NIH Director's Early Independence Award
NIH Director's Early Independence Award
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date | PubMedLink |
|---|---|---|---|---|---|---|
| Global connectivity and local excitability changes underlie antidepressant effects of repetitive transcranial magnetic stimulation. | Eshel N, Keller CJ, Wu W, Jiang J, Mills-Finnerty C, Huemer J, Wright R, Fonzo GA, Ichikawa N, Carreon D, Wong M, Yee A, Shpigel E, Guo Y, McTeague L, Maron-Katz A, Etkin A | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32053828 | Neuropsychopharmacology | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32053828 |
| Theta-burst direct electrical stimulation remodels human brain networks. | Huang Y, Zelmann R, Hadar P, Dezha-Peralta J, Richardson RM, Williams ZM, Cash SS, Keller CJ, Paulk AC | Nature communications | 39143083 | Nat Commun | 2024 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/39143083 |
| Neural effects of TMS trains on the human prefrontal cortex. | Ross JM, Cline CC, Sarkar M, Truong J, Keller CJ | bioRxiv : the preprint server for biology | 36778457 | bioRxiv | 2023 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/36778457 |
| Editorial: Inter- and Intra-subject Variability in Brain Imaging and Decoding. | Wei CS, Keller CJ, Li J, Lin YP, Nakanishi M, Wagner J, Wu W, Zhang Y, Jung TP | Frontiers in computational neuroscience | 34912203 | Front Comput Neurosci | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34912203 |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 36711689 | bioRxiv | 2023 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/36711689 |
| Direct cortical stimulation induces short-term plasticity of neural oscillations in humans. | Munot S, Kim N, Huang Y, Keller CJ | bioRxiv : the preprint server for biology | 38014071 | bioRxiv | 2023 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/38014071 |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 37732239 | bioRxiv | 2023 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/37732239 |
| Dorsolateral prefrontal cortex TMS evokes responses in the subgenual anterior cingulate cortex: Evidence from human intracranial EEG. | Trapp NT, Liu X, Li Z, Bruss J, Keller CJ, Boes AD, Jiang J | bioRxiv : the preprint server for biology | 39763715 | bioRxiv | 2024 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/39763715 |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | Cerebral cortex (New York, N.Y. : 1991) | 38596882 | Cereb Cortex | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38596882 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | Brain stimulation | 38821396 | Brain Stimul | 2024 May-Jun | https://www.ncbi.nlm.nih.gov/pubmed/38821396 |
| Simultaneous invasive and non-invasive recordings in humans: A novel Rosetta stone for deciphering brain activity. | Pigorini A, Avanzini P, Barborica A, Bénar CG, David O, Farisco M, Keller CJ, Manfridi A, Mikulan E, Paulk AC, Roehri N, Subramanian A, Vulliémoz S, Zelmann R | Journal of neuroscience methods | 38734149 | J Neurosci Methods | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38734149 |
| Sensory Entrained TMS (seTMS) enhances motor cortex excitability. | Ross JM, Forman L, Gogulski J, Hassan U, Cline CC, Parmigiani S, Truong J, Hartford JW, Chen NF, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | bioRxiv : the preprint server for biology | 39651225 | bioRxiv | 2024 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/39651225 |
| Sensory Entrained TMS (seTMS) Enhances Motor Cortex Excitability. | Ross JM, Forman L, Gogulski J, Hassan U, Cline CC, Parmigiani S, Truong J, Hartford JW, Chen NF, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | Human brain mapping | 40622189 | Hum Brain Mapp | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40622189 |
| Sensory Entrained TMS (seTMS) enhances motor cortex plasticity. | Ross JM, Forman L, Hassan U, Gogulski J, Truong J, Cline CC, Parmigiani S, Chen NF, Hartford JW, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | bioRxiv : the preprint server for biology | 40777444 | bioRxiv | 2025 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/40777444 |
| A Practical Preprocessing Pipeline for Concurrent TMS-iEEG: Critical Steps and Methodological Considerations. | Li Z, Liu X, Tatz J, Hassan U, Wang JB, Keller CJ, Trapp NT, Boes AD, Jiang J | bioRxiv : the preprint server for biology | 40894703 | bioRxiv | 2025 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/40894703 |
| Reliability and Validity of Transcranial Magnetic Stimulation-Electroencephalography Biomarkers. | Parmigiani S, Ross JM, Cline CC, Minasi CB, Gogulski J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36894435 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36894435 |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology | 38865780 | Clin Neurophysiol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38865780 |
| Distinct neural temporal architectures encode rapid social expressions and sustained internal mood states. | Kakusa B, Gopal JR, Forman L, Hartford JW, Brennan T, Pantis S, Persad AR, Cline CC, Buch VP, Parvizi J, Huang Y, Keller CJ | bioRxiv : the preprint server for biology | 41446192 | bioRxiv | 2025 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/41446192 |
| Experimental suppression of transcranial magnetic stimulation-electroencephalography sensory potentials. | Ross JM, Sarkar M, Keller CJ | Human brain mapping | 35770956 | Hum Brain Mapp | 2022 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/35770956 |
| Noninvasive profiling of input-output excitability curves in human prefrontal cortex. | Chen NF, Hassan U, Ross JM, Forman L, Hartford JW, Gogulski J, Parmigiani S, Truong J, Keller CJ, Cline CC | bioRxiv : the preprint server for biology | 41040393 | bioRxiv | 2025 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/41040393 |
| Dorsolateral prefrontal cortex TMS evokes responses in the subgenual anterior cingulate cortex: Intracranial EEG evidence from two human cases. | Trapp NT, Liu X, Li Z, Bruss J, Keller CJ, Boes AD, Jiang J | Brain stimulation | 40516648 | Brain Stimul | 2025 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/40516648 |
| Scalp EEG predicts intracranial brain activity in humans. | Subramanian AK, Talbot A, Kim N, Parmigiani S, Cline CC, Solomon EA, Hartford JW, Huang Y, Mikulan E, Zauli FM, d'Orio P, Cardinale F, Mannini F, Pigorini A, Keller CJ | bioRxiv : the preprint server for biology | 40291696 | bioRxiv | 2025 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/40291696 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | bioRxiv : the preprint server for biology | 37645954 | bioRxiv | 2023 Nov 19 | https://www.ncbi.nlm.nih.gov/pubmed/37645954 |
| Personalized Repetitive Transcranial Magnetic Stimulation for Depression. | Gogulski J, Ross JM, Talbot A, Cline CC, Donati FL, Munot S, Kim N, Gibbs C, Bastin N, Yang J, Minasi C, Sarkar M, Truong J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36792455 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36792455 |
| Real-time optimization to enhance noninvasive cortical excitability assessment in the human dorsolateral prefrontal cortex. | Parmigiani S, Cline CC, Sarkar M, Forman L, Truong J, Ross JM, Gogulski J, Keller CJ | bioRxiv : the preprint server for biology | 38853941 | bioRxiv | 2024 May 31 | https://www.ncbi.nlm.nih.gov/pubmed/38853941 |
| A practical preprocessing pipeline for concurrent TMS-iEEG: Critical steps and methodological considerations. | Li Z, Liu X, Tatz JR, Tsang EW, Hassan U, Wang JB, Keller CJ, Trapp NT, Boes AD, Jiang J | NeuroImage | 41448514 | Neuroimage | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41448514 |
| Endocrine disrupting chemicals and female sexual health: An emerging research priority. | Bond J, Schildroth S, Wise LA | Environmental research | 40897225 | Environ Res | 2025 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/40897225 |
| Consistency of Adolescent Self-Report of Age at First Engagement in Five Sexual Behaviors. | Bond JC, Ybarra ML, Ranker LR, Nelson KM | Journal of sex research | 41587090 | J Sex Res | 2026 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/41587090 |
| Programmed ribosomal frameshifting during PLEKHM2 mRNA decoding generates a constitutively active proteoform that supports myocardial function. | Loughran G, De Pace R, Ding N, Zhang J, Jungreis I, Carancini G, Mudge JM, Wang J, Kellis M, Atkins JF, Baranov PV, Firth AE, Li X, Bonifacino JS, Khan YA | Science advances | 41134891 | Sci Adv | 2025 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/41134891 |
| Integrative In Silico and In Vitro Screening of Low Molecular Weight Compounds Targeting SARS-CoV-2 RNA Elements. | Toews S, Ceylan B, Wacker A, Ken M, Schwalbe H | Chembiochem : a European journal of chemical biology | 41317062 | Chembiochem | 2025 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/41317062 |
| RNA ensembles from in vitro to in vivo: Toward predictive models of RNA cellular function. | Li CY, Sandhu S, Ken ML | Current opinion in structural biology | 39401473 | Curr Opin Struct Biol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39401473 |
| The Cognitive-Affective Social Processing and Emotion Regulation (CASPER) model. | Camacho MC, Deshpande E, Perino MT | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 40908288 | Neuropsychopharmacology | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/40908288 |
| Highlights of the 2023 Fetal, Infant, and Toddler Neuroimaging Group annual meeting. | Sylvester CM, Korom M, Camacho MC, Shultz S, Arichi T | Developmental cognitive neuroscience | 40447482 | Dev Cogn Neurosci | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40447482 |
| Enhancer activation from transposable elements in extrachromosomal DNA. | Kraft K, Murphy SE, Jones MG, Shi Q, Bhargava-Shah A, Luong C, Hung KL, He BJ, Li R, Kuk Park S, Montgomery MT, Weiser NE, Wang Y, Luebeck J, Bafna V, Boeke JD, Mischel PS, Boettiger AN, Chang HY | bioRxiv : the preprint server for biology | 39282372 | bioRxiv | 2025 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/39282372 |
| Enhancer activation from transposable elements in extrachromosomal DNA. | Kraft K, Murphy SE, Jones MG, Shi Q, Bhargava-Shah A, Luong C, Hung KL, He BJ, Li R, Park SK, Montgomery MT, Weiser NE, Wang Y, Luebeck J, Bafna V, Boeke JD, Mischel PS, Boettiger AN, Chang HY | Nature cell biology | 41120733 | Nat Cell Biol | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/41120733 |
| Convergent motifs of early olfactory processing are recapitulated by layer-wise efficient coding. | Del Castillo JCF, Pashakhanloo F, Murthy VN, Zavatone-Veth JA | bioRxiv : the preprint server for biology | 40950075 | bioRxiv | 2025 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/40950075 |
| Dynamically Learning to Integrate in Recurrent Neural Networks. | Bordelon B, Cotler J, Pehlevan C, Zavatone-Veth JA | ArXiv | 40196143 | ArXiv | 2025 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/40196143 |
| Summary statistics of learning link changing neural representations to behavior. | Zavatone-Veth JA, Bordelon B, Pehlevan C | ArXiv | 40313661 | ArXiv | 2025 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/40313661 |
| Combining Sampling Methods with Attractor Dynamics in Spiking Models of Head-Direction Systems. | Pjanovic V, Zavatone-Veth J, Masset P, Keemink S, Nardin M | bioRxiv : the preprint server for biology | 40060526 | bioRxiv | 2025 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/40060526 |
| A note on the dynamics of extended-context disordered kinetic spin models. | Zavatone-Veth JA, Pehlevan C | Journal of physics. A, Mathematical and theoretical | 41583832 | J Phys A Math Theor | 2026 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/41583832 |
| Summary statistics of learning link changing neural representations to behavior. | Zavatone-Veth JA, Bordelon B, Pehlevan C | Frontiers in neural circuits | 40951768 | Front Neural Circuits | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40951768 |
| Convergent motifs of early olfactory processing are recapitulated by layer-wise efficient coding. | Del Castillo JCF, Pashakhanloo F, Murthy VN, Zavatone-Veth JA | Proceedings of the National Academy of Sciences of the United States of America | 41875150 | Proc Natl Acad Sci U S A | 2026 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/41875150 |
| Simultaneous detection and estimation in olfactory sensing. | Jiang C, He MY, Murthy VN, Pehlevan C, Zavatone-Veth JA, Masset P | bioRxiv : the preprint server for biology | 41279341 | bioRxiv | 2025 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/41279341 |
| Genome-wide screening reveals producer-cell modifications that improve virus-like particle production and delivery potency. | Ly D, Jang H, Goel A, Singh A, Raguram A | bioRxiv : the preprint server for biology | 41684938 | bioRxiv | 2026 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/41684938 |
| Comprehensive Curation and Harmonization of Small-Molecule MS/MS Libraries in Spectraverse. | Gupta V, Qiang H, Chung HH, Herbst E, Skinnider MA | Analytical chemistry | 41582521 | Anal Chem | 2026 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/41582521 |
| Psychometrics of the Children's Report of Parental Behavior Inventory among caregivers and youth with HIV. | Rodriguez VJ, Kendall AD, Cohen MH, Nsanzimana S, Ingabire C, Remera E, Donenberg G | Journal of family psychology : JFP : journal of the Division of Family Psychology of the American Psychological Association (Division 43) | 38451718 | J Fam Psychol | 2024 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/38451718 |
| Disentangling the Heterogeneity in Minority Stress: A Data Mining Approach. | Liu Q, Rodriguez VJ, Nestor BA, Trichtinger LA, Chandler C, Friedman MR | Archives of sexual behavior | 40940595 | Arch Sex Behav | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40940595 |
| Assessing parenting in racially and ethnically diverse families: A lack of measurement equivalence. | Rodriguez VJ, Cadet GJ, Sisitsky M, Cooley C, Acosta J, Coles E, Charity-Parker B, Walters A, Shaffer A, Parent J | Journal of family psychology : JFP : journal of the Division of Family Psychology of the American Psychological Association (Division 43) | 37141011 | J Fam Psychol | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37141011 |
| Family Influences on Antiretroviral Therapy Adherence in Youth with HIV in the United States: A Systematic Review. | Rodriguez VJ, Gessert M, Guerra A | AIDS and behavior | 40289039 | AIDS Behav | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40289039 |
| Parental depressive symptoms and child psychopathology: Indirect effects of parenting-specific emotion regulation and emotion socialization. | Rodriguez VJ, Zegarac MC, Brumbaugh TS, La Barrie DL, Terry JB, Shaffer A | Family relations | 40452872 | Fam Relat | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40452872 |
| Parent discrimination clusters and pediatric health in a national survey: The modifying effect of parenting. | Rodriguez VJ, La Barrie DL | SSM - population health | 40034937 | SSM Popul Health | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40034937 |
| MDMA enhances positive affective responses to social feedback. | Bershad AK, Hsu DT, de Wit H | Journal of psychopharmacology (Oxford, England) | 38279662 | J Psychopharmacol | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38279662 |
| The 3,4-methylenedioxymethamphetamine enhances early visual processing for salient socio-emotional stimuli. | Haggarty CJ, Bershad AK, Kumar MK, Lee R, de Wit H | The European journal of neuroscience | 38637983 | Eur J Neurosci | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38637983 |
| Altered States and Social Bonds: Effects of MDMA and Serotonergic Psychedelics on Social Behavior as a Mechanism Underlying Substance-Assisted Therapy. | Schmid Y, Bershad AK | Biological psychiatry. Cognitive neuroscience and neuroimaging | 38341085 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38341085 |
| For those with schizophrenia, does cannabidiol make cannabis use safer? | Bershad AK | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 40859007 | Neuropsychopharmacology | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40859007 |
| Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology. | Chen H, Venkatesh MS, Gόmez Ortega J, Mahesh SV, Nandi TN, Madduri RK, Pelka K, Theodoris CV | Nature computational science | 41896605 | Nat Comput Sci | 2026 Mar 27 | https://www.ncbi.nlm.nih.gov/pubmed/41896605 |
| Quantized multi-task learning for context-specific representations of gene network dynamics. | Chen H, Venkatesh MS, Ortega JG, Mahesh SV, Nandi TN, Madduri RK, Pelka K, Theodoris CV | bioRxiv : the preprint server for biology | 39229018 | bioRxiv | 2024 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/39229018 |
| Multiplex generation and single cell analysis of structural variants in a mammalian genome. | Pinglay S, Lalanne JB, Daza RM, Koeppel J, Li X, Lee DS, Shendure J | bioRxiv : the preprint server for biology | 38405830 | bioRxiv | 2024 Feb 12 | https://www.ncbi.nlm.nih.gov/pubmed/38405830 |
| Multiplex generation and single-cell analysis of structural variants in mammalian genomes. | Pinglay S, Lalanne JB, Daza RM, Kottapalli S, Quaisar F, Koeppel J, Garge RK, Li X, Lee DS, Shendure J | Science (New York, N.Y.) | 39883753 | Science | 2025 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/39883753 |
| Mammalian genome writing: Unlocking new length scales for genome engineering. | Pinglay S, Atwater JT, Brosh R, Shendure J, Maurano MT, Boeke JD | Cell | 41576918 | Cell | 2026 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/41576918 |
| Neonatal microglia replacement in mice modulates seizure severity in adulthood. | O'Brien CA, Delcy SAS, Shukla S, Levitt EM, Cohen AS, Bennett ML, Bennett FC | Molecular therapy : the journal of the American Society of Gene Therapy | 40873033 | Mol Ther | 2025 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/40873033 |
| Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières syndrome neuropathology. | Nemec KM, Uy G, Chaluvadi VS, Purnell FS, Elfayoumi B, Byerly L, O'Reilly ML, O'Brien CA, Aisenberg WH, Lombroso SI, Guo X, Blank N, Oon CH, Yaqoob F, Temsamrit B, Rawat P, Thaiss CA, Bailis W, Williamson AP, Wang Q, Bennett ML, Bennett FC | eLife | 41589671 | Elife | 2026 Jan 27 | https://www.ncbi.nlm.nih.gov/pubmed/41589671 |
| The prototypical interferonopathy: Aicardi-Goutières syndrome from bedside to bench. | Hofer MJ, Modesti N, Coufal NG, Wang Q, Sase S, Miner JJ, Vanderver A, Bennett ML | Immunological reviews | 39473130 | Immunol Rev | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39473130 |
| Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières Syndrome neuropathology. | Nemec KM, Uy G, Chaluvadi VS, Purnell FS, Elfayoumi B, Byerly L, O'Reilly ML, O'Brien CA, Aisenberg WH, Lombroso SI, Guo X, Blank N, Oon CH, Yaqoob F, Temsamrit B, Rawat P, Thaiss CA, Bailis W, Williamson AP, Wang Q, Bennett ML, Bennett FC | bioRxiv : the preprint server for biology | 39345609 | bioRxiv | 2025 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/39345609 |
| Microglia replacement by peripheral delivery of CSF1R inhibitor-resistant hematopoietic cells. | Lombroso SI, Church EI, Anderson RN, O'Brien CA, Zhu Y, Dar AA, Purnell FS, Levitt EM, Temsamrit B, Yaqoob F, Aisenberg WH, Davis M, Elfayoumi B, Chaluvadi S, Nemec KM, Axsom J, Shapiro DA, Oon CH, Chadarevian JP, Assenmacher CA, De Arcangeli S, Banerjee E, Shukla S, Davtyan H, Bailis W, Hunter CA, Blurton-Jones M, Bennett ML, Haney MS, Bennett FC | Molecular therapy : the journal of the American Society of Gene Therapy | 41232525 | Mol Ther | 2026 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/41232525 |
| Basic Microglial Functions and How They Go Awry in Neurodegenerative Disease. | McKinney JE, Bennett ML, Bennett FC | Annual review of pathology | 41587891 | Annu Rev Pathol | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41587891 |
| Targeting DNA-LNPs to Endothelial Cells Improves Expression Magnitude, Duration, and Specificity. | Marzolini N, Brysgel TV, Rahman RJ, Essien EO, Nwe SY, Wu J, Majumder A, Patel MN, Tiwari S, Espy CL, Dong F, Santos-De León SA, Shah A, Shuvaev VV, Hood ED, Chase LS, Weissman D, Katzen JB, Frank DB, Bennett ML, Marcos-Contreras OA, Myerson JW, Muzykantov VR, Reyes-Esteves S, Brenner JS | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 41556437 | Adv Sci (Weinh) | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41556437 |
| Direct microglia replacement reveals pathologic and therapeutic contributions of brain macrophages to a monogenic neurological disease. | Aisenberg WH, O'Brien CA, Sangster M, Yaqoob F, Zhang Y, Temsamrit B, Thom S, Gosse L, Chaluvadi S, Elfayomi B, Lee G, Polam V, Levitt EM, Liu G, Lombroso SI, Nemec KM, Clowry G, Nieves C, Rawat P, Church E, Martinez D, Shoffler C, Kancheva D, Petucci C, Taylor D, Kofler J, Erskine D, Movahedi K, Bennett ML, Bennett FC | Immunity | 40311614 | Immunity | 2025 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/40311614 |
| ComBatLS: A location- and scale-preserving method for multi-site image harmonization. | Gardner M, Shinohara RT, Bethlehem RAI, Romero-Garcia R, Warrier V, Dorfschmidt L, Lifespan Brain Chart Consortium, Shanmugan S, Thompson P, Seidlitz J, Alexander-Bloch AF, Chen AA | bioRxiv : the preprint server for biology | 39131292 | bioRxiv | 2024 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/39131292 |
| Reproducible Sex Differences in Personalized Functional Network Topography in Youth. | Keller AS, Sun KY, Francisco A, Robinson H, Beydler E, Bassett DS, Cieslak M, Cui Z, Davatzikos C, Fan Y, Gardner M, Kishton R, Kornfield SL, Larsen B, Li H, Linder I, Pines A, Pritschet L, Raznahan A, Roalf DR, Seidlitz J, Shafiei G, Shinohara RT, Wolf DH, Alexander-Bloch A, Satterthwaite TD, Shanmugan S | bioRxiv : the preprint server for biology | 39386637 | bioRxiv | 2024 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/39386637 |
| ComBatLS: A Location- and Scale-Preserving Method for Multi-Site Image Harmonization. | Gardner M, Shinohara RT, Bethlehem RAI, Romero-Garcia R, Warrier V, Dorfschmidt L, Lifespan Brain Chart Consortium, Shanmugan S, Thompson P, Seidlitz J, Alexander-Bloch AF, Chen AA | Human brain mapping | 40497521 | Hum Brain Mapp | 2025 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/40497521 |
| Reproducible sex differences in personalised functional network topography in youth. | Keller AS, Sun KY, Francisco A, Robinson H, Beydler E, Bassett DS, Cieslak M, Cui Z, Davatzikos C, Fan Y, Gardner M, Kishton R, Kornfield SL, Larsen B, Li H, Linder I, Pines A, Pritschet L, Raznahan A, Roalf DR, Seidlitz J, Shafiei G, Shinohara RT, White LK, Wolf DH, Alexander-Bloch A, Satterthwaite TD, Shanmugan S | The British journal of psychiatry : the journal of mental science | 40536230 | Br J Psychiatry | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40536230 |
| Evidence for missed cases of postpartum depression based on paediatric clinical care screenings. | White LK, Perlstein S, Gorgone A, Himes MM, Kornfield SL, Shanmugan S, Weitz E, Njoroge WFM, Duncan AF, Burris HH, Laney N, Gur RE, Waller RE, Chaiyachati BH | The British journal of psychiatry : the journal of mental science | 40545256 | Br J Psychiatry | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40545256 |
| An open, fully-processed data resource for studying mood and sleep variability in the developing brain. | Brook JBH, Salo T, Luo AC, Bagautdinova J, Rush S, Alexander-Bloch AF, Baller EB, Calkins ME, Cieslak M, Cooper EC, Detre JA, Elliot MA, Fair DA, Freedman P, Gehrman PR, Gur RC, Gur RE, Klein A, Laney N, Laumann TO, Mehta K, Merikangas K, Milham MP, Mitchell JA, Moore TM, Nelson SM, Ruparel K, Sevchik BL, Shanmugan S, Shou H, Taso M, White LK, Wolf DH, Tisdall MD, Roalf DR, Satterthwaite TD | bioRxiv : the preprint server for biology | 40463267 | bioRxiv | 2025 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/40463267 |
| Toward personalized clinical interventions for perinatal depression: Leveraging precision functional mapping. | Pritschet L, Beydler E, Shanmugan S | Science advances | 40043108 | Sci Adv | 2025 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/40043108 |
| Generalizable Links Between Borderline Personality Traits and Functional Connectivity. | Shafiei G, Keller AS, Bertolero M, Shanmugan S, Bassett DS, Chen AA, Covitz S, Houghton A, Luo A, Mehta K, Salo T, Shinohara RT, Fair D, Hallquist MN, Satterthwaite TD | Biological psychiatry | 38460580 | Biol Psychiatry | 2024 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/38460580 |
| Projections between the globus pallidus externa and cortex span motor and non-motor regions. | Ferenczi EA, Wang W, Biswas A, Pottala T, Dong Y, Chan AK, Albanese MA, Sohur RS, Jia T, Mastro KJ, Sabatini BL | bioRxiv : the preprint server for biology | 39574769 | bioRxiv | 2024 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/39574769 |
| Reciprocal projections between the globus pallidus externa and cortex span motor and nonmotor regions. | Ferenczi EA, Wang W, Biswas A, Pottala T, Dong Y, Chan AK, Albanese MA, Sohur RS, Jia T, Mastro KJ, Sabatini BL | Proceedings of the National Academy of Sciences of the United States of America | 40460125 | Proc Natl Acad Sci U S A | 2025 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/40460125 |
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| A spatiotemporal map of co-receptor signaling networks underlying B cell activation. | Susa KJ, Bradshaw GA, Eisert RJ, Schilling CM, Kalocsay M, Blacklow SC, Kruse AC | Cell reports | 38850533 | Cell Rep | 2024 Jun 25 | https://www.ncbi.nlm.nih.gov/pubmed/38850533 |
| Temporal photoproximity labeling of ligand-activated EGFR neighborhoods using MultiMap. | Lin Z, Ngo W, Chou YT, Wu H, Susa KJ, Jun YW, Bivona TG, Doudna JA, Wells JA | Nature chemical biology | 41254216 | Nat Chem Biol | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41254216 |
| Structural basis for regulation of Frizzled-4 signaling by the co-receptor Tetraspanin-12. | Granados AJ, Pratap PP, Alamo KAE, Susa KJ | bioRxiv : the preprint server for biology | 41040411 | bioRxiv | 2025 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/41040411 |
| A genome-wide association study using HapMap cell lines reveals modulators of cellular response to cyclophosphamide. | Gbadamosi MO, Bhise N, Ghosh TM, Molchan EK, Streeks K, Puglise J, Ohaegbulam A, Makarem M, Olabige O, Yang C, Ricks-Santi L, Mitchell DA, Fridley BL, Lamba JK | Future oncology (London, England) | 40356407 | Future Oncol | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40356407 |
| Chemoimmunomodulation in triple negative breast cancer: a key to maximizing anti-PD-1 chemoimmunotherapeutic efficacy. | Gbadamosi MO, Molchan E, Makarem MS, Coleman KL, Ohaegbulam AC, Streeks KH | Oncoimmunology | 40631451 | Oncoimmunology | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/40631451 |
| UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability. | Tsai JM, Aguirre JD, Li YD, Brown J, Focht V, Kater L, Kempf G, Sandoval B, Schmitt S, Rutter JC, Galli P, Sandate CR, Cutler JA, Zou C, Donovan KA, Lumpkin RJ, Cavadini S, Park PMC, Sievers Q, Hatton C, Ener E, Regalado BD, Sperling MT, Słabicki M, Kim J, Zon R, Zhang Z, Miller PG, Belizaire R, Sperling AS, Fischer ES, Irizarry R, Armstrong SA, Thomä NH, Ebert BL | Molecular cell | 37478846 | Mol Cell | 2023 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/37478846 |
| Rare heterozygous missense variants in VSX2 are associated with retinal detachment. | Brock DC, Dhindsa JS, Chen Y, Ravanmehr V, Mitchell J, Hu F, Li X, Nandigam L, Wang Q, Wu K, Butts JC, Dhindsa HS, Frankfort BJ, Tran NM, Petrovski S, Dhindsa RS | PLoS genetics | 41632798 | PLoS Genet | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41632798 |
| Population-scale sequencing resolves determinants of persistent EBV DNA. | Nyeo SS, Cumming EM, Burren OS, Pagadala MS, Gutierrez JC, Ali TA, Kida LC, Chen Y, Chu H, Hu F, Zou XZ, Hollis B, Fabre MA, MacArthur S, Wang Q, Ludwig LS, Dey KK, Petrovski S, Dhindsa RS, Lareau CA | Nature | 41606327 | Nature | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41606327 |
| A single-cell transcriptomic map of the developing Atoh1 lineage identifies neural fate decisions and neuronal diversity in the hindbrain. | Butts JC, Wu SR, Durham MA, Dhindsa RS, Revelli JP, Ljungberg MC, Saulnier O, McLaren ME, Taylor MD, Zoghbi HY | Developmental cell | 39106860 | Dev Cell | 2024 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/39106860 |
| Haploinsufficiency of ITSN1 is associated with a substantial increased risk of Parkinson's disease. | Spargo TP, Sands CF, Juan IR, Mitchell J, Ravanmehr V, Butts JC, De-Paula RB, Kim Y, Hu F, Wang Q, Vitsios D, Garg M, Middleton L, Tyrlik M, Messa M, Del Angel G, Calame DG, Saade H, Robak L, Hollis B, Cuddapah VA, Zoghbi HY, Shulman JM, Petrovski S, Al-Ramahi I, Tachmazidou I, Dhindsa RS | Cell reports | 40056900 | Cell Rep | 2025 Mar 25 | https://www.ncbi.nlm.nih.gov/pubmed/40056900 |
| Genome-wide prediction of dominant and recessive neurodevelopmental disorder-associated genes. | Dhindsa RS, Weido BA, Dhindsa JS, Shetty AJ, Sands CF, Petrovski S, Vitsios D, Zoghbi AW | American journal of human genetics | 40015282 | Am J Hum Genet | 2025 Mar 6 | https://www.ncbi.nlm.nih.gov/pubmed/40015282 |
| Novel Strategies for Improved Treatment of O6-Methylguanine-DNA Methyltransferase Promoter-Methylated Glioma. | Vasquez JC, Bindra RS, Gueble SE | Medical research archives | 41169667 | Med Res Arch | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/41169667 |
| Targeted CRISPR knockout screening identifies known and novel chemogenomic interactions between DNA damaging agents and DNA repair genes. | Heer CD, Elia JL, Menon V, Johnson SS, Arbelaez SR, Friedman S, Lopez-Giraldez F, Sundaram RK, Herzon SB, Bindra RS, Gueble SE | NAR cancer | 41522810 | NAR Cancer | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41522810 |
| DNA damage response profile distinguishes poor-acting gliomas with shared methylome signatures. | Leelatian N, Singh C, Bouffard R, Sundaram RK, Diggins KE, Sullivan W, Paradkar S, Omay ZE, Mobley BC, Gueble SE, Vasquez JC, Bindra RS | Neuro-oncology | 40887772 | Neuro Oncol | 2026 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/40887772 |
| Protocol to isolate oligodendrocytes, microglia, endothelial cells, astrocytes, and neurons from a single mouse brain using magnetic-activated cell sorting. | Houmam S, Siodlak D, Pham KD, Salinas-Salinas C, Ocañas SR, Freeman WM, Rice HC | bioRxiv : the preprint server for biology | 40832248 | bioRxiv | 2025 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/40832248 |
| Chromosomal and gonadal factors regulate microglial sex effects in the aging brain. | Ocañas SR, Ansere VA, Kellogg CM, Isola JVV, Chucair-Elliott AJ, Freeman WM | Brain research bulletin | 36804773 | Brain Res Bull | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36804773 |
| Role of Estrogen Receptor α in Aging and Chronic Disease. | Isola JVV, Ko S, Ocañas SR, Stout MB | Advances in geriatric medicine and research | 37425648 | Adv Geriatr Med Res | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37425648 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Stanford DR, Freeman WM | bioRxiv : the preprint server for biology | 37333391 | bioRxiv | 2023 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/37333391 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley K, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | bioRxiv : the preprint server for biology | 36945372 | bioRxiv | 2023 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/36945372 |
| Specificity and efficiency of tamoxifen-mediated Cre induction is equivalent regardless of age. | Kellogg CM, Pham K, Ko S, Cox JEJ, Machalinski AH, Stout MB, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | iScience | 38058312 | iScience | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/38058312 |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Thomas MA, Wright Z, Chucair-Elliott AJ, Freeman WM | Journal of neuroinflammation | 37587511 | J Neuroinflammation | 2023 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/37587511 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley KB, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | GeroScience | 37393197 | Geroscience | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37393197 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Hoolehan W, Kulpa AM, Stanford DR, Freeman WM | Epigenetics & chromatin | 37953264 | Epigenetics Chromatin | 2023 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/37953264 |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Chucair-Elliott AJ, Freeman WM | bioRxiv : the preprint server for biology | 36945656 | bioRxiv | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36945656 |
| Flow Cytometry Analysis of Microglial Phenotypes in the Murine Brain During Aging and Disease. | Cox JEJ, Pham KD, Keck AW, Wright Z, Thomas MA, Freeman WM, Ocañas SR | Bio-protocol | 38948260 | Bio Protoc | 2024 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/38948260 |
| Leveraging individual power to improve racial equity in academia. | Monari PK, Hammond ER, Malone CL, Cuarenta A, Hiura LC, Wallace KJ, Taylor L, Pradhan DS | Hormones and behavior | 37030195 | Horm Behav | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37030195 |
| Behavioral sex differences in the developmental emergence and selectivity of partner preferences in prairie voles. | Schaepe CA, Hiura LC | Hormones and behavior | 40532532 | Horm Behav | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40532532 |
| Prairie vole pair bonding and plasticity of the social brain. | Hiura LC, Donaldson ZR | Trends in neurosciences | 36369029 | Trends Neurosci | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36369029 |
| A universal method for the purification of C2H2 zinc finger arrays. | Liang J, Azubel M, Wang G, Nie Y, Kornberg RD, Beel AJ, Mattei PJ | PloS one | 39903729 | PLoS One | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/39903729 |
| Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening. | Tan J, Shenker-Tauris N, Rodriguez-Hernaez J, Wang E, Sakellaropoulos T, Boccalatte F, Thandapani P, Skok J, Aifantis I, Fenyö D, Xia B, Tsirigos A | Nature biotechnology | 36624151 | Nat Biotechnol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36624151 |
| On the genetic basis of tail-loss evolution in humans and apes. | Xia B, Zhang W, Zhao G, Zhang X, Bai J, Brosh R, Wudzinska A, Huang E, Ashe H, Ellis G, Pour M, Zhao Y, Coelho C, Zhu Y, Miller A, Dasen JS, Maurano MT, Kim SY, Boeke JD, Yanai I | Nature | 38418917 | Nature | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38418917 |
| Cellular dynamics in pig-to-human kidney xenotransplantation. | Pan W, Zhang W, Zheng B, Camellato BR, Stern J, Lin Z, Khodadadi-Jamayran A, Kim J, Sommer P, Khalil K, Weldon E, Bai J, Zhu Y, Meyn P, Heguy A, Mangiola M, Griesemer A, Keating BJ, Montgomery RA, Xia B, Boeke JD | Med (New York, N.Y.) | 38776915 | Med | 2024 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/38776915 |
| High-throughput in silico screen uncovers key regulators of 3D genome architecture. | Bai J, Lyu Q, Tan J, Issner R, Tischer B, Liu H, Goel V, Ling X, Bernstein BE, Tsirigos A, Hansen AS, Xia B | bioRxiv : the preprint server for biology | 41415375 | bioRxiv | 2025 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/41415375 |
| Multimodal learning decodes the global binding landscape of chromatin-associated proteins. | Tan J, Fu X, Ling X, Mo S, Bai J, Rabadán R, Fenyö D, Boeke JD, Tsirigos A, Xia B | bioRxiv : the preprint server for biology | 40832322 | bioRxiv | 2025 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/40832322 |
| Ignorance is Bliss? A Case of Incidental Discovery of ATM Mutation in Prostate Cancer. | Tam A, Li YR | International journal of radiation oncology, biology, physics | 38049230 | Int J Radiat Oncol Biol Phys | 2024 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/38049230 |
| Key takeaways for knowledge expansion of early-career scientists conducting Transdisciplinary Research in Energetics and Cancer (TREC): a report from the TREC Training Workshop 2022. | Kung CP, Skiba MB, Crosby EJ, Gorzelitz J, Kennedy MA, Kerr BA, Li YR, Nash S, Potiaumpai M, Kleckner AS, James DL, Coleman MF, Fairman CM, Galván GC, Garcia DO, Gordon MJ, His M, Hornbuckle LM, Kim SY, Kim TH, Kumar A, Mahé M, McDonnell KK, Moore J, Oh S, Sun X, Irwin ML | Journal of the National Cancer Institute. Monographs | 37139978 | J Natl Cancer Inst Monogr | 2023 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/37139978 |
| Experience From an Early Exposure Education Program in Radiation Oncology for High School and Undergraduate Students. | Tam A, Ladbury C, Glaser S, Amini A, Chen YJ, Li YR | Practical radiation oncology | 38810923 | Pract Radiat Oncol | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/38810923 |
| Intermittent fasting interventions to leverage metabolic and circadian mechanisms for cancer treatment and supportive care outcomes. | Kalam F, James DL, Li YR, Coleman MF, Kiesel VA, Cespedes Feliciano EM, Hursting SD, Sears DD, Kleckner AS | Journal of the National Cancer Institute. Monographs | 37139971 | J Natl Cancer Inst Monogr | 2023 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/37139971 |
| Moving the Needle Forward in Genomically-Guided Precision Radiation Treatment. | Tam A, Mercier BD, Thomas RM, Tizpa E, Wong IG, Shi J, Garg R, Hampel H, Gray SW, Williams T, Bazan JG, Li YR | Cancers | 38001574 | Cancers (Basel) | 2023 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/38001574 |
| Dietary Interventions in Cancer Treatment and Response: A Comprehensive Review. | Mercier BD, Tizpa E, Philip EJ, Feng Q, Huang Z, Thomas RM, Pal SK, Dorff TB, Li YR | Cancers | 36291933 | Cancers (Basel) | 2022 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/36291933 |
| Grade 5 Radiation Necrosis After Whole-Brain Radiation Therapy. | Tam A, Li YR, Williams T, Yoon S | Practical radiation oncology | 38431371 | Pract Radiat Oncol | 2024 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/38431371 |
| Long-Term Latency of Highly Mutated Cells in Normal Mouse Skin Is Reversed by Exposure to Tumor Promoters and Chronic Tissue Damage. | Li YR, Kandyba E, Halliwill K, Delrosario R, Tran Q, Bayani N, Wu D, Mirzoeva OK, Reeves MQ, Islam SMA, Riva L, Bergstrom EN, Achanta K, DiGiovanni J, Alexandrov LB, Balmain A | Cancer discovery | 40073432 | Cancer Discov | 2025 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/40073432 |
| High populations near fossil fuel energy infrastructure across the supply chain and implications for an equitable energy transition. | Buonocore JJ, Mooney FA, Campbell EJ, Sousa B, van Loenen B, Fabian MP, Nori-Sarma A, Willis MD | Environmental research letters : ERL [Web site] | 41255873 | Environ Res Lett | 2025 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/41255873 |
| It's electric! An environmental equity perspective on the lifecycle of our energy sources. | Willis MD, Cushing LJ, Buonocore JJ, Deziel NC, Casey JA | Environmental epidemiology (Philadelphia, Pa.) | 37064423 | Environ Epidemiol | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37064423 |
| Residential Proximity to Oil and Gas Development and Mental Health in a North American Preconception Cohort Study: 2013-2023. | Willis MD, Campbell EJ, Selbe S, Koenig MR, Gradus JL, Nillni YI, Casey JA, Deziel NC, Hatch EE, Wesselink AK, Wise LA | American journal of public health | 38991173 | Am J Public Health | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38991173 |
| A Narrative Review of Spatial-Temporal Data Sources for Estimating Population-Level Exposures to Oil and Gas Development in the United States. | Campbell EJ, Koenig MR, Mooney FA, Clark CJ, González DJX, Deziel NC, Casey JA, Buonocore JJ, Willis MD | Current environmental health reports | 40263220 | Curr Environ Health Rep | 2025 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/40263220 |
| Racialized economic segregation in relation to fecundability in a preconception cohort study. | Lovett SM, Campbell EJ, Richardson AS, Wesselink AK, Ncube CN, Cozier YC, Wise LA, Willis MD | Journal of urban health : bulletin of the New York Academy of Medicine | 41422358 | J Urban Health | 2025 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/41422358 |
| IMPACT OF BOOM-AND-BUST ECONOMIES FROM OIL AND GAS DEVELOPMENT ON PSYCHIATRIC HOSPITALIZATIONS AMONG MEDICAID BENEFICIARIES. | Willis MD, Cesare N, Harleman M, Black-Ingersoll F, Gradus JL, Thombs R, Oblath R, Buonocore JJ, Welch BM, Casey JA, Braun D, Dominici F, Nori-Sarma A | Environmental research, health : ERH | 41099011 | Environ Res Health | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/41099011 |
| Evaluating participant engagement in a preconception cohort study in relation to the Dobbs decision. | Willis MD, Hoffman MN, Wang TR, Sabbath EL, Kuriyama AS, Wesselink AK, Wise LA | Paediatric and perinatal epidemiology | 38666636 | Paediatr Perinat Epidemiol | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38666636 |
| Invited Perspective: Drilling Down into the Mechanisms Linking Oil and Gas Development to Adverse Perinatal Health Outcomes. | Casey JA, Willis MD | Environmental health perspectives | 39412280 | Environ Health Perspect | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39412280 |
| Oil and Gas Development and Adverse Birth Outcomes: A Qualitative and Quantitative Bias Analysis of the Epidemiologic Literature. | J Clark C, C Bond J, A Vrkljan K, Rowse M, Polka E, J Campbell E, K Wesselink A, Aker A, D Willis M | Current environmental health reports | 41806058 | Curr Environ Health Rep | 2026 Mar 10 | https://www.ncbi.nlm.nih.gov/pubmed/41806058 |
| Invited commentary: improving spatial exposure data for everyone-life-course social context and ascertaining residential history. | Sims KD, Glymour MM, Ncube CN, Willis MD | American journal of epidemiology | 39098825 | Am J Epidemiol | 2025 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/39098825 |
| Wildfires increasingly threaten oil and gas wells in the western United States with disproportionate impacts on marginalized populations. | González DJX, Morello-Frosch R, Liu Z, Willis MD, Feng Y, McKenzie LM, Steiger BB, Wang J, Deziel NC, Casey JA | One earth (Cambridge, Mass.) | 39036466 | One Earth | 2024 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/39036466 |
| A preconception cohort study of historical mortgage lending discrimination and present-day fecundability. | Lovett SM, Wise LA, Richardson AS, Campbell EJ, Vrkljan KA, Kirwa K, Wesselink AK, Rothman KJ, Willis MD | American journal of epidemiology | 41342351 | Am J Epidemiol | 2026 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/41342351 |
| Coupling high-throughput protease enzymology with viral replication reveals biochemical constraints of viral fitness. | Aidlen D, Vo WVT, Young NJ, Rosecrans J, Kurianowicz A, Chuo SW, Asper GPR, Anderson D, Posner JA, Muir DF, Freitas N, Ott M, Craik CS, Taha TY, Pinney MM | bioRxiv : the preprint server for biology | 41659632 | bioRxiv | 2026 Jan 28 | https://www.ncbi.nlm.nih.gov/pubmed/41659632 |
| Evolutionary-Scale Enzymology Enables Biochemical Constant Prediction Across a Multi-Peaked Catalytic Landscape. | Muir DF, Asper GPR, Notin P, Posner JA, Marks DS, Keiser MJ, Pinney MM | bioRxiv : the preprint server for biology | 39484523 | bioRxiv | 2024 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/39484523 |
| Evolutionary-scale enzymology enables exploration of a rugged catalytic landscape. | Muir DF, Asper GPR, Notin P, Posner JA, Marks DS, Keiser MJ, Pinney MM | Science (New York, N.Y.) | 40504906 | Science | 2025 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/40504906 |
| Insulin-regulated aminopeptidase is required for water excretion in response to acute hypotonic stress. | Zuchowski Y, Carty J, Terker AS, Bock F, Trapani JB, Bhave G, Watts JA, Keller S, Zhang M, Zent R, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 36995926 | Am J Physiol Renal Physiol | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36995926 |
| Deletion of KS-WNK1 promotes NCC activation by increasing WNK1/4 abundance. | Ferdaus MZ, Terker AS, Koumangoye RB, Al-Qusairi L, Welling PA, Delpire E | American journal of physiology. Renal physiology | 38961847 | Am J Physiol Renal Physiol | 2024 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/38961847 |
| Disruption of mitochondrial electron transport impairs urinary concentration via AMPK-dependent suppression of aquaporin 2. | Carty JS, Bessho R, Zuchowski Y, Trapani JB, Davidoff O, Kobayashi H, Roland JT, Watts JA, Terker AS, Bock F, Arroyo JP, Haase VH | JCI insight | 39361429 | JCI Insight | 2024 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/39361429 |
| Rac1 promotes proximal tubule kidney repair by coupling the actin cytoskeleton to mitochondrial function. | M Viquez O, Melzer M, Li S, Tantengco M, Dong X, Sha E, Huang J, Krystofiak ES, Hart RC, Luo W, Warren C, Bayazid AB, Zhang R, Bessho R, Haase VH, Brakebusch C, Inoue T, Brooks C, Wilson MH, Terker AS, Arroyo JP, Pozzi A, Zent R, Bock F | Proceedings of the National Academy of Sciences of the United States of America | 41248288 | Proc Natl Acad Sci U S A | 2025 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/41248288 |
| KCC3 is not required for the distal convoluted tubule response to reduced dietary potassium intake. | Inoue MK, Yu A, Ferdaus MZ, Zhang Y, Su XT, Bock F, Arroyo JP, Cho KY, Ellison DH, Zhang MZ, Harris RC, Delpire E, Terker AS | American journal of physiology. Renal physiology | 40875335 | Am J Physiol Renal Physiol | 2025 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/40875335 |
| VU6036720: The First Potent and Selective In Vitro Inhibitor of Heteromeric Kir4.1/5.1 Inward Rectifier Potassium Channels. | McClenahan SJ, Kent CN, Kharade SV, Isaeva E, Williams JC, Han C, Terker A, Gresham R 3rd, Lazarenko RM, Days EL, Romaine IM, Bauer JA, Boutaud O, Sulikowski GA, Harris R, Weaver CD, Staruschenko A, Lindsley CW, Denton JS | Molecular pharmacology | 35246480 | Mol Pharmacol | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35246480 |
| Kir4.2 mediates proximal potassium effects on glutaminase activity and kidney injury. | Terker AS, Zhang Y, Arroyo JP, Cao S, Wang S, Fan X, Denton JS, Zhang MZ, Harris RC | Cell reports | 36543132 | Cell Rep | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36543132 |
| K(ir)5.1-modulated potassium flux stimulates an anabolic kidney phenotype. | Wu A, Inoue MK, Zhang Y, Hasenour CM, Arroyo JP, Bock F, Yu A, Ferdaus MZ, Blackwell Y, Lazarenko RM, Young JD, Denton JS, Delpire E, Zhang MZ, Harris RC, Terker AS | iScience | 41111916 | iScience | 2025 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/41111916 |
| Plasma Potassium Negatively Correlates With Sodium Chloride Cotransporter Abundance and Phosphorylation in Urinary Extracellular Vesicles From Patients With Chronic Kidney Disease. | Wu A, Wolley MJ, Vesey D, Terker AS, Welling PA, Fenton RA, Stowasser M | Nephrology (Carlton, Vic.) | 40084744 | Nephrology (Carlton) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40084744 |
| Kidney collecting duct-derived vasopressin is not essential for appropriate concentration or dilution of urine. | Zuchowski Y, Carty JS, Trapani JB, Watts JA, Bock F, Zhang M, Terker AS, Zent R, Delpire E, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 38695074 | Am J Physiol Renal Physiol | 2024 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/38695074 |
| Myeloid EGFR deficiency accelerates recovery from AKI via macrophage efferocytosis and neutrophil apoptosis. | Pan Y, Cao S, Wang Y, Tang J, Niu A, Kar SA, Jiang M, Peng F, Siew GM, Lu W, Wang S, Wilson M, Brooks C, Fogo AB, Terker AS, Ornelas JPA, Chen J, Zhang MZ, Harris RC | Nature communications | 40379634 | Nat Commun | 2025 May 16 | https://www.ncbi.nlm.nih.gov/pubmed/40379634 |
| Rac1 promotes kidney collecting duct repair by mechanically coupling cell morphology to mitotic entry. | Bock F, Dong X, Li S, Viquez OM, Sha E, Tantengco M, Hennen EM, Plosa E, Ramezani A, Brown KL, Whang YM, Terker AS, Arroyo JP, Harrison DG, Fogo A, Brakebusch CH, Pozzi A, Zent R | Science advances | 38324689 | Sci Adv | 2024 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/38324689 |
| Macrophage SPAK deletion limits a low potassium-induced kidney inflammatory program. | Wu A, Zhang Y, Bock F, Arroyo JP, Delpire E, Zhang MZ, Harris RC, Terker AS | American journal of physiology. Renal physiology | 39298551 | Am J Physiol Renal Physiol | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39298551 |
| Bicarbonate is the primary inducer of KCC3a expression in renal cortical B-type intercalated cells. | Ferdaus MZ, Terker AS, Koumangoye R, Wall SM, Delpire E | American journal of physiology. Cell physiology | 37036298 | Am J Physiol Cell Physiol | 2023 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/37036298 |
| Low potassium activation of proximal mTOR/AKT signaling is mediated by Kir4.2. | Zhang Y, Bock F, Ferdaus M, Arroyo JP, L Rose K, Patel P, Denton JS, Delpire E, Weinstein AM, Zhang MZ, Harris RC, Terker AS | Nature communications | 38886379 | Nat Commun | 2024 Jun 17 | https://www.ncbi.nlm.nih.gov/pubmed/38886379 |
| Synaptic proteins that aggregate and degrade slower with aging accumulate in microglia. | Guldner IH, Wagner VP, Moran-Losada P, Shi SM, Chen K, Meese BT, Oh H, Le Guen Y, Lu N, Wong PS, To NS, Garceau D, Guo Z, Luo J, Sasner M, Keller A, Yang AC, Cheung T, Wyss-Coray T | bioRxiv : the preprint server for biology | 40475609 | bioRxiv | 2025 May 21 | https://www.ncbi.nlm.nih.gov/pubmed/40475609 |
| ESCRT recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like particles and enhanced antibody responses. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, Bjorkman PJ | bioRxiv : the preprint server for biology | 36597535 | bioRxiv | 2022 Dec 27 | https://www.ncbi.nlm.nih.gov/pubmed/36597535 |
| mRNA delivery of genetically encoded mosaic-8 pan-sarbecovirus RBD vaccines. | Cohen AA, Keeffe JR, Manasyan L, Madireddy I, Fils AIP, Dam KA, Stober HE, Hills RA, Moon WJ, Lin PJC, Howarth MR, Hoffmann MAG, Bjorkman PJ | bioRxiv : the preprint server for biology | 41280075 | bioRxiv | 2025 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/41280075 |
| Bivalent mRNA booster encoding virus-like particles elicits potent polyclass RBD antibodies in pre-vaccinated mice. | Fan C, Cohen AA, Dam KA, Rorick AV, Priso Fils AI, Yang Z, Gnanapragasam PNP, Segovia LN, Huey-Tubman KE, Moon WJ, Lin PJC, Bjorkman PJ, Hoffmann MAG | bioRxiv : the preprint server for biology | 40894670 | bioRxiv | 2025 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/40894670 |
| ESCRT recruitment to SARS-CoV-2 spike induces virus-like particles that improve mRNA vaccines. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, West AP Jr, Bjorkman PJ | Cell | 37146611 | Cell | 2023 May 25 | https://www.ncbi.nlm.nih.gov/pubmed/37146611 |
| N4BP1 coordinates ubiquitin-dependent crosstalk within the IκB kinase family to limit Toll-like receptor signaling and inflammation. | Gitlin AD, Maltzman A, Kanno Y, Heger K, Reja R, Schubert AF, Wierciszewski LJ, Pantua H, Kapadia SB, Harris SF, Webster JD, Newton K, Dixit VM | Immunity | 38697117 | Immunity | 2024 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/38697117 |
| Using the linear references from the pangenome to discover missing autism variants. | Sui Y, Lin J, Noyes MD, Kwon Y, Wong I, Koundinya N, Harvey WT, Wu M, Hoekzema K, Munson KM, Garcia GH, Knuth J, Wertz J, Wang T, Hennick K, Karunakaran D, Polo Prieto RA, Meyer-Schuman R, Cherry F, Pehlivan D, Suter B, Gustafson JA, Miller DE, Human Pangenome Reference Consortium (HPRC), Berk-Rauch H, Nowakowski TJ, Chakravarti A, Zoghbi HY, Eichler EE | Nature communications | 41577710 | Nat Commun | 2026 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/41577710 |
| Splice-modulating antisense oligonucleotides targeting a pathogenic intronic variant in adult polyglucosan body disease correct mis-splicing and restore enzyme activity in patient cells. | Thomas R, Miyoshi E, Akman HO, Storz SHR, Goffena J, Pytte J, Miller DE, Skourti-Stathaki K, Crooke ST | Nucleic acids research | 40671519 | Nucleic Acids Res | 2025 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/40671519 |
| Panels, Exomes, Genomes, and More-Finding the Best Path Through the Diagnostic Odyssey. | Lenahan AL, Squire AE, Miller DE | Pediatric clinics of North America | 37704349 | Pediatr Clin North Am | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37704349 |
| Combined approaches, including long-read sequencing, address the diagnostic challenge of HYDIN in primary ciliary dyskinesia. | Fleming A, Galey M, Briggs L, Edwards M, Hogg C, John S, Wilkinson S, Quinn E, Rai R, Burgoyne T, Rogers A, Patel MP, Griffin P, Muller S, Carr SB, Loebinger MR, Lucas JS, Shah A, Jose R, Mitchison HM, Shoemark A, Miller DE, Morris-Rosendahl DJ | European journal of human genetics : EJHG | 38605126 | Eur J Hum Genet | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38605126 |
| Diagnostic utility of DNA methylation analysis in genetically unsolved pediatric epilepsies and CHD2 episignature refinement. | LaFlamme CW, Rastin C, Sengupta S, Pennington HE, Russ-Hall SJ, Schneider AL, Bonkowski ES, Almanza Fuerte EP, Allan TJ, Zalusky MP, Goffena J, Gibson SB, Nyaga DM, Lieffering N, Hebbar M, Walker EV, Darnell D, Olsen SR, Kolekar P, Djekidel MN, Rosikiewicz W, McConkey H, Kerkhof J, Levy MA, Relator R, Lev D, Lerman-Sagie T, Park KL, Alders M, Cappuccio G, Chatron N, Demain L, Genevieve D, Lesca G, Roscioli T, Sanlaville D, Tedder ML, Gupta S, Jones EA, Weisz-Hubshman M, Ketkar S, Dai H, Worley KC, Rosenfeld JA, Chao HT, Undiagnosed Diseases Network, Neale G, Carvill GL, University of Washington Center for Rare Disease Research, Wang Z, Berkovic SF, Sadleir LG, Miller DE, Scheffer IE, Sadikovic B, Mefford HC | Nature communications | 39107278 | Nat Commun | 2024 Aug 6 | https://www.ncbi.nlm.nih.gov/pubmed/39107278 |
| High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SHR, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | Genome research | 39358015 | Genome Res | 2024 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/39358015 |
| Bidirectional disruption of GNAS transcripts causes broad methylation defects in pseudohypoparathyroidism type 1B. | Iwasaki Y, Reyes M, Ryabets-Lienhard A, Gales B, Linglart A, Miller DE, Salusky IB, Bastepe M, Jüppner H | Proceedings of the National Academy of Sciences of the United States of America | 40249781 | Proc Natl Acad Sci U S A | 2025 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/40249781 |
| Concordance of Whole-Genome Long-Read Sequencing with Standard Clinical Testing for Prader-Willi and Angelman Syndromes. | Paschal CR, Zalusky MPG, Beck AE, Gillentine MA, Narayanan J, Damaraju N, Goffena J, Storz SHR, Miller DE | The Journal of molecular diagnostics : JMD | 39756651 | J Mol Diagn | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39756651 |
| Long-read sequencing of hundreds of diverse brains provides insight into the impact of structural variation on gene expression and DNA methylation. | Billingsley KJ, Meredith M, Daida K, Jerez PA, Negi S, Malik L, Genner RM, Moller A, Zheng X, Gibson SB, Mastoras M, Baker B, Kouam C, Paquette K, Jarreau P, Makarious MB, Moore A, Hong S, Vitale D, Shah S, Monlong J, Pantazis CB, Asri M, Shafin K, Carnevali P, Marenco S, Auluck P, Mandal A, Miga KH, Rhie A, Reed X, Ding J, Cookson MR, Nalls M, Singleton A, Miller DE, Chaisson M, Timp W, Gibbs JR, Phillippy AM, Kolmogorov M, Jain M, Sedlazeck FJ, Paten B, Blauwendraat C | bioRxiv : the preprint server for biology | 39764002 | bioRxiv | 2024 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/39764002 |
| Patterns of crossover distribution in Drosophila mauritiana necessitate a re-thinking of the centromere effect on crossing over. | Hawley RS, Price A, Li H, Jagannathan M, Staber C, Hughes SE, Williams S, Perera A, Egidy RR, Lawlor A, Miller DE, Blumenstiel JP | Genetics | 40052765 | Genetics | 2025 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/40052765 |
| Long-Read Sequencing is Required for Precision Diagnosis of Incontinentia Pigmenti. | Wojcik MH, Clark RD, Elias AF, Genetti CA, Madden JA, Simpson D, Golkar L, Zalusky MP, Miller AL, Rodriguez A, Goffena J, Dash CA, Damaraju N, Gibson SB, Storz SH, Anderson Z, Gustafson JA, Thiffault I, Farrow EG, Pastinen T, Lin J, Huang J, Beggs AH, Agrawal PB, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Miller DT, Miller DE | Research square | 39975911 | Res Sq | 2025 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/39975911 |
| Identification of GGC Repeat Expansions in ZFHX3 among Chilean Movement Disorder Patients. | Saffie-Awad P, Moller A, Daida K, Alvarez Jerez P, Chen Z, Anderson ZB, Isayan M, Paquette K, Gibson SB, Fulcher M, Miano-Burkhardt A, Malik L, Baker B, Jarreau P, Houlden H, Ryten M, Gu B, Chaisson MJP, Miller DE, Chaná-Cuevas P, Blauwendraat C, Singleton AB, Billingsley KJ | Movement disorders : official journal of the Movement Disorder Society | 40459184 | Mov Disord | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40459184 |
| Characteristics, Genetic Testing, and Diagnoses of Infants with Neonatal Encephalopathy Not Due to Hypoxic Ischemic Encephalopathy: A Cohort Study. | Lenahan A, Mietzsch U, Wood TR, Callahan KP, Weiss EM, Miller DE, German K, Natarajan N, Puia-Dumitrescu M, Esposito V, Kolnik S, Law JB | The Journal of pediatrics | 37269901 | J Pediatr | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37269901 |
| Subdural hemorrhage, macrocephaly, rash, and developmental delay in an infant: A pathogenic variant in NLRP3 causes CINCA/NOMID. | Koti AS, Lanis A, Finlayson S, Canny S, Feldman EA, Miller DE, Rosenwasser N, Scott AA, Wong SC, Feldman KW | American journal of medical genetics. Part A | 37548074 | Am J Med Genet A | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37548074 |
| CLN2 disease resulting from a novel homozygous deep intronic splice variant in TPP1 discovered using long-read sequencing. | Steigerwald C, Borsuk J, Pappas J, Galey M, Scott A, Devaney JM, Miller DE, Abreu NJ | Molecular genetics and metabolism | 37922835 | Mol Genet Metab | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37922835 |
| Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | G3 (Bethesda, Md.) | 37552705 | G3 (Bethesda) | 2023 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/37552705 |
| Clinical RNA sequencing clarifies variants of uncertain significance identified by prior testing. | Marquez J, Cech JN, Paschal CR, Dingmann B, Scott AI, Thies JM, Mills MR, Albert CM, Beck AE, Beckman E, Bonkowski ES, Earl DL, Lam CT, Mefford HC, Merritt JL 2nd, Nelson Z, Ohlsen TJ, Taylor MR, Perlman SJ, Rudzinski ER, Sikes MC, Waligorski N, Wenger TL, Adam MP, Mirzaa GM, Bennett JT, Glass IA, Sternen DL, Miller DE | Genetics in medicine open | 39484203 | Genet Med Open | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39484203 |
| Identification of GGC Repeat Expansions in ZFHX3 Among Chilean Movement Disorder Patients. | Saffie-Awad P, Moller A, Daida K, Jerez PA, Chen Z, Anderson ZB, Isayan M, Paquette K, Gibson SB, Fulcher M, Miano-Burkhardt A, Malik L, Baker B, Jarreau P, Houlden H, Ryten M, Gu B, Chaisson MJ, Miller DE, Chaná-Cuevas P, Blauwendraat C, Singleton AB, Billingsley KJ | medRxiv : the preprint server for health sciences | 40166539 | medRxiv | 2025 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/40166539 |
| Deep Intronic SVA_E Insertion Identified as the Most Common Pathogenic Variant Associated With Canavan Disease: A Diagnostic Blind Spot. | Dominguez Gonzalez CA, Bell KM, Rajagopalan R, de Silva MG, Lemes A, Zabala C, Pérez-Vidarte F, Cerisola A, Vossough A, Whitehead MT, Cunningham C, Brown NJ, Quin R, Simons C, Conway T, Uebergang E, Rius R, Kumaheri MA, Kotes ER, Vohra A, Zalusky MPG, Anderson ZB, Storz SHR, Ward SA, Goffena J, Gustafson JA, White SM, Vanderver A, Miller DE | Neurology. Genetics | 40995055 | Neurol Genet | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40995055 |
| needLR: Long-read structural variant annotation with population-scale frequency estimation. | Gustafson JA, Lin J, Eichler EE, Miller DE | ArXiv | 41415608 | ArXiv | 2025 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/41415608 |
| A distant global control region is essential for normal expression of anterior HOXA genes during mouse and human craniofacial development. | Wilderman A, D'haene E, Baetens M, Yankee TN, Winchester EW, Glidden N, Roets E, Van Dorpe J, Janssens S, Miller DE, Galey M, Brown KM, Stottmann RW, Vergult S, Weaver KN, Brugmann SA, Cox TC, Cotney J | Nature communications | 38167838 | Nat Commun | 2024 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/38167838 |
| Advances in the discovery and analyses of human tandem repeats. | Chaisson MJP, Sulovari A, Valdmanis PN, Miller DE, Eichler EE | Emerging topics in life sciences | 37905568 | Emerg Top Life Sci | 2023 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/37905568 |
| Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson Z, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | medRxiv : the preprint server for health sciences | 38496498 | medRxiv | 2024 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/38496498 |
| Beyond the exome: what's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | ArXiv | 36713248 | ArXiv | 2023 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/36713248 |
| Congenital pleuropulmonary blastoma in a newborn with a variant of uncertain significance in DICER1 evaluated by RNA-sequencing. | Lyle ANJ, Ohlsen TJD, Miller DE, Brown G, Waligorski N, Stark R, Taylor MR, Puia-Dumitrescu M | Maternal health, neonatology and perinatology | 36922881 | Matern Health Neonatol Perinatol | 2023 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/36922881 |
| Genetic and epigenetic contributors and mimickers of phenotypic hypoxic-ischemic encephalopathy (HIE). | Mietzsch U, Law JB, Thayyil B, Miller DE, Wood TR, Natarajan N, Mohammad K | Seminars in perinatology | 40603154 | Semin Perinatol | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/40603154 |
| Pangenome discovery of missing autism variants. | Sui Y, Lin J, Noyes MD, Kwon Y, Wong I, Koundinya N, Harvey WT, Wu M, Hoekzema K, Munson KM, Garcia GH, Knuth J, Wertz J, Wang T, Hennick K, Karunakaran D, Polo Prieto RA, Meyer-Schuman R, Cherry F, Pehlivan D, Suter B, Gustafson JA, Miller DE, Human Pangenome Reference Consortium (HPRC), Berk-Rauch H, Nowakowski TJ, Chakravarti A, Zoghbi HY, Eichler EE | medRxiv : the preprint server for health sciences | 40778144 | medRxiv | 2025 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/40778144 |
| Heterozygous inversion breakpoints suppress meiotic crossovers by altering recombination repair outcomes. | Li H, Berent E, Hadjipanteli S, Galey M, Muhammad-Lahbabi N, Miller DE, Crown KN | PLoS genetics | 37053290 | PLoS Genet | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37053290 |
| 3-hour genome sequencing and targeted analysis to rapidly assess genetic risk. | Zalusky MP, Gustafson JA, Bohaczuk SC, Mallory B, Reed P, Wenger T, Beckman E, Chang IJ, Paschal CR, Buchan JG, Lockwood CM, Puia-Dumitrescu M, Garalde DR, Guillory J, Markham AJ, Bamshad MJ, Eichler EE, Stergachis AB, Miller DE | Genetics in medicine open | 39421454 | Genet Med Open | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39421454 |
| Antisense oligonucleotides to KIF1A polymorphisms expand targets and rescue patient-derived neurons in vitro. | Zuccaro MV, Young RE, Hu J, Lanzano P, Semenova E, Lin X, Skowronski A, Shen Y, Kim TH, Miller DE, Germain N, Sarmiere P, LeDuc CA, Chung WK | Nature communications | 41513671 | Nat Commun | 2026 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/41513671 |
| CFAP47 is a novel causative gene implicated in X-linked polycystic kidney disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MP, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | medRxiv : the preprint server for health sciences | 38633811 | medRxiv | 2024 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/38633811 |
| Long-read DNA sequencing resolves a rare case of alloimmune hemolysis mimicking autoimmune hemolysis. | Chao HX, Ma T, Hegerova L, Nester T, Sen N, Er L, Harris S, Lockwood T, Buchan JG, Lannert KW, Gasper J, Goffena J, Zalusky MPG, Storz SHR, Montemayor-Garcia C, Pagano MB, Johnsen JM, Panch SR, Miller DE | Transfusion | 40959943 | Transfusion | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40959943 |
| CFAP47 is Implicated in X-Linked Polycystic Kidney Disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MPG, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | Kidney international reports | 39698362 | Kidney Int Rep | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39698362 |
| Applications of long-read sequencing to Mendelian genetics. | Mastrorosa FK, Miller DE, Eichler EE | Genome medicine | 37316925 | Genome Med | 2023 Jun 14 | https://www.ncbi.nlm.nih.gov/pubmed/37316925 |
| GENOME REPORT: Chromosome-scale genome assembly of the African spiny mouse ( Acomys cahirinus ). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | bioRxiv : the preprint server for biology | 37066261 | bioRxiv | 2023 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/37066261 |
| Beyond the exome: What's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | American journal of human genetics | 37541186 | Am J Hum Genet | 2023 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/37541186 |
| Long-Read DNA and RNA Sequencing to Streamline Clinical Genetic Testing and Reduce Barriers to Comprehensive Genetic Testing. | Damaraju N, Miller AL, Miller DE | The journal of applied laboratory medicine | 38167773 | J Appl Lab Med | 2024 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/38167773 |
| Anti-uPAR CAR T cells reverse and prevent aging-associated defects in intestinal regeneration and fitness. | Eskiocak O, Gewolb J, Shah V, Rouse JA, Chowdhury S, Akyildiz EO, Fernández-Maestre I, Boyer JA, Filliol A, Harris AS, Utama R, Guo G, Castro-Hernández C, Nnuji-John E, Chung C, Anderson A, Flowers S, Habel J, Romesser PB, Levine RL, Lowe SW, Sadelain M, Beyaz S, Amor C | Nature aging | 41291258 | Nat Aging | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41291258 |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Nature aging | 38267706 | Nat Aging | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38267706 |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Research square | 37841853 | Res Sq | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37841853 |
| Senolytic CAR T cells reverse aging-associated defects in intestinal regeneration and fitness. | Eskiocak O, Chowdhury S, Shah V, Nnuji-John E, Chung C, Boyer JA, Harris AS, Habel J, Sadelain M, Beyaz S, Amor C | bioRxiv : the preprint server for biology | 38529506 | bioRxiv | 2024 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/38529506 |
| Aging and immunity: the age-old tango. | Fernández Maestre I, Harris AS, Amor C | Genes & development | 40436627 | Genes Dev | 2025 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/40436627 |
| Phenotypes and ontogeny of senescent hepatic stellate cells in metabolic dysfunction-associated steatohepatitis. | Yashaswini CN, Qin T, Bhattacharya D, Amor C, Lowe S, Lujambio A, Wang S, Friedman SL | Journal of hepatology | 38508241 | J Hepatol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38508241 |
| MERFISH+, a large-scale, multi-omics spatial technology resolves the molecular holograms of the 3D human developing heart. | Kern C, Zhang Q, Lu Y, Eschbach J, Zeng Z, Farah EN, Tai CY, Yang K, Jenie I, Yao F, Zhao Z, Ma Q, Padilla CG, Monell A, Moghadami S, Zhu F, Li B, Hou A, Tucker G, Ellison D, Chi NC, Qiu X, Zhu Q, Bintu B | bioRxiv : the preprint server for biology | 41279640 | bioRxiv | 2025 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/41279640 |
| Temporally distinct 3D multi-omic dynamics in the developing human brain. | Heffel MG, Zhou J, Zhang Y, Lee DS, Hou K, Pastor-Alonso O, Abuhanna KD, Galasso J, Kern C, Tai CY, Garcia-Padilla C, Nafisi M, Zhou Y, Schmitt AD, Li T, Haeussler M, Wick B, Zhang MJ, Xie F, Ziffra RS, Mukamel EA, Eskin E, Nowakowski TJ, Dixon JR, Pasaniuc B, Ecker JR, Zhu Q, Bintu B, Paredes MF, Luo C | Nature | 39385032 | Nature | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39385032 |
| Spatially clustered type I interferon responses at injury borderzones. | Ninh VK, Calcagno DM, Yu JD, Zhang B, Taghdiri N, Sehgal R, Mesfin JM, Chen CJ, Kalhor K, Toomu A, Duran JM, Adler E, Hu J, Zhang K, Christman KL, Fu Z, Bintu B, King KR | Nature | 39198639 | Nature | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39198639 |
| A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons. | Heffel MG, Xu H, Pastor-Alonso O, Li X, Baig MS, Irfan Ghoor R, Li R, Kern C, Kum J, Zhang Y, Paino J, Tsai MJ, Tai CY, Tucker G, Zhao Z, Hou A, von Behren Z, Bhade M, Li S, Sandoval K, Scholes J, Codrea F, Calimlim J, Liao EK, Leung G, Kim J, Eskin E, Flint J, Cotter JA, Pasaniuc B, Bintu B, Zhu Q, Mukamel EA, Ernst J, Paredes MF, Luo C | bioRxiv : the preprint server for biology | 41659519 | bioRxiv | 2026 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/41659519 |
| Prophylactic feeding tube placement for squamous cell carcinoma of the head and neck. | Kao DD, Ferrandino RM, Bauml JM, Marshall DC, Bakst R, Roof S, Park YA, Sigel KM | Oral oncology | 36326521 | Oral Oncol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36326521 |
| Evaluation of AI-based auto-contouring tools in radiotherapy: A single-institution study. | Wang T, Tam J, Chum T, Tai C, Marshall DC, Buckstein M, Liu J, Green S, Stewart RD, Liu T, Chao M | Journal of applied clinical medical physics | 39837647 | J Appl Clin Med Phys | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39837647 |
| Sex-Based Bias in Artificial Intelligence-Based Segmentation Models in Clinical Oncology. | Doo FX, Naranjo WG, Kapouranis T, Thor M, Chao M, Yang X, Marshall DC | Clinical oncology (Royal College of Radiologists (Great Britain)) | 39874747 | Clin Oncol (R Coll Radiol) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39874747 |
| Breast and Pelvic Cancer Survivors' Preferences for Psychosexual Interventions to Address Sexual Health Concerns: A Qualitative Study. | Carney LM, Besculides M, Gorbenko K, Schnur JB, Munoz C, Lynch J, Feldman C, Montgomery GH, Gupta V, Green S, Ghiassi-Nejad Z, Goodman KA, Marshall DC | Psycho-oncology | 40500244 | Psychooncology | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40500244 |
| Dose and fractionation regimen for brachytherapy boost in cervical cancer in the US. | Hsieh K, Bloom JR, Dickstein DR, Hsieh C, Marshall D, Ghiassi-Nejad Z, Raince J, Lymberis S, Chadha M, Gupta V | Gynecologic oncology | 38052109 | Gynecol Oncol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38052109 |
| Neutrophil-to-lymphocyte ratio as a predictor of surgical outcomes in head and neck cancer. | Kao DD, Ferrandino RM, Roof SA, Marshall DC, Khan MN, Chai RL, Park YA, Sigel KM | Head & neck | 37204760 | Head Neck | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37204760 |
| Associations between pharmaceutical industry payments to physicians and prescription of PARP inhibitors in the United States. | Murayama A, Marshall DC | Gynecologic oncology | 38147713 | Gynecol Oncol | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38147713 |
| Cuban American Perspectives on Sexual Dysfunction Following Pelvic Radiotherapy: A Qualitative Study. | Duenas-Lopez M, Morgan O, Marshall DC, Carney L, Caban-Martinez A, Huang M, Portelance L, Schnur J | Sexuality and disability | 38948491 | Sex Disabil | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38948491 |
| Sexual function in chronic illness and cancer perspectives of the patient, partner, and healthcare provider; innovations; and updates: recommendations from the Fifth International Consultation on Sexual Medicine (ICSM 2024). | Wylie KR, Kirby MG, Nimbi FM, Krychman M, Reese JB, Marshall DC | Sexual medicine reviews | 41729785 | Sex Med Rev | 2026 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/41729785 |
| Effects of trauma history on cancer-related screening, diagnosis, and treatment. | Marshall DC, Carney LM, Hsieh K, Dickstein DR, Downes M, Chaudhari A, McVorran S, Montgomery GH, Schnur JB | The Lancet. Oncology | 37922933 | Lancet Oncol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37922933 |
| Female erectile tissues and sexual dysfunction after pelvic radiotherapy: A scoping review. | Marshall DC, Tarras ES, Ali A, Bloom J, Torres MA, Kahn JM | CA: a cancer journal for clinicians | 35298025 | CA Cancer J Clin | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35298025 |
| Gender-Affirming Surgery and Cancer: Considerations for Radiation Oncologists for Pelvic Radiation in Transfeminine Patients. | Smart AC, Liu KX, Domogauer JD, Rodriguez-Russo C, Jones B, Dickstein DR, Mancias JD, Shiloh RY, Wintner A, Zietman AL, Marshall DC, Dyer MA, Russo AL | International journal of radiation oncology, biology, physics | 37230432 | Int J Radiat Oncol Biol Phys | 2023 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/37230432 |
| Systematic Review of Comparisons Between Plastic and Silicone Dilators: Revealing a Knowledge Gap. | Morgan O, Lopez MD, Caban Martinez AJ, Marshall DC, Schnur JB | Sexual medicine reviews | 36030181 | Sex Med Rev | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36030181 |
| Sexual activity and functioning after breast cancer treatment: perspectives on the importance of pleasure from a radiotherapy cohort. | Besculides M, Carney L, Gorbenko K, Green S, Brito M, Lynch J, Feldman C, Munoz C, Mazumdar M, Marshall DC | BMC women's health | 41162938 | BMC Womens Health | 2025 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/41162938 |
| Motivators for sexual activity among women who are cancer survivors: a cross-sectional study. | Besculides M, Brody-Barre J, Carney LM, Waeldner K, Kapouranis T, Downes M, Greenwald L, Gupta V, Buckstein M, Green S, Goodman K, Dutta P, Saitta A, Marshall DC | The journal of sexual medicine | 41168467 | J Sex Med | 2026 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/41168467 |
| A qualitative analysis of female patient perspectives on physician communication regarding sexual dysfunction associated with pelvic radiotherapy. | Morgan O, Schnur J, Caban-Martinez AJ, Duenas-Lopez M, Huang M, Portelance L, Elkhadem A, Marshall DC | The journal of sexual medicine | 37037772 | J Sex Med | 2023 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/37037772 |
| Association between rheumatoid arthritis and risk of radiotherapy toxicity: a systematic review. | Liebenberg N, McWilliam A, Kerns SL, Marshall DC, West CM | BMJ oncology | 39524982 | BMJ Oncol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39524982 |
| Advancing the evaluation of radiation-induced vaginal toxicity using ultrasound radiomics: Phantom validation and pilot clinical study. | Wang J, Shelton J, Zhou B, Marshall DC, Joshi H, Yoshida EJ, Yang X, Liu T | Medical physics | 40344179 | Med Phys | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40344179 |
| Trauma-Informed Radiation Therapy: Implementation and Evaluation of a Sensitive Practice Tool for Female Patients Undergoing Radiotherapy for Breast Cancer. | Marshall D, Green S, Jones BM, Starrs C, Montgomery GH, Minassian K, Wunder B, Force J, Schnur JB | Journal of the American College of Radiology : JACR | 36126825 | J Am Coll Radiol | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36126825 |
| Industry-Sponsored Research Funding to Urologists in the United States Between 2014 and 2022. | Murayama A, Nguyen DD, Nguyen AV, Murad L, Cheng A, Elterman DS, Kulkarni GS, Bhojani N, Satkunasivam R, Trinh QD, Marshall DC, Wallis CJD | Urology practice | 39454021 | Urol Pract | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39454021 |
| Pharmaceutical industry payments and prescriptions of direct acting antiviral drugs for hepatitis C virus infection. | Murayama A, Sigel KM, Tarras ES, Marshall DC | Liver international : official journal of the International Association for the Study of the Liver | 39310996 | Liver Int | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39310996 |
| Association of radiation-induced normal tissue toxicity with a high genetic risk for rheumatoid arthritis. | McWilliam A, Marshall D, Kerns SL, Barnett GC, Vega A, Kapouranis T, Aguado Barrera ME, Avuzzi B, Azria D, Chang-Claude J, Choudhury A, Coedo Costa C, Dunning A, Farcy-Jacquet MP, Faivre-Finn C, Gutiérrez-Enríquez S, Fuentes-Ríos O, Gómez Caamaño A, Lambrecht M, López Pleguezuelos C, Rancati T, Rattay T, de Ruysscher D, Seibold P, Sperk E, Talbot C, Webb A, Veldeman L, Rosenstein BS, West CML, REQUITE Consortium | Journal of the National Cancer Institute | 39761002 | J Natl Cancer Inst | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/39761002 |
| Effect of treatment interruptions on overall survival in patients with triple-negative breast cancer. | Chow R, Hasan S, Choi JI, Fox J, Chhabra AM, Marshall DC, Bakst RL, Simone CB 2nd | Journal of the National Cancer Institute | 37399094 | J Natl Cancer Inst | 2023 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/37399094 |
| Sexual health and treatment-related sexual dysfunction in sexual and gender minorities with prostate cancer. | Dickstein DR, Edwards CR, Lehrer EJ, Tarras ES, Gallitto M, Sfakianos J, Galsky MD, Stock R, Safer JD, Rosser BRS, Marshall DC | Nature reviews. Urology | 37217695 | Nat Rev Urol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37217695 |
| Getting c-literate: Bulboclitoris functional anatomy and its implications for radiotherapy. | Greenwald LM, Williams A, Downes MH, Reidenberg JS, Collins V, Bane O, Bowen S, Okorom A, Dickstein DR, Garcia-Barros M, Brody R, Hannan JL, Thor M, Lymberis S, Hindman N, Chubak B, Marshall DC | Practical radiation oncology | 41569221 | Pract Radiat Oncol | 2026 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/41569221 |
| Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State. | Pitter KL, Grbovic-Huezo O, Joost S, Singhal A, Blum M, Wu K, Holm M, Ferrena A, Bhutkar A, Hudson A, Lecomte N, de Stanchina E, Chaligne R, Iacobuzio-Donahue CA, Pe'er D, Tammela T | Cancer research | 35952360 | Cancer Res | 2022 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/35952360 |
| Chemical inhibition of DNA-PKcs impairs the activation and cytotoxicity of CD4(+) helper and CD8(+) effector T cells. | Azevedo-Pouly AC, Appell LE, Burdine L, Rogers LJ, Morehead LC, Fil D, Barker M, Rainwater RR, Waldrip ZJ, Koss B, Burdine MS | Immunology and cell biology | 37149747 | Immunol Cell Biol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37149747 |
| Resveratrol induces major histocompatibility complex class I antigen presentation in a STING-dependent and independent manner in melanoma. | Morehead LC, Koss B, Fil D, Heflin B, Garg S, Wallis KF, Tackett AJ, Miousse IR | Molecular immunology | 37837954 | Mol Immunol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37837954 |
| Enhancer-activated RET confers protection against oxidative stress to KMT2A-rearranged acute myeloid leukemia. | Frett B, Stephens KE, Koss B, Melnyk S, Farrar J, Saha D, Roy Choudhury S | Cancer science | 38226414 | Cancer Sci | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38226414 |
| CAR-T Therapies in Solid Tumors: Opportunities and Challenges. | Guzman G, Reed MR, Bielamowicz K, Koss B, Rodriguez A | Current oncology reports | 36853475 | Curr Oncol Rep | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36853475 |
| EZH2 loss during metabolic stress drives restoration of MHC class I machinery in melanoma. | Edmondson JL, Reed MR, Fil D, Heflin B, McKinnon A, Bauer MA, Morehead LC, Avaritt NL, Phillips M, Taverna SD, Tackett AJ, Koss B | iScience | 40546964 | iScience | 2025 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/40546964 |
| CRISPR/dCas9-KRAB-Mediated Suppression of S100b Restores p53-Mediated Apoptosis in Melanoma Cells. | Roy Choudhury S, Heflin B, Taylor E, Koss B, Avaritt NL, Tackett AJ | Cells | 36899866 | Cells | 2023 Feb 24 | https://www.ncbi.nlm.nih.gov/pubmed/36899866 |
| Evolved histone tail regulates 53BP1 recruitment at damaged chromatin. | Kelliher JL, Folkerts ML, Shen KV, Song W, Tengler K, Stiefel CM, Lee SO, Dray E, Zhao W, Koss B, Pannunzio NR, Leung JW | Nature communications | 38821984 | Nat Commun | 2024 May 31 | https://www.ncbi.nlm.nih.gov/pubmed/38821984 |
| Portraying emotions at their unfolding: a multilayered approach for probing dynamics of neural networks. | Raz G, Winetraub Y, Jacob Y, Kinreich S, Maron-Katz A, Shaham G, Podlipsky I, Gilam G, Soreq E, Hendler T | NeuroImage | 22285693 | Neuroimage | 2012 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/22285693 |
| Synchrony and specificity in the maternal and the paternal brain: relations to oxytocin and vasopressin. | Atzil S, Hendler T, Zagoory-Sharon O, Winetraub Y, Feldman R | Journal of the American Academy of Child and Adolescent Psychiatry | 22840551 | J Am Acad Child Adolesc Psychiatry | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22840551 |
| Intravital 3D visualization and segmentation of murine neural networks at micron resolution. | Lautman Z, Winetraub Y, Blacher E, Yu C, Terem I, Chibukhchyan A, Marshel JH, de la Zerda A | Scientific reports | 35907928 | Sci Rep | 2022 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/35907928 |
| Noninvasive virtual biopsy using micro-registered optical coherence tomography (OCT) in human subjects. | Winetraub Y, Van Vleck A, Yuan E, Terem I, Zhao J, Yu C, Chan W, Do H, Shevidi S, Mao M, Yu J, Hong M, Blankenberg E, Rieger KE, Chu S, Aasi S, Sarin KY, de la Zerda A | Science advances | 38598626 | Sci Adv | 2024 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/38598626 |
| Real-Time Detection of Circulating Tumor Cells in Living Animals Using Functionalized Large Gold Nanorods. | Dutta R, Liba O, SoRelle ED, Winetraub Y, Ramani VC, Jeffrey SS, Sledge GW, de la Zerda A | Nano letters | 30895796 | Nano Lett | 2019 Apr 10 | https://www.ncbi.nlm.nih.gov/pubmed/30895796 |
| In Vivo Molecular Optical Coherence Tomography of Lymphatic Vessel Endothelial Hyaluronan Receptors. | Si P, Sen D, Dutta R, Yousefi S, Dalal R, Winetraub Y, Liba O, de la Zerda A | Scientific reports | 28439123 | Sci Rep | 2017 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/28439123 |
| Gold Nanoprisms as Optical Coherence Tomography Contrast Agents in the Second Near-Infrared Window for Enhanced Angiography in Live Animals. | Si P, Yuan E, Liba O, Winetraub Y, Yousefi S, SoRelle ED, Yecies DW, Dutta R, de la Zerda A | ACS nano | 30422624 | ACS Nano | 2018 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/30422624 |
| Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. | Huang SY, Witzel T, Keil B, Scholz A, Davids M, Dietz P, Rummert E, Ramb R, Kirsch JE, Yendiki A, Fan Q, Tian Q, Ramos-Llordén G, Lee HH, Nummenmaa A, Bilgic B, Setsompop K, Wang F, Avram AV, Komlosh M, Benjamini D, Magdoom KN, Pathak S, Schneider W, Novikov DS, Fieremans E, Tounekti S, Mekkaoui C, Augustinack J, Berger D, Shapson-Coe A, Lichtman J, Basser PJ, Wald LL, Rosen BR | NeuroImage | 34464739 | Neuroimage | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34464739 |
| The influence of axonal beading and undulation on axonal diameter mapping. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | bioRxiv : the preprint server for biology | 37131702 | bioRxiv | 2023 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/37131702 |
| Scattering approach to diffusion quantifies axonal damage in brain injury. | Abdollahzadeh A, Coronado-Leija R, Lee HH, Sierra A, Fieremans E, Novikov DS | Nature communications | 41198676 | Nat Commun | 2025 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/41198676 |
| What If Each Voxel Were Measured With a Different Diffusion Protocol? | Coelho S, Lemberskiy G, Zhu A, Lee HH, Abad N, Foo TKF, Fieremans E, Novikov DS | Magnetic resonance in medicine | 41387990 | Magn Reson Med | 2026 Apr | https://www.ncbi.nlm.nih.gov/pubmed/41387990 |
| Longitudinal changes in cortical cell body and neurite density in people with multiple sclerosis. | Krijnen EA, Lee H, Ma Y, Lee HH, Schoonheim MM, Klawiter EC, Huang SY | Neuroscience | 40691883 | Neuroscience | 2025 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/40691883 |
| Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. | Fan Q, Eichner C, Afzali M, Mueller L, Tax CMW, Davids M, Mahmutovic M, Keil B, Bilgic B, Setsompop K, Lee HH, Tian Q, Maffei C, Ramos-Llordén G, Nummenmaa A, Witzel T, Yendiki A, Song YQ, Huang CC, Lin CP, Weiskopf N, Anwander A, Jones DK, Rosen BR, Wald LL, Huang SY | NeuroImage | 35217204 | Neuroimage | 2022 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/35217204 |
| Eddy current-induced artifact correction in high b-value ex vivo human brain diffusion MRI with dynamic field monitoring. | Ramos-Llordén G, Park DJ, Kirsch JE, Scholz A, Keil B, Maffei C, Lee HH, Bilgic B, Edlow BL, Mekkaoui C, Yendiki A, Witzel T, Huang SY | Magnetic resonance in medicine | 37753621 | Magn Reson Med | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37753621 |
| In vivo cortical microstructure mapping using high-gradient diffusion MRI accounting for intercompartmental water exchange effects. | Dong T, Lee HH, Zang H, Lee H, Tian Q, Wan L, Fan Q, Huang S | NeuroImage | 40349743 | Neuroimage | 2025 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/40349743 |
| Quantifying axonal features of human superficial white matter from three-dimensional multibeam serial electron microscopy data assisted by deep learning. | Tian Q, Ngamsombat C, Lee HH, Berger DR, Wu Y, Fan Q, Bilgic B, Li Z, Novikov DS, Fieremans E, Rosen BR, Lichtman JW, Huang SY | NeuroImage | 40222502 | Neuroimage | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40222502 |
| Romer-EPTI: rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale dMRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | bioRxiv : the preprint server for biology | 38352481 | bioRxiv | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38352481 |
| Revealing membrane integrity and cell size from diffusion kurtosis time dependence. | Lee HH, Novikov DS, Fieremans E, Huang SY | Magnetic resonance in medicine | 39473219 | Magn Reson Med | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39473219 |
| DIMOND: DIffusion Model OptimizatioN with Deep Learning. | Li Z, Li Z, Bilgic B, Lee HH, Ying K, Huang SY, Liao H, Tian Q | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 38634608 | Adv Sci (Weinh) | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38634608 |
| Scattering approach to diffusion quantifies axonal damage in brain injury. | Abdollahzadeh A, Coronado-Leija R, Lee HH, Sierra A, Fieremans E, Novikov DS | ArXiv | 39975429 | ArXiv | 2025 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/39975429 |
| Ultra-high gradient connectomics and microstructure MRI scanner for imaging of human brain circuits across scales. | Ramos-Llordén G, Lee HH, Davids M, Dietz P, Krug A, Kirsch JE, Mahmutovic M, Müller A, Ma Y, Lee H, Maffei C, Yendiki A, Bilgic B, Park DJ, Tian Q, Clifford B, Lo WC, Stocker S, Fischer J, Ruyters G, Roesler M, Potthast A, Benner T, Rummert E, Schuster R, Basser PJ, Witzel T, Wald LL, Rosen BR, Keil B, Huang SY | Nature biomedical engineering | 40670720 | Nat Biomed Eng | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40670720 |
| Visualizing cortical laminar architecture in the living human brain using next-generation ultra-high-gradient diffusion MRI. | Huang S, Lee H, Ma Y, Chan KS, Krijnen E, Eskandarian L, Bhatt A, Gerold J, Mahmutovic M, Puonti O, Zeng X, Binder LJD, Fischl B, Keil B, Ramos-Llordén G, Klawiter E, Lee HH | Research square | 40585214 | Res Sq | 2025 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/40585214 |
| Distinct cellular processes drive motor skill learning in the human brain. | Griffa G, Palombo M, Yeffal A, Lee HH, Huang SY, Della-Maggiore V | bioRxiv : the preprint server for biology | 41040166 | bioRxiv | 2025 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/41040166 |
| GACELLE: GPU-accelerated tools for model parameter estimation and image reconstruction. | Chan KS, Lee H, Ma Y, Bilgic B, Huang SY, Lee HH, Marques JP | ArXiv | 41356069 | ArXiv | 2025 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/41356069 |
| High-fidelity, high-spatial-resolution diffusion magnetic resonance imaging of ex vivo whole human brain at ultra-high gradient strength with structured low-rank echo-planar imaging ghost correction. | Ramos-Llordén G, Lobos RA, Kim TH, Tian Q, Witzel T, Lee HH, Scholz A, Keil B, Yendiki A, Bilgiç B, Haldar JP, Huang SY | NMR in biomedicine | 36106429 | NMR Biomed | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36106429 |
| Perivascular space diffusivity and brain microstructural measures are associated with circadian time and sleep quality. | Brendstrup-Brix K, Ulv Larsen SM, Lee HH, Knudsen GM | Journal of sleep research | 38676409 | J Sleep Res | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38676409 |
| In vivo human neurite exchange imaging (NEXI) at 500 mT/m diffusion gradients. | Chan KS, Ma Y, Lee H, Marques JP, Olesen J, Coelho S, Novikov DS, Jespersen S, Huang SY, Lee HH | bioRxiv : the preprint server for biology | 39763747 | bioRxiv | 2024 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/39763747 |
| Age-related alterations in human cortical microstructure across the lifespan: Insights from high-gradient diffusion MRI. | Lee H, Lee HH, Ma Y, Eskandarian L, Gaudet K, Tian Q, Krijnen EA, Russo AW, Salat DH, Klawiter EC, Huang SY | Aging cell | 39118344 | Aging Cell | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39118344 |
| Complementary Sensitivity of Fixed-Time and Fixed-Oscillation Regimes to Exchange and Structural Disorder in the Human Brain Revealed Using Oscillating-Gradient Diffusion MRI With Ultra-Strong Gradients. | Sung D, Chan KS, Gerold J, Zhong W, Zheng J, Tian Q, Guo H, Huang SY, Lee HH | Magnetic resonance in medicine | 41692595 | Magn Reson Med | 2026 Jun | https://www.ncbi.nlm.nih.gov/pubmed/41692595 |
| In vivo human neurite exchange time imaging at 500 mT/m diffusion gradients: Neurite exchange time imaging on Connectome 2.0. | Chan KS, Ma Y, Lee H, Marques JP, Olesen JL, Coelho S, Novikov DS, Jespersen SN, Huang SY, Lee HH | Imaging neuroscience (Cambridge, Mass.) | 40726825 | Imaging Neurosci (Camb) | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40726825 |
| Age-Related Alterations in Hippocampal Microstructure Quantified Using High-Gradient Diffusion MRI (dMRI) in an Unfolded Hippocampal Space. | Ma Y, Lee H, Chan KS, Eskandarian L, Gaudet K, Tian Q, Bhatt A, Gerold J, Russo AW, Salat DH, Klawiter EC, Huang SY, Lee HH | Aging cell | 41194528 | Aging Cell | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41194528 |
| Romer-EPTI: Rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale diffusion MRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | Magnetic resonance in medicine | 39552568 | Magn Reson Med | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39552568 |
| The effects of axonal beading and undulation on axonal diameter estimation from diffusion MRI: Insights from simulations in human axons segmented from three-dimensional electron microscopy. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | NMR in biomedicine | 38168082 | NMR Biomed | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38168082 |
| In vivo mapping of cellular resolution neuropathology in brain ischemia with diffusion MRI. | Wu D, Lee HH, Ba R, Turnbill V, Wang X, Luo Y, Walczak P, Fieremans E, Novikov DS, Martin LJ, Northington FJ, Zhang J | Science advances | 39018390 | Sci Adv | 2024 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/39018390 |
| Drinking water arsenic, urinary arsenic biomarkers, and cognitive impairment in the REGARDS study. | Angley M, Zhang Y, Nigra AE, Lombard MA, Gribble MO, Lu L, Unverzagt FW, McClure LA, Judd SE, Cushman M, Brockman J, Kahe K | Environmental research | 41534586 | Environ Res | 2026 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/41534586 |
| Sociodemographic inequalities in uranium and other metals in community water systems across the USA, 2006-11: a cross-sectional study. | Ravalli F, Yu Y, Bostick BC, Chillrud SN, Schilling K, Basu A, Navas-Acien A, Nigra AE | The Lancet. Planetary health | 35397220 | Lancet Planet Health | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35397220 |
| Contribution of arsenic and uranium in private wells and community water systems to urinary biomarkers in US adults: The Strong Heart Study and the Multi-Ethnic Study of Atherosclerosis. | Spaur M, Glabonjat RA, Schilling K, Lombard MA, Galvez-Fernandez M, Lieberman-Cribbin W, Hayek C, Ilievski V, Balac O, Izuchukwu C, Patterson K, Basu A, Bostick BC, Chen Q, Sanchez T, Navas-Acien A, Nigra AE | Journal of exposure science & environmental epidemiology | 37558699 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37558699 |
| Cross-sectional associations between drinking water arsenic and urinary inorganic arsenic in the United States: NHANES 2003-2014. | Spaur M, Lombard MA, Ayotte JD, Bostick BC, Chillrud SN, Navas-Acien A, Nigra AE | Environmental research | 36963713 | Environ Res | 2023 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/36963713 |
| Association of Water Arsenic With Incident Diabetes in U.S. Adults: The Multi-Ethnic Study of Atherosclerosis and the Strong Heart Study. | Spaur M, Galvez-Fernandez M, Chen Q, Lombard MA, Bostick BC, Factor-Litvak P, Fretts AM, Shea SJ, Navas-Acien A, Nigra AE | Diabetes care | 38656975 | Diabetes Care | 2024 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/38656975 |
| Nationwide geospatial analysis of county racial and ethnic composition and public drinking water arsenic and uranium. | Martinez-Morata I, Bostick BC, Conroy-Ben O, Duncan DT, Jones MR, Spaur M, Patterson KP, Prins SJ, Navas-Acien A, Nigra AE | Nature communications | 36460659 | Nat Commun | 2022 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/36460659 |
| Regional and racial/ethnic inequalities in public drinking water fluoride concentrations across the US. | Hefferon R, Goin DE, Sarnat JA, Nigra AE | Journal of exposure science & environmental epidemiology | 37391608 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37391608 |
| Public Water Arsenic and Birth Outcomes in the Environmental Influences on Child Health Outcomes Cohort. | Nigra AE, Bloomquist TR, Rajeev T, Burjak M, Casey JA, Goin DE, Herbstman JB, Ornelas Van Horne Y, Wylie BJ, Cerna-Turoff I, Braun JM, McArthur KL, Karagas MR, Ames JL, Sherris AR, Bulka CM, Padula AM, Howe CG, Fry RC, Eaves LA, Breton CV, Cassidy-Bushrow AE, Lewis J, MacKenzie D, Beene D, Farzan SF, Sathyanarayana S, Hipwell AE, Morello-Frosch R, Snyder BM, Hartert TV, Elliott AJ, O'Connor TG, Kress AM, ECHO Cohort Consortium | JAMA network open | 40522663 | JAMA Netw Open | 2025 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/40522663 |
| Geospatial Assessment of Racial/Ethnic Composition, Social Vulnerability, and Lead Water Service Lines in New York City. | Nigra AE, Lieberman-Cribbin W, Bostick BC, Chillrud SN, Carrión D | Environmental health perspectives | 37646509 | Environ Health Perspect | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37646509 |
| Socioeconomic vulnerability and public water arsenic concentrations across the US. | Nigra AE, Cazacu-De Luca A, Navas-Acien A | Environmental pollution (Barking, Essex : 1987) | 36084737 | Environ Pollut | 2022 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/36084737 |
| Uranium exposure and kidney tubule biomarkers in the Multi-Ethnic Study of Atherosclerosis (MESA). | Anderson WA, Domingo-Relloso A, Galvez-Fernandez M, Schilling K, Glabonjat RA, Basu A, Nigra AE, Gutierrez OM, Scherzer R, Goldsmith J, Sarnak MJ, Bonventre JV, Kimmel PL, Vasan RS, Ix JH, Shlipak MG, Navas-Acien A | Environmental research | 39922262 | Environ Res | 2025 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/39922262 |
| Public drinking water contaminant estimates for birth cohorts in the Environmental Influences on Child Health Outcomes (ECHO) Cohort. | Bloomquist TR, Spaur M, Cerna-Turoff I, Kress AM, Burjak M, Kupsco A, Casey JA, Herbstman JB, Nigra AE | Journal of exposure science & environmental epidemiology | 39098852 | J Expo Sci Environ Epidemiol | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39098852 |
| Impact of lowering the US maximum contaminant level on arsenic exposure: Differences by race, region, and water arsenic in NHANES 2003-2014. | Spaur M, Bostick BC, Chillrud SN, Factor-Litvak P, Navas-Acien A, Nigra AE | Environmental pollution (Barking, Essex : 1987) | 37331581 | Environ Pollut | 2023 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/37331581 |
| US drinking water quality: exposure risk profiles for seven legacy and emerging contaminants. | Levin R, Villanueva CM, Beene D, Cradock AL, Donat-Vargas C, Lewis J, Martinez-Morata I, Minovi D, Nigra AE, Olson ED, Schaider LA, Ward MH, Deziel NC | Journal of exposure science & environmental epidemiology | 37739995 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37739995 |
| CAR-T cell therapy in brain malignancies: obstacles in the face of cellular trafficking and persistence. | Yaacoub S, Vannoy E, Maslova S, Haffey A, Khorsandi K, Sheybani N, Haydar D | Frontiers in immunology | 40612954 | Front Immunol | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40612954 |
| Barriers to immune cell infiltration in tumors. | Melssen MM, Sheybani ND, Leick KM, Slingluff CL Jr | Journal for immunotherapy of cancer | 37072352 | J Immunother Cancer | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37072352 |
| Profiling of the immune landscape in murine glioblastoma following blood brain/tumor barrier disruption with MR image-guided focused ultrasound. | Sheybani ND, Witter AR, Garrison WJ, Miller GW, Price RJ, Bullock TNJ | Journal of neuro-oncology | 34734364 | J Neurooncol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34734364 |
| MR Imaging-Guided Focused Ultrasound for Breast Tumors. | DeWitt M, Demir ZEF, Sherlock T, Brenin DR, Sheybani ND | Magnetic resonance imaging clinics of North America | 39322350 | Magn Reson Imaging Clin N Am | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39322350 |
| Therapeutic Ultrasound for Multimodal Cancer Treatment: A Spotlight on Breast Cancer. | Demir ZEF, Sheybani ND | Annual review of biomedical engineering | 39971377 | Annu Rev Biomed Eng | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/39971377 |
| Focused ultrasound for the treatment of glioblastoma. | Roberts JW, Powlovich L, Sheybani N, LeBlang S | Journal of neuro-oncology | 35267132 | J Neurooncol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35267132 |
| Letter to the editor regarding "Translation of focused ultrasound for blood-brain barrier opening in glioma". | Price RJ, Bullock TNJ, Sheybani ND | Journal of controlled release : official journal of the Controlled Release Society | 35780955 | J Control Release | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35780955 |
| Applications of focused ultrasound-mediated blood-brain barrier opening. | Gorick CM, Breza VR, Nowak KM, Cheng VWT, Fisher DG, Debski AC, Hoch MR, Demir ZEF, Tran NM, Schwartz MR, Sheybani ND, Price RJ | Advanced drug delivery reviews | 36272635 | Adv Drug Deliv Rev | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36272635 |
| Solid Tumor Treatment via Augmentation of Bioactive C6 Ceramide Levels with Thermally Ablative Focused Ultrasound. | Thim EA, Fox T, Deering T, Vass LR, Sheybani ND, Kester M, Price RJ | bioRxiv : the preprint server for biology | 36993445 | bioRxiv | 2023 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/36993445 |
| Rapid Interactions of Widespread Brain Networks Characterize Semantic Cognition. | Aboud KS, Nguyen TQ, Del Tufo SN, Chang C, Zald DH, Key AP, Price GR, Landman BA, Cutting LE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 36384679 | J Neurosci | 2023 Jan 4 | https://www.ncbi.nlm.nih.gov/pubmed/36384679 |
| Regenerative Potential of Mandibular Condyle Cartilage and Bone Cells Compared to Costal Cartilage Cells When Seeded in Novel Gelatin Based Hydrogels. | Chin AR, Taboas JM, Almarza AJ | Annals of biomedical engineering | 33155145 | Ann Biomed Eng | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33155145 |
| Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants. | Fray EJ, Wu F, Simonetti FR, Zitzmann C, Sambaturu N, Molina-Paris C, Bender AM, Liu PT, Ventura JD, Wiseman RW, O'Connor DH, Geleziunas R, Leitner T, Ribeiro RM, Perelson AS, Barouch DH, Siliciano JD, Siliciano RF | Cell host & microbe | 36809762 | Cell Host Microbe | 2023 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/36809762 |
| Superinfection promotes replication and diversification of defective HIV-1 proviruses in people with non-suppressible viraemia. | Hariharan V, White JA, Dragoni F, Fray EJ, Pathoulas N, Moskovljevic M, Zhang H, Singhal A, Lai J, Beg SA, Scully EP, Gilliams EA, Block DS, Keruly J, Moore RD, Siliciano JD, Simonetti FR, Siliciano RF | Nature microbiology | 41044362 | Nat Microbiol | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/41044362 |
| Proviral location affects cognate peptide-induced virus production and immune recognition of HIV-1-infected T cell clones. | Dragoni F, Kwaa AK, Traut CC, Veenhuis RT, Woldemeskel BA, Camilo-Contreras A, Raymond HE, Dykema AG, Scully EP, Rosecrans AM, Smith KN, Bushman FD, Simonetti FR, Blankson JN | The Journal of clinical investigation | 37698927 | J Clin Invest | 2023 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/37698927 |
| Bispecific antibodies promote natural killer cell-mediated elimination of HIV-1 reservoir cells. | Board NL, Yuan Z, Wu F, Moskovljevic M, Ravi M, Sengupta S, Mun SS, Simonetti FR, Lai J, Tebas P, Lynn K, Hoh R, Deeks SG, Siliciano JD, Montaner LJ, Siliciano RF | Nature immunology | 38278966 | Nat Immunol | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38278966 |
| SIV proviruses seeded later in infection are harbored in short-lived CD4(+) T cells. | Sambaturu N, Fray EJ, Hariharan V, Wu F, Zitzmann C, Simonetti FR, Barouch DH, Siliciano JD, Siliciano RF, Ribeiro RM, Perelson AS, Molina-París C, Leitner T | Cell reports | 40327506 | Cell Rep | 2025 May 27 | https://www.ncbi.nlm.nih.gov/pubmed/40327506 |
| Cognate antigen engagement induces HIV-1 expression in latently infected CD4(+) T cells from people on long-term antiretroviral therapy. | Moskovljevic M, Dragoni F, Board NL, Wu F, Lai J, Zhang H, White JR, Hoh R, Lynn K, Tebas P, Mounzer K, Deeks SG, Montaner LJ, Siliciano JD, Siliciano RF, Simonetti FR | Immunity | 39612916 | Immunity | 2024 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/39612916 |
| Last in first out: SIV proviruses seeded later in infection are harbored in short-lived CD4(+) T cells. | Sambaturu N, Fray EJ, Wu F, Zitzmann C, Simonetti FR, Barouch DH, Siliciano JD, Siliciano RF, Ribeiro RM, Perelson AS, Molina-París C, Leitner T | bioRxiv : the preprint server for biology | 37961482 | bioRxiv | 2023 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/37961482 |
| Mild HIV-specific selective forces overlaying natural CD4+ T cell dynamics explain the clonality and decay dynamics of HIV reservoir cells. | Reeves DB, Rigau DN, Romero A, Zhang H, Simonetti FR, Varriale J, Hoh R, Zhang L, Smith KN, Montaner LJ, Rubin LH, Gange SJ, Roan NR, Tien PC, Margolick JB, Peluso MJ, Deeks SG, Schiffer JT, Siliciano JD, Siliciano RF, Antar AAR | Cell systems | 40987290 | Cell Syst | 2025 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/40987290 |
| Clonally expanded HIV-1 proviruses with 5'-leader defects can give rise to nonsuppressible residual viremia. | White JA, Wu F, Yasin S, Moskovljevic M, Varriale J, Dragoni F, Camilo-Contreras A, Duan J, Zheng MY, Tadzong NF, Patel HB, Quiambao JMC, Rhodehouse K, Zhang H, Lai J, Beg SA, Delannoy M, Kilcrease C, Hoffmann CJ, Poulin S, Chano F, Tremblay C, Cherian J, Barditch-Crovo P, Chida N, Moore RD, Summers MF, Siliciano RF, Siliciano JD, Simonetti FR | The Journal of clinical investigation | 36602866 | J Clin Invest | 2023 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/36602866 |
| Proviruses in CD4(+) T cells reactive to autologous antigens contribute to nonsuppressible HIV-1 viremia. | Wu F, Moskovljevic M, Dragoni F, Jayaraman S, Board NL, Camilo-Contreras A, Bernal S, Hariharan V, Zhang H, Lai J, Singhal A, Poulin S, Chano F, Chamberland A, Tremblay C, Zoltick M, Hoffmann CJ, Jones JL, Larman HB, Montaner LJ, Siliciano JD, Siliciano RF, Simonetti FR | Science translational medicine | 40802737 | Sci Transl Med | 2025 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/40802737 |
| Selective targeting of HIV-infected clones by cognate peptide stimulation and antiproliferative drugs. | Dragoni F, Sop J, Gurumurthy I, Beckey TP, Smith KN, Simonetti FR, Blankson JN | The Journal of clinical investigation | 41118390 | J Clin Invest | 2025 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/41118390 |
| The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy. | McMyn NF, Varriale J, Fray EJ, Zitzmann C, MacLeod H, Lai J, Singhal A, Moskovljevic M, Garcia MA, Lopez BM, Hariharan V, Rhodehouse K, Lynn K, Tebas P, Mounzer K, Montaner LJ, Benko E, Kovacs C, Hoh R, Simonetti FR, Laird GM, Deeks SG, Ribeiro RM, Perelson AS, Siliciano RF, Siliciano JM | The Journal of clinical investigation | 37463049 | J Clin Invest | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37463049 |
| Learning from Persistent Viremia: Mechanisms and Implications for Clinical Care and HIV-1 Cure. | Wu F, Simonetti FR | Current HIV/AIDS reports | 37955826 | Curr HIV/AIDS Rep | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37955826 |
| Long-term function, body composition and cardiometabolic health in midlife former athletes: a scoping review. | Street JH, Boos ZP, Fial A, Lennon SL, Smith CS, Creasy SA, Hunter SK, Farquhar WB, Capin JJ | BMJ open sport & exercise medicine | 37920279 | BMJ Open Sport Exerc Med | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37920279 |
| Midlife health crisis of former competitive athletes: dissecting their experiences via qualitative study. | Capin JJ, Wolf TL, Street JH, Smith CS, Lennon SL, Farquhar WB, Hunter SK, Piacentine LB | BMJ open sport & exercise medicine | 38736641 | BMJ Open Sport Exerc Med | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38736641 |
| Prolonged quadriceps latency during gait early after anterior cruciate ligament injury predicts radiographic knee osteoarthritis 6-years after anterior cruciate ligament reconstruction. | Ito N, Capin JJ, Arhos EK, Wellsandt E, Pohlig RT, Buchanan TS, Snyder-Mackler L | Clinical biomechanics (Bristol, Avon) | 38945068 | Clin Biomech (Bristol) | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38945068 |
| Sport training day affects adolescent athletes' sleep schedules. | Larson A, Street JH, de Guia R, Capin JJ | Frontiers in sports and active living | 41675555 | Front Sports Act Living | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41675555 |
| Activity levels across the intensity spectrum in athletes: a systematic review protocol. | Capin JJ, Ridgers ND, Street JH, Fial A, Tomkinson GR | BMJ open sport & exercise medicine | 39161555 | BMJ Open Sport Exerc Med | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39161555 |
| The paradox of sport: adolescent athletes are highly sedentary across competition, practice, and rest days. | Street JH, Larson AM, de Guia R, Bansal N, Hunter SK, Capin JJ | BMC sports science, medicine & rehabilitation | 41572326 | BMC Sports Sci Med Rehabil | 2026 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/41572326 |
| Transitioning to life after sport: empowering former college varsity athletes to live more healthfully. | Piacentine LB, Wolf TL, Capin JJ | Frontiers in sports and active living | 41602799 | Front Sports Act Living | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41602799 |
| A caste differentiation mutant elucidates the evolution of socially parasitic ants. | Trible W, Chandra V, Lacy KD, Limón G, McKenzie SK, Olivos-Cisneros L, Arsenault SV, Kronauer DJC | Current biology : CB | 36858043 | Curr Biol | 2023 Mar 27 | https://www.ncbi.nlm.nih.gov/pubmed/36858043 |
| Germline and Somatic Fumarate Hydratase Testing in Atypical Uterine Leiomyomata. | Kipnis LM, Breen KM, Koeller DR, Levine AS, Yang Z, Jun H, Tayob N, Stokes SM, Hayes CP, Ghazani AA, Hill SJ, Rana HQ | Cancer prevention research (Philadelphia, Pa.) | 38638033 | Cancer Prev Res (Phila) | 2024 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/38638033 |
| The ORFIUS complex regulates ORC2 localization at replication origins. | Yang Z, Mogre S, He R, Berdan EL, Ho Sui SJ, Hill SJ | NAR cancer | 38288445 | NAR Cancer | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38288445 |
| Targeting Galectin 3 illuminates its contributions to the pathology of uterine serous carcinoma. | Matoba Y, Zarrella DT, Pooladanda V, Azimi Mohammadabadi M, Kim E, Kumar S, Xu M, Qin X, Ray LJ, Devins KM, Kumar R, Kononenko A, Eisenhauer E, Veillard IE, Yamagami W, Hill SJ, Sarosiek KA, Yeku OO, Spriggs DR, Rueda BR | British journal of cancer | 38438589 | Br J Cancer | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38438589 |
| Functional Profiling of p53 and RB Cell Cycle Regulatory Proficiency Suggests Mechanism-Driven Molecular Stratification in Endometrial Carcinoma. | Yang Z, Mogre S, Jun H, He R, Ghosh Chaudhary S, Bhattarai UR, Ho Sui SJ, Matulonis UA, Lazo S, Shetty A, Cameron A, Nguyen QD, Hill SJ | Cancer research communications | 39932274 | Cancer Res Commun | 2025 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/39932274 |
| Sialyl-Tn serves as a potential therapeutic target for ovarian cancer. | Al-Alem L, Prendergast JM, Clark J, Zarrella B, Zarrella DT, Hill SJ, Growdon WB, Pooladanda V, Spriggs DR, Cramer D, Elias KM, Nazer RI, Skates SJ, Behrens J, Dransfield DT, Rueda BR | Journal of ovarian research | 38566237 | J Ovarian Res | 2024 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/38566237 |
| Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1-AKT-p53 Interactions. | Lynch KN, Liu JF, Kesten N, Chow KH, Shetty A, He R, Afreen MF, Yuan L, Matulonis UA, Growdon WB, Muto MG, Horowitz NS, Feltmate CM, Worley MJ Jr, Berkowitz RS, Crum CP, Rueda BR, Hill SJ | Cancers | 34063609 | Cancers (Basel) | 2021 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/34063609 |
| Enhanced Efficacy of Simultaneous PD-1 and PD-L1 Immune Checkpoint Blockade in High-Grade Serous Ovarian Cancer. | Wan C, Keany MP, Dong H, Al-Alem LF, Pandya UM, Lazo S, Boehnke K, Lynch KN, Xu R, Zarrella DT, Gu S, Cejas P, Lim K, Long HW, Elias KM, Horowitz NS, Feltmate CM, Muto MG, Worley MJ Jr, Berkowitz RS, Matulonis UA, Nucci MR, Crum CP, Rueda BR, Brown M, Liu XS, Hill SJ | Cancer research | 33158814 | Cancer Res | 2021 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/33158814 |
| Parenting profiles of academic and racial socialization: Associations with academic engagement and academic self-beliefs of African American adolescents. | Metzger IW, Cooper SM, Griffin CB, Golden AR, Opara I, Ritchwood TD | Journal of school psychology | 32988462 | J Sch Psychol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32988462 |
| The brief sense of community scale: Testing dimensionality and measurement invariance by gender among Hispanic/Latinx youth. | Lardier DT Jr, Opara I, Cantu I, Garcia-Reid P, Reid RJ | Journal of community psychology | 33938003 | J Community Psychol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33938003 |
| Feeling Invisible and Unheard: A Qualitative Exploration of Gendered-Racist Stereotypes Influence on Sexual Decision Making and Mistreatment of Black Teen Girls. | Opara I, Weser V, Sands B, Fernandes CF, Hussett-Richardson S, Hieftje K | Youth & society | 35812173 | Youth Soc | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35812173 |
| Understanding Neighborhoods' Impact on Youth Substance Use and Mental Health Outcomes in Paterson, New Jersey: Protocol for a Community-Based Participatory Research Study. | Opara I, R Leonard N, Thorpe D, Kershaw T | JMIR research protocols | 34047712 | JMIR Res Protoc | 2021 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/34047712 |
| Development of an Intervention for Managing Adolescent Anxiety Using Community-Based Participatory Methods: Protocol. | Opara I, Pagan C, Rose RE, Duran-Becerra B, Mwai C, Jadhav S, Valles H, Aneni K | JMIR research protocols | 41172343 | JMIR Res Protoc | 2025 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/41172343 |
| The role of sleep in the relationship between racial discrimination and suicide ideation among black girls: A path analysis. | Opara I, Sissoko GD, Wan X, Weerakoon SM | Journal of affective disorders | 41422961 | J Affect Disord | 2026 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/41422961 |
| Faith Leaders' Perspectives on Involvement in HIV Prevention for Urban Black Youth in New Jersey, USA. | Opara I, Pierre K, Gabriel C, Cross K, Clark CML, Rutledge JD | Religions | 41536578 | Religions (Basel) | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41536578 |
| Applying a community-engaged participatory machine learning model. | Asabor EN, Aneni K, Weerakoon S, Opara I | American journal of community psychology | 39279135 | Am J Community Psychol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39279135 |
| Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 38463537 | Urban Rev | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38463537 |
| Psychological sense of community, community civic participation, and ethnic identity on social justice orientation and psychological empowerment between LGBQ and Non-LGBQ youth of color. | Lardier DT, Opara I, Brammer MK, Pinto SA, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 36855462 | J LGBT Youth | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36855462 |
| "It Makes Me Feel like I Can Make a Difference": A Qualitative Exploration of Peer Mentoring with Black and Hispanic High School Students. | Opara I, Metzger IW, Dawoud S, Pierre K, Assan MA, Garcia-Reid P, Reid RJ | Youth (Basel, Switzerland) | 39555142 | Youth (Basel) | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/39555142 |
| Utilizing Community-Centered Approaches to Address Black Maternal Mortality. | Falako S, Okoli N, Boateng MO, Sandoval J, Gumudavelly D, Larsuel S, Opara I | Health education & behavior : the official publication of the Society for Public Health Education | 37525982 | Health Educ Behav | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37525982 |
| Racial Differences in 1-Year Mortality after Hospitalization for Chronic Obstructive Pulmonary Disease in the United States. | Jain S, Priya A, Pekow P, Spitzer K, Walkey AJ, Opara I, Krumholz HM, Lindenauer PK | Annals of the American Thoracic Society | 37943953 | Ann Am Thorac Soc | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37943953 |
| Young Adults at the National Epicenter of the COVID-19 Outbreak: Understanding the Impact and Future Challenges of Social Distancing on Mental Health Outcomes. | Malik S, Opara I, Lardier DT Jr, Younger J, Greene RN | International journal of environmental research and public health | 38248498 | Int J Environ Res Public Health | 2023 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/38248498 |
| Brief Parent-Child Substance Use Education Intervention for Black Families in Urban Cities in New Jersey: Protocol for a Formative Study Design. | Opara I, Pierre K, Cayo S, Aneni K, Mwai C, Hogue A, Becker S | JMIR research protocols | 38722676 | JMIR Res Protoc | 2024 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/38722676 |
| A Qualitative Exploration on Risk and Protective Factors of Substance Use Among Black Adolescent Girls. | Opara I, Brooks-Stephens JR, Aneni K, Asabor EN, Weerakoon SM, Duran-Becerra B | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 38748661 | J Clin Child Adolesc Psychol | 2026 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/38748661 |
| A Systematic Review on Sexual Health and Drug Use Prevention Interventions for Black Girls. | Opara I, Pierre K, Assan MA, Scheinfeld L, Alves C, Cross K, Lizarraga A, Brawner B | International journal of environmental research and public health | 35328864 | Int J Environ Res Public Health | 2022 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/35328864 |
| What happens when we ask? A phenomenological focus group on HIV prevention and sexual health education among emancipated foster care youth. | Opara I, Lizarraga A, Lardier DT, Herrera A, Garcia-Reid P, Reid RJ | Children and youth services review | 35910532 | Child Youth Serv Rev | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35910532 |
| Intrapersonal psychological empowerment profiles on ethnic identity, social support, and lifetime drug use among Hispanic adolescent girls. | Opara I, Lardier DT Jr, Fernandez Y, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 32787746 | J Ethn Subst Abuse | 2022 Jul-Sep | https://www.ncbi.nlm.nih.gov/pubmed/32787746 |
| Effects of Brief Interventions on Internalizing Symptoms and Substance Use in Youth: A Systematic Review. | McDanal R, Parisi D, Opara I, Schleider JL | Clinical child and family psychology review | 34731373 | Clin Child Fam Psychol Rev | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34731373 |
| Sociopolitical control as a mediator between ethnic identity and social support on 30-day drug use among black girls. | Opara I, Hill AV, Calhoun A, Francois M, Alves C, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 34533434 | J Ethn Subst Abuse | 2023 Jul-Sep | https://www.ncbi.nlm.nih.gov/pubmed/34533434 |
| Reframing Sexual Health for Black Girls and Women in HIV/STI Prevention Work: Highlighting the Role of Identity and Interpersonal Relationships. | Opara I, Abrams JA, Cross K, Amutah-Onukagha N | International journal of environmental research and public health | 34831855 | Int J Environ Res Public Health | 2021 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/34831855 |
| Alcohol Use Cravings as a Mediator Between Associated Risk Factors on Increased Alcohol Use among Youth Adults in New York During the COVID-19 Pandemic. | Opara I, Malik S, Lardier DT Jr, Gamble-George J, Kelly RJ, Okafor CN, Greene RN, Parisi D | Alcoholism treatment quarterly | 34898835 | Alcohol Treat Q | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34898835 |
| Strong Black Women: Linking Stereotypes, Stress, and Overeating Among a Sample of Black Female College Students. | Godbolt D, Opara I, Amutah-Onukagha N | Journal of black studies | 36710718 | J Black Stud | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36710718 |
| Learning from community-based HIV prevention to inform control and mitigation of the COVID-19 pandemic. | Abrams JA, Rutledge J, Opara I | Preventive medicine | 36750159 | Prev Med | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36750159 |
| A complete diploid human genome benchmark for personalized genomics. | Hansen NF, Dwarshuis N, Ji HJ, Rhie A, Loucks H, Logsdon GA, Vollger MR, Storer JM, Kim J, Adam E, Altemose N, Antipov D, Asri M, Barreira S, Bohaczuk SC, Bzikadze AV, Carioscia SA, Carroll A, Chao KH, Chu Y, Das A, Ebert P, English A, Fleharty M, Fleming LE, Formenti G, Guarracino A, Hartley GA, Jenike K, Kalleberg J, Kang Y, King R, Lipovac J, Mastoras M, Mitchell MW, Negi S, Olson ND, Oshima KK, Paulin LF, Pickett BD, Porubsky D, Ranchalis J, Ranjan D, Rautiainen M, Riethman H, Schnabel RD, Sedlazeck FJ, Shafin K, Sikic M, Solar SJ, Sweeten AP, Timp W, Wagner J, Yoo D, Zhou Y, Garrison E, Eichler EE, Schatz MC, Stergachis AB, O'Neill RJ, Miga KH, Salzberg SL, Koren S, Zook JM, Phillippy AM | bioRxiv : the preprint server for biology | 41000953 | bioRxiv | 2025 Sep 21 | https://www.ncbi.nlm.nih.gov/pubmed/41000953 |
| Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition. | Vollger MR, Korlach J, Eldred KC, Swanson E, Underwood JG, Cheng YH, Ranchalis J, Mao Y, Blue EE, Schwarze U, Munson KM, Saunders CT, Wenger AM, Allworth A, Chanprasert S, Duerden BL, Glass I, Horike-Pyne M, Kim M, Leppig KA, McLaughlin IJ, Ogawa J, Rosenthal EA, Sheppeard S, Sherman SM, Strohbehn S, Yuen AL, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Reh TA, Byers PH, Bamshad MJ, Hisama FM, Jarvik GP, Sancak Y, Dipple KM, Stergachis AB | bioRxiv : the preprint server for biology | 37808736 | bioRxiv | 2023 Sep 27 | https://www.ncbi.nlm.nih.gov/pubmed/37808736 |
| Clinical utility of brain MRS imaging of patients with adult-onset non-cirrhotic hyperammonemia. | Stergachis AB, Krier JB, Merugumala SK, Berry GT, Lin AP | Molecular genetics and metabolism reports | 33763331 | Mol Genet Metab Rep | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33763331 |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | bioRxiv : the preprint server for biology | 37131601 | bioRxiv | 2023 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/37131601 |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | Genome research | 39653420 | Genome Res | 2024 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/39653420 |
| Genetic diversity and regulatory features of human-specific NOTCH2NL duplications. | Real TD, Hebbar P, Yoo D, Antonacci F, Pačar I, Diekhans M, Mikol GJ, Popoola OG, Mallory BJ, Vollger MR, Dishuck PC, Guitart X, Rozanski AN, Munson KM, Hoekzema K, Ranchalis JE, Neph SJ, Sedeño-Cortes AE, Paten B, Salama SR, Stergachis AB, Eichler EE | bioRxiv : the preprint server for biology | 40166283 | bioRxiv | 2025 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/40166283 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis A, O'Toole E, Biggins S | Research square | 40313741 | Res Sq | 2025 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/40313741 |
| CUT&TIME captures the history of open chromatin in developing neurons. | Eldred KC, Wooten M, Janssens DH, Hahn J, Neph SJ, Edgerton SJ, Wyatt-Draher G, Sherman SM, Ranchalis JE, Stergachis AB, Reh TA, Henikoff S | bioRxiv : the preprint server for biology | 40950047 | bioRxiv | 2025 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/40950047 |
| Protamine lacunae preserve the paternal chromatin landscape in sperm. | Tullius TW, Heuer RA, Bohaczuk SC, Mallory B, Dubocanin D, Ranchalis J, Ayaz A, Mason CE, Seli E, Phillippy AM, Stergachis AB, Lesch BJ | bioRxiv : the preprint server for biology | 41256633 | bioRxiv | 2025 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/41256633 |
| Principles and functional consequences of plasmid chromatinization in mammalian cells. | Mallory BJ, Tullius TW, Biar CG, Gustafson JA, Bohaczuk SC, Dubocanin D, Starita LM, Stergachis AB | bioRxiv : the preprint server for biology | 40501650 | bioRxiv | 2025 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/40501650 |
| A haplotype-resolved view of human gene regulation. | Vollger MR, Swanson EG, Neph SJ, Ranchalis J, Munson KM, Ho CH, Cheng YHH, Sedeño-Cortés AE, Fondrie WE, Bohaczuk SC, Dippel MA, Mao Y, Parmalee NL, Mallory BJ, Harvey WT, Kwon Y, Garcia GH, Hoekzema K, Meyer JG, Cicek M, Eichler EE, Noble WS, Witten DM, Bennett JT, Ray JP, Stergachis AB | bioRxiv : the preprint server for biology | 40501892 | bioRxiv | 2025 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/40501892 |
| Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition. | Vollger MR, Korlach J, Eldred KC, Swanson E, Underwood JG, Bohaczuk SC, Mao Y, Cheng YH, Ranchalis J, Blue EE, Schwarze U, Munson KM, Saunders CT, Wenger AM, Allworth A, Chanprasert S, Duerden BL, Glass I, Horike-Pyne M, Kim M, Leppig KA, McLaughlin IJ, Ogawa J, Rosenthal EA, Sheppeard S, Sherman SM, Strohbehn S, Yuen AL, Stacey AW, University of Washington Center for Rare Disease Research, Undiagnosed Diseases Network, Reh TA, Byers PH, Bamshad MJ, Hisama FM, Jarvik GP, Sancak Y, Dipple KM, Stergachis AB | Nature genetics | 39880924 | Nat Genet | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39880924 |
| Conservation of dichromatin organization along regional centromeres. | Dubocanin D, Hartley GA, Sedeño Cortés AE, Mao Y, Hedouin S, Ranchalis J, Agarwal A, Logsdon GA, Munson KM, Real T, Mallory BJ, Eichler EE, Biggins S, O'Neill RJ, Stergachis AB | Cell genomics | 40147439 | Cell Genom | 2025 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/40147439 |
| RNA polymerases reshape chromatin architecture and couple transcription on individual fibers. | Tullius TW, Isaac RS, Dubocanin D, Ranchalis J, Churchman LS, Stergachis AB | Molecular cell | 39191261 | Mol Cell | 2024 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/39191261 |
| Stable centromere association of the yeast histone variant Cse4 requires its essential N-terminal domain. | Popchock AR, Hedouin S, Mao Y, Asbury CL, Stergachis AB, Biggins S | The EMBO journal | 39809842 | EMBO J | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39809842 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis A, O'Toole E, Biggins S | bioRxiv : the preprint server for biology | 39975131 | bioRxiv | 2025 Jan 27 | https://www.ncbi.nlm.nih.gov/pubmed/39975131 |
| Full-length isoform sequencing for resolving the molecular basis of Charcot-Marie-Tooth 2A. | Stergachis AB, Blue EE, Gillentine MA, Wang LK, Schwarze U, Cortés AS, Ranchalis J, Allworth A, Bland AE, Chanprasert S, Chen J, Doherty D, Folta AB, Glass I, Horike-Pyne M, Huang AY, Khan AT, Leppig KA, Miller DE, Mirzaa G, Parhin A, Raskind W, Rosenthal EA, Sheppeard S, Strohbehn S, Sybert VP, Tran TT, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Byers PH, Nelson SF, Bamshad MJ, Dipple KM, Jarvik GP, Hoppins S, Hisama FM | bioRxiv : the preprint server for biology | 36798371 | bioRxiv | 2023 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/36798371 |
| A telomere-to-telomere map of somatic mutation burden and functional impact in cancer. | Sohn MH, Dubocanin D, Vollger MR, Kwon Y, Minkina A, Munson KM, Hart SF, Ranchalis JE, Parmalee NL, Sedeño-Cortés AE, Ou J, Au NY, Bohaczuk S, Carroll B, Frazar CD, Harvey WT, Hoekzema K, Huang MF, Jacques CN, Jensen DM, Kolar JT, Lee R, Lin J, Loy K, Mack T, Mao Y, Pham MM, Ryke E, Smith JD, Sutherlin L, Swanson EG, Weiss JM, Wg SA, Carvalho C, Coorens TH, Harris K, Wei CL, Eichler EE, Altemose N, Bennett JT, Stergachis AB | bioRxiv : the preprint server for biology | 41279560 | bioRxiv | 2025 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/41279560 |
| Long-read transcriptome analysis using IsoRanker for identifying pathogenic variants in Mendelian conditions. | Cheng YH, Sedeño-Cortés AE, Ranchalis JE, Munson KM, Vollger MR, Balton E, Genetti CA, Undiagnosed Diseases Network, Genomics Research to Elucidate the Genetics of Rare Diseases consortium, University of Washington Center for Rare Diseases Research, Wojcik MH, Beggs AH, Bamshad MJ, Wei CL, Dipple KM, Kumar RD, Blue EE, Jarvik G, Chong JX, Witten DM, O'Donnell-Luria A, Stergachis AB | medRxiv : the preprint server for health sciences | 41292655 | medRxiv | 2025 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/41292655 |
| Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics. | Nam AS, Chaligne R, Landau DA | Nature reviews. Genetics | 32807900 | Nat Rev Genet | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32807900 |
| CALR-mutated cells are vulnerable to combined inhibition of the proteasome and the endoplasmic reticulum stress response. | Jutzi JS, Marneth AE, Jiménez-Santos MJ, Hem J, Guerra-Moreno A, Rolles B, Bhatt S, Myers SA, Carr SA, Hong Y, Pozdnyakova O, van Galen P, Al-Shahrour F, Nam AS, Mullally A | Leukemia | 36473980 | Leukemia | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36473980 |
| Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation. | Nam AS, Dusaj N, Izzo F, Murali R, Myers RM, Mouhieddine TH, Sotelo J, Benbarche S, Waarts M, Gaiti F, Tahri S, Levine R, Abdel-Wahab O, Godley LA, Chaligne R, Ghobrial I, Landau DA | Nature genetics | 36138229 | Nat Genet | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36138229 |
| Co-mapping clonal and transcriptional heterogeneity in somatic evolution via GoT-Multi. | Pak M, Saurty-Seerunghen MS, Wise K, Abera TA, Lama C, Parghi N, Kang T, Sun X, Gao Q, Bao L, Roshal M, Allan JN, Furman RR, Martelotto LG, Nam AS | Cell genomics | 41075791 | Cell Genom | 2026 Jan 14 | https://www.ncbi.nlm.nih.gov/pubmed/41075791 |
| Transcripts of repetitive DNA elements signal to block phagocytosis of hematopoietic stem cells. | Pessoa Rodrigues C, Collins JM, Yang S, Martinez C, Kim JW, Lama C, Nam AS, Alt C, Lin C, Zon LI | Science (New York, N.Y.) | 39264994 | Science | 2024 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/39264994 |
| Structural parasitology of the malaria parasite Plasmodium falciparum. | Anton L, Cobb DW, Ho CM | Trends in biochemical sciences | 34887149 | Trends Biochem Sci | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34887149 |
| Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition. | Ho CM, Jih J, Lai M, Li X, Goldberg DE, Beck JR, Zhou ZH | Proceedings of the National Academy of Sciences of the United States of America | 34446549 | Proc Natl Acad Sci U S A | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/34446549 |
| Integrated structural biology of the native malarial translation machinery and its inhibition by an antimalarial drug. | Anton L, Cheng W, Haile MT, Dziekan JM, Cobb DW, Zhu X, Han L, Li E, Nair A, Lee CL, Wang H, Ke H, Zhang G, Doud EH, Cowman AF, Ho CM | Nature structural & molecular biology | 40825879 | Nat Struct Mol Biol | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40825879 |
| Endogenous structure of antimalarial target PfATP4 reveals an apicomplexan-specific P-type ATPase modulator. | Haile MT, Shukla A, Zhen J, Mather MW, Bhatnagar S, Morrisey JM, Zhang Z, Vaidya AB, Ho CM | Nature communications | 41115914 | Nat Commun | 2025 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/41115914 |
| Investigation of associations between Piezo1 mechanoreceptor gain-of-function variants and glaucoma-related phenotypes in humans and mice. | Baxter SL, Keenan WT, Athanas AJ, Proudfoot JA, Zangwill LM, Ayyagari R, Liebmann JM, Girkin CA, Patapoutian A, Weinreb RN | Scientific reports | 33149214 | Sci Rep | 2020 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/33149214 |
| Impact of Pupil Dilation on Optical Coherence Tomography Angiography Retinal Microvasculature in Healthy Eyes. | Villatoro G, Bowd C, Proudfoot JA, Manalastas PIC, Nguyen KD, Hou H, Penteado RC, Li AJ, Moghimi S, Ghahari E, Weinreb RN, Zangwill LM | Journal of glaucoma | 32890106 | J Glaucoma | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32890106 |
| Implementing clinical informatics tools for primary care-based diabetic retinopathy screening. | Baxter SL, Quackenbush Q, Cerda J, Gregg C, Millen M, Thorne C | The American journal of managed care | 36252175 | Am J Manag Care | 2022 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/36252175 |
| Gaps in standards for integrating artificial intelligence technologies into ophthalmic practice. | Baxter SL, Lee AY | Current opinion in ophthalmology | 34231531 | Curr Opin Ophthalmol | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34231531 |
| Associations between Socioeconomic Factors and Visit Adherence among Patients with Glaucoma in the All of Us Research Program. | Acuff K, Delavar A, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 36746242 | Ophthalmol Glaucoma | 2023 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/36746242 |
| Trends and practices following the 2016 hydroxychloroquine screening guidelines. | Kalaw FGP, Arnett J, Baxter SL, Walker E, Pedersen B, Borooah S | Scientific reports | 37730825 | Sci Rep | 2023 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/37730825 |
| Federated Learning in Glaucoma: A Comprehensive Review and Future Perspectives. | Hallaj S, Chuter BG, Lieu AC, Singh P, Kalpathy-Cramer J, Xu BY, Christopher M, Zangwill LM, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39214457 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39214457 |
| Ethical considerations for large language models in ophthalmology. | Kalaw FGP, Baxter SL | Current opinion in ophthalmology | 39259616 | Curr Opin Ophthalmol | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39259616 |
| Evaluation and Optimization of Diabetic Retinopathy Screenings for Uninsured Latinx Patients in a Resource-Limited Student-Run Free Clinic. | Bu JJ, Delavar A, Dayao JK, Lieu A, Chuter BG, Chen K, Nishihara T, Meller L, Camp AS, Lee JE, Baxter SL | Journal of student-run clinics | 38287932 | J Stud Run Clin | 2024 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/38287932 |
| Proactive Decision Support for Glaucoma Treatment: Predicting Surgical Interventions with Clinically Available Data. | Christopher M, Gonzalez R, Huynh J, Walker E, Radha Saseendrakumar B, Bowd C, Belghith A, Goldbaum MH, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Weinreb RN, Baxter SL, Zangwill LM | Bioengineering (Basel, Switzerland) | 38391627 | Bioengineering (Basel) | 2024 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/38391627 |
| Social determinants of health and health disparities in glaucoma: A review. | Acuff K, Wu JH, Varkhedi V, Baxter SL | Clinical & experimental ophthalmology | 38385607 | Clin Exp Ophthalmol | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38385607 |
| Social Factors Associated with the Risk of Glaucoma Suspect Conversion to Glaucoma: Analysis of the Nationwide All of Us Program. | Wu JH, Halfpenny W, Bu J, Brar M, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 38959998 | Ophthalmol Glaucoma | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/38959998 |
| Medical, Environmental, and Social Determinants Associated With Periocular Cutaneous Malignancies in the United States Using the All of Us National Database. | Radgoudarzi N, Dallalzadeh L, Saseendrakumar BR, Guo J, Halfpenny W, Kikkawa DO, Baxter S | Cureus | 39219888 | Cureus | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39219888 |
| Assessment of Missing Data on Glaucoma Severity Among Participants in the NIH All of Us Research Program of the United States. | Acuff KN, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Journal of glaucoma | 39133059 | J Glaucoma | 2025 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/39133059 |
| Towards effective data sharing in ophthalmology: data standardization and data privacy. | Halfpenny W, Baxter SL | Current opinion in ophthalmology | 35819893 | Curr Opin Ophthalmol | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/35819893 |
| Novel Association between Opioid Use and Increased Risk of Retinal Vein Occlusion Using the National Institutes of Health All of Us Research Program. | McDermott JJ 4th, Lee TC, Chan AX, Ye GY, Shahrvini B, Saseendrakumar BR, Ferreyra H, Nudleman E, Baxter SL | Ophthalmology science | 35721456 | Ophthalmol Sci | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35721456 |
| Usability and Clinician Acceptance of a Deep Learning-Based Clinical Decision Support Tool for Predicting Glaucomatous Visual Field Progression. | Chen JS, Baxter SL, van den Brandt A, Lieu A, Camp AS, Do JL, Welsbie DS, Moghimi S, Christopher M, Weinreb RN, Zangwill LM | Journal of glaucoma | 36877820 | J Glaucoma | 2023 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/36877820 |
| High-Density Lipoproteins Associated with Age-Related Macular Degeneration in the All of Us Research Program. | Chen JS, Esko JD, Walker E, Gordts PLSM, Baxter SL, Toomey CB | Ophthalmology | 39756691 | Ophthalmology | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/39756691 |
| Barriers to Extracting and Harmonizing Glaucoma Testing Data: Gaps, Shortcomings, and the Pursuit of FAIRness. | Radgoudarzi N, Hallaj S, Boland MV, Stagg B, Wang SY, Xu B, Swaminathan SS, Brown EN, Chen A, Sun CQ, Amarasekera DC, Myers JS, Saifee M, Halfpenny W, Dirkes K, Zangwill L, Goetz KE, Hribar M, Baxter SL | Ophthalmology science | 39429240 | Ophthalmol Sci | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39429240 |
| Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. | Kalaw FGP, Tavakoli K, Baxter SL | Ophthalmology science | 38025157 | Ophthalmol Sci | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38025157 |
| Advancing Toward a Common Data Model in Ophthalmology: Gap Analysis of General Eye Examination Concepts to Standard Observational Medical Outcomes Partnership (OMOP) Concepts. | Cai CX, Halfpenny W, Boland MV, Lehmann HP, Hribar M, Goetz KE, Baxter SL | Ophthalmology science | 38025162 | Ophthalmol Sci | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38025162 |
| Associations between healthcare utilization and access and diabetic retinopathy complications using All of Us nationwide survey data. | Chan AX, McDermott Iv JJ, Lee TC, Ye GY, Shahrvini B, Radha Saseendrakumar B, Baxter SL | PloS one | 35704625 | PLoS One | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35704625 |
| Effects of Smoking on Optic Nerve Head Microvasculature Density in Glaucoma. | Eslani M, Nishida T, Weinreb RN, Baxter S, Mahmoudinezhad G, Kamalipour A, Yarmohammadi A, Zangwill LM, Moghimi S | Journal of glaucoma | 35882030 | J Glaucoma | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/35882030 |
| Social determinants associated with loss of an eye in the United States using the All of Us nationwide database. | Chan AX, Radha Saseendrakumar B, Ozzello DJ, Ting M, Yoon JS, Liu CY, Korn BS, Kikkawa DO, Baxter SL | Orbit (Amsterdam, Netherlands) | 34969350 | Orbit | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34969350 |
| Review of glaucoma medication adherence monitoring in the digital health era. | Erras A, Shahrvini B, Weinreb RN, Baxter SL | The British journal of ophthalmology | 33858837 | Br J Ophthalmol | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33858837 |
| Associations Between Thyroid Eye Disease and Glaucoma Among Those Enrolled in the National Institutes of Health All of Us Research Program. | Delavar A, Radha Saseendrakumar B, Lee TC, Topilow NJ, Ting MA, Liu CY, Korn BS, Weinreb RN, Kikkawa DO, Baxter SL | Ophthalmic plastic and reconstructive surgery | 36394556 | Ophthalmic Plast Reconstr Surg | 2023 Jul-Aug 01 | https://www.ncbi.nlm.nih.gov/pubmed/36394556 |
| Impact of COVID-19 on the Delivery of Eye Care to Uninsured Diabetic Patients at a Student-Run Free Clinic: A Comprehensive Evaluation of Eye Clinic Performance. | Chuter BG, Lieu A, Dayao JKO, Bu JJ, Chen K, Nishihara T, Baxter SL | Journal of student-run clinics | 36890867 | J Stud Run Clin | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36890867 |
| Assessing Usability of Smartwatch Digital Health Devices for Home Blood Pressure Monitoring among Glaucoma Patients. | Bhanvadia SB, Brar MS, Delavar A, Tavakoli K, Saseendrakumar BR, Weinreb RN, Zangwill LM, Baxter SL | Informatics (MDPI) | 36873830 | Informatics (MDPI) | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36873830 |
| Retinal tissue and microvasculature loss in COVID-19 infection. | Kalaw FGP, Warter A, Cavichini M, Knight D, Li A, Deussen D, Galang C, Heinke A, Mendoza V, Borooah S, Baxter SL, Bartsch DU, Cheng L, Freeman WR | Scientific reports | 36991025 | Sci Rep | 2023 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/36991025 |
| Implementation Mapping of the Collaborative University of California Teleophthalmology Initiative (CUTI): A Qualitative Study Using the Exploration, Preparation, Implementation, and Sustainment (EPIS) Framework. | Radgoudarzi N, Gregg C, Quackenbush Q, Yiu G, Freeby M, Su G, Baxter S, Thorne C, Willard-Grace R | Cureus | 39119397 | Cureus | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39119397 |
| Association Between Glucagon-Like Peptide-1 Receptor Agonists Exposure and Intraocular Pressure Change: GLP-1 Receptor Agonists and Intraocular Pressure Change. | Hallaj S, Halfpenny W, Chuter BG, Weinreb RN, Baxter SL, Cui QN | American journal of ophthalmology | 39237049 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39237049 |
| Disparities in Eye Care Utilization Among Refugee and Migrant Populations. | Copado IA, Hallaj S, Radha Saseendrakumar B, Baxter SL | Translational vision science & technology | 38376863 | Transl Vis Sci Technol | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/38376863 |
| Variations in Using Diagnosis Codes for Defining Age-Related Macular Degeneration Cohorts. | Kalaw FGP, Chen JS, Baxter SL | Informatics (MDPI) | 40012991 | Informatics (MDPI) | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40012991 |
| RETINAL STRUCTURAL CHANGES AFTER CESSATION OF PENTOSAN POLYSULFATE SODIUM. | Kalaw FGP, Most J, Kako RN, Sharma P, Arias JD, Chen JS, Lin AC, Walker E, Bartsch DG, Baxter SL, Ferreyra H, Freeman WR, Borooah S | Retina (Philadelphia, Pa.) | 39174300 | Retina | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39174300 |
| Glaucoma Detection and Feature Identification via GPT-4V Fundus Image Analysis. | Jalili J, Jiravarnsirikul A, Bowd C, Chuter B, Belghith A, Goldbaum MH, Baxter SL, Weinreb RN, Zangwill LM, Christopher M | Ophthalmology science | 39877464 | Ophthalmol Sci | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/39877464 |
| Internal carotid artery aneurysm presenting as diplopia via telemedicine during COVID-19. | Baxter SL, Kuo DE, Robbins SL | Journal of telemedicine and telecare | 33412986 | J Telemed Telecare | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/33412986 |
| Comparing the Use of DynaMed and UpToDate by Physician Trainees in Clinical Decision-Making: A Randomized Crossover Trial. | Baxter SL, Lander L, Clay B, Bell J, Hansen K, Walker A, Tai-Seale M | Applied clinical informatics | 35108739 | Appl Clin Inform | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35108739 |
| Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. | Wu Y, Olvera-Barrios A, Yanagihara R, Kung TH, Lu R, Leung I, Mishra AV, Nussinovitch H, Grimaldi G, Blazes M, Lee CS, Egan C, Tufail A, Lee AY | Ophthalmology | 36154868 | Ophthalmology | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36154868 |
| Medication Affordability and Self-Advocacy Among Racial/Ethnic Minorities in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of general internal medicine | 35641727 | J Gen Intern Med | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35641727 |
| Social Determinants of Health Data Availability for Patients with Eye Conditions. | Lee TC, Saseendrakumar BR, Nayak M, Chan AX, McDermott JJ 4th, Shahrvini B, Ye GY, Sitapati AM, Nebeker C, Baxter SL | Ophthalmology science | 35662804 | Ophthalmol Sci | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35662804 |
| Association of Electronic Health Record Inbasket Message Characteristics With Physician Burnout. | Baxter SL, Saseendrakumar BR, Cheung M, Savides TJ, Longhurst CA, Sinsky CA, Millen M, Tai-Seale M | JAMA network open | 36449288 | JAMA Netw Open | 2022 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/36449288 |
| Racial, Ethnic, and Socioeconomic Disparities in Glaucoma Onset and Severity in a Diverse Nationwide Cohort in the United States. | Acuff K, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Journal of glaucoma | 37523618 | J Glaucoma | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37523618 |
| Associations of smoking and alcohol consumption with the development of open angle glaucoma: a retrospective cohort study. | Mahmoudinezhad G, Nishida T, Weinreb RN, Baxter SL, Chang AC, Nikkhoy N, Walker E, Liebmann JM, Girkin CA, Moghimi S | BMJ open | 37793935 | BMJ Open | 2023 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/37793935 |
| Data Sciences and Visual Health Disparities. | Legault G, Nwanyanwu K, Baxter SL | Ophthalmology | 36058740 | Ophthalmology | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36058740 |
| Healthcare Access and Utilization Among Glaucoma Patients in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of glaucoma | 36223287 | J Glaucoma | 2023 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/36223287 |
| Variations in Electronic Health Record-Based Definitions of Diabetic Retinopathy Cohorts: A Literature Review and Quantitative Analysis. | Chen JS, Copado IA, Vallejos C, Kalaw FGP, Soe P, Cai CX, Toy BC, Borkar D, Sun CQ, Shantha JG, Baxter SL | Ophthalmology science | 38560278 | Ophthalmol Sci | 2024 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/38560278 |
| Association of metformin use with primary open-angle glaucoma using data from the National Institutes of Health All of Us Program. | Sidhu S, Radha Saseendrakumar B, Varkhedi V, Wu JH, Parikh A, Nudleman E, Do JL, Moghimi S, Weinreb RN, Baxter SL | BMJ open ophthalmology | 40940077 | BMJ Open Ophthalmol | 2025 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/40940077 |
| Racial Disparities in Barriers to Care for Patients With Diabetic Retinopathy in a Nationwide Cohort. | Huang BB, Radha Saseendrakumar B, Delavar A, Baxter SL | Translational vision science & technology | 36928128 | Transl Vis Sci Technol | 2023 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/36928128 |
| Cross-instrument optical coherence tomography-angiography (OCTA)-based prediction of age-related macular degeneration (AMD) disease activity using artificial intelligence. | Heinke A, Zhang H, Broniarek K, Michalska-Małecka K, Elsner W, Galang CMB, Deussen DN, Warter A, Kalaw F, Nagel I, Agnihotri A, Mehta NN, Klaas JE, Schmelter V, Kozak I, Baxter SL, Bartsch DU, Cheng L, An C, Nguyen T, Freeman WR | Scientific reports | 39511248 | Sci Rep | 2024 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/39511248 |
| A review of ophthalmology education in the era of generative artificial intelligence. | Heinke A, Radgoudarzi N, Huang BB, Baxter SL | Asia-Pacific journal of ophthalmology (Philadelphia, Pa.) | 39134176 | Asia Pac J Ophthalmol (Phila) | 2024 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/39134176 |
| Gap Analysis of Glaucoma Examination Concept Representations within Standard Systemized Nomenclature of Medicine - Clinical Terms. | Hallaj S, Khawaja AP, Rodrigues IAS, Boland MV, Brown EN, Chen A, Stagg BC, Stein JD, Sun CQ, Mahe-Cook AL, Swaminathan SS, Wang SY, Xu BY, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39147325 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39147325 |
| Data Sources for Evaluating Health Disparities in Ophthalmology: Where We Are and Where We Need to Go. | Baxter SL, Nwanyanwu K, Legault G, Lee AY | Ophthalmology | 36058733 | Ophthalmology | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36058733 |
| Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. | Lee CS, Krakauer C, Su YR, Walker RL, Blazes M, McCurry SM, Bowen JD, McCormick WC, Lee AY, Boyko EJ, O'Hare AM, Larson EB, Crane PK | American journal of ophthalmology | 36513155 | Am J Ophthalmol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36513155 |
| Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database. | Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY | Ophthalmic plastic and reconstructive surgery | 36727790 | Ophthalmic Plast Reconstr Surg | 2023 May-Jun 01 | https://www.ncbi.nlm.nih.gov/pubmed/36727790 |
| Predictive Analytics for Glaucoma Using Data From the All of Us Research Program. | Baxter SL, Saseendrakumar BR, Paul P, Kim J, Bonomi L, Kuo TT, Loperena R, Ratsimbazafy F, Boerwinkle E, Cicek M, Clark CR, Cohn E, Gebo K, Mayo K, Mockrin S, Schully SD, Ramirez A, Ohno-Machado L, All of Us Research Program Investigators | American journal of ophthalmology | 33497675 | Am J Ophthalmol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33497675 |
| Evaluating the neuroprotective impact of senolytic drugs on human vision. | El-Nimri NW, Moore SM, Zangwill LM, Proudfoot JA, Weinreb RN, Skowronska-Krawczyk D, Baxter SL | Scientific reports | 33303874 | Sci Rep | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/33303874 |
| Evaluation of bias and gender/racial concordance based on sentiment analysis of narrative evaluations of clinical clerkships using natural language processing. | Bhanvadia S, Radha Saseendrakumar B, Guo J, Spadafore M, Daniel M, Lander L, Baxter SL | BMC medical education | 38491461 | BMC Med Educ | 2024 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/38491461 |
| What will the future role for large language models (LLMs) be in managing patients with glaucoma? | Tavakoli K, Hallaj S, Baxter SL | Expert review of ophthalmology | 40800545 | Expert Rev Ophthalmol | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40800545 |
| Ocular Health and National Data Standards: A Case for Including Visual Acuity in the United States Core Data for Interoperability (USCDI). | Baxter SL, Reed AA, Maa A, Boland MV, Borkar DS, Brown EN, Lum F, Goetz KE | Ophthalmology science | 36570621 | Ophthalmol Sci | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36570621 |
| Relationship Between Glaucoma and Chronic Stress Quantified by Allostatic Load Score in the All of Us Research Program. | Yoo K, Lee C, Baxter SL, Xu BY | American journal of ophthalmology | 39271092 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39271092 |
| Social and Health Care Utilization Factors Associated With Ophthalmic Visit Nonadherence in Glaucoma: An All of Us Study. | Wu JH, Varkhedi V, Radha Saseendrakumar B, Acuff K, Weinreb RN, Baxter SL | Journal of glaucoma | 37671531 | J Glaucoma | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37671531 |
| Microperimetry Findings in Pentosan Polysulfate Maculopathy. | Most J, Kalaw FGP, Walker E, Arias JD, Charng J, Baxter SL, Nudleman E, Ferreyra H, Freeman WR, Chen FK, Borooah S | Ophthalmology. Retina | 37619623 | Ophthalmol Retina | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37619623 |
| Availability of Physical Activity Tracking Data from Wearable Devices for Glaucoma Patients. | Bhanvadia SB, Meller L, Madjedi K, Weinreb RN, Baxter SL | Information (Basel) | 37771713 | Information (Basel) | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37771713 |
| Gender Disparities in Depression, Stress, and Social Support Among Glaucoma Patients. | Delavar A, Bu JJ, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Translational vision science & technology | 38149963 | Transl Vis Sci Technol | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/38149963 |
| Associations Between Physical Activity and Glaucoma: Analysis of the National Institutes of Health All of Us Research Program. | Akarapimand P, Hallaj S, Weinreb RN, Baxter SL | Journal of glaucoma | 41370653 | J Glaucoma | 2026 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/41370653 |
| Multi-Ancestry Genome-Wide Association Study in All of Us for Primary Open- Angle Glaucoma. | Tavakoli K, Huang BB, Mirmira T, Ma N, Weinreb RN, Baxter SL | Research square | 41282083 | Res Sq | 2025 Oct 26 | https://www.ncbi.nlm.nih.gov/pubmed/41282083 |
| Hepatopathology of flaviviruses. | Bailey AL, Diamond MS | Journal of hepatology | 35981935 | J Hepatol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35981935 |
| Effect of Interferon Gamma on Ebola Virus Infection of Primary Kupffer Cells and a Kupffer Cell Line. | Aguilar-Briseño JA, Elliff JM, Patten JJ, Wilson LR, Davey RA, Bailey AL, Maury WJ | Viruses | 37896854 | Viruses | 2023 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/37896854 |
| Development of a hydrogen peroxide-inactivated vaccine that protects against viscerotropic yellow fever in a non-human primate model. | Amanna IJ, Thomas A, Engelmann F, Hammarlund E, Raué HP, Bailey AL, Poore EA, Quintel BK, Lewis AD, Axthelm MK, Johnson AL, Colgin LMA, Diamond MS, Messaoudi I, Slifka MK | Cell reports. Medicine | 39019010 | Cell Rep Med | 2024 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/39019010 |
| Two mutations in NS2B are responsible for attenuation of the yellow fever virus (YFV) vaccine strain 17D. | Qiu X, Bailey AL | PLoS pathogens | 40743291 | PLoS Pathog | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40743291 |
| Mesenteric Ischemia and Bacterial Translocation Precipitate the Intoxication Phase of Yellow Fever. | Thomazella MV, Qiu X, Silveira CGT, Correia CA, Marmorato MP, Sanson E, Norton A, Sharobim M, Ho YL, Dolhnikoff M, Matkovic E, Kallas EG, Duarte-Neto AN, Bailey AL | The Journal of infectious diseases | 40982533 | J Infect Dis | 2026 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/40982533 |
| Impacts of non-nutritive sweeteners on the human microbiome. | Crakes KR, Questell L, Soni S, Suez J | Immunometabolism (Cobham, Surrey) | 40291991 | Immunometabolism (Cobham) | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/40291991 |
| Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome. | Crits-Christoph A, Hallowell HA, Koutouvalis K, Suez J | Gut microbes | 35332832 | Gut Microbes | 2022 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/35332832 |
| Interactions of Non-Nutritive Artificial Sweeteners with the Microbiome in Metabolic Syndrome. | Harrington V, Lau L, Crits-Christoph A, Suez J | Immunometabolism | 35528135 | Immunometabolism | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35528135 |
| Hematopoietic mosaic chromosomal alterations and risk for infection among 767,891 individuals without blood cancer. | Zekavat SM, Lin SH, Bick AG, Liu A, Paruchuri K, Uddin MM, Ye Y, Yu Z, Liu X, Kamatani Y, Pirruccello JP, Pampana A, Loh PR, Kohli P, McCarroll SA, Neale B, Engels EA, Brown DW, Smoller JW, Green R, Karlson EW, Lebo M, Ellinor PT, Weiss ST, Daly MJ, Biobank Japan Project, FinnGen Consortium, Terao C, Zhao H, Ebert BL, COVID-19 Host Genetics Initiative, Ganna A, Machiela MJ, Genovese G, Natarajan P | medRxiv : the preprint server for health sciences | 33236019 | medRxiv | 2020 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/33236019 |
| Healthy Lifestyle and Clonal Hematopoiesis of Indeterminate Potential: Results From the Women's Health Initiative. | Haring B, Reiner AP, Liu J, Tobias DK, Whitsel E, Berger JS, Desai P, Wassertheil-Smoller S, LaMonte MJ, Hayden KM, Bick AG, Natarajan P, Weinstock JS, Nguyen PK, Stefanick M, Simon MS, Eaton CB, Kooperberg C, Manson JE | Journal of the American Heart Association | 33619969 | J Am Heart Assoc | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33619969 |
| Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells. | Bao EL, Nandakumar SK, Liao X, Bick AG, Karjalainen J, Tabaka M, Gan OI, Havulinna AS, Kiiskinen TTJ, Lareau CA, de Lapuente Portilla AL, Li B, Emdin C, Codd V, Nelson CP, Walker CJ, Churchhouse C, de la Chapelle A, Klein DE, Nilsson B, Wilson PWF, Cho K, Pyarajan S, Gaziano JM, Samani NJ, FinnGen, 23andMe Research Team, Regev A, Palotie A, Neale BM, Dick JE, Natarajan P, O'Donnell CJ, Daly MJ, Milyavsky M, Kathiresan S, Sankaran VG | Nature | 33057200 | Nature | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33057200 |
| Increased CHIP Prevalence Amongst People Living with HIV. | Bick AG, Popadin K, Thorball CW, Uddin MM, Zanni M, Yu B, Cavassini M, Rauch A, Tarr P, Schmid P, Bernasconi E, Günthard HF, Libby P, Boerwinkle E, McLaren PJ, Ballantyne CM, Grinspoon S, Natarajan P, Fellay J | medRxiv : the preprint server for health sciences | 33173934 | medRxiv | 2020 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/33173934 |
| Long-term longitudinal analysis of 4,187 participants reveals new insights into determinants of incident clonal hematopoiesis. | Uddin MM, Saadatagah S, Niroula A, Yu B, Hornsby W, Ganesh S, Lannery K, Shuermans A, Honigberg MC, Bick AG, Libby P, Ebert BL, Ballantyne CM, Natarajan P | medRxiv : the preprint server for health sciences | 37732181 | medRxiv | 2023 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/37732181 |
| Solid Organ Transplant Recipients Exhibit More TET2-Mutant Clonal Hematopoiesis of Indeterminate Potential Not Driven by Increased Transplantation Risk. | Silver AJ, Vlasschaert C, Mack T, Sharber B, Xu Y, Bick AG, Pinson CW, Savona MR | Clinical cancer research : an official journal of the American Association for Cancer Research | 38551504 | Clin Cancer Res | 2024 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/38551504 |
| Clonal Hematopoiesis of Indeterminate Potential Predicts Adverse Outcomes in Patients With Atherosclerotic Cardiovascular Disease. | Gumuser ED, Schuermans A, Cho SMJ, Sporn ZA, Uddin MM, Paruchuri K, Nakao T, Yu Z, Haidermota S, Hornsby W, Weeks LD, Niroula A, Jaiswal S, Libby P, Ebert BL, Bick AG, Natarajan P, Honigberg MC | Journal of the American College of Cardiology | 37197843 | J Am Coll Cardiol | 2023 May 23 | https://www.ncbi.nlm.nih.gov/pubmed/37197843 |
| Interleukin-17 receptor-A signalling: atheroprotective role in JAK2 clonal haematopoiesis. | Zhao K, Hsu CC, Pershad Y, Vlasschaert C, Corty RW, Wang N, Heimlich JB, Tall AR, Bick AG | European heart journal | 40986427 | Eur Heart J | 2025 Dec 22 | https://www.ncbi.nlm.nih.gov/pubmed/40986427 |
| Human plasma proteomic profile of clonal hematopoiesis. | Yu Z, Vromman A, Nguyen NQH, Schuermans A, Li L, Rentz T, Nakao T, Vellarikkal SK, Uddin MM, Niroula A, Griffin G, Honigberg MC, Lin AE, Gibson CJ, Katz DH, Tahir UA, Fang S, Dron JS, Pan M, Haidermota S, Ganesh S, Antoine T, Weinstock J, Austin TR, Vasan RS, Peloso GM, Hornsby W, Ganz P, Manson JE, Haring B, Kooperberg C, Reiner AP, Bis JC, Psaty BM, Min YI, Correa A, Lange LA, Post WS, Rotter JI, Rich SS, Wilson JG, Ebert BL, Yu B, Ballantyne CM, Coresh J, Sankaran VG, Bick AG, Jaiswal S, Gerszten RE, NHLBI Trans-Omics for Precision Medicine, Libby P, Gupta RM, Natarajan P | Nature communications | 41309676 | Nat Commun | 2025 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/41309676 |
| Demonstrating paths for unlocking the value of cloud genomics through cross cohort analysis. | Deflaux N, Selvaraj MS, Condon HR, Mayo K, Haidermota S, Basford MA, Lunt C, Philippakis AA, Roden DM, Denny JC, Musick A, Collins R, Allen N, Effingham M, Glazer D, Natarajan P, Bick AG | Nature communications | 37669985 | Nat Commun | 2023 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/37669985 |
| Driver mutation zygosity is a critical factor in predicting clonal hematopoiesis transformation risk. | Kishtagari A, Khan MAW, Li Y, Vlasschaert C, Marneni N, Silver AJ, von Beck K, Spaulding T, Stockton S, Snider C, Sochacki A, Dorand D, Mack TM, Ferrell PB Jr, Xu Y, Bejan CA, Savona MR, Bick AG | Blood cancer journal | 38225345 | Blood Cancer J | 2024 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/38225345 |
| Genetic determinants and phenotypic consequences of blood T-cell proportions in 207,000 diverse individuals. | Poisner H, Faucon A, Cox N, Bick AG | Nature communications | 39112476 | Nat Commun | 2024 Aug 7 | https://www.ncbi.nlm.nih.gov/pubmed/39112476 |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJ, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun J, DeMeo D, Levy D, Johnson A, Mathias R, Taub M, Arnett D, North K, Raffield LM, Carson A, Doyle MF, Rich SS, Rotter JI, Guo X, Cox N, Roden DM, Franceschini N, Desai P, Reiner A, Auer PL, Scheet P, Jaiswal S, Weinstock JS, Bick AG | medRxiv : the preprint server for health sciences | 37905118 | medRxiv | 2023 Oct 21 | https://www.ncbi.nlm.nih.gov/pubmed/37905118 |
| VEXAS-Defining UBA1 Somatic Variants in 245,368 Diverse Individuals in the NIH All Of Us Cohort. | Corty RW, Brogan J, Byram K, Springer J, Grayson PC, Bick AG | Arthritis & rheumatology (Hoboken, N.J.) | 38225170 | Arthritis Rheumatol | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38225170 |
| Genetic drivers and clinical consequences of mosaic chromosomal alterations in 1 million individuals. | Zhao K, Pershad Y, Poisner HM, Ma X, Quade K, Vlasschaert C, Mack T, Khankari NK, von Beck K, Brogan J, Kishtagari A, Corty RW, Li Y, Xu Y, Reiner AP, Scheet P, Auer PL, Bick AG | medRxiv : the preprint server for health sciences | 40093208 | medRxiv | 2025 Mar 6 | https://www.ncbi.nlm.nih.gov/pubmed/40093208 |
| Closing the loop: Teaching single-cell foundation models to learn from perturbations. | Pershad Y, Nandi TN, Van Amburg JC, Parker AC, Ostrowski L, Giannini HK, Ong D, Heimlich JB, Obeng EA, Ericson K, Agarwal A, Madduri RK, Bick AG | bioRxiv : the preprint server for biology | 40672312 | bioRxiv | 2025 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/40672312 |
| Clonal hematopoiesis associated with epigenetic aging and clinical outcomes. | Nachun D, Lu AT, Bick AG, Natarajan P, Weinstock J, Szeto MD, Kathiresan S, Abecasis G, Taylor KD, Guo X, Tracy R, Durda P, Liu Y, Johnson C, Rich SS, Van Den Berg D, Laurie C, Blackwell T, Papanicolaou GJ, Correa A, Raffield LM, Johnson AD, Murabito J, Manson JE, Desai P, Kooperberg C, Assimes TL, Levy D, Rotter JI, Reiner AP, Whitsel EA, Wilson JG, Horvath S, Jaiswal S, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium | Aging cell | 34050697 | Aging Cell | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34050697 |
| Germline risk of clonal haematopoiesis. | Silver AJ, Bick AG, Savona MR | Nature reviews. Genetics | 33986496 | Nat Rev Genet | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33986496 |
| Hematopoietic mosaic chromosomal alterations increase the risk for diverse types of infection. | Zekavat SM, Lin SH, Bick AG, Liu A, Paruchuri K, Wang C, Uddin MM, Ye Y, Yu Z, Liu X, Kamatani Y, Bhattacharya R, Pirruccello JP, Pampana A, Loh PR, Kohli P, McCarroll SA, Kiryluk K, Neale B, Ionita-Laza I, Engels EA, Brown DW, Smoller JW, Green R, Karlson EW, Lebo M, Ellinor PT, Weiss ST, Daly MJ, Biobank Japan Project, FinnGen Consortium, Terao C, Zhao H, Ebert BL, Reilly MP, Ganna A, Machiela MJ, Genovese G, Natarajan P | Nature medicine | 34099924 | Nat Med | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34099924 |
| Patient-specific comorbidities as prognostic variables for survival in myelofibrosis. | Sochacki AL, Bejan CA, Zhao S, Patel A, Kishtagari A, Spaulding TP, Silver AJ, Stockton SS, Pugh K, Dorand RD, Bhatta M, Strayer N, Zhang S, Snider CA, Stricker T, Nazha A, Bick AG, Xu Y, Savona MR | Blood advances | 35420683 | Blood Adv | 2023 Mar 14 | https://www.ncbi.nlm.nih.gov/pubmed/35420683 |
| Clonal hematopoiesis is associated with protection from Alzheimer's disease. | Bouzid H, Belk JA, Jan M, Qi Y, Sarnowski C, Wirth S, Ma L, Chrostek MR, Ahmad H, Nachun D, Yao W, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Beiser A, Bick AG, Bis JC, Fornage M, Longstreth WT Jr, Lopez OL, Natarajan P, Psaty BM, Satizabal CL, Weinstock J, Larson EB, Crane PK, Keene CD, Seshadri S, Satpathy AT, Montine TJ, Jaiswal S | Nature medicine | 37322115 | Nat Med | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37322115 |
| Clonal hematopoiesis in sickle cell disease. | Liggett LA, Cato LD, Weinstock JS, Zhang Y, Nouraie SM, Gladwin MT, Garrett ME, Ashley-Koch A, Telen MJ, Custer B, Kelly S, Dinardo CL, Sabino EC, Loureiro P, Carneiro-Proietti AB, Maximo C, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Reiner AP, Abecasis GR, Williams DA, Natarajan P, Bick AG, Sankaran VG | The Journal of clinical investigation | 34990411 | J Clin Invest | 2022 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/34990411 |
| Interleukin-6 Receptor Polymorphism Attenuates Clonal Hematopoiesis-Mediated Coronary Artery Disease Risk Among 451 180 Individuals in the UK Biobank. | Vlasschaert C, Heimlich JB, Rauh MJ, Natarajan P, Bick AG | Circulation | 36689568 | Circulation | 2023 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/36689568 |
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| Association of Clonal Hematopoiesis of Indeterminate Potential with Incident Heart Failure with Preserved Ejection Fraction. | Reiner AP, Roberts MB, Honigberg MC, Kooperberg C, Desai P, Bick AG, Natarajan P, Manson JE, Whitsel EA, Eaton CB | medRxiv : the preprint server for health sciences | 37333361 | medRxiv | 2023 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/37333361 |
| Age at Menopause, Leukocyte Telomere Length, and Coronary Artery Disease in Postmenopausal Women. | Schuermans A, Nakao T, Uddin MM, Hornsby W, Ganesh S, Shadyab AH, Liu S, Haring B, Shufelt CL, Taub MA, Mathias RA, Kooperberg C, Reiner AP, Bick AG, Manson JE, Natarajan P, Honigberg MC | Circulation research | 37489536 | Circ Res | 2023 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/37489536 |
| Multiomic profiling of human clonal hematopoiesis reveals genotype and cell-specific inflammatory pathway activation. | Heimlich JB, Bhat P, Parker AC, Jenkins MT, Vlasschaert C, Ulloa J, Van Amburg JC, Potts CR, Olson S, Silver AJ, Ahmad A, Sharber B, Brown D, Hu N, van Galen P, Savona MR, Bick AG, Ferrell PB | Blood advances | 38507736 | Blood Adv | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/38507736 |
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| Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood. | Schuermans A, Nakao T, Ruan Y, Koyama S, Yu Z, Uddin MM, Haidermota S, Hornsby W, Lewandowski AJ, Bick AG, Niroula A, Jaiswal S, Ebert BL, Natarajan P, Honigberg MC | Journal of the American Heart Association | 37345823 | J Am Heart Assoc | 2023 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/37345823 |
| Salt and CHIP: Tet2-CH Aggravates Salt-Sensitive Hypertension in Mice. | Vlasschaert C, Crowley SD, Bick AG | Circulation research | 39388535 | Circ Res | 2024 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/39388535 |
| JAK2-mutant clonal hematopoiesis is associated with venous thromboembolism. | Zon RL, Sekar A, Clapham K, Oren O, Niroula A, Bick AG, Gibson CJ, Griffin G, Uddin MM, Neuberg D, Natarajan P, Ebert BL | Blood | 39102652 | Blood | 2024 Nov 14 | https://www.ncbi.nlm.nih.gov/pubmed/39102652 |
| Long-term longitudinal analysis of 4,187 participants reveals insights into determinants of clonal hematopoiesis. | Uddin MM, Saadatagah S, Niroula A, Yu B, Hornsby WE, Ganesh S, Lannery K, Schuermans A, Honigberg MC, Bick AG, Libby P, Ebert BL, Ballantyne CM, Natarajan P | Nature communications | 39251642 | Nat Commun | 2024 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/39251642 |
| Clonal Hematopoiesis Risk Score and All-Cause and Cardiovascular Mortality in Older Adults. | Saadatagah S, Uddin MM, Weeks LD, Niroula A, Ru M, Takahashi K, Gondek L, Yu B, Bick AG, Ebert BL, Platz EA, Natarajan P, Ballantyne CM | JAMA network open | 38231513 | JAMA Netw Open | 2024 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/38231513 |
| Genetic Interleukin-6 Receptor Variant Is Not Associated With Rejection and Mortality After Heart Transplantation. | Amancherla K, Schlendorf KH, Vlasschaert C, Lowery BD, Wells QS, See SB, Zorn E, Colombo PC, Reilly MP, Lindenfeld J, Uriel N, Shah RV, Freedman JE, Moslehi J, Bick AG, Clerkin K | Journal of cardiac failure | 38367904 | J Card Fail | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38367904 |
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| TP53-mediated clonal hematopoiesis confers increased risk for incident atherosclerotic disease. | Zekavat SM, Viana-Huete V, Matesanz N, Jorshery SD, Zuriaga MA, Uddin MM, Trinder M, Paruchuri K, Zorita V, Ferrer-Pérez A, Amorós-Pérez M, Kunderfranco P, Carriero R, Greco CM, Aroca-Crevillen A, Hidalgo A, Damrauer SM, Ballantyne CM, Niroula A, Gibson CJ, Pirruccello J, Griffin G, Ebert BL, Libby P, Fuster V, Zhao H, Ghassemi M, Natarajan P, Bick AG, Fuster JJ, Klarin D | Nature cardiovascular research | 36949957 | Nat Cardiovasc Res | 2023 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/36949957 |
| Clonal Somatic Mutations in Chronic Lung Diseases Are Associated with Reduced Lung Function. | Yun JH, Khan MAW, Ghosh A, Hobbs BD, Castaldi PJ, Hersh CP, Miller PG, Cool CD, Sciurba F, Barwick L, Limper AH, Flaherty K, Criner GJ, Brown K, Wise R, Martinez F, Silverman EK, DeMeo D, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Cho MH, Bick AG | American journal of respiratory and critical care medicine | 37788444 | Am J Respir Crit Care Med | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37788444 |
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| Clonal Hematopoiesis of Indeterminate Potential and Kidney Function Decline in the General Population. | Kestenbaum B, Bick AG, Vlasschaert C, Rauh MJ, Lanktree MB, Franceschini N, Shoemaker MB, Harris RC Jr, Psaty BM, Köttgen A, Natarajan P, Robinson-Cohen C | American journal of kidney diseases : the official journal of the National Kidney Foundation | 36241009 | Am J Kidney Dis | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36241009 |
| Association of Diet Quality With Prevalence of Clonal Hematopoiesis and Adverse Cardiovascular Events. | Bhattacharya R, Zekavat SM, Uddin MM, Pirruccello J, Niroula A, Gibson C, Griffin GK, Libby P, Ebert BL, Bick A, Natarajan P | JAMA cardiology | 34106216 | JAMA Cardiol | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34106216 |
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| Clonal Hematopoiesis Is Associated With Higher Risk of Stroke. | Bhattacharya R, Zekavat SM, Haessler J, Fornage M, Raffield L, Uddin MM, Bick AG, Niroula A, Yu B, Gibson C, Griffin G, Morrison AC, Psaty BM, Longstreth WT, Bis JC, Rich SS, Rotter JI, Tracy RP, Correa A, Seshadri S, Johnson A, Collins JM, Hayden KM, Madsen TE, Ballantyne CM, Jaiswal S, Ebert BL, Kooperberg C, Manson JE, Whitsel EA, NHLBI Trans-Omics for Precision Medicine Program, Natarajan P, Reiner AP | Stroke | 34743536 | Stroke | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34743536 |
| Whole Genome Sequence Analysis of the Plasma Proteome in Black Adults Provides Novel Insights Into Cardiovascular Disease. | Katz DH, Tahir UA, Bick AG, Pampana A, Ngo D, Benson MD, Yu Z, Robbins JM, Chen ZZ, Cruz DE, Deng S, Farrell L, Sinha S, Schmaier AA, Shen D, Gao Y, Hall ME, Correa A, Tracy RP, Durda P, Taylor KD, Liu Y, Johnson WC, Guo X, Yao J, Ida Chen YD, Manichaikul AW, Jain D, Bouchard C, Sarzynski MA, Rich SS, Rotter JI, Wang TJ, Wilson JG, Natarajan P, Gerszten RE, National Heart, Lung, and Blood Institute TOPMed (Trans-Omics for Precision Medicine) Consortium† | Circulation | 34814699 | Circulation | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34814699 |
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| Clonal hematopoiesis of indeterminate potential and outcomes after heart transplantation: A multicenter study. | Amancherla K, Schlendorf KH, Vlasschaert C, Lowery BD, Wells QS, See SB, Zorn E, Colombo PC, Reilly MP, Lindenfeld J, Uriel N, Freedman JE, Shah RV, Moslehi J, Bick AG, Clerkin K | American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons | 37156299 | Am J Transplant | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37156299 |
| Genetic modification of inflammation- and clonal hematopoiesis-associated cardiovascular risk. | Yu Z, Fidler TP, Ruan Y, Vlasschaert C, Nakao T, Uddin MM, Mack T, Niroula A, Heimlich JB, Zekavat SM, Gibson CJ, Griffin GK, Wang Y, Peloso GM, Heard-Costa N, Levy D, Vasan RS, Aguet F, Ardlie KG, Taylor KD, Rich SS, Rotter JI, Libby P, Jaiswal S, Ebert BL, Bick AG, Tall AR, Natarajan P | The Journal of clinical investigation | 37498674 | J Clin Invest | 2023 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/37498674 |
| Increased Risk of Thoracic Aortic Aneurysms With JAK2 V617F. | Nakao T, Yu Z, Vlasschaert C, Uddin MM, Lindsay ME, Ellinor PT, Ebert BL, Bick AG, Pirruccello JP, Natarajan P | Journal of the American College of Cardiology | 37225367 | J Am Coll Cardiol | 2023 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/37225367 |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJF, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun JH, DeMeo D, Levy D, Johnson AD, Mathias RA, Taub MA, Arnett D, North KE, Raffield LM, Carson AP, Doyle MF, Rich SS, Rotter JI, Guo X, Cox NJ, Roden DM, Franceschini N, Desai P, Reiner AP, Auer PL, Scheet PA, Jaiswal S, Weinstock JS, Bick AG | Nature communications | 38714703 | Nat Commun | 2024 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/38714703 |
| Mosaic chromosomal alterations in blood across ancestries using whole-genome sequencing. | Jakubek YA, Zhou Y, Stilp A, Bacon J, Wong JW, Ozcan Z, Arnett D, Barnes K, Bis JC, Boerwinkle E, Brody JA, Carson AP, Chasman DI, Chen J, Cho M, Conomos MP, Cox N, Doyle MF, Fornage M, Guo X, Kardia SLR, Lewis JP, Loos RJF, Ma X, Machiela MJ, Mack TM, Mathias RA, Mitchell BD, Mychaleckyj JC, North K, Pankratz N, Peyser PA, Preuss MH, Psaty B, Raffield LM, Vasan RS, Redline S, Rich SS, Rotter JI, Silverman EK, Smith JA, Smith AP, Taub M, Taylor KD, Yun J, Li Y, Desai P, Bick AG, Reiner AP, Scheet P, Auer PL | Nature genetics | 37904051 | Nat Genet | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37904051 |
| Human level information extraction from clinical reports with finetuned language models. | Liu L, Lian L, Hao Y, Pace A, Kim E, Homsi N, Pershad Y, Lai L, Gracie T, Kishtagari A, Carroll PR, Bick AG, Odisho AY, Chung M, Yala A | Scientific reports | 41286063 | Sci Rep | 2025 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/41286063 |
| Inherited resilience to clonal hematopoiesis by modifying stem cell RNA regulation. | Agarwal G, Antoszewski M, Xie X, Pershad Y, Arora UP, Poon CL, Lyu P, Lee AJ, Guo CJ, Ye T, Norford LB, Neehus AL, Della Volpe L, Wahlster L, Ranasinghe D, Ho TC, Barlowe TS, Chow A, Schurer A, Taggart J, Durham BH, Abdel-Wahab O, McGraw KL, Allan JM, Soldatov R, Bick AG, Kharas MG, Sankaran VG | Science (New York, N.Y.) | 41477881 | Science | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41477881 |
| A clinical algorithm to identify people with the glucose-6-phosphate dehydrogenase p.Val68Met variant at risk for diabetes undertreatment. | Pershad Y, Breeyear JH, Corty RW, Mosley JD, VA Million Veteran Program, Phillips LS, Giri A, Roden DM, Edwards TL, Bick AG | Genetics in medicine open | 41362833 | Genet Med Open | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41362833 |
| Privacy-preserving genotype imputation in a trusted execution environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Cell systems | 34450045 | Cell Syst | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34450045 |
| Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing. | Smajlović H, Shajii A, Berger B, Cho H, Numanagić I | Genome biology | 36631897 | Genome Biol | 2023 Jan 11 | https://www.ncbi.nlm.nih.gov/pubmed/36631897 |
| sfkit: a web-based toolkit for secure and federated genomic analysis. | Mendelsohn S, Froelicher D, Loginov D, Bernick D, Berger B, Cho H | Nucleic acids research | 37246709 | Nucleic Acids Res | 2023 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/37246709 |
| Mechanisms for Hiding Sensitive Genotypes with Information-Theoretic Privacy. | Ye F, Cho H, Rouayheb SE | IEEE transactions on information theory | 37283781 | IEEE Trans Inf Theory | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37283781 |
| Scalable and Privacy-Preserving Federated Principal Component Analysis. | Froelicher D, Cho H, Edupalli M, Sousa JS, Bossuat JP, Pyrgelis A, Troncoso-Pastoriza JR, Berger B, Hubaux JP | Proceedings. IEEE Symposium on Security and Privacy | 38665901 | Proc IEEE Symp Secur Priv | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/38665901 |
| Privacy-Preserving Genotype Imputation in a Trusted Execution Environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 34859247 | Res Comput Mol Biol | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34859247 |
| k-SALSA: k-anonymous synthetic averaging of retinal images via local style alignment. | Jeon M, Park H, Kim HJ, Morley M, Cho H | Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision | 37525827 | Comput Vis ECCV | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37525827 |
| Secure and federated genome-wide association studies for biobank-scale datasets. | Cho H, Froelicher D, Chen J, Edupalli M, Pyrgelis A, Troncoso-Pastoriza JR, Hubaux JP, Berger B | Nature genetics | 39994472 | Nat Genet | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39994472 |
| Secure discovery of genetic relatives across large-scale and distributed genomic data sets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Genome research | 39111815 | Genome Res | 2024 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/39111815 |
| Secure phasing of private genomes in a trusted execution environment with TX-Phase. | Dokmai N, Zhu K, Sahinalp SC, Cho H | Genome research | 41224532 | Genome Res | 2025 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/41224532 |
| Assessing transcriptomic reidentification risks using discriminative sequence models. | Sadhuka S, Fridman D, Berger B, Cho H | Genome research | 37541758 | Genome Res | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37541758 |
| Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption. | Froelicher D, Troncoso-Pastoriza JR, Raisaro JL, Cuendet MA, Sousa JS, Cho H, Berger B, Fellay J, Hubaux JP | Nature communications | 34635645 | Nat Commun | 2021 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/34635645 |
| Privacy-Enhancing Technologies in Biomedical Data Science. | Cho H, Froelicher D, Dokmai N, Nandi A, Sadhuka S, Hong MM, Berger B | Annual review of biomedical data science | 39178425 | Annu Rev Biomed Data Sci | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/39178425 |
| Reconstruction of private genomes through reference-based genotype imputation. | Mosca MJ, Cho H | Genome biology | 38053191 | Genome Biol | 2023 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/38053191 |
| Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 39027313 | Res Comput Mol Biol | 2024 Apr-May | https://www.ncbi.nlm.nih.gov/pubmed/39027313 |
| Shechi: A Secure Distributed Computation Compiler Based on Multiparty Homomorphic Encryption. | Smajlović H, Froelicher D, Shajii A, Berger B, Cho H, Numanagić I | Proceedings. UNIX Security Symposium | 41685295 | Proc (UNIX Secur Symp) | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/41685295 |
| A Multi-User Transradial Functional-Test Socket for Validation of New Myoelectric Prosthetic Control Strategies. | Hansen TC, Citterman AR, Stone ES, Tully TN, Baschuk CM, Duncan CC, George JA | Frontiers in neurorobotics | 35783364 | Front Neurorobot | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35783364 |
| Correcting Temporal Inaccuracies in Labeled Training Data for Electromyographic Control Algorithms. | Wang AT, Olsen CD, Hamrick WC, George JA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 37941234 | IEEE Int Conf Rehabil Robot | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37941234 |
| Functional and Structural Neural Plasticity Following sEMG Control of a Virtual Prosthetic Hand in an Individual with Bilateral Upper-Limb Congenital Amputation. | Feldman DA, Cavinatto DF, Olsen CD, Caden Hamrick W, Paskett MD, Davis TS, Baschuk C, Duncan CC, King JB, Clark GA, George JA, Brinton MR | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336048 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336048 |
| Validity and Impact of Methods for Collecting Training Data for Myoelectric Prosthetic Control Algorithms. | Tully TN, Thomson CJ, Clark GA, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 38739519 | IEEE Trans Neural Syst Rehabil Eng | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38739519 |
| Delayed Muscle Activity in Stroke Survivors with Upper-Limb Hemiparesis. | Lopez DR, Thomson CJ, Mino FR, Edgely SR, Maitre PP, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 38083023 | Annu Int Conf IEEE Eng Med Biol Soc | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38083023 |
| Automated Quantifiable Assessments of Sensorimotor Function Using an Instrumented Fragile Object. | Adkins MD, Buczak MK, Olsen CD, Iversen MM, George JA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 37941235 | IEEE Int Conf Rehabil Robot | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37941235 |
| MATLAB Tool Allowing Wireless Control of Arduino Robot for Early Introduction of Robotics into Curriculum. | Olsen CD, Verkler A, Drew DS, George JA | Annual Conference & Exposition : final program and proceedings. American Society for Engineering Education | 41458562 | Annu Conf Expo (Am Soc Eng Educ) | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/41458562 |
| Reinforcement Learning Agent Trained as FES Controller in Modified Xia-Law Simulation Robustly Controls Grip Force. | Trout MA, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41335691 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41335691 |
| Quantifying the Cognitive Demand of Controlling a Prosthesis with a Secondary Detection Response Task. | Cheng M, Olsen CD, Teramoto M, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41335829 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41335829 |
| A Low-Profile High-Density Electromyography Neckband for Recording Neck Muscle Activity. | Cole KM, Buczak MK, Zhang H, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336129 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336129 |
| Predicting Motor Intent from Residual Neck Muscle Activity in Individuals with Neck Weakness from ALS. | Buczak MK, Brignone J, Cole KM, Caden Hamrick W, Bromberg MB, Zhang H, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336973 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336973 |
| Voice-Controlled Dual-Site Functional Electrical Stimulation Enables Tenodesis Grasping. | Trout MA, Aagard AA, Stanley CT, Saad KM, Rosenbluth JP, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336219 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336219 |
| Intuitive, Myoelectric Control of Adaptive Sports Equipment for Individuals with Tetraplegia. | Buczak MK, Zollinger JM, Alsaleem A, Imburgia R, Rosenbluth J, George JA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 37941260 | IEEE Int Conf Rehabil Robot | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37941260 |
| Wrist EMG Improves Gesture Classification for Stroke Patients. | Olsen CD, Hamrick WC, Lewis SR, Iverson MM, George JA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 37941185 | IEEE Int Conf Rehabil Robot | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37941185 |
| Impaired Discrimination of Electrocutaneous Stimulation in the Paretic Hand of Stroke Survivors. | Citterman AR, Stewart AE, Urban RJ, Trout MA, Maitre PP, Edgley SR, Richards LG, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 38082723 | Annu Int Conf IEEE Eng Med Biol Soc | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38082723 |
| A Bionic Hand for Semi-Autonomous Fragile Object Manipulation via Proximity and Pressure Sensors. | Hansen TC, Trout MA, Segil JL, Warren DJ, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892591 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34892591 |
| Training Movement Velocity Significantly Affects the Performance of Myoelectric Control. | Tully TN, Nelson AE, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 40956733 | IEEE Trans Neural Syst Rehabil Eng | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40956733 |
| Simultaneous and Proportional Myoelectric Control of Multiple Degrees of Freedom in Individuals With Chronic Hemiparesis. | Thomson CJ, Caden Hamrick W, Travis JW, Adkins MD, Maitre PP, Edgely SR, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 40811192 | IEEE Trans Neural Syst Rehabil Eng | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40811192 |
| Enhancing neuroprosthesis calibration: the advantage of integrating prior training over exclusive use of new data. | Thomson CJ, Tully TN, Stone ES, Morrell CB, Scheme EJ, Warren DJ, Hutchinson DT, Clark GA, George JA | Journal of neural engineering | 39569866 | J Neural Eng | 2024 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/39569866 |
| Electromyographically controlled prosthetic wrist improves dexterity and reduces compensatory movements without added cognitive load. | Olsen CD, Olsen NR, Stone ES, Tully TN, Paskett MD, Teramoto M, Clark GA, George JA | Scientific reports | 39370497 | Sci Rep | 2024 Oct 6 | https://www.ncbi.nlm.nih.gov/pubmed/39370497 |
| An Extensible Platform for Measurement and Modification of Muscle Engagement During Upper-Limb Robot-Facilitated Rehabilitation. | Anand A, Berghoff CA, Wynn CJ, Falconer EC, Parra G, Jenkens J, Thomson CJ, Hamrick WC, George JA, Hallock LA | IEEE ... International Conference on Rehabilitation Robotics : [proceedings] | 40644275 | IEEE Int Conf Rehabil Robot | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/40644275 |
| Effect of Wrist Posture on the Intensity, Size, and Location of Hand Sensations Evoked by Transcutaneous Nerve Stimulation at the Wrist. | Hansen KK, Tully TN, Citterman AR, Harrison AT, Trout MA, Thomson CJ, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41336276 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41336276 |
| Improved Prediction of Activities of Daily Living from Wrist Electromyography Using Intermediate Gesture Classification. | Hamrick WC, King TJ, Olsen CD, Nelson AE, Mauchley M, Curd BC, Cliatt Brown C, Frost NA, Iversen MM, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41337392 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41337392 |
| Centimeter Differences in Wrist Electrode Placement Significantly Impact Myoelectric Performance. | Olsen CD, Lewis SR, Gubler JD, Coleman MK, Davis TS, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41337421 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41337421 |
| A Recurrent Neural Network Provides Stable Across-Day Prosthetic Control for a Human Amputee with Implanted Intramuscular Electromyographic Recording Leads. | Thomson CJ, Clark GA, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892525 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34892525 |
| Proportional myoelectric control of a virtual bionic arm in participants with hemiparesis, muscle spasticity, and impaired range of motion. | Thomson CJ, Mino FR, Lopez DR, Maitre PP, Edgley SR, George JA | Journal of neuroengineering and rehabilitation | 39707399 | J Neuroeng Rehabil | 2024 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/39707399 |
| Peptidomimetic Oligomers Targeting Membrane Phosphatidylserine Exhibit Broad Antiviral Activity. | Tate PM, Mastrodomenico V, Cunha C, McClure J, Barron AE, Diamond G, Mounce BC, Kirshenbaum K | ACS infectious diseases | 37530426 | ACS Infect Dis | 2023 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/37530426 |
| A portable, programmable, multichannel stimulator with high compliance voltage for noninvasive neural stimulation of motor and sensory nerves in humans. | Trout MA, Harrison AT, Brinton MR, George JA | Scientific reports | 36859464 | Sci Rep | 2023 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/36859464 |
| Shared human-machine control of an intelligent bionic hand improves grasping and decreases cognitive burden for transradial amputees. | Trout MA, Mino FR, Olsen CD, Hansen TC, Teramoto M, Warren DJ, Segil JL, George JA | Nature communications | 41365851 | Nat Commun | 2025 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/41365851 |
| Multi-Channel Functional Electrical Stimulation to Improve Specificity of Hand Extension. | Stanley CT, Trout MA, Saad KM, Mino FR, Nelson AE, Tully TN, Davis TS, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41337013 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41337013 |
| Cold Tissue Temperature Decreases Electrocutaneous Sensory Perception and Discriminability. | Travis JW, Olsen CD, Reinsch AM, Witt MM, Citterman AR, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 41337022 | Annu Int Conf IEEE Eng Med Biol Soc | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41337022 |
| Mutation bias reflects natural selection in Arabidopsis thaliana. | Monroe JG, Srikant T, Carbonell-Bejerano P, Becker C, Lensink M, Exposito-Alonso M, Klein M, Hildebrandt J, Neumann M, Kliebenstein D, Weng ML, Imbert E, Ågren J, Rutter MT, Fenster CB, Weigel D | Nature | 35022609 | Nature | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35022609 |
| Genetic diversity loss in the Anthropocene. | Exposito-Alonso M, Booker TR, Czech L, Gillespie L, Hateley S, Kyriazis CC, Lang PLM, Leventhal L, Nogues-Bravo D, Pagowski V, Ruffley M, Spence JP, Toro Arana SE, Weiß CL, Zess E | Science (New York, N.Y.) | 36137047 | Science | 2022 Sep 23 | https://www.ncbi.nlm.nih.gov/pubmed/36137047 |
| Uncovering natural variation in root system architecture and growth dynamics using a robotics-assisted phenomics platform. | LaRue T, Lindner H, Srinivas A, Exposito-Alonso M, Lobet G, Dinneny JR | eLife | 36047575 | Elife | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/36047575 |
| Understanding local plant extinctions before it is too late: bridging evolutionary genomics with global ecology. | Exposito-Alonso M | The New phytologist | 36604850 | New Phytol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36604850 |
| Century-long timelines of herbarium genomes predict plant stomatal response to climate change. | Lang PLM, Erberich JM, Lopez L, Weiß CL, Amador G, Fung HF, Latorre SM, Lasky JR, Burbano HA, Expósito-Alonso M, Bergmann DC | Nature ecology & evolution | 39117952 | Nat Ecol Evol | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39117952 |
| grenepipe: a flexible, scalable and reproducible pipeline to automate variant calling from sequence reads. | Czech L, Exposito-Alonso M | Bioinformatics (Oxford, England) | 36053180 | Bioinformatics | 2022 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/36053180 |
| Planting Genomes in the Wild: Arabidopsis from Genetics History to the Ecology and Evolutionary Genomics Era. | Leventhal L, Ruffley M, Exposito-Alonso M | Annual review of plant biology | 39971350 | Annu Rev Plant Biol | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/39971350 |
| grenedalf: population genetic statistics for the next generation of pool sequencing. | Czech L, Spence JP, Expósito-Alonso M | Bioinformatics (Oxford, England) | 39185959 | Bioinformatics | 2024 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/39185959 |
| Large future genetic diversity losses are predicted from conservation indicators even with habitat protection. | Mualim KS, Spence JP, Weiß C, Selmoni O, Lin M, Exposito-Alonso M | Proceedings of the National Academy of Sciences of the United States of America | 41886371 | Proc Natl Acad Sci U S A | 2026 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/41886371 |
| Global coral genomic vulnerability explains recent reef losses. | Selmoni O, Cleves PA, Exposito-Alonso M | Nature communications | 41419485 | Nat Commun | 2025 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/41419485 |
| A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. | Dorone Y, Boeynaems S, Flores E, Jin B, Hateley S, Bossi F, Lazarus E, Pennington JG, Michiels E, De Decker M, Vints K, Baatsen P, Bassel GW, Otegui MS, Holehouse AS, Exposito-Alonso M, Sukenik S, Gitler AD, Rhee SY | Cell | 34233164 | Cell | 2021 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/34233164 |
| Rapid adaptation and extinction across climates in synchronized outdoor evolution experiments of Arabidopsis thaliana. | Wu X, Bellagio T, Peng Y, Czech L, Lin M, Lang P, Epstein R, Abdelaziz M, Alexander J, Caton-Darby M, Alonso-Blanco C, Andersen HL, Berbel M, Bergelson J, Burghardt L, Delker C, Dimitrakopoulos PG, Donohue K, Durka W, Escribano-Avila G, Franks SJ, Fritschi FB, Galanidis A, Garcia-Fernández A, García-Muñoz A, Hamann E, Herber M, Hutt A, Iriondo JM, Juenger TE, Keller S, Koehl K, Korte A, Korte P, Kuschera A, Lara-Romero C, Leventhal L, Maag D, Marcer A, March-Salas M, de Meaux J, Méndez-Vigo B, Morente-López J, Morton TC, Münzbergova Z, Muola A, Pärtel M, Picó FX, Quarles-Chidyagwai B, Quint M, Reichelt N, Rudak A, Schmitt J, Seifan M, Snoek BL, Stam R, Stinchcombe JR, Stift M, Taylor MA, Tiffin P, Till-Bottraud I, Traveset A, Valay JG, van Zanten M, Vandvik V, Violle C, Wódkiewicz M, Weigel D, Bossdorf O, Colautti R, Vasseur F, Scheepens JF, Exposito-Alonso M | bioRxiv : the preprint server for biology | 40501611 | bioRxiv | 2025 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/40501611 |
| Global coral genomic vulnerability explains recent reef losses. | Selmoni O, Cleves PA, Exposito-Alonso M | bioRxiv : the preprint server for biology | 40832279 | bioRxiv | 2025 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/40832279 |
| Large future genetic diversity losses are predicted even with habitat protection. | Mualim KS, Spence JP, Weiß C, Selmoni O, Lin M, Exposito-Alonso M | bioRxiv : the preprint server for biology | 39484505 | bioRxiv | 2025 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/39484505 |
| Deep learning models map rapid plant species changes from citizen science and remote sensing data. | Gillespie LE, Ruffley M, Exposito-Alonso M | Proceedings of the National Academy of Sciences of the United States of America | 39236239 | Proc Natl Acad Sci U S A | 2024 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/39236239 |
| Ecological trade-offs drive phenotypic and genetic differentiation of Arabidopsis thaliana in Europe. | Bastias CC, Estarague A, Vile D, Gaignon E, Lee CR, Exposito-Alonso M, Violle C, Vasseur F | Nature communications | 38890286 | Nat Commun | 2024 Jun 18 | https://www.ncbi.nlm.nih.gov/pubmed/38890286 |
| Acoustofluidic sonoporation for gene delivery to human hematopoietic stem and progenitor cells. | Belling JN, Heidenreich LK, Tian Z, Mendoza AM, Chiou TT, Gong Y, Chen NY, Young TD, Wattanatorn N, Park JH, Scarabelli L, Chiang N, Takahashi J, Young SG, Stieg AZ, De Oliveira S, Huang TJ, Weiss PS, Jonas SJ | Proceedings of the National Academy of Sciences of the United States of America | 32358194 | Proc Natl Acad Sci U S A | 2020 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/32358194 |
| Lipid Bicelle Micropatterning Using Chemical Lift-Off Lithography. | Belling JN, Cheung KM, Jackman JA, Sut TN, Allen M, Park JH, Jonas SJ, Cho NJ, Weiss PS | ACS applied materials & interfaces | 32092250 | ACS Appl Mater Interfaces | 2020 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/32092250 |
| Delivering the CRISPR/Cas9 system for engineering gene therapies: Recent cargo and delivery approaches for clinical translation. | Foley RA, Sims RA, Duggan EC, Olmedo JK, Ma R, Jonas SJ | Frontiers in bioengineering and biotechnology | 36225598 | Front Bioeng Biotechnol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36225598 |
| Supramolecular nanosubstrate-mediated delivery system enables CRISPR-Cas9 knockin of hemoglobin beta gene for hemoglobinopathies. | Yang P, Chou SJ, Li J, Hui W, Liu W, Sun N, Zhang RY, Zhu Y, Tsai ML, Lai HI, Smalley M, Zhang X, Chen J, Romero Z, Liu D, Ke Z, Zou C, Lee CF, Jonas SJ, Ban Q, Weiss PS, Kohn DB, Chen K, Chiou SH, Tseng HR | Science advances | 33097539 | Sci Adv | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33097539 |
| Dual Supramolecular Nanoparticle Vectors Enable CRISPR/Cas9-Mediated Knockin of Retinoschisin 1 Gene-A Potential Nonviral Therapeutic Solution for X-Linked Juvenile Retinoschisis. | Chou SJ, Yang P, Ban Q, Yang YP, Wang ML, Chien CS, Chen SJ, Sun N, Zhu Y, Liu H, Hui W, Lin TC, Wang F, Zhang RY, Nguyen VQ, Liu W, Chen M, Jonas SJ, Weiss PS, Tseng HR, Chiou SH | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 32440478 | Adv Sci (Weinh) | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32440478 |
| Photothermal Intracellular Delivery Using Gold Nanodisk Arrays. | Zhao C, Man T, Xu X, Yang Q, Liu W, Jonas SJ, Teitell MA, Chiou PY, Weiss PS | ACS materials letters | 34708213 | ACS Mater Lett | 2020 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34708213 |
| Fluorinated Silane-Modified Filtroporation Devices Enable Gene Knockout in Human Hematopoietic Stem and Progenitor Cells. | Frost IM, Mendoza AM, Chiou TT, Kim P, Aizenberg J, Kohn DB, De Oliveira SN, Weiss PS, Jonas SJ | ACS applied materials & interfaces | 37616579 | ACS Appl Mater Interfaces | 2023 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/37616579 |
| Cold atmospheric plasma for addressing the COVID-19 pandemic. | Chen Z, Bai F, Jonas SJ, Wirz RE | Plasma processes and polymers (Print) | 35574246 | Plasma Process Polym | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35574246 |
| Surface Lattice Plasmon Resonances by Direct In Situ Substrate Growth of Gold Nanoparticles in Ordered Arrays. | Vinnacombe-Willson GA, Conti Y, Jonas SJ, Weiss PS, Mihi A, Scarabelli L | Advanced materials (Deerfield Beach, Fla.) | 35903851 | Adv Mater | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35903851 |
| Large-Scale Soft-Lithographic Patterning of Plasmonic Nanoparticles. | Chiang N, Scarabelli L, Vinnacombe-Willson GA, Pérez LA, Dore C, Mihi A, Jonas SJ, Weiss PS | ACS materials letters | 34337418 | ACS Mater Lett | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/34337418 |
| In Situ Shape Control of Thermoplasmonic Gold Nanostars on Oxide Substrates for Hyperthermia-Mediated Cell Detachment. | Vinnacombe-Willson GA, Chiang N, Scarabelli L, Hu Y, Heidenreich LK, Li X, Gong Y, Inouye DT, Fisher TS, Weiss PS, Jonas SJ | ACS central science | 33274287 | ACS Cent Sci | 2020 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/33274287 |
| Mixed-dimensional MXene-hydrogel heterostructures for electronic skin sensors with ultrabroad working range. | Cai Y, Shen J, Yang CW, Wan Y, Tang HL, Aljarb AA, Chen C, Fu JH, Wei X, Huang KW, Han Y, Jonas SJ, Dong X, Tung V | Science advances | 33246950 | Sci Adv | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33246950 |
| Exploring the Bottom-Up Growth of Anisotropic Gold Nanoparticles from Substrate-Bound Seeds in Microfluidic Reactors. | Vinnacombe-Willson GA, Lee JK, Chiang N, Scarabelli L, Yue S, Foley R, Frost I, Weiss PS, Jonas SJ | ACS applied nano materials | 37152920 | ACS Appl Nano Mater | 2023 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/37152920 |
| Acoustofluidics-Based Intracellular Nanoparticle Delivery. | Li Z, Tian Z, Belling JN, Rich JT, Zhu H, Ma Z, Bachman H, Shen L, Liang Y, Qi X, Heidenreich LK, Gong Y, Yang S, Zhang W, Zhang P, Fu Y, Ying Y, Jonas SJ, Li Y, Weiss PS, Huang TJ | Engineering (Beijing, China) | 40330125 | Engineering (Beijing) | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/40330125 |
| Supramolecular Nanosubstrate-Mediated Delivery for CRISPR/Cas9 Gene Disruption and Deletion. | Ban Q, Yang P, Chou SJ, Qiao L, Xia H, Xue J, Wang F, Xu X, Sun N, Zhang RY, Zhang C, Lee A, Liu W, Lin TY, Ko YL, Antovski P, Zhang X, Chiou SH, Lee CF, Hui W, Liu D, Jonas SJ, Weiss PS, Tseng HR | Small (Weinheim an der Bergstrasse, Germany) | 34105245 | Small | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34105245 |
| Lipid-Bicelle-Coated Microfluidics for Intracellular Delivery with Reduced Fouling. | Belling JN, Heidenreich LK, Park JH, Kawakami LM, Takahashi J, Frost IM, Gong Y, Young TD, Jackman JA, Jonas SJ, Cho NJ, Weiss PS | ACS applied materials & interfaces | 32940030 | ACS Appl Mater Interfaces | 2020 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/32940030 |
| Self-Powered Programming of Fibroblasts into Neurons via a Scalable Magnetoelastic Generator Array. | Libanori A, Soto J, Xu J, Song Y, Zarubova J, Tat T, Xiao X, Yue SZ, Jonas SJ, Li S, Chen J | Advanced materials (Deerfield Beach, Fla.) | 36468617 | Adv Mater | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36468617 |
| Cold Atmospheric Plasma Induces Growth Arrest and Apoptosis in Neurofibromatosis Type 1-Associated Peripheral Nerve Sheath Tumor Cells. | Na B, Haist B, Shah SR, Sabiston G, Jonas SJ, Vitte J, Wirz RE, Giovannini M | Biomedicines | 39335500 | Biomedicines | 2024 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/39335500 |
| Membrane repair following filtroporation-induced cell permeabilization. | Frost IM, Sims R, Yakimenko A, Ma R, Floridia M, Foley RA, Duggan EC, Cai KY, Jorgensen K, Skuratovsky E, Weiss PS, Jonas SJ | iScience | 41509911 | iScience | 2026 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/41509911 |
| Tumor Extracellular Vesicle Digital Scoring Assays for Cancer Detection and Monitoring. | Lee J, Zhao C, Yang J, Jonas SJ, Agopian V, You S, Posadas E, Yang JD, Zhu Y, Tseng HR | Precision chemistry | 41312082 | Precis Chem | 2025 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/41312082 |
| Detection of Extracellular Vesicles with Colocalized Surface Markers via a Capture-Release-Capture Strategy for Treatment Monitoring in Ewing Sarcoma. | Ji YR, Ju Y, Kong H, Xu Y, Zhao C, Zhang R, Ma Y, Zheng LL, Shi LR, Wu A, Lin LA, Wu CP, Qian A, Ren E, Zhang C, Vo K, Dry S, Crompton JG, Federman N, Zhu Y, Jonas SJ, Tseng HR, Lu S, Lee J | Advanced healthcare materials | 41725127 | Adv Healthc Mater | 2026 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/41725127 |
| Functional landscapes of POLE and POLD1 mutations in checkpoint blockade-dependent antitumor immunity. | Ma X, Riaz N, Samstein RM, Lee M, Makarov V, Valero C, Chowell D, Kuo F, Hoen D, Fitzgerald CWR, Jiang H, Alektiar J, Alban TJ, Juric I, Parthasarathy PB, Zhao Y, Sabio EY, Verma R, Srivastava RM, Vuong L, Yang W, Zhang X, Wang J, Chu LK, Wang SL, Kelly DW, Pei X, Chen J, Yaeger R, Zamarin D, Zehir A, Gönen M, Morris LGT, Chan TA | Nature genetics | 35817971 | Nat Genet | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35817971 |
| Immunology of COVID-19: Current State of the Science. | Vabret N, Britton GJ, Gruber C, Hegde S, Kim J, Kuksin M, Levantovsky R, Malle L, Moreira A, Park MD, Pia L, Risson E, Saffern M, Salomé B, Esai Selvan M, Spindler MP, Tan J, van der Heide V, Gregory JK, Alexandropoulos K, Bhardwaj N, Brown BD, Greenbaum B, Gümüş ZH, Homann D, Horowitz A, Kamphorst AO, Curotto de Lafaille MA, Mehandru S, Merad M, Samstein RM, Sinai Immunology Review Project | Immunity | 32505227 | Immunity | 2020 Jun 16 | https://www.ncbi.nlm.nih.gov/pubmed/32505227 |
| Mutations in BRCA1 and BRCA2 differentially affect the tumor microenvironment and response to checkpoint blockade immunotherapy. | Samstein RM, Krishna C, Ma X, Pei X, Lee KW, Makarov V, Kuo F, Chung J, Srivastava RM, Purohit TA, Hoen DR, Mandal R, Setton J, Wu W, Shah R, Qeriqi B, Chang Q, Kendall S, Braunstein L, Weigelt B, Blecua Carrillo Albornoz P, Morris LGT, Mandelker DL, Reis-Filho JS, de Stanchina E, Powell SN, Chan TA, Riaz N | Nature cancer | 33834176 | Nat Cancer | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33834176 |
| Shared Immunogenic Poly-Epitope Frameshift Mutations in Microsatellite Unstable Tumors. | Roudko V, Bozkus CC, Orfanelli T, McClain CB, Carr C, O'Donnell T, Chakraborty L, Samstein R, Huang KL, Blank SV, Greenbaum B, Bhardwaj N | Cell | 33259803 | Cell | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/33259803 |
| Tumor mutational burden as a predictive biomarker for checkpoint inhibitor immunotherapy. | Lee M, Samstein RM, Valero C, Chan TA, Morris LGT | Human vaccines & immunotherapeutics | 31361563 | Hum Vaccin Immunother | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/31361563 |
| An immunogenetic basis for lung cancer risk. | Krishna C, Tervi A, Saffern M, Wilson EA, Yoo SK, Mars N, Roudko V, Cho BA, Jones SE, Vaninov N, Selvan ME, Gümüş ZH, FinnGen§, Lenz TL, Merad M, Boffetta P, Martínez-Jiménez F, Ollila HM, Samstein RM, Chowell D | Science (New York, N.Y.) | 38386728 | Science | 2024 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/38386728 |
| Improved prediction of immune checkpoint blockade efficacy across multiple cancer types. | Chowell D, Yoo SK, Valero C, Pastore A, Krishna C, Lee M, Hoen D, Shi H, Kelly DW, Patel N, Makarov V, Ma X, Vuong L, Sabio EY, Weiss K, Kuo F, Lenz TL, Samstein RM, Riaz N, Adusumilli PS, Balachandran VP, Plitas G, Ari Hakimi A, Abdel-Wahab O, Shoushtari AN, Postow MA, Motzer RJ, Ladanyi M, Zehir A, Berger MF, Gönen M, Morris LGT, Weinhold N, Chan TA | Nature biotechnology | 34725502 | Nat Biotechnol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34725502 |
| Pathogenic ATM Mutations in Cancer and a Genetic Basis for Radiotherapeutic Efficacy. | Pitter KL, Casey DL, Lu YC, Hannum M, Zhang Z, Song X, Pecorari I, McMillan B, Ma J, Samstein RM, Pei IX, Khan AJ, Braunstein LZ, Morris LGT, Barker CA, Rimner A, Alektiar KM, Romesser PB, Crane CH, Yahalom J, Zelefsky MJ, Scher HI, Bernstein JL, Mandelker DL, Weigelt B, Reis-Filho JS, Lee NY, Powell SN, Chan TA, Riaz N, Setton J | Journal of the National Cancer Institute | 32726432 | J Natl Cancer Inst | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/32726432 |
| Feasibility of Robot-Assisted Ultrasound Imaging with Force Feedback for Assessment of Thyroid Diseases. | Kaminski JT, Rafatzand K, Zhang HK | Proceedings of SPIE--the International Society for Optical Engineering | 32742057 | Proc SPIE Int Soc Opt Eng | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32742057 |
| Tele-Operative Low-Cost Robotic Lung Ultrasound Scanning Platform for Triage of COVID-19 Patients. | Tsumura R, Hardin JW, Bimbraw K, Grossestreuer AV, Odusanya OS, Zheng Y, Hill JC, Hoffmann B, Soboyejo W, Zhang HK | IEEE robotics and automation letters | 34532570 | IEEE Robot Autom Lett | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34532570 |
| Intraoperative Ablation Control Based on Real-Time Necrosis Monitoring Feedback: Numerical Evaluation. | Murakami R, Mori S, Zhang HK | Annals of biomedical engineering | 39133389 | Ann Biomed Eng | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39133389 |
| In-bore MRI-compatible transrectal ultrasound and photoacoustic imaging. | Murakami R, Wang Y, Lesniak WG, Tsumura R, Tang Y, Gao S, Tsunoi Y, Nycz CJ, Pomper MG, Fischer GS, Zhang HK | Photoacoustics | 41280406 | Photoacoustics | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41280406 |
| Enhancing boundary detection of radiofrequency ablation lesions through photoacoustic mapping. | Gao S, Liu H, Post A, Jaworski L, Bernard D, John M, Cosgriff-Hernandez E, Razavi M, Zhang HK | Scientific reports | 39169048 | Sci Rep | 2024 Aug 21 | https://www.ncbi.nlm.nih.gov/pubmed/39169048 |
| Acoustic reflector-enabled forward-viewing ultrasound image-guided access. | Tang Y, Rahaman A, Gonzalez AB, Abouaf I, Malik A, Sorokin I, Zhang H | Journal of medical imaging (Bellingham, Wash.) | 40213618 | J Med Imaging (Bellingham) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40213618 |
| Thermal Ablation Therapy Control with Tissue Necrosis-driven Temperature Feedback Enabled by Neural State Space Model with Extended Kalman Filter. | Murakami R, Mori S, Zhang HK | Proceedings of the ... IEEE/RSJ International Conference on Intelligent Robots and Systems. IEEE/RSJ International Conference on Intelligent Robots and Systems | 40487025 | Rep U S | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40487025 |
| Spectroscopic photoacoustic denoising framework using hybrid analytical and data-free learning method. | Lin F, Gao S, Tang Y, Ma X, Murakami R, Zhang Z, Obayemi JD, Soboyejo WO, Zhang HK | Photoacoustics | 40416360 | Photoacoustics | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40416360 |
| Bendable graded index lens-based laser-scanning optical-resolution photoacoustic microendoscopy. | Liu G, Gao S, Luo DD, Roman M, Maloney E, Bhagavatula S, Ahn SW, Tarallo V, Panikkanvalappil SR, Zhang HK, Jonas O | Optics letters | 40751992 | Opt Lett | 2025 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/40751992 |
| A-SEE: Active-Sensing End-effector Enabled Probe Self-Normal-Positioning for Robotic Ultrasound Imaging Applications. | Ma X, Kuo WY, Yang K, Rahaman A, Zhang HK | IEEE robotics and automation letters | 37325198 | IEEE Robot Autom Lett | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37325198 |
| Anatomical Feature-Based Lung Ultrasound Image Quality Assessment Using Deep Convolutional Neural Network. | Ravishankar SM, Tsumura R, Hardin JW, Hoffmann B, Zhang Z, Zhang HK | IEEE International Ultrasonics Symposium : [proceedings]. IEEE International Ultrasonics Symposium | 35966447 | IEEE Int Ultrason Symp | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35966447 |
| Intraoperative laparoscopic photoacoustic image guidance system in the da Vinci surgical system. | Gao S, Wang Y, Ma X, Zhou H, Jiang Y, Yang K, Lu L, Wang S, Nephew BC, Fichera L, Fischer GS, Zhang HK | Biomedical optics express | 37791285 | Biomed Opt Express | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37791285 |
| Large Area Kidney Imaging for Pre-transplant Evaluation using Real-Time Robotic Optical Coherence Tomography. | Ma X, Moradi M, Ma X, Tang Q, Levi M, Chen Y, Zhang HK | Research square | 37886456 | Res Sq | 2023 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/37886456 |
| Simultaneous Estimation of Hand Configurations and Finger Joint Angles Using Forearm Ultrasound. | Bimbraw K, Nycz CJ, Schueler M, Zhang Z, Zhang HK | IEEE transactions on medical robotics and bionics | 40511365 | IEEE Trans Med Robot Bionics | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40511365 |
| Deep Loss Convexification for Learning Iterative Models. | Zhang Z, Shao Y, Zhang Y, Lin F, Zhang H, Rundensteiner E | IEEE transactions on pattern analysis and machine intelligence | 40030446 | IEEE Trans Pattern Anal Mach Intell | 2024 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/40030446 |
| Cross-Modality Registration using Bone Surface Pointcloud for Robotic Ultrasound-Guided Spine Surgery. | Ma X, Zhang X, Wang Y, Nycz CJ, Sungarian A, Ji S, Huang X, Zhang HK | Journal of medical robotics research | 40687495 | J Med Robot Res | 2025 Mar-Jun | https://www.ncbi.nlm.nih.gov/pubmed/40687495 |
| Direct-Necrosis-Monitoring-Based Adaptive Model Predictive Control for Ablation Therapy Including Patient-Specific Residual Heat Management. | Murakami R, Mori S, Zhang HK | Annals of biomedical engineering | 41886163 | Ann Biomed Eng | 2026 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/41886163 |
| Beyond synthetic aperture focusing: deconvolution-based elevation resolution enhancement using simulated point spread function for linear array-based three-dimensional photoacoustic imaging. | Tang Y, Lesniak WG, Gao S, Wu Y, Pomper MG, Zhang HK | Biomedical optics express | 38495705 | Biomed Opt Express | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/38495705 |
| Concentric-ring arrays for forward-viewing ultrasound imaging. | Tsumura R, Gao S, Tang Y, Zhang HK | Journal of medical imaging (Bellingham, Wash.) | 36444284 | J Med Imaging (Bellingham) | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36444284 |
| Acoustic-resolution photoacoustic microscope based on compact and low-cost delta configuration actuator. | Gao S, Tsumura R, Vang DP, Bisland K, Xu K, Tsunoi Y, Zhang HK | Ultrasonics | 34474357 | Ultrasonics | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34474357 |
| Laparoscopic Photoacoustic Imaging System Based on Side-Illumination Diffusing Fibers. | Gao S, Jiang Y, Li M, Wang Y, Shen Y, Flegal MC, Nephew BC, Fischer GS, Liu Y, Fichera L, Zhang HK | IEEE transactions on bio-medical engineering | 37224375 | IEEE Trans Biomed Eng | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37224375 |
| Autonomous Scanning Target Localization for Robotic Lung Ultrasound Imaging. | Ma X, Zhang Z, Zhang HK | Proceedings of the ... IEEE/RSJ International Conference on Intelligent Robots and Systems. IEEE/RSJ International Conference on Intelligent Robots and Systems | 35965637 | Rep U S | 2021 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/35965637 |
| A-SEE2.0: Active-Sensing End-Effector for Robotic Ultrasound Systems with Dense Contact Surface Perception Enabled Probe Orientation Adjustment. | Zhetpissov Y, Ma X, Yang K, Zhang HK | IEEE robotics and automation letters | 40995401 | IEEE Robot Autom Lett | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40995401 |
| Elevational Synthetic Aperture Focusing for Rotated Array-Based Three-Dimensional Ultrasound Imaging. | Murakami R, Wang Y, Tang Y, Tsumura R, Fischer GS, Zhang HK | IEEE access : practical innovations, open solutions | 40260101 | IEEE Access | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40260101 |
| Cardiac-gated spectroscopic photoacoustic imaging for ablation-induced necrotic lesion visualization. | Gao S, Ashikaga H, Suzuki M, Mansi T, Kim YH, Ghesu FC, Kang J, Boctor EM, Halperin HR, Zhang HK | Journal of biophotonics | 39075610 | J Biophotonics | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39075610 |
| An economic photoacoustic imaging platform using automatic laser synchronization and inverse beamforming. | Wu Y, Zhang HK, Kang J, Boctor EM | Ultrasonics | 32105781 | Ultrasonics | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32105781 |
| Actuated Reflector-Based 3-D Ultrasound Imaging With Synthetic Aperture Focusing. | Tang Y, Tsumura R, Kaminski JT, Zhang HK | IEEE transactions on ultrasonics, ferroelectrics, and frequency control | 35675232 | IEEE Trans Ultrason Ferroelectr Freq Control | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35675232 |
| Ring-arrayed Forward-viewing Ultrasound Imaging System: A Feasibility Study. | Tsumura R, Vang DP, Hata N, Zhang HK | Proceedings of SPIE--the International Society for Optical Engineering | 32782420 | Proc SPIE Int Soc Opt Eng | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32782420 |
| Miniaturized side-firing intracardiac photoacoustic imaging catheter for monitoring radiofrequency ablation. | Gao S, Wang Y, Murakami R, Ashikaga H, Kim YH, Mehrmohammadi M, Halperin HR, Zhang HK | Scientific reports | 40394278 | Sci Rep | 2025 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/40394278 |
| Large area kidney imaging for pre-transplant evaluation using real-time robotic optical coherence tomography. | Ma X, Moradi M, Ma X, Tang Q, Levi M, Chen Y, Zhang HK | Communications engineering | 39223332 | Commun Eng | 2024 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/39223332 |
| Needle Aligned Ultrasound Image-Guided Access Through Dual-Segment Array. | Rahaman A, Tang Y, Gao S, Ma X, Sorokin I, Zhang HK | IEEE transactions on bio-medical engineering | 37030673 | IEEE Trans Biomed Eng | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37030673 |
| Serial enrichment of heteroduplex DNA using a MutS-magnetic bead system. | Murphy ZR, Shields DA, Evrony GD | Biotechnology journal | 36317440 | Biotechnol J | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36317440 |
| Single duplex DNA sequencing with CODEC detects mutations with high sensitivity. | Bae JH, Liu R, Roberts E, Nguyen E, Tabrizi S, Rhoades J, Blewett T, Xiong K, Gydush G, Shea D, An Z, Patel S, Cheng J, Sridhar S, Liu MH, Lassen E, Skytte AB, Grońska-Pęski M, Shoag JE, Evrony GD, Parsons HA, Mayer EL, Makrigiorgos GM, Golub TR, Adalsteinsson VA | Nature genetics | 37106072 | Nat Genet | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37106072 |
| Single-strand mismatch and damage patterns revealed by single-molecule DNA sequencing. | Liu MH, Costa B, Choi U, Bandler RC, Lassen E, Grońska-Pęski M, Schwing A, Murphy ZR, Rosenkjær D, Picciotto S, Bianchi V, Stengs L, Edwards M, Loh CA, Truong TK, Brand RE, Pastinen T, Wagner JR, Skytte AB, Tabori U, Shoag JE, Evrony GD | bioRxiv : the preprint server for biology | 36824744 | bioRxiv | 2023 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/36824744 |
| Applications of Single-Cell DNA Sequencing. | Evrony GD, Hinch AG, Luo C | Annual review of genomics and human genetics | 33722077 | Annu Rev Genomics Hum Genet | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/33722077 |
| DNA mismatch and damage patterns revealed by single-molecule sequencing. | Liu MH, Costa BM, Bianchini EC, Choi U, Bandler RC, Lassen E, Grońska-Pęski M, Schwing A, Murphy ZR, Rosenkjær D, Picciotto S, Bianchi V, Stengs L, Edwards M, Nunes NM, Loh CA, Truong TK, Brand RE, Pastinen T, Wagner JR, Skytte AB, Tabori U, Shoag JE, Evrony GD | Nature | 38867045 | Nature | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38867045 |
| High-fidelity, large-scale targeted profiling of microsatellites. | Loh CA, Shields DA, Schwing A, Evrony GD | Genome research | 39013593 | Genome Res | 2024 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/39013593 |
| How the tissue factor-VIIa complex keeps two substrates in the loop. | Schulman S | Journal of thrombosis and haemostasis : JTH | 33405385 | J Thromb Haemost | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33405385 |
| Associations of thrombocytopenia, transaminase elevations, and transfusion with laboratory coagulation tests in women with preeclampsia: a cross-sectional study. | Combs DJ, Gray KJ, Schulman S, Bateman BT | International journal of obstetric anesthesia | 33798794 | Int J Obstet Anesth | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33798794 |
| Human missense variants in F3 impair the initiation of blood coagulation. | Ansari SA, Brake MA, Pathak N, Flaumenhaft JT, Ludington JG, Panwar N, Turro E, Schulman S | Blood | 41100734 | Blood | 2026 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/41100734 |
| Targeting cargo to an unconventional secretory system within megakaryocytes allows the release of transgenic proteins from platelets. | Asquith NL, Becker IC, Scimone MT, Boccia T, Camacho V, Barrachina MN, Guo S, Freire D, Machlus K, Schulman S, Flaumenhaft R, Italiano JE | Journal of thrombosis and haemostasis : JTH | 39122192 | J Thromb Haemost | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39122192 |
| Human Genetic Variation in F3 and Its Impact on Tissue Factor-Dependent Disease. | Park JK, Brake MA, Schulman S | Seminars in thrombosis and hemostasis | 37201535 | Semin Thromb Hemost | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37201535 |
| TMEM16E regulates endothelial cell procoagulant activity and thrombosis. | Schmaier AA, Anderson PF, Chen SM, El-Darzi E, Aivasovsky I, Kaushik MP, Sack KD, Hartzell HC, Parikh SM, Flaumenhaft R, Schulman S | The Journal of clinical investigation | 36951953 | J Clin Invest | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36951953 |
| Dietary lipids inhibit mitochondria transfer to macrophages to divert adipocyte-derived mitochondria into the blood. | Borcherding N, Jia W, Giwa R, Field RL, Moley JR, Kopecky BJ, Chan MM, Yang BQ, Sabio JM, Walker EC, Osorio O, Bredemeyer AL, Pietka T, Alexander-Brett J, Morley SC, Artyomov MN, Abumrad NA, Schilling J, Lavine K, Crewe C, Brestoff JR | Cell metabolism | 36070756 | Cell Metab | 2022 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/36070756 |
| Hepatic lipids promote liver metastasis. | Li Y, Su X, Rohatgi N, Zhang Y, Brestoff JR, Shoghi KI, Xu Y, Semenkovich CF, Harris CA, Peterson LL, Weilbaecher KN, Teitelbaum SL, Zou W | JCI insight | 32879136 | JCI Insight | 2020 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/32879136 |
| Coronavirus Disease 2019 Severity in Obese Patients May Be Linked to Viral Load and Immune Response. | Lewis AM, Zhang X, Brestoff JR | The Journal of infectious diseases | 34331761 | J Infect Dis | 2021 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/34331761 |
| Intercellular Mitochondria Transfer to Macrophages Regulates White Adipose Tissue Homeostasis and Is Impaired in Obesity. | Brestoff JR, Wilen CB, Moley JR, Li Y, Zou W, Malvin NP, Rowen MN, Saunders BT, Ma H, Mack MR, Hykes BL Jr, Balce DR, Orvedahl A, Williams JW, Rohatgi N, Wang X, McAllaster MR, Handley SA, Kim BS, Doench JG, Zinselmeyer BH, Diamond MS, Virgin HW, Gelman AE, Teitelbaum SL | Cell metabolism | 33278339 | Cell Metab | 2021 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/33278339 |
| Mitochondria Transfer to CD4(+) T Cells May Alleviate Rheumatoid Arthritis by Suppressing Pro-Inflammatory Cytokine Production. | Giwa R, Brestoff JR | Immunometabolism | 35444834 | Immunometabolism | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35444834 |
| A guide to studying mitochondria transfer. | Tiash S, Brestoff JR, Crewe C | Nature cell biology | 37853133 | Nat Cell Biol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37853133 |
| Burning Fat to Fuel EVs. | Crewe C, Brestoff JR | Diabetes | 37862579 | Diabetes | 2023 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/37862579 |
| Full spectrum flow cytometry in the clinical laboratory. | Brestoff JR | International journal of laboratory hematology | 37211417 | Int J Lab Hematol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37211417 |
| Induction of a torpor-like hypothermic and hypometabolic state in rodents by ultrasound. | Yang Y, Yuan J, Field RL, Ye D, Hu Z, Xu K, Xu L, Gong Y, Yue Y, Kravitz AV, Bruchas MR, Cui J, Brestoff JR, Chen H | Nature metabolism | 37231250 | Nat Metab | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37231250 |
| Using information theory to optimize a diagnostic threshold to match physician-ordering practice. | Zaydman MA, Brestoff JR, Jackups R Jr | Journal of biomedical informatics | 33766781 | J Biomed Inform | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33766781 |
| A systematic review and meta-analysis of obesity and COVID-19 outcomes. | Zhang X, Lewis AM, Moley JR, Brestoff JR | Scientific reports | 33785830 | Sci Rep | 2021 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/33785830 |
| Ablation of Fat Cells in Adult Mice Induces Massive Bone Gain. | Zou W, Rohatgi N, Brestoff JR, Li Y, Barve RA, Tycksen E, Kim Y, Silva MJ, Teitelbaum SL | Cell metabolism | 33027637 | Cell Metab | 2020 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/33027637 |
| Multifaceted mitochondrial quality control in brown adipose tissue. | Aquilano K, Zhou B, Brestoff JR, Lettieri-Barbato D | Trends in cell biology | 36272883 | Trends Cell Biol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36272883 |
| Adipocyte lipin 1 expression associates with human metabolic health and regulates systemic metabolism in mice. | LaPoint A, Singer JM, Ferguson D, Shew TM, Renkemeyer MK, Palacios HH, Field RL, Yerrathota S, Kumari R, Shankaran M, Smith GI, Yoshino J, He M, Patti GJ, Hellerstein MK, Klein S, Brestoff JR, Morris EM, Finck BN, Lutkewitte AJ | The Journal of clinical investigation | 39405118 | J Clin Invest | 2024 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/39405118 |
| Blood natural killer cell deficiency reveals an immunotherapy strategy for atopic dermatitis. | Mack MR, Brestoff JR, Berrien-Elliott MM, Trier AM, Yang TB, McCullen M, Collins PL, Niu H, Bodet ND, Wagner JA, Park E, Xu AZ, Wang F, Chibnall R, Council ML, Heffington C, Kreisel F, Margolis DJ, Sheinbein D, Lovato P, Vivier E, Cella M, Colonna M, Yokoyama WM, Oltz EM, Fehniger TA, Kim BS | Science translational medicine | 32102931 | Sci Transl Med | 2020 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/32102931 |
| Myeloid-specific Asxl2 deletion limits diet-induced obesity by regulating energy expenditure. | Zou W, Rohatgi N, Brestoff JR, Moley JR, Li Y, Williams JW, Alippe Y, Pan H, Pietka TA, Mbalaviele G, Newberry EP, Davidson NO, Dey A, Shoghi KI, Head RD, Wickline SA, Randolph GJ, Abumrad NA, Teitelbaum SL | The Journal of clinical investigation | 32310225 | J Clin Invest | 2020 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/32310225 |
| Technological features of blast identification in the cerebrospinal fluid: A systematic review of flow cytometry and laboratory haematology methods. | Frater JL, Shirai CL, Brestoff JR | International journal of laboratory hematology | 35785436 | Int J Lab Hematol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35785436 |
| Ejection of damaged mitochondria and their removal by macrophages ensure efficient thermogenesis in brown adipose tissue. | Rosina M, Ceci V, Turchi R, Chuan L, Borcherding N, Sciarretta F, Sánchez-Díaz M, Tortolici F, Karlinsey K, Chiurchiù V, Fuoco C, Giwa R, Field RL, Audano M, Arena S, Palma A, Riccio F, Shamsi F, Renzone G, Verri M, Crescenzi A, Rizza S, Faienza F, Filomeni G, Kooijman S, Rufini S, de Vries AAF, Scaloni A, Mitro N, Tseng YH, Hidalgo A, Zhou B, Brestoff JR, Aquilano K, Lettieri-Barbato D | Cell metabolism | 35305295 | Cell Metab | 2022 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/35305295 |
| A type 2 immune circuit in the stomach controls mammalian adaptation to dietary chitin. | Kim DH, Wang Y, Jung H, Field RL, Zhang X, Liu TC, Ma C, Fraser JS, Brestoff JR, Van Dyken SJ | Science (New York, N.Y.) | 37676935 | Science | 2023 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/37676935 |
| Lipid-associated macrophages reshape BAT cell identity in obesity. | Sciarretta F, Ninni A, Zaccaria F, Chiurchiù V, Bertola A, Karlinsey K, Jia W, Ceci V, Di Biagio C, Xu Z, Gaudioso F, Tortolici F, Tiberi M, Zhang J, Carotti S, Boudina S, Grumati P, Zhou B, Brestoff JR, Ivanov S, Aquilano K, Lettieri-Barbato D | Cell reports | 38963761 | Cell Rep | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/38963761 |
| The power and potential of mitochondria transfer. | Borcherding N, Brestoff JR | Nature | 37938702 | Nature | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37938702 |
| Web-Based Single Session Intervention for Perceived Control Over Anxiety During COVID-19: Randomized Controlled Trial. | Mullarkey M, Dobias M, Sung J, Ahuvia I, Shumake J, Beevers C, Schleider J | JMIR mental health | 35230962 | JMIR Ment Health | 2022 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/35230962 |
| Acceptability and Utility of an Open-Access, Online Single-Session Intervention Platform for Adolescent Mental Health. | Schleider JL, Dobias M, Sung J, Mumper E, Mullarkey MC | JMIR mental health | 32602846 | JMIR Ment Health | 2020 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/32602846 |
| The impact of COVID-19 on U.S. adolescents: loss of basic needs and engagement in health risk behaviors. | Shroff A, Fassler J, Fox KR, Schleider JL | Current psychology (New Brunswick, N.J.) | 35095242 | Curr Psychol | 2022 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/35095242 |
| Loneliness in Gender-Diverse and Sexual Orientation-Diverse Adolescents: Measurement Invariance Analyses and Between-Group Comparisons. | McDanal R, Schleider JL, Fox KR, Eaton NR | Assessment | 34963320 | Assessment | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34963320 |
| Developing, Deploying, and Evaluating Digital Mental Health Interventions in Spaces of Online Help- and Information-Seeking. | Kruzan KP, Fitzsimmons-Craft EE, Dobias M, Schleider JL, Pratap A | Procedia computer science | 37063642 | Procedia Comput Sci | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/37063642 |
| Future Directions in Single-Session Youth Mental Health Interventions. | Schleider JL, Dobias ML, Sung JY, Mullarkey MC | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 31799863 | J Clin Child Adolesc Psychol | 2020 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/31799863 |
| Mixed-Methods Examination of Adolescent-Reported Barriers to Accessing Mental Health Services. | Mora Ringle VA, Sung JY, Roulston CA, Schleider JL | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 37804301 | J Adolesc Health | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37804301 |
| The fundamental need for lived experience perspectives in developing and evaluating psychotherapies. | Schleider JL | Journal of consulting and clinical psychology | 36795434 | J Consult Clin Psychol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36795434 |
| A "Papageno" Story Interview Suicide Prevention Intervention for Young Adults With Past-Month Suicidal Ideation: Uncontrolled Single-Group Pilot Study of Feedback and Acceptability. | Harness J, Gardner K, Schleider JL, King CA | JMIR formative research | 41129818 | JMIR Form Res | 2025 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/41129818 |
| Barriers to Mental Health Support and Recommendations for Improvement From the Perspectives of LGBTQ+ Youth. | Szkody E, Sotomayor I, Hobaica S, Jans L, Lopez C, Pinder J, Schleider JL | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 40817898 | J Adolesc Health | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40817898 |
| Beliefs about depression relate to active and avoidant coping in high-symptom adolescents. | Pinder JB, Ahuvia IL, Chen S, Schleider JL | Journal of affective disorders | 37977300 | J Affect Disord | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/37977300 |
| A randomized controlled trial comparing brief online self-guided interventions for loneliness. | Kaveladze BT, Gastelum SF, Ngo DC, Delacruz P, Cohen KA, Käll A, Andersson G, Schleider JL, Schueller SM | Journal of consulting and clinical psychology | 39325409 | J Consult Clin Psychol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39325409 |
| Debate: Where to next for universal school-based mental health interventions? Tensions in prevention - To build better school-based programming, we must start with what we know. | Cohen KA, Bruns EJ, Schleider JL | Child and adolescent mental health | 40018868 | Child Adolesc Ment Health | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40018868 |
| Adolescents' beliefs about what symptoms constitute depression: Are more expansive definitions helpful or harmful? | Ahuvia IL, Fox KR, Schleider JL | SSM. Mental health | 38188868 | SSM Ment Health | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/38188868 |
| Embracing Scientific Humility and Complexity: Learning "What Works for Whom" in Youth Psychotherapy Research. | Mullarkey MC, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 34096811 | J Clin Child Adolesc Psychol | 2021 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/34096811 |
| Technology Matters: Online, self-help single session interventions could expand current provision, improving early access to help for young people with depression symptoms, including minority groups. | Loades ME, Schleider JL | Child and adolescent mental health | 37415054 | Child Adolesc Ment Health | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37415054 |
| A randomized trial of online single-session interventions for adolescent depression during COVID-19. | Schleider JL, Mullarkey MC, Fox KR, Dobias ML, Shroff A, Hart EA, Roulston CA | Nature human behaviour | 34887544 | Nat Hum Behav | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34887544 |
| Brief Interventions for Self-injurious Thoughts and Behaviors in Young People: A Systematic Review. | Dobias ML, Chen S, Fox KR, Schleider JL | Clinical child and family psychology review | 36715874 | Clin Child Fam Psychol Rev | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36715874 |
| Serving the Underserved? Uptake, Effectiveness, and Acceptability of Digital SSIs for Rural American Adolescents. | Szkody E, Chang YW, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37931065 | J Clin Child Adolesc Psychol | 2025 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/37931065 |
| Referring Adolescent Primary Care Patients to Single-Session Interventions for Anxiety and Depression: Protocol for a Feasibility Study. | Eyllon M, Dalal M, Jans L, Sotomayor I, Peloquin G, Yon J, Fritz R, Schleider J | JMIR research protocols | 37556202 | JMIR Res Protoc | 2023 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/37556202 |
| Single-Session Interventions Embedded Within Tumblr: Acceptability, Feasibility, and Utility Study. | Dobias ML, Morris RR, Schleider JL | JMIR formative research | 35877163 | JMIR Form Res | 2022 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/35877163 |
| Accessibility and Utility of an Electronic Self-Guided Safety Plan for Adolescents. | Methi N, Weeks I, Hunt R, McGuire TC, Rubin A, Decker M, Schleider JL, Wang SB, Fox K | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 39312731 | J Clin Child Adolesc Psychol | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39312731 |
| Sexual Health Education Experiences and Recommendations from the Perspective of LGBTQ+ Youth. | Hobaica S, Szkody E, Sotomayor I, Liao J, Schleider JL | Journal of sex research | 38880957 | J Sex Res | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/38880957 |
| Dissecting the treatment-naive ecosystem of human melanoma brain metastasis. | Biermann J, Melms JC, Amin AD, Wang Y, Caprio LA, Karz A, Tagore S, Barrera I, Ibarra-Arellano MA, Andreatta M, Fullerton BT, Gretarsson KH, Sahu V, Mangipudy VS, Nguyen TTT, Nair A, Rogava M, Ho P, Koch PD, Banu M, Humala N, Mahajan A, Walsh ZH, Shah SB, Vaccaro DH, Caldwell B, Mu M, Wünnemann F, Chazotte M, Berhe S, Luoma AM, Driver J, Ingham M, Khan SA, Rapisuwon S, Slingluff CL Jr, Eigentler T, Röcken M, Carvajal R, Atkins MB, Davies MA, Agustinus A, Bakhoum SF, Azizi E, Siegelin M, Lu C, Carmona SJ, Hibshoosh H, Ribas A, Canoll P, Bruce JN, Bi WL, Agrawal P, Schapiro D, Hernando E, Macosko EZ, Chen F, Schwartz GK, Izar B | Cell | 35803246 | Cell | 2022 Jul 7 | https://www.ncbi.nlm.nih.gov/pubmed/35803246 |
| Chromosomal instability as a source of genomic plasticity. | Al-Rawi DH, Bakhoum SF | Current opinion in genetics & development | 35526333 | Curr Opin Genet Dev | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35526333 |
| Metastasis and Immune Evasion from Extracellular cGAMP Hydrolysis. | Li J, Duran MA, Dhanota N, Chatila WK, Bettigole SE, Kwon J, Sriram RK, Humphries MP, Salto-Tellez M, James JA, Hanna MG, Melms JC, Vallabhaneni S, Litchfield K, Usaite I, Biswas D, Bareja R, Li HW, Martin ML, Dorsaint P, Cavallo JA, Li P, Pauli C, Gottesdiener L, DiPardo BJ, Hollmann TJ, Merghoub T, Wen HY, Reis-Filho JS, Riaz N, Su SM, Kalbasi A, Vasan N, Powell SN, Wolchok JD, Elemento O, Swanton C, Shoushtari AN, Parkes EE, Izar B, Bakhoum SF | Cancer discovery | 33372007 | Cancer Discov | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33372007 |
| Loss of polycomb repressive complex 1 activity and chromosomal instability drive uveal melanoma progression. | Bakhoum MF, Francis JH, Agustinus A, Earlie EM, Di Bona M, Abramson DH, Duran M, Masilionis I, Molina E, Shoushtari AN, Goldbaum MH, Mischel PS, Bakhoum SF, Laughney AM | Nature communications | 34518527 | Nat Commun | 2021 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/34518527 |
| Induction of APOBEC3 Exacerbates DNA Replication Stress and Chromosomal Instability in Early Breast and Lung Cancer Evolution. | Venkatesan S, Angelova M, Puttick C, Zhai H, Caswell DR, Lu WT, Dietzen M, Galanos P, Evangelou K, Bellelli R, Lim EL, Watkins TBK, Rowan A, Teixeira VH, Zhao Y, Chen H, Ngo B, Zalmas LP, Al Bakir M, Hobor S, Grönroos E, Pennycuick A, Nigro E, Campbell BB, Brown WL, Akarca AU, Marafioti T, Wu MY, Howell M, Boulton SJ, Bertoli C, Fenton TR, de Bruin RAM, Maya-Mendoza A, Santoni-Rugiu E, Hynds RE, Gorgoulis VG, Jamal-Hanjani M, McGranahan N, Harris RS, Janes SM, Bartkova J, Bakhoum SF, Bartek J, Kanu N, Swanton C, TRACERx Consortium | Cancer discovery | 33947663 | Cancer Discov | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33947663 |
| Chromosomal instability as a driver of cancer progression. | Chen X, Agustinus AS, Li J, DiBona M, Bakhoum SF | Nature reviews. Genetics | 39075192 | Nat Rev Genet | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39075192 |
| APOBEC3 as a driver of genetic intratumor heterogeneity. | Venkatesan S, Angelova M, Bartkova J, Bakhoum SF, Bartek J, Kanu N, Swanton C | Molecular & cellular oncology | 38116246 | Mol Cell Oncol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38116246 |
| Intratumoral TREX1 Induction Promotes Immune Evasion by Limiting Type I IFN. | Toufektchan E, Dananberg A, Striepen J, Hickling JH, Shim A, Chen Y, Nichols A, Duran Paez MA, Mohr L, Bakhoum SF, Maciejowski J | Cancer immunology research | 38408184 | Cancer Immunol Res | 2024 Jun 4 | https://www.ncbi.nlm.nih.gov/pubmed/38408184 |
| Structure-based protein design with deep learning. | Ovchinnikov S, Huang PS | Current opinion in chemical biology | 34547592 | Curr Opin Chem Biol | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34547592 |
| Easy and accurate protein structure prediction using ColabFold. | Kim G, Lee S, Levy Karin E, Kim H, Moriwaki Y, Ovchinnikov S, Steinegger M, Mirdita M | Nature protocols | 39402428 | Nat Protoc | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39402428 |
| Stable de novo protein design via joint conformational landscape and sequence optimization. | Cho Y, Dauparas J, Tsuboyama K, Rocklin GJ, Ovchinnikov S | Nature communications | 41444215 | Nat Commun | 2025 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/41444215 |
| Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex. | Wu X, Siggel M, Ovchinnikov S, Mi W, Svetlov V, Nudler E, Liao M, Hummer G, Rapoport TA | Science (New York, N.Y.) | 32327568 | Science | 2020 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/32327568 |
| Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation. | Cooper CJ, Zheng K, Rush KW, Johs A, Sanders BC, Pavlopoulos GA, Kyrpides NC, Podar M, Ovchinnikov S, Ragsdale SW, Parks JM | Communications biology | 32561885 | Commun Biol | 2020 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/32561885 |
| Cyclic peptide structure prediction and design using AlphaFold. | Rettie SA, Campbell KV, Bera AK, Kang A, Kozlov S, De La Cruz J, Adebomi V, Zhou G, DiMaio F, Ovchinnikov S, Bhardwaj G | bioRxiv : the preprint server for biology | 36865323 | bioRxiv | 2023 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/36865323 |
| Protein interaction networks revealed by proteome coevolution. | Cong Q, Anishchenko I, Ovchinnikov S, Baker D | Science (New York, N.Y.) | 31296772 | Science | 2019 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/31296772 |
| Genomic language model predicts protein co-regulation and function. | Hwang Y, Cornman AL, Kellogg EH, Ovchinnikov S, Girguis PR | Nature communications | 38570504 | Nat Commun | 2024 Apr 3 | https://www.ncbi.nlm.nih.gov/pubmed/38570504 |
| One-shot design of functional protein binders with BindCraft. | Pacesa M, Nickel L, Schellhaas C, Schmidt J, Pyatova E, Kissling L, Barendse P, Choudhury J, Kapoor S, Alcaraz-Serna A, Cho Y, Ghamary KH, Vinué L, Yachnin BJ, Wollacott AM, Buckley S, Westphal AH, Lindhoud S, Georgeon S, Goverde CA, Hatzopoulos GN, Gönczy P, Muller YD, Schwank G, Swarts DC, Vecchio AJ, Schneider BL, Ovchinnikov S, Correia BE | Nature | 40866699 | Nature | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40866699 |
| AF2BIND: predicting small-molecule binding sites using the pair representation of AlphaFold2. | Gazizov A, Lian A, Goverde C, Mou J, Ovchinnikov S, Polizzi NF | Nature methods | 41814061 | Nat Methods | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41814061 |
| De novo protein design by deep network hallucination. | Anishchenko I, Pellock SJ, Chidyausiku TM, Ramelot TA, Ovchinnikov S, Hao J, Bafna K, Norn C, Kang A, Bera AK, DiMaio F, Carter L, Chow CM, Montelione GT, Baker D | Nature | 34853475 | Nature | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34853475 |
| Accurate prediction of protein structures and interactions using a three-track neural network. | Baek M, DiMaio F, Anishchenko I, Dauparas J, Ovchinnikov S, Lee GR, Wang J, Cong Q, Kinch LN, Schaeffer RD, Millán C, Park H, Adams C, Glassman CR, DeGiovanni A, Pereira JH, Rodrigues AV, van Dijk AA, Ebrecht AC, Opperman DJ, Sagmeister T, Buhlheller C, Pavkov-Keller T, Rathinaswamy MK, Dalwadi U, Yip CK, Burke JE, Garcia KC, Grishin NV, Adams PD, Read RJ, Baker D | Science (New York, N.Y.) | 34282049 | Science | 2021 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/34282049 |
| Scaffolding protein functional sites using deep learning. | Wang J, Lisanza S, Juergens D, Tischer D, Watson JL, Castro KM, Ragotte R, Saragovi A, Milles LF, Baek M, Anishchenko I, Yang W, Hicks DR, Expòsit M, Schlichthaerle T, Chun JH, Dauparas J, Bennett N, Wicky BIM, Muenks A, DiMaio F, Correia B, Ovchinnikov S, Baker D | Science (New York, N.Y.) | 35862514 | Science | 2022 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/35862514 |
| End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. | Petti S, Bhattacharya N, Rao R, Dauparas J, Thomas N, Zhou J, Rush AM, Koo P, Ovchinnikov S | Bioinformatics (Oxford, England) | 36355460 | Bioinformatics | 2023 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/36355460 |
| Unraveling the functional dark matter through global metagenomics. | Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E, Novel Metagenome Protein Families Consortium, Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC | Nature | 37821698 | Nature | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37821698 |
| Protein language models learn evolutionary statistics of interacting sequence motifs. | Zhang Z, Wayment-Steele HK, Brixi G, Wang H, Kern D, Ovchinnikov S | Proceedings of the National Academy of Sciences of the United States of America | 39467119 | Proc Natl Acad Sci U S A | 2024 Nov 5 | https://www.ncbi.nlm.nih.gov/pubmed/39467119 |
| Validation of de novo designed water-soluble and transmembrane β-barrels by in silico folding and melting. | Hermosilla AM, Berner C, Ovchinnikov S, Vorobieva AA | Protein science : a publication of the Protein Society | 38864690 | Protein Sci | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38864690 |
| Computational design of soluble and functional membrane protein analogues. | Goverde CA, Pacesa M, Goldbach N, Dornfeld LJ, Balbi PEM, Georgeon S, Rosset S, Kapoor S, Choudhury J, Dauparas J, Schellhaas C, Kozlov S, Baker D, Ovchinnikov S, Vecchio AJ, Correia BE | Nature | 38898281 | Nature | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38898281 |
| De novo design of a peptide modulator to reverse sodium channel dysfunction linked to cardiac arrhythmias and epilepsy. | Mahling R, Hegyi B, Cullen ER, Cho TM, Rodriques AR, Fossier L, Yehya M, Yang L, Chen BX, Katchman AN, Chakouri N, Ji R, Wan EY, Kushner J, Marx SO, Ovchinnikov S, Makinson CD, Bers DM, Ben-Johny M | Cell | 40829586 | Cell | 2025 Oct 30 | https://www.ncbi.nlm.nih.gov/pubmed/40829586 |
| Cyclic peptide structure prediction and design using AlphaFold2. | Rettie SA, Campbell KV, Bera AK, Kang A, Kozlov S, Bueso YF, De La Cruz J, Ahlrichs M, Cheng S, Gerben SR, Lamb M, Murray A, Adebomi V, Zhou G, DiMaio F, Ovchinnikov S, Bhardwaj G | Nature communications | 40399308 | Nat Commun | 2025 May 21 | https://www.ncbi.nlm.nih.gov/pubmed/40399308 |
| Improved protein structure prediction using predicted interresidue orientations. | Yang J, Anishchenko I, Park H, Peng Z, Ovchinnikov S, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 31896580 | Proc Natl Acad Sci U S A | 2020 Jan 21 | https://www.ncbi.nlm.nih.gov/pubmed/31896580 |
| ColabFold: making protein folding accessible to all. | Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M | Nature methods | 35637307 | Nat Methods | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35637307 |
| A structural biology community assessment of AlphaFold2 applications. | Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, Dunham AS, Burke D, Borkakoti N, Velankar S, Frost A, Basquin J, Lindorff-Larsen K, Bateman A, Kajava AV, Valencia A, Ovchinnikov S, Durairaj J, Ascher DB, Thornton JM, Davey NE, Stein A, Elofsson A, Croll TI, Beltrao P | Nature structural & molecular biology | 36344848 | Nat Struct Mol Biol | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36344848 |
| A demonstration of unsupervised machine learning in species delimitation. | Derkarabetian S, Castillo S, Koo PK, Ovchinnikov S, Hedin M | Molecular phylogenetics and evolution | 31323334 | Mol Phylogenet Evol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31323334 |
| Protein sequence design by conformational landscape optimization. | Norn C, Wicky BIM, Juergens D, Liu S, Kim D, Tischer D, Koepnick B, Anishchenko I, Foldit Players, Baker D, Ovchinnikov S | Proceedings of the National Academy of Sciences of the United States of America | 33712545 | Proc Natl Acad Sci U S A | 2021 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/33712545 |
| Scalable protein design using optimization in a relaxed sequence space. | Frank C, Khoshouei A, Fuβ L, Schiwietz D, Putz D, Weber L, Zhao Z, Hattori M, Feng S, de Stigter Y, Ovchinnikov S, Dietz H | Science (New York, N.Y.) | 39446959 | Science | 2024 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/39446959 |
| State-of-the-Art Estimation of Protein Model Accuracy Using AlphaFold. | Roney JP, Ovchinnikov S | Physical review letters | 36563190 | Phys Rev Lett | 2022 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/36563190 |
| De novo design of small beta barrel proteins. | Kim DE, Jensen DR, Feldman D, Tischer D, Saleem A, Chow CM, Li X, Carter L, Milles L, Nguyen H, Kang A, Bera AK, Peterson FC, Volkman BF, Ovchinnikov S, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 36897987 | Proc Natl Acad Sci U S A | 2023 Mar 14 | https://www.ncbi.nlm.nih.gov/pubmed/36897987 |
| Imaging sensitive and drug-resistant bacterial infection with [11C]-trimethoprim. | Lee IK, Jacome DA, Cho JK, Tu V, Young AJ, Dominguez T, Northrup JD, Etersque JM, Lee HS, Ruff A, Aklilu O, Bittinger K, Glaser LJ, Dorgan D, Hadjiliadis D, Kohli RM, Mach RH, Mankoff DA, Doot RK, Sellmyer MA | The Journal of clinical investigation | 36106638 | J Clin Invest | 2022 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/36106638 |
| (18)F-Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography Following Chimeric Antigen Receptor T-cell Therapy in Large B-cell Lymphoma. | Ruff A, Ballard HJ, Pantel AR, Namoglu EC, Hughes ME, Nasta SD, Chong EA, Bagg A, Ruella M, Farwell MD, Svoboda J, Sellmyer MA | Molecular imaging and biology | 34231105 | Mol Imaging Biol | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34231105 |
| Building the Bridge: Molecular Imaging Biomarkers for 21(st) Century Cancer Therapies. | Sellmyer MA, Lee IK, Mankoff DA | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 34446450 | J Nucl Med | 2021 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/34446450 |
| A Chemical Approach for Programmable Protein Outputs Based on Engineered Cell Interactions. | Jacome DA, Northrup JD, Ruff AJ, Reilly SW, Lee IK, Blizard GS, Sellmyer MA | ACS chemical biology | 33351606 | ACS Chem Biol | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/33351606 |
| Molecular imaging of bacterial infections: Overcoming the barriers to clinical translation. | Ordonez AA, Sellmyer MA, Gowrishankar G, Ruiz-Bedoya CA, Tucker EW, Palestro CJ, Hammoud DA, Jain SK | Science translational medicine | 31484790 | Sci Transl Med | 2019 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/31484790 |
| Photocontrolled trimethoprim PROTACs targeting the eDHFR protein tag. | Sharma N, Sarkar S, Ko T, Edwards KJ, Pham JM, Nguyen T, Gong AZ, Flores J, Trauner D, Sellmyer MA | Nature communications | 41453904 | Nat Commun | 2025 Dec 27 | https://www.ncbi.nlm.nih.gov/pubmed/41453904 |
| First-in-Human Biodistribution and Dosimetry of [(11)C]Trimethoprim. | Young AJ, Doot RK, Cho JK, Pham JM, Ordonez AA, Del Castillo AF, Dominguez TL, Dugyala S, Schubert EK, Lee H, Pantel AR, Mach RH, Mankoff DA, Sellmyer MA | Molecular imaging and biology | 41275068 | Mol Imaging Biol | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41275068 |
| Regulation of eDHFR-tagged proteins with trimethoprim PROTACs. | Etersque JM, Lee IK, Sharma N, Xu K, Ruff A, Northrup JD, Sarkar S, Nguyen T, Lauman R, Burslem GM, Sellmyer MA | Nature communications | 37923771 | Nat Commun | 2023 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/37923771 |
| Monitoring mRNA vaccine antigen expression in vivo using PET/CT. | Blizard GS, Dwivedi G, Pan YG, Hou C, Etersque JM, Said H, Chevrier A, Lavertu M, Ni H, Davis B, Tam Y, Cao Q, Mach RH, Weissman D, Alameh MG, Sellmyer MA | Nature communications | 40044669 | Nat Commun | 2025 Mar 6 | https://www.ncbi.nlm.nih.gov/pubmed/40044669 |
| Visualizing Bacterial Infections With Novel Targeted Molecular Imaging Approaches. | Chen X, Gallagher F, Sellmyer MA, Ordonez AA, Kjaer A, Ohliger M, Wilson DM, Jain SK | The Journal of infectious diseases | 37788506 | J Infect Dis | 2023 Oct 3 | https://www.ncbi.nlm.nih.gov/pubmed/37788506 |
| Imaging CAR T Cell Trafficking with eDHFR as a PET Reporter Gene. | Sellmyer MA, Richman SA, Lohith K, Hou C, Weng CC, Mach RH, O'Connor RS, Milone MC, Farwell MD | Molecular therapy : the journal of the American Society of Gene Therapy | 31668558 | Mol Ther | 2020 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/31668558 |
| Monitoring Therapeutic Response to Anti-FAP CAR T Cells Using [18F]AlF-FAPI-74. | Lee IK, Noguera-Ortega E, Xiao Z, Todd L, Scholler J, Song D, Liousia M, Lohith K, Xu K, Edwards KJ, Farwell MD, June CH, Albelda SM, Puré E, Sellmyer MA | Clinical cancer research : an official journal of the American Association for Cancer Research | 35972732 | Clin Cancer Res | 2022 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/35972732 |
| A genetically encoded protein tag for control and quantitative imaging of CAR T cell therapy. | Lee IK, Sharma N, Noguera-Ortega E, Liousia M, Baroja ML, Etersque JM, Pham J, Sarkar S, Carreno BM, Linette GP, Puré E, Albelda SM, Sellmyer MA | Molecular therapy : the journal of the American Society of Gene Therapy | 37919903 | Mol Ther | 2023 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/37919903 |
| Augmented Acyl-CoA Biosynthesis Promotes Resistance to TEAD Palmitoylation Site Inhibition. | Nutsch K, Trujillo MN, Song L, Erb MA, Chen JJ, Galligan JJ, Bollong MJ | ACS chemical biology | 40179049 | ACS Chem Biol | 2025 Apr 18 | https://www.ncbi.nlm.nih.gov/pubmed/40179049 |
| Chemical Inhibition of ENL/AF9 YEATS Domains in Acute Leukemia. | Garnar-Wortzel L, Bishop TR, Kitamura S, Milosevich N, Asiaban JN, Zhang X, Zheng Q, Chen E, Ramos AR, Ackerman CJ, Hampton EN, Chatterjee AK, Young TS, Hull MV, Sharpless KB, Cravatt BF, Wolan DW, Erb MA | ACS central science | 34079898 | ACS Cent Sci | 2021 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/34079898 |
| Collateral lethality between HDAC1 and HDAC2 exploits cancer-specific NuRD complex vulnerabilities. | Zhang Y, Remillard D, Onubogu U, Karakyriakou B, Asiaban JN, Ramos AR, Bowland K, Bishop TR, Barta PA, Nance S, Durbin AD, Ott CJ, Janiszewska M, Cravatt BF, Erb MA | Nature structural & molecular biology | 37488358 | Nat Struct Mol Biol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37488358 |
| Redirecting the pioneering function of FOXA1 with covalent small molecules. | Won SJ, Zhang Y, Reinhardt CJ, Hargis LM, MacRae NS, DeMeester KE, Njomen E, Remsberg JR, Melillo B, Cravatt BF, Erb MA | Molecular cell | 39413792 | Mol Cell | 2024 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/39413792 |
| Acetyl-CoA biosynthesis drives resistance to histone acetyltransferase inhibition. | Bishop TR, Subramanian C, Bilotta EM, Garnar-Wortzel L, Ramos AR, Zhang Y, Asiaban JN, Ott CJ, Rock CO, Erb MA | Nature chemical biology | 37127754 | Nat Chem Biol | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37127754 |
| SuFEx-based chemical diversification for the systematic discovery of CRBN molecular glues. | Carter TR, Milosevich N, Dada L, Shaum JB, Barry Sharpless K, Kitamura S, Erb MA | Bioorganic & medicinal chemistry | 38608634 | Bioorg Med Chem | 2024 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/38608634 |
| Pharmacological Modulation of Transcriptional Coregulators in Cancer. | Bishop TR, Zhang Y, Erb MA | Trends in pharmacological sciences | 31078321 | Trends Pharmacol Sci | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31078321 |
| Cell-Based Ligand Discovery for the ENL YEATS Domain. | Asiaban JN, Milosevich N, Chen E, Bishop TR, Wang J, Zhang Y, Ackerman CJ, Hampton EN, Young TS, Hull MV, Cravatt BF, Erb MA | ACS chemical biology | 32176478 | ACS Chem Biol | 2020 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/32176478 |
| A chemical-genetic interaction between PAF1 and ENL/AF9 YEATS inhibition. | Barta PA, Garnar-Wortzel L, Bishop TR, Hayward RE, Hargis LM, Shaum JB, Kwok HS, Liau BB, Cravatt BF, Erb MA | RSC chemical biology | 41142648 | RSC Chem Biol | 2026 Jan 14 | https://www.ncbi.nlm.nih.gov/pubmed/41142648 |
| Small-molecule tools for YEATS domain proteins. | Erb MA | Current opinion in chemical biology | 37924571 | Curr Opin Chem Biol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37924571 |
| Genome-scale CRISPR screening in a single mouse liver. | Keys HR, Knouse KA | Cell genomics | 36643909 | Cell Genom | 2022 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/36643909 |
| Quiescent Cells Actively Replenish CENP-A Nucleosomes to Maintain Centromere Identity and Proliferative Potential. | Swartz SZ, McKay LS, Su KC, Bury L, Padeganeh A, Maddox PS, Knouse KA, Cheeseman IM | Developmental cell | 31422918 | Dev Cell | 2019 Oct 7 | https://www.ncbi.nlm.nih.gov/pubmed/31422918 |
| Tom70-based transcriptional regulation of mitochondrial biogenesis and aging. | Liu Q, Chang CE, Wooldredge AC, Fong B, Kennedy BK, Zhou C | eLife | 35234609 | Elife | 2022 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/35234609 |
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| Nascent mitochondrial proteins initiate the localized condensation of cytosolic protein aggregates on the mitochondrial surface. | Liu Q, Fong B, Yoo S, Unruh JR, Guo F, Yu Z, Chen J, Si K, Li R, Zhou C | Proceedings of the National Academy of Sciences of the United States of America | 37494397 | Proc Natl Acad Sci U S A | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37494397 |
| Proteome plasticity in response to persistent environmental change. | Domnauer M, Zheng F, Li L, Zhang Y, Chang CE, Unruh JR, Conkright-Fincham J, McCroskey S, Florens L, Zhang Y, Seidel C, Fong B, Schilling B, Sharma R, Ramanathan A, Si K, Zhou C | Molecular cell | 34293321 | Mol Cell | 2021 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/34293321 |
| Metabolic environment-driven remodeling of mitochondrial ribosomes regulates translation and biogenesis. | Zheng F, Yu Z, Zhuang J, Vannur L, Nickols W, Wang Y, Li L, Tan SJO, Yoo S, Cheng Y, Zhou C | Molecular cell | 41202813 | Mol Cell | 2025 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/41202813 |
| Modern methods for laboratory diversification of biomolecules. | Bratulic S, Badran AH | Current opinion in chemical biology | 29096324 | Curr Opin Chem Biol | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29096324 |
| Clinically relevant mutations in core metabolic genes confer antibiotic resistance. | Lopatkin AJ, Bening SC, Manson AL, Stokes JM, Kohanski MA, Badran AH, Earl AM, Cheney NJ, Yang JH, Collins JJ | Science (New York, N.Y.) | 33602825 | Science | 2021 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/33602825 |
| Directed evolution of rRNA improves translation kinetics and recombinant protein yield. | Liu F, Bratulić S, Costello A, Miettinen TP, Badran AH | Nature communications | 34561441 | Nat Commun | 2021 Sep 24 | https://www.ncbi.nlm.nih.gov/pubmed/34561441 |
| Natural and engineered precision antibiotics in the context of resistance. | Johnston CW, Badran AH | Current opinion in chemical biology | 35660248 | Curr Opin Chem Biol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35660248 |
| Multiplex suppression of four quadruplet codons via tRNA directed evolution. | DeBenedictis EA, Carver GD, Chung CZ, Söll D, Badran AH | Nature communications | 34588441 | Nat Commun | 2021 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/34588441 |
| Bacterial translation machinery for deliberate mistranslation of the genetic code. | Vargas-Rodriguez O, Badran AH, Hoffman KS, Chen M, Crnković A, Ding Y, Krieger JR, Westhof E, Söll D, Melnikov S | Proceedings of the National Academy of Sciences of the United States of America | 34413202 | Proc Natl Acad Sci U S A | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/34413202 |
| Orthogonal translation enables heterologous ribosome engineering in E. coli. | Kolber NS, Fattal R, Bratulic S, Carver GD, Badran AH | Nature communications | 33500394 | Nat Commun | 2021 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/33500394 |
| A Deep Learning Approach to Antibiotic Discovery. | Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, Church GM, Brown ED, Jaakkola TS, Barzilay R, Collins JJ | Cell | 32084340 | Cell | 2020 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/32084340 |
| Synthetic Biological Circuits within an Orthogonal Central Dogma. | Costello A, Badran AH | Trends in biotechnology | 32586633 | Trends Biotechnol | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32586633 |
| Efficient genetic code expansion without host genome modifications. | Costello A, Peterson AA, Lanster DL, Li Z, Carver GD, Badran AH | Nature biotechnology | 39261591 | Nat Biotechnol | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39261591 |
| Continuous bioactivity-dependent evolution of an antibiotic biosynthetic pathway. | Johnston CW, Badran AH, Collins JJ | Nature communications | 32826900 | Nat Commun | 2020 Aug 21 | https://www.ncbi.nlm.nih.gov/pubmed/32826900 |
| Chromatin Hyperacetylation Impacts Chromosome Folding by Forming a Nuclear Subcompartment. | Rosencrance CD, Ammouri HN, Yu Q, Ge T, Rendleman EJ, Marshall SA, Eagen KP | Molecular cell | 32243828 | Mol Cell | 2020 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/32243828 |
| EZH2 synergizes with BRD4-NUT to drive NUT carcinoma growth through silencing of key tumor suppressor genes. | Huang Y, Durall RT, Luong NM, Hertzler HJ, Huang J, Gokhale PC, Leeper BA, Persky NS, Root DE, Anekal PV, Montero Llopis PDLM, David CN, Kutok JL, Raimondi A, Saluja K, Luo J, Zahnow CA, Adane B, Stegmaier K, Hawkins CE, Ponne C, Le Q, Shapiro GI, Lemieux ME, Eagen KP, French CA | bioRxiv : the preprint server for biology | 37645799 | bioRxiv | 2023 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/37645799 |
| The BRD4-NUT Fusion Alone Drives Malignant Transformation of NUT Carcinoma. | Durall RT, Huang J, Wojenski L, Huang Y, Gokhale PC, Leeper BA, Nash JO, Ballester PL, Davidson S, Shlien A, Sotirakis E, Bertaux F, Dubus V, Luo J, Wu CJ, Keskin DB, Eagen KP, Shapiro GI, French CA | Cancer research | 37819236 | Cancer Res | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37819236 |
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| BET proteins loop and compartmentalize the 3D genome. | Eagen KP | Nature genetics | 35410382 | Nat Genet | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35410382 |
| Principles of Chromosome Architecture Revealed by Hi-C. | Eagen KP | Trends in biochemical sciences | 29685368 | Trends Biochem Sci | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29685368 |
| Contact Mapping to Unravel Chromosome Folding. | Ge T, Rosencrance CD, Eagen KP | Trends in biochemical sciences | 31677956 | Trends Biochem Sci | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31677956 |
| Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation. | Fang C, Wang Z, Han C, Safgren SL, Helmin KA, Adelman ER, Serafin V, Basso G, Eagen KP, Gaspar-Maia A, Figueroa ME, Singer BD, Ratan A, Ntziachristos P, Zang C | Genome biology | 32933554 | Genome Biol | 2020 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/32933554 |
| UBR7 acts as a histone chaperone for post-nucleosomal histone H3. | Hogan AK, Sathyan KM, Willis AB, Khurana S, Srivastava S, Zasadzińska E, Lee AS, Bailey AO, Gaynes MN, Huang J, Bodner J, Rosencrance CD, Wong KA, Morgan MA, Eagen KP, Shilatifard A, Foltz DR | The EMBO journal | 34786730 | EMBO J | 2021 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/34786730 |
| EZH2 Cooperates with BRD4-NUT to Drive NUT Carcinoma Growth by Silencing Key Tumor Suppressor Genes. | Huang Y, Durall RT, Luong NM, Hertzler HJ, Huang J, Gokhale PC, Leeper BA, Persky NS, Root DE, Anekal PV, Montero Llopis PDLM, David CN, Kutok JL, Raimondi A, Saluja K, Luo J, Zahnow CA, Adane B, Stegmaier K, Hawkins CE, Ponne C, Le Q, Shapiro GI, Lemieux ME, Eagen KP, French CA | Cancer research | 37747726 | Cancer Res | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37747726 |
| Cell type-specific inference of differential expression in spatial transcriptomics. | Cable DM, Murray E, Shanmugam V, Zhang S, Zou LS, Diao M, Chen H, Macosko EZ, Irizarry RA, Chen F | Nature methods | 36050488 | Nat Methods | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36050488 |
| RNA timestamps identify the age of single molecules in RNA sequencing. | Rodriques SG, Chen LM, Liu S, Zhong ED, Scherrer JR, Boyden ES, Chen F | Nature biotechnology | 33077959 | Nat Biotechnol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33077959 |
| Spatial genomics enables multi-modal study of clonal heterogeneity in tissues. | Zhao T, Chiang ZD, Morriss JW, LaFave LM, Murray EM, Del Priore I, Meli K, Lareau CA, Nadaf NM, Li J, Earl AS, Macosko EZ, Jacks T, Buenrostro JD, Chen F | Nature | 34912115 | Nature | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34912115 |
| Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution. | Rodriques SG, Stickels RR, Goeva A, Martin CA, Murray E, Vanderburg CR, Welch J, Chen LM, Chen F, Macosko EZ | Science (New York, N.Y.) | 30923225 | Science | 2019 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/30923225 |
| Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. | Mangiameli SM, Chen H, Earl AS, Dobkin JA, Lesman D, Buenrostro JD, Chen F | Nature methods | 37106232 | Nat Methods | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37106232 |
| Helicase-assisted continuous editing for programmable mutagenesis of endogenous genomes. | Chen XD, Chen Z, Wythes G, Zhang Y, Orr BC, Sun G, Chao YK, Navarro Torres A, Thao K, Vallurupalli M, Sun J, Borji M, Tkacik E, Chen H, Bernstein BE, Chen F | Science (New York, N.Y.) | 39388570 | Science | 2024 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/39388570 |
| Detection of allele-specific expression in spatial transcriptomics with spASE. | Zou LS, Cable DM, Barrera-Lopez IA, Zhao T, Murray E, Aryee MJ, Chen F, Irizarry RA | Genome biology | 38978101 | Genome Biol | 2024 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/38978101 |
| Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response. | Liu S, Iorgulescu JB, Li S, Borji M, Barrera-Lopez IA, Shanmugam V, Lyu H, Morriss JW, Garcia ZN, Murray E, Reardon DA, Yoon CH, Braun DA, Livak KJ, Wu CJ, Chen F | Immunity | 36223726 | Immunity | 2022 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/36223726 |
| Programmable eukaryotic protein synthesis with RNA sensors by harnessing ADAR. | Jiang K, Koob J, Chen XD, Krajeski RN, Zhang Y, Volf V, Zhou W, Sgrizzi SR, Villiger L, Gootenberg JS, Chen F, Abudayyeh OO | Nature biotechnology | 36302988 | Nat Biotechnol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36302988 |
| Molecular logic of cellular diversification in the mouse cerebral cortex. | Di Bella DJ, Habibi E, Stickels RR, Scalia G, Brown J, Yadollahpour P, Yang SM, Abbate C, Biancalani T, Macosko EZ, Chen F, Regev A, Arlotta P | Nature | 34163074 | Nature | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34163074 |
| Compressed sensing for highly efficient imaging transcriptomics. | Cleary B, Simonton B, Bezney J, Murray E, Alam S, Sinha A, Habibi E, Marshall J, Lander ES, Chen F, Regev A | Nature biotechnology | 33859401 | Nat Biotechnol | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33859401 |
| Robust decomposition of cell type mixtures in spatial transcriptomics. | Cable DM, Murray E, Zou LS, Goeva A, Macosko EZ, Chen F, Irizarry RA | Nature biotechnology | 33603203 | Nat Biotechnol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33603203 |
| Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumor growth and metastasis. | Jones MG, Sun D, Min KHJ, Colgan WN, Tian L, Weir JA, Chen VZ, Koblan LW, Yost KE, Mathey-Andrews N, Russell AJC, Stickels RR, Balderrama KS, Rideout WM 3rd, Chang HY, Jacks T, Chen F, Weissman JS, Yosef N, Yang D | bioRxiv : the preprint server for biology | 39484491 | bioRxiv | 2024 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/39484491 |
| Scalable spatial transcriptomics through computational array reconstruction. | Hu C, Borji M, Marrero GJ, Kumar V, Weir JA, Kammula SV, Macosko EZ, Chen F | Nature biotechnology | 40181168 | Nat Biotechnol | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40181168 |
| Generative Design of Cell Type-Specific RNA Splicing Elements for Programmable Gene Regulation. | Chen XD, Jim M, Vallurupalli M, Cao K, Torres AN, Leong JW, Zhang Y, Wollensak D, Gong Q, Sun J, Borji M, Schor G, Mrowka S, Hu M, Laumas A, Roth JA, Golub T, Chen F | bioRxiv : the preprint server for biology | 41279721 | bioRxiv | 2025 Nov 5 | https://www.ncbi.nlm.nih.gov/pubmed/41279721 |
| HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes. | Marshall JL, Doughty BR, Subramanian V, Guckelberger P, Wang Q, Chen LM, Rodriques SG, Zhang K, Fulco CP, Nasser J, Grinkevich EJ, Noel T, Mangiameli S, Bergman DT, Greka A, Lander ES, Chen F, Engreitz JM | Proceedings of the National Academy of Sciences of the United States of America | 33376219 | Proc Natl Acad Sci U S A | 2020 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/33376219 |
| In situ genome sequencing resolves DNA sequence and structure in intact biological samples. | Payne AC, Chiang ZD, Reginato PL, Mangiameli SM, Murray EM, Yao CC, Markoulaki S, Earl AS, Labade AS, Jaenisch R, Church GM, Boyden ES, Buenrostro JD, Chen F | Science (New York, N.Y.) | 33384301 | Science | 2021 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/33384301 |
| Efficient, continuous mutagenesis in human cells using a pseudo-random DNA editor. | Chen H, Liu S, Padula S, Lesman D, Griswold K, Lin A, Zhao T, Marshall JL, Chen F | Nature biotechnology | 31844291 | Nat Biotechnol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31844291 |
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| Using Radiation Therapy to Prime and Propagate an Anti-tumor Immune Response Against Brain Tumors. | Onate AJ, Clark PA, Morris ZS | Neuromolecular medicine | 34081276 | Neuromolecular Med | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34081276 |
| Radiation Augments the Local Anti-Tumor Effect of In Situ Vaccine With CpG-Oligodeoxynucleotides and Anti-OX40 in Immunologically Cold Tumor Models. | Pieper AA, Zangl LM, Speigelman DV, Feils AS, Hoefges A, Jagodinsky JC, Felder MA, Tsarovsky NW, Arthur IS, Brown RJ, Birstler J, Le T, Carlson PM, Bates AM, Hank JA, Rakhmilevich AL, Erbe AK, Sondel PM, Patel RB, Morris ZS | Frontiers in immunology | 34868010 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34868010 |
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| Transcriptional-mediated effects of radiation on the expression of immune susceptibility markers in melanoma. | Werner LR, Kler JS, Gressett MM, Riegert M, Werner LK, Heinze CM, Kern JG, Abbariki M, Erbe AK, Patel RB, Sriramaneni RN, Harari PM, Morris ZS | Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology | 28893414 | Radiother Oncol | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28893414 |
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| Tumor-Specific Inhibition of In Situ Vaccination by Distant Untreated Tumor Sites. | Morris ZS, Guy EI, Werner LR, Carlson PM, Heinze CM, Kler JS, Busche SM, Jaquish AA, Sriramaneni RN, Carmichael LL, Loibner H, Gillies SD, Korman AJ, Erbe AK, Hank JA, Rakhmilevich AL, Harari PM, Sondel PM | Cancer immunology research | 29748391 | Cancer Immunol Res | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29748391 |
| Multifunctional nanoparticle potentiates the in situ vaccination effect of radiation therapy and enhances response to immune checkpoint blockade. | Zhang Y, Sriramaneni RN, Clark PA, Jagodinsky JC, Ye M, Jin W, Wang Y, Bates A, Kerr CP, Le T, Allawi R, Wang X, Xie R, Havighurst TC, Chakravarty I, Rakhmilevich AL, O'Leary KA, Schuler LA, Sondel PM, Kim K, Gong S, Morris ZS | Nature communications | 35999216 | Nat Commun | 2022 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/35999216 |
| Local TLR4 stimulation augments in situ vaccination induced via local radiation and anti-CTLA-4 checkpoint blockade through induction of CD8 T-cell independent Th1 polarization. | Jagodinsky JC, Bates AM, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarty I, Nystuen EJ, Kim K, Sondel PM, Jin WJ, Morris ZS | Journal for immunotherapy of cancer | 36192087 | J Immunother Cancer | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36192087 |
| In situ Vaccine Plus Checkpoint Blockade Induces Memory Humoral Response. | Baniel CC, Heinze CM, Hoefges A, Sumiec EG, Hank JA, Carlson PM, Jin WJ, Patel RB, Sriramaneni RN, Gillies SD, Erbe AK, Schwarz CN, Pieper AA, Rakhmilevich AL, Sondel PM, Morris ZS | Frontiers in immunology | 32849544 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32849544 |
| Priming and Propagating Anti-tumor Immunity: Focal Hypofractionated Radiation for in Situ Vaccination and Systemic Targeted Radionuclide Theranostics for Immunomodulation of Tumor Microenvironments. | Jagodinsky JC, Morris ZS | Seminars in radiation oncology | 32381297 | Semin Radiat Oncol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32381297 |
| Combination of radiation therapy, bempegaldesleukin, and checkpoint blockade eradicates advanced solid tumors and metastases in mice. | Pieper AA, Rakhmilevich AL, Spiegelman DV, Patel RB, Birstler J, Jin WJ, Carlson PM, Charych DH, Hank JA, Erbe AK, Overwijk WW, Morris ZS, Sondel PM | Journal for immunotherapy of cancer | 34172518 | J Immunother Cancer | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34172518 |
| Depth of tumor implantation affects response to in situ vaccination in a syngeneic murine melanoma model. | Carlson PM, Mohan M, Rodriguez M, Subbotin V, Sun CX, Patel RB, Birstler J, Hank JA, Rakhmilevich AL, Morris ZS, Erbe AK, Sondel PM | Journal for immunotherapy of cancer | 33858849 | J Immunother Cancer | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33858849 |
| Low-Dose Radiation Potentiates the Propagation of Anti-Tumor Immunity against Melanoma Tumor in the Brain after In Situ Vaccination at a Tumor outside the Brain. | Clark PA, Sriramaneni RN, Bates AM, Jin WJ, Jagodinsky JC, Hernandez R, Le T, Jeffery JJ, Marsh IR, Grudzinski JJ, Aluicio-Sarduy E, Barnhart TE, Anderson BR, Chakravarty I, Arthur IS, Kim K, Engle JW, Bednarz BP, Weichert JP, Morris ZS | Radiation research | 33826741 | Radiat Res | 2021 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/33826741 |
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| A multipurpose brachytherapy catheter to enable intratumoral injection. | Jagodinsky JC, Medeiros G, Raj HH, Razuan A, Locsin A, Dempsey TG, Tang B, Chakravarty I, Clark PA, Sriramaneni RN, Jin WJ, Lan KH, Das RK, Miller JR, Suarez-Gonzalez D, Morris ZS | Brachytherapy | 33785280 | Brachytherapy | 2021 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/33785280 |
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| Tumor-Specific Antibody, Cetuximab, Enhances the In Situ Vaccine Effect of Radiation in Immunologically Cold Head and Neck Squamous Cell Carcinoma. | Jin WJ, Erbe AK, Schwarz CN, Jaquish AA, Anderson BR, Sriramaneni RN, Jagodinsky JC, Bates AM, Clark PA, Le T, Lan KH, Chen Y, Kim K, Morris ZS | Frontiers in immunology | 33281820 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33281820 |
| Combined innate and adaptive immunotherapy overcomes resistance of immunologically cold syngeneic murine neuroblastoma to checkpoint inhibition. | Voeller J, Erbe AK, Slowinski J, Rasmussen K, Carlson PM, Hoefges A, VandenHeuvel S, Stuckwisch A, Wang X, Gillies SD, Patel RB, Farrel A, Rokita JL, Maris J, Hank JA, Morris ZS, Rakhmilevich AL, Sondel PM | Journal for immunotherapy of cancer | 31810498 | J Immunother Cancer | 2019 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/31810498 |
| (90)Y-NM600 targeted radionuclide therapy induces immunologic memory in syngeneic models of T-cell Non-Hodgkin's Lymphoma. | Hernandez R, Walker KL, Grudzinski JJ, Aluicio-Sarduy E, Patel R, Zahm CD, Pinchuk AN, Massey CF, Bitton AN, Brown RJ, Sondel PM, Morris ZS, Engle JW, Capitini CM, Weichert JP | Communications biology | 30820474 | Commun Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30820474 |
| Combining brachytherapy and immunotherapy to achieve in situ tumor vaccination: A review of cooperative mechanisms and clinical opportunities. | Patel RB, Baniel CC, Sriramaneni RN, Bradley K, Markovina S, Morris ZS | Brachytherapy | 30078541 | Brachytherapy | 2018 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/30078541 |
| MRI-Guided Radiation Therapy. | Lee SL, Hall WA, Morris ZS, Christensen L, Bassetti M | Advances in oncology | 37064601 | Adv Oncol | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/37064601 |
| ATM inhibition augments type I interferon response and antitumor T-cell immunity when combined with radiation therapy in murine tumor models. | Jin WJ, Zangl LM, Hyun M, Massoud E, Schroeder K, Alexandridis RA, Morris ZS | Journal for immunotherapy of cancer | 37730275 | J Immunother Cancer | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37730275 |
| Development of an In Situ Cancer Vaccine via Combinational Radiation and Bacterial-Membrane-Coated Nanoparticles. | Patel RB, Ye M, Carlson PM, Jaquish A, Zangl L, Ma B, Wang Y, Arthur I, Xie R, Brown RJ, Wang X, Sriramaneni R, Kim K, Gong S, Morris ZS | Advanced materials (Deerfield Beach, Fla.) | 31523868 | Adv Mater | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31523868 |
| Low-dose targeted radionuclide therapy renders immunologically cold tumors responsive to immune checkpoint blockade. | Patel RB, Hernandez R, Carlson P, Grudzinski J, Bates AM, Jagodinsky JC, Erbe A, Marsh IR, Arthur I, Aluicio-Sarduy E, Sriramaneni RN, Jin WJ, Massey C, Rakhmilevich AL, Vail D, Engle JW, Le T, Kim K, Bednarz B, Sondel PM, Weichert J, Morris ZS | Science translational medicine | 34261797 | Sci Transl Med | 2021 Jul 14 | https://www.ncbi.nlm.nih.gov/pubmed/34261797 |
| Combination of Bempegaldesleukin and Anti-CTLA-4 Prevents Metastatic Dissemination After Primary Resection or Radiotherapy in a Preclinical Model of Non-Small Cell Lung Cancer. | Bates AM, Brown RJ, Pieper AA, Zangl LM, Arthur I, Carlson PM, Le T, Sosa GA, Clark PA, Sriramaneni RN, Kim K, Patel RB, Morris ZS | Frontiers in oncology | 33937052 | Front Oncol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33937052 |
| Temporal analysis of type 1 interferon activation in tumor cells following external beam radiotherapy or targeted radionuclide therapy. | Jagodinsky JC, Jin WJ, Bates AM, Hernandez R, Grudzinski JJ, Marsh IR, Chakravarty I, Arthur IS, Zangl LM, Brown RJ, Nystuen EJ, Emma SE, Kerr C, Carlson PM, Sriramaneni RN, Engle JW, Aluicio-Sarduy E, Barnhart TE, Le T, Kim K, Bednarz BP, Weichert JP, Patel RB, Morris ZS | Theranostics | 33995649 | Theranostics | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33995649 |
| Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade. | Jagodinsky JC, Vera JM, Jin WJ, Shea AG, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarthy I, Allawi RH, Kim K, Harari PM, Sondel PM, Newton MA, Crittenden MR, Gough MJ, Miller JR, Ong IM, Morris ZS | Science translational medicine | 39292804 | Sci Transl Med | 2024 Sep 18 | https://www.ncbi.nlm.nih.gov/pubmed/39292804 |
| In Situ Vaccination Following Intratumoral Injection of IL2 and Poly-l-lysine/Iron Oxide/CpG Nanoparticles to a Radiated Tumor Site. | Zhang Y, Rahman MM, Clark PA, Sriramaneni RN, Havighurst T, Kerr CP, Zhu M, Jones J, Wang X, Kim K, Gong S, Morris ZS | ACS nano | 37216491 | ACS Nano | 2023 Jun 13 | https://www.ncbi.nlm.nih.gov/pubmed/37216491 |
| Antibody landscape of C57BL/6 mice cured of B78 melanoma via a combined radiation and immunocytokine immunotherapy regimen. | Hoefges A, McIlwain SJ, Erbe AK, Mathers N, Xu A, Melby D, Tetreault K, Le T, Kim K, Pinapati RS, Garcia BH, Patel J, Heck M, Feils AS, Tsarovsky N, Hank JA, Morris ZS, Ong IM, Sondel PM | Frontiers in immunology | 38077403 | Front Immunol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38077403 |
| Response to vocal music in Angelman syndrome contrasts with Prader-Willi syndrome. | Kotler J, Mehr SA, Egner A, Haig D, Krasnow MM | Evolution and human behavior : official journal of the Human Behavior and Evolution Society | 32655274 | Evol Hum Behav | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32655274 |
| Acoustic regularities in infant-directed speech and song across cultures. | Hilton CB, Moser CJ, Bertolo M, Lee-Rubin H, Amir D, Bainbridge CM, Simson J, Knox D, Glowacki L, Alemu E, Galbarczyk A, Jasienska G, Ross CT, Neff MB, Martin A, Cirelli LK, Trehub SE, Song J, Kim M, Schachner A, Vardy TA, Atkinson QD, Salenius A, Andelin J, Antfolk J, Madhivanan P, Siddaiah A, Placek CD, Salali GD, Keestra S, Singh M, Collins SA, Patton JQ, Scaff C, Stieglitz J, Cutipa SC, Moya C, Sagar RR, Anyawire M, Mabulla A, Wood BM, Krasnow MM, Mehr SA | Nature human behaviour | 35851843 | Nat Hum Behav | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35851843 |
| Form and Function in Human Song. | Mehr SA, Singh M, York H, Glowacki L, Krasnow MM | Current biology : CB | 29395919 | Curr Biol | 2018 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/29395919 |
| Toward a productive evolutionary understanding of music. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 34588071 | Behav Brain Sci | 2021 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/34588071 |
| Sound-induced motion in chimpanzees does not imply shared ancestry for music or dance. | Bertolo M, Singh M, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 33443199 | Proc Natl Acad Sci U S A | 2021 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/33443199 |
| Developmental psychologists should adopt citizen science to improve generalization and reproducibility. | Li W, Germine LT, Mehr SA, Srinivasan M, Hartshorne J | Infant and child development | 38515737 | Infant Child Dev | 2024 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/38515737 |
| Children infer the behavioral contexts of unfamiliar foreign songs. | Hilton CB, Crowley-de Thierry L, Yan R, Martin A, Mehr SA | Journal of experimental psychology. General | 36222671 | J Exp Psychol Gen | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36222671 |
| Across demographics and recent history, most parents sing to their infants and toddlers daily. | Yan R, Jessani G, Spelke ES, de Villiers P, de Villiers J, Mehr SA | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 34719251 | Philos Trans R Soc Lond B Biol Sci | 2021 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/34719251 |
| Citizen science can help to alleviate the generalizability crisis. | Hilton CB, Mehr SA | The Behavioral and brain sciences | 35139973 | Behav Brain Sci | 2022 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/35139973 |
| Cross-Cultural Work in Music Cognition: Challenges, Insights, and Recommendations. | Jacoby N, Margulis EH, Clayton M, Hannon E, Honing H, Iversen J, Klein TR, Mehr SA, Pearson L, Peretz I, Perlman M, Polak R, Ravignani A, Savage PE, Steingo G, Stevens CJ, Trainor L, Trehub S, Veal M, Wald-Fuhrmann M | Music perception | 36936548 | Music Percept | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36936548 |
| Universality and diversity in human song. | Mehr SA, Singh M, Knox D, Ketter DM, Pickens-Jones D, Atwood S, Lucas C, Jacoby N, Egner AA, Hopkins EJ, Howard RM, Hartshorne JK, Jennings MV, Simson J, Bainbridge CM, Pinker S, O'Donnell TJ, Krasnow MM, Glowacki L | Science (New York, N.Y.) | 31753969 | Science | 2019 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/31753969 |
| Language experience predicts music processing in a half-million speakers of fifty-four languages. | Liu J, Hilton CB, Bergelson E, Mehr SA | Current biology : CB | 40245864 | Curr Biol | 2025 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/40245864 |
| Sight-over-sound judgments of music performances are replicable effects with limited interpretability. | Mehr SA, Scannell DA, Winner E | PloS one | 30183719 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30183719 |
| The ability to predict actions of others from distributed cues is still developing in 6- to 8-year-old children. | McMahon E, Kim D, Mehr SA, Nakayama K, Spelke ES, Vaziri-Pashkam M | Journal of vision | 34003244 | J Vis | 2021 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/34003244 |
| Infants relax in response to unfamiliar foreign lullabies. | Bainbridge CM, Bertolo M, Youngers J, Atwood S, Yurdum L, Simson J, Lopez K, Xing F, Martin A, Mehr SA | Nature human behaviour | 33077883 | Nat Hum Behav | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33077883 |
| Online Developmental Science to Foster Innovation, Access, and Impact. | Sheskin M, Scott K, Mills CM, Bergelson E, Bonawitz E, Spelke ES, Fei-Fei L, Keil FC, Gweon H, Tenenbaum JB, Jara-Ettinger J, Adolph KE, Rhodes M, Frank MC, Mehr SA, Schulz L | Trends in cognitive sciences | 32624386 | Trends Cogn Sci | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32624386 |
| Music, a piece of many puzzles in developmental science. | Mehr SA, Bortfeld H | Developmental science | 37501524 | Dev Sci | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37501524 |
| Spectro-temporal acoustical markers differentiate speech from song across cultures. | Albouy P, Mehr SA, Hoyer RS, Ginzburg J, Du Y, Zatorre RJ | Nature communications | 38844457 | Nat Commun | 2024 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/38844457 |
| Ecological Momentary Assessment Reveals Causal Effects of Music Enrichment on Infant Mood. | Cho E, Yurdum L, Ebinne E, Hilton CB, Lai E, Bertolo M, Brown P, Milosh B, Sened H, Tamir DI, Mehr SA | Child development | 40432545 | Child Dev | 2025 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/40432545 |
| Origins of music in credible signaling. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 32843107 | Behav Brain Sci | 2020 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/32843107 |
| Core systems of music perception. | Mehr SA | Trends in cognitive sciences | 40517090 | Trends Cogn Sci | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40517090 |
| How games can make behavioural science better. | Long B, Simson J, Buxó-Lugo A, Watson DG, Mehr SA | Nature | 36650244 | Nature | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36650244 |
| Language experience predicts music processing in a half-million speakers of fifty-four languages. | Liu J, Hilton CB, Bergelson E, Mehr SA | Current biology : CB | 37105166 | Curr Biol | 2023 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/37105166 |
| Expectancy Effects Threaten the Inferential Validity of Synchrony-Prosociality Research. | Atwood S, Schachner A, Mehr SA | Open mind : discoveries in cognitive science | 36891035 | Open Mind (Camb) | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36891035 |
| Universal interpretations of vocal music. | Yurdum L, Singh M, Glowacki L, Vardy T, Atkinson QD, Hilton CB, Sauter D, Krasnow MM, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 37676911 | Proc Natl Acad Sci U S A | 2023 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/37676911 |
| The presence of fear: How subjective fear, not physiological changes, shapes the experience of presence. | Maymon CN, Crawford MT, Blackburne K, Botes A, Carnegie K, Mehr SA, Meier J, Murphy J, Miles NL, Robinson K, Tooley M, Grimshaw GM | Journal of experimental psychology. General | 38635168 | J Exp Psychol Gen | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38635168 |
| Implications of Changes in Medicare Payment and Documentation for Primary Care Spending and Time Use. | Basu S, Song Z, Phillips RS, Bitton A, Landon BE | Journal of general internal medicine | 32495087 | J Gen Intern Med | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32495087 |
| Health Care Spending And Use Among People Experiencing Unstable Housing In The Era Of Accountable Care Organizations. | Koh KA, Racine M, Gaeta JM, Goldie J, Martin DP, Bock B, Takach M, O'Connell JJ, Song Z | Health affairs (Project Hope) | 32011951 | Health Aff (Millwood) | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32011951 |
| Physician Practice Pattern Variations in Common Clinical Scenarios Within 5 US Metropolitan Areas. | Song Z, Kannan S, Gambrel RJ, Marino M, Vaduganathan M, Clapp MA, Seiglie JA, Bloom PP, Malik AN, Resnick MJ | JAMA health forum | 35977237 | JAMA Health Forum | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35977237 |
| Geographic Variation in Private Equity Penetration Across Select Office-Based Physician Specialties in the US. | Singh Y, Zhu JM, Polsky D, Song Z | JAMA health forum | 35977319 | JAMA Health Forum | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35977319 |
| Characteristics of Private Equity-Owned Hospitals in 2018. | Bruch J, Zeltzer D, Song Z | Annals of internal medicine | 32986485 | Ann Intern Med | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32986485 |
| Expansion of Private Equity Involvement in Women's Health Care. | Bruch JD, Borsa A, Song Z, Richardson SS | JAMA internal medicine | 32833005 | JAMA Intern Med | 2020 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/32833005 |
| Health Care Spending Slowed After Rhode Island Applied Affordability Standards To Commercial Insurers. | Baum A, Song Z, Landon BE, Phillips RS, Bitton A, Basu S | Health affairs (Project Hope) | 30715981 | Health Aff (Millwood) | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30715981 |
| Potential Implications of Private Equity Investments in Health Care Delivery. | Gondi S, Song Z | JAMA | 30816912 | JAMA | 2019 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/30816912 |
| Physician-initiated payment reform: a new path toward value. | Gondi S, Ferris TG, Patel KK, Song Z | The American journal of managed care | 31518092 | Am J Manag Care | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31518092 |
| Increases in Medicare Spending and Use after Private Equity Acquisition of Retina Practices. | Singh Y, Aderman CM, Song Z, Polsky D, Zhu JM | Ophthalmology | 37557920 | Ophthalmology | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37557920 |
| Making the Affordable Care Act Marketplace More Affordable. | Song Z | JAMA health forum | 36046713 | JAMA Health Forum | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/36046713 |
| Out-Of-Network Spending Mostly Declined In Privately Insured Populations With A Few Notable Exceptions From 2008 To 2016. | Song Z, Johnson W, Kennedy K, Biniek JF, Wallace J | Health affairs (Project Hope) | 32479236 | Health Aff (Millwood) | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32479236 |
| Differences in the Complexity of Office Visits by Physician Specialty: NAMCS 2013-2016. | Goodson JD, Shahbazi S, Rao K, Song Z | Journal of general internal medicine | 32157646 | J Gen Intern Med | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32157646 |
| Out-of-Network Spending on Behavioral Health, 2008-2016. | Song Z, Lillehaugen T, Busch SH, Benson NM, Wallace J | Journal of general internal medicine | 31993946 | J Gen Intern Med | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31993946 |
| Moving Beyond the Hospital. | McCarthy CP, Vaduganathan M, Song Z | Circulation | 30571513 | Circulation | 2018 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/30571513 |
| Out-of-Network Laboratory Test Spending, Utilization, and Prices in the US. | Song Z, Lillehaugen T, Wallace J | JAMA | 33904879 | JAMA | 2021 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/33904879 |
| Changes in use of low-value services during the COVID-19 pandemic. | Shahzad M, Song Z, Chernew ME, Fendrick AM | The American journal of managed care | 36374618 | Am J Manag Care | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36374618 |
| Dental Services Use: Medicare Beneficiaries Experience Immediate And Long-Term Reductions After Enrollment. | Simon L, Song Z, Barnett ML | Health affairs (Project Hope) | 36745837 | Health Aff (Millwood) | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36745837 |
| Changes in Prescription Drug and Health Care Use Over 9 Years After the Large Drug Price Increase for Colchicine. | Ly DP, Giuriato MA, Song Z | JAMA internal medicine | 37155179 | JAMA Intern Med | 2023 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/37155179 |
| Physician Payment Disparities and Access to Services-a Look Across Specialties. | Goodson JD, Shahbazi S, Song Z | Journal of general internal medicine | 31385213 | J Gen Intern Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31385213 |
| Health Reform and Utilization of High-Volume Hospitals for Complex Cancer Operations. | Loehrer AP, Chang DC, Song Z, Chang GJ | Journal of oncology practice | 29155612 | J Oncol Pract | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29155612 |
| Type 2 Myocardial Infarction and the Hospital Readmission Reduction Program. | McCarthy CP, Vaduganathan M, Singh A, Song Z, Blankstein R, Gaggin HK, Wasfy JH, Januzzi JL Jr | Journal of the American College of Cardiology | 30165988 | J Am Coll Cardiol | 2018 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/30165988 |
| Prices And Cost Sharing For Psychotherapy In Network Versus Out Of Network In The United States. | Benson NM, Song Z | Health affairs (Project Hope) | 32634359 | Health Aff (Millwood) | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32634359 |
| Changes in Hospital Income, Use, and Quality Associated With Private Equity Acquisition. | Bruch JD, Gondi S, Song Z | JAMA internal medicine | 32833006 | JAMA Intern Med | 2020 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/32833006 |
| Health Care Spending, Utilization, and Quality 8 Years into Global Payment. | Song Z, Ji Y, Safran DG, Chernew ME | The New England journal of medicine | 31314969 | N Engl J Med | 2019 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/31314969 |
| Racial Disparities in Patient-Reported Measures of Physician Cultural Competency Among Cancer Survivors in the United States. | Butler SS, Winkfield KM, Ahn C, Song Z, Dee EC, Mahal BA, Sanford NN | JAMA oncology | 31670752 | JAMA Oncol | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31670752 |
| Improving Affordability and Equity in Medicare Advantage. | Song Z, Basu S | Inquiry : a journal of medical care organization, provision and financing | 31208262 | Inquiry | 2019 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/31208262 |
| The US Affordable Care Act: Reflections and directions at the close of a decade. | McIntyre A, Song Z | PLoS medicine | 30807584 | PLoS Med | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30807584 |
| Association of Private Equity Acquisition of Physician Practices With Changes in Health Care Spending and Utilization. | Singh Y, Song Z, Polsky D, Bruch JD, Zhu JM | JAMA health forum | 36218927 | JAMA Health Forum | 2022 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/36218927 |
| Firearm Injuries In Children And Adolescents: Health And Economic Consequences Among Survivors And Family Members. | Song Z, Zubizarreta JR, Giuriato M, Koh KA, Sacks CA | Health affairs (Project Hope) | 37931194 | Health Aff (Millwood) | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37931194 |
| Changes in Out-of-Pocket Costs for US Hospital Admissions Between December and January Every Year. | Kannan S, Song Z | JAMA health forum | 37145689 | JAMA Health Forum | 2023 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/37145689 |
| Mortality Quadrupled Among Opioid-Driven Hospitalizations, Notably Within Lower-Income And Disabled White Populations. | Song Z | Health affairs (Project Hope) | 29200349 | Health Aff (Millwood) | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29200349 |
| Baby Boomers and Beds: a Demographic Challenge for the Ages. | Song Z, Ferris TG | Journal of general internal medicine | 29273896 | J Gen Intern Med | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29273896 |
| Incorporating value into physician payment and patient cost sharing. | Song Z, Navathe AS, Emanuel EJ, Volpp KG | The American journal of managed care | 29553274 | Am J Manag Care | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29553274 |
| Changes in Health Care Spending, Use, and Clinical Outcomes After Nonfatal Firearm Injuries Among Survivors and Family Members : A Cohort Study. | Song Z, Zubizarreta JR, Giuriato M, Paulos E, Koh KA | Annals of internal medicine | 35377713 | Ann Intern Med | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35377713 |
| Racial and Ethnic Disparities in Hospitalization Outcomes Among Medicare Beneficiaries During the COVID-19 Pandemic. | Song Z, Zhang X, Patterson LJ, Barnes CL, Haas DA | JAMA health forum | 35977303 | JAMA Health Forum | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35977303 |
| Evaluation of Economic and Clinical Outcomes Under Centers for Medicare & Medicaid Services Mandatory Bundled Payments for Joint Replacements. | Haas DA, Zhang X, Kaplan RS, Song Z | JAMA internal medicine | 31157819 | JAMA Intern Med | 2019 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/31157819 |
| Will Increasing Primary Care Spending Alone Save Money? | Song Z, Gondi S | JAMA | 31415068 | JAMA | 2019 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/31415068 |
| Mortality Before and After Border Wall Construction Along the US-Mexico Border, 1990-2017. | Bruch JD, Barin O, Venkataramani AS, Song Z | American journal of public health | 34197717 | Am J Public Health | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34197717 |
| Taking account of accountable care. | Song Z | Health services research | 34105147 | Health Serv Res | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34105147 |
| A Policy Framework for the Growing Influence of Private Equity in Health Care Delivery. | Cai C, Song Z | JAMA | 37052901 | JAMA | 2023 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/37052901 |
| Characterizing the modern light environment and its influence on circadian rhythms. | Khodasevich D, Tsui S, Keung D, Skene DJ, Revell V, Martinez ME | Proceedings. Biological sciences | 34284625 | Proc Biol Sci | 2021 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/34284625 |
| Guidelines for Modeling and Reporting Health Effects of Climate Change Mitigation Actions. | Hess JJ, Ranadive N, Boyer C, Aleksandrowicz L, Anenberg SC, Aunan K, Belesova K, Bell ML, Bickersteth S, Bowen K, Burden M, Campbell-Lendrum D, Carlton E, Cissé G, Cohen F, Dai H, Dangour AD, Dasgupta P, Frumkin H, Gong P, Gould RJ, Haines A, Hales S, Hamilton I, Hasegawa T, Hashizume M, Honda Y, Horton DE, Karambelas A, Kim H, Kim SE, Kinney PL, Kone I, Knowlton K, Lelieveld J, Limaye VS, Liu Q, Madaniyazi L, Martinez ME, Mauzerall DL, Milner J, Neville T, Nieuwenhuijsen M, Pachauri S, Perera F, Pineo H, Remais JV, Saari RK, Sampedro J, Scheelbeek P, Schwartz J, Shindell D, Shyamsundar P, Taylor TJ, Tonne C, Van Vuuren D, Wang C, Watts N, West JJ, Wilkinson P, Wood SA, Woodcock J, Woodward A, Xie Y, Zhang Y, Ebi KL | Environmental health perspectives | 33170741 | Environ Health Perspect | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33170741 |
| The calendar of epidemics: Seasonal cycles of infectious diseases. | Martinez ME | PLoS pathogens | 30408114 | PLoS Pathog | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/30408114 |
| Identifying optimal vaccination scenarios to reduce varicella zoster virus transmission and reactivation. | Bakker KM, Eisenberg MC, Woods RJ, Martinez ME | BMC medicine | 36209074 | BMC Med | 2022 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/36209074 |
| Benefits and Challenges in Using Seroprevalence Data to Inform Models for Measles and Rubella Elimination. | Winter AK, Martinez ME, Cutts FT, Moss WJ, Ferrari MJ, McKee A, Lessler J, Hayford K, Wallinga J, Metcalf CJE | The Journal of infectious diseases | 29562334 | J Infect Dis | 2018 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/29562334 |
| Drivers of Infectious Disease Seasonality: Potential Implications for COVID-19. | Kronfeld-Schor N, Stevenson TJ, Nickbakhsh S, Schernhammer ES, Dopico XC, Dayan T, Martinez M, Helm B | Journal of biological rhythms | 33491541 | J Biol Rhythms | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33491541 |
| A transcomplementing gene drive provides a flexible platform for laboratory investigation and potential field deployment. | López Del Amo V, Bishop AL, Sánchez C HM, Bennett JB, Feng X, Marshall JM, Bier E, Gantz VM | Nature communications | 31953404 | Nat Commun | 2020 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/31953404 |
| Active Genetic Neutralizing Elements for Halting or Deleting Gene Drives. | Xu XS, Bulger EA, Gantz VM, Klanseck C, Heimler SR, Auradkar A, Bennett JB, Miller LA, Leahy S, Juste SS, Buchman A, Akbari OS, Marshall JM, Bier E | Molecular cell | 32949493 | Mol Cell | 2020 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/32949493 |
| Small-Molecule Control of Super-Mendelian Inheritance in Gene Drives. | López Del Amo V, Leger BS, Cox KJ, Gill S, Bishop AL, Scanlon GD, Walker JA, Gantz VM, Choudhary A | Cell reports | 32610142 | Cell Rep | 2020 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/32610142 |
| Gene editing technologies and applications for insects. | Gantz VM, Akbari OS | Current opinion in insect science | 30551769 | Curr Opin Insect Sci | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30551769 |
| Super-Mendelian inheritance mediated by CRISPR-Cas9 in the female mouse germline. | Grunwald HA, Gantz VM, Poplawski G, Xu XS, Bier E, Cooper KL | Nature | 30675057 | Nature | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30675057 |
| Assessment of a Split Homing Based Gene Drive for Efficient Knockout of Multiple Genes. | Kandul NP, Liu J, Buchman A, Gantz VM, Bier E, Akbari OS | G3 (Bethesda, Md.) | 31882406 | G3 (Bethesda) | 2020 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/31882406 |
| CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. | Harvey-Samuel T, Feng X, Okamoto EM, Purusothaman DK, Leftwich PT, Alphey L, Gantz VM | bioRxiv : the preprint server for biology | 37398284 | bioRxiv | 2023 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/37398284 |
| CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. | Harvey-Samuel T, Feng X, Okamoto EM, Purusothaman DK, Leftwich PT, Alphey L, Gantz VM | Nature communications | 37985762 | Nat Commun | 2023 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/37985762 |
| Targeting double-strand break indel byproducts with secondary guide RNAs improves Cas9 HDR-mediated genome editing efficiencies. | Bodai Z, Bishop AL, Gantz VM, Komor AC | Nature communications | 35534455 | Nat Commun | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/35534455 |
| Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi. | Adolfi A, Gantz VM, Jasinskiene N, Lee HF, Hwang K, Terradas G, Bulger EA, Ramaiah A, Bennett JB, Emerson JJ, Marshall JM, Bier E, James AA | Nature communications | 33144570 | Nat Commun | 2020 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/33144570 |
| Core commitments for field trials of gene drive organisms. | Long KC, Alphey L, Annas GJ, Bloss CS, Campbell KJ, Champer J, Chen CH, Choudhary A, Church GM, Collins JP, Cooper KL, Delborne JA, Edwards OR, Emerson CI, Esvelt K, Evans SW, Friedman RM, Gantz VM, Gould F, Hartley S, Heitman E, Hemingway J, Kanuka H, Kuzma J, Lavery JV, Lee Y, Lorenzen M, Lunshof JE, Marshall JM, Messer PW, Montell C, Oye KA, Palmer MJ, Papathanos PA, Paradkar PN, Piaggio AJ, Rasgon JL, Rašić G, Rudenko L, Saah JR, Scott MJ, Sutton JT, Vorsino AE, Akbari OS | Science (New York, N.Y.) | 33335055 | Science | 2020 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/33335055 |
| A nickase Cas9 gene-drive system promotes super-Mendelian inheritance in Drosophila. | López Del Amo V, Juste SS, Gantz VM | Cell reports | 35613590 | Cell Rep | 2022 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/35613590 |
| CRISPR/Cas9 and active genetics-based trans-species replacement of the endogenous Drosophila kni-L2 CRM reveals unexpected complexity. | Xu XS, Gantz VM, Siomava N, Bier E | eLife | 29274230 | Elife | 2017 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/29274230 |
| Efficient allelic-drive in Drosophila. | Guichard A, Haque T, Bobik M, Xu XS, Klanseck C, Kushwah RBS, Berni M, Kaduskar B, Gantz VM, Bier E | Nature communications | 30967548 | Nat Commun | 2019 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/30967548 |
| Evaluation of Gene Knockouts by CRISPR as Potential Targets for the Genetic Engineering of the Mosquito Culex quinquefasciatus. | Feng X, Kambic L, Nishimoto JHK, Reed FA, Denton JA, Sutton JT, Gantz VM | The CRISPR journal | 34280034 | CRISPR J | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34280034 |
| Double-tap gene drive uses iterative genome targeting to help overcome resistance alleles. | Bishop AL, López Del Amo V, Okamoto EM, Bodai Z, Komor AC, Gantz VM | Nature communications | 35534475 | Nat Commun | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/35534475 |
| CopyCatchers are versatile active genetic elements that detect and quantify inter-homolog somatic gene conversion. | Li Z, Marcel N, Devkota S, Auradkar A, Hedrick SM, Gantz VM, Bier E | Nature communications | 33976171 | Nat Commun | 2021 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/33976171 |
| Optimized CRISPR tools and site-directed transgenesis towards gene drive development in Culex quinquefasciatus mosquitoes. | Feng X, López Del Amo V, Mameli E, Lee M, Bishop AL, Perrimon N, Gantz VM | Nature communications | 34017003 | Nat Commun | 2021 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/34017003 |
| Beyond the eye: Kynurenine pathway impairment causes midgut homeostasis dysfunction and survival and reproductive costs in blood-feeding mosquitoes. | Bottino-Rojas V, Ferreira-Almeida I, Nunes RD, Feng X, Pham TB, Kelsey A, Carballar-Lejarazú R, Gantz V, Oliveira PL, James AA | Insect biochemistry and molecular biology | 34999199 | Insect Biochem Mol Biol | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34999199 |
| SJS/TEN 2019: From science to translation. | Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC | Journal of dermatological science | 32192826 | J Dermatol Sci | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32192826 |
| Advances in the Pathomechanisms of Delayed Drug Hypersensitivity. | Wang CW, Divito SJ, Chung WH, Hung SI | Immunology and allergy clinics of North America | 35469623 | Immunol Allergy Clin North Am | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35469623 |
| Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis: Associations, Outcomes, and Pathobiology-Thirty Years of Progress but Still Much to Be Done. | Stern RS, Divito SJ | The Journal of investigative dermatology | 28411832 | J Invest Dermatol | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28411832 |
| Method of Generating Tolerogenic Maturation-Resistant Dendritic Cells and Testing for Their Immune-Regulatory Functions In Vivo in the Context of Transplantation. | Divito SJ, Morelli AE | Methods in molecular biology (Clifton, N.J.) | 30649773 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30649773 |
| Screening HLA to Prevent Severe Drug Reactions-A Devil's Advocate Perspective. | Divito SJ | JAMA dermatology | 30916720 | JAMA Dermatol | 2019 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/30916720 |
| Assessment of Need for Improved Identification of a Culprit Drug in Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis. | Li DJ, Velasquez GA, Romar GA, Schunkert EM, Foreman RK, Divito SJ | JAMA dermatology | 37342052 | JAMA Dermatol | 2023 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/37342052 |
| Systemic and skin-limited delayed-type drug hypersensitivity reactions associate with distinct resident and recruited T cell subsets. | Shah PN, Romar GA, Manukyan A, Ko WC, Hsieh PC, Velasquez GA, Schunkert EM, Fu X, Guleria I, Bronson RT, Wei K, Waldman AH, Vleugels FR, Liang MG, Giobbie-Hurder A, Mostaghimi A, Schmidt BA, Barrera V, Foreman RK, Garber M, Divito SJ | The Journal of clinical investigation | 39042477 | J Clin Invest | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/39042477 |
| Updates and Insights in the Diagnosis and Management of DRESS Syndrome. | Schunkert EM, Divito SJ | Current dermatology reports | 34777921 | Curr Dermatol Rep | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34777921 |
| Skin Resident Memory T Cells May Play Critical Role in Delayed-Type Drug Hypersensitivity Reactions. | Schunkert EM, Shah PN, Divito SJ | Frontiers in immunology | 34497600 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34497600 |
| Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis-Coordinating Research Priorities to Move the Field Forward. | Phillips EJ, Bouchard CS, Divito SJ | JAMA dermatology | 35353140 | JAMA Dermatol | 2022 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/35353140 |
| Peripheral host T cells survive hematopoietic stem cell transplantation and promote graft-versus-host disease. | Divito SJ, Aasebø AT, Matos TR, Hsieh PC, Collin M, Elco CP, O'Malley JT, Bækkevold ES, Reims H, Gedde-Dahl T, Hagerstrom M, Hilaire J, Lian JW, Milford EL, Pinkus GS, Ho VT, Soiffer RJ, Kim HT, Mihm MC, Ritz J, Guleria I, Cutler CS, Clark RA, Jahnsen FL, Kupper TS | The Journal of clinical investigation | 32516138 | J Clin Invest | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32516138 |
| Implementation of Genetic Screening to Prevent Severe Cutaneous Adverse Drug Reactions Is Crucial-Rebuttal From the Devil's Antagonist-Reply. | Divito SJ | JAMA dermatology | 31851296 | JAMA Dermatol | 2020 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/31851296 |
| Histologic features of graft-versus-host disease-associated angiomatosis: Insights into pathophysiology and treatment. | Li DJ, Romar GA, Hsieh PC, Wells M, Foreman RK, Lian CG, Divito SJ | Journal of the American Academy of Dermatology | 31923444 | J Am Acad Dermatol | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31923444 |
| High-throughput sequencing of the T cell receptor β gene identifies aggressive early-stage mycosis fungoides. | de Masson A, O'Malley JT, Elco CP, Garcia SS, Divito SJ, Lowry EL, Tawa M, Fisher DC, Devlin PM, Teague JE, Leboeuf NR, Kirsch IR, Robins H, Clark RA, Kupper TS | Science translational medicine | 29743350 | Sci Transl Med | 2018 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/29743350 |
| Physical and mental health impact of Stevens-Johnson syndrome/toxic epidermal necrolysis and post-hospital discharge care: Identifying practice gaps. | Coromilas AJ, Divito SJ, Phillips EJ, Micheletti RG | JAAD international | 36941915 | JAAD Int | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36941915 |
| HIV-Associated Immune Dysregulation in the Skin: A Crucible for Exaggerated Inflammation and Hypersensitivity. | Chimbetete T, Buck C, Choshi P, Selim R, Pedretti S, Divito SJ, Phillips EJ, Lehloenya R, Peter J | The Journal of investigative dermatology | 36549954 | J Invest Dermatol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36549954 |
| Survival of tissue-resident memory T cells requires exogenous lipid uptake and metabolism. | Pan Y, Tian T, Park CO, Lofftus SY, Mei S, Liu X, Luo C, O'Malley JT, Gehad A, Teague JE, Divito SJ, Fuhlbrigge R, Puigserver P, Krueger JG, Hotamisligil GS, Clark RA, Kupper TS | Nature | 28219080 | Nature | 2017 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/28219080 |
| Cross-Sectional Study Evaluating Skin, Hair, Nail, and Bone Disease in Patients with Focal Dermal Hypoplasia. | Gunasekera NS, Divito JK, Kupper TS, Huang JT, Divito SJ | Pediatric dermatology | 28025844 | Pediatr Dermatol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28025844 |
| Corrigendum to 'SJS/TEN 2019: From science to translation' [J. Dermatol. Sci. 98/1 (2020) 2-12]. | Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC | Journal of dermatological science | 34763988 | J Dermatol Sci | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34763988 |
| IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy. | Zhou T, Damsky W, Weizman OE, McGeary MK, Hartmann KP, Rosen CE, Fischer S, Jackson R, Flavell RA, Wang J, Sanmamed MF, Bosenberg MW, Ring AM | Nature | 32581358 | Nature | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32581358 |
| IL-18BP mediates the balance between protective and pathological immune responses to Toxoplasma gondii. | Clark JT, Weizman OE, Aldridge DL, Shallberg LA, Eberhard J, Lanzar Z, Wasche D, Huck JD, Zhou T, Ring AM, Hunter CA | Cell reports | 36827187 | Cell Rep | 2023 Mar 28 | https://www.ncbi.nlm.nih.gov/pubmed/36827187 |
| Yeast surface display platform for rapid discovery of conformationally selective nanobodies. | McMahon C, Baier AS, Pascolutti R, Wegrecki M, Zheng S, Ong JX, Erlandson SC, Hilger D, Rasmussen SGF, Ring AM, Manglik A, Kruse AC | Nature structural & molecular biology | 29434346 | Nat Struct Mol Biol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29434346 |
| Diverse functional autoantibodies in patients with COVID-19. | Wang EY, Mao T, Klein J, Dai Y, Huck JD, Jaycox JR, Liu F, Zhou T, Israelow B, Wong P, Coppi A, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Zheng NS, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Team, Dela Cruz C, Farhadian SF, Schulz WL, Ma S, Grubaugh ND, Ko AI, Iwasaki A, Ring AM | Nature | 34010947 | Nature | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34010947 |
| Diverse Functional Autoantibodies in Patients with COVID-19. | Wang EY, Mao T, Klein J, Dai Y, Huck JD, Liu F, Zheng NS, Zhou T, Israelow B, Wong P, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Team, Cruz CD, Farhadian SF, Schulz WL, Grubaugh ND, Ko AI, Iwasaki A, Ring AM | medRxiv : the preprint server for health sciences | 33330894 | medRxiv | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/33330894 |
| High-throughput identification of autoantibodies that target the human exoproteome. | Wang EY, Dai Y, Rosen CE, Schmitt MM, Dong MX, Ferré EMN, Liu F, Yang Y, González-Hernández JA, Meffre E, Hinchcliff M, Koumpouras F, Lionakis MS, Ring AM | Cell reports methods | 35360706 | Cell Rep Methods | 2022 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/35360706 |
| Transferrin receptor targeting by de novo sheet extension. | Sahtoe DD, Coscia A, Mustafaoglu N, Miller LM, Olal D, Vulovic I, Yu TY, Goreshnik I, Lin YR, Clark L, Busch F, Stewart L, Wysocki VH, Ingber DE, Abraham J, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 33879614 | Proc Natl Acad Sci U S A | 2021 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/33879614 |
| Molecular organization of the New World arenavirus spike glycoprotein complex. | Mann CJ, Yang P, Olal D, Fan X, Smith KN, Clark LE, Krammer F, Bian Y, Abraham J | Nature microbiology | 40781447 | Nat Microbiol | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40781447 |
| Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses. | Clark LE, Mahmutovic S, Raymond DD, Dilanyan T, Koma T, Manning JT, Shankar S, Levis SC, Briggiler AM, Enria DA, Wucherpfennig KW, Paessler S, Abraham J | Nature communications | 29760382 | Nat Commun | 2018 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/29760382 |
| Chloroplast redox state changes mark cell-to-cell signaling in the hypersensitive response. | Lukan T, Županič A, Mahkovec Povalej T, Brunkard JO, Kmetič M, Juteršek M, Baebler Š, Gruden K | The New phytologist | 35946378 | New Phytol | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35946378 |
| Ties that bind: the integration of plastid signalling pathways in plant cell metabolism. | Brunkard JO, Burch-Smith TM | Essays in biochemistry | 29563221 | Essays Biochem | 2018 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/29563221 |
| TOR coordinates nucleotide availability with ribosome biogenesis in plants. | Busche M, Scarpin MR, Hnasko R, Brunkard JO | The Plant cell | 33793860 | Plant Cell | 2021 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/33793860 |
| Parallel global profiling of plant TOR dynamics reveals a conserved role for LARP1 in translation. | Scarpin MR, Leiboff S, Brunkard JO | eLife | 33054972 | Elife | 2020 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/33054972 |
| Amino Acid Signaling for TOR in Eukaryotes: Sensors, Transducers, and a Sustainable Agricultural fuTORe. | Lutt N, Brunkard JO | Biomolecules | 35327579 | Biomolecules | 2022 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/35327579 |
| Liguleless narrow and narrow odd dwarf act in overlapping pathways to regulate maize development and metabolism. | Abraham-Juárez MJ, Busche M, Anderson AA, Lunde C, Winders J, Christensen SA, Hunter CT, Hake S, Brunkard JO | The Plant journal : for cell and molecular biology | 36164819 | Plant J | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36164819 |
| ConducTORs of a Signaling Symphony: Metabolic and Hormone Responses Converge on TOR and EIN2 in plants. | Brunkard JO, Chang C, Mayer BJ, Meyer C, Sheen J | Faculty reviews | 35719129 | Fac Rev | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35719129 |
| A Two-Headed Monster to Avert Disaster: HBS1/SKI7 Is Alternatively Spliced to Build Eukaryotic RNA Surveillance Complexes. | Brunkard JO, Baker B | Frontiers in plant science | 30258456 | Front Plant Sci | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30258456 |
| TOR dynamically regulates plant cell-cell transport. | Brunkard JO, Xu M, Scarpin MR, Chatterjee S, Shemyakina EA, Goodman HM, Zambryski P | Proceedings of the National Academy of Sciences of the United States of America | 32051250 | Proc Natl Acad Sci U S A | 2020 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/32051250 |
| Stress management: how NOD and LGN coordinate growth-defence tradeoffs in maize. | Pierroz G | The Plant journal : for cell and molecular biology | 36415090 | Plant J | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36415090 |
| Plant Cell-Cell Transport via Plasmodesmata Is Regulated by Light and the Circadian Clock. | Brunkard JO, Zambryski P | Plant physiology | 31601643 | Plant Physiol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31601643 |
| Quantifying Plasmodesmatal Transport with an Improved GFP Movement Assay. | Horner W, Brunkard JO | Methods in molecular biology (Clifton, N.J.) | 35349148 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35349148 |
| Light regulates alternative splicing outcomes via the TOR kinase pathway. | Riegler S, Servi L, Scarpin MR, Godoy Herz MA, Kubaczka MG, Venhuizen P, Meyer C, Brunkard JO, Kalyna M, Barta A, Petrillo E | Cell reports | 34496244 | Cell Rep | 2021 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/34496244 |
| The Second Site Modifier, Sympathy for the ligule, Encodes a Homolog of Arabidopsis ENHANCED DISEASE RESISTANCE4 and Rescues the Liguleless narrow Maize Mutant. | Anderson A, St Aubin B, Abraham-Juárez MJ, Leiboff S, Shen Z, Briggs S, Brunkard JO, Hake S | The Plant cell | 31217219 | Plant Cell | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31217219 |
| LncRNA gets into the balancing act. | Li F, Brunkard JO, Baker B | Cell host & microbe | 35952640 | Cell Host Microbe | 2022 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/35952640 |
| Translating across kingdoms: target of rapamycin promotes protein synthesis through conserved and divergent pathways in plants. | Scarpin MR, Simmons CH, Brunkard JO | Journal of experimental botany | 35770874 | J Exp Bot | 2022 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/35770874 |
| DRMY1 promotes robust morphogenesis in Arabidopsis by sustaining the translation of cytokinin-signaling inhibitor proteins. | Kong S, Zhu M, Scarpin MR, Pan D, Jia L, Martinez RE, Alamos S, Vadde BVL, Garcia HG, Qian SB, Brunkard JO, Roeder AHK | Developmental cell | 39305905 | Dev Cell | 2024 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/39305905 |
| Cytokinins Stimulate Plasmodesmatal Transport in Leaves. | Horner W, Brunkard JO | Frontiers in plant science | 34135930 | Front Plant Sci | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34135930 |
| Exaptive Evolution of Target of Rapamycin Signaling in Multicellular Eukaryotes. | Brunkard JO | Developmental cell | 32649861 | Dev Cell | 2020 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/32649861 |
| Editorial overview: Cell biology. | Gallagher KL, Brunkard JO | Current opinion in plant biology | 33342469 | Curr Opin Plant Biol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33342469 |
| Terminal ear 1 and phytochromes B1/B2 regulate maize leaf initiation independently. | Busche M, Hake S, Brunkard JO | Genetics | 36495288 | Genetics | 2023 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/36495288 |
| An updated nomenclature for plant ribosomal protein genes. | Scarpin MR, Busche M, Martinez RE, Harper LC, Reiser L, Szakonyi D, Merchante C, Lan T, Xiong W, Mo B, Tang G, Chen X, Bailey-Serres J, Browning KS, Brunkard JO | The Plant cell | 36423343 | Plant Cell | 2023 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/36423343 |
| Reduced synaptic activity and dysregulated extracellular matrix pathways in midbrain neurons from Parkinson's disease patients. | Stern S, Lau S, Manole A, Rosh I, Percia MM, Ben Ezer R, Shokhirev MN, Qiu F, Schafer S, Mansour AA, Mangan KP, Stern T, Ofer P, Stern Y, Diniz Mendes AP, Djamus J, Moore LR, Nayak R, Laufer SH, Aicher A, Rhee A, Wong TL, Nguyen T, Linker SB, Winner B, Freitas BC, Jones E, Sagi I, Bardy C, Brice A, Winkler J, Marchetto MC, Gage FH | NPJ Parkinson's disease | 35948563 | NPJ Parkinsons Dis | 2022 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/35948563 |
| Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data. | Yang Y, Gu Q, Zhang Y, Sasaki T, Crivello J, O'Neill RJ, Gilbert DM, Ma J | Cell systems | 29936186 | Cell Syst | 2018 Aug 22 | https://www.ncbi.nlm.nih.gov/pubmed/29936186 |
| Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure. | Akdemir KC, Le VT, Kim JM, Killcoyne S, King DA, Lin YP, Tian Y, Inoue A, Amin SB, Robinson FS, Nimmakayalu M, Herrera RE, Lynn EJ, Chan K, Seth S, Klimczak LJ, Gerstung M, Gordenin DA, O'Brien J, Li L, Deribe YL, Verhaak RG, Campbell PJ, Fitzgerald R, Morrison AJ, Dixon JR, Andrew Futreal P | Nature genetics | 33020667 | Nat Genet | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33020667 |
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| Protein design and variant prediction using autoregressive generative models. | Shin JE, Riesselman AJ, Kollasch AW, McMahon C, Simon E, Sander C, Manglik A, Kruse AC, Marks DS | Nature communications | 33893299 | Nat Commun | 2021 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/33893299 |
| Biochemical Assays to Directly Assess Smoothened Activation by a Conformationally Sensitive Nanobody. | Deshpande I, Manglik A | Methods in molecular biology (Clifton, N.J.) | 34562250 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/34562250 |
| An ultra-potent synthetic nanobody neutralizes SARS-CoV-2 by locking Spike into an inactive conformation. | Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, García-Sastre A, Ott M, Vignuzzi M, QCRG Structural Biology Consortium, Walter P, Manglik A | bioRxiv : the preprint server for biology | 32817938 | bioRxiv | 2020 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/32817938 |
| Agonist-selective recruitment of engineered protein probes and of GRK2 by opioid receptors in living cells. | Stoeber M, Jullié D, Li J, Chakraborty S, Majumdar S, Lambert NA, Manglik A, von Zastrow M | eLife | 32096468 | Elife | 2020 Feb 25 | https://www.ncbi.nlm.nih.gov/pubmed/32096468 |
| Structure of hepcidin-bound ferroportin reveals iron homeostatic mechanisms. | Billesbølle CB, Azumaya CM, Kretsch RC, Powers AS, Gonen S, Schneider S, Arvedson T, Dror RO, Cheng Y, Manglik A | Nature | 32814342 | Nature | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32814342 |
| An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike. | Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, García-Sastre A, Ott M, Vignuzzi M, QCRG Structural Biology Consortium, Walter P, Manglik A | Science (New York, N.Y.) | 33154106 | Science | 2020 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/33154106 |
| Assessing an Internet-Delivered, Emotion-Focused Intervention Compared With a Healthy Lifestyle Active Control Intervention in Improving Mental Health in Cancer Survivors: Protocol for a Randomized Controlled Trial. | Smith IS, Wallace R, Wellecke C, Bind MA, Weihs KL, Bei B, Wiley JF | JMIR research protocols | 35896021 | JMIR Res Protoc | 2022 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/35896021 |
| Racial and Ethnic Disparities in Early Childhood Obesity. | Isong IA, Rao SR, Bind MA, Avendaño M, Kawachi I, Richmond TK | Pediatrics | 29269386 | Pediatrics | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29269386 |
| Larval zebrafish as an in vitro model for evaluating toxicological effects of mycotoxins. | Juan-García A, Bind MA, Engert F | Ecotoxicology and environmental safety | 32800244 | Ecotoxicol Environ Saf | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/32800244 |
| An educational intervention on HPV knowledge and comfortability discussing vaccination among oral health care professionals of the American Indian and Alaskan Native population. | Salous MH, Bind MA, Granger L, Johnson LB, Welch K, Villa A | Human vaccines & immunotherapeutics | 32401662 | Hum Vaccin Immunother | 2020 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/32401662 |
| The impact of outdoor air pollution on COVID-19: a review of evidence from in vitro, animal, and human studies. | Bourdrel T, Annesi-Maesano I, Alahmad B, Maesano CN, Bind MA | European respiratory review : an official journal of the European Respiratory Society | 33568525 | Eur Respir Rev | 2021 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/33568525 |
| A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota. | Sommer AJ, Peters A, Rommel M, Cyrys J, Grallert H, Haller D, Müller CL, Bind MC | PLoS computational biology | 35533202 | PLoS Comput Biol | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35533202 |
| The role of family history of Cancer in Oral Cavity Cancer. | Fantozzi PJ, Bavarian R, Tamayo I, Bind MA, Woo SB, Villa A | Head & face medicine | 34809651 | Head Face Med | 2021 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/34809651 |
| Quantile causal mediation analysis allowing longitudinal data. | Bind MA, VanderWeele TJ, Schwartz JD, Coull BA | Statistics in medicine | 28786129 | Stat Med | 2017 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/28786129 |
| Cardiovascular effects of air pollution. | Bourdrel T, Bind MA, Béjot Y, Morel O, Argacha JF | Archives of cardiovascular diseases | 28735838 | Arch Cardiovasc Dis | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28735838 |
| Editor's Highlight: Modifying Role of Endothelial Function Gene Variants on the Association of Long-Term PM2.5 Exposure With Blood DNA Methylation Age: The VA Normative Aging Study. | Nwanaji-Enwerem JC, Bind MA, Dai L, Oulhote Y, Colicino E, Di Q, Just AC, Hou L, Vokonas P, Coull BA, Weisskopf MG, Baccarelli AA, Schwartz JD | Toxicological sciences : an official journal of the Society of Toxicology | 28486674 | Toxicol Sci | 2017 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/28486674 |
| Causal Modeling in Environmental Health. | Bind MA | Annual review of public health | 30633715 | Annu Rev Public Health | 2019 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/30633715 |
| Synthesis of Harvard Environmental Protection Agency (EPA) Center studies on traffic-related particulate pollution and cardiovascular outcomes in the Greater Boston Area. | Jhun I, Kim J, Cho B, Gold DR, Schwartz J, Coull BA, Zanobetti A, Rice MB, Mittleman MA, Garshick E, Vokonas P, Bind MA, Wilker EH, Dominici F, Suh H, Koutrakis P | Journal of the Air & Waste Management Association (1995) | 30888266 | J Air Waste Manag Assoc | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30888266 |
| Comparing apples to apples: an environmental criminology analysis of the effects of heat and rain on violent crimes in Boston. | Sommer AJ, Lee M, Bind MC | Palgrave communications | 31360534 | Palgrave Commun | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/31360534 |
| Estimating Causal Effects of Local Air Pollution on Daily Deaths: Effect of Low Levels. | Schwartz J, Bind MA, Koutrakis P | Environmental health perspectives | 27203595 | Environ Health Perspect | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27203595 |
| Randomization-based inference for Bernoulli trial experiments and implications for observational studies. | Branson Z, Bind MA | Statistical methods in medical research | 29451089 | Stat Methods Med Res | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/29451089 |
| Heterogeneous ozone effects on the DNA methylome of bronchial cells observed in a crossover study. | Bind MC, Rubin DB, Cardenas A, Dhingra R, Ward-Caviness C, Liu Z, Mirowsky J, Schwartz JD, Diaz-Sanchez D, Devlin RB | Scientific reports | 32978449 | Sci Rep | 2020 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/32978449 |
| Educational Interventions on Human Papillomavirus for Oral Health Providers. | Pampena E, Vanucci R, Johnson LB, Bind MA, Tamayo I, Welch K, Lind E, Wagner R, Villa A | Journal of cancer education : the official journal of the American Association for Cancer Education | 30868480 | J Cancer Educ | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30868480 |
| Effect modification of ambient particle mortality by radon: A time series analysis in 108 U.S. cities. | Blomberg AJ, Coull BA, Jhun I, Vieira CLZ, Zanobetti A, Garshick E, Schwartz J, Koutrakis P | Journal of the Air & Waste Management Association (1995) | 30230977 | J Air Waste Manag Assoc | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30230977 |
| County-level associations between drinking water PFAS contamination and COVID-19 mortality in the United States. | Liddie JM, Bind MA, Karra M, Sunderland EM | Journal of exposure science & environmental epidemiology | 39369072 | J Expo Sci Environ Epidemiol | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/39369072 |
| Conceptualizing Experimental Controls Using the Potential Outcomes Framework. | Hunter KB, Koenig K, Bind MA | The American statistician | 41234545 | Am Stat | 2025 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/41234545 |
| Joint and independent neurotoxic effects of early life exposures to a chemical mixture: A multi-pollutant approach combining ensemble learning and g-computation. | Oulhote Y, Coull B, Bind MA, Debes F, Nielsen F, Tamayo I, Weihe P, Grandjean P | Environmental epidemiology (Philadelphia, Pa.) | 32051926 | Environ Epidemiol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32051926 |
| Study of locomotion response and development in zebrafish (Danio rerio) embryos and larvae exposed to enniatin A, enniatin B, and beauvericin. | Juan-García A, Juan C, Bind MA, Engert F | The Science of the total environment | 33677298 | Sci Total Environ | 2021 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/33677298 |
| Serum vaccine antibody concentrations in adults exposed to per- and polyfluoroalkyl substances: A birth cohort in the Faroe Islands. | Shih YH, Blomberg AJ, Bind MA, Holm D, Nielsen F, Heilmann C, Weihe P, Grandjean P | Journal of immunotoxicology | 34143710 | J Immunotoxicol | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34143710 |
| When possible, report a Fisher-exact P value and display its underlying null randomization distribution. | Bind MC, Rubin DB | Proceedings of the National Academy of Sciences of the United States of America | 32703808 | Proc Natl Acad Sci U S A | 2020 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/32703808 |
| Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts. | Sturm G, Cardenas A, Bind MA, Horvath S, Wang S, Wang Y, Hägg S, Hirano M, Picard M | Epigenetics | 31156022 | Epigenetics | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31156022 |
| The Role of Ambient Particle Radioactivity in Inflammation and Endothelial Function in an Elderly Cohort. | Blomberg AJ, Nyhan MM, Bind MA, Vokonas P, Coull BA, Schwartz J, Koutrakis P | Epidemiology (Cambridge, Mass.) | 32282436 | Epidemiology | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32282436 |
| Bridging observational studies and randomized experiments by embedding the former in the latter. | Bind MC, Rubin DB | Statistical methods in medical research | 29187059 | Stat Methods Med Res | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29187059 |
| Targeting emotional regulation using an Internet-delivered psychological intervention for cancer survivors: A randomized controlled trial. | Smith IS, Bind MA, Weihs KL, Bei B, Wiley JF | British journal of health psychology | 37437963 | Br J Health Psychol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37437963 |
| Bronchial cell epigenetic aging in a human experimental study of short-term diesel and ozone exposures. | Nwanaji-Enwerem JC, Bozack AK, Ward-Caviness C, Diaz-Sanchez D, Devlin RB, Bind MC, Cardenas A | Environmental epigenetics | 39416749 | Environ Epigenet | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39416749 |
| Counternull sets in randomized experiments. | Bind MC, Rubin DB | The American statistician | 40777734 | Am Stat | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40777734 |
| Ozone, NO(2) and PM(10) are associated with the occurrence of multiple sclerosis relapses. Evidence from seasonal multi-pollutant analyses. | Jeanjean M, Bind MA, Roux J, Ongagna JC, de Sèze J, Bard D, Leray E | Environmental research | 29426027 | Environ Res | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/29426027 |
| Ecology of the cardiovascular system: Part II - A focus on non-air related pollutants. | Argacha JF, Mizukami T, Bourdrel T, Bind MA | Trends in cardiovascular medicine | 30224235 | Trends Cardiovasc Med | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/30224235 |
| County-level radon exposure and all-cause mortality risk among Medicare beneficiaries. | Yitshak-Sade M, Blomberg AJ, Zanobetti A, Schwartz JD, Coull BA, Kloog I, Dominici F, Koutrakis P | Environment international | 31200153 | Environ Int | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31200153 |
| The importance of having a conceptual stage when reporting non-randomized studies. | Bind MC, Rubin DB | Biostatistics & epidemiology | 34368597 | Biostat Epidemiol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34368597 |
| The role of body mass index at diagnosis of colorectal cancer on Black-White disparities in survival: a density regression mediation approach. | Devick KL, Valeri L, Chen J, Jara A, Bind MA, Coull BA | Biostatistics (Oxford, England) | 32968805 | Biostatistics | 2022 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/32968805 |
| Controlled human exposures to diesel exhaust: a human epigenome-wide experiment of target bronchial epithelial cells. | Cardenas A, Fadadu RP, Van Der Laan L, Ward-Caviness C, Granger L, Diaz-Sanchez D, Devlin RB, Bind MA | Environmental epigenetics | 33859829 | Environ Epigenet | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33859829 |
| Pediatric bithalamic gliomas have a distinct epigenetic signature and frequent EGFR exon 20 insertions resulting in potential sensitivity to targeted kinase inhibition. | Mondal G, Lee JC, Ravindranathan A, Villanueva-Meyer JE, Tran QT, Allen SJ, Barreto J, Gupta R, Doo P, Van Ziffle J, Onodera C, Devine P, Grenert JP, Samuel D, Li R, Metrock LK, Jin LW, Antony R, Alashari M, Cheshier S, Whipple NS, Bruggers C, Raffel C, Gupta N, Kline CN, Reddy A, Banerjee A, Hall MD, Mehta MP, Khatib Z, Maher OM, Brathwaite C, Pekmezci M, Phillips JJ, Bollen AW, Tihan T, Lucas JT Jr, Broniscer A, Berger MS, Perry A, Orr BA, Solomon DA | Acta neuropathologica | 32303840 | Acta Neuropathol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32303840 |
| Gliomas arising in the setting of Li-Fraumeni syndrome stratify into two molecular subgroups with divergent clinicopathologic features. | Sloan EA, Hilz S, Gupta R, Cadwell C, Ramani B, Hofmann J, Kline CN, Banerjee A, Reddy A, Oberheim Bush NA, Chang S, Braunstein S, Chang EF, Raffel C, Gupta N, Sun PP, Kim JYH, Moes G, Alva E, Li R, Bruggers CS, Alashari M, Wetmore C, Garg S, Dishop M, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Phillips JJ, Pekmezci M, Tihan T, Bollen AW, Berger MS, Costello JF, Perry A, Solomon DA | Acta neuropathologica | 32157385 | Acta Neuropathol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32157385 |
| Angiocentric glioma with MYB-QKI fusion located in the brainstem, rather than cerebral cortex. | Chan E, Bollen AW, Sirohi D, Van Ziffle J, Grenert JP, Kline CN, Tihan T, Perry A, Gupta N, Solomon DA | Acta neuropathologica | 28776091 | Acta Neuropathol | 2017 Oct | https://www.ncbi.nlm.nih.gov/pubmed/28776091 |
| IDH1 mutation can be present in diffuse astrocytomas and giant cell glioblastomas of young children under 10 years of age. | Ferris SP, Goode B, Joseph NM, Kline CN, Samuel D, Gupta N, Bollen A, Perry A, Mueller S, Solomon DA | Acta neuropathologica | 27161253 | Acta Neuropathol | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27161253 |
| Genetic confirmation that ependymoma can arise as part of multiple endocrine neoplasia type 1 (MEN1) syndrome. | Cuevas-Ocampo AK, Bollen AW, Goode B, Pajtler KW, Chavez L, Sharma T, Dai SC, McDermott M, Perry A, Korshunov A, Solomon DA | Acta neuropathologica | 28238068 | Acta Neuropathol | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28238068 |
| Deep sequencing of WNT-activated medulloblastomas reveals secondary SHH pathway activation. | Iorgulescu JB, Van Ziffle J, Stevers M, Grenert JP, Bastian BC, Chavez L, Stichel D, Buchhalter I, Samuel D, Nicolaides T, Banerjee A, Mueller S, Gupta N, Tihan T, Bollen AW, Northcott PA, Kool M, Pfister S, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 29435664 | Acta Neuropathol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29435664 |
| The role of histone modifications and telomere alterations in the pathogenesis of diffuse gliomas in adults and children. | Lee J, Solomon DA, Tihan T | Journal of neuro-oncology | 28064387 | J Neurooncol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28064387 |
| Imaging Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3 K27M Mutation. | Aboian MS, Solomon DA, Felton E, Mabray MC, Villanueva-Meyer JE, Mueller S, Cha S | AJNR. American journal of neuroradiology | 28183840 | AJNR Am J Neuroradiol | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28183840 |
| Diffusion Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3-K27M Mutation Using Apparent Diffusion Coefficient Histogram Analysis. | Aboian MS, Tong E, Solomon DA, Kline C, Gautam A, Vardapetyan A, Tamrazi B, Li Y, Jordan CD, Felton E, Weinberg B, Braunstein S, Mueller S, Cha S | AJNR. American journal of neuroradiology | 31694820 | AJNR Am J Neuroradiol | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31694820 |
| Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components. | Heskett MB, Sanborn JZ, Boniface C, Goode B, Chapman J, Garg K, Rabban JT, Zaloudek C, Benz SC, Spellman PT, Solomon DA, Cho RJ | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 31911616 | Mod Pathol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31911616 |
| High-grade neuroepithelial tumor with BCOR exon 15 internal tandem duplication-a comprehensive clinical, radiographic, pathologic, and genomic analysis. | Ferris SP, Velazquez Vega J, Aboian M, Lee JC, Van Ziffle J, Onodera C, Grenert JP, Saunders T, Chen YY, Banerjee A, Kline CN, Gupta N, Raffel C, Samuel D, Ruiz-Diaz I, Magaki S, Wilson D, Neltner J, Al-Hajri Z, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Schniederjan M, Cha S, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31104347 | Brain Pathol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31104347 |
| Loss of ZNF750 in ocular and cutaneous sebaceous carcinoma. | North JP, Solomon DA, Golovato J, Bloomer M, Benz SC, Cho RJ | Journal of cutaneous pathology | 31148199 | J Cutan Pathol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31148199 |
| Conserved features of TERT promoter duplications reveal an activation mechanism that mimics hotspot mutations in cancer. | Barger CJ, Suwala AK, Soczek KM, Wang AS, Kim MY, Hong C, Doudna JA, Chang SM, Phillips JJ, Solomon DA, Costello JF | Nature communications | 36114166 | Nat Commun | 2022 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/36114166 |
| Loss of H3K27 trimethylation by immunohistochemistry is frequent in oligodendroglioma, IDH-mutant and 1p/19q-codeleted, but is neither a sensitive nor a specific marker. | Pekmezci M, Phillips JJ, Dirilenoglu F, Atasever-Rezanko T, Tihan T, Solomon D, Bollen A, Perry A | Acta neuropathologica | 31912209 | Acta Neuropathol | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31912209 |
| Myxoid glioneuronal tumor, PDGFRA p.K385-mutant: clinical, radiologic, and histopathologic features. | Lucas CG, Villanueva-Meyer JE, Whipple N, Oberheim Bush NA, Cooney T, Chang S, McDermott M, Berger M, Cham E, Sun PP, Putnam A, Zhou H, Bollo R, Cheshier S, Poppe MM, Fung KM, Sung S, Glenn C, Fan X, Bannykh S, Hu J, Danielpour M, Li R, Alva E, Johnston J, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Pekmezci M, Tihan T, Bollen AW, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31609499 | Brain Pathol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/31609499 |
| Low-grade glioneuronal tumors with FGFR2 fusion resolve into a single epigenetic group corresponding to 'Polymorphous low-grade neuroepithelial tumor of the young'. | Gupta R, Lucas CG, Wu J, Barreto J, Shah K, Simon IB, Casavilca-Zambrano S, Brathwaite C, Zhou H, Caccamo D, Gilani A, Kleinschmidt-DeMasters BK, Lee JC, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 34322742 | Acta Neuropathol | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34322742 |
| Tumor DNA requirements for accurate epigenetic-based classification of CNS neoplasia. | Wu J, Gupta R, Barreto J, Doo P, Joseph NM, Lee JC, Perry A, Chang SM, Berger MS, Solomon DA | Neuro-oncology | 34351421 | Neuro Oncol | 2021 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/34351421 |
| Molecular profiling identifies at least 3 distinct types of posttransplant lymphoproliferative disorder involving the CNS. | Guney E, Lucas CG, Singh K, Pekmezci M, Fernandez-Pol S, Mirchia K, Toland A, Vogel H, Bannykh S, Schafernak KT, Alexandrescu S, Mobley BC, Powell S, Davidson CJ, Neltner J, Boué DR, Hattab E, Ferris SP, Ohgami RS, Rubenstein JL, Bollen AW, Tihan T, Perry A, Solomon DA, Wen KW | Blood advances | 36897259 | Blood Adv | 2023 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/36897259 |
| Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d. | Zhang C, Konermann S, Brideau NJ, Lotfy P, Wu X, Novick SJ, Strutzenberg T, Griffin PR, Hsu PD, Lyumkis D | Cell | 30241607 | Cell | 2018 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/30241607 |
| Structural Basis for the Activation of IKK1/α. | Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G | Cell reports | 27851956 | Cell Rep | 2016 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/27851956 |
| Evaluating Local and Directional Resolution of Cryo-EM Density Maps. | Aiyer S, Zhang C, Baldwin PR, Lyumkis D | Methods in molecular biology (Clifton, N.J.) | 33368004 | Methods Mol Biol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33368004 |
| SrmB Rescues Trapped Ribosome Assembly Intermediates. | Rabuck-Gibbons JN, Popova AM, Greene EM, Cervantes CF, Lyumkis D, Williamson JR | Journal of molecular biology | 31877323 | J Mol Biol | 2020 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/31877323 |
| Non-uniformity of projection distributions attenuates resolution in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 31525386 | Prog Biophys Mol Biol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31525386 |
| Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. | Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N | Cell | 31348888 | Cell | 2019 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/31348888 |
| Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates. | Rabuck-Gibbons JN, Lyumkis D, Williamson JR | Structure (London, England : 1993) | 34990602 | Structure | 2022 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/34990602 |
| Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease. | Polley S, Lyumkis D, Horton NC | Structure (London, England : 1993) | 31447289 | Structure | 2019 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/31447289 |
| Modular Assembly of the Bacterial Large Ribosomal Subunit. | Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR | Cell | 27912064 | Cell | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27912064 |
| Addressing preferred specimen orientation in single-particle cryo-EM through tilting. | Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D | Nature methods | 28671674 | Nat Methods | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28671674 |
| Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd. | Brugger C, Zhang C, Suhanovsky MM, Kim DD, Sinclair AN, Lyumkis D, Deaconescu AM | Nature communications | 32719356 | Nat Commun | 2020 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/32719356 |
| Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant. | Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D | Nature communications | 30194371 | Nat Commun | 2018 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/30194371 |
| Challenges and opportunities in cryo-EM single-particle analysis. | Lyumkis D | The Journal of biological chemistry | 30804214 | J Biol Chem | 2019 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/30804214 |
| Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification. | Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D | Ultramicroscopy | 30528101 | Ultramicroscopy | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30528101 |
| Tools for visualizing and analyzing Fourier space sampling in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 32645314 | Prog Biophys Mol Biol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32645314 |
| Functional Genetic Screening Enables Theranostic Molecular Imaging in Cancer. | Perkons NR, Johnson O, Pilla G, Profka E, Mercadante M, Ackerman D, Gade TPF | Clinical cancer research : an official journal of the American Association for Cancer Research | 32499234 | Clin Cancer Res | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32499234 |
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| Unclassified drug overdose deaths in the opioid crisis: emerging patterns of inequity. | Boslett AJ, Denham A, Hill EL, Adams MCB | Journal of the American Medical Informatics Association : JAMIA | 31034076 | J Am Med Inform Assoc | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31034076 |
| Shale gas development and infant health: Evidence from Pennsylvania. | Hill EL | Journal of health economics | 30114565 | J Health Econ | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30114565 |
| Unconventional natural gas development and pediatric asthma hospitalizations in Pennsylvania. | Willis MD, Jusko TA, Halterman JS, Hill EL | Environmental research | 29936288 | Environ Res | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/29936288 |
| Using contributing causes of death improves prediction of opioid involvement in unclassified drug overdoses in US death records. | Boslett AJ, Denham A, Hill EL | Addiction (Abingdon, England) | 32106355 | Addiction | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32106355 |
| Fatal opioid overdoses in the U.S. declined more than reported between 2017 and 2018. | Boslett A, Denham A, Hill E | The American journal of drug and alcohol abuse | 34107224 | Am J Drug Alcohol Abuse | 2021 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34107224 |
| Drinking water, fracking, and infant health. | Hill EL, Ma L | Journal of health economics | 35172241 | J Health Econ | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35172241 |
| Social distancing merely stabilized COVID-19 in the United States. | Wagner AB, Hill EL, Ryan SE, Sun Z, Deng G, Bhadane S, Hernandez Martinez V, Wu P, Li D, Anand A, Acharya J, Matteson DS | Stat (International Statistical Institute) | 32837718 | Stat (Int Stat Inst) | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32837718 |
| Mortality among US veterans after emergency visits to Veterans Affairs and other hospitals: retrospective cohort study. | Chan DC, Danesh K, Costantini S, Card D, Taylor L, Studdert DM | BMJ (Clinical research ed.) | 35173019 | BMJ | 2022 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/35173019 |
| Accuracy of Valuations of Surgical Procedures in the Medicare Fee Schedule. | Chan DC, Huynh J, Studdert DM | The New England journal of medicine | 30995374 | N Engl J Med | 2019 Apr 18 | https://www.ncbi.nlm.nih.gov/pubmed/30995374 |
| Selection with Variation in Diagnostic Skill: Evidence from Radiologists. | Chan DC, Gentzkow M, Yu C | The quarterly journal of economics | 35422677 | Q J Econ | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35422677 |
| full-FORCE: A target-based method for training recurrent networks. | DePasquale B, Cueva CJ, Rajan K, Escola GS, Abbott LF | PloS one | 29415041 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29415041 |
| Remembrance of things practiced with fast and slow learning in cortical and subcortical pathways. | Murray JM, Escola GS | Nature communications | 33361766 | Nat Commun | 2020 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/33361766 |
| Thalamic control of cortical dynamics in a model of flexible motor sequencing. | Logiaco L, Abbott LF, Escola S | Cell reports | 34077721 | Cell Rep | 2021 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/34077721 |
| Learning multiple variable-speed sequences in striatum via cortical tutoring. | Murray JM, Escola GS | eLife | 28481200 | Elife | 2017 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/28481200 |
| Local online learning in recurrent networks with random feedback. | Murray JM | eLife | 31124785 | Elife | 2019 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/31124785 |
| Treatment recommendations made by a consultant psychiatrist to improve the quality of care in a collaborative mental health intervention in rural Nepal. | Rimal P, Maru D, Chwastiak L, Agrawal P, Rao D, Swar S, Citrin D, Acharya B | BMC psychiatry | 32024490 | BMC Psychiatry | 2020 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/32024490 |
| Costing Analysis of a Pilot Community Health Worker Program in Rural Nepal. | Nepal P, Schwarz R, Citrin D, Thapa A, Acharya B, Acharya Y, Aryal A, Baum A, Bhandari V, Bhatt L, Bhattarai D, Choudhury N, Dangal B, Dhimal M, Dhungana SK, Gauchan B, Halliday S, Kalaunee SP, Kunwar LB, Maru D, Nirola I, Paudel R, Raut A, Rayamazi HJ, Sapkota S, Schwarz D, Thapa P, Thapa P, Tiwari A, Tuitui R, Walter E, Maru S | Global health, science and practice | 32606093 | Glob Health Sci Pract | 2020 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/32606093 |
| Designing and implementing an integrated non-communicable disease primary care intervention in rural Nepal. | Kumar A, Schwarz D, Acharya B, Agrawal P, Aryal A, Choudhury N, Citrin D, Dangal B, Deukmedjian G, Dhimal M, Dhungana S, Gauchan B, Gupta T, Halliday S, Jha D, Kalaunee SP, Karmacharya B, Kishore S, Koirala B, Kunwar L, Mahar R, Maru S, Mehanni S, Nirola I, Pandey S, Pant B, Pathak M, Poudel S, Rajbhandari I, Raut A, Rimal P, Schwarz R, Shrestha A, Thapa A, Thapa P, Thapa R, Wong L, Maru D | BMJ global health | 31139453 | BMJ Glob Health | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31139453 |
| Design and implementation of an affordable, public sector electronic medical record in rural Nepal. | Raut A, Yarbrough C, Singh V, Gauchan B, Citrin D, Verma V, Hawley J, Schwarz D, Harsha Bangura A, Shrestha B, Schwarz R, Adhikari M, Maru D | Journal of innovation in health informatics | 28749321 | J Innov Health Inform | 2017 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/28749321 |
| Accountable Care Reforms Improve Women's And Children's Health In Nepal. | Maru D, Maru S, Nirola I, Gonzalez-Smith J, Thoumi A, Nepal P, Chaudary P, Basnett I, Udayakumar K, McClellan M | Health affairs (Project Hope) | 29137510 | Health Aff (Millwood) | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/29137510 |
| Impact of the roll out of comprehensive emergency obstetric care on institutional birth rate in rural Nepal. | Maru S, Bangura AH, Mehta P, Bista D, Borgatta L, Pande S, Citrin D, Khanal S, Banstola A, Maru D | BMC pregnancy and childbirth | 28259150 | BMC Pregnancy Childbirth | 2017 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/28259150 |
| Comparing two data collection methods to track vital events in maternal and child health via community health workers in rural Nepal. | Choudhury N, Tiwari A, Wu WJ, Bhandari V, Bhatta L, Bogati B, Citrin D, Halliday S, Khadka S, Marasini N, Pandey S, Ballard M, Rayamazi HJ, Sapkota S, Schwarz R, Sullivan L, Maru D, Thapa A, Maru S | Population health metrics | 35897038 | Popul Health Metr | 2022 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/35897038 |
| Measuring fidelity, feasibility, costs: an implementation evaluation of a cluster-controlled trial of group antenatal care in rural Nepal. | Harsha Bangura A, Nirola I, Thapa P, Citrin D, Belbase B, Bogati B, B K N, Khadka S, Kunwar L, Halliday S, Choudhury N, Schwarz R, Adhikari M, Kalaunee SP, Rising S, Maru D, Maru S | Reproductive health | 31952543 | Reprod Health | 2020 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/31952543 |
| Implementing a quality improvement initiative for the management of chronic obstructive pulmonary disease in rural Nepal. | Mehanni S, Jha D, Kumar A, Choudhury N, Dangal B, Deukmedjian G, Dhungana SK, Gauchan B, Gupta TK, Halliday S, Kalaunee SP, Mahar R, Poudel S, Raut A, Schwarz R, Singh DR, Thapa A, Thapa R, Wong L, Maru D, Schwarz D | BMJ open quality | 31259269 | BMJ Open Qual | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31259269 |
| Power, potential, and pitfalls in global health academic partnerships: review and reflections on an approach in Nepal. | Citrin D, Mehanni S, Acharya B, Wong L, Nirola I, Sherchan R, Gauchan B, Karki KB, Singh DR, Shamasunder S, Le P, Schwarz D, Schwarz R, Dangal B, Dhungana SK, Maru S, Mahar R, Thapa P, Raut A, Adhikari M, Basnett I, Kaluanee SP, Deukmedjian G, Halliday S, Maru D | Global health action | 28914185 | Glob Health Action | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28914185 |
| Community-based postpartum contraceptive counselling in rural Nepal: a mixed-methods evaluation. | Wu WJ, Tiwari A, Choudhury N, Basnett I, Bhatt R, Citrin D, Halliday S, Kunwar L, Maru D, Nirola I, Pandey S, Rayamazi HJ, Sapkota S, Saud S, Thapa A, Goldberg A, Maru S | Sexual and reproductive health matters | 32546070 | Sex Reprod Health Matters | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32546070 |
| The power of peers: an effectiveness evaluation of a cluster-controlled trial of group antenatal care in rural Nepal. | Thapa P, Bangura AH, Nirola I, Citrin D, Belbase B, Bogati B, Nirmala BK, Khadka S, Kunwar L, Halliday S, Choudhury N, Ozonoff A, Tenpa J, Schwarz R, Adhikari M, Kalaunee SP, Rising S, Maru D, Maru S | Reproductive health | 31640770 | Reprod Health | 2019 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/31640770 |
| Developing and deploying a community healthcare worker-driven, digitally- enabled integrated care system for municipalities in rural Nepal. | Citrin D, Thapa P, Nirola I, Pandey S, Kunwar LB, Tenpa J, Acharya B, Rayamazi H, Thapa A, Maru S, Raut A, Poudel S, Timilsina D, Dhungana SK, Adhikari M, Khanal MN, Pratap Kc N, Acharya B, Karki KB, Singh DR, Bangura AH, Wacksman J, Storisteanu D, Halliday S, Schwarz R, Schwarz D, Choudhury N, Kumar A, Wu WJ, Kalaunee SP, Chaudhari P, Maru D | Healthcare (Amsterdam, Netherlands) | 29880283 | Healthc (Amst) | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29880283 |
| Delivering Collaborative Care in Rural Settings: Integrating Remote Teleconsultation and Local Supervision in Rural Nepal. | Swar S, Rimal P, Gauchan B, Maru D, Yang Y, Acharya B | Psychiatric services (Washington, D.C.) | 30220241 | Psychiatr Serv | 2019 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/30220241 |
| Practical issues in the measurement of child survival in health systems trials: experience developing a digital community-based mortality surveillance programme in rural Nepal. | Harsha Bangura A, Ozonoff A, Citrin D, Thapa P, Nirola I, Maru S, Schwarz R, Raut A, Belbase B, Halliday S, Adhikari M, Maru D | BMJ global health | 28588974 | BMJ Glob Health | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28588974 |
| An integrated community health worker intervention in rural Nepal: a type 2 hybrid effectiveness-implementation study protocol. | Maru S, Nirola I, Thapa A, Thapa P, Kunwar L, Wu WJ, Halliday S, Citrin D, Schwarz R, Basnett I, Kc N, Karki K, Chaudhari P, Maru D | Implementation science : IS | 29598824 | Implement Sci | 2018 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/29598824 |
| An integrated intervention for chronic care management in rural Nepal: protocol of a type 2 hybrid effectiveness-implementation study. | Schwarz D, Dhungana S, Kumar A, Acharya B, Agrawal P, Aryal A, Baum A, Choudhury N, Citrin D, Dangal B, Dhimal M, Gauchan B, Gupta T, Halliday S, Karmacharya B, Kishore S, Koirala B, Kshatriya U, Levine E, Maru S, Rimal P, Sapkota S, Schwarz R, Shrestha A, Thapa A, Maru D | Trials | 31996250 | Trials | 2020 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/31996250 |
| High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh. | Flaherty KE, Grembi JA, Ramachandran VV, Haque F, Khatun S, Rahman M, Maples S, Becker TK, Spormann AM, Schoolnik GK, Hryckowian AJ, Nelson EJ | PloS one | 34597302 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34597302 |
| Development and evaluation of a clinical guideline for a paediatric telemedicine service in a low-resource setting. | Klarman MB, Chi X, Cajusma Y, Flaherty KE, Capois AC, Dofiné MDV, Exantus L, Friesen J, Beau de Rochars VM, Becker T, Baril C, Gurka MJ, Nelson EJ | BMJ paediatrics open | 38191203 | BMJ Paediatr Open | 2024 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/38191203 |
| Improving Antibiotic Stewardship for Diarrheal Disease With Probability-Based Electronic Clinical Decision Support: A Randomized Crossover Trial. | Nelson EJ, Khan AI, Keita AM, Brintz BJ, Keita Y, Sanogo D, Islam MT, Khan ZH, Rashid MM, Nasrin D, Watt MH, Ahmed SM, Haaland B, Pavia AT, Levine AC, Chao DL, Kotloff KL, Qadri F, Sow SO, Leung DT | JAMA pediatrics | 36036920 | JAMA Pediatr | 2022 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/36036920 |
| Numerical simulation of a compound capsule in a constricted microchannel. | Gounley J, Draeger EW, Randles A | Procedia computer science | 28831291 | Procedia Comput Sci | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28831291 |
| Multivascular networks and functional intravascular topologies within biocompatible hydrogels. | Grigoryan B, Paulsen SJ, Corbett DC, Sazer DW, Fortin CL, Zaita AJ, Greenfield PT, Calafat NJ, Gounley JP, Ta AH, Johansson F, Randles A, Rosenkrantz JE, Louis-Rosenberg JD, Galie PA, Stevens KR, Miller JS | Science (New York, N.Y.) | 31048486 | Science | 2019 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/31048486 |
| Modeling the effect of patient size on cerebral perfusion during veno-arterial extracorporeal membrane oxygenation. | Feiger B, Jensen CW, Bryner BS, Segars WP, Randles A | Perfusion | 37395266 | Perfusion | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37395266 |
| Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature. | Randles A, Draeger EW, Bailey PE | Journal of computational science | 29152011 | J Comput Sci | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29152011 |
| Propagation pattern for moment representation of the lattice Boltzmann method. | Gounley J, Vardhan M, Draeger EW, Valero-Lara P, Moore SV, Randles A | IEEE transactions on parallel and distributed systems : a publication of the IEEE Computer Society | 35498162 | IEEE Trans Parallel Distrib Syst | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35498162 |
| Determining the impacts of venoarterial extracorporeal membrane oxygenation on cerebral oxygenation using a one-dimensional blood flow simulator. | Feiger B, Kochar A, Gounley J, Bonadonna D, Daneshmand M, Randles A | Journal of biomechanics | 32220425 | J Biomech | 2020 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/32220425 |
| Localization of Rolling and Firm-Adhesive Interactions Between Circulating Tumor Cells and the Microvasculature Wall. | Dabagh M, Gounley J, Randles A | Cellular and molecular bioengineering | 32175027 | Cell Mol Bioeng | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32175027 |
| Non-invasive characterization of complex coronary lesions. | Vardhan M, Gounley J, Chen SJ, Chi EC, Kahn AM, Leopold JA, Randles A | Scientific reports | 33854076 | Sci Rep | 2021 Apr 14 | https://www.ncbi.nlm.nih.gov/pubmed/33854076 |
| Computational modelling of perivascular-niche dynamics for the optimization of treatment schedules for glioblastoma. | Randles A, Wirsching HG, Dean JA, Cheng YK, Emerson S, Pattwell SS, Holland EC, Michor F | Nature biomedical engineering | 33864039 | Nat Biomed Eng | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33864039 |
| Computing the ankle-brachial index with parallel computational fluid dynamics. | Gounley J, Draeger EW, Oppelstrup T, Krauss WD, Gunnels JA, Chaudhury R, Nair P, Frakes D, Leopold JA, Randles A | Journal of biomechanics | 30385003 | J Biomech | 2019 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/30385003 |
| Hemodynamic and morphological characteristics of a growing cerebral aneurysm. | Dabagh M, Nair P, Gounley J, Frakes D, Gonzalez LF, Randles A | Neurosurgical focus | 31261117 | Neurosurg Focus | 2019 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/31261117 |
| Accelerating massively parallel hemodynamic models of coarctation of the aorta using neural networks. | Feiger B, Gounley J, Adler D, Leopold JA, Draeger EW, Chaudhury R, Ryan J, Pathangey G, Winarta K, Frakes D, Michor F, Randles A | Scientific reports | 32528104 | Sci Rep | 2020 Jun 11 | https://www.ncbi.nlm.nih.gov/pubmed/32528104 |
| Surgical Modulation of Pulmonary Artery Shear Stress: A Patient-Specific CFD Analysis of the Norwood Procedure. | Chidyagwai SG, Kaplan MS, Jensen CW, Chen JS, Chamberlain RC, Hill KD, Barker PCA, Slesnick TC, Randles A | Cardiovascular engineering and technology | 38459240 | Cardiovasc Eng Technol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38459240 |
| Rapid Ventilator Splitting During COVID-19 Pandemic Using 3D Printed Devices and Numerical Modeling of 200 Million Patient Specific Air Flow Scenarios. | Bishawi M, Kaplan M, Chidyagwai S, Cappiello J, Cherry A, MacLeod D, Gall K, Evans N, Kim M, Shaha R, Whittle J, Hollidge M, Truskey G, Randles A | Research square | 32818206 | Res Sq | 2020 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/32818206 |
| The role of adhesive receptor patterns on cell transport in complex microvessels. | Puleri DF, Randles A | Biomechanics and modeling in mechanobiology | 35507242 | Biomech Model Mechanobiol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35507242 |
| Multiscale modeling of blood flow to assess neurological complications in patients supported by venoarterial extracorporeal membrane oxygenation. | Feiger B, Adebiyi A, Randles A | Computers in biology and medicine | 33333365 | Comput Biol Med | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33333365 |
| Characterization of hemodynamics in anomalous aortic origin of coronary arteries using patient-specific modeling. | Chidyagwai SG, Vardhan M, Kaplan M, Chamberlain R, Barker P, Randles A | Journal of biomechanics | 35063831 | J Biomech | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35063831 |
| Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity? | Gounley J, Chaudhury R, Vardhan M, Driscoll M, Pathangey G, Winarta K, Ryan J, Frakes D, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 28269039 | Annu Int Conf IEEE Eng Med Biol Soc | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28269039 |
| Suitability of lattice Boltzmann inlet and outlet boundary conditions for simulating flow in image-derived vasculature. | Feiger B, Vardhan M, Gounley J, Mortensen M, Nair P, Chaudhury R, Frakes D, Randles A | International journal for numerical methods in biomedical engineering | 30838793 | Int J Numer Method Biomed Eng | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30838793 |
| Investigating the Interaction Between Circulating Tumor Cells and Local Hydrodynamics via Experiment and Simulations. | Pepona M, Balogh P, Puleri DF, Hynes WF, Robertson C, Dubbin K, Alvarado J, Moya ML, Randles A | Cellular and molecular bioengineering | 33184581 | Cell Mol Bioeng | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33184581 |
| Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease. | Randles A, Frakes DH, Leopold JA | Trends in biotechnology | 28942268 | Trends Biotechnol | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28942268 |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 32577691 | medRxiv | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/32577691 |
| Population structure across scales facilitates coexistence and spatial heterogeneity of antibiotic-resistant infections. | Krieger MS, Denison CE, Anderson TL, Nowak MA, Hill AL | PLoS computational biology | 32628660 | PLoS Comput Biol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32628660 |
| Modeling HIV persistence and cure studies. | Hill AL | Current opinion in HIV and AIDS | 29916846 | Curr Opin HIV AIDS | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29916846 |
| Mathematical Models of HIV Latency. | Hill AL | Current topics in microbiology and immunology | 29164341 | Curr Top Microbiol Immunol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29164341 |
| Crowding and the shape of COVID-19 epidemics. | Rader B, Scarpino SV, Nande A, Hill AL, Adlam B, Reiner RC, Pigott DM, Gutierrez B, Zarebski AE, Shrestha M, Brownstein JS, Castro MC, Dye C, Tian H, Pybus OG, Kraemer MUG | Nature medicine | 33020651 | Nat Med | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33020651 |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | PLoS computational biology | 33534808 | PLoS Comput Biol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33534808 |
| Designing and Interpreting Limiting Dilution Assays: General Principles and Applications to the Latent Reservoir for Human Immunodeficiency Virus-1. | Rosenbloom DI, Elliott O, Hill AL, Henrich TJ, Siliciano JM, Siliciano RF | Open forum infectious diseases | 26478893 | Open Forum Infect Dis | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26478893 |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | Epidemics | 37556994 | Epidemics | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37556994 |
| Vaccine failure mode determines population-level impact of vaccination campaigns during epidemics. | Lee DI, Nande A, Anderson TL, Levy MZ, Hill AL | Journal of the Royal Society, Interface | 39965640 | J R Soc Interface | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39965640 |
| Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1. | Hill AL, Rosenbloom DI, Fu F, Nowak MA, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 25097264 | Proc Natl Acad Sci U S A | 2014 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/25097264 |
| Re-evaluating evolution in the HIV reservoir. | Rosenbloom DIS, Hill AL, Laskey SB, Siliciano RF | Nature | 29168805 | Nature | 2017 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/29168805 |
| Ad26/MVA therapeutic vaccination with TLR7 stimulation in SIV-infected rhesus monkeys. | Borducchi EN, Cabral C, Stephenson KE, Liu J, Abbink P, Ng'ang'a D, Nkolola JP, Brinkman AL, Peter L, Lee BC, Jimenez J, Jetton D, Mondesir J, Mojta S, Chandrashekar A, Molloy K, Alter G, Gerold JM, Hill AL, Lewis MG, Pau MG, Schuitemaker H, Hesselgesser J, Geleziunas R, Kim JH, Robb ML, Michael NL, Barouch DH | Nature | 27841870 | Nature | 2016 Dec 8 | https://www.ncbi.nlm.nih.gov/pubmed/27841870 |
| TLR7 agonists induce transient viremia and reduce the viral reservoir in SIV-infected rhesus macaques on antiretroviral therapy. | Lim SY, Osuna CE, Hraber PT, Hesselgesser J, Gerold JM, Barnes TL, Sanisetty S, Seaman MS, Lewis MG, Geleziunas R, Miller MD, Cihlar T, Lee WA, Hill AL, Whitney JB | Science translational medicine | 29720451 | Sci Transl Med | 2018 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/29720451 |
| Chaos synchronization and Nelder-Mead search for parameter estimation in nonlinear pharmacological systems: Estimating tumor antigenicity in a model of immunotherapy. | Pillai N, Craig M, Dokoumetzidis A, Schwartz SL, Bies R, Freedman I | Progress in biophysics and molecular biology | 29928905 | Prog Biophys Mol Biol | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/29928905 |
| Antigen-driven clonal selection shapes the persistence of HIV-1-infected CD4+ T cells in vivo. | Simonetti FR, Zhang H, Soroosh GP, Duan J, Rhodehouse K, Hill AL, Beg SA, McCormick K, Raymond HE, Nobles CL, Everett JK, Kwon KJ, White JA, Lai J, Margolick JB, Hoh R, Deeks SG, Bushman FD, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 33301425 | J Clin Invest | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/33301425 |
| Insight into treatment of HIV infection from viral dynamics models. | Hill AL, Rosenbloom DIS, Nowak MA, Siliciano RF | Immunological reviews | 30129208 | Immunol Rev | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30129208 |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe A, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 33140067 | medRxiv | 2021 Jan 19 | https://www.ncbi.nlm.nih.gov/pubmed/33140067 |
| Real-Time Predictions of Reservoir Size and Rebound Time during Antiretroviral Therapy Interruption Trials for HIV. | Hill AL, Rosenbloom DI, Goldstein E, Hanhauser E, Kuritzkes DR, Siliciano RF, Henrich TJ | PLoS pathogens | 27119536 | PLoS Pathog | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/27119536 |
| Development of an oral once-weekly drug delivery system for HIV antiretroviral therapy. | Kirtane AR, Abouzid O, Minahan D, Bensel T, Hill AL, Selinger C, Bershteyn A, Craig M, Mo SS, Mazdiyasni H, Cleveland C, Rogner J, Lee YL, Booth L, Javid F, Wu SJ, Grant T, Bellinger AM, Nikolic B, Hayward A, Wood L, Eckhoff PA, Nowak MA, Langer R, Traverso G | Nature communications | 29317618 | Nat Commun | 2018 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/29317618 |
| Expanded cellular clones carrying replication-competent HIV-1 persist, wax, and wane. | Wang Z, Gurule EE, Brennan TP, Gerold JM, Kwon KJ, Hosmane NN, Kumar MR, Beg SA, Capoferri AA, Ray SC, Ho YC, Hill AL, Siliciano JD, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 29483265 | Proc Natl Acad Sci U S A | 2018 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/29483265 |
| Ex vivo analysis identifies effective HIV-1 latency-reversing drug combinations. | Laird GM, Bullen CK, Rosenbloom DI, Martin AR, Hill AL, Durand CM, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 25822022 | J Clin Invest | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25822022 |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe AH, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | Nature communications | 33859196 | Nat Commun | 2021 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/33859196 |
| Evolution and emergence of infectious diseases in theoretical and real-world networks. | Leventhal GE, Hill AL, Nowak MA, Bonhoeffer S | Nature communications | 25592476 | Nat Commun | 2015 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/25592476 |
| Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance. | Moreno-Gamez S, Hill AL, Rosenbloom DI, Petrov DA, Nowak MA, Pennings PS | Proceedings of the National Academy of Sciences of the United States of America | 26038564 | Proc Natl Acad Sci U S A | 2015 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/26038564 |
| An upper bound for the half-removal time of neutrophils from circulation. | Craig M, Humphries AR, Mackey MC | Blood | 27578816 | Blood | 2016 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/27578816 |
| Insufficient Evidence for Rare Activation of Latent HIV in the Absence of Reservoir-Reducing Interventions. | Hill AL, Rosenbloom DI, Siliciano JD, Siliciano RF | PLoS pathogens | 27560936 | PLoS Pathog | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/27560936 |
| Dynamics of bed bug infestations and control under disclosure policies. | Xie S, Hill AL, Rehmann CR, Levy MZ | Proceedings of the National Academy of Sciences of the United States of America | 30833386 | Proc Natl Acad Sci U S A | 2019 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/30833386 |
| A Systematic Review of Coronavirus Disease 2019 Vaccine Efficacy and Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Disease. | Higdon MM, Wahl B, Jones CB, Rosen JG, Truelove SA, Baidya A, Nande AA, ShamaeiZadeh PA, Walter KK, Feikin DR, Patel MK, Deloria Knoll M, Hill AL | Open forum infectious diseases | 35611346 | Open Forum Infect Dis | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35611346 |
| Cooperative adaptation to therapy (CAT) confers resistance in heterogeneous non-small cell lung cancer. | Craig M, Kaveh K, Woosley A, Brown AS, Goldman D, Eton E, Mehta RM, Dhawan A, Arai K, Rahman MM, Chen S, Nowak MA, Goldman A | PLoS computational biology | 31449515 | PLoS Comput Biol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31449515 |
| Identifying Driver Interfaces Enriched for Somatic Missense Mutations in Tumors. | Ozturk K, Carter H | Methods in molecular biology (Clifton, N.J.) | 30542990 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30542990 |
| Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival. | Pyke RM, Genolet R, Harari A, Coukos G, Gfeller D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864318 | Pac Symp Biocomput | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30864318 |
| Structure-Based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces. | Engin HB, Kreisberg JF, Carter H | PloS one | 27043210 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27043210 |
| The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine. | Ozturk K, Dow M, Carlin DE, Bejar R, Carter H | Journal of molecular biology | 29908887 | J Mol Biol | 2018 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/29908887 |
| Integrative genomic analysis of mouse and human hepatocellular carcinoma. | Dow M, Pyke RM, Tsui BY, Alexandrov LB, Nakagawa H, Taniguchi K, Seki E, Harismendy O, Shalapour S, Karin M, Carter H, Font-Burgada J | Proceedings of the National Academy of Sciences of the United States of America | 30287485 | Proc Natl Acad Sci U S A | 2018 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/30287485 |
| Challenges in identifying cancer genes by analysis of exome sequencing data. | Hofree M, Carter H, Kreisberg JF, Bandyopadhyay S, Mischel PS, Friend S, Ideker T | Nature communications | 27417679 | Nat Commun | 2016 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/27417679 |
| Immune DNA signature of T-cell infiltration in breast tumor exomes. | Levy E, Marty R, Gárate Calderón V, Woo B, Dow M, Armisen R, Carter H, Harismendy O | Scientific reports | 27452728 | Sci Rep | 2016 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/27452728 |
| Integrating molecular networks with genetic variant interpretation for precision medicine. | Capriotti E, Ozturk K, Carter H | Wiley interdisciplinary reviews. Systems biology and medicine | 30548534 | Wiley Interdiscip Rev Syst Biol Med | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30548534 |
| Extracting allelic read counts from 250,000 human sequencing runs in Sequence Read Archive. | Tsui B, Dow M, Skola D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864322 | Pac Symp Biocomput | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30864322 |
| MHC-I Genotype Restricts the Oncogenic Mutational Landscape. | Marty R, Kaabinejadian S, Rossell D, Slifker MJ, van de Haar J, Engin HB, de Prisco N, Ideker T, Hildebrand WH, Font-Burgada J, Carter H | Cell | 29107334 | Cell | 2017 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/29107334 |
| Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes. | Castro A, Ozturk K, Pyke RM, Xian S, Zanetti M, Carter H | BMC medical genomics | 31345234 | BMC Med Genomics | 2019 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/31345234 |
| MHC-I genotype and tumor mutational burden predict response to immunotherapy. | Goodman AM, Castro A, Pyke RM, Okamura R, Kato S, Riviere P, Frampton G, Sokol E, Zhang X, Ball ED, Carter H, Kurzrock R | Genome medicine | 32430031 | Genome Med | 2020 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/32430031 |
| Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response. | Zhang P, Kitchen-Smith I, Xiong L, Stracquadanio G, Brown K, Richter PH, Wallace MD, Bond E, Sahgal N, Moore S, Nornes S, De Val S, Surakhy M, Sims D, Wang X, Bell DA, Zeron-Medina J, Jiang Y, Ryan AJ, Selfe JL, Shipley J, Kar S, Pharoah PD, Loveday C, Jansen R, Grochola LF, Palles C, Protheroe A, Millar V, Ebner DV, Pagadala M, Blagden SP, Maughan TS, Domingo E, Tomlinson I, Turnbull C, Carter H, Bond GL | Cancer research | 33558336 | Cancer Res | 2021 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/33558336 |
| Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss. | Gross AM, Orosco RK, Shen JP, Egloff AM, Carter H, Hofree M, Choueiri M, Coffey CS, Lippman SM, Hayes DN, Cohen EE, Grandis JR, Nguyen QT, Ideker T | Nature genetics | 25086664 | Nat Genet | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25086664 |
| Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls. | Buckley AR, Standish KA, Bhutani K, Ideker T, Lasken RS, Carter H, Harismendy O, Schork NJ | BMC genomics | 28606096 | BMC Genomics | 2017 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/28606096 |
| Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment. | Wang T, Tsui B, Kreisberg JF, Robertson NA, Gross AM, Yu MK, Carter H, Brown-Borg HM, Adams PD, Ideker T | Genome biology | 28351423 | Genome Biol | 2017 Mar 28 | https://www.ncbi.nlm.nih.gov/pubmed/28351423 |
| Common genetic variation in the germline influences where and how tumors develop. | Carter H, Ideker T | Molecular & cellular oncology | 28616579 | Mol Cell Oncol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28616579 |
| Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. | Zhou Y, Bastian IN, Long MD, Dow M, Li W, Liu T, Ngu RK, Antonucci L, Huang JY, Phung QT, Zhao XH, Banerjee S, Lin XJ, Wang H, Dang B, Choi S, Karin D, Su H, Ellisman MH, Jamieson C, Bosenberg M, Cheng Z, Haybaeck J, Kenner L, Fisch KM, Bourgon R, Hernandez G, Lill JR, Liu S, Carter H, Mellman I, Karin M, Shalapour S | Proceedings of the National Academy of Sciences of the United States of America | 33602823 | Proc Natl Acad Sci U S A | 2021 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/33602823 |
| 3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry. | Velez DO, Tsui B, Goshia T, Chute CL, Han A, Carter H, Fraley SI | Nature communications | 29162797 | Nat Commun | 2017 Nov 21 | https://www.ncbi.nlm.nih.gov/pubmed/29162797 |
| The RUNX1-ETO target gene RASSF2 suppresses t(8;21) AML development and regulates Rac GTPase signaling. | Stoner SA, Liu KTH, Andrews ET, Liu M, Arimoto KI, Yan M, Davis AG, Weng S, Dow M, Xian S, DeKelver RC, Carter H, Zhang DE | Blood cancer journal | 32029705 | Blood Cancer J | 2020 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/32029705 |
| A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. | Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T | Nature genetics | 29610481 | Nat Genet | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29610481 |
| Evolutionary Pressure against MHC Class II Binding Cancer Mutations. | Marty Pyke R, Thompson WK, Salem RM, Font-Burgada J, Zanetti M, Carter H | Cell | 30245014 | Cell | 2018 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/30245014 |
| Predicting functional consequences of mutations using molecular interaction network features. | Ozturk K, Carter H | Human genetics | 34432150 | Hum Genet | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34432150 |
| Defining Dysbiosis in Disorders of Movement and Motivation. | Fields CT, Sampson TR, Bruce-Keller AJ, Kiraly DD, Hsiao EY, de Vries GJ | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30381433 | J Neurosci | 2018 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/30381433 |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 29804833 | Cell | 2018 Jun 14 | https://www.ncbi.nlm.nih.gov/pubmed/29804833 |
| The Microbiome and Host Behavior. | Vuong HE, Yano JM, Fung TC, Hsiao EY | Annual review of neuroscience | 28301775 | Annu Rev Neurosci | 2017 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/28301775 |
| Emerging Roles for the Gut Microbiome in Autism Spectrum Disorder. | Vuong HE, Hsiao EY | Biological psychiatry | 27773355 | Biol Psychiatry | 2017 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/27773355 |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 30007420 | Cell | 2018 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/30007420 |
| The Microbial Olympics 2016. | Nelson MB, Chase AB, Martiny JB, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, Ackermann M, Smillie C, Chien D, Alm E, Jermy AJ | Nature microbiology | 27573121 | Nat Microbiol | 2016 Jul 26 | https://www.ncbi.nlm.nih.gov/pubmed/27573121 |
| Interactions between the microbiota, immune and nervous systems in health and disease. | Fung TC, Olson CA, Hsiao EY | Nature neuroscience | 28092661 | Nat Neurosci | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/28092661 |
| Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis. | Yano JM, Yu K, Donaldson GP, Shastri GG, Ann P, Ma L, Nagler CR, Ismagilov RF, Mazmanian SK, Hsiao EY | Cell | 25860609 | Cell | 2015 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/25860609 |
| Intestinal serotonin and fluoxetine exposure modulate bacterial colonization in the gut. | Fung TC, Vuong HE, Luna CDG, Pronovost GN, Aleksandrova AA, Riley NG, Vavilina A, McGinn J, Rendon T, Forrest LR, Hsiao EY | Nature microbiology | 31477894 | Nat Microbiol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31477894 |
| The Microbiome as a Modifier of Neurodegenerative Disease Risk. | Fang P, Kazmi SA, Jameson KG, Hsiao EY | Cell host & microbe | 32791113 | Cell Host Microbe | 2020 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/32791113 |
| Young adults' BMI and changes in romantic relationship status during the first semester of college. | van Woerden I, Brewis A, Hruschka D, Dunton G, Adams MA, Bruening M | PloS one | 32214397 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32214397 |
| Weight Shame, Social Connection, and Depressive Symptoms in Late Adolescence. | Brewis AA, Bruening M | International journal of environmental research and public health | 29723962 | Int J Environ Res Public Health | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29723962 |
| A Systematic Review of Methods and Procedures Used in Ecological Momentary Assessments of Diet and Physical Activity Research in Youth: An Adapted STROBE Checklist for Reporting EMA Studies (CREMAS). | Liao Y, Skelton K, Dunton G, Bruening M | Journal of medical Internet research | 27328833 | J Med Internet Res | 2016 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/27328833 |
| Food Insecure College Students and Objective Measurements of Their Unused Meal Plans. | van Woerden I, Hruschka D, Vega-Lόpez S, Schaefer DR, Adams M, Bruening M | Nutrients | 31018554 | Nutrients | 2019 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/31018554 |
| Gut microbiome diversity, variability, and latent community types compared with shifts in body weight during the freshman year of college in dormitory-housed adolescents. | Mohr AE, Ahern MM, Sears DD, Bruening M, Whisner CM | Gut microbes | 37642346 | Gut Microbes | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37642346 |
| Longitudinal assessment of food insecurity status on the gut microbiome and metabolome of first-year college students. | Mohr AE, Jasbi P, van Woerden I, Bowes DA, Chi J, Gu H, Bruening M, Whisner CM | The British journal of nutrition | 40524571 | Br J Nutr | 2025 Jun 28 | https://www.ncbi.nlm.nih.gov/pubmed/40524571 |
| The Struggle Is Real: A Systematic Review of Food Insecurity on Postsecondary Education Campuses. | Bruening M, Argo K, Payne-Sturges D, Laska MN | Journal of the Academy of Nutrition and Dietetics | 28754200 | J Acad Nutr Diet | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28754200 |
| Factors Related to the High Rates of Food Insecurity among Diverse, Urban College Freshmen. | Bruening M, Brennhofer S, van Woerden I, Todd M, Laska M | Journal of the Academy of Nutrition and Dietetics | 27212147 | J Acad Nutr Diet | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27212147 |
| Hungry to learn: the prevalence and effects of food insecurity on health behaviors and outcomes over time among a diverse sample of university freshmen. | Bruening M, van Woerden I, Todd M, Laska MN | The international journal of behavioral nutrition and physical activity | 29347963 | Int J Behav Nutr Phys Act | 2018 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/29347963 |
| Finding and Keeping Friends in College and Their Influence on Alcohol Use: A Network Analysis. | Schaefer DR, Van Woerden I, Hruschka D, Bruening M | Journal of studies on alcohol and drugs | 33573730 | J Stud Alcohol Drugs | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33573730 |
| Changes in Weight Status and the Intestinal Microbiota Among College Freshman, Aged 18 Years. | Journey EK, Ortega-Santos CP, Bruening M, Whisner CM | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 31477511 | J Adolesc Health | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31477511 |
| Evaluating Potential Behavioral Mediators for Increasing Similarity in Friends' Body Size among College Students. | van Woerden I, Hruschka D, Schaefer DR, Fine KL, Bruening M | Nutrients | 31450804 | Nutrients | 2019 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/31450804 |
| Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study. | Whisner CM, Maldonado J, Dente B, Krajmalnik-Brown R, Bruening M | BMC microbiology | 30541450 | BMC Microbiol | 2018 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/30541450 |
| A Mobile Ecological Momentary Assessment Tool (devilSPARC) for Nutrition and Physical Activity Behaviors in College Students: A Validation Study. | Bruening M, van Woerden I, Todd M, Brennhofer S, Laska MN, Dunton G | Journal of medical Internet research | 27465701 | J Med Internet Res | 2016 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/27465701 |
| Social Mechanisms for Weight-related Behaviors among Emerging Adults. | Bruening M, Huberty J, Skelton K, Brennhofer S, Voytyuk M | Health behavior and policy review | 31867404 | Health Behav Policy Rev | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31867404 |
| Similarity in meal plan use among first-year roommates. | van Woerden I, Schaefer DR, Hruschka D, Vega-Lopez S, Adams M, Bruening M | Appetite | 31593746 | Appetite | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31593746 |
| First-year college students' weight change is influenced by their randomly assigned roommates' BMI. | van Woerden I, Hruschka D, Brewis A, Schaefer DR, Bruening M | PloS one | 33232356 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33232356 |
| Chemophototherapy: An Emerging Treatment Option for Solid Tumors. | Luo D, Carter KA, Miranda D, Lovell JF | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 28105389 | Adv Sci (Weinh) | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28105389 |
| Recent applications of phthalocyanines and naphthalocyanines for imaging and therapy. | Zhang Y, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 27439671 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27439671 |
| Hexamodal imaging with porphyrin-phospholipid-coated upconversion nanoparticles. | Rieffel J, Chen F, Kim J, Chen G, Shao W, Shao S, Chitgupi U, Hernandez R, Graves SA, Nickles RJ, Prasad PN, Kim C, Cai W, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 25640213 | Adv Mater | 2015 Mar 11 | https://www.ncbi.nlm.nih.gov/pubmed/25640213 |
| Clinical development and potential of photothermal and photodynamic therapies for cancer. | Li X, Lovell JF, Yoon J, Chen X | Nature reviews. Clinical oncology | 32699309 | Nat Rev Clin Oncol | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32699309 |
| A malaria vaccine adjuvant based on recombinant antigen binding to liposomes. | Huang WC, Deng B, Lin C, Carter KA, Geng J, Razi A, He X, Chitgupi U, Federizon J, Sun B, Long CA, Ortega J, Dutta S, King CR, Miura K, Lee SM, Lovell JF | Nature nanotechnology | 30297818 | Nat Nanotechnol | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30297818 |
| Antibody response of a particle-inducing, liposome vaccine adjuvant admixed with a Pfs230 fragment. | Huang WC, Deng B, Seffouh A, Ortega J, Long CA, Suresh RV, He X, Miura K, Lee SM, Wu Y, Lovell JF | NPJ vaccines | 32218995 | NPJ Vaccines | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32218995 |
| Antigen Engineering Approaches for Lyme Disease Vaccines. | Federizon J, Lin YP, Lovell JF | Bioconjugate chemistry | 30987418 | Bioconjug Chem | 2019 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/30987418 |
| Liposomal formulations of photosensitizers. | Ghosh S, Carter KA, Lovell JF | Biomaterials | 31336279 | Biomaterials | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31336279 |
| Loading and Releasing Ciprofloxacin in Photoactivatable Liposomes. | Ghosh S, Qi R, Carter KA, Zhang G, Pfeifer BA, Lovell JF | Biochemical engineering journal | 31105464 | Biochem Eng J | 2019 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/31105464 |
| Metalloporphyrin Nanoparticles: Coordinating Diverse Theranostic Functions. | Shao S, Rajendiran V, Lovell JF | Coordination chemistry reviews | 30559508 | Coord Chem Rev | 2019 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/30559508 |
| Directed vaccination against pneumococcal disease. | Li Y, Hill A, Beitelshees M, Shao S, Lovell JF, Davidson BA, Knight PR 3rd, Hakansson AP, Pfeifer BA, Jones CH | Proceedings of the National Academy of Sciences of the United States of America | 27274071 | Proc Natl Acad Sci U S A | 2016 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/27274071 |
| Highly-Soluble Cyanine J-aggregates Entrapped by Liposomes for In Vivo Optical Imaging around 930 nm. | Miranda D, Huang H, Kang H, Zhan Y, Wang D, Zhou Y, Geng J, Kilian HI, Stiles W, Razi A, Ortega J, Xia J, Choi HS, Lovell JF | Theranostics | 30809281 | Theranostics | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30809281 |
| Naphthalocyanines as contrast agents for photoacoustic and multimodal imaging. | Chitgupi U, Lovell JF | Biomedical engineering letters | 30603204 | Biomed Eng Lett | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/30603204 |
| Functionalization of cobalt porphyrin-phospholipid bilayers with his-tagged ligands and antigens. | Shao S, Geng J, Ah Yi H, Gogia S, Neelamegham S, Jacobs A, Lovell JF | Nature chemistry | 25901823 | Nat Chem | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25901823 |
| Recent Advances in Higher-Order, Multimodal, Biomedical Imaging Agents. | Rieffel J, Chitgupi U, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 26185099 | Small | 2015 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/26185099 |
| Coherent-weighted three-dimensional image reconstruction in linear-array-based photoacoustic tomography. | Wang D, Wang Y, Zhou Y, Lovell JF, Xia J | Biomedical optics express | 27231634 | Biomed Opt Express | 2016 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/27231634 |
| Reversible Micro- and Nano- Phase Programming of Anthraquinone Thermochromism Using Blended Block Copolymers. | Zhang Y, Lovell JF | Langmuir : the ACS journal of surfaces and colloids | 26626998 | Langmuir | 2015 Dec 22 | https://www.ncbi.nlm.nih.gov/pubmed/26626998 |
| Rapid Light-Triggered Drug Release in Liposomes Containing Small Amounts of Unsaturated and Porphyrin-Phospholipids. | Luo D, Li N, Carter KA, Lin C, Geng J, Shao S, Huang WC, Qin Y, Atilla-Gokcumen GE, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 27121003 | Small | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27121003 |
| Emerging applications of porphyrins in photomedicine. | Huang H, Song W, Rieffel J, Lovell JF | Frontiers in physics | 28553633 | Front Phys | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28553633 |
| Short Drug-Light Intervals Improve Liposomal Chemophototherapy in Mice Bearing MIA PaCa-2 Xenografts. | Luo D, Carter KA, Geng J, He X, Lovell JF | Molecular pharmaceutics | 29608312 | Mol Pharm | 2018 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/29608312 |
| Assessing Photosensitizer Targeting Using Meso-Tetra(Carboxyphenyl) Porphyrin. | Chitgupi U, Lovell JF, Rajendiran V | Molecules (Basel, Switzerland) | 29649139 | Molecules | 2018 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/29649139 |
| An Engineered Biomimetic MPER Peptide Vaccine Induces Weakly HIV Neutralizing Antibodies in Mice. | Shao S, Huang WC, Lin C, Hicar MD, LaBranche CC, Montefiori DC, Lovell JF | Annals of biomedical engineering | 31832930 | Ann Biomed Eng | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31832930 |
| Immunogenicity of the Lyme disease antigen OspA, particleized by cobalt porphyrin-phospholipid liposomes. | Federizon J, Frye A, Huang WC, Hart TM, He X, Beltran C, Marcinkiewicz AL, Mainprize IL, Wills MKB, Lin YP, Lovell JF | Vaccine | 31727504 | Vaccine | 2020 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/31727504 |
| Trans-illumination intestine projection imaging of intestinal motility in mice. | Wang D, Zhang H, Vu T, Zhan Y, Malhotra A, Wang P, Chitgupi U, Rai A, Zhang S, Wang L, Huizinga JD, Lovell JF, Xia J | Nature communications | 33727562 | Nat Commun | 2021 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/33727562 |
| Porphyrin-phospholipid liposomes permeabilized by near-infrared light. | Carter KA, Shao S, Hoopes MI, Luo D, Ahsan B, Grigoryants VM, Song W, Huang H, Zhang G, Pandey RK, Geng J, Pfeifer BA, Scholes CP, Ortega J, Karttunen M, Lovell JF | Nature communications | 24699423 | Nat Commun | 2014 Apr 3 | https://www.ncbi.nlm.nih.gov/pubmed/24699423 |
| Nanomedical engineering: shaping future nanomedicines. | Luo D, Carter KA, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 25377691 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2015 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/25377691 |
| Sulfonated Polyethylenimine for Photosensitizer Conjugation and Targeting. | Chitgupi U, Zhang Y, Lo CY, Shao S, Song W, Geng J, Neelamegham S, Lovell JF | Bioconjugate chemistry | 26057017 | Bioconjug Chem | 2015 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/26057017 |
| Metal Chelation Modulates Phototherapeutic Properties of Mitoxantrone-Loaded Porphyrin-Phospholipid Liposomes. | Carter KA, Wang S, Geng J, Luo D, Shao S, Lovell JF | Molecular pharmaceutics | 26691879 | Mol Pharm | 2016 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/26691879 |
| Slit-enabled linear-array photoacoustic tomography with near isotropic spatial resolution in three dimensions. | Wang Y, Wang D, Zhang Y, Geng J, Lovell JF, Xia J | Optics letters | 26696175 | Opt Lett | 2016 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/26696175 |
| Axial PEGylation of Tin Octabutoxy Naphthalocyanine Extends Blood Circulation for Photoacoustic Vascular Imaging. | Huang H, Wang D, Zhang Y, Zhou Y, Geng J, Chitgupi U, Cook TR, Xia J, Lovell JF | Bioconjugate chemistry | 27259401 | Bioconjug Chem | 2016 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/27259401 |
| Design of Hydrated Porphyrin-Phospholipid Bilayers with Enhanced Magnetic Resonance Contrast. | Shao S, Do TN, Razi A, Chitgupi U, Geng J, Alsop RJ, Dzikovski BG, Rheinstädter MC, Ortega J, Karttunen M, Spernyak JA, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 27739249 | Small | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27739249 |
| Implantable Tin Porphyrin-PEG Hydrogels with pH-Responsive Fluorescence. | Huang H, Chauhan S, Geng J, Qin Y, Watson DF, Lovell JF | Biomacromolecules | 28146351 | Biomacromolecules | 2017 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/28146351 |
| Photoactivation of sulfonated polyplexes enables localized gene silencing by DsiRNA in breast cancer cells. | Puri A, Viard M, Zakrevsky P, Zampino S, Chen A, Isemann C, Alvi S, Clogston J, Chitgupi U, Lovell JF, Shapiro BA | Nanomedicine : nanotechnology, biology, and medicine | 32151748 | Nanomedicine | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32151748 |
| Blood Interactions, Pharmacokinetics, and Depth-Dependent Ablation of Rat Mammary Tumors with Photoactivatable, Liposomal Doxorubicin. | Carter KA, Luo D, Geng J, Stern ST, Lovell JF | Molecular cancer therapeutics | 30587558 | Mol Cancer Ther | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30587558 |
| Surfactant-Stripped Pheophytin Micelles for Multimodal Tumor Imaging and Photodynamic Therapy. | Moukheiber D, Chitgupi U, Carter KA, Luo D, Sun B, Goel S, Ferreira CA, Engle JW, Wang D, Geng J, Zhang Y, Xia J, Cai W, Lovell JF | ACS applied bio materials | 31853516 | ACS Appl Bio Mater | 2019 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/31853516 |
| Enhanced drug delivery using sonoactivatable liposomes with membrane-embedded porphyrins. | Wang X, Yan F, Liu X, Wang P, Shao S, Sun Y, Sheng Z, Liu Q, Lovell JF, Zheng H | Journal of controlled release : official journal of the Controlled Release Society | 30075210 | J Control Release | 2018 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/30075210 |
| Surfactant-Stripped Micelles for NIR-II Photoacoustic Imaging through 12 cm of Breast Tissue and Whole Human Breasts. | Chitgupi U, Nyayapathi N, Kim J, Wang D, Sun B, Li C, Carter K, Huang WC, Kim C, Xia J, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 31414515 | Adv Mater | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31414515 |
| Engineered Nanoparticle Applications for Recombinant Influenza Vaccines. | Sia ZR, Miller MS, Lovell JF | Molecular pharmaceutics | 32787280 | Mol Pharm | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/32787280 |
| Facile formulation of a long-wavelength cyanine for optical imaging in the second near-infrared window. | Kilian HI , Kang H , Nyayapathi N , Fukuda T , Adluru E , Zhang H , Quinn B , Xia J , Choi HS , Lovell JF | Biomaterials science | 32515752 | Biomater Sci | 2020 Aug 7 | https://www.ncbi.nlm.nih.gov/pubmed/32515752 |
| A surfactant-stripped cabazitaxel micelle formulation optimized with accelerated storage stability. | Sun B, Jing H, Mabrouk MT, Zhang Y, Jin H, Lovell JF | Pharmaceutical development and technology | 32892678 | Pharm Dev Technol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32892678 |
| Ingestible roasted barley for contrast-enhanced photoacoustic imaging in animal and human subjects. | Wang D, Lee DH, Huang H, Vu T, Lim RSA, Nyayapathi N, Chitgupi U, Liu M, Geng J, Xia J, Lovell JF | Biomaterials | 29803105 | Biomaterials | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29803105 |
| Binding of an amphiphilic phthalocyanine to pre-formed liposomes confers light-triggered cargo release. | Macháček M, Carter KA, Kostelanský F, Miranda D, Seffouh A, Ortega J, Šimůnek T, Zimčík P, Lovell JF | Journal of materials chemistry. B | 30984399 | J Mater Chem B | 2018 Nov 28 | https://www.ncbi.nlm.nih.gov/pubmed/30984399 |
| Indocyanine green binds to DOTAP liposomes for enhanced optical properties and tumor photoablation. | Miranda D, Wan C, Kilian HI, Mabrouk MT, Zhou Y, Jin H, Lovell JF | Biomaterials science | 31232421 | Biomater Sci | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31232421 |
| Multifunctional Liposomes for Image-Guided Intratumoral Chemo-Phototherapy. | Miranda D, Carter K, Luo D, Shao S, Geng J, Li C, Chitgupi U, Turowski SG, Li N, Atilla-Gokcumen GE, Spernyak JA, Lovell JF | Advanced healthcare materials | 28504409 | Adv Healthc Mater | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28504409 |
| Folate-Targeted Nanoliposomal Chemophototherapy. | Chitgupi U, Qin Y, Ghosh S, Quinn B, Carter K, He X, Sunar U, Lovell JF | Pharmaceutics | 37896144 | Pharmaceutics | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37896144 |
| Does the declining lethality of gunshot injuries mask a rising epidemic of gun violence in the United States? | Jena AB, Sun EC, Prasad V | Journal of general internal medicine | 24452421 | J Gen Intern Med | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24452421 |
| Opioid prescribing by multiple providers in Medicare: retrospective observational study of insurance claims. | Jena AB, Goldman D, Weaver L, Karaca-Mandic P | BMJ (Clinical research ed.) | 24553363 | BMJ | 2014 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/24553363 |
| The Peltzman effect and compensatory markers in medicine. | Prasad V, Jena AB | Healthcare (Amsterdam, Netherlands) | 25396116 | Healthc (Amst) | 2014 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/25396116 |
| Mortality and treatment patterns among patients hospitalized with acute cardiovascular conditions during dates of national cardiology meetings. | Jena AB, Prasad V, Goldman DP, Romley J | JAMA internal medicine | 25531231 | JAMA Intern Med | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25531231 |
| Exposing physicians to reduced residency work hours did not adversely affect patient outcomes after residency. | Jena AB, Schoemaker L, Bhattacharya J | Health affairs (Project Hope) | 25288430 | Health Aff (Millwood) | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25288430 |
| Prescription Patterns of Family Members After Discontinued Opioid or Benzodiazepine Therapy of Users. | Barnett ML, Hicks TR, Jena AB | JAMA internal medicine | 31260053 | JAMA Intern Med | 2019 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/31260053 |
| Tying Reimbursement to Outcomes Is an Ideal Strategy for PCSK9 Inhibitors. | Blumenthal DM, Goldman D, Jena AB | JAMA cardiology | 28854318 | JAMA Cardiol | 2017 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/28854318 |
| Health and Health Care Use Among Individuals at Risk to Lose Health Insurance With Repeal of the Affordable Care Act. | Karaca-Mandic P, Jena AB, Ross JS | JAMA internal medicine | 28114528 | JAMA Intern Med | 2017 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/28114528 |
| Quality of care delivered by general internists in US hospitals who graduated from foreign versus US medical schools: observational study. | Tsugawa Y, Jena AB, Orav EJ, Jha AK | BMJ (Clinical research ed.) | 28153977 | BMJ | 2017 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/28153977 |
| Turning evidence into practice under payment reform: the new frontier of translational science. | Jena AB, Stevens W, McWilliams JM | Journal of general internal medicine | 25092013 | J Gen Intern Med | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25092013 |
| Medical professional liability risk among US cardiologists. | Mangalmurti S, Seabury SA, Chandra A, Lakdawalla D, Oetgen WJ, Jena AB | American heart journal | 24766979 | Am Heart J | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/24766979 |
| The Impact of the US Food and Drug Administration Chlorofluorocarbon Ban on Out-of-pocket Costs and Use of Albuterol Inhalers Among Individuals With Asthma. | Jena AB, Ho O, Goldman DP, Karaca-Mandic P | JAMA internal medicine | 25962128 | JAMA Intern Med | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25962128 |
| Longitudinal analyses of gender differences in first authorship publications related to COVID-19. | Lerchenmüller C, Schmallenbach L, Jena AB, Lerchenmueller MJ | BMJ open | 33820790 | BMJ Open | 2021 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/33820790 |
| Patient mortality after surgery on the surgeon's birthday: observational study. | Kato H, Jena AB, Tsugawa Y | BMJ (Clinical research ed.) | 34913872 | BMJ | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/34913872 |
| Physician Network Connections Associated With Faster De-Adoption of Dronedarone for Permanent Atrial Fibrillation. | Stecher C, Everhart A, Smith LB, Jena A, Ross JS, Desai NR, Shah N, Karaca-Mandic P | Circulation. Cardiovascular quality and outcomes | 34555928 | Circ Cardiovasc Qual Outcomes | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/34555928 |
| Long-term effects of the 2003 ACGME resident duty hour reform on hospital mortality. | Jena AB, Prasad V, Romley JA | Mayo Clinic proceedings | 24996240 | Mayo Clin Proc | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24996240 |
| Mandatory use of prescription drug monitoring programs. | Haffajee RL, Jena AB, Weiner SG | JAMA | 25622279 | JAMA | 2015 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/25622279 |
| Outcomes of Basic Versus Advanced Life Support for Out-of-Hospital Medical Emergencies. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Annals of internal medicine | 26457627 | Ann Intern Med | 2015 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/26457627 |
| Reducing prognostic errors: a new imperative in quality healthcare. | Khullar D, Jena AB | BMJ (Clinical research ed.) | 26993146 | BMJ | 2016 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/26993146 |
| Adverse inpatient outcomes during the transition to a new electronic health record system: observational study. | Barnett ML, Mehrotra A, Jena AB | BMJ (Clinical research ed.) | 27471242 | BMJ | 2016 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/27471242 |
| Hospital Prescribing of Opioids to Medicare Beneficiaries. | Jena AB, Goldman D, Karaca-Mandic P | JAMA internal medicine | 27294595 | JAMA Intern Med | 2016 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/27294595 |
| Outcomes-Based Pricing as a Tool to Ensure Access to Novel but Expensive Biopharmaceuticals. | Blumenthal DM, Goldman DP, Jena AB | Annals of internal medicine | 27951598 | Ann Intern Med | 2017 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/27951598 |
| Early death after discharge from emergency departments: analysis of national US insurance claims data. | Obermeyer Z, Cohn B, Wilson M, Jena AB, Cutler DM | BMJ (Clinical research ed.) | 28148486 | BMJ | 2017 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/28148486 |
| Identifying outlier patterns of inconsistent ambulance billing in Medicare. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Health services research | 33492665 | Health Serv Res | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33492665 |
| Decline and Rebound in Routine Cancer Screening Rates During the COVID-19 Pandemic. | McBain RK, Cantor JH, Jena AB, Pera MF, Bravata DM, Whaley CM | Journal of general internal medicine | 33742300 | J Gen Intern Med | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33742300 |
| Behavioral Heuristics in Coronary-Artery Bypass Graft Surgery. | Olenski AR, Zimerman A, Coussens S, Jena AB | The New England journal of medicine | 32074429 | N Engl J Med | 2020 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/32074429 |
| Acute Myocardial Infarction Mortality During Dates of National Interventional Cardiology Meetings. | Jena AB, Olenski A, Blumenthal DM, Yeh RW, Goldman DP, Romley J | Journal of the American Heart Association | 29523525 | J Am Heart Assoc | 2018 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/29523525 |
| Association Between Playing American Football in the National Football League and Long-term Mortality. | Venkataramani AS, Gandhavadi M, Jena AB | JAMA | 29392304 | JAMA | 2018 Feb 27 | https://www.ncbi.nlm.nih.gov/pubmed/29392304 |
| Association of Grit Scores With Treatment Adherence and Biomarkers in Patients With Type 2 Diabetes. | Peña PA, Pérez-Díaz I, Pulido-Ayala AK, Osorio-Landa HK, López-Navarro JM, Duckworth AL, Jena AB | JAMA network open | 31517961 | JAMA Netw Open | 2019 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/31517961 |
| The need for speed: observational study of physician driving behaviors. | Zimerman A, Worsham C, Woo J, Jena AB | BMJ (Clinical research ed.) | 31852682 | BMJ | 2019 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/31852682 |
| Does medicine run in the family-evidence from three generations of physicians in Sweden: retrospective observational study. | Polyakova M, Persson P, Hofmann K, Jena AB | BMJ (Clinical research ed.) | 33328192 | BMJ | 2020 Dec 16 | https://www.ncbi.nlm.nih.gov/pubmed/33328192 |
| Patient and provider-level factors associated with changes in utilization of treatments in response to evidence on ineffectiveness or harm. | Smith LB, Desai NR, Dowd B, Everhart A, Herrin J, Higuera L, Jeffery MM, Jena AB, Ross JS, Shah ND, Karaca-Mandic P | International journal of health economics and management | 32350680 | Int J Health Econ Manag | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32350680 |
| Sex Differences in Time Spent on Household Activities and Care of Children Among US Physicians, 2003-2016. | Ly DP, Jena AB | Mayo Clinic proceedings | 29673711 | Mayo Clin Proc | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/29673711 |
| Delays in Emergency Care and Mortality during Major U.S. Marathons. | Jena AB, Mann NC, Wedlund LN, Olenski A | The New England journal of medicine | 28402772 | N Engl J Med | 2017 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/28402772 |
| Physician age and outcomes in elderly patients in hospital in the US: observational study. | Tsugawa Y, Newhouse JP, Zaslavsky AM, Blumenthal DM, Jena AB | BMJ (Clinical research ed.) | 28512089 | BMJ | 2017 May 16 | https://www.ncbi.nlm.nih.gov/pubmed/28512089 |
| Comparison of Anesthesia Times and Billing Patterns by Anesthesia Practitioners. | Sun EC, Dutton RP, Jena AB | JAMA network open | 30646351 | JAMA Netw Open | 2018 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/30646351 |
| Association of Overlapping Surgery With Perioperative Outcomes. | Sun E, Mello MM, Rishel CA, Vaughn MT, Kheterpal S, Saager L, Fleisher LA, Damrose EJ, Kadry B, Jena AB, Multicenter Perioperative Outcomes Group (MPOG) | JAMA | 30806696 | JAMA | 2019 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/30806696 |
| Association of residency work hour reform with long term quality and costs of care of US physicians: observational study. | Jena AB, Farid M, Blumenthal D, Bhattacharya J | BMJ (Clinical research ed.) | 31292124 | BMJ | 2019 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/31292124 |
| Rates and Characteristics of Paid Malpractice Claims Among US Physicians by Specialty, 1992-2014. | Schaffer AC, Jena AB, Seabury SA, Singh H, Chalasani V, Kachalia A | JAMA internal medicine | 28346582 | JAMA Intern Med | 2017 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/28346582 |
| Codon optimality is a major determinant of mRNA stability. | Presnyak V, Alhusaini N, Chen YH, Martin S, Morris N, Kline N, Olson S, Weinberg D, Baker KE, Graveley BR, Coller J | Cell | 25768907 | Cell | 2015 Mar 12 | https://www.ncbi.nlm.nih.gov/pubmed/25768907 |
| miCLIP-MaPseq Identifies Substrates of Radical SAM RNA-Methylating Enzyme Using Mechanistic Cross-Linking and Mismatch Profiling. | Stojković V, Weinberg DE, Fujimori DG | Methods in molecular biology (Clifton, N.J.) | 34085241 | Methods Mol Biol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34085241 |
| In vitro analysis of RQC activities provides insights into the mechanism and function of CAT tailing. | Osuna BA, Howard CJ, Kc S, Frost A, Weinberg DE | eLife | 28718767 | Elife | 2017 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/28718767 |
| Accurate, Streamlined Analysis of mRNA Translation by Sucrose Gradient Fractionation. | Aboulhouda S, Di Santo R, Therizols G, Weinberg D | Bio-protocol | 29170751 | Bio Protoc | 2017 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/29170751 |
| Perinatal Licensing of Thermogenesis by IL-33 and ST2. | Odegaard JI, Lee MW, Sogawa Y, Bertholet AM, Locksley RM, Weinberg DE, Kirichok Y, Deo RC, Chawla A | Cell | 27453471 | Cell | 2016 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/27453471 |
| Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation. | Weinberg DE, Shah P, Eichhorn SW, Hussmann JA, Plotkin JB, Bartel DP | Cell reports | 26876183 | Cell Rep | 2016 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/26876183 |
| The fail-safe mechanism of post-transcriptional silencing of unspliced HAC1 mRNA. | Di Santo R, Aboulhouda S, Weinberg DE | eLife | 27692069 | Elife | 2016 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/27692069 |
| miCLIP-MaPseq, a Substrate Identification Approach for Radical SAM RNA Methylating Enzymes. | Stojković V, Chu T, Therizols G, Weinberg DE, Fujimori DG | Journal of the American Chemical Society | 29782154 | J Am Chem Soc | 2018 Jun 13 | https://www.ncbi.nlm.nih.gov/pubmed/29782154 |
| One-step enzymatic modification of the cell surface redirects cellular cytotoxicity and parasite tropism. | Swee LK, Lourido S, Bell GW, Ingram JR, Ploegh HL | ACS chemical biology | 25360987 | ACS Chem Biol | 2015 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/25360987 |
| Toxoplasma gondii. | Lourido S | Trends in parasitology | 31345768 | Trends Parasitol | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31345768 |
| Plate-Based Quantification of Stimulated Toxoplasma Egress. | Shortt E, Lourido S | Methods in molecular biology (Clifton, N.J.) | 31758453 | Methods Mol Biol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/31758453 |
| Identification of a Master Regulator of Differentiation in Toxoplasma. | Waldman BS, Schwarz D, Wadsworth MH 2nd, Saeij JP, Shalek AK, Lourido S | Cell | 31955846 | Cell | 2020 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/31955846 |
| Alveolar proteins stabilize cortical microtubules in Toxoplasma gondii. | Harding CR, Gow M, Kang JH, Shortt E, Manalis SR, Meissner M, Lourido S | Nature communications | 30674885 | Nat Commun | 2019 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/30674885 |
| Age and sex of surgeons and mortality of older surgical patients: observational study. | Tsugawa Y, Jena AB, Orav EJ, Blumenthal DM, Tsai TC, Mehtsun WT, Jha AK | BMJ (Clinical research ed.) | 29695473 | BMJ | 2018 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/29695473 |
| CRISPR-Cas9-based genome-wide screening of Toxoplasma gondii. | Sidik SM, Huet D, Lourido S | Nature protocols | 29323662 | Nat Protoc | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29323662 |
| Identification of Direct Kinase Substrates Using Analogue-Sensitive Alleles. | Rothenberg DA, Gordon EA, White FM, Lourido S | Methods in molecular biology (Clifton, N.J.) | 26584919 | Methods Mol Biol | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26584919 |
| Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. | Fischer M, Coleman RG, Fraser JS, Shoichet BK | Nature chemistry | 24950326 | Nat Chem | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24950326 |
| Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR. | Keedy DA, van den Bedem H, Sivak DA, Petsko GA, Ringe D, Wilson MA, Fraser JS | Structure (London, England : 1993) | 24882744 | Structure | 2014 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/24882744 |
| From systems to structure: bridging networks and mechanism. | Fraser JS, Gross JD, Krogan NJ | Molecular cell | 23352243 | Mol Cell | 2013 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/23352243 |
| CheShift-2 resolves a local inconsistency between two X-ray crystal structures. | Vila JA, Sue SC, Fraser JS, Scheraga HA, Dyson HJ | Journal of biomolecular NMR | 22945426 | J Biomol NMR | 2012 Oct | https://www.ncbi.nlm.nih.gov/pubmed/22945426 |
| From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. | Braberg H, Jin H, Moehle EA, Chan YA, Wang S, Shales M, Benschop JJ, Morris JH, Qiu C, Hu F, Tang LK, Fraser JS, Holstege FC, Hieter P, Guthrie C, Kaplan CD, Krogan NJ | Cell | 23932120 | Cell | 2013 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/23932120 |
| Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine. | Williams BB, Van Benschoten AH, Cimermancic P, Donia MS, Zimmermann M, Taketani M, Ishihara A, Kashyap PC, Fraser JS, Fischbach MA | Cell host & microbe | 25263219 | Cell Host Microbe | 2014 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/25263219 |
| Keep on moving: discovering and perturbing the conformational dynamics of enzymes. | Bhabha G, Biel JT, Fraser JS | Accounts of chemical research | 25539415 | Acc Chem Res | 2015 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/25539415 |
| CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. | Cimermancic P, Weinkam P, Rettenmaier TJ, Bichmann L, Keedy DA, Woldeyes RA, Schneidman-Duhovny D, Demerdash ON, Mitchell JC, Wells JA, Fraser JS, Sali A | Journal of molecular biology | 26854760 | J Mol Biol | 2016 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/26854760 |
| Measuring and modeling diffuse scattering in protein X-ray crystallography. | Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME | Proceedings of the National Academy of Sciences of the United States of America | 27035972 | Proc Natl Acad Sci U S A | 2016 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/27035972 |
| Conformational variation of proteins at room temperature is not dominated by radiation damage. | Russi S, González A, Kenner LR, Keedy DA, Fraser JS, van den Bedem H | Journal of synchrotron radiation | 28009548 | J Synchrotron Radiat | 2017 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/28009548 |
| Yeast oligo-mediated genome engineering (YOGE). | DiCarlo JE, Conley AJ, Penttilä M, Jäntti J, Wang HH, Church GM | ACS synthetic biology | 24160921 | ACS Synth Biol | 2013 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/24160921 |
| Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides. | Bonde MT, Kosuri S, Genee HJ, Sarup-Lytzen K, Church GM, Sommer MO, Wang HH | ACS synthetic biology | 24856730 | ACS Synth Biol | 2015 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/24856730 |
| MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering. | Bonde MT, Klausen MS, Anderson MV, Wallin AI, Wang HH, Sommer MO | Nucleic acids research | 24838561 | Nucleic Acids Res | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24838561 |
| Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis. | Wang HH, Huang PY, Xu G, Haas W, Marblestone A, Li J, Gygi SP, Forster AC, Jewett MC, Church GM | ACS synthetic biology | 22737598 | ACS Synth Biol | 2012 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/22737598 |
| Prediction of resistance development against drug combinations by collateral responses to component drugs. | Munck C, Gumpert HK, Wallin AI, Wang HH, Sommer MO | Science translational medicine | 25391482 | Sci Transl Med | 2014 Nov 12 | https://www.ncbi.nlm.nih.gov/pubmed/25391482 |
| A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions. | Stockman VB, Ghamsari L, Lasso G, Honig B, Shapira SD, Wang HH | PloS one | 27936040 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27936040 |
| Manipulating Bacterial Communities by in situ Microbiome Engineering. | Sheth RU, Cabral V, Chen SP, Wang HH | Trends in genetics : TIG | 26916078 | Trends Genet | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/26916078 |
| Principles for designing synthetic microbial communities. | Johns NI, Blazejewski T, Gomes AL, Wang HH | Current opinion in microbiology | 27084981 | Curr Opin Microbiol | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27084981 |
| Genome-scale promoter engineering by coselection MAGE. | Wang HH, Kim H, Cong L, Jeong J, Bang D, Church GM | Nature methods | 22484848 | Nat Methods | 2012 Jun | https://www.ncbi.nlm.nih.gov/pubmed/22484848 |
| Genome-scale engineering for systems and synthetic biology. | Esvelt KM, Wang HH | Molecular systems biology | 23340847 | Mol Syst Biol | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23340847 |
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| Pathway Graphical Lasso. | Grechkin M, Fazel M, Witten D, Lee SI | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence | 26167394 | Proc AAAI Conf Artif Intell | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26167394 |
| Learning Graphical Models With Hubs. | Tan KM, London P, Mohan K, Lee SI, Fazel M, Witten D | Journal of machine learning research : JMLR | 25620891 | J Mach Learn Res | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25620891 |
| Testing for association in multiview network data. | Gao LL, Witten D, Bien J | Biometrics | 33792914 | Biometrics | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33792914 |
| Controlling costs: Feature selection on a budget. | Yu G, Witten D, Bien J | Stat | 38250253 | Stat | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38250253 |
| On the assessment of statistical significance of three-dimensional colocalization of sets of genomic elements. | Witten DM, Noble WS | Nucleic acids research | 22266657 | Nucleic Acids Res | 2012 May | https://www.ncbi.nlm.nih.gov/pubmed/22266657 |
| Structured Learning of Gaussian Graphical Models. | Mohan K, Chung MJ, Han S, Witten D, Lee SI, Fazel M | Advances in neural information processing systems | 25360066 | Adv Neural Inf Process Syst | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/25360066 |
| Sparse Biclustering of Transposable Data. | Tan KM, Witten DM | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 25364221 | J Comput Graph Stat | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25364221 |
| Graph Estimation with Joint Additive Models. | Voorman A, Shojaie A, Witten D | Biometrika | 25013234 | Biometrika | 2014 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/25013234 |
| SCALPEL: EXTRACTING NEURONS FROM CALCIUM IMAGING DATA. | Petersen A, Simon N, Witten D | The annals of applied statistics | 30510612 | Ann Appl Stat | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30510612 |
| EXACT SPIKE TRAIN INFERENCE VIA ℓ(0) OPTIMIZATION. | Jewell S, Witten D | The annals of applied statistics | 30627301 | Ann Appl Stat | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30627301 |
| Molecular signatures from omics data: from chaos to consensus. | Sung J, Wang Y, Chandrasekaran S, Witten DM, Price ND | Biotechnology journal | 22528809 | Biotechnol J | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22528809 |
| Statistical properties of convex clustering. | Tan KM, Witten D | Electronic journal of statistics | 27617051 | Electron J Stat | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/27617051 |
| Nearly assumptionless screening for the mutually-exciting multivariate Hawkes process. | Chen S, Witten D, Shojaie A | Electronic journal of statistics | 28845209 | Electron J Stat | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28845209 |
| Selection and estimation for mixed graphical models. | Chen S, Witten DM, Shojaie A | Biometrika | 27625437 | Biometrika | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/27625437 |
| Node-Based Learning of Multiple Gaussian Graphical Models. | Mohan K, London P, Fazel M, Witten D, Lee SI | Journal of machine learning research : JMLR | 25309137 | J Mach Learn Res | 2014 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/25309137 |
| The joint graphical lasso for inverse covariance estimation across multiple classes. | Danaher P, Wang P, Witten DM | Journal of the Royal Statistical Society. Series B, Statistical methodology | 24817823 | J R Stat Soc Series B Stat Methodol | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24817823 |
| The Cluster Elastic Net for High-Dimensional Regression With Unknown Variable Grouping. | Witten DM, Shojaie A, Zhang F | Technometrics : a journal of statistics for the physical, chemical, and engineering sciences | 24817772 | Technometrics | 2014 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/24817772 |
| A general framework for estimating the relative pathogenicity of human genetic variants. | Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J | Nature genetics | 24487276 | Nat Genet | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24487276 |
| The cluster graphical lasso for improved estimation of Gaussian graphical models. | Tan KM, Witten D, Shojaie A | Computational statistics & data analysis | 25642008 | Comput Stat Data Anal | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25642008 |
| Hypothesis testing for differentially correlated features. | Sheng E, Witten D, Zhou XH | Biostatistics (Oxford, England) | 27044327 | Biostatistics | 2016 Oct | https://www.ncbi.nlm.nih.gov/pubmed/27044327 |
| Discussion of 'Gene hunting with hidden Markov model knockoffs'. | Jewell SW, Witten DM | Biometrika | 30799876 | Biometrika | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30799876 |
| MODELING MICROBIAL ABUNDANCES AND DYSBIOSIS WITH BETA-BINOMIAL REGRESSION. | Martin BD, Witten D, Willis AD | The annals of applied statistics | 32983313 | Ann Appl Stat | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32983313 |
| Adaptive nonparametric regression with the K-nearest neighbour fused lasso. | Madrid Padilla OH, Sharpnack J, Chen Y, Witten DM | Biometrika | 32454528 | Biometrika | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32454528 |
| Network Reconstruction From High-Dimensional Ordinary Differential Equations. | Chen S, Shojaie A, Witten DM | Journal of the American Statistical Association | 29618851 | J Am Stat Assoc | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29618851 |
| Testing for a Change in Mean After Changepoint Detection. | Jewell S, Fearnhead P, Witten D | Journal of the Royal Statistical Society. Series B, Statistical methodology | 36419504 | J R Stat Soc Series B Stat Methodol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36419504 |
| Discussion on Covariate-assisted ranking and screening for large-scale two-sample inference. | Yu G, Bien J, Witten D | Journal of the Royal Statistical Society. Series B, Statistical methodology | 31178656 | J R Stat Soc Series B Stat Methodol | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/31178656 |
| Fast nonconvex deconvolution of calcium imaging data. | Jewell SW, Hocking TD, Fearnhead P, Witten DM | Biostatistics (Oxford, England) | 30753436 | Biostatistics | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/30753436 |
| Loss of MeCP2 in the rat models regression, impaired sociability and transcriptional deficits of Rett syndrome. | Veeraragavan S, Wan YW, Connolly DR, Hamilton SM, Ward CS, Soriano S, Pitcher MR, McGraw CM, Huang SG, Green JR, Yuva LA, Liang AJ, Neul JL, Yasui DH, LaSalle JM, Liu Z, Paylor R, Samaco RC | Human molecular genetics | 27365498 | Hum Mol Genet | 2016 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/27365498 |
| Forniceal deep brain stimulation rescues hippocampal memory in Rett syndrome mice. | Hao S, Tang B, Wu Z, Ure K, Sun Y, Tao H, Gao Y, Patel AJ, Curry DJ, Samaco RC, Zoghbi HY, Tang J | Nature | 26469053 | Nature | 2015 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/26469053 |
| Combinatorial therapy discovery using mixed integer linear programming. | Pang K, Wan YW, Choi WT, Donehower LA, Sun J, Pant D, Liu Z | Bioinformatics (Oxford, England) | 24463180 | Bioinformatics | 2014 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/24463180 |
| Otud7a Knockout Mice Recapitulate Many Neurological Features of 15q13.3 Microdeletion Syndrome. | Yin J, Chen W, Chao ES, Soriano S, Wang L, Wang W, Cummock SE, Tao H, Pang K, Liu Z, Pereira FA, Samaco RC, Zoghbi HY, Xue M, Schaaf CP | American journal of human genetics | 29395075 | Am J Hum Genet | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29395075 |
| Genetic rodent models of brain disorders: Perspectives on experimental approaches and therapeutic strategies. | McGraw CM, Ward CS, Samaco RC | American journal of medical genetics. Part C, Seminars in medical genetics | 28910526 | Am J Med Genet C Semin Med Genet | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28910526 |
| Loss of MeCP2 Causes Urological Dysfunction and Contributes to Death by Kidney Failure in Mouse Models of Rett Syndrome. | Ward CS, Huang TW, Herrera JA, Samaco RC, Pitcher MR, Herron A, Skinner SA, Kaufmann WE, Glaze DG, Percy AK, Neul JL | PloS one | 27828991 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27828991 |
