NIH Director's Early Independence Award
NIH Director's Early Independence Award
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date |
|---|---|---|---|---|---|
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 36711689 | bioRxiv | 2023 Nov 20 |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 37732239 | bioRxiv | 2023 Sep 5 |
| Direct cortical stimulation induces short-term plasticity of neural oscillations in humans. | Munot S, Kim N, Huang Y, Keller CJ | bioRxiv : the preprint server for biology | 38014071 | bioRxiv | 2023 Nov 17 |
| Neural effects of TMS trains on the human prefrontal cortex. | Ross JM, Cline CC, Sarkar M, Truong J, Keller CJ | bioRxiv : the preprint server for biology | 36778457 | bioRxiv | 2023 Nov 22 |
| Experimental suppression of transcranial magnetic stimulation-electroencephalography sensory potentials. | Ross JM, Sarkar M, Keller CJ | Human brain mapping | 35770956 | Hum Brain Mapp | 2022 Dec 1 |
| Dorsolateral prefrontal cortex TMS evokes responses in the subgenual anterior cingulate cortex: Evidence from human intracranial EEG. | Trapp NT, Liu X, Li Z, Bruss J, Keller CJ, Boes AD, Jiang J | bioRxiv : the preprint server for biology | 39763715 | bioRxiv | 2024 Dec 26 |
| Real-time optimization to enhance noninvasive cortical excitability assessment in the human dorsolateral prefrontal cortex. | Parmigiani S, Cline CC, Sarkar M, Forman L, Truong J, Ross JM, Gogulski J, Keller CJ | bioRxiv : the preprint server for biology | 38853941 | bioRxiv | 2024 May 31 |
| Global connectivity and local excitability changes underlie antidepressant effects of repetitive transcranial magnetic stimulation. | Eshel N, Keller CJ, Wu W, Jiang J, Mills-Finnerty C, Huemer J, Wright R, Fonzo GA, Ichikawa N, Carreon D, Wong M, Yee A, Shpigel E, Guo Y, McTeague L, Maron-Katz A, Etkin A | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32053828 | Neuropsychopharmacology | 2020 May |
| Editorial: Inter- and Intra-subject Variability in Brain Imaging and Decoding. | Wei CS, Keller CJ, Li J, Lin YP, Nakanishi M, Wagner J, Wu W, Zhang Y, Jung TP | Frontiers in computational neuroscience | 34912203 | Front Comput Neurosci | 2021 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | bioRxiv : the preprint server for biology | 37645954 | bioRxiv | 2023 Nov 19 |
| Sensory Entrained TMS (seTMS) enhances motor cortex excitability. | Ross JM, Forman L, Gogulski J, Hassan U, Cline CC, Parmigiani S, Truong J, Hartford JW, Chen NF, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | bioRxiv : the preprint server for biology | 39651225 | bioRxiv | 2024 Nov 27 |
| Theta-burst direct electrical stimulation remodels human brain networks. | Huang Y, Zelmann R, Hadar P, Dezha-Peralta J, Richardson RM, Williams ZM, Cash SS, Keller CJ, Paulk AC | Nature communications | 39143083 | Nat Commun | 2024 Aug 14 |
| Personalized Repetitive Transcranial Magnetic Stimulation for Depression. | Gogulski J, Ross JM, Talbot A, Cline CC, Donati FL, Munot S, Kim N, Gibbs C, Bastin N, Yang J, Minasi C, Sarkar M, Truong J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36792455 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Apr |
| Reliability and Validity of Transcranial Magnetic Stimulation-Electroencephalography Biomarkers. | Parmigiani S, Ross JM, Cline CC, Minasi CB, Gogulski J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36894435 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Aug |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | Cerebral cortex (New York, N.Y. : 1991) | 38596882 | Cereb Cortex | 2024 Apr 1 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | Brain stimulation | 38821396 | Brain Stimul | 2024 May-Jun |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology | 38865780 | Clin Neurophysiol | 2024 Aug |
| Combining Sampling Methods with Attractor Dynamics in Spiking Models of Head-Direction Systems. | Pjanovic V, Zavatone-Veth J, Masset P, Keemink S, Nardin M | bioRxiv : the preprint server for biology | 40060526 | bioRxiv | 2025 Feb 26 |
| Psychometrics of the Children's Report of Parental Behavior Inventory among caregivers and youth with HIV. | Rodriguez VJ, Kendall AD, Cohen MH, Nsanzimana S, Ingabire C, Remera E, Donenberg G | Journal of family psychology : JFP : journal of the Division of Family Psychology of the American Psychological Association (Division 43) | 38451718 | J Fam Psychol | 2024 Mar 7 |
| MDMA enhances positive affective responses to social feedback. | Bershad AK, Hsu DT, de Wit H | Journal of psychopharmacology (Oxford, England) | 38279662 | J Psychopharmacol | 2024 Mar |
| Altered States and Social Bonds: Effects of MDMA and Serotonergic Psychedelics on Social Behavior as a Mechanism Underlying Substance-Assisted Therapy. | Schmid Y, Bershad AK | Biological psychiatry. Cognitive neuroscience and neuroimaging | 38341085 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2024 May |
| The 3,4-methylenedioxymethamphetamine enhances early visual processing for salient socio-emotional stimuli. | Haggarty CJ, Bershad AK, Kumar MK, Lee R, de Wit H | The European journal of neuroscience | 38637983 | Eur J Neurosci | 2024 Jun |
| Quantized multi-task learning for context-specific representations of gene network dynamics. | Chen H, Venkatesh MS, Ortega JG, Mahesh SV, Nandi TN, Madduri RK, Pelka K, Theodoris CV | bioRxiv : the preprint server for biology | 39229018 | bioRxiv | 2024 Aug 19 |
| Multiplex generation and single cell analysis of structural variants in a mammalian genome. | Pinglay S, Lalanne JB, Daza RM, Koeppel J, Li X, Lee DS, Shendure J | bioRxiv : the preprint server for biology | 38405830 | bioRxiv | 2024 Feb 12 |
| Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières Syndrome neuropathology. | Nemec KM, Uy G, Chaluvadi VS, Purnell FS, Elfayoumi B, O'Brien CA, Aisenberg WH, Lombroso SI, Guo X, Blank N, Oon CH, Yaqoob F, Temsamrit B, Rawat P, Thaiss CA, Wang Q, Bennett ML, Bennett FC | bioRxiv : the preprint server for biology | 39345609 | bioRxiv | 2024 Sep 20 |
| The prototypical interferonopathy: Aicardi-Goutières syndrome from bedside to bench. | Hofer MJ, Modesti N, Coufal NG, Wang Q, Sase S, Miner JJ, Vanderver A, Bennett ML | Immunological reviews | 39473130 | Immunol Rev | 2024 Oct |
| Generalizable Links Between Borderline Personality Traits and Functional Connectivity. | Shafiei G, Keller AS, Bertolero M, Shanmugan S, Bassett DS, Chen AA, Covitz S, Houghton A, Luo A, Mehta K, Salo T, Shinohara RT, Fair D, Hallquist MN, Satterthwaite TD | Biological psychiatry | 38460580 | Biol Psychiatry | 2024 Sep 15 |
| ComBatLS: A location- and scale-preserving method for multi-site image harmonization. | Gardner M, Shinohara RT, Bethlehem RAI, Romero-Garcia R, Warrier V, Dorfschmidt L, Lifespan Brain Chart Consortium, Shanmugan S, Thompson P, Seidlitz J, Alexander-Bloch AF, Chen AA | bioRxiv : the preprint server for biology | 39131292 | bioRxiv | 2024 Jul 30 |
| Reproducible Sex Differences in Personalized Functional Network Topography in Youth. | Keller AS, Sun KY, Francisco A, Robinson H, Beydler E, Bassett DS, Cieslak M, Cui Z, Davatzikos C, Fan Y, Gardner M, Kishton R, Kornfield SL, Larsen B, Li H, Linder I, Pines A, Pritschet L, Raznahan A, Roalf DR, Seidlitz J, Shafiei G, Shinohara RT, Wolf DH, Alexander-Bloch A, Satterthwaite TD, Shanmugan S | bioRxiv : the preprint server for biology | 39386637 | bioRxiv | 2024 Sep 29 |
| Toward personalized clinical interventions for perinatal depression: Leveraging precision functional mapping. | Pritschet L, Beydler E, Shanmugan S | Science advances | 40043108 | Sci Adv | 2025 Mar 7 |
| Tetraspanins: structure, dynamics, and principles of partner-protein recognition. | Susa KJ, Kruse AC, Blacklow SC | Trends in cell biology | 37783654 | Trends Cell Biol | 2024 Jun |
| A spatiotemporal map of co-receptor signaling networks underlying B cell activation. | Susa KJ, Bradshaw GA, Eisert RJ, Schilling CM, Kalocsay M, Blacklow SC, Kruse AC | Cell reports | 38850533 | Cell Rep | 2024 Jun 25 |
| UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability. | Tsai JM, Aguirre JD, Li YD, Brown J, Focht V, Kater L, Kempf G, Sandoval B, Schmitt S, Rutter JC, Galli P, Sandate CR, Cutler JA, Zou C, Donovan KA, Lumpkin RJ, Cavadini S, Park PMC, Sievers Q, Hatton C, Ener E, Regalado BD, Sperling MT, Słabicki M, Kim J, Zon R, Zhang Z, Miller PG, Belizaire R, Sperling AS, Fischer ES, Irizarry R, Armstrong SA, Thomä NH, Ebert BL | Molecular cell | 37478846 | Mol Cell | 2023 Aug 3 |
| Role of Estrogen Receptor α in Aging and Chronic Disease. | Isola JVV, Ko S, Ocañas SR, Stout MB | Advances in geriatric medicine and research | 37425648 | Adv Geriatr Med Res | 2023 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Stanford DR, Freeman WM | bioRxiv : the preprint server for biology | 37333391 | bioRxiv | 2023 Jun 7 |
| Specificity and efficiency of tamoxifen-mediated Cre induction is equivalent regardless of age. | Kellogg CM, Pham K, Ko S, Cox JEJ, Machalinski AH, Stout MB, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | iScience | 38058312 | iScience | 2023 Dec 15 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley KB, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | GeroScience | 37393197 | Geroscience | 2023 Oct |
| Flow Cytometry Analysis of Microglial Phenotypes in the Murine Brain During Aging and Disease. | Cox JEJ, Pham KD, Keck AW, Wright Z, Thomas MA, Freeman WM, Ocañas SR | Bio-protocol | 38948260 | Bio Protoc | 2024 Jun 20 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley K, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | bioRxiv : the preprint server for biology | 36945372 | bioRxiv | 2023 Jun 2 |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Thomas MA, Wright Z, Chucair-Elliott AJ, Freeman WM | Journal of neuroinflammation | 37587511 | J Neuroinflammation | 2023 Aug 16 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Hoolehan W, Kulpa AM, Stanford DR, Freeman WM | Epigenetics & chromatin | 37953264 | Epigenetics Chromatin | 2023 Nov 13 |
| Chromosomal and gonadal factors regulate microglial sex effects in the aging brain. | Ocañas SR, Ansere VA, Kellogg CM, Isola JVV, Chucair-Elliott AJ, Freeman WM | Brain research bulletin | 36804773 | Brain Res Bull | 2023 Apr |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Chucair-Elliott AJ, Freeman WM | bioRxiv : the preprint server for biology | 36945656 | bioRxiv | 2023 Jun 1 |
| Leveraging individual power to improve racial equity in academia. | Monari PK, Hammond ER, Malone CL, Cuarenta A, Hiura LC, Wallace KJ, Taylor L, Pradhan DS | Hormones and behavior | 37030195 | Horm Behav | 2023 Jun |
| Prairie vole pair bonding and plasticity of the social brain. | Hiura LC, Donaldson ZR | Trends in neurosciences | 36369029 | Trends Neurosci | 2023 Apr |
| A universal method for the purification of C2H2 zinc finger arrays. | Liang J, Azubel M, Wang G, Nie Y, Kornberg RD, Beel AJ, Mattei PJ | PloS one | 39903729 | PLoS One | 2025 |
| Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening. | Tan J, Shenker-Tauris N, Rodriguez-Hernaez J, Wang E, Sakellaropoulos T, Boccalatte F, Thandapani P, Skok J, Aifantis I, Fenyö D, Xia B, Tsirigos A | Nature biotechnology | 36624151 | Nat Biotechnol | 2023 Aug |
| Cellular dynamics in pig-to-human kidney xenotransplantation. | Pan W, Zhang W, Zheng B, Camellato BR, Stern J, Lin Z, Khodadadi-Jamayran A, Kim J, Sommer P, Khalil K, Weldon E, Bai J, Zhu Y, Meyn P, Heguy A, Mangiola M, Griesemer A, Keating BJ, Montgomery RA, Xia B, Boeke JD | Med (New York, N.Y.) | 38776915 | Med | 2024 Aug 9 |
| On the genetic basis of tail-loss evolution in humans and apes. | Xia B, Zhang W, Zhao G, Zhang X, Bai J, Brosh R, Wudzinska A, Huang E, Ashe H, Ellis G, Pour M, Zhao Y, Coelho C, Zhu Y, Miller A, Dasen JS, Maurano MT, Kim SY, Boeke JD, Yanai I | Nature | 38418917 | Nature | 2024 Feb |
| Dietary Interventions in Cancer Treatment and Response: A Comprehensive Review. | Mercier BD, Tizpa E, Philip EJ, Feng Q, Huang Z, Thomas RM, Pal SK, Dorff TB, Li YR | Cancers | 36291933 | Cancers (Basel) | 2022 Oct 20 |
| Moving the Needle Forward in Genomically-Guided Precision Radiation Treatment. | Tam A, Mercier BD, Thomas RM, Tizpa E, Wong IG, Shi J, Garg R, Hampel H, Gray SW, Williams T, Bazan JG, Li YR | Cancers | 38001574 | Cancers (Basel) | 2023 Nov 7 |
| Key takeaways for knowledge expansion of early-career scientists conducting Transdisciplinary Research in Energetics and Cancer (TREC): a report from the TREC Training Workshop 2022. | Kung CP, Skiba MB, Crosby EJ, Gorzelitz J, Kennedy MA, Kerr BA, Li YR, Nash S, Potiaumpai M, Kleckner AS, James DL, Coleman MF, Fairman CM, Galván GC, Garcia DO, Gordon MJ, His M, Hornbuckle LM, Kim SY, Kim TH, Kumar A, Mahé M, McDonnell KK, Moore J, Oh S, Sun X, Irwin ML | Journal of the National Cancer Institute. Monographs | 37139978 | J Natl Cancer Inst Monogr | 2023 May 4 |
| Ignorance is Bliss? A Case of Incidental Discovery of ATM Mutation in Prostate Cancer. | Tam A, Li YR | International journal of radiation oncology, biology, physics | 38049230 | Int J Radiat Oncol Biol Phys | 2024 Jan 1 |
| Experience From an Early Exposure Education Program in Radiation Oncology for High School and Undergraduate Students. | Tam A, Ladbury C, Glaser S, Amini A, Chen YJ, Li YR | Practical radiation oncology | 38810923 | Pract Radiat Oncol | 2024 Nov-Dec |
| Explainable Artificial Intelligence to Identify Dosimetric Predictors of Toxicity in Patients with Locally Advanced Non-Small Cell Lung Cancer: A Secondary Analysis of RTOG 0617. | Ladbury C, Li R, Danesharasteh A, Ertem Z, Tam A, Liu J, Hao C, Li R, McGee H, Sampath S, Williams T, Glaser S, Khasawneh M, Liao Z, Lee P, Ryckman J, Shaikh P, Amini A | International journal of radiation oncology, biology, physics | 37406826 | Int J Radiat Oncol Biol Phys | 2023 Dec 1 |
| Intermittent fasting interventions to leverage metabolic and circadian mechanisms for cancer treatment and supportive care outcomes. | Kalam F, James DL, Li YR, Coleman MF, Kiesel VA, Cespedes Feliciano EM, Hursting SD, Sears DD, Kleckner AS | Journal of the National Cancer Institute. Monographs | 37139971 | J Natl Cancer Inst Monogr | 2023 May 4 |
| Stem-cell states converge in multistage cutaneous squamous cell carcinoma development. | Taylor MA, Kandyba E, Halliwill K, Delrosario R, Khoroshkin M, Goodarzi H, Quigley D, Li YR, Wu D, Bollam SR, Mirzoeva OK, Akhurst RJ, Balmain A | Science (New York, N.Y.) | 38815020 | Science | 2024 May 31 |
| Grade 5 Radiation Necrosis After Whole-Brain Radiation Therapy. | Tam A, Li YR, Williams T, Yoon S | Practical radiation oncology | 38431371 | Pract Radiat Oncol | 2024 Mar-Apr |
| Evaluating participant engagement in a preconception cohort study in relation to the Dobbs decision. | Willis MD, Hoffman MN, Wang TR, Sabbath EL, Kuriyama AS, Wesselink AK, Wise LA | Paediatric and perinatal epidemiology | 38666636 | Paediatr Perinat Epidemiol | 2024 Sep |
| It's electric! An environmental equity perspective on the lifecycle of our energy sources. | Willis MD, Cushing LJ, Buonocore JJ, Deziel NC, Casey JA | Environmental epidemiology (Philadelphia, Pa.) | 37064423 | Environ Epidemiol | 2023 Apr |
| Wildfires increasingly threaten oil and gas wells in the western United States with disproportionate impacts on marginalized populations. | González DJX, Morello-Frosch R, Liu Z, Willis MD, Feng Y, McKenzie LM, Steiger BB, Wang J, Deziel NC, Casey JA | One earth (Cambridge, Mass.) | 39036466 | One Earth | 2024 Jun 21 |
| Residential Proximity to Oil and Gas Development and Mental Health in a North American Preconception Cohort Study: 2013-2023. | Willis MD, Campbell EJ, Selbe S, Koenig MR, Gradus JL, Nillni YI, Casey JA, Deziel NC, Hatch EE, Wesselink AK, Wise LA | American journal of public health | 38991173 | Am J Public Health | 2024 Sep |
| Evolutionary-Scale Enzymology Enables Biochemical Constant Prediction Across a Multi-Peaked Catalytic Landscape. | Muir DF, Asper GPR, Notin P, Posner JA, Marks DS, Keiser MJ, Pinney MM | bioRxiv : the preprint server for biology | 39484523 | bioRxiv | 2024 Oct 25 |
| Insulin-regulated aminopeptidase is required for water excretion in response to acute hypotonic stress. | Zuchowski Y, Carty J, Terker AS, Bock F, Trapani JB, Bhave G, Watts JA, Keller S, Zhang M, Zent R, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 36995926 | Am J Physiol Renal Physiol | 2023 Jun 1 |
| Rac1 promotes kidney collecting duct repair by mechanically coupling cell morphology to mitotic entry. | Bock F, Dong X, Li S, Viquez OM, Sha E, Tantengco M, Hennen EM, Plosa E, Ramezani A, Brown KL, Whang YM, Terker AS, Arroyo JP, Harrison DG, Fogo A, Brakebusch CH, Pozzi A, Zent R | Science advances | 38324689 | Sci Adv | 2024 Feb 9 |
| Kidney collecting duct-derived vasopressin is not essential for appropriate concentration or dilution of urine. | Zuchowski Y, Carty JS, Trapani JB, Watts JA, Bock F, Zhang M, Terker AS, Zent R, Delpire E, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 38695074 | Am J Physiol Renal Physiol | 2024 Jun 1 |
| Kir4.2 mediates proximal potassium effects on glutaminase activity and kidney injury. | Terker AS, Zhang Y, Arroyo JP, Cao S, Wang S, Fan X, Denton JS, Zhang MZ, Harris RC | Cell reports | 36543132 | Cell Rep | 2022 Dec 20 |
| Bicarbonate is the primary inducer of KCC3a expression in renal cortical B-type intercalated cells. | Ferdaus MZ, Terker AS, Koumangoye R, Wall SM, Delpire E | American journal of physiology. Cell physiology | 37036298 | Am J Physiol Cell Physiol | 2023 May 1 |
| VU6036720: The First Potent and Selective In Vitro Inhibitor of Heteromeric Kir4.1/5.1 Inward Rectifier Potassium Channels. | McClenahan SJ, Kent CN, Kharade SV, Isaeva E, Williams JC, Han C, Terker A, Gresham R 3rd, Lazarenko RM, Days EL, Romaine IM, Bauer JA, Boutaud O, Sulikowski GA, Harris R, Weaver CD, Staruschenko A, Lindsley CW, Denton JS | Molecular pharmacology | 35246480 | Mol Pharmacol | 2022 May |
| Low potassium activation of proximal mTOR/AKT signaling is mediated by Kir4.2. | Zhang Y, Bock F, Ferdaus M, Arroyo JP, L Rose K, Patel P, Denton JS, Delpire E, Weinstein AM, Zhang MZ, Harris RC, Terker AS | Nature communications | 38886379 | Nat Commun | 2024 Jun 17 |
| Disruption of mitochondrial electron transport impairs urinary concentration via AMPK-dependent suppression of aquaporin 2. | Carty JS, Bessho R, Zuchowski Y, Trapani JB, Davidoff O, Kobayashi H, Roland JT, Watts JA, Terker AS, Bock F, Arroyo JP, Haase VH | JCI insight | 39361429 | JCI Insight | 2024 Nov 22 |
| ESCRT recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like particles and enhanced antibody responses. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, Bjorkman PJ | bioRxiv : the preprint server for biology | 36597535 | bioRxiv | 2022 Dec 27 |
| ESCRT recruitment to SARS-CoV-2 spike induces virus-like particles that improve mRNA vaccines. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, West AP Jr, Bjorkman PJ | Cell | 37146611 | Cell | 2023 May 25 |
| N4BP1 coordinates ubiquitin-dependent crosstalk within the IκB kinase family to limit Toll-like receptor signaling and inflammation. | Gitlin AD, Maltzman A, Kanno Y, Heger K, Reja R, Schubert AF, Wierciszewski LJ, Pantua H, Kapadia SB, Harris SF, Webster JD, Newton K, Dixit VM | Immunity | 38697117 | Immunity | 2024 May 14 |
| Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | G3 (Bethesda, Md.) | 37552705 | G3 (Bethesda) | 2023 Sep 30 |
| Combined approaches, including long-read sequencing, address the diagnostic challenge of HYDIN in primary ciliary dyskinesia. | Fleming A, Galey M, Briggs L, Edwards M, Hogg C, John S, Wilkinson S, Quinn E, Rai R, Burgoyne T, Rogers A, Patel MP, Griffin P, Muller S, Carr SB, Loebinger MR, Lucas JS, Shah A, Jose R, Mitchison HM, Shoemark A, Miller DE, Morris-Rosendahl DJ | European journal of human genetics : EJHG | 38605126 | Eur J Hum Genet | 2024 Sep |
| Congenital pleuropulmonary blastoma in a newborn with a variant of uncertain significance in DICER1 evaluated by RNA-sequencing. | Lyle ANJ, Ohlsen TJD, Miller DE, Brown G, Waligorski N, Stark R, Taylor MR, Puia-Dumitrescu M | Maternal health, neonatology and perinatology | 36922881 | Matern Health Neonatol Perinatol | 2023 Mar 16 |
| Long-read sequencing of hundreds of diverse brains provides insight into the impact of structural variation on gene expression and DNA methylation. | Billingsley KJ, Meredith M, Daida K, Jerez PA, Negi S, Malik L, Genner RM, Moller A, Zheng X, Gibson SB, Mastoras M, Baker B, Kouam C, Paquette K, Jarreau P, Makarious MB, Moore A, Hong S, Vitale D, Shah S, Monlong J, Pantazis CB, Asri M, Shafin K, Carnevali P, Marenco S, Auluck P, Mandal A, Miga KH, Rhie A, Reed X, Ding J, Cookson MR, Nalls M, Singleton A, Miller DE, Chaisson M, Timp W, Gibbs JR, Phillippy AM, Kolmogorov M, Jain M, Sedlazeck FJ, Paten B, Blauwendraat C | bioRxiv : the preprint server for biology | 39764002 | bioRxiv | 2024 Dec 17 |
| Long-Read DNA and RNA Sequencing to Streamline Clinical Genetic Testing and Reduce Barriers to Comprehensive Genetic Testing. | Damaraju N, Miller AL, Miller DE | The journal of applied laboratory medicine | 38167773 | J Appl Lab Med | 2024 Jan 3 |
| A distant global control region is essential for normal expression of anterior HOXA genes during mouse and human craniofacial development. | Wilderman A, D'haene E, Baetens M, Yankee TN, Winchester EW, Glidden N, Roets E, Van Dorpe J, Janssens S, Miller DE, Galey M, Brown KM, Stottmann RW, Vergult S, Weaver KN, Brugmann SA, Cox TC, Cotney J | Nature communications | 38167838 | Nat Commun | 2024 Jan 2 |
| Beyond the exome: What's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | American journal of human genetics | 37541186 | Am J Hum Genet | 2023 Aug 3 |
| Heterozygous inversion breakpoints suppress meiotic crossovers by altering recombination repair outcomes. | Li H, Berent E, Hadjipanteli S, Galey M, Muhammad-Lahbabi N, Miller DE, Crown KN | PLoS genetics | 37053290 | PLoS Genet | 2023 Apr |
| Beyond the exome: what's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | ArXiv | 36713248 | ArXiv | 2023 Jan 18 |
| GENOME REPORT: Chromosome-scale genome assembly of the African spiny mouse ( Acomys cahirinus ). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | bioRxiv : the preprint server for biology | 37066261 | bioRxiv | 2023 Apr 5 |
| Concordance of Whole-Genome Long-Read Sequencing with Standard Clinical Testing for Prader-Willi and Angelman Syndromes. | Paschal CR, Zalusky MPG, Beck AE, Gillentine MA, Narayanan J, Damaraju N, Goffena J, Storz SHR, Miller DE | The Journal of molecular diagnostics : JMD | 39756651 | J Mol Diagn | 2025 Mar |
| Long-Read Sequencing is Required for Precision Diagnosis of Incontinentia Pigmenti. | Wojcik MH, Clark RD, Elias AF, Genetti CA, Madden JA, Simpson D, Golkar L, Zalusky MP, Miller AL, Rodriguez A, Goffena J, Dash CA, Damaraju N, Gibson SB, Storz SH, Anderson Z, Gustafson JA, Thiffault I, Farrow EG, Pastinen T, Lin J, Huang J, Beggs AH, Agrawal PB, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Miller DT, Miller DE | Research square | 39975911 | Res Sq | 2025 Jan 30 |
| Applications of long-read sequencing to Mendelian genetics. | Mastrorosa FK, Miller DE, Eichler EE | Genome medicine | 37316925 | Genome Med | 2023 Jun 14 |
| CFAP47 is a novel causative gene implicated in X-linked polycystic kidney disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MP, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | medRxiv : the preprint server for health sciences | 38633811 | medRxiv | 2024 Apr 5 |
| High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SHR, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | Genome research | 39358015 | Genome Res | 2024 Nov 20 |
| Diagnostic utility of DNA methylation analysis in genetically unsolved pediatric epilepsies and CHD2 episignature refinement. | LaFlamme CW, Rastin C, Sengupta S, Pennington HE, Russ-Hall SJ, Schneider AL, Bonkowski ES, Almanza Fuerte EP, Allan TJ, Zalusky MP, Goffena J, Gibson SB, Nyaga DM, Lieffering N, Hebbar M, Walker EV, Darnell D, Olsen SR, Kolekar P, Djekidel MN, Rosikiewicz W, McConkey H, Kerkhof J, Levy MA, Relator R, Lev D, Lerman-Sagie T, Park KL, Alders M, Cappuccio G, Chatron N, Demain L, Genevieve D, Lesca G, Roscioli T, Sanlaville D, Tedder ML, Gupta S, Jones EA, Weisz-Hubshman M, Ketkar S, Dai H, Worley KC, Rosenfeld JA, Chao HT, Undiagnosed Diseases Network, Neale G, Carvill GL, University of Washington Center for Rare Disease Research, Wang Z, Berkovic SF, Sadleir LG, Miller DE, Scheffer IE, Sadikovic B, Mefford HC | Nature communications | 39107278 | Nat Commun | 2024 Aug 6 |
| Clinical RNA sequencing clarifies variants of uncertain significance identified by prior testing. | Marquez J, Cech JN, Paschal CR, Dingmann B, Scott AI, Thies JM, Mills MR, Albert CM, Beck AE, Beckman E, Bonkowski ES, Earl DL, Lam CT, Mefford HC, Merritt JL 2nd, Nelson Z, Ohlsen TJ, Taylor MR, Perlman SJ, Rudzinski ER, Sikes MC, Waligorski N, Wenger TL, Adam MP, Mirzaa GM, Bennett JT, Glass IA, Sternen DL, Miller DE | Genetics in medicine open | 39484203 | Genet Med Open | 2024 |
| CFAP47 is Implicated in X-Linked Polycystic Kidney Disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MPG, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | Kidney international reports | 39698362 | Kidney Int Rep | 2024 Dec |
| Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson Z, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | medRxiv : the preprint server for health sciences | 38496498 | medRxiv | 2024 Mar 7 |
| Advances in the discovery and analyses of human tandem repeats. | Chaisson MJP, Sulovari A, Valdmanis PN, Miller DE, Eichler EE | Emerging topics in life sciences | 37905568 | Emerg Top Life Sci | 2023 Dec 14 |
| Characteristics, Genetic Testing, and Diagnoses of Infants with Neonatal Encephalopathy Not Due to Hypoxic Ischemic Encephalopathy: A Cohort Study. | Lenahan A, Mietzsch U, Wood TR, Callahan KP, Weiss EM, Miller DE, German K, Natarajan N, Puia-Dumitrescu M, Esposito V, Kolnik S, Law JB | The Journal of pediatrics | 37269901 | J Pediatr | 2023 Sep |
| Subdural hemorrhage, macrocephaly, rash, and developmental delay in an infant: A pathogenic variant in NLRP3 causes CINCA/NOMID. | Koti AS, Lanis A, Finlayson S, Canny S, Feldman EA, Miller DE, Rosenwasser N, Scott AA, Wong SC, Feldman KW | American journal of medical genetics. Part A | 37548074 | Am J Med Genet A | 2023 Dec |
| Panels, Exomes, Genomes, and More-Finding the Best Path Through the Diagnostic Odyssey. | Lenahan AL, Squire AE, Miller DE | Pediatric clinics of North America | 37704349 | Pediatr Clin North Am | 2023 Oct |
| 3-hour genome sequencing and targeted analysis to rapidly assess genetic risk. | Zalusky MP, Gustafson JA, Bohaczuk SC, Mallory B, Reed P, Wenger T, Beckman E, Chang IJ, Paschal CR, Buchan JG, Lockwood CM, Puia-Dumitrescu M, Garalde DR, Guillory J, Markham AJ, Bamshad MJ, Eichler EE, Stergachis AB, Miller DE | Genetics in medicine open | 39421454 | Genet Med Open | 2024 |
| Senolytic CAR T cells reverse aging-associated defects in intestinal regeneration and fitness. | Eskiocak O, Chowdhury S, Shah V, Nnuji-John E, Chung C, Boyer JA, Harris AS, Habel J, Sadelain M, Beyaz S, Amor C | bioRxiv : the preprint server for biology | 38529506 | bioRxiv | 2024 Mar 22 |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Nature aging | 38267706 | Nat Aging | 2024 Mar |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Research square | 37841853 | Res Sq | 2023 Sep 26 |
| Phenotypes and ontogeny of senescent hepatic stellate cells in metabolic dysfunction-associated steatohepatitis. | Yashaswini CN, Qin T, Bhattacharya D, Amor C, Lowe S, Lujambio A, Wang S, Friedman SL | Journal of hepatology | 38508241 | J Hepatol | 2024 Aug |
| Spatially clustered type I interferon responses at injury borderzones. | Ninh VK, Calcagno DM, Yu JD, Zhang B, Taghdiri N, Sehgal R, Mesfin JM, Chen CJ, Kalhor K, Toomu A, Duran JM, Adler E, Hu J, Zhang K, Christman KL, Fu Z, Bintu B, King KR | Nature | 39198639 | Nature | 2024 Sep |
| Systematic Review of Comparisons Between Plastic and Silicone Dilators: Revealing a Knowledge Gap. | Morgan O, Lopez MD, Martinez AJC, Marshall DC, Schnur JB | Sexual medicine reviews | 36030181 | Sex Med Rev | 2022 Oct |
| Prophylactic feeding tube placement for squamous cell carcinoma of the head and neck. | Kao DD, Ferrandino RM, Bauml JM, Marshall DC, Bakst R, Roof S, Park YA, Sigel KM | Oral oncology | 36326521 | Oral Oncol | 2022 Dec |
| Systematic Review of Comparisons Between Plastic and Silicone Dilators: Revealing a Knowledge Gap. | Morgan O, Lopez MD, Martinez AJC, Marshall DC, Schnur JB | Sexual medicine reviews | 37051960 | Sex Med Rev | 2022 Oct 1 |
| Effect of treatment interruptions on overall survival in patients with triple-negative breast cancer. | Chow R, Hasan S, Choi JI, Fox J, Chhabra AM, Marshall DC, Bakst RL, Simone CB 2nd | Journal of the National Cancer Institute | 37399094 | J Natl Cancer Inst | 2023 Sep 7 |
| Pharmaceutical industry payments and prescriptions of direct acting antiviral drugs for hepatitis C virus infection. | Murayama A, Sigel KM, Tarras ES, Marshall DC | Liver international : official journal of the International Association for the Study of the Liver | 39310996 | Liver Int | 2024 Dec |
| Female erectile tissues and sexual dysfunction after pelvic radiotherapy: A scoping review. | Marshall DC, Tarras ES, Ali A, Bloom J, Torres MA, Kahn JM | CA: a cancer journal for clinicians | 35298025 | CA Cancer J Clin | 2022 Jul |
| Trauma-Informed Radiation Therapy: Implementation and Evaluation of a Sensitive Practice Tool for Female Patients Undergoing Radiotherapy for Breast Cancer. | Marshall D, Green S, Jones BM, Starrs C, Montgomery GH, Minassian K, Wunder B, Force J, Schnur JB | Journal of the American College of Radiology : JACR | 36126825 | J Am Coll Radiol | 2022 Nov |
| Sexual health and treatment-related sexual dysfunction in sexual and gender minorities with prostate cancer. | Dickstein DR, Edwards CR, Lehrer EJ, Tarras ES, Gallitto M, Sfakianos J, Galsky MD, Stock R, Safer JD, Rosser BRS, Marshall DC | Nature reviews. Urology | 37217695 | Nat Rev Urol | 2023 Jun |
| Dose and fractionation regimen for brachytherapy boost in cervical cancer in the US. | Hsieh K, Bloom JR, Dickstein DR, Hsieh C, Marshall D, Ghiassi-Nejad Z, Raince J, Lymberis S, Chadha M, Gupta V | Gynecologic oncology | 38052109 | Gynecol Oncol | 2024 Jan |
| A qualitative analysis of female patient perspectives on physician communication regarding sexual dysfunction associated with pelvic radiotherapy. | Morgan O, Schnur J, Caban-Martinez AJ, Duenas-Lopez M, Huang M, Portelance L, Elkhadem A, Marshall DC | The journal of sexual medicine | 37037772 | J Sex Med | 2023 May 26 |
| Gender-Affirming Surgery and Cancer: Considerations for Radiation Oncologists for Pelvic Radiation in Transfeminine Patients. | Smart AC, Liu KX, Domogauer JD, Rodriguez-Russo C, Jones B, Dickstein DR, Mancias JD, Shiloh RY, Wintner A, Zietman AL, Marshall DC, Dyer MA, Russo AL | International journal of radiation oncology, biology, physics | 37230432 | Int J Radiat Oncol Biol Phys | 2023 Oct 1 |
| Effects of trauma history on cancer-related screening, diagnosis, and treatment. | Marshall DC, Carney LM, Hsieh K, Dickstein DR, Downes M, Chaudhari A, McVorran S, Montgomery GH, Schnur JB | The Lancet. Oncology | 37922933 | Lancet Oncol | 2023 Nov |
| Neutrophil-to-lymphocyte ratio as a predictor of surgical outcomes in head and neck cancer. | Kao DD, Ferrandino RM, Roof SA, Marshall DC, Khan MN, Chai RL, Park YA, Sigel KM | Head & neck | 37204760 | Head Neck | 2023 Aug |
| Associations between pharmaceutical industry payments to physicians and prescription of PARP inhibitors in the United States. | Murayama A, Marshall DC | Gynecologic oncology | 38147713 | Gynecol Oncol | 2024 Feb |
| Cuban American Perspectives on Sexual Dysfunction Following Pelvic Radiotherapy: A Qualitative Study. | Duenas-Lopez M, Morgan O, Marshall DC, Carney L, Caban-Martinez A, Huang M, Portelance L, Schnur J | Sexuality and disability | 38948491 | Sex Disabil | 2023 Dec |
| Association between rheumatoid arthritis and risk of radiotherapy toxicity: a systematic review. | Liebenberg N, McWilliam A, Kerns SL, Marshall DC, West CM | BMJ oncology | 39524982 | BMJ Oncol | 2024 Jan |
| Sex-Based Bias in Artificial Intelligence-Based Segmentation Models in Clinical Oncology. | Doo FX, Naranjo WG, Kapouranis T, Thor M, Chao M, Yang X, Marshall DC | Clinical oncology (Royal College of Radiologists (Great Britain)) | 39874747 | Clin Oncol (R Coll Radiol) | 2025 Mar |
| Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State. | Pitter KL, Grbovic-Huezo O, Joost S, Singhal A, Blum M, Wu K, Holm M, Ferrena A, Bhutkar A, Hudson A, Lecomte N, de Stanchina E, Chaligne R, Iacobuzio-Donahue CA, Pe'er D, Tammela T | Cancer research | 35952360 | Cancer Res | 2022 Oct 4 |
| Enhancer-activated RET confers protection against oxidative stress to KMT2A-rearranged acute myeloid leukemia. | Frett B, Stephens KE, Koss B, Melnyk S, Farrar J, Saha D, Roy Choudhury S | Cancer science | 38226414 | Cancer Sci | 2024 Mar |
| Resveratrol induces major histocompatibility complex class I antigen presentation in a STING-dependent and independent manner in melanoma. | Morehead LC, Koss B, Fil D, Heflin B, Garg S, Wallis KF, Tackett AJ, Miousse IR | Molecular immunology | 37837954 | Mol Immunol | 2023 Nov |
| CAR-T Therapies in Solid Tumors: Opportunities and Challenges. | Guzman G, Reed MR, Bielamowicz K, Koss B, Rodriguez A | Current oncology reports | 36853475 | Curr Oncol Rep | 2023 May |
| Chemical inhibition of DNA-PKcs impairs the activation and cytotoxicity of CD4(+) helper and CD8(+) effector T cells. | Azevedo-Pouly AC, Appell LE, Burdine L, Rogers LJ, Morehead LC, Fil D, Barker M, Rainwater RR, Waldrip ZJ, Koss B, Burdine MS | Immunology and cell biology | 37149747 | Immunol Cell Biol | 2023 Aug |
| Evolved histone tail regulates 53BP1 recruitment at damaged chromatin. | Kelliher JL, Folkerts ML, Shen KV, Song W, Tengler K, Stiefel CM, Lee SO, Dray E, Zhao W, Koss B, Pannunzio NR, Leung JW | Nature communications | 38821984 | Nat Commun | 2024 May 31 |
| CRISPR/dCas9-KRAB-Mediated Suppression of S100b Restores p53-Mediated Apoptosis in Melanoma Cells. | Roy Choudhury S, Heflin B, Taylor E, Koss B, Avaritt NL, Tackett AJ | Cells | 36899866 | Cells | 2023 Feb 24 |
| Synchrony and specificity in the maternal and the paternal brain: relations to oxytocin and vasopressin. | Atzil S, Hendler T, Zagoory-Sharon O, Winetraub Y, Feldman R | Journal of the American Academy of Child and Adolescent Psychiatry | 22840551 | J Am Acad Child Adolesc Psychiatry | 2012 Aug |
| Intravital 3D visualization and segmentation of murine neural networks at micron resolution. | Lautman Z, Winetraub Y, Blacher E, Yu C, Terem I, Chibukhchyan A, Marshel JH, de la Zerda A | Scientific reports | 35907928 | Sci Rep | 2022 Jul 30 |
| Real-Time Detection of Circulating Tumor Cells in Living Animals Using Functionalized Large Gold Nanorods. | Dutta R, Liba O, SoRelle ED, Winetraub Y, Ramani VC, Jeffrey SS, Sledge GW, de la Zerda A | Nano letters | 30895796 | Nano Lett | 2019 Apr 10 |
| In Vivo Molecular Optical Coherence Tomography of Lymphatic Vessel Endothelial Hyaluronan Receptors. | Si P, Sen D, Dutta R, Yousefi S, Dalal R, Winetraub Y, Liba O, de la Zerda A | Scientific reports | 28439123 | Sci Rep | 2017 Apr 24 |
| Noninvasive virtual biopsy using micro-registered optical coherence tomography (OCT) in human subjects. | Winetraub Y, Van Vleck A, Yuan E, Terem I, Zhao J, Yu C, Chan W, Do H, Shevidi S, Mao M, Yu J, Hong M, Blankenberg E, Rieger KE, Chu S, Aasi S, Sarin KY, de la Zerda A | Science advances | 38598626 | Sci Adv | 2024 Apr 12 |
| Gold Nanoprisms as Optical Coherence Tomography Contrast Agents in the Second Near-Infrared Window for Enhanced Angiography in Live Animals. | Si P, Yuan E, Liba O, Winetraub Y, Yousefi S, SoRelle ED, Yecies DW, Dutta R, de la Zerda A | ACS nano | 30422624 | ACS Nano | 2018 Dec 26 |
| Portraying emotions at their unfolding: a multilayered approach for probing dynamics of neural networks. | Raz G, Winetraub Y, Jacob Y, Kinreich S, Maron-Katz A, Shaham G, Podlipsky I, Gilam G, Soreq E, Hendler T | NeuroImage | 22285693 | Neuroimage | 2012 Apr 2 |
| Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. | Huang SY, Witzel T, Keil B, Scholz A, Davids M, Dietz P, Rummert E, Ramb R, Kirsch JE, Yendiki A, Fan Q, Tian Q, Ramos-Llordén G, Lee HH, Nummenmaa A, Bilgic B, Setsompop K, Wang F, Avram AV, Komlosh M, Benjamini D, Magdoom KN, Pathak S, Schneider W, Novikov DS, Fieremans E, Tounekti S, Mekkaoui C, Augustinack J, Berger D, Shapson-Coe A, Lichtman J, Basser PJ, Wald LL, Rosen BR | NeuroImage | 34464739 | Neuroimage | 2021 Nov |
| DIMOND: DIffusion Model OptimizatioN with Deep Learning. | Li Z, Li Z, Bilgic B, Lee HH, Ying K, Huang SY, Liao H, Tian Q | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 38634608 | Adv Sci (Weinh) | 2024 Jun |
| Age-related alterations in human cortical microstructure across the lifespan: Insights from high-gradient diffusion MRI. | Lee H, Lee HH, Ma Y, Eskandarian L, Gaudet K, Tian Q, Krijnen EA, Russo AW, Salat DH, Klawiter EC, Huang SY | Aging cell | 39118344 | Aging Cell | 2024 Nov |
| Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. | Fan Q, Eichner C, Afzali M, Mueller L, Tax CMW, Davids M, Mahmutovic M, Keil B, Bilgic B, Setsompop K, Lee HH, Tian Q, Maffei C, Ramos-Llordén G, Nummenmaa A, Witzel T, Yendiki A, Song YQ, Huang CC, Lin CP, Weiskopf N, Anwander A, Jones DK, Rosen BR, Wald LL, Huang SY | NeuroImage | 35217204 | Neuroimage | 2022 Jul 1 |
| Romer-EPTI: rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale dMRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | bioRxiv : the preprint server for biology | 38352481 | bioRxiv | 2024 Apr 1 |
| Revealing membrane integrity and cell size from diffusion kurtosis time dependence. | Lee HH, Novikov DS, Fieremans E, Huang SY | Magnetic resonance in medicine | 39473219 | Magn Reson Med | 2025 Mar |
| Romer-EPTI: Rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale diffusion MRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | Magnetic resonance in medicine | 39552568 | Magn Reson Med | 2025 Apr |
| High-fidelity, high-spatial-resolution diffusion magnetic resonance imaging of ex vivo whole human brain at ultra-high gradient strength with structured low-rank echo-planar imaging ghost correction. | Ramos-Llordén G, Lobos RA, Kim TH, Tian Q, Witzel T, Lee HH, Scholz A, Keil B, Yendiki A, Bilgiç B, Haldar JP, Huang SY | NMR in biomedicine | 36106429 | NMR Biomed | 2023 Feb |
| In vivo mapping of cellular resolution neuropathology in brain ischemia with diffusion MRI. | Wu D, Lee HH, Ba R, Turnbill V, Wang X, Luo Y, Walczak P, Fieremans E, Novikov DS, Martin LJ, Northington FJ, Zhang J | Science advances | 39018390 | Sci Adv | 2024 Jul 19 |
| Eddy current-induced artifact correction in high b-value ex vivo human brain diffusion MRI with dynamic field monitoring. | Ramos-Llordén G, Park DJ, Kirsch JE, Scholz A, Keil B, Maffei C, Lee HH, Bilgic B, Edlow BL, Mekkaoui C, Yendiki A, Witzel T, Huang SY | Magnetic resonance in medicine | 37753621 | Magn Reson Med | 2024 Feb |
| Perivascular space diffusivity and brain microstructural measures are associated with circadian time and sleep quality. | Brendstrup-Brix K, Ulv Larsen SM, Lee HH, Knudsen GM | Journal of sleep research | 38676409 | J Sleep Res | 2024 Dec |
| The influence of axonal beading and undulation on axonal diameter mapping. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | bioRxiv : the preprint server for biology | 37131702 | bioRxiv | 2023 Apr 19 |
| The effects of axonal beading and undulation on axonal diameter estimation from diffusion MRI: Insights from simulations in human axons segmented from three-dimensional electron microscopy. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | NMR in biomedicine | 38168082 | NMR Biomed | 2024 Apr |
| In vivo human neurite exchange imaging (NEXI) at 500 mT/m diffusion gradients. | Chan KS, Ma Y, Lee H, Marques JP, Olesen J, Coelho S, Novikov DS, Jespersen S, Huang SY, Lee HH | bioRxiv : the preprint server for biology | 39763747 | bioRxiv | 2024 Dec 17 |
| Scattering approach to diffusion quantifies axonal damage in brain injury. | Abdollahzadeh A, Coronado-Leija R, Lee HH, Sierra A, Fieremans E, Novikov DS | ArXiv | 39975429 | ArXiv | 2025 Jan 30 |
| Cross-sectional associations between drinking water arsenic and urinary inorganic arsenic in the United States: NHANES 2003-2014. | Spaur M, Lombard MA, Ayotte JD, Bostick BC, Chillrud SN, Navas-Acien A, Nigra AE | Environmental research | 36963713 | Environ Res | 2023 Jun 15 |
| Sociodemographic inequalities in uranium and other metals in community water systems across the USA, 2006-11: a cross-sectional study. | Ravalli F, Yu Y, Bostick BC, Chillrud SN, Schilling K, Basu A, Navas-Acien A, Nigra AE | The Lancet. Planetary health | 35397220 | Lancet Planet Health | 2022 Apr |
| US drinking water quality: exposure risk profiles for seven legacy and emerging contaminants. | Levin R, Villanueva CM, Beene D, Cradock AL, Donat-Vargas C, Lewis J, Martinez-Morata I, Minovi D, Nigra AE, Olson ED, Schaider LA, Ward MH, Deziel NC | Journal of exposure science & environmental epidemiology | 37739995 | J Expo Sci Environ Epidemiol | 2024 Jan |
| Impact of lowering the US maximum contaminant level on arsenic exposure: Differences by race, region, and water arsenic in NHANES 2003-2014. | Spaur M, Bostick BC, Chillrud SN, Factor-Litvak P, Navas-Acien A, Nigra AE | Environmental pollution (Barking, Essex : 1987) | 37331581 | Environ Pollut | 2023 Sep 15 |
| Nationwide geospatial analysis of county racial and ethnic composition and public drinking water arsenic and uranium. | Martinez-Morata I, Bostick BC, Conroy-Ben O, Duncan DT, Jones MR, Spaur M, Patterson KP, Prins SJ, Navas-Acien A, Nigra AE | Nature communications | 36460659 | Nat Commun | 2022 Dec 3 |
| Socioeconomic vulnerability and public water arsenic concentrations across the US. | Nigra AE, Cazacu-De Luca A, Navas-Acien A | Environmental pollution (Barking, Essex : 1987) | 36084737 | Environ Pollut | 2022 Nov 15 |
| Contribution of arsenic and uranium in private wells and community water systems to urinary biomarkers in US adults: The Strong Heart Study and the Multi-Ethnic Study of Atherosclerosis. | Spaur M, Glabonjat RA, Schilling K, Lombard MA, Galvez-Fernandez M, Lieberman-Cribbin W, Hayek C, Ilievski V, Balac O, Izuchukwu C, Patterson K, Basu A, Bostick BC, Chen Q, Sanchez T, Navas-Acien A, Nigra AE | Journal of exposure science & environmental epidemiology | 37558699 | J Expo Sci Environ Epidemiol | 2024 Jan |
| Geospatial Assessment of Racial/Ethnic Composition, Social Vulnerability, and Lead Water Service Lines in New York City. | Nigra AE, Lieberman-Cribbin W, Bostick BC, Chillrud SN, Carrión D | Environmental health perspectives | 37646509 | Environ Health Perspect | 2023 Aug |
| Regional and racial/ethnic inequalities in public drinking water fluoride concentrations across the US. | Hefferon R, Goin DE, Sarnat JA, Nigra AE | Journal of exposure science & environmental epidemiology | 37391608 | J Expo Sci Environ Epidemiol | 2024 Jan |
| Association of Water Arsenic With Incident Diabetes in U.S. Adults: The Multi-Ethnic Study of Atherosclerosis and the Strong Heart Study. | Spaur M, Galvez-Fernandez M, Chen Q, Lombard MA, Bostick BC, Factor-Litvak P, Fretts AM, Shea SJ, Navas-Acien A, Nigra AE | Diabetes care | 38656975 | Diabetes Care | 2024 Jul 1 |
| Public drinking water contaminant estimates for birth cohorts in the Environmental Influences on Child Health Outcomes (ECHO) Cohort. | Bloomquist TR, Spaur M, Cerna-Turoff I, Kress AM, Burjak M, Kupsco A, Casey JA, Herbstman JB, Nigra AE | Journal of exposure science & environmental epidemiology | 39098852 | J Expo Sci Environ Epidemiol | 2024 Aug 4 |
| Focused ultrasound for the treatment of glioblastoma. | Roberts JW, Powlovich L, Sheybani N, LeBlang S | Journal of neuro-oncology | 35267132 | J Neurooncol | 2022 Apr |
| Profiling of the immune landscape in murine glioblastoma following blood brain/tumor barrier disruption with MR image-guided focused ultrasound. | Sheybani ND, Witter AR, Garrison WJ, Miller GW, Price RJ, Bullock TNJ | Journal of neuro-oncology | 34734364 | J Neurooncol | 2022 Jan |
| Solid Tumor Treatment via Augmentation of Bioactive C6 Ceramide Levels with Thermally Ablative Focused Ultrasound. | Thim EA, Fox T, Deering T, Vass LR, Sheybani ND, Kester M, Price RJ | bioRxiv : the preprint server for biology | 36993445 | bioRxiv | 2023 Mar 23 |
| Applications of focused ultrasound-mediated blood-brain barrier opening. | Gorick CM, Breza VR, Nowak KM, Cheng VWT, Fisher DG, Debski AC, Hoch MR, Demir ZEF, Tran NM, Schwartz MR, Sheybani ND, Price RJ | Advanced drug delivery reviews | 36272635 | Adv Drug Deliv Rev | 2022 Dec |
| Barriers to immune cell infiltration in tumors. | Melssen MM, Sheybani ND, Leick KM, Slingluff CL Jr | Journal for immunotherapy of cancer | 37072352 | J Immunother Cancer | 2023 Apr |
| Letter to the editor regarding "Translation of focused ultrasound for blood-brain barrier opening in glioma". | Price RJ, Bullock TNJ, Sheybani ND | Journal of controlled release : official journal of the Controlled Release Society | 35780955 | J Control Release | 2022 Sep |
| Regenerative Potential of Mandibular Condyle Cartilage and Bone Cells Compared to Costal Cartilage Cells When Seeded in Novel Gelatin Based Hydrogels. | Chin AR, Taboas JM, Almarza AJ | Annals of biomedical engineering | 33155145 | Ann Biomed Eng | 2021 May |
| Rapid Interactions of Widespread Brain Networks Characterize Semantic Cognition. | Aboud KS, Nguyen TQ, Del Tufo SN, Chang C, Zald DH, Key AP, Price GR, Landman BA, Cutting LE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 36384679 | J Neurosci | 2023 Jan 4 |
| Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants. | Fray EJ, Wu F, Simonetti FR, Zitzmann C, Sambaturu N, Molina-Paris C, Bender AM, Liu PT, Ventura JD, Wiseman RW, O'Connor DH, Geleziunas R, Leitner T, Ribeiro RM, Perelson AS, Barouch DH, Siliciano JD, Siliciano RF | Cell host & microbe | 36809762 | Cell Host Microbe | 2023 Mar 8 |
| Proviral location affects cognate peptide-induced virus production and immune recognition of HIV-1-infected T cell clones. | Dragoni F, Kwaa AK, Traut CC, Veenhuis RT, Woldemeskel BA, Camilo-Contreras A, Raymond HE, Dykema AG, Scully EP, Rosecrans AM, Smith KN, Bushman FD, Simonetti FR, Blankson JN | The Journal of clinical investigation | 37698927 | J Clin Invest | 2023 Nov 1 |
| The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy. | McMyn NF, Varriale J, Fray EJ, Zitzmann C, MacLeod H, Lai J, Singhal A, Moskovljevic M, Garcia MA, Lopez BM, Hariharan V, Rhodehouse K, Lynn K, Tebas P, Mounzer K, Montaner LJ, Benko E, Kovacs C, Hoh R, Simonetti FR, Laird GM, Deeks SG, Ribeiro RM, Perelson AS, Siliciano RF, Siliciano JM | The Journal of clinical investigation | 37463049 | J Clin Invest | 2023 Sep 1 |
| Last in first out: SIV proviruses seeded later in infection are harbored in short-lived CD4(+) T cells. | Sambaturu N, Fray EJ, Wu F, Zitzmann C, Simonetti FR, Barouch DH, Siliciano JD, Siliciano RF, Ribeiro RM, Perelson AS, Molina-París C, Leitner T | bioRxiv : the preprint server for biology | 37961482 | bioRxiv | 2023 Nov 3 |
| Cognate antigen engagement induces HIV-1 expression in latently infected CD4(+) T cells from people on long-term antiretroviral therapy. | Moskovljevic M, Dragoni F, Board NL, Wu F, Lai J, Zhang H, White JR, Hoh R, Lynn K, Tebas P, Mounzer K, Deeks SG, Montaner LJ, Siliciano JD, Siliciano RF, Simonetti FR | Immunity | 39612916 | Immunity | 2024 Dec 10 |
| Learning from Persistent Viremia: Mechanisms and Implications for Clinical Care and HIV-1 Cure. | Wu F, Simonetti FR | Current HIV/AIDS reports | 37955826 | Curr HIV/AIDS Rep | 2023 Dec |
| Clonally expanded HIV-1 proviruses with 5'-leader defects can give rise to nonsuppressible residual viremia. | White JA, Wu F, Yasin S, Moskovljevic M, Varriale J, Dragoni F, Camilo-Contreras A, Duan J, Zheng MY, Tadzong NF, Patel HB, Quiambao JMC, Rhodehouse K, Zhang H, Lai J, Beg SA, Delannoy M, Kilcrease C, Hoffmann CJ, Poulin S, Chano F, Tremblay C, Cherian J, Barditch-Crovo P, Chida N, Moore RD, Summers MF, Siliciano RF, Siliciano JD, Simonetti FR | The Journal of clinical investigation | 36602866 | J Clin Invest | 2023 Mar 15 |
| Bispecific antibodies promote natural killer cell-mediated elimination of HIV-1 reservoir cells. | Board NL, Yuan Z, Wu F, Moskovljevic M, Ravi M, Sengupta S, Mun SS, Simonetti FR, Lai J, Tebas P, Lynn K, Hoh R, Deeks SG, Siliciano JD, Montaner LJ, Siliciano RF | Nature immunology | 38278966 | Nat Immunol | 2024 Mar |
| Midlife health crisis of former competitive athletes: dissecting their experiences via qualitative study. | Capin JJ, Wolf TL, Street JH, Smith CS, Lennon SL, Farquhar WB, Hunter SK, Piacentine LB | BMJ open sport & exercise medicine | 38736641 | BMJ Open Sport Exerc Med | 2024 |
| Prolonged quadriceps latency during gait early after anterior cruciate ligament injury predicts radiographic knee osteoarthritis 6-years after anterior cruciate ligament reconstruction. | Ito N, Capin JJ, Arhos EK, Wellsandt E, Pohlig RT, Buchanan TS, Snyder-Mackler L | Clinical biomechanics (Bristol, Avon) | 38945068 | Clin Biomech (Bristol) | 2024 Jul |
| Activity levels across the intensity spectrum in athletes: a systematic review protocol. | Capin JJ, Ridgers ND, Street JH, Fial A, Tomkinson GR | BMJ open sport & exercise medicine | 39161555 | BMJ Open Sport Exerc Med | 2024 |
| Long-term function, body composition and cardiometabolic health in midlife former athletes: a scoping review. | Street JH, Boos ZP, Fial A, Lennon SL, Smith CS, Creasy SA, Hunter SK, Farquhar WB, Capin JJ | BMJ open sport & exercise medicine | 37920279 | BMJ Open Sport Exerc Med | 2023 |
| A caste differentiation mutant elucidates the evolution of socially parasitic ants. | Trible W, Chandra V, Lacy KD, Limón G, McKenzie SK, Olivos-Cisneros L, Arsenault SV, Kronauer DJC | Current biology : CB | 36858043 | Curr Biol | 2023 Mar 27 |
| Enhanced Efficacy of Simultaneous PD-1 and PD-L1 Immune Checkpoint Blockade in High-Grade Serous Ovarian Cancer. | Wan C, Keany MP, Dong H, Al-Alem LF, Pandya UM, Lazo S, Boehnke K, Lynch KN, Xu R, Zarrella DT, Gu S, Cejas P, Lim K, Long HW, Elias KM, Horowitz NS, Feltmate CM, Muto MG, Worley MJ Jr, Berkowitz RS, Matulonis UA, Nucci MR, Crum CP, Rueda BR, Brown M, Liu XS, Hill SJ | Cancer research | 33158814 | Cancer Res | 2021 Jan 1 |
| Sialyl-Tn serves as a potential therapeutic target for ovarian cancer. | Al-Alem L, Prendergast JM, Clark J, Zarrella B, Zarrella DT, Hill SJ, Growdon WB, Pooladanda V, Spriggs DR, Cramer D, Elias KM, Nazer RI, Skates SJ, Behrens J, Dransfield DT, Rueda BR | Journal of ovarian research | 38566237 | J Ovarian Res | 2024 Apr 2 |
| Targeting Galectin 3 illuminates its contributions to the pathology of uterine serous carcinoma. | Matoba Y, Zarrella DT, Pooladanda V, Azimi Mohammadabadi M, Kim E, Kumar S, Xu M, Qin X, Ray LJ, Devins KM, Kumar R, Kononenko A, Eisenhauer E, Veillard IE, Yamagami W, Hill SJ, Sarosiek KA, Yeku OO, Spriggs DR, Rueda BR | British journal of cancer | 38438589 | Br J Cancer | 2024 May |
| Functional profiling of p53 and RB cell cycle regulatory proficiency suggests mechanism-driven molecular stratification in endometrial carcinoma. | Yang Z, Mogre S, Jun H, He R, Ghosh Chaudhary S, Bhattarai UR, Ho Sui SJ, Matulonis UA, Lazo S, Shetty A, Cameron A, Nguyen QD, Hill SJ | Cancer research communications | 39932274 | Cancer Res Commun | 2025 Feb 11 |
| Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1-AKT-p53 Interactions. | Lynch KN, Liu JF, Kesten N, Chow KH, Shetty A, He R, Afreen MF, Yuan L, Matulonis UA, Growdon WB, Muto MG, Horowitz NS, Feltmate CM, Worley MJ Jr, Berkowitz RS, Crum CP, Rueda BR, Hill SJ | Cancers | 34063609 | Cancers (Basel) | 2021 May 3 |
| The ORFIUS complex regulates ORC2 localization at replication origins. | Yang Z, Mogre S, He R, Berdan EL, Ho Sui SJ, Hill SJ | NAR cancer | 38288445 | NAR Cancer | 2024 Mar |
| Germline and Somatic Fumarate Hydratase Testing in Atypical Uterine Leiomyomata. | Kipnis LM, Breen KM, Koeller DR, Levine AS, Yang Z, Jun H, Tayob N, Stokes SM, Hayes CP, Ghazani AA, Hill SJ, Rana HQ | Cancer prevention research (Philadelphia, Pa.) | 38638033 | Cancer Prev Res (Phila) | 2024 May 2 |
| What happens when we ask? A phenomenological focus group on HIV prevention and sexual health education among emancipated foster care youth. | Opara I, Lizarraga A, Lardier DT, Herrera A, Garcia-Reid P, Reid RJ | Children and youth services review | 35910532 | Child Youth Serv Rev | 2022 Sep |
| Learning from community-based HIV prevention to inform control and mitigation of the COVID-19 pandemic. | Abrams JA, Rutledge J, Opara I | Preventive medicine | 36750159 | Prev Med | 2023 Apr |
| Strong Black Women: Linking Stereotypes, Stress, and Overeating Among a Sample of Black Female College Students. | Godbolt D, Opara I, Amutah-Onukagha N | Journal of black studies | 36710718 | J Black Stud | 2022 Sep |
| Ethnic Identity as a Moderator Between HIV Knowledge, Viral Hepatitis Knowledge, and Psychological Antecedents Among Racial-Ethnic Minority Youth Living in an Urban Community. | Opara I, Lardier DT Jr, Durkee MI, Garcia-Reid P, Reid RJ | Journal of racial and ethnic health disparities | 34041704 | J Racial Ethn Health Disparities | 2022 Aug |
| Testing the Factor Structure of the Brief Sense of Community Scale among Black Girls and the Relationship with Ethnic Identity, Empowerment and Social Support. | Opara I, Lardier DT, Garcia-Reid P, Reid RJ | Children and youth services review | 34305217 | Child Youth Serv Rev | 2021 Aug |
| Intersectional Effects of Sexual Orientation Concealment, Internalized Homophobia, and Gender Expression on Sexual Identity and HIV Risk Among Sexual Minority Men of Color: A Path Analysis. | Ramos SR, Lardier DT Jr, Opara I, Turpin RE, Boyd DT, Gutierrez JI Jr, Williams CN, Nelson LE, Kershaw T | The Journal of the Association of Nurses in AIDS Care : JANAC | 34101701 | J Assoc Nurses AIDS Care | 2021 Jul-Aug 01 |
| Ethnic Identity, Empowerment, Social Support and Sexual Risk Behaviors Among Black Adolescent Girls: Examining Drug Use as a Mediator. | Opara I, Rivera Rodas EI, Garcia-Reid P, Reid RJ | Child & adolescent social work journal : C & A | 35462639 | Child Adolesc Social Work J | 2022 Feb |
| Role of the Intersections of Gender, Race and Sexual Orientation in the Association between Substance Use Behaviors and Sexually Transmitted Infections in a National Sample of Adults with Recent Criminal Legal Involvement. | Harvey TD, Opara I, Wang EA | International journal of environmental research and public health | 35409785 | Int J Environ Res Public Health | 2022 Mar 30 |
| Intrapersonal psychological empowerment profiles on ethnic identity, social support, and lifetime drug use among Hispanic adolescent girls. | Opara I, Lardier DT Jr, Fernandez Y, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 32787746 | J Ethn Subst Abuse | 2022 Jul-Sep |
| Addressing Gendered Racism Against Black Girls Using a Strengths-Based Empowerment-Intersectional Framework for Sexual Health and Substance Use Prevention Programming. | Opara I, Martin R, Hill AV, Calhoun A | Health promotion practice | 37166152 | Health Promot Pract | 2023 Jul |
| A mixed-methods assessment of off-duty police shootings in a media-curated database. | Asabor EN, Lett E, Mosely B, Boone CA, Sundaresan S, Wong TA, Majumder MS | Health services research | 37276031 | Health Serv Res | 2023 Aug |
| Correction: Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 39474034 | Urban Rev | 2023 Sep |
| Effects of Brief Interventions on Internalizing Symptoms and Substance Use in Youth: A Systematic Review. | McDanal R, Parisi D, Opara I, Schleider JL | Clinical child and family psychology review | 34731373 | Clin Child Fam Psychol Rev | 2022 Jun |
| A latent profile analysis of psychological sense of community and ethnic identity among racial-ethnic minority young adults from the southwestern United States. | Lardier DT Jr, Opara I, Roach E | Journal of community psychology | 34402065 | J Community Psychol | 2022 Mar |
| Utilizing Community-Centered Approaches to Address Black Maternal Mortality. | Falako S, Okoli N, Boateng MO, Sandoval J, Gumudavelly D, Larsuel S, Opara I | Health education & behavior : the official publication of the Society for Public Health Education | 37525982 | Health Educ Behav | 2023 Aug |
| Adolescent Polysubstance Use and Co-Occurring Weapon Carrying, Bullying Victimization, and Depressive Symptomology: Patterns and Differences in the United States. | Weerakoon SM, Henson-Garcia M, Abraham A, Vidot DC, Messiah SE, Opara I | Child psychiatry and human development | 37477824 | Child Psychiatry Hum Dev | 2023 Jul 21 |
| A Systematic Review on Sexual Health and Drug Use Prevention Interventions for Black Girls. | Opara I, Pierre K, Assan MA, Scheinfeld L, Alves C, Cross K, Lizarraga A, Brawner B | International journal of environmental research and public health | 35328864 | Int J Environ Res Public Health | 2022 Mar 8 |
| Measuring Intrapersonal Psychological Empowerment and Ethnic Identity: Highlighting Strengths of Urban Black Girls. | Opara I, Lardier DT Jr, Garcia-Reid P, Reid RJ | Youth & society | 35813075 | Youth Soc | 2022 May |
| Psychological sense of community, community civic participation, and ethnic identity on social justice orientation and psychological empowerment between LGBQ and Non-LGBQ youth of color. | Lardier DT, Opara I, Brammer MK, Pinto SA, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 36855462 | J LGBT Youth | 2023 |
| Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 38463537 | Urban Rev | 2023 Sep |
| School Absenteeism and Neighborhood Deprivation and Threat: Utilizing the Child Opportunity Index to Assess for Neighborhood-Level Disparities in Passaic County, NJ. | Opara I, Thorpe D, Lardier DT Jr | Urban education | 39669403 | Urban Educ (Beverly Hills Calif) | 2024 Nov |
| Symptoms of distress during the COVID-19 pandemic in the United States. | Okafor CN, Asare M, Bautista KJ, Opara I | American journal of health studies | 34335012 | Am J Health Stud | 2021 |
| Understanding Neighborhoods' Impact on Youth Substance Use and Mental Health Outcomes in Paterson, New Jersey: Protocol for a Community-Based Participatory Research Study. | Opara I, R Leonard N, Thorpe D, Kershaw T | JMIR research protocols | 34047712 | JMIR Res Protoc | 2021 May 28 |
| The brief sense of community scale: Testing dimensionality and measurement invariance by gender among Hispanic/Latinx youth. | Lardier DT Jr, Opara I, Cantu I, Garcia-Reid P, Reid RJ | Journal of community psychology | 33938003 | J Community Psychol | 2022 Jan |
| How Black Teen Girls Navigate Social Media to Form Romantic Relationships. | Weser VU, Opara I, Sands BE, Fernandes CF, Hieftje KD | Social media + society | 34858631 | Soc Media Soc | 2021 Jul 1 |
| Alcohol Use Cravings as a Mediator Between Associated Risk Factors on Increased Alcohol Use among Youth Adults in New York During the COVID-19 Pandemic. | Opara I, Malik S, Lardier DT Jr, Gamble-George J, Kelly RJ, Okafor CN, Greene RN, Parisi D | Alcoholism treatment quarterly | 34898835 | Alcohol Treat Q | 2021 |
| Coping in the Time of COVID-19: Buffering Stressors With Coping Strategies. | Okafor CN, Bautista KJ, Asare M, Opara I | Journal of loss & trauma | 35173557 | J Loss Trauma | 2022 |
| Parenting profiles of academic and racial socialization: Associations with academic engagement and academic self-beliefs of African American adolescents. | Metzger IW, Cooper SM, Griffin CB, Golden AR, Opara I, Ritchwood TD | Journal of school psychology | 32988462 | J Sch Psychol | 2020 Oct |
| Mental Health Burden among Black Adolescents: The Need for Better Assessment, Diagnosis and Treatment Engagement. | Opara I, Weissinger GM, Lardier DT Jr, Lanier Y, Carter S, Brawner BM | Social work in mental health | 34248423 | Soc Work Ment Health | 2021 |
| Increasing HIV/AIDS knowledge among urban ethnic minority youth: Findings from a community-based prevention intervention program. | Lardier DT Jr, Opara I, Reid RJ, Garcia-Reid P, Herrera A, Cantu I | Journal of HIV/AIDS & social services | 34177389 | J HIV AIDS Soc Serv | 2021 |
| Structural indicators of suicide: an exploration of state-level risk factors among Black and White people in the United States, 2015-2019. | Robertson RA, Standley CJ, Gunn JF 3rd, Opara I | Journal of public mental health | 36185543 | J Public Ment Health | 2022 Feb 10 |
| Feeling Invisible and Unheard: A Qualitative Exploration of Gendered-Racist Stereotypes Influence on Sexual Decision Making and Mistreatment of Black Teen Girls. | Opara I, Weser V, Sands B, Fernandes CF, Hussett-Richardson S, Hieftje K | Youth & society | 35812173 | Youth Soc | 2022 May |
| The Association Between Racial Attitudes, Alcohol Use and Mood Disorders Among Black Adolescents. | Opara I, Lardier DT, Boyd D, Boateng ACO, Brawner BM | Journal of prevention (2022) | 36156761 | J Prev (2022) | 2023 Feb |
| Sexual Health and Drug Use Prevention for Black Girls (The Dreamer Girls Project): Protocol for an Intervention Development. | Opara I, Gabriel C, Duran-Becerra B, Bond K, Hill AV, Hussett-Richardson S, Alves C, Kershaw T | JMIR research protocols | 37556188 | JMIR Res Protoc | 2023 Aug 9 |
| Black Adolescent Females' Perceptions of PrEP for HIV Risk Reduction. | Budge M, Opara I, Weser VU, Sands BE, Hieftje KD | Journal of the International Association of Providers of AIDS Care | 37853731 | J Int Assoc Provid AIDS Care | 2023 Jan-Dec |
| Young Adults at the National Epicenter of the COVID-19 Outbreak: Understanding the Impact and Future Challenges of Social Distancing on Mental Health Outcomes. | Malik S, Opara I, Lardier DT Jr, Younger J, Greene RN | International journal of environmental research and public health | 38248498 | Int J Environ Res Public Health | 2023 Dec 26 |
| HIV knowledge and protective factors among racial-ethnic minority youth: Moderation by Ethnic identity and LGBQ+ identity. | Lardier DT Jr, Opara I, Asabor EN, Bell F, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 39131490 | J LGBT Youth | 2024 |
| "It Makes Me Feel like I Can Make a Difference": A Qualitative Exploration of Peer Mentoring with Black and Hispanic High School Students. | Opara I, Metzger IW, Dawoud S, Pierre K, Assan MA, Garcia-Reid P, Reid RJ | Youth (Basel, Switzerland) | 39555142 | Youth (Basel) | 2023 Jun |
| Associations between Parent-Child Communication on Sexual Health and Drug Use and Use of Drugs during Sex among Urban Black Youth. | Boyd DT, Opara I, Quinn CR, Waller B, Ramos SR, Duncan DT | International journal of environmental research and public health | 34068128 | Int J Environ Res Public Health | 2021 May 13 |
| A Spatial Analysis of Alcohol Outlet Density Type, Abandoned Properties, and Police Calls on Aggravated Assault Rates in a Northeastern U.S. City. | Lardier DT, Opara I, Lin Y, Roach E, Herrera A, Garcia-Reid P, Reid RJ | Substance use & misuse | 34210249 | Subst Use Misuse | 2021 |
| Relationship between suicide ideation and attempts, bully victimization, dating violence, and depressive symptoms among Black and Hispanic youth. | Opara I, Weerakoon SM, Brooks Stephens JR, Choe T, Gunn JF 3rd, Thrasher SS | Suicide & life-threatening behavior | 37933468 | Suicide Life Threat Behav | 2025 Feb |
| Teaching Note-#BlackGirlsMatter and the Social Work Curriculum: Integrating Intersectionality Within Social Work Education. | Opara I, Brown TL | Journal of social work education | 36874948 | J Soc Work Educ | 2023 |
| Racial/ethnic disparities in PM(2.5)-attributable cardiovascular mortality burden in the United States. | Ma Y, Zang E, Opara I, Lu Y, Krumholz HM, Chen K | Nature human behaviour | 37653149 | Nat Hum Behav | 2023 Dec |
| Racial Differences in 1-Year Mortality after Hospitalization for Chronic Obstructive Pulmonary Disease in the United States. | Jain S, Priya A, Pekow P, Spitzer K, Walkey AJ, Opara I, Krumholz HM, Lindenauer PK | Annals of the American Thoracic Society | 37943953 | Ann Am Thorac Soc | 2024 Apr |
| Reframing Sexual Health for Black Girls and Women in HIV/STI Prevention Work: Highlighting the Role of Identity and Interpersonal Relationships. | Opara I, Abrams JA, Cross K, Amutah-Onukagha N | International journal of environmental research and public health | 34831855 | Int J Environ Res Public Health | 2021 Nov 18 |
| Sociopolitical control as a mediator between ethnic identity and social support on 30-day drug use among black girls. | Opara I, Hill AV, Calhoun A, Francois M, Alves C, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 34533434 | J Ethn Subst Abuse | 2023 Jul-Sep |
| Assessing the Prevalence Rates of Internalizing Symptomatology Among Multiracial Adolescents in the United States: A Systematic Review. | Henson-García M, Weerakoon SM, Duncan C, Choe T, Opara I, A Baker K, L Sterling K, Messiah SE | Child psychiatry and human development | 38042957 | Child Psychiatry Hum Dev | 2023 Dec 2 |
| Brief Parent-Child Substance Use Education Intervention for Black Families in Urban Cities in New Jersey: Protocol for a Formative Study Design. | Opara I, Pierre K, Cayo S, Aneni K, Mwai C, Hogue A, Becker S | JMIR research protocols | 38722676 | JMIR Res Protoc | 2024 May 9 |
| Examining the integrated model of the interpersonal-psychological theory of suicide and intersectionality theory among Black male adolescents. | Douglas RD, Alli JO, Gaylord-Harden N, Opara I, Gilreath T | Suicide & life-threatening behavior | 38411036 | Suicide Life Threat Behav | 2025 Feb |
| Empowerment in prevention: a qualitative inquiry into Black girl-centred strategies for reducing HIV/STI and drug misuse risk. | Opara I, Asabor E, Rutledge J, Brooks Stephens JR, Cayo S, Duran-Becerra B, Abrams J | Sexual and reproductive health matters | 39876818 | Sex Reprod Health Matters | 2024 Dec |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | Genome research | 39653420 | Genome Res | 2024 Dec 23 |
| Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. | Isaac RS, Tullius TW, Hansen KG, Dubocanin D, Couvillion M, Stergachis AB, Churchman LS | Nature structural & molecular biology | 38347148 | Nat Struct Mol Biol | 2024 Mar |
| Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition. | Vollger MR, Korlach J, Eldred KC, Swanson E, Underwood JG, Cheng YH, Ranchalis J, Mao Y, Blue EE, Schwarze U, Munson KM, Saunders CT, Wenger AM, Allworth A, Chanprasert S, Duerden BL, Glass I, Horike-Pyne M, Kim M, Leppig KA, McLaughlin IJ, Ogawa J, Rosenthal EA, Sheppeard S, Sherman SM, Strohbehn S, Yuen AL, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Reh TA, Byers PH, Bamshad MJ, Hisama FM, Jarvik GP, Sancak Y, Dipple KM, Stergachis AB | bioRxiv : the preprint server for biology | 37808736 | bioRxiv | 2023 Sep 27 |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | Genome research | 38849157 | Genome Res | 2024 Nov 20 |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | bioRxiv : the preprint server for biology | 37131601 | bioRxiv | 2023 Dec 11 |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | bioRxiv : the preprint server for biology | 39026856 | bioRxiv | 2024 Jul 13 |
| Clinical utility of brain MRS imaging of patients with adult-onset non-cirrhotic hyperammonemia. | Stergachis AB, Krier JB, Merugumala SK, Berry GT, Lin AP | Molecular genetics and metabolism reports | 33763331 | Mol Genet Metab Rep | 2021 Jun |
| Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions. | Girskis KM, Stergachis AB, DeGennaro EM, Doan RN, Qian X, Johnson MB, Wang PP, Sejourne GM, Nagy MA, Pollina EA, Sousa AMM, Shin T, Kenny CJ, Scotellaro JL, Debo BM, Gonzalez DM, Rento LM, Yeh RC, Song JHT, Beaudin M, Fan J, Kharchenko PV, Sestan N, Greenberg ME, Walsh CA | Neuron | 34478631 | Neuron | 2021 Oct 20 |
| The regulatory potential of transposable elements in maize. | Bubb KL, Hamm MO, Tullius TW, Min JK, Ramirez-Corona B, Mueth NA, Ranchalis J, Mao Y, Bergstrom EJ, Vollger MR, Trapnell C, Cuperus JT, Stergachis AB, Queitsch C | bioRxiv : the preprint server for biology | 39026747 | bioRxiv | 2025 Jan 31 |
| RNA polymerases reshape chromatin architecture and couple transcription on individual fibers. | Tullius TW, Isaac RS, Dubocanin D, Ranchalis J, Churchman LS, Stergachis AB | Molecular cell | 39191261 | Mol Cell | 2024 Sep 5 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis A, O'Toole E, Biggins S | bioRxiv : the preprint server for biology | 39975131 | bioRxiv | 2025 Jan 27 |
| Full-length isoform sequencing for resolving the molecular basis of Charcot-Marie-Tooth 2A. | Stergachis AB, Blue EE, Gillentine MA, Wang LK, Schwarze U, Cortés AS, Ranchalis J, Allworth A, Bland AE, Chanprasert S, Chen J, Doherty D, Folta AB, Glass I, Horike-Pyne M, Huang AY, Khan AT, Leppig KA, Miller DE, Mirzaa G, Parhin A, Raskind W, Rosenthal EA, Sheppeard S, Strohbehn S, Sybert VP, Tran TT, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Byers PH, Nelson SF, Bamshad MJ, Dipple KM, Jarvik GP, Hoppins S, Hisama FM | bioRxiv : the preprint server for biology | 36798371 | bioRxiv | 2023 Feb 7 |
| Dominant-negative variant in SLC1A4 causes an autosomal dominant epilepsy syndrome. | Pujol-Giménez J, Mirzaa G, Blue EE, Albano G, Miller DE, Allworth A, Bennett JT, Byers PH, Chanprasert S, Chen J, Doherty D, Folta AB, Gillentine MA, Glass I, Hing A, Horike-Pyne M, Leppig KA, Parhin A, Ranchalis J, Raskind WH, Rosenthal EA, Schwarze U, Sheppeard S, Strohbehn S, Sybert VP, Timms A, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG)a, Undiagnosed Diseases Network (UDN), Bamshad MJ, Hisama FM, Jarvik GP, Dipple KM, Hediger MA, Stergachis AB | Annals of clinical and translational neurology | 37194416 | Ann Clin Transl Neurol | 2023 Jun |
| RNA polymerases reshape chromatin and coordinate transcription on individual fibers. | Tullius TW, Isaac RS, Ranchalis J, Dubocanin D, Churchman LS, Stergachis AB | bioRxiv : the preprint server for biology | 38187631 | bioRxiv | 2023 Dec 23 |
| Stable centromere association of the yeast histone variant Cse4 requires its essential N-terminal domain. | Popchock AR, Hedouin S, Mao Y, Asbury CL, Stergachis AB, Biggins S | The EMBO journal | 39809842 | EMBO J | 2025 Mar |
| Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics. | Nam AS, Chaligne R, Landau DA | Nature reviews. Genetics | 32807900 | Nat Rev Genet | 2021 Jan |
| Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation. | Nam AS, Dusaj N, Izzo F, Murali R, Myers RM, Mouhieddine TH, Sotelo J, Benbarche S, Waarts M, Gaiti F, Tahri S, Levine R, Abdel-Wahab O, Godley LA, Chaligne R, Ghobrial I, Landau DA | Nature genetics | 36138229 | Nat Genet | 2022 Oct |
| CALR-mutated cells are vulnerable to combined inhibition of the proteasome and the endoplasmic reticulum stress response. | Jutzi JS, Marneth AE, Jiménez-Santos MJ, Hem J, Guerra-Moreno A, Rolles B, Bhatt S, Myers SA, Carr SA, Hong Y, Pozdnyakova O, van Galen P, Al-Shahrour F, Nam AS, Mullally A | Leukemia | 36473980 | Leukemia | 2023 Feb |
| Structural parasitology of the malaria parasite Plasmodium falciparum. | Anton L, Cobb DW, Ho CM | Trends in biochemical sciences | 34887149 | Trends Biochem Sci | 2022 Feb |
| Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition. | Ho CM, Jih J, Lai M, Li X, Goldberg DE, Beck JR, Zhou ZH | Proceedings of the National Academy of Sciences of the United States of America | 34446549 | Proc Natl Acad Sci U S A | 2021 Aug 31 |
| Medication Affordability and Self-Advocacy Among Racial/Ethnic Minorities in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of general internal medicine | 35641727 | J Gen Intern Med | 2023 Jan |
| Comparing the Use of DynaMed and UpToDate by Physician Trainees in Clinical Decision-Making: A Randomized Crossover Trial. | Baxter SL, Lander L, Clay B, Bell J, Hansen K, Walker A, Tai-Seale M | Applied clinical informatics | 35108739 | Appl Clin Inform | 2022 Jan |
| Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. | Lee CS, Krakauer C, Su YR, Walker RL, Blazes M, McCurry SM, Bowen JD, McCormick WC, Lee AY, Boyko EJ, O'Hare AM, Larson EB, Crane PK | American journal of ophthalmology | 36513155 | Am J Ophthalmol | 2023 May |
| Gaps in standards for integrating artificial intelligence technologies into ophthalmic practice. | Baxter SL, Lee AY | Current opinion in ophthalmology | 34231531 | Curr Opin Ophthalmol | 2021 Sep 1 |
| Social determinants associated with loss of an eye in the United States using the All of Us nationwide database. | Chan AX, Radha Saseendrakumar B, Ozzello DJ, Ting M, Yoon JS, Liu CY, Korn BS, Kikkawa DO, Baxter SL | Orbit (Amsterdam, Netherlands) | 34969350 | Orbit | 2022 Dec |
| Investigation of associations between Piezo1 mechanoreceptor gain-of-function variants and glaucoma-related phenotypes in humans and mice. | Baxter SL, Keenan WT, Athanas AJ, Proudfoot JA, Zangwill LM, Ayyagari R, Liebmann JM, Girkin CA, Patapoutian A, Weinreb RN | Scientific reports | 33149214 | Sci Rep | 2020 Nov 4 |
| Impact of Pupil Dilation on Optical Coherence Tomography Angiography Retinal Microvasculature in Healthy Eyes. | Villatoro G, Bowd C, Proudfoot JA, Manalastas PIC, Nguyen KD, Hou H, Penteado RC, Li AJ, Moghimi S, Ghahari E, Weinreb RN, Zangwill LM | Journal of glaucoma | 32890106 | J Glaucoma | 2020 Nov |
| Data Sources for Evaluating Health Disparities in Ophthalmology: Where We Are and Where We Need to Go. | Baxter SL, Nwanyanwu K, Legault G, Lee AY | Ophthalmology | 36058733 | Ophthalmology | 2022 Oct |
| Usability and Clinician Acceptance of a Deep Learning-Based Clinical Decision Support Tool for Predicting Glaucomatous Visual Field Progression. | Chen JS, Baxter SL, van den Brandt A, Lieu A, Camp AS, Do JL, Welsbie DS, Moghimi S, Christopher M, Weinreb RN, Zangwill LM | Journal of glaucoma | 36877820 | J Glaucoma | 2023 Mar 1 |
| Impact of COVID-19 on the Delivery of Eye Care to Uninsured Diabetic Patients at a Student-Run Free Clinic: A Comprehensive Evaluation of Eye Clinic Performance. | Chuter BG, Lieu A, Dayao JKO, Bu JJ, Chen K, Nishihara T, Baxter SL | Journal of student-run clinics | 36890867 | J Stud Run Clin | 2022 Dec 20 |
| Racial Disparities in Barriers to Care for Patients With Diabetic Retinopathy in a Nationwide Cohort. | Huang BB, Radha Saseendrakumar B, Delavar A, Baxter SL | Translational vision science & technology | 36928128 | Transl Vis Sci Technol | 2023 Mar 1 |
| Associations of smoking and alcohol consumption with the development of open angle glaucoma: a retrospective cohort study. | Mahmoudinezhad G, Nishida T, Weinreb RN, Baxter SL, Chang AC, Nikkhoy N, Walker E, Liebmann JM, Girkin CA, Moghimi S | BMJ open | 37793935 | BMJ Open | 2023 Oct 4 |
| Social determinants of health and health disparities in glaucoma: A review. | Acuff K, Wu JH, Varkhedi V, Baxter SL | Clinical & experimental ophthalmology | 38385607 | Clin Exp Ophthalmol | 2024 Apr |
| Evaluation of bias and gender/racial concordance based on sentiment analysis of narrative evaluations of clinical clerkships using natural language processing. | Bhanvadia S, Radha Saseendrakumar B, Guo J, Spadafore M, Daniel M, Lander L, Baxter SL | BMC medical education | 38491461 | BMC Med Educ | 2024 Mar 15 |
| Implementation Mapping of the Collaborative University of California Teleophthalmology Initiative (CUTI): A Qualitative Study Using the Exploration, Preparation, Implementation, and Sustainment (EPIS) Framework. | Radgoudarzi N, Gregg C, Quackenbush Q, Yiu G, Freeby M, Su G, Baxter S, Thorne C, Willard-Grace R | Cureus | 39119397 | Cureus | 2024 Jul |
| Association Between Glucagon-Like Peptide-1 Receptor Agonists Exposure and Intraocular Pressure Change: GLP-1 Receptor Agonists and Intraocular Pressure Change. | Hallaj S, Halfpenny W, Chuter BG, Weinreb RN, Baxter SL, Cui QN | American journal of ophthalmology | 39237049 | Am J Ophthalmol | 2025 Jan |
| Ethical considerations for large language models in ophthalmology. | Kalaw FGP, Baxter SL | Current opinion in ophthalmology | 39259616 | Curr Opin Ophthalmol | 2024 Nov 1 |
| Evaluating the neuroprotective impact of senolytic drugs on human vision. | El-Nimri NW, Moore SM, Zangwill LM, Proudfoot JA, Weinreb RN, Skowronska-Krawczyk D, Baxter SL | Scientific reports | 33303874 | Sci Rep | 2020 Dec 10 |
| Data Sciences and Visual Health Disparities. | Legault G, Nwanyanwu K, Baxter SL | Ophthalmology | 36058740 | Ophthalmology | 2022 Oct |
| Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. | Kalaw FGP, Tavakoli K, Baxter SL | Ophthalmology science | 38025157 | Ophthalmol Sci | 2023 Dec |
| Gender Disparities in Depression, Stress, and Social Support Among Glaucoma Patients. | Delavar A, Bu JJ, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Translational vision science & technology | 38149963 | Transl Vis Sci Technol | 2023 Dec 1 |
| Effects of Smoking on Optic Nerve Head Microvasculature Density in Glaucoma. | Eslani M, Nishida T, Weinreb RN, Baxter S, Mahmoudinezhad G, Kamalipour A, Yarmohammadi A, Zangwill LM, Moghimi S | Journal of glaucoma | 35882030 | J Glaucoma | 2022 Sep 1 |
| Towards effective data sharing in ophthalmology: data standardization and data privacy. | Halfpenny W, Baxter SL | Current opinion in ophthalmology | 35819893 | Curr Opin Ophthalmol | 2022 Sep 1 |
| Proactive Decision Support for Glaucoma Treatment: Predicting Surgical Interventions with Clinically Available Data. | Christopher M, Gonzalez R, Huynh J, Walker E, Radha Saseendrakumar B, Bowd C, Belghith A, Goldbaum MH, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Weinreb RN, Baxter SL, Zangwill LM | Bioengineering (Basel, Switzerland) | 38391627 | Bioengineering (Basel) | 2024 Jan 30 |
| Barriers to Extracting and Harmonizing Glaucoma Testing Data: Gaps, Shortcomings, and the Pursuit of FAIRness. | Radgoudarzi N, Hallaj S, Boland MV, Stagg B, Wang SY, Xu B, Swaminathan SS, Brown EN, Chen A, Sun CQ, Amarasekera DC, Myers JS, Saifee M, Halfpenny W, Dirkes K, Zangwill L, Goetz KE, Hribar M, Baxter SL | Ophthalmology science | 39429240 | Ophthalmol Sci | 2024 Nov-Dec |
| Glaucoma Detection and Feature Identification via GPT-4V Fundus Image Analysis. | Jalili J, Jiravarnsirikul A, Bowd C, Chuter B, Belghith A, Goldbaum MH, Baxter SL, Weinreb RN, Zangwill LM, Christopher M | Ophthalmology science | 39877464 | Ophthalmol Sci | 2025 Mar-Apr |
| Relationship Between Glaucoma and Chronic Stress Quantified by Allostatic Load Score in the All of Us Research Program. | Yoo K, Lee C, Baxter SL, Xu BY | American journal of ophthalmology | 39271092 | Am J Ophthalmol | 2025 Jan |
| Predictive Analytics for Glaucoma Using Data From the All of Us Research Program. | Baxter SL, Saseendrakumar BR, Paul P, Kim J, Bonomi L, Kuo TT, Loperena R, Ratsimbazafy F, Boerwinkle E, Cicek M, Clark CR, Cohn E, Gebo K, Mayo K, Mockrin S, Schully SD, Ramirez A, Ohno-Machado L, All of Us Research Program Investigators | American journal of ophthalmology | 33497675 | Am J Ophthalmol | 2021 Jul |
| Internal carotid artery aneurysm presenting as diplopia via telemedicine during COVID-19. | Baxter SL, Kuo DE, Robbins SL | Journal of telemedicine and telecare | 33412986 | J Telemed Telecare | 2022 May |
| Associations between healthcare utilization and access and diabetic retinopathy complications using All of Us nationwide survey data. | Chan AX, McDermott Iv JJ, Lee TC, Ye GY, Shahrvini B, Radha Saseendrakumar B, Baxter SL | PloS one | 35704625 | PLoS One | 2022 |
| Healthcare Access and Utilization Among Glaucoma Patients in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of glaucoma | 36223287 | J Glaucoma | 2023 Jan 1 |
| Implementing clinical informatics tools for primary care-based diabetic retinopathy screening. | Baxter SL, Quackenbush Q, Cerda J, Gregg C, Millen M, Thorne C | The American journal of managed care | 36252175 | Am J Manag Care | 2022 Oct 1 |
| Ocular Health and National Data Standards: A Case for Including Visual Acuity in the United States Core Data for Interoperability (USCDI). | Baxter SL, Reed AA, Maa A, Boland MV, Borkar DS, Brown EN, Lum F, Goetz KE | Ophthalmology science | 36570621 | Ophthalmol Sci | 2022 Dec |
| Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database. | Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY | Ophthalmic plastic and reconstructive surgery | 36727790 | Ophthalmic Plast Reconstr Surg | 2023 May-Jun 01 |
| Evaluation and Optimization of Diabetic Retinopathy Screenings for Uninsured Latinx Patients in a Resource-Limited Student-Run Free Clinic. | Bu JJ, Delavar A, Dayao JK, Lieu A, Chuter BG, Chen K, Nishihara T, Meller L, Camp AS, Lee JE, Baxter SL | Journal of student-run clinics | 38287932 | J Stud Run Clin | 2024 Jan 18 |
| Microperimetry Findings in Pentosan Polysulfate Maculopathy. | Most J, Kalaw FGP, Walker E, Arias JD, Charng J, Baxter SL, Nudleman E, Ferreyra H, Freeman WR, Chen FK, Borooah S | Ophthalmology. Retina | 37619623 | Ophthalmol Retina | 2023 Nov |
| Trends and practices following the 2016 hydroxychloroquine screening guidelines. | Kalaw FGP, Arnett J, Baxter SL, Walker E, Pedersen B, Borooah S | Scientific reports | 37730825 | Sci Rep | 2023 Sep 20 |
| Gap Analysis of Glaucoma Examination Concept Representations within Standard Systemized Nomenclature of Medicine - Clinical Terms. | Hallaj S, Khawaja AP, Rodrigues IAS, Boland MV, Brown EN, Chen A, Stagg BC, Stein JD, Sun CQ, Mahe-Cook AL, Swaminathan SS, Wang SY, Xu BY, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39147325 | Ophthalmol Glaucoma | 2025 Jan-Feb |
| Social Factors Associated with the Risk of Glaucoma Suspect Conversion to Glaucoma: Analysis of the Nationwide All of Us Program. | Wu JH, Halfpenny W, Bu J, Brar M, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 38959998 | Ophthalmol Glaucoma | 2024 Nov-Dec |
| Variations in Using Diagnosis Codes for Defining Age-Related Macular Degeneration Cohorts. | Kalaw FGP, Chen JS, Baxter SL | Informatics (MDPI) | 40012991 | Informatics (MDPI) | 2024 Jun |
| Review of glaucoma medication adherence monitoring in the digital health era. | Erras A, Shahrvini B, Weinreb RN, Baxter SL | The British journal of ophthalmology | 33858837 | Br J Ophthalmol | 2023 Feb |
| Association of Electronic Health Record Inbasket Message Characteristics With Physician Burnout. | Baxter SL, Saseendrakumar BR, Cheung M, Savides TJ, Longhurst CA, Sinsky CA, Millen M, Tai-Seale M | JAMA network open | 36449288 | JAMA Netw Open | 2022 Nov 1 |
| Retinal tissue and microvasculature loss in COVID-19 infection. | Kalaw FGP, Warter A, Cavichini M, Knight D, Li A, Deussen D, Galang C, Heinke A, Mendoza V, Borooah S, Baxter SL, Bartsch DU, Cheng L, Freeman WR | Scientific reports | 36991025 | Sci Rep | 2023 Mar 29 |
| Assessing Usability of Smartwatch Digital Health Devices for Home Blood Pressure Monitoring among Glaucoma Patients. | Bhanvadia SB, Brar MS, Delavar A, Tavakoli K, Saseendrakumar BR, Weinreb RN, Zangwill LM, Baxter SL | Informatics (MDPI) | 36873830 | Informatics (MDPI) | 2022 Dec |
| Racial, Ethnic, and Socioeconomic Disparities in Glaucoma Onset and Severity in a Diverse Nationwide Cohort in the United States. | Acuff K, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Journal of glaucoma | 37523618 | J Glaucoma | 2023 Sep 1 |
| Associations Between Thyroid Eye Disease and Glaucoma Among Those Enrolled in the National Institutes of Health All of Us Research Program. | Delavar A, Radha Saseendrakumar B, Lee TC, Topilow NJ, Ting MA, Liu CY, Korn BS, Weinreb RN, Kikkawa DO, Baxter SL | Ophthalmic plastic and reconstructive surgery | 36394556 | Ophthalmic Plast Reconstr Surg | 2023 Jul-Aug 01 |
| Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. | Wu Y, Olvera-Barrios A, Yanagihara R, Kung TH, Lu R, Leung I, Mishra AV, Nussinovitch H, Grimaldi G, Blazes M, Lee CS, Egan C, Tufail A, Lee AY | Ophthalmology | 36154868 | Ophthalmology | 2023 Feb |
| Social Determinants of Health Data Availability for Patients with Eye Conditions. | Lee TC, Saseendrakumar BR, Nayak M, Chan AX, McDermott JJ 4th, Shahrvini B, Ye GY, Sitapati AM, Nebeker C, Baxter SL | Ophthalmology science | 35662804 | Ophthalmol Sci | 2022 Jun |
| Novel Association between Opioid Use and Increased Risk of Retinal Vein Occlusion Using the National Institutes of Health All of Us Research Program. | McDermott JJ 4th, Lee TC, Chan AX, Ye GY, Shahrvini B, Saseendrakumar BR, Ferreyra H, Nudleman E, Baxter SL | Ophthalmology science | 35721456 | Ophthalmol Sci | 2022 Mar |
| Associations between Socioeconomic Factors and Visit Adherence among Patients with Glaucoma in the All of Us Research Program. | Acuff K, Delavar A, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 36746242 | Ophthalmol Glaucoma | 2023 Jul-Aug |
| Availability of Physical Activity Tracking Data from Wearable Devices for Glaucoma Patients. | Bhanvadia SB, Meller L, Madjedi K, Weinreb RN, Baxter SL | Information (Basel) | 37771713 | Information (Basel) | 2023 Sep |
| Social and Health Care Utilization Factors Associated With Ophthalmic Visit Nonadherence in Glaucoma: An All of Us Study. | Wu JH, Varkhedi V, Radha Saseendrakumar B, Acuff K, Weinreb RN, Baxter SL | Journal of glaucoma | 37671531 | J Glaucoma | 2023 Dec 1 |
| Advancing Toward a Common Data Model in Ophthalmology: Gap Analysis of General Eye Examination Concepts to Standard Observational Medical Outcomes Partnership (OMOP) Concepts. | Cai CX, Halfpenny W, Boland MV, Lehmann HP, Hribar M, Goetz KE, Baxter SL | Ophthalmology science | 38025162 | Ophthalmol Sci | 2023 Dec |
| RETINAL STRUCTURAL CHANGES AFTER CESSATION OF PENTOSAN POLYSULFATE SODIUM. | Kalaw FGP, Most J, Kako RN, Sharma P, Arias JD, Chen JS, Lin AC, Walker E, Bartsch DG, Baxter SL, Ferreyra H, Freeman WR, Borooah S | Retina (Philadelphia, Pa.) | 39174300 | Retina | 2024 Nov 1 |
| Hepatopathology of flaviviruses. | Bailey AL, Diamond MS | Journal of hepatology | 35981935 | J Hepatol | 2022 Dec |
| Effect of Interferon Gamma on Ebola Virus Infection of Primary Kupffer Cells and a Kupffer Cell Line. | Aguilar-Briseño JA, Elliff JM, Patten JJ, Wilson LR, Davey RA, Bailey AL, Maury WJ | Viruses | 37896854 | Viruses | 2023 Oct 11 |
| Development of a hydrogen peroxide-inactivated vaccine that protects against viscerotropic yellow fever in a non-human primate model. | Amanna IJ, Thomas A, Engelmann F, Hammarlund E, Raué HP, Bailey AL, Poore EA, Quintel BK, Lewis AD, Axthelm MK, Johnson AL, Colgin LMA, Diamond MS, Messaoudi I, Slifka MK | Cell reports. Medicine | 39019010 | Cell Rep Med | 2024 Jul 16 |
| Interactions of Non-Nutritive Artificial Sweeteners with the Microbiome in Metabolic Syndrome. | Harrington V, Lau L, Crits-Christoph A, Suez J | Immunometabolism | 35528135 | Immunometabolism | 2022 |
| Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome. | Crits-Christoph A, Hallowell HA, Koutouvalis K, Suez J | Gut microbes | 35332832 | Gut Microbes | 2022 Jan-Dec |
| Clonal hematopoiesis associated with epigenetic aging and clinical outcomes. | Nachun D, Lu AT, Bick AG, Natarajan P, Weinstock J, Szeto MD, Kathiresan S, Abecasis G, Taylor KD, Guo X, Tracy R, Durda P, Liu Y, Johnson C, Rich SS, Van Den Berg D, Laurie C, Blackwell T, Papanicolaou GJ, Correa A, Raffield LM, Johnson AD, Murabito J, Manson JE, Desai P, Kooperberg C, Assimes TL, Levy D, Rotter JI, Reiner AP, Whitsel EA, Wilson JG, Horvath S, Jaiswal S, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium | Aging cell | 34050697 | Aging Cell | 2021 Jun |
| A practical approach to curate clonal hematopoiesis of indeterminate potential in human genetic data sets. | Vlasschaert C, Mack T, Heimlich JB, Niroula A, Uddin MM, Weinstock J, Sharber B, Silver AJ, Xu Y, Savona M, Gibson C, Lanktree MB, Rauh MJ, Ebert BL, Natarajan P, Jaiswal S, Bick AG | Blood | 36652671 | Blood | 2023 May 4 |
| Clonal hematopoiesis in sickle cell disease. | Liggett LA, Cato LD, Weinstock JS, Zhang Y, Nouraie SM, Gladwin MT, Garrett ME, Ashley-Koch A, Telen MJ, Custer B, Kelly S, Dinardo CL, Sabino EC, Loureiro P, Carneiro-Proietti AB, Maximo C, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Reiner AP, Abecasis GR, Williams DA, Natarajan P, Bick AG, Sankaran VG | The Journal of clinical investigation | 34990411 | J Clin Invest | 2022 Feb 15 |
| Somatic Mutations in Cardiovascular Disease. | Heimlich JB, Bick AG | Circulation research | 34995138 | Circ Res | 2022 Jan 7 |
| Mendelian randomization supports bidirectional causality between telomere length and clonal hematopoiesis of indeterminate potential. | Nakao T, Bick AG, Taub MA, Zekavat SM, Uddin MM, Niroula A, Carty CL, Lane J, Honigberg MC, Weinstock JS, Pampana A, Gibson CJ, Griffin GK, Clarke SL, Bhattacharya R, Assimes TL, Emery LS, Stilp AM, Wong Q, Broome J, Laurie CA, Khan AT, Smith AV, Blackwell TW, Codd V, Nelson CP, Yoneda ZT, Peralta JM, Bowden DW, Irvin MR, Boorgula M, Zhao W, Yanek LR, Wiggins KL, Hixson JE, Gu CC, Peloso GM, Roden DM, Reupena MS, Hwu CM, DeMeo DL, North KE, Kelly S, Musani SK, Bis JC, Lloyd-Jones DM, Johnsen JM, Preuss M, Tracy RP, Peyser PA, Qiao D, Desai P, Curran JE, Freedman BI, Tiwari HK, Chavan S, Smith JA, Smith NL, Kelly TN, Hidalgo B, Cupples LA, Weeks DE, Hawley NL, Minster RL, Samoan Obesity, Lifestyle and Genetic Adaptations Study (OLaGA) Group, Deka R, Naseri TT, de las Fuentes L, Raffield LM, Morrison AC, Vries PS, Ballantyne CM, Kenny EE, Rich SS, Whitsel EA, Cho MH, Shoemaker MB, Pace BS, Blangero J, Palmer ND, Mitchell BD, Shuldiner AR, Barnes KC, Redline S, Kardia SLR, Abecasis GR, Becker LC, Heckbert SR, He J, Post W, Arnett DK, Vasan RS, Darbar D, Weiss ST, McGarvey ST, de Andrade M, Chen YI, Kaplan RC, Meyers DA, Custer BS, Correa A, Psaty BM, Fornage M, Manson JE, Boerwinkle E, Konkle BA, Loos RJF, Rotter JI, Silverman EK, Kooperberg C, Danesh J, Samani NJ, Jaiswal S, Libby P, Ellinor PT, Pankratz N, Ebert BL, Reiner AP, Mathias RA, Do R, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Natarajan P | Science advances | 35385311 | Sci Adv | 2022 Apr 8 |
| Clonal hematopoiesis of indeterminate potential, DNA methylation, and risk for coronary artery disease. | Uddin MDM, Nguyen NQH, Yu B, Brody JA, Pampana A, Nakao T, Fornage M, Bressler J, Sotoodehnia N, Weinstock JS, Honigberg MC, Nachun D, Bhattacharya R, Griffin GK, Chander V, Gibbs RA, Rotter JI, Liu C, Baccarelli AA, Chasman DI, Whitsel EA, Kiel DP, Murabito JM, Boerwinkle E, Ebert BL, Jaiswal S, Floyd JS, Bick AG, Ballantyne CM, Psaty BM, Natarajan P, Conneely KN | Nature communications | 36097025 | Nat Commun | 2022 Sep 12 |
| VEXAS-Defining UBA1 Somatic Variants in 245,368 Diverse Individuals in the NIH All Of Us Cohort. | Corty RW, Brogan J, Byram K, Springer J, Grayson PC, Bick AG | Arthritis & rheumatology (Hoboken, N.J.) | 38225170 | Arthritis Rheumatol | 2024 Jun |
| Age at Menopause, Leukocyte Telomere Length, and Coronary Artery Disease in Postmenopausal Women. | Schuermans A, Nakao T, Uddin MM, Hornsby W, Ganesh S, Shadyab AH, Liu S, Haring B, Shufelt CL, Taub MA, Mathias RA, Kooperberg C, Reiner AP, Bick AG, Manson JE, Natarajan P, Honigberg MC | Circulation research | 37489536 | Circ Res | 2023 Aug 18 |
| TP53-mediated clonal hematopoiesis confers increased risk for incident atherosclerotic disease. | Zekavat SM, Viana-Huete V, Matesanz N, Jorshery SD, Zuriaga MA, Uddin MM, Trinder M, Paruchuri K, Zorita V, Ferrer-Pérez A, Amorós-Pérez M, Kunderfranco P, Carriero R, Greco CM, Aroca-Crevillen A, Hidalgo A, Damrauer SM, Ballantyne CM, Niroula A, Gibson CJ, Pirruccello J, Griffin G, Ebert BL, Libby P, Fuster V, Zhao H, Ghassemi M, Natarajan P, Bick AG, Fuster JJ, Klarin D | Nature cardiovascular research | 36949957 | Nat Cardiovasc Res | 2023 Jan 16 |
| Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood. | Schuermans A, Nakao T, Ruan Y, Koyama S, Yu Z, Uddin MM, Haidermota S, Hornsby W, Lewandowski AJ, Bick AG, Niroula A, Jaiswal S, Ebert BL, Natarajan P, Honigberg MC | Journal of the American Heart Association | 37345823 | J Am Heart Assoc | 2023 Jul 4 |
| Clonal hematopoiesis is associated with protection from Alzheimer's disease. | Bouzid H, Belk JA, Jan M, Qi Y, Sarnowski C, Wirth S, Ma L, Chrostek MR, Ahmad H, Nachun D, Yao W, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Beiser A, Bick AG, Bis JC, Fornage M, Longstreth WT Jr, Lopez OL, Natarajan P, Psaty BM, Satizabal CL, Weinstock J, Larson EB, Crane PK, Keene CD, Seshadri S, Satpathy AT, Montine TJ, Jaiswal S | Nature medicine | 37322115 | Nat Med | 2023 Jul |
| Multiomic profiling of human clonal hematopoiesis reveals genotype and cell-specific inflammatory pathway activation. | Heimlich JB, Bhat P, Parker AC, Jenkins MT, Vlasschaert C, Ulloa J, Van Amburg JC, Potts CR, Olson S, Silver AJ, Ahmad A, Sharber B, Brown D, Hu N, van Galen P, Savona MR, Bick AG, Ferrell PB | Blood advances | 38507736 | Blood Adv | 2024 Jul 23 |
| Variance quantitative trait loci reveal gene-gene interactions which alter blood traits. | Pershad Y, Poisner H, Corty RW, Hellwege JN, Bick AG | medRxiv : the preprint server for health sciences | 39371150 | medRxiv | 2024 Sep 19 |
| Human Plasma Proteomic Profile of Clonal Hematopoiesis. | Yu Z, Vromman A, Nguyen NQH, Schuermans A, Rentz T, Vellarikkal SK, Uddin MM, Niroula A, Griffin G, Honigberg MC, Lin AE, Gibson CJ, Katz DH, Tahir U, Fang S, Haidermota S, Ganesh S, Antoine T, Weinstock J, Austin TR, Ramachandran VS, Peloso GM, Hornsby W, Ganz P, Manson JE, Haring B, Kooperberg CL, Reiner AP, Bis JC, Psaty BM, Min YI, Correa A, Lange LA, Post WS, Rotter JI, Rich SS, Wilson JG, Ebert BL, Yu B, Ballantyne CM, Coresh J, Sankaran VG, Bick AG, Jaiswal S, Gerszten RE, NHLBI Trans-Omics for Precision Medicine, Libby P, Gupta RM, Natarajan P | bioRxiv : the preprint server for biology | 39554199 | bioRxiv | 2024 Oct 31 |
| Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells. | Bao EL, Nandakumar SK, Liao X, Bick AG, Karjalainen J, Tabaka M, Gan OI, Havulinna AS, Kiiskinen TTJ, Lareau CA, de Lapuente Portilla AL, Li B, Emdin C, Codd V, Nelson CP, Walker CJ, Churchhouse C, de la Chapelle A, Klein DE, Nilsson B, Wilson PWF, Cho K, Pyarajan S, Gaziano JM, Samani NJ, FinnGen, 23andMe Research Team, Regev A, Palotie A, Neale BM, Dick JE, Natarajan P, O'Donnell CJ, Daly MJ, Milyavsky M, Kathiresan S, Sankaran VG | Nature | 33057200 | Nature | 2020 Oct |
| Premature Menopause, Clonal Hematopoiesis, and Coronary Artery Disease in Postmenopausal Women. | Honigberg MC, Zekavat SM, Niroula A, Griffin GK, Bick AG, Pirruccello JP, Nakao T, Whitsel EA, Farland LV, Laurie C, Kooperberg C, Manson JE, Gabriel S, Libby P, Reiner AP, Ebert BL, NHLBI Trans-Omics for Precision Medicine Program, Natarajan P | Circulation | 33161765 | Circulation | 2021 Feb 2 |
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| Genetic Interleukin-6 Receptor Variant Is Not Associated With Rejection and Mortality After Heart Transplantation. | Amancherla K, Schlendorf KH, Vlasschaert C, Lowery BD, Wells QS, See SB, Zorn E, Colombo PC, Reilly MP, Lindenfeld J, Uriel N, Shah RV, Freedman JE, Moslehi J, Bick AG, Clerkin K | Journal of cardiac failure | 38367904 | J Card Fail | 2024 Jun |
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| Clonal Hematopoiesis of Indeterminate Potential and Kidney Function Decline in the General Population. | Kestenbaum B, Bick AG, Vlasschaert C, Rauh MJ, Lanktree MB, Franceschini N, Shoemaker MB, Harris RC Jr, Psaty BM, Köttgen A, Natarajan P, Robinson-Cohen C | American journal of kidney diseases : the official journal of the National Kidney Foundation | 36241009 | Am J Kidney Dis | 2023 Mar |
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| Increased CHIP Prevalence Amongst People Living with HIV. | Bick AG, Popadin K, Thorball CW, Uddin MM, Zanni M, Yu B, Cavassini M, Rauch A, Tarr P, Schmid P, Bernasconi E, Günthard HF, Libby P, Boerwinkle E, McLaren PJ, Ballantyne CM, Grinspoon S, Natarajan P, Fellay J | medRxiv : the preprint server for health sciences | 33173934 | medRxiv | 2020 Nov 7 |
| Association of Diet Quality With Prevalence of Clonal Hematopoiesis and Adverse Cardiovascular Events. | Bhattacharya R, Zekavat SM, Uddin MM, Pirruccello J, Niroula A, Gibson C, Griffin GK, Libby P, Ebert BL, Bick A, Natarajan P | JAMA cardiology | 34106216 | JAMA Cardiol | 2021 Sep 1 |
| Clonal Hematopoiesis Is Associated With Higher Risk of Stroke. | Bhattacharya R, Zekavat SM, Haessler J, Fornage M, Raffield L, Uddin MM, Bick AG, Niroula A, Yu B, Gibson C, Griffin G, Morrison AC, Psaty BM, Longstreth WT, Bis JC, Rich SS, Rotter JI, Tracy RP, Correa A, Seshadri S, Johnson A, Collins JM, Hayden KM, Madsen TE, Ballantyne CM, Jaiswal S, Ebert BL, Kooperberg C, Manson JE, Whitsel EA, NHLBI Trans-Omics for Precision Medicine Program, Natarajan P, Reiner AP | Stroke | 34743536 | Stroke | 2022 Mar |
| Association of Clonal Hematopoiesis of Indeterminate Potential with Incident Heart Failure with Preserved Ejection Fraction. | Reiner AP, Roberts MB, Honigberg MC, Kooperberg C, Desai P, Bick AG, Natarajan P, Manson JE, Whitsel EA, Eaton CB | medRxiv : the preprint server for health sciences | 37333361 | medRxiv | 2023 Jun 10 |
| Clonal Somatic Mutations in Chronic Lung Diseases Are Associated with Reduced Lung Function. | Yun JH, Khan MAW, Ghosh A, Hobbs BD, Castaldi PJ, Hersh CP, Miller PG, Cool CD, Sciurba F, Barwick L, Limper AH, Flaherty K, Criner GJ, Brown K, Wise R, Martinez F, Silverman EK, DeMeo D, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Cho MH, Bick AG | American journal of respiratory and critical care medicine | 37788444 | Am J Respir Crit Care Med | 2023 Dec 1 |
| Interleukin-6 Receptor Polymorphism Attenuates Clonal Hematopoiesis-Mediated Coronary Artery Disease Risk Among 451 180 Individuals in the UK Biobank. | Vlasschaert C, Heimlich JB, Rauh MJ, Natarajan P, Bick AG | Circulation | 36689568 | Circulation | 2023 Jan 24 |
| The genetic determinants of recurrent somatic mutations in 43,693 blood genomes. | Weinstock JS, Laurie CA, Broome JG, Taylor KD, Guo X, Shuldiner AR, O'Connell JR, Lewis JP, Boerwinkle E, Barnes KC, Chami N, Kenny EE, Loos RJF, Fornage M, Redline S, Cade BE, Gilliland FD, Chen Z, Gauderman WJ, Kumar R, Grammer L, Schleimer RP, Psaty BM, Bis JC, Brody JA, Silverman EK, Yun JH, Qiao D, Weiss ST, Lasky-Su J, DeMeo DL, Palmer ND, Freedman BI, Bowden DW, Cho MH, Vasan RS, Johnson AD, Yanek LR, Becker LC, Kardia S, He J, Kaplan R, Heckbert SR, Smith NL, Wiggins KL, Arnett DK, Irvin MR, Tiwari H, Correa A, Raffield LM, Gao Y, de Andrade M, Rotter JI, Rich SS, Manichaikul AW, Konkle BA, Johnsen JM, Wheeler MM, Custer BS, Duggirala R, Curran JE, Blangero J, Gui H, Xiao S, Williams LK, Meyers DA, Li X, Ortega V, McGarvey S, Gu CC, Chen YI, Lee WJ, Shoemaker MB, Darbar D, Roden D, Albert C, Kooperberg C, Desai P, Blackwell TW, Abecasis GR, Smith AV, Kang HM, Mathias R, Natarajan P, Jaiswal S, Reiner AP, Bick AG, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium | Science advances | 37126548 | Sci Adv | 2023 Apr 28 |
| Clonal hematopoiesis of indeterminate potential and outcomes after heart transplantation: A multicenter study. | Amancherla K, Schlendorf KH, Vlasschaert C, Lowery BD, Wells QS, See SB, Zorn E, Colombo PC, Reilly MP, Lindenfeld J, Uriel N, Freedman JE, Shah RV, Moslehi J, Bick AG, Clerkin K | American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons | 37156299 | Am J Transplant | 2023 Aug |
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| Cost-Effective and Scalable Clonal Hematopoiesis Assay Provides Insight into Clonal Dynamics. | Mack T, Vlasschaert C, von Beck K, Silver AJ, Heimlich JB, Poisner H, Condon HR, Ulloa J, Sochacki AL, Spaulding TP, Kishtagari A, Bejan CA, Xu Y, Savona MR, Jones A, Bick AG | The Journal of molecular diagnostics : JMD | 38588769 | J Mol Diagn | 2024 Jul |
| JAK2-mutant clonal hematopoiesis is associated with venous thromboembolism. | Zon RL, Sekar A, Clapham K, Oren O, Niroula A, Bick AG, Gibson CJ, Griffin G, Uddin MM, Neuberg D, Natarajan P, Ebert BL | Blood | 39102652 | Blood | 2024 Nov 14 |
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| Hematopoietic mosaic chromosomal alterations increase the risk for diverse types of infection. | Zekavat SM, Lin SH, Bick AG, Liu A, Paruchuri K, Wang C, Uddin MM, Ye Y, Yu Z, Liu X, Kamatani Y, Bhattacharya R, Pirruccello JP, Pampana A, Loh PR, Kohli P, McCarroll SA, Kiryluk K, Neale B, Ionita-Laza I, Engels EA, Brown DW, Smoller JW, Green R, Karlson EW, Lebo M, Ellinor PT, Weiss ST, Daly MJ, Biobank Japan Project, FinnGen Consortium, Terao C, Zhao H, Ebert BL, Reilly MP, Ganna A, Machiela MJ, Genovese G, Natarajan P | Nature medicine | 34099924 | Nat Med | 2021 Jun |
| Healthy Lifestyle and Clonal Hematopoiesis of Indeterminate Potential: Results From the Women's Health Initiative. | Haring B, Reiner AP, Liu J, Tobias DK, Whitsel E, Berger JS, Desai P, Wassertheil-Smoller S, LaMonte MJ, Hayden KM, Bick AG, Natarajan P, Weinstock JS, Nguyen PK, Stefanick M, Simon MS, Eaton CB, Kooperberg C, Manson JE | Journal of the American Heart Association | 33619969 | J Am Heart Assoc | 2021 Feb |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJ, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun J, DeMeo D, Levy D, Johnson A, Mathias R, Taub M, Arnett D, North K, Raffield LM, Carson A, Doyle MF, Rich SS, Rotter JI, Guo X, Cox N, Roden DM, Franceschini N, Desai P, Reiner A, Auer PL, Scheet P, Jaiswal S, Weinstock JS, Bick AG | medRxiv : the preprint server for health sciences | 37905118 | medRxiv | 2023 Oct 21 |
| Aberrant activation of TCL1A promotes stem cell expansion in clonal haematopoiesis. | Weinstock JS, Gopakumar J, Burugula BB, Uddin MM, Jahn N, Belk JA, Bouzid H, Daniel B, Miao Z, Ly N, Mack TM, Luna SE, Prothro KP, Mitchell SR, Laurie CA, Broome JG, Taylor KD, Guo X, Sinner MF, von Falkenhausen AS, Kääb S, Shuldiner AR, O'Connell JR, Lewis JP, Boerwinkle E, Barnes KC, Chami N, Kenny EE, Loos RJF, Fornage M, Hou L, Lloyd-Jones DM, Redline S, Cade BE, Psaty BM, Bis JC, Brody JA, Silverman EK, Yun JH, Qiao D, Palmer ND, Freedman BI, Bowden DW, Cho MH, DeMeo DL, Vasan RS, Yanek LR, Becker LC, Kardia SLR, Peyser PA, He J, Rienstra M, Van der Harst P, Kaplan R, Heckbert SR, Smith NL, Wiggins KL, Arnett DK, Irvin MR, Tiwari H, Cutler MJ, Knight S, Muhlestein JB, Correa A, Raffield LM, Gao Y, de Andrade M, Rotter JI, Rich SS, Tracy RP, Konkle BA, Johnsen JM, Wheeler MM, Smith JG, Melander O, Nilsson PM, Custer BS, Duggirala R, Curran JE, Blangero J, McGarvey S, Williams LK, Xiao S, Yang M, Gu CC, Chen YI, Lee WJ, Marcus GM, Kane JP, Pullinger CR, Shoemaker MB, Darbar D, Roden DM, Albert C, Kooperberg C, Zhou Y, Manson JE, Desai P, Johnson AD, Mathias RA, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Blackwell TW, Abecasis GR, Smith AV, Kang HM, Satpathy AT, Natarajan P, Kitzman JO, Whitsel EA, Reiner AP, Bick AG, Jaiswal S | Nature | 37046083 | Nature | 2023 Apr |
| Increased Risk of Thoracic Aortic Aneurysms With JAK2 V617F. | Nakao T, Yu Z, Vlasschaert C, Uddin MM, Lindsay ME, Ellinor PT, Ebert BL, Bick AG, Pirruccello JP, Natarajan P | Journal of the American College of Cardiology | 37225367 | J Am Coll Cardiol | 2023 May 30 |
| Genetic modification of inflammation- and clonal hematopoiesis-associated cardiovascular risk. | Yu Z, Fidler TP, Ruan Y, Vlasschaert C, Nakao T, Uddin MM, Mack T, Niroula A, Heimlich JB, Zekavat SM, Gibson CJ, Griffin GK, Wang Y, Peloso GM, Heard-Costa N, Levy D, Vasan RS, Aguet F, Ardlie KG, Taylor KD, Rich SS, Rotter JI, Libby P, Jaiswal S, Ebert BL, Bick AG, Tall AR, Natarajan P | The Journal of clinical investigation | 37498674 | J Clin Invest | 2023 Sep 15 |
| Clonal Hematopoiesis of Indeterminate Potential Predicts Adverse Outcomes in Patients With Atherosclerotic Cardiovascular Disease. | Gumuser ED, Schuermans A, Cho SMJ, Sporn ZA, Uddin MM, Paruchuri K, Nakao T, Yu Z, Haidermota S, Hornsby W, Weeks LD, Niroula A, Jaiswal S, Libby P, Ebert BL, Bick AG, Natarajan P, Honigberg MC | Journal of the American College of Cardiology | 37197843 | J Am Coll Cardiol | 2023 May 23 |
| Clonal hematopoiesis and vascular disease. | Amancherla K, Wells JA 4th, Bick AG | Seminars in immunopathology | 35122117 | Semin Immunopathol | 2022 May |
| Proteomic profiling platforms head to head: Leveraging genetics and clinical traits to compare aptamer- and antibody-based methods. | Katz DH, Robbins JM, Deng S, Tahir UA, Bick AG, Pampana A, Yu Z, Ngo D, Benson MD, Chen ZZ, Cruz DE, Shen D, Gao Y, Bouchard C, Sarzynski MA, Correa A, Natarajan P, Wilson JG, Gerszten RE | Science advances | 35984888 | Sci Adv | 2022 Aug 19 |
| Demonstrating paths for unlocking the value of cloud genomics through cross cohort analysis. | Deflaux N, Selvaraj MS, Condon HR, Mayo K, Haidermota S, Basford MA, Lunt C, Philippakis AA, Roden DM, Denny JC, Musick A, Collins R, Allen N, Effingham M, Glazer D, Natarajan P, Bick AG | Nature communications | 37669985 | Nat Commun | 2023 Sep 5 |
| Driver mutation zygosity is a critical factor in predicting clonal hematopoiesis transformation risk. | Kishtagari A, Khan MAW, Li Y, Vlasschaert C, Marneni N, Silver AJ, von Beck K, Spaulding T, Stockton S, Snider C, Sochacki A, Dorand D, Mack TM, Ferrell PB Jr, Xu Y, Bejan CA, Savona MR, Bick AG | Blood cancer journal | 38225345 | Blood Cancer J | 2024 Jan 15 |
| Clonal Hematopoiesis Risk Score and All-Cause and Cardiovascular Mortality in Older Adults. | Saadatagah S, Uddin MM, Weeks LD, Niroula A, Ru M, Takahashi K, Gondek L, Yu B, Bick AG, Ebert BL, Platz EA, Natarajan P, Ballantyne CM | JAMA network open | 38231513 | JAMA Netw Open | 2024 Jan 2 |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJF, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun JH, DeMeo D, Levy D, Johnson AD, Mathias RA, Taub MA, Arnett D, North KE, Raffield LM, Carson AP, Doyle MF, Rich SS, Rotter JI, Guo X, Cox NJ, Roden DM, Franceschini N, Desai P, Reiner AP, Auer PL, Scheet PA, Jaiswal S, Weinstock JS, Bick AG | Nature communications | 38714703 | Nat Commun | 2024 May 7 |
| Epigenetic and proteomic signatures associate with clonal hematopoiesis expansion rate. | Mack TM, Raddatz MA, Pershad Y, Nachun DC, Taylor KD, Guo X, Shuldiner AR, O'Connell JR, Kenny EE, Loos RJF, Redline S, Cade BE, Psaty BM, Bis JC, Brody JA, Silverman EK, Yun JH, Cho MH, DeMeo DL, Levy D, Johnson AD, Mathias RA, Yanek LR, Heckbert SR, Smith NL, Wiggins KL, Raffield LM, Carson AP, Rotter JI, Rich SS, Manichaikul AW, Gu CC, Chen YI, Lee WJ, Shoemaker MB, Roden DM, Kooperberg C, Auer PL, Desai P, Blackwell TW, Smith AV, Reiner AP, Jaiswal S, Weinstock JS, Bick AG | Nature aging | 38834882 | Nat Aging | 2024 Aug |
| Long-term longitudinal analysis of 4,187 participants reveals insights into determinants of clonal hematopoiesis. | Uddin MM, Saadatagah S, Niroula A, Yu B, Hornsby WE, Ganesh S, Lannery K, Schuermans A, Honigberg MC, Bick AG, Libby P, Ebert BL, Ballantyne CM, Natarajan P | Nature communications | 39251642 | Nat Commun | 2024 Sep 9 |
| Salt and CHIP: Tet2-CH Aggravates Salt-Sensitive Hypertension in Mice. | Vlasschaert C, Crowley SD, Bick AG | Circulation research | 39388535 | Circ Res | 2024 Oct 11 |
| Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing. | Smajlović H, Shajii A, Berger B, Cho H, Numanagić I | Genome biology | 36631897 | Genome Biol | 2023 Jan 11 |
| Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption. | Froelicher D, Troncoso-Pastoriza JR, Raisaro JL, Cuendet MA, Sousa JS, Cho H, Berger B, Fellay J, Hubaux JP | Nature communications | 34635645 | Nat Commun | 2021 Oct 11 |
| Mechanisms for Hiding Sensitive Genotypes with Information-Theoretic Privacy. | Ye F, Cho H, Rouayheb SE | IEEE transactions on information theory | 37283781 | IEEE Trans Inf Theory | 2022 Jun |
| Privacy-Enhancing Technologies in Biomedical Data Science. | Cho H, Froelicher D, Dokmai N, Nandi A, Sadhuka S, Hong MM, Berger B | Annual review of biomedical data science | 39178425 | Annu Rev Biomed Data Sci | 2024 Aug |
| Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 39027313 | Res Comput Mol Biol | 2024 Apr-May |
| Reconstruction of private genomes through reference-based genotype imputation. | Mosca MJ, Cho H | Genome biology | 38053191 | Genome Biol | 2023 Dec 6 |
| Assessing transcriptomic reidentification risks using discriminative sequence models. | Sadhuka S, Fridman D, Berger B, Cho H | Genome research | 37541758 | Genome Res | 2023 Jul |
| Privacy-Preserving Genotype Imputation in a Trusted Execution Environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 34859247 | Res Comput Mol Biol | 2021 Oct 20 |
| Privacy-preserving genotype imputation in a trusted execution environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Cell systems | 34450045 | Cell Syst | 2021 Oct 20 |
| sfkit: a web-based toolkit for secure and federated genomic analysis. | Mendelsohn S, Froelicher D, Loginov D, Bernick D, Berger B, Cho H | Nucleic acids research | 37246709 | Nucleic Acids Res | 2023 Jul 5 |
| k-SALSA: k-anonymous synthetic averaging of retinal images via local style alignment. | Jeon M, Park H, Kim HJ, Morley M, Cho H | Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision | 37525827 | Comput Vis ECCV | 2022 Oct |
| Secure discovery of genetic relatives across large-scale and distributed genomic data sets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Genome research | 39111815 | Genome Res | 2024 Oct 11 |
| Scalable and Privacy-Preserving Federated Principal Component Analysis. | Froelicher D, Cho H, Edupalli M, Sousa JS, Bossuat JP, Pyrgelis A, Troncoso-Pastoriza JR, Berger B, Hubaux JP | Proceedings. IEEE Symposium on Security and Privacy | 38665901 | Proc IEEE Symp Secur Priv | 2023 May |
| A Multi-User Transradial Functional-Test Socket for Validation of New Myoelectric Prosthetic Control Strategies. | Hansen TC, Citterman AR, Stone ES, Tully TN, Baschuk CM, Duncan CC, George JA | Frontiers in neurorobotics | 35783364 | Front Neurorobot | 2022 |
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| A Bionic Hand for Semi-Autonomous Fragile Object Manipulation via Proximity and Pressure Sensors. | Hansen TC, Trout MA, Segil JL, Warren DJ, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892591 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov |
| A portable, programmable, multichannel stimulator with high compliance voltage for noninvasive neural stimulation of motor and sensory nerves in humans. | Trout MA, Harrison AT, Brinton MR, George JA | Scientific reports | 36859464 | Sci Rep | 2023 Mar 1 |
| Enhancing neuroprosthesis calibration: the advantage of integrating prior training over exclusive use of new data. | Thomson CJ, Tully TN, Stone ES, Morrell CB, Scheme EJ, Warren DJ, Hutchinson DT, Clark GA, George JA | Journal of neural engineering | 39569866 | J Neural Eng | 2024 Nov 29 |
| Validity and Impact of Methods for Collecting Training Data for Myoelectric Prosthetic Control Algorithms. | Tully TN, Thomson CJ, Clark GA, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 38739519 | IEEE Trans Neural Syst Rehabil Eng | 2024 |
| Peptidomimetic Oligomers Targeting Membrane Phosphatidylserine Exhibit Broad Antiviral Activity. | Tate PM, Mastrodomenico V, Cunha C, McClure J, Barron AE, Diamond G, Mounce BC, Kirshenbaum K | ACS infectious diseases | 37530426 | ACS Infect Dis | 2023 Aug 11 |
| A Recurrent Neural Network Provides Stable Across-Day Prosthetic Control for a Human Amputee with Implanted Intramuscular Electromyographic Recording Leads. | Thomson CJ, Clark GA, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892525 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov |
| Electromyographically controlled prosthetic wrist improves dexterity and reduces compensatory movements without added cognitive load. | Olsen CD, Olsen NR, Stone ES, Tully TN, Paskett MD, Teramoto M, Clark GA, George JA | Scientific reports | 39370497 | Sci Rep | 2024 Oct 6 |
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| Integrating mutational and nonmutational mechanisms of acquired therapy resistance within the Darwinian paradigm. | Vander Velde R, Shaffer S, Marusyk A | Trends in cancer | 35307314 | Trends Cancer | 2022 Jun |
| Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages. | Acheampong KK, Schaff DL, Emert BL, Lake J, Reffsin S, Shea EK, Comar CE, Litzky LA, Khurram NA, Linn RL, Feldman M, Weiss SR, Montone KT, Cherry S, Shaffer SM | mBio | 35130722 | mBio | 2021 Feb 22 |
| Advancements in APOE and dementia research: Highlights from the 2023 AAIC Advancements: APOE conference. | Kloske CM, Belloy ME, Blue EE, Bowman GR, Carrillo MC, Chen X, Chiba-Falek O, Davis AA, Paolo GD, Garretti F, Gate D, Golden LR, Heinecke JW, Herz J, Huang Y, Iadecola C, Johnson LA, Kanekiyo T, Karch CM, Khvorova A, Koppes-den Hertog SJ, Lamb BT, Lawler PE, Guen YL, Litvinchuk A, Liu CC, Mahinrad S, Marcora E, Marino C, Michaelson DM, Miller JJ, Morganti JM, Narayan PS, Naslavsky MS, Oosthoek M, Ramachandran KV, Ramakrishnan A, Raulin AC, Robert A, Saleh RNM, Sexton C, Shah N, Shue F, Sible IJ, Soranno A, Strickland MR, Tcw J, Thierry M, Tsai LH, Tuckey RA, Ulrich JD, van der Kant R, Wang N, Wellington CL, Weninger SC, Yassine HN, Zhao N, Bu G, Goate AM, Holtzman DM | Alzheimer's & dementia : the journal of the Alzheimer's Association | 39031528 | Alzheimers Dement | 2024 Sep |
| Regulation of synapse density by Pumilio RNA-binding proteins. | Randolph LK, Pauers MM, Martínez JC, Sibener LJ, Zrzavy MA, Sharif NA, Gonzalez TM, Ramachandran KV, Dominguez D, Hengst U | Cell reports | 39298318 | Cell Rep | 2024 Oct 22 |
| A coagulation defect arising from heterozygous premature termination of tissue factor. | Schulman S, El-Darzi E, Florido MH, Friesen M, Merrill-Skoloff G, Brake MA, Schuster CR, Lin L, Westrick RJ, Cowan CA, Flaumenhaft R, NIHR BioResource, Ouwehand WH, Peerlinck K, Freson K, Turro E, Furie B | The Journal of clinical investigation | 32663190 | J Clin Invest | 2020 Oct 1 |
| Associations of thrombocytopenia, transaminase elevations, and transfusion with laboratory coagulation tests in women with preeclampsia: a cross-sectional study. | Combs DJ, Gray KJ, Schulman S, Bateman BT | International journal of obstetric anesthesia | 33798794 | Int J Obstet Anesth | 2021 May |
| Human Genetic Variation in F3 and Its Impact on Tissue Factor-Dependent Disease. | Park JK, Brake MA, Schulman S | Seminars in thrombosis and hemostasis | 37201535 | Semin Thromb Hemost | 2024 Mar |
| TMEM16E regulates endothelial cell procoagulant activity and thrombosis. | Schmaier AA, Anderson PF, Chen SM, El-Darzi E, Aivasovsky I, Kaushik MP, Sack KD, Hartzell HC, Parikh SM, Flaumenhaft R, Schulman S | The Journal of clinical investigation | 36951953 | J Clin Invest | 2023 Jun 1 |
| The unfolded protein response links ER stress to cancer-associated thrombosis. | Muse O, Patell R, Peters CG, Yang M, El-Darzi E, Schulman S, Falanga A, Marchetti M, Russo L, Zwicker JI, Flaumenhaft R | JCI insight | 37651191 | JCI Insight | 2023 Aug 31 |
| How the tissue factor-VIIa complex keeps two substrates in the loop. | Schulman S | Journal of thrombosis and haemostasis : JTH | 33405385 | J Thromb Haemost | 2021 Jan |
| A systematic review and meta-analysis of obesity and COVID-19 outcomes. | Zhang X, Lewis AM, Moley JR, Brestoff JR | Scientific reports | 33785830 | Sci Rep | 2021 Mar 30 |
| Technological features of blast identification in the cerebrospinal fluid: A systematic review of flow cytometry and laboratory haematology methods. | Frater JL, Shirai CL, Brestoff JR | International journal of laboratory hematology | 35785436 | Int J Lab Hematol | 2022 Sep |
| Ejection of damaged mitochondria and their removal by macrophages ensure efficient thermogenesis in brown adipose tissue. | Rosina M, Ceci V, Turchi R, Chuan L, Borcherding N, Sciarretta F, Sánchez-Díaz M, Tortolici F, Karlinsey K, Chiurchiù V, Fuoco C, Giwa R, Field RL, Audano M, Arena S, Palma A, Riccio F, Shamsi F, Renzone G, Verri M, Crescenzi A, Rizza S, Faienza F, Filomeni G, Kooijman S, Rufini S, de Vries AAF, Scaloni A, Mitro N, Tseng YH, Hidalgo A, Zhou B, Brestoff JR, Aquilano K, Lettieri-Barbato D | Cell metabolism | 35305295 | Cell Metab | 2022 Apr 5 |
| The power and potential of mitochondria transfer. | Borcherding N, Brestoff JR | Nature | 37938702 | Nature | 2023 Nov |
| Induction of a torpor-like hypothermic and hypometabolic state in rodents by ultrasound. | Yang Y, Yuan J, Field RL, Ye D, Hu Z, Xu K, Xu L, Gong Y, Yue Y, Kravitz AV, Bruchas MR, Cui J, Brestoff JR, Chen H | Nature metabolism | 37231250 | Nat Metab | 2023 May |
| Adipocyte lipin 1 expression associates with human metabolic health and regulates systemic metabolism in mice. | LaPoint A, Singer JM, Ferguson D, Shew TM, Renkemeyer MK, Palacios HH, Field RL, Yerrathota S, Kumari R, Shankaran M, Smith GI, Yoshino J, He M, Patti GJ, Hellerstein MK, Klein S, Brestoff JR, Morris EM, Finck BN, Lutkewitte AJ | The Journal of clinical investigation | 39405118 | J Clin Invest | 2024 Oct 15 |
| Myeloid-specific Asxl2 deletion limits diet-induced obesity by regulating energy expenditure. | Zou W, Rohatgi N, Brestoff JR, Moley JR, Li Y, Williams JW, Alippe Y, Pan H, Pietka TA, Mbalaviele G, Newberry EP, Davidson NO, Dey A, Shoghi KI, Head RD, Wickline SA, Randolph GJ, Abumrad NA, Teitelbaum SL | The Journal of clinical investigation | 32310225 | J Clin Invest | 2020 May 1 |
| Ablation of Fat Cells in Adult Mice Induces Massive Bone Gain. | Zou W, Rohatgi N, Brestoff JR, Li Y, Barve RA, Tycksen E, Kim Y, Silva MJ, Teitelbaum SL | Cell metabolism | 33027637 | Cell Metab | 2020 Nov 3 |
| Hepatic lipids promote liver metastasis. | Li Y, Su X, Rohatgi N, Zhang Y, Brestoff JR, Shoghi KI, Xu Y, Semenkovich CF, Harris CA, Peterson LL, Weilbaecher KN, Teitelbaum SL, Zou W | JCI insight | 32879136 | JCI Insight | 2020 Sep 3 |
| A type 2 immune circuit in the stomach controls mammalian adaptation to dietary chitin. | Kim DH, Wang Y, Jung H, Field RL, Zhang X, Liu TC, Ma C, Fraser JS, Brestoff JR, Van Dyken SJ | Science (New York, N.Y.) | 37676935 | Science | 2023 Sep 8 |
| Full spectrum flow cytometry in the clinical laboratory. | Brestoff JR | International journal of laboratory hematology | 37211417 | Int J Lab Hematol | 2023 Jun |
| Intercellular Mitochondria Transfer to Macrophages Regulates White Adipose Tissue Homeostasis and Is Impaired in Obesity. | Brestoff JR, Wilen CB, Moley JR, Li Y, Zou W, Malvin NP, Rowen MN, Saunders BT, Ma H, Mack MR, Hykes BL Jr, Balce DR, Orvedahl A, Williams JW, Rohatgi N, Wang X, McAllaster MR, Handley SA, Kim BS, Doench JG, Zinselmeyer BH, Diamond MS, Virgin HW, Gelman AE, Teitelbaum SL | Cell metabolism | 33278339 | Cell Metab | 2021 Feb 2 |
| Blood natural killer cell deficiency reveals an immunotherapy strategy for atopic dermatitis. | Mack MR, Brestoff JR, Berrien-Elliott MM, Trier AM, Yang TB, McCullen M, Collins PL, Niu H, Bodet ND, Wagner JA, Park E, Xu AZ, Wang F, Chibnall R, Council ML, Heffington C, Kreisel F, Margolis DJ, Sheinbein D, Lovato P, Vivier E, Cella M, Colonna M, Yokoyama WM, Oltz EM, Fehniger TA, Kim BS | Science translational medicine | 32102931 | Sci Transl Med | 2020 Feb 26 |
| Using information theory to optimize a diagnostic threshold to match physician-ordering practice. | Zaydman MA, Brestoff JR, Jackups R Jr | Journal of biomedical informatics | 33766781 | J Biomed Inform | 2021 May |
| Coronavirus Disease 2019 Severity in Obese Patients May Be Linked to Viral Load and Immune Response. | Lewis AM, Zhang X, Brestoff JR | The Journal of infectious diseases | 34331761 | J Infect Dis | 2021 Nov 16 |
| Dietary lipids inhibit mitochondria transfer to macrophages to divert adipocyte-derived mitochondria into the blood. | Borcherding N, Jia W, Giwa R, Field RL, Moley JR, Kopecky BJ, Chan MM, Yang BQ, Sabio JM, Walker EC, Osorio O, Bredemeyer AL, Pietka T, Alexander-Brett J, Morley SC, Artyomov MN, Abumrad NA, Schilling J, Lavine K, Crewe C, Brestoff JR | Cell metabolism | 36070756 | Cell Metab | 2022 Oct 4 |
| Multifaceted mitochondrial quality control in brown adipose tissue. | Aquilano K, Zhou B, Brestoff JR, Lettieri-Barbato D | Trends in cell biology | 36272883 | Trends Cell Biol | 2023 Jun |
| Burning Fat to Fuel EVs. | Crewe C, Brestoff JR | Diabetes | 37862579 | Diabetes | 2023 Nov 1 |
| Mitochondria Transfer to CD4(+) T Cells May Alleviate Rheumatoid Arthritis by Suppressing Pro-Inflammatory Cytokine Production. | Giwa R, Brestoff JR | Immunometabolism | 35444834 | Immunometabolism | 2022 |
| Lipid-associated macrophages reshape BAT cell identity in obesity. | Sciarretta F, Ninni A, Zaccaria F, Chiurchiù V, Bertola A, Karlinsey K, Jia W, Ceci V, Di Biagio C, Xu Z, Gaudioso F, Tortolici F, Tiberi M, Zhang J, Carotti S, Boudina S, Grumati P, Zhou B, Brestoff JR, Ivanov S, Aquilano K, Lettieri-Barbato D | Cell reports | 38963761 | Cell Rep | 2024 Jul 23 |
| A guide to studying mitochondria transfer. | Tiash S, Brestoff JR, Crewe C | Nature cell biology | 37853133 | Nat Cell Biol | 2023 Nov |
| Future Directions in Single-Session Youth Mental Health Interventions. | Schleider JL, Dobias ML, Sung JY, Mullarkey MC | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 31799863 | J Clin Child Adolesc Psychol | 2020 Mar-Apr |
| Embracing Scientific Humility and Complexity: Learning "What Works for Whom" in Youth Psychotherapy Research. | Mullarkey MC, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 34096811 | J Clin Child Adolesc Psychol | 2021 Jul-Aug |
| Not niche: eating disorders as an example in the dangers of overspecialisation. | Haynos AF, Egbert AH, Fitzsimmons-Craft EE, Levinson CA, Schleider JL | The British journal of psychiatry : the journal of mental science | 38097370 | Br J Psychiatry | 2024 Mar |
| Structural Correlates of Mental Health Support Access among Sexual Minority Youth of Color during COVID-19. | Roulston C, McKetta S, Price M, Fox KR, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 35259041 | J Clin Child Adolesc Psychol | 2023 Sep 3 |
| Linguistic distancing predicts response to a digital single-session intervention for adolescent depression. | Cohen KA, Shroff A, Nook EC, Schleider JL | Behaviour research and therapy | 36323056 | Behav Res Ther | 2022 Dec |
| The fundamental need for lived experience perspectives in developing and evaluating psychotherapies. | Schleider JL | Journal of consulting and clinical psychology | 36795434 | J Consult Clin Psychol | 2023 Mar |
| Ecological-Systems Contributors to Internalizing Symptoms in a US Sample of Adolescents During the COVID-19 Pandemic. | Thorpe D, Mirhashem R, Shen J, Roulston C, Fox K, Schleider J | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37616119 | J Clin Child Adolesc Psychol | 2023 Aug 24 |
| Mixed-Methods Examination of Adolescent-Reported Barriers to Accessing Mental Health Services. | Mora Ringle VA, Sung JY, Roulston CA, Schleider JL | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 37804301 | J Adolesc Health | 2024 Feb |
| Accessibility and Utility of an Electronic Self-Guided Safety Plan for Adolescents. | Methi N, Weeks I, Hunt R, McGuire TC, Rubin A, Decker M, Schleider JL, Wang SB, Fox K | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 39312731 | J Clin Child Adolesc Psychol | 2024 Nov-Dec |
| A randomized trial of online single-session interventions for adolescent depression during COVID-19. | Schleider JL, Mullarkey MC, Fox KR, Dobias ML, Shroff A, Hart EA, Roulston CA | Nature human behaviour | 34887544 | Nat Hum Behav | 2022 Feb |
| Acceptability and Utility of an Open-Access, Online Single-Session Intervention Platform for Adolescent Mental Health. | Schleider JL, Dobias M, Sung J, Mumper E, Mullarkey MC | JMIR mental health | 32602846 | JMIR Ment Health | 2020 Jun 30 |
| Retiring, Rethinking, and Reconstructing the Norm of Once-Weekly Psychotherapy. | Schleider JL, Dobias ML, Mullarkey MC, Ollendick T | Administration and policy in mental health | 32989621 | Adm Policy Ment Health | 2021 Jan |
| The impact of COVID-19 on U.S. adolescents: loss of basic needs and engagement in health risk behaviors. | Shroff A, Fassler J, Fox KR, Schleider JL | Current psychology (New Brunswick, N.J.) | 35095242 | Curr Psychol | 2022 Jan 22 |
| Beliefs about depression relate to active and avoidant coping in high-symptom adolescents. | Pinder JB, Ahuvia IL, Chen S, Schleider JL | Journal of affective disorders | 37977300 | J Affect Disord | 2024 Feb 1 |
| Empowering Anxious Parents to Manage Child Avoidance Behaviors: Randomized Control Trial of a Single-Session Intervention for Parental Accommodation. | Sung JY, Mumper E, Schleider JL | JMIR mental health | 34255718 | JMIR Ment Health | 2021 Jul 6 |
| Single-Session Interventions Embedded Within Tumblr: Acceptability, Feasibility, and Utility Study. | Dobias ML, Morris RR, Schleider JL | JMIR formative research | 35877163 | JMIR Form Res | 2022 Jul 25 |
| Brief Interventions for Self-injurious Thoughts and Behaviors in Young People: A Systematic Review. | Dobias ML, Chen S, Fox KR, Schleider JL | Clinical child and family psychology review | 36715874 | Clin Child Fam Psychol Rev | 2023 Jun |
| Realizing the untapped promise of single-session interventions for eating disorders. | Schleider JL, Smith AC, Ahuvia I | The International journal of eating disorders | 36815724 | Int J Eat Disord | 2023 May |
| Referring Adolescent Primary Care Patients to Single-Session Interventions for Anxiety and Depression: Protocol for a Feasibility Study. | Eyllon M, Dalal M, Jans L, Sotomayor I, Peloquin G, Yon J, Fritz R, Schleider J | JMIR research protocols | 37556202 | JMIR Res Protoc | 2023 Aug 9 |
| Sexual Health Education Experiences and Recommendations from the Perspective of LGBTQ+ Youth. | Hobaica S, Szkody E, Sotomayor I, Liao J, Schleider JL | Journal of sex research | 38880957 | J Sex Res | 2024 Jun 16 |
| A randomized controlled trial comparing brief online self-guided interventions for loneliness. | Kaveladze BT, Gastelum SF, Ngo DC, Delacruz P, Cohen KA, Käll A, Andersson G, Schleider JL, Schueller SM | Journal of consulting and clinical psychology | 39325409 | J Consult Clin Psychol | 2025 Jan |
| When is Psychotherapy Brief? Considering Sociodemographic Factors, Problem Complexity, and Problem Type in U.S. Adolescents. | Abel MR, Bianco A, Gilbert R, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 32356677 | J Clin Child Adolesc Psychol | 2022 Sep-Oct |
| Loneliness in Gender-Diverse and Sexual Orientation-Diverse Adolescents: Measurement Invariance Analyses and Between-Group Comparisons. | McDanal R, Schleider JL, Fox KR, Eaton NR | Assessment | 34963320 | Assessment | 2023 Apr |
| Web-Based Single Session Intervention for Perceived Control Over Anxiety During COVID-19: Randomized Controlled Trial. | Mullarkey M, Dobias M, Sung J, Ahuvia I, Shumake J, Beevers C, Schleider J | JMIR mental health | 35230962 | JMIR Ment Health | 2022 Apr 12 |
| Developing, Deploying, and Evaluating Digital Mental Health Interventions in Spaces of Online Help- and Information-Seeking. | Kruzan KP, Fitzsimmons-Craft EE, Dobias M, Schleider JL, Pratap A | Procedia computer science | 37063642 | Procedia Comput Sci | 2022 |
| Technology Matters: Online, self-help single session interventions could expand current provision, improving early access to help for young people with depression symptoms, including minority groups. | Loades ME, Schleider JL | Child and adolescent mental health | 37415054 | Child Adolesc Ment Health | 2023 Nov |
| Adolescents' beliefs about what symptoms constitute depression: Are more expansive definitions helpful or harmful? | Ahuvia IL, Fox KR, Schleider JL | SSM. Mental health | 38188868 | SSM Ment Health | 2023 Dec 15 |
| Leveraging the Strengths of Psychologists With Lived Experience of Psychopathology. | Victor SE, Schleider JL, Ammerman BA, Bradford DE, Devendorf AR, Gruber J, Gunaydin LA, Hallion LS, Kaufman EA, Lewis SP, Stage DL | Perspectives on psychological science : a journal of the Association for Psychological Science | 35748769 | Perspect Psychol Sci | 2022 Nov |
| Project Body Neutrality: Piloting a digital single-session intervention for adolescent body image and depression. | Smith AC, Ahuvia I, Ito S, Schleider JL | The International journal of eating disorders | 37129116 | Int J Eat Disord | 2023 Aug |
| A Digital Single-Session Intervention (Project Engage) to Address Fear of Negative Evaluation Among College Students: Pilot Randomized Controlled Trial. | Ghosh A, Cohen KA, Jans L, Busch CA, McDanal R, Yang Y, Cooper KM, Schleider JL | JMIR mental health | 37995114 | JMIR Ment Health | 2023 Nov 23 |
| Brief School-Based Interventions Targeting Student Mental Health or Well-Being: A Systematic Review and Meta-Analysis. | Cohen KA, Ito S, Ahuvia IL, Yang Y, Zhang Y, Renshaw TL, Larson M, Cook C, Hill S, Liao J, Rapoport A, Smock A, Yang M, Schleider JL | Clinical child and family psychology review | 38884838 | Clin Child Fam Psychol Rev | 2024 Sep |
| Serving the Underserved? Uptake, Effectiveness, and Acceptability of Digital SSIs for Rural American Adolescents. | Szkody E, Chang YW, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37931065 | J Clin Child Adolesc Psychol | 2023 Nov 6 |
| Evaluating a treatment selection approach for online single-session interventions for adolescent depression. | Ahuvia IL, Mullarkey MC, Sung JY, Fox KR, Schleider JL | Journal of child psychology and psychiatry, and allied disciplines | 37183368 | J Child Psychol Psychiatry | 2023 Dec |
| Timing matters in (mis)identifying moderators and mediators of digital interventions for eating disorders: Commentary on McClure et al. (2023). | Schleider JL, Smith AC, Graham AK | The International journal of eating disorders | 38450821 | Int J Eat Disord | 2024 May |
| Debate: Where to next for universal school-based mental health interventions? Tensions in prevention - To build better school-based programming, we must start with what we know. | Cohen KA, Bruns EJ, Schleider JL | Child and adolescent mental health | 40018868 | Child Adolesc Ment Health | 2025 Feb 28 |
| Urban scaling of health outcomes: a protocol for a scoping review. | McCulley EM, Mullachery P, Rodriguez D, Diez Roux AV, Bilal U | BMJ open | 31767587 | BMJ Open | 2019 Nov 24 |
| Assessing the Retail Food Environment in Madrid: An Evaluation of Administrative Data against Ground Truthing. | Díez J, Cebrecos A, Galán I, Pérez-Freixo H, Franco M, Bilal U | International journal of environmental research and public health | 31546670 | Int J Environ Res Public Health | 2019 Sep 21 |
| Economic Insecurity and Deaths of Despair in US Counties. | Knapp EA, Bilal U, Dean LT, Lazo M, Celentano DD | American journal of epidemiology | 31172197 | Am J Epidemiol | 2019 Dec 31 |
| [Epidemiologic evidence on the role of hospitality venues in the transmission of COVID-19: A rapid review of the literature]. | Bilal U, Gullón P, Padilla-Bernáldez J | Gaceta sanitaria | 33933322 | Gac Sanit | 2022 Mar-Apr |
| Schnake-Mahl and Bilal Respond to "Structural Racism and COVID-19 Mortality in the US". | Schnake-Mahl AS, Bilal U | American journal of epidemiology | 33710318 | Am J Epidemiol | 2021 Aug 1 |
| A COMPARATIVE CASE STUDY OF WALKING ENVIRONMENT IN MADRID AND PHILADELPHIA USING MULTIPLE SAMPLING METHODS AND STREET VIRTUAL AUDITS. | Gullón P, Bilal U, Sánchez P, Díez J, Lovasi GS, Franco M | Cities & health | 33718600 | Cities Health | 2020 |
| Life expectancy and mortality in 363 cities of Latin America. | Bilal U, Hessel P, Perez-Ferrer C, Michael YL, Alfaro T, Tenorio-Mucha J, Friche AAL, Pina MF, Vives A, Quick H, Alazraqui M, Rodriguez DA, Miranda JJ, Diez-Roux AV, SALURBAL group | Nature medicine | 33495602 | Nat Med | 2021 Mar |
| Linking historical discriminatory housing patterns to the contemporary food environment in Baltimore. | Sadler RC, Bilal U, Furr-Holden CD | Spatial and spatio-temporal epidemiology | 33509435 | Spat Spatiotemporal Epidemiol | 2021 Feb |
| Does a physical activity supportive environment ameliorate or exacerbate socioeconomic inequities in incident coronary heart disease? | Gullon P, Bilal U, Hirsch JA, Rundle AG, Judd S, Safford MM, Lovasi GS | Journal of epidemiology and community health | 33318134 | J Epidemiol Community Health | 2021 Jul |
| Estimating and mapping cigarette butt littering in urban environments: A GIS approach. | Valiente R, Escobar F, Pearce J, Bilal U, Franco M, Sureda X | Environmental research | 32004828 | Environ Res | 2020 Apr |
| Polypill for Population-Level Primary Cardiovascular Prevention in Underserved Populations-A Social Epidemiology Counterargument. | Cainzos-Achirica M, Bilal U | The American journal of medicine | 32442515 | Am J Med | 2020 Oct |
| Accessibility and availability of alcohol outlets around schools: An ecological study in the city of Madrid, Spain, according to socioeconomic area-level. | Martín-Turrero I, Valiente R, Molina-de la Fuente I, Bilal U, Lazo M, Sureda X | Environmental research | 34774513 | Environ Res | 2022 Mar |
| A scaling investigation of urban form features in Latin America cities. | Paiva ASS, Santos GF, Castro CP, Rodriguez DA, Bilal U, Sousa Filho JF, Freitas A, Montes F, Dronova I, Barreto ML, Andrade RFS | PloS one | 38109440 | PLoS One | 2023 |
| Geospatial Data Aggregation Methods for Novel Geographies: Validating Congressional District Life Expectancy Estimates. | Schnake-Mahl A, Anfuso G, Hernandez SM, Bilal U | Epidemiology (Cambridge, Mass.) | 39329432 | Epidemiology | 2025 Jan 1 |
| Area-Level Social Vulnerability and Severe COVID-19: A Case-Control Study Using Electronic Health Records from Multiple Health Systems in the Southeastern Pennsylvania Region. | Mullachery PH, Bilal U, Li R, McClure LA | Journal of urban health : bulletin of the New York Academy of Medicine | 38740710 | J Urban Health | 2024 Aug |
| Excess Mortality during the COVID-19 Pandemic in Cities of Chile: Magnitude, Inequalities, and Urban Determinants. | Alfaro T, Martinez-Folgar K, Vives A, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 35688966 | J Urban Health | 2022 Oct |
| Urban social determinants of non-communicable diseases risk factors in Argentina. | Tumas N, Rodríguez López S, Bilal U, Ortigoza AF, Diez Roux AV | Health & place | 34210611 | Health Place | 2022 Sep |
| Socioeconomic Disparities in Hypertension by Levels of Green Space Availability: A Cross-Sectional Study in Philadelphia, PA. | Koh C, Kondo MC, Rollins H, Bilal U | International journal of environmental research and public health | 35206224 | Int J Environ Res Public Health | 2022 Feb 11 |
| Racial/ethnic and neighbourhood social vulnerability disparities in COVID-19 testing positivity, hospitalization, and in-hospital mortality in a large hospital system in Pennsylvania: A prospective study of electronic health records. | Bilal U, Jemmott JB, Schnake-Mahl A, Murphy K, Momplaisir F | Lancet regional health. Americas | 35262038 | Lancet Reg Health Am | 2022 Jun |
| The urban built environment and adult BMI, obesity, and diabetes in Latin American cities. | Anza-Ramirez C, Lazo M, Zafra-Tanaka JH, Avila-Palencia I, Bilal U, Hernández-Vásquez A, Knoll C, Lopez-Olmedo N, Mazariegos M, Moore K, Rodriguez DA, Sarmiento OL, Stern D, Tumas N, Miranda JJ | Nature communications | 36581636 | Nat Commun | 2022 Dec 29 |
| Health and Environmental Co-Benefits of City Urban Form in Latin America: An Ecological Study. | Avila-Palencia I, Sánchez BN, Rodríguez DA, Perez-Ferrer C, Miranda JJ, Gouveia N, Bilal U, Useche AF, Wilches-Mogollon MA, Moore K, Sarmiento OL, Diez Roux AV | Sustainability | 36926000 | Sustainability | 2022 Nov 8 |
| Urban landscape and street-design factors associated with road-traffic mortality in Latin America between 2010 and 2016 (SALURBAL): an ecological study. | Quistberg DA, Hessel P, Rodriguez DA, Sarmiento OL, Bilal U, Caiaffa WT, Miranda JJ, de Pina MF, Hernández-Vásquez A, Diez Roux AV | The Lancet. Planetary health | 35150622 | Lancet Planet Health | 2022 Feb |
| Urban Scaling of Health Outcomes: a Scoping Review. | McCulley EM, Mullachery PH, Ortigoza AF, Rodríguez DA, Diez Roux AV, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 35513600 | J Urban Health | 2022 Jun |
| Higher COVID-19 Vaccination And Narrower Disparities In US Cities With Paid Sick Leave Compared To Those Without. | Schnake-Mahl AS, O'Leary G, Mullachery PH, Skinner A, Kolker J, Diez Roux AV, Raifman JR, Bilal U | Health affairs (Project Hope) | 36343316 | Health Aff (Millwood) | 2022 Nov |
| Evaluation of the national sobriety checkpoints program in Mexico: a difference-in-difference approach with variation in timing of program adoption. | Mullachery PH, Quistberg DA, Lazo M, Indvik K, Perez-Ferrer C, López-Olmedo N, Colchero MA, Bilal U | Injury epidemiology | 36411475 | Inj Epidemiol | 2022 Nov 21 |
| Heterogeneity in Spatial Inequities in COVID-19 Vaccination Across 16 Large US Cities. | Bilal U, Mullachery PH, Schnake-Mahl A, Rollins H, McCulley E, Kolker J, Barber S, Diez Roux AV | American journal of epidemiology | 35452081 | Am J Epidemiol | 2022 Aug 22 |
| Access to and availability of exercise facilities in Madrid: an equity perspective. | Cereijo L, Gullón P, Cebrecos A, Bilal U, Santacruz JA, Badland H, Franco M | International journal of health geographics | 31266518 | Int J Health Geogr | 2019 Jul 2 |
| Indoor Dining and In-Person Learning: A Comparison of 30 US Cities. | O'Leary G, Schnake-Mahl AS, Vaidya V, Bilal U, Kolker J | International journal of environmental research and public health | 34682712 | Int J Environ Res Public Health | 2021 Oct 19 |
| The effect of population mobility on COVID-19 incidence in 314 Latin American cities: a longitudinal ecological study with mobile phone location data. | Kephart JL, Delclòs-Alió X, Rodríguez DA, Sarmiento OL, Barrientos-Gutiérrez T, Ramirez-Zea M, Quistberg DA, Bilal U, Diez Roux AV | The Lancet. Digital health | 34456179 | Lancet Digit Health | 2021 Nov |
| Built environment profiles for Latin American urban settings: The SALURBAL study. | Sarmiento OL, Useche AF, Rodriguez DA, Dronova I, Guaje O, Montes F, Stankov I, Wilches MA, Bilal U, Wang X, Guzmán LA, Peña F, Quistberg DA, Guerra-Gomez JA, Diez Roux AV | PloS one | 34699532 | PLoS One | 2021 |
| The Impact of Keeping Indoor Dining Closed on COVID-19 Rates Among Large US Cities: A Quasi-Experimental Design. | Schnake-Mahl AS, O'Leary G, Mullachery PH, Vaidya V, Connor G, Rollins H, Kolker J, Diez Roux AV, Bilal U | Epidemiology (Cambridge, Mass.) | 34799474 | Epidemiology | 2022 Mar 1 |
| Validation of a neighborhood-level COVID Local Risk Index in 47 large U.S. cities. | Spoer BR, McCulley E, Lampe TM, Hsieh PY, Chen A, Ofrane R, Rollins H, Thorpe LE, Bilal U, Gourevitch MN | Health & place | 35623163 | Health Place | 2022 Jul |
| Changes in Racial/Ethnic Disparities in Opioid-Related Outcomes in Urban Areas during the COVID-19 Pandemic: A Rapid Review of the Literature. | Moran KM, Mullachery PH, Lankenau S, Bilal U | International journal of environmental research and public health | 35954640 | Int J Environ Res Public Health | 2022 Jul 29 |
| Mapping the visibility of smokers across a large capital city. | Valiente R, Escobar F, Pearce J, Bilal U, Franco M, Sureda X | Environmental research | 31706598 | Environ Res | 2020 Jan |
| Impact of the COVID-19 pandemic on life expectancy in Madrid (Spain). | Trias-Llimós S, Bilal U | Journal of public health (Oxford, England) | 32542350 | J Public Health (Oxf) | 2020 Aug 18 |
| Social inequities in cardiovascular risk factors in women and men by autonomous regions in Spain. | Gullón P, Díez J, Cainzos-Achirica M, Franco M, Bilal U | Gaceta sanitaria | 32674863 | Gac Sanit | 2021 Jul-Aug |
| Adaptation and Evaluation of the Nutrition Environment Measures Survey in Stores to Assess Mediterranean Food Environments (NEMS-S-MED). | Martínez-García A, Díez J, Fernández-Escobar C, Trescastro-López EM, Pereyra-Zamora P, Ariza C, Bilal U, Franco M | International journal of environmental research and public health | 32992984 | Int J Environ Res Public Health | 2020 Sep 25 |
| Spatial Inequities in COVID-19 Testing, Positivity, Confirmed Cases, and Mortality in 3 U.S. Cities : An Ecological Study. | Bilal U, Tabb LP, Barber S, Diez Roux AV | Annals of internal medicine | 33780289 | Ann Intern Med | 2021 Jul |
| Impact of an enhanced sobriety checkpoints programme and publicity campaign on motor vehicle collisions, injuries and deaths in Leon, MX: a synthetic control study. | Quistberg DA, Perez-Ferrer C, Bilal U, Rodriguez Hernandez JL, Ramírez-Toscano Y, Cardenas Cardenas LM, Junquera-Badilla I, Yamada G, Barrientos-Gutierrez T, Diez Roux AV | Injury prevention : journal of the International Society for Child and Adolescent Injury Prevention | 39038940 | Inj Prev | 2024 Jul 22 |
| Exercise facility availability and incidence of type 2 diabetes and complications in Spain: A population-based retrospective cohort 2015-2018. | Cereijo L, Gullón P, Del Cura I, Valadés D, Bilal U, Franco M, Badland H | Health & place | 37087897 | Health Place | 2023 May |
| Burden of cardiovascular risk factors and disease in five Asian groups in Catalonia: a disaggregated, population-based analysis of 121 000 first-generation Asian immigrants. | Satish P, Vela E, Bilal U, Cleries M, Kanaya AM, Kandula N, Virani SS, Islam N, Valero-Elizondo J, Yahya T, Comin-Colet J, Nasir K, Mauri J, Cainzos-Achirica M | European journal of preventive cardiology | 33969397 | Eur J Prev Cardiol | 2022 May 6 |
| Variation in youth and young adult homicide rates and their association with city characteristics in Latin America: the SALURBAL study. | de Lima Friche AA, Silva UM, Bilal U, Sarmiento OL, de Salles Dias MA, Prado-Galbarro FJ, Briceño-León R, Alazraqui M, Diez-Roux AV, Caiaffa WT | Lancet regional health. Americas | 36970493 | Lancet Reg Health Am | 2023 Apr |
| Spatial Inequities in Life Expectancy in Small Areas of Buenos Aires, Argentina 2015-2017. | Trotta A, Bilal U, Acharya B, Quick H, Moore K, Perner SM, Alazraqui M, Diez Roux A | Journal of urban health : bulletin of the New York Academy of Medicine | 37225944 | J Urban Health | 2023 Jun |
| Ambient nitrogen dioxide in 47,187 neighborhoods across 326 cities in eight Latin American countries: population exposures and associations with urban features. | Kephart JL, Gouveia N, Rodriguez DA, Indvik K, Alfaro T, Texcalac JL, Miranda JJ, Bilal U, Roux AVD | medRxiv : the preprint server for health sciences | 37205591 | medRxiv | 2023 May 2 |
| Exploring inequalities in life expectancy and lifespan variation by race/ethnicity and urbanicity in the United States: 1990 to 2019. | De Ramos IP, Auchincloss AH, Bilal U | SSM - population health | 36148325 | SSM Popul Health | 2022 Sep |
| Reduction in socioeconomic inequalities in self-reported mental health conditions with increasing greenspace exposure. | Kondo MC, McIntire RK, Bilal U, Schinasi LH | Health & place | 36193582 | Health Place | 2022 Nov |
| Heterogeneity in Disparities in Life Expectancy Across US Metropolitan Areas. | Schnake-Mahl AS, Mullachery PH, Purtle J, Li R, Diez Roux AV, Bilal U | Epidemiology (Cambridge, Mass.) | 36220582 | Epidemiology | 2022 Nov 1 |
| Does Urban Greenspace Reduce Mortality Inequalities Based on Poverty, Race, or Both in Philadelphia, PA? | Schinasi LH, Kondo MC, Edwards J, Clougherty JE, De Roos AJ, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 37563520 | J Urban Health | 2023 Aug |
| Social disparities in flood exposure and associations with the urban environment in 44,698 neighborhoods in 276 cities in eight Latin American countries. | Kephart JL, Bilal U, Gouveia N, Sarmiento OL, Shingara E, Moreno KR, Bakhtsiyarava M, Rodriguez JP, Ayala S, Carrasco-Escobar G, Diez Roux AV, SALURBAL-Climate Project | medRxiv : the preprint server for health sciences | 39006415 | medRxiv | 2024 Jul 3 |
| Understanding the obesity dynamics by socioeconomic status in Colombian and Mexican cities using a system dynamics model. | Meisel JD, Esguerra V, Pérez Ferrer C, Stankov I, Montes F, Tumas N, Bilal U, Valdivia JA, Diez Roux AV, Sarmiento OL | Heliyon | 39605831 | Heliyon | 2024 Nov 30 |
| Does geographic availability of alcohol influence drinking in adolescents? A systematic review of literature associations. | Martín-Turrero I, Valiente R, Pastor A, Bilal U, Sureda X | Health & place | 39368139 | Health Place | 2024 Nov |
| Complex Systems Approaches to Diet: A Systematic Review. | Langellier BA, Bilal U, Montes F, Meisel JD, Cardoso LO, Hammond RA | American journal of preventive medicine | 31326011 | Am J Prev Med | 2019 Aug |
| Polypill for Cardiovascular Disease Prevention in an Underserved Population. | Bilal U, Cainzos-Achirica M | The New England journal of medicine | 31875510 | N Engl J Med | 2020 Jan 2 |
| COVID-19 and the worsening of health inequities in Santiago, Chile. | Bilal U, Alfaro T, Vives A | International journal of epidemiology | 33537771 | Int J Epidemiol | 2021 Jul 9 |
| COVID-19, Ambient Air Pollution, and Environmental Health Inequities in Latin American Cities. | Kephart JL, Avila-Palencia I, Bilal U, Gouveia N, Caiaffa WT, Diez Roux AV | Journal of urban health : bulletin of the New York Academy of Medicine | 33471282 | J Urban Health | 2021 Jun |
| Urban scaling of opioid analgesic sales in the United States. | Mullachery PH, Bilal U | PloS one | 34637453 | PLoS One | 2021 |
| Excess Mortality During the COVID-19 Pandemic in Guatemala. | Martinez-Folgar K, Alburez-Gutierrez D, Paniagua-Avila A, Ramirez-Zea M, Bilal U | American journal of public health | 34554821 | Am J Public Health | 2021 Oct |
| Scaling of mortality in 742 metropolitan areas of the Americas. | Bilal U, de Castro CP, Alfaro T, Barrientos-Gutierrez T, Barreto ML, Leveau CM, Martinez-Folgar K, Miranda JJ, Montes F, Mullachery P, Pina MF, Rodriguez DA, Dos Santos GF, Andrade RFS, Diez Roux AV | Science advances | 34878846 | Sci Adv | 2021 Dec 10 |
| Potential impacts of policies to reduce purchasing of ultra-processed foods in Mexico at different stages of the social transition: an agent-based modelling approach. | Langellier BA, Stankov I, Hammond RA, Bilal U, Auchincloss AH, Barrientos-Gutierrez T, Cardoso LO, Diez Roux AV | Public health nutrition | 34895382 | Public Health Nutr | 2022 Jun |
| COVID-19 Outcomes Among the Hispanic Population of 27 Large US Cities, 2020-2021. | De Ramos IP, Lazo M, Schnake-Mahl A, Li R, Martinez-Donate AP, Roux AVD, Bilal U | American journal of public health | 35588187 | Am J Public Health | 2022 Jul |
| Inequalities in life expectancy in six large Latin American cities from the SALURBAL study: an ecological analysis. | Bilal U, Alazraqui M, Caiaffa WT, Lopez-Olmedo N, Martinez-Folgar K, Miranda JJ, Rodriguez DA, Vives A, Diez-Roux AV | The Lancet. Planetary health | 31836433 | Lancet Planet Health | 2019 Dec |
| Variation in Non-external and External Causes of Death in Peru in Relation to the COVID-19 Lockdown. | Calderon-Anyosa RJC, Bilal U, Kaufman JS | The Yale journal of biology and medicine | 33795980 | Yale J Biol Med | 2021 Mar |
| Social inequalities in mobility during and following the COVID-19 associated lockdown of the Madrid metropolitan area in Spain. | Glodeanu A, Gullón P, Bilal U | Health & place | 34022543 | Health Place | 2021 Jul |
| Mortality amenable to healthcare in Latin American cities: a cross-sectional study examining between-country variation in amenable mortality and the role of urban metrics. | Mullachery PH, Rodriguez DA, Miranda JJ, López-Olmedo N, Martinez-Folgar K, Barreto ML, Diez Roux AV, Bilal U | International journal of epidemiology | 34339492 | Int J Epidemiol | 2022 Feb 18 |
| Monitoring life expectancy levels during the COVID-19 pandemic: Example of the unequal impact of the first wave on Spanish regions. | Trias-Llimós S, Riffe T, Bilal U | PloS one | 33152009 | PLoS One | 2020 |
| Gender inequality, women's empowerment, and adolescent birth rates in 363 Latin American cities. | Braverman-Bronstein A, Ortigoza AF, Vidaña-Pérez D, Barrientos-Gutiérrez T, Baldovino-Chiquillo L, Bilal U, Friche AAL, Diez-Canseco F, Maslowsky J, Vives V A, Diez Roux AV | Social science & medicine (1982) | 36446141 | Soc Sci Med | 2023 Jan |
| Urban scaling of opioid overdose deaths in the USA: a cross-sectional study in three periods between 2005 and 2017. | Mullachery PH, Lankenau S, Diez Roux AV, Li R, Henson RM, Bilal U | BMJ open | 35241464 | BMJ Open | 2022 Mar 3 |
| Racial/Ethnic Disparities in Hepatocellular Carcinoma: The Role of Neighborhood Socioeconomic Deprivation. | Lazo M, Martinez-Folgar K, Bilal U | Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology | 35775232 | Cancer Epidemiol Biomarkers Prev | 2022 Jul 1 |
| Inequalities by Income in the Prevalence of Cardiovascular Disease and Its Risk Factors in the Adult Population of Catalonia. | Mullachery PH, Vela E, Cleries M, Comin-Colet J, Nasir K, Diez Roux AV, Cainzos-Achirica M, Mauri J, Bilal U | Journal of the American Heart Association | 36000437 | J Am Heart Assoc | 2022 Sep 6 |
| Considering multiple governance levels in epidemiologic analysis of public policies. | Schnake-Mahl AS, Jahn JL, Purtle J, Bilal U | Social science & medicine (1982) | 36274459 | Soc Sci Med | 2022 Dec |
| Association Between Household Deprivation and Living in Informal Settlements and Incidence of Diarrhea in Children Under 5 in Eleven Latin American Cities. | Alpaugh V, Ortigoza A, Braverman Bronstein A, Pérez-Ferrer C, Wagner-Gutierrez N, Pacifico N, Ezeh A, Caiaffa WT, Lovasi G, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 38652338 | J Urban Health | 2024 Jun |
| Ambient nitrogen dioxide in 47 187 neighbourhoods across 326 cities in eight Latin American countries: population exposures and associations with urban features. | Kephart JL, Gouveia N, Rodríguez DA, Indvik K, Alfaro T, Texcalac-Sangrador JL, Miranda JJ, Bilal U, Diez Roux AV | The Lancet. Planetary health | 38056968 | Lancet Planet Health | 2023 Dec |
| Health and Health-Related Resources in Newly Designated Federally Qualified Opportunity Zones: United States, 2012-2016. | Hirsch JA, Zhao Y, Bilal U, Neckerman KM, Michael YL | American journal of public health | 31944851 | Am J Public Health | 2020 Mar |
| Socioeconomic Inequalities in the Retail Food Environment around Schools in a Southern European Context. | Díez J, Cebrecos A, Rapela A, Borrell LN, Bilal U, Franco M | Nutrients | 31277242 | Nutrients | 2019 Jul 3 |
| Social cross-over in cardiovascular disease: context matters. | Mullachery PH, Bilal U | Heart (British Cardiac Society) | 33568428 | Heart | 2021 May |
| Understanding Immigration as a Social Determinant of Health: Cardiovascular Disease in Hispanics/Latinos and South Asians in the United States. | Guadamuz JS, Kapoor K, Lazo M, Eleazar A, Yahya T, Kanaya AM, Cainzos-Achirica M, Bilal U | Current atherosclerosis reports | 33772650 | Curr Atheroscler Rep | 2021 Mar 27 |
| What Has It Meant for Me to Be an Epidemiologist in 2020? | Bilal U | Epidemiology (Cambridge, Mass.) | 33122555 | Epidemiology | 2021 Jan |
| Longitudinal changes in the retail food environment in Mexico and their association with diabetes. | Pérez-Ferrer C, Auchincloss AH, Barrientos-Gutierrez T, Colchero MA, de Oliveira Cardoso L, Carvalho de Menezes M, Bilal U | Health & place | 33039800 | Health Place | 2020 Nov |
| Inequities in spatial accessibility to COVID-19 testing in 30 large US cities. | Mullachery PH, Li R, Melly S, Kolker J, Barber S, Diez Roux AV, Bilal U | Social science & medicine (1982) | 36049353 | Soc Sci Med | 2022 Oct |
| How education and racial segregation intersect in neighborhoods with persistently low COVID-19 vaccination rates in Philadelphia. | Rich JA, Miech EJ, Bilal U, Corbin TJ | BMC public health | 35614426 | BMC Public Health | 2022 May 25 |
| Tracking COVID-19 Inequities Across Jurisdictions Represented in the Big Cities Health Coalition (BCHC): The COVID-19 Health Inequities in BCHC Cities Dashboard. | Bilal U, McCulley E, Li R, Rollins H, Schnake-Mahl A, Mullachery PH, Vaidya V, Koh C, Dureja K, Sharaf A, Furukawa A, Juliano C, Barber S, Kolker J, Diez Roux AV | American journal of public health | 35420892 | Am J Public Health | 2022 Jun |
| How Can We Measure Alcohol Outlet Density Around Schools? A Comparison Between Two Buffer-Based Methods. | Martín-Turrero I, Sureda X, Escobar F, Bilal U, Berasaluce M, Valiente R | Journal of urban health : bulletin of the New York Academy of Medicine | 37351726 | J Urban Health | 2023 Jun |
| Disaggregating disparities: A case study of heterogenous COVID-19 disparities across waves, geographies, social vulnerability, and political lean in Louisiana. | Schnake-Mahl A, Bilal U | Preventive medicine reports | 35637894 | Prev Med Rep | 2022 Aug |
| Socioeconomic deprivation and changes in the retail food environment of Mexico from 2010 to 2020. | Ramírez-Toscano Y, Pérez-Ferrer C, Bilal U, Auchincloss AH, Barrientos-Gutierrez T | Health & place | 35932595 | Health Place | 2022 Sep |
| Spatial Heterogeneity in Fatal Overdose Rate Trends in Mexican Cities: 2005-2021. | Henson RM, Mullachery PH, Sánchez-Pájaro A, Cruz-Cruz C, Bilal U, Langellier B, Barrientos-Gutiérrez T | American journal of public health | 38723222 | Am J Public Health | 2024 Jul |
| Invited Commentary: Some Social Epidemiologic Lessons From the COVID-19 Pandemic. | Schnake-Mahl AS, Bilal U | American journal of epidemiology | 36617304 | Am J Epidemiol | 2023 Jun 2 |
| Measuring variation in infant mortality and deaths of despair by US congressional district in Pennsylvania: a methodological case study. | Schnake-Mahl A, Anfuso G, Goldstein ND, Purtle J, Eberth JM, Ortigoza A, Bilal U | American journal of epidemiology | 38412272 | Am J Epidemiol | 2024 Jul 8 |
| Variability and social patterning of cancer mortality in 343 Latin American cities: an ecological study. | Alfaro T, Martinez-Folgar K, Stern D, Wilches-Mogollon MA, Muñoz MP, Quick H, Alazraqui M, Ramirez-Zea M, Miranda JJ, Lazo M, Caiaffa WT, Roux AVD, Bilal U | The Lancet. Global health | 39890227 | Lancet Glob Health | 2025 Feb |
| An Integrated Phenotypic and Genotypic Approach Reveals a High-Risk Subtype Association for EBF3 Missense Variants Affecting the Zinc Finger Domain. | Deisseroth CA, Lerma VC, Magyar CL, Pfliger JM, Nayak A, Bliss ND, LeMaire AW, Narayanan V, Balak C, Zanni G, Valente EM, Bertini E, Benke PJ, Wangler MF, Chao HT | Annals of neurology | 35340043 | Ann Neurol | 2022 Jul |
| De novo EIF2AK1 and EIF2AK2 Variants Are Associated with Developmental Delay, Leukoencephalopathy, and Neurologic Decompensation. | Mao D, Reuter CM, Ruzhnikov MRZ, Beck AE, Farrow EG, Emrick LT, Rosenfeld JA, Mackenzie KM, Robak L, Wheeler MT, Burrage LC, Jain M, Liu P, Calame D, Küry S, Sillesen M, Schmitz-Abe K, Tonduti D, Spaccini L, Iascone M, Genetti CA, Koenig MK, Graf M, Tran A, Alejandro M, Undiagnosed Diseases Network, Lee BH, Thiffault I, Agrawal PB, Bernstein JA, Bellen HJ, Chao HT | American journal of human genetics | 32197074 | Am J Hum Genet | 2020 Apr 2 |
| PRUNE1 c.933G>A synonymous variant induces exon 7 skipping, disrupts the DHHA2 domain, and leads to an atypical NMIHBA syndrome presentation: Case report and review of the literature. | Magyar CL, Murdock DR, Burrage LC, Dai H, Lalani SR, Lewis RA, Lin Y, Astudillo MF, Rosenfeld JA, Tran AA, Gibson JB, Undiagnosed Diseases Network, Bacino CA, Lee BH, Chao HT | American journal of medical genetics. Part A | 35194938 | Am J Med Genet A | 2022 Jun |
| Wide range of phenotypic severity in individuals with late truncations unique to the predominant CDKL5 transcript in the brain. | Keehan L, Haviland I, Gofin Y, Swanson LC, El Achkar CM, Schreiber J, VanNoy GE, O'Heir E, O'Donnell-Luria A, Lewis RA, Magoulas P, Tran A, Azamian MS, Chao HT, Pham L, Samaco RC, Elsea S, Thorpe E, Kesari A, Perry D, Lee B, Lalani SR, Rosenfeld JA, Olson HE, Burrage LC, Undiagnosed Diseases Network | American journal of medical genetics. Part A | 35934918 | Am J Med Genet A | 2022 Dec |
| CARD8 is an inflammasome sensor for HIV-1 protease activity. | Wang Q, Gao H, Clark KM, Mugisha CS, Davis K, Tang JP, Harlan GH, DeSelm CJ, Presti RM, Kutluay SB, Shan L | Science (New York, N.Y.) | 33542150 | Science | 2021 Mar 19 |
| BAP1 promotes osteoclast function by metabolic reprogramming. | Rohatgi N, Zou W, Li Y, Cho K, Collins PL, Tycksen E, Pandey G, DeSelm CJ, Patti GJ, Dey A, Teitelbaum SL | Nature communications | 37740028 | Nat Commun | 2023 Sep 22 |
| Dendritic Cell Paucity Leads to Dysfunctional Immune Surveillance in Pancreatic Cancer. | Hegde S, Krisnawan VE, Herzog BH, Zuo C, Breden MA, Knolhoff BL, Hogg GD, Tang JP, Baer JM, Mpoy C, Lee KB, Alexander KA, Rogers BE, Murphy KM, Hawkins WG, Fields RC, DeSelm CJ, Schwarz JK, DeNardo DG | Cancer cell | 32183949 | Cancer Cell | 2020 Mar 16 |
| Intrinsic tumor resistance to CAR T cells is a dynamic transcriptional state that is exploitable with low-dose radiation. | Kim AB, Chou SY, Kang S, Kwon E, Inkman M, Szymanski J, Andruska N, Colgan C, Zhang J, Yang JC, Singh N, DeSelm CJ | Blood advances | 37093643 | Blood Adv | 2023 Sep 26 |
| Chimeric antigen receptor macrophages target and resorb amyloid plaques. | Kim AB, Xiao Q, Yan P, Pan Q, Pandey G, Grathwohl S, Gonzales E, Xu I, Cho Y, Haecker H, Epelman S, Diwan A, Lee JM, DeSelm CJ | JCI insight | 38516884 | JCI Insight | 2024 Feb 6 |
| Chimeric Antigen Receptor Macrophages Target and Resorb Amyloid Plaques in a Mouse Model of Alzheimer's Disease. | Pan Q, Yan P, Kim AB, Xiao Q, Pandey G, Haecker H, Epelman S, Diwan A, Lee JM, DeSelm CJ | bioRxiv : the preprint server for biology | 37162824 | bioRxiv | 2023 May 3 |
| Memory-like Differentiation, Tumor-Targeting mAbs, and Chimeric Antigen Receptors Enhance Natural Killer Cell Responses to Head and Neck Cancer. | Jacobs MT, Wong P, Zhou AY, Becker-Hapak M, Marin ND, Marsala L, Foster M, Foltz JA, Cubitt CC, Tran J, Russler-Germain DA, Neal C, Kersting-Schadek S, Chang L, Schappe T, Pence P, McClain E, Zevallos JP, Rich JT, Paniello RC, Jackson RS, Pipkorn P, Adkins DR, DeSelm CJ, Berrien-Elliott MM, Puram SV, Fehniger TA | Clinical cancer research : an official journal of the American Association for Cancer Research | 37556118 | Clin Cancer Res | 2023 Oct 13 |
| Separating neuroethics from neurohype. | Wexler A | Nature biotechnology | 31399721 | Nat Biotechnol | 2019 Sep |
| Innovative Practice Outside of Medical Institutions. | Wexler A | The American journal of bioethics : AJOB | 31135304 | Am J Bioeth | 2019 Jun |
| Author's response. | Wexler A | Journal of the American Dental Association (1939) | 33413846 | J Am Dent Assoc | 2021 Jan |
| Pregnancy and health in the age of the Internet: A content analysis of online "birth club" forums. | Wexler A, Davoudi A, Weissenbacher D, Choi R, O'Connor K, Cummings H, Gonzalez-Hernandez G | PloS one | 32287266 | PLoS One | 2020 |
| The Future Is P-Tau-Anticipating Direct-to-Consumer Alzheimer Disease Blood Tests. | Largent EA, Wexler A, Karlawish J | JAMA neurology | 33393982 | JAMA Neurol | 2021 Apr 1 |
| Ethical issues in direct-to-consumer healthcare: A scoping review. | Nagappan A, Kalokairinou L, Wexler A | PLOS digital health | 38349902 | PLOS Digit Health | 2024 Feb |
| Mapping the Landscape of Do-it-Yourself Medicine. | Wexler A | Citizen science : theory and practice | 36632334 | Citiz Sci | 2022 |
| Policies of US Companies Offering Direct-to-Consumer Laboratory Tests. | Kalokairinou L, Choi R, Wei NY, Wexler A | JAMA internal medicine | 37721771 | JAMA Intern Med | 2023 Nov 1 |
| To Counsel or Not to Counsel: Physician Attitudes and Experiences with Do-It-Yourself (DIY) Fecal Microbiota Transplant (FMT). | Colt SF, Choi RJ, Wexler A | AJOB empirical bioethics | 38935586 | AJOB Empir Bioeth | 2024 Oct-Dec |
| Direct-to-consumer orthodontics: surveying the user experience. | Wexler A, Nagappan A, Beswerchij A, Choi R | Journal of the American Dental Association (1939) | 32718492 | J Am Dent Assoc | 2020 Aug |
| Realizing Present and Future Promise of DIY Biology and Medicine through a Trust Architecture. | Rasmussen LM, Guerrini CJ, Kuiken T, Nebeker C, Pearlman A, Ware SB, Wexler A, Zettler PJ | The Hastings Center report | 33315254 | Hastings Cent Rep | 2020 Nov |
| The promise of direct-to-consumer COVID-19 testing: ethical and regulatory issues. | Kalokairinou L, Zettler PJ, Nagappan A, Kyweluk MA, Wexler A | Journal of law and the biosciences | 33569177 | J Law Biosci | 2020 Jan-Jun |
| Oversight of direct-to-consumer neurotechnologies. | Wexler A, Reiner PB | Science (New York, N.Y.) | 30655433 | Science | 2019 Jan 18 |
| Ethical and Legal Considerations of Alternative Neurotherapies. | Nagappan A, Kalokairinou L, Wexler A | AJOB neuroscience | 33759705 | AJOB Neurosci | 2021 Oct-Dec |
| The Urgent Need to Better Integrate Neuroscience and Neuroethics. | Wexler A | AJOB neuroscience | 34029492 | AJOB Neurosci | 2020 Jul-Sep |
| Neuroenhancement for sale: assessing the website claims of neurofeedback providers in the United States. | Wexler A, Nagappan A, Kopyto D, Choi R | Journal of cognitive enhancement : towards the integration of theory and practice | 34164596 | J Cogn Enhanc | 2020 Dec |
| Off-Label Promotion of Transcranial Magnetic Stimulation on Provider Websites. | Wexler A, Nagappan A, Kopyto D, Santarnecchi E, Pascual-Leone A | Brain stimulation | 33901705 | Brain Stimul | 2021 May-Jun |
| Pregnant at the start of the pandemic: a content analysis of COVID-19-related posts on online pregnancy discussion boards. | Choi R, Nagappan A, Kopyto D, Wexler A | BMC pregnancy and childbirth | 35710387 | BMC Pregnancy Childbirth | 2022 Jun 16 |
| Understanding the Scope of Do-It-Yourself Fecal Microbiota Transplant. | Ekekezie C, Perler BK, Wexler A, Duff C, Lillis CJ, Kelly CR | The American journal of gastroenterology | 31972620 | Am J Gastroenterol | 2020 Apr |
| Direct-to-Consumer Neurotechnology: A Grounded Appraisal. | Wexler A | AJOB neuroscience | 31642764 | AJOB Neurosci | 2019 Oct-Dec |
| Opportunity Cost or Opportunity Lost: An Empirical Assessment of Ethical Concerns and Attitudes of EEG Neurofeedback Users. | Kalokairinou L, Choi R, Nagappan A, Wexler A | Neuroethics | 36249541 | Neuroethics | 2022 Oct |
| Brain Wellness "Spas"-Anticipating the Off-label Promotion of Psychedelics. | Wexler A, Sisti D | JAMA psychiatry | 35767292 | JAMA Psychiatry | 2022 Aug 1 |
| Neurofeedback as placebo: a case of unintentional deception? | Kalokairinou L, Specker Sullivan L, Wexler A | Journal of medical ethics | 34521768 | J Med Ethics | 2022 Dec |
| Translational Neuroethics: A Vision for a More Integrated, Inclusive, and Impactful Field. | Wexler A, Specker Sullivan L | AJOB neuroscience | 34851808 | AJOB Neurosci | 2023 Oct-Dec |
| Ethical considerations for researchers developing and testing minimal-risk devices. | Wexler A, Largent E | Nature communications | 37087446 | Nat Commun | 2023 Apr 22 |
| Extinction blunts paraventricular thalamic contributions to heroin relapse. | Giannotti G, Gong S, Fayette N, Heinsbroek JA, Orfila JE, Herson PS, Ford CP, Peters J | Cell reports | 34433067 | Cell Rep | 2021 Aug 24 |
| The psychedelic drug DOI reduces heroin motivation by targeting 5-HT2A receptors in a heroin and alcohol co-use model. | Bonilla J, Giannotti G, Kregar NP, Heinsbroek JA, Olson DE, Peters J | Neuropharmacology | 39341333 | Neuropharmacology | 2024 Dec 15 |
| Ventral pallidal regulation of motivated behaviors and reinforcement. | Soares-Cunha C, Heinsbroek JA | Frontiers in neural circuits | 36817646 | Front Neural Circuits | 2023 |
| Glutamatergic Systems and Memory Mechanisms Underlying Opioid Addiction. | Heinsbroek JA, De Vries TJ, Peters J | Cold Spring Harbor perspectives in medicine | 32341068 | Cold Spring Harb Perspect Med | 2021 Mar 1 |
| Oxytocin and orexin systems bidirectionally regulate the ability of opioid cues to bias reward seeking. | Giannotti G, Mottarlini F, Heinsbroek JA, Mandel MR, James MH, Peters J | Translational psychiatry | 36195606 | Transl Psychiatry | 2022 Oct 4 |
| Opposing Regulation of Cocaine Seeking by Glutamate and GABA Neurons in the Ventral Pallidum. | Heinsbroek JA, Bobadilla AC, Dereschewitz E, Assali A, Chalhoub RM, Cowan CW, Kalivas PW | Cell reports | 32049028 | Cell Rep | 2020 Feb 11 |
| Circuit selectivity in drug versus natural reward seeking behaviors. | Nall RW, Heinsbroek JA, Nentwig TB, Kalivas PW, Bobadilla AC | Journal of neurochemistry | 33420731 | J Neurochem | 2021 Jun |
| Cocaine shifts dopamine D2 receptor sensitivity to gate conditioned behaviors. | Gong S, Fayette N, Heinsbroek JA, Ford CP | Neuron | 34506723 | Neuron | 2021 Nov 3 |
| A common limiter circuit for opioid choice and relapse identified in a rodent addiction model. | Heinsbroek JA, Giannotti G, Mandel MR, Josey M, Aston-Jones G, James MH, Peters J | Nature communications | 34373454 | Nat Commun | 2021 Aug 9 |
| Tabernanthalog Reduces Motivation for Heroin and Alcohol in a Polydrug Use Model. | Heinsbroek JA, Giannotti G, Bonilla J, Olson DE, Peters J | Psychedelic medicine (New Rochelle, N.Y.) | 37360328 | Psychedelic Med (New Rochelle) | 2023 Jun 1 |
| Ca(V)3.1 T-type calcium channels are important for spatial memory processing in the dorsal subiculum. | Joksimovic SM, Ghodsi SM, Heinsbroek JA, Orfila JE, Busquet N, Tesic V, Valdez R, Fine-Raquet B, Jevtovic-Todorovic V, Raol YH, Herson PS, Todorovic SM | Neuropharmacology | 36586474 | Neuropharmacology | 2023 Mar 15 |
| Strain-level diversity of symbiont communities between individuals and populations of a bioluminescent fish. | Gould AL, Donohoo SA, Román ED, Neff EE | The ISME journal | 37891426 | ISME J | 2023 Dec |
| Chromosome-Level Genome Assembly of the Bioluminescent Cardinalfish Siphamia tubifer: An Emerging Model for Symbiosis Research. | Gould AL, Henderson JB, Lam AW | Genome biology and evolution | 35349687 | Genome Biol Evol | 2022 Apr 10 |
| Museum Genomics Illuminate the High Specificity of a Bioluminescent Symbiosis for a Genus of Reef Fish. | Gould AL, Fritts-Penniman A, Gaisiner A | Frontiers in ecology and evolution | 34485316 | Front Ecol Evol | 2021 Feb |
| Comparative genomics of symbiotic Photobacterium using highly contiguous genome assemblies from long read sequences. | Gould AL, Henderson JB | Microbial genomics | 38112751 | Microb Genom | 2023 Dec |
| The Goldilocks Oxygen Principle: not too little and not too much. | Flanigan WR, Jain IH | Nature cardiovascular research | 36816751 | Nat Cardiovasc Res | 2022 Dec |
| Oxygen toxicity causes cyclic damage by destabilizing specific Fe-S cluster-containing protein complexes. | Baik AH, Haribowo AG, Chen X, Queliconi BB, Barrios AM, Garg A, Maishan M, Campos AR, Matthay MA, Jain IH | Molecular cell | 36893757 | Mol Cell | 2023 Mar 16 |
| Turning the Oxygen Dial: Balancing the Highs and Lows. | Baik AH, Jain IH | Trends in cell biology | 32386878 | Trends Cell Biol | 2020 Jul |
| Organ-specific fuel rewiring in acute and chronic hypoxia redistributes glucose and fatty acid metabolism. | Midha AD, Zhou Y, Queliconi BB, Barrios AM, Haribowo AG, Chew BTL, Fong COY, Blecha JE, VanBrocklin H, Seo Y, Jain IH | Cell metabolism | 36889284 | Cell Metab | 2023 Mar 7 |
| In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response. | Chen X, Haribowo AG, Baik AH, Fossati A, Stevenson E, Chen YR, Reyes NS, Peng T, Matthay MA, Traglia M, Pico AR, Jarosz DF, Buchwalter A, Ghaemmaghami S, Swaney DL, Jain IH | Science advances | 38064566 | Sci Adv | 2023 Dec 8 |
| Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations. | Loh PR, Genovese G, Handsaker RE, Finucane HK, Reshef YA, Palamara PF, Birmann BM, Talkowski ME, Bakhoum SF, McCarroll SA, Price AL | Nature | 29995854 | Nature | 2018 Jul |
| Deep learning predicts chromosomal instability from histopathology images. | Xu Z, Verma A, Naveed U, Bakhoum SF, Khosravi P, Elemento O | iScience | 33997679 | iScience | 2021 May 21 |
| Breast Radiation Therapy Under COVID-19 Pandemic Resource Constraints-Approaches to Defer or Shorten Treatment From a Comprehensive Cancer Center in the United States. | Braunstein LZ, Gillespie EF, Hong L, Xu A, Bakhoum SF, Cuaron J, Mueller B, McCormick B, Cahlon O, Powell S, Khan AJ | Advances in radiation oncology | 32292842 | Adv Radiat Oncol | 2020 Jul-Aug |
| Regenerative lineages and immune-mediated pruning in lung cancer metastasis. | Laughney AM, Hu J, Campbell NR, Bakhoum SF, Setty M, Lavallée VP, Xie Y, Masilionis I, Carr AJ, Kottapalli S, Allaj V, Mattar M, Rekhtman N, Xavier JB, Mazutis L, Poirier JT, Rudin CM, Pe'er D, Massagué J | Nature medicine | 32042191 | Nat Med | 2020 Feb |
| The clinical and molecular significance associated with STING signaling in breast cancer. | Parkes EE, Humphries MP, Gilmore E, Sidi FA, Bingham V, Phyu SM, Craig S, Graham C, Miller J, Griffin D, Salto-Tellez M, Madden SF, Kennedy RD, Bakhoum SF, McQuaid S, Buckley NE | NPJ breast cancer | 34172750 | NPJ Breast Cancer | 2021 Jun 25 |
| Loss of polycomb repressive complex 1 activity and chromosomal instability drive uveal melanoma progression. | Bakhoum MF, Francis JH, Agustinus A, Earlie EM, Di Bona M, Abramson DH, Duran M, Masilionis I, Molina E, Shoushtari AN, Goldbaum MH, Mischel PS, Bakhoum SF, Laughney AM | Nature communications | 34518527 | Nat Commun | 2021 Sep 13 |
| APOBEC3A drives STING-dependent metastasis. | Bakhoum SF | Nature cancer | 35121905 | Nat Cancer | 2021 Dec |
| Chromosomal instability as a driver of cancer progression. | Chen X, Agustinus AS, Li J, DiBona M, Bakhoum SF | Nature reviews. Genetics | 39075192 | Nat Rev Genet | 2025 Jan |
| Micronuclear collapse from oxidative damage. | Di Bona M, Chen Y, Agustinus AS, Mazzagatti A, Duran MA, Deyell M, Bronder D, Hickling J, Hong C, Scipioni L, Tedeschi G, Martin S, Li J, Ruzgaitė A, Riaz N, Shah P, D'Souza EK, Brodtman DZ, Sidoli S, Diplas B, Jalan M, Lee NY, Ordureau A, Izar B, Laughney AM, Powell S, Gratton E, Santaguida S, Maciejowski J, Ly P, Jeitner TM, Bakhoum SF | Science (New York, N.Y.) | 39208110 | Science | 2024 Aug 30 |
| Loss of Pip4k2c confers liver-metastatic organotropism through insulin-dependent PI3K-AKT pathway activation. | Rogava M, Aprati TJ, Chi WY, Melms JC, Hug C, Davis SH, Earlie EM, Chung C, Deshmukh SK, Wu S, Sledge G, Tang S, Ho P, Amin AD, Caprio L, Gurjao C, Tagore S, Ngo B, Lee MJ, Zanetti G, Wang Y, Chen S, Ge W, Melo LMN, Allies G, Rösler J, Gibney GT, Schmitz OJ, Sykes M, Creusot RJ, Tüting T, Schadendorf D, Röcken M, Eigentler TK, Molotkov A, Mintz A, Bakhoum SF, Beyaz S, Cantley LC, Sorger PK, Meckelmann SW, Tasdogan A, Liu D, Laughney AM, Izar B | Nature cancer | 38286827 | Nat Cancer | 2024 Mar |
| Chromosomal instability as a source of genomic plasticity. | Al-Rawi DH, Bakhoum SF | Current opinion in genetics & development | 35526333 | Curr Opin Genet Dev | 2022 Jun |
| A Markov chain for numerical chromosomal instability in clonally expanding populations. | Elizalde S, Laughney AM, Bakhoum SF | PLoS computational biology | 30204765 | PLoS Comput Biol | 2018 Sep |
| Co-targeting TGF-β and PD-L1 with radiation therapy: The Goldilocks principle. | Bakhoum SF, Rudin CM | Cell reports. Medicine | 34622240 | Cell Rep Med | 2021 Sep 21 |
| Induction of APOBEC3 Exacerbates DNA Replication Stress and Chromosomal Instability in Early Breast and Lung Cancer Evolution. | Venkatesan S, Angelova M, Puttick C, Zhai H, Caswell DR, Lu WT, Dietzen M, Galanos P, Evangelou K, Bellelli R, Lim EL, Watkins TBK, Rowan A, Teixeira VH, Zhao Y, Chen H, Ngo B, Zalmas LP, Al Bakir M, Hobor S, Grönroos E, Pennycuick A, Nigro E, Campbell BB, Brown WL, Akarca AU, Marafioti T, Wu MY, Howell M, Boulton SJ, Bertoli C, Fenton TR, de Bruin RAM, Maya-Mendoza A, Santoni-Rugiu E, Hynds RE, Gorgoulis VG, Jamal-Hanjani M, McGranahan N, Harris RS, Janes SM, Bartkova J, Bakhoum SF, Bartek J, Kanu N, Swanton C, TRACERx Consortium | Cancer discovery | 33947663 | Cancer Discov | 2021 Oct |
| Non-cell-autonomous cancer progression from chromosomal instability. | Li J, Hubisz MJ, Earlie EM, Duran MA, Hong C, Varela AA, Lettera E, Deyell M, Tavora B, Havel JJ, Phyu SM, Amin AD, Budre K, Kamiya E, Cavallo JA, Garris C, Powell S, Reis-Filho JS, Wen H, Bettigole S, Khan AJ, Izar B, Parkes EE, Laughney AM, Bakhoum SF | Nature | 37612508 | Nature | 2023 Aug |
| Genomic characterization of metastatic patterns from prospective clinical sequencing of 25,000 patients. | Nguyen B, Fong C, Luthra A, Smith SA, DiNatale RG, Nandakumar S, Walch H, Chatila WK, Madupuri R, Kundra R, Bielski CM, Mastrogiacomo B, Donoghue MTA, Boire A, Chandarlapaty S, Ganesh K, Harding JJ, Iacobuzio-Donahue CA, Razavi P, Reznik E, Rudin CM, Zamarin D, Abida W, Abou-Alfa GK, Aghajanian C, Cercek A, Chi P, Feldman D, Ho AL, Iyer G, Janjigian YY, Morris M, Motzer RJ, O'Reilly EM, Postow MA, Raj NP, Riely GJ, Robson ME, Rosenberg JE, Safonov A, Shoushtari AN, Tap W, Teo MY, Varghese AM, Voss M, Yaeger R, Zauderer MG, Abu-Rustum N, Garcia-Aguilar J, Bochner B, Hakimi A, Jarnagin WR, Jones DR, Molena D, Morris L, Rios-Doria E, Russo P, Singer S, Strong VE, Chakravarty D, Ellenson LH, Gopalan A, Reis-Filho JS, Weigelt B, Ladanyi M, Gonen M, Shah SP, Massague J, Gao J, Zehir A, Berger MF, Solit DB, Bakhoum SF, Sanchez-Vega F, Schultz N | Cell | 35120664 | Cell | 2022 Feb 3 |
| Epigenetic dysregulation from chromosomal transit in micronuclei. | Agustinus AS, Al-Rawi D, Dameracharla B, Raviram R, Jones BSCL, Stransky S, Scipioni L, Luebeck J, Di Bona M, Norkunaite D, Myers RM, Duran M, Choi S, Weigelt B, Yomtoubian S, McPherson A, Toufektchan E, Keuper K, Mischel PS, Mittal V, Shah SP, Maciejowski J, Storchova Z, Gratton E, Ly P, Landau D, Bakhoum MF, Koche RP, Sidoli S, Bafna V, David Y, Bakhoum SF | Nature | 37286593 | Nature | 2023 Jul |
| The Multifaceted Role of Chromosomal Instability in Cancer and Its Microenvironment. | Bakhoum SF, Cantley LC | Cell | 30193109 | Cell | 2018 Sep 6 |
| A CINful way to overcome addiction: how chromosomal instability enables cancer to overcome its oncogene addiction. | Bronder D, Bakhoum SF | EMBO molecular medicine | 32072755 | EMBO Mol Med | 2020 Mar 6 |
| The Evolution of STING Signaling and Its Involvement in Cancer. | Vashi N, Bakhoum SF | Trends in biochemical sciences | 33461879 | Trends Biochem Sci | 2021 Jun |
| The Cytosolic DNA-Sensing cGAS-STING Pathway in Cancer. | Kwon J, Bakhoum SF | Cancer discovery | 31852718 | Cancer Discov | 2020 Jan |
| Pervasive chromosomal instability and karyotype order in tumour evolution. | Watkins TBK, Lim EL, Petkovic M, Elizalde S, Birkbak NJ, Wilson GA, Moore DA, Grönroos E, Rowan A, Dewhurst SM, Demeulemeester J, Dentro SC, Horswell S, Au L, Haase K, Escudero M, Rosenthal R, Bakir MA, Xu H, Litchfield K, Lu WT, Mourikis TP, Dietzen M, Spain L, Cresswell GD, Biswas D, Lamy P, Nordentoft I, Harbst K, Castro-Giner F, Yates LR, Caramia F, Jaulin F, Vicier C, Tomlinson IPM, Brastianos PK, Cho RJ, Bastian BC, Dyrskjøt L, Jönsson GB, Savas P, Loi S, Campbell PJ, Andre F, Luscombe NM, Steeghs N, Tjan-Heijnen VCG, Szallasi Z, Turajlic S, Jamal-Hanjani M, Van Loo P, Bakhoum SF, Schwarz RF, McGranahan N, Swanton C | Nature | 32879494 | Nature | 2020 Nov |
| Re-awakening Innate Immune Signaling in Cancer: The Development of Highly Potent ENPP1 Inhibitors. | Cogan D, Bakhoum SF | Cell chemical biology | 33217310 | Cell Chem Biol | 2020 Nov 19 |
| cGAS-STING and the deadly CIN: how chronic inflammation represents a therapeutic vulnerability in chromosomally unstable cancers. | Bakhoum SF | Trends in cancer | 35915014 | Trends Cancer | 2022 Oct |
| Dissecting the treatment-naive ecosystem of human melanoma brain metastasis. | Biermann J, Melms JC, Amin AD, Wang Y, Caprio LA, Karz A, Tagore S, Barrera I, Ibarra-Arellano MA, Andreatta M, Fullerton BT, Gretarsson KH, Sahu V, Mangipudy VS, Nguyen TTT, Nair A, Rogava M, Ho P, Koch PD, Banu M, Humala N, Mahajan A, Walsh ZH, Shah SB, Vaccaro DH, Caldwell B, Mu M, Wünnemann F, Chazotte M, Berhe S, Luoma AM, Driver J, Ingham M, Khan SA, Rapisuwon S, Slingluff CL Jr, Eigentler T, Röcken M, Carvajal R, Atkins MB, Davies MA, Agustinus A, Bakhoum SF, Azizi E, Siegelin M, Lu C, Carmona SJ, Hibshoosh H, Ribas A, Canoll P, Bruce JN, Bi WL, Agrawal P, Schapiro D, Hernando E, Macosko EZ, Chen F, Schwartz GK, Izar B | Cell | 35803246 | Cell | 2022 Jul 7 |
| Intratumoral TREX1 Induction Promotes Immune Evasion by Limiting Type I IFN. | Toufektchan E, Dananberg A, Striepen J, Hickling JH, Shim A, Chen Y, Nichols A, Duran Paez MA, Mohr L, Bakhoum SF, Maciejowski J | Cancer immunology research | 38408184 | Cancer Immunol Res | 2024 Jun 4 |
| Targeting chromosomal instability in patients with cancer. | Al-Rawi DH, Lettera E, Li J, DiBona M, Bakhoum SF | Nature reviews. Clinical oncology | 38992122 | Nat Rev Clin Oncol | 2024 Sep |
| A p62-dependent rheostat dictates micronuclei catastrophe and chromosome rearrangements. | Martin S, Scorzoni S, Cordone S, Mazzagatti A, Beznoussenko GV, Gunn AL, Di Bona M, Eliezer Y, Leor G, Ben-Yishay T, Loffreda A, Cancila V, Rainone MC, Ippolito MR, Martis V, Bedin F, Garrè M, Vaites LP, Vasapolli P, Polo S, Parazzoli D, Tripodo C, Mironov AA, Cuomo A, Ben-David U, Bakhoum SF, Hatch EM, Ly P, Santaguida S | Science (New York, N.Y.) | 39208097 | Science | 2024 Aug 30 |
| Expanding the Role of STING in Cellular Homeostasis and Transformation. | Li J, Bakhoum SF | Trends in cancer | 30961826 | Trends Cancer | 2019 Apr |
| Metastasis and Immune Evasion from Extracellular cGAMP Hydrolysis. | Li J, Duran MA, Dhanota N, Chatila WK, Bettigole SE, Kwon J, Sriram RK, Humphries MP, Salto-Tellez M, James JA, Hanna MG, Melms JC, Vallabhaneni S, Litchfield K, Usaite I, Biswas D, Bareja R, Li HW, Martin ML, Dorsaint P, Cavallo JA, Li P, Pauli C, Gottesdiener L, DiPardo BJ, Hollmann TJ, Merghoub T, Wen HY, Reis-Filho JS, Riaz N, Su SM, Kalbasi A, Vasan N, Powell SN, Wolchok JD, Elemento O, Swanton C, Shoushtari AN, Parkes EE, Izar B, Bakhoum SF | Cancer discovery | 33372007 | Cancer Discov | 2021 May |
| Cancer metastasis as a non-healing wound. | Deyell M, Garris CS, Laughney AM | British journal of cancer | 33731858 | Br J Cancer | 2021 Apr |
| Limited Environmental Serine and Glycine Confer Brain Metastasis Sensitivity to PHGDH Inhibition. | Ngo B, Kim E, Osorio-Vasquez V, Doll S, Bustraan S, Liang RJ, Luengo A, Davidson SM, Ali A, Ferraro GB, Fischer GM, Eskandari R, Kang DS, Ni J, Plasger A, Rajasekhar VK, Kastenhuber ER, Bacha S, Sriram RK, Stein BD, Bakhoum SF, Snuderl M, Cotzia P, Healey JH, Mainolfi N, Suri V, Friedman A, Manfredi M, Sabatini DM, Jones DR, Yu M, Zhao JJ, Jain RK, Keshari KR, Davies MA, Vander Heiden MG, Hernando E, Mann M, Cantley LC, Pacold ME | Cancer discovery | 32571778 | Cancer Discov | 2020 Sep |
| Biochemical, genomic, and epigenomic profiling of isolated cancer cell lines' micronuclei. | Agustinus AS, Bakhoum S | Methods in cell biology | 36064226 | Methods Cell Biol | 2022 |
| The pleiotropic roles of cGAS-STING signaling in the tumor microenvironment. | Li J, Bakhoum SF | Journal of molecular cell biology | 35325182 | J Mol Cell Biol | 2022 Aug 5 |
| APOBEC3 as a driver of genetic intratumor heterogeneity. | Venkatesan S, Angelova M, Bartkova J, Bakhoum SF, Bartek J, Kanu N, Swanton C | Molecular & cellular oncology | 38116246 | Mol Cell Oncol | 2023 |
| Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex. | Wu X, Siggel M, Ovchinnikov S, Mi W, Svetlov V, Nudler E, Liao M, Hummer G, Rapoport TA | Science (New York, N.Y.) | 32327568 | Science | 2020 Apr 24 |
| ColabFold: making protein folding accessible to all. | Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M | Nature methods | 35637307 | Nat Methods | 2022 Jun |
| Scaffolding protein functional sites using deep learning. | Wang J, Lisanza S, Juergens D, Tischer D, Watson JL, Castro KM, Ragotte R, Saragovi A, Milles LF, Baek M, Anishchenko I, Yang W, Hicks DR, Expòsit M, Schlichthaerle T, Chun JH, Dauparas J, Bennett N, Wicky BIM, Muenks A, DiMaio F, Correia B, Ovchinnikov S, Baker D | Science (New York, N.Y.) | 35862514 | Science | 2022 Jul 22 |
| A structural biology community assessment of AlphaFold2 applications. | Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, Dunham AS, Burke D, Borkakoti N, Velankar S, Frost A, Basquin J, Lindorff-Larsen K, Bateman A, Kajava AV, Valencia A, Ovchinnikov S, Durairaj J, Ascher DB, Thornton JM, Davey NE, Stein A, Elofsson A, Croll TI, Beltrao P | Nature structural & molecular biology | 36344848 | Nat Struct Mol Biol | 2022 Nov |
| End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. | Petti S, Bhattacharya N, Rao R, Dauparas J, Thomas N, Zhou J, Rush AM, Koo P, Ovchinnikov S | Bioinformatics (Oxford, England) | 36355460 | Bioinformatics | 2023 Jan 1 |
| De novo design of small beta barrel proteins. | Kim DE, Jensen DR, Feldman D, Tischer D, Saleem A, Chow CM, Li X, Carter L, Milles L, Nguyen H, Kang A, Bera AK, Peterson FC, Volkman BF, Ovchinnikov S, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 36897987 | Proc Natl Acad Sci U S A | 2023 Mar 14 |
| Easy and accurate protein structure prediction using ColabFold. | Kim G, Lee S, Levy Karin E, Kim H, Moriwaki Y, Ovchinnikov S, Steinegger M, Mirdita M | Nature protocols | 39402428 | Nat Protoc | 2025 Mar |
| Scalable protein design using optimization in a relaxed sequence space. | Frank C, Khoshouei A, Fuβ L, Schiwietz D, Putz D, Weber L, Zhao Z, Hattori M, Feng S, de Stigter Y, Ovchinnikov S, Dietz H | Science (New York, N.Y.) | 39446959 | Science | 2024 Oct 25 |
| Structure-based protein design with deep learning. | Ovchinnikov S, Huang PS | Current opinion in chemical biology | 34547592 | Curr Opin Chem Biol | 2021 Dec |
| De novo protein design by deep network hallucination. | Anishchenko I, Pellock SJ, Chidyausiku TM, Ramelot TA, Ovchinnikov S, Hao J, Bafna K, Norn C, Kang A, Bera AK, DiMaio F, Carter L, Chow CM, Montelione GT, Baker D | Nature | 34853475 | Nature | 2021 Dec |
| Cyclic peptide structure prediction and design using AlphaFold. | Rettie SA, Campbell KV, Bera AK, Kang A, Kozlov S, De La Cruz J, Adebomi V, Zhou G, DiMaio F, Ovchinnikov S, Bhardwaj G | bioRxiv : the preprint server for biology | 36865323 | bioRxiv | 2023 Feb 26 |
| Protein language models learn evolutionary statistics of interacting sequence motifs. | Zhang Z, Wayment-Steele HK, Brixi G, Wang H, Kern D, Ovchinnikov S | Proceedings of the National Academy of Sciences of the United States of America | 39467119 | Proc Natl Acad Sci U S A | 2024 Nov 5 |
| Protein interaction networks revealed by proteome coevolution. | Cong Q, Anishchenko I, Ovchinnikov S, Baker D | Science (New York, N.Y.) | 31296772 | Science | 2019 Jul 12 |
| Unraveling the functional dark matter through global metagenomics. | Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E, Novel Metagenome Protein Families Consortium, Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC | Nature | 37821698 | Nature | 2023 Oct |
| Validation of de novo designed water-soluble and transmembrane β-barrels by in silico folding and melting. | Hermosilla AM, Berner C, Ovchinnikov S, Vorobieva AA | Protein science : a publication of the Protein Society | 38864690 | Protein Sci | 2024 Jul |
| Improved protein structure prediction using predicted interresidue orientations. | Yang J, Anishchenko I, Park H, Peng Z, Ovchinnikov S, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 31896580 | Proc Natl Acad Sci U S A | 2020 Jan 21 |
| A demonstration of unsupervised machine learning in species delimitation. | Derkarabetian S, Castillo S, Koo PK, Ovchinnikov S, Hedin M | Molecular phylogenetics and evolution | 31323334 | Mol Phylogenet Evol | 2019 Oct |
| Protein sequence design by conformational landscape optimization. | Norn C, Wicky BIM, Juergens D, Liu S, Kim D, Tischer D, Koepnick B, Anishchenko I, Foldit Players, Baker D, Ovchinnikov S | Proceedings of the National Academy of Sciences of the United States of America | 33712545 | Proc Natl Acad Sci U S A | 2021 Mar 16 |
| Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation. | Cooper CJ, Zheng K, Rush KW, Johs A, Sanders BC, Pavlopoulos GA, Kyrpides NC, Podar M, Ovchinnikov S, Ragsdale SW, Parks JM | Communications biology | 32561885 | Commun Biol | 2020 Jun 19 |
| Accurate prediction of protein structures and interactions using a three-track neural network. | Baek M, DiMaio F, Anishchenko I, Dauparas J, Ovchinnikov S, Lee GR, Wang J, Cong Q, Kinch LN, Schaeffer RD, Millán C, Park H, Adams C, Glassman CR, DeGiovanni A, Pereira JH, Rodrigues AV, van Dijk AA, Ebrecht AC, Opperman DJ, Sagmeister T, Buhlheller C, Pavkov-Keller T, Rathinaswamy MK, Dalwadi U, Yip CK, Burke JE, Garcia KC, Grishin NV, Adams PD, Read RJ, Baker D | Science (New York, N.Y.) | 34282049 | Science | 2021 Aug 20 |
| Genomic language model predicts protein co-regulation and function. | Hwang Y, Cornman AL, Kellogg EH, Ovchinnikov S, Girguis PR | Nature communications | 38570504 | Nat Commun | 2024 Apr 3 |
| Computational design of soluble and functional membrane protein analogues. | Goverde CA, Pacesa M, Goldbach N, Dornfeld LJ, Balbi PEM, Georgeon S, Rosset S, Kapoor S, Choudhury J, Dauparas J, Schellhaas C, Kozlov S, Baker D, Ovchinnikov S, Vecchio AJ, Correia BE | Nature | 38898281 | Nature | 2024 Jul |
| (18)F-Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography Following Chimeric Antigen Receptor T-cell Therapy in Large B-cell Lymphoma. | Ruff A, Ballard HJ, Pantel AR, Namoglu EC, Hughes ME, Nasta SD, Chong EA, Bagg A, Ruella M, Farwell MD, Svoboda J, Sellmyer MA | Molecular imaging and biology | 34231105 | Mol Imaging Biol | 2021 Dec |
| Visualizing Bacterial Infections With Novel Targeted Molecular Imaging Approaches. | Chen X, Gallagher F, Sellmyer MA, Ordonez AA, Kjaer A, Ohliger M, Wilson DM, Jain SK | The Journal of infectious diseases | 37788506 | J Infect Dis | 2023 Oct 3 |
| Imaging CAR T Cell Trafficking with eDHFR as a PET Reporter Gene. | Sellmyer MA, Richman SA, Lohith K, Hou C, Weng CC, Mach RH, O'Connor RS, Milone MC, Farwell MD | Molecular therapy : the journal of the American Society of Gene Therapy | 31668558 | Mol Ther | 2020 Jan 8 |
| Regulation of eDHFR-tagged proteins with trimethoprim PROTACs. | Etersque JM, Lee IK, Sharma N, Xu K, Ruff A, Northrup JD, Sarkar S, Nguyen T, Lauman R, Burslem GM, Sellmyer MA | Nature communications | 37923771 | Nat Commun | 2023 Nov 3 |
| Molecular imaging of bacterial infections: Overcoming the barriers to clinical translation. | Ordonez AA, Sellmyer MA, Gowrishankar G, Ruiz-Bedoya CA, Tucker EW, Palestro CJ, Hammoud DA, Jain SK | Science translational medicine | 31484790 | Sci Transl Med | 2019 Sep 4 |
| A Chemical Approach for Programmable Protein Outputs Based on Engineered Cell Interactions. | Jacome DA, Northrup JD, Ruff AJ, Reilly SW, Lee IK, Blizard GS, Sellmyer MA | ACS chemical biology | 33351606 | ACS Chem Biol | 2021 Jan 15 |
| Monitoring Therapeutic Response to Anti-FAP CAR T Cells Using [18F]AlF-FAPI-74. | Lee IK, Noguera-Ortega E, Xiao Z, Todd L, Scholler J, Song D, Liousia M, Lohith K, Xu K, Edwards KJ, Farwell MD, June CH, Albelda SM, Puré E, Sellmyer MA | Clinical cancer research : an official journal of the American Association for Cancer Research | 35972732 | Clin Cancer Res | 2022 Dec 15 |
| Building the Bridge: Molecular Imaging Biomarkers for 21(st) Century Cancer Therapies. | Sellmyer MA, Lee IK, Mankoff DA | Journal of nuclear medicine : official publication, Society of Nuclear Medicine | 34446450 | J Nucl Med | 2021 Aug 26 |
| Imaging sensitive and drug-resistant bacterial infection with [11C]-trimethoprim. | Lee IK, Jacome DA, Cho JK, Tu V, Young AJ, Dominguez T, Northrup JD, Etersque JM, Lee HS, Ruff A, Aklilu O, Bittinger K, Glaser LJ, Dorgan D, Hadjiliadis D, Kohli RM, Mach RH, Mankoff DA, Doot RK, Sellmyer MA | The Journal of clinical investigation | 36106638 | J Clin Invest | 2022 Sep 15 |
| A genetically encoded protein tag for control and quantitative imaging of CAR T cell therapy. | Lee IK, Sharma N, Noguera-Ortega E, Liousia M, Baroja ML, Etersque JM, Pham J, Sarkar S, Carreno BM, Linette GP, Puré E, Albelda SM, Sellmyer MA | Molecular therapy : the journal of the American Society of Gene Therapy | 37919903 | Mol Ther | 2023 Dec 6 |
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| Deep learning predicts the impact of regulatory variants on cell-type-specific enhancers in the brain. | Zheng A, Shen Z, Glass CK, Gymrek M | Bioinformatics advances | 36726730 | Bioinform Adv | 2023 |
| A reference haplotype panel for genome-wide imputation of short tandem repeats. | Saini S, Mitra I, Mousavi N, Fotsing SF, Gymrek M | Nature communications | 30353011 | Nat Commun | 2018 Oct 23 |
| The impact of short tandem repeat variation on gene expression. | Fotsing SF, Margoliash J, Wang C, Saini S, Yanicky R, Shleizer-Burko S, Goren A, Gymrek M | Nature genetics | 31676866 | Nat Genet | 2019 Nov |
| WebSTR: A Population-wide Database of Short Tandem Repeat Variation in Humans. | Lundström OS, Adriaan Verbiest M, Xia F, Jam HZ, Zlobec I, Anisimova M, Gymrek M | Journal of molecular biology | 37678708 | J Mol Biol | 2023 Oct 15 |
| Missing heritability may be hiding in repeats. | Gymrek M, Goren A | Science (New York, N.Y.) | 34554784 | Science | 2021 Sep 24 |
| Polymorphic short tandem repeats make widespread contributions to blood and serum traits. | Margoliash J, Fuchs S, Li Y, Zhang X, Massarat A, Goren A, Gymrek M | Cell genomics | 38116119 | Cell Genom | 2023 Dec 13 |
| Targeted genotyping of variable number tandem repeats with adVNTR. | Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V | Genome research | 30352806 | Genome Res | 2018 Nov |
| TRTools: a toolkit for genome-wide analysis of tandem repeats. | Mousavi N, Margoliash J, Pusarla N, Saini S, Yanicky R, Gymrek M | Bioinformatics (Oxford, England) | 32805020 | Bioinformatics | 2021 May 5 |
| Temporal analysis of type 1 interferon activation in tumor cells following external beam radiotherapy or targeted radionuclide therapy. | Jagodinsky JC, Jin WJ, Bates AM, Hernandez R, Grudzinski JJ, Marsh IR, Chakravarty I, Arthur IS, Zangl LM, Brown RJ, Nystuen EJ, Emma SE, Kerr C, Carlson PM, Sriramaneni RN, Engle JW, Aluicio-Sarduy E, Barnhart TE, Le T, Kim K, Bednarz BP, Weichert JP, Patel RB, Morris ZS | Theranostics | 33995649 | Theranostics | 2021 |
| A multipurpose brachytherapy catheter to enable intratumoral injection. | Jagodinsky JC, Medeiros G, Raj HH, Razuan A, Locsin A, Dempsey TG, Tang B, Chakravarty I, Clark PA, Sriramaneni RN, Jin WJ, Lan KH, Das RK, Miller JR, Suarez-Gonzalez D, Morris ZS | Brachytherapy | 33785280 | Brachytherapy | 2021 Jul-Aug |
| Combination of Bempegaldesleukin and Anti-CTLA-4 Prevents Metastatic Dissemination After Primary Resection or Radiotherapy in a Preclinical Model of Non-Small Cell Lung Cancer. | Bates AM, Brown RJ, Pieper AA, Zangl LM, Arthur I, Carlson PM, Le T, Sosa GA, Clark PA, Sriramaneni RN, Kim K, Patel RB, Morris ZS | Frontiers in oncology | 33937052 | Front Oncol | 2021 |
| Tumor-Specific Inhibition of In Situ Vaccination by Distant Untreated Tumor Sites. | Morris ZS, Guy EI, Werner LR, Carlson PM, Heinze CM, Kler JS, Busche SM, Jaquish AA, Sriramaneni RN, Carmichael LL, Loibner H, Gillies SD, Korman AJ, Erbe AK, Hank JA, Rakhmilevich AL, Harari PM, Sondel PM | Cancer immunology research | 29748391 | Cancer Immunol Res | 2018 Jul |
| NK cells propagate T cell immunity following in situ tumor vaccination. | Jin WJ, Jagodinsky JC, Vera JM, Clark PA, Zuleger CL, Erbe AK, Ong IM, Le T, Tetreault K, Berg T, Rakhmilevich AL, Kim K, Newton MA, Albertini MR, Sondel PM, Morris ZS | Cell reports | 38096050 | Cell Rep | 2023 Dec 26 |
| MRI-Guided Radiation Therapy. | Lee SL, Hall WA, Morris ZS, Christensen L, Bassetti M | Advances in oncology | 37064601 | Adv Oncol | 2021 May |
| Priming and Propagating Anti-tumor Immunity: Focal Hypofractionated Radiation for in Situ Vaccination and Systemic Targeted Radionuclide Theranostics for Immunomodulation of Tumor Microenvironments. | Jagodinsky JC, Morris ZS | Seminars in radiation oncology | 32381297 | Semin Radiat Oncol | 2020 Apr |
| In situ vaccination at a peripheral tumor site augments response against melanoma brain metastases. | Clark PA, Sriramaneni RN, Jin WJ, Jagodinsky JC, Bates AM, Jaquish AA, Anderson BR, Le T, Lubin JA, Chakravarty I, Arthur IS, Heinze CM, Guy EI, Kler J, Klar KA, Carlson PM, Kim KM, Kuo JS, Morris ZS | Journal for immunotherapy of cancer | 32690669 | J Immunother Cancer | 2020 Jul |
| Combination of radiation therapy, bempegaldesleukin, and checkpoint blockade eradicates advanced solid tumors and metastases in mice. | Pieper AA, Rakhmilevich AL, Spiegelman DV, Patel RB, Birstler J, Jin WJ, Carlson PM, Charych DH, Hank JA, Erbe AK, Overwijk WW, Morris ZS, Sondel PM | Journal for immunotherapy of cancer | 34172518 | J Immunother Cancer | 2021 Jun |
| ATM inhibition augments type I interferon response and antitumor T-cell immunity when combined with radiation therapy in murine tumor models. | Jin WJ, Zangl LM, Hyun M, Massoud E, Schroeder K, Alexandridis RA, Morris ZS | Journal for immunotherapy of cancer | 37730275 | J Immunother Cancer | 2023 Sep |
| Multifunctional nanoparticle potentiates the in situ vaccination effect of radiation therapy and enhances response to immune checkpoint blockade. | Zhang Y, Sriramaneni RN, Clark PA, Jagodinsky JC, Ye M, Jin W, Wang Y, Bates A, Kerr CP, Le T, Allawi R, Wang X, Xie R, Havighurst TC, Chakravarty I, Rakhmilevich AL, O'Leary KA, Schuler LA, Sondel PM, Kim K, Gong S, Morris ZS | Nature communications | 35999216 | Nat Commun | 2022 Aug 23 |
| (90)Y-NM600 targeted radionuclide therapy induces immunologic memory in syngeneic models of T-cell Non-Hodgkin's Lymphoma. | Hernandez R, Walker KL, Grudzinski JJ, Aluicio-Sarduy E, Patel R, Zahm CD, Pinchuk AN, Massey CF, Bitton AN, Brown RJ, Sondel PM, Morris ZS, Engle JW, Capitini CM, Weichert JP | Communications biology | 30820474 | Commun Biol | 2019 |
| Transcriptional-mediated effects of radiation on the expression of immune susceptibility markers in melanoma. | Werner LR, Kler JS, Gressett MM, Riegert M, Werner LK, Heinze CM, Kern JG, Abbariki M, Erbe AK, Patel RB, Sriramaneni RN, Harari PM, Morris ZS | Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology | 28893414 | Radiother Oncol | 2017 Sep |
| Tumor-Specific Antibody, Cetuximab, Enhances the In Situ Vaccine Effect of Radiation in Immunologically Cold Head and Neck Squamous Cell Carcinoma. | Jin WJ, Erbe AK, Schwarz CN, Jaquish AA, Anderson BR, Sriramaneni RN, Jagodinsky JC, Bates AM, Clark PA, Le T, Lan KH, Chen Y, Kim K, Morris ZS | Frontiers in immunology | 33281820 | Front Immunol | 2020 |
| In situ Vaccine Plus Checkpoint Blockade Induces Memory Humoral Response. | Baniel CC, Heinze CM, Hoefges A, Sumiec EG, Hank JA, Carlson PM, Jin WJ, Patel RB, Sriramaneni RN, Gillies SD, Erbe AK, Schwarz CN, Pieper AA, Rakhmilevich AL, Sondel PM, Morris ZS | Frontiers in immunology | 32849544 | Front Immunol | 2020 |
| Using Radiation Therapy to Prime and Propagate an Anti-tumor Immune Response Against Brain Tumors. | Onate AJ, Clark PA, Morris ZS | Neuromolecular medicine | 34081276 | Neuromolecular Med | 2022 Mar |
| Optimizing Flow Cytometric Analysis of Immune Cells in Samples Requiring Cryopreservation from Tumor-Bearing Mice. | Carlson PM, Mohan M, Patel RB, Birstler J, Nettenstrom L, Sheerar D, Fox K, Rodriguez M, Hoefges A, Hernandez R, Zahm C, Kim K, McNeel DG, Weichert J, Morris ZS, Sondel PM | Journal of immunology (Baltimore, Md. : 1950) | 34261667 | J Immunol | 2021 Jul 15 |
| Low-dose targeted radionuclide therapy renders immunologically cold tumors responsive to immune checkpoint blockade. | Patel RB, Hernandez R, Carlson P, Grudzinski J, Bates AM, Jagodinsky JC, Erbe A, Marsh IR, Arthur I, Aluicio-Sarduy E, Sriramaneni RN, Jin WJ, Massey C, Rakhmilevich AL, Vail D, Engle JW, Le T, Kim K, Bednarz B, Sondel PM, Weichert J, Morris ZS | Science translational medicine | 34261797 | Sci Transl Med | 2021 Jul 14 |
| The Radiobiology of Radiopharmaceuticals. | Morris ZS, Wang AZ, Knox SJ | Seminars in radiation oncology | 33246632 | Semin Radiat Oncol | 2021 Jan |
| Local TLR4 stimulation augments in situ vaccination induced via local radiation and anti-CTLA-4 checkpoint blockade through induction of CD8 T-cell independent Th1 polarization. | Jagodinsky JC, Bates AM, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarty I, Nystuen EJ, Kim K, Sondel PM, Jin WJ, Morris ZS | Journal for immunotherapy of cancer | 36192087 | J Immunother Cancer | 2022 Oct |
| Factors impacting the efficacy of the in-situ vaccine with CpG and OX40 agonist. | Pieper AA, Spiegelman DV, Felder MAR, Feils AS, Tsarovsky NW, Zaborek J, Morris ZS, Erbe AK, Rakhmilevich AL, Sondel PM | Cancer immunology, immunotherapy : CII | 37016127 | Cancer Immunol Immunother | 2023 Jul |
| In Situ Vaccination Following Intratumoral Injection of IL2 and Poly-l-lysine/Iron Oxide/CpG Nanoparticles to a Radiated Tumor Site. | Zhang Y, Rahman MM, Clark PA, Sriramaneni RN, Havighurst T, Kerr CP, Zhu M, Jones J, Wang X, Kim K, Gong S, Morris ZS | ACS nano | 37216491 | ACS Nano | 2023 Jun 13 |
| Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade. | Jagodinsky JC, Vera JM, Jin WJ, Shea AG, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarthy I, Allawi RH, Kim K, Harari PM, Sondel PM, Newton MA, Crittenden MR, Gough MJ, Miller JR, Ong IM, Morris ZS | Science translational medicine | 39292804 | Sci Transl Med | 2024 Sep 18 |
| Combined innate and adaptive immunotherapy overcomes resistance of immunologically cold syngeneic murine neuroblastoma to checkpoint inhibition. | Voeller J, Erbe AK, Slowinski J, Rasmussen K, Carlson PM, Hoefges A, VandenHeuvel S, Stuckwisch A, Wang X, Gillies SD, Patel RB, Farrel A, Rokita JL, Maris J, Hank JA, Morris ZS, Rakhmilevich AL, Sondel PM | Journal for immunotherapy of cancer | 31810498 | J Immunother Cancer | 2019 Dec 6 |
| Development of an In Situ Cancer Vaccine via Combinational Radiation and Bacterial-Membrane-Coated Nanoparticles. | Patel RB, Ye M, Carlson PM, Jaquish A, Zangl L, Ma B, Wang Y, Arthur I, Xie R, Brown RJ, Wang X, Sriramaneni R, Kim K, Gong S, Morris ZS | Advanced materials (Deerfield Beach, Fla.) | 31523868 | Adv Mater | 2019 Oct |
| Combining brachytherapy and immunotherapy to achieve in situ tumor vaccination: A review of cooperative mechanisms and clinical opportunities. | Patel RB, Baniel CC, Sriramaneni RN, Bradley K, Markovina S, Morris ZS | Brachytherapy | 30078541 | Brachytherapy | 2018 Nov-Dec |
| The Promise of Combining Radiation Therapy With Immunotherapy. | Jagodinsky JC, Harari PM, Morris ZS | International journal of radiation oncology, biology, physics | 32335187 | Int J Radiat Oncol Biol Phys | 2020 Sep 1 |
| Depth of tumor implantation affects response to in situ vaccination in a syngeneic murine melanoma model. | Carlson PM, Mohan M, Rodriguez M, Subbotin V, Sun CX, Patel RB, Birstler J, Hank JA, Rakhmilevich AL, Morris ZS, Erbe AK, Sondel PM | Journal for immunotherapy of cancer | 33858849 | J Immunother Cancer | 2021 Apr |
| Low-Dose Radiation Potentiates the Propagation of Anti-Tumor Immunity against Melanoma Tumor in the Brain after In Situ Vaccination at a Tumor outside the Brain. | Clark PA, Sriramaneni RN, Bates AM, Jin WJ, Jagodinsky JC, Hernandez R, Le T, Jeffery JJ, Marsh IR, Grudzinski JJ, Aluicio-Sarduy E, Barnhart TE, Anderson BR, Chakravarty I, Arthur IS, Kim K, Engle JW, Bednarz BP, Weichert JP, Morris ZS | Radiation research | 33826741 | Radiat Res | 2021 Jun 1 |
| Radiation Augments the Local Anti-Tumor Effect of In Situ Vaccine With CpG-Oligodeoxynucleotides and Anti-OX40 in Immunologically Cold Tumor Models. | Pieper AA, Zangl LM, Speigelman DV, Feils AS, Hoefges A, Jagodinsky JC, Felder MA, Tsarovsky NW, Arthur IS, Brown RJ, Birstler J, Le T, Carlson PM, Bates AM, Hank JA, Rakhmilevich AL, Erbe AK, Sondel PM, Patel RB, Morris ZS | Frontiers in immunology | 34868010 | Front Immunol | 2021 |
| Antibody landscape of C57BL/6 mice cured of B78 melanoma via a combined radiation and immunocytokine immunotherapy regimen. | Hoefges A, McIlwain SJ, Erbe AK, Mathers N, Xu A, Melby D, Tetreault K, Le T, Kim K, Pinapati RS, Garcia BH, Patel J, Heck M, Feils AS, Tsarovsky N, Hank JA, Morris ZS, Ong IM, Sondel PM | Frontiers in immunology | 38077403 | Front Immunol | 2023 |
| Radiation to all macroscopic sites of tumor permits greater systemic antitumor response to in situ vaccination. | Carlson PM, Patel RB, Birstler J, Rodriquez M, Sun C, Erbe AK, Bates AM, Marsh I, Grudzinski J, Hernandez R, Pieper AA, Feils AS, Rakhmilevich AL, Weichert JP, Bednarz BP, Sondel PM, Morris ZS | Journal for immunotherapy of cancer | 36639155 | J Immunother Cancer | 2023 Jan |
| Developments in Combining Targeted Radionuclide Therapies and Immunotherapies for Cancer Treatment. | Kerr CP, Grudzinski JJ, Nguyen TP, Hernandez R, Weichert JP, Morris ZS | Pharmaceutics | 36678756 | Pharmaceutics | 2022 Dec 30 |
| Online Developmental Science to Foster Innovation, Access, and Impact. | Sheskin M, Scott K, Mills CM, Bergelson E, Bonawitz E, Spelke ES, Fei-Fei L, Keil FC, Gweon H, Tenenbaum JB, Jara-Ettinger J, Adolph KE, Rhodes M, Frank MC, Mehr SA, Schulz L | Trends in cognitive sciences | 32624386 | Trends Cogn Sci | 2020 Sep |
| Infants relax in response to unfamiliar foreign lullabies. | Bainbridge CM, Bertolo M, Youngers J, Atwood S, Yurdum L, Simson J, Lopez K, Xing F, Martin A, Mehr SA | Nature human behaviour | 33077883 | Nat Hum Behav | 2021 Feb |
| Citizen science can help to alleviate the generalizability crisis. | Hilton CB, Mehr SA | The Behavioral and brain sciences | 35139973 | Behav Brain Sci | 2022 Feb 10 |
| Origins of music in credible signaling. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 32843107 | Behav Brain Sci | 2020 Aug 26 |
| Developmental psychologists should adopt citizen science to improve generalization and reproducibility. | Li W, Germine LT, Mehr SA, Srinivasan M, Hartshorne J | Infant and child development | 38515737 | Infant Child Dev | 2024 Jan-Feb |
| Language experience predicts music processing in a half-million speakers of fifty-four languages. | Liu J, Hilton CB, Bergelson E, Mehr SA | Current biology : CB | 37105166 | Curr Biol | 2023 May 22 |
| Acoustic regularities in infant-directed speech and song across cultures. | Hilton CB, Moser CJ, Bertolo M, Lee-Rubin H, Amir D, Bainbridge CM, Simson J, Knox D, Glowacki L, Alemu E, Galbarczyk A, Jasienska G, Ross CT, Neff MB, Martin A, Cirelli LK, Trehub SE, Song J, Kim M, Schachner A, Vardy TA, Atkinson QD, Salenius A, Andelin J, Antfolk J, Madhivanan P, Siddaiah A, Placek CD, Salali GD, Keestra S, Singh M, Collins SA, Patton JQ, Scaff C, Stieglitz J, Cutipa SC, Moya C, Sagar RR, Anyawire M, Mabulla A, Wood BM, Krasnow MM, Mehr SA | Nature human behaviour | 35851843 | Nat Hum Behav | 2022 Nov |
| Music, a piece of many puzzles in developmental science. | Mehr SA, Bortfeld H | Developmental science | 37501524 | Dev Sci | 2023 Sep |
| Expectancy Effects Threaten the Inferential Validity of Synchrony-Prosociality Research. | Atwood S, Schachner A, Mehr SA | Open mind : discoveries in cognitive science | 36891035 | Open Mind (Camb) | 2022 |
| Spectro-temporal acoustical markers differentiate speech from song across cultures. | Albouy P, Mehr SA, Hoyer RS, Ginzburg J, Du Y, Zatorre RJ | Nature communications | 38844457 | Nat Commun | 2024 Jun 6 |
| Sight-over-sound judgments of music performances are replicable effects with limited interpretability. | Mehr SA, Scannell DA, Winner E | PloS one | 30183719 | PLoS One | 2018 |
| Across demographics and recent history, most parents sing to their infants and toddlers daily. | Yan R, Jessani G, Spelke ES, de Villiers P, de Villiers J, Mehr SA | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 34719251 | Philos Trans R Soc Lond B Biol Sci | 2021 Dec 20 |
| The ability to predict actions of others from distributed cues is still developing in 6- to 8-year-old children. | McMahon E, Kim D, Mehr SA, Nakayama K, Spelke ES, Vaziri-Pashkam M | Journal of vision | 34003244 | J Vis | 2021 May 3 |
| Response to vocal music in Angelman syndrome contrasts with Prader-Willi syndrome. | Kotler J, Mehr SA, Egner A, Haig D, Krasnow MM | Evolution and human behavior : official journal of the Human Behavior and Evolution Society | 32655274 | Evol Hum Behav | 2019 Sep |
| Universal interpretations of vocal music. | Yurdum L, Singh M, Glowacki L, Vardy T, Atkinson QD, Hilton CB, Sauter D, Krasnow MM, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 37676911 | Proc Natl Acad Sci U S A | 2023 Sep 12 |
| How games can make behavioural science better. | Long B, Simson J, Buxó-Lugo A, Watson DG, Mehr SA | Nature | 36650244 | Nature | 2023 Jan |
| Toward a productive evolutionary understanding of music. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 34588071 | Behav Brain Sci | 2021 Sep 30 |
| Children infer the behavioral contexts of unfamiliar foreign songs. | Hilton CB, Crowley-de Thierry L, Yan R, Martin A, Mehr SA | Journal of experimental psychology. General | 36222671 | J Exp Psychol Gen | 2023 Mar |
| The presence of fear: How subjective fear, not physiological changes, shapes the experience of presence. | Maymon CN, Crawford MT, Blackburne K, Botes A, Carnegie K, Mehr SA, Meier J, Murphy J, Miles NL, Robinson K, Tooley M, Grimshaw GM | Journal of experimental psychology. General | 38635168 | J Exp Psychol Gen | 2024 Jun |
| Universality and diversity in human song. | Mehr SA, Singh M, Knox D, Ketter DM, Pickens-Jones D, Atwood S, Lucas C, Jacoby N, Egner AA, Hopkins EJ, Howard RM, Hartshorne JK, Jennings MV, Simson J, Bainbridge CM, Pinker S, O'Donnell TJ, Krasnow MM, Glowacki L | Science (New York, N.Y.) | 31753969 | Science | 2019 Nov 22 |
| Sound-induced motion in chimpanzees does not imply shared ancestry for music or dance. | Bertolo M, Singh M, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 33443199 | Proc Natl Acad Sci U S A | 2021 Jan 12 |
| Form and Function in Human Song. | Mehr SA, Singh M, York H, Glowacki L, Krasnow MM | Current biology : CB | 29395919 | Curr Biol | 2018 Feb 5 |
| Cross-Cultural Work in Music Cognition: Challenges, Insights, and Recommendations. | Jacoby N, Margulis EH, Clayton M, Hannon E, Honing H, Iversen J, Klein TR, Mehr SA, Pearson L, Peretz I, Perlman M, Polak R, Ravignani A, Savage PE, Steingo G, Stevens CJ, Trainor L, Trehub S, Veal M, Wald-Fuhrmann M | Music perception | 36936548 | Music Percept | 2020 Feb |
| Mortality Quadrupled Among Opioid-Driven Hospitalizations, Notably Within Lower-Income And Disabled White Populations. | Song Z | Health affairs (Project Hope) | 29200349 | Health Aff (Millwood) | 2017 Dec |
| Health Care Spending Slowed After Rhode Island Applied Affordability Standards To Commercial Insurers. | Baum A, Song Z, Landon BE, Phillips RS, Bitton A, Basu S | Health affairs (Project Hope) | 30715981 | Health Aff (Millwood) | 2019 Feb |
| Moving Beyond the Hospital. | McCarthy CP, Vaduganathan M, Song Z | Circulation | 30571513 | Circulation | 2018 Nov 13 |
| Racial Disparities in Patient-Reported Measures of Physician Cultural Competency Among Cancer Survivors in the United States. | Butler SS, Winkfield KM, Ahn C, Song Z, Dee EC, Mahal BA, Sanford NN | JAMA oncology | 31670752 | JAMA Oncol | 2020 Jan 1 |
| Evaluation of Economic and Clinical Outcomes Under Centers for Medicare & Medicaid Services Mandatory Bundled Payments for Joint Replacements. | Haas DA, Zhang X, Kaplan RS, Song Z | JAMA internal medicine | 31157819 | JAMA Intern Med | 2019 Jul 1 |
| Characteristics of Private Equity-Owned Hospitals in 2018. | Bruch J, Zeltzer D, Song Z | Annals of internal medicine | 32986485 | Ann Intern Med | 2021 Feb |
| Taking account of accountable care. | Song Z | Health services research | 34105147 | Health Serv Res | 2021 Aug |
| Changes in use of low-value services during the COVID-19 pandemic. | Shahzad M, Song Z, Chernew ME, Fendrick AM | The American journal of managed care | 36374618 | Am J Manag Care | 2022 Nov |
| Association of Private Equity Acquisition of Physician Practices With Changes in Health Care Spending and Utilization. | Singh Y, Song Z, Polsky D, Bruch JD, Zhu JM | JAMA health forum | 36218927 | JAMA Health Forum | 2022 Sep 2 |
| Changes in Prescription Drug and Health Care Use Over 9 Years After the Large Drug Price Increase for Colchicine. | Ly DP, Giuriato MA, Song Z | JAMA internal medicine | 37155179 | JAMA Intern Med | 2023 Jul 1 |
| Health Reform and Utilization of High-Volume Hospitals for Complex Cancer Operations. | Loehrer AP, Chang DC, Song Z, Chang GJ | Journal of oncology practice | 29155612 | J Oncol Pract | 2018 Jan |
| Expansion of Private Equity Involvement in Women's Health Care. | Bruch JD, Borsa A, Song Z, Richardson SS | JAMA internal medicine | 32833005 | JAMA Intern Med | 2020 Nov 1 |
| Differences in the Complexity of Office Visits by Physician Specialty: NAMCS 2013-2016. | Goodson JD, Shahbazi S, Rao K, Song Z | Journal of general internal medicine | 32157646 | J Gen Intern Med | 2020 Jun |
| Geographic Variation in Private Equity Penetration Across Select Office-Based Physician Specialties in the US. | Singh Y, Zhu JM, Polsky D, Song Z | JAMA health forum | 35977319 | JAMA Health Forum | 2022 Apr |
| Out-of-Network Laboratory Test Spending, Utilization, and Prices in the US. | Song Z, Lillehaugen T, Wallace J | JAMA | 33904879 | JAMA | 2021 Apr 27 |
| Implications of Changes in Medicare Payment and Documentation for Primary Care Spending and Time Use. | Basu S, Song Z, Phillips RS, Bitton A, Landon BE | Journal of general internal medicine | 32495087 | J Gen Intern Med | 2021 Mar |
| Potential Implications of Private Equity Investments in Health Care Delivery. | Gondi S, Song Z | JAMA | 30816912 | JAMA | 2019 Mar 19 |
| Prices And Cost Sharing For Psychotherapy In Network Versus Out Of Network In The United States. | Benson NM, Song Z | Health affairs (Project Hope) | 32634359 | Health Aff (Millwood) | 2020 Jul |
| Firearm Injuries In Children And Adolescents: Health And Economic Consequences Among Survivors And Family Members. | Song Z, Zubizarreta JR, Giuriato M, Koh KA, Sacks CA | Health affairs (Project Hope) | 37931194 | Health Aff (Millwood) | 2023 Nov |
| Baby Boomers and Beds: a Demographic Challenge for the Ages. | Song Z, Ferris TG | Journal of general internal medicine | 29273896 | J Gen Intern Med | 2018 Mar |
| The US Affordable Care Act: Reflections and directions at the close of a decade. | McIntyre A, Song Z | PLoS medicine | 30807584 | PLoS Med | 2019 Feb |
| Type 2 Myocardial Infarction and the Hospital Readmission Reduction Program. | McCarthy CP, Vaduganathan M, Singh A, Song Z, Blankstein R, Gaggin HK, Wasfy JH, Januzzi JL Jr | Journal of the American College of Cardiology | 30165988 | J Am Coll Cardiol | 2018 Sep 4 |
| Incorporating value into physician payment and patient cost sharing. | Song Z, Navathe AS, Emanuel EJ, Volpp KG | The American journal of managed care | 29553274 | Am J Manag Care | 2018 Mar |
| Physician-initiated payment reform: a new path toward value. | Gondi S, Ferris TG, Patel KK, Song Z | The American journal of managed care | 31518092 | Am J Manag Care | 2019 Sep |
| Physician Payment Disparities and Access to Services-a Look Across Specialties. | Goodson JD, Shahbazi S, Song Z | Journal of general internal medicine | 31385213 | J Gen Intern Med | 2019 Nov |
| Health Care Spending And Use Among People Experiencing Unstable Housing In The Era Of Accountable Care Organizations. | Koh KA, Racine M, Gaeta JM, Goldie J, Martin DP, Bock B, Takach M, O'Connell JJ, Song Z | Health affairs (Project Hope) | 32011951 | Health Aff (Millwood) | 2020 Feb |
| Changes in Health Care Spending, Use, and Clinical Outcomes After Nonfatal Firearm Injuries Among Survivors and Family Members : A Cohort Study. | Song Z, Zubizarreta JR, Giuriato M, Paulos E, Koh KA | Annals of internal medicine | 35377713 | Ann Intern Med | 2022 Jun |
| Changes in Out-of-Pocket Costs for US Hospital Admissions Between December and January Every Year. | Kannan S, Song Z | JAMA health forum | 37145689 | JAMA Health Forum | 2023 May 5 |
| A Policy Framework for the Growing Influence of Private Equity in Health Care Delivery. | Cai C, Song Z | JAMA | 37052901 | JAMA | 2023 May 9 |
| Protecting Patients And Society In An Era Of Private Equity Provider Ownership: Challenges And Opportunities For Policy. | Cai C, Song Z | Health affairs (Project Hope) | 38709967 | Health Aff (Millwood) | 2024 May |
| Out-of-Network Spending on Behavioral Health, 2008-2016. | Song Z, Lillehaugen T, Busch SH, Benson NM, Wallace J | Journal of general internal medicine | 31993946 | J Gen Intern Med | 2021 Jan |
| Will Increasing Primary Care Spending Alone Save Money? | Song Z, Gondi S | JAMA | 31415068 | JAMA | 2019 Oct 8 |
| Improving Affordability and Equity in Medicare Advantage. | Song Z, Basu S | Inquiry : a journal of medical care organization, provision and financing | 31208262 | Inquiry | 2019 Jan-Dec |
| Out-Of-Network Spending Mostly Declined In Privately Insured Populations With A Few Notable Exceptions From 2008 To 2016. | Song Z, Johnson W, Kennedy K, Biniek JF, Wallace J | Health affairs (Project Hope) | 32479236 | Health Aff (Millwood) | 2020 Jun |
| Changes in Hospital Income, Use, and Quality Associated With Private Equity Acquisition. | Bruch JD, Gondi S, Song Z | JAMA internal medicine | 32833006 | JAMA Intern Med | 2020 Nov 1 |
| Health Care Spending, Utilization, and Quality 8 Years into Global Payment. | Song Z, Ji Y, Safran DG, Chernew ME | The New England journal of medicine | 31314969 | N Engl J Med | 2019 Jul 18 |
| Physician Practice Pattern Variations in Common Clinical Scenarios Within 5 US Metropolitan Areas. | Song Z, Kannan S, Gambrel RJ, Marino M, Vaduganathan M, Clapp MA, Seiglie JA, Bloom PP, Malik AN, Resnick MJ | JAMA health forum | 35977237 | JAMA Health Forum | 2022 Jan |
| Racial and Ethnic Disparities in Hospitalization Outcomes Among Medicare Beneficiaries During the COVID-19 Pandemic. | Song Z, Zhang X, Patterson LJ, Barnes CL, Haas DA | JAMA health forum | 35977303 | JAMA Health Forum | 2021 Dec |
| Mortality Before and After Border Wall Construction Along the US-Mexico Border, 1990-2017. | Bruch JD, Barin O, Venkataramani AS, Song Z | American journal of public health | 34197717 | Am J Public Health | 2021 Sep |
| Making the Affordable Care Act Marketplace More Affordable. | Song Z | JAMA health forum | 36046713 | JAMA Health Forum | 2021 May |
| Dental Services Use: Medicare Beneficiaries Experience Immediate And Long-Term Reductions After Enrollment. | Simon L, Song Z, Barnett ML | Health affairs (Project Hope) | 36745837 | Health Aff (Millwood) | 2023 Feb |
| Demographic And Clinical Factors Associated With Long COVID. | Song Z, Giuriato M | Health affairs (Project Hope) | 36877912 | Health Aff (Millwood) | 2023 Mar |
| Health Care Utilization among Homeless-Experienced Adults Who Were Seen by a Mobile Addiction Health Clinic in Boston, Massachusetts: A Quasi-Experimental Study. | Fine DR, Joyce A, Chang Y, Lewis E, Weinstock K, Wright J, Gaeta J, Song Z, Baggett TP | Substance use & misuse | 37184078 | Subst Use Misuse | 2023 |
| Lineage-tracing hematopoietic stem cell origins in vivo to efficiently make human HLF+ HOXA+ hematopoietic progenitors from pluripotent stem cells. | Fowler JL, Zheng SL, Nguyen A, Chen A, Xiong X, Chai T, Chen JY, Karigane D, Banuelos AM, Niizuma K, Kayamori K, Nishimura T, Cromer MK, Gonzalez-Perez D, Mason C, Liu DD, Yilmaz L, Miquerol L, Porteus MH, Luca VC, Majeti R, Nakauchi H, Red-Horse K, Weissman IL, Ang LT, Loh KM | Developmental cell | 38569552 | Dev Cell | 2024 May 6 |
| A stem cell roadmap of ribosome heterogeneity reveals a function for RPL10A in mesoderm production. | Genuth NR, Shi Z, Kunimoto K, Hung V, Xu AF, Kerr CH, Tiu GC, Oses-Prieto JA, Salomon-Shulman REA, Axelrod JD, Burlingame AL, Loh KM, Barna M | Nature communications | 36123354 | Nat Commun | 2022 Sep 19 |
| Creating artificial signaling gradients to spatially pattern engineered tissues. | Zheng SL, Loh KM | Current opinion in biotechnology | 36182872 | Curr Opin Biotechnol | 2022 Dec |
| DNMT3A(R882H) Is Not Required for Disease Maintenance in Primary Human AML, but Is Associated With Increased Leukemia Stem Cell Frequency. | Köhnke T, Karigane D, Hilgart E, Fan AC, Kayamori K, Miyauchi M, Collins CT, Suchy FP, Rangavajhula A, Feng Y, Nakauchi Y, Martinez-Montes E, Fowler JL, Loh KM, Nakauchi H, Koldobskiy MA, Feinberg AP, Majeti R | bioRxiv : the preprint server for biology | 39553934 | bioRxiv | 2024 Oct 29 |
| Long-term ex vivo haematopoietic-stem-cell expansion allows nonconditioned transplantation. | Wilkinson AC, Ishida R, Kikuchi M, Sudo K, Morita M, Crisostomo RV, Yamamoto R, Loh KM, Nakamura Y, Watanabe M, Nakauchi H, Yamazaki S | Nature | 31142833 | Nature | 2019 Jul |
| Antibody Conditioning Enables MHC-Mismatched Hematopoietic Stem Cell Transplants and Organ Graft Tolerance. | George BM, Kao KS, Kwon HS, Velasco BJ, Poyser J, Chen A, Le AC, Chhabra A, Burnett CE, Cajuste D, Hoover M, Loh KM, Shizuru JA, Weissman IL | Cell stem cell | 31204177 | Cell Stem Cell | 2019 Aug 1 |
| Monolayer platform to generate and purify primordial germ-like cells in vitro provides insights into human germline specification. | Vijayakumar S, Sala R, Kang G, Chen A, Pablo MA, Adebayo AI, Cipriano A, Fowler JL, Gomes DL, Ang LT, Loh KM, Sebastiano V | Nature communications | 37709760 | Nat Commun | 2023 Sep 14 |
| Building human artery and vein endothelial cells from pluripotent stem cells, and enduring mysteries surrounding arteriovenous development. | Loh KM, Ang LT | Seminars in cell & developmental biology | 37393122 | Semin Cell Dev Biol | 2024 Mar 1 |
| Improving the safety of human pluripotent stem cell therapies using genome-edited orthogonal safeguards. | Martin RM, Fowler JL, Cromer MK, Lesch BJ, Ponce E, Uchida N, Nishimura T, Porteus MH, Loh KM | Nature communications | 32483127 | Nat Commun | 2020 Jun 1 |
| A critical look: Challenges in differentiating human pluripotent stem cells into desired cell types and organoids. | Fowler JL, Ang LT, Loh KM | Wiley interdisciplinary reviews. Developmental biology | 31746148 | Wiley Interdiscip Rev Dev Biol | 2020 May |
| Dach1 Extends Artery Networks and Protects Against Cardiac Injury. | Raftrey B, Williams M, Rios Coronado PE, Fan X, Chang AH, Zhao M, Roth R, Trimm E, Racelis R, D'Amato G, Phansalkar R, Nguyen A, Chai T, Gonzalez KM, Zhang Y, Ang LT, Loh KM, Bernstein D, Red-Horse K | Circulation research | 34383559 | Circ Res | 2021 Sep 17 |
| A Roadmap for Human Liver Differentiation from Pluripotent Stem Cells. | Ang LT, Tan AKY, Autio MI, Goh SH, Choo SH, Lee KL, Tan J, Pan B, Lee JJH, Lum JJ, Lim CYY, Yeo IKX, Wong CJY, Liu M, Oh JLL, Chia CPL, Loh CH, Chen A, Chen Q, Weissman IL, Loh KM, Lim B | Cell reports | 29466743 | Cell Rep | 2018 Feb 20 |
| Affinity-matured DLL4 ligands as broad-spectrum modulators of Notch signaling. | Gonzalez-Perez D, Das S, Antfolk D, Ahsan HS, Medina E, Dundes CE, Jokhai RT, Egan ED, Blacklow SC, Loh KM, Rodriguez PC, Luca VC | Nature chemical biology | 36050494 | Nat Chem Biol | 2023 Jan |
| Generating human artery and vein cells from pluripotent stem cells highlights the arterial tropism of Nipah and Hendra viruses. | Ang LT, Nguyen AT, Liu KJ, Chen A, Xiong X, Curtis M, Martin RM, Raftry BC, Ng CY, Vogel U, Lander A, Lesch BJ, Fowler JL, Holman AR, Chai T, Vijayakumar S, Suchy FP, Nishimura T, Bhadury J, Porteus MH, Nakauchi H, Cheung C, George SC, Red-Horse K, Prescott JB, Loh KM | Cell | 35738284 | Cell | 2022 Jul 7 |
| Functional Profiling of Antibody Immune Repertoires in Convalescent Zika Virus Disease Patients. | Fahad AS, Timm MR, Madan B, Burgomaster KE, Dowd KA, Normandin E, Gutiérrez-González MF, Pennington JM, De Souza MO, Henry AR, Laboune F, Wang L, Ambrozak DR, Gordon IJ, Douek DC, Ledgerwood JE, Graham BS, Castilho LR, Pierson TC, Mascola JR, DeKosky BJ | Frontiers in immunology | 33732238 | Front Immunol | 2021 |
| Antibody-dependent enhancement and SARS-CoV-2 vaccines and therapies. | Lee WS, Wheatley AK, Kent SJ, DeKosky BJ | Nature microbiology | 32908214 | Nat Microbiol | 2020 Oct |
| VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage. | Shen CH, DeKosky BJ, Guo Y, Xu K, Gu Y, Kilam D, Ko SH, Kong R, Liu K, Louder MK, Ou L, Zhang B, Chao CW, Corcoran MM, Feng E, Huang J, Normandin E, O'Dell S, Ransier A, Rawi R, Sastry M, Schmidt SD, Wang S, Wang Y, Chuang GY, Doria-Rose NA, Lin B, Zhou T, Boritz EA, Connors M, Douek DC, Karlsson Hedestam GB, Sheng Z, Shapiro L, Mascola JR, Kwong PD | Cell host & microbe | 32130953 | Cell Host Microbe | 2020 Apr 8 |
| Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site. | Banach BB, Pletnev S, Olia AS, Xu K, Zhang B, Rawi R, Bylund T, Doria-Rose NA, Nguyen TD, Fahad AS, Lee M, Lin BC, Liu T, Louder MK, Madan B, McKee K, O'Dell S, Sastry M, Schön A, Bui N, Shen CH, Wolfe JR, Chuang GY, Mascola JR, Kwong PD, DeKosky BJ | Nature communications | 37989731 | Nat Commun | 2023 Nov 21 |
| Mapping monoclonal anti-SARS-CoV-2 antibody repertoires against diverse coronavirus antigens. | de Souza MO, Madan B, Teng IT, Huang A, Liu L, Fahad AS, Lopez Acevedo SN, Pan X, Sastry M, Gutierrez-Gonzalez M, Yin MT, Zhou T, Ho DD, Kwong PD, DeKosky BJ | Frontiers in immunology | 36119018 | Front Immunol | 2022 |
| Quality Control: Chain Pairing Precision and Monitoring of Cross-Sample Contamination: A Method by the AIRR Community. | Chung CY, Gutiérrez-González M, López Acevedo SN, Fahad AS, DeKosky BJ, AIRR Community | Methods in molecular biology (Clifton, N.J.) | 35622337 | Methods Mol Biol | 2022 |
| Immortalization and functional screening of natively paired human T cell receptor repertoires. | Fahad AS, Chung CY, Lopez Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ | Protein engineering, design & selection : PEDS | 35174859 | Protein Eng Des Sel | 2022 Feb 17 |
| Linking autoantigen properties to mechanisms of immunity. | Griffin JD, Song JY, Sestak JO, DeKosky BJ, Berkland CJ | Advanced drug delivery reviews | 32325104 | Adv Drug Deliv Rev | 2020 |
| The covalent SNAP tag for protein display quantification and low-pH protein engineering. | Jin W, Madan B, Mussman BK, Hailemariam AT, Fahad AS, Wolfe JR, Kwon YD, Zhang B, Shapiro L, Kwong PD, DeKosky BJ | Journal of biotechnology | 32561362 | J Biotechnol | 2020 Aug 20 |
| Ultrasonically-guided flow focusing generates precise emulsion droplets for high-throughput single cell analyses. | Lagerman CE, López Acevedo SN, Fahad AS, Hailemariam AT, Madan B, DeKosky BJ | Journal of bioscience and bioengineering | 30904454 | J Biosci Bioeng | 2019 Aug |
| A molecular trap against COVID-19. | DeKosky BJ | Science (New York, N.Y.) | 32883851 | Science | 2020 Sep 4 |
| Functional interrogation and mining of natively paired human V(H):V(L) antibody repertoires. | Wang B, DeKosky BJ, Timm MR, Lee J, Normandin E, Misasi J, Kong R, McDaniel JR, Delidakis G, Leigh KE, Niezold T, Choi CW, Viox EG, Fahad A, Cagigi A, Ploquin A, Leung K, Yang ES, Kong WP, Voss WN, Schmidt AG, Moody MA, Ambrozak DR, Henry AR, Laboune F, Ledgerwood JE, Graham BS, Connors M, Douek DC, Sullivan NJ, Ellington AD, Mascola JR, Georgiou G | Nature biotechnology | 29309060 | Nat Biotechnol | 2018 Feb |
| Mutational fitness landscapes reveal genetic and structural improvement pathways for a vaccine-elicited HIV-1 broadly neutralizing antibody. | Madan B, Zhang B, Xu K, Chao CW, O'Dell S, Wolfe JR, Chuang GY, Fahad AS, Geng H, Kong R, Louder MK, Nguyen TD, Rawi R, Schön A, Sheng Z, Nimrania R, Wang Y, Zhou T, Lin BC, Doria-Rose NA, Shapiro L, Kwong PD, DeKosky BJ | Proceedings of the National Academy of Sciences of the United States of America | 33649208 | Proc Natl Acad Sci U S A | 2021 Mar 9 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Acevedo SNL, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | SSRN | 32742241 | SSRN | 2020 Jul 21 |
| The Molecular Mechanisms That Underlie the Immune Biology of Anti-drug Antibody Formation Following Treatment With Monoclonal Antibodies. | Vaisman-Mentesh A, Gutierrez-Gonzalez M, DeKosky BJ, Wine Y | Frontiers in immunology | 33013848 | Front Immunol | 2020 |
| Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses. | Banach BB, Cerutti G, Fahad AS, Shen CH, Oliveira De Souza M, Katsamba PS, Tsybovsky Y, Wang P, Nair MS, Huang Y, Francino-Urdániz IM, Steiner PJ, Gutiérrez-González M, Liu L, López Acevedo SN, Nazzari AF, Wolfe JR, Luo Y, Olia AS, Teng IT, Yu J, Zhou T, Reddem ER, Bimela J, Pan X, Madan B, Laflin AD, Nimrania R, Yuen KY, Whitehead TA, Ho DD, Kwong PD, Shapiro L, DeKosky BJ | Cell reports | 34587480 | Cell Rep | 2021 Oct 5 |
| Neutralizing antibody 5-7 defines a distinct site of vulnerability in SARS-CoV-2 spike N-terminal domain. | Cerutti G, Guo Y, Wang P, Nair MS, Wang M, Huang Y, Yu J, Liu L, Katsamba PS, Bahna F, Reddem ER, Kwong PD, Ho DD, Sheng Z, Shapiro L | Cell reports | 34706271 | Cell Rep | 2021 Nov 2 |
| Antibody-guided structure-based vaccines. | Kwong PD, DeKosky BJ, Ulmer JB | Seminars in immunology | 33246736 | Semin Immunol | 2020 Aug |
| Molecular probes of spike ectodomain and its subdomains for SARS-CoV-2 variants, Alpha through Omicron. | Teng IT, Nazzari AF, Choe M, Liu T, Oliveira de Souza M, Petrova Y, Tsybovsky Y, Wang S, Zhang B, Artamonov M, Madan B, Huang A, Lopez Acevedo SN, Pan X, Ruckwardt TJ, DeKosky BJ, Mascola JR, Misasi J, Sullivan NJ, Zhou T, Kwong PD | PloS one | 35609088 | PLoS One | 2022 |
| Optimized Production of Fc Fusion Proteins by Sortase Enzymatic Ligation. | Apley KD, Laflin AD, Johnson SN, Batrash N, Griffin JD, Berkland CJ, DeKosky BJ | Industrial & engineering chemistry research | 38646185 | Ind Eng Chem Res | 2021 Dec 1 |
| Optimized single-cell gates for yeast display screening. | Pan X, de Souza MO, Figueiras FM, Huang A, Banach BB, Wolfe JR, Pirhanov A, Madan B, DeKosky BJ | Protein engineering, design & selection : PEDS | 39667035 | Protein Eng Des Sel | 2025 Jan 10 |
| Potent SARS-CoV-2 neutralizing antibodies directed against spike N-terminal domain target a single supersite. | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L | Cell host & microbe | 33789084 | Cell Host Microbe | 2021 May 12 |
| Tetrameric Fluorescent Antigen Arrays for Single-Step Identification of Antigen-Specific B Cells. | Apley KD, Griffin JD, Johnson SN, Berkland CJ, DeKosky BJ | Journal of visualized experiments : JoVE | 33165322 | J Vis Exp | 2020 Oct 20 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Lopez Acevedo SN, Madan B, Oliveira de Souza M, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang LA, Abiona OM, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | Cell reports | 33091382 | Cell Rep | 2020 Oct 27 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Lopez Acevedo SN, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | bioRxiv : the preprint server for biology | 32596696 | bioRxiv | 2020 Jun 23 |
| Cell activation-based screening of natively paired human T cell receptor repertoires. | Fahad AS, Chung CY, López Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ | Scientific reports | 37198258 | Sci Rep | 2023 May 17 |
| Bioinformatic Analysis of Natively Paired VH:VL Antibody Repertoires for Antibody Discovery. | Fahad AS, Madan B, DeKosky BJ | Methods in molecular biology (Clifton, N.J.) | 36346608 | Methods Mol Biol | 2023 |
| Antibody screening at reduced pH enables preferential selection of potently neutralizing antibodies targeting SARS-CoV-2. | Madan B, Reddem ER, Wang P, Casner RG, Nair MS, Huang Y, Fahad AS, de Souza MO, Banach BB, López Acevedo SN, Pan X, Nimrania R, Teng IT, Bahna F, Zhou T, Zhang B, Yin MT, Ho DD, Kwong PD, Shapiro L, DeKosky BJ | AIChE journal. American Institute of Chemical Engineers | 34898670 | AIChE J | 2021 Dec |
| Highly protective antimalarial antibodies via precision library generation and yeast display screening. | Banach BB, Tripathi P, Da Silva Pereira L, Gorman J, Nguyen TD, Dillon M, Fahad AS, Kiyuka PK, Madan B, Wolfe JR, Bonilla B, Flynn B, Francica JR, Hurlburt NK, Kisalu NK, Liu T, Ou L, Rawi R, Schön A, Shen CH, Teng IT, Zhang B, Pancera M, Idris AH, Seder RA, Kwong PD, DeKosky BJ | The Journal of experimental medicine | 35736810 | J Exp Med | 2022 Aug 1 |
| Opioids depress breathing through two small brainstem sites. | Bachmutsky I, Wei XP, Kish E, Yackle K | eLife | 32073401 | Elife | 2020 Feb 19 |
| ß-arrestin 2 germline knockout does not attenuate opioid respiratory depression. | Bachmutsky I, Wei XP, Durand A, Yackle K | eLife | 34002697 | Elife | 2021 May 18 |
| Transformation of Our Understanding of Breathing Control by Molecular Tools. | Yackle K | Annual review of physiology | 36323001 | Annu Rev Physiol | 2023 Feb 10 |
| A novel reticular node in the brainstem synchronizes neonatal mouse crying with breathing. | Wei XP, Collie M, Dempsey B, Fortin G, Yackle K | Neuron | 34998469 | Neuron | 2022 Feb 16 |
| Evolution and development of complex eyes: a celebration of diversity. | Koenig KM, Gross JM | Development (Cambridge, England) | 33051250 | Development | 2020 Oct 13 |
| Krüppel-like factor/specificity protein evolution in the Spiralia and the implications for cephalopod visual system novelties. | McCulloch KJ, Koenig KM | Proceedings. Biological sciences | 33081641 | Proc Biol Sci | 2020 Oct 28 |
| Nematostella vectensis exemplifies the exceptional expansion and diversity of opsins in the eyeless Hexacorallia. | McCulloch KJ, Babonis LS, Liu A, Daly CM, Martindale MQ, Koenig KM | EvoDevo | 37735470 | Evodevo | 2023 Sep 21 |
| Highly Efficient Knockout of a Squid Pigmentation Gene. | Crawford K, Diaz Quiroz JF, Koenig KM, Ahuja N, Albertin CB, Rosenthal JJC | Current biology : CB | 32735817 | Curr Biol | 2020 Sep 7 |
| Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields. | Agbleke AA, Amitai A, Buenrostro JD, Chakrabarti A, Chu L, Hansen AS, Koenig KM, Labade AS, Liu S, Nozaki T, Ovchinnikov S, Seeber A, Shaban HA, Spille JH, Stephens AD, Su JH, Wadduwage D | Molecular cell | 32768408 | Mol Cell | 2020 Sep 17 |
| Co-option of the limb patterning program in cephalopod eye development. | Neal S, McCulloch KJ, Napoli FR, Daly CM, Coleman JH, Koenig KM | BMC biology | 34983491 | BMC Biol | 2022 Jan 5 |
| Cephalopod retinal development shows vertebrate-like mechanisms of neurogenesis. | Napoli FR, Daly CM, Neal S, McCulloch KJ, Zaloga AR, Liu A, Koenig KM | Current biology : CB | 36356573 | Curr Biol | 2022 Dec 5 |
| Ensemble-specific deficit in neuronal intrinsic excitability in aged mice. | Chen L, Francisco TR, Baggetta AM, Zaki Y, Ramirez S, Clem RL, Shuman T, Cai DJ | Neurobiology of aging | 36652783 | Neurobiol Aging | 2023 Mar |
| Chronic Gq activation of ventral hippocampal neurons and astrocytes differentially affects memory and behavior. | Suthard RL, Jellinger AL, Surets M, Shpokayte M, Pyo AY, Buzharsky MD, Senne RA, Dorst K, Leblanc H, Ramirez S | Neurobiology of aging | 36801699 | Neurobiol Aging | 2023 May |
| Artificially Enhancing and Suppressing Hippocampus-Mediated Memories. | Chen BK, Murawski NJ, Cincotta C, McKissick O, Finkelstein A, Hamidi AB, Merfeld E, Doucette E, Grella SL, Shpokayte M, Zaki Y, Fortin A, Ramirez S | Current biology : CB | 31130452 | Curr Biol | 2019 Jun 3 |
| Odor modulates the temporal dynamics of fear memory consolidation. | Grella SL, Fortin AH, McKissick O, Leblanc H, Ramirez S | Learning & memory (Cold Spring Harbor, N.Y.) | 32179657 | Learn Mem | 2020 Apr |
| Chronic activation of fear engrams induces extinction-like behavior in ethanol-exposed mice. | Cincotta C, Murawski NJ, Grella SL, McKissick O, Doucette E, Ramirez S | Hippocampus | 32946184 | Hippocampus | 2021 Jan |
| Chronic activation of a negative engram induces behavioral and cellular abnormalities. | Jellinger AL, Suthard RL, Yuan B, Surets M, Ruesch EA, Caban AJ, Liu S, Shpokayte M, Ramirez S | eLife | 38990919 | Elife | 2024 Jul 11 |
| Linking Social Cognition to Learning and Memory. | Leblanc H, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 33177112 | J Neurosci | 2020 Nov 11 |
| Social reactivation of fear engrams enhances memory recall. | Finkelstein AB, Leblanc H, Cole RH, Gallerani T, Vieira A, Zaki Y, Ramirez S | Proceedings of the National Academy of Sciences of the United States of America | 35286206 | Proc Natl Acad Sci U S A | 2022 Mar 22 |
| Hippocampal Engrams Generate Variable Behavioral Responses and Brain-Wide Network States. | Dorst KE, Senne RA, Diep AH, de Boer AR, Suthard RL, Leblanc H, Ruesch EA, Pyo AY, Skelton S, Carstensen LC, Malmberg S, McKissick OP, Bladon JH, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 38050098 | J Neurosci | 2024 Jan 10 |
| Basolateral Amygdala Astrocytes Are Engaged by the Acquisition and Expression of a Contextual Fear Memory. | Suthard RL, Senne RA, Buzharsky MD, Pyo AY, Dorst KE, Diep AH, Cole RH, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 37268419 | J Neurosci | 2023 Jul 5 |
| Erasable Hippocampal Neural Signatures Predict Memory Discrimination. | Kinsky NR, Orlin DJ, Ruesch EA, Kim B, Coello S, Diba K, Ramirez S | bioRxiv : the preprint server for biology | 36778486 | bioRxiv | 2024 Dec 19 |
| Hippocampal cells segregate positive and negative engrams. | Shpokayte M, McKissick O, Guan X, Yuan B, Rahsepar B, Fernandez FR, Ruesch E, Grella SL, White JA, Liu XS, Ramirez S | Communications biology | 36163262 | Commun Biol | 2022 Sep 26 |
| Theta-phase-specific modulation of dentate gyrus memory neurons. | Rahsepar B, Norman JF, Noueihed J, Lahner B, Quick MH, Ghaemi K, Pandya A, Fernandez FR, Ramirez S, White JA | eLife | 37401757 | Elife | 2023 Jul 4 |
| Prelimbic cortex ensembles promote appetitive learning-associated behavior. | Surets M, Caban-Murillo A, Ramirez S | Learning & memory (Cold Spring Harbor, N.Y.) | 38408863 | Learn Mem | 2024 Jan-Feb |
| Social behavior in mice following chronic optogenetic stimulation of hippocampal engrams. | Doucette E, Merfeld E, Leblanc H, Monasterio A, Cincotta C, Grella SL, Logan J, Ramirez S | Neurobiology of learning and memory | 33164892 | Neurobiol Learn Mem | 2020 Dec |
| From Engrams to Pathologies of the Brain. | Denny CA, Lebois E, Ramirez S | Frontiers in neural circuits | 28439228 | Front Neural Circuits | 2017 |
| Route-dependent spatial engram tagging in mouse dentate gyrus. | Wilmerding LK, Kondratyev I, Ramirez S, Hasselmo ME | Neurobiology of learning and memory | 36822466 | Neurobiol Learn Mem | 2023 Apr |
| Reactivating hippocampal-mediated memories during reconsolidation to disrupt fear. | Grella SL, Fortin AH, Ruesch E, Bladon JH, Reynolds LF, Gross A, Shpokayte M, Cincotta C, Zaki Y, Ramirez S | Nature communications | 36096993 | Nat Commun | 2022 Sep 12 |
| Hippocampus and amygdala fear memory engrams re-emerge after contextual fear relapse. | Zaki Y, Mau W, Cincotta C, Monasterio A, Odom E, Doucette E, Grella SL, Merfeld E, Shpokayte M, Ramirez S | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 35941286 | Neuropsychopharmacology | 2022 Oct |
| Rescuing Troves of Hidden Ecological Data to Tackle Emerging Mosquito-Borne Diseases. | Rund SSC, Moise IK, Beier JC, Martinez ME | Journal of the American Mosquito Control Association | 31442186 | J Am Mosq Control Assoc | 2019 Mar |
| Circadian Rhythms in Environmental Health Sciences. | Leung JM, Martinez ME | Current environmental health reports | 32662059 | Curr Environ Health Rep | 2020 Sep |
| Cellular and transcriptional diversity over the course of human lactation. | Nyquist SK, Gao P, Haining TKJ, Retchin MR, Golan Y, Drake RS, Kolb K, Mead BE, Ahituv N, Martinez ME, Shalek AK, Berger B, Goods BA | Proceedings of the National Academy of Sciences of the United States of America | 35377806 | Proc Natl Acad Sci U S A | 2022 Apr 12 |
| The calendar of epidemics: Seasonal cycles of infectious diseases. | Martinez ME | PLoS pathogens | 30408114 | PLoS Pathog | 2018 Nov |
| Socioeconomic Disparities in Subway Use and COVID-19 Outcomes in New York City. | Sy KTL, Martinez ME, Rader B, White LF | American journal of epidemiology | 33372209 | Am J Epidemiol | 2021 Jul 1 |
| Socioeconomic disparities in subway use and COVID-19 outcomes in New York City. | Sy KTL, Martinez ME, Rader B, White LF | medRxiv : the preprint server for health sciences | 32511568 | medRxiv | 2020 May 30 |
| Social-distancing fatigue: Evidence from real-time crowd-sourced traffic data. | Shearston JA, Martinez ME, Nunez Y, Hilpert M | The Science of the total environment | 34153749 | Sci Total Environ | 2021 Oct 20 |
| Guidelines for Modeling and Reporting Health Effects of Climate Change Mitigation Actions. | Hess JJ, Ranadive N, Boyer C, Aleksandrowicz L, Anenberg SC, Aunan K, Belesova K, Bell ML, Bickersteth S, Bowen K, Burden M, Campbell-Lendrum D, Carlton E, Cissé G, Cohen F, Dai H, Dangour AD, Dasgupta P, Frumkin H, Gong P, Gould RJ, Haines A, Hales S, Hamilton I, Hasegawa T, Hashizume M, Honda Y, Horton DE, Karambelas A, Kim H, Kim SE, Kinney PL, Kone I, Knowlton K, Lelieveld J, Limaye VS, Liu Q, Madaniyazi L, Martinez ME, Mauzerall DL, Milner J, Neville T, Nieuwenhuijsen M, Pachauri S, Perera F, Pineo H, Remais JV, Saari RK, Sampedro J, Scheelbeek P, Schwartz J, Shindell D, Shyamsundar P, Taylor TJ, Tonne C, Van Vuuren D, Wang C, Watts N, West JJ, Wilkinson P, Wood SA, Woodcock J, Woodward A, Xie Y, Zhang Y, Ebi KL | Environmental health perspectives | 33170741 | Environ Health Perspect | 2020 Nov |
| Identifying optimal vaccination scenarios to reduce varicella zoster virus transmission and reactivation. | Bakker KM, Eisenberg MC, Woods RJ, Martinez ME | BMC medicine | 36209074 | BMC Med | 2022 Oct 8 |
| Daylight saving time and circadian rhythms in the neuro-endocrine-immune system: impact on cardiovascular health. | Tarquini R, Carbone A, Martinez M, Mazzoccoli G | Internal and emergency medicine | 30488154 | Intern Emerg Med | 2019 Jan |
| Drivers of Infectious Disease Seasonality: Potential Implications for COVID-19. | Kronfeld-Schor N, Stevenson TJ, Nickbakhsh S, Schernhammer ES, Dopico XC, Dayan T, Martinez M, Helm B | Journal of biological rhythms | 33491541 | J Biol Rhythms | 2021 Feb |
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| Thinking outside the blood: Perspectives on tissue-resident Trypanosoma brucei. | Crilly NP, Mugnier MR | PLoS pathogens | 34529724 | PLoS Pathog | 2021 Sep |
| DNA damage drives antigen diversification through mosaic Variant Surface Glycoprotein (VSG) formation in Trypanosoma brucei. | Smith JE, Wang KJ, Kennedy EM, Hakim JMC, So J, Beaver AK, Magesh A, Gilligan-Steinberg SD, Zheng J, Zhang B, Moorthy DN, Akin EH, Mwakibete L, Mugnier MR | bioRxiv : the preprint server for biology | 39253459 | bioRxiv | 2024 Aug 30 |
| Cigar Sales in Convenience Stores in the US, 2009-2020. | Delnevo CD, Miller Lo E, Giovenco DP, Cornacchione Ross J, Hrywna M, Strasser AA | JAMA | 34932088 | JAMA | 2021 Dec 21 |
| Cross-promotion of nicotine pouches by leading cigarette brands. | Talbot EM, Giovenco DP, Grana R, Hrywna M, Ganz O | Tobacco control | 34670870 | Tob Control | 2023 Jul |
| Evaluating the impact and equity of a tobacco-free pharmacy law on retailer density in New York City neighbourhoods. | Giovenco DP, Spillane TE, Mauro CM, Hernández D | Tobacco control | 30135112 | Tob Control | 2019 Sep |
| Demographic and psychological moderators of the relationship between neighborhood cigarette advertising and current smoking in New York City. | Giovenco DP, Spillane TE, Baig SA, Dumas SE, Dongchung TY, Sanderson M, Sisti JS, Farley SM, Jasek JP, Seligson AL | Health & place | 32947186 | Health Place | 2020 Nov |
| IQOS print magazine advertising characteristics and reach before and after FDA authorisation as a modified risk tobacco product. | Ganz O, Strasser AA, Giovenco DP, Audrain-McGovern J, Cappella JN, Safi Z, Tan ASL, Talbot EM, Delnevo CD | Tobacco control | 36958825 | Tob Control | 2024 Sep 25 |
| Impact of menthol capsule cigarettes on menthol and non-menthol cigarette consumption in the USA, 2008-2020. | Delnevo CD, Giovenco DP, Villanti AC | Tobacco control | 35537814 | Tob Control | 2023 Nov |
| Characteristics of storefront tobacco advertisements and differences by product type: A content analysis of retailers in New York City, USA. | Giovenco DP, Spillane TE, Wong BA, Wackowski OA | Preventive medicine | 30930262 | Prev Med | 2019 Jun |
| Content analysis of instagram posts by leading cannabis vaporizer brands. | Spillane TE, Wong BA, Giovenco DP | Drug and alcohol dependence | 33109462 | Drug Alcohol Depend | 2021 Jan 1 |
| Blowing the lid off: an analysis of interior cigarette pack features and marketing strategies. | Giovenco DP, Spillane TE, Lewis MJ | Tobacco control | 32675249 | Tob Control | 2021 Sep |
| Packaging Characteristics of Top-Selling Cigars in the United States, 2018. | Giovenco DP, Spillane TE, Talbot E, Wackowski OA, Audrain-McGovern J, Ganz O, Delnevo CD | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 35287167 | Nicotine Tob Res | 2022 Oct 17 |
| Smoke Shop Misclassification May Cloud Studies on Vape Shop Density. | Giovenco DP | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 28605478 | Nicotine Tob Res | 2018 Jul 9 |
| Changes in the availability and promotion of non-cigarette tobacco products near high schools in New Jersey, USA. | Giovenco DP, Ackerman C, Hrywna M, Delnevo CD | Tobacco control | 28798262 | Tob Control | 2018 Sep |
| Different Smokes for Different Folks? E-Cigarettes and Tobacco Disparities. | Giovenco DP | American journal of public health | 31390250 | Am J Public Health | 2019 Sep |
| Improving Efficiency in Mobile Data Collection for Place-Based Public Health Research. | Giovenco DP, Spillane TE | American journal of public health | 30785801 | Am J Public Health | 2019 Feb |
| Prevalence of population smoking cessation by electronic cigarette use status in a national sample of recent smokers. | Giovenco DP, Delnevo CD | Addictive behaviors | 28802179 | Addict Behav | 2018 Jan |
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| Behavioral heterogeneity among cigarette and e-cigarette dual-users and associations with future tobacco use: Findings from the Population Assessment of Tobacco and Health Study. | Baig SA, Giovenco DP | Addictive behaviors | 32028096 | Addict Behav | 2020 May |
| Medical cannabis laws and medical and non-medical prescription stimulant use among a nationally representative sample of US Adults: Examining the role of sexual identity and gender. | Philbin MM, Mauro PM, Greene ER, LaBossier NJ, Giovenco DP, Martins SS | The International journal on drug policy | 32717704 | Int J Drug Policy | 2020 Oct |
| Multi-level drivers of tobacco use and purchasing behaviors during COVID-19 "lockdown": A qualitative study in the United States. | Giovenco DP, Spillane TE, Maggi RM, Lee EY, Philbin MM | The International journal on drug policy | 33662811 | Int J Drug Policy | 2021 Aug |
| Natural American Spirit launches 'Sky', the brand's first commercial organic cigarette with a charcoal filter. | Pearson J, Giovenco DP, Lewis MJ, Moran M, Ganz O | Tobacco control | 34593613 | Tob Control | 2023 May |
| Commentary on Weinberger et al.: Tobacco and cannabis policies as drivers of nicotine and cannabis co-use - research and measurement implications to move the field forward. | Philbin MM, Giovenco DP, Mauro PM | Addiction (Abingdon, England) | 35362234 | Addiction | 2022 Jun |
| Changes in Pack Features Among Top-Selling Cigarettes in the U.S., 2018 and 2021. | Giovenco DP, Ganz O, Spillane TE, Easter AG, Wackowski OA, Villanti AC, Strasser AA, Delnevo CD | American journal of preventive medicine | 37295659 | Am J Prev Med | 2023 Dec |
| Camel Crush pack inserts cross-promote Vuse menthol e-cigarettes ahead of impending menthol cigarette ban. | Giovenco DP, Ganz O, Chen-Sankey J, Delnevo CD | Tobacco control | 37702704 | Tob Control | 2024 Sep 25 |
| Is nicotine vaping associated with subsequent initiation of cannabis or other substances from adolescence into young adulthood? | Perlmutter AS, Keyes KM, Giovenco D, Martins SS, Rudolph KE | American journal of epidemiology | 38988255 | Am J Epidemiol | 2024 Jul 10 |
| Assessment of Menthol and Nonmenthol Cigarette Consumption in the US, 2000 to 2018. | Delnevo CD, Giovenco DP, Villanti AC | JAMA network open | 32766798 | JAMA Netw Open | 2020 Aug 3 |
| Neighborhood Differences in Alternative Tobacco Product Availability and Advertising in New York City: Implications for Health Disparities. | Giovenco DP, Spillane TE, Merizier JM | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 30452712 | Nicotine Tob Res | 2019 Jun 21 |
| Predictive Validity of Tobacco Product Advertising and Retail Availability. | Giovenco DP, Spillane TE, Delnevo CD | Tobacco regulatory science | 31824986 | Tob Regul Sci | 2019 Sep |
| White Owl launches sweepstakes to promote new dessert-flavoured cigar. | Safi Z, Ganz O, Giovenco DP, Delnevo C, Lewis MJ | Tobacco control | 34031226 | Tob Control | 2022 Sep |
| Cigarillo sales in legalized marijuana markets in the U.S. | Giovenco DP, Spillane TE, Mauro CM, Martins SS | Drug and alcohol dependence | 29500953 | Drug Alcohol Depend | 2018 Apr 1 |
| Internalizing problems are associated with initiation and past 30-Day use of flavored tobacco products. | Ganz O, Cohn AM, Goodwin RD, Giovenco DP, Wackowski OA, Talbot EM, Delnevo CD | Addictive behaviors | 34763300 | Addict Behav | 2022 Feb |
| Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy. | Hartmann FJ, Babdor J, Gherardini PF, Amir ED, Jones K, Sahaf B, Marquez DM, Krutzik P, O'Donnell E, Sigal N, Maecker HT, Meyer E, Spitzer MH, Bendall SC | Cell reports | 31315057 | Cell Rep | 2019 Jul 16 |
| Engineered Tumor-Targeted T Cells Mediate Enhanced Anti-Tumor Efficacy Both Directly and through Activation of the Endogenous Immune System. | Avanzi MP, Yeku O, Li X, Wijewarnasuriya DP, van Leeuwen DG, Cheung K, Park H, Purdon TJ, Daniyan AF, Spitzer MH, Brentjens RJ | Cell reports | 29768210 | Cell Rep | 2018 May 15 |
| Pre-existing immune status associated with response to combination of sipuleucel-T and ipilimumab in patients with metastatic castration-resistant prostate cancer. | Sinha M, Zhang L, Subudhi S, Chen B, Marquez J, Liu EV, Allaire K, Cheung A, Ng S, Nguyen C, Friedlander TW, Aggarwal R, Spitzer M, Allison JP, Small EJ, Sharma P, Fong L | Journal for immunotherapy of cancer | 33986125 | J Immunother Cancer | 2021 May |
| SCITO-seq: single-cell combinatorial indexed cytometry sequencing. | Hwang B, Lee DS, Tamaki W, Sun Y, Ogorodnikov A, Hartoularos GC, Winters A, Yeung BZ, Nazor KL, Song YS, Chow ED, Spitzer MH, Ye CJ | Nature methods | 34354295 | Nat Methods | 2021 Aug |
| A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites. | Dodd D, Spitzer MH, Van Treuren W, Merrill BD, Hryckowian AJ, Higginbottom SK, Le A, Cowan TM, Nolan GP, Fischbach MA, Sonnenburg JL | Nature | 29168502 | Nature | 2017 Nov 30 |
| Autocrine TGFβ Is a Survival Factor for Monocytes and Drives Immunosuppressive Lineage Commitment. | Gonzalez-Junca A, Driscoll KE, Pellicciotta I, Du S, Lo CH, Roy R, Parry R, Tenvooren I, Marquez DM, Spitzer MH, Barcellos-Hoff MH | Cancer immunology research | 30538091 | Cancer Immunol Res | 2019 Feb |
| Functional CRISPR dissection of gene networks controlling human regulatory T cell identity. | Schumann K, Raju SS, Lauber M, Kolb S, Shifrut E, Cortez JT, Skartsis N, Nguyen VQ, Woo JM, Roth TL, Yu R, Nguyen MLT, Simeonov DR, Nguyen DN, Targ S, Gate RE, Tang Q, Bluestone JA, Spitzer MH, Ye CJ, Marson A | Nature immunology | 32989329 | Nat Immunol | 2020 Nov |
| Dynamic CD8(+) T cell responses to cancer immunotherapy in human regional lymph nodes are disrupted in metastatic lymph nodes. | Rahim MK, Okholm TLH, Jones KB, McCarthy EE, Liu CC, Yee JL, Tamaki SJ, Marquez DM, Tenvooren I, Wai K, Cheung A, Davidson BR, Johri V, Samad B, O'Gorman WE, Krummel MF, van Zante A, Combes AJ, Angelo M, Fong L, Algazi AP, Ha P, Spitzer MH | Cell | 36931243 | Cell | 2023 Mar 16 |
| ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network. | Atallah MB, Tandon V, Hiam KJ, Boyce H, Hori M, Atallah W, Spitzer MH, Engleman E, Mallick P | BMC bioinformatics | 32778050 | BMC Bioinformatics | 2020 Aug 10 |
| Systemic Immunity Is Required for Effective Cancer Immunotherapy. | Spitzer MH, Carmi Y, Reticker-Flynn NE, Kwek SS, Madhireddy D, Martins MM, Gherardini PF, Prestwood TR, Chabon J, Bendall SC, Fong L, Nolan GP, Engleman EG | Cell | 28111070 | Cell | 2017 Jan 26 |
| Cellular architecture of human brain metastases. | Gonzalez H, Mei W, Robles I, Hagerling C, Allen BM, Hauge Okholm TL, Nanjaraj A, Verbeek T, Kalavacherla S, van Gogh M, Georgiou S, Daras M, Phillips JJ, Spitzer MH, Roose JP, Werb Z | Cell | 35063085 | Cell | 2022 Feb 17 |
| T Cells Instruct Immune Checkpoint Inhibitor Therapy Resistance in Tumors Responsive to IL1 and TNFα Inflammation. | Cho NW, Guldberg SM, Nabet BY, Yu JZ, Kim EJ, Hiam-Galvez KJ, Yee JL, DeBarge R, Tenvooren I, Ashitey NA, Lynce F, Dillon DA, Rosenbluth JM, Spitzer MH | Cancer immunology research | 39404741 | Cancer Immunol Res | 2025 Feb 3 |
| Depletion of microbiome-derived molecules in the host using Clostridium genetics. | Guo CJ, Allen BM, Hiam KJ, Dodd D, Van Treuren W, Higginbottom S, Nagashima K, Fischer CR, Sonnenburg JL, Spitzer MH, Fischbach MA | Science (New York, N.Y.) | 31831639 | Science | 2019 Dec 13 |
| Scalable Conjugation and Characterization of Immunoglobulins with Stable Mass Isotope Reporters for Single-Cell Mass Cytometry Analysis. | Hartmann FJ, Simonds EF, Vivanco N, Bruce T, Borges L, Nolan GP, Spitzer MH, Bendall SC | Methods in molecular biology (Clifton, N.J.) | 31077099 | Methods Mol Biol | 2019 |
| Systemic dysfunction and plasticity of the immune macroenvironment in cancer models. | Allen BM, Hiam KJ, Burnett CE, Venida A, DeBarge R, Tenvooren I, Marquez DM, Cho NW, Carmi Y, Spitzer MH | Nature medicine | 32451499 | Nat Med | 2020 Jul |
| A Comprehensive Atlas of Immunological Differences Between Humans, Mice, and Non-Human Primates. | Bjornson-Hooper ZB, Fragiadakis GK, Spitzer MH, Chen H, Madhireddy D, Hu K, Lundsten K, McIlwain DR, Nolan GP | Frontiers in immunology | 35359965 | Front Immunol | 2022 |
| Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types. | Fragiadakis GK, Bjornson-Hooper ZB, Madhireddy D, Sachs K, Chen H, McIlwain DR, Spitzer MH, Bendall SC, Nolan GP | Frontiers in immunology | 35419006 | Front Immunol | 2022 |
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| Single-cell analysis by mass cytometry reveals metabolic states of early-activated CD8(+) T cells during the primary immune response. | Levine LS, Hiam-Galvez KJ, Marquez DM, Tenvooren I, Madden MZ, Contreras DC, Dahunsi DO, Irish JM, Oluwole OO, Rathmell JC, Spitzer MH | Immunity | 33705706 | Immunity | 2021 Apr 13 |
| A cytotoxic-skewed immune set point predicts low neutralizing antibody levels after Zika virus infection. | McCarthy EE, Odorizzi PM, Lutz E, Smullin CP, Tenvooren I, Stone M, Simmons G, Hunt PW, Feeney ME, Norris PJ, Busch MP, Spitzer MH, Rutishauser RL | Cell reports | 35584677 | Cell Rep | 2022 May 17 |
| Selective G protein signaling driven by substance P-neurokinin receptor dynamics. | Harris JA, Faust B, Gondin AB, Dämgen MA, Suomivuori CM, Veldhuis NA, Cheng Y, Dror RO, Thal DM, Manglik A | Nature chemical biology | 34711980 | Nat Chem Biol | 2022 Jan |
| Hedgehog pathway activation through nanobody-mediated conformational blockade of the Patched sterol conduit. | Zhang Y, Lu WJ, Bulkley DP, Liang J, Ralko A, Han S, Roberts KJ, Li A, Cho W, Cheng Y, Manglik A, Beachy PA | Proceedings of the National Academy of Sciences of the United States of America | 33139559 | Proc Natl Acad Sci U S A | 2020 Nov 17 |
| Agonist-selective recruitment of engineered protein probes and of GRK2 by opioid receptors in living cells. | Stoeber M, Jullié D, Li J, Chakraborty S, Majumdar S, Lambert NA, Manglik A, von Zastrow M | eLife | 32096468 | Elife | 2020 Feb 25 |
| An ultra-potent synthetic nanobody neutralizes SARS-CoV-2 by locking Spike into an inactive conformation. | Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, García-Sastre A, Ott M, Vignuzzi M, QCRG Structural Biology Consortium, Walter P, Manglik A | bioRxiv : the preprint server for biology | 32817938 | bioRxiv | 2020 Aug 17 |
| Structural Basis for G Protein-Coupled Receptor Activation. | Manglik A, Kruse AC | Biochemistry | 28967738 | Biochemistry | 2017 Oct 24 |
| Smoothened stimulation by membrane sterols drives Hedgehog pathway activity. | Deshpande I, Liang J, Hedeen D, Roberts KJ, Zhang Y, Ha B, Latorraca NR, Faust B, Dror RO, Beachy PA, Myers BR, Manglik A | Nature | 31263273 | Nature | 2019 Jul |
| Molecular Basis of Opioid Action: From Structures to New Leads. | Manglik A | Biological psychiatry | 31653480 | Biol Psychiatry | 2020 Jan 1 |
| Autoantibody mimicry of hormone action at the thyrotropin receptor. | Faust B, Billesbølle CB, Suomivuori CM, Singh I, Zhang K, Hoppe N, Pinto AFM, Diedrich JK, Muftuoglu Y, Szkudlinski MW, Saghatelian A, Dror RO, Cheng Y, Manglik A | Nature | 35940205 | Nature | 2022 Sep |
| Discrete GPCR-triggered endocytic modes enable β-arrestins to flexibly regulate cell signaling. | Barsi-Rhyne B, Manglik A, von Zastrow M | eLife | 36250629 | Elife | 2022 Oct 17 |
| Structure of hepcidin-bound ferroportin reveals iron homeostatic mechanisms. | Billesbølle CB, Azumaya CM, Kretsch RC, Powers AS, Gonen S, Schneider S, Arvedson T, Dror RO, Cheng Y, Manglik A | Nature | 32814342 | Nature | 2020 Oct |
| Protein design and variant prediction using autoregressive generative models. | Shin JE, Riesselman AJ, Kollasch AW, McMahon C, Simon E, Sander C, Manglik A, Kruse AC, Marks DS | Nature communications | 33893299 | Nat Commun | 2021 Apr 23 |
| An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike. | Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, García-Sastre A, Ott M, Vignuzzi M, QCRG Structural Biology Consortium, Walter P, Manglik A | Science (New York, N.Y.) | 33154106 | Science | 2020 Dec 18 |
| Biochemical Assays to Directly Assess Smoothened Activation by a Conformationally Sensitive Nanobody. | Deshpande I, Manglik A | Methods in molecular biology (Clifton, N.J.) | 34562250 | Methods Mol Biol | 2022 |
| Assessing an Internet-Delivered, Emotion-Focused Intervention Compared With a Healthy Lifestyle Active Control Intervention in Improving Mental Health in Cancer Survivors: Protocol for a Randomized Controlled Trial. | Smith IS, Wallace R, Wellecke C, Bind MA, Weihs KL, Bei B, Wiley JF | JMIR research protocols | 35896021 | JMIR Res Protoc | 2022 Jul 27 |
| Editor's Highlight: Modifying Role of Endothelial Function Gene Variants on the Association of Long-Term PM2.5 Exposure With Blood DNA Methylation Age: The VA Normative Aging Study. | Nwanaji-Enwerem JC, Bind MA, Dai L, Oulhote Y, Colicino E, Di Q, Just AC, Hou L, Vokonas P, Coull BA, Weisskopf MG, Baccarelli AA, Schwartz JD | Toxicological sciences : an official journal of the Society of Toxicology | 28486674 | Toxicol Sci | 2017 Jul 1 |
| Synthesis of Harvard Environmental Protection Agency (EPA) Center studies on traffic-related particulate pollution and cardiovascular outcomes in the Greater Boston Area. | Jhun I, Kim J, Cho B, Gold DR, Schwartz J, Coull BA, Zanobetti A, Rice MB, Mittleman MA, Garshick E, Vokonas P, Bind MA, Wilker EH, Dominici F, Suh H, Koutrakis P | Journal of the Air & Waste Management Association (1995) | 30888266 | J Air Waste Manag Assoc | 2019 Aug |
| Randomization-based inference for Bernoulli trial experiments and implications for observational studies. | Branson Z, Bind MA | Statistical methods in medical research | 29451089 | Stat Methods Med Res | 2019 May |
| When possible, report a Fisher-exact P value and display its underlying null randomization distribution. | Bind MC, Rubin DB | Proceedings of the National Academy of Sciences of the United States of America | 32703808 | Proc Natl Acad Sci U S A | 2020 Aug 11 |
| Effect modification of ambient particle mortality by radon: A time series analysis in 108 U.S. cities. | Blomberg AJ, Coull BA, Jhun I, Vieira CLZ, Zanobetti A, Garshick E, Schwartz J, Koutrakis P | Journal of the Air & Waste Management Association (1995) | 30230977 | J Air Waste Manag Assoc | 2019 Mar |
| The impact of outdoor air pollution on COVID-19: a review of evidence from in vitro, animal, and human studies. | Bourdrel T, Annesi-Maesano I, Alahmad B, Maesano CN, Bind MA | European respiratory review : an official journal of the European Respiratory Society | 33568525 | Eur Respir Rev | 2021 Mar 31 |
| Larval zebrafish as an in vitro model for evaluating toxicological effects of mycotoxins. | Juan-García A, Bind MA, Engert F | Ecotoxicology and environmental safety | 32800244 | Ecotoxicol Environ Saf | 2020 Oct 1 |
| Targeting emotional regulation using an Internet-delivered psychological intervention for cancer survivors: A randomized controlled trial. | Smith IS, Bind MA, Weihs KL, Bei B, Wiley JF | British journal of health psychology | 37437963 | Br J Health Psychol | 2023 Nov |
| Causal Modeling in Environmental Health. | Bind MA | Annual review of public health | 30633715 | Annu Rev Public Health | 2019 Apr 1 |
| Quantile causal mediation analysis allowing longitudinal data. | Bind MA, VanderWeele TJ, Schwartz JD, Coull BA | Statistics in medicine | 28786129 | Stat Med | 2017 Nov 20 |
| Racial and Ethnic Disparities in Early Childhood Obesity. | Isong IA, Rao SR, Bind MA, Avendaño M, Kawachi I, Richmond TK | Pediatrics | 29269386 | Pediatrics | 2018 Jan |
| Ozone, NO(2) and PM(10) are associated with the occurrence of multiple sclerosis relapses. Evidence from seasonal multi-pollutant analyses. | Jeanjean M, Bind MA, Roux J, Ongagna JC, de Sèze J, Bard D, Leray E | Environmental research | 29426027 | Environ Res | 2018 May |
| Comparing apples to apples: an environmental criminology analysis of the effects of heat and rain on violent crimes in Boston. | Sommer AJ, Lee M, Bind MC | Palgrave communications | 31360534 | Palgrave Commun | 2018 |
| Serum vaccine antibody concentrations in adults exposed to per- and polyfluoroalkyl substances: A birth cohort in the Faroe Islands. | Shih YH, Blomberg AJ, Bind MA, Holm D, Nielsen F, Heilmann C, Weihe P, Grandjean P | Journal of immunotoxicology | 34143710 | J Immunotoxicol | 2021 Dec |
| Cardiovascular effects of air pollution. | Bourdrel T, Bind MA, Béjot Y, Morel O, Argacha JF | Archives of cardiovascular diseases | 28735838 | Arch Cardiovasc Dis | 2017 Nov |
| Ecology of the cardiovascular system: Part II - A focus on non-air related pollutants. | Argacha JF, Mizukami T, Bourdrel T, Bind MA | Trends in cardiovascular medicine | 30224235 | Trends Cardiovasc Med | 2019 Jul |
| Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts. | Sturm G, Cardenas A, Bind MA, Horvath S, Wang S, Wang Y, Hägg S, Hirano M, Picard M | Epigenetics | 31156022 | Epigenetics | 2019 Oct |
| County-level radon exposure and all-cause mortality risk among Medicare beneficiaries. | Yitshak-Sade M, Blomberg AJ, Zanobetti A, Schwartz JD, Coull BA, Kloog I, Dominici F, Koutrakis P | Environment international | 31200153 | Environ Int | 2019 Sep |
| An educational intervention on HPV knowledge and comfortability discussing vaccination among oral health care professionals of the American Indian and Alaskan Native population. | Salous MH, Bind MA, Granger L, Johnson LB, Welch K, Villa A | Human vaccines & immunotherapeutics | 32401662 | Hum Vaccin Immunother | 2020 Dec 1 |
| The Role of Ambient Particle Radioactivity in Inflammation and Endothelial Function in an Elderly Cohort. | Blomberg AJ, Nyhan MM, Bind MA, Vokonas P, Coull BA, Schwartz J, Koutrakis P | Epidemiology (Cambridge, Mass.) | 32282436 | Epidemiology | 2020 Jul |
| Educational Interventions on Human Papillomavirus for Oral Health Providers. | Pampena E, Vanucci R, Johnson LB, Bind MA, Tamayo I, Welch K, Lind E, Wagner R, Villa A | Journal of cancer education : the official journal of the American Association for Cancer Education | 30868480 | J Cancer Educ | 2020 Aug |
| Controlled human exposures to diesel exhaust: a human epigenome-wide experiment of target bronchial epithelial cells. | Cardenas A, Fadadu RP, Van Der Laan L, Ward-Caviness C, Granger L, Diaz-Sanchez D, Devlin RB, Bind MA | Environmental epigenetics | 33859829 | Environ Epigenet | 2021 |
| A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota. | Sommer AJ, Peters A, Rommel M, Cyrys J, Grallert H, Haller D, Müller CL, Bind MC | PLoS computational biology | 35533202 | PLoS Comput Biol | 2022 May |
| Heterogeneous ozone effects on the DNA methylome of bronchial cells observed in a crossover study. | Bind MC, Rubin DB, Cardenas A, Dhingra R, Ward-Caviness C, Liu Z, Mirowsky J, Schwartz JD, Diaz-Sanchez D, Devlin RB | Scientific reports | 32978449 | Sci Rep | 2020 Sep 25 |
| The role of family history of Cancer in Oral Cavity Cancer. | Fantozzi PJ, Bavarian R, Tamayo I, Bind MA, Woo SB, Villa A | Head & face medicine | 34809651 | Head Face Med | 2021 Nov 22 |
| Bronchial cell epigenetic aging in a human experimental study of short-term diesel and ozone exposures. | Nwanaji-Enwerem JC, Bozack AK, Ward-Caviness C, Diaz-Sanchez D, Devlin RB, Bind MC, Cardenas A | Environmental epigenetics | 39416749 | Environ Epigenet | 2024 |
| Estimating Causal Effects of Local Air Pollution on Daily Deaths: Effect of Low Levels. | Schwartz J, Bind MA, Koutrakis P | Environmental health perspectives | 27203595 | Environ Health Perspect | 2017 Jan |
| The role of body mass index at diagnosis of colorectal cancer on Black-White disparities in survival: a density regression mediation approach. | Devick KL, Valeri L, Chen J, Jara A, Bind MA, Coull BA | Biostatistics (Oxford, England) | 32968805 | Biostatistics | 2022 Apr 13 |
| Joint and independent neurotoxic effects of early life exposures to a chemical mixture: A multi-pollutant approach combining ensemble learning and g-computation. | Oulhote Y, Coull B, Bind MA, Debes F, Nielsen F, Tamayo I, Weihe P, Grandjean P | Environmental epidemiology (Philadelphia, Pa.) | 32051926 | Environ Epidemiol | 2019 Oct |
| Study of locomotion response and development in zebrafish (Danio rerio) embryos and larvae exposed to enniatin A, enniatin B, and beauvericin. | Juan-García A, Juan C, Bind MA, Engert F | The Science of the total environment | 33677298 | Sci Total Environ | 2021 Jul 10 |
| The importance of having a conceptual stage when reporting non-randomized studies. | Bind MC, Rubin DB | Biostatistics & epidemiology | 34368597 | Biostat Epidemiol | 2021 |
| Bridging observational studies and randomized experiments by embedding the former in the latter. | Bind MC, Rubin DB | Statistical methods in medical research | 29187059 | Stat Methods Med Res | 2019 Jul |
| Multiplatform molecular analyses refine classification of gliomas arising in patients with neurofibromatosis type 1. | Lucas CG, Sloan EA, Gupta R, Wu J, Pratt D, Vasudevan HN, Ravindranathan A, Barreto J, Williams EA, Shai A, Whipple NS, Bruggers CS, Maher O, Nabors B, Rodriguez M, Samuel D, Brown M, Carmichael J, Lu R, Mirchia K, Sullivan DV, Pekmezci M, Tihan T, Bollen AW, Perry A, Banerjee A, Mueller S, Gupta N, Hervey-Jumper SL, Oberheim Bush NA, Daras M, Taylor JW, Butowski NA, de Groot J, Clarke JL, Raleigh DR, Costello JF, Phillips JJ, Reddy AT, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 35945463 | Acta Neuropathol | 2022 Oct |
| Recurrent KBTBD4 small in-frame insertions and absence of DROSHA deletion or DICER1 mutation differentiate pineal parenchymal tumor of intermediate differentiation (PPTID) from pineoblastoma. | Lee JC, Mazor T, Lao R, Wan E, Diallo AB, Hill NS, Thangaraj N, Wendelsdorf K, Samuel D, Kline CN, Banerjee A, Auguste K, Raffel C, Gupta N, Berger M, Raleigh DR, Shai A, Phillips JJ, Bollen AW, Tihan T, Perry A, Costello J, Solomon DA | Acta neuropathologica | 30877433 | Acta Neuropathol | 2019 May |
| Myxoid glioneuronal tumor, PDGFRA p.K385-mutant: clinical, radiologic, and histopathologic features. | Lucas CG, Villanueva-Meyer JE, Whipple N, Oberheim Bush NA, Cooney T, Chang S, McDermott M, Berger M, Cham E, Sun PP, Putnam A, Zhou H, Bollo R, Cheshier S, Poppe MM, Fung KM, Sung S, Glenn C, Fan X, Bannykh S, Hu J, Danielpour M, Li R, Alva E, Johnston J, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Pekmezci M, Tihan T, Bollen AW, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31609499 | Brain Pathol | 2020 May |
| The genetic landscape of anaplastic pleomorphic xanthoastrocytoma. | Phillips JJ, Gong H, Chen K, Joseph NM, van Ziffle J, Bastian BC, Grenert JP, Kline CN, Mueller S, Banerjee A, Nicolaides T, Gupta N, Berger MS, Lee HS, Pekmezci M, Tihan T, Bollen AW, Perry A, Shieh JTC, Solomon DA | Brain pathology (Zurich, Switzerland) | 30051528 | Brain Pathol | 2019 Jan |
| Recurrent non-canonical histone H3 mutations in spinal cord diffuse gliomas. | Sloan EA, Cooney T, Oberheim Bush NA, Buerki R, Taylor J, Clarke JL, Torkildson J, Kline C, Reddy A, Mueller S, Banerjee A, Butowski N, Chang S, Mummaneni PV, Chou D, Tan L, Theodosopoulos P, McDermott M, Berger M, Raffel C, Gupta N, Sun PP, Li Y, Shah V, Cha S, Braunstein S, Raleigh DR, Samuel D, Scharnhorst D, Fata C, Guo H, Moes G, Kim JYH, Koschmann C, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Pekmezci M, Phillips JJ, Tihan T, Bollen AW, Perry A, Solomon DA | Acta neuropathologica | 31515627 | Acta Neuropathol | 2019 Nov |
| Gliomas arising in the setting of Li-Fraumeni syndrome stratify into two molecular subgroups with divergent clinicopathologic features. | Sloan EA, Hilz S, Gupta R, Cadwell C, Ramani B, Hofmann J, Kline CN, Banerjee A, Reddy A, Oberheim Bush NA, Chang S, Braunstein S, Chang EF, Raffel C, Gupta N, Sun PP, Kim JYH, Moes G, Alva E, Li R, Bruggers CS, Alashari M, Wetmore C, Garg S, Dishop M, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Phillips JJ, Pekmezci M, Tihan T, Bollen AW, Berger MS, Costello JF, Perry A, Solomon DA | Acta neuropathologica | 32157385 | Acta Neuropathol | 2020 May |
| Angiocentric glioma with MYB-QKI fusion located in the brainstem, rather than cerebral cortex. | Chan E, Bollen AW, Sirohi D, Van Ziffle J, Grenert JP, Kline CN, Tihan T, Perry A, Gupta N, Solomon DA | Acta neuropathologica | 28776091 | Acta Neuropathol | 2017 Oct |
| Multinodular and vacuolating neuronal tumor of the cerebrum is a clonal neoplasm defined by genetic alterations that activate the MAP kinase signaling pathway. | Pekmezci M, Stevers M, Phillips JJ, Van Ziffle J, Bastian BC, Tsankova NM, Kleinschmidt-DeMasters BK, Rosenblum MK, Tihan T, Perry A, Solomon DA | Acta neuropathologica | 29428973 | Acta Neuropathol | 2018 Mar |
| Well-differentiated papillary mesothelioma of the peritoneum is genetically defined by mutually exclusive mutations in TRAF7 and CDC42. | Stevers M, Rabban JT, Garg K, Van Ziffle J, Onodera C, Grenert JP, Yeh I, Bastian BC, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 30171198 | Mod Pathol | 2019 Jan |
| The genetic landscape of gliomas arising after therapeutic radiation. | López GY, Van Ziffle J, Onodera C, Grenert JP, Yeh I, Bastian BC, Clarke J, Oberheim Bush NA, Taylor J, Chang S, Butowski N, Banerjee A, Mueller S, Kline C, Torkildson J, Samuel D, Siongco A, Raffel C, Gupta N, Kunwar S, Mummaneni P, Aghi M, Theodosopoulos P, Berger M, Phillips JJ, Pekmezci M, Tihan T, Bollen AW, Perry A, Solomon DA | Acta neuropathologica | 30196423 | Acta Neuropathol | 2019 Jan |
| Complete durable response of a pediatric anaplastic oligodendroglioma to temozolomide alone: Case report and review of literature. | Sorge C, Li R, Singh S, Reddy AT, Solomon DA, Perry A, Friedman GK | Pediatric blood & cancer | 28696020 | Pediatr Blood Cancer | 2017 Dec |
| Primary intracranial sarcomas with DICER1 mutation often contain prominent eosinophilic cytoplasmic globules and can occur in the setting of neurofibromatosis type 1. | Lee JC, Villanueva-Meyer JE, Ferris SP, Sloan EA, Hofmann JW, Hattab EM, Williams BJ, Guo H, Torkildson J, Florez A, Van Ziffle J, Onodera C, Grenert JP, Cho SJ, Horvai AE, Jones DTW, Pfister SM, Koelsche C, von Deimling A, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 30649606 | Acta Neuropathol | 2019 Mar |
| Diffuse midline gliomas with subclonal H3F3A K27M mutation and mosaic H3.3 K27M mutant protein expression. | Lopez GY, Oberheim Bush NA, Phillips JJ, Bouffard JP, Moshel YA, Jaeckle K, Kleinschmidt-DeMasters BK, Rosenblum MK, Perry A, Solomon DA | Acta neuropathologica | 29063183 | Acta Neuropathol | 2017 Dec |
| Oligodendrogliomas, IDH-mutant and 1p/19q-codeleted, arising during teenage years often lack TERT promoter mutation that is typical of their adult counterparts. | Lee J, Putnam AR, Chesier SH, Banerjee A, Raffel C, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Perry A, Solomon DA | Acta neuropathologica communications | 30231927 | Acta Neuropathol Commun | 2018 Sep 19 |
| Genetic confirmation that ependymoma can arise as part of multiple endocrine neoplasia type 1 (MEN1) syndrome. | Cuevas-Ocampo AK, Bollen AW, Goode B, Pajtler KW, Chavez L, Sharma T, Dai SC, McDermott M, Perry A, Korshunov A, Solomon DA | Acta neuropathologica | 28238068 | Acta Neuropathol | 2017 Apr |
| Targeted next-generation sequencing of pediatric neuro-oncology patients improves diagnosis, identifies pathogenic germline mutations, and directs targeted therapy. | Kline CN, Joseph NM, Grenert JP, van Ziffle J, Talevich E, Onodera C, Aboian M, Cha S, Raleigh DR, Braunstein S, Torkildson J, Samuel D, Bloomer M, Campomanes AGA, Banerjee A, Butowski N, Raffel C, Tihan T, Bollen AW, Phillips JJ, Korn WM, Yeh I, Bastian BC, Gupta N, Mueller S, Perry A, Nicolaides T, Solomon DA | Neuro-oncology | 28453743 | Neuro Oncol | 2017 May 1 |
| Deep sequencing of WNT-activated medulloblastomas reveals secondary SHH pathway activation. | Iorgulescu JB, Van Ziffle J, Stevers M, Grenert JP, Bastian BC, Chavez L, Stichel D, Buchhalter I, Samuel D, Nicolaides T, Banerjee A, Mueller S, Gupta N, Tihan T, Bollen AW, Northcott PA, Kool M, Pfister S, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 29435664 | Acta Neuropathol | 2018 Apr |
| Exploiting molecular biology for diagnosis and targeted management of pediatric low-grade gliomas. | Garcia MA, Solomon DA, Haas-Kogan DA | Future oncology (London, England) | 27072750 | Future Oncol | 2016 Jun |
| Diffuse Midline Gliomas with Histone H3-K27M Mutation: A Series of 47 Cases Assessing the Spectrum of Morphologic Variation and Associated Genetic Alterations. | Solomon DA, Wood MD, Tihan T, Bollen AW, Gupta N, Phillips JJ, Perry A | Brain pathology (Zurich, Switzerland) | 26517431 | Brain Pathol | 2016 Sep |
| Loss of H3K27 trimethylation by immunohistochemistry is frequent in oligodendroglioma, IDH-mutant and 1p/19q-codeleted, but is neither a sensitive nor a specific marker. | Pekmezci M, Phillips JJ, Dirilenoglu F, Atasever-Rezanko T, Tihan T, Solomon D, Bollen A, Perry A | Acta neuropathologica | 31912209 | Acta Neuropathol | 2020 Mar |
| A review of recently described genetic alterations in central nervous system tumors. | Lucas CG, Solomon DA, Perry A | Human pathology | 31678207 | Hum Pathol | 2020 Feb |
| Loss of ZNF750 in ocular and cutaneous sebaceous carcinoma. | North JP, Solomon DA, Golovato J, Bloomer M, Benz SC, Cho RJ | Journal of cutaneous pathology | 31148199 | J Cutan Pathol | 2019 Oct |
| An update on the central nervous system manifestations of familial tumor predisposition syndromes. | Solomon DA | Acta neuropathologica | 32016553 | Acta Neuropathol | 2020 Apr |
| Pediatric bithalamic gliomas have a distinct epigenetic signature and frequent EGFR exon 20 insertions resulting in potential sensitivity to targeted kinase inhibition. | Mondal G, Lee JC, Ravindranathan A, Villanueva-Meyer JE, Tran QT, Allen SJ, Barreto J, Gupta R, Doo P, Van Ziffle J, Onodera C, Devine P, Grenert JP, Samuel D, Li R, Metrock LK, Jin LW, Antony R, Alashari M, Cheshier S, Whipple NS, Bruggers C, Raffel C, Gupta N, Kline CN, Reddy A, Banerjee A, Hall MD, Mehta MP, Khatib Z, Maher OM, Brathwaite C, Pekmezci M, Phillips JJ, Bollen AW, Tihan T, Lucas JT Jr, Broniscer A, Berger MS, Perry A, Orr BA, Solomon DA | Acta neuropathologica | 32303840 | Acta Neuropathol | 2020 Jun |
| Next-Generation Sequencing of Retinoblastoma Identifies Pathogenic Alterations beyond RB1 Inactivation That Correlate with Aggressive Histopathologic Features. | Afshar AR, Pekmezci M, Bloomer MM, Cadenas NJ, Stevers M, Banerjee A, Roy R, Olshen AB, Van Ziffle J, Onodera C, Devine WP, Grenert JP, Bastian BC, Solomon DA, Damato BE | Ophthalmology | 32139107 | Ophthalmology | 2020 Jun |
| Diffuse hemispheric glioma, H3 G34-mutant: Genomic landscape of a new tumor entity and prospects for targeted therapy. | Lucas CG, Mueller S, Reddy A, Taylor JW, Oberheim Bush NA, Clarke JL, Chang SM, Gupta N, Berger MS, Perry A, Phillips JJ, Solomon DA | Neuro-oncology | 34519829 | Neuro Oncol | 2021 Nov 2 |
| Genetic and epigenetic characterization of posterior pituitary tumors. | Schmid S, Solomon DA, Perez E, Thieme A, Kleinschmidt-DeMasters BK, Giannini C, Reinhardt A, Asa SL, Mete O, Stichel D, Siewert C, Dittmayer C, Hasselblatt M, Paulus W, Nagel C, Harter PN, Schittenhelm J, Honegger J, Rushing E, Coras R, Pfister SM, Buslei R, Koch A, Perry A, Jones DTW, von Deimling A, Capper D, Lopes MB | Acta neuropathologica | 34661724 | Acta Neuropathol | 2021 Dec |
| A genetically distinct pediatric subtype of primary CNS large B-cell lymphoma is associated with favorable clinical outcome. | Güney E, Lucas CG, Qi Z, Yu J, Zhang R, Ohgami RS, Rubenstein JL, Boué DR, Schafernak K, Wertheim GB, Dahiya S, Giulino-Roth L, Attarbaschi A, Barth MJ, Kothari S, Abla O, Cohen AL, Mendez JS, Bollen A, Perry A, Tihan T, Pekmezci M, Solomon DA, Wen KW | Blood advances | 35157770 | Blood Adv | 2022 May 24 |
| Tumor DNA requirements for accurate epigenetic-based classification of CNS neoplasia. | Wu J, Gupta R, Barreto J, Doo P, Joseph NM, Lee JC, Perry A, Chang SM, Berger MS, Solomon DA | Neuro-oncology | 34351421 | Neuro Oncol | 2021 Oct 1 |
| Low-grade glioneuronal tumors with FGFR2 fusion resolve into a single epigenetic group corresponding to 'Polymorphous low-grade neuroepithelial tumor of the young'. | Gupta R, Lucas CG, Wu J, Barreto J, Shah K, Simon IB, Casavilca-Zambrano S, Brathwaite C, Zhou H, Caccamo D, Gilani A, Kleinschmidt-DeMasters BK, Lee JC, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 34322742 | Acta Neuropathol | 2021 Sep |
| Genomic profiling of malignant peritoneal mesothelioma reveals recurrent alterations in epigenetic regulatory genes BAP1, SETD2, and DDX3X. | Joseph NM, Chen YY, Nasr A, Yeh I, Talevich E, Onodera C, Bastian BC, Rabban JT, Garg K, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 27813512 | Mod Pathol | 2017 Feb |
| High-grade neuroepithelial tumor with BCOR exon 15 internal tandem duplication-a comprehensive clinical, radiographic, pathologic, and genomic analysis. | Ferris SP, Velazquez Vega J, Aboian M, Lee JC, Van Ziffle J, Onodera C, Grenert JP, Saunders T, Chen YY, Banerjee A, Kline CN, Gupta N, Raffel C, Samuel D, Ruiz-Diaz I, Magaki S, Wilson D, Neltner J, Al-Hajri Z, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Schniederjan M, Cha S, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31104347 | Brain Pathol | 2020 Jan |
| Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma. | North JP, Golovato J, Vaske CJ, Sanborn JZ, Nguyen A, Wu W, Goode B, Stevers M, McMullen K, Perez White BE, Collisson EA, Bloomer M, Solomon DA, Benz SC, Cho RJ | Nature communications | 29760388 | Nat Commun | 2018 May 14 |
| The genetic landscape of ganglioglioma. | Pekmezci M, Villanueva-Meyer JE, Goode B, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Chamyan G, Maher OM, Khatib Z, Kleinschmidt-DeMasters BK, Samuel D, Mueller S, Banerjee A, Clarke JL, Cooney T, Torkildson J, Gupta N, Theodosopoulos P, Chang EF, Berger M, Bollen AW, Perry A, Tihan T, Solomon DA | Acta neuropathologica communications | 29880043 | Acta Neuropathol Commun | 2018 Jun 7 |
| Iris and Ciliary Body Melanocytomas Are Defined by Solitary GNAQ Mutation Without Additional Oncogenic Alterations. | Solomon DA, Ramani B, Eiger-Moscovich M, Milman T, Uludag G, Crawford JB, Phan I, Char DH, Shields CL, Eagle RC Jr, Bastian BC, Bloomer MM, Pekmezci M | Ophthalmology | 35835335 | Ophthalmology | 2022 Dec |
| Loss of p16 expression is a sensitive marker of CDKN2A homozygous deletion in malignant meningiomas. | Tang V, Lu R, Mirchia K, Van Ziffle J, Devine P, Lee J, Phillips JJ, Perry A, Raleigh DR, Lucas CG, Solomon DA | Acta neuropathologica | 36723772 | Acta Neuropathol | 2023 Apr |
| Intratumor and informatic heterogeneity influence meningioma molecular classification. | Vasudevan HN, Choudhury A, Hilz S, Villanueva-Meyer JE, Chen WC, Lucas CG, Braunstein SE, Oberheim Bush NA, Butowski N, Pekmezci M, McDermott MW, Perry A, Solomon DA, Magill ST, Raleigh DR | Acta neuropathologica | 35759011 | Acta Neuropathol | 2022 Sep |
| Molecular profiling identifies at least 3 distinct types of posttransplant lymphoproliferative disorder involving the CNS. | Guney E, Lucas CG, Singh K, Pekmezci M, Fernandez-Pol S, Mirchia K, Toland A, Vogel H, Bannykh S, Schafernak KT, Alexandrescu S, Mobley BC, Powell S, Davidson CJ, Neltner J, Boué DR, Hattab E, Ferris SP, Ohgami RS, Rubenstein JL, Bollen AW, Tihan T, Perry A, Solomon DA, Wen KW | Blood advances | 36897259 | Blood Adv | 2023 Jul 11 |
| Myxoid glioneuronal tumor of the septum pellucidum and lateral ventricle is defined by a recurrent PDGFRA p.K385 mutation and DNT-like methylation profile. | Solomon DA, Korshunov A, Sill M, Jones DTW, Kool M, Pfister SM, Fan X, Bannykh S, Hu J, Danielpour M, Li R, Johnston J, Cham E, Cooney T, Sun PP, Oberheim Bush NA, McDermott M, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Villanueva-Meyer JE, Pekmezci M, Bollen AW, Perry A | Acta neuropathologica | 30006677 | Acta Neuropathol | 2018 Aug |
| Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components. | Heskett MB, Sanborn JZ, Boniface C, Goode B, Chapman J, Garg K, Rabban JT, Zaloudek C, Benz SC, Spellman PT, Solomon DA, Cho RJ | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 31911616 | Mod Pathol | 2020 Jun |
| STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection. | Ding S, Diep J, Feng N, Ren L, Li B, Ooi YS, Wang X, Brulois KF, Yasukawa LL, Li X, Kuo CJ, Solomon DA, Carette JE, Greenberg HB | Nature communications | 29662124 | Nat Commun | 2018 Apr 16 |
| Activating NRF1-BRAF and ATG7-RAF1 fusions in anaplastic pleomorphic xanthoastrocytoma without BRAF p.V600E mutation. | Phillips JJ, Gong H, Chen K, Joseph NM, van Ziffle J, Jin LW, Bastian BC, Bollen AW, Perry A, Nicolaides T, Solomon DA, Shieh JT | Acta neuropathologica | 27624885 | Acta Neuropathol | 2016 Nov |
| Histopathologic review of pineal parenchymal tumors identifies novel morphologic subtypes and prognostic factors for outcome. | Raleigh DR, Solomon DA, Lloyd SA, Lazar A, Garcia MA, Sneed PK, Clarke JL, McDermott MW, Berger MS, Tihan T, Haas-Kogan DA | Neuro-oncology | 27282397 | Neuro Oncol | 2017 Jan |
| IDH1 mutation can be present in diffuse astrocytomas and giant cell glioblastomas of young children under 10 years of age. | Ferris SP, Goode B, Joseph NM, Kline CN, Samuel D, Gupta N, Bollen A, Perry A, Mueller S, Solomon DA | Acta neuropathologica | 27161253 | Acta Neuropathol | 2016 Jul |
| Adenomatoid tumors of the male and female genital tract are defined by TRAF7 mutations that drive aberrant NF-kB pathway activation. | Goode B, Joseph NM, Stevers M, Van Ziffle J, Onodera C, Talevich E, Grenert JP, Yeh I, Bastian BC, Phillips JJ, Garg K, Rabban JT, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 29148537 | Mod Pathol | 2018 Apr |
| Genomic analysis of the origins and evolution of multicentric diffuse lower-grade gliomas. | Hayes J, Yu Y, Jalbert LE, Mazor T, Jones LE, Wood MD, Walsh KM, Bengtsson H, Hong C, Oberndorfer S, Roetzer T, Smirnov IV, Clarke JL, Aghi MK, Chang SM, Nelson SJ, Woehrer A, Phillips JJ, Solomon DA, Costello JF | Neuro-oncology | 29077933 | Neuro Oncol | 2018 Apr 9 |
| Multimodal molecular analysis of astroblastoma enables reclassification of most cases into more specific molecular entities. | Wood MD, Tihan T, Perry A, Chacko G, Turner C, Pu C, Payne C, Yu A, Bannykh SI, Solomon DA | Brain pathology (Zurich, Switzerland) | 28960623 | Brain Pathol | 2018 Mar |
| The immunohistochemical, DNA methylation, and chromosomal copy number profile of cauda equina paraganglioma is distinct from extra-spinal paraganglioma. | Ramani B, Gupta R, Wu J, Barreto J, Bollen AW, Tihan T, Mummaneni PV, Ames C, Clark A, Oberheim Bush NA, Butowski N, Phillips D, King BE, Bator SM, Treynor EC, Zherebitskiy V, Quinn PS, Walker JB, Pekmezci M, Sullivan DV, Hofmann JW, Sloan EA, M Chang S, Berger MS, Solomon DA, Perry A | Acta neuropathologica | 32892244 | Acta Neuropathol | 2020 Dec |
| Clinical, radiologic, and genetic characteristics of histone H3 K27M-mutant diffuse midline gliomas in adults. | Schulte JD, Buerki RA, Lapointe S, Molinaro AM, Zhang Y, Villanueva-Meyer JE, Perry A, Phillips JJ, Tihan T, Bollen AW, Pekmezci M, Butowski N, Oberheim Bush NA, Taylor JW, Chang SM, Theodosopoulos P, Aghi MK, Hervey-Jumper SL, Berger MS, Solomon DA, Clarke JL | Neuro-oncology advances | 33354667 | Neurooncol Adv | 2020 Jan-Dec |
| Diffusion Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3-K27M Mutation Using Apparent Diffusion Coefficient Histogram Analysis. | Aboian MS, Tong E, Solomon DA, Kline C, Gautam A, Vardapetyan A, Tamrazi B, Li Y, Jordan CD, Felton E, Weinberg B, Braunstein S, Mueller S, Cha S | AJNR. American journal of neuroradiology | 31694820 | AJNR Am J Neuroradiol | 2019 Nov |
| Intracranial mesenchymal tumors with FET-CREB fusion are composed of at least two epigenetic subgroups distinct from meningioma and extracranial sarcomas. | Sloan EA, Gupta R, Koelsche C, Chiang J, Villanueva-Meyer JE, Alexandrescu S, Eschbacher JM, Wang W, Mafra M, Ud Din N, Carr-Boyd E, Watson M, Punsoni M, Oviedo A, Gilani A, Kleinschmidt-DeMasters BK, Coss DJ, Lopes MB, Reddy A, Mueller S, Cho SJ, Horvai AE, Lee JC, Pekmezci M, Tihan T, Bollen AW, Rodriguez FJ, Ellison DW, Perry A, von Deimling A, Chang SM, Berger MS, Solomon DA | Brain pathology (Zurich, Switzerland) | 34821426 | Brain Pathol | 2022 Jul |
| EWSR1-BEND2 fusion defines an epigenetically distinct subtype of astroblastoma. | Lucas CG, Gupta R, Wu J, Shah K, Ravindranathan A, Barreto J, Gener M, Ginn KF, Prall OWJ, Xu H, Kee D, Ko HS, Yaqoob N, Zia N, Florez A, Cha S, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 34825267 | Acta Neuropathol | 2022 Jan |
| Conserved features of TERT promoter duplications reveal an activation mechanism that mimics hotspot mutations in cancer. | Barger CJ, Suwala AK, Soczek KM, Wang AS, Kim MY, Hong C, Doudna JA, Chang SM, Phillips JJ, Solomon DA, Costello JF | Nature communications | 36114166 | Nat Commun | 2022 Sep 16 |
| Deconvoluting Mechanisms of Acquired Resistance to RAF Inhibitors in BRAF(V600E)-Mutant Human Glioma. | Schreck KC, Morin A, Zhao G, Allen AN, Flannery P, Glantz M, Green AL, Jones C, Jones KL, Kilburn LB, Nazemi KJ, Samuel D, Sanford B, Solomon DA, Wang J, Pratilas CA, Nicolaides T, Mulcahy Levy JM | Clinical cancer research : an official journal of the American Association for Cancer Research | 34433654 | Clin Cancer Res | 2021 Nov 15 |
| A requirement for STAG2 in replication fork progression creates a targetable synthetic lethality in cohesin-mutant cancers. | Mondal G, Stevers M, Goode B, Ashworth A, Solomon DA | Nature communications | 30975996 | Nat Commun | 2019 Apr 11 |
| Comprehensive analysis of diverse low-grade neuroepithelial tumors with FGFR1 alterations reveals a distinct molecular signature of rosette-forming glioneuronal tumor. | Lucas CG, Gupta R, Doo P, Lee JC, Cadwell CR, Ramani B, Hofmann JW, Sloan EA, Kleinschmidt-DeMasters BK, Lee HS, Wood MD, Grafe M, Born D, Vogel H, Salamat S, Puccetti D, Scharnhorst D, Samuel D, Cooney T, Cham E, Jin LW, Khatib Z, Maher O, Chamyan G, Brathwaite C, Bannykh S, Mueller S, Kline CN, Banerjee A, Reddy A, Taylor JW, Clarke JL, Oberheim Bush NA, Butowski N, Gupta N, Auguste KI, Sun PP, Roland JL, Raffel C, Aghi MK, Theodosopoulos P, Chang E, Hervey-Jumper S, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Chang S, Berger MS, Perry A, Solomon DA | Acta neuropathologica communications | 32859279 | Acta Neuropathol Commun | 2020 Aug 28 |
| Clinicopathologic and molecular features of intracranial desmoplastic small round cell tumors. | Lee JC, Villanueva-Meyer JE, Ferris SP, Cham EM, Zucker J, Cooney T, Gilani A, Kleinschmidt-DeMasters BK, Trembath D, Mafra M, Chiang J, Ellison DW, Cho SJ, Horvai AE, Van Ziffle J, Onodera C, Devine P, Grenert JP, de Voijs CMA, van Blokland WTM, de Leng WWJ, Ploegmakers MJ, Flucke U, Pekmezci M, Bollen AW, Tihan T, Koelsche C, von Deimling A, Wesseling P, Solomon DA, Perry A | Brain pathology (Zurich, Switzerland) | 31837177 | Brain Pathol | 2020 Mar |
| A recurrent kinase domain mutation in PRKCA defines chordoid glioma of the third ventricle. | Goode B, Mondal G, Hyun M, Ruiz DG, Lin YH, Van Ziffle J, Joseph NM, Onodera C, Talevich E, Grenert JP, Hewedi IH, Snuderl M, Brat DJ, Kleinschmidt-DeMasters BK, Rodriguez FJ, Louis DN, Yong WH, Lopes MB, Rosenblum MK, Butowski N, Tihan T, Bollen AW, Phillips JJ, Wiita AP, Yeh I, Jacobson MP, Bastian BC, Perry A, Solomon DA | Nature communications | 29476136 | Nat Commun | 2018 Feb 23 |
| STAG2 Is a Biomarker for Prediction of Recurrence and Progression in Papillary Non-Muscle-Invasive Bladder Cancer. | Lelo A, Prip F, Harris BT, Solomon D, Berry DL, Chaldekas K, Kumar A, Simko J, Jensen JB, Bhattacharyya P, Mannion C, Kim JS, Philips G, Dyrskjøt L, Waldman T | Clinical cancer research : an official journal of the American Association for Cancer Research | 29954776 | Clin Cancer Res | 2018 Sep 1 |
| ALK-positive histiocytosis with KIF5B-ALK fusion in the central nervous system. | Lucas CG, Gilani A, Solomon DA, Liang X, Maher OM, Chamyan G, Kleinschmidt-Demasters BK, Perry A | Acta neuropathologica | 31119374 | Acta Neuropathol | 2019 Aug |
| Diffuse non-midline glioma with H3F3A K27M mutation: a prognostic and treatment dilemma. | López G, Oberheim Bush NA, Berger MS, Perry A, Solomon DA | Acta neuropathologica communications | 28506301 | Acta Neuropathol Commun | 2017 May 15 |
| Familial melanoma-astrocytoma syndrome: synchronous diffuse astrocytoma and pleomorphic xanthoastrocytoma in a patient with germline CDKN2A/B deletion and a significant family history. | Chan AK, Han SJ, Choy W, Beleford D, Aghi MK, Berger MS, Shieh JT, Bollen AW, Perry A, Phillips JJ, Butowski N, Solomon DA | Clinical neuropathology | 28699883 | Clin Neuropathol | 2017 Sep/Oct |
| The role of histone modifications and telomere alterations in the pathogenesis of diffuse gliomas in adults and children. | Lee J, Solomon DA, Tihan T | Journal of neuro-oncology | 28064387 | J Neurooncol | 2017 Mar |
| Inactivating MUTYH germline mutations in pediatric patients with high-grade midline gliomas. | Kline CN, Joseph NM, Grenert JP, van Ziffle J, Yeh I, Bastian BC, Mueller S, Solomon DA | Neuro-oncology | 26902849 | Neuro Oncol | 2016 May |
| Imaging Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3 K27M Mutation. | Aboian MS, Solomon DA, Felton E, Mabray MC, Villanueva-Meyer JE, Mueller S, Cha S | AJNR. American journal of neuroradiology | 28183840 | AJNR Am J Neuroradiol | 2017 Apr |
| Intracranial mesenchymal tumor with FET-CREB fusion-A unifying diagnosis for the spectrum of intracranial myxoid mesenchymal tumors and angiomatoid fibrous histiocytoma-like neoplasms. | Sloan EA, Chiang J, Villanueva-Meyer JE, Alexandrescu S, Eschbacher JM, Wang W, Mafra M, Ud Din N, Carr-Boyd E, Watson M, Punsoni M, Oviedo A, Gilani A, Kleinschmidt-DeMasters BK, Coss DJ, Lopes MB, Raffel C, Berger MS, Chang SM, Reddy A, Ramani B, Ferris SP, Lee JC, Hofmann JW, Cho SJ, Horvai AE, Pekmezci M, Tihan T, Bollen AW, Rodriguez FJ, Ellison DW, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 33141488 | Brain Pathol | 2021 Jul |
| Activating NTRK2 and ALK receptor tyrosine kinase fusions extend the molecular spectrum of pleomorphic xanthoastrocytomas of early childhood: a diagnostic overlap with infant-type hemispheric glioma. | Lucas CG, Abdullaev Z, Bruggers CS, Mirchia K, Whipple NS, Alashari MM, Lowichik A, Cheshier S, Phillips JJ, Devine P, Solomon DA, Quezado M, Aldape KD, Perry A | Acta neuropathologica | 34910220 | Acta Neuropathol | 2022 Feb |
| Targeted Next-Generation Sequencing Reveals Divergent Clonal Evolution in Components of Composite Pleomorphic Xanthoastrocytoma-Ganglioglioma. | Lucas CG, Davidson CJ, Alashari M, Putnam AR, Whipple NS, Bruggers CS, Mendez JS, Cheshier SH, Walker JB, Ramani B, Cadwell CR, Sullivan DV, Lu R, Mirchia K, Van Ziffle J, Devine P, Goldschmidt E, Hervey-Jumper SL, Gupta N, Oberheim Bush NA, Raleigh DR, Bollen A, Tihan T, Pekmezci M, Solomon DA, Phillips JJ, Perry A | Journal of neuropathology and experimental neurology | 35703914 | J Neuropathol Exp Neurol | 2022 Jul 19 |
| SrmB Rescues Trapped Ribosome Assembly Intermediates. | Rabuck-Gibbons JN, Popova AM, Greene EM, Cervantes CF, Lyumkis D, Williamson JR | Journal of molecular biology | 31877323 | J Mol Biol | 2020 Feb 14 |
| Tools for visualizing and analyzing Fourier space sampling in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 32645314 | Prog Biophys Mol Biol | 2021 Mar |
| Challenges and opportunities in cryo-EM single-particle analysis. | Lyumkis D | The Journal of biological chemistry | 30804214 | J Biol Chem | 2019 Mar 29 |
| Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd. | Brugger C, Zhang C, Suhanovsky MM, Kim DD, Sinclair AN, Lyumkis D, Deaconescu AM | Nature communications | 32719356 | Nat Commun | 2020 Jul 27 |
| Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. | Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N | Cell | 31348888 | Cell | 2019 Jul 25 |
| Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates. | Rabuck-Gibbons JN, Lyumkis D, Williamson JR | Structure (London, England : 1993) | 34990602 | Structure | 2022 Apr 7 |
| Structural Basis for the Activation of IKK1/α. | Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G | Cell reports | 27851956 | Cell Rep | 2016 Nov 15 |
| Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease. | Polley S, Lyumkis D, Horton NC | Structure (London, England : 1993) | 31447289 | Structure | 2019 Oct 1 |
| Non-uniformity of projection distributions attenuates resolution in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 31525386 | Prog Biophys Mol Biol | 2020 Jan |
| Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant. | Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D | Nature communications | 30194371 | Nat Commun | 2018 Sep 7 |
| Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification. | Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D | Ultramicroscopy | 30528101 | Ultramicroscopy | 2019 Aug |
| Evaluating Local and Directional Resolution of Cryo-EM Density Maps. | Aiyer S, Zhang C, Baldwin PR, Lyumkis D | Methods in molecular biology (Clifton, N.J.) | 33368004 | Methods Mol Biol | 2021 |
| Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d. | Zhang C, Konermann S, Brideau NJ, Lotfy P, Wu X, Novick SJ, Strutzenberg T, Griffin PR, Hsu PD, Lyumkis D | Cell | 30241607 | Cell | 2018 Sep 20 |
| Addressing preferred specimen orientation in single-particle cryo-EM through tilting. | Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D | Nature methods | 28671674 | Nat Methods | 2017 Aug |
| Modular Assembly of the Bacterial Large Ribosomal Subunit. | Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR | Cell | 27912064 | Cell | 2016 Dec 1 |
| Establishment of hepatocellular carcinoma patient-derived xenografts from image-guided percutaneous biopsies. | Tischfield DJ, Ackerman D, Noji M, Chen JX, Johnson O, Perkons NR, Nadolski GJ, Hunt SJ, Soulen MC, Furth EE, Gade TP | Scientific reports | 31332214 | Sci Rep | 2019 Jul 22 |
| Tissue metabolic profiling shows that saccharopine accumulates during renal ischemic-reperfusion injury, while kynurenine and itaconate accumulate in renal allograft rejection. | Beier UH, Hartung EA, Concors S, Hernandez PT, Wang Z, Perry C, Baur JA, Denburg MR, Hancock WW, Gade TP, Levine MH | Metabolomics : Official journal of the Metabolomic Society | 32367163 | Metabolomics | 2020 May 4 |
| Pharmacodynamics and pharmacokinetics of hyperpolarized [1-(13) C]-pyruvate in a translational oncologic model. | Perkons NR, Johnson O, Pilla G, Gade TPF | NMR in biomedicine | 33772910 | NMR Biomed | 2021 Jun |
| Functional Genetic Screening Enables Theranostic Molecular Imaging in Cancer. | Perkons NR, Johnson O, Pilla G, Profka E, Mercadante M, Ackerman D, Gade TPF | Clinical cancer research : an official journal of the American Association for Cancer Research | 32499234 | Clin Cancer Res | 2020 Sep 1 |
| Computational pipeline for estimation of small-molecule T1 relaxation times. | Wildenberg JC, Perkons NR, Pilla G, Kadlecek S, Gade TPF | Journal of magnetic resonance (San Diego, Calif. : 1997) | 32339979 | J Magn Reson | 2020 May |
| Relative Initial Weight Is Associated with Improved Survival without Altering Tumor Latency in a Translational Rat Model of Diethylnitrosamine-Induced Hepatocellular Carcinoma and Transarterial Embolization. | Kiefer RM, Hunt SJ, Pulido S, Pickup S, Furth EE, Soulen MC, Nadolski GJ, Gade TP | Journal of vascular and interventional radiology : JVIR | 28495453 | J Vasc Interv Radiol | 2017 Jul |
| Hyperpolarized Metabolic Imaging Detects Latent Hepatocellular Carcinoma Domains Surviving Locoregional Therapy. | Perkons NR, Kiefer RM, Noji MC, Pourfathi M, Ackerman D, Siddiqui S, Tischfield D, Profka E, Johnson O, Pickup S, Mancuso A, Pantel A, Denburg MR, Nadolski GJ, Hunt SJ, Furth EE, Kadlecek S, Gade TPF | Hepatology (Baltimore, Md.) | 31553806 | Hepatology | 2020 Jul |
| Angiographic Atlas of the Visceral Vascular Anatomy in Translational Rat Models. | Shi D, Kiefer RM, Nishiofuku H, Cortes A, Nadolski GJ, Hunt SJ, Avritscher R, Gade TPF | Journal of vascular and interventional radiology : JVIR | 31202678 | J Vasc Interv Radiol | 2019 Dec |
| Radial Flow Perfusion Enables Real-Time Profiling of Cellular Metabolism at Low Oxygen Levels with Hyperpolarized (13)C NMR Spectroscopy. | Mancuso A, Pourfathi M, Kiefer RM, Noji MC, Siddiqui S, Profka E, Weber CN, Pantel A, Kadlecek SJ, Rizi R, Gade TPF | Metabolites | 34564392 | Metabolites | 2021 Aug 26 |
| Generating Single Cell-Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. | Giuliano CJ, Lin A, Girish V, Sheltzer JM | Current protocols in molecular biology | 31503414 | Curr Protoc Mol Biol | 2019 Sep |
| Chromosomal instability accelerates the evolution of resistance to anti-cancer therapies. | Lukow DA, Sausville EL, Suri P, Chunduri NK, Wieland A, Leu J, Smith JC, Girish V, Kumar AA, Kendall J, Wang Z, Storchova Z, Sheltzer JM | Developmental cell | 34352222 | Dev Cell | 2021 Sep 13 |
| Combustible and Electronic Cigarette Exposures Increase ACE2 Activity and SARS-CoV-2 Spike Binding. | Ghosh A, Girish V, Yuan ML, Coakley RD, Wrennall JA, Alexis NE, Sausville EL, Vasudevan A, Chait AR, Sheltzer JM, Tarran R | American journal of respiratory and critical care medicine | 34748720 | Am J Respir Crit Care Med | 2022 Jan 1 |
| Genome-wide identification and analysis of prognostic features in human cancers. | Smith JC, Sheltzer JM | Cell reports | 35354049 | Cell Rep | 2022 Mar 29 |
| Systematic identification of mutations and copy number alterations associated with cancer patient prognosis. | Smith JC, Sheltzer JM | eLife | 30526857 | Elife | 2018 Dec 11 |
| Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. | Hoffmann M, Hofmann-Winkler H, Smith JC, Krüger N, Arora P, Sørensen LK, Søgaard OS, Hasselstrøm JB, Winkler M, Hempel T, Raich L, Olsson S, Danov O, Jonigk D, Yamazoe T, Yamatsuta K, Mizuno H, Ludwig S, Noé F, Kjolby M, Braun A, Sheltzer JM, Pöhlmann S | EBioMedicine | 33676899 | EBioMedicine | 2021 Mar |
| MELK expression correlates with tumor mitotic activity but is not required for cancer growth. | Giuliano CJ, Lin A, Smith JC, Palladino AC, Sheltzer JM | eLife | 29417930 | Elife | 2018 Feb 8 |
| Discovering and validating cancer genetic dependencies: approaches and pitfalls. | Lin A, Sheltzer JM | Nature reviews. Genetics | 32561862 | Nat Rev Genet | 2020 Nov |
| Off-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials. | Lin A, Giuliano CJ, Palladino A, John KM, Abramowicz C, Yuan ML, Sausville EL, Lukow DA, Liu L, Chait AR, Galluzzo ZC, Tucker C, Sheltzer JM | Science translational medicine | 31511426 | Sci Transl Med | 2019 Sep 11 |
| A CRISPR Competition Assay to Identify Cancer Genetic Dependencies. | Girish V, Sheltzer JM | Bio-protocol | 33659353 | Bio Protoc | 2020 Jul 20 |
| CRISPR/Cas9 mutagenesis invalidates a putative cancer dependency targeted in on-going clinical trials. | Lin A, Giuliano CJ, Sayles NM, Sheltzer JM | eLife | 28337968 | Elife | 2017 Mar 24 |
| Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. | Hoffmann M, Hofmann-Winkler H, Smith JC, Krüger N, Sørensen LK, Søgaard OS, Hasselstrøm JB, Winkler M, Hempel T, Raich L, Olsson S, Yamazoe T, Yamatsuta K, Mizuno H, Ludwig S, Noé F, Sheltzer JM, Kjolby M, Pöhlmann S | bioRxiv : the preprint server for biology | 32793911 | bioRxiv | 2020 Aug 5 |
| Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract. | Smith JC, Sausville EL, Girish V, Yuan ML, Vasudevan A, John KM, Sheltzer JM | Developmental cell | 32425701 | Dev Cell | 2020 Jun 8 |
| Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. | Vasudevan A, Baruah PS, Smith JC, Wang Z, Sayles NM, Andrews P, Kendall J, Leu J, Chunduri NK, Levy D, Wigler M, Storchová Z, Sheltzer JM | Developmental cell | 32097652 | Dev Cell | 2020 Feb 24 |
| Extensive protein dosage compensation in aneuploid human cancers. | Schukken KM, Sheltzer JM | Genome research | 35701073 | Genome Res | 2022 Jul |
| Content analysis of targeted food and beverage advertisements in a Chinese-American neighbourhood. | Bragg MA, Pageot YK, Hernández-Villarreal O, Kaplan SA, Kwon SC | Public health nutrition | 28587693 | Public Health Nutr | 2017 Aug |
| Comparing McDonald's food marketing practices on official Instagram accounts across 15 countries. | Cassidy O, Shin HW, Song E, Jiang E, Harri R, Cano C, Vedanthan R, Ogedegbe G, Bragg M | BMJ nutrition, prevention & health | 35028520 | BMJ Nutr Prev Health | 2021 |
| Waste generation and carbon emissions of a hospital kitchen in the US: Potential for waste diversion and carbon reductions. | Thiel CL, Park S, Musicus AA, Agins J, Gan J, Held J, Horrocks A, Bragg MA | PloS one | 33730046 | PLoS One | 2021 |
| Popular Music Celebrity Endorsements in Food and Nonalcoholic Beverage Marketing. | Bragg MA, Miller AN, Elizee J, Dighe S, Elbel BD | Pediatrics | 27273712 | Pediatrics | 2016 Jul |
| Evaluating the influence of racially targeted food and beverage advertisements on Black and White adolescents' perceptions and preferences. | Bragg MA, Miller AN, Kalkstein DA, Elbel B, Roberto CA | Appetite | 31055011 | Appetite | 2019 Sep 1 |
| An online randomized trial of healthy default beverages and unhealthy beverage restrictions on children's menus. | Rummo PE, Moran AJ, Musicus AA, Roberto CA, Bragg MA | Preventive medicine reports | 33318891 | Prev Med Rep | 2020 Dec |
| A Qualitative Analysis of Black and White Adolescents' Perceptions of and Responses to Racially Targeted Food and Drink Commercials on Television. | Miller A, Cassidy O, Greene T, Arshonsky J, Albert SL, Bragg MA | International journal of environmental research and public health | 34770078 | Int J Environ Res Public Health | 2021 Nov 3 |
| Comparing the Prevalence of Alcohol, Combustible and Electronic Cigarettes, Hookah, and Marijuana, in Music Videos across 6 Genres of Popular Music from 2014-2020. | Albert SL, Rogers E, Hall Z, Zuardo G, Bragg MA | Substance use & misuse | 35377260 | Subst Use Misuse | 2022 |
| How Food Marketing on Instagram Shapes Adolescents' Food Preferences: Online Randomized Trial. | Bragg M, Lutfeali S, Greene T, Osterman J, Dalton M | Journal of medical Internet research | 34677136 | J Med Internet Res | 2021 Oct 22 |
| Marketing Food and Beverages to Youth Through Sports. | Bragg MA, Roberto CA, Harris JL, Brownell KD, Elbel B | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 29111226 | J Adolesc Health | 2018 Jan |
| Comparison of online marketing techniques on food and beverage companies' websites in six countries. | Bragg MA, Eby M, Arshonsky J, Bragg A, Ogedegbe G | Globalization and health | 29073900 | Global Health | 2017 Oct 26 |
| Fast food, beverage, and snack brands on social media in the United States: An examination of marketing techniques utilized in 2000 brand posts. | Bragg MA, Pageot YK, Amico A, Miller AN, Gasbarre A, Rummo PE, Elbel B | Pediatric obesity | 31875654 | Pediatr Obes | 2020 May |
| Child Social Media Influencers and Unhealthy Food Product Placement. | Alruwaily A, Mangold C, Greene T, Arshonsky J, Cassidy O, Pomeranz JL, Bragg M | Pediatrics | 33106342 | Pediatrics | 2020 Nov |
| Brands with personalities - good for businesses, but bad for public health? A content analysis of how food and beverage brands personify themselves on Twitter. | Greene T, Seet C, Rodríguez Barrio A, McIntyre D, Kelly B, Bragg MA | Public health nutrition | 33820575 | Public Health Nutr | 2022 Jan |
| Social Media Accounts of Food and Beverage Brands Have Disproportionately More Black and Hispanic Followers than White Followers. | Rummo PE, Arshonsky JH, Sharkey AL, Cassidy OL, Bragg MA | Health equity | 34235366 | Health Equity | 2021 |
| COVID-19-Related Changes to Drug-Selling Networks and Their Effects on People Who Use Illicit Opioids. | Frank D, Krawczyk N, Arshonsky J, Bragg MA, Friedman SR, Bunting AM | Journal of studies on alcohol and drugs | 36971722 | J Stud Alcohol Drugs | 2023 Mar |
| Food Industry Donations to Academic Programs: A Cross-Sectional Examination of the Extent of Publicly Available Data. | A Bragg M, Elbel B, Nestle M | International journal of environmental research and public health | 32138233 | Int J Environ Res Public Health | 2020 Mar 3 |
| Examining the Relationship between Youth-Targeted Food Marketing Expenditures and the Demographics of Social Media Followers. | Rummo PE, Cassidy O, Wells I, Coffino JA, Bragg MA | International journal of environmental research and public health | 32138342 | Int J Environ Res Public Health | 2020 Mar 3 |
| Understanding the Extent of Adolescents' Willingness to Engage With Food and Beverage Companies' Instagram Accounts: Experimental Survey Study. | Lutfeali S, Ward T, Greene T, Arshonsky J, Seixas A, Dalton M, Bragg MA | JMIR public health and surveillance | 33107836 | JMIR Public Health Surveill | 2020 Oct 27 |
| Sports Sponsorships of Food and Nonalcoholic Beverages. | Bragg MA, Miller AN, Roberto CA, Sam R, Sarda V, Harris JL, Brownell KD | Pediatrics | 29581181 | Pediatrics | 2018 Apr |
| A content analysis of outdoor non-alcoholic beverage advertisements in Ghana. | Bragg MA, Hardoby T, Pandit NG, Raji YR, Ogedegbe G | BMJ open | 28588104 | BMJ Open | 2017 Jun 6 |
| COVID-Washing in US Food and Beverage Marketing on Twitter: Content Analysis. | Tsai KA, Cassidy O, Arshonsky J, Bond S, Del Giudice IM, Bragg MA | JMIR formative research | 36040957 | JMIR Form Res | 2022 Oct 14 |
| Latinx and White Adolescents' Preferences for Latinx-Targeted Celebrity and Noncelebrity Food Advertisements: Experimental Survey Study. | Bragg MA, Lutfeali S, Gabler DG, Quintana Licona DA, Harris JL | Journal of medical Internet research | 39889276 | J Med Internet Res | 2025 Jan 31 |
| Associations between early-life stress exposure and internalizing symptomatology during the COVID-19 pandemic: Assessing the role of neurobehavioral mediators. | Foster JC, Cohodes EM, Brieant AE, McCauley S, Odriozola P, Zacharek SJ, Pierre JC, Hodges HR, Kribakaran S, Haberman JT, Holt-Gosselin B, Gee DG | Biological psychiatry global open science | 35959474 | Biol Psychiatry Glob Open Sci | 2022 Aug 6 |
| Lack of robust associations between prepandemic coping strategies and frontolimbic circuitry with depression and anxiety symptoms during the COVID-19 pandemic: A preregistered longitudinal study. | Holt-Gosselin B, Cohodes EM, McCauley S, Foster JC, Odriozola P, Zacharek SJ, Kribakaran S, Haberman JT, Hodges HR, Gee DG | Behavioral neuroscience | 36395014 | Behav Neurosci | 2022 Dec |
| Influences of early-life stress on frontolimbic circuitry: Harnessing a dimensional approach to elucidate the effects of heterogeneity in stress exposure. | Cohodes EM, Kitt ER, Baskin-Sommers A, Gee DG | Developmental psychobiology | 32227350 | Dev Psychobiol | 2021 Mar |
| Leveraging big data to map neurodevelopmental trajectories in pediatric anxiety. | Zacharek SJ, Kribakaran S, Kitt ER, Gee DG | Developmental cognitive neuroscience | 34147988 | Dev Cogn Neurosci | 2021 Aug |
| Stress and adolescence: vulnerability and opportunity during a sensitive window of development. | Sisk LM, Gee DG | Current opinion in psychology | 34818623 | Curr Opin Psychol | 2022 Apr |
| Associations among negative life events, changes in cortico-limbic connectivity, and psychopathology in the ABCD Study. | Brieant AE, Sisk LM, Gee DG | Developmental cognitive neuroscience | 34710799 | Dev Cogn Neurosci | 2021 Dec |
| Comparing neural correlates of conditioned inhibition between children with and without anxiety disorders - A preliminary study. | Harrewijn A, Kitt ER, Abend R, Matsumoto C, Odriozola P, Winkler AM, Leibenluft E, Pine DS, Gee DG | Behavioural brain research | 33160010 | Behav Brain Res | 2021 Feb 5 |
| Training the Next Generation of Clinical Psychological Scientists: A Data-Driven Call to Action. | Gee DG, DeYoung KA, McLaughlin KA, Tillman RM, Barch DM, Forbes EE, Krueger RF, Strauman TJ, Weierich MR, Shackman AJ | Annual review of clinical psychology | 35216523 | Annu Rev Clin Psychol | 2022 May 9 |
| When Uncertainty Is a Certainty: Optimizing Exposure-Based Therapies. | Gee DG, Odriozola P | Biological psychiatry global open science | 36325300 | Biol Psychiatry Glob Open Sci | 2021 Sep |
| Parents' emotion suppression exacerbates the effect of COVID-19 stress on youth internalizing symptomatology. | Cohodes EM, McCauley S, Preece DA, Gross JJ, Gee DG | Emotion (Washington, D.C.) | 36355667 | Emotion | 2023 Sep |
| Hippocampal Involvement in Safety Signal Learning Varies With Anxiety Among Healthy Adults. | Odriozola P, Kribakaran S, Cohodes EM, Zacharek SJ, McCauley S, Haberman JT, Quintela LA, Hernandez C, Spencer H, Pruessner L, Caballero C, Gee DG | Biological psychiatry global open science | 38298801 | Biol Psychiatry Glob Open Sci | 2024 Jan |
| Leveraging the developmental neuroscience of caregiving to promote resilience among youth exposed to adversity. | Gee DG, Cohodes EM | Development and psychopathology | 37929292 | Dev Psychopathol | 2023 Dec |
| Novel insights from actigraphy: Anxiety is associated with sleep quantity but not quality during childhood. | Cohodes EM, Abusch A, Odriozola P, Gee DG | Clinical child psychology and psychiatry | 30696260 | Clin Child Psychol Psychiatry | 2020 Jan |
| Parental Buffering of Stress in the Time of COVID-19: Family-Level Factors May Moderate the Association Between Pandemic-Related Stress and Youth Symptomatology. | Cohodes EM, McCauley S, Gee DG | Research on child and adolescent psychopathology | 33591457 | Res Child Adolesc Psychopathol | 2021 Jul |
| Development of the emotional brain. | Casey BJ, Heller AS, Gee DG, Cohen AO | Neuroscience letters | 29197573 | Neurosci Lett | 2019 Feb 6 |
| Individual differences in frontolimbic circuitry and anxiety emerge with adolescent changes in endocannabinoid signaling across species. | Gee DG, Fetcho RN, Jing D, Li A, Glatt CE, Drysdale AT, Cohen AO, Dellarco DV, Yang RR, Dale AM, Jernigan TL, Lee FS, Casey BJ, PING Consortium | Proceedings of the National Academy of Sciences of the United States of America | 27001846 | Proc Natl Acad Sci U S A | 2016 Apr 19 |
| Meta-analysis of Structural Magnetic Resonance Imaging Studies in Pediatric Posttraumatic Stress Disorder and Comparison With Related Conditions. | Kribakaran S, Danese A, Bromis K, Kempton MJ, Gee DG | Biological psychiatry. Cognitive neuroscience and neuroimaging | 31690501 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2020 Jan |
| When do sensitive periods emerge later in development? | Gee DG | Trends in cognitive sciences | 34933793 | Trends Cogn Sci | 2022 Feb |
| Associations among Household and Neighborhood Socioeconomic Disadvantages, Resting-state Frontoamygdala Connectivity, and Internalizing Symptoms in Youth. | Ip KI, Sisk LM, Horien C, Conley MI, Rapuano KM, Rosenberg MD, Greene AS, Scheinost D, Constable RT, Casey BJ, Baskin-Sommers A, Gee DG | Journal of cognitive neuroscience | 35104356 | J Cogn Neurosci | 2022 Sep 1 |
| Caregiving Influences on Development: A Sensitive Period for Biological Embedding of Predictability and Safety Cues. | Gee DG, Cohodes EM | Current directions in psychological science | 34675455 | Curr Dir Psychol Sci | 2021 Oct 1 |
| Ventral hippocampus interacts with prelimbic cortex during inhibition of threat response via learned safety in both mice and humans. | Meyer HC, Odriozola P, Cohodes EM, Mandell JD, Li A, Yang R, Hall BS, Haberman JT, Zacharek SJ, Liston C, Lee FS, Gee DG | Proceedings of the National Academy of Sciences of the United States of America | 31822612 | Proc Natl Acad Sci U S A | 2019 Dec 26 |
| Responding to threat: Associations between neural reactivity to and behavioral avoidance of threat in pediatric anxiety. | Kitt ER, Zacharek SJ, Odriozola P, Nardini C, Hommel G, Martino A, Anderson T, Spencer H, Broussard A, Dean J, Marin CE, Silverman WK, Lebowitz ER, Gee DG | Journal of affective disorders | 38290579 | J Affect Disord | 2024 Apr 15 |
| Family accommodation in pediatric anxiety: Relations with avoidance and self-efficacy. | Kitt ER, Lewis KM, Galbraith J, Abend R, Smith AR, Lebowitz ER, Pine DS, Gee DG | Behaviour research and therapy | 35613517 | Behav Res Ther | 2022 Jul |
| Reforming clinical psychological science training: The importance of collaborative decision-making with trainees. | Gee DG, Shackman AJ | Clinical psychological science : a journal of the Association for Psychological Science | 38550306 | Clin Psychol Sci | 2024 Jan |
| Implications of the Research Domain Criteria project for childhood anxiety and its disorders. | Lebowitz ER, Gee DG, Pine DS, Silverman WK | Clinical psychology review | 29526524 | Clin Psychol Rev | 2018 Aug |
| Normative range parenting and the developing brain: A scoping review and recommendations for future research. | Farber MJ, Gee DG, Hariri AR | The European journal of neuroscience | 33051903 | Eur J Neurosci | 2022 May |
| Learning About Safety: Conditioned Inhibition as a Novel Approach to Fear Reduction Targeting the Developing Brain. | Odriozola P, Gee DG | The American journal of psychiatry | 33167673 | Am J Psychiatry | 2021 Feb 1 |
| Genetic variation in endocannabinoid signaling is associated with differential network-level functional connectivity in youth. | Sisk LM, Rapuano KM, Conley MI, Greene AS, Horien C, Rosenberg MD, Scheinost D, Constable RT, Glatt CE, Casey BJ, Gee DG | Journal of neuroscience research | 34496065 | J Neurosci Res | 2022 Mar |
| Neurodevelopmental mechanisms linking early experiences and mental health: Translating science to promote well-being among youth. | Gee DG | The American psychologist | 36595400 | Am Psychol | 2022 Dec |
| Development and validation of the Dimensional Inventory of Stress and Trauma Across the Lifespan (DISTAL): A novel assessment tool to facilitate the dimensional study of psychobiological sequelae of exposure to adversity. | Cohodes EM, McCauley S, Pierre JC, Hodges HR, Haberman JT, Santiuste I, Rogers MK, Wang J, Mandell JD, Gee DG | Developmental psychobiology | 37073593 | Dev Psychobiol | 2023 May |
| Emotion regulation as a transdiagnostic factor in the development of internalizing and externalizing psychopathology: Current and future directions. | Aldao A, Gee DG, De Los Reyes A, Seager I | Development and psychopathology | 27739387 | Dev Psychopathol | 2016 Nov |
| Neurocognitive Development of Motivated Behavior: Dynamic Changes across Childhood and Adolescence. | Gee DG, Bath KG, Johnson CM, Meyer HC, Murty VP, van den Bos W, Hartley CA | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30381435 | J Neurosci | 2018 Oct 31 |
| Atypical frontoamygdala functional connectivity in youth with autism. | Odriozola P, Dajani DR, Burrows CA, Gabard-Durnam LJ, Goodman E, Baez AC, Tottenham N, Uddin LQ, Gee DG | Developmental cognitive neuroscience | 30581125 | Dev Cogn Neurosci | 2019 Jun |
| Predicting Mental Health in Adolescence: Frontoinsular Circuitry, Emotion in Daily Life, and Risk for Depression. | Gee DG, Caballero C | Biological psychiatry. Cognitive neuroscience and neuroimaging | 31395211 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2019 Aug |
| Caregiving influences on emotional learning and regulation: Applying a sensitive period model. | Gee DG | Current opinion in behavioral sciences | 33718534 | Curr Opin Behav Sci | 2020 Dec |
| Migration-related trauma and mental health among migrant children emigrating from Mexico and Central America to the United States: Effects on developmental neurobiology and implications for policy. | Cohodes EM, Kribakaran S, Odriozola P, Bakirci S, McCauley S, Hodges HR, Sisk LM, Zacharek SJ, Gee DG | Developmental psychobiology | 34292596 | Dev Psychobiol | 2021 Sep |
| Decomposing complex links between the childhood environment and brain structure in school-aged youth. | Hong SJ, Sisk LM, Caballero C, Mekhanik A, Roy AK, Milham MP, Gee DG | Developmental cognitive neuroscience | 33556882 | Dev Cogn Neurosci | 2021 Apr |
| The Role of the Endocannabinoid System and Genetic Variation in Adolescent Brain Development. | Meyer HC, Lee FS, Gee DG | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 28685756 | Neuropsychopharmacology | 2018 Jan |
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| Brain state expression and transitions are related to complex executive cognition in normative neurodevelopment. | Medaglia JD, Satterthwaite TD, Kelkar A, Ciric R, Moore TM, Ruparel K, Gur RC, Gur RE, Bassett DS | NeuroImage | 29126965 | Neuroimage | 2018 Feb 1 |
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| Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket. | Zimmerman B, Kelly B, McMillan BJ, Seegar TCM, Dror RO, Kruse AC, Blacklow SC | Cell | 27881302 | Cell | 2016 Nov 3 |
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| Accuracy of Valuations of Surgical Procedures in the Medicare Fee Schedule. | Chan DC, Huynh J, Studdert DM | The New England journal of medicine | 30995374 | N Engl J Med | 2019 Apr 18 |
| full-FORCE: A target-based method for training recurrent networks. | DePasquale B, Cueva CJ, Rajan K, Escola GS, Abbott LF | PloS one | 29415041 | PLoS One | 2018 |
| Learning multiple variable-speed sequences in striatum via cortical tutoring. | Murray JM, Escola GS | eLife | 28481200 | Elife | 2017 May 8 |
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| Remembrance of things practiced with fast and slow learning in cortical and subcortical pathways. | Murray JM, Escola GS | Nature communications | 33361766 | Nat Commun | 2020 Dec 23 |
| Developing and deploying a community healthcare worker-driven, digitally- enabled integrated care system for municipalities in rural Nepal. | Citrin D, Thapa P, Nirola I, Pandey S, Kunwar LB, Tenpa J, Acharya B, Rayamazi H, Thapa A, Maru S, Raut A, Poudel S, Timilsina D, Dhungana SK, Adhikari M, Khanal MN, Pratap Kc N, Acharya B, Karki KB, Singh DR, Bangura AH, Wacksman J, Storisteanu D, Halliday S, Schwarz R, Schwarz D, Choudhury N, Kumar A, Wu WJ, Kalaunee SP, Chaudhari P, Maru D | Healthcare (Amsterdam, Netherlands) | 29880283 | Healthc (Amst) | 2018 Sep |
| Designing and implementing an integrated non-communicable disease primary care intervention in rural Nepal. | Kumar A, Schwarz D, Acharya B, Agrawal P, Aryal A, Choudhury N, Citrin D, Dangal B, Deukmedjian G, Dhimal M, Dhungana S, Gauchan B, Gupta T, Halliday S, Jha D, Kalaunee SP, Karmacharya B, Kishore S, Koirala B, Kunwar L, Mahar R, Maru S, Mehanni S, Nirola I, Pandey S, Pant B, Pathak M, Poudel S, Rajbhandari I, Raut A, Rimal P, Schwarz R, Shrestha A, Thapa A, Thapa P, Thapa R, Wong L, Maru D | BMJ global health | 31139453 | BMJ Glob Health | 2019 |
| Treatment recommendations made by a consultant psychiatrist to improve the quality of care in a collaborative mental health intervention in rural Nepal. | Rimal P, Maru D, Chwastiak L, Agrawal P, Rao D, Swar S, Citrin D, Acharya B | BMC psychiatry | 32024490 | BMC Psychiatry | 2020 Feb 5 |
| An integrated intervention for chronic care management in rural Nepal: protocol of a type 2 hybrid effectiveness-implementation study. | Schwarz D, Dhungana S, Kumar A, Acharya B, Agrawal P, Aryal A, Baum A, Choudhury N, Citrin D, Dangal B, Dhimal M, Gauchan B, Gupta T, Halliday S, Karmacharya B, Kishore S, Koirala B, Kshatriya U, Levine E, Maru S, Rimal P, Sapkota S, Schwarz R, Shrestha A, Thapa A, Maru D | Trials | 31996250 | Trials | 2020 Jan 29 |
| Community-based postpartum contraceptive counselling in rural Nepal: a mixed-methods evaluation. | Wu WJ, Tiwari A, Choudhury N, Basnett I, Bhatt R, Citrin D, Halliday S, Kunwar L, Maru D, Nirola I, Pandey S, Rayamazi HJ, Sapkota S, Saud S, Thapa A, Goldberg A, Maru S | Sexual and reproductive health matters | 32546070 | Sex Reprod Health Matters | 2020 Dec |
| Impact of the roll out of comprehensive emergency obstetric care on institutional birth rate in rural Nepal. | Maru S, Bangura AH, Mehta P, Bista D, Borgatta L, Pande S, Citrin D, Khanal S, Banstola A, Maru D | BMC pregnancy and childbirth | 28259150 | BMC Pregnancy Childbirth | 2017 Mar 4 |
| Accountable Care Reforms Improve Women's And Children's Health In Nepal. | Maru D, Maru S, Nirola I, Gonzalez-Smith J, Thoumi A, Nepal P, Chaudary P, Basnett I, Udayakumar K, McClellan M | Health affairs (Project Hope) | 29137510 | Health Aff (Millwood) | 2017 Nov |
| Power, potential, and pitfalls in global health academic partnerships: review and reflections on an approach in Nepal. | Citrin D, Mehanni S, Acharya B, Wong L, Nirola I, Sherchan R, Gauchan B, Karki KB, Singh DR, Shamasunder S, Le P, Schwarz D, Schwarz R, Dangal B, Dhungana SK, Maru S, Mahar R, Thapa P, Raut A, Adhikari M, Basnett I, Kaluanee SP, Deukmedjian G, Halliday S, Maru D | Global health action | 28914185 | Glob Health Action | 2017 |
| Delivering Collaborative Care in Rural Settings: Integrating Remote Teleconsultation and Local Supervision in Rural Nepal. | Swar S, Rimal P, Gauchan B, Maru D, Yang Y, Acharya B | Psychiatric services (Washington, D.C.) | 30220241 | Psychiatr Serv | 2019 Jan 1 |
| Comparing two data collection methods to track vital events in maternal and child health via community health workers in rural Nepal. | Choudhury N, Tiwari A, Wu WJ, Bhandari V, Bhatta L, Bogati B, Citrin D, Halliday S, Khadka S, Marasini N, Pandey S, Ballard M, Rayamazi HJ, Sapkota S, Schwarz R, Sullivan L, Maru D, Thapa A, Maru S | Population health metrics | 35897038 | Popul Health Metr | 2022 Jul 27 |
| Implementing a quality improvement initiative for the management of chronic obstructive pulmonary disease in rural Nepal. | Mehanni S, Jha D, Kumar A, Choudhury N, Dangal B, Deukmedjian G, Dhungana SK, Gauchan B, Gupta TK, Halliday S, Kalaunee SP, Mahar R, Poudel S, Raut A, Schwarz R, Singh DR, Thapa A, Thapa R, Wong L, Maru D, Schwarz D | BMJ open quality | 31259269 | BMJ Open Qual | 2019 |
| Measuring fidelity, feasibility, costs: an implementation evaluation of a cluster-controlled trial of group antenatal care in rural Nepal. | Harsha Bangura A, Nirola I, Thapa P, Citrin D, Belbase B, Bogati B, B K N, Khadka S, Kunwar L, Halliday S, Choudhury N, Schwarz R, Adhikari M, Kalaunee SP, Rising S, Maru D, Maru S | Reproductive health | 31952543 | Reprod Health | 2020 Jan 17 |
| The power of peers: an effectiveness evaluation of a cluster-controlled trial of group antenatal care in rural Nepal. | Thapa P, Bangura AH, Nirola I, Citrin D, Belbase B, Bogati B, Nirmala BK, Khadka S, Kunwar L, Halliday S, Choudhury N, Ozonoff A, Tenpa J, Schwarz R, Adhikari M, Kalaunee SP, Rising S, Maru D, Maru S | Reproductive health | 31640770 | Reprod Health | 2019 Oct 22 |
| Costing Analysis of a Pilot Community Health Worker Program in Rural Nepal. | Nepal P, Schwarz R, Citrin D, Thapa A, Acharya B, Acharya Y, Aryal A, Baum A, Bhandari V, Bhatt L, Bhattarai D, Choudhury N, Dangal B, Dhimal M, Dhungana SK, Gauchan B, Halliday S, Kalaunee SP, Kunwar LB, Maru D, Nirola I, Paudel R, Raut A, Rayamazi HJ, Sapkota S, Schwarz D, Thapa P, Thapa P, Tiwari A, Tuitui R, Walter E, Maru S | Global health, science and practice | 32606093 | Glob Health Sci Pract | 2020 Jun 30 |
| Practical issues in the measurement of child survival in health systems trials: experience developing a digital community-based mortality surveillance programme in rural Nepal. | Harsha Bangura A, Ozonoff A, Citrin D, Thapa P, Nirola I, Maru S, Schwarz R, Raut A, Belbase B, Halliday S, Adhikari M, Maru D | BMJ global health | 28588974 | BMJ Glob Health | 2016 |
| Design and implementation of an affordable, public sector electronic medical record in rural Nepal. | Raut A, Yarbrough C, Singh V, Gauchan B, Citrin D, Verma V, Hawley J, Schwarz D, Harsha Bangura A, Shrestha B, Schwarz R, Adhikari M, Maru D | Journal of innovation in health informatics | 28749321 | J Innov Health Inform | 2017 Jun 23 |
| An integrated community health worker intervention in rural Nepal: a type 2 hybrid effectiveness-implementation study protocol. | Maru S, Nirola I, Thapa A, Thapa P, Kunwar L, Wu WJ, Halliday S, Citrin D, Schwarz R, Basnett I, Kc N, Karki K, Chaudhari P, Maru D | Implementation science : IS | 29598824 | Implement Sci | 2018 Mar 29 |
| High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh. | Flaherty KE, Grembi JA, Ramachandran VV, Haque F, Khatun S, Rahman M, Maples S, Becker TK, Spormann AM, Schoolnik GK, Hryckowian AJ, Nelson EJ | PloS one | 34597302 | PLoS One | 2021 |
| Derivation and external validation of a clinical prognostic model identifying children at risk of death following presentation for diarrheal care. | Ahmed SM, Brintz BJ, Talbert A, Ngari M, Pavlinac PB, Platts-Mills JA, Levine AC, Nelson EJ, Walson JL, Kotloff KL, Berkley JA, Leung DT | medRxiv : the preprint server for health sciences | 36798150 | medRxiv | 2023 Feb 10 |
| Evaluation of Standard and Mobile Health-Supported Clinical Diagnostic Tools for Assessing Dehydration in Patients with Diarrhea in Rural Bangladesh. | Bilal S, Nelson E, Meisner L, Alam M, Al Amin S, Ashenafi Y, Teegala S, Khan AF, Alam N, Levine A | The American journal of tropical medicine and hygiene | 29761756 | Am J Trop Med Hyg | 2018 Jul |
| Clinical predictors for etiology of acute diarrhea in children in resource-limited settings. | Brintz BJ, Howard JI, Haaland B, Platts-Mills JA, Greene T, Levine AC, Nelson EJ, Pavia AT, Kotloff KL, Leung DT | PLoS neglected tropical diseases | 33035209 | PLoS Negl Trop Dis | 2020 Oct |
| An ethnographic exploration of diarrheal disease management in public hospitals in Bangladesh: From problems to solutions. | Biswas D, Hossin R, Rahman M, Bardosh KL, Watt MH, Zion MI, Sujon H, Rashid MM, Salimuzzaman M, Flora MS, Qadri F, Khan AI, Nelson EJ | Social science & medicine (1982) | 32712557 | Soc Sci Med | 2020 Sep |
| Development and evaluation of a clinical guideline for a paediatric telemedicine service in a low-resource setting. | Klarman MB, Chi X, Cajusma Y, Flaherty KE, Capois AC, Dofiné MDV, Exantus L, Friesen J, Beau de Rochars VM, Becker T, Baril C, Gurka MJ, Nelson EJ | BMJ paediatrics open | 38191203 | BMJ Paediatr Open | 2024 Jan 8 |
| External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali. | Garbern SC, Nelson EJ, Nasrin S, Keita AM, Brintz BJ, Gainey M, Badji H, Nasrin D, Howard J, Taniuchi M, Platts-Mills JA, Kotloff KL, Haque R, Levine AC, Sow SO, Alam NH, Leung DT | eLife | 35137684 | Elife | 2022 Feb 9 |
| Determinants of severe dehydration from diarrheal disease at hospital presentation: Evidence from 22 years of admissions in Bangladesh. | Andrews JR, Leung DT, Ahmed S, Malek MA, Ahmed D, Begum YA, Qadri F, Ahmed T, Faruque ASG, Nelson EJ | PLoS neglected tropical diseases | 28448489 | PLoS Negl Trop Dis | 2017 Apr |
| Evaluation of a Smartphone Decision-Support Tool for Diarrheal Disease Management in a Resource-Limited Setting. | Haque F, Ball RL, Khatun S, Ahmed M, Kache S, Chisti MJ, Sarker SA, Maples SD, Pieri D, Vardhan Korrapati T, Sarnquist C, Federspiel N, Rahman MW, Andrews JR, Rahman M, Nelson EJ | PLoS neglected tropical diseases | 28103233 | PLoS Negl Trop Dis | 2017 Jan |
| Is a Cholera Outbreak Preventable in Post-earthquake Nepal? | Nelson EJ, Andrews JR, Maples S, Barry M, Clemens JD | PLoS neglected tropical diseases | 26270343 | PLoS Negl Trop Dis | 2015 Aug |
| Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions. | Hryckowian AJ, Merrill BD, Porter NT, Van Treuren W, Nelson EJ, Garlena RA, Russell DA, Martens EC, Sonnenburg JL | Cell host & microbe | 32652063 | Cell Host Microbe | 2020 Sep 9 |
| Opportunities to catalyse improved healthcare access in pluralistic systems: a cross-sectional study in Haiti. | Klarman M, Schon J, Cajusma Y, Maples S, Beau de Rochars VEM, Baril C, Nelson EJ | BMJ open | 34810180 | BMJ Open | 2021 Nov 22 |
| Identification of Widespread Antibiotic Exposure in Patients With Cholera Correlates With Clinically Relevant Microbiota Changes. | Alexandrova L, Haque F, Rodriguez P, Marrazzo AC, Grembi JA, Ramachandran V, Hryckowian AJ, Adams CM, Siddique MSA, Khan AI, Qadri F, Andrews JR, Rahman M, Spormann AM, Schoolnik GK, Chien A, Nelson EJ | The Journal of infectious diseases | 31192364 | J Infect Dis | 2019 Oct 8 |
| Toxigenic Vibrio cholerae evolution and establishment of reservoirs in aquatic ecosystems. | Mavian C, Paisie TK, Alam MT, Browne C, Beau De Rochars VM, Nembrini S, Cash MN, Nelson EJ, Azarian T, Ali A, Morris JG Jr, Salemi M | Proceedings of the National Academy of Sciences of the United States of America | 32229557 | Proc Natl Acad Sci U S A | 2020 Apr 7 |
| Electronic decision support and diarrhoeal disease guideline adherence (mHDM): a cluster randomised controlled trial. | Khan AI, Mack JA, Salimuzzaman M, Zion MI, Sujon H, Ball RL, Maples S, Rashid MM, Chisti MJ, Sarker SA, Biswas D, Hossin R, Bardosh KL, Begum YA, Ahmed A, Pieri D, Haque F, Rahman M, Levine AC, Qadri F, Flora MS, Gurka MJ, Nelson EJ | The Lancet. Digital health | 33328057 | Lancet Digit Health | 2020 May |
| Gold Standard Cholera Diagnostics Are Tarnished by Lytic Bacteriophage and Antibiotics. | Nelson EJ, Grembi JA, Chao DL, Andrews JR, Alexandrova L, Rodriguez PH, Ramachandran VV, Sayeed MA, Wamala JF, Debes AK, Sack DA, Hryckowian AJ, Haque F, Khatun S, Rahman M, Chien A, Spormann AM, Schoolnik GK | Journal of clinical microbiology | 32611794 | J Clin Microbiol | 2020 Aug 24 |
| Socioeconomic Determinants of Cipro-floxacin-Resistant Shigella Infections in Bangladeshi Children. | Gruninger RJ, Johnson RA, Das SK, Nelson EJ, Spivak ES, Contreras JR, Faruque ASG, Leung DT | Pathogens & immunity | 28603782 | Pathog Immun | 2017 |
| Improving Antibiotic Stewardship for Diarrheal Disease With Probability-Based Electronic Clinical Decision Support: A Randomized Crossover Trial. | Nelson EJ, Khan AI, Keita AM, Brintz BJ, Keita Y, Sanogo D, Islam MT, Khan ZH, Rashid MM, Nasrin D, Watt MH, Ahmed SM, Haaland B, Pavia AT, Levine AC, Chao DL, Kotloff KL, Qadri F, Sow SO, Leung DT | JAMA pediatrics | 36036920 | JAMA Pediatr | 2022 Oct 1 |
| Implementation of a Pediatric Telemedicine and Medication Delivery Service in a Resource-limited Setting: A Pilot Study for Clinical Safety and Feasibility. | Klarman MB, Flaherty KE, Chi X, Cajusma Y, Capois AC, Vladimir Dofiné MD, Exantus L, Friesen J, Beau de Rochars VM, Baril C, Gurka MJ, Becker TK, Nelson EJ | The Journal of pediatrics | 36528053 | J Pediatr | 2023 Jun |
| Genome-wide association studies reveal distinct genetic correlates and increased heritability of antimicrobial resistance in Vibrio cholerae under anaerobic conditions. | Creasy-Marrazzo A, Saber MM, Kamat M, Bailey LS, Brinkley L, Cato E, Begum Y, Rashid MM, Khan AI, Qadri F, Basso KB, Shapiro BJ, Nelson EJ | Microbial genomics | 36748512 | Microb Genom | 2022 Dec |
| Fc Gamma Receptors and Complement Component 3 Facilitate Anti-fVIII Antibody Formation. | Zerra PE, Arthur CM, Chonat S, Maier CL, Mener A, Shin S, Allen JWL, Baldwin WH, Cox C, Verkerke H, Jajosky RP, Tormey CA, Meeks SL, Stowell SR | Frontiers in immunology | 32582142 | Front Immunol | 2020 |
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| Antibody-mediated immune suppression by antigen modulation is antigen-specific. | Maier CL, Mener A, Patel SR, Jajosky RP, Bennett AL, Arthur CM, Hendrickson JE, Stowell SR | Blood advances | 30413434 | Blood Adv | 2018 Nov 13 |
| Full-Length Galectin-3 Is Required for High Affinity Microbial Interactions and Antimicrobial Activity. | Wu SC, Ho AD, Kamili NA, Wang J, Murdock KL, Cummings RD, Arthur CM, Stowell SR | Frontiers in microbiology | 34690972 | Front Microbiol | 2021 |
| Intestinal epithelial glycosylation in homeostasis and gut microbiota interactions in IBD. | Kudelka MR, Stowell SR, Cummings RD, Neish AS | Nature reviews. Gastroenterology & hepatology | 32710014 | Nat Rev Gastroenterol Hepatol | 2020 Oct |
| Galectin-9 recognizes and exhibits antimicrobial activity toward microbes expressing blood group-like antigens. | Blenda AV, Kamili NA, Wu SC, Abel WF, Ayona D, Gerner-Smidt C, Ho AD, Benian GM, Cummings RD, Arthur CM, Stowell SR | The Journal of biological chemistry | 35148986 | J Biol Chem | 2022 Apr |
| Protein glycosylation in cancer. | Stowell SR, Ju T, Cummings RD | Annual review of pathology | 25621663 | Annu Rev Pathol | 2015 |
| CD8+ T cells mediate antibody-independent platelet clearance in mice. | Arthur CM, Patel SR, Sullivan HC, Winkler AM, Tormey CA, Hendrickson JE, Stowell SR | Blood | 26787734 | Blood | 2016 Apr 7 |
| Nonhuman glycans can regulate anti-factor VIII antibody formation in mice. | Arthur CM, Zerra PE, Shin S, Wang J, Song X, Doering CB, Lollar P, Meeks S, Stowell SR | Blood | 34019619 | Blood | 2022 Mar 3 |
| Marginal zone B cells mediate a CD4 T-cell-dependent extrafollicular antibody response following RBC transfusion in mice. | Zerra PE, Patel SR, Jajosky RP, Arthur CM, McCoy JW, Allen JWL, Chonat S, Fasano RM, Roback JD, Josephson CD, Hendrickson JE, Stowell SR | Blood | 33876205 | Blood | 2021 Aug 26 |
| Examining the Role of Complement in Predicting, Preventing, and Treating Hemolytic Transfusion Reactions. | Arthur CM, Chonat S, Fasano R, Yee MEM, Josephson CD, Roback JD, Stowell SR | Transfusion medicine reviews | 31679762 | Transfus Med Rev | 2019 Oct |
| A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface. | Wu H, Shajahan A, Yang JY, Capota E, Wands AM, Arthur CM, Stowell SR, Moremen KW, Azadi P, Kohler JJ | Cell chemical biology | 34331854 | Cell Chem Biol | 2022 Jan 20 |
| Key regulators of galectin-glycan interactions. | Kamili NA, Arthur CM, Gerner-Smidt C, Tafesse E, Blenda A, Dias-Baruffi M, Stowell SR | Proteomics | 27582340 | Proteomics | 2016 Dec |
| Antibody-mediated immunosuppression can result from RBC antigen loss independent of Fcγ receptors in mice. | Mener A, Patel SR, Arthur CM, Stowell SR | Transfusion | 30474857 | Transfusion | 2019 Jan |
| Anemia induces gut inflammation and injury in an animal model of preterm infants. | Arthur CM, Nalbant D, Feldman HA, Saeedi BJ, Matthews J, Robinson BS, Kamili NA, Bennett A, Cress GA, Sola-Visner M, Jones RM, Zimmerman MB, Neish AS, Patel RM, Nopoulos P, Georgieff MK, Roback JD, Widness JA, Josephson CD, Stowell SR | Transfusion | 30897226 | Transfusion | 2019 Apr |
| Generation and Use of Recombinant Galectins. | Wu SC, Paul A, Ho A, Patel KR, Allen JWL, Verkerke H, Arthur CM, Stowell SR | Current protocols | 33656274 | Curr Protoc | 2021 Mar |
| The role of galectins in immunity and infection. | Liu FT, Stowell SR | Nature reviews. Immunology | 36646848 | Nat Rev Immunol | 2023 Aug |
| The Sweet-Side of Leukocytes: Galectins as Master Regulators of Neutrophil Function. | Robinson BS, Arthur CM, Evavold B, Roback E, Kamili NA, Stowell CS, Vallecillo-Zúniga ML, Van Ry PM, Dias-Baruffi M, Cummings RD, Stowell SR | Frontiers in immunology | 31440233 | Front Immunol | 2019 |
| Marginal Zone B Cells Induce Alloantibody Formation Following RBC Transfusion. | Patel SR, Gibb DR, Girard-Pierce K, Zhou X, Rodrigues LC, Arthur CM, Bennett AL, Jajosky RP, Fuller M, Maier CL, Zerra PE, Chonat S, Smith NH, Tormey CA, Hendrickson JE, Stowell SR | Frontiers in immunology | 30505302 | Front Immunol | 2018 |
| Antigen Density Dictates Immune Responsiveness following Red Blood Cell Transfusion. | Arthur CM, Patel SR, Smith NH, Bennett A, Kamili NA, Mener A, Gerner-Smidt C, Sullivan HC, Hale JS, Wieland A, Youngblood B, Zimring JC, Hendrickson JE, Stowell SR | Journal of immunology (Baltimore, Md. : 1950) | 28250159 | J Immunol | 2017 Apr 1 |
| Complement Component 3 Negatively Regulates Antibody Response by Modulation of Red Blood Cell Antigen. | Mener A, Arthur CM, Patel SR, Liu J, Hendrickson JE, Stowell SR | Frontiers in immunology | 29942300 | Front Immunol | 2018 |
| Complement serves as a switch between CD4+ T cell-independent and -dependent RBC antibody responses. | Mener A, Patel SR, Arthur CM, Chonat S, Wieland A, Santhanakrishnan M, Liu J, Maier CL, Jajosky RP, Girard-Pierce K, Bennett A, Zerra PE, Smith NH, Hendrickson JE, Stowell SR | JCI insight | 30429364 | JCI Insight | 2018 Nov 15 |
| Innate immunity against molecular mimicry: Examining galectin-mediated antimicrobial activity. | Arthur CM, Patel SR, Mener A, Kamili NA, Fasano RM, Meyer E, Winkler AM, Sola-Visner M, Josephson CD, Stowell SR | BioEssays : news and reviews in molecular, cellular and developmental biology | 26577077 | Bioessays | 2015 Dec |
| Daratumumab (anti-CD38) induces loss of CD38 on red blood cells. | Sullivan HC, Gerner-Smidt C, Nooka AK, Arthur CM, Thompson L, Mener A, Patel SR, Yee M, Fasano RM, Josephson CD, Kaufman RM, Roback JD, Lonial S, Stowell SR | Blood | 28373263 | Blood | 2017 Jun 1 |
| Recipient priming to one RBC alloantigen directly enhances subsequent alloimmunization in mice. | Patel SR, Bennett A, Girard-Pierce K, Maier CL, Chonat S, Arthur CM, Zerra PE, Mener A, Stowell SR | Blood advances | 29365318 | Blood Adv | 2018 Jan 23 |
| Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk. | Kudelka MR, Hinrichs BH, Darby T, Moreno CS, Nishio H, Cutler CE, Wang J, Wu H, Zeng J, Wang Y, Ju T, Stowell SR, Nusrat A, Jones RM, Neish AS, Cummings RD | Proceedings of the National Academy of Sciences of the United States of America | 27930307 | Proc Natl Acad Sci U S A | 2016 Dec 20 |
| Innate immune Galectin-7 specifically targets microbes that decorate themselves in blood group-like antigens. | Wu SC, Kamili NA, Dias-Baruffi M, Josephson CD, Rathgeber MF, Yeung MY, Lane WJ, Wang J, Jan HM, Rakoff-Nahoum S, Cummings RD, Stowell SR, Arthur CM | iScience | 35754739 | iScience | 2022 Jul 15 |
| Targeting altered glycosylation in secreted tumor glycoproteins for broad cancer detection. | Kudelka MR, Gu W, Matsumoto Y, Ju T, Barnes Ii RH, Kardish RJ, Heimburg-Molinaro J, Lehoux S, Zeng J, Cohen C, Robinson BS, Shah KS, Chaikof EL, Stowell SR, Cummings RD | Glycobiology | 37216646 | Glycobiology | 2023 Aug 14 |
| ABO blood group antigens and differential glycan expression: Perspective on the evolution of common human enzyme deficiencies. | Jajosky RP, Wu SC, Zheng L, Jajosky AN, Jajosky PG, Josephson CD, Hollenhorst MA, Sackstein R, Cummings RD, Arthur CM, Stowell SR | iScience | 36691627 | iScience | 2023 Jan 20 |
| Numerical simulation of a compound capsule in a constricted microchannel. | Gounley J, Draeger EW, Randles A | Procedia computer science | 28831291 | Procedia Comput Sci | 2017 |
| Characterization of hemodynamics in anomalous aortic origin of coronary arteries using patient-specific modeling. | Chidyagwai SG, Vardhan M, Kaplan M, Chamberlain R, Barker P, Randles A | Journal of biomechanics | 35063831 | J Biomech | 2022 Feb |
| Surgical Modulation of Pulmonary Artery Shear Stress: A Patient-Specific CFD Analysis of the Norwood Procedure. | Chidyagwai SG, Kaplan MS, Jensen CW, Chen JS, Chamberlain RC, Hill KD, Barker PCA, Slesnick TC, Randles A | Cardiovascular engineering and technology | 38459240 | Cardiovasc Eng Technol | 2024 Aug |
| The role of adhesive receptor patterns on cell transport in complex microvessels. | Puleri DF, Randles A | Biomechanics and modeling in mechanobiology | 35507242 | Biomech Model Mechanobiol | 2022 Aug |
| Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity? | Gounley J, Chaudhury R, Vardhan M, Driscoll M, Pathangey G, Winarta K, Ryan J, Frakes D, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 28269039 | Annu Int Conf IEEE Eng Med Biol Soc | 2016 Aug |
| Multi-GPU Immersed Boundary Method Hemodynamics Simulations. | Ames J, Puleri DF, Balogh P, Gounley J, Draeger EW, Randles A | Journal of computational science | 32754287 | J Comput Sci | 2020 Jul |
| Determining the impacts of venoarterial extracorporeal membrane oxygenation on cerebral oxygenation using a one-dimensional blood flow simulator. | Feiger B, Kochar A, Gounley J, Bonadonna D, Daneshmand M, Randles A | Journal of biomechanics | 32220425 | J Biomech | 2020 May 7 |
| Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease. | Randles A, Frakes DH, Leopold JA | Trends in biotechnology | 28942268 | Trends Biotechnol | 2017 Nov |
| Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature. | Randles A, Draeger EW, Bailey PE | Journal of computational science | 29152011 | J Comput Sci | 2015 Jul |
| Suitability of lattice Boltzmann inlet and outlet boundary conditions for simulating flow in image-derived vasculature. | Feiger B, Vardhan M, Gounley J, Mortensen M, Nair P, Chaudhury R, Frakes D, Randles A | International journal for numerical methods in biomedical engineering | 30838793 | Int J Numer Method Biomed Eng | 2019 Jun |
| Computing the ankle-brachial index with parallel computational fluid dynamics. | Gounley J, Draeger EW, Oppelstrup T, Krauss WD, Gunnels JA, Chaudhury R, Nair P, Frakes D, Leopold JA, Randles A | Journal of biomechanics | 30385003 | J Biomech | 2019 Jan 3 |
| Hemodynamic and morphological characteristics of a growing cerebral aneurysm. | Dabagh M, Nair P, Gounley J, Frakes D, Gonzalez LF, Randles A | Neurosurgical focus | 31261117 | Neurosurg Focus | 2019 Jul 1 |
| Multiscale modeling of blood flow to assess neurological complications in patients supported by venoarterial extracorporeal membrane oxygenation. | Feiger B, Adebiyi A, Randles A | Computers in biology and medicine | 33333365 | Comput Biol Med | 2021 Feb |
| Multivascular networks and functional intravascular topologies within biocompatible hydrogels. | Grigoryan B, Paulsen SJ, Corbett DC, Sazer DW, Fortin CL, Zaita AJ, Greenfield PT, Calafat NJ, Gounley JP, Ta AH, Johansson F, Randles A, Rosenkrantz JE, Louis-Rosenberg JD, Galie PA, Stevens KR, Miller JS | Science (New York, N.Y.) | 31048486 | Science | 2019 May 3 |
| Computational Framework to Evaluate the Hydrodynamics of Cell Scaffold Geometries. | Puleri DF, Roychowdhury S, Ames J, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 33018467 | Annu Int Conf IEEE Eng Med Biol Soc | 2020 Jul |
| Computational modelling of perivascular-niche dynamics for the optimization of treatment schedules for glioblastoma. | Randles A, Wirsching HG, Dean JA, Cheng YK, Emerson S, Pattwell SS, Holland EC, Michor F | Nature biomedical engineering | 33864039 | Nat Biomed Eng | 2021 Apr |
| Investigating the Interaction Between Circulating Tumor Cells and Local Hydrodynamics via Experiment and Simulations. | Pepona M, Balogh P, Puleri DF, Hynes WF, Robertson C, Dubbin K, Alvarado J, Moya ML, Randles A | Cellular and molecular bioengineering | 33184581 | Cell Mol Bioeng | 2020 Oct |
| Propagation pattern for moment representation of the lattice Boltzmann method. | Gounley J, Vardhan M, Draeger EW, Valero-Lara P, Moore SV, Randles A | IEEE transactions on parallel and distributed systems : a publication of the IEEE Computer Society | 35498162 | IEEE Trans Parallel Distrib Syst | 2022 Mar |
| A Framework for Comparing Vascular Hemodynamics at Different Points in Time. | Gounley J, Vardhan M, Randles A | Computer physics communications | 30504967 | Comput Phys Commun | 2019 Feb |
| Non-invasive characterization of complex coronary lesions. | Vardhan M, Gounley J, Chen SJ, Chi EC, Kahn AM, Leopold JA, Randles A | Scientific reports | 33854076 | Sci Rep | 2021 Apr 14 |
| Localization of Rolling and Firm-Adhesive Interactions Between Circulating Tumor Cells and the Microvasculature Wall. | Dabagh M, Gounley J, Randles A | Cellular and molecular bioengineering | 32175027 | Cell Mol Bioeng | 2020 Apr |
| Accelerating massively parallel hemodynamic models of coarctation of the aorta using neural networks. | Feiger B, Gounley J, Adler D, Leopold JA, Draeger EW, Chaudhury R, Ryan J, Pathangey G, Winarta K, Frakes D, Michor F, Randles A | Scientific reports | 32528104 | Sci Rep | 2020 Jun 11 |
| Rapid Ventilator Splitting During COVID-19 Pandemic Using 3D Printed Devices and Numerical Modeling of 200 Million Patient Specific Air Flow Scenarios. | Bishawi M, Kaplan M, Chidyagwai S, Cappiello J, Cherry A, MacLeod D, Gall K, Evans N, Kim M, Shaha R, Whittle J, Hollidge M, Truskey G, Randles A | Research square | 32818206 | Res Sq | 2020 Aug 12 |
| Modeling the effect of patient size on cerebral perfusion during veno-arterial extracorporeal membrane oxygenation. | Feiger B, Jensen CW, Bryner BS, Segars WP, Randles A | Perfusion | 37395266 | Perfusion | 2024 Oct |
| Development of an oral once-weekly drug delivery system for HIV antiretroviral therapy. | Kirtane AR, Abouzid O, Minahan D, Bensel T, Hill AL, Selinger C, Bershteyn A, Craig M, Mo SS, Mazdiyasni H, Cleveland C, Rogner J, Lee YL, Booth L, Javid F, Wu SJ, Grant T, Bellinger AM, Nikolic B, Hayward A, Wood L, Eckhoff PA, Nowak MA, Langer R, Traverso G | Nature communications | 29317618 | Nat Commun | 2018 Jan 9 |
| Evolution and emergence of infectious diseases in theoretical and real-world networks. | Leventhal GE, Hill AL, Nowak MA, Bonhoeffer S | Nature communications | 25592476 | Nat Commun | 2015 Jan 16 |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe A, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 33140067 | medRxiv | 2021 Jan 19 |
| Real-Time Predictions of Reservoir Size and Rebound Time during Antiretroviral Therapy Interruption Trials for HIV. | Hill AL, Rosenbloom DI, Goldstein E, Hanhauser E, Kuritzkes DR, Siliciano RF, Henrich TJ | PLoS pathogens | 27119536 | PLoS Pathog | 2016 Apr |
| Mathematical Models of HIV Latency. | Hill AL | Current topics in microbiology and immunology | 29164341 | Curr Top Microbiol Immunol | 2018 |
| Vaccine failure mode determines population-level impact of vaccination campaigns during epidemics. | Lee DI, Nande A, Anderson TL, Levy MZ, Hill AL | Journal of the Royal Society, Interface | 39965640 | J R Soc Interface | 2025 Feb |
| Designing and Interpreting Limiting Dilution Assays: General Principles and Applications to the Latent Reservoir for Human Immunodeficiency Virus-1. | Rosenbloom DI, Elliott O, Hill AL, Henrich TJ, Siliciano JM, Siliciano RF | Open forum infectious diseases | 26478893 | Open Forum Infect Dis | 2015 Dec |
| An upper bound for the half-removal time of neutrophils from circulation. | Craig M, Humphries AR, Mackey MC | Blood | 27578816 | Blood | 2016 Oct 13 |
| Expanded cellular clones carrying replication-competent HIV-1 persist, wax, and wane. | Wang Z, Gurule EE, Brennan TP, Gerold JM, Kwon KJ, Hosmane NN, Kumar MR, Beg SA, Capoferri AA, Ray SC, Ho YC, Hill AL, Siliciano JD, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 29483265 | Proc Natl Acad Sci U S A | 2018 Mar 13 |
| Insight into treatment of HIV infection from viral dynamics models. | Hill AL, Rosenbloom DIS, Nowak MA, Siliciano RF | Immunological reviews | 30129208 | Immunol Rev | 2018 Sep |
| Re-evaluating evolution in the HIV reservoir. | Rosenbloom DIS, Hill AL, Laskey SB, Siliciano RF | Nature | 29168805 | Nature | 2017 Nov 22 |
| Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance. | Moreno-Gamez S, Hill AL, Rosenbloom DI, Petrov DA, Nowak MA, Pennings PS | Proceedings of the National Academy of Sciences of the United States of America | 26038564 | Proc Natl Acad Sci U S A | 2015 Jun 2 |
| Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1. | Hill AL, Rosenbloom DI, Fu F, Nowak MA, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 25097264 | Proc Natl Acad Sci U S A | 2014 Sep 16 |
| Dynamics of bed bug infestations and control under disclosure policies. | Xie S, Hill AL, Rehmann CR, Levy MZ | Proceedings of the National Academy of Sciences of the United States of America | 30833386 | Proc Natl Acad Sci U S A | 2019 Mar 26 |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | PLoS computational biology | 33534808 | PLoS Comput Biol | 2021 Feb |
| A Blueprint for Identifying Phenotypes and Drug Targets in Complex Disorders with Empirical Dynamics. | Krieger MS, Moreau JM, Zhang H, Chien M, Zehnder JL, Craig M | Patterns (New York, N.Y.) | 33336196 | Patterns (N Y) | 2020 Dec 11 |
| Crowding and the shape of COVID-19 epidemics. | Rader B, Scarpino SV, Nande A, Hill AL, Adlam B, Reiner RC, Pigott DM, Gutierrez B, Zarebski AE, Shrestha M, Brownstein JS, Castro MC, Dye C, Tian H, Pybus OG, Kraemer MUG | Nature medicine | 33020651 | Nat Med | 2020 Dec |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 36523404 | medRxiv | 2022 Dec 6 |
| Towards Quantitative Systems Pharmacology Models of Chemotherapy-Induced Neutropenia. | Craig M | CPT: pharmacometrics & systems pharmacology | 28418603 | CPT Pharmacometrics Syst Pharmacol | 2017 May |
| Life cycle synchronization is a viral drug resistance mechanism. | Neagu IA, Olejarz J, Freeman M, Rosenbloom DIS, Nowak MA, Hill AL | PLoS computational biology | 29447150 | PLoS Comput Biol | 2018 Feb |
| Insufficient Evidence for Rare Activation of Latent HIV in the Absence of Reservoir-Reducing Interventions. | Hill AL, Rosenbloom DI, Siliciano JD, Siliciano RF | PLoS pathogens | 27560936 | PLoS Pathog | 2016 Aug |
| Ad26/MVA therapeutic vaccination with TLR7 stimulation in SIV-infected rhesus monkeys. | Borducchi EN, Cabral C, Stephenson KE, Liu J, Abbink P, Ng'ang'a D, Nkolola JP, Brinkman AL, Peter L, Lee BC, Jimenez J, Jetton D, Mondesir J, Mojta S, Chandrashekar A, Molloy K, Alter G, Gerold JM, Hill AL, Lewis MG, Pau MG, Schuitemaker H, Hesselgesser J, Geleziunas R, Kim JH, Robb ML, Michael NL, Barouch DH | Nature | 27841870 | Nature | 2016 Dec 8 |
| Modeling HIV persistence and cure studies. | Hill AL | Current opinion in HIV and AIDS | 29916846 | Curr Opin HIV AIDS | 2018 Sep |
| Cooperative adaptation to therapy (CAT) confers resistance in heterogeneous non-small cell lung cancer. | Craig M, Kaveh K, Woosley A, Brown AS, Goldman D, Eton E, Mehta RM, Dhawan A, Arai K, Rahman MM, Chen S, Nowak MA, Goldman A | PLoS computational biology | 31449515 | PLoS Comput Biol | 2019 Aug |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 32577691 | medRxiv | 2021 Jan 15 |
| A Systematic Review of Coronavirus Disease 2019 Vaccine Efficacy and Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Disease. | Higdon MM, Wahl B, Jones CB, Rosen JG, Truelove SA, Baidya A, Nande AA, ShamaeiZadeh PA, Walter KK, Feikin DR, Patel MK, Deloria Knoll M, Hill AL | Open forum infectious diseases | 35611346 | Open Forum Infect Dis | 2022 Jun |
| Chaos synchronization and Nelder-Mead search for parameter estimation in nonlinear pharmacological systems: Estimating tumor antigenicity in a model of immunotherapy. | Pillai N, Craig M, Dokoumetzidis A, Schwartz SL, Bies R, Freedman I | Progress in biophysics and molecular biology | 29928905 | Prog Biophys Mol Biol | 2018 Nov |
| TLR7 agonists induce transient viremia and reduce the viral reservoir in SIV-infected rhesus macaques on antiretroviral therapy. | Lim SY, Osuna CE, Hraber PT, Hesselgesser J, Gerold JM, Barnes TL, Sanisetty S, Seaman MS, Lewis MG, Geleziunas R, Miller MD, Cihlar T, Lee WA, Hill AL, Whitney JB | Science translational medicine | 29720451 | Sci Transl Med | 2018 May 2 |
| Ex vivo analysis identifies effective HIV-1 latency-reversing drug combinations. | Laird GM, Bullen CK, Rosenbloom DI, Martin AR, Hill AL, Durand CM, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 25822022 | J Clin Invest | 2015 May |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe AH, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | Nature communications | 33859196 | Nat Commun | 2021 Apr 15 |
| Antigen-driven clonal selection shapes the persistence of HIV-1-infected CD4+ T cells in vivo. | Simonetti FR, Zhang H, Soroosh GP, Duan J, Rhodehouse K, Hill AL, Beg SA, McCormick K, Raymond HE, Nobles CL, Everett JK, Kwon KJ, White JA, Lai J, Margolick JB, Hoh R, Deeks SG, Bushman FD, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 33301425 | J Clin Invest | 2021 Feb 1 |
| Population structure across scales facilitates coexistence and spatial heterogeneity of antibiotic-resistant infections. | Krieger MS, Denison CE, Anderson TL, Nowak MA, Hill AL | PLoS computational biology | 32628660 | PLoS Comput Biol | 2020 Jul |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | Epidemics | 37556994 | Epidemics | 2023 Sep |
| Air pollution health impacts: the knowns and unknowns for reliable global burden calculations. | Hystad P, Yusuf S, Brauer M | Cardiovascular research | 32267925 | Cardiovasc Res | 2020 Sep 1 |
| Associations of outdoor fine particulate air pollution and cardiovascular disease in 157 436 individuals from 21 high-income, middle-income, and low-income countries (PURE): a prospective cohort study. | Hystad P, Larkin A, Rangarajan S, AlHabib KF, Avezum Á, Calik KBT, Chifamba J, Dans A, Diaz R, du Plessis JL, Gupta R, Iqbal R, Khatib R, Kelishadi R, Lanas F, Liu Z, Lopez-Jaramillo P, Nair S, Poirier P, Rahman O, Rosengren A, Swidan H, Tse LA, Wei L, Wielgosz A, Yeates K, Yusoff K, Zatoński T, Burnett R, Yusuf S, Brauer M | The Lancet. Planetary health | 32559440 | Lancet Planet Health | 2020 Jun |
| Long-term exposure to outdoor and household air pollution and blood pressure in the Prospective Urban and Rural Epidemiological (PURE) study. | Arku RE, Brauer M, Ahmed SH, AlHabib KF, Avezum Á, Bo J, Choudhury T, Dans AM, Gupta R, Iqbal R, Ismail N, Kelishadi R, Khatib R, Koon T, Kumar R, Lanas F, Lear SA, Wei L, Lopez-Jaramillo P, Mohan V, Poirier P, Puoane T, Rangarajan S, Rosengren A, Soman B, Caklili OT, Yang S, Yeates K, Yin L, Yusoff K, Zatoński T, Yusuf S, Hystad P | Environmental pollution (Barking, Essex : 1987) | 32146361 | Environ Pollut | 2020 Jul |
| Global Land Use Regression Model for Nitrogen Dioxide Air Pollution. | Larkin A, Geddes JA, Martin RV, Xiao Q, Liu Y, Marshall JD, Brauer M, Hystad P | Environmental science & technology | 28520422 | Environ Sci Technol | 2017 Jun 20 |
| Relationships between Changes in Urban Characteristics and Air Quality in East Asia from 2000 to 2010. | Larkin A, van Donkelaar A, Geddes JA, Martin RV, Hystad P | Environmental science & technology | 27442110 | Environ Sci Technol | 2016 Sep 6 |
| Adverse health impacts of cooking with kerosene: A multi-country analysis within the Prospective Urban and Rural Epidemiology Study. | Arku RE, Brauer M, Duong M, Wei L, Hu B, Ah Tse L, Mony PK, Lakshmi PVM, Pillai RK, Mohan V, Yeates K, Kruger L, Rangarajan S, Koon T, Yusuf S, Hystad P, PURE (Prospective Urban and Rural Epidemiological) Study investigators | Environmental research | 32798956 | Environ Res | 2020 Sep |
| Multinational prediction of household and personal exposure to fine particulate matter (PM(2.5)) in the PURE cohort study. | Shupler M, Hystad P, Birch A, Chu YL, Jeronimo M, Miller-Lionberg D, Gustafson P, Rangarajan S, Mustaha M, Heenan L, Seron P, Lanas F, Cazor F, Jose Oliveros M, Lopez-Jaramillo P, Camacho PA, Otero J, Perez M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Liu Z, Wu S, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, PURE-AIR study investigators | Environment international | 34915352 | Environ Int | 2022 Jan 15 |
| Health Effects of Household Solid Fuel Use: Findings from 11 Countries within the Prospective Urban and Rural Epidemiology Study. | Hystad P, Duong M, Brauer M, Larkin A, Arku R, Kurmi OP, Fan WQ, Avezum A, Azam I, Chifamba J, Dans A, du Plessis JL, Gupta R, Kumar R, Lanas F, Liu Z, Lu Y, Lopez-Jaramillo P, Mony P, Mohan V, Mohan D, Nair S, Puoane T, Rahman O, Lap AT, Wang Y, Wei L, Yeates K, Rangarajan S, Teo K, Yusuf S, [on behalf of Prospective Urban and Rural Epidemiological (PURE) Study investigators] | Environmental health perspectives | 31067132 | Environ Health Perspect | 2019 May |
| Household and personal air pollution exposure measurements from 120 communities in eight countries: results from the PURE-AIR study. | Shupler M, Hystad P, Birch A, Miller-Lionberg D, Jeronimo M, Arku RE, Chu YL, Mushtaha M, Heenan L, Rangarajan S, Seron P, Lanas F, Cazor F, Lopez-Jaramillo P, Camacho PA, Perez M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Hu B, Liu X, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, PURE-AIR study | The Lancet. Planetary health | 33038319 | Lancet Planet Health | 2020 Oct |
| Personal and household PM(2.5) and black carbon exposure measures and respiratory symptoms in 8 low- and middle-income countries. | Wang Y, Shupler M, Birch A, Chu YL, Jeronimo M, Rangarajan S, Mustaha M, Heenan L, Seron P, Saavedra N, Oliveros MJ, Lopez-Jaramillo P, Camacho PA, Otero J, Perez-Mayorga M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Liu Z, Cheng X, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, Hystad P, PURE-AIR study investigators | Environmental research | 35526584 | Environ Res | 2022 Sep |
| Household Air Pollution and Adult Lung Function Change, Respiratory Disease, and Mortality across Eleven Low- and Middle-Income Countries from the PURE Study. | Wang Y, Duong M, Brauer M, Rangarajan S, Dans A, Lanas F, Lopez-Jaramillo P, Puoane T, Yeates K, Chifamba J, Yusuf R, Liu Z, Li Y, Tse LA, Mohan D, Gupta R, Nair S, Lakshmi P, Iqbal R, Anto T, Yusuf S, Hystad P | Environmental health perspectives | 37126654 | Environ Health Perspect | 2023 Apr |
| Urbanization and physical activity in the global Prospective Urban and Rural Epidemiology study. | Boakye K, Bovbjerg M, Schuna J Jr, Branscum A, Varma RP, Ismail R, Barbarash O, Dominguez J, Altuntas Y, Anjana RM, Yusuf R, Kelishadi R, Lopez-Jaramillo P, Iqbal R, Serón P, Rosengren A, Poirier P, Lakshmi PVM, Khatib R, Zatonska K, Hu B, Yin L, Wang C, Yeates K, Chifamba J, Alhabib KF, Avezum Á, Dans A, Lear SA, Yusuf S, Hystad P | Scientific reports | 36609613 | Sci Rep | 2023 Jan 6 |
| Towards Personal Exposures: How Technology Is Changing Air Pollution and Health Research. | Larkin A, Hystad P | Current environmental health reports | 28983874 | Curr Environ Health Rep | 2017 Dec |
| Elevated blood pressure and household solid fuel use in premenopausal women: Analysis of 12 Demographic and Health Surveys (DHS) from 10 countries. | Arku RE, Ezzati M, Baumgartner J, Fink G, Zhou B, Hystad P, Brauer M | Environmental research | 29107891 | Environ Res | 2018 Jan |
| Workflow for Comparison of Chemical and Biological Metrics of Filter Collected PM(2.5). | Roper C, Perez A, Barrett D, Hystad P, Massey Simonich SL, Tanguay RL | Atmospheric environment (Oxford, England : 1994) | 32313426 | Atmos Environ (1994) | 2020 Apr 1 |
| Interaction of Depression and Unhealthy Diets on the Risk of Cardiovascular Diseases and All-Cause Mortality in the Chinese Population: A PURE Cohort Substudy. | Lang X, Liu Z, Islam S, Han G, Rangarajan S, Tse LA, Mushtaha M, Wang J, Hu L, Qiang D, Zhu Y, Yusuf S, Lin Y, Hu B, On Behalf Of The Pure-China Investigators | Nutrients | 36501202 | Nutrients | 2022 Dec 5 |
| Modifiable risk factors, cardiovascular disease, and mortality in 155 722 individuals from 21 high-income, middle-income, and low-income countries (PURE): a prospective cohort study. | Yusuf S, Joseph P, Rangarajan S, Islam S, Mente A, Hystad P, Brauer M, Kutty VR, Gupta R, Wielgosz A, AlHabib KF, Dans A, Lopez-Jaramillo P, Avezum A, Lanas F, Oguz A, Kruger IM, Diaz R, Yusoff K, Mony P, Chifamba J, Yeates K, Kelishadi R, Yusufali A, Khatib R, Rahman O, Zatonska K, Iqbal R, Wei L, Bo H, Rosengren A, Kaur M, Mohan V, Lear SA, Teo KK, Leong D, O'Donnell M, McKee M, Dagenais G | Lancet (London, England) | 31492503 | Lancet | 2020 Mar 7 |
| Household, Community, Sub-National and Country-level Predictors of Primary Cooking Fuel Switching in Nine Countries from the PURE Study. | Shupler M, Hystad P, Gustafson P, Rangarajan S, Mushtaha M, Jayachtria KG, Mony PK, Mohan D, Kumar P, Lakshmi P, Sagar V, Gupta R, Mohan I, Nair S, Varma RP, Li W, Hu B, You K, Ncube T, Ncube B, Chifamba J, West N, Yeates K, Iqbal R, Khawaja R, Yusuf R, Khan A, Seron P, Lanas F, Lopez-Jaramillo P, Camacho PA, Puoane T, Yusuf S, Brauer M | Environmental research letters : ERL [Web site] | 33777170 | Environ Res Lett | 2019 Aug |
| Analysis of black carbon on filters by image-based reflectance. | Jeronimo M, Stewart Q, Weakley AT, Giacomo J, Zhang X, Hyslop N, Dillner AM, Shupler M, Brauer M | Atmospheric environment (Oxford, England : 1994) | 32095102 | Atmos Environ (1994) | 2020 Feb 15 |
| Characterizing exposure to household air pollution within the Prospective Urban Rural Epidemiology (PURE) study. | Arku RE, Birch A, Shupler M, Yusuf S, Hystad P, Brauer M | Environment international | 29567495 | Environ Int | 2018 May |
| Successful Scene Encoding in Presymptomatic Early-Onset Alzheimer's Disease. | Quiroz YT, Willment KC, Castrillon G, Muniz M, Lopera F, Budson A, Stern CE | Journal of Alzheimer's disease : JAD | 26401774 | J Alzheimers Dis | 2015 |
| Association Between Amyloid and Tau Accumulation in Young Adults With Autosomal Dominant Alzheimer Disease. | Quiroz YT, Sperling RA, Norton DJ, Baena A, Arboleda-Velasquez JF, Cosio D, Schultz A, Lapoint M, Guzman-Velez E, Miller JB, Kim LA, Chen K, Tariot PN, Lopera F, Reiman EM, Johnson KA | JAMA neurology | 29435558 | JAMA Neurol | 2018 May 1 |
| Association of subjective cognitive decline with markers of brain pathology in preclinical autosomal dominant Alzheimer's disease. | Gatchel JR, Lopera F, Norton DJ, Baena A, Guzman-Velez E, Sanchez JS, d'Oleire Uquillas F, Schultz A, Vannini P, Artola A, Amariglio RE, Rentz DM, Tariot PN, Reiman EM, Johnson KA, Sperling RA, Marshall GA, Quiroz YT | Journal of neurology, neurosurgery, and psychiatry | 31874859 | J Neurol Neurosurg Psychiatry | 2020 Mar |
| Associations between plasma neurofilament light, in vivo brain pathology, and cognition in non-demented individuals with autosomal-dominant Alzheimer's disease. | Guzmán-Vélez E, Zetterberg H, Fox-Fuller JT, Vila-Castelar C, Sanchez JS, Baena A, Garcia-Ospina G, Aguillon D, Pardilla-Delgado E, Gatchel JR, Sperling RA, Johnson K, Reiman EM, Blennow K, Lopera F, Quiroz YT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 33527648 | Alzheimers Dement | 2021 May |
| Global Cardiovascular Risk Profile and Cerebrovascular Abnormalities in Presymptomatic Individuals with CADASIL or Autosomal Dominant Alzheimer's Disease. | Schoemaker D, Velilla-Jimenez L, Zuluaga Y, Baena A, Ospina C, Bocanegra Y, Alvarez S, Ochoa-Escudero M, Guzmán-Vélez E, Martinez J, Lopera F, Arboleda-Velasquez JF, Quiroz YT | Journal of Alzheimer's disease : JAD | 34092645 | J Alzheimers Dis | 2021 |
| Plasma neurofilament light chain in the presenilin 1 E280A autosomal dominant Alzheimer's disease kindred: a cross-sectional and longitudinal cohort study. | Quiroz YT, Zetterberg H, Reiman EM, Chen Y, Su Y, Fox-Fuller JT, Garcia G, Villegas A, Sepulveda-Falla D, Villada M, Arboleda-Velasquez JF, Guzmán-Vélez E, Vila-Castelar C, Gordon BA, Schultz SA, Protas HD, Ghisays V, Giraldo M, Tirado V, Baena A, Munoz C, Rios-Romenets S, Tariot PN, Blennow K, Lopera F | The Lancet. Neurology | 32470423 | Lancet Neurol | 2020 Jun |
| Subjective memory complaints in preclinical autosomal dominant Alzheimer disease. | Norton DJ, Amariglio R, Protas H, Chen K, Aguirre-Acevedo DC, Pulsifer B, Castrillon G, Tirado V, Munoz C, Tariot P, Langbaum JB, Reiman EM, Lopera F, Sperling RA, Quiroz YT | Neurology | 28878053 | Neurology | 2017 Oct 3 |
| Cortical thickness across the lifespan in a Colombian cohort with autosomal-dominant Alzheimer's disease: A cross-sectional study. | Fox-Fuller JT, Torrico-Teave H, d'Oleire Uquillas F, Chen K, Su Y, Chen Y, Brickhouse M, Sanchez JS, Aguero C, Jacobs HIL, Hampton O, Guzmán-Vélez E, Vila-Castelar C, Aguirre-Acevedo DC, Baena A, Artola A, Martinez J, Pluim CF, Alvarez S, Ochoa-Escudero M, Reiman EM, Sperling RA, Lopera F, Johnson KA, Dickerson BC, Quiroz YT | Alzheimer's & dementia (Amsterdam, Netherlands) | 34541287 | Alzheimers Dement (Amst) | 2021 |
| Olfactory Function and Markers of Brain Pathology in Non-Demented Individuals with Autosomal Dominant Alzheimer's Disease. | Ramirez-Gomez L, Albers MW, Baena A, Vila-Castelar C, Fox-Fuller JT, Sanchez J, Jain F, Albers AD, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 35694921 | J Alzheimers Dis | 2022 |
| A public resource of baseline data from the Alzheimer's Prevention Initiative Autosomal-Dominant Alzheimer's Disease Trial. | Reiman EM, Pruzin JJ, Rios-Romenets S, Brown C, Giraldo M, Acosta-Baena N, Tobon C, Hu N, Chen Y, Ghisays V, Enos J, Goradia DD, Lee W, Luo J, Malek-Ahmadi M, Protas H, Thomas RG, Chen K, Su Y, Boker C, Mastroeni D, Alvarez S, Quiroz YT, Langbaum JB, Sink KM, Lopera F, Tariot PN, API ADAD Colombia Trial Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 36373344 | Alzheimers Dement | 2023 May |
| Cognitive Decline in a Colombian Kindred With Autosomal Dominant Alzheimer Disease: A Retrospective Cohort Study. | Aguirre-Acevedo DC, Lopera F, Henao E, Tirado V, Muñoz C, Giraldo M, Bangdiwala SI, Reiman EM, Tariot PN, Langbaum JB, Quiroz YT, Jaimes F | JAMA neurology | 26902171 | JAMA Neurol | 2016 Apr |
| A Three-Factor Structure of Cognitive Functioning Among Unimpaired Carriers and Non-Carriers of Autosomal-Dominant Alzheimer's Disease. | Guzmán-Vélez E, Jaimes S, Aguirre-Acevedo DC, Norton DJ, Papp KV, Amariglio R, Rentz D, Baena A, Henao E, Tirado V, Muñoz C, Giraldo M, Sperling RA, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 30040714 | J Alzheimers Dis | 2018 |
| Perspectives on ethnic and racial disparities in Alzheimer's disease and related dementias: Update and areas of immediate need. | Babulal GM, Quiroz YT, Albensi BC, Arenaza-Urquijo E, Astell AJ, Babiloni C, Bahar-Fuchs A, Bell J, Bowman GL, Brickman AM, Chételat G, Ciro C, Cohen AD, Dilworth-Anderson P, Dodge HH, Dreux S, Edland S, Esbensen A, Evered L, Ewers M, Fargo KN, Fortea J, Gonzalez H, Gustafson DR, Head E, Hendrix JA, Hofer SM, Johnson LA, Jutten R, Kilborn K, Lanctôt KL, Manly JJ, Martins RN, Mielke MM, Morris MC, Murray ME, Oh ES, Parra MA, Rissman RA, Roe CM, Santos OA, Scarmeas N, Schneider LS, Schupf N, Sikkes S, Snyder HM, Sohrabi HR, Stern Y, Strydom A, Tang Y, Terrera GM, Teunissen C, Melo van Lent D, Weinborn M, Wesselman L, Wilcock DM, Zetterberg H, O'Bryant SE, International Society to Advance Alzheimer's Research and Treatment, Alzheimer's Association | Alzheimer's & dementia : the journal of the Alzheimer's Association | 30555031 | Alzheimers Dement | 2019 Feb |
| The Latin American Spanish version of the Face-Name Associative Memory Exam is sensitive to cognitive and pathological changes in preclinical autosomal dominant Alzheimer's disease. | Vila-Castelar C, Muñoz N, Papp KV, Amariglio RE, Baena A, Guzmán-Vélez E, Bocanegra Y, Sanchez JS, Reiman EM, Johnson KA, Sperling RA, Lopera F, Rentz DM, Quiroz YT | Alzheimer's research & therapy | 32912283 | Alzheimers Res Ther | 2020 Sep 10 |
| Examining Sex Differences in Markers of Cognition and Neurodegeneration in Autosomal Dominant Alzheimer's Disease: Preliminary Findings from the Colombian Alzheimer's Prevention Initiative Biomarker Study. | Vila-Castelar C, Guzmán-Vélez E, Pardilla-Delgado E, Buckley RF, Bocanegra Y, Baena A, Fox-Fuller JT, Tirado V, Muñoz C, Giraldo M, Acosta-Baena N, Rios-Romenets S, Langbaum JB, Tariot PN, Lopera F, Reiman EM, Quiroz YT | Journal of Alzheimer's disease : JAD | 32925067 | J Alzheimers Dis | 2020 |
| Sex differences in cognitive resilience in preclinical autosomal-dominant Alzheimer's disease carriers and non-carriers: Baseline findings from the API ADAD Colombia Trial. | Vila-Castelar C, Tariot PN, Sink KM, Clayton D, Langbaum JB, Thomas RG, Chen Y, Su Y, Chen K, Hu N, Giraldo-Chica M, Tobón C, Acosta-Baena N, Luna E, Londoño M, Ospina P, Tirado V, Muñoz C, Henao E, Bocanegra Y, Alvarez S, Rios-Romenets S, Ghisays V, Goradia D, Lee W, Luo J, Malek-Ahmadi MH, Protas HD, Lopera F, Reiman EM, Quiroz YT, API ADAD Colombia Trial Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35103388 | Alzheimers Dement | 2022 Nov |
| Genetic origin of a large family with a novel PSEN1 mutation (Ile416Thr). | Ramirez Aguilar L, Acosta-Uribe J, Giraldo MM, Moreno S, Baena A, Alzate D, Cuastumal R, Aguillón D, Madrigal L, Saldarriaga A, Navarro A, Garcia GP, Aguirre-Acevedo DC, Geier EG, Cochran JN, Quiroz YT, Myers RM, Yokoyama JS, Kosik KS, Lopera F | Alzheimer's & dementia : the journal of the Alzheimer's Association | 30745123 | Alzheimers Dement | 2019 May |
| Longitudinal Association of Depression Symptoms With Cognition and Cortical Amyloid Among Community-Dwelling Older Adults. | Gatchel JR, Rabin JS, Buckley RF, Locascio JJ, Quiroz YT, Yang HS, Vannini P, Amariglio RE, Rentz DM, Properzi M, Donovan NJ, Blacker D, Johnson KA, Sperling RA, Marshall GA, Harvard Aging Brain Study | JAMA network open | 31397865 | JAMA Netw Open | 2019 Aug 2 |
| The cortical origin and initial spread of medial temporal tauopathy in Alzheimer's disease assessed with positron emission tomography. | Sanchez JS, Becker JA, Jacobs HIL, Hanseeuw BJ, Jiang S, Schultz AP, Properzi MJ, Katz SR, Beiser A, Satizabal CL, O'Donnell A, DeCarli C, Killiany R, El Fakhri G, Normandin MD, Gómez-Isla T, Quiroz YT, Rentz DM, Sperling RA, Seshadri S, Augustinack J, Price JC, Johnson KA | Science translational medicine | 33472953 | Sci Transl Med | 2021 Jan 20 |
| Effect of apolipoprotein genotype and educational attainment on cognitive function in autosomal dominant Alzheimer's disease. | Langella S, Barksdale NG, Vasquez D, Aguillon D, Chen Y, Su Y, Acosta-Baena N, Acosta-Uribe J, Baena AY, Garcia-Ospina G, Giraldo-Chica M, Tirado V, Muñoz C, Ríos-Romenets S, Guzman-Martínez C, Oliveira G, Yang HS, Vila-Castelar C, Pruzin JJ, Ghisays V, Arboleda-Velasquez JF, Kosik KS, Reiman EM, Lopera F, Quiroz YT | Nature communications | 37612284 | Nat Commun | 2023 Aug 23 |
| Consideration of sex and gender in Alzheimer's disease and related disorders from a global perspective. | Mielke MM, Aggarwal NT, Vila-Castelar C, Agarwal P, Arenaza-Urquijo EM, Brett B, Brugulat-Serrat A, DuBose LE, Eikelboom WS, Flatt J, Foldi NS, Franzen S, Gilsanz P, Li W, McManus AJ, van Lent DM, Milani SA, Shaaban CE, Stites SD, Sundermann E, Suryadevara V, Trani JF, Turner AD, Vonk JMJ, Quiroz YT, Babulal GM, Diversity and Disparity Professional Interest Area Sex and Gender Special Interest Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35394117 | Alzheimers Dement | 2022 Dec |
| Validation of the Latin American Spanish version of the face-name associative memory exam in a Colombian Sample. | Vila-Castelar C, Papp KV, Amariglio RE, Torres VL, Baena A, Gomez D, Rendon J, Samaroo A, Lopera F, Rentz DM, Quiroz YT | The Clinical neuropsychologist | 31851865 | Clin Neuropsychol | 2020 Dec |
| Association Between Visual Memory and In Vivo Amyloid and Tau Pathology in Preclinical Autosomal Dominant Alzheimer's Disease. | Bocanegra Y, Fox-Fuller JT, Baena A, Guzmán-Vélez E, Vila-Castelar C, Martínez J, Torrico-Teave H, Lopera F, Quiroz YT | Journal of the International Neuropsychological Society : JINS | 32762790 | J Int Neuropsychol Soc | 2021 Jan |
| Normative data stratified by age and education for a Spanish neuropsychological test battery: Results from the Colombian Alzheimer's prevention initiative registry. | Torres VL, Vila-Castelar C, Bocanegra Y, Baena A, Guzmán-Vélez E, Aguirre-Acevedo DC, Tirado V, Munoz C, Henao E, Moreno S, Giraldo M, Acosta N, Rios Romenets S, Langbaum JB, Cho W, Reiman EM, Tariot PN, Rosselli M, Quiroz YT, Lopera F | Applied neuropsychology. Adult | 31230490 | Appl Neuropsychol Adult | 2021 Mar-Apr |
| Associations between subregional thalamic volume and brain pathology in autosomal dominant Alzheimer's disease. | Pardilla-Delgado E, Torrico-Teave H, Sanchez JS, Ramirez-Gomez LA, Baena A, Bocanegra Y, Vila-Castelar C, Fox-Fuller JT, Guzmán-Vélez E, Martínez J, Alvarez S, Ochoa-Escudero M, Lopera F, Quiroz YT | Brain communications | 34095834 | Brain Commun | 2021 |
| Neuroticism Is Associated with Tau Pathology in Cognitively Unimpaired Individuals with Autosomal Dominant Alzheimer's Disease. | Baena A, Bocanegra Y, Torres V, Vila-Castelar C, Guzmán-Vélez E, Fox-Fuller JT, Gatchel JR, Sánchez J, Pluim CF, Ramirez-Gómez L, Martínez J, Pineda D, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 34219716 | J Alzheimers Dis | 2021 |
| PET evidence of preclinical cerebellar amyloid plaque deposition in autosomal dominant Alzheimer's disease-causing Presenilin-1 E280A mutation carriers. | Ghisays V, Lopera F, Goradia DD, Protas HD, Malek-Ahmadi MH, Chen Y, Devadas V, Luo J, Lee W, Baena A, Bocanegra Y, Guzmán-Vélez E, Pardilla-Delgado E, Vila-Castelar C, Fox-Fuller JT, Hu N, Clayton D, Thomas RG, Alvarez S, Espinosa A, Acosta-Baena N, Giraldo MM, Rios-Romenets S, Langbaum JB, Chen K, Su Y, Tariot PN, Quiroz YT, Reiman EM, API ADAD Colombia Trial Group | NeuroImage. Clinical | 34252876 | Neuroimage Clin | 2021 |
| Testing the amyloid cascade hypothesis: Prevention trials in autosomal dominant Alzheimer disease. | Levin J, Vöglein J, Quiroz YT, Bateman RJ, Ghisays V, Lopera F, McDade E, Reiman E, Tariot PN, Morris JC | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35212149 | Alzheimers Dement | 2022 Dec |
| Waning locus coeruleus integrity precedes cortical tau accrual in preclinical autosomal dominant Alzheimer's disease. | Jacobs HIL, Becker JA, Kwong K, Munera D, Ramirez-Gomez L, Engels-Domínguez N, Sanchez JS, Vila-Castelar C, Baena A, Sperling RA, Johnson KA, Lopera F, Quiroz YT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35298083 | Alzheimers Dement | 2023 Jan |
| Memory for Semantically Related Objects Differentiates Cognitively Unimpaired Autosomal Dominant Mutation Carriers from Non-Carrier Family Members. | Fox-Fuller JT, Martinez JE, Baena A, Londono N, Munera D, Noriega D, Vila-Castelar C, Aduen PA, Lopera F, Cronin-Golomb A, Quiroz YT | The journal of prevention of Alzheimer's disease | 36946459 | J Prev Alzheimers Dis | 2023 |
| APOE Christchurch-mimetic therapeutic antibody reduces APOE-mediated toxicity and tau phosphorylation. | Marino C, Perez-Corredor P, O'Hare M, Heuer A, Chmielewska N, Gordon H, Chandrahas AS, Gonzalez-Buendia L, Delgado-Tirado S, Doan TH, Vanderleest TE, Arevalo-Alquichire S, Obar RA, Ortiz-Cordero C, Villegas A, Sepulveda-Falla D, Kim LA, Lopera F, Mahley R, Huang Y, Quiroz YT, Arboleda-Velasquez JF | Alzheimer's & dementia : the journal of the Alzheimer's Association | 37791598 | Alzheimers Dement | 2024 Feb |
| Resistance to autosomal dominant Alzheimer's disease in an APOE3 Christchurch homozygote: a case report. | Arboleda-Velasquez JF, Lopera F, O'Hare M, Delgado-Tirado S, Marino C, Chmielewska N, Saez-Torres KL, Amarnani D, Schultz AP, Sperling RA, Leyton-Cifuentes D, Chen K, Baena A, Aguillon D, Rios-Romenets S, Giraldo M, Guzmán-Vélez E, Norton DJ, Pardilla-Delgado E, Artola A, Sanchez JS, Acosta-Uribe J, Lalli M, Kosik KS, Huentelman MJ, Zetterberg H, Blennow K, Reiman RA, Luo J, Chen Y, Thiyyagura P, Su Y, Jun GR, Naymik M, Gai X, Bootwalla M, Ji J, Shen L, Miller JB, Kim LA, Tariot PN, Johnson KA, Reiman EM, Quiroz YT | Nature medicine | 31686034 | Nat Med | 2019 Nov |
| Striatal amyloid is associated with tauopathy and memory decline in familial Alzheimer's disease. | Hanseeuw BJ, Lopera F, Sperling RA, Norton DJ, Guzman-Velez E, Baena A, Pardilla-Delgado E, Schultz AP, Gatchel J, Jin D, Chen K, Reiman EM, Johnson KA, Quiroz YT | Alzheimer's research & therapy | 30717814 | Alzheimers Res Ther | 2019 Feb 4 |
| Biological and Cognitive Markers of Presenilin1 E280A Autosomal Dominant Alzheimer's Disease: A Comprehensive Review of the Colombian Kindred. | Fuller JT, Cronin-Golomb A, Gatchel JR, Norton DJ, Guzmán-Vélez E, Jacobs HIL, Hanseeuw B, Pardilla-Delgado E, Artola A, Baena A, Bocanegra Y, Kosik KS, Chen K, Tariot PN, Johnson K, Sperling RA, Reiman EM, Lopera F, Quiroz YT | The journal of prevention of Alzheimer's disease | 30756118 | J Prev Alzheimers Dis | 2019 |
| Brain Imaging and Blood Biomarker Abnormalities in Children With Autosomal Dominant Alzheimer Disease: A Cross-Sectional Study. | Quiroz YT, Schultz AP, Chen K, Protas HD, Brickhouse M, Fleisher AS, Langbaum JB, Thiyyagura P, Fagan AM, Shah AR, Muniz M, Arboleda-Velasquez JF, Munoz C, Garcia G, Acosta-Baena N, Giraldo M, Tirado V, Ramírez DL, Tariot PN, Dickerson BC, Sperling RA, Lopera F, Reiman EM | JAMA neurology | 26121081 | JAMA Neurol | 2015 Aug |
| Retinal Imaging Findings in Carriers With PSEN1-Associated Early-Onset Familial Alzheimer Disease Before Onset of Cognitive Symptoms. | Armstrong GW, Kim LA, Vingopoulos F, Park JY, Garg I, Kasetty M, Silverman RF, Zeng R, Douglas VP, Lopera F, Baena A, Giraldo M, Norton D, Cronin-Golomb A, Arboleda-Velasquez JF, Quiroz YT, Miller JB | JAMA ophthalmology | 33180114 | JAMA Ophthalmol | 2021 Jan 1 |
| Longitudinal amyloid and tau accumulation in autosomal dominant Alzheimer's disease: findings from the Colombia-Boston (COLBOS) biomarker study. | Sanchez JS, Hanseeuw BJ, Lopera F, Sperling RA, Baena A, Bocanegra Y, Aguillon D, Guzmán-Vélez E, Pardilla-Delgado E, Ramirez-Gomez L, Vila-Castelar C, Martinez JE, Fox-Fuller JT, Ramos C, Ochoa-Escudero M, Alvarez S, Jacobs HIL, Schultz AP, Gatchel JR, Becker JA, Katz SR, Mayblyum DV, Price JC, Reiman EM, Johnson KA, Quiroz YT | Alzheimer's research & therapy | 33451357 | Alzheimers Res Ther | 2021 Jan 15 |
| Visual working memory for semantically related objects in healthy adults. | García-Magariño I, Fox-Fuller JT, Palacios-Navarro G, Baena A, Quiroz YT | Revista de neurologia | 33034365 | Rev Neurol | 2020 Oct 16 |
| Associative memory and in vivo brain pathology in asymptomatic presenilin-1 E280A carriers. | Guzmán-Vélez E, Martínez J, Papp K, Baena A, Vila-Castelar C, Artola A, Schultz AP, Bocanegra Y, Sanchez J, Rentz D, Tariot PN, Reiman EM, Sperling R, Johnson KA, Lopera F, Quiroz YT | Neurology | 32611637 | Neurology | 2020 Sep 8 |
| Examining Cognitive Decline Across Black and White Participants in the Harvard Aging Brain Study. | Amariglio RE, Buckley RF, Rabin JS, Papp KV, Quiroz YT, Mormino EC, Sparks KP, Johnson KA, Rentz DM, Sperling RA | Journal of Alzheimer's disease : JAD | 32417775 | J Alzheimers Dis | 2020 |
| Subjective Cognitive Decline and its Relation to Verbal Memory and Sex in Cognitively Unimpaired Individuals from a Colombian Cohort with Autosomal-Dominant Alzheimer's Disease. | Martinez JE, Pardilla-Delgado E, Guzmán-Vélez E, Vila-Castelar C, Amariglio R, Gatchel J, Aguirre-Acevedo DC, Bocanegra Y, Baena A, Henao E, Tirado V, Muñoz C, Giraldo-Chica M, Lopera F, Quiroz YT | Journal of the International Neuropsychological Society : JINS | 34187609 | J Int Neuropsychol Soc | 2022 Jul |
| Resilience to autosomal dominant Alzheimer's disease in a Reelin-COLBOS heterozygous man. | Lopera F, Marino C, Chandrahas AS, O'Hare M, Villalba-Moreno ND, Aguillon D, Baena A, Sanchez JS, Vila-Castelar C, Ramirez Gomez L, Chmielewska N, Oliveira GM, Littau JL, Hartmann K, Park K, Krasemann S, Glatzel M, Schoemaker D, Gonzalez-Buendia L, Delgado-Tirado S, Arevalo-Alquichire S, Saez-Torres KL, Amarnani D, Kim LA, Mazzarino RC, Gordon H, Bocanegra Y, Villegas A, Gai X, Bootwalla M, Ji J, Shen L, Kosik KS, Su Y, Chen Y, Schultz A, Sperling RA, Johnson K, Reiman EM, Sepulveda-Falla D, Arboleda-Velasquez JF, Quiroz YT | Nature medicine | 37188781 | Nat Med | 2023 May |
| APOE3 Christchurch modulates β-catenin/Wnt signaling in iPS cell-derived cerebral organoids from Alzheimer's cases. | Perez-Corredor P, Vanderleest TE, Vacano GN, Sanchez JS, Villalba-Moreno ND, Marino C, Krasemann S, Mendivil-Perez MA, Aguillón D, Jiménez-Del-Río M, Baena A, Sepulveda-Falla D, Lopera F, Quiroz YT, Arboleda-Velasquez JF, Mazzarino RC | Frontiers in molecular neuroscience | 38571814 | Front Mol Neurosci | 2024 |
| MAUI (MBI Analysis User Interface)-An image processing pipeline for Multiplexed Mass Based Imaging. | Baranski A, Milo I, Greenbaum S, Oliveria JP, Mrdjen D, Angelo M, Keren L | PLoS computational biology | 33872301 | PLoS Comput Biol | 2021 Apr |
| MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure. | Keren L, Bosse M, Thompson S, Risom T, Vijayaragavan K, McCaffrey E, Marquez D, Angoshtari R, Greenwald NF, Fienberg H, Wang J, Kambham N, Kirkwood D, Nolan G, Montine TJ, Galli SJ, West R, Bendall SC, Angelo M | Science advances | 31633026 | Sci Adv | 2019 Oct |
| Multiplexed Ion Beam Imaging Readout of Single-Cell Immunoblotting. | Lomeli G, Bosse M, Bendall SC, Angelo M, Herr AE | Analytical chemistry | 34106685 | Anal Chem | 2021 Jun 22 |
| Multiplexed imaging reveals an IFN-γ-driven inflammatory state in nivolumab-associated gastritis. | Ferrian S, Liu CC, McCaffrey EF, Kumar R, Nowicki TS, Dawson DW, Baranski A, Glaspy JA, Ribas A, Bendall SC, Angelo M | Cell reports. Medicine | 34755133 | Cell Rep Med | 2021 Oct 19 |
| Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF). | Liu CC, Bosse M, Kong A, Kagel A, Kinders R, Hewitt SM, Varma S, van de Rijn M, Nowak SH, Bendall SC, Angelo M | Laboratory investigation; a journal of technical methods and pathology | 35351966 | Lab Invest | 2022 Jul |
| Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma. | Risom T, Glass DR, Averbukh I, Liu CC, Baranski A, Kagel A, McCaffrey EF, Greenwald NF, Rivero-Gutiérrez B, Strand SH, Varma S, Kong A, Keren L, Srivastava S, Zhu C, Khair Z, Veis DJ, Deschryver K, Vennam S, Maley C, Hwang ES, Marks JR, Bendall SC, Colditz GA, West RB, Angelo M | Cell | 35063072 | Cell | 2022 Jan 20 |
| A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging. | Keren L, Bosse M, Marquez D, Angoshtari R, Jain S, Varma S, Yang SR, Kurian A, Van Valen D, West R, Bendall SC, Angelo M | Cell | 30193111 | Cell | 2018 Sep 6 |
| Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning. | Greenwald NF, Miller G, Moen E, Kong A, Kagel A, Dougherty T, Fullaway CC, McIntosh BJ, Leow KX, Schwartz MS, Pavelchek C, Cui S, Camplisson I, Bar-Tal O, Singh J, Fong M, Chaudhry G, Abraham Z, Moseley J, Warshawsky S, Soon E, Greenbaum S, Risom T, Hollmann T, Bendall SC, Keren L, Graf W, Angelo M, Van Valen D | Nature biotechnology | 34795433 | Nat Biotechnol | 2022 Apr |
| Nonparametric variable importance assessment using machine learning techniques. | Williamson BD, Gilbert PB, Carone M, Simon N | Biometrics | 33043428 | Biometrics | 2021 Mar |
| Rejoinder to "Nonparametric variable importance assessment using machine learning techniques". | Williamson BD, Gilbert PB, Carone M, Simon N | Biometrics | 33290576 | Biometrics | 2021 Mar |
| Fused Lasso Additive Model. | Petersen A, Witten D, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 28239246 | J Comput Graph Stat | 2016 |
| Rank Conditional Coverage and Confidence Intervals in High-Dimensional Problems. | Morrison J, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 30740009 | J Comput Graph Stat | 2018 |
| Inference for multimarker adaptive enrichment trials. | Simon R, Simon N | Statistics in medicine | 28795420 | Stat Med | 2017 Nov 20 |
| A framework for estimating and testing qualitative interactions with applications to predictive biomarkers. | Roth J, Simon N | Biostatistics (Oxford, England) | 28968765 | Biostatistics | 2018 Jul 1 |
| Epigenetic memory via concordant DNA methylation is inversely correlated to developmental potential of mammalian cells. | Choi M, Genereux DP, Goodson J, Al-Azzawi H, Allain SQ, Simon N, Palasek S, Ware CB, Cavanaugh C, Miller DG, Johnson WC, Sinclair KD, Stöger R, Laird CD | PLoS genetics | 29107996 | PLoS Genet | 2017 Nov |
| Using Bayesian modeling in frequentist adaptive enrichment designs. | Simon N, Simon R | Biostatistics (Oxford, England) | 28520893 | Biostatistics | 2018 Jan 1 |
| Simultaneous detection and estimation of trait associations with genomic phenotypes. | Morrison J, Simon N, Witten D | Biostatistics (Oxford, England) | 27496912 | Biostatistics | 2017 Jan |
| ESTIMATION OF CELL LINEAGE TREES BY MAXIMUM-LIKELIHOOD PHYLOGENETICS. | Feng J, Dewitt WS 3rd, McKenna A, Simon N, Willis AD, Matsen FA 4th | The annals of applied statistics | 35990087 | Ann Appl Stat | 2021 Mar |
| Survival analysis of DNA mutation motifs with penalized proportional hazards. | Feng J, Shaw DA, Minin VN, Simon N, Matsen FA 4th | The annals of applied statistics | 33214798 | Ann Appl Stat | 2019 Jun |
| An online framework for survival analysis: reframing Cox proportional hazards model for large data sets and neural networks. | Tarkhan A, Simon N | Biostatistics (Oxford, England) | 36288541 | Biostatistics | 2023 Dec 15 |
| Convex Modeling of Interactions with Strong Heredity. | Haris A, Witten D, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 28316461 | J Comput Graph Stat | 2016 |
| Learning to learn from data: Using deep adversarial learning to construct optimal statistical procedures. | Luedtke A, Carone M, Simon N, Sofrygin O | Science advances | 32166115 | Sci Adv | 2020 Feb |
| A Flexible Framework for Nonparametric Graphical Modeling that Accommodates Machine Learning. | Xiang Y, Simon N | Proceedings of machine learning research | 33415321 | Proc Mach Learn Res | 2020 Jul |
| Approval policies for modifications to machine learning-based software as a medical device: A study of bio-creep. | Feng J, Emerson S, Simon N | Biometrics | 32981103 | Biometrics | 2021 Mar |
| Convex Regression with Interpretable Sharp Partitions. | Petersen A, Simon N, Witten D | Journal of machine learning research : JMLR | 27635120 | J Mach Learn Res | 2016 Jun |
| Selective prediction-set models with coverage rate guarantees. | Feng J, Sondhi A, Perry J, Simon N | Biometrics | 34854476 | Biometrics | 2023 Jun |
| Versatile targeting system for lentiviral vectors involving biotinylated targeting molecules. | Situ K, Chua BA, Bae SY, Meyer AS, Morizono K | Virology | 30290312 | Virology | 2018 Dec |
| JNK Pathway Activation Modulates Acquired Resistance to EGFR/HER2-Targeted Therapies. | Manole S, Richards EJ, Meyer AS | Cancer research | 27450453 | Cancer Res | 2016 Sep 15 |
| Selectivity in subunit composition of Ena/VASP tetramers. | Riquelme DN, Meyer AS, Barzik M, Keating A, Gertler FB | Bioscience reports | 26221026 | Biosci Rep | 2015 Jul 28 |
| The AXL Receptor is a Sensor of Ligand Spatial Heterogeneity. | Meyer AS, Zweemer AJ, Lauffenburger DA | Cell systems | 26236777 | Cell Syst | 2015 Jul 29 |
| Dissecting FcγR Regulation through a Multivalent Binding Model. | Robinett RA, Guan N, Lux A, Biburger M, Nimmerjahn F, Meyer AS | Cell systems | 29960887 | Cell Syst | 2018 Jul 25 |
| Systems Approaches to Cancer Biology. | Archer TC, Fertig EJ, Gosline SJ, Hafner M, Hughes SK, Joughin BA, Meyer AS, Piccolo SR, Shajahan-Haq AN | Cancer research | 27864348 | Cancer Res | 2016 Dec 1 |
| Systems biology approaches to measure and model phenotypic heterogeneity in cancer. | Meyer AS, Heiser LM | Current opinion in systems biology | 32864511 | Curr Opin Syst Biol | 2019 Oct |
| A biomaterial screening approach reveals microenvironmental mechanisms of drug resistance. | Schwartz AD, Barney LE, Jansen LE, Nguyen TV, Hall CL, Meyer AS, Peyton SR | Integrative biology : quantitative biosciences from nano to macro | 29159332 | Integr Biol (Camb) | 2017 Dec 11 |
| Modeling cell-specific dynamics and regulation of the common gamma chain cytokines. | Farhat AM, Weiner AC, Posner C, Kim ZS, Orcutt-Jahns B, Carlson SM, Meyer AS | Cell reports | 33910015 | Cell Rep | 2021 Apr 27 |
| Apoptotic Bodies Elicit Gas6-Mediated Migration of AXL-Expressing Tumor Cells. | Zweemer AJM, French CB, Mesfin J, Gordonov S, Meyer AS, Lauffenburger DA | Molecular cancer research : MCR | 28923840 | Mol Cancer Res | 2017 Dec |
| An engineered human Fc domain that behaves like a pH-toggle switch for ultra-long circulation persistence. | Lee CH, Kang TH, Godon O, Watanabe M, Delidakis G, Gillis CM, Sterlin D, Hardy D, Cogné M, Macdonald LE, Murphy AJ, Tu N, Lee J, McDaniel JR, Makowski E, Tessier PM, Meyer AS, Bruhns P, Georgiou G | Nature communications | 31695028 | Nat Commun | 2019 Nov 6 |
| Semantic Specificity in One-Year-Olds' Word Comprehension. | Bergelson E, Aslin R | Language learning and development : the official journal of the Society for Language Development | 29200981 | Lang Learn Dev | 2017 |
| Look who's talking: A comparison of automated and human-generated speaker tags in naturalistic day-long recordings. | Bulgarelli F, Bergelson E | Behavior research methods | 31342467 | Behav Res Methods | 2020 Apr |
| Linking acoustic variability in the infants' input to their early word production. | Bulgarelli F, Bergelson E | Developmental science | 38978148 | Dev Sci | 2024 Nov |
| How adults understand what young children say. | Meylan SC, Foushee R, Wong NH, Bergelson E, Levy RP | Nature human behaviour | 37884678 | Nat Hum Behav | 2023 Dec |
| Nature and origins of the lexicon in 6-mo-olds. | Bergelson E, Aslin RN | Proceedings of the National Academy of Sciences of the United States of America | 29158399 | Proc Natl Acad Sci U S A | 2017 Dec 5 |
| Mothers' Work Status and 17-month-olds' Productive Vocabulary. | Laing CE, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 30962769 | Infancy | 2019 Jan-Feb |
| Quantifying Talker Variability in North-American Infants' Daily Input. | Bulgarelli F, Mielke J, Bergelson E | Cognitive science | 34971003 | Cogn Sci | 2021 Jan |
| A thorough evaluation of the Language Environment Analysis (LENA) system. | Cristia A, Lavechin M, Scaff C, Soderstrom M, Rowland C, Räsänen O, Bunce J, Bergelson E | Behavior research methods | 32728916 | Behav Res Methods | 2021 Apr |
| Young Infants' Word Comprehension Given An Unfamiliar Talker or Altered Pronunciations. | Bergelson E, Swingley D | Child development | 28639708 | Child Dev | 2018 Sep |
| Day by day, hour by hour: Naturalistic language input to infants. | Bergelson E, Amatuni A, Dailey S, Koorathota S, Tor S | Developmental science | 30094888 | Dev Sci | 2019 Jan |
| Familiarity plays a small role in noun comprehension at 12-18 months. | Garrison H, Baudet G, Breitfeld E, Aberman A, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 32744800 | Infancy | 2020 Jul |
| Point, walk, talk: Links between three early milestones, from observation and parental report. | Moore C, Dailey S, Garrison H, Amatuni A, Bergelson E | Developmental psychology | 31094558 | Dev Psychol | 2019 Aug |
| Talker variability shapes early word representations in English-learning 8-month-olds. | Bulgarelli F, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 34997679 | Infancy | 2022 Mar |
| Talker variability is not always the right noise: 14 month olds struggle to learn dissimilar word-object pairs under talker variability conditions. | Bulgarelli F, Bergelson E | Journal of experimental child psychology | 36395621 | J Exp Child Psychol | 2023 Mar |
| Talking to talkers: Infants' talk status, but not their gender, is related to language input. | Dailey S, Bergelson E | Child development | 36458329 | Child Dev | 2023 Mar |
| Analyzing the effect of sibling number on input and output in the first 18 months. | Laing C, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 38183663 | Infancy | 2024 Mar-Apr |
| Everyday language input and production in 1,001 children from six continents. | Bergelson E, Soderstrom M, Schwarz IC, Rowland CF, Ramírez-Esparza N, R Hamrick L, Marklund E, Kalashnikova M, Guez A, Casillas M, Benetti L, Alphen PV, Cristia A | Proceedings of the National Academy of Sciences of the United States of America | 38085754 | Proc Natl Acad Sci U S A | 2023 Dec 26 |
| A Collaborative Approach to Infant Research: Promoting Reproducibility, Best Practices, and Theory-Building. | Frank MC, Bergelson E, Bergmann C, Cristia A, Floccia C, Gervain J, Hamlin JK, Hannon EE, Kline M, Levelt C, Lew-Williams C, Nazzi T, Panneton R, Rabagliati H, Soderstrom M, Sullivan J, Waxman S, Yurovsky D | Infancy : the official journal of the International Society on Infant Studies | 31772509 | Infancy | 2017 Jul-Aug |
| HomeBank: An Online Repository of Daylong Child-Centered Audio Recordings. | VanDam M, Warlaumont AS, Bergelson E, Cristia A, Soderstrom M, De Palma P, MacWhinney B | Seminars in speech and language | 27111272 | Semin Speech Lang | 2016 May |
| What Do North American Babies Hear? A large-scale cross-corpus analysis. | Bergelson E, Casillas M, Soderstrom M, Seidl A, Warlaumont AS, Amatuni A | Developmental science | 30369005 | Dev Sci | 2019 Jan |
| The Comprehension Boost in Early Word Learning: Older Infants Are Better Learners. | Bergelson E | Child development perspectives | 33569084 | Child Dev Perspect | 2020 Sep |
| Vocal development in a large-scale crosslinguistic corpus. | Cychosz M, Cristia A, Bergelson E, Casillas M, Baudet G, Warlaumont AS, Scaff C, Yankowitz L, Seidl A | Developmental science | 33497512 | Dev Sci | 2021 Sep |
| Accuracy of the Language Environment Analysis System Segmentation and Metrics: A Systematic Review. | Cristia A, Bulgarelli F, Bergelson E | Journal of speech, language, and hearing research : JSLHR | 32302262 | J Speech Lang Hear Res | 2020 Apr 27 |
| From babble to words: Infants' early productions match words and objects in their environment. | Laing C, Bergelson E | Cognitive psychology | 32504852 | Cogn Psychol | 2020 Nov |
| Artificial intelligence-powered 3D analysis of video-based caregiver-child interactions. | Weng Z, Bravo-Sánchez L, Wang Z, Howard C, Xenochristou M, Meister N, Kanazawa A, Milstein A, Bergelson E, Humphreys KL, Sanders LM, Yeung-Levy S | Science advances | 39951536 | Sci Adv | 2025 Feb 14 |
| Prevalence and correlates of hazardous alcohol consumption and binge drinking among men who have sex with men (MSM) in San Francisco. | Santos GM, Rowe C, Hern J, Walker JE, Ali A, Ornelaz M, Prescott M, Coffin P, McFarland W, Raymond HF | PloS one | 30118495 | PLoS One | 2018 |
| Acceptability of pharmacotherapy for hazardous alcohol use among men who have sex with men: Findings from a qualitative study. | Hsiang E, Jennings D, Matheson T, Hern J, Euren J, Santos GM | Addictive behaviors reports | 30258972 | Addict Behav Rep | 2018 Dec |
| Correlates of Alcohol-Using Network Size Among Men Who Have Sex with Men in San Francisco, CA. | Garcia A, Rowe C, Turner C, Santos GM | American journal of men's health | 33899602 | Am J Mens Health | 2021 Mar-Apr |
| Racial/Ethnic Disparities in Club Drug Use, Situational Club Drug Use during Sex, and Sexual Risk Behaviors among Alcohol-Using Men Who Have Sex with Men (MSM) in San Francisco. | Santos GM, Hernandez C, Lam E, Hern J, Rowe C | Substance use & misuse | 38307836 | Subst Use Misuse | 2024 |
| Interest in the Use of Herbal Supplements to Close the Treatment Gap for Hazardous Alcohol Use Among Men Who Have Sex With Men: Secondary Analysis of a Cross-Sectional Study. | Hernandez C, Rowe C, Ikeda J, Arenander J, Santos GM | JMIR formative research | 39471379 | JMIR Form Res | 2024 Oct 29 |
| Pervasive Heavy Alcohol Use and Correlates of Increasing Levels of Binge Drinking among Men Who Have Sex with Men, San Francisco, 2011. | Santos GM, Jin H, Raymond HF | Journal of urban health : bulletin of the New York Academy of Medicine | 25895622 | J Urban Health | 2015 Aug |
| Correlates of high phosphatidylethanol (PEth) levels and their concordance with self-reported heavy alcohol consumption among men who have sex with men who binge drink alcohol. | McLaughlin MF, Jain JP, Ikeda J, Walker JE, Coffin P, Santos GM | Alcoholism, clinical and experimental research | 35722862 | Alcohol Clin Exp Res | 2022 Aug |
| Does HIV Pre-Exposure Prophylaxis Modify the Effect of Partnership Characteristics on Condom Use? A Cross-Sectional Study of Sexual Partnerships Among Men Who Have Sex with Men in San Francisco, California. | Prescott MR, Hern J, Petersen M, Santos GM | AIDS patient care and STDs | 30932698 | AIDS Patient Care STDS | 2019 Apr |
| Social and Behavioral Correlates of Sexually Transmitted Infections among Men who Have Sex with Men who Use Alcohol in the San Francisco Bay Area. | Jain JP, Gyamerah AO, Baguso GN, Dawson-Rose C, Ikeda J, Santos GM | American journal of men's health | 34134567 | Am J Mens Health | 2021 May-Jun |
| Binge drinking concurrent with anal intercourse and condom use among men who have sex with men. | Rowe C, Liou T, Vittinghoff E, Coffin PO, Santos GM | AIDS care | 27241085 | AIDS Care | 2016 Dec |
| Targeted Oral Naltrexone for Mild to Moderate Alcohol Use Disorder Among Sexual and Gender Minority Men: A Randomized Trial. | Santos GM, Ikeda J, Coffin P, Walker J, Matheson T, Ali A, McLaughlin M, Jain J, Arenander J, Vittinghoff E, Batki S | The American journal of psychiatry | 36285404 | Am J Psychiatry | 2022 Dec 1 |
| Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response. | Guerra-Moreno A, Isasa M, Bhanu MK, Waterman DP, Eapen VV, Gygi SP, Hanna J | The Journal of biological chemistry | 26491016 | J Biol Chem | 2015 Dec 11 |
| Reg1 and Snf1 regulate stress-induced relocalization of protein phosphatase-1 to cytoplasmic granules. | Schnell HM, Jochem M, Micoogullari Y, Riggs CL, Ivanov P, Welsch H, Ravindran R, Anderson P, Robinson LC, Tatchell K, Hanna J | The FEBS journal | 33682330 | FEBS J | 2021 Aug |
| Structures of chaperone-associated assembly intermediates reveal coordinated mechanisms of proteasome biogenesis. | Schnell HM, Walsh RM Jr, Rawson S, Kaur M, Bhanu MK, Tian G, Prado MA, Guerra-Moreno A, Paulo JA, Gygi SP, Roelofs J, Finley D, Hanna J | Nature structural & molecular biology | 33846632 | Nat Struct Mol Biol | 2021 May |
| Tmc1 Is a Dynamically Regulated Effector of the Rpn4 Proteotoxic Stress Response. | Guerra-Moreno A, Hanna J | The Journal of biological chemistry | 27226598 | J Biol Chem | 2016 Jul 8 |
| Solution Structure of the Cuz1 AN1 Zinc Finger Domain: An Exposed LDFLP Motif Defines a Subfamily of AN1 Proteins. | Sun ZJ, Bhanu MK, Allan MG, Arthanari H, Wagner G, Hanna J | PloS one | 27662200 | PLoS One | 2016 |
| Phospholipase Lpl1 links lipid droplet function with quality control protein degradation. | Weisshaar N, Welsch H, Guerra-Moreno A, Hanna J | Molecular biology of the cell | 28100635 | Mol Biol Cell | 2017 Mar 15 |
| Induction of proteotoxic stress by the mycotoxin patulin. | Guerra-Moreno A, Hanna J | Toxicology letters | 28529145 | Toxicol Lett | 2017 Jul 5 |
| Thiol-based direct threat sensing by the stress-activated protein kinase Hog1. | Guerra-Moreno A, Prado MA, Ang J, Schnell HM, Micoogullari Y, Paulo JA, Finley D, Gygi SP, Hanna J | Science signaling | 31772124 | Sci Signal | 2019 Nov 26 |
| Regulation of the unfolded protein response in yeast by oxidative stress. | Guerra-Moreno A, Ang J, Welsch H, Jochem M, Hanna J | FEBS letters | 31002390 | FEBS Lett | 2019 May |
| Protein Degradation and the Pathologic Basis of Disease. | Hanna J, Guerra-Moreno A, Ang J, Micoogullari Y | The American journal of pathology | 30312581 | Am J Pathol | 2019 Jan |
| Targeted Degradation of Glucose Transporters Protects against Arsenic Toxicity. | Jochem M, Ende L, Isasa M, Ang J, Schnell H, Guerra-Moreno A, Micoogullari Y, Bhanu M, Gygi SP, Hanna J | Molecular and cellular biology | 30886123 | Mol Cell Biol | 2019 May 15 |
| Yeast PI31 inhibits the proteasome by a direct multisite mechanism. | Rawson S, Walsh RM Jr, Velez B, Schnell HM, Jiao F, Blickling M, Ang J, Bhanu MK, Huang L, Hanna J | Nature structural & molecular biology | 35927584 | Nat Struct Mol Biol | 2022 Aug |
| Dysregulation of very-long-chain fatty acid metabolism causes membrane saturation and induction of the unfolded protein response. | Micoogullari Y, Basu SS, Ang J, Weisshaar N, Schmitt ND, Abdelmoula WM, Lopez B, Agar JN, Agar N, Hanna J | Molecular biology of the cell | 31746669 | Mol Biol Cell | 2020 Jan 1 |
| Mechanism of proteasome gate modulation by assembly chaperones Pba1 and Pba2. | Schnell HM, Ang J, Rawson S, Walsh RM Jr, Micoogullari Y, Hanna J | The Journal of biological chemistry | 35398095 | J Biol Chem | 2022 May |
| Potentiating aminoglycoside antibiotics to reduce their toxic side effects. | Rosenberg CR, Fang X, Allison KR | PloS one | 32877437 | PLoS One | 2020 |
| Resuscitation dynamics reveal persister partitioning after antibiotic treatment. | Fang X, Allison KR | Molecular systems biology | 36866643 | Mol Syst Biol | 2023 Apr 12 |
| Escherichia coli self-organizes developmental rosettes. | Puri D, Allison KR | Proceedings of the National Academy of Sciences of the United States of America | 38814871 | Proc Natl Acad Sci U S A | 2024 Jun 4 |
| High accuracy label-free classification of single-cell kinetic states from holographic cytometry of human melanoma cells. | Hejna M, Jorapur A, Song JS, Judson RL | Scientific reports | 28931937 | Sci Rep | 2017 Sep 20 |
| MicroRNA Ratios Distinguish Melanomas from Nevi. | Torres R, Lang UE, Hejna M, Shelton SJ, Joseph NM, Shain AH, Yeh I, Wei ML, Oldham MC, Bastian BC, Judson-Torres RL | The Journal of investigative dermatology | 31580842 | J Invest Dermatol | 2020 Jan |
| The genomic landscapes of individual melanocytes from human skin. | Tang J, Fewings E, Chang D, Zeng H, Liu S, Jorapur A, Belote RL, McNeal AS, Tan TM, Yeh I, Arron ST, Judson-Torres RL, Bastian BC, Shain AH | Nature | 33029006 | Nature | 2020 Oct |
| Evaluation of holographic imaging cytometer holomonitor M4® motility applications. | Zhang Y, Judson RL | Cytometry. Part A : the journal of the International Society for Analytical Cytology | 30343513 | Cytometry A | 2018 Nov |
| Bi-allelic Loss of CDKN2A Initiates Melanoma Invasion via BRN2 Activation. | Zeng H, Jorapur A, Shain AH, Lang UE, Torres R, Zhang Y, McNeal AS, Botton T, Lin J, Donne M, Bastian IN, Yu R, North JP, Pincus L, Ruben BS, Joseph NM, Yeh I, Bastian BC, Judson RL | Cancer cell | 29990501 | Cancer Cell | 2018 Jul 9 |
| BRAF(V600E) induces reversible mitotic arrest in human melanocytes via microrna-mediated suppression of AURKB. | McNeal AS, Belote RL, Zeng H, Urquijo M, Barker K, Torres R, Curtin M, Shain AH, Andtbacka RH, Holmen S, Lum DH, McCalmont TH, VanBrocklin MW, Grossman D, Wei ML, Lang UE, Judson-Torres RL | eLife | 34812139 | Elife | 2021 Nov 23 |
| Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation. | Zheng X, Krakowiak J, Patel N, Beyzavi A, Ezike J, Khalil AS, Pincus D | eLife | 27831465 | Elife | 2016 Nov 10 |
| Hsf1 and Hsp70 constitute a two-component feedback loop that regulates the yeast heat shock response. | Krakowiak J, Zheng X, Patel N, Feder ZA, Anandhakumar J, Valerius K, Gross DS, Khalil AS, Pincus D | eLife | 29393852 | Elife | 2018 Feb 2 |
| Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome. | Pincus D, Anandhakumar J, Thiru P, Guertin MJ, Erkine AM, Gross DS | Molecular biology of the cell | 30332327 | Mol Biol Cell | 2018 Dec 15 |
| Delayed Ras/PKA signaling augments the unfolded protein response. | Pincus D, Aranda-Díaz A, Zuleta IA, Walter P, El-Samad H | Proceedings of the National Academy of Sciences of the United States of America | 25275008 | Proc Natl Acad Sci U S A | 2014 Oct 14 |
| tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae. | Damon JR, Pincus D, Ploegh HL | Molecular biology of the cell | 25392298 | Mol Biol Cell | 2015 Jan 15 |
| Unrestrained AMPylation targets cytosolic chaperones and activates the heat shock response. | Truttmann MC, Zheng X, Hanke L, Damon JR, Grootveld M, Krakowiak J, Pincus D, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 28031489 | Proc Natl Acad Sci U S A | 2017 Jan 10 |
| Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity. | Kayatekin C, Amasino A, Gaglia G, Flannick J, Bonner JM, Fanning S, Narayan P, Barrasa MI, Pincus D, Landgraf D, Nelson J, Hesse WR, Costanzo M, AMP T2D-GENES Consortium, Myers CL, Boone C, Florez JC, Lindquist S | Cell | 29526462 | Cell | 2018 Mar 22 |
| Lipidomic Analysis of α-Synuclein Neurotoxicity Identifies Stearoyl CoA Desaturase as a Target for Parkinson Treatment. | Fanning S, Haque A, Imberdis T, Baru V, Barrasa MI, Nuber S, Termine D, Ramalingam N, Ho GPH, Noble T, Sandoe J, Lou Y, Landgraf D, Freyzon Y, Newby G, Soldner F, Terry-Kantor E, Kim TE, Hofbauer HF, Becuwe M, Jaenisch R, Pincus D, Clish CB, Walther TC, Farese RV Jr, Srinivasan S, Welte MA, Kohlwein SD, Dettmer U, Lindquist S, Selkoe D | Molecular cell | 30527540 | Mol Cell | 2019 Mar 7 |
| Size doesn't matter in the heat shock response. | Pincus D | Current genetics | 27502399 | Curr Genet | 2017 May |
| Heat Shock Factor 1 Drives Intergenic Association of Its Target Gene Loci upon Heat Shock. | Chowdhary S, Kainth AS, Pincus D, Gross DS | Cell reports | 30605674 | Cell Rep | 2019 Jan 2 |
| Hsf1 Phosphorylation Generates Cell-to-Cell Variation in Hsp90 Levels and Promotes Phenotypic Plasticity. | Zheng X, Beyzavi A, Krakowiak J, Patel N, Khalil AS, Pincus D | Cell reports | 29562166 | Cell Rep | 2018 Mar 20 |
| Serial Immunoprecipitation of 3xFLAG/V5-tagged Yeast Proteins to Identify Specific Interactions with Chaperone Proteins. | Zheng X, Pincus D | Bio-protocol | 29104895 | Bio Protoc | 2017 Jun 20 |
| Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis. | Solís EJ, Pandey JP, Zheng X, Jin DX, Gupta PB, Airoldi EM, Pincus D, Denic V | Molecular cell | 29395071 | Mol Cell | 2018 Feb 1 |
| Persistent Activation of mRNA Translation by Transient Hsp90 Inhibition. | Tsvetkov P, Eisen TJ, Heinrich SU, Brune Z, Hallacli E, Newby GA, Kayatekin C, Pincus D, Lindquist S | Cell reports | 32783929 | Cell Rep | 2020 Aug 11 |
| Specificity in endoplasmic reticulum-stress signaling in yeast entails a step-wise engagement of HAC1 mRNA to clusters of the stress sensor Ire1. | van Anken E, Pincus D, Coyle S, Aragón T, Osman C, Lari F, Gómez Puerta S, Korennykh AV, Walter P | eLife | 25549299 | Elife | 2014 Dec 30 |
| Chaperone AMPylation modulates aggregation and toxicity of neurodegenerative disease-associated polypeptides. | Truttmann MC, Pincus D, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 29760078 | Proc Natl Acad Sci U S A | 2018 May 29 |
| m(6)A modification of a 3' UTR site reduces RME1 mRNA levels to promote meiosis. | Bushkin GG, Pincus D, Morgan JT, Richardson K, Lewis C, Chan SH, Bartel DP, Fink GR | Nature communications | 31363087 | Nat Commun | 2019 Jul 30 |
| Multi-kinase control of environmental stress responsive transcription. | Mace K, Krakowiak J, El-Samad H, Pincus D | PloS one | 32160258 | PLoS One | 2020 |
| Blue light receptor CRY1 regulates HSFA1d nuclear localization to promote plant thermotolerance. | Gao J, Zhang R, Zheng L, Song L, Ji M, Li S, Wang J, Yang J, Kang G, Zhang P, Shi Y, Jiao Y, Pincus D, Zheng X | Cell reports | 37703177 | Cell Rep | 2023 Sep 26 |
| Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis. | Solís EJ, Pandey JP, Zheng X, Jin DX, Gupta PB, Airoldi EM, Pincus D, Denic V | Molecular cell | 27320198 | Mol Cell | 2016 Jul 7 |
| An evolution-based strategy for engineering allosteric regulation. | Pincus D, Resnekov O, Reynolds KA | Physical biology | 28266924 | Phys Biol | 2017 Apr 28 |
| Hierarchical Organization Endows the Kinase Domain with Regulatory Plasticity. | Creixell P, Pandey JP, Palmeri A, Bhattacharyya M, Creixell M, Ranganathan R, Pincus D, Yaffe MB | Cell systems | 30243563 | Cell Syst | 2018 Oct 24 |
| Engineering allosteric regulation in protein kinases. | Pincus D, Pandey JP, Feder ZA, Creixell P, Resnekov O, Reynolds KA | Science signaling | 30401787 | Sci Signal | 2018 Nov 6 |
| Subcellular localization of the J-protein Sis1 regulates the heat shock response. | Feder ZA, Ali A, Singh A, Krakowiak J, Zheng X, Bindokas VP, Wolfgeher D, Kron SJ, Pincus D | The Journal of cell biology | 33326013 | J Cell Biol | 2021 Jan 4 |
| Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. | Carter H, Marty R, Hofree M, Gross AM, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo GW, Gutkind JS, Ideker T | Cancer discovery | 28188128 | Cancer Discov | 2017 Apr |
| MHC-I Genotype Restricts the Oncogenic Mutational Landscape. | Marty R, Kaabinejadian S, Rossell D, Slifker MJ, van de Haar J, Engin HB, de Prisco N, Ideker T, Hildebrand WH, Font-Burgada J, Carter H | Cell | 29107334 | Cell | 2017 Nov 30 |
| Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes. | Castro A, Ozturk K, Pyke RM, Xian S, Zanetti M, Carter H | BMC medical genomics | 31345234 | BMC Med Genomics | 2019 Jul 25 |
| Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss. | Gross AM, Orosco RK, Shen JP, Egloff AM, Carter H, Hofree M, Choueiri M, Coffey CS, Lippman SM, Hayes DN, Cohen EE, Grandis JR, Nguyen QT, Ideker T | Nature genetics | 25086664 | Nat Genet | 2014 Sep |
| Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response. | Zhang P, Kitchen-Smith I, Xiong L, Stracquadanio G, Brown K, Richter PH, Wallace MD, Bond E, Sahgal N, Moore S, Nornes S, De Val S, Surakhy M, Sims D, Wang X, Bell DA, Zeron-Medina J, Jiang Y, Ryan AJ, Selfe JL, Shipley J, Kar S, Pharoah PD, Loveday C, Jansen R, Grochola LF, Palles C, Protheroe A, Millar V, Ebner DV, Pagadala M, Blagden SP, Maughan TS, Domingo E, Tomlinson I, Turnbull C, Carter H, Bond GL | Cancer research | 33558336 | Cancer Res | 2021 Apr 1 |
| Structure-Based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces. | Engin HB, Kreisberg JF, Carter H | PloS one | 27043210 | PLoS One | 2016 |
| 3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry. | Velez DO, Tsui B, Goshia T, Chute CL, Han A, Carter H, Fraley SI | Nature communications | 29162797 | Nat Commun | 2017 Nov 21 |
| Immune DNA signature of T-cell infiltration in breast tumor exomes. | Levy E, Marty R, Gárate Calderón V, Woo B, Dow M, Armisen R, Carter H, Harismendy O | Scientific reports | 27452728 | Sci Rep | 2016 Jul 25 |
| Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls. | Buckley AR, Standish KA, Bhutani K, Ideker T, Lasken RS, Carter H, Harismendy O, Schork NJ | BMC genomics | 28606096 | BMC Genomics | 2017 Jun 12 |
| Integrating molecular networks with genetic variant interpretation for precision medicine. | Capriotti E, Ozturk K, Carter H | Wiley interdisciplinary reviews. Systems biology and medicine | 30548534 | Wiley Interdiscip Rev Syst Biol Med | 2019 May |
| A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. | Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T | Nature genetics | 29610481 | Nat Genet | 2018 Apr |
| IRE1α regulates macrophage polarization, PD-L1 expression, and tumor survival. | Batista A, Rodvold JJ, Xian S, Searles SC, Lew A, Iwawaki T, Almanza G, Waller TC, Lin J, Jepsen K, Carter H, Zanetti M | PLoS biology | 32520957 | PLoS Biol | 2020 Jun |
| Integrative genomic analysis of mouse and human hepatocellular carcinoma. | Dow M, Pyke RM, Tsui BY, Alexandrov LB, Nakagawa H, Taniguchi K, Seki E, Harismendy O, Shalapour S, Karin M, Carter H, Font-Burgada J | Proceedings of the National Academy of Sciences of the United States of America | 30287485 | Proc Natl Acad Sci U S A | 2018 Oct 16 |
| Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival. | Pyke RM, Genolet R, Harari A, Coukos G, Gfeller D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864318 | Pac Symp Biocomput | 2019 |
| Common genetic variation in the germline influences where and how tumors develop. | Carter H, Ideker T | Molecular & cellular oncology | 28616579 | Mol Cell Oncol | 2017 |
| Challenges in identifying cancer genes by analysis of exome sequencing data. | Hofree M, Carter H, Kreisberg JF, Bandyopadhyay S, Mischel PS, Friend S, Ideker T | Nature communications | 27417679 | Nat Commun | 2016 Jul 15 |
| Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. | Klie A, Tsui BY, Mollah S, Skola D, Dow M, Hsu CN, Carter H | Database : the journal of biological databases and curation | 33914028 | Database (Oxford) | 2021 Apr 29 |
| Identifying Driver Interfaces Enriched for Somatic Missense Mutations in Tumors. | Ozturk K, Carter H | Methods in molecular biology (Clifton, N.J.) | 30542990 | Methods Mol Biol | 2019 |
| Extracting allelic read counts from 250,000 human sequencing runs in Sequence Read Archive. | Tsui B, Dow M, Skola D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864322 | Pac Symp Biocomput | 2019 |
| Identifying mutation specific cancer pathways using a structurally resolved protein interaction network. | Engin HB, Hofree M, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 25592571 | Pac Symp Biocomput | 2015 |
| Modeling of RAS complexes supports roles in cancer for less studied partners. | Engin HB, Carlin D, Pratt D, Carter H | BMC biophysics | 28815022 | BMC Biophys | 2017 |
| The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine. | Ozturk K, Dow M, Carlin DE, Bejar R, Carter H | Journal of molecular biology | 29908887 | J Mol Biol | 2018 Sep 14 |
| Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment. | Wang T, Tsui B, Kreisberg JF, Robertson NA, Gross AM, Yu MK, Carter H, Brown-Borg HM, Adams PD, Ideker T | Genome biology | 28351423 | Genome Biol | 2017 Mar 28 |
| Evolutionary Pressure against MHC Class II Binding Cancer Mutations. | Marty Pyke R, Thompson WK, Salem RM, Font-Burgada J, Zanetti M, Carter H | Cell | 30245014 | Cell | 2018 Oct 4 |
| Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. | Zhou Y, Bastian IN, Long MD, Dow M, Li W, Liu T, Ngu RK, Antonucci L, Huang JY, Phung QT, Zhao XH, Banerjee S, Lin XJ, Wang H, Dang B, Choi S, Karin D, Su H, Ellisman MH, Jamieson C, Bosenberg M, Cheng Z, Haybaeck J, Kenner L, Fisch KM, Bourgon R, Hernandez G, Lill JR, Liu S, Carter H, Mellman I, Karin M, Shalapour S | Proceedings of the National Academy of Sciences of the United States of America | 33602823 | Proc Natl Acad Sci U S A | 2021 Feb 23 |
| MHC-I genotype and tumor mutational burden predict response to immunotherapy. | Goodman AM, Castro A, Pyke RM, Okamura R, Kato S, Riviere P, Frampton G, Sokol E, Zhang X, Ball ED, Carter H, Kurzrock R | Genome medicine | 32430031 | Genome Med | 2020 May 19 |
| The RUNX1-ETO target gene RASSF2 suppresses t(8;21) AML development and regulates Rac GTPase signaling. | Stoner SA, Liu KTH, Andrews ET, Liu M, Arimoto KI, Yan M, Davis AG, Weng S, Dow M, Xian S, DeKelver RC, Carter H, Zhang DE | Blood cancer journal | 32029705 | Blood Cancer J | 2020 Feb 6 |
| MHC-I genotype drives early immune selection of oncogenic mutations. | Marty R, de Prisco N, Carter H, Font-Burgada J | Molecular & cellular oncology | 29487895 | Mol Cell Oncol | 2018 |
| Predicting functional consequences of mutations using molecular interaction network features. | Ozturk K, Carter H | Human genetics | 34432150 | Hum Genet | 2022 Jun |
| Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis. | Yano JM, Yu K, Donaldson GP, Shastri GG, Ann P, Ma L, Nagler CR, Ismagilov RF, Mazmanian SK, Hsiao EY | Cell | 25860609 | Cell | 2015 Apr 9 |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 30007420 | Cell | 2018 Jul 12 |
| Emerging Roles for the Gut Microbiome in Autism Spectrum Disorder. | Vuong HE, Hsiao EY | Biological psychiatry | 27773355 | Biol Psychiatry | 2017 Mar 1 |
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| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 29804833 | Cell | 2018 Jun 14 |
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| Finding and Keeping Friends in College and Their Influence on Alcohol Use: A Network Analysis. | Schaefer DR, Van Woerden I, Hruschka D, Bruening M | Journal of studies on alcohol and drugs | 33573730 | J Stud Alcohol Drugs | 2021 Jan |
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| The Association among Emotions and Food Choices in First-Year College Students Using mobile-Ecological Momentary Assessments. | Ashurst J, van Woerden I, Dunton G, Todd M, Ohri-Vachaspati P, Swan P, Bruening M | BMC public health | 29716572 | BMC Public Health | 2018 May 2 |
| Longitudinal social networks impacts on weight and weight-related behaviors assessed using mobile-based ecological momentary assessments: Study Protocols for the SPARC study. | Bruening M, Ohri-Vachaspati P, Brewis A, Laska M, Todd M, Hruschka D, Schaefer DR, Whisner CM, Dunton G | BMC public health | 27576358 | BMC Public Health | 2016 Aug 30 |
| Microbial Ecology and Metabolism of Emerging Adulthood: Gut Microbiome Insights from a College Freshman Cohort. | Mohr AE, Jasbi P, van Woerden I, Chi J, Gu H, Bruening M, Whisner CM | Gut microbes reports | 39221110 | Gut Microbes Rep | 2024 |
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| A Mobile Ecological Momentary Assessment Tool (devilSPARC) for Nutrition and Physical Activity Behaviors in College Students: A Validation Study. | Bruening M, van Woerden I, Todd M, Brennhofer S, Laska MN, Dunton G | Journal of medical Internet research | 27465701 | J Med Internet Res | 2016 Jul 27 |
| The Struggle Is Real: A Systematic Review of Food Insecurity on Postsecondary Education Campuses. | Bruening M, Argo K, Payne-Sturges D, Laska MN | Journal of the Academy of Nutrition and Dietetics | 28754200 | J Acad Nutr Diet | 2017 Nov |
| Gut microbiome diversity, variability, and latent community types compared with shifts in body weight during the freshman year of college in dormitory-housed adolescents. | Mohr AE, Ahern MM, Sears DD, Bruening M, Whisner CM | Gut microbes | 37642346 | Gut Microbes | 2023 Dec |
| A Systematic Review of Methods and Procedures Used in Ecological Momentary Assessments of Diet and Physical Activity Research in Youth: An Adapted STROBE Checklist for Reporting EMA Studies (CREMAS). | Liao Y, Skelton K, Dunton G, Bruening M | Journal of medical Internet research | 27328833 | J Med Internet Res | 2016 Jun 21 |
| Friendship as a social mechanism influencing body mass index (BMI) among emerging adults. | Bruening M, van Woerden I, Schaefer DR, Hruschka D, Brewis A, Whisner CM, Dunton GF, Todd M, Ohri-Vachaspati P, Laska MN | PloS one | 30562375 | PLoS One | 2018 |
| Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study. | Whisner CM, Maldonado J, Dente B, Krajmalnik-Brown R, Bruening M | BMC microbiology | 30541450 | BMC Microbiol | 2018 Dec 12 |
| Evaluating Potential Behavioral Mediators for Increasing Similarity in Friends' Body Size among College Students. | van Woerden I, Hruschka D, Schaefer DR, Fine KL, Bruening M | Nutrients | 31450804 | Nutrients | 2019 Aug 23 |
| Changes in Weight Status and the Intestinal Microbiota Among College Freshman, Aged 18 Years. | Journey EK, Ortega-Santos CP, Bruening M, Whisner CM | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 31477511 | J Adolesc Health | 2020 Feb |
| Similarity in meal plan use among first-year roommates. | van Woerden I, Schaefer DR, Hruschka D, Vega-Lopez S, Adams M, Bruening M | Appetite | 31593746 | Appetite | 2020 Jan 1 |
| Young adults' BMI and changes in romantic relationship status during the first semester of college. | van Woerden I, Brewis A, Hruschka D, Dunton G, Adams MA, Bruening M | PloS one | 32214397 | PLoS One | 2020 |
| Weight Shame, Social Connection, and Depressive Symptoms in Late Adolescence. | Brewis AA, Bruening M | International journal of environmental research and public health | 29723962 | Int J Environ Res Public Health | 2018 May 1 |
| Food Insecure College Students and Objective Measurements of Their Unused Meal Plans. | van Woerden I, Hruschka D, Vega-Lόpez S, Schaefer DR, Adams M, Bruening M | Nutrients | 31018554 | Nutrients | 2019 Apr 23 |
| Weight stigma and eating behaviors on a college campus: Are students immune to stigma's effects? | Brewis A, Brennhofer S, van Woerden I, Bruening M | Preventive medicine reports | 27833844 | Prev Med Rep | 2016 Dec |
| Hungry to learn: the prevalence and effects of food insecurity on health behaviors and outcomes over time among a diverse sample of university freshmen. | Bruening M, van Woerden I, Todd M, Laska MN | The international journal of behavioral nutrition and physical activity | 29347963 | Int J Behav Nutr Phys Act | 2018 Jan 18 |
| Improved specificity of hippocampal memory trace labeling. | Cazzulino AS, Martinez R, Tomm NK, Denny CA | Hippocampus | 26662713 | Hippocampus | 2016 Jun |
| Optogenetic stimulation of dentate gyrus engrams restores memory in Alzheimer's disease mice. | Perusini JN, Cajigas SA, Cohensedgh O, Lim SC, Pavlova IP, Donaldson ZR, Denny CA | Hippocampus | 28667669 | Hippocampus | 2017 Oct |
| Hippocampal memory traces are differentially modulated by experience, time, and adult neurogenesis. | Denny CA, Kheirbek MA, Alba EL, Tanaka KF, Brachman RA, Laughman KB, Tomm NK, Turi GF, Losonczy A, Hen R | Neuron | 24991962 | Neuron | 2014 Jul 2 |
| Divergence in the metabolome between natural aging and Alzheimer's disease. | Hunsberger HC, Greenwood BP, Tolstikov V, Narain NR, Kiebish MA, Denny CA | Scientific reports | 32699218 | Sci Rep | 2020 Jul 22 |
| Common Neurotransmission Recruited in (R,S)-Ketamine and (2R,6R)-Hydroxynorketamine-Induced Sustained Antidepressant-like Effects. | Pham TH, Defaix C, Xu X, Deng SX, Fabresse N, Alvarez JC, Landry DW, Brachman RA, Denny CA, Gardier AM | Biological psychiatry | 29174592 | Biol Psychiatry | 2018 Jul 1 |
| Sex-Specific Effects of Anxiety on Cognition and Activity-Dependent Neural Networks: Insights from (Female) Mice and (Wo)Men. | Hunsberger HC, Lee S, Jin M, Lanio M, Whye A, Cha J, Scarlata M, Jayaseelan K, Denny CA | bioRxiv : the preprint server for biology | 37503264 | bioRxiv | 2023 Jul 10 |
| The participation of cortical amygdala in innate, odour-driven behaviour. | Root CM, Denny CA, Hen R, Axel R | Nature | 25383519 | Nature | 2014 Nov 13 |
| Antidepressant but Not Prophylactic Ketamine Administration Alters Calretinin and Calbindin Expression in the Ventral Hippocampus. | LaGamma CT, Tang WW, Morgan AA, McGowan JC, Brachman RA, Denny CA | Frontiers in molecular neuroscience | 30459554 | Front Mol Neurosci | 2018 |
| Ventral CA3 Activation Mediates Prophylactic Ketamine Efficacy Against Stress-Induced Depressive-like Behavior. | Mastrodonato A, Martinez R, Pavlova IP, LaGamma CT, Brachman RA, Robison AJ, Denny CA | Biological psychiatry | 29615190 | Biol Psychiatry | 2018 Dec 1 |
| Optimization of immunolabeling and clearing techniques for indelibly labeled memory traces. | Pavlova IP, Shipley SC, Lanio M, Hen R, Denny CA | Hippocampus | 29663578 | Hippocampus | 2018 Jul |
| Prophylactic Ketamine Attenuates Learned Fear. | McGowan JC, LaGamma CT, Lim SC, Tsitsiklis M, Neria Y, Brachman RA, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 28128336 | Neuropsychopharmacology | 2017 Jul |
| Adult-born hippocampal neurons bidirectionally modulate entorhinal inputs into the dentate gyrus. | Luna VM, Anacker C, Burghardt NS, Khandaker H, Andreu V, Millette A, Leary P, Ravenelle R, Jimenez JC, Mastrodonato A, Denny CA, Fenton AA, Scharfman HE, Hen R | Science (New York, N.Y.) | 31073064 | Science | 2019 May 10 |
| Propranolol Decreases Fear Expression by Modulating Fear Memory Traces. | Leal Santos S, Stackmann M, Muñoz Zamora A, Mastrodonato A, De Landri AV, Vaughan N, Chen BK, Lanio M, Denny CA | Biological psychiatry | 33766406 | Biol Psychiatry | 2021 Jun 15 |
| Prophylactic (R,S)-ketamine selectively protects against inflammatory stressors. | Mastrodonato A, Cohensedgh O, LaGamma CT, McGowan JC, Hunsberger HC, Denny CA | Behavioural brain research | 31563463 | Behav Brain Res | 2020 Jan 27 |
| Prophylactic ketamine alters nucleotide and neurotransmitter metabolism in brain and plasma following stress. | McGowan JC, Hill C, Mastrodonato A, LaGamma CT, Kitayev A, Brachman RA, Narain NR, Kiebish MA, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 29599484 | Neuropsychopharmacology | 2018 Aug |
| Distinct hippocampal engrams control extinction and relapse of fear memory. | Lacagnina AF, Brockway ET, Crovetti CR, Shue F, McCarty MJ, Sattler KP, Lim SC, Santos SL, Denny CA, Drew MR | Nature neuroscience | 30936555 | Nat Neurosci | 2019 May |
| Sex-specific neurobiological actions of prophylactic (R,S)-ketamine, (2R,6R)-hydroxynorketamine, and (2S,6S)-hydroxynorketamine. | Chen BK, Luna VM, LaGamma CT, Xu X, Deng SX, Suckow RF, Cooper TB, Shah A, Brachman RA, Mendez-David I, David DJ, Gardier AM, Landry DW, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32417852 | Neuropsychopharmacology | 2020 Aug |
| Traumatic Brain Injury-Induced Fear Generalization in Mice Involves Hippocampal Memory Trace Dysfunction and Is Alleviated by (R,S)-Ketamine. | McGowan JC, Ladner LR, Shubeck CX, Tapia J, LaGamma CT, Anqueira-González A, DeFrancesco A, Chen BK, Hunsberger HC, Sydnor EJ, Logan RW, Yu TS, Kernie SG, Denny CA | Biological psychiatry | 37423591 | Biol Psychiatry | 2024 Jan 1 |
| Activation of local inhibitory circuits in the dentate gyrus by adult-born neurons. | Drew LJ, Kheirbek MA, Luna VM, Denny CA, Cloidt MA, Wu MV, Jain S, Scharfman HE, Hen R | Hippocampus | 26662922 | Hippocampus | 2016 Jun |
| Ketamine as a Prophylactic Against Stress-Induced Depressive-like Behavior. | Brachman RA, McGowan JC, Perusini JN, Lim SC, Pham TH, Faye C, Gardier AM, Mendez-David I, David DJ, Hen R, Denny CA | Biological psychiatry | 26037911 | Biol Psychiatry | 2016 May 1 |
| Hexamodal imaging with porphyrin-phospholipid-coated upconversion nanoparticles. | Rieffel J, Chen F, Kim J, Chen G, Shao W, Shao S, Chitgupi U, Hernandez R, Graves SA, Nickles RJ, Prasad PN, Kim C, Cai W, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 25640213 | Adv Mater | 2015 Mar 11 |
| Sulfonated Polyethylenimine for Photosensitizer Conjugation and Targeting. | Chitgupi U, Zhang Y, Lo CY, Shao S, Song W, Geng J, Neelamegham S, Lovell JF | Bioconjugate chemistry | 26057017 | Bioconjug Chem | 2015 Aug 19 |
| Mechanisms of Light-induced Liposome Permeabilization. | Miranda D, Lovell JF | Bioengineering & translational medicine | 28367505 | Bioeng Transl Med | 2016 Sep |
| Blood Interactions, Pharmacokinetics, and Depth-Dependent Ablation of Rat Mammary Tumors with Photoactivatable, Liposomal Doxorubicin. | Carter KA, Luo D, Geng J, Stern ST, Lovell JF | Molecular cancer therapeutics | 30587558 | Mol Cancer Ther | 2019 Mar |
| An Engineered Biomimetic MPER Peptide Vaccine Induces Weakly HIV Neutralizing Antibodies in Mice. | Shao S, Huang WC, Lin C, Hicar MD, LaBranche CC, Montefiori DC, Lovell JF | Annals of biomedical engineering | 31832930 | Ann Biomed Eng | 2020 Jul |
| Non-invasive multimodal functional imaging of the intestine with frozen micellar naphthalocyanines. | Zhang Y, Jeon M, Rich LJ, Hong H, Geng J, Zhang Y, Shi S, Barnhart TE, Alexandridis P, Huizinga JD, Seshadri M, Cai W, Kim C, Lovell JF | Nature nanotechnology | 24997526 | Nat Nanotechnol | 2014 Aug |
| Trans-illumination intestine projection imaging of intestinal motility in mice. | Wang D, Zhang H, Vu T, Zhan Y, Malhotra A, Wang P, Chitgupi U, Rai A, Zhang S, Wang L, Huizinga JD, Lovell JF, Xia J | Nature communications | 33727562 | Nat Commun | 2021 Mar 16 |
| Clinical development and potential of photothermal and photodynamic therapies for cancer. | Li X, Lovell JF, Yoon J, Chen X | Nature reviews. Clinical oncology | 32699309 | Nat Rev Clin Oncol | 2020 Nov |
| Sound Out the Deep Colors: Photoacoustic Molecular Imaging at New Depths. | Li M, Nyayapathi N, Kilian HI, Xia J, Lovell JF, Yao J | Molecular imaging | 33336621 | Mol Imaging | 2020 Jan-Dec |
| Emerging applications of porphyrins in photomedicine. | Huang H, Song W, Rieffel J, Lovell JF | Frontiers in physics | 28553633 | Front Phys | 2015 Apr |
| Doxorubicin encapsulated in stealth liposomes conferred with light-triggered drug release. | Luo D, Carter KA, Razi A, Geng J, Shao S, Giraldo D, Sunar U, Ortega J, Lovell JF | Biomaterials | 26513413 | Biomaterials | 2016 Jan |
| Sphingomyelin Liposomes Containing Porphyrin-phospholipid for Irinotecan Chemophototherapy. | Carter KA, Luo D, Razi A, Geng J, Shao S, Ortega J, Lovell JF | Theranostics | 27877238 | Theranostics | 2016 |
| Implantable Tin Porphyrin-PEG Hydrogels with pH-Responsive Fluorescence. | Huang H, Chauhan S, Geng J, Qin Y, Watson DF, Lovell JF | Biomacromolecules | 28146351 | Biomacromolecules | 2017 Feb 13 |
| Intrabilayer (64)Cu Labeling of Photoactivatable, Doxorubicin-Loaded Stealth Liposomes. | Luo D, Goel S, Liu HJ, Carter KA, Jiang D, Geng J, Kutyreff CJ, Engle JW, Huang WC, Shao S, Fang C, Cai W, Lovell JF | ACS nano | 29195037 | ACS Nano | 2017 Dec 26 |
| Short Drug-Light Intervals Improve Liposomal Chemophototherapy in Mice Bearing MIA PaCa-2 Xenografts. | Luo D, Carter KA, Geng J, He X, Lovell JF | Molecular pharmaceutics | 29608312 | Mol Pharm | 2018 Sep 4 |
| Surfactant-Stripped Frozen Pheophytin Micelles for Multimodal Gut Imaging. | Zhang Y, Wang D, Goel S, Sun B, Chitgupi U, Geng J, Sun H, Barnhart TE, Cai W, Xia J, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 27396479 | Adv Mater | 2016 Oct |
| Bimodal Targeting Using Sulfonated, Mannosylated PEI for Combined Gene Delivery and Photodynamic Therapy. | Chitgupi U, Li Y, Chen M, Shao S, Beitelshees M, Tan MJ, Neelamegham S, Pfeifer BA, Jones C, Lovell JF | Photochemistry and photobiology | 27935058 | Photochem Photobiol | 2017 Mar |
| Coherent-weighted three-dimensional image reconstruction in linear-array-based photoacoustic tomography. | Wang D, Wang Y, Zhou Y, Lovell JF, Xia J | Biomedical optics express | 27231634 | Biomed Opt Express | 2016 May 1 |
| Axial PEGylation of Tin Octabutoxy Naphthalocyanine Extends Blood Circulation for Photoacoustic Vascular Imaging. | Huang H, Wang D, Zhang Y, Zhou Y, Geng J, Chitgupi U, Cook TR, Xia J, Lovell JF | Bioconjugate chemistry | 27259401 | Bioconjug Chem | 2016 Jul 20 |
| Reversible Micro- and Nano- Phase Programming of Anthraquinone Thermochromism Using Blended Block Copolymers. | Zhang Y, Lovell JF | Langmuir : the ACS journal of surfaces and colloids | 26626998 | Langmuir | 2015 Dec 22 |
| Functionalization of cobalt porphyrin-phospholipid bilayers with his-tagged ligands and antigens. | Shao S, Geng J, Ah Yi H, Gogia S, Neelamegham S, Jacobs A, Lovell JF | Nature chemistry | 25901823 | Nat Chem | 2015 May |
| Naphthalocyanines as contrast agents for photoacoustic and multimodal imaging. | Chitgupi U, Lovell JF | Biomedical engineering letters | 30603204 | Biomed Eng Lett | 2018 May |
| Ingestible roasted barley for contrast-enhanced photoacoustic imaging in animal and human subjects. | Wang D, Lee DH, Huang H, Vu T, Lim RSA, Nyayapathi N, Chitgupi U, Liu M, Geng J, Xia J, Lovell JF | Biomaterials | 29803105 | Biomaterials | 2018 Aug |
| Antigen Engineering Approaches for Lyme Disease Vaccines. | Federizon J, Lin YP, Lovell JF | Bioconjugate chemistry | 30987418 | Bioconjug Chem | 2019 May 15 |
| Engineered Nanoparticle Applications for Recombinant Influenza Vaccines. | Sia ZR, Miller MS, Lovell JF | Molecular pharmaceutics | 32787280 | Mol Pharm | 2021 Feb 1 |
| Photoactivation of sulfonated polyplexes enables localized gene silencing by DsiRNA in breast cancer cells. | Puri A, Viard M, Zakrevsky P, Zampino S, Chen A, Isemann C, Alvi S, Clogston J, Chitgupi U, Lovell JF, Shapiro BA | Nanomedicine : nanotechnology, biology, and medicine | 32151748 | Nanomedicine | 2020 Jun |
| Antibody response of a particle-inducing, liposome vaccine adjuvant admixed with a Pfs230 fragment. | Huang WC, Deng B, Seffouh A, Ortega J, Long CA, Suresh RV, He X, Miura K, Lee SM, Wu Y, Lovell JF | NPJ vaccines | 32218995 | NPJ Vaccines | 2020 |
| Immunogenicity of the Lyme disease antigen OspA, particleized by cobalt porphyrin-phospholipid liposomes. | Federizon J, Frye A, Huang WC, Hart TM, He X, Beltran C, Marcinkiewicz AL, Mainprize IL, Wills MKB, Lin YP, Lovell JF | Vaccine | 31727504 | Vaccine | 2020 Jan 22 |
| Membrane Disruption by Very Long Chain Fatty Acids during Necroptosis. | Parisi LR, Sowlati-Hashjin S, Berhane IA, Galster SL, Carter KA, Lovell JF, Chemler SR, Karttunen M, Atilla-Gokcumen GE | ACS chemical biology | 31490656 | ACS Chem Biol | 2019 Oct 18 |
| Highly-Soluble Cyanine J-aggregates Entrapped by Liposomes for In Vivo Optical Imaging around 930 nm. | Miranda D, Huang H, Kang H, Zhan Y, Wang D, Zhou Y, Geng J, Kilian HI, Stiles W, Razi A, Ortega J, Xia J, Choi HS, Lovell JF | Theranostics | 30809281 | Theranostics | 2019 |
| A surfactant-stripped cabazitaxel micelle formulation optimized with accelerated storage stability. | Sun B, Jing H, Mabrouk MT, Zhang Y, Jin H, Lovell JF | Pharmaceutical development and technology | 32892678 | Pharm Dev Technol | 2020 Dec |
| Surfactant-stripped naphthalocyanines for multimodal tumor theranostics with upconversion guidance cream. | Zhang Y, Hong H, Sun B, Carter K, Qin Y, Wei W, Wang D, Jeon M, Geng J, Nickles RJ, Chen G, Prasad PN, Kim C, Xia J, Cai W, Lovell JF | Nanoscale | 28247896 | Nanoscale | 2017 Mar 9 |
| Porphyrin-phospholipid liposomes permeabilized by near-infrared light. | Carter KA, Shao S, Hoopes MI, Luo D, Ahsan B, Grigoryants VM, Song W, Huang H, Zhang G, Pandey RK, Geng J, Pfeifer BA, Scholes CP, Ortega J, Karttunen M, Lovell JF | Nature communications | 24699423 | Nat Commun | 2014 Apr 3 |
| Dual-color photoacoustic lymph node imaging using nanoformulated naphthalocyanines. | Lee C, Kim J, Zhang Y, Jeon M, Liu C, Song L, Lovell JF, Kim C | Biomaterials | 26408999 | Biomaterials | 2015 Dec |
| A porphyrin-PEG polymer with rapid renal clearance. | Huang H, Hernandez R, Geng J, Sun H, Song W, Chen F, Graves SA, Nickles RJ, Cheng C, Cai W, Lovell JF | Biomaterials | 26517562 | Biomaterials | 2016 Jan |
| Recent Advances in Higher-Order, Multimodal, Biomedical Imaging Agents. | Rieffel J, Chitgupi U, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 26185099 | Small | 2015 Sep 16 |
| Directed vaccination against pneumococcal disease. | Li Y, Hill A, Beitelshees M, Shao S, Lovell JF, Davidson BA, Knight PR 3rd, Hakansson AP, Pfeifer BA, Jones CH | Proceedings of the National Academy of Sciences of the United States of America | 27274071 | Proc Natl Acad Sci U S A | 2016 Jun 21 |
| Design of Hydrated Porphyrin-Phospholipid Bilayers with Enhanced Magnetic Resonance Contrast. | Shao S, Do TN, Razi A, Chitgupi U, Geng J, Alsop RJ, Dzikovski BG, Rheinstädter MC, Ortega J, Karttunen M, Spernyak JA, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 27739249 | Small | 2017 Jan |
| Therapeutic surfactant-stripped frozen micelles. | Zhang Y, Song W, Geng J, Chitgupi U, Unsal H, Federizon J, Rzayev J, Sukumaran DK, Alexandridis P, Lovell JF | Nature communications | 27193558 | Nat Commun | 2016 May 19 |
| Nanomedical engineering: shaping future nanomedicines. | Luo D, Carter KA, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 25377691 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2015 Mar-Apr |
| Enhanced drug delivery using sonoactivatable liposomes with membrane-embedded porphyrins. | Wang X, Yan F, Liu X, Wang P, Shao S, Sun Y, Sheng Z, Liu Q, Lovell JF, Zheng H | Journal of controlled release : official journal of the Controlled Release Society | 30075210 | J Control Release | 2018 Sep 28 |
| Metalloporphyrin Nanoparticles: Coordinating Diverse Theranostic Functions. | Shao S, Rajendiran V, Lovell JF | Coordination chemistry reviews | 30559508 | Coord Chem Rev | 2019 Jan 15 |
| Pharmacokinetics and pharmacodynamics of liposomal chemophototherapy with short drug-light intervals. | Luo D, Carter KA, Molins EAG, Straubinger NL, Geng J, Shao S, Jusko WJ, Straubinger RM, Lovell JF | Journal of controlled release : official journal of the Controlled Release Society | 30684512 | J Control Release | 2019 Mar 10 |
| Advanced Functional Nanomaterials for Theranostics. | Huang H, Lovell JF | Advanced functional materials | 28824357 | Adv Funct Mater | 2017 Jan 12 |
| Liposomal formulations of photosensitizers. | Ghosh S, Carter KA, Lovell JF | Biomaterials | 31336279 | Biomaterials | 2019 Oct |
| Indocyanine green binds to DOTAP liposomes for enhanced optical properties and tumor photoablation. | Miranda D, Wan C, Kilian HI, Mabrouk MT, Zhou Y, Jin H, Lovell JF | Biomaterials science | 31232421 | Biomater Sci | 2019 Aug 1 |
| Loading and Releasing Ciprofloxacin in Photoactivatable Liposomes. | Ghosh S, Qi R, Carter KA, Zhang G, Pfeifer BA, Lovell JF | Biochemical engineering journal | 31105464 | Biochem Eng J | 2019 Jan 15 |
| Surfactant-Stripped Micelles for NIR-II Photoacoustic Imaging through 12 cm of Breast Tissue and Whole Human Breasts. | Chitgupi U, Nyayapathi N, Kim J, Wang D, Sun B, Li C, Carter K, Huang WC, Kim C, Xia J, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 31414515 | Adv Mater | 2019 Oct |
| A Phosphorus Phthalocyanine Formulation with Intense Absorbance at 1000 nm for Deep Optical Imaging. | Zhou Y, Wang D, Zhang Y, Chitgupi U, Geng J, Wang Y, Zhang Y, Cook TR, Xia J, Lovell JF | Theranostics | 27022416 | Theranostics | 2016 |
| Slit-enabled linear-array photoacoustic tomography with near isotropic spatial resolution in three dimensions. | Wang Y, Wang D, Zhang Y, Geng J, Lovell JF, Xia J | Optics letters | 26696175 | Opt Lett | 2016 Jan 1 |
| Pd-porphyrin-cross-linked implantable hydrogels with oxygen-responsive phosphorescence. | Huang H, Song W, Chen G, Reynard JM, Ohulchanskyy TY, Prasad PN, Bright FV, Lovell JF | Advanced healthcare materials | 24259519 | Adv Healthc Mater | 2014 Jun |
| Folate-Targeted Nanoliposomal Chemophototherapy. | Chitgupi U, Qin Y, Ghosh S, Quinn B, Carter K, He X, Sunar U, Lovell JF | Pharmaceutics | 37896144 | Pharmaceutics | 2023 Sep 26 |
| Surfactant-Stripped Pheophytin Micelles for Multimodal Tumor Imaging and Photodynamic Therapy. | Moukheiber D, Chitgupi U, Carter KA, Luo D, Sun B, Goel S, Ferreira CA, Engle JW, Wang D, Geng J, Zhang Y, Xia J, Cai W, Lovell JF | ACS applied bio materials | 31853516 | ACS Appl Bio Mater | 2019 Jan 22 |
| Binding of an amphiphilic phthalocyanine to pre-formed liposomes confers light-triggered cargo release. | Macháček M, Carter KA, Kostelanský F, Miranda D, Seffouh A, Ortega J, Šimůnek T, Zimčík P, Lovell JF | Journal of materials chemistry. B | 30984399 | J Mater Chem B | 2018 Nov 28 |
| Rapid Light-Triggered Drug Release in Liposomes Containing Small Amounts of Unsaturated and Porphyrin-Phospholipids. | Luo D, Li N, Carter KA, Lin C, Geng J, Shao S, Huang WC, Qin Y, Atilla-Gokcumen GE, Lovell JF | Small (Weinheim an der Bergstrasse, Germany) | 27121003 | Small | 2016 Jun |
| Recent applications of phthalocyanines and naphthalocyanines for imaging and therapy. | Zhang Y, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 27439671 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2017 Jan |
| Metal Chelation Modulates Phototherapeutic Properties of Mitoxantrone-Loaded Porphyrin-Phospholipid Liposomes. | Carter KA, Wang S, Geng J, Luo D, Shao S, Lovell JF | Molecular pharmaceutics | 26691879 | Mol Pharm | 2016 Feb 1 |
| Chemophototherapy: An Emerging Treatment Option for Solid Tumors. | Luo D, Carter KA, Miranda D, Lovell JF | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 28105389 | Adv Sci (Weinh) | 2017 Jan |
| Multifunctional Liposomes for Image-Guided Intratumoral Chemo-Phototherapy. | Miranda D, Carter K, Luo D, Shao S, Geng J, Li C, Chitgupi U, Turowski SG, Li N, Atilla-Gokcumen GE, Spernyak JA, Lovell JF | Advanced healthcare materials | 28504409 | Adv Healthc Mater | 2017 Aug |
| Assessing Photosensitizer Targeting Using Meso-Tetra(Carboxyphenyl) Porphyrin. | Chitgupi U, Lovell JF, Rajendiran V | Molecules (Basel, Switzerland) | 29649139 | Molecules | 2018 Apr 12 |
| A malaria vaccine adjuvant based on recombinant antigen binding to liposomes. | Huang WC, Deng B, Lin C, Carter KA, Geng J, Razi A, He X, Chitgupi U, Federizon J, Sun B, Long CA, Ortega J, Dutta S, King CR, Miura K, Lee SM, Lovell JF | Nature nanotechnology | 30297818 | Nat Nanotechnol | 2018 Dec |
| Porphyrin-phospholipid liposomes with tunable leakiness. | Luo D, Carter KA, Razi A, Geng J, Shao S, Lin C, Ortega J, Lovell JF | Journal of controlled release : official journal of the Controlled Release Society | 26578438 | J Control Release | 2015 Dec 28 |
| Facile formulation of a long-wavelength cyanine for optical imaging in the second near-infrared window. | Kilian HI , Kang H , Nyayapathi N , Fukuda T , Adluru E , Zhang H , Quinn B , Xia J , Choi HS , Lovell JF | Biomaterials science | 32515752 | Biomater Sci | 2020 Aug 7 |
| Vessel-Targeted Chemophototherapy with Cationic Porphyrin-Phospholipid Liposomes. | Luo D, Geng J, Li N, Carter KA, Shao S, Atilla-Gokcumen GE, Lovell JF | Molecular cancer therapeutics | 28729400 | Mol Cancer Ther | 2017 Nov |
| Does the declining lethality of gunshot injuries mask a rising epidemic of gun violence in the United States? | Jena AB, Sun EC, Prasad V | Journal of general internal medicine | 24452421 | J Gen Intern Med | 2014 Jul |
| Chronic Disease Prevalence and Healthy Lifestyle Behaviors Among US Health Care Professionals. | Dayoub E, Jena AB | Mayo Clinic proceedings | 26422242 | Mayo Clin Proc | 2015 Dec |
| The Trade-off Between Speed and Safety in Drug Approvals. | Jena AB, Zhang J, Lakdawalla DN | JAMA oncology | 27684643 | JAMA Oncol | 2017 Nov 1 |
| Association between rainfall and diagnoses of joint or back pain: retrospective claims analysis. | Jena AB, Olenski AR, Molitor D, Miller N | BMJ (Clinical research ed.) | 29237605 | BMJ | 2017 Dec 13 |
| Association between physician US News & World Report medical school ranking and patient outcomes and costs of care: observational study. | Tsugawa Y, Blumenthal DM, Jha AK, Orav EJ, Jena AB | BMJ (Clinical research ed.) | 30257919 | BMJ | 2018 Sep 26 |
| Attention Deficit-Hyperactivity Disorder and Month of School Enrollment. | Layton TJ, Barnett ML, Hicks TR, Jena AB | The New England journal of medicine | 30485780 | N Engl J Med | 2018 Nov 29 |
| Association of residency work hour reform with long term quality and costs of care of US physicians: observational study. | Jena AB, Farid M, Blumenthal D, Bhattacharya J | BMJ (Clinical research ed.) | 31292124 | BMJ | 2019 Jul 10 |
| Medical professional liability risk among US cardiologists. | Mangalmurti S, Seabury SA, Chandra A, Lakdawalla D, Oetgen WJ, Jena AB | American heart journal | 24766979 | Am Heart J | 2014 May |
| Association between treatment toxicity and outcomes in oncology clinical trials. | Abola MV, Prasad V, Jena AB | Annals of oncology : official journal of the European Society for Medical Oncology | 25193993 | Ann Oncol | 2014 Nov |
| Opioid prescribing by multiple providers in Medicare: retrospective observational study of insurance claims. | Jena AB, Goldman D, Weaver L, Karaca-Mandic P | BMJ (Clinical research ed.) | 24553363 | BMJ | 2014 Feb 19 |
| Decline and Rebound in Routine Cancer Screening Rates During the COVID-19 Pandemic. | McBain RK, Cantor JH, Jena AB, Pera MF, Bravata DM, Whaley CM | Journal of general internal medicine | 33742300 | J Gen Intern Med | 2021 Jun |
| Identifying outlier patterns of inconsistent ambulance billing in Medicare. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Health services research | 33492665 | Health Serv Res | 2021 Apr |
| Does medicine run in the family-evidence from three generations of physicians in Sweden: retrospective observational study. | Polyakova M, Persson P, Hofmann K, Jena AB | BMJ (Clinical research ed.) | 33328192 | BMJ | 2020 Dec 16 |
| Trends in New Diagnoses of Atrial Fibrillation After Release of an ECG-Capable Smartwatch. | Zimerman A, Sheridan B, Cooke S, Jena AB | Circulation | 32833515 | Circulation | 2020 Aug 25 |
| Patient Mortality During Unannounced Accreditation Surveys at US Hospitals. | Barnett ML, Olenski AR, Jena AB | JAMA internal medicine | 28319229 | JAMA Intern Med | 2017 May 1 |
| Sex Differences in Faculty Rank Among Academic Cardiologists in the United States. | Blumenthal DM, Olenski AR, Yeh RW, DeFaria Yeh D, Sarma A, Stefanescu Schmidt AC, Wood MJ, Jena AB | Circulation | 28153987 | Circulation | 2017 Feb 7 |
| Reducing prognostic errors: a new imperative in quality healthcare. | Khullar D, Jena AB | BMJ (Clinical research ed.) | 26993146 | BMJ | 2016 Mar 18 |
| Sex Differences in Physician Salary in US Public Medical Schools. | Jena AB, Olenski AR, Blumenthal DM | JAMA internal medicine | 27400435 | JAMA Intern Med | 2016 Sep 1 |
| Characteristics of Physicians Who Adopted Medicare's New Advance Care Planning Codes in the First Year. | Tsugawa Y, Kato H, Jha AK, Wenger NS, Zingmond DS, Gross N, Jena AB | Journal of general internal medicine | 31637655 | J Gen Intern Med | 2020 Jun |
| Mandatory use of prescription drug monitoring programs. | Haffajee RL, Jena AB, Weiner SG | JAMA | 25622279 | JAMA | 2015 Mar 3 |
| Hospital Prescribing of Opioids to Medicare Beneficiaries. | Jena AB, Goldman D, Karaca-Mandic P | JAMA internal medicine | 27294595 | JAMA Intern Med | 2016 Jul 1 |
| Outcomes of Basic Versus Advanced Life Support for Out-of-Hospital Medical Emergencies. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Annals of internal medicine | 27380156 | Ann Intern Med | 2016 Jul 5 |
| Regression discontinuity designs in healthcare research. | Venkataramani AS, Bor J, Jena AB | BMJ (Clinical research ed.) | 26977086 | BMJ | 2016 Mar 14 |
| Do heads of government age more quickly? Observational study comparing mortality between elected leaders and runners-up in national elections of 17 countries. | Olenski AR, Abola MV, Jena AB | BMJ (Clinical research ed.) | 26666894 | BMJ | 2015 Dec 14 |
| Association between use of warfarin with common sulfonylureas and serious hypoglycemic events: retrospective cohort analysis. | Romley JA, Gong C, Jena AB, Goldman DP, Williams B, Peters A | BMJ (Clinical research ed.) | 26643108 | BMJ | 2015 Dec 7 |
| Outcomes after out-of-hospital cardiac arrest treated by basic vs advanced life support. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | JAMA internal medicine | 25419698 | JAMA Intern Med | 2015 Feb |
| Rates and Characteristics of Paid Malpractice Claims Among US Physicians by Specialty, 1992-2014. | Schaffer AC, Jena AB, Seabury SA, Singh H, Chalasani V, Kachalia A | JAMA internal medicine | 28346582 | JAMA Intern Med | 2017 May 1 |
| Golf habits among physicians and surgeons: observational cohort study. | Koplewitz G, Blumenthal DM, Gross N, Hicks T, Jena AB | BMJ (Clinical research ed.) | 30530803 | BMJ | 2018 Dec 10 |
| Careful use of science to advance the debate on the UK Cancer Drugs Fund. | Lakdawalla DN, Jena AB, Doctor JN | JAMA | 24381964 | JAMA | 2014 Jan 1 |
| Acute Myocardial Infarction Mortality During Dates of National Interventional Cardiology Meetings. | Jena AB, Olenski A, Blumenthal DM, Yeh RW, Goldman DP, Romley J | Journal of the American Heart Association | 29523525 | J Am Heart Assoc | 2018 Mar 9 |
| Tying Reimbursement to Outcomes Is an Ideal Strategy for PCSK9 Inhibitors. | Blumenthal DM, Goldman D, Jena AB | JAMA cardiology | 28854318 | JAMA Cardiol | 2017 Oct 1 |
| Association Between Playing American Football in the National Football League and Long-term Mortality. | Venkataramani AS, Gandhavadi M, Jena AB | JAMA | 29392304 | JAMA | 2018 Feb 27 |
| Does Medical Malpractice Law Improve Health Care Quality? | Frakes M, Jena AB | Journal of public economics | 28479642 | J Public Econ | 2016 Nov |
| Physician age and outcomes in elderly patients in hospital in the US: observational study. | Tsugawa Y, Newhouse JP, Zaslavsky AM, Blumenthal DM, Jena AB | BMJ (Clinical research ed.) | 28512089 | BMJ | 2017 May 16 |
| Variation in Physician Spending and Association With Patient Outcomes. | Tsugawa Y, Jha AK, Newhouse JP, Zaslavsky AM, Jena AB | JAMA internal medicine | 28288254 | JAMA Intern Med | 2017 May 1 |
| Incidence of sexually transmitted infections after human papillomavirus vaccination among adolescent females. | Jena AB, Goldman DP, Seabury SA | JAMA internal medicine | 25664968 | JAMA Intern Med | 2015 Apr |
| Sex Differences in Academic Rank in US Medical Schools in 2014. | Jena AB, Khullar D, Ho O, Olenski AR, Blumenthal DM | JAMA | 26372584 | JAMA | 2015 Sep 15 |
| Reducing Diagnostic Errors--Why Now? | Khullar D, Jha AK, Jena AB | The New England journal of medicine | 26397948 | N Engl J Med | 2015 Dec 24 |
| Association of a Clinician's Antibiotic-Prescribing Rate With Patients' Future Likelihood of Seeking Care and Receipt of Antibiotics. | Shi Z, Barnett ML, Jena AB, Ray KN, Fox KP, Mehrotra A | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 32777032 | Clin Infect Dis | 2021 Oct 5 |
| Gender differences in how scientists present the importance of their research: observational study. | Lerchenmueller MJ, Sorenson O, Jena AB | BMJ (Clinical research ed.) | 31843745 | BMJ | 2019 Dec 16 |
| The need for speed: observational study of physician driving behaviors. | Zimerman A, Worsham C, Woo J, Jena AB | BMJ (Clinical research ed.) | 31852682 | BMJ | 2019 Dec 18 |
| The declining demand for hospital care as a rationale for duty hour reform. | Jena AB, DePasse JW, Prasad V | Journal of general internal medicine | 24866469 | J Gen Intern Med | 2014 Oct |
| Birth Month and Influenza Vaccination in Children. | Worsham C, Woo J, Jena AB | The New England journal of medicine | 32640138 | N Engl J Med | 2020 Jul 9 |
| Association of Grit Scores With Treatment Adherence and Biomarkers in Patients With Type 2 Diabetes. | Peña PA, Pérez-Díaz I, Pulido-Ayala AK, Osorio-Landa HK, López-Navarro JM, Duckworth AL, Jena AB | JAMA network open | 31517961 | JAMA Netw Open | 2019 Sep 4 |
| U.S. Immigration Policy and American Medical Research: The Scientific Contributions of Foreign Medical Graduates. | Khullar D, Blumenthal DM, Olenski AR, Jena AB | Annals of internal medicine | 28973126 | Ann Intern Med | 2017 Oct 17 |
| Opioid-Prescribing Patterns of Emergency Physicians and Risk of Long-Term Use. | Barnett ML, Olenski AR, Jena AB | The New England journal of medicine | 28199807 | N Engl J Med | 2017 Feb 16 |
| The association between physician turnover (the "July Effect") and survival after in-hospital cardiac arrest. | Myers L, Mikhael B, Currier P, Berg K, Jena A, Donnino M, Andersen LW, American Heart Association’s Get with the Guidelines-Resuscitation Investigators | Resuscitation | 28285032 | Resuscitation | 2017 May |
| Outcomes of Basic Versus Advanced Life Support for Out-of-Hospital Medical Emergencies. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Annals of internal medicine | 26457627 | Ann Intern Med | 2015 Nov 3 |
| Mortality and treatment patterns among patients hospitalized with acute cardiovascular conditions during dates of national cardiology meetings. | Jena AB, Prasad V, Goldman DP, Romley J | JAMA internal medicine | 25531231 | JAMA Intern Med | 2015 Feb |
| Authorship Inflation in Medical Publications. | Tilak G, Prasad V, Jena AB | Inquiry : a journal of medical care organization, provision and financing | 26228035 | Inquiry | 2015 |
| The Impact of the US Food and Drug Administration Chlorofluorocarbon Ban on Out-of-pocket Costs and Use of Albuterol Inhalers Among Individuals With Asthma. | Jena AB, Ho O, Goldman DP, Karaca-Mandic P | JAMA internal medicine | 25962128 | JAMA Intern Med | 2015 Jul |
| Exposing physicians to reduced residency work hours did not adversely affect patient outcomes after residency. | Jena AB, Schoemaker L, Bhattacharya J | Health affairs (Project Hope) | 25288430 | Health Aff (Millwood) | 2014 Oct |
| Medical malpractice reform: noneconomic damages caps reduced payments 15 percent, with varied effects by specialty. | Seabury SA, Helland E, Jena AB | Health affairs (Project Hope) | 25339633 | Health Aff (Millwood) | 2014 Nov |
| Association of Overlapping Surgery With Perioperative Outcomes. | Sun E, Mello MM, Rishel CA, Vaughn MT, Kheterpal S, Saager L, Fleisher LA, Damrose EJ, Kadry B, Jena AB, Multicenter Perioperative Outcomes Group (MPOG) | JAMA | 30806696 | JAMA | 2019 Feb 26 |
| Patterns of Potential Opioid Misuse and Subsequent Adverse Outcomes in Medicare, 2008 to 2012. | Carey CM, Jena AB, Barnett ML | Annals of internal medicine | 29800019 | Ann Intern Med | 2018 Jun 19 |
| Association Between Treatment by Locum Tenens Internal Medicine Physicians and 30-Day Mortality Among Hospitalized Medicare Beneficiaries. | Blumenthal DM, Olenski AR, Tsugawa Y, Jena AB | JAMA | 29209722 | JAMA | 2017 Dec 5 |
| Early death after discharge from emergency departments: analysis of national US insurance claims data. | Obermeyer Z, Cohn B, Wilson M, Jena AB, Cutler DM | BMJ (Clinical research ed.) | 28148486 | BMJ | 2017 Feb 1 |
| Quality of care delivered by general internists in US hospitals who graduated from foreign versus US medical schools: observational study. | Tsugawa Y, Jena AB, Orav EJ, Jha AK | BMJ (Clinical research ed.) | 28153977 | BMJ | 2017 Feb 2 |
| Prescription Patterns of Family Members After Discontinued Opioid or Benzodiazepine Therapy of Users. | Barnett ML, Hicks TR, Jena AB | JAMA internal medicine | 31260053 | JAMA Intern Med | 2019 Sep 1 |
| Characteristics of Physicians Excluded From US Medicare and State Public Insurance Programs for Fraud, Health Crimes, or Unlawful Prescribing of Controlled Substances. | Chen A, Blumenthal DM, Jena AB | JAMA network open | 30646294 | JAMA Netw Open | 2018 Dec 7 |
| Comparison of Anesthesia Times and Billing Patterns by Anesthesia Practitioners. | Sun EC, Dutton RP, Jena AB | JAMA network open | 30646351 | JAMA Netw Open | 2018 Nov 2 |
| Trends in the Price per Median and Mean Life-Year Gained Among Newly Approved Cancer Therapies 1995 to 2017. | Chen AJ, Hu X, Conti RM, Jena AB, Goldman DP | Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research | 31806195 | Value Health | 2019 Dec |
| Patient and provider-level factors associated with changes in utilization of treatments in response to evidence on ineffectiveness or harm. | Smith LB, Desai NR, Dowd B, Everhart A, Herrin J, Higuera L, Jeffery MM, Jena AB, Ross JS, Shah ND, Karaca-Mandic P | International journal of health economics and management | 32350680 | Int J Health Econ Manag | 2020 Sep |
| Physician Network Connections Associated With Faster De-Adoption of Dronedarone for Permanent Atrial Fibrillation. | Stecher C, Everhart A, Smith LB, Jena A, Ross JS, Desai NR, Shah N, Karaca-Mandic P | Circulation. Cardiovascular quality and outcomes | 34555928 | Circ Cardiovasc Qual Outcomes | 2021 Oct |
| Factors Associated with Psychiatrist Opt-out from US Medicare: an Observational Study. | Yu J, Jena AB, Mandic PK, Golberstein E | Journal of general internal medicine | 31420824 | J Gen Intern Med | 2019 Nov |
| College affirmative action bans and smoking and alcohol use among underrepresented minority adolescents in the United States: A difference-in-differences study. | Venkataramani AS, Cook E, O'Brien RL, Kawachi I, Jena AB, Tsai AC | PLoS medicine | 31211777 | PLoS Med | 2019 Jun |
| Does Pain Lead to Tachycardia? Revisiting the Association Between Self-reported Pain and Heart Rate in a National Sample of Urgent Emergency Department Visits. | Dayoub EJ, Jena AB | Mayo Clinic proceedings | 26250732 | Mayo Clin Proc | 2015 Aug |
| Screening Mammography for Free: Impact of Eliminating Cost Sharing on Cancer Screening Rates. | Jena AB, Huang J, Fireman B, Fung V, Gazelle S, Landrum MB, Chernew M, Newhouse JP, Hsu J | Health services research | 26990550 | Health Serv Res | 2017 Feb |
| The Peltzman effect and compensatory markers in medicine. | Prasad V, Jena AB | Healthcare (Amsterdam, Netherlands) | 25396116 | Healthc (Amst) | 2014 Sep 1 |
| Differences in incomes of physicians in the United States by race and sex: observational study. | Ly DP, Seabury SA, Jena AB | BMJ (Clinical research ed.) | 27268490 | BMJ | 2016 Jun 7 |
| Proportion of Non-US-Born and Noncitizen Health Care Professionals in the United States in 2016. | Patel YM, Ly DP, Hicks T, Jena AB | JAMA | 30512091 | JAMA | 2018 Dec 4 |
| A Health Plan's Formulary Led To Reduced Use Of Extended-Release Opioids But Did Not Lower Overall Opioid Use. | Barnett ML, Olenski AR, Thygeson NM, Ishisaka D, Wong S, Jena AB, Mehrotra A | Health affairs (Project Hope) | 30179550 | Health Aff (Millwood) | 2018 Sep |
| Comparison of Hospital Mortality and Readmission Rates for Medicare Patients Treated by Male vs Female Physicians. | Tsugawa Y, Jena AB, Figueroa JF, Orav EJ, Blumenthal DM, Jha AK | JAMA internal medicine | 27992617 | JAMA Intern Med | 2017 Feb 1 |
| Health and Health Care Use Among Individuals at Risk to Lose Health Insurance With Repeal of the Affordable Care Act. | Karaca-Mandic P, Jena AB, Ross JS | JAMA internal medicine | 28114528 | JAMA Intern Med | 2017 Apr 1 |
| Distribution of Prescription Opioid Use Among Privately Insured Adults Without Cancer: United States, 2001 to 2013. | Sun EC, Jena AB | Annals of internal medicine | 28892817 | Ann Intern Med | 2017 Nov 7 |
| Sex Differences in Time Spent on Household Activities and Care of Children Among US Physicians, 2003-2016. | Ly DP, Jena AB | Mayo Clinic proceedings | 29673711 | Mayo Clin Proc | 2018 Oct |
| Mortality among high-risk patients with acute myocardial infarction admitted to U.S. teaching-intensive hospitals in July: a retrospective observational study. | Jena AB, Sun EC, Romley JA | Circulation | 24152859 | Circulation | 2013 Dec 24 |
| Access, quality, and costs of care at physician owned hospitals in the United States: observational study. | Blumenthal DM, Orav EJ, Jena AB, Dudzinski DM, Le ST, Jha AK | BMJ (Clinical research ed.) | 26333819 | BMJ | 2015 Sep 2 |
| Physician spending and subsequent risk of malpractice claims: observational study. | Jena AB, Schoemaker L, Bhattacharya J, Seabury SA | BMJ (Clinical research ed.) | 26538498 | BMJ | 2015 Nov 4 |
| Turning evidence into practice under payment reform: the new frontier of translational science. | Jena AB, Stevens W, McWilliams JM | Journal of general internal medicine | 25092013 | J Gen Intern Med | 2014 Nov |
| Long-term effects of the 2003 ACGME resident duty hour reform on hospital mortality. | Jena AB, Prasad V, Romley JA | Mayo Clinic proceedings | 24996240 | Mayo Clin Proc | 2014 Jul |
| Longitudinal analyses of gender differences in first authorship publications related to COVID-19. | Lerchenmüller C, Schmallenbach L, Jena AB, Lerchenmueller MJ | BMJ open | 33820790 | BMJ Open | 2021 Apr 5 |
| Behavioral Heuristics in Coronary-Artery Bypass Graft Surgery. | Olenski AR, Zimerman A, Coussens S, Jena AB | The New England journal of medicine | 32074429 | N Engl J Med | 2020 Feb 20 |
| Outcomes-Based Pricing as a Tool to Ensure Access to Novel but Expensive Biopharmaceuticals. | Blumenthal DM, Goldman DP, Jena AB | Annals of internal medicine | 27951598 | Ann Intern Med | 2017 Feb 7 |
| Utilization of Telemedicine Among Rural Medicare Beneficiaries. | Mehrotra A, Jena AB, Busch AB, Souza J, Uscher-Pines L, Landon BE | JAMA | 27163991 | JAMA | 2016 May 10 |
| Divorce among physicians and other healthcare professionals in the United States: analysis of census survey data. | Ly DP, Seabury SA, Jena AB | BMJ (Clinical research ed.) | 25694110 | BMJ | 2015 Feb 18 |
| Adverse inpatient outcomes during the transition to a new electronic health record system: observational study. | Barnett ML, Mehrotra A, Jena AB | BMJ (Clinical research ed.) | 27471242 | BMJ | 2016 Jul 28 |
| Delays in Emergency Care and Mortality during Major U.S. Marathons. | Jena AB, Mann NC, Wedlund LN, Olenski A | The New England journal of medicine | 28402772 | N Engl J Med | 2017 Apr 13 |
| Patient mortality after surgery on the surgeon's birthday: observational study. | Kato H, Jena AB, Tsugawa Y | BMJ (Clinical research ed.) | 34913872 | BMJ | 2020 Dec 10 |
| Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation. | Weinberg DE, Shah P, Eichhorn SW, Hussmann JA, Plotkin JB, Bartel DP | Cell reports | 26876183 | Cell Rep | 2016 Feb 23 |
| CAT-tailing as a fail-safe mechanism for efficient degradation of stalled nascent polypeptides. | Kostova KK, Hickey KL, Osuna BA, Hussmann JA, Frost A, Weinberg DE, Weissman JS | Science (New York, N.Y.) | 28751611 | Science | 2017 Jul 28 |
| miCLIP-MaPseq Identifies Substrates of Radical SAM RNA-Methylating Enzyme Using Mechanistic Cross-Linking and Mismatch Profiling. | Stojković V, Weinberg DE, Fujimori DG | Methods in molecular biology (Clifton, N.J.) | 34085241 | Methods Mol Biol | 2021 |
| The fail-safe mechanism of post-transcriptional silencing of unspliced HAC1 mRNA. | Di Santo R, Aboulhouda S, Weinberg DE | eLife | 27692069 | Elife | 2016 Oct 1 |
| Accurate, Streamlined Analysis of mRNA Translation by Sucrose Gradient Fractionation. | Aboulhouda S, Di Santo R, Therizols G, Weinberg D | Bio-protocol | 29170751 | Bio Protoc | 2017 Oct 5 |
| Perinatal Licensing of Thermogenesis by IL-33 and ST2. | Odegaard JI, Lee MW, Sogawa Y, Bertholet AM, Locksley RM, Weinberg DE, Kirichok Y, Deo RC, Chawla A | Cell | 27453471 | Cell | 2016 Aug 11 |
| miCLIP-MaPseq, a Substrate Identification Approach for Radical SAM RNA Methylating Enzymes. | Stojković V, Chu T, Therizols G, Weinberg DE, Fujimori DG | Journal of the American Chemical Society | 29782154 | J Am Chem Soc | 2018 Jun 13 |
| Codon optimality is a major determinant of mRNA stability. | Presnyak V, Alhusaini N, Chen YH, Martin S, Morris N, Kline N, Olson S, Weinberg D, Baker KE, Graveley BR, Coller J | Cell | 25768907 | Cell | 2015 Mar 12 |
| In vitro analysis of RQC activities provides insights into the mechanism and function of CAT tailing. | Osuna BA, Howard CJ, Kc S, Frost A, Weinberg DE | eLife | 28718767 | Elife | 2017 Jul 18 |
| Identification of cryptic subunits from an apicomplexan ATP synthase. | Huet D, Rajendran E, van Dooren GG, Lourido S | eLife | 30204085 | Elife | 2018 Sep 11 |
| Alveolar proteins stabilize cortical microtubules in Toxoplasma gondii. | Harding CR, Gow M, Kang JH, Shortt E, Manalis SR, Meissner M, Lourido S | Nature communications | 30674885 | Nat Commun | 2019 Jan 23 |
| Plate-Based Quantification of Stimulated Toxoplasma Egress. | Shortt E, Lourido S | Methods in molecular biology (Clifton, N.J.) | 31758453 | Methods Mol Biol | 2020 |
| Genome-wide screens identify Toxoplasma gondii determinants of parasite fitness in IFNγ-activated murine macrophages. | Wang Y, Sangaré LO, Paredes-Santos TC, Hassan MA, Krishnamurthy S, Furuta AM, Markus BM, Lourido S, Saeij JPJ | Nature communications | 33067458 | Nat Commun | 2020 Oct 16 |
| The calcium signaling toolkit of the Apicomplexan parasites Toxoplasma gondii and Plasmodium spp. | Lourido S, Moreno SN | Cell calcium | 25605521 | Cell Calcium | 2015 Mar |
| Allosteric activation of apicomplexan calcium-dependent protein kinases. | Ingram JR, Knockenhauer KE, Markus BM, Mandelbaum J, Ramek A, Shan Y, Shaw DE, Schwartz TU, Ploegh HL, Lourido S | Proceedings of the National Academy of Sciences of the United States of America | 26305940 | Proc Natl Acad Sci U S A | 2015 Sep 8 |
| One-step enzymatic modification of the cell surface redirects cellular cytotoxicity and parasite tropism. | Swee LK, Lourido S, Bell GW, Ingram JR, Ploegh HL | ACS chemical biology | 25360987 | ACS Chem Biol | 2015 Feb 20 |
| Efficient genome engineering of Toxoplasma gondii using CRISPR/Cas9. | Sidik SM, Hackett CG, Tran F, Westwood NJ, Lourido S | PloS one | 24971596 | PLoS One | 2014 |
| Age and sex of surgeons and mortality of older surgical patients: observational study. | Tsugawa Y, Jena AB, Orav EJ, Blumenthal DM, Tsai TC, Mehtsun WT, Jha AK | BMJ (Clinical research ed.) | 29695473 | BMJ | 2018 Apr 25 |
| Identification of Direct Kinase Substrates Using Analogue-Sensitive Alleles. | Rothenberg DA, Gordon EA, White FM, Lourido S | Methods in molecular biology (Clifton, N.J.) | 26584919 | Methods Mol Biol | 2016 |
| Identification of a Master Regulator of Differentiation in Toxoplasma. | Waldman BS, Schwarz D, Wadsworth MH 2nd, Saeij JP, Shalek AK, Lourido S | Cell | 31955846 | Cell | 2020 Jan 23 |
| Toxoplasma gondii. | Lourido S | Trends in parasitology | 31345768 | Trends Parasitol | 2019 Nov |
| In Vivo CRISPR Screen Identifies TgWIP as a Toxoplasma Modulator of Dendritic Cell Migration. | Sangaré LO, Ólafsson EB, Wang Y, Yang N, Julien L, Camejo A, Pesavento P, Sidik SM, Lourido S, Barragan A, Saeij JPJ | Cell host & microbe | 31600500 | Cell Host Microbe | 2019 Oct 9 |
| Using a Genetically Encoded Sensor to Identify Inhibitors of Toxoplasma gondii Ca2+ Signaling. | Sidik SM, Hortua Triana MA, Paul AS, El Bakkouri M, Hackett CG, Tran F, Westwood NJ, Hui R, Zuercher WJ, Duraisingh MT, Moreno SN, Lourido S | The Journal of biological chemistry | 26933036 | J Biol Chem | 2016 Apr 29 |
| A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. | Sidik SM, Huet D, Ganesan SM, Huynh MH, Wang T, Nasamu AS, Thiru P, Saeij JPJ, Carruthers VB, Niles JC, Lourido S | Cell | 27594426 | Cell | 2016 Sep 8 |
| Genetic screens reveal a central role for heme metabolism in artemisinin susceptibility. | Harding CR, Sidik SM, Petrova B, Gnädig NF, Okombo J, Herneisen AL, Ward KE, Markus BM, Boydston EA, Fidock DA, Lourido S | Nature communications | 32968076 | Nat Commun | 2020 Sep 23 |
| The Toxoplasma Dense Granule Proteins GRA17 and GRA23 Mediate the Movement of Small Molecules between the Host and the Parasitophorous Vacuole. | Gold DA, Kaplan AD, Lis A, Bett GC, Rosowski EE, Cirelli KM, Bougdour A, Sidik SM, Beck JR, Lourido S, Egea PF, Bradley PJ, Hakimi MA, Rasmusson RL, Saeij JP | Cell host & microbe | 25974303 | Cell Host Microbe | 2015 May 13 |
| CRISPR-Cas9-based genome-wide screening of Toxoplasma gondii. | Sidik SM, Huet D, Lourido S | Nature protocols | 29323662 | Nat Protoc | 2018 Jan |
| CRISPR interference (CRISPRi) for sequence-specific control of gene expression. | Larson MH, Gilbert LA, Wang X, Lim WA, Weissman JS, Qi LS | Nature protocols | 24136345 | Nat Protoc | 2013 Nov |
| An Introduction to CRISPR Technology for Genome Activation and Repression in Mammalian Cells. | Du D, Qi LS | Cold Spring Harbor protocols | 26729914 | Cold Spring Harb Protoc | 2016 Jan 4 |
| Complex transcriptional modulation with orthogonal and inducible dCas9 regulators. | Gao Y, Xiong X, Wong S, Charles EJ, Lim WA, Qi LS | Nature methods | 27776111 | Nat Methods | 2016 Dec |
| Applications of CRISPR Genome Engineering in Cell Biology. | Wang F, Qi LS | Trends in cell biology | 27599850 | Trends Cell Biol | 2016 Nov |
| Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation. | Gilbert LA, Horlbeck MA, Adamson B, Villalta JE, Chen Y, Whitehead EH, Guimaraes C, Panning B, Ploegh HL, Bassik MC, Qi LS, Kampmann M, Weissman JS | Cell | 25307932 | Cell | 2014 Oct 23 |
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| RIP3 induces apoptosis independent of pronecrotic kinase activity. | Mandal P, Berger SB, Pillay S, Moriwaki K, Huang C, Guo H, Lich JD, Finger J, Kasparcova V, Votta B, Ouellette M, King BW, Wisnoski D, Lakdawala AS, DeMartino MP, Casillas LN, Haile PA, Sehon CA, Marquis RW, Upton J, Daley-Bauer LP, Roback L, Ramia N, Dovey CM, Carette JE, Chan FK, Bertin J, Gough PJ, Mocarski ES, Kaiser WJ | Molecular cell | 25459880 | Mol Cell | 2014 Nov 20 |
| RIPK3 Activates Parallel Pathways of MLKL-Driven Necroptosis and FADD-Mediated Apoptosis to Protect against Influenza A Virus. | Nogusa S, Thapa RJ, Dillon CP, Liedmann S, Oguin TH 3rd, Ingram JP, Rodriguez DA, Kosoff R, Sharma S, Sturm O, Verbist K, Gough PJ, Bertin J, Hartmann BM, Sealfon SC, Kaiser WJ, Mocarski ES, López CB, Thomas PG, Oberst A, Green DR, Balachandran S | Cell host & microbe | 27321907 | Cell Host Microbe | 2016 Jul 13 |
| Caspase-8 scaffolding function and MLKL regulate NLRP3 inflammasome activation downstream of TLR3. | Kang S, Fernandes-Alnemri T, Rogers C, Mayes L, Wang Y, Dillon C, Roback L, Kaiser W, Oberst A, Sagara J, Fitzgerald KA, Green DR, Zhang J, Mocarski ES, Alnemri ES | Nature communications | 26104484 | Nat Commun | 2015 Jun 24 |
| T cell-intrinsic ASC critically promotes T(H)17-mediated experimental autoimmune encephalomyelitis. | Martin BN, Wang C, Zhang CJ, Kang Z, Gulen MF, Zepp JA, Zhao J, Bian G, Do JS, Min B, Pavicic PG Jr, El-Sanadi C, Fox PL, Akitsu A, Iwakura Y, Sarkar A, Wewers MD, Kaiser WJ, Mocarski ES, Rothenberg ME, Hise AG, Dubyak GR, Ransohoff RM, Li X | Nature immunology | 26998763 | Nat Immunol | 2016 May |
| Is SIRT2 required for necroptosis? | Newton K, Hildebrand JM, Shen Z, Rodriguez D, Alvarez-Diaz S, Petersen S, Shah S, Dugger DL, Huang C, Auwerx J, Vandenabeele P, Green DR, Ashkenazi A, Dixit VM, Kaiser WJ, Strasser A, Degterev A, Silke J | Nature | 24572428 | Nature | 2014 Feb 27 |
| Toll-like receptor 3-mediated necrosis via TRIF, RIP3, and MLKL. | Kaiser WJ, Sridharan H, Huang C, Mandal P, Upton JW, Gough PJ, Sehon CA, Marquis RW, Bertin J, Mocarski ES | The Journal of biological chemistry | 24019532 | J Biol Chem | 2013 Oct 25 |
| Necroptosis: The Trojan horse in cell autonomous antiviral host defense. | Mocarski ES, Guo H, Kaiser WJ | Virology | 25819165 | Virology | 2015 May |
| Murine cytomegalovirus IE3-dependent transcription is required for DAI/ZBP1-mediated necroptosis. | Sridharan H, Ragan KB, Guo H, Gilley RP, Landsteiner VJ, Kaiser WJ, Upton JW | EMBO reports | 28607035 | EMBO Rep | 2017 Aug |
| ESCRTing Necroptosis. | Guo H, Kaiser WJ | Cell | 28388403 | Cell | 2017 Apr 6 |
| Cutting Edge: RIP1 kinase activity is dispensable for normal development but is a key regulator of inflammation in SHARPIN-deficient mice. | Berger SB, Kasparcova V, Hoffman S, Swift B, Dare L, Schaeffer M, Capriotti C, Cook M, Finger J, Hughes-Earle A, Harris PA, Kaiser WJ, Mocarski ES, Bertin J, Gough PJ | Journal of immunology (Baltimore, Md. : 1950) | 24821972 | J Immunol | 2014 Jun 15 |
| Herpes simplex virus suppresses necroptosis in human cells. | Guo H, Omoto S, Harris PA, Finger JN, Bertin J, Gough PJ, Kaiser WJ, Mocarski ES | Cell host & microbe | 25674983 | Cell Host Microbe | 2015 Feb 11 |
| Apaf1 apoptotic function critically limits Sonic hedgehog signaling during craniofacial development. | Long AB, Kaiser WJ, Mocarski ES, Caspary T | Cell death and differentiation | 23892366 | Cell Death Differ | 2013 Nov |
| True grit: programmed necrosis in antiviral host defense, inflammation, and immunogenicity. | Mocarski ES, Kaiser WJ, Livingston-Rosanoff D, Upton JW, Daley-Bauer LP | Journal of immunology (Baltimore, Md. : 1950) | 24563506 | J Immunol | 2014 Mar 1 |
| Suppression of RIP3-dependent necroptosis by human cytomegalovirus. | Omoto S, Guo H, Talekar GR, Roback L, Kaiser WJ, Mocarski ES | The Journal of biological chemistry | 25778401 | J Biol Chem | 2015 May 1 |
| Proapoptotic chemotherapeutic drugs induce noncanonical processing and release of IL-1β via caspase-8 in dendritic cells. | Antonopoulos C, El Sanadi C, Kaiser WJ, Mocarski ES, Dubyak GR | Journal of immunology (Baltimore, Md. : 1950) | 24078693 | J Immunol | 2013 Nov 1 |
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| Molecular crosstalk between apoptosis, necroptosis, and survival signaling. | Vanden Berghe T, Kaiser WJ, Bertrand MJ, Vandenabeele P | Molecular & cellular oncology | 27308513 | Mol Cell Oncol | 2015 Oct-Dec |
| Species-independent contribution of ZBP1/DAI/DLM-1-triggered necroptosis in host defense against HSV1. | Guo H, Gilley RP, Fisher A, Lane R, Landsteiner VJ, Ragan KB, Dovey CM, Carette JE, Upton JW, Mocarski ES, Kaiser WJ | Cell death & disease | 30050136 | Cell Death Dis | 2018 Jul 26 |
| RIP1 suppresses innate immune necrotic as well as apoptotic cell death during mammalian parturition. | Kaiser WJ, Daley-Bauer LP, Thapa RJ, Mandal P, Berger SB, Huang C, Sundararajan A, Guo H, Roback L, Speck SH, Bertin J, Gough PJ, Balachandran S, Mocarski ES | Proceedings of the National Academy of Sciences of the United States of America | 24821786 | Proc Natl Acad Sci U S A | 2014 May 27 |
| Manipulation of apoptosis and necroptosis signaling by herpesviruses. | Guo H, Kaiser WJ, Mocarski ES | Medical microbiology and immunology | 25828583 | Med Microbiol Immunol | 2015 Jun |
| Caspase-8 modulates dectin-1 and complement receptor 3-driven IL-1β production in response to β-glucans and the fungal pathogen, Candida albicans. | Ganesan S, Rathinam VAK, Bossaller L, Army K, Kaiser WJ, Mocarski ES, Dillon CP, Green DR, Mayadas TN, Levitz SM, Hise AG, Silverman N, Fitzgerald KA | Journal of immunology (Baltimore, Md. : 1950) | 25063877 | J Immunol | 2014 Sep 1 |
| Caspase-8 as an Effector and Regulator of NLRP3 Inflammasome Signaling. | Antonopoulos C, Russo HM, El Sanadi C, Martin BN, Li X, Kaiser WJ, Mocarski ES, Dubyak GR | The Journal of biological chemistry | 26100631 | J Biol Chem | 2015 Aug 14 |
| Controlling organization and forces in active matter through optically defined boundaries. | Ross TD, Lee HJ, Qu Z, Banks RA, Phillips R, Thomson M | Nature | 31391558 | Nature | 2019 Aug |
| A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity. | Cerchiari AE, Garbe JC, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomson M, Gartner ZJ | Proceedings of the National Academy of Sciences of the United States of America | 25633040 | Proc Natl Acad Sci U S A | 2015 Feb 17 |
| Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors. | Morsut L, Roybal KT, Xiong X, Gordley RM, Coyle SM, Thomson M, Lim WA | Cell | 26830878 | Cell | 2016 Feb 11 |
| Transient Thresholding: A Mechanism Enabling Noncooperative Transcriptional Circuitry to Form a Switch. | Aull KH, Tanner EJ, Thomson M, Weinberger LS | Biophysical journal | 28591615 | Biophys J | 2017 Jun 6 |
| Diffusion as a Ruler: Modeling Kinesin Diffusion as a Length Sensor for Intraflagellar Transport. | Hendel NL, Thomson M, Marshall WF | Biophysical journal | 29414712 | Biophys J | 2018 Feb 6 |
| SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells. | Myers SA, Peddada S, Chatterjee N, Friedrich T, Tomoda K, Krings G, Thomas S, Maynard J, Broeker M, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B | eLife | 26949256 | Elife | 2016 Mar 7 |
| In vitro patterning of pluripotent stem cell-derived intestine recapitulates in vivo human development. | Tsai YH, Nattiv R, Dedhia PH, Nagy MS, Chin AM, Thomson M, Klein OD, Spence JR | Development (Cambridge, England) | 27927684 | Development | 2017 Mar 15 |
| Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing. | Heimberg G, Bhatnagar R, El-Samad H, Thomson M | Cell systems | 27135536 | Cell Syst | 2016 Apr 27 |
| Integrated measurement of intracellular proteins and transcripts in single cells. | Xu AM, Liu Q, Takata KL, Jeoung S, Su Y, Antoshechkin I, Chen S, Thomson M, Heath JR | Lab on a chip | 30178802 | Lab Chip | 2018 Oct 23 |
| Transcriptome-wide Analysis Reveals Hallmarks of Human Intestine Development and Maturation In Vitro and In Vivo. | Finkbeiner SR, Hill DR, Altheim CH, Dedhia PH, Taylor MJ, Tsai YH, Chin AM, Mahe MM, Watson CL, Freeman JJ, Nattiv R, Thomson M, Klein OD, Shroyer NF, Helmrath MA, Teitelbaum DH, Dempsey PJ, Spence JR | Stem cell reports | 26050928 | Stem Cell Reports | 2015 Jun 3 |
| Environmental statistics and optimal regulation. | Sivak DA, Thomson M | PLoS computational biology | 25254493 | PLoS Comput Biol | 2014 Sep |
| Adult Neurogenesis Is Sustained by Symmetric Self-Renewal and Differentiation. | Obernier K, Cebrian-Silla A, Thomson M, Parraguez JI, Anderson R, Guinto C, Rodas Rodriguez J, Garcia-Verdugo JM, Alvarez-Buylla A | Cell stem cell | 29395056 | Cell Stem Cell | 2018 Feb 1 |
| D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response. | Jiang J, Chen S, Tsou T, McGinnis CS, Khazaei T, Zhu Q, Park JH, Strazhnik IM, Vielmetter J, Gong Y, Hanna J, Chow ED, Sivak DA, Gartner ZJ, Thomson M | bioRxiv : the preprint server for biology | 37131803 | bioRxiv | 2024 Jun 4 |
| Spin glasses, error correcting codes, and synchronization of human stem cell organoids. | Thomson M | Cell | 36736298 | Cell | 2023 Feb 2 |
| The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome. | Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, Guttman M | Science (New York, N.Y.) | 23828888 | Science | 2013 Aug 16 |
| RAP-MS: A Method to Identify Proteins that Interact Directly with a Specific RNA Molecule in Cells. | McHugh CA, Guttman M | Methods in molecular biology (Clifton, N.J.) | 29130217 | Methods Mol Biol | 2018 |
| Local regulation of gene expression by lncRNA promoters, transcription and splicing. | Engreitz JM, Haines JE, Perez EM, Munson G, Chen J, Kane M, McDonel PE, Guttman M, Lander ES | Nature | 27783602 | Nature | 2016 Nov 17 |
| m(6)A RNA methylation promotes XIST-mediated transcriptional repression. | Patil DP, Chen CK, Pickering BF, Chow A, Jackson C, Guttman M, Jaffrey SR | Nature | 27602518 | Nature | 2016 Sep 15 |
| Simultaneous generation of many RNA-seq libraries in a single reaction. | Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J | Nature methods | 25730492 | Nat Methods | 2015 Apr |
| The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. | McHugh CA, Chen CK, Chow A, Surka CF, Tran C, McDonel P, Pandya-Jones A, Blanco M, Burghard C, Moradian A, Sweredoski MJ, Shishkin AA, Su J, Lander ES, Hess S, Plath K, Guttman M | Nature | 25915022 | Nature | 2015 May 14 |
| Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. | Guttman M, Russell P, Ingolia NT, Weissman JS, Lander ES | Cell | 23810193 | Cell | 2013 Jul 3 |
| Long noncoding RNAs: an emerging link between gene regulation and nuclear organization. | Quinodoz S, Guttman M | Trends in cell biology | 25441720 | Trends Cell Biol | 2014 Nov |
| Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP). | Van Nostrand EL, Pratt GA, Shishkin AA, Gelboin-Burkhart C, Fang MY, Sundararaman B, Blue SM, Nguyen TB, Surka C, Elkins K, Stanton R, Rigo F, Guttman M, Yeo GW | Nature methods | 27018577 | Nat Methods | 2016 Jun |
| Microfluidic SlipChip device for multistep multiplexed biochemistry on a nanoliter scale. | Zhukov DV, Khorosheva EM, Khazaei T, Du W, Selck DA, Shishkin AA, Ismagilov RF | Lab on a chip | 31441477 | Lab Chip | 2019 Oct 7 |
| The NORAD lncRNA assembles a topoisomerase complex critical for genome stability. | Munschauer M, Nguyen CT, Sirokman K, Hartigan CR, Hogstrom L, Engreitz JM, Ulirsch JC, Fulco CP, Subramanian V, Chen J, Schenone M, Guttman M, Carr SA, Lander ES | Nature | 30150775 | Nature | 2018 Sep |
| RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites. | Engreitz JM, Sirokman K, McDonel P, Shishkin AA, Surka C, Russell P, Grossman SR, Chow AY, Guttman M, Lander ES | Cell | 25259926 | Cell | 2014 Sep 25 |
| SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding. | Quinodoz SA, Bhat P, Chovanec P, Jachowicz JW, Ollikainen N, Detmar E, Soehalim E, Guttman M | Nature protocols | 35013617 | Nat Protoc | 2022 Jan |
| Imaging the glycosylation state of cell surface glycoproteins by two-photon fluorescence lifetime imaging microscopy. | Belardi B, de la Zerda A, Spiciarich DR, Maund SL, Peehl DM, Bertozzi CR | Angewandte Chemie (International ed. in English) | 24259491 | Angew Chem Int Ed Engl | 2013 Dec 23 |
| Speckle modulation enables high-resolution wide-field human brain tumor margin detection and in vivo murine neuroimaging. | Yecies D, Liba O, SoRelle ED, Dutta R, Yuan E, Vogel H, Grant GA, de la Zerda A | Scientific reports | 31316099 | Sci Rep | 2019 Jul 17 |
| Contrast-enhanced optical coherence tomography with picomolar sensitivity for functional in vivo imaging. | Liba O, SoRelle ED, Sen D, de la Zerda A | Scientific reports | 26987475 | Sci Rep | 2016 Mar 18 |
| High-resolution contrast-enhanced optical coherence tomography in mice retinae. | Sen D, SoRelle ED, Liba O, Dalal R, Paulus YM, Kim TW, Moshfeghi DM, de la Zerda A | Journal of biomedical optics | 27264492 | J Biomed Opt | 2016 Jun 1 |
| A hyperspectral method to assay the microphysiological fates of nanomaterials in histological samples. | SoRelle ED, Liba O, Campbell JL, Dalal R, Zavaleta CL, de la Zerda A | eLife | 27536877 | Elife | 2016 Aug 18 |
| Quantitative contrast-enhanced optical coherence tomography. | Winetraub Y, SoRelle ED, Liba O, de la Zerda A | Applied physics letters | 26869724 | Appl Phys Lett | 2016 Jan 11 |
| Spatiotemporal Tracking of Brain-Tumor-Associated Myeloid Cells in Vivo through Optical Coherence Tomography with Plasmonic Labeling and Speckle Modulation. | SoRelle ED, Yecies DW, Liba O, Bennett FC, Graef CM, Dutta R, Mitra S, Joubert LM, Cheshier S, Grant GA, de la Zerda A | ACS nano | 31259527 | ACS Nano | 2019 Jul 23 |
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| Microglia communication: Parallels between aging and Alzheimer's disease. | Udeochu JC, Shea JM, Villeda SA | Clinical & experimental neuroimmunology | 27840659 | Clin Exp Neuroimmunol | 2016 May |
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| β2-microglobulin is a systemic pro-aging factor that impairs cognitive function and neurogenesis. | Smith LK, He Y, Park JS, Bieri G, Snethlage CE, Lin K, Gontier G, Wabl R, Plambeck KE, Udeochu J, Wheatley EG, Bouchard J, Eggel A, Narasimha R, Grant JL, Luo J, Wyss-Coray T, Villeda SA | Nature medicine | 26147761 | Nat Med | 2015 Aug |
| Aging and brain rejuvenation as systemic events. | Bouchard J, Villeda SA | Journal of neurochemistry | 25327899 | J Neurochem | 2015 Jan |
| Therapeutic potential of systemic brain rejuvenation strategies for neurodegenerative disease. | Horowitz AM, Villeda SA | F1000Research | 28815019 | F1000Res | 2017 |
| Frequency of ED revisits and death among older adults after a fall. | Liu SW, Obermeyer Z, Chang Y, Shankar KN | The American journal of emergency medicine | 25983268 | Am J Emerg Med | 2015 Aug |
| Estimating 1-Year Mortality for High-Risk Primary Care Patients Using the "Surprise" Question. | Lakin JR, Robinson MG, Bernacki RE, Powers BW, Block SD, Cunningham R, Obermeyer Z | JAMA internal medicine | 27695853 | JAMA Intern Med | 2016 Dec 1 |
| Association of Clinical Characteristics With Variation in Emergency Physician Preferences for Patients. | Chang CY, Obermeyer Z | JAMA network open | 31968113 | JAMA Netw Open | 2020 Jan 3 |
| Emergency care in 59 low- and middle-income countries: a systematic review. | Obermeyer Z, Abujaber S, Makar M, Stoll S, Kayden SR, Wallis LA, Reynolds TA, Acute Care Development Consortium | Bulletin of the World Health Organization | 26478615 | Bull World Health Organ | 2015 Aug 1 |
| Individual differences in normal body temperature: longitudinal big data analysis of patient records. | Obermeyer Z, Samra JK, Mullainathan S | BMJ (Clinical research ed.) | 29237616 | BMJ | 2017 Dec 13 |
| Burden of emergency conditions and emergency care usage: new estimates from 40 countries. | Chang CY, Abujaber S, Reynolds TA, Camargo CA Jr, Obermeyer Z | Emergency medicine journal : EMJ | 27334758 | Emerg Med J | 2016 Nov |
| The Emergency Care of Patients With Cancer: Setting the Research Agenda. | Brown J, Grudzen C, Kyriacou DN, Obermeyer Z, Quest T, Rivera D, Stone S, Wright J, Shelburne N | Annals of emergency medicine | 26921969 | Ann Emerg Med | 2016 Dec |
| Development and Application of a Machine Learning Approach to Assess Short-term Mortality Risk Among Patients With Cancer Starting Chemotherapy. | Elfiky AA, Pany MJ, Parikh RB, Obermeyer Z | JAMA network open | 30646043 | JAMA Netw Open | 2018 Jul 6 |
| Research priorities for data collection and management within global acute and emergency care systems. | Reynolds TA, Bisanzo M, Dworkis D, Hansoti B, Obermeyer Z, Seidenberg P, Hauswald M, Mowafi H | Academic emergency medicine : official journal of the Society for Academic Emergency Medicine | 24341579 | Acad Emerg Med | 2013 Dec |
| Lost in Thought - The Limits of the Human Mind and the Future of Medicine. | Obermeyer Z, Lee TH | The New England journal of medicine | 28953443 | N Engl J Med | 2017 Sep 28 |
| Early death after emergency department discharge in patients with psychiatric illness. | Chang BP, Pany MJ, Obermeyer Z | The American journal of emergency medicine | 27884584 | Am J Emerg Med | 2017 May |
| Short-term Mortality Prediction for Elderly Patients Using Medicare Claims Data. | Makar M, Ghassemi M, Cutler DM, Obermeyer Z | International journal of machine learning and computing | 28018571 | Int J Mach Learn Comput | 2015 Jun |
| Predicting the Future - Big Data, Machine Learning, and Clinical Medicine. | Obermeyer Z, Emanuel EJ | The New England journal of medicine | 27682033 | N Engl J Med | 2016 Sep 29 |
| Contributions of risk factors and medical care to cardiovascular mortality trends. | Ezzati M, Obermeyer Z, Tzoulaki I, Mayosi BM, Elliott P, Leon DA | Nature reviews. Cardiology | 26076950 | Nat Rev Cardiol | 2015 Sep |
| Prediction Policy Problems. | Kleinberg J, Ludwig J, Mullainathan S, Obermeyer Z | The American economic review | 27199498 | Am Econ Rev | 2015 May |
| Association between the Medicare hospice benefit and health care utilization and costs for patients with poor-prognosis cancer. | Obermeyer Z, Makar M, Abujaber S, Dominici F, Block S, Cutler DM | JAMA | 25387186 | JAMA | 2014 Nov 12 |
| Regulation of predictive analytics in medicine. | Parikh RB, Obermeyer Z, Navathe AS | Science (New York, N.Y.) | 30792287 | Science | 2019 Feb 22 |
| Predictive modeling of U.S. health care spending in late life. | Einav L, Finkelstein A, Mullainathan S, Obermeyer Z | Science (New York, N.Y.) | 29954980 | Science | 2018 Jun 29 |
| Machine Learning in Health Care. | National Bureau of Economic Research bulletin on aging and health | 30272872 | Natl Bur Econ Res Bull Aging Health | 2018 | |
| Cause-specific risk of hospital admission related to extreme heat in older adults. | Bobb JF, Obermeyer Z, Wang Y, Dominici F | JAMA | 25536257 | JAMA | 2014 Dec 24-31 |
| Emergency Care Use and the Medicare Hospice Benefit for Individuals with Cancer with a Poor Prognosis. | Obermeyer Z, Clarke AC, Makar M, Schuur JD, Cutler DM | Journal of the American Geriatrics Society | 26805592 | J Am Geriatr Soc | 2016 Feb |
| Short-term Outcomes for Medicare Beneficiaries After Low-acuity Visits to Emergency Departments and Clinics. | Niedzwiecki M, Baicker K, Wilson M, Cutler DM, Obermeyer Z | Medical care | 27078822 | Med Care | 2016 May |
| Does Machine Learning Automate Moral Hazard and Error? | Mullainathan S, Obermeyer Z | The American economic review | 28781376 | Am Econ Rev | 2017 May |
| Acute myocardial infarction hospital admissions and deaths in England: a national follow-back and follow-forward record-linkage study. | Asaria P, Elliott P, Douglass M, Obermeyer Z, Soljak M, Majeed A, Ezzati M | The Lancet. Public health | 29253451 | Lancet Public Health | 2017 Apr |
| Making recording and analysis of chief complaint a priority for global emergency care research in low-income countries. | Mowafi H, Dworkis D, Bisanzo M, Hansoti B, Seidenberg P, Obermeyer Z, Hauswald M, Reynolds TA | Academic emergency medicine : official journal of the Society for Academic Emergency Medicine | 24283813 | Acad Emerg Med | 2013 Dec |
| Cost savings associated with expanded hospice use in Medicare. | Powers BW, Makar M, Jain SH, Cutler DM, Obermeyer Z | Journal of palliative medicine | 25806563 | J Palliat Med | 2015 May |
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| Intragenic antagonistic roles of protein and circRNA in tumorigenesis. | Guarnerio J, Zhang Y, Cheloni G, Panella R, Mae Katon J, Simpson M, Matsumoto A, Papa A, Loretelli C, Petri A, Kauppinen S, Garbutt C, Nielsen GP, Deshpande V, Castillo-Martin M, Cordon-Cardo C, Dimitrios S, Clohessy JG, Batish M, Pandolfi PP | Cell research | 31209250 | Cell Res | 2019 Aug |
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| TSLP elicits IL-33-independent innate lymphoid cell responses to promote skin inflammation. | Kim BS, Siracusa MC, Saenz SA, Noti M, Monticelli LA, Sonnenberg GF, Hepworth MR, Van Voorhees AS, Comeau MR, Artis D | Science translational medicine | 23363980 | Sci Transl Med | 2013 Jan 30 |
| Lymphoid-Tissue-Resident Commensal Bacteria Promote Members of the IL-10 Cytokine Family to Establish Mutualism. | Fung TC, Bessman NJ, Hepworth MR, Kumar N, Shibata N, Kobuley D, Wang K, Ziegler CGK, Goc J, Shima T, Umesaki Y, Sartor RB, Sullivan KV, Lawley TD, Kunisawa J, Kiyono H, Sonnenberg GF | Immunity | 26982365 | Immunity | 2016 Mar 15 |
| Linking microcircuit dysfunction to cognitive impairment: effects of disinhibition associated with schizophrenia in a cortical working memory model. | Murray JD, Anticevic A, Gancsos M, Ichinose M, Corlett PR, Krystal JH, Wang XJ | Cerebral cortex (New York, N.Y. : 1991) | 23203979 | Cereb Cortex | 2014 Apr |
| Global resting-state functional magnetic resonance imaging analysis identifies frontal cortex, striatal, and cerebellar dysconnectivity in obsessive-compulsive disorder. | Anticevic A, Hu S, Zhang S, Savic A, Billingslea E, Wasylink S, Repovs G, Cole MW, Bednarski S, Krystal JH, Bloch MH, Li CS, Pittenger C | Biological psychiatry | 24314349 | Biol Psychiatry | 2014 Apr 15 |
| Ventral anterior cingulate connectivity distinguished nonpsychotic bipolar illness from psychotic bipolar disorder and schizophrenia. | Anticevic A, Savic A, Repovs G, Yang G, McKay DR, Sprooten E, Knowles EE, Krystal JH, Pearlson GD, Glahn DC | Schizophrenia bulletin | 24782562 | Schizophr Bull | 2015 Jan |
| Understanding the role of thalamic circuits in schizophrenia neuropathology. | Anticevic A | Schizophrenia research | 27939828 | Schizophr Res | 2017 Feb |
| Rebalancing Altered Computations: Considering the Role of Neural Excitation and Inhibition Balance Across the Psychiatric Spectrum. | Anticevic A, Murray JD | Biological psychiatry | 28434614 | Biol Psychiatry | 2017 May 15 |
| Impaired Tuning of Neural Ensembles and the Pathophysiology of Schizophrenia: A Translational and Computational Neuroscience Perspective. | Krystal JH, Anticevic A, Yang GJ, Dragoi G, Driesen NR, Wang XJ, Murray JD | Biological psychiatry | 28434616 | Biol Psychiatry | 2017 May 15 |
| Ketamine induces multiple individually distinct whole-brain functional connectivity signatures. | Moujaes F, Ji JL, Rahmati M, Burt JB, Schleifer C, Adkinson BD, Savic A, Santamauro N, Tamayo Z, Diehl C, Kolobaric A, Flynn M, Rieser N, Fonteneau C, Camarro T, Xu J, Cho Y, Repovs G, Fineberg SK, Morgan PT, Seifritz E, Vollenweider FX, Krystal JH, Murray JD, Preller KH, Anticevic A | eLife | 38629811 | Elife | 2024 Apr 17 |
| Robust hierarchically organized whole-brain patterns of dysconnectivity in schizophrenia spectrum disorders observed after personalized intrinsic network topography. | Dickie EW, Shahab S, Hawco C, Miranda D, Herman G, Argyelan M, Ji JL, Jeyachandra J, Anticevic A, Malhotra AK, Voineskos AN | Human brain mapping | 37605827 | Hum Brain Mapp | 2023 Oct 15 |
| Multi-task connectivity reveals flexible hubs for adaptive task control. | Cole MW, Reynolds JR, Power JD, Repovs G, Anticevic A, Braver TS | Nature neuroscience | 23892552 | Nat Neurosci | 2013 Sep |
| Characterizing thalamo-cortical disturbances in schizophrenia and bipolar illness. | Anticevic A, Cole MW, Repovs G, Murray JD, Brumbaugh MS, Winkler AM, Savic A, Krystal JH, Pearlson GD, Glahn DC | Cerebral cortex (New York, N.Y. : 1991) | 23825317 | Cereb Cortex | 2014 Dec |
| The impact of NMDA receptor blockade on human working memory-related prefrontal function and connectivity. | Driesen NR, McCarthy G, Bhagwagar Z, Bloch MH, Calhoun VD, D'Souza DC, Gueorguieva R, He G, Leung HC, Ramani R, Anticevic A, Suckow RF, Morgan PT, Krystal JH | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 23856634 | Neuropsychopharmacology | 2013 Dec |
| Altered global brain signal in schizophrenia. | Yang GJ, Murray JD, Repovs G, Cole MW, Savic A, Glasser MF, Pittenger C, Krystal JH, Wang XJ, Pearlson GD, Glahn DC, Anticevic A | Proceedings of the National Academy of Sciences of the United States of America | 24799682 | Proc Natl Acad Sci U S A | 2014 May 20 |
| Bridging Levels of Understanding in Schizophrenia Through Computational Modeling. | Anticevic A, Murray JD, Barch DM | Clinical psychological science : a journal of the Association for Psychological Science | 25960938 | Clin Psychol Sci | 2015 May |
| N-methyl-D-aspartate receptor antagonist effects on prefrontal cortical connectivity better model early than chronic schizophrenia. | Anticevic A, Corlett PR, Cole MW, Savic A, Gancsos M, Tang Y, Repovs G, Murray JD, Driesen NR, Morgan PT, Xu K, Wang F, Krystal JH | Biological psychiatry | 25281999 | Biol Psychiatry | 2015 Mar 15 |
| Effects of reward on spatial working memory in schizophrenia. | Cho YT, Lam NH, Starc M, Santamauro N, Savic A, Diehl CK, Schleifer CH, Moujaes F, Srihari VH, Repovs G, Murray JD, Anticevic A | Journal of abnormal psychology | 30335439 | J Abnorm Psychol | 2018 Oct |
| Toward understanding thalamocortical dysfunction in schizophrenia through computational models of neural circuit dynamics. | Murray JD, Anticevic A | Schizophrenia research | 27784534 | Schizophr Res | 2017 Feb |
| Amygdala volume is reduced in early course schizophrenia. | Rich AM, Cho YT, Tang Y, Savic A, Krystal JH, Wang F, Xu K, Anticevic A | Psychiatry research. Neuroimaging | 27035063 | Psychiatry Res Neuroimaging | 2016 Apr 30 |
| Reward and loss incentives improve spatial working memory by shaping trial-by-trial posterior frontoparietal signals. | Cho YT, Moujaes F, Schleifer CH, Starc M, Ji JL, Santamauro N, Adkinson B, Kolobaric A, Flynn M, Krystal JH, Murray JD, Repovs G, Anticevic A | NeuroImage | 35346841 | Neuroimage | 2022 Jul 1 |
| Electrophysiological Studies of Reception of Facial Communication in Autism Spectrum Disorder and Schizophrenia. | Levy EJ, Foss-Feig J, Isenstein EL, Srihari V, Anticevic A, Naples AJ, McPartland JC | Review journal of autism and developmental disorders | 36568688 | Rev J Autism Dev Disord | 2022 Dec |
| The frontoparietal control system: a central role in mental health. | Cole MW, Repovš G, Anticevic A | The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry | 24622818 | Neuroscientist | 2014 Dec |
| Amygdala connectivity differs among chronic, early course, and individuals at risk for developing schizophrenia. | Anticevic A, Tang Y, Cho YT, Repovs G, Cole MW, Savic A, Wang F, Krystal JH, Xu K | Schizophrenia bulletin | 24366718 | Schizophr Bull | 2014 Sep |
| Connectivity, pharmacology, and computation: toward a mechanistic understanding of neural system dysfunction in schizophrenia. | Anticevic A, Cole MW, Repovs G, Savic A, Driesen NR, Yang G, Cho YT, Murray JD, Glahn DC, Wang XJ, Krystal JH | Frontiers in psychiatry | 24399974 | Front Psychiatry | 2013 Dec 24 |
| Association of Thalamic Dysconnectivity and Conversion to Psychosis in Youth and Young Adults at Elevated Clinical Risk. | Anticevic A, Haut K, Murray JD, Repovs G, Yang GJ, Diehl C, McEwen SC, Bearden CE, Addington J, Goodyear B, Cadenhead KS, Mirzakhanian H, Cornblatt BA, Olvet D, Mathalon DH, McGlashan TH, Perkins DO, Belger A, Seidman LJ, Tsuang MT, van Erp TG, Walker EF, Hamann S, Woods SW, Qiu M, Cannon TD | JAMA psychiatry | 26267151 | JAMA Psychiatry | 2015 Sep |
| Re-conceptualizing ASD Within a Dimensional Framework: Positive, Negative, and Cognitive Feature Clusters. | Foss-Feig JH, McPartland JC, Anticevic A, Wolf J | Journal of autism and developmental disorders | 26267330 | J Autism Dev Disord | 2016 Jan |
| Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. | Schleifer C, Lin A, Kushan L, Ji JL, Yang G, Bearden CE, Anticevic A | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30478034 | J Neurosci | 2019 Feb 13 |
| Changes in global and thalamic brain connectivity in LSD-induced altered states of consciousness are attributable to the 5-HT2A receptor. | Preller KH, Burt JB, Ji JL, Schleifer CH, Adkinson BD, Stämpfli P, Seifritz E, Repovs G, Krystal JH, Murray JD, Vollenweider FX, Anticevic A | eLife | 30355445 | Elife | 2018 Oct 25 |
| Transcriptomics-informed large-scale cortical model captures topography of pharmacological neuroimaging effects of LSD. | Burt JB, Preller KH, Demirtas M, Ji JL, Krystal JH, Vollenweider FX, Anticevic A, Murray JD | eLife | 34313217 | Elife | 2021 Jul 27 |
| Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks. | Purg Suljič N, Kraljič A, Rahmati M, Cho YT, Slana Ozimič A, Murray JD, Anticevic A, Repovš G | Cerebral cortex (New York, N.Y. : 1991) | 39214852 | Cereb Cortex | 2024 Aug 1 |
| Schizophrenia is associated with a pattern of spatial working memory deficits consistent with cortical disinhibition. | Starc M, Murray JD, Santamauro N, Savic A, Diehl C, Cho YT, Srihari V, Morgan PT, Krystal JH, Wang XJ, Repovs G, Anticevic A | Schizophrenia research | 27745755 | Schizophr Res | 2017 Mar |
| Mapping the human brain's cortical-subcortical functional network organization. | Ji JL, Spronk M, Kulkarni K, Repovš G, Anticevic A, Cole MW | NeuroImage | 30291974 | Neuroimage | 2019 Jan 15 |
| Schizophrenia Exhibits Bi-directional Brain-Wide Alterations in Cortico-Striato-Cerebellar Circuits. | Ji JL, Diehl C, Schleifer C, Tamminga CA, Keshavan MS, Sweeney JA, Clementz BA, Hill SK, Pearlson G, Yang G, Creatura G, Krystal JH, Repovs G, Murray J, Winkler A, Anticevic A | Cerebral cortex (New York, N.Y. : 1991) | 31157363 | Cereb Cortex | 2019 Dec 17 |
| Developmentally divergent sexual dimorphism in the cortico-striatal-thalamic-cortical psychosis risk pathway. | Jacobs GR, Ameis SH, Ji JL, Viviano JD, Dickie EW, Wheeler AL, Stojanovski S, Anticevic A, Voineskos AN | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 31060043 | Neuropsychopharmacology | 2019 Aug |
| Cognition-emotion dysinteraction in schizophrenia. | Anticevic A, Corlett PR | Frontiers in psychology | 23091464 | Front Psychol | 2012 |
| The role of default network deactivation in cognition and disease. | Anticevic A, Cole MW, Murray JD, Corlett PR, Wang XJ, Krystal JH | Trends in cognitive sciences | 23142417 | Trends Cogn Sci | 2012 Dec |
| Relationship of resting brain hyperconnectivity and schizophrenia-like symptoms produced by the NMDA receptor antagonist ketamine in humans. | Driesen NR, McCarthy G, Bhagwagar Z, Bloch M, Calhoun V, D'Souza DC, Gueorguieva R, He G, Ramachandran R, Suckow RF, Anticevic A, Morgan PT, Krystal JH | Molecular psychiatry | 23337947 | Mol Psychiatry | 2013 Nov |
| Global connectivity of prefrontal cortex predicts cognitive control and intelligence. | Cole MW, Yarkoni T, Repovs G, Anticevic A, Braver TS | The Journal of neuroscience : the official journal of the Society for Neuroscience | 22745498 | J Neurosci | 2012 Jun 27 |
| Searching for Cross-Diagnostic Convergence: Neural Mechanisms Governing Excitation and Inhibition Balance in Schizophrenia and Autism Spectrum Disorders. | Foss-Feig JH, Adkinson BD, Ji JL, Yang G, Srihari VH, McPartland JC, Krystal JH, Murray JD, Anticevic A | Biological psychiatry | 28434615 | Biol Psychiatry | 2017 May 15 |
| Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks. | Purg Suljic N, Kraljic A, Rahmati M, Cho YT, Slana Ozimic A, Murray JD, Anticevic A, Repovs G | bioRxiv : the preprint server for biology | 37662268 | bioRxiv | 2024 Jul 31 |
| Effects of Altered Excitation-Inhibition Balance on Decision Making in a Cortical Circuit Model. | Lam NH, Borduqui T, Hallak J, Roque A, Anticevic A, Krystal JH, Wang XJ, Murray JD | The Journal of neuroscience : the official journal of the Society for Neuroscience | 34887320 | J Neurosci | 2022 Feb 9 |
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| Flexible backbone sampling methods to model and design protein alternative conformations. | Ollikainen N, Smith CA, Fraser JS, Kortemme T | Methods in enzymology | 23422426 | Methods Enzymol | 2013 |
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| High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. | Thomaston JL, Alfonso-Prieto M, Woldeyes RA, Fraser JS, Klein ML, Fiorin G, DeGrado WF | Proceedings of the National Academy of Sciences of the United States of America | 26578770 | Proc Natl Acad Sci U S A | 2015 Nov 17 |
| Bringing diffuse X-ray scattering into focus. | Wall ME, Wolff AM, Fraser JS | Current opinion in structural biology | 29455056 | Curr Opin Struct Biol | 2018 Jun |
| EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. | Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS | Nature methods | 26280328 | Nat Methods | 2015 Oct |
| CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. | Cimermancic P, Weinkam P, Rettenmaier TJ, Bichmann L, Keedy DA, Woldeyes RA, Schneidman-Duhovny D, Demerdash ON, Mitchell JC, Wells JA, Fraser JS, Sali A | Journal of molecular biology | 26854760 | J Mol Biol | 2016 Feb 22 |
| Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR. | Fenwick RB, van den Bedem H, Fraser JS, Wright PE | Proceedings of the National Academy of Sciences of the United States of America | 24474795 | Proc Natl Acad Sci U S A | 2014 Jan 28 |
| Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR. | Keedy DA, van den Bedem H, Sivak DA, Petsko GA, Ringe D, Wilson MA, Fraser JS | Structure (London, England : 1993) | 24882744 | Structure | 2014 Jun 10 |
| Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine. | Williams BB, Van Benschoten AH, Cimermancic P, Donia MS, Zimmermann M, Taketani M, Ishihara A, Kashyap PC, Fraser JS, Fischbach MA | Cell host & microbe | 25263219 | Cell Host Microbe | 2014 Oct 8 |
| From systems to structure: bridging networks and mechanism. | Fraser JS, Gross JD, Krogan NJ | Molecular cell | 23352243 | Mol Cell | 2013 Jan 24 |
| Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. | Fischer M, Coleman RG, Fraser JS, Shoichet BK | Nature chemistry | 24950326 | Nat Chem | 2014 Jul |
| Genetic interaction mapping informs integrative structure determination of protein complexes. | Braberg H, Echeverria I, Bohn S, Cimermancic P, Shiver A, Alexander R, Xu J, Shales M, Dronamraju R, Jiang S, Dwivedi G, Bogdanoff D, Chaung KK, Hüttenhain R, Wang S, Mavor D, Pellarin R, Schneidman D, Bader JS, Fraser JS, Morris J, Haber JE, Strahl BD, Gross CA, Dai J, Boeke JD, Sali A, Krogan NJ | Science (New York, N.Y.) | 33303586 | Science | 2020 Dec 11 |
| One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. | Fischer M, Shoichet BK, Fraser JS | Chembiochem : a European journal of chemical biology | 26032594 | Chembiochem | 2015 Jul 27 |
| XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction. | Thomaston JL, Woldeyes RA, Nakane T, Yamashita A, Tanaka T, Koiwai K, Brewster AS, Barad BA, Chen Y, Lemmin T, Uervirojnangkoorn M, Arima T, Kobayashi J, Masuda T, Suzuki M, Sugahara M, Sauter NK, Tanaka R, Nureki O, Tono K, Joti Y, Nango E, Iwata S, Yumoto F, Fraser JS, DeGrado WF | Proceedings of the National Academy of Sciences of the United States of America | 28835537 | Proc Natl Acad Sci U S A | 2017 Dec 19 |
| Automated identification of functional dynamic contact networks from X-ray crystallography. | van den Bedem H, Bhabha G, Yang K, Wright PE, Fraser JS | Nature methods | 23913260 | Nat Methods | 2013 Sep |
| Diffuse X-ray scattering to model protein motions. | Wall ME, Adams PD, Fraser JS, Sauter NK | Structure (London, England : 1993) | 24507780 | Structure | 2014 Feb 4 |
| Keep on moving: discovering and perturbing the conformational dynamics of enzymes. | Bhabha G, Biel JT, Fraser JS | Accounts of chemical research | 25539415 | Acc Chem Res | 2015 Feb 17 |
| Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder. | Dellus-Gur E, Elias M, Caselli E, Prati F, Salverda ML, de Visser JA, Fraser JS, Tawfik DS | Journal of molecular biology | 26004540 | J Mol Biol | 2015 Jul 17 |
| Conformational variation of proteins at room temperature is not dominated by radiation damage. | Russi S, González A, Kenner LR, Keedy DA, Fraser JS, van den Bedem H | Journal of synchrotron radiation | 28009548 | J Synchrotron Radiat | 2017 Jan 1 |
| Measuring and modeling diffuse scattering in protein X-ray crystallography. | Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME | Proceedings of the National Academy of Sciences of the United States of America | 27035972 | Proc Natl Acad Sci U S A | 2016 Apr 12 |
| Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting. | Mavor D, Barlow K, Thompson S, Barad BA, Bonny AR, Cario CL, Gaskins G, Liu Z, Deming L, Axen SD, Caceres E, Chen W, Cuesta A, Gate RE, Green EM, Hulce KR, Ji W, Kenner LR, Mensa B, Morinishi LS, Moss SM, Mravic M, Muir RK, Niekamp S, Nnadi CI, Palovcak E, Poss EM, Ross TD, Salcedo EC, See SK, Subramaniam M, Wong AW, Li J, Thorn KS, Conchúir SÓ, Roscoe BP, Chow ED, DeRisi JL, Kortemme T, Bolon DN, Fraser JS | eLife | 27111525 | Elife | 2016 Apr 25 |
| Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. | Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, Brunger AT, Soltis SM, Lemke H, Gonzalez A, Sauter NK, Cohen AE, van den Bedem H, Thorne RE, Fraser JS | eLife | 26422513 | Elife | 2015 Sep 30 |
| Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering. | Wall ME, Van Benschoten AH, Sauter NK, Adams PD, Fraser JS, Terwilliger TC | Proceedings of the National Academy of Sciences of the United States of America | 25453071 | Proc Natl Acad Sci U S A | 2014 Dec 16 |
| Integrative, dynamic structural biology at atomic resolution--it's about time. | van den Bedem H, Fraser JS | Nature methods | 25825836 | Nat Methods | 2015 Apr |
| Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance. | Mavor D, Barlow KA, Asarnow D, Birman Y, Britain D, Chen W, Green EM, Kenner LR, Mensa B, Morinishi LS, Nelson CA, Poss EM, Suresh P, Tian R, Arhar T, Ary BE, Bauer DP, Bergman ID, Brunetti RM, Chio CM, Dai SA, Dickinson MS, Elledge SK, Helsell CVM, Hendel NL, Kang E, Kern N, Khoroshkin MS, Kirkemo LL, Lewis GR, Lou K, Marin WM, Maxwell AM, McTigue PF, Myers-Turnbull D, Nagy TL, Natale AM, Oltion K, Pourmal S, Reder GK, Rettko NJ, Rohweder PJ, Schwarz DMC, Tan SK, Thomas PV, Tibble RW, Town JP, Tsai MK, Ugur FS, Wassarman DR, Wolff AM, Wu TS, Bogdanoff D, Li J, Thorn KS, O'Conchúir S, Swaney DL, Chow ED, Madhani HD, Redding S, Bolon DN, Kortemme T, DeRisi JL, Kampmann M, Fraser JS | Biology open | 30037883 | Biol Open | 2018 Jul 23 |
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| Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. | Van Benschoten AH, Afonine PV, Terwilliger TC, Wall ME, Jackson CJ, Sauter NK, Adams PD, Urzhumtsev A, Fraser JS | Acta crystallographica. Section D, Biological crystallography | 26249347 | Acta Crystallogr D Biol Crystallogr | 2015 Aug |
| From deep TLS validation to ensembles of atomic models built from elemental motions. | Urzhumtsev A, Afonine PV, Van Benschoten AH, Fraser JS, Adams PD | Acta crystallographica. Section D, Biological crystallography | 26249348 | Acta Crystallogr D Biol Crystallogr | 2015 Aug |
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| Systematic functional prioritization of protein posttranslational modifications. | Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ | Cell | 22817900 | Cell | 2012 Jul 20 |
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