Mar |
| Graph Estimation with Joint Additive Models. | Voorman A, Shojaie A, Witten D | Biometrika | 25013234 | Biometrika | 2014 Mar 1 |
| Network Reconstruction From High-Dimensional Ordinary Differential Equations. | Chen S, Shojaie A, Witten DM | Journal of the American Statistical Association | 29618851 | J Am Stat Assoc | 2017 |
| Are clusterings of multiple data views independent? | Gao LL, Bien J, Witten D | Biostatistics (Oxford, England) | 30753304 | Biostatistics | 2020 Oct 1 |
| Fast nonconvex deconvolution of calcium imaging data. | Jewell SW, Hocking TD, Fearnhead P, Witten DM | Biostatistics (Oxford, England) | 30753436 | Biostatistics | 2020 Oct 1 |
| Flexible and Interpretable Models for Survival Data. | Wu J, Witten D | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 32704224 | J Comput Graph Stat | 2019 |
| MODELING MICROBIAL ABUNDANCES AND DYSBIOSIS WITH BETA-BINOMIAL REGRESSION. | Martin BD, Witten D, Willis AD | The annals of applied statistics | 32983313 | Ann Appl Stat | 2020 Mar |
| Loss of MeCP2 Causes Urological Dysfunction and Contributes to Death by Kidney Failure in Mouse Models of Rett Syndrome. | Ward CS, Huang TW, Herrera JA, Samaco RC, Pitcher MR, Herron A, Skinner SA, Kaufmann WE, Glaze DG, Percy AK, Neul JL | PloS one | 27828991 | PLoS One | 2016 |
| Loss of MeCP2 in the rat models regression, impaired sociability and transcriptional deficits of Rett syndrome. | Veeraragavan S, Wan YW, Connolly DR, Hamilton SM, Ward CS, Soriano S, Pitcher MR, McGraw CM, Huang SG, Green JR, Yuva LA, Liang AJ, Neul JL, Yasui DH, LaSalle JM, Liu Z, Paylor R, Samaco RC | Human molecular genetics | 27365498 | Hum Mol Genet | 2016 Aug 1 |
| Combinatorial therapy discovery using mixed integer linear programming. | Pang K, Wan YW, Choi WT, Donehower LA, Sun J, Pant D, Liu Z | Bioinformatics (Oxford, England) | 24463180 | Bioinformatics | 2014 May 15 |
| Genetic rodent models of brain disorders: Perspectives on experimental approaches and therapeutic strategies. | McGraw CM, Ward CS, Samaco RC | American journal of medical genetics. Part C, Seminars in medical genetics | 28910526 | Am J Med Genet C Semin Med Genet | 2017 Sep |
| Forniceal deep brain stimulation rescues hippocampal memory in Rett syndrome mice. | Hao S, Tang B, Wu Z, Ure K, Sun Y, Tao H, Gao Y, Patel AJ, Curry DJ, Samaco RC, Zoghbi HY, Tang J | Nature | 26469053 | Nature | 2015 Oct 15 |
| Otud7a Knockout Mice Recapitulate Many Neurological Features of 15q13.3 Microdeletion Syndrome. | Yin J, Chen W, Chao ES, Soriano S, Wang L, Wang W, Cummock SE, Tao H, Pang K, Liu Z, Pereira FA, Samaco RC, Zoghbi HY, Xue M, Schaaf CP | American journal of human genetics | 29395075 | Am J Hum Genet | 2018 Feb 1 |
