NIH Director's Early Independence Award
NIH Director's Early Independence Award
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date | PubMedLink |
|---|---|---|---|---|---|---|
| Reliability and Validity of Transcranial Magnetic Stimulation-Electroencephalography Biomarkers. | Parmigiani S, Ross JM, Cline CC, Minasi CB, Gogulski J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36894435 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36894435 |
| Neural effects of TMS trains on the human prefrontal cortex. | Ross JM, Cline CC, Sarkar M, Truong J, Keller CJ | bioRxiv : the preprint server for biology | 36778457 | bioRxiv | 2023 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/36778457 |
| Theta-burst direct electrical stimulation remodels human brain networks. | Huang Y, Zelmann R, Hadar P, Dezha-Peralta J, Richardson RM, Williams ZM, Cash SS, Keller CJ, Paulk AC | Nature communications | 39143083 | Nat Commun | 2024 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/39143083 |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | Cerebral cortex (New York, N.Y. : 1991) | 38596882 | Cereb Cortex | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38596882 |
| Real-time optimization to enhance noninvasive cortical excitability assessment in the human dorsolateral prefrontal cortex. | Parmigiani S, Cline CC, Sarkar M, Forman L, Truong J, Ross JM, Gogulski J, Keller CJ | bioRxiv : the preprint server for biology | 38853941 | bioRxiv | 2024 May 31 | https://www.ncbi.nlm.nih.gov/pubmed/38853941 |
| Direct cortical stimulation induces short-term plasticity of neural oscillations in humans. | Munot S, Kim N, Huang Y, Keller CJ | bioRxiv : the preprint server for biology | 38014071 | bioRxiv | 2023 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/38014071 |
| Dorsolateral prefrontal cortex TMS evokes responses in the subgenual anterior cingulate cortex: Evidence from human intracranial EEG. | Trapp NT, Liu X, Li Z, Bruss J, Keller CJ, Boes AD, Jiang J | bioRxiv : the preprint server for biology | 39763715 | bioRxiv | 2024 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/39763715 |
| Personalized Repetitive Transcranial Magnetic Stimulation for Depression. | Gogulski J, Ross JM, Talbot A, Cline CC, Donati FL, Munot S, Kim N, Gibbs C, Bastin N, Yang J, Minasi C, Sarkar M, Truong J, Keller CJ | Biological psychiatry. Cognitive neuroscience and neuroimaging | 36792455 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36792455 |
| Simultaneous invasive and non-invasive recordings in humans: A novel Rosetta stone for deciphering brain activity. | Pigorini A, Avanzini P, Barborica A, Bénar CG, David O, Farisco M, Keller CJ, Manfridi A, Mikulan E, Paulk AC, Roehri N, Subramanian A, Vulliémoz S, Zelmann R | Journal of neuroscience methods | 38734149 | J Neurosci Methods | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38734149 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | Brain stimulation | 38821396 | Brain Stimul | 2024 May-Jun | https://www.ncbi.nlm.nih.gov/pubmed/38821396 |
| TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites. | Solomon EA, Wang JB, Oya H, Howard MA, Trapp NT, Uitermarkt BD, Boes AD, Keller CJ | bioRxiv : the preprint server for biology | 37645954 | bioRxiv | 2023 Nov 19 | https://www.ncbi.nlm.nih.gov/pubmed/37645954 |
| Scalp EEG predicts intracranial brain activity in humans. | Subramanian AK, Talbot A, Kim N, Parmigiani S, Cline CC, Solomon EA, Hartford JW, Huang Y, Mikulan E, Zauli FM, d'Orio P, Cardinale F, Mannini F, Pigorini A, Keller CJ | bioRxiv : the preprint server for biology | 40291696 | bioRxiv | 2025 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/40291696 |
| Sensory Entrained TMS (seTMS) enhances motor cortex plasticity. | Ross JM, Forman L, Hassan U, Gogulski J, Truong J, Cline CC, Parmigiani S, Chen NF, Hartford JW, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | bioRxiv : the preprint server for biology | 40777444 | bioRxiv | 2025 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/40777444 |
| Editorial: Inter- and Intra-subject Variability in Brain Imaging and Decoding. | Wei CS, Keller CJ, Li J, Lin YP, Nakanishi M, Wagner J, Wu W, Zhang Y, Jung TP | Frontiers in computational neuroscience | 34912203 | Front Comput Neurosci | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34912203 |
| Reliability of the TMS-evoked potential in dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 37732239 | bioRxiv | 2023 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/37732239 |
| Global connectivity and local excitability changes underlie antidepressant effects of repetitive transcranial magnetic stimulation. | Eshel N, Keller CJ, Wu W, Jiang J, Mills-Finnerty C, Huemer J, Wright R, Fonzo GA, Ichikawa N, Carreon D, Wong M, Yee A, Shpigel E, Guo Y, McTeague L, Maron-Katz A, Etkin A | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32053828 | Neuropsychopharmacology | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32053828 |
| Experimental suppression of transcranial magnetic stimulation-electroencephalography sensory potentials. | Ross JM, Sarkar M, Keller CJ | Human brain mapping | 35770956 | Hum Brain Mapp | 2022 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/35770956 |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | bioRxiv : the preprint server for biology | 36711689 | bioRxiv | 2023 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/36711689 |
| Mapping cortical excitability in the human dorsolateral prefrontal cortex. | Gogulski J, Cline CC, Ross JM, Truong J, Sarkar M, Parmigiani S, Keller CJ | Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology | 38865780 | Clin Neurophysiol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38865780 |
| Sensory Entrained TMS (seTMS) enhances motor cortex excitability. | Ross JM, Forman L, Gogulski J, Hassan U, Cline CC, Parmigiani S, Truong J, Hartford JW, Chen NF, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | bioRxiv : the preprint server for biology | 39651225 | bioRxiv | 2024 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/39651225 |
| A Practical Preprocessing Pipeline for Concurrent TMS-iEEG: Critical Steps and Methodological Considerations. | Li Z, Liu X, Tatz J, Hassan U, Wang JB, Keller CJ, Trapp NT, Boes AD, Jiang J | bioRxiv : the preprint server for biology | 40894703 | bioRxiv | 2025 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/40894703 |
| Sensory Entrained TMS (seTMS) Enhances Motor Cortex Excitability. | Ross JM, Forman L, Gogulski J, Hassan U, Cline CC, Parmigiani S, Truong J, Hartford JW, Chen NF, Fujioka T, Makeig S, Pascual-Leone A, Keller CJ | Human brain mapping | 40622189 | Hum Brain Mapp | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40622189 |
| RNA ensembles from in vitro to in vivo: Toward predictive models of RNA cellular function. | Li CY, Sandhu S, Ken ML | Current opinion in structural biology | 39401473 | Curr Opin Struct Biol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39401473 |
| Highlights of the 2023 Fetal, Infant, and Toddler Neuroimaging Group annual meeting. | Sylvester CM, Korom M, Camacho MC, Shultz S, Arichi T | Developmental cognitive neuroscience | 40447482 | Dev Cogn Neurosci | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40447482 |
| The Cognitive-Affective Social Processing and Emotion Regulation (CASPER) model. | Camacho MC, Deshpande E, Perino MT | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 40908288 | Neuropsychopharmacology | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/40908288 |
| Combining Sampling Methods with Attractor Dynamics in Spiking Models of Head-Direction Systems. | Pjanovic V, Zavatone-Veth J, Masset P, Keemink S, Nardin M | bioRxiv : the preprint server for biology | 40060526 | bioRxiv | 2025 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/40060526 |
| Dynamically Learning to Integrate in Recurrent Neural Networks. | Bordelon B, Cotler J, Pehlevan C, Zavatone-Veth JA | ArXiv | 40196143 | ArXiv | 2025 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/40196143 |
| Summary statistics of learning link changing neural representations to behavior. | Zavatone-Veth JA, Bordelon B, Pehlevan C | ArXiv | 40313661 | ArXiv | 2025 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/40313661 |
| Family Influences on Antiretroviral Therapy Adherence in Youth with HIV in the United States: A Systematic Review. | Rodriguez VJ, Gessert M, Guerra A | AIDS and behavior | 40289039 | AIDS Behav | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40289039 |
| Parental depressive symptoms and child psychopathology: Indirect effects of parenting-specific emotion regulation and emotion socialization. | Rodriguez VJ, Zegarac MC, Brumbaugh TS, La Barrie DL, Terry JB, Shaffer A | Family relations | 40452872 | Fam Relat | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40452872 |
| Parent discrimination clusters and pediatric health in a national survey: The modifying effect of parenting. | Rodriguez VJ, La Barrie DL | SSM - population health | 40034937 | SSM Popul Health | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40034937 |
| Assessing parenting in racially and ethnically diverse families: A lack of measurement equivalence. | Rodriguez VJ, Cadet GJ, Sisitsky M, Cooley C, Acosta J, Coles E, Charity-Parker B, Walters A, Shaffer A, Parent J | Journal of family psychology : JFP : journal of the Division of Family Psychology of the American Psychological Association (Division 43) | 37141011 | J Fam Psychol | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37141011 |
| Psychometrics of the Children's Report of Parental Behavior Inventory among caregivers and youth with HIV. | Rodriguez VJ, Kendall AD, Cohen MH, Nsanzimana S, Ingabire C, Remera E, Donenberg G | Journal of family psychology : JFP : journal of the Division of Family Psychology of the American Psychological Association (Division 43) | 38451718 | J Fam Psychol | 2024 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/38451718 |
| Disentangling the Heterogeneity in Minority Stress: A Data Mining Approach. | Liu Q, Rodriguez VJ, Nestor BA, Trichtinger LA, Chandler C, Friedman MR | Archives of sexual behavior | 40940595 | Arch Sex Behav | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40940595 |
| The 3,4-methylenedioxymethamphetamine enhances early visual processing for salient socio-emotional stimuli. | Haggarty CJ, Bershad AK, Kumar MK, Lee R, de Wit H | The European journal of neuroscience | 38637983 | Eur J Neurosci | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38637983 |
| MDMA enhances positive affective responses to social feedback. | Bershad AK, Hsu DT, de Wit H | Journal of psychopharmacology (Oxford, England) | 38279662 | J Psychopharmacol | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38279662 |
| For those with schizophrenia, does cannabidiol make cannabis use safer? | Bershad AK | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 40859007 | Neuropsychopharmacology | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40859007 |
| Altered States and Social Bonds: Effects of MDMA and Serotonergic Psychedelics on Social Behavior as a Mechanism Underlying Substance-Assisted Therapy. | Schmid Y, Bershad AK | Biological psychiatry. Cognitive neuroscience and neuroimaging | 38341085 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38341085 |
| Quantized multi-task learning for context-specific representations of gene network dynamics. | Chen H, Venkatesh MS, Ortega JG, Mahesh SV, Nandi TN, Madduri RK, Pelka K, Theodoris CV | bioRxiv : the preprint server for biology | 39229018 | bioRxiv | 2024 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/39229018 |
| Multiplex generation and single-cell analysis of structural variants in mammalian genomes. | Pinglay S, Lalanne JB, Daza RM, Kottapalli S, Quaisar F, Koeppel J, Garge RK, Li X, Lee DS, Shendure J | Science (New York, N.Y.) | 39883753 | Science | 2025 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/39883753 |
| Multiplex generation and single cell analysis of structural variants in a mammalian genome. | Pinglay S, Lalanne JB, Daza RM, Koeppel J, Li X, Lee DS, Shendure J | bioRxiv : the preprint server for biology | 38405830 | bioRxiv | 2024 Feb 12 | https://www.ncbi.nlm.nih.gov/pubmed/38405830 |
| Neonatal microglia replacement in mice modulates seizure severity in adulthood. | O'Brien CA, Delcy SAS, Shukla S, Levitt EM, Cohen AS, Bennett ML, Bennett FC | Molecular therapy : the journal of the American Society of Gene Therapy | 40873033 | Mol Ther | 2025 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/40873033 |
| The prototypical interferonopathy: Aicardi-Goutières syndrome from bedside to bench. | Hofer MJ, Modesti N, Coufal NG, Wang Q, Sase S, Miner JJ, Vanderver A, Bennett ML | Immunological reviews | 39473130 | Immunol Rev | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39473130 |
| Direct microglia replacement reveals pathologic and therapeutic contributions of brain macrophages to a monogenic neurological disease. | Aisenberg WH, O'Brien CA, Sangster M, Yaqoob F, Zhang Y, Temsamrit B, Thom S, Gosse L, Chaluvadi S, Elfayomi B, Lee G, Polam V, Levitt EM, Liu G, Lombroso SI, Nemec KM, Clowry G, Nieves C, Rawat P, Church E, Martinez D, Shoffler C, Kancheva D, Petucci C, Taylor D, Kofler J, Erskine D, Movahedi K, Bennett ML, Bennett FC | Immunity | 40311614 | Immunity | 2025 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/40311614 |
| Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières Syndrome neuropathology. | Nemec KM, Uy G, Chaluvadi VS, Purnell FS, Elfayoumi B, Byerly L, O'Reilly ML, O'Brien CA, Aisenberg WH, Lombroso SI, Guo X, Blank N, Oon CH, Yaqoob F, Temsamrit B, Rawat P, Thaiss CA, Bailis W, Williamson AP, Wang Q, Bennett ML, Bennett FC | bioRxiv : the preprint server for biology | 39345609 | bioRxiv | 2025 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/39345609 |
| ComBatLS: A location- and scale-preserving method for multi-site image harmonization. | Gardner M, Shinohara RT, Bethlehem RAI, Romero-Garcia R, Warrier V, Dorfschmidt L, Lifespan Brain Chart Consortium, Shanmugan S, Thompson P, Seidlitz J, Alexander-Bloch AF, Chen AA | bioRxiv : the preprint server for biology | 39131292 | bioRxiv | 2024 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/39131292 |
| Reproducible Sex Differences in Personalized Functional Network Topography in Youth. | Keller AS, Sun KY, Francisco A, Robinson H, Beydler E, Bassett DS, Cieslak M, Cui Z, Davatzikos C, Fan Y, Gardner M, Kishton R, Kornfield SL, Larsen B, Li H, Linder I, Pines A, Pritschet L, Raznahan A, Roalf DR, Seidlitz J, Shafiei G, Shinohara RT, Wolf DH, Alexander-Bloch A, Satterthwaite TD, Shanmugan S | bioRxiv : the preprint server for biology | 39386637 | bioRxiv | 2024 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/39386637 |
| An open, fully-processed data resource for studying mood and sleep variability in the developing brain. | Brook JBH, Salo T, Luo AC, Bagautdinova J, Rush S, Alexander-Bloch AF, Baller EB, Calkins ME, Cieslak M, Cooper EC, Detre JA, Elliot MA, Fair DA, Freedman P, Gehrman PR, Gur RC, Gur RE, Klein A, Laney N, Laumann TO, Mehta K, Merikangas K, Milham MP, Mitchell JA, Moore TM, Nelson SM, Ruparel K, Sevchik BL, Shanmugan S, Shou H, Taso M, White LK, Wolf DH, Tisdall MD, Roalf DR, Satterthwaite TD | bioRxiv : the preprint server for biology | 40463267 | bioRxiv | 2025 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/40463267 |
| Generalizable Links Between Borderline Personality Traits and Functional Connectivity. | Shafiei G, Keller AS, Bertolero M, Shanmugan S, Bassett DS, Chen AA, Covitz S, Houghton A, Luo A, Mehta K, Salo T, Shinohara RT, Fair D, Hallquist MN, Satterthwaite TD | Biological psychiatry | 38460580 | Biol Psychiatry | 2024 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/38460580 |
| Evidence for missed cases of postpartum depression based on paediatric clinical care screenings. | White LK, Perlstein S, Gorgone A, Himes MM, Kornfield SL, Shanmugan S, Weitz E, Njoroge WFM, Duncan AF, Burris HH, Laney N, Gur RE, Waller RE, Chaiyachati BH | The British journal of psychiatry : the journal of mental science | 40545256 | Br J Psychiatry | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40545256 |
| Toward personalized clinical interventions for perinatal depression: Leveraging precision functional mapping. | Pritschet L, Beydler E, Shanmugan S | Science advances | 40043108 | Sci Adv | 2025 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/40043108 |
| Reproducible sex differences in personalised functional network topography in youth. | Keller AS, Sun KY, Francisco A, Robinson H, Beydler E, Bassett DS, Cieslak M, Cui Z, Davatzikos C, Fan Y, Gardner M, Kishton R, Kornfield SL, Larsen B, Li H, Linder I, Pines A, Pritschet L, Raznahan A, Roalf DR, Seidlitz J, Shafiei G, Shinohara RT, White LK, Wolf DH, Alexander-Bloch A, Satterthwaite TD, Shanmugan S | The British journal of psychiatry : the journal of mental science | 40536230 | Br J Psychiatry | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40536230 |
| ComBatLS: A Location- and Scale-Preserving Method for Multi-Site Image Harmonization. | Gardner M, Shinohara RT, Bethlehem RAI, Romero-Garcia R, Warrier V, Dorfschmidt L, Lifespan Brain Chart Consortium, Shanmugan S, Thompson P, Seidlitz J, Alexander-Bloch AF, Chen AA | Human brain mapping | 40497521 | Hum Brain Mapp | 2025 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/40497521 |
| Reciprocal projections between the globus pallidus externa and cortex span motor and nonmotor regions. | Ferenczi EA, Wang W, Biswas A, Pottala T, Dong Y, Chan AK, Albanese MA, Sohur RS, Jia T, Mastro KJ, Sabatini BL | Proceedings of the National Academy of Sciences of the United States of America | 40460125 | Proc Natl Acad Sci U S A | 2025 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/40460125 |
| Projections between the globus pallidus externa and cortex span motor and non-motor regions. | Ferenczi EA, Wang W, Biswas A, Pottala T, Dong Y, Chan AK, Albanese MA, Sohur RS, Jia T, Mastro KJ, Sabatini BL | bioRxiv : the preprint server for biology | 39574769 | bioRxiv | 2024 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/39574769 |
| A spatiotemporal map of co-receptor signaling networks underlying B cell activation. | Susa KJ, Bradshaw GA, Eisert RJ, Schilling CM, Kalocsay M, Blacklow SC, Kruse AC | Cell reports | 38850533 | Cell Rep | 2024 Jun 25 | https://www.ncbi.nlm.nih.gov/pubmed/38850533 |
| Tetraspanins: structure, dynamics, and principles of partner-protein recognition. | Susa KJ, Kruse AC, Blacklow SC | Trends in cell biology | 37783654 | Trends Cell Biol | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37783654 |
| A genome-wide association study using HapMap cell lines reveals modulators of cellular response to cyclophosphamide. | Gbadamosi MO, Bhise N, Ghosh TM, Molchan EK, Streeks K, Puglise J, Ohaegbulam A, Makarem M, Olabige O, Yang C, Ricks-Santi L, Mitchell DA, Fridley BL, Lamba JK | Future oncology (London, England) | 40356407 | Future Oncol | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40356407 |
| Chemoimmunomodulation in triple negative breast cancer: a key to maximizing anti-PD-1 chemoimmunotherapeutic efficacy. | Gbadamosi MO, Molchan E, Makarem MS, Coleman KL, Ohaegbulam AC, Streeks KH | Oncoimmunology | 40631451 | Oncoimmunology | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/40631451 |
| UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability. | Tsai JM, Aguirre JD, Li YD, Brown J, Focht V, Kater L, Kempf G, Sandoval B, Schmitt S, Rutter JC, Galli P, Sandate CR, Cutler JA, Zou C, Donovan KA, Lumpkin RJ, Cavadini S, Park PMC, Sievers Q, Hatton C, Ener E, Regalado BD, Sperling MT, Słabicki M, Kim J, Zon R, Zhang Z, Miller PG, Belizaire R, Sperling AS, Fischer ES, Irizarry R, Armstrong SA, Thomä NH, Ebert BL | Molecular cell | 37478846 | Mol Cell | 2023 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/37478846 |
| Haploinsufficiency of ITSN1 is associated with a substantial increased risk of Parkinson's disease. | Spargo TP, Sands CF, Juan IR, Mitchell J, Ravanmehr V, Butts JC, De-Paula RB, Kim Y, Hu F, Wang Q, Vitsios D, Garg M, Middleton L, Tyrlik M, Messa M, Del Angel G, Calame DG, Saade H, Robak L, Hollis B, Cuddapah VA, Zoghbi HY, Shulman JM, Petrovski S, Al-Ramahi I, Tachmazidou I, Dhindsa RS | Cell reports | 40056900 | Cell Rep | 2025 Mar 25 | https://www.ncbi.nlm.nih.gov/pubmed/40056900 |
| A single-cell transcriptomic map of the developing Atoh1 lineage identifies neural fate decisions and neuronal diversity in the hindbrain. | Butts JC, Wu SR, Durham MA, Dhindsa RS, Revelli JP, Ljungberg MC, Saulnier O, McLaren ME, Taylor MD, Zoghbi HY | Developmental cell | 39106860 | Dev Cell | 2024 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/39106860 |
| Genome-wide prediction of dominant and recessive neurodevelopmental disorder-associated genes. | Dhindsa RS, Weido BA, Dhindsa JS, Shetty AJ, Sands CF, Petrovski S, Vitsios D, Zoghbi AW | American journal of human genetics | 40015282 | Am J Hum Genet | 2025 Mar 6 | https://www.ncbi.nlm.nih.gov/pubmed/40015282 |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Thomas MA, Wright Z, Chucair-Elliott AJ, Freeman WM | Journal of neuroinflammation | 37587511 | J Neuroinflammation | 2023 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/37587511 |
| Role of Estrogen Receptor α in Aging and Chronic Disease. | Isola JVV, Ko S, Ocañas SR, Stout MB | Advances in geriatric medicine and research | 37425648 | Adv Geriatr Med Res | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37425648 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley KB, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | GeroScience | 37393197 | Geroscience | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37393197 |
| Specificity and efficiency of tamoxifen-mediated Cre induction is equivalent regardless of age. | Kellogg CM, Pham K, Ko S, Cox JEJ, Machalinski AH, Stout MB, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | iScience | 38058312 | iScience | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/38058312 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Hoolehan W, Kulpa AM, Stanford DR, Freeman WM | Epigenetics & chromatin | 37953264 | Epigenetics Chromatin | 2023 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/37953264 |
| Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease. | Ocañas SR, Pham KD, Cox JEJ, Keck AW, Ko S, Ampadu FA, Porter HL, Ansere VA, Kulpa A, Kellogg CM, Machalinski AH, Chucair-Elliott AJ, Freeman WM | bioRxiv : the preprint server for biology | 36945656 | bioRxiv | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36945656 |
| Microglial MHC-I induction with aging and Alzheimer's is conserved in mouse models and humans. | Kellogg CM, Pham K, Machalinski AH, Porter HL, Blankenship HE, Tooley K, Stout MB, Rice HC, Sharpe AL, Beckstead MJ, Chucair-Elliott AJ, Ocañas SR, Freeman WM | bioRxiv : the preprint server for biology | 36945372 | bioRxiv | 2023 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/36945372 |
| Flow Cytometry Analysis of Microglial Phenotypes in the Murine Brain During Aging and Disease. | Cox JEJ, Pham KD, Keck AW, Wright Z, Thomas MA, Freeman WM, Ocañas SR | Bio-protocol | 38948260 | Bio Protoc | 2024 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/38948260 |
| Differential usage of DNA modifications in neurons, astrocytes, and microglia. | Tooley KB, Chucair-Elliott AJ, Ocañas SR, Machalinski AH, Pham KD, Stanford DR, Freeman WM | bioRxiv : the preprint server for biology | 37333391 | bioRxiv | 2023 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/37333391 |
| Chromosomal and gonadal factors regulate microglial sex effects in the aging brain. | Ocañas SR, Ansere VA, Kellogg CM, Isola JVV, Chucair-Elliott AJ, Freeman WM | Brain research bulletin | 36804773 | Brain Res Bull | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36804773 |
| Protocol to isolate oligodendrocytes, microglia, endothelial cells, astrocytes, and neurons from a single mouse brain using magnetic-activated cell sorting. | Houmam S, Siodlak D, Pham KD, Salinas-Salinas C, Ocañas SR, Freeman WM, Rice HC | bioRxiv : the preprint server for biology | 40832248 | bioRxiv | 2025 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/40832248 |
| Prairie vole pair bonding and plasticity of the social brain. | Hiura LC, Donaldson ZR | Trends in neurosciences | 36369029 | Trends Neurosci | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36369029 |
| Leveraging individual power to improve racial equity in academia. | Monari PK, Hammond ER, Malone CL, Cuarenta A, Hiura LC, Wallace KJ, Taylor L, Pradhan DS | Hormones and behavior | 37030195 | Horm Behav | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37030195 |
| Behavioral sex differences in the developmental emergence and selectivity of partner preferences in prairie voles. | Schaepe CA, Hiura LC | Hormones and behavior | 40532532 | Horm Behav | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40532532 |
| A universal method for the purification of C2H2 zinc finger arrays. | Liang J, Azubel M, Wang G, Nie Y, Kornberg RD, Beel AJ, Mattei PJ | PloS one | 39903729 | PLoS One | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/39903729 |
| Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening. | Tan J, Shenker-Tauris N, Rodriguez-Hernaez J, Wang E, Sakellaropoulos T, Boccalatte F, Thandapani P, Skok J, Aifantis I, Fenyö D, Xia B, Tsirigos A | Nature biotechnology | 36624151 | Nat Biotechnol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36624151 |
| Cellular dynamics in pig-to-human kidney xenotransplantation. | Pan W, Zhang W, Zheng B, Camellato BR, Stern J, Lin Z, Khodadadi-Jamayran A, Kim J, Sommer P, Khalil K, Weldon E, Bai J, Zhu Y, Meyn P, Heguy A, Mangiola M, Griesemer A, Keating BJ, Montgomery RA, Xia B, Boeke JD | Med (New York, N.Y.) | 38776915 | Med | 2024 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/38776915 |
| Multimodal learning decodes the global binding landscape of chromatin-associated proteins. | Tan J, Fu X, Ling X, Mo S, Bai J, Rabadán R, Fenyö D, Boeke JD, Tsirigos A, Xia B | bioRxiv : the preprint server for biology | 40832322 | bioRxiv | 2025 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/40832322 |
| On the genetic basis of tail-loss evolution in humans and apes. | Xia B, Zhang W, Zhao G, Zhang X, Bai J, Brosh R, Wudzinska A, Huang E, Ashe H, Ellis G, Pour M, Zhao Y, Coelho C, Zhu Y, Miller A, Dasen JS, Maurano MT, Kim SY, Boeke JD, Yanai I | Nature | 38418917 | Nature | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38418917 |
| Dietary Interventions in Cancer Treatment and Response: A Comprehensive Review. | Mercier BD, Tizpa E, Philip EJ, Feng Q, Huang Z, Thomas RM, Pal SK, Dorff TB, Li YR | Cancers | 36291933 | Cancers (Basel) | 2022 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/36291933 |
| Moving the Needle Forward in Genomically-Guided Precision Radiation Treatment. | Tam A, Mercier BD, Thomas RM, Tizpa E, Wong IG, Shi J, Garg R, Hampel H, Gray SW, Williams T, Bazan JG, Li YR | Cancers | 38001574 | Cancers (Basel) | 2023 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/38001574 |
| Long-Term Latency of Highly Mutated Cells in Normal Mouse Skin Is Reversed by Exposure to Tumor Promoters and Chronic Tissue Damage. | Li YR, Kandyba E, Halliwill K, Delrosario R, Tran Q, Bayani N, Wu D, Mirzoeva OK, Reeves MQ, Islam SMA, Riva L, Bergstrom EN, Achanta K, DiGiovanni J, Alexandrov LB, Balmain A | Cancer discovery | 40073432 | Cancer Discov | 2025 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/40073432 |
| Grade 5 Radiation Necrosis After Whole-Brain Radiation Therapy. | Tam A, Li YR, Williams T, Yoon S | Practical radiation oncology | 38431371 | Pract Radiat Oncol | 2024 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/38431371 |
| Intermittent fasting interventions to leverage metabolic and circadian mechanisms for cancer treatment and supportive care outcomes. | Kalam F, James DL, Li YR, Coleman MF, Kiesel VA, Cespedes Feliciano EM, Hursting SD, Sears DD, Kleckner AS | Journal of the National Cancer Institute. Monographs | 37139971 | J Natl Cancer Inst Monogr | 2023 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/37139971 |
| Key takeaways for knowledge expansion of early-career scientists conducting Transdisciplinary Research in Energetics and Cancer (TREC): a report from the TREC Training Workshop 2022. | Kung CP, Skiba MB, Crosby EJ, Gorzelitz J, Kennedy MA, Kerr BA, Li YR, Nash S, Potiaumpai M, Kleckner AS, James DL, Coleman MF, Fairman CM, Galván GC, Garcia DO, Gordon MJ, His M, Hornbuckle LM, Kim SY, Kim TH, Kumar A, Mahé M, McDonnell KK, Moore J, Oh S, Sun X, Irwin ML | Journal of the National Cancer Institute. Monographs | 37139978 | J Natl Cancer Inst Monogr | 2023 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/37139978 |
| Experience From an Early Exposure Education Program in Radiation Oncology for High School and Undergraduate Students. | Tam A, Ladbury C, Glaser S, Amini A, Chen YJ, Li YR | Practical radiation oncology | 38810923 | Pract Radiat Oncol | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/38810923 |
| Ignorance is Bliss? A Case of Incidental Discovery of ATM Mutation in Prostate Cancer. | Tam A, Li YR | International journal of radiation oncology, biology, physics | 38049230 | Int J Radiat Oncol Biol Phys | 2024 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/38049230 |
| Residential Proximity to Oil and Gas Development and Mental Health in a North American Preconception Cohort Study: 2013-2023. | Willis MD, Campbell EJ, Selbe S, Koenig MR, Gradus JL, Nillni YI, Casey JA, Deziel NC, Hatch EE, Wesselink AK, Wise LA | American journal of public health | 38991173 | Am J Public Health | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38991173 |
| Evaluating participant engagement in a preconception cohort study in relation to the Dobbs decision. | Willis MD, Hoffman MN, Wang TR, Sabbath EL, Kuriyama AS, Wesselink AK, Wise LA | Paediatric and perinatal epidemiology | 38666636 | Paediatr Perinat Epidemiol | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38666636 |
| Invited commentary: improving spatial exposure data for everyone-life-course social context and ascertaining residential history. | Sims KD, Glymour MM, Ncube CN, Willis MD | American journal of epidemiology | 39098825 | Am J Epidemiol | 2025 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/39098825 |
| It's electric! An environmental equity perspective on the lifecycle of our energy sources. | Willis MD, Cushing LJ, Buonocore JJ, Deziel NC, Casey JA | Environmental epidemiology (Philadelphia, Pa.) | 37064423 | Environ Epidemiol | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37064423 |
| Wildfires increasingly threaten oil and gas wells in the western United States with disproportionate impacts on marginalized populations. | González DJX, Morello-Frosch R, Liu Z, Willis MD, Feng Y, McKenzie LM, Steiger BB, Wang J, Deziel NC, Casey JA | One earth (Cambridge, Mass.) | 39036466 | One Earth | 2024 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/39036466 |
| A Narrative Review of Spatial-Temporal Data Sources for Estimating Population-Level Exposures to Oil and Gas Development in the United States. | Campbell EJ, Koenig MR, Mooney FA, Clark CJ, González DJX, Deziel NC, Casey JA, Buonocore JJ, Willis MD | Current environmental health reports | 40263220 | Curr Environ Health Rep | 2025 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/40263220 |
| Invited Perspective: Drilling Down into the Mechanisms Linking Oil and Gas Development to Adverse Perinatal Health Outcomes. | Casey JA, Willis MD | Environmental health perspectives | 39412280 | Environ Health Perspect | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39412280 |
| Evolutionary-Scale Enzymology Enables Biochemical Constant Prediction Across a Multi-Peaked Catalytic Landscape. | Muir DF, Asper GPR, Notin P, Posner JA, Marks DS, Keiser MJ, Pinney MM | bioRxiv : the preprint server for biology | 39484523 | bioRxiv | 2024 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/39484523 |
| Evolutionary-scale enzymology enables exploration of a rugged catalytic landscape. | Muir DF, Asper GPR, Notin P, Posner JA, Marks DS, Keiser MJ, Pinney MM | Science (New York, N.Y.) | 40504906 | Science | 2025 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/40504906 |
| Kir4.2 mediates proximal potassium effects on glutaminase activity and kidney injury. | Terker AS, Zhang Y, Arroyo JP, Cao S, Wang S, Fan X, Denton JS, Zhang MZ, Harris RC | Cell reports | 36543132 | Cell Rep | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36543132 |
| Kidney collecting duct-derived vasopressin is not essential for appropriate concentration or dilution of urine. | Zuchowski Y, Carty JS, Trapani JB, Watts JA, Bock F, Zhang M, Terker AS, Zent R, Delpire E, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 38695074 | Am J Physiol Renal Physiol | 2024 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/38695074 |
| Rac1 promotes kidney collecting duct repair by mechanically coupling cell morphology to mitotic entry. | Bock F, Dong X, Li S, Viquez OM, Sha E, Tantengco M, Hennen EM, Plosa E, Ramezani A, Brown KL, Whang YM, Terker AS, Arroyo JP, Harrison DG, Fogo A, Brakebusch CH, Pozzi A, Zent R | Science advances | 38324689 | Sci Adv | 2024 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/38324689 |
| Myeloid EGFR deficiency accelerates recovery from AKI via macrophage efferocytosis and neutrophil apoptosis. | Pan Y, Cao S, Wang Y, Tang J, Niu A, Kar SA, Jiang M, Peng F, Siew GM, Lu W, Wang S, Wilson M, Brooks C, Fogo AB, Terker AS, Ornelas JPA, Chen J, Zhang MZ, Harris RC | Nature communications | 40379634 | Nat Commun | 2025 May 16 | https://www.ncbi.nlm.nih.gov/pubmed/40379634 |
| VU6036720: The First Potent and Selective In Vitro Inhibitor of Heteromeric Kir4.1/5.1 Inward Rectifier Potassium Channels. | McClenahan SJ, Kent CN, Kharade SV, Isaeva E, Williams JC, Han C, Terker A, Gresham R 3rd, Lazarenko RM, Days EL, Romaine IM, Bauer JA, Boutaud O, Sulikowski GA, Harris R, Weaver CD, Staruschenko A, Lindsley CW, Denton JS | Molecular pharmacology | 35246480 | Mol Pharmacol | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35246480 |
| Insulin-regulated aminopeptidase is required for water excretion in response to acute hypotonic stress. | Zuchowski Y, Carty J, Terker AS, Bock F, Trapani JB, Bhave G, Watts JA, Keller S, Zhang M, Zent R, Harris RC, Arroyo JP | American journal of physiology. Renal physiology | 36995926 | Am J Physiol Renal Physiol | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36995926 |
| Bicarbonate is the primary inducer of KCC3a expression in renal cortical B-type intercalated cells. | Ferdaus MZ, Terker AS, Koumangoye R, Wall SM, Delpire E | American journal of physiology. Cell physiology | 37036298 | Am J Physiol Cell Physiol | 2023 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/37036298 |
| Disruption of mitochondrial electron transport impairs urinary concentration via AMPK-dependent suppression of aquaporin 2. | Carty JS, Bessho R, Zuchowski Y, Trapani JB, Davidoff O, Kobayashi H, Roland JT, Watts JA, Terker AS, Bock F, Arroyo JP, Haase VH | JCI insight | 39361429 | JCI Insight | 2024 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/39361429 |
| Plasma Potassium Negatively Correlates With Sodium Chloride Cotransporter Abundance and Phosphorylation in Urinary Extracellular Vesicles From Patients With Chronic Kidney Disease. | Wu A, Wolley MJ, Vesey D, Terker AS, Welling PA, Fenton RA, Stowasser M | Nephrology (Carlton, Vic.) | 40084744 | Nephrology (Carlton) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40084744 |
| KCC3 is not required for the distal convoluted tubule response to reduced dietary potassium intake. | Inoue MK, Yu A, Ferdaus MZ, Zhang Y, Su XT, Bock F, Arroyo JP, Cho KY, Ellison DH, Zhang MZ, Harris RC, Delpire E, Terker AS | American journal of physiology. Renal physiology | 40875335 | Am J Physiol Renal Physiol | 2025 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/40875335 |
| Low potassium activation of proximal mTOR/AKT signaling is mediated by Kir4.2. | Zhang Y, Bock F, Ferdaus M, Arroyo JP, L Rose K, Patel P, Denton JS, Delpire E, Weinstein AM, Zhang MZ, Harris RC, Terker AS | Nature communications | 38886379 | Nat Commun | 2024 Jun 17 | https://www.ncbi.nlm.nih.gov/pubmed/38886379 |
| Deletion of KS-WNK1 promotes NCC activation by increasing WNK1/4 abundance. | Ferdaus MZ, Terker AS, Koumangoye RB, Al-Qusairi L, Welling PA, Delpire E | American journal of physiology. Renal physiology | 38961847 | Am J Physiol Renal Physiol | 2024 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/38961847 |
| Macrophage SPAK deletion limits a low potassium-induced kidney inflammatory program. | Wu A, Zhang Y, Bock F, Arroyo JP, Delpire E, Zhang MZ, Harris RC, Terker AS | American journal of physiology. Renal physiology | 39298551 | Am J Physiol Renal Physiol | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39298551 |
| Synaptic proteins that aggregate and degrade slower with aging accumulate in microglia. | Guldner IH, Wagner VP, Moran-Losada P, Shi SM, Chen K, Meese BT, Oh H, Le Guen Y, Lu N, Wong PS, To NS, Garceau D, Guo Z, Luo J, Sasner M, Keller A, Yang AC, Cheung T, Wyss-Coray T | bioRxiv : the preprint server for biology | 40475609 | bioRxiv | 2025 May 21 | https://www.ncbi.nlm.nih.gov/pubmed/40475609 |
| Bivalent mRNA booster encoding virus-like particles elicits potent polyclass RBD antibodies in pre-vaccinated mice. | Fan C, Cohen AA, Dam KA, Rorick AV, Priso Fils AI, Yang Z, Gnanapragasam PNP, Segovia LN, Huey-Tubman KE, Moon WJ, Lin PJC, Bjorkman PJ, Hoffmann MAG | bioRxiv : the preprint server for biology | 40894670 | bioRxiv | 2025 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/40894670 |
| ESCRT recruitment to SARS-CoV-2 spike induces virus-like particles that improve mRNA vaccines. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, West AP Jr, Bjorkman PJ | Cell | 37146611 | Cell | 2023 May 25 | https://www.ncbi.nlm.nih.gov/pubmed/37146611 |
| ESCRT recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like particles and enhanced antibody responses. | Hoffmann MAG, Yang Z, Huey-Tubman KE, Cohen AA, Gnanapragasam PNP, Nakatomi LM, Storm KN, Moon WJ, Lin PJC, Bjorkman PJ | bioRxiv : the preprint server for biology | 36597535 | bioRxiv | 2022 Dec 27 | https://www.ncbi.nlm.nih.gov/pubmed/36597535 |
| N4BP1 coordinates ubiquitin-dependent crosstalk within the IκB kinase family to limit Toll-like receptor signaling and inflammation. | Gitlin AD, Maltzman A, Kanno Y, Heger K, Reja R, Schubert AF, Wierciszewski LJ, Pantua H, Kapadia SB, Harris SF, Webster JD, Newton K, Dixit VM | Immunity | 38697117 | Immunity | 2024 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/38697117 |
| Advances in the discovery and analyses of human tandem repeats. | Chaisson MJP, Sulovari A, Valdmanis PN, Miller DE, Eichler EE | Emerging topics in life sciences | 37905568 | Emerg Top Life Sci | 2023 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/37905568 |
| Subdural hemorrhage, macrocephaly, rash, and developmental delay in an infant: A pathogenic variant in NLRP3 causes CINCA/NOMID. | Koti AS, Lanis A, Finlayson S, Canny S, Feldman EA, Miller DE, Rosenwasser N, Scott AA, Wong SC, Feldman KW | American journal of medical genetics. Part A | 37548074 | Am J Med Genet A | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37548074 |
| Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | G3 (Bethesda, Md.) | 37552705 | G3 (Bethesda) | 2023 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/37552705 |
| CFAP47 is a novel causative gene implicated in X-linked polycystic kidney disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MP, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | medRxiv : the preprint server for health sciences | 38633811 | medRxiv | 2024 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/38633811 |
| Long-Read Sequencing is Required for Precision Diagnosis of Incontinentia Pigmenti. | Wojcik MH, Clark RD, Elias AF, Genetti CA, Madden JA, Simpson D, Golkar L, Zalusky MP, Miller AL, Rodriguez A, Goffena J, Dash CA, Damaraju N, Gibson SB, Storz SH, Anderson Z, Gustafson JA, Thiffault I, Farrow EG, Pastinen T, Lin J, Huang J, Beggs AH, Agrawal PB, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Miller DT, Miller DE | Research square | 39975911 | Res Sq | 2025 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/39975911 |
| Long-Read DNA and RNA Sequencing to Streamline Clinical Genetic Testing and Reduce Barriers to Comprehensive Genetic Testing. | Damaraju N, Miller AL, Miller DE | The journal of applied laboratory medicine | 38167773 | J Appl Lab Med | 2024 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/38167773 |
| 3-hour genome sequencing and targeted analysis to rapidly assess genetic risk. | Zalusky MP, Gustafson JA, Bohaczuk SC, Mallory B, Reed P, Wenger T, Beckman E, Chang IJ, Paschal CR, Buchan JG, Lockwood CM, Puia-Dumitrescu M, Garalde DR, Guillory J, Markham AJ, Bamshad MJ, Eichler EE, Stergachis AB, Miller DE | Genetics in medicine open | 39421454 | Genet Med Open | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39421454 |
| Clinical RNA sequencing clarifies variants of uncertain significance identified by prior testing. | Marquez J, Cech JN, Paschal CR, Dingmann B, Scott AI, Thies JM, Mills MR, Albert CM, Beck AE, Beckman E, Bonkowski ES, Earl DL, Lam CT, Mefford HC, Merritt JL 2nd, Nelson Z, Ohlsen TJ, Taylor MR, Perlman SJ, Rudzinski ER, Sikes MC, Waligorski N, Wenger TL, Adam MP, Mirzaa GM, Bennett JT, Glass IA, Sternen DL, Miller DE | Genetics in medicine open | 39484203 | Genet Med Open | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39484203 |
| CFAP47 is Implicated in X-Linked Polycystic Kidney Disease. | Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MPG, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K, University of Washington Center for Rare Disease Research, Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E | Kidney international reports | 39698362 | Kidney Int Rep | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39698362 |
| Concordance of Whole-Genome Long-Read Sequencing with Standard Clinical Testing for Prader-Willi and Angelman Syndromes. | Paschal CR, Zalusky MPG, Beck AE, Gillentine MA, Narayanan J, Damaraju N, Goffena J, Storz SHR, Miller DE | The Journal of molecular diagnostics : JMD | 39756651 | J Mol Diagn | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39756651 |
| GENOME REPORT: Chromosome-scale genome assembly of the African spiny mouse ( Acomys cahirinus ). | Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE | bioRxiv : the preprint server for biology | 37066261 | bioRxiv | 2023 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/37066261 |
| Characteristics, Genetic Testing, and Diagnoses of Infants with Neonatal Encephalopathy Not Due to Hypoxic Ischemic Encephalopathy: A Cohort Study. | Lenahan A, Mietzsch U, Wood TR, Callahan KP, Weiss EM, Miller DE, German K, Natarajan N, Puia-Dumitrescu M, Esposito V, Kolnik S, Law JB | The Journal of pediatrics | 37269901 | J Pediatr | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37269901 |
| Diagnostic utility of DNA methylation analysis in genetically unsolved pediatric epilepsies and CHD2 episignature refinement. | LaFlamme CW, Rastin C, Sengupta S, Pennington HE, Russ-Hall SJ, Schneider AL, Bonkowski ES, Almanza Fuerte EP, Allan TJ, Zalusky MP, Goffena J, Gibson SB, Nyaga DM, Lieffering N, Hebbar M, Walker EV, Darnell D, Olsen SR, Kolekar P, Djekidel MN, Rosikiewicz W, McConkey H, Kerkhof J, Levy MA, Relator R, Lev D, Lerman-Sagie T, Park KL, Alders M, Cappuccio G, Chatron N, Demain L, Genevieve D, Lesca G, Roscioli T, Sanlaville D, Tedder ML, Gupta S, Jones EA, Weisz-Hubshman M, Ketkar S, Dai H, Worley KC, Rosenfeld JA, Chao HT, Undiagnosed Diseases Network, Neale G, Carvill GL, University of Washington Center for Rare Disease Research, Wang Z, Berkovic SF, Sadleir LG, Miller DE, Scheffer IE, Sadikovic B, Mefford HC | Nature communications | 39107278 | Nat Commun | 2024 Aug 6 | https://www.ncbi.nlm.nih.gov/pubmed/39107278 |
| Patterns of crossover distribution in Drosophila mauritiana necessitate a re-thinking of the centromere effect on crossing over. | Hawley RS, Price A, Li H, Jagannathan M, Staber C, Hughes SE, Williams S, Perera A, Egidy RR, Lawlor A, Miller DE, Blumenstiel JP | Genetics | 40052765 | Genetics | 2025 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/40052765 |
| Bidirectional disruption of GNAS transcripts causes broad methylation defects in pseudohypoparathyroidism type 1B. | Iwasaki Y, Reyes M, Ryabets-Lienhard A, Gales B, Linglart A, Miller DE, Salusky IB, Bastepe M, Jüppner H | Proceedings of the National Academy of Sciences of the United States of America | 40249781 | Proc Natl Acad Sci U S A | 2025 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/40249781 |
| Heterozygous inversion breakpoints suppress meiotic crossovers by altering recombination repair outcomes. | Li H, Berent E, Hadjipanteli S, Galey M, Muhammad-Lahbabi N, Miller DE, Crown KN | PLoS genetics | 37053290 | PLoS Genet | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37053290 |
| Beyond the exome: What's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | American journal of human genetics | 37541186 | Am J Hum Genet | 2023 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/37541186 |
| Long-read sequencing of hundreds of diverse brains provides insight into the impact of structural variation on gene expression and DNA methylation. | Billingsley KJ, Meredith M, Daida K, Jerez PA, Negi S, Malik L, Genner RM, Moller A, Zheng X, Gibson SB, Mastoras M, Baker B, Kouam C, Paquette K, Jarreau P, Makarious MB, Moore A, Hong S, Vitale D, Shah S, Monlong J, Pantazis CB, Asri M, Shafin K, Carnevali P, Marenco S, Auluck P, Mandal A, Miga KH, Rhie A, Reed X, Ding J, Cookson MR, Nalls M, Singleton A, Miller DE, Chaisson M, Timp W, Gibbs JR, Phillippy AM, Kolmogorov M, Jain M, Sedlazeck FJ, Paten B, Blauwendraat C | bioRxiv : the preprint server for biology | 39764002 | bioRxiv | 2024 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/39764002 |
| Identification of GGC Repeat Expansions in ZFHX3 Among Chilean Movement Disorder Patients. | Saffie-Awad P, Moller A, Daida K, Jerez PA, Chen Z, Anderson ZB, Isayan M, Paquette K, Gibson SB, Fulcher M, Miano-Burkhardt A, Malik L, Baker B, Jarreau P, Houlden H, Ryten M, Gu B, Chaisson MJ, Miller DE, Chaná-Cuevas P, Blauwendraat C, Singleton AB, Billingsley KJ | medRxiv : the preprint server for health sciences | 40166539 | medRxiv | 2025 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/40166539 |
| Identification of GGC Repeat Expansions in ZFHX3 among Chilean Movement Disorder Patients. | Saffie-Awad P, Moller A, Daida K, Alvarez Jerez P, Chen Z, Anderson ZB, Isayan M, Paquette K, Gibson SB, Fulcher M, Miano-Burkhardt A, Malik L, Baker B, Jarreau P, Houlden H, Ryten M, Gu B, Chaisson MJP, Miller DE, Chaná-Cuevas P, Blauwendraat C, Singleton AB, Billingsley KJ | Movement disorders : official journal of the Movement Disorder Society | 40459184 | Mov Disord | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40459184 |
| Pangenome discovery of missing autism variants. | Sui Y, Lin J, Noyes MD, Kwon Y, Wong I, Koundinya N, Harvey WT, Wu M, Hoekzema K, Munson KM, Garcia GH, Knuth J, Wertz J, Wang T, Hennick K, Karunakaran D, Polo Prieto RA, Meyer-Schuman R, Cherry F, Pehlivan D, Suter B, Gustafson JA, Miller DE, Human Pangenome Reference Consortium (HPRC), Berk-Rauch H, Nowakowski TJ, Chakravarti A, Zoghbi HY, Eichler EE | medRxiv : the preprint server for health sciences | 40778144 | medRxiv | 2025 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/40778144 |
| Splice-modulating antisense oligonucleotides targeting a pathogenic intronic variant in adult polyglucosan body disease correct mis-splicing and restore enzyme activity in patient cells. | Thomas R, Miyoshi E, Akman HO, Storz SHR, Goffena J, Pytte J, Miller DE, Skourti-Stathaki K, Crooke ST | Nucleic acids research | 40671519 | Nucleic Acids Res | 2025 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/40671519 |
| Combined approaches, including long-read sequencing, address the diagnostic challenge of HYDIN in primary ciliary dyskinesia. | Fleming A, Galey M, Briggs L, Edwards M, Hogg C, John S, Wilkinson S, Quinn E, Rai R, Burgoyne T, Rogers A, Patel MP, Griffin P, Muller S, Carr SB, Loebinger MR, Lucas JS, Shah A, Jose R, Mitchison HM, Shoemark A, Miller DE, Morris-Rosendahl DJ | European journal of human genetics : EJHG | 38605126 | Eur J Hum Genet | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38605126 |
| Applications of long-read sequencing to Mendelian genetics. | Mastrorosa FK, Miller DE, Eichler EE | Genome medicine | 37316925 | Genome Med | 2023 Jun 14 | https://www.ncbi.nlm.nih.gov/pubmed/37316925 |
| A distant global control region is essential for normal expression of anterior HOXA genes during mouse and human craniofacial development. | Wilderman A, D'haene E, Baetens M, Yankee TN, Winchester EW, Glidden N, Roets E, Van Dorpe J, Janssens S, Miller DE, Galey M, Brown KM, Stottmann RW, Vergult S, Weaver KN, Brugmann SA, Cox TC, Cotney J | Nature communications | 38167838 | Nat Commun | 2024 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/38167838 |
| Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson Z, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | medRxiv : the preprint server for health sciences | 38496498 | medRxiv | 2024 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/38496498 |
| Beyond the exome: what's next in diagnostic testing for Mendelian conditions. | Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A, Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE | ArXiv | 36713248 | ArXiv | 2023 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/36713248 |
| Congenital pleuropulmonary blastoma in a newborn with a variant of uncertain significance in DICER1 evaluated by RNA-sequencing. | Lyle ANJ, Ohlsen TJD, Miller DE, Brown G, Waligorski N, Stark R, Taylor MR, Puia-Dumitrescu M | Maternal health, neonatology and perinatology | 36922881 | Matern Health Neonatol Perinatol | 2023 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/36922881 |
| Panels, Exomes, Genomes, and More-Finding the Best Path Through the Diagnostic Odyssey. | Lenahan AL, Squire AE, Miller DE | Pediatric clinics of North America | 37704349 | Pediatr Clin North Am | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37704349 |
| Long-read DNA sequencing resolves a rare case of alloimmune hemolysis mimicking autoimmune hemolysis. | Chao HX, Ma T, Hegerova L, Nester T, Sen N, Er L, Harris S, Lockwood T, Buchan JG, Lannert KW, Gasper J, Goffena J, Zalusky MPG, Storz SHR, Montemayor-Garcia C, Pagano MB, Johnsen JM, Panch SR, Miller DE | Transfusion | 40959943 | Transfusion | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40959943 |
| High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. | Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SHR, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CRDR), Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE | Genome research | 39358015 | Genome Res | 2024 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/39358015 |
| Phenotypes and ontogeny of senescent hepatic stellate cells in metabolic dysfunction-associated steatohepatitis. | Yashaswini CN, Qin T, Bhattacharya D, Amor C, Lowe S, Lujambio A, Wang S, Friedman SL | Journal of hepatology | 38508241 | J Hepatol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38508241 |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Research square | 37841853 | Res Sq | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37841853 |
| Senolytic CAR T cells reverse aging-associated defects in intestinal regeneration and fitness. | Eskiocak O, Chowdhury S, Shah V, Nnuji-John E, Chung C, Boyer JA, Harris AS, Habel J, Sadelain M, Beyaz S, Amor C | bioRxiv : the preprint server for biology | 38529506 | bioRxiv | 2024 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/38529506 |
| Aging and immunity: the age-old tango. | Fernández Maestre I, Harris AS, Amor C | Genes & development | 40436627 | Genes Dev | 2025 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/40436627 |
| Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. | Amor C, Fernández-Maestre I, Chowdhury S, Ho YJ, Nadella S, Graham C, Carrasco SE, Nnuji-John E, Feucht J, Hinterleitner C, Barthet VJA, Boyer JA, Mezzadra R, Wereski MG, Tuveson DA, Levine RL, Jones LW, Sadelain M, Lowe SW | Nature aging | 38267706 | Nat Aging | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38267706 |
| Spatially clustered type I interferon responses at injury borderzones. | Ninh VK, Calcagno DM, Yu JD, Zhang B, Taghdiri N, Sehgal R, Mesfin JM, Chen CJ, Kalhor K, Toomu A, Duran JM, Adler E, Hu J, Zhang K, Christman KL, Fu Z, Bintu B, King KR | Nature | 39198639 | Nature | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39198639 |
| Neutrophil-to-lymphocyte ratio as a predictor of surgical outcomes in head and neck cancer. | Kao DD, Ferrandino RM, Roof SA, Marshall DC, Khan MN, Chai RL, Park YA, Sigel KM | Head & neck | 37204760 | Head Neck | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37204760 |
| Effects of trauma history on cancer-related screening, diagnosis, and treatment. | Marshall DC, Carney LM, Hsieh K, Dickstein DR, Downes M, Chaudhari A, McVorran S, Montgomery GH, Schnur JB | The Lancet. Oncology | 37922933 | Lancet Oncol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37922933 |
| Trauma-Informed Radiation Therapy: Implementation and Evaluation of a Sensitive Practice Tool for Female Patients Undergoing Radiotherapy for Breast Cancer. | Marshall D, Green S, Jones BM, Starrs C, Montgomery GH, Minassian K, Wunder B, Force J, Schnur JB | Journal of the American College of Radiology : JACR | 36126825 | J Am Coll Radiol | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36126825 |
| Associations between pharmaceutical industry payments to physicians and prescription of PARP inhibitors in the United States. | Murayama A, Marshall DC | Gynecologic oncology | 38147713 | Gynecol Oncol | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38147713 |
| Effect of treatment interruptions on overall survival in patients with triple-negative breast cancer. | Chow R, Hasan S, Choi JI, Fox J, Chhabra AM, Marshall DC, Bakst RL, Simone CB 2nd | Journal of the National Cancer Institute | 37399094 | J Natl Cancer Inst | 2023 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/37399094 |
| Evaluation of AI-based auto-contouring tools in radiotherapy: A single-institution study. | Wang T, Tam J, Chum T, Tai C, Marshall DC, Buckstein M, Liu J, Green S, Stewart RD, Liu T, Chao M | Journal of applied clinical medical physics | 39837647 | J Appl Clin Med Phys | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39837647 |
| Industry-Sponsored Research Funding to Urologists in the United States Between 2014 and 2022. | Murayama A, Nguyen DD, Nguyen AV, Murad L, Cheng A, Elterman DS, Kulkarni GS, Bhojani N, Satkunasivam R, Trinh QD, Marshall DC, Wallis CJD | Urology practice | 39454021 | Urol Pract | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39454021 |
| Sex-Based Bias in Artificial Intelligence-Based Segmentation Models in Clinical Oncology. | Doo FX, Naranjo WG, Kapouranis T, Thor M, Chao M, Yang X, Marshall DC | Clinical oncology (Royal College of Radiologists (Great Britain)) | 39874747 | Clin Oncol (R Coll Radiol) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39874747 |
| Gender-Affirming Surgery and Cancer: Considerations for Radiation Oncologists for Pelvic Radiation in Transfeminine Patients. | Smart AC, Liu KX, Domogauer JD, Rodriguez-Russo C, Jones B, Dickstein DR, Mancias JD, Shiloh RY, Wintner A, Zietman AL, Marshall DC, Dyer MA, Russo AL | International journal of radiation oncology, biology, physics | 37230432 | Int J Radiat Oncol Biol Phys | 2023 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/37230432 |
| Pharmaceutical industry payments and prescriptions of direct acting antiviral drugs for hepatitis C virus infection. | Murayama A, Sigel KM, Tarras ES, Marshall DC | Liver international : official journal of the International Association for the Study of the Liver | 39310996 | Liver Int | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39310996 |
| Association of radiation-induced normal tissue toxicity with a high genetic risk for rheumatoid arthritis. | McWilliam A, Marshall D, Kerns SL, Barnett GC, Vega A, Kapouranis T, Aguado Barrera ME, Avuzzi B, Azria D, Chang-Claude J, Choudhury A, Coedo Costa C, Dunning A, Farcy-Jacquet MP, Faivre-Finn C, Gutiérrez-Enríquez S, Fuentes-Ríos O, Gómez Caamaño A, Lambrecht M, López Pleguezuelos C, Rancati T, Rattay T, de Ruysscher D, Seibold P, Sperk E, Talbot C, Webb A, Veldeman L, Rosenstein BS, West CML, REQUITE Consortium | Journal of the National Cancer Institute | 39761002 | J Natl Cancer Inst | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/39761002 |
| Female erectile tissues and sexual dysfunction after pelvic radiotherapy: A scoping review. | Marshall DC, Tarras ES, Ali A, Bloom J, Torres MA, Kahn JM | CA: a cancer journal for clinicians | 35298025 | CA Cancer J Clin | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35298025 |
| A qualitative analysis of female patient perspectives on physician communication regarding sexual dysfunction associated with pelvic radiotherapy. | Morgan O, Schnur J, Caban-Martinez AJ, Duenas-Lopez M, Huang M, Portelance L, Elkhadem A, Marshall DC | The journal of sexual medicine | 37037772 | J Sex Med | 2023 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/37037772 |
| Cuban American Perspectives on Sexual Dysfunction Following Pelvic Radiotherapy: A Qualitative Study. | Duenas-Lopez M, Morgan O, Marshall DC, Carney L, Caban-Martinez A, Huang M, Portelance L, Schnur J | Sexuality and disability | 38948491 | Sex Disabil | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38948491 |
| Prophylactic feeding tube placement for squamous cell carcinoma of the head and neck. | Kao DD, Ferrandino RM, Bauml JM, Marshall DC, Bakst R, Roof S, Park YA, Sigel KM | Oral oncology | 36326521 | Oral Oncol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36326521 |
| Advancing the evaluation of radiation-induced vaginal toxicity using ultrasound radiomics: Phantom validation and pilot clinical study. | Wang J, Shelton J, Zhou B, Marshall DC, Joshi H, Yoshida EJ, Yang X, Liu T | Medical physics | 40344179 | Med Phys | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40344179 |
| Dose and fractionation regimen for brachytherapy boost in cervical cancer in the US. | Hsieh K, Bloom JR, Dickstein DR, Hsieh C, Marshall D, Ghiassi-Nejad Z, Raince J, Lymberis S, Chadha M, Gupta V | Gynecologic oncology | 38052109 | Gynecol Oncol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38052109 |
| Systematic Review of Comparisons Between Plastic and Silicone Dilators: Revealing a Knowledge Gap. | Morgan O, Lopez MD, Martinez AJC, Marshall DC, Schnur JB | Sexual medicine reviews | 36030181 | Sex Med Rev | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36030181 |
| Sexual health and treatment-related sexual dysfunction in sexual and gender minorities with prostate cancer. | Dickstein DR, Edwards CR, Lehrer EJ, Tarras ES, Gallitto M, Sfakianos J, Galsky MD, Stock R, Safer JD, Rosser BRS, Marshall DC | Nature reviews. Urology | 37217695 | Nat Rev Urol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37217695 |
| Breast and Pelvic Cancer Survivors' Preferences for Psychosexual Interventions to Address Sexual Health Concerns: A Qualitative Study. | Carney LM, Besculides M, Gorbenko K, Schnur JB, Munoz C, Lynch J, Feldman C, Montgomery GH, Gupta V, Green S, Ghiassi-Nejad Z, Goodman KA, Marshall DC | Psycho-oncology | 40500244 | Psychooncology | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40500244 |
| Association between rheumatoid arthritis and risk of radiotherapy toxicity: a systematic review. | Liebenberg N, McWilliam A, Kerns SL, Marshall DC, West CM | BMJ oncology | 39524982 | BMJ Oncol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39524982 |
| Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State. | Pitter KL, Grbovic-Huezo O, Joost S, Singhal A, Blum M, Wu K, Holm M, Ferrena A, Bhutkar A, Hudson A, Lecomte N, de Stanchina E, Chaligne R, Iacobuzio-Donahue CA, Pe'er D, Tammela T | Cancer research | 35952360 | Cancer Res | 2022 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/35952360 |
| CRISPR/dCas9-KRAB-Mediated Suppression of S100b Restores p53-Mediated Apoptosis in Melanoma Cells. | Roy Choudhury S, Heflin B, Taylor E, Koss B, Avaritt NL, Tackett AJ | Cells | 36899866 | Cells | 2023 Feb 24 | https://www.ncbi.nlm.nih.gov/pubmed/36899866 |
| Enhancer-activated RET confers protection against oxidative stress to KMT2A-rearranged acute myeloid leukemia. | Frett B, Stephens KE, Koss B, Melnyk S, Farrar J, Saha D, Roy Choudhury S | Cancer science | 38226414 | Cancer Sci | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38226414 |
| Chemical inhibition of DNA-PKcs impairs the activation and cytotoxicity of CD4(+) helper and CD8(+) effector T cells. | Azevedo-Pouly AC, Appell LE, Burdine L, Rogers LJ, Morehead LC, Fil D, Barker M, Rainwater RR, Waldrip ZJ, Koss B, Burdine MS | Immunology and cell biology | 37149747 | Immunol Cell Biol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37149747 |
| EZH2 loss during metabolic stress drives restoration of MHC class I machinery in melanoma. | Edmondson JL, Reed MR, Fil D, Heflin B, McKinnon A, Bauer MA, Morehead LC, Avaritt NL, Phillips M, Taverna SD, Tackett AJ, Koss B | iScience | 40546964 | iScience | 2025 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/40546964 |
| Evolved histone tail regulates 53BP1 recruitment at damaged chromatin. | Kelliher JL, Folkerts ML, Shen KV, Song W, Tengler K, Stiefel CM, Lee SO, Dray E, Zhao W, Koss B, Pannunzio NR, Leung JW | Nature communications | 38821984 | Nat Commun | 2024 May 31 | https://www.ncbi.nlm.nih.gov/pubmed/38821984 |
| CAR-T Therapies in Solid Tumors: Opportunities and Challenges. | Guzman G, Reed MR, Bielamowicz K, Koss B, Rodriguez A | Current oncology reports | 36853475 | Curr Oncol Rep | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36853475 |
| Resveratrol induces major histocompatibility complex class I antigen presentation in a STING-dependent and independent manner in melanoma. | Morehead LC, Koss B, Fil D, Heflin B, Garg S, Wallis KF, Tackett AJ, Miousse IR | Molecular immunology | 37837954 | Mol Immunol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37837954 |
| Portraying emotions at their unfolding: a multilayered approach for probing dynamics of neural networks. | Raz G, Winetraub Y, Jacob Y, Kinreich S, Maron-Katz A, Shaham G, Podlipsky I, Gilam G, Soreq E, Hendler T | NeuroImage | 22285693 | Neuroimage | 2012 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/22285693 |
| Synchrony and specificity in the maternal and the paternal brain: relations to oxytocin and vasopressin. | Atzil S, Hendler T, Zagoory-Sharon O, Winetraub Y, Feldman R | Journal of the American Academy of Child and Adolescent Psychiatry | 22840551 | J Am Acad Child Adolesc Psychiatry | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22840551 |
| In Vivo Molecular Optical Coherence Tomography of Lymphatic Vessel Endothelial Hyaluronan Receptors. | Si P, Sen D, Dutta R, Yousefi S, Dalal R, Winetraub Y, Liba O, de la Zerda A | Scientific reports | 28439123 | Sci Rep | 2017 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/28439123 |
| Real-Time Detection of Circulating Tumor Cells in Living Animals Using Functionalized Large Gold Nanorods. | Dutta R, Liba O, SoRelle ED, Winetraub Y, Ramani VC, Jeffrey SS, Sledge GW, de la Zerda A | Nano letters | 30895796 | Nano Lett | 2019 Apr 10 | https://www.ncbi.nlm.nih.gov/pubmed/30895796 |
| Noninvasive virtual biopsy using micro-registered optical coherence tomography (OCT) in human subjects. | Winetraub Y, Van Vleck A, Yuan E, Terem I, Zhao J, Yu C, Chan W, Do H, Shevidi S, Mao M, Yu J, Hong M, Blankenberg E, Rieger KE, Chu S, Aasi S, Sarin KY, de la Zerda A | Science advances | 38598626 | Sci Adv | 2024 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/38598626 |
| Gold Nanoprisms as Optical Coherence Tomography Contrast Agents in the Second Near-Infrared Window for Enhanced Angiography in Live Animals. | Si P, Yuan E, Liba O, Winetraub Y, Yousefi S, SoRelle ED, Yecies DW, Dutta R, de la Zerda A | ACS nano | 30422624 | ACS Nano | 2018 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/30422624 |
| Intravital 3D visualization and segmentation of murine neural networks at micron resolution. | Lautman Z, Winetraub Y, Blacher E, Yu C, Terem I, Chibukhchyan A, Marshel JH, de la Zerda A | Scientific reports | 35907928 | Sci Rep | 2022 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/35907928 |
| High-fidelity, high-spatial-resolution diffusion magnetic resonance imaging of ex vivo whole human brain at ultra-high gradient strength with structured low-rank echo-planar imaging ghost correction. | Ramos-Llordén G, Lobos RA, Kim TH, Tian Q, Witzel T, Lee HH, Scholz A, Keil B, Yendiki A, Bilgiç B, Haldar JP, Huang SY | NMR in biomedicine | 36106429 | NMR Biomed | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36106429 |
| The influence of axonal beading and undulation on axonal diameter mapping. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | bioRxiv : the preprint server for biology | 37131702 | bioRxiv | 2023 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/37131702 |
| Romer-EPTI: Rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale diffusion MRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | Magnetic resonance in medicine | 39552568 | Magn Reson Med | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39552568 |
| In vivo mapping of cellular resolution neuropathology in brain ischemia with diffusion MRI. | Wu D, Lee HH, Ba R, Turnbill V, Wang X, Luo Y, Walczak P, Fieremans E, Novikov DS, Martin LJ, Northington FJ, Zhang J | Science advances | 39018390 | Sci Adv | 2024 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/39018390 |
| In vivo human neurite exchange imaging (NEXI) at 500 mT/m diffusion gradients. | Chan KS, Ma Y, Lee H, Marques JP, Olesen J, Coelho S, Novikov DS, Jespersen S, Huang SY, Lee HH | bioRxiv : the preprint server for biology | 39763747 | bioRxiv | 2024 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/39763747 |
| In vivo cortical microstructure mapping using high-gradient diffusion MRI accounting for intercompartmental water exchange effects. | Dong T, Lee HH, Zang H, Lee H, Tian Q, Wan L, Fan Q, Huang S | NeuroImage | 40349743 | Neuroimage | 2025 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/40349743 |
| In vivo human neurite exchange time imaging at 500 mT/m diffusion gradients: Neurite exchange time imaging on Connectome 2.0. | Chan KS, Ma Y, Lee H, Marques JP, Olesen JL, Coelho S, Novikov DS, Jespersen SN, Huang SY, Lee HH | Imaging neuroscience (Cambridge, Mass.) | 40726825 | Imaging Neurosci (Camb) | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40726825 |
| Visualizing cortical laminar architecture in the living human brain using next-generation ultra-high-gradient diffusion MRI. | Huang S, Lee H, Ma Y, Chan KS, Krijnen E, Eskandarian L, Bhatt A, Gerold J, Mahmutovic M, Puonti O, Zeng X, Binder LJD, Fischl B, Keil B, Ramos-Llordén G, Klawiter E, Lee HH | Research square | 40585214 | Res Sq | 2025 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/40585214 |
| DIMOND: DIffusion Model OptimizatioN with Deep Learning. | Li Z, Li Z, Bilgic B, Lee HH, Ying K, Huang SY, Liao H, Tian Q | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 38634608 | Adv Sci (Weinh) | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38634608 |
| Age-related alterations in human cortical microstructure across the lifespan: Insights from high-gradient diffusion MRI. | Lee H, Lee HH, Ma Y, Eskandarian L, Gaudet K, Tian Q, Krijnen EA, Russo AW, Salat DH, Klawiter EC, Huang SY | Aging cell | 39118344 | Aging Cell | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39118344 |
| The effects of axonal beading and undulation on axonal diameter estimation from diffusion MRI: Insights from simulations in human axons segmented from three-dimensional electron microscopy. | Lee HH, Tian Q, Sheft M, Coronado-Leija R, Ramos-Llorden G, Abdollahzadeh A, Fieremans E, Novikov DS, Huang SY | NMR in biomedicine | 38168082 | NMR Biomed | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38168082 |
| Scattering approach to diffusion quantifies axonal damage in brain injury. | Abdollahzadeh A, Coronado-Leija R, Lee HH, Sierra A, Fieremans E, Novikov DS | ArXiv | 39975429 | ArXiv | 2025 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/39975429 |
| Longitudinal changes in cortical cell body and neurite density in people with multiple sclerosis. | Krijnen EA, Lee H, Ma Y, Lee HH, Schoonheim MM, Klawiter EC, Huang SY | Neuroscience | 40691883 | Neuroscience | 2025 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/40691883 |
| Ultra-high gradient connectomics and microstructure MRI scanner for imaging of human brain circuits across scales. | Ramos-Llordén G, Lee HH, Davids M, Dietz P, Krug A, Kirsch JE, Mahmutovic M, Müller A, Ma Y, Lee H, Maffei C, Yendiki A, Bilgic B, Park DJ, Tian Q, Clifford B, Lo WC, Stocker S, Fischer J, Ruyters G, Roesler M, Potthast A, Benner T, Rummert E, Schuster R, Basser PJ, Witzel T, Wald LL, Rosen BR, Keil B, Huang SY | Nature biomedical engineering | 40670720 | Nat Biomed Eng | 2025 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/40670720 |
| Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. | Fan Q, Eichner C, Afzali M, Mueller L, Tax CMW, Davids M, Mahmutovic M, Keil B, Bilgic B, Setsompop K, Lee HH, Tian Q, Maffei C, Ramos-Llordén G, Nummenmaa A, Witzel T, Yendiki A, Song YQ, Huang CC, Lin CP, Weiskopf N, Anwander A, Jones DK, Rosen BR, Wald LL, Huang SY | NeuroImage | 35217204 | Neuroimage | 2022 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/35217204 |
| Perivascular space diffusivity and brain microstructural measures are associated with circadian time and sleep quality. | Brendstrup-Brix K, Ulv Larsen SM, Lee HH, Knudsen GM | Journal of sleep research | 38676409 | J Sleep Res | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38676409 |
| Revealing membrane integrity and cell size from diffusion kurtosis time dependence. | Lee HH, Novikov DS, Fieremans E, Huang SY | Magnetic resonance in medicine | 39473219 | Magn Reson Med | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39473219 |
| Romer-EPTI: rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale dMRI and microstructure imaging. | Dong Z, Reese TG, Lee HH, Huang SY, Polimeni JR, Wald LL, Wang F | bioRxiv : the preprint server for biology | 38352481 | bioRxiv | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38352481 |
| Eddy current-induced artifact correction in high b-value ex vivo human brain diffusion MRI with dynamic field monitoring. | Ramos-Llordén G, Park DJ, Kirsch JE, Scholz A, Keil B, Maffei C, Lee HH, Bilgic B, Edlow BL, Mekkaoui C, Yendiki A, Witzel T, Huang SY | Magnetic resonance in medicine | 37753621 | Magn Reson Med | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37753621 |
| Quantifying axonal features of human superficial white matter from three-dimensional multibeam serial electron microscopy data assisted by deep learning. | Tian Q, Ngamsombat C, Lee HH, Berger DR, Wu Y, Fan Q, Bilgic B, Li Z, Novikov DS, Fieremans E, Rosen BR, Lichtman JW, Huang SY | NeuroImage | 40222502 | Neuroimage | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40222502 |
| Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. | Huang SY, Witzel T, Keil B, Scholz A, Davids M, Dietz P, Rummert E, Ramb R, Kirsch JE, Yendiki A, Fan Q, Tian Q, Ramos-Llordén G, Lee HH, Nummenmaa A, Bilgic B, Setsompop K, Wang F, Avram AV, Komlosh M, Benjamini D, Magdoom KN, Pathak S, Schneider W, Novikov DS, Fieremans E, Tounekti S, Mekkaoui C, Augustinack J, Berger D, Shapson-Coe A, Lichtman J, Basser PJ, Wald LL, Rosen BR | NeuroImage | 34464739 | Neuroimage | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34464739 |
| Geospatial Assessment of Racial/Ethnic Composition, Social Vulnerability, and Lead Water Service Lines in New York City. | Nigra AE, Lieberman-Cribbin W, Bostick BC, Chillrud SN, Carrión D | Environmental health perspectives | 37646509 | Environ Health Perspect | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37646509 |
| Regional and racial/ethnic inequalities in public drinking water fluoride concentrations across the US. | Hefferon R, Goin DE, Sarnat JA, Nigra AE | Journal of exposure science & environmental epidemiology | 37391608 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37391608 |
| Sociodemographic inequalities in uranium and other metals in community water systems across the USA, 2006-11: a cross-sectional study. | Ravalli F, Yu Y, Bostick BC, Chillrud SN, Schilling K, Basu A, Navas-Acien A, Nigra AE | The Lancet. Planetary health | 35397220 | Lancet Planet Health | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35397220 |
| Contribution of arsenic and uranium in private wells and community water systems to urinary biomarkers in US adults: The Strong Heart Study and the Multi-Ethnic Study of Atherosclerosis. | Spaur M, Glabonjat RA, Schilling K, Lombard MA, Galvez-Fernandez M, Lieberman-Cribbin W, Hayek C, Ilievski V, Balac O, Izuchukwu C, Patterson K, Basu A, Bostick BC, Chen Q, Sanchez T, Navas-Acien A, Nigra AE | Journal of exposure science & environmental epidemiology | 37558699 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37558699 |
| Nationwide geospatial analysis of county racial and ethnic composition and public drinking water arsenic and uranium. | Martinez-Morata I, Bostick BC, Conroy-Ben O, Duncan DT, Jones MR, Spaur M, Patterson KP, Prins SJ, Navas-Acien A, Nigra AE | Nature communications | 36460659 | Nat Commun | 2022 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/36460659 |
| Public drinking water contaminant estimates for birth cohorts in the Environmental Influences on Child Health Outcomes (ECHO) Cohort. | Bloomquist TR, Spaur M, Cerna-Turoff I, Kress AM, Burjak M, Kupsco A, Casey JA, Herbstman JB, Nigra AE | Journal of exposure science & environmental epidemiology | 39098852 | J Expo Sci Environ Epidemiol | 2024 Aug 4 | https://www.ncbi.nlm.nih.gov/pubmed/39098852 |
| US drinking water quality: exposure risk profiles for seven legacy and emerging contaminants. | Levin R, Villanueva CM, Beene D, Cradock AL, Donat-Vargas C, Lewis J, Martinez-Morata I, Minovi D, Nigra AE, Olson ED, Schaider LA, Ward MH, Deziel NC | Journal of exposure science & environmental epidemiology | 37739995 | J Expo Sci Environ Epidemiol | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37739995 |
| Socioeconomic vulnerability and public water arsenic concentrations across the US. | Nigra AE, Cazacu-De Luca A, Navas-Acien A | Environmental pollution (Barking, Essex : 1987) | 36084737 | Environ Pollut | 2022 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/36084737 |
| Impact of lowering the US maximum contaminant level on arsenic exposure: Differences by race, region, and water arsenic in NHANES 2003-2014. | Spaur M, Bostick BC, Chillrud SN, Factor-Litvak P, Navas-Acien A, Nigra AE | Environmental pollution (Barking, Essex : 1987) | 37331581 | Environ Pollut | 2023 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/37331581 |
| Association of Water Arsenic With Incident Diabetes in U.S. Adults: The Multi-Ethnic Study of Atherosclerosis and the Strong Heart Study. | Spaur M, Galvez-Fernandez M, Chen Q, Lombard MA, Bostick BC, Factor-Litvak P, Fretts AM, Shea SJ, Navas-Acien A, Nigra AE | Diabetes care | 38656975 | Diabetes Care | 2024 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/38656975 |
| Cross-sectional associations between drinking water arsenic and urinary inorganic arsenic in the United States: NHANES 2003-2014. | Spaur M, Lombard MA, Ayotte JD, Bostick BC, Chillrud SN, Navas-Acien A, Nigra AE | Environmental research | 36963713 | Environ Res | 2023 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/36963713 |
| Uranium exposure and kidney tubule biomarkers in the Multi-Ethnic Study of Atherosclerosis (MESA). | Anderson WA, Domingo-Relloso A, Galvez-Fernandez M, Schilling K, Glabonjat RA, Basu A, Nigra AE, Gutierrez OM, Scherzer R, Goldsmith J, Sarnak MJ, Bonventre JV, Kimmel PL, Vasan RS, Ix JH, Shlipak MG, Navas-Acien A | Environmental research | 39922262 | Environ Res | 2025 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/39922262 |
| Public Water Arsenic and Birth Outcomes in the Environmental Influences on Child Health Outcomes Cohort. | Nigra AE, Bloomquist TR, Rajeev T, Burjak M, Casey JA, Goin DE, Herbstman JB, Ornelas Van Horne Y, Wylie BJ, Cerna-Turoff I, Braun JM, McArthur KL, Karagas MR, Ames JL, Sherris AR, Bulka CM, Padula AM, Howe CG, Fry RC, Eaves LA, Breton CV, Cassidy-Bushrow AE, Lewis J, MacKenzie D, Beene D, Farzan SF, Sathyanarayana S, Hipwell AE, Morello-Frosch R, Snyder BM, Hartert TV, Elliott AJ, O'Connor TG, Kress AM, ECHO Cohort Consortium | JAMA network open | 40522663 | JAMA Netw Open | 2025 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/40522663 |
| Letter to the editor regarding "Translation of focused ultrasound for blood-brain barrier opening in glioma". | Price RJ, Bullock TNJ, Sheybani ND | Journal of controlled release : official journal of the Controlled Release Society | 35780955 | J Control Release | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35780955 |
| Barriers to immune cell infiltration in tumors. | Melssen MM, Sheybani ND, Leick KM, Slingluff CL Jr | Journal for immunotherapy of cancer | 37072352 | J Immunother Cancer | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37072352 |
| Solid Tumor Treatment via Augmentation of Bioactive C6 Ceramide Levels with Thermally Ablative Focused Ultrasound. | Thim EA, Fox T, Deering T, Vass LR, Sheybani ND, Kester M, Price RJ | bioRxiv : the preprint server for biology | 36993445 | bioRxiv | 2023 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/36993445 |
| MR Imaging-Guided Focused Ultrasound for Breast Tumors. | DeWitt M, Demir ZEF, Sherlock T, Brenin DR, Sheybani ND | Magnetic resonance imaging clinics of North America | 39322350 | Magn Reson Imaging Clin N Am | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39322350 |
| Profiling of the immune landscape in murine glioblastoma following blood brain/tumor barrier disruption with MR image-guided focused ultrasound. | Sheybani ND, Witter AR, Garrison WJ, Miller GW, Price RJ, Bullock TNJ | Journal of neuro-oncology | 34734364 | J Neurooncol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34734364 |
| Focused ultrasound for the treatment of glioblastoma. | Roberts JW, Powlovich L, Sheybani N, LeBlang S | Journal of neuro-oncology | 35267132 | J Neurooncol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35267132 |
| Applications of focused ultrasound-mediated blood-brain barrier opening. | Gorick CM, Breza VR, Nowak KM, Cheng VWT, Fisher DG, Debski AC, Hoch MR, Demir ZEF, Tran NM, Schwartz MR, Sheybani ND, Price RJ | Advanced drug delivery reviews | 36272635 | Adv Drug Deliv Rev | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36272635 |
| Therapeutic Ultrasound for Multimodal Cancer Treatment: A Spotlight on Breast Cancer. | Demir ZEF, Sheybani ND | Annual review of biomedical engineering | 39971377 | Annu Rev Biomed Eng | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/39971377 |
| CAR-T cell therapy in brain malignancies: obstacles in the face of cellular trafficking and persistence. | Yaacoub S, Vannoy E, Maslova S, Haffey A, Khorsandi K, Sheybani N, Haydar D | Frontiers in immunology | 40612954 | Front Immunol | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40612954 |
| Rapid Interactions of Widespread Brain Networks Characterize Semantic Cognition. | Aboud KS, Nguyen TQ, Del Tufo SN, Chang C, Zald DH, Key AP, Price GR, Landman BA, Cutting LE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 36384679 | J Neurosci | 2023 Jan 4 | https://www.ncbi.nlm.nih.gov/pubmed/36384679 |
| Regenerative Potential of Mandibular Condyle Cartilage and Bone Cells Compared to Costal Cartilage Cells When Seeded in Novel Gelatin Based Hydrogels. | Chin AR, Taboas JM, Almarza AJ | Annals of biomedical engineering | 33155145 | Ann Biomed Eng | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33155145 |
| SIV proviruses seeded later in infection are harbored in short-lived CD4(+) T cells. | Sambaturu N, Fray EJ, Hariharan V, Wu F, Zitzmann C, Simonetti FR, Barouch DH, Siliciano JD, Siliciano RF, Ribeiro RM, Perelson AS, Molina-París C, Leitner T | Cell reports | 40327506 | Cell Rep | 2025 May 27 | https://www.ncbi.nlm.nih.gov/pubmed/40327506 |
| Last in first out: SIV proviruses seeded later in infection are harbored in short-lived CD4(+) T cells. | Sambaturu N, Fray EJ, Wu F, Zitzmann C, Simonetti FR, Barouch DH, Siliciano JD, Siliciano RF, Ribeiro RM, Perelson AS, Molina-París C, Leitner T | bioRxiv : the preprint server for biology | 37961482 | bioRxiv | 2023 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/37961482 |
| Bispecific antibodies promote natural killer cell-mediated elimination of HIV-1 reservoir cells. | Board NL, Yuan Z, Wu F, Moskovljevic M, Ravi M, Sengupta S, Mun SS, Simonetti FR, Lai J, Tebas P, Lynn K, Hoh R, Deeks SG, Siliciano JD, Montaner LJ, Siliciano RF | Nature immunology | 38278966 | Nat Immunol | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38278966 |
| Proviral location affects cognate peptide-induced virus production and immune recognition of HIV-1-infected T cell clones. | Dragoni F, Kwaa AK, Traut CC, Veenhuis RT, Woldemeskel BA, Camilo-Contreras A, Raymond HE, Dykema AG, Scully EP, Rosecrans AM, Smith KN, Bushman FD, Simonetti FR, Blankson JN | The Journal of clinical investigation | 37698927 | J Clin Invest | 2023 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/37698927 |
| Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants. | Fray EJ, Wu F, Simonetti FR, Zitzmann C, Sambaturu N, Molina-Paris C, Bender AM, Liu PT, Ventura JD, Wiseman RW, O'Connor DH, Geleziunas R, Leitner T, Ribeiro RM, Perelson AS, Barouch DH, Siliciano JD, Siliciano RF | Cell host & microbe | 36809762 | Cell Host Microbe | 2023 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/36809762 |
| Clonally expanded HIV-1 proviruses with 5'-leader defects can give rise to nonsuppressible residual viremia. | White JA, Wu F, Yasin S, Moskovljevic M, Varriale J, Dragoni F, Camilo-Contreras A, Duan J, Zheng MY, Tadzong NF, Patel HB, Quiambao JMC, Rhodehouse K, Zhang H, Lai J, Beg SA, Delannoy M, Kilcrease C, Hoffmann CJ, Poulin S, Chano F, Tremblay C, Cherian J, Barditch-Crovo P, Chida N, Moore RD, Summers MF, Siliciano RF, Siliciano JD, Simonetti FR | The Journal of clinical investigation | 36602866 | J Clin Invest | 2023 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/36602866 |
| The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy. | McMyn NF, Varriale J, Fray EJ, Zitzmann C, MacLeod H, Lai J, Singhal A, Moskovljevic M, Garcia MA, Lopez BM, Hariharan V, Rhodehouse K, Lynn K, Tebas P, Mounzer K, Montaner LJ, Benko E, Kovacs C, Hoh R, Simonetti FR, Laird GM, Deeks SG, Ribeiro RM, Perelson AS, Siliciano RF, Siliciano JM | The Journal of clinical investigation | 37463049 | J Clin Invest | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37463049 |
| Cognate antigen engagement induces HIV-1 expression in latently infected CD4(+) T cells from people on long-term antiretroviral therapy. | Moskovljevic M, Dragoni F, Board NL, Wu F, Lai J, Zhang H, White JR, Hoh R, Lynn K, Tebas P, Mounzer K, Deeks SG, Montaner LJ, Siliciano JD, Siliciano RF, Simonetti FR | Immunity | 39612916 | Immunity | 2024 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/39612916 |
| Learning from Persistent Viremia: Mechanisms and Implications for Clinical Care and HIV-1 Cure. | Wu F, Simonetti FR | Current HIV/AIDS reports | 37955826 | Curr HIV/AIDS Rep | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37955826 |
| Proviruses in CD4(+) T cells reactive to autologous antigens contribute to nonsuppressible HIV-1 viremia. | Wu F, Moskovljevic M, Dragoni F, Jayaraman S, Board NL, Camilo-Contreras A, Bernal S, Hariharan V, Zhang H, Lai J, Singhal A, Poulin S, Chano F, Chamberland A, Tremblay C, Zoltick M, Hoffmann CJ, Jones JL, Larman HB, Montaner LJ, Siliciano JD, Siliciano RF, Simonetti FR | Science translational medicine | 40802737 | Sci Transl Med | 2025 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/40802737 |
| Long-term function, body composition and cardiometabolic health in midlife former athletes: a scoping review. | Street JH, Boos ZP, Fial A, Lennon SL, Smith CS, Creasy SA, Hunter SK, Farquhar WB, Capin JJ | BMJ open sport & exercise medicine | 37920279 | BMJ Open Sport Exerc Med | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37920279 |
| Midlife health crisis of former competitive athletes: dissecting their experiences via qualitative study. | Capin JJ, Wolf TL, Street JH, Smith CS, Lennon SL, Farquhar WB, Hunter SK, Piacentine LB | BMJ open sport & exercise medicine | 38736641 | BMJ Open Sport Exerc Med | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38736641 |
| Prolonged quadriceps latency during gait early after anterior cruciate ligament injury predicts radiographic knee osteoarthritis 6-years after anterior cruciate ligament reconstruction. | Ito N, Capin JJ, Arhos EK, Wellsandt E, Pohlig RT, Buchanan TS, Snyder-Mackler L | Clinical biomechanics (Bristol, Avon) | 38945068 | Clin Biomech (Bristol) | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38945068 |
| Activity levels across the intensity spectrum in athletes: a systematic review protocol. | Capin JJ, Ridgers ND, Street JH, Fial A, Tomkinson GR | BMJ open sport & exercise medicine | 39161555 | BMJ Open Sport Exerc Med | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39161555 |
| A caste differentiation mutant elucidates the evolution of socially parasitic ants. | Trible W, Chandra V, Lacy KD, Limón G, McKenzie SK, Olivos-Cisneros L, Arsenault SV, Kronauer DJC | Current biology : CB | 36858043 | Curr Biol | 2023 Mar 27 | https://www.ncbi.nlm.nih.gov/pubmed/36858043 |
| Enhanced Efficacy of Simultaneous PD-1 and PD-L1 Immune Checkpoint Blockade in High-Grade Serous Ovarian Cancer. | Wan C, Keany MP, Dong H, Al-Alem LF, Pandya UM, Lazo S, Boehnke K, Lynch KN, Xu R, Zarrella DT, Gu S, Cejas P, Lim K, Long HW, Elias KM, Horowitz NS, Feltmate CM, Muto MG, Worley MJ Jr, Berkowitz RS, Matulonis UA, Nucci MR, Crum CP, Rueda BR, Brown M, Liu XS, Hill SJ | Cancer research | 33158814 | Cancer Res | 2021 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/33158814 |
| Sialyl-Tn serves as a potential therapeutic target for ovarian cancer. | Al-Alem L, Prendergast JM, Clark J, Zarrella B, Zarrella DT, Hill SJ, Growdon WB, Pooladanda V, Spriggs DR, Cramer D, Elias KM, Nazer RI, Skates SJ, Behrens J, Dransfield DT, Rueda BR | Journal of ovarian research | 38566237 | J Ovarian Res | 2024 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/38566237 |
| The ORFIUS complex regulates ORC2 localization at replication origins. | Yang Z, Mogre S, He R, Berdan EL, Ho Sui SJ, Hill SJ | NAR cancer | 38288445 | NAR Cancer | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38288445 |
| Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1-AKT-p53 Interactions. | Lynch KN, Liu JF, Kesten N, Chow KH, Shetty A, He R, Afreen MF, Yuan L, Matulonis UA, Growdon WB, Muto MG, Horowitz NS, Feltmate CM, Worley MJ Jr, Berkowitz RS, Crum CP, Rueda BR, Hill SJ | Cancers | 34063609 | Cancers (Basel) | 2021 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/34063609 |
| Targeting Galectin 3 illuminates its contributions to the pathology of uterine serous carcinoma. | Matoba Y, Zarrella DT, Pooladanda V, Azimi Mohammadabadi M, Kim E, Kumar S, Xu M, Qin X, Ray LJ, Devins KM, Kumar R, Kononenko A, Eisenhauer E, Veillard IE, Yamagami W, Hill SJ, Sarosiek KA, Yeku OO, Spriggs DR, Rueda BR | British journal of cancer | 38438589 | Br J Cancer | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38438589 |
| Functional Profiling of p53 and RB Cell Cycle Regulatory Proficiency Suggests Mechanism-Driven Molecular Stratification in Endometrial Carcinoma. | Yang Z, Mogre S, Jun H, He R, Ghosh Chaudhary S, Bhattarai UR, Ho Sui SJ, Matulonis UA, Lazo S, Shetty A, Cameron A, Nguyen QD, Hill SJ | Cancer research communications | 39932274 | Cancer Res Commun | 2025 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/39932274 |
| Germline and Somatic Fumarate Hydratase Testing in Atypical Uterine Leiomyomata. | Kipnis LM, Breen KM, Koeller DR, Levine AS, Yang Z, Jun H, Tayob N, Stokes SM, Hayes CP, Ghazani AA, Hill SJ, Rana HQ | Cancer prevention research (Philadelphia, Pa.) | 38638033 | Cancer Prev Res (Phila) | 2024 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/38638033 |
| Parenting profiles of academic and racial socialization: Associations with academic engagement and academic self-beliefs of African American adolescents. | Metzger IW, Cooper SM, Griffin CB, Golden AR, Opara I, Ritchwood TD | Journal of school psychology | 32988462 | J Sch Psychol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32988462 |
| Feeling Invisible and Unheard: A Qualitative Exploration of Gendered-Racist Stereotypes Influence on Sexual Decision Making and Mistreatment of Black Teen Girls. | Opara I, Weser V, Sands B, Fernandes CF, Hussett-Richardson S, Hieftje K | Youth & society | 35812173 | Youth Soc | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35812173 |
| Measuring Intrapersonal Psychological Empowerment and Ethnic Identity: Highlighting Strengths of Urban Black Girls. | Opara I, Lardier DT Jr, Garcia-Reid P, Reid RJ | Youth & society | 35813075 | Youth Soc | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35813075 |
| Learning from community-based HIV prevention to inform control and mitigation of the COVID-19 pandemic. | Abrams JA, Rutledge J, Opara I | Preventive medicine | 36750159 | Prev Med | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36750159 |
| A mixed-methods assessment of off-duty police shootings in a media-curated database. | Asabor EN, Lett E, Mosely B, Boone CA, Sundaresan S, Wong TA, Majumder MS | Health services research | 37276031 | Health Serv Res | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37276031 |
| Racial/ethnic disparities in PM(2.5)-attributable cardiovascular mortality burden in the United States. | Ma Y, Zang E, Opara I, Lu Y, Krumholz HM, Chen K | Nature human behaviour | 37653149 | Nat Hum Behav | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37653149 |
| A Spatial Analysis of Alcohol Outlet Density Type, Abandoned Properties, and Police Calls on Aggravated Assault Rates in a Northeastern U.S. City. | Lardier DT, Opara I, Lin Y, Roach E, Herrera A, Garcia-Reid P, Reid RJ | Substance use & misuse | 34210249 | Subst Use Misuse | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34210249 |
| The brief sense of community scale: Testing dimensionality and measurement invariance by gender among Hispanic/Latinx youth. | Lardier DT Jr, Opara I, Cantu I, Garcia-Reid P, Reid RJ | Journal of community psychology | 33938003 | J Community Psychol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33938003 |
| Ethnic Identity as a Moderator Between HIV Knowledge, Viral Hepatitis Knowledge, and Psychological Antecedents Among Racial-Ethnic Minority Youth Living in an Urban Community. | Opara I, Lardier DT Jr, Durkee MI, Garcia-Reid P, Reid RJ | Journal of racial and ethnic health disparities | 34041704 | J Racial Ethn Health Disparities | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34041704 |
| The Association Between Racial Attitudes, Alcohol Use and Mood Disorders Among Black Adolescents. | Opara I, Lardier DT, Boyd D, Boateng ACO, Brawner BM | Journal of prevention (2022) | 36156761 | J Prev (2022) | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36156761 |
| Structural indicators of suicide: an exploration of state-level risk factors among Black and White people in the United States, 2015-2019. | Robertson RA, Standley CJ, Gunn JF 3rd, Opara I | Journal of public mental health | 36185543 | J Public Ment Health | 2022 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/36185543 |
| What happens when we ask? A phenomenological focus group on HIV prevention and sexual health education among emancipated foster care youth. | Opara I, Lizarraga A, Lardier DT, Herrera A, Garcia-Reid P, Reid RJ | Children and youth services review | 35910532 | Child Youth Serv Rev | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35910532 |
| Racial Differences in 1-Year Mortality after Hospitalization for Chronic Obstructive Pulmonary Disease in the United States. | Jain S, Priya A, Pekow P, Spitzer K, Walkey AJ, Opara I, Krumholz HM, Lindenauer PK | Annals of the American Thoracic Society | 37943953 | Ann Am Thorac Soc | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37943953 |
| Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 38463537 | Urban Rev | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38463537 |
| Young Adults at the National Epicenter of the COVID-19 Outbreak: Understanding the Impact and Future Challenges of Social Distancing on Mental Health Outcomes. | Malik S, Opara I, Lardier DT Jr, Younger J, Greene RN | International journal of environmental research and public health | 38248498 | Int J Environ Res Public Health | 2023 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/38248498 |
| Brief Parent-Child Substance Use Education Intervention for Black Families in Urban Cities in New Jersey: Protocol for a Formative Study Design. | Opara I, Pierre K, Cayo S, Aneni K, Mwai C, Hogue A, Becker S | JMIR research protocols | 38722676 | JMIR Res Protoc | 2024 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/38722676 |
| A Qualitative Exploration on Risk and Protective Factors of Substance Use Among Black Adolescent Girls. | Opara I, Brooks-Stephens JR, Aneni K, Asabor EN, Weerakoon SM, Duran-Becerra B | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 38748661 | J Clin Child Adolesc Psychol | 2024 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/38748661 |
| Teaching Note-#BlackGirlsMatter and the Social Work Curriculum: Integrating Intersectionality Within Social Work Education. | Opara I, Brown TL | Journal of social work education | 36874948 | J Soc Work Educ | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36874948 |
| Role of the Intersections of Gender, Race and Sexual Orientation in the Association between Substance Use Behaviors and Sexually Transmitted Infections in a National Sample of Adults with Recent Criminal Legal Involvement. | Harvey TD, Opara I, Wang EA | International journal of environmental research and public health | 35409785 | Int J Environ Res Public Health | 2022 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/35409785 |
| Symptoms of distress during the COVID-19 pandemic in the United States. | Okafor CN, Asare M, Bautista KJ, Opara I | American journal of health studies | 34335012 | Am J Health Stud | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34335012 |
| A latent profile analysis of psychological sense of community and ethnic identity among racial-ethnic minority young adults from the southwestern United States. | Lardier DT Jr, Opara I, Roach E | Journal of community psychology | 34402065 | J Community Psychol | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34402065 |
| Sociopolitical control as a mediator between ethnic identity and social support on 30-day drug use among black girls. | Opara I, Hill AV, Calhoun A, Francois M, Alves C, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 34533434 | J Ethn Subst Abuse | 2023 Jul-Sep | https://www.ncbi.nlm.nih.gov/pubmed/34533434 |
| Reframing Sexual Health for Black Girls and Women in HIV/STI Prevention Work: Highlighting the Role of Identity and Interpersonal Relationships. | Opara I, Abrams JA, Cross K, Amutah-Onukagha N | International journal of environmental research and public health | 34831855 | Int J Environ Res Public Health | 2021 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/34831855 |
| Alcohol Use Cravings as a Mediator Between Associated Risk Factors on Increased Alcohol Use among Youth Adults in New York During the COVID-19 Pandemic. | Opara I, Malik S, Lardier DT Jr, Gamble-George J, Kelly RJ, Okafor CN, Greene RN, Parisi D | Alcoholism treatment quarterly | 34898835 | Alcohol Treat Q | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34898835 |
| Correction: Schools' Neighborhoods and Characteristics: Implications for Standardized Academic Achievement in Passaic, NJ's Elementary, Middle and High Schools. | Opara I, Thorpe D, Lardier DT, Parisi D | The Urban review | 39474034 | Urban Rev | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39474034 |
| School Absenteeism and Neighborhood Deprivation and Threat: Utilizing the Child Opportunity Index to Assess for Neighborhood-Level Disparities in Passaic County, NJ. | Opara I, Thorpe D, Lardier DT Jr | Urban education | 39669403 | Urban Educ (Beverly Hills Calif) | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39669403 |
| Understanding Neighborhoods' Impact on Youth Substance Use and Mental Health Outcomes in Paterson, New Jersey: Protocol for a Community-Based Participatory Research Study. | Opara I, R Leonard N, Thorpe D, Kershaw T | JMIR research protocols | 34047712 | JMIR Res Protoc | 2021 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/34047712 |
| Associations between Parent-Child Communication on Sexual Health and Drug Use and Use of Drugs during Sex among Urban Black Youth. | Boyd DT, Opara I, Quinn CR, Waller B, Ramos SR, Duncan DT | International journal of environmental research and public health | 34068128 | Int J Environ Res Public Health | 2021 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/34068128 |
| Intrapersonal psychological empowerment profiles on ethnic identity, social support, and lifetime drug use among Hispanic adolescent girls. | Opara I, Lardier DT Jr, Fernandez Y, Garcia-Reid P, Reid RJ | Journal of ethnicity in substance abuse | 32787746 | J Ethn Subst Abuse | 2022 Jul-Sep | https://www.ncbi.nlm.nih.gov/pubmed/32787746 |
| Ethnic Identity, Empowerment, Social Support and Sexual Risk Behaviors Among Black Adolescent Girls: Examining Drug Use as a Mediator. | Opara I, Rivera Rodas EI, Garcia-Reid P, Reid RJ | Child & adolescent social work journal : C & A | 35462639 | Child Adolesc Social Work J | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35462639 |
| A Systematic Review on Sexual Health and Drug Use Prevention Interventions for Black Girls. | Opara I, Pierre K, Assan MA, Scheinfeld L, Alves C, Cross K, Lizarraga A, Brawner B | International journal of environmental research and public health | 35328864 | Int J Environ Res Public Health | 2022 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/35328864 |
| How Black Teen Girls Navigate Social Media to Form Romantic Relationships. | Weser VU, Opara I, Sands BE, Fernandes CF, Hieftje KD | Social media + society | 34858631 | Soc Media Soc | 2021 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/34858631 |
| Coping in the Time of COVID-19: Buffering Stressors With Coping Strategies. | Okafor CN, Bautista KJ, Asare M, Opara I | Journal of loss & trauma | 35173557 | J Loss Trauma | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35173557 |
| Effects of Brief Interventions on Internalizing Symptoms and Substance Use in Youth: A Systematic Review. | McDanal R, Parisi D, Opara I, Schleider JL | Clinical child and family psychology review | 34731373 | Clin Child Fam Psychol Rev | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34731373 |
| Increasing HIV/AIDS knowledge among urban ethnic minority youth: Findings from a community-based prevention intervention program. | Lardier DT Jr, Opara I, Reid RJ, Garcia-Reid P, Herrera A, Cantu I | Journal of HIV/AIDS & social services | 34177389 | J HIV AIDS Soc Serv | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34177389 |
| Psychological sense of community, community civic participation, and ethnic identity on social justice orientation and psychological empowerment between LGBQ and Non-LGBQ youth of color. | Lardier DT, Opara I, Brammer MK, Pinto SA, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 36855462 | J LGBT Youth | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36855462 |
| Black Adolescent Females' Perceptions of PrEP for HIV Risk Reduction. | Budge M, Opara I, Weser VU, Sands BE, Hieftje KD | Journal of the International Association of Providers of AIDS Care | 37853731 | J Int Assoc Provid AIDS Care | 2023 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/37853731 |
| Assessing the Prevalence Rates of Internalizing Symptomatology Among Multiracial Adolescents in the United States: A Systematic Review. | Henson-García M, Weerakoon SM, Duncan C, Choe T, Opara I, A Baker K, L Sterling K, Messiah SE | Child psychiatry and human development | 38042957 | Child Psychiatry Hum Dev | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38042957 |
| Power to the People: Measuring Social Media and Mass Media Impact for Promotion and Tenure in Social and Applied Sciences. | Metzger IW, Jernigan-Noesi M, Jones SCT, Turner EA, Saleem F, Jackson J, Anderson RE, Bartolomeo LA, Tineo P, Opara I | Higher education policy | 40401236 | High Educ Policy | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40401236 |
| Mental Health Burden among Black Adolescents: The Need for Better Assessment, Diagnosis and Treatment Engagement. | Opara I, Weissinger GM, Lardier DT Jr, Lanier Y, Carter S, Brawner BM | Social work in mental health | 34248423 | Soc Work Ment Health | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34248423 |
| Testing the Factor Structure of the Brief Sense of Community Scale among Black Girls and the Relationship with Ethnic Identity, Empowerment and Social Support. | Opara I, Lardier DT, Garcia-Reid P, Reid RJ | Children and youth services review | 34305217 | Child Youth Serv Rev | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34305217 |
| Intersectional Effects of Sexual Orientation Concealment, Internalized Homophobia, and Gender Expression on Sexual Identity and HIV Risk Among Sexual Minority Men of Color: A Path Analysis. | Ramos SR, Lardier DT Jr, Opara I, Turpin RE, Boyd DT, Gutierrez JI Jr, Williams CN, Nelson LE, Kershaw T | The Journal of the Association of Nurses in AIDS Care : JANAC | 34101701 | J Assoc Nurses AIDS Care | 2021 Jul-Aug 01 | https://www.ncbi.nlm.nih.gov/pubmed/34101701 |
| Examining the integrated model of the interpersonal-psychological theory of suicide and intersectionality theory among Black male adolescents. | Douglas RD, Alli JO, Gaylord-Harden N, Opara I, Gilreath T | Suicide & life-threatening behavior | 38411036 | Suicide Life Threat Behav | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38411036 |
| Utilizing Community-Centered Approaches to Address Black Maternal Mortality. | Falako S, Okoli N, Boateng MO, Sandoval J, Gumudavelly D, Larsuel S, Opara I | Health education & behavior : the official publication of the Society for Public Health Education | 37525982 | Health Educ Behav | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37525982 |
| Sexual Health and Drug Use Prevention for Black Girls (The Dreamer Girls Project): Protocol for an Intervention Development. | Opara I, Gabriel C, Duran-Becerra B, Bond K, Hill AV, Hussett-Richardson S, Alves C, Kershaw T | JMIR research protocols | 37556188 | JMIR Res Protoc | 2023 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/37556188 |
| Relationship between suicide ideation and attempts, bully victimization, dating violence, and depressive symptoms among Black and Hispanic youth. | Opara I, Weerakoon SM, Brooks Stephens JR, Choe T, Gunn JF 3rd, Thrasher SS | Suicide & life-threatening behavior | 37933468 | Suicide Life Threat Behav | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37933468 |
| Adolescent Polysubstance Use and Co-Occurring Weapon Carrying, Bullying Victimization, and Depressive Symptomology: Patterns and Differences in the United States. | Weerakoon SM, Henson-Garcia M, Abraham A, Vidot DC, Messiah SE, Opara I | Child psychiatry and human development | 37477824 | Child Psychiatry Hum Dev | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37477824 |
| Strong Black Women: Linking Stereotypes, Stress, and Overeating Among a Sample of Black Female College Students. | Godbolt D, Opara I, Amutah-Onukagha N | Journal of black studies | 36710718 | J Black Stud | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36710718 |
| Addressing Gendered Racism Against Black Girls Using a Strengths-Based Empowerment-Intersectional Framework for Sexual Health and Substance Use Prevention Programming. | Opara I, Martin R, Hill AV, Calhoun A | Health promotion practice | 37166152 | Health Promot Pract | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37166152 |
| "It Makes Me Feel like I Can Make a Difference": A Qualitative Exploration of Peer Mentoring with Black and Hispanic High School Students. | Opara I, Metzger IW, Dawoud S, Pierre K, Assan MA, Garcia-Reid P, Reid RJ | Youth (Basel, Switzerland) | 39555142 | Youth (Basel) | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/39555142 |
| Human immunodeficiency virus vulnerability and pre-exposure prophylaxis awareness among adolescent girls and young women in Cameroon: A cross-sectional study. | Oh S, Nforbewing Ndenkeh J Jr, Opara I, Conserve DF, Nelson LE, Batubara IMS, Bediang G, Yumo H, Ni Z | Interdisciplinary nursing research | 40893149 | Interdiscip Nurs Res | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40893149 |
| HIV knowledge and protective factors among racial-ethnic minority youth: Moderation by Ethnic identity and LGBQ+ identity. | Lardier DT Jr, Opara I, Asabor EN, Bell F, Garcia-Reid P, Reid RJ | Journal of LGBT youth | 39131490 | J LGBT Youth | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39131490 |
| Empowerment in prevention: a qualitative inquiry into Black girl-centred strategies for reducing HIV/STI and drug misuse risk. | Opara I, Asabor E, Rutledge J, Brooks Stephens JR, Cayo S, Duran-Becerra B, Abrams J | Sexual and reproductive health matters | 39876818 | Sex Reprod Health Matters | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39876818 |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | Genome research | 39653420 | Genome Res | 2024 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/39653420 |
| Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition. | Vollger MR, Korlach J, Eldred KC, Swanson E, Underwood JG, Bohaczuk SC, Mao Y, Cheng YH, Ranchalis J, Blue EE, Schwarze U, Munson KM, Saunders CT, Wenger AM, Allworth A, Chanprasert S, Duerden BL, Glass I, Horike-Pyne M, Kim M, Leppig KA, McLaughlin IJ, Ogawa J, Rosenthal EA, Sheppeard S, Sherman SM, Strohbehn S, Yuen AL, Stacey AW, University of Washington Center for Rare Disease Research, Undiagnosed Diseases Network, Reh TA, Byers PH, Bamshad MJ, Hisama FM, Jarvik GP, Sancak Y, Dipple KM, Stergachis AB | Nature genetics | 39880924 | Nat Genet | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39880924 |
| Stable centromere association of the yeast histone variant Cse4 requires its essential N-terminal domain. | Popchock AR, Hedouin S, Mao Y, Asbury CL, Stergachis AB, Biggins S | The EMBO journal | 39809842 | EMBO J | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39809842 |
| The regulatory potential of transposable elements in maize. | Bubb KL, Hamm MO, Tullius TW, Min JK, Ramirez-Corona B, Mueth NA, Ranchalis J, Mao Y, Bergstrom EJ, Vollger MR, Trapnell C, Cuperus JT, Stergachis AB, Queitsch C | Nature plants | 40360747 | Nat Plants | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40360747 |
| Clinical utility of brain MRS imaging of patients with adult-onset non-cirrhotic hyperammonemia. | Stergachis AB, Krier JB, Merugumala SK, Berry GT, Lin AP | Molecular genetics and metabolism reports | 33763331 | Mol Genet Metab Rep | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33763331 |
| Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions. | Girskis KM, Stergachis AB, DeGennaro EM, Doan RN, Qian X, Johnson MB, Wang PP, Sejourne GM, Nagy MA, Pollina EA, Sousa AMM, Shin T, Kenny CJ, Scotellaro JL, Debo BM, Gonzalez DM, Rento LM, Yeh RC, Song JHT, Beaudin M, Fan J, Kharchenko PV, Sestan N, Greenberg ME, Walsh CA | Neuron | 34478631 | Neuron | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34478631 |
| Dominant-negative variant in SLC1A4 causes an autosomal dominant epilepsy syndrome. | Pujol-Giménez J, Mirzaa G, Blue EE, Albano G, Miller DE, Allworth A, Bennett JT, Byers PH, Chanprasert S, Chen J, Doherty D, Folta AB, Gillentine MA, Glass I, Hing A, Horike-Pyne M, Leppig KA, Parhin A, Ranchalis J, Raskind WH, Rosenthal EA, Schwarze U, Sheppeard S, Strohbehn S, Sybert VP, Timms A, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG)a, Undiagnosed Diseases Network (UDN), Bamshad MJ, Hisama FM, Jarvik GP, Dipple KM, Hediger MA, Stergachis AB | Annals of clinical and translational neurology | 37194416 | Ann Clin Transl Neurol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37194416 |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | bioRxiv : the preprint server for biology | 37131601 | bioRxiv | 2023 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/37131601 |
| RNA polymerases reshape chromatin architecture and couple transcription on individual fibers. | Tullius TW, Isaac RS, Dubocanin D, Ranchalis J, Churchman LS, Stergachis AB | Molecular cell | 39191261 | Mol Cell | 2024 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/39191261 |
| Integrating Single-Molecule Sequencing and Deep Learning to Predict Haplotype-Specific 3D Chromatin Organization in a Mendelian Condition. | Dubocanin D, Kalygina A, Franklin JM, Chittenden C, Vollger MR, Neph S, Stergachis AB, Altemose N | bioRxiv : the preprint server for biology | 40166185 | bioRxiv | 2025 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/40166185 |
| Genetic diversity and regulatory features of human-specific NOTCH2NL duplications. | Real TD, Hebbar P, Yoo D, Antonacci F, Pačar I, Diekhans M, Mikol GJ, Popoola OG, Mallory BJ, Vollger MR, Dishuck PC, Guitart X, Rozanski AN, Munson KM, Hoekzema K, Ranchalis JE, Neph SJ, Sedeño-Cortes AE, Paten B, Salama SR, Stergachis AB, Eichler EE | bioRxiv : the preprint server for biology | 40166283 | bioRxiv | 2025 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/40166283 |
| Principles and functional consequences of plasmid chromatinization in mammalian cells. | Mallory BJ, Tullius TW, Biar CG, Gustafson JA, Bohaczuk SC, Dubocanin D, Starita LM, Stergachis AB | bioRxiv : the preprint server for biology | 40501650 | bioRxiv | 2025 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/40501650 |
| CUT&TIME captures the history of open chromatin in developing neurons. | Eldred KC, Wooten M, Janssens DH, Hahn J, Neph SJ, Edgerton SJ, Wyatt-Draher G, Sherman SM, Ranchalis JE, Stergachis AB, Reh TA, Henikoff S | bioRxiv : the preprint server for biology | 40950047 | bioRxiv | 2025 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/40950047 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis AB, O'Toole E, Biggins S | Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology | 40608157 | Chromosome Res | 2025 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/40608157 |
| RNA polymerases reshape chromatin and coordinate transcription on individual fibers. | Tullius TW, Isaac RS, Ranchalis J, Dubocanin D, Churchman LS, Stergachis AB | bioRxiv : the preprint server for biology | 38187631 | bioRxiv | 2023 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/38187631 |
| The regulatory potential of transposable elements in maize. | Bubb KL, Hamm MO, Tullius TW, Min JK, Ramirez-Corona B, Mueth NA, Ranchalis J, Mao Y, Bergstrom EJ, Vollger MR, Trapnell C, Cuperus JT, Stergachis AB, Queitsch C | bioRxiv : the preprint server for biology | 39026747 | bioRxiv | 2025 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/39026747 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis A, O'Toole E, Biggins S | Research square | 40313741 | Res Sq | 2025 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/40313741 |
| A haplotype-resolved view of human gene regulation. | Vollger MR, Swanson EG, Neph SJ, Ranchalis J, Munson KM, Ho CH, Cheng YHH, Sedeño-Cortés AE, Fondrie WE, Bohaczuk SC, Dippel MA, Mao Y, Parmalee NL, Mallory BJ, Harvey WT, Kwon Y, Garcia GH, Hoekzema K, Meyer JG, Cicek M, Eichler EE, Noble WS, Witten DM, Bennett JT, Ray JP, Stergachis AB | bioRxiv : the preprint server for biology | 40501892 | bioRxiv | 2025 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/40501892 |
| DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. | Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR | Genome research | 38849157 | Genome Res | 2024 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/38849157 |
| Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. | Isaac RS, Tullius TW, Hansen KG, Dubocanin D, Couvillion M, Stergachis AB, Churchman LS | Nature structural & molecular biology | 38347148 | Nat Struct Mol Biol | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38347148 |
| Evaluation of N (6)-methyldeoxyadenosine antibody-based genomic profiling in eukaryotes. | Debo BM, Mallory BJ, Stergachis AB | Genome research | 36788024 | Genome Res | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36788024 |
| Full-length isoform sequencing for resolving the molecular basis of Charcot-Marie-Tooth 2A. | Stergachis AB, Blue EE, Gillentine MA, Wang LK, Schwarze U, Cortés AS, Ranchalis J, Allworth A, Bland AE, Chanprasert S, Chen J, Doherty D, Folta AB, Glass I, Horike-Pyne M, Huang AY, Khan AT, Leppig KA, Miller DE, Mirzaa G, Parhin A, Raskind W, Rosenthal EA, Sheppeard S, Strohbehn S, Sybert VP, Tran TT, Wener M, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Byers PH, Nelson SF, Bamshad MJ, Dipple KM, Jarvik GP, Hoppins S, Hisama FM | bioRxiv : the preprint server for biology | 36798371 | bioRxiv | 2023 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/36798371 |
| Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition. | Vollger MR, Korlach J, Eldred KC, Swanson E, Underwood JG, Cheng YH, Ranchalis J, Mao Y, Blue EE, Schwarze U, Munson KM, Saunders CT, Wenger AM, Allworth A, Chanprasert S, Duerden BL, Glass I, Horike-Pyne M, Kim M, Leppig KA, McLaughlin IJ, Ogawa J, Rosenthal EA, Sheppeard S, Sherman SM, Strohbehn S, Yuen AL, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Reh TA, Byers PH, Bamshad MJ, Hisama FM, Jarvik GP, Sancak Y, Dipple KM, Stergachis AB | bioRxiv : the preprint server for biology | 37808736 | bioRxiv | 2023 Sep 27 | https://www.ncbi.nlm.nih.gov/pubmed/37808736 |
| Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. | Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB | bioRxiv : the preprint server for biology | 39026856 | bioRxiv | 2024 Jul 13 | https://www.ncbi.nlm.nih.gov/pubmed/39026856 |
| Conservation of dichromatin organization along regional centromeres. | Dubocanin D, Hartley GA, Sedeño Cortés AE, Mao Y, Hedouin S, Ranchalis J, Agarwal A, Logsdon GA, Munson KM, Real T, Mallory BJ, Eichler EE, Biggins S, O'Neill RJ, Stergachis AB | Cell genomics | 40147439 | Cell Genom | 2025 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/40147439 |
| Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule. | Barrero DJ, Hedouin S, Mao Y, Asbury CL, Stergachis A, O'Toole E, Biggins S | bioRxiv : the preprint server for biology | 39975131 | bioRxiv | 2025 Jan 27 | https://www.ncbi.nlm.nih.gov/pubmed/39975131 |
| Transcripts of repetitive DNA elements signal to block phagocytosis of hematopoietic stem cells. | Pessoa Rodrigues C, Collins JM, Yang S, Martinez C, Kim JW, Lama C, Nam AS, Alt C, Lin C, Zon LI | Science (New York, N.Y.) | 39264994 | Science | 2024 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/39264994 |
| Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics. | Nam AS, Chaligne R, Landau DA | Nature reviews. Genetics | 32807900 | Nat Rev Genet | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32807900 |
| Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation. | Nam AS, Dusaj N, Izzo F, Murali R, Myers RM, Mouhieddine TH, Sotelo J, Benbarche S, Waarts M, Gaiti F, Tahri S, Levine R, Abdel-Wahab O, Godley LA, Chaligne R, Ghobrial I, Landau DA | Nature genetics | 36138229 | Nat Genet | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36138229 |
| CALR-mutated cells are vulnerable to combined inhibition of the proteasome and the endoplasmic reticulum stress response. | Jutzi JS, Marneth AE, Jiménez-Santos MJ, Hem J, Guerra-Moreno A, Rolles B, Bhatt S, Myers SA, Carr SA, Hong Y, Pozdnyakova O, van Galen P, Al-Shahrour F, Nam AS, Mullally A | Leukemia | 36473980 | Leukemia | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36473980 |
| Structural parasitology of the malaria parasite Plasmodium falciparum. | Anton L, Cobb DW, Ho CM | Trends in biochemical sciences | 34887149 | Trends Biochem Sci | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34887149 |
| Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition. | Ho CM, Jih J, Lai M, Li X, Goldberg DE, Beck JR, Zhou ZH | Proceedings of the National Academy of Sciences of the United States of America | 34446549 | Proc Natl Acad Sci U S A | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/34446549 |
| Associations between healthcare utilization and access and diabetic retinopathy complications using All of Us nationwide survey data. | Chan AX, McDermott Iv JJ, Lee TC, Ye GY, Shahrvini B, Radha Saseendrakumar B, Baxter SL | PloS one | 35704625 | PLoS One | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35704625 |
| Racial, Ethnic, and Socioeconomic Disparities in Glaucoma Onset and Severity in a Diverse Nationwide Cohort in the United States. | Acuff K, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Journal of glaucoma | 37523618 | J Glaucoma | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37523618 |
| Microperimetry Findings in Pentosan Polysulfate Maculopathy. | Most J, Kalaw FGP, Walker E, Arias JD, Charng J, Baxter SL, Nudleman E, Ferreyra H, Freeman WR, Chen FK, Borooah S | Ophthalmology. Retina | 37619623 | Ophthalmol Retina | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37619623 |
| Investigation of associations between Piezo1 mechanoreceptor gain-of-function variants and glaucoma-related phenotypes in humans and mice. | Baxter SL, Keenan WT, Athanas AJ, Proudfoot JA, Zangwill LM, Ayyagari R, Liebmann JM, Girkin CA, Patapoutian A, Weinreb RN | Scientific reports | 33149214 | Sci Rep | 2020 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/33149214 |
| Review of glaucoma medication adherence monitoring in the digital health era. | Erras A, Shahrvini B, Weinreb RN, Baxter SL | The British journal of ophthalmology | 33858837 | Br J Ophthalmol | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33858837 |
| Effects of Smoking on Optic Nerve Head Microvasculature Density in Glaucoma. | Eslani M, Nishida T, Weinreb RN, Baxter S, Mahmoudinezhad G, Kamalipour A, Yarmohammadi A, Zangwill LM, Moghimi S | Journal of glaucoma | 35882030 | J Glaucoma | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/35882030 |
| Association of Electronic Health Record Inbasket Message Characteristics With Physician Burnout. | Baxter SL, Saseendrakumar BR, Cheung M, Savides TJ, Longhurst CA, Sinsky CA, Millen M, Tai-Seale M | JAMA network open | 36449288 | JAMA Netw Open | 2022 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/36449288 |
| Impact of Pupil Dilation on Optical Coherence Tomography Angiography Retinal Microvasculature in Healthy Eyes. | Villatoro G, Bowd C, Proudfoot JA, Manalastas PIC, Nguyen KD, Hou H, Penteado RC, Li AJ, Moghimi S, Ghahari E, Weinreb RN, Zangwill LM | Journal of glaucoma | 32890106 | J Glaucoma | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32890106 |
| Barriers to Extracting and Harmonizing Glaucoma Testing Data: Gaps, Shortcomings, and the Pursuit of FAIRness. | Radgoudarzi N, Hallaj S, Boland MV, Stagg B, Wang SY, Xu B, Swaminathan SS, Brown EN, Chen A, Sun CQ, Amarasekera DC, Myers JS, Saifee M, Halfpenny W, Dirkes K, Zangwill L, Goetz KE, Hribar M, Baxter SL | Ophthalmology science | 39429240 | Ophthalmol Sci | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39429240 |
| Evaluation of bias and gender/racial concordance based on sentiment analysis of narrative evaluations of clinical clerkships using natural language processing. | Bhanvadia S, Radha Saseendrakumar B, Guo J, Spadafore M, Daniel M, Lander L, Baxter SL | BMC medical education | 38491461 | BMC Med Educ | 2024 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/38491461 |
| Gender Disparities in Depression, Stress, and Social Support Among Glaucoma Patients. | Delavar A, Bu JJ, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Translational vision science & technology | 38149963 | Transl Vis Sci Technol | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/38149963 |
| Evaluation and Optimization of Diabetic Retinopathy Screenings for Uninsured Latinx Patients in a Resource-Limited Student-Run Free Clinic. | Bu JJ, Delavar A, Dayao JK, Lieu A, Chuter BG, Chen K, Nishihara T, Meller L, Camp AS, Lee JE, Baxter SL | Journal of student-run clinics | 38287932 | J Stud Run Clin | 2024 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/38287932 |
| Proactive Decision Support for Glaucoma Treatment: Predicting Surgical Interventions with Clinically Available Data. | Christopher M, Gonzalez R, Huynh J, Walker E, Radha Saseendrakumar B, Bowd C, Belghith A, Goldbaum MH, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Weinreb RN, Baxter SL, Zangwill LM | Bioengineering (Basel, Switzerland) | 38391627 | Bioengineering (Basel) | 2024 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/38391627 |
| Implementation Mapping of the Collaborative University of California Teleophthalmology Initiative (CUTI): A Qualitative Study Using the Exploration, Preparation, Implementation, and Sustainment (EPIS) Framework. | Radgoudarzi N, Gregg C, Quackenbush Q, Yiu G, Freeby M, Su G, Baxter S, Thorne C, Willard-Grace R | Cureus | 39119397 | Cureus | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39119397 |
| What will the future role for large language models (LLMs) be in managing patients with glaucoma? | Tavakoli K, Hallaj S, Baxter SL | Expert review of ophthalmology | 40800545 | Expert Rev Ophthalmol | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40800545 |
| Associations Between Thyroid Eye Disease and Glaucoma Among Those Enrolled in the National Institutes of Health All of Us Research Program. | Delavar A, Radha Saseendrakumar B, Lee TC, Topilow NJ, Ting MA, Liu CY, Korn BS, Weinreb RN, Kikkawa DO, Baxter SL | Ophthalmic plastic and reconstructive surgery | 36394556 | Ophthalmic Plast Reconstr Surg | 2023 Jul-Aug 01 | https://www.ncbi.nlm.nih.gov/pubmed/36394556 |
| Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database. | Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY | Ophthalmic plastic and reconstructive surgery | 36727790 | Ophthalmic Plast Reconstr Surg | 2023 May-Jun 01 | https://www.ncbi.nlm.nih.gov/pubmed/36727790 |
| Assessing Usability of Smartwatch Digital Health Devices for Home Blood Pressure Monitoring among Glaucoma Patients. | Bhanvadia SB, Brar MS, Delavar A, Tavakoli K, Saseendrakumar BR, Weinreb RN, Zangwill LM, Baxter SL | Informatics (MDPI) | 36873830 | Informatics (MDPI) | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36873830 |
| Racial Disparities in Barriers to Care for Patients With Diabetic Retinopathy in a Nationwide Cohort. | Huang BB, Radha Saseendrakumar B, Delavar A, Baxter SL | Translational vision science & technology | 36928128 | Transl Vis Sci Technol | 2023 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/36928128 |
| Data Sciences and Visual Health Disparities. | Legault G, Nwanyanwu K, Baxter SL | Ophthalmology | 36058740 | Ophthalmology | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36058740 |
| Medication Affordability and Self-Advocacy Among Racial/Ethnic Minorities in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of general internal medicine | 35641727 | J Gen Intern Med | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35641727 |
| Social Determinants of Health Data Availability for Patients with Eye Conditions. | Lee TC, Saseendrakumar BR, Nayak M, Chan AX, McDermott JJ 4th, Shahrvini B, Ye GY, Sitapati AM, Nebeker C, Baxter SL | Ophthalmology science | 35662804 | Ophthalmol Sci | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35662804 |
| Comparing the Use of DynaMed and UpToDate by Physician Trainees in Clinical Decision-Making: A Randomized Crossover Trial. | Baxter SL, Lander L, Clay B, Bell J, Hansen K, Walker A, Tai-Seale M | Applied clinical informatics | 35108739 | Appl Clin Inform | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35108739 |
| Evaluating the neuroprotective impact of senolytic drugs on human vision. | El-Nimri NW, Moore SM, Zangwill LM, Proudfoot JA, Weinreb RN, Skowronska-Krawczyk D, Baxter SL | Scientific reports | 33303874 | Sci Rep | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/33303874 |
| Social determinants associated with loss of an eye in the United States using the All of Us nationwide database. | Chan AX, Radha Saseendrakumar B, Ozzello DJ, Ting M, Yoon JS, Liu CY, Korn BS, Kikkawa DO, Baxter SL | Orbit (Amsterdam, Netherlands) | 34969350 | Orbit | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34969350 |
| Associations between Socioeconomic Factors and Visit Adherence among Patients with Glaucoma in the All of Us Research Program. | Acuff K, Delavar A, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 36746242 | Ophthalmol Glaucoma | 2023 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/36746242 |
| Impact of COVID-19 on the Delivery of Eye Care to Uninsured Diabetic Patients at a Student-Run Free Clinic: A Comprehensive Evaluation of Eye Clinic Performance. | Chuter BG, Lieu A, Dayao JKO, Bu JJ, Chen K, Nishihara T, Baxter SL | Journal of student-run clinics | 36890867 | J Stud Run Clin | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36890867 |
| Social Factors Associated with the Risk of Glaucoma Suspect Conversion to Glaucoma: Analysis of the Nationwide All of Us Program. | Wu JH, Halfpenny W, Bu J, Brar M, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 38959998 | Ophthalmol Glaucoma | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/38959998 |
| Availability of Physical Activity Tracking Data from Wearable Devices for Glaucoma Patients. | Bhanvadia SB, Meller L, Madjedi K, Weinreb RN, Baxter SL | Information (Basel) | 37771713 | Information (Basel) | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37771713 |
| A review of ophthalmology education in the era of generative artificial intelligence. | Heinke A, Radgoudarzi N, Huang BB, Baxter SL | Asia-Pacific journal of ophthalmology (Philadelphia, Pa.) | 39134176 | Asia Pac J Ophthalmol (Phila) | 2024 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/39134176 |
| Gap Analysis of Glaucoma Examination Concept Representations within Standard Systemized Nomenclature of Medicine - Clinical Terms. | Hallaj S, Khawaja AP, Rodrigues IAS, Boland MV, Brown EN, Chen A, Stagg BC, Stein JD, Sun CQ, Mahe-Cook AL, Swaminathan SS, Wang SY, Xu BY, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39147325 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39147325 |
| Federated Learning in Glaucoma: A Comprehensive Review and Future Perspectives. | Hallaj S, Chuter BG, Lieu AC, Singh P, Kalpathy-Cramer J, Xu BY, Christopher M, Zangwill LM, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39214457 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39214457 |
| Medical, Environmental, and Social Determinants Associated With Periocular Cutaneous Malignancies in the United States Using the All of Us National Database. | Radgoudarzi N, Dallalzadeh L, Saseendrakumar BR, Guo J, Halfpenny W, Kikkawa DO, Baxter S | Cureus | 39219888 | Cureus | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39219888 |
| Association Between Glucagon-Like Peptide-1 Receptor Agonists Exposure and Intraocular Pressure Change: GLP-1 Receptor Agonists and Intraocular Pressure Change. | Hallaj S, Halfpenny W, Chuter BG, Weinreb RN, Baxter SL, Cui QN | American journal of ophthalmology | 39237049 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39237049 |
| Variations in Using Diagnosis Codes for Defining Age-Related Macular Degeneration Cohorts. | Kalaw FGP, Chen JS, Baxter SL | Informatics (MDPI) | 40012991 | Informatics (MDPI) | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40012991 |
| Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. | Lee CS, Krakauer C, Su YR, Walker RL, Blazes M, McCurry SM, Bowen JD, McCormick WC, Lee AY, Boyko EJ, O'Hare AM, Larson EB, Crane PK | American journal of ophthalmology | 36513155 | Am J Ophthalmol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36513155 |
| Internal carotid artery aneurysm presenting as diplopia via telemedicine during COVID-19. | Baxter SL, Kuo DE, Robbins SL | Journal of telemedicine and telecare | 33412986 | J Telemed Telecare | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/33412986 |
| Retinal tissue and microvasculature loss in COVID-19 infection. | Kalaw FGP, Warter A, Cavichini M, Knight D, Li A, Deussen D, Galang C, Heinke A, Mendoza V, Borooah S, Baxter SL, Bartsch DU, Cheng L, Freeman WR | Scientific reports | 36991025 | Sci Rep | 2023 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/36991025 |
| Data Sources for Evaluating Health Disparities in Ophthalmology: Where We Are and Where We Need to Go. | Baxter SL, Nwanyanwu K, Legault G, Lee AY | Ophthalmology | 36058733 | Ophthalmology | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36058733 |
| Ethical considerations for large language models in ophthalmology. | Kalaw FGP, Baxter SL | Current opinion in ophthalmology | 39259616 | Curr Opin Ophthalmol | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39259616 |
| Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. | Kalaw FGP, Tavakoli K, Baxter SL | Ophthalmology science | 38025157 | Ophthalmol Sci | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38025157 |
| Assessment of Missing Data on Glaucoma Severity Among Participants in the NIH All of Us Research Program of the United States. | Acuff KN, Radha Saseendrakumar B, Weinreb RN, Baxter SL | Journal of glaucoma | 39133059 | J Glaucoma | 2025 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/39133059 |
| RETINAL STRUCTURAL CHANGES AFTER CESSATION OF PENTOSAN POLYSULFATE SODIUM. | Kalaw FGP, Most J, Kako RN, Sharma P, Arias JD, Chen JS, Lin AC, Walker E, Bartsch DG, Baxter SL, Ferreyra H, Freeman WR, Borooah S | Retina (Philadelphia, Pa.) | 39174300 | Retina | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39174300 |
| High-Density Lipoproteins Associated with Age-Related Macular Degeneration in the All of Us Research Program. | Chen JS, Esko JD, Walker E, Gordts PLSM, Baxter SL, Toomey CB | Ophthalmology | 39756691 | Ophthalmology | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/39756691 |
| Gaps in standards for integrating artificial intelligence technologies into ophthalmic practice. | Baxter SL, Lee AY | Current opinion in ophthalmology | 34231531 | Curr Opin Ophthalmol | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34231531 |
| Healthcare Access and Utilization Among Glaucoma Patients in a Nationwide Cohort. | Delavar A, Saseendrakumar BR, Weinreb RN, Baxter SL | Journal of glaucoma | 36223287 | J Glaucoma | 2023 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/36223287 |
| Implementing clinical informatics tools for primary care-based diabetic retinopathy screening. | Baxter SL, Quackenbush Q, Cerda J, Gregg C, Millen M, Thorne C | The American journal of managed care | 36252175 | Am J Manag Care | 2022 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/36252175 |
| Towards effective data sharing in ophthalmology: data standardization and data privacy. | Halfpenny W, Baxter SL | Current opinion in ophthalmology | 35819893 | Curr Opin Ophthalmol | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/35819893 |
| Predictive Analytics for Glaucoma Using Data From the All of Us Research Program. | Baxter SL, Saseendrakumar BR, Paul P, Kim J, Bonomi L, Kuo TT, Loperena R, Ratsimbazafy F, Boerwinkle E, Cicek M, Clark CR, Cohn E, Gebo K, Mayo K, Mockrin S, Schully SD, Ramirez A, Ohno-Machado L, All of Us Research Program Investigators | American journal of ophthalmology | 33497675 | Am J Ophthalmol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33497675 |
| Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. | Wu Y, Olvera-Barrios A, Yanagihara R, Kung TH, Lu R, Leung I, Mishra AV, Nussinovitch H, Grimaldi G, Blazes M, Lee CS, Egan C, Tufail A, Lee AY | Ophthalmology | 36154868 | Ophthalmology | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36154868 |
| Social determinants of health and health disparities in glaucoma: A review. | Acuff K, Wu JH, Varkhedi V, Baxter SL | Clinical & experimental ophthalmology | 38385607 | Clin Exp Ophthalmol | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38385607 |
| Associations of smoking and alcohol consumption with the development of open angle glaucoma: a retrospective cohort study. | Mahmoudinezhad G, Nishida T, Weinreb RN, Baxter SL, Chang AC, Nikkhoy N, Walker E, Liebmann JM, Girkin CA, Moghimi S | BMJ open | 37793935 | BMJ Open | 2023 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/37793935 |
| Ocular Health and National Data Standards: A Case for Including Visual Acuity in the United States Core Data for Interoperability (USCDI). | Baxter SL, Reed AA, Maa A, Boland MV, Borkar DS, Brown EN, Lum F, Goetz KE | Ophthalmology science | 36570621 | Ophthalmol Sci | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36570621 |
| Trends and practices following the 2016 hydroxychloroquine screening guidelines. | Kalaw FGP, Arnett J, Baxter SL, Walker E, Pedersen B, Borooah S | Scientific reports | 37730825 | Sci Rep | 2023 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/37730825 |
| Social and Health Care Utilization Factors Associated With Ophthalmic Visit Nonadherence in Glaucoma: An All of Us Study. | Wu JH, Varkhedi V, Radha Saseendrakumar B, Acuff K, Weinreb RN, Baxter SL | Journal of glaucoma | 37671531 | J Glaucoma | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37671531 |
| Novel Association between Opioid Use and Increased Risk of Retinal Vein Occlusion Using the National Institutes of Health All of Us Research Program. | McDermott JJ 4th, Lee TC, Chan AX, Ye GY, Shahrvini B, Saseendrakumar BR, Ferreyra H, Nudleman E, Baxter SL | Ophthalmology science | 35721456 | Ophthalmol Sci | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35721456 |
| Clonal Hematopoiesis of Indeterminate Potential and Kidney Function Decline in the General Population. | Kestenbaum B, Bick AG, Vlasschaert C, Rauh MJ, Lanktree MB, Franceschini N, Shoemaker MB, Harris RC Jr, Psaty BM, Köttgen A, Natarajan P, Robinson-Cohen C | American journal of kidney diseases : the official journal of the National Kidney Foundation | 36241009 | Am J Kidney Dis | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36241009 |
| Clonal Somatic Mutations in Chronic Lung Diseases Are Associated with Reduced Lung Function. | Yun JH, Khan MAW, Ghosh A, Hobbs BD, Castaldi PJ, Hersh CP, Miller PG, Cool CD, Sciurba F, Barwick L, Limper AH, Flaherty K, Criner GJ, Brown K, Wise R, Martinez F, Silverman EK, DeMeo D, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Cho MH, Bick AG | American journal of respiratory and critical care medicine | 37788444 | Am J Respir Crit Care Med | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37788444 |
| Epigenetic and proteomic signatures associate with clonal hematopoiesis expansion rate. | Mack TM, Raddatz MA, Pershad Y, Nachun DC, Taylor KD, Guo X, Shuldiner AR, O'Connell JR, Kenny EE, Loos RJF, Redline S, Cade BE, Psaty BM, Bis JC, Brody JA, Silverman EK, Yun JH, Cho MH, DeMeo DL, Levy D, Johnson AD, Mathias RA, Yanek LR, Heckbert SR, Smith NL, Wiggins KL, Raffield LM, Carson AP, Rotter JI, Rich SS, Manichaikul AW, Gu CC, Chen YI, Lee WJ, Shoemaker MB, Roden DM, Kooperberg C, Auer PL, Desai P, Blackwell TW, Smith AV, Reiner AP, Jaiswal S, Weinstock JS, Bick AG | Nature aging | 38834882 | Nat Aging | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38834882 |
| Long-term longitudinal analysis of 4,187 participants reveals insights into determinants of clonal hematopoiesis. | Uddin MM, Saadatagah S, Niroula A, Yu B, Hornsby WE, Ganesh S, Lannery K, Schuermans A, Honigberg MC, Bick AG, Libby P, Ebert BL, Ballantyne CM, Natarajan P | Nature communications | 39251642 | Nat Commun | 2024 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/39251642 |
| Human Plasma Proteomic Profile of Clonal Hematopoiesis. | Yu Z, Vromman A, Nguyen NQH, Schuermans A, Rentz T, Vellarikkal SK, Uddin MM, Niroula A, Griffin G, Honigberg MC, Lin AE, Gibson CJ, Katz DH, Tahir U, Fang S, Haidermota S, Ganesh S, Antoine T, Weinstock J, Austin TR, Ramachandran VS, Peloso GM, Hornsby W, Ganz P, Manson JE, Haring B, Kooperberg CL, Reiner AP, Bis JC, Psaty BM, Min YI, Correa A, Lange LA, Post WS, Rotter JI, Rich SS, Wilson JG, Ebert BL, Yu B, Ballantyne CM, Coresh J, Sankaran VG, Bick AG, Jaiswal S, Gerszten RE, NHLBI Trans-Omics for Precision Medicine, Libby P, Gupta RM, Natarajan P | bioRxiv : the preprint server for biology | 39554199 | bioRxiv | 2024 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/39554199 |
| Association of Diet Quality With Prevalence of Clonal Hematopoiesis and Adverse Cardiovascular Events. | Bhattacharya R, Zekavat SM, Uddin MM, Pirruccello J, Niroula A, Gibson C, Griffin GK, Libby P, Ebert BL, Bick A, Natarajan P | JAMA cardiology | 34106216 | JAMA Cardiol | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34106216 |
| Healthy Lifestyle and Clonal Hematopoiesis of Indeterminate Potential: Results From the Women's Health Initiative. | Haring B, Reiner AP, Liu J, Tobias DK, Whitsel E, Berger JS, Desai P, Wassertheil-Smoller S, LaMonte MJ, Hayden KM, Bick AG, Natarajan P, Weinstock JS, Nguyen PK, Stefanick M, Simon MS, Eaton CB, Kooperberg C, Manson JE | Journal of the American Heart Association | 33619969 | J Am Heart Assoc | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33619969 |
| Premature Menopause, Clonal Hematopoiesis, and Coronary Artery Disease in Postmenopausal Women. | Honigberg MC, Zekavat SM, Niroula A, Griffin GK, Bick AG, Pirruccello JP, Nakao T, Whitsel EA, Farland LV, Laurie C, Kooperberg C, Manson JE, Gabriel S, Libby P, Reiner AP, Ebert BL, NHLBI Trans-Omics for Precision Medicine Program, Natarajan P | Circulation | 33161765 | Circulation | 2021 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/33161765 |
| Hematopoietic mosaic chromosomal alterations and risk for infection among 767,891 individuals without blood cancer. | Zekavat SM, Lin SH, Bick AG, Liu A, Paruchuri K, Uddin MM, Ye Y, Yu Z, Liu X, Kamatani Y, Pirruccello JP, Pampana A, Loh PR, Kohli P, McCarroll SA, Neale B, Engels EA, Brown DW, Smoller JW, Green R, Karlson EW, Lebo M, Ellinor PT, Weiss ST, Daly MJ, Biobank Japan Project, FinnGen Consortium, Terao C, Zhao H, Ebert BL, COVID-19 Host Genetics Initiative, Ganna A, Machiela MJ, Genovese G, Natarajan P | medRxiv : the preprint server for health sciences | 33236019 | medRxiv | 2020 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/33236019 |
| Cost-Effective and Scalable Clonal Hematopoiesis Assay Provides Insight into Clonal Dynamics. | Mack T, Vlasschaert C, von Beck K, Silver AJ, Heimlich JB, Poisner H, Condon HR, Ulloa J, Sochacki AL, Spaulding TP, Kishtagari A, Bejan CA, Xu Y, Savona MR, Jones A, Bick AG | The Journal of molecular diagnostics : JMD | 38588769 | J Mol Diagn | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38588769 |
| Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. | Bick AG, Popadin K, Thorball CW, Uddin MM, Zanni MV, Yu B, Cavassini M, Rauch A, Tarr P, Schmid P, Bernasconi E, Günthard HF, Libby P, Boerwinkle E, McLaren PJ, Ballantyne CM, Grinspoon S, Natarajan P, Fellay J, Swiss HIV Cohort Study | Scientific reports | 35022435 | Sci Rep | 2022 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/35022435 |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJF, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun JH, DeMeo D, Levy D, Johnson AD, Mathias RA, Taub MA, Arnett D, North KE, Raffield LM, Carson AP, Doyle MF, Rich SS, Rotter JI, Guo X, Cox NJ, Roden DM, Franceschini N, Desai P, Reiner AP, Auer PL, Scheet PA, Jaiswal S, Weinstock JS, Bick AG | Nature communications | 38714703 | Nat Commun | 2024 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/38714703 |
| Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood. | Schuermans A, Nakao T, Ruan Y, Koyama S, Yu Z, Uddin MM, Haidermota S, Hornsby W, Lewandowski AJ, Bick AG, Niroula A, Jaiswal S, Ebert BL, Natarajan P, Honigberg MC | Journal of the American Heart Association | 37345823 | J Am Heart Assoc | 2023 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/37345823 |
| TP53-mediated clonal hematopoiesis confers increased risk for incident atherosclerotic disease. | Zekavat SM, Viana-Huete V, Matesanz N, Jorshery SD, Zuriaga MA, Uddin MM, Trinder M, Paruchuri K, Zorita V, Ferrer-Pérez A, Amorós-Pérez M, Kunderfranco P, Carriero R, Greco CM, Aroca-Crevillen A, Hidalgo A, Damrauer SM, Ballantyne CM, Niroula A, Gibson CJ, Pirruccello J, Griffin G, Ebert BL, Libby P, Fuster V, Zhao H, Ghassemi M, Natarajan P, Bick AG, Fuster JJ, Klarin D | Nature cardiovascular research | 36949957 | Nat Cardiovasc Res | 2023 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/36949957 |
| Demonstrating paths for unlocking the value of cloud genomics through cross cohort analysis. | Deflaux N, Selvaraj MS, Condon HR, Mayo K, Haidermota S, Basford MA, Lunt C, Philippakis AA, Roden DM, Denny JC, Musick A, Collins R, Allen N, Effingham M, Glazer D, Natarajan P, Bick AG | Nature communications | 37669985 | Nat Commun | 2023 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/37669985 |
| Multiomic profiling of human clonal hematopoiesis reveals genotype and cell-specific inflammatory pathway activation. | Heimlich JB, Bhat P, Parker AC, Jenkins MT, Vlasschaert C, Ulloa J, Van Amburg JC, Potts CR, Olson S, Silver AJ, Ahmad A, Sharber B, Brown D, Hu N, van Galen P, Savona MR, Bick AG, Ferrell PB | Blood advances | 38507736 | Blood Adv | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/38507736 |
| Long-term longitudinal analysis of 4,187 participants reveals new insights into determinants of incident clonal hematopoiesis. | Uddin MM, Saadatagah S, Niroula A, Yu B, Hornsby W, Ganesh S, Lannery K, Shuermans A, Honigberg MC, Bick AG, Libby P, Ebert BL, Ballantyne CM, Natarajan P | medRxiv : the preprint server for health sciences | 37732181 | medRxiv | 2023 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/37732181 |
| Determinants of mosaic chromosomal alteration fitness. | Pershad Y, Mack T, Poisner H, Jakubek YA, Stilp AM, Mitchell BD, Lewis JP, Boerwinkle E, Loos RJ, Chami N, Wang Z, Barnes K, Pankratz N, Fornage M, Redline S, Psaty BM, Bis JC, Shojaie A, Silverman EK, Cho MH, Yun J, DeMeo D, Levy D, Johnson A, Mathias R, Taub M, Arnett D, North K, Raffield LM, Carson A, Doyle MF, Rich SS, Rotter JI, Guo X, Cox N, Roden DM, Franceschini N, Desai P, Reiner A, Auer PL, Scheet P, Jaiswal S, Weinstock JS, Bick AG | medRxiv : the preprint server for health sciences | 37905118 | medRxiv | 2023 Oct 21 | https://www.ncbi.nlm.nih.gov/pubmed/37905118 |
| Interleukin-6 Receptor Polymorphism Attenuates Clonal Hematopoiesis-Mediated Coronary Artery Disease Risk Among 451 180 Individuals in the UK Biobank. | Vlasschaert C, Heimlich JB, Rauh MJ, Natarajan P, Bick AG | Circulation | 36689568 | Circulation | 2023 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/36689568 |
| A practical approach to curate clonal hematopoiesis of indeterminate potential in human genetic data sets. | Vlasschaert C, Mack T, Heimlich JB, Niroula A, Uddin MM, Weinstock J, Sharber B, Silver AJ, Xu Y, Savona M, Gibson C, Lanktree MB, Rauh MJ, Ebert BL, Natarajan P, Jaiswal S, Bick AG | Blood | 36652671 | Blood | 2023 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/36652671 |
| Inherited resilience to clonal hematopoiesis by modifying stem cell RNA regulation. | Agarwal G, Antoszewski M, Xie X, Pershad Y, Arora UP, Poon CL, Lyu P, Lee AJ, Guo CJ, Ye T, Norford LB, Neehus AL, Volpe LD, Wahlster L, Ranasinghe D, Ho TC, Barlowe TS, Chow A, Schurer A, Taggart J, Durham BH, Abdel-Wahab O, McGraw KL, Allan JM, Soldatov R, Bick AG, Kharas MG, Sankaran VG | bioRxiv : the preprint server for biology | 40196615 | bioRxiv | 2025 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/40196615 |
| Germline genetic variation impacts clonal hematopoiesis landscape and progression to malignancy. | Liu J, Tran D, Xue L, Wiley BJ, Vlasschaert C, Watson CJ, MacGregor HAJ, Zong X, Chan ICC, Das I, Uddin MM, Niroula A, Griffin G, Ebert BL, Mack T, Pershad Y, Sharber B, Berger M, Zehir A, Ptashkin R, Levine RL, Papaemmanuil E, Joseph V, Gao T, Kemel Y, Mandelker D, Stopsack KH, Pharoah PDP, Mukherjee S, Ding L, Cao Y, Walter MJ, Blundell JR, Chatterjee N, Offit K, Godley LA, Link DC, Stadler ZK, Bick AG, Natarajan P, Bolton KL | Nature genetics | 40664769 | Nat Genet | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40664769 |
| Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing. | Smajlović H, Shajii A, Berger B, Cho H, Numanagić I | Genome biology | 36631897 | Genome Biol | 2023 Jan 11 | https://www.ncbi.nlm.nih.gov/pubmed/36631897 |
| sfkit: a web-based toolkit for secure and federated genomic analysis. | Mendelsohn S, Froelicher D, Loginov D, Bernick D, Berger B, Cho H | Nucleic acids research | 37246709 | Nucleic Acids Res | 2023 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/37246709 |
| k-SALSA: k-anonymous synthetic averaging of retinal images via local style alignment. | Jeon M, Park H, Kim HJ, Morley M, Cho H | Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision | 37525827 | Comput Vis ECCV | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37525827 |
| Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption. | Froelicher D, Troncoso-Pastoriza JR, Raisaro JL, Cuendet MA, Sousa JS, Cho H, Berger B, Fellay J, Hubaux JP | Nature communications | 34635645 | Nat Commun | 2021 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/34635645 |
| Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 39027313 | Res Comput Mol Biol | 2024 Apr-May | https://www.ncbi.nlm.nih.gov/pubmed/39027313 |
| Scalable and Privacy-Preserving Federated Principal Component Analysis. | Froelicher D, Cho H, Edupalli M, Sousa JS, Bossuat JP, Pyrgelis A, Troncoso-Pastoriza JR, Berger B, Hubaux JP | Proceedings. IEEE Symposium on Security and Privacy | 38665901 | Proc IEEE Symp Secur Priv | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/38665901 |
| Privacy-Enhancing Technologies in Biomedical Data Science. | Cho H, Froelicher D, Dokmai N, Nandi A, Sadhuka S, Hong MM, Berger B | Annual review of biomedical data science | 39178425 | Annu Rev Biomed Data Sci | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/39178425 |
| Reconstruction of private genomes through reference-based genotype imputation. | Mosca MJ, Cho H | Genome biology | 38053191 | Genome Biol | 2023 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/38053191 |
| Assessing transcriptomic reidentification risks using discriminative sequence models. | Sadhuka S, Fridman D, Berger B, Cho H | Genome research | 37541758 | Genome Res | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37541758 |
| Secure and federated genome-wide association studies for biobank-scale datasets. | Cho H, Froelicher D, Chen J, Edupalli M, Pyrgelis A, Troncoso-Pastoriza JR, Hubaux JP, Berger B | Nature genetics | 39994472 | Nat Genet | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/39994472 |
| Privacy-Preserving Genotype Imputation in a Trusted Execution Environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) | 34859247 | Res Comput Mol Biol | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34859247 |
| Privacy-preserving genotype imputation in a trusted execution environment. | Dokmai N, Kockan C, Zhu K, Wang X, Sahinalp SC, Cho H | Cell systems | 34450045 | Cell Syst | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34450045 |
| Mechanisms for Hiding Sensitive Genotypes with Information-Theoretic Privacy. | Ye F, Cho H, Rouayheb SE | IEEE transactions on information theory | 37283781 | IEEE Trans Inf Theory | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37283781 |
| Secure discovery of genetic relatives across large-scale and distributed genomic data sets. | Hong MM, Froelicher D, Magner R, Popic V, Berger B, Cho H | Genome research | 39111815 | Genome Res | 2024 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/39111815 |
| Peptidomimetic Oligomers Targeting Membrane Phosphatidylserine Exhibit Broad Antiviral Activity. | Tate PM, Mastrodomenico V, Cunha C, McClure J, Barron AE, Diamond G, Mounce BC, Kirshenbaum K | ACS infectious diseases | 37530426 | ACS Infect Dis | 2023 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/37530426 |
| A Bionic Hand for Semi-Autonomous Fragile Object Manipulation via Proximity and Pressure Sensors. | Hansen TC, Trout MA, Segil JL, Warren DJ, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892591 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34892591 |
| Electromyographically controlled prosthetic wrist improves dexterity and reduces compensatory movements without added cognitive load. | Olsen CD, Olsen NR, Stone ES, Tully TN, Paskett MD, Teramoto M, Clark GA, George JA | Scientific reports | 39370497 | Sci Rep | 2024 Oct 6 | https://www.ncbi.nlm.nih.gov/pubmed/39370497 |
| A portable, programmable, multichannel stimulator with high compliance voltage for noninvasive neural stimulation of motor and sensory nerves in humans. | Trout MA, Harrison AT, Brinton MR, George JA | Scientific reports | 36859464 | Sci Rep | 2023 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/36859464 |
| Enhancing neuroprosthesis calibration: the advantage of integrating prior training over exclusive use of new data. | Thomson CJ, Tully TN, Stone ES, Morrell CB, Scheme EJ, Warren DJ, Hutchinson DT, Clark GA, George JA | Journal of neural engineering | 39569866 | J Neural Eng | 2024 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/39569866 |
| Simultaneous and Proportional Myoelectric Control of Multiple Degrees of Freedom in Individuals With Chronic Hemiparesis. | Thomson CJ, Caden Hamrick W, Travis JW, Adkins MD, Maitre PP, Edgely SR, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 40811192 | IEEE Trans Neural Syst Rehabil Eng | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40811192 |
| A Recurrent Neural Network Provides Stable Across-Day Prosthetic Control for a Human Amputee with Implanted Intramuscular Electromyographic Recording Leads. | Thomson CJ, Clark GA, George JA | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 34892525 | Annu Int Conf IEEE Eng Med Biol Soc | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34892525 |
| A Multi-User Transradial Functional-Test Socket for Validation of New Myoelectric Prosthetic Control Strategies. | Hansen TC, Citterman AR, Stone ES, Tully TN, Baschuk CM, Duncan CC, George JA | Frontiers in neurorobotics | 35783364 | Front Neurorobot | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35783364 |
| Validity and Impact of Methods for Collecting Training Data for Myoelectric Prosthetic Control Algorithms. | Tully TN, Thomson CJ, Clark GA, George JA | IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society | 38739519 | IEEE Trans Neural Syst Rehabil Eng | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38739519 |
| Proportional myoelectric control of a virtual bionic arm in participants with hemiparesis, muscle spasticity, and impaired range of motion. | Thomson CJ, Mino FR, Lopez DR, Maitre PP, Edgley SR, George JA | Journal of neuroengineering and rehabilitation | 39707399 | J Neuroeng Rehabil | 2024 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/39707399 |
| Understanding local plant extinctions before it is too late: bridging evolutionary genomics with global ecology. | Exposito-Alonso M | The New phytologist | 36604850 | New Phytol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36604850 |
| Uncovering natural variation in root system architecture and growth dynamics using a robotics-assisted phenomics platform. | LaRue T, Lindner H, Srinivas A, Exposito-Alonso M, Lobet G, Dinneny JR | eLife | 36047575 | Elife | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/36047575 |
| Mutation bias reflects natural selection in Arabidopsis thaliana. | Monroe JG, Srikant T, Carbonell-Bejerano P, Becker C, Lensink M, Exposito-Alonso M, Klein M, Hildebrandt J, Neumann M, Kliebenstein D, Weng ML, Imbert E, Ågren J, Rutter MT, Fenster CB, Weigel D | Nature | 35022609 | Nature | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35022609 |
| Ecological trade-offs drive phenotypic and genetic differentiation of Arabidopsis thaliana in Europe. | Bastias CC, Estarague A, Vile D, Gaignon E, Lee CR, Exposito-Alonso M, Violle C, Vasseur F | Nature communications | 38890286 | Nat Commun | 2024 Jun 18 | https://www.ncbi.nlm.nih.gov/pubmed/38890286 |
| Large future genetic diversity losses are predicted even with habitat protection. | Mualim KS, Spence JP, Weiß C, Selmoni O, Lin M, Exposito-Alonso M | bioRxiv : the preprint server for biology | 39484505 | bioRxiv | 2025 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/39484505 |
| Genetic diversity loss in the Anthropocene. | Exposito-Alonso M, Booker TR, Czech L, Gillespie L, Hateley S, Kyriazis CC, Lang PLM, Leventhal L, Nogues-Bravo D, Pagowski V, Ruffley M, Spence JP, Toro Arana SE, Weiß CL, Zess E | Science (New York, N.Y.) | 36137047 | Science | 2022 Sep 23 | https://www.ncbi.nlm.nih.gov/pubmed/36137047 |
| A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. | Dorone Y, Boeynaems S, Flores E, Jin B, Hateley S, Bossi F, Lazarus E, Pennington JG, Michiels E, De Decker M, Vints K, Baatsen P, Bassel GW, Otegui MS, Holehouse AS, Exposito-Alonso M, Sukenik S, Gitler AD, Rhee SY | Cell | 34233164 | Cell | 2021 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/34233164 |
| Deep learning models map rapid plant species changes from citizen science and remote sensing data. | Gillespie LE, Ruffley M, Exposito-Alonso M | Proceedings of the National Academy of Sciences of the United States of America | 39236239 | Proc Natl Acad Sci U S A | 2024 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/39236239 |
| Global coral genomic vulnerability explains recent reef losses. | Selmoni O, Cleves PA, Exposito-Alonso M | bioRxiv : the preprint server for biology | 40832279 | bioRxiv | 2025 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/40832279 |
| Century-long timelines of herbarium genomes predict plant stomatal response to climate change. | Lang PLM, Erberich JM, Lopez L, Weiß CL, Amador G, Fung HF, Latorre SM, Lasky JR, Burbano HA, Expósito-Alonso M, Bergmann DC | Nature ecology & evolution | 39117952 | Nat Ecol Evol | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39117952 |
| grenepipe: a flexible, scalable and reproducible pipeline to automate variant calling from sequence reads. | Czech L, Exposito-Alonso M | Bioinformatics (Oxford, England) | 36053180 | Bioinformatics | 2022 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/36053180 |
| grenedalf: population genetic statistics for the next generation of pool sequencing. | Czech L, Spence JP, Expósito-Alonso M | Bioinformatics (Oxford, England) | 39185959 | Bioinformatics | 2024 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/39185959 |
| Rapid adaptation and extinction across climates in synchronized outdoor evolution experiments of Arabidopsis thaliana. | Wu X, Bellagio T, Peng Y, Czech L, Lin M, Lang P, Epstein R, Abdelaziz M, Alexander J, Caton-Darby M, Alonso-Blanco C, Andersen HL, Berbel M, Bergelson J, Burghardt L, Delker C, Dimitrakopoulos PG, Donohue K, Durka W, Escribano-Avila G, Franks SJ, Fritschi FB, Galanidis A, Garcia-Fernández A, García-Muñoz A, Hamann E, Herber M, Hutt A, Iriondo JM, Juenger TE, Keller S, Koehl K, Korte A, Korte P, Kuschera A, Lara-Romero C, Leventhal L, Maag D, Marcer A, March-Salas M, de Meaux J, Méndez-Vigo B, Morente-López J, Morton TC, Münzbergova Z, Muola A, Pärtel M, Picó FX, Quarles-Chidyagwai B, Quint M, Reichelt N, Rudak A, Schmitt J, Seifan M, Snoek BL, Stam R, Stinchcombe JR, Stift M, Taylor MA, Tiffin P, Till-Bottraud I, Traveset A, Valay JG, van Zanten M, Vandvik V, Violle C, Wódkiewicz M, Weigel D, Bossdorf O, Colautti R, Vasseur F, Scheepens JF, Exposito-Alonso M | bioRxiv : the preprint server for biology | 40501611 | bioRxiv | 2025 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/40501611 |
| Surface Lattice Plasmon Resonances by Direct In Situ Substrate Growth of Gold Nanoparticles in Ordered Arrays. | Vinnacombe-Willson GA, Conti Y, Jonas SJ, Weiss PS, Mihi A, Scarabelli L | Advanced materials (Deerfield Beach, Fla.) | 35903851 | Adv Mater | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35903851 |
| In Situ Shape Control of Thermoplasmonic Gold Nanostars on Oxide Substrates for Hyperthermia-Mediated Cell Detachment. | Vinnacombe-Willson GA, Chiang N, Scarabelli L, Hu Y, Heidenreich LK, Li X, Gong Y, Inouye DT, Fisher TS, Weiss PS, Jonas SJ | ACS central science | 33274287 | ACS Cent Sci | 2020 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/33274287 |
| Lipid Bicelle Micropatterning Using Chemical Lift-Off Lithography. | Belling JN, Cheung KM, Jackman JA, Sut TN, Allen M, Park JH, Jonas SJ, Cho NJ, Weiss PS | ACS applied materials & interfaces | 32092250 | ACS Appl Mater Interfaces | 2020 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/32092250 |
| Supramolecular nanosubstrate-mediated delivery system enables CRISPR-Cas9 knockin of hemoglobin beta gene for hemoglobinopathies. | Yang P, Chou SJ, Li J, Hui W, Liu W, Sun N, Zhang RY, Zhu Y, Tsai ML, Lai HI, Smalley M, Zhang X, Chen J, Romero Z, Liu D, Ke Z, Zou C, Lee CF, Jonas SJ, Ban Q, Weiss PS, Kohn DB, Chen K, Chiou SH, Tseng HR | Science advances | 33097539 | Sci Adv | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33097539 |
| Fluorinated Silane-Modified Filtroporation Devices Enable Gene Knockout in Human Hematopoietic Stem and Progenitor Cells. | Frost IM, Mendoza AM, Chiou TT, Kim P, Aizenberg J, Kohn DB, De Oliveira SN, Weiss PS, Jonas SJ | ACS applied materials & interfaces | 37616579 | ACS Appl Mater Interfaces | 2023 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/37616579 |
| Exploring the Bottom-Up Growth of Anisotropic Gold Nanoparticles from Substrate-Bound Seeds in Microfluidic Reactors. | Vinnacombe-Willson GA, Lee JK, Chiang N, Scarabelli L, Yue S, Foley R, Frost I, Weiss PS, Jonas SJ | ACS applied nano materials | 37152920 | ACS Appl Nano Mater | 2023 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/37152920 |
| Mixed-dimensional MXene-hydrogel heterostructures for electronic skin sensors with ultrabroad working range. | Cai Y, Shen J, Yang CW, Wan Y, Tang HL, Aljarb AA, Chen C, Fu JH, Wei X, Huang KW, Han Y, Jonas SJ, Dong X, Tung V | Science advances | 33246950 | Sci Adv | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33246950 |
| Dual Supramolecular Nanoparticle Vectors Enable CRISPR/Cas9-Mediated Knockin of Retinoschisin 1 Gene-A Potential Nonviral Therapeutic Solution for X-Linked Juvenile Retinoschisis. | Chou SJ, Yang P, Ban Q, Yang YP, Wang ML, Chien CS, Chen SJ, Sun N, Zhu Y, Liu H, Hui W, Lin TC, Wang F, Zhang RY, Nguyen VQ, Liu W, Chen M, Jonas SJ, Weiss PS, Tseng HR, Chiou SH | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 32440478 | Adv Sci (Weinh) | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32440478 |
| Acoustofluidics-Based Intracellular Nanoparticle Delivery. | Li Z, Tian Z, Belling JN, Rich JT, Zhu H, Ma Z, Bachman H, Shen L, Liang Y, Qi X, Heidenreich LK, Gong Y, Yang S, Zhang W, Zhang P, Fu Y, Ying Y, Jonas SJ, Li Y, Weiss PS, Huang TJ | Engineering (Beijing, China) | 40330125 | Engineering (Beijing) | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/40330125 |
| Self-Powered Programming of Fibroblasts into Neurons via a Scalable Magnetoelastic Generator Array. | Libanori A, Soto J, Xu J, Song Y, Zarubova J, Tat T, Xiao X, Yue SZ, Jonas SJ, Li S, Chen J | Advanced materials (Deerfield Beach, Fla.) | 36468617 | Adv Mater | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36468617 |
| Cold atmospheric plasma for addressing the COVID-19 pandemic. | Chen Z, Bai F, Jonas SJ, Wirz RE | Plasma processes and polymers (Print) | 35574246 | Plasma Process Polym | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35574246 |
| Supramolecular Nanosubstrate-Mediated Delivery for CRISPR/Cas9 Gene Disruption and Deletion. | Ban Q, Yang P, Chou SJ, Qiao L, Xia H, Xue J, Wang F, Xu X, Sun N, Zhang RY, Zhang C, Lee A, Liu W, Lin TY, Ko YL, Antovski P, Zhang X, Chiou SH, Lee CF, Hui W, Liu D, Jonas SJ, Weiss PS, Tseng HR | Small (Weinheim an der Bergstrasse, Germany) | 34105245 | Small | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34105245 |
| Lipid-Bicelle-Coated Microfluidics for Intracellular Delivery with Reduced Fouling. | Belling JN, Heidenreich LK, Park JH, Kawakami LM, Takahashi J, Frost IM, Gong Y, Young TD, Jackman JA, Jonas SJ, Cho NJ, Weiss PS | ACS applied materials & interfaces | 32940030 | ACS Appl Mater Interfaces | 2020 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/32940030 |
| Acoustofluidic sonoporation for gene delivery to human hematopoietic stem and progenitor cells. | Belling JN, Heidenreich LK, Tian Z, Mendoza AM, Chiou TT, Gong Y, Chen NY, Young TD, Wattanatorn N, Park JH, Scarabelli L, Chiang N, Takahashi J, Young SG, Stieg AZ, De Oliveira S, Huang TJ, Weiss PS, Jonas SJ | Proceedings of the National Academy of Sciences of the United States of America | 32358194 | Proc Natl Acad Sci U S A | 2020 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/32358194 |
| Delivering the CRISPR/Cas9 system for engineering gene therapies: Recent cargo and delivery approaches for clinical translation. | Foley RA, Sims RA, Duggan EC, Olmedo JK, Ma R, Jonas SJ | Frontiers in bioengineering and biotechnology | 36225598 | Front Bioeng Biotechnol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36225598 |
| Photothermal Intracellular Delivery Using Gold Nanodisk Arrays. | Zhao C, Man T, Xu X, Yang Q, Liu W, Jonas SJ, Teitell MA, Chiou PY, Weiss PS | ACS materials letters | 34708213 | ACS Mater Lett | 2020 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34708213 |
| Large-Scale Soft-Lithographic Patterning of Plasmonic Nanoparticles. | Chiang N, Scarabelli L, Vinnacombe-Willson GA, Pérez LA, Dore C, Mihi A, Jonas SJ, Weiss PS | ACS materials letters | 34337418 | ACS Mater Lett | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/34337418 |
| Pathogenic ATM Mutations in Cancer and a Genetic Basis for Radiotherapeutic Efficacy. | Pitter KL, Casey DL, Lu YC, Hannum M, Zhang Z, Song X, Pecorari I, McMillan B, Ma J, Samstein RM, Pei IX, Khan AJ, Braunstein LZ, Morris LGT, Barker CA, Rimner A, Alektiar KM, Romesser PB, Crane CH, Yahalom J, Zelefsky MJ, Scher HI, Bernstein JL, Mandelker DL, Weigelt B, Reis-Filho JS, Lee NY, Powell SN, Chan TA, Riaz N, Setton J | Journal of the National Cancer Institute | 32726432 | J Natl Cancer Inst | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/32726432 |
| Functional landscapes of POLE and POLD1 mutations in checkpoint blockade-dependent antitumor immunity. | Ma X, Riaz N, Samstein RM, Lee M, Makarov V, Valero C, Chowell D, Kuo F, Hoen D, Fitzgerald CWR, Jiang H, Alektiar J, Alban TJ, Juric I, Parthasarathy PB, Zhao Y, Sabio EY, Verma R, Srivastava RM, Vuong L, Yang W, Zhang X, Wang J, Chu LK, Wang SL, Kelly DW, Pei X, Chen J, Yaeger R, Zamarin D, Zehir A, Gönen M, Morris LGT, Chan TA | Nature genetics | 35817971 | Nat Genet | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35817971 |
| Improved prediction of immune checkpoint blockade efficacy across multiple cancer types. | Chowell D, Yoo SK, Valero C, Pastore A, Krishna C, Lee M, Hoen D, Shi H, Kelly DW, Patel N, Makarov V, Ma X, Vuong L, Sabio EY, Weiss K, Kuo F, Lenz TL, Samstein RM, Riaz N, Adusumilli PS, Balachandran VP, Plitas G, Ari Hakimi A, Abdel-Wahab O, Shoushtari AN, Postow MA, Motzer RJ, Ladanyi M, Zehir A, Berger MF, Gönen M, Morris LGT, Weinhold N, Chan TA | Nature biotechnology | 34725502 | Nat Biotechnol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34725502 |
| Immunology of COVID-19: Current State of the Science. | Vabret N, Britton GJ, Gruber C, Hegde S, Kim J, Kuksin M, Levantovsky R, Malle L, Moreira A, Park MD, Pia L, Risson E, Saffern M, Salomé B, Esai Selvan M, Spindler MP, Tan J, van der Heide V, Gregory JK, Alexandropoulos K, Bhardwaj N, Brown BD, Greenbaum B, Gümüş ZH, Homann D, Horowitz A, Kamphorst AO, Curotto de Lafaille MA, Mehandru S, Merad M, Samstein RM, Sinai Immunology Review Project | Immunity | 32505227 | Immunity | 2020 Jun 16 | https://www.ncbi.nlm.nih.gov/pubmed/32505227 |
| Shared Immunogenic Poly-Epitope Frameshift Mutations in Microsatellite Unstable Tumors. | Roudko V, Bozkus CC, Orfanelli T, McClain CB, Carr C, O'Donnell T, Chakraborty L, Samstein R, Huang KL, Blank SV, Greenbaum B, Bhardwaj N | Cell | 33259803 | Cell | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/33259803 |
| Mutations in BRCA1 and BRCA2 differentially affect the tumor microenvironment and response to checkpoint blockade immunotherapy. | Samstein RM, Krishna C, Ma X, Pei X, Lee KW, Makarov V, Kuo F, Chung J, Srivastava RM, Purohit TA, Hoen DR, Mandal R, Setton J, Wu W, Shah R, Qeriqi B, Chang Q, Kendall S, Braunstein L, Weigelt B, Blecua Carrillo Albornoz P, Morris LGT, Mandelker DL, Reis-Filho JS, de Stanchina E, Powell SN, Chan TA, Riaz N | Nature cancer | 33834176 | Nat Cancer | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33834176 |
| An immunogenetic basis for lung cancer risk. | Krishna C, Tervi A, Saffern M, Wilson EA, Yoo SK, Mars N, Roudko V, Cho BA, Jones SE, Vaninov N, Selvan ME, Gümüş ZH, FinnGen§, Lenz TL, Merad M, Boffetta P, Martínez-Jiménez F, Ollila HM, Samstein RM, Chowell D | Science (New York, N.Y.) | 38386728 | Science | 2024 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/38386728 |
| Tumor mutational burden as a predictive biomarker for checkpoint inhibitor immunotherapy. | Lee M, Samstein RM, Valero C, Chan TA, Morris LGT | Human vaccines & immunotherapeutics | 31361563 | Hum Vaccin Immunother | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/31361563 |
| Acoustic reflector-enabled forward-viewing ultrasound image-guided access. | Tang Y, Rahaman A, Gonzalez AB, Abouaf I, Malik A, Sorokin I, Zhang H | Journal of medical imaging (Bellingham, Wash.) | 40213618 | J Med Imaging (Bellingham) | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40213618 |
| A-SEE: Active-Sensing End-effector Enabled Probe Self-Normal-Positioning for Robotic Ultrasound Imaging Applications. | Ma X, Kuo WY, Yang K, Rahaman A, Zhang HK | IEEE robotics and automation letters | 37325198 | IEEE Robot Autom Lett | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37325198 |
| Concentric-ring arrays for forward-viewing ultrasound imaging. | Tsumura R, Gao S, Tang Y, Zhang HK | Journal of medical imaging (Bellingham, Wash.) | 36444284 | J Med Imaging (Bellingham) | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36444284 |
| Needle Aligned Ultrasound Image-Guided Access Through Dual-Segment Array. | Rahaman A, Tang Y, Gao S, Ma X, Sorokin I, Zhang HK | IEEE transactions on bio-medical engineering | 37030673 | IEEE Trans Biomed Eng | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37030673 |
| Feasibility of Robot-Assisted Ultrasound Imaging with Force Feedback for Assessment of Thyroid Diseases. | Kaminski JT, Rafatzand K, Zhang HK | Proceedings of SPIE--the International Society for Optical Engineering | 32742057 | Proc SPIE Int Soc Opt Eng | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32742057 |
| Intraoperative laparoscopic photoacoustic image guidance system in the da Vinci surgical system. | Gao S, Wang Y, Ma X, Zhou H, Jiang Y, Yang K, Lu L, Wang S, Nephew BC, Fichera L, Fischer GS, Zhang HK | Biomedical optics express | 37791285 | Biomed Opt Express | 2023 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/37791285 |
| Anatomical Feature-Based Lung Ultrasound Image Quality Assessment Using Deep Convolutional Neural Network. | Ravishankar SM, Tsumura R, Hardin JW, Hoffmann B, Zhang Z, Zhang HK | IEEE International Ultrasonics Symposium : [proceedings]. IEEE International Ultrasonics Symposium | 35966447 | IEEE Int Ultrason Symp | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35966447 |
| Simultaneous Estimation of Hand Configurations and Finger Joint Angles Using Forearm Ultrasound. | Bimbraw K, Nycz CJ, Schueler M, Zhang Z, Zhang HK | IEEE transactions on medical robotics and bionics | 40511365 | IEEE Trans Med Robot Bionics | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40511365 |
| Intraoperative Ablation Control Based on Real-Time Necrosis Monitoring Feedback: Numerical Evaluation. | Murakami R, Mori S, Zhang HK | Annals of biomedical engineering | 39133389 | Ann Biomed Eng | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39133389 |
| Deep Loss Convexification for Learning Iterative Models. | Zhang Z, Shao Y, Zhang Y, Lin F, Zhang H, Rundensteiner E | IEEE transactions on pattern analysis and machine intelligence | 40030446 | IEEE Trans Pattern Anal Mach Intell | 2024 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/40030446 |
| Large Area Kidney Imaging for Pre-transplant Evaluation using Real-Time Robotic Optical Coherence Tomography. | Ma X, Moradi M, Ma X, Tang Q, Levi M, Chen Y, Zhang HK | Research square | 37886456 | Res Sq | 2023 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/37886456 |
| An economic photoacoustic imaging platform using automatic laser synchronization and inverse beamforming. | Wu Y, Zhang HK, Kang J, Boctor EM | Ultrasonics | 32105781 | Ultrasonics | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32105781 |
| Miniaturized side-firing intracardiac photoacoustic imaging catheter for monitoring radiofrequency ablation. | Gao S, Wang Y, Murakami R, Ashikaga H, Kim YH, Mehrmohammadi M, Halperin HR, Zhang HK | Scientific reports | 40394278 | Sci Rep | 2025 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/40394278 |
| Ring-arrayed Forward-viewing Ultrasound Imaging System: A Feasibility Study. | Tsumura R, Vang DP, Hata N, Zhang HK | Proceedings of SPIE--the International Society for Optical Engineering | 32782420 | Proc SPIE Int Soc Opt Eng | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32782420 |
| Laparoscopic Photoacoustic Imaging System Based on Side-Illumination Diffusing Fibers. | Gao S, Jiang Y, Li M, Wang Y, Shen Y, Flegal MC, Nephew BC, Fischer GS, Liu Y, Fichera L, Zhang HK | IEEE transactions on bio-medical engineering | 37224375 | IEEE Trans Biomed Eng | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37224375 |
| Tele-Operative Low-Cost Robotic Lung Ultrasound Scanning Platform for Triage of COVID-19 Patients. | Tsumura R, Hardin JW, Bimbraw K, Grossestreuer AV, Odusanya OS, Zheng Y, Hill JC, Hoffmann B, Soboyejo W, Zhang HK | IEEE robotics and automation letters | 34532570 | IEEE Robot Autom Lett | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34532570 |
| Enhancing boundary detection of radiofrequency ablation lesions through photoacoustic mapping. | Gao S, Liu H, Post A, Jaworski L, Bernard D, John M, Cosgriff-Hernandez E, Razavi M, Zhang HK | Scientific reports | 39169048 | Sci Rep | 2024 Aug 21 | https://www.ncbi.nlm.nih.gov/pubmed/39169048 |
| Large area kidney imaging for pre-transplant evaluation using real-time robotic optical coherence tomography. | Ma X, Moradi M, Ma X, Tang Q, Levi M, Chen Y, Zhang HK | Communications engineering | 39223332 | Commun Eng | 2024 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/39223332 |
| Cardiac-gated spectroscopic photoacoustic imaging for ablation-induced necrotic lesion visualization. | Gao S, Ashikaga H, Suzuki M, Mansi T, Kim YH, Ghesu FC, Kang J, Boctor EM, Halperin HR, Zhang HK | Journal of biophotonics | 39075610 | J Biophotonics | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39075610 |
| Thermal Ablation Therapy Control with Tissue Necrosis-driven Temperature Feedback Enabled by Neural State Space Model with Extended Kalman Filter. | Murakami R, Mori S, Zhang HK | Proceedings of the ... IEEE/RSJ International Conference on Intelligent Robots and Systems. IEEE/RSJ International Conference on Intelligent Robots and Systems | 40487025 | Rep U S | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40487025 |
| Cross-Modality Registration using Bone Surface Pointcloud for Robotic Ultrasound-Guided Spine Surgery. | Ma X, Zhang X, Wang Y, Nycz CJ, Sungarian A, Ji S, Huang X, Zhang HK | Journal of medical robotics research | 40687495 | J Med Robot Res | 2025 Mar-Jun | https://www.ncbi.nlm.nih.gov/pubmed/40687495 |
| Actuated Reflector-Based 3-D Ultrasound Imaging With Synthetic Aperture Focusing. | Tang Y, Tsumura R, Kaminski JT, Zhang HK | IEEE transactions on ultrasonics, ferroelectrics, and frequency control | 35675232 | IEEE Trans Ultrason Ferroelectr Freq Control | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35675232 |
| Autonomous Scanning Target Localization for Robotic Lung Ultrasound Imaging. | Ma X, Zhang Z, Zhang HK | Proceedings of the ... IEEE/RSJ International Conference on Intelligent Robots and Systems. IEEE/RSJ International Conference on Intelligent Robots and Systems | 35965637 | Rep U S | 2021 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/35965637 |
| Acoustic-resolution photoacoustic microscope based on compact and low-cost delta configuration actuator. | Gao S, Tsumura R, Vang DP, Bisland K, Xu K, Tsunoi Y, Zhang HK | Ultrasonics | 34474357 | Ultrasonics | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34474357 |
| Beyond synthetic aperture focusing: deconvolution-based elevation resolution enhancement using simulated point spread function for linear array-based three-dimensional photoacoustic imaging. | Tang Y, Lesniak WG, Gao S, Wu Y, Pomper MG, Zhang HK | Biomedical optics express | 38495705 | Biomed Opt Express | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/38495705 |
| A-SEE2.0: Active-Sensing End-Effector for Robotic Ultrasound Systems with Dense Contact Surface Perception Enabled Probe Orientation Adjustment. | Zhetpissov Y, Ma X, Yang K, Zhang HK | IEEE robotics and automation letters | 40995401 | IEEE Robot Autom Lett | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40995401 |
| Spectroscopic photoacoustic denoising framework using hybrid analytical and data-free learning method. | Lin F, Gao S, Tang Y, Ma X, Murakami R, Zhang Z, Obayemi JD, Soboyejo WO, Zhang HK | Photoacoustics | 40416360 | Photoacoustics | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40416360 |
| Elevational Synthetic Aperture Focusing for Rotated Array-Based Three-Dimensional Ultrasound Imaging. | Murakami R, Wang Y, Tang Y, Tsumura R, Fischer GS, Zhang HK | IEEE access : practical innovations, open solutions | 40260101 | IEEE Access | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40260101 |
| Serial enrichment of heteroduplex DNA using a MutS-magnetic bead system. | Murphy ZR, Shields DA, Evrony GD | Biotechnology journal | 36317440 | Biotechnol J | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36317440 |
| DNA mismatch and damage patterns revealed by single-molecule sequencing. | Liu MH, Costa BM, Bianchini EC, Choi U, Bandler RC, Lassen E, Grońska-Pęski M, Schwing A, Murphy ZR, Rosenkjær D, Picciotto S, Bianchi V, Stengs L, Edwards M, Nunes NM, Loh CA, Truong TK, Brand RE, Pastinen T, Wagner JR, Skytte AB, Tabori U, Shoag JE, Evrony GD | Nature | 38867045 | Nature | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38867045 |
| Applications of Single-Cell DNA Sequencing. | Evrony GD, Hinch AG, Luo C | Annual review of genomics and human genetics | 33722077 | Annu Rev Genomics Hum Genet | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/33722077 |
| High-fidelity, large-scale targeted profiling of microsatellites. | Loh CA, Shields DA, Schwing A, Evrony GD | Genome research | 39013593 | Genome Res | 2024 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/39013593 |
| Single-strand mismatch and damage patterns revealed by single-molecule DNA sequencing. | Liu MH, Costa B, Choi U, Bandler RC, Lassen E, Grońska-Pęski M, Schwing A, Murphy ZR, Rosenkjær D, Picciotto S, Bianchi V, Stengs L, Edwards M, Loh CA, Truong TK, Brand RE, Pastinen T, Wagner JR, Skytte AB, Tabori U, Shoag JE, Evrony GD | bioRxiv : the preprint server for biology | 36824744 | bioRxiv | 2023 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/36824744 |
| Single duplex DNA sequencing with CODEC detects mutations with high sensitivity. | Bae JH, Liu R, Roberts E, Nguyen E, Tabrizi S, Rhoades J, Blewett T, Xiong K, Gydush G, Shea D, An Z, Patel S, Cheng J, Sridhar S, Liu MH, Lassen E, Skytte AB, Grońska-Pęski M, Shoag JE, Evrony GD, Parsons HA, Mayer EL, Makrigiorgos GM, Golub TR, Adalsteinsson VA | Nature genetics | 37106072 | Nat Genet | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37106072 |
| Identification of the pan-allergen tropomyosin from the common bed bug (Cimex lectularius). | Gordon JM, DeVries ZC | Scientific reports | 38538827 | Sci Rep | 2024 Mar 27 | https://www.ncbi.nlm.nih.gov/pubmed/38538827 |
| Spatial distribution of histamine in bed bug-infested homes. | Gordon JM, Santangelo RG, González-Morales MA, Menechella M, Schal C, DeVries ZC | The Science of the total environment | 37001661 | Sci Total Environ | 2023 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/37001661 |
| Human skin triglycerides prevent bed bug (Cimex lectularius L.) arrestment. | Gaire S, DeVries ZC, Mick R, Santangelo RG, Bottillo G, Camera E, Schal C | Scientific reports | 34880281 | Sci Rep | 2021 Dec 8 | https://www.ncbi.nlm.nih.gov/pubmed/34880281 |
| The Role of Antennae in Heat Detection and Feeding Behavior in the Bed Bug (Hemiptera: Cimicidae). | Gaire S, Schal C, Mick R, DeVries Z | Journal of economic entomology | 33128451 | J Econ Entomol | 2020 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/33128451 |
| Histamine excretion in common indoor and hematophagous arthropods. | Principato S, Romero A, Lee CY, Campbell K, Choe DH, Schal C, DeVries Z | Journal of medical entomology | 37619246 | J Med Entomol | 2023 Nov 14 | https://www.ncbi.nlm.nih.gov/pubmed/37619246 |
| Histamine Excretion by the Common Bed Bug (Hemiptera: Cimicidae). | Gaire S, Principato S, Schal C, DeVries ZC | Journal of medical entomology | 36086827 | J Med Entomol | 2022 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/36086827 |
| Effects of aging and cleaning on bed bug (Hemiptera: Cimicidae)-derived histamine. | Principato S, DeVries ZC | Journal of medical entomology | 40221908 | J Med Entomol | 2025 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/40221908 |
| GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control. | Hickey KL, Dickson K, Cogan JZ, Replogle JM, Schoof M, D'Orazio KN, Sinha NK, Hussmann JA, Jost M, Frost A, Green R, Weissman JS, Kostova KK | Molecular cell | 32726578 | Mol Cell | 2020 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/32726578 |
| ZNF574 is a quality control factor for defective ribosome biogenesis intermediates. | Akers JF, LaScola M, Bothe A, Suh H, Jung C, Stolp ZD, Ghosh T, Yan LL, Wang Y, Macurak M, Devan A, McKinney MC, Grismer TS, Reyes AV, Ross EJ, Hu T, Xu SL, Ban N, Kostova KK | Molecular cell | 40328246 | Mol Cell | 2025 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/40328246 |
| Passive immunity for the treatment of influenza: quality not quantity. | Kanjilal S, Mina MJ | The Lancet. Respiratory medicine | 31582359 | Lancet Respir Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31582359 |
| Estimating epidemiologic dynamics from cross-sectional viral load distributions. | Hay JA, Kennedy-Shaffer L, Kanjilal S, Lennon NJ, Gabriel SB, Lipsitch M, Mina MJ | Science (New York, N.Y.) | 34083451 | Science | 2021 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/34083451 |
| Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance. | Larremore DB, Wilder B, Lester E, Shehata S, Burke JM, Hay JA, Milind T, Mina MJ, Parker R | medRxiv : the preprint server for health sciences | 32607516 | medRxiv | 2020 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/32607516 |
| A Global lmmunological Observatory to meet a time of pandemics. | Mina MJ, Metcalf CJE, McDermott AB, Douek DC, Farrar J, Grenfell BT | eLife | 32510329 | Elife | 2020 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/32510329 |
| Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data. | De Salazar PM, Lu F, Hay JA, Gómez-Barroso D, Fernández-Navarro P, Martínez EV, Astray-Mochales J, Amillategui R, García-Fulgueiras A, Chirlaque MD, Sánchez-Migallón A, Larrauri A, Sierra MJ, Lipsitch M, Simón F, Santillana M, Hernán MA | PLoS computational biology | 35358171 | PLoS Comput Biol | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35358171 |
| Test sensitivity is secondary to frequency and turnaround time for COVID-19 screening. | Larremore DB, Wilder B, Lester E, Shehata S, Burke JM, Hay JA, Tambe M, Mina MJ, Parker R | Science advances | 33219112 | Sci Adv | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33219112 |
| Estimating epidemiologic dynamics from cross-sectional viral load distributions. | Hay JA, Kennedy-Shaffer L, Kanjilal S, Lennon NJ, Gabriel SB, Lipsitch M, Mina MJ | medRxiv : the preprint server for health sciences | 33594381 | medRxiv | 2021 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/33594381 |
| Using viral load and epidemic dynamics to optimize pooled testing in resource constrained settings. | Cleary B, Hay JA, Blumenstiel B, Harden M, Cipicchio M, Bezney J, Simonton B, Hong D, Senghore M, Sesay AK, Gabriel S, Regev A, Mina MJ | medRxiv : the preprint server for health sciences | 32511487 | medRxiv | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/32511487 |
| Mathematical modeling to inform vaccination strategies and testing approaches for COVID-19 in nursing homes. | Kahn R, Holmdahl I, Reddy S, Jernigan J, Mina MJ, Slayton RB | medRxiv : the preprint server for health sciences | 33688668 | medRxiv | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/33688668 |
| Clarifying the evidence on SARS-CoV-2 antigen rapid tests in public health responses to COVID-19. | Mina MJ, Peto TE, García-Fiñana M, Semple MG, Buchan IE | Lancet (London, England) | 33609444 | Lancet | 2021 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/33609444 |
| Estimating internationally imported cases during the early COVID-19 pandemic. | Menkir TF, Chin T, Hay JA, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina MJ, Lipsitch M, Niehus R | Nature communications | 33436574 | Nat Commun | 2021 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/33436574 |
| Development of at-home sample collection logistics for large-scale seroprevalence studies. | Aatresh AV, Cummings K, Gerstein H, Knight CS, Limberopolous A, Stasi MA, Bedugnis A, Somberg KA, França CT, Mina MJ | PloS one | 34735477 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34735477 |
| Mathematical Modeling to Inform Vaccination Strategies and Testing Approaches for Coronavirus Disease 2019 (COVID-19) in Nursing Homes. | Kahn R, Holmdahl I, Reddy S, Jernigan J, Mina MJ, Slayton RB | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 34086877 | Clin Infect Dis | 2022 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/34086877 |
| To Interpret the SARS-CoV-2 Test, Consider the Cycle Threshold Value. | Tom MR, Mina MJ | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 32435816 | Clin Infect Dis | 2020 Nov 19 | https://www.ncbi.nlm.nih.gov/pubmed/32435816 |
| Comprehensive Profiling of Zika Virus Risk with Natural and Artificial Mitigating Strategies, United States. | Mina MJ, Guterman LB, Allen KE, Omer SB | Emerging infectious diseases | 32043959 | Emerg Infect Dis | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32043959 |
| Antibody testing will enhance the power and accuracy of COVID-19-prevention trials. | Lipsitch M, Kahn R, Mina MJ | Nature medicine | 32341581 | Nat Med | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32341581 |
| Waning immunity and re-emergence of measles and mumps in the vaccine era. | Yang L, Grenfell BT, Mina MJ | Current opinion in virology | 32634672 | Curr Opin Virol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32634672 |
| Measles vaccine immune escape: Should we be concerned? | Yang L, Grenfell BT, Mina MJ | European journal of epidemiology | 31676977 | Eur J Epidemiol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31676977 |
| Assessing the Effects of Measles Virus Infections on Childhood Infectious Disease Mortality in Brazil. | Xia S, Gullickson CC, Metcalf CJE, Grenfell BT, Mina MJ | The Journal of infectious diseases | 35767276 | J Infect Dis | 2022 Dec 28 | https://www.ncbi.nlm.nih.gov/pubmed/35767276 |
| When intuition falters: repeated testing accuracy during an epidemic. | Hay JA, Hellewell J, Qiu X | European journal of epidemiology | 34322830 | Eur J Epidemiol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34322830 |
| Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors. | Shaffer SM, Emert BL, Reyes Hueros RA, Cote C, Harmange G, Schaff DL, Sizemore AE, Gupte R, Torre E, Singh A, Bassett DS, Raj A | Cell | 32735851 | Cell | 2020 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/32735851 |
| Non-genetic differences underlie variability in proliferation among esophageal epithelial clones. | Reyes Hueros RA, Gier RA, Shaffer SM | PLoS computational biology | 39466790 | PLoS Comput Biol | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39466790 |
| Disrupting cellular memory to overcome drug resistance. | Harmange G, Hueros RAR, Schaff DL, Emert B, Saint-Antoine M, Kim LC, Niu Z, Nellore S, Fane ME, Alicea GM, Weeraratna AT, Simon MC, Singh A, Shaffer SM | Nature communications | 37932277 | Nat Commun | 2023 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/37932277 |
| Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages. | Acheampong KK, Schaff DL, Emert BL, Lake J, Reffsin S, Shea EK, Comar CE, Litzky LA, Khurram NA, Linn RL, Feldman M, Weiss SR, Montone KT, Cherry S, Shaffer SM | mBio | 35130722 | mBio | 2021 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/35130722 |
| Intrinsic Properties of the Lymph Node Render It Immunologically Susceptible to Metastasis. | Kahn BM, Ng RWS, Kim IK, Eskandarian C, Chen CO, Huang B, Lucas A, Li L, Maillard I, Stanger BZ | Cancer discovery | 40265527 | Cancer Discov | 2025 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/40265527 |
| Genetic screening for single-cell variability modulators driving therapy resistance. | Torre EA, Arai E, Bayatpour S, Jiang CL, Beck LE, Emert BL, Shaffer SM, Mellis IA, Fane ME, Alicea GM, Budinich KA, Weeraratna AT, Shi J, Raj A | Nature genetics | 33398196 | Nat Genet | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33398196 |
| Clonal differences underlie variable responses to sequential and prolonged treatment. | Schaff DL, Fasse AJ, White PE, Vander Velde RJ, Shaffer SM | Cell systems | 38401539 | Cell Syst | 2024 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/38401539 |
| IGF2BP1/IMP1 Deletion Enhances a Facultative Stem Cell State via Regulation of MAP1LC3B. | Parham LR, Williams PA, Katada K, Nettleford SK, Chatterji P, Acheampong KK, Danan CH, Ma X, Simon LA, Naughton KE, Mizuno R, Karakasheva T, McMillan EA, Whelan KA, Brady DC, Shaffer SM, Hamilton KE | Cellular and molecular gastroenterology and hepatology | 38081361 | Cell Mol Gastroenterol Hepatol | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38081361 |
| Multiplexed detection of SARS-CoV-2 genomic and subgenomic RNA using in situ hybridization. | Acheampong KK, Schaff DL, Emert BL, Lake J, Reffsin S, Shea EK, Comar CE, Litzky LA, Khurram NA, Linn RL, Feldman M, Weiss SR, Montone KT, Cherry S, Shaffer SM | bioRxiv : the preprint server for biology | 34401878 | bioRxiv | 2021 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/34401878 |
| Variability within rare cell states enables multiple paths toward drug resistance. | Emert BL, Cote CJ, Torre EA, Dardani IP, Jiang CL, Jain N, Shaffer SM, Raj A | Nature biotechnology | 33619394 | Nat Biotechnol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33619394 |
| Cancer-associated fibroblasts maintain critical pancreatic cancer cell lipid homeostasis in the tumor microenvironment. | Han X, Burrows M, Kim LC, Xu JP, Vostrejs W, Van Le TN, Poltorack C, Jiang Y, Cukierman E, Stanger BZ, Reiss KA, Shaffer SM, Mesaros C, Keith B, Simon MC | Cell reports | 39535921 | Cell Rep | 2024 Nov 26 | https://www.ncbi.nlm.nih.gov/pubmed/39535921 |
| Integrating mutational and nonmutational mechanisms of acquired therapy resistance within the Darwinian paradigm. | Vander Velde R, Shaffer S, Marusyk A | Trends in cancer | 35307314 | Trends Cancer | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35307314 |
| Clonal cell states link Barrett's esophagus and esophageal adenocarcinoma. | Gier RA, Hueros RAR, Rong J, DeMarshall M, Karakasheva TA, Muir AB, Falk GW, Zhang NR, Shaffer SM | bioRxiv : the preprint server for biology | 36747708 | bioRxiv | 2023 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/36747708 |
| Regulation of synapse density by Pumilio RNA-binding proteins. | Randolph LK, Pauers MM, Martínez JC, Sibener LJ, Zrzavy MA, Sharif NA, Gonzalez TM, Ramachandran KV, Dominguez D, Hengst U | Cell reports | 39298318 | Cell Rep | 2024 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/39298318 |
| Advancements in APOE and dementia research: Highlights from the 2023 AAIC Advancements: APOE conference. | Kloske CM, Belloy ME, Blue EE, Bowman GR, Carrillo MC, Chen X, Chiba-Falek O, Davis AA, Paolo GD, Garretti F, Gate D, Golden LR, Heinecke JW, Herz J, Huang Y, Iadecola C, Johnson LA, Kanekiyo T, Karch CM, Khvorova A, Koppes-den Hertog SJ, Lamb BT, Lawler PE, Guen YL, Litvinchuk A, Liu CC, Mahinrad S, Marcora E, Marino C, Michaelson DM, Miller JJ, Morganti JM, Narayan PS, Naslavsky MS, Oosthoek M, Ramachandran KV, Ramakrishnan A, Raulin AC, Robert A, Saleh RNM, Sexton C, Shah N, Shue F, Sible IJ, Soranno A, Strickland MR, Tcw J, Thierry M, Tsai LH, Tuckey RA, Ulrich JD, van der Kant R, Wang N, Wellington CL, Weninger SC, Yassine HN, Zhao N, Bu G, Goate AM, Holtzman DM | Alzheimer's & dementia : the journal of the Alzheimer's Association | 39031528 | Alzheimers Dement | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39031528 |
| Associations of thrombocytopenia, transaminase elevations, and transfusion with laboratory coagulation tests in women with preeclampsia: a cross-sectional study. | Combs DJ, Gray KJ, Schulman S, Bateman BT | International journal of obstetric anesthesia | 33798794 | Int J Obstet Anesth | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33798794 |
| Human Genetic Variation in F3 and Its Impact on Tissue Factor-Dependent Disease. | Park JK, Brake MA, Schulman S | Seminars in thrombosis and hemostasis | 37201535 | Semin Thromb Hemost | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37201535 |
| The unfolded protein response links ER stress to cancer-associated thrombosis. | Muse O, Patell R, Peters CG, Yang M, El-Darzi E, Schulman S, Falanga A, Marchetti M, Russo L, Zwicker JI, Flaumenhaft R | JCI insight | 37651191 | JCI Insight | 2023 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/37651191 |
| How the tissue factor-VIIa complex keeps two substrates in the loop. | Schulman S | Journal of thrombosis and haemostasis : JTH | 33405385 | J Thromb Haemost | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33405385 |
| TMEM16E regulates endothelial cell procoagulant activity and thrombosis. | Schmaier AA, Anderson PF, Chen SM, El-Darzi E, Aivasovsky I, Kaushik MP, Sack KD, Hartzell HC, Parikh SM, Flaumenhaft R, Schulman S | The Journal of clinical investigation | 36951953 | J Clin Invest | 2023 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/36951953 |
| A coagulation defect arising from heterozygous premature termination of tissue factor. | Schulman S, El-Darzi E, Florido MH, Friesen M, Merrill-Skoloff G, Brake MA, Schuster CR, Lin L, Westrick RJ, Cowan CA, Flaumenhaft R, NIHR BioResource, Ouwehand WH, Peerlinck K, Freson K, Turro E, Furie B | The Journal of clinical investigation | 32663190 | J Clin Invest | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/32663190 |
| Blood natural killer cell deficiency reveals an immunotherapy strategy for atopic dermatitis. | Mack MR, Brestoff JR, Berrien-Elliott MM, Trier AM, Yang TB, McCullen M, Collins PL, Niu H, Bodet ND, Wagner JA, Park E, Xu AZ, Wang F, Chibnall R, Council ML, Heffington C, Kreisel F, Margolis DJ, Sheinbein D, Lovato P, Vivier E, Cella M, Colonna M, Yokoyama WM, Oltz EM, Fehniger TA, Kim BS | Science translational medicine | 32102931 | Sci Transl Med | 2020 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/32102931 |
| Myeloid-specific Asxl2 deletion limits diet-induced obesity by regulating energy expenditure. | Zou W, Rohatgi N, Brestoff JR, Moley JR, Li Y, Williams JW, Alippe Y, Pan H, Pietka TA, Mbalaviele G, Newberry EP, Davidson NO, Dey A, Shoghi KI, Head RD, Wickline SA, Randolph GJ, Abumrad NA, Teitelbaum SL | The Journal of clinical investigation | 32310225 | J Clin Invest | 2020 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/32310225 |
| A systematic review and meta-analysis of obesity and COVID-19 outcomes. | Zhang X, Lewis AM, Moley JR, Brestoff JR | Scientific reports | 33785830 | Sci Rep | 2021 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/33785830 |
| Ablation of Fat Cells in Adult Mice Induces Massive Bone Gain. | Zou W, Rohatgi N, Brestoff JR, Li Y, Barve RA, Tycksen E, Kim Y, Silva MJ, Teitelbaum SL | Cell metabolism | 33027637 | Cell Metab | 2020 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/33027637 |
| Hepatic lipids promote liver metastasis. | Li Y, Su X, Rohatgi N, Zhang Y, Brestoff JR, Shoghi KI, Xu Y, Semenkovich CF, Harris CA, Peterson LL, Weilbaecher KN, Teitelbaum SL, Zou W | JCI insight | 32879136 | JCI Insight | 2020 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/32879136 |
| Coronavirus Disease 2019 Severity in Obese Patients May Be Linked to Viral Load and Immune Response. | Lewis AM, Zhang X, Brestoff JR | The Journal of infectious diseases | 34331761 | J Infect Dis | 2021 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/34331761 |
| The power and potential of mitochondria transfer. | Borcherding N, Brestoff JR | Nature | 37938702 | Nature | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37938702 |
| Multifaceted mitochondrial quality control in brown adipose tissue. | Aquilano K, Zhou B, Brestoff JR, Lettieri-Barbato D | Trends in cell biology | 36272883 | Trends Cell Biol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36272883 |
| Dietary lipids inhibit mitochondria transfer to macrophages to divert adipocyte-derived mitochondria into the blood. | Borcherding N, Jia W, Giwa R, Field RL, Moley JR, Kopecky BJ, Chan MM, Yang BQ, Sabio JM, Walker EC, Osorio O, Bredemeyer AL, Pietka T, Alexander-Brett J, Morley SC, Artyomov MN, Abumrad NA, Schilling J, Lavine K, Crewe C, Brestoff JR | Cell metabolism | 36070756 | Cell Metab | 2022 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/36070756 |
| Ejection of damaged mitochondria and their removal by macrophages ensure efficient thermogenesis in brown adipose tissue. | Rosina M, Ceci V, Turchi R, Chuan L, Borcherding N, Sciarretta F, Sánchez-Díaz M, Tortolici F, Karlinsey K, Chiurchiù V, Fuoco C, Giwa R, Field RL, Audano M, Arena S, Palma A, Riccio F, Shamsi F, Renzone G, Verri M, Crescenzi A, Rizza S, Faienza F, Filomeni G, Kooijman S, Rufini S, de Vries AAF, Scaloni A, Mitro N, Tseng YH, Hidalgo A, Zhou B, Brestoff JR, Aquilano K, Lettieri-Barbato D | Cell metabolism | 35305295 | Cell Metab | 2022 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/35305295 |
| Adipocyte lipin 1 expression associates with human metabolic health and regulates systemic metabolism in mice. | LaPoint A, Singer JM, Ferguson D, Shew TM, Renkemeyer MK, Palacios HH, Field RL, Yerrathota S, Kumari R, Shankaran M, Smith GI, Yoshino J, He M, Patti GJ, Hellerstein MK, Klein S, Brestoff JR, Morris EM, Finck BN, Lutkewitte AJ | The Journal of clinical investigation | 39405118 | J Clin Invest | 2024 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/39405118 |
| Intercellular Mitochondria Transfer to Macrophages Regulates White Adipose Tissue Homeostasis and Is Impaired in Obesity. | Brestoff JR, Wilen CB, Moley JR, Li Y, Zou W, Malvin NP, Rowen MN, Saunders BT, Ma H, Mack MR, Hykes BL Jr, Balce DR, Orvedahl A, Williams JW, Rohatgi N, Wang X, McAllaster MR, Handley SA, Kim BS, Doench JG, Zinselmeyer BH, Diamond MS, Virgin HW, Gelman AE, Teitelbaum SL | Cell metabolism | 33278339 | Cell Metab | 2021 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/33278339 |
| Using information theory to optimize a diagnostic threshold to match physician-ordering practice. | Zaydman MA, Brestoff JR, Jackups R Jr | Journal of biomedical informatics | 33766781 | J Biomed Inform | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33766781 |
| Induction of a torpor-like hypothermic and hypometabolic state in rodents by ultrasound. | Yang Y, Yuan J, Field RL, Ye D, Hu Z, Xu K, Xu L, Gong Y, Yue Y, Kravitz AV, Bruchas MR, Cui J, Brestoff JR, Chen H | Nature metabolism | 37231250 | Nat Metab | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37231250 |
| Lipid-associated macrophages reshape BAT cell identity in obesity. | Sciarretta F, Ninni A, Zaccaria F, Chiurchiù V, Bertola A, Karlinsey K, Jia W, Ceci V, Di Biagio C, Xu Z, Gaudioso F, Tortolici F, Tiberi M, Zhang J, Carotti S, Boudina S, Grumati P, Zhou B, Brestoff JR, Ivanov S, Aquilano K, Lettieri-Barbato D | Cell reports | 38963761 | Cell Rep | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/38963761 |
| Mitochondria Transfer to CD4(+) T Cells May Alleviate Rheumatoid Arthritis by Suppressing Pro-Inflammatory Cytokine Production. | Giwa R, Brestoff JR | Immunometabolism | 35444834 | Immunometabolism | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35444834 |
| Technological features of blast identification in the cerebrospinal fluid: A systematic review of flow cytometry and laboratory haematology methods. | Frater JL, Shirai CL, Brestoff JR | International journal of laboratory hematology | 35785436 | Int J Lab Hematol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35785436 |
| Full spectrum flow cytometry in the clinical laboratory. | Brestoff JR | International journal of laboratory hematology | 37211417 | Int J Lab Hematol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37211417 |
| A guide to studying mitochondria transfer. | Tiash S, Brestoff JR, Crewe C | Nature cell biology | 37853133 | Nat Cell Biol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37853133 |
| A type 2 immune circuit in the stomach controls mammalian adaptation to dietary chitin. | Kim DH, Wang Y, Jung H, Field RL, Zhang X, Liu TC, Ma C, Fraser JS, Brestoff JR, Van Dyken SJ | Science (New York, N.Y.) | 37676935 | Science | 2023 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/37676935 |
| Burning Fat to Fuel EVs. | Crewe C, Brestoff JR | Diabetes | 37862579 | Diabetes | 2023 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/37862579 |
| Empowering Anxious Parents to Manage Child Avoidance Behaviors: Randomized Control Trial of a Single-Session Intervention for Parental Accommodation. | Sung JY, Mumper E, Schleider JL | JMIR mental health | 34255718 | JMIR Ment Health | 2021 Jul 6 | https://www.ncbi.nlm.nih.gov/pubmed/34255718 |
| Evaluating a treatment selection approach for online single-session interventions for adolescent depression. | Ahuvia IL, Mullarkey MC, Sung JY, Fox KR, Schleider JL | Journal of child psychology and psychiatry, and allied disciplines | 37183368 | J Child Psychol Psychiatry | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37183368 |
| Accessibility and Utility of an Electronic Self-Guided Safety Plan for Adolescents. | Methi N, Weeks I, Hunt R, McGuire TC, Rubin A, Decker M, Schleider JL, Wang SB, Fox K | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 39312731 | J Clin Child Adolesc Psychol | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39312731 |
| Sexual Health Education Experiences and Recommendations from the Perspective of LGBTQ+ Youth. | Hobaica S, Szkody E, Sotomayor I, Liao J, Schleider JL | Journal of sex research | 38880957 | J Sex Res | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/38880957 |
| Embracing Scientific Humility and Complexity: Learning "What Works for Whom" in Youth Psychotherapy Research. | Mullarkey MC, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 34096811 | J Clin Child Adolesc Psychol | 2021 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/34096811 |
| Brief Interventions for Self-injurious Thoughts and Behaviors in Young People: A Systematic Review. | Dobias ML, Chen S, Fox KR, Schleider JL | Clinical child and family psychology review | 36715874 | Clin Child Fam Psychol Rev | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36715874 |
| The fundamental need for lived experience perspectives in developing and evaluating psychotherapies. | Schleider JL | Journal of consulting and clinical psychology | 36795434 | J Consult Clin Psychol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36795434 |
| Not niche: eating disorders as an example in the dangers of overspecialisation. | Haynos AF, Egbert AH, Fitzsimmons-Craft EE, Levinson CA, Schleider JL | The British journal of psychiatry : the journal of mental science | 38097370 | Br J Psychiatry | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38097370 |
| Adolescents' beliefs about what symptoms constitute depression: Are more expansive definitions helpful or harmful? | Ahuvia IL, Fox KR, Schleider JL | SSM. Mental health | 38188868 | SSM Ment Health | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/38188868 |
| Longer Single-Session Interventions May Not Be Better: Evidence From Two Randomized Controlled Trials With Online Workers Facing Mental-Health Struggles. | Kaveladze B, Ghosh A, Funkhouser CJ, Schueller SM, Schleider JL | Clinical psychological science : a journal of the Association for Psychological Science | 40843242 | Clin Psychol Sci | 2025 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/40843242 |
| Developing, Deploying, and Evaluating Digital Mental Health Interventions in Spaces of Online Help- and Information-Seeking. | Kruzan KP, Fitzsimmons-Craft EE, Dobias M, Schleider JL, Pratap A | Procedia computer science | 37063642 | Procedia Comput Sci | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/37063642 |
| When is Psychotherapy Brief? Considering Sociodemographic Factors, Problem Complexity, and Problem Type in U.S. Adolescents. | Abel MR, Bianco A, Gilbert R, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 32356677 | J Clin Child Adolesc Psychol | 2022 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/32356677 |
| Loneliness in Gender-Diverse and Sexual Orientation-Diverse Adolescents: Measurement Invariance Analyses and Between-Group Comparisons. | McDanal R, Schleider JL, Fox KR, Eaton NR | Assessment | 34963320 | Assessment | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34963320 |
| Web-Based Single Session Intervention for Perceived Control Over Anxiety During COVID-19: Randomized Controlled Trial. | Mullarkey M, Dobias M, Sung J, Ahuvia I, Shumake J, Beevers C, Schleider J | JMIR mental health | 35230962 | JMIR Ment Health | 2022 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/35230962 |
| Ecological-Systems Contributors to Internalizing Symptoms in a US Sample of Adolescents During the COVID-19 Pandemic. | Thorpe D, Mirhashem R, Shen J, Roulston C, Fox K, Schleider J | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37616119 | J Clin Child Adolesc Psychol | 2025 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/37616119 |
| Realizing the untapped promise of single-session interventions for eating disorders. | Schleider JL, Smith AC, Ahuvia I | The International journal of eating disorders | 36815724 | Int J Eat Disord | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36815724 |
| Linguistic distancing predicts response to a digital single-session intervention for adolescent depression. | Cohen KA, Shroff A, Nook EC, Schleider JL | Behaviour research and therapy | 36323056 | Behav Res Ther | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36323056 |
| Single-Session Interventions Embedded Within Tumblr: Acceptability, Feasibility, and Utility Study. | Dobias ML, Morris RR, Schleider JL | JMIR formative research | 35877163 | JMIR Form Res | 2022 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/35877163 |
| Timing matters in (mis)identifying moderators and mediators of digital interventions for eating disorders: Commentary on McClure et al. (2023). | Schleider JL, Smith AC, Graham AK | The International journal of eating disorders | 38450821 | Int J Eat Disord | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38450821 |
| A randomized controlled trial comparing brief online self-guided interventions for loneliness. | Kaveladze BT, Gastelum SF, Ngo DC, Delacruz P, Cohen KA, Käll A, Andersson G, Schleider JL, Schueller SM | Journal of consulting and clinical psychology | 39325409 | J Consult Clin Psychol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39325409 |
| Future Directions in Single-Session Youth Mental Health Interventions. | Schleider JL, Dobias ML, Sung JY, Mullarkey MC | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 31799863 | J Clin Child Adolesc Psychol | 2020 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/31799863 |
| Leveraging the Strengths of Psychologists With Lived Experience of Psychopathology. | Victor SE, Schleider JL, Ammerman BA, Bradford DE, Devendorf AR, Gruber J, Gunaydin LA, Hallion LS, Kaufman EA, Lewis SP, Stage DL | Perspectives on psychological science : a journal of the Association for Psychological Science | 35748769 | Perspect Psychol Sci | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35748769 |
| Project Body Neutrality: Piloting a digital single-session intervention for adolescent body image and depression. | Smith AC, Ahuvia I, Ito S, Schleider JL | The International journal of eating disorders | 37129116 | Int J Eat Disord | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37129116 |
| A Digital Single-Session Intervention (Project Engage) to Address Fear of Negative Evaluation Among College Students: Pilot Randomized Controlled Trial. | Ghosh A, Cohen KA, Jans L, Busch CA, McDanal R, Yang Y, Cooper KM, Schleider JL | JMIR mental health | 37995114 | JMIR Ment Health | 2023 Nov 23 | https://www.ncbi.nlm.nih.gov/pubmed/37995114 |
| Brief School-Based Interventions Targeting Student Mental Health or Well-Being: A Systematic Review and Meta-Analysis. | Cohen KA, Ito S, Ahuvia IL, Yang Y, Zhang Y, Renshaw TL, Larson M, Cook C, Hill S, Liao J, Rapoport A, Smock A, Yang M, Schleider JL | Clinical child and family psychology review | 38884838 | Clin Child Fam Psychol Rev | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38884838 |
| Retiring, Rethinking, and Reconstructing the Norm of Once-Weekly Psychotherapy. | Schleider JL, Dobias ML, Mullarkey MC, Ollendick T | Administration and policy in mental health | 32989621 | Adm Policy Ment Health | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32989621 |
| Acceptability and Utility of an Open-Access, Online Single-Session Intervention Platform for Adolescent Mental Health. | Schleider JL, Dobias M, Sung J, Mumper E, Mullarkey MC | JMIR mental health | 32602846 | JMIR Ment Health | 2020 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/32602846 |
| Beliefs about depression relate to active and avoidant coping in high-symptom adolescents. | Pinder JB, Ahuvia IL, Chen S, Schleider JL | Journal of affective disorders | 37977300 | J Affect Disord | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/37977300 |
| Structural Correlates of Mental Health Support Access among Sexual Minority Youth of Color during COVID-19. | Roulston C, McKetta S, Price M, Fox KR, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 35259041 | J Clin Child Adolesc Psychol | 2023 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/35259041 |
| A randomized trial of online single-session interventions for adolescent depression during COVID-19. | Schleider JL, Mullarkey MC, Fox KR, Dobias ML, Shroff A, Hart EA, Roulston CA | Nature human behaviour | 34887544 | Nat Hum Behav | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34887544 |
| The impact of COVID-19 on U.S. adolescents: loss of basic needs and engagement in health risk behaviors. | Shroff A, Fassler J, Fox KR, Schleider JL | Current psychology (New Brunswick, N.J.) | 35095242 | Curr Psychol | 2022 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/35095242 |
| Referring Adolescent Primary Care Patients to Single-Session Interventions for Anxiety and Depression: Protocol for a Feasibility Study. | Eyllon M, Dalal M, Jans L, Sotomayor I, Peloquin G, Yon J, Fritz R, Schleider J | JMIR research protocols | 37556202 | JMIR Res Protoc | 2023 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/37556202 |
| Serving the Underserved? Uptake, Effectiveness, and Acceptability of Digital SSIs for Rural American Adolescents. | Szkody E, Chang YW, Schleider JL | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 37931065 | J Clin Child Adolesc Psychol | 2025 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/37931065 |
| Mixed-Methods Examination of Adolescent-Reported Barriers to Accessing Mental Health Services. | Mora Ringle VA, Sung JY, Roulston CA, Schleider JL | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 37804301 | J Adolesc Health | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37804301 |
| Technology Matters: Online, self-help single session interventions could expand current provision, improving early access to help for young people with depression symptoms, including minority groups. | Loades ME, Schleider JL | Child and adolescent mental health | 37415054 | Child Adolesc Ment Health | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37415054 |
| Barriers to Mental Health Support and Recommendations for Improvement From the Perspectives of LGBTQ+ Youth. | Szkody E, Sotomayor I, Hobaica S, Jans L, Lopez C, Pinder J, Schleider JL | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 40817898 | J Adolesc Health | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40817898 |
| Debate: Where to next for universal school-based mental health interventions? Tensions in prevention - To build better school-based programming, we must start with what we know. | Cohen KA, Bruns EJ, Schleider JL | Child and adolescent mental health | 40018868 | Child Adolesc Ment Health | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40018868 |
| Complex Systems Approaches to Diet: A Systematic Review. | Langellier BA, Bilal U, Montes F, Meisel JD, Cardoso LO, Hammond RA | American journal of preventive medicine | 31326011 | Am J Prev Med | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31326011 |
| Health and Health-Related Resources in Newly Designated Federally Qualified Opportunity Zones: United States, 2012-2016. | Hirsch JA, Zhao Y, Bilal U, Neckerman KM, Michael YL | American journal of public health | 31944851 | Am J Public Health | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31944851 |
| Access to and availability of exercise facilities in Madrid: an equity perspective. | Cereijo L, Gullón P, Cebrecos A, Bilal U, Santacruz JA, Badland H, Franco M | International journal of health geographics | 31266518 | Int J Health Geogr | 2019 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/31266518 |
| Economic Insecurity and Deaths of Despair in US Counties. | Knapp EA, Bilal U, Dean LT, Lazo M, Celentano DD | American journal of epidemiology | 31172197 | Am J Epidemiol | 2019 Dec 31 | https://www.ncbi.nlm.nih.gov/pubmed/31172197 |
| Urban scaling of opioid overdose deaths in the USA: a cross-sectional study in three periods between 2005 and 2017. | Mullachery PH, Lankenau S, Diez Roux AV, Li R, Henson RM, Bilal U | BMJ open | 35241464 | BMJ Open | 2022 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/35241464 |
| Potential impacts of policies to reduce purchasing of ultra-processed foods in Mexico at different stages of the social transition: an agent-based modelling approach. | Langellier BA, Stankov I, Hammond RA, Bilal U, Auchincloss AH, Barrientos-Gutierrez T, Cardoso LO, Diez Roux AV | Public health nutrition | 34895382 | Public Health Nutr | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34895382 |
| Schnake-Mahl and Bilal Respond to "Structural Racism and COVID-19 Mortality in the US". | Schnake-Mahl AS, Bilal U | American journal of epidemiology | 33710318 | Am J Epidemiol | 2021 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/33710318 |
| Adaptation and Evaluation of the Nutrition Environment Measures Survey in Stores to Assess Mediterranean Food Environments (NEMS-S-MED). | Martínez-García A, Díez J, Fernández-Escobar C, Trescastro-López EM, Pereyra-Zamora P, Ariza C, Bilal U, Franco M | International journal of environmental research and public health | 32992984 | Int J Environ Res Public Health | 2020 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/32992984 |
| Social disparities in neighborhood flood exposure in 44,698 urban neighborhoods in Latin America. | Kephart JL, Bilal U, Gouveia N, Sarmiento OL, Shingara E, Moreno KR, Bakhtsiyarava M, Rodriguez JP, Ayala S, Carrasco-Escobar G, Roux AVD, SALURBAL Group | Nature cities | 40190693 | Nat Cities | 2025 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/40190693 |
| Understanding the obesity dynamics by socioeconomic status in Colombian and Mexican cities using a system dynamics model. | Meisel JD, Esguerra V, Pérez Ferrer C, Stankov I, Montes F, Tumas N, Bilal U, Valdivia JA, Diez Roux AV, Sarmiento OL | Heliyon | 39605831 | Heliyon | 2024 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/39605831 |
| Social disparities in flood exposure and associations with the urban environment in 44,698 neighborhoods in 276 cities in eight Latin American countries. | Kephart JL, Bilal U, Gouveia N, Sarmiento OL, Shingara E, Moreno KR, Bakhtsiyarava M, Rodriguez JP, Ayala S, Carrasco-Escobar G, Diez Roux AV, SALURBAL-Climate Project | medRxiv : the preprint server for health sciences | 39006415 | medRxiv | 2024 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/39006415 |
| Area-Level Social Vulnerability and Severe COVID-19: A Case-Control Study Using Electronic Health Records from Multiple Health Systems in the Southeastern Pennsylvania Region. | Mullachery PH, Bilal U, Li R, McClure LA | Journal of urban health : bulletin of the New York Academy of Medicine | 38740710 | J Urban Health | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38740710 |
| Court-mandated redistricting and disparities in infant mortality and deaths of despair. | Schnake-Mahl A, Anfuso G, Bilal U, Goldstein ND, Purtle J, Hernandez SM, Eberth JM | BMC public health | 40108583 | BMC Public Health | 2025 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/40108583 |
| Urban social determinants of non-communicable diseases risk factors in Argentina. | Tumas N, Rodríguez López S, Bilal U, Ortigoza AF, Diez Roux AV | Health & place | 34210611 | Health Place | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34210611 |
| [Epidemiologic evidence on the role of hospitality venues in the transmission of COVID-19: A rapid review of the literature]. | Bilal U, Gullón P, Padilla-Bernáldez J | Gaceta sanitaria | 33933322 | Gac Sanit | 2022 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/33933322 |
| Heterogeneity in Disparities in Life Expectancy Across US Metropolitan Areas. | Schnake-Mahl AS, Mullachery PH, Purtle J, Li R, Diez Roux AV, Bilal U | Epidemiology (Cambridge, Mass.) | 36220582 | Epidemiology | 2022 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/36220582 |
| Socioeconomic deprivation and changes in the retail food environment of Mexico from 2010 to 2020. | Ramírez-Toscano Y, Pérez-Ferrer C, Bilal U, Auchincloss AH, Barrientos-Gutierrez T | Health & place | 35932595 | Health Place | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35932595 |
| The effect of population mobility on COVID-19 incidence in 314 Latin American cities: a longitudinal ecological study with mobile phone location data. | Kephart JL, Delclòs-Alió X, Rodríguez DA, Sarmiento OL, Barrientos-Gutiérrez T, Ramirez-Zea M, Quistberg DA, Bilal U, Diez Roux AV | The Lancet. Digital health | 34456179 | Lancet Digit Health | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34456179 |
| Accessibility and availability of alcohol outlets around schools: An ecological study in the city of Madrid, Spain, according to socioeconomic area-level. | Martín-Turrero I, Valiente R, Molina-de la Fuente I, Bilal U, Lazo M, Sureda X | Environmental research | 34774513 | Environ Res | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34774513 |
| The Impact of Keeping Indoor Dining Closed on COVID-19 Rates Among Large US Cities: A Quasi-Experimental Design. | Schnake-Mahl AS, O'Leary G, Mullachery PH, Vaidya V, Connor G, Rollins H, Kolker J, Diez Roux AV, Bilal U | Epidemiology (Cambridge, Mass.) | 34799474 | Epidemiology | 2022 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/34799474 |
| Scaling of mortality in 742 metropolitan areas of the Americas. | Bilal U, de Castro CP, Alfaro T, Barrientos-Gutierrez T, Barreto ML, Leveau CM, Martinez-Folgar K, Miranda JJ, Montes F, Mullachery P, Pina MF, Rodriguez DA, Dos Santos GF, Andrade RFS, Diez Roux AV | Science advances | 34878846 | Sci Adv | 2021 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/34878846 |
| Measuring variation in infant mortality and deaths of despair by US congressional district in Pennsylvania: a methodological case study. | Schnake-Mahl A, Anfuso G, Goldstein ND, Purtle J, Eberth JM, Ortigoza A, Bilal U | American journal of epidemiology | 38412272 | Am J Epidemiol | 2024 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/38412272 |
| Does Urban Greenspace Reduce Mortality Inequalities Based on Poverty, Race, or Both in Philadelphia, PA? | Schinasi LH, Kondo MC, Edwards J, Clougherty JE, De Roos AJ, Bilal U | Journal of urban health : bulletin of the New York Academy of Medicine | 37563520 | J Urban Health | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37563520 |
| Ambient nitrogen dioxide in 47,187 neighborhoods across 326 cities in eight Latin American countries: population exposures and associations with urban features. | Kephart JL, Gouveia N, Rodriguez DA, Indvik K, Alfaro T, Texcalac JL, Miranda JJ, Bilal U, Roux AVD | medRxiv : the preprint server for health sciences | 37205591 | medRxiv | 2023 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/37205591 |
| Small-molecule tools for YEATS domain proteins. | Erb MA | Current opinion in chemical biology | 37924571 | Curr Opin Chem Biol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37924571 |
| SuFEx-based chemical diversification for the systematic discovery of CRBN molecular glues. | Carter TR, Milosevich N, Dada L, Shaum JB, Barry Sharpless K, Kitamura S, Erb MA | Bioorganic & medicinal chemistry | 38608634 | Bioorg Med Chem | 2024 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/38608634 |
| Cell-Based Ligand Discovery for the ENL YEATS Domain. | Asiaban JN, Milosevich N, Chen E, Bishop TR, Wang J, Zhang Y, Ackerman CJ, Hampton EN, Young TS, Hull MV, Cravatt BF, Erb MA | ACS chemical biology | 32176478 | ACS Chem Biol | 2020 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/32176478 |
| Pharmacological Modulation of Transcriptional Coregulators in Cancer. | Bishop TR, Zhang Y, Erb MA | Trends in pharmacological sciences | 31078321 | Trends Pharmacol Sci | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31078321 |
| Acetyl-CoA biosynthesis drives resistance to histone acetyltransferase inhibition. | Bishop TR, Subramanian C, Bilotta EM, Garnar-Wortzel L, Ramos AR, Zhang Y, Asiaban JN, Ott CJ, Rock CO, Erb MA | Nature chemical biology | 37127754 | Nat Chem Biol | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37127754 |
| Redirecting the pioneering function of FOXA1 with covalent small molecules. | Won SJ, Zhang Y, Reinhardt CJ, Hargis LM, MacRae NS, DeMeester KE, Njomen E, Remsberg JR, Melillo B, Cravatt BF, Erb MA | Molecular cell | 39413792 | Mol Cell | 2024 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/39413792 |
| Quiescent Cells Actively Replenish CENP-A Nucleosomes to Maintain Centromere Identity and Proliferative Potential. | Swartz SZ, McKay LS, Su KC, Bury L, Padeganeh A, Maddox PS, Knouse KA, Cheeseman IM | Developmental cell | 31422918 | Dev Cell | 2019 Oct 7 | https://www.ncbi.nlm.nih.gov/pubmed/31422918 |
| Genome-scale CRISPR screening in a single mouse liver. | Keys HR, Knouse KA | Cell genomics | 36643909 | Cell Genom | 2022 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/36643909 |
| Proteome plasticity in response to persistent environmental change. | Domnauer M, Zheng F, Li L, Zhang Y, Chang CE, Unruh JR, Conkright-Fincham J, McCroskey S, Florens L, Zhang Y, Seidel C, Fong B, Schilling B, Sharma R, Ramanathan A, Si K, Zhou C | Molecular cell | 34293321 | Mol Cell | 2021 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/34293321 |
| Nascent mitochondrial proteins initiate the localized condensation of cytosolic protein aggregates on the mitochondrial surface. | Liu Q, Fong B, Yoo S, Unruh JR, Guo F, Yu Z, Chen J, Si K, Li R, Zhou C | Proceedings of the National Academy of Sciences of the United States of America | 37494397 | Proc Natl Acad Sci U S A | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37494397 |
| The yeast replicative aging model. | He C, Zhou C, Kennedy BK | Biochimica et biophysica acta. Molecular basis of disease | 29524633 | Biochim Biophys Acta Mol Basis Dis | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29524633 |
| Tom70-based transcriptional regulation of mitochondrial biogenesis and aging. | Liu Q, Chang CE, Wooldredge AC, Fong B, Kennedy BK, Zhou C | eLife | 35234609 | Elife | 2022 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/35234609 |
| Continuous bioactivity-dependent evolution of an antibiotic biosynthetic pathway. | Johnston CW, Badran AH, Collins JJ | Nature communications | 32826900 | Nat Commun | 2020 Aug 21 | https://www.ncbi.nlm.nih.gov/pubmed/32826900 |
| Efficient genetic code expansion without host genome modifications. | Costello A, Peterson AA, Lanster DL, Li Z, Carver GD, Badran AH | Nature biotechnology | 39261591 | Nat Biotechnol | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39261591 |
| Directed evolution of rRNA improves translation kinetics and recombinant protein yield. | Liu F, Bratulić S, Costello A, Miettinen TP, Badran AH | Nature communications | 34561441 | Nat Commun | 2021 Sep 24 | https://www.ncbi.nlm.nih.gov/pubmed/34561441 |
| Clinically relevant mutations in core metabolic genes confer antibiotic resistance. | Lopatkin AJ, Bening SC, Manson AL, Stokes JM, Kohanski MA, Badran AH, Earl AM, Cheney NJ, Yang JH, Collins JJ | Science (New York, N.Y.) | 33602825 | Science | 2021 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/33602825 |
| A Deep Learning Approach to Antibiotic Discovery. | Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, Church GM, Brown ED, Jaakkola TS, Barzilay R, Collins JJ | Cell | 32084340 | Cell | 2020 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/32084340 |
| Synthetic Biological Circuits within an Orthogonal Central Dogma. | Costello A, Badran AH | Trends in biotechnology | 32586633 | Trends Biotechnol | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32586633 |
| Bacterial translation machinery for deliberate mistranslation of the genetic code. | Vargas-Rodriguez O, Badran AH, Hoffman KS, Chen M, Crnković A, Ding Y, Krieger JR, Westhof E, Söll D, Melnikov S | Proceedings of the National Academy of Sciences of the United States of America | 34413202 | Proc Natl Acad Sci U S A | 2021 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/34413202 |
| Multiplex suppression of four quadruplet codons via tRNA directed evolution. | DeBenedictis EA, Carver GD, Chung CZ, Söll D, Badran AH | Nature communications | 34588441 | Nat Commun | 2021 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/34588441 |
| Natural and engineered precision antibiotics in the context of resistance. | Johnston CW, Badran AH | Current opinion in chemical biology | 35660248 | Curr Opin Chem Biol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35660248 |
| Modern methods for laboratory diversification of biomolecules. | Bratulic S, Badran AH | Current opinion in chemical biology | 29096324 | Curr Opin Chem Biol | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29096324 |
| Orthogonal translation enables heterologous ribosome engineering in E. coli. | Kolber NS, Fattal R, Bratulic S, Carver GD, Badran AH | Nature communications | 33500394 | Nat Commun | 2021 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/33500394 |
| Contact Mapping to Unravel Chromosome Folding. | Ge T, Rosencrance CD, Eagen KP | Trends in biochemical sciences | 31677956 | Trends Biochem Sci | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31677956 |
| Chromatin Hyperacetylation Impacts Chromosome Folding by Forming a Nuclear Subcompartment. | Rosencrance CD, Ammouri HN, Yu Q, Ge T, Rendleman EJ, Marshall SA, Eagen KP | Molecular cell | 32243828 | Mol Cell | 2020 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/32243828 |
| UBR7 acts as a histone chaperone for post-nucleosomal histone H3. | Hogan AK, Sathyan KM, Willis AB, Khurana S, Srivastava S, Zasadzińska E, Lee AS, Bailey AO, Gaynes MN, Huang J, Bodner J, Rosencrance CD, Wong KA, Morgan MA, Eagen KP, Shilatifard A, Foltz DR | The EMBO journal | 34786730 | EMBO J | 2021 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/34786730 |
| Principles of Chromosome Architecture Revealed by Hi-C. | Eagen KP | Trends in biochemical sciences | 29685368 | Trends Biochem Sci | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29685368 |
| BET proteins loop and compartmentalize the 3D genome. | Eagen KP | Nature genetics | 35410382 | Nat Genet | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35410382 |
| The BRD4-NUT Fusion Alone Drives Malignant Transformation of NUT Carcinoma. | Durall RT, Huang J, Wojenski L, Huang Y, Gokhale PC, Leeper BA, Nash JO, Ballester PL, Davidson S, Shlien A, Sotirakis E, Bertaux F, Dubus V, Luo J, Wu CJ, Keskin DB, Eagen KP, Shapiro GI, French CA | Cancer research | 37819236 | Cancer Res | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37819236 |
| EZH2 synergizes with BRD4-NUT to drive NUT carcinoma growth through silencing of key tumor suppressor genes. | Huang Y, Durall RT, Luong NM, Hertzler HJ, Huang J, Gokhale PC, Leeper BA, Persky NS, Root DE, Anekal PV, Montero Llopis PDLM, David CN, Kutok JL, Raimondi A, Saluja K, Luo J, Zahnow CA, Adane B, Stegmaier K, Hawkins CE, Ponne C, Le Q, Shapiro GI, Lemieux ME, Eagen KP, French CA | bioRxiv : the preprint server for biology | 37645799 | bioRxiv | 2023 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/37645799 |
| Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation. | Fang C, Wang Z, Han C, Safgren SL, Helmin KA, Adelman ER, Serafin V, Basso G, Eagen KP, Gaspar-Maia A, Figueroa ME, Singer BD, Ratan A, Ntziachristos P, Zang C | Genome biology | 32933554 | Genome Biol | 2020 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/32933554 |
| Supercharging BRD4 with NUT in carcinoma. | Eagen KP, French CA | Oncogene | 33452461 | Oncogene | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33452461 |
| EZH2 Cooperates with BRD4-NUT to Drive NUT Carcinoma Growth by Silencing Key Tumor Suppressor Genes. | Huang Y, Durall RT, Luong NM, Hertzler HJ, Huang J, Gokhale PC, Leeper BA, Persky NS, Root DE, Anekal PV, Montero Llopis PDLM, David CN, Kutok JL, Raimondi A, Saluja K, Luo J, Zahnow CA, Adane B, Stegmaier K, Hawkins CE, Ponne C, Le Q, Shapiro GI, Lemieux ME, Eagen KP, French CA | Cancer research | 37747726 | Cancer Res | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37747726 |
| Robust decomposition of cell type mixtures in spatial transcriptomics. | Cable DM, Murray E, Zou LS, Goeva A, Macosko EZ, Chen F, Irizarry RA | Nature biotechnology | 33603203 | Nat Biotechnol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33603203 |
| Compressed sensing for highly efficient imaging transcriptomics. | Cleary B, Simonton B, Bezney J, Murray E, Alam S, Sinha A, Habibi E, Marshall J, Lander ES, Chen F, Regev A | Nature biotechnology | 33859401 | Nat Biotechnol | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33859401 |
| Scalable spatial transcriptomics through computational array reconstruction. | Hu C, Borji M, Marrero GJ, Kumar V, Weir JA, Kammula SV, Macosko EZ, Chen F | Nature biotechnology | 40181168 | Nat Biotechnol | 2025 Apr 3 | https://www.ncbi.nlm.nih.gov/pubmed/40181168 |
| Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response. | Liu S, Iorgulescu JB, Li S, Borji M, Barrera-Lopez IA, Shanmugam V, Lyu H, Morriss JW, Garcia ZN, Murray E, Reardon DA, Yoon CH, Braun DA, Livak KJ, Wu CJ, Chen F | Immunity | 36223726 | Immunity | 2022 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/36223726 |
| Cell type-specific inference of differential expression in spatial transcriptomics. | Cable DM, Murray E, Shanmugam V, Zhang S, Zou LS, Diao M, Chen H, Macosko EZ, Irizarry RA, Chen F | Nature methods | 36050488 | Nat Methods | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36050488 |
| In situ genome sequencing resolves DNA sequence and structure in intact biological samples. | Payne AC, Chiang ZD, Reginato PL, Mangiameli SM, Murray EM, Yao CC, Markoulaki S, Earl AS, Labade AS, Jaenisch R, Church GM, Boyden ES, Buenrostro JD, Chen F | Science (New York, N.Y.) | 33384301 | Science | 2021 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/33384301 |
| HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes. | Marshall JL, Doughty BR, Subramanian V, Guckelberger P, Wang Q, Chen LM, Rodriques SG, Zhang K, Fulco CP, Nasser J, Grinkevich EJ, Noel T, Mangiameli S, Bergman DT, Greka A, Lander ES, Chen F, Engreitz JM | Proceedings of the National Academy of Sciences of the United States of America | 33376219 | Proc Natl Acad Sci U S A | 2020 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/33376219 |
| Molecular logic of cellular diversification in the mouse cerebral cortex. | Di Bella DJ, Habibi E, Stickels RR, Scalia G, Brown J, Yadollahpour P, Yang SM, Abbate C, Biancalani T, Macosko EZ, Chen F, Regev A, Arlotta P | Nature | 34163074 | Nature | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34163074 |
| Spatial genomics enables multi-modal study of clonal heterogeneity in tissues. | Zhao T, Chiang ZD, Morriss JW, LaFave LM, Murray EM, Del Priore I, Meli K, Lareau CA, Nadaf NM, Li J, Earl AS, Macosko EZ, Jacks T, Buenrostro JD, Chen F | Nature | 34912115 | Nature | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34912115 |
| Helicase-assisted continuous editing for programmable mutagenesis of endogenous genomes. | Chen XD, Chen Z, Wythes G, Zhang Y, Orr BC, Sun G, Chao YK, Navarro Torres A, Thao K, Vallurupalli M, Sun J, Borji M, Tkacik E, Chen H, Bernstein BE, Chen F | Science (New York, N.Y.) | 39388570 | Science | 2024 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/39388570 |
| Detection of allele-specific expression in spatial transcriptomics with spASE. | Zou LS, Cable DM, Barrera-Lopez IA, Zhao T, Murray E, Aryee MJ, Chen F, Irizarry RA | Genome biology | 38978101 | Genome Biol | 2024 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/38978101 |
| Efficient, continuous mutagenesis in human cells using a pseudo-random DNA editor. | Chen H, Liu S, Padula S, Lesman D, Griswold K, Lin A, Zhao T, Marshall JL, Chen F | Nature biotechnology | 31844291 | Nat Biotechnol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31844291 |
| RNA timestamps identify the age of single molecules in RNA sequencing. | Rodriques SG, Chen LM, Liu S, Zhong ED, Scherrer JR, Boyden ES, Chen F | Nature biotechnology | 33077959 | Nat Biotechnol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33077959 |
| Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. | Mangiameli SM, Chen H, Earl AS, Dobkin JA, Lesman D, Buenrostro JD, Chen F | Nature methods | 37106232 | Nat Methods | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37106232 |
| Programmable eukaryotic protein synthesis with RNA sensors by harnessing ADAR. | Jiang K, Koob J, Chen XD, Krajeski RN, Zhang Y, Volf V, Zhou W, Sgrizzi SR, Villiger L, Gootenberg JS, Chen F, Abudayyeh OO | Nature biotechnology | 36302988 | Nat Biotechnol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36302988 |
| Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2. | Stickels RR, Murray E, Kumar P, Li J, Marshall JL, Di Bella DJ, Arlotta P, Macosko EZ, Chen F | Nature biotechnology | 33288904 | Nat Biotechnol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33288904 |
| Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution. | Rodriques SG, Stickels RR, Goeva A, Martin CA, Murray E, Vanderburg CR, Welch J, Chen LM, Chen F, Macosko EZ | Science (New York, N.Y.) | 30923225 | Science | 2019 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/30923225 |
| Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis. | Sampath Kumar A, Tian L, Bolondi A, Hernández AA, Stickels R, Kretzmer H, Murray E, Wittler L, Walther M, Barakat G, Haut L, Elkabetz Y, Macosko EZ, Guignard L, Chen F, Meissner A | Nature genetics | 37414952 | Nat Genet | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37414952 |
| Dissecting mammalian spermatogenesis using spatial transcriptomics. | Chen H, Murray E, Sinha A, Laumas A, Li J, Lesman D, Nie X, Hotaling J, Guo J, Cairns BR, Macosko EZ, Cheng CY, Chen F | Cell reports | 34731600 | Cell Rep | 2021 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34731600 |
| Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumor growth and metastasis. | Jones MG, Sun D, Min KHJ, Colgan WN, Tian L, Weir JA, Chen VZ, Koblan LW, Yost KE, Mathey-Andrews N, Russell AJC, Stickels RR, Balderrama KS, Rideout WM 3rd, Chang HY, Jacks T, Chen F, Weissman JS, Yosef N, Yang D | bioRxiv : the preprint server for biology | 39484491 | bioRxiv | 2024 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/39484491 |
| Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases. | Weeks EM, Ulirsch JC, Cheng NY, Trippe BL, Fine RS, Miao J, Patwardhan TA, Kanai M, Nasser J, Fulco CP, Tashman KC, Aguet F, Li T, Ordovas-Montanes J, Smillie CS, Biton M, Shalek AK, Ananthakrishnan AN, Xavier RJ, Regev A, Gupta RM, Lage K, Ardlie KG, Hirschhorn JN, Lander ES, Engreitz JM, Finucane HK | Nature genetics | 37443254 | Nat Genet | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37443254 |
| Leveraging supervised learning for functionally informed fine-mapping of cis-eQTLs identifies an additional 20,913 putative causal eQTLs. | Wang QS, Kelley DR, Ulirsch J, Kanai M, Sadhuka S, Cui R, Albors C, Cheng N, Okada Y, Biobank Japan Project, Aguet F, Ardlie KG, MacArthur DG, Finucane HK | Nature communications | 34099641 | Nat Commun | 2021 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/34099641 |
| Improving fine-mapping by modeling infinitesimal effects. | Cui R, Elzur RA, Kanai M, Ulirsch JC, Weissbrod O, Daly MJ, Neale BM, Fan Z, Finucane HK | Nature genetics | 38036779 | Nat Genet | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38036779 |
| Reconciling S-LDSC and LDAK functional enrichment estimates. | Gazal S, Marquez-Luna C, Finucane HK, Price AL | Nature genetics | 31285579 | Nat Genet | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31285579 |
| Misuse of the term 'trans-ethnic' in genomics research. | Kamariza M, Crawford L, Jones D, Finucane H | Nature genetics | 34741159 | Nat Genet | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34741159 |
| Genome-wide pleiotropy analysis of coronary artery disease and pneumonia identifies shared immune pathways. | Yu Z, Zekavat SM, Haidermota S, Bernardo R, MacDonald BT, Libby P, Finucane HK, Natarajan P | Science advances | 35452290 | Sci Adv | 2022 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/35452290 |
| Meta-analysis fine-mapping is often miscalibrated at single-variant resolution. | Kanai M, Elzur R, Zhou W, Global Biobank Meta-analysis Initiative, Daly MJ, Finucane HK | Cell genomics | 36643910 | Cell Genom | 2022 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/36643910 |
| ASXL1 truncating variants in BOS and myeloid leukemia drive shared disruption of Wnt-signaling pathways but have differential isoform usage of RUNX3. | Lin I, Awamleh Z, Sinvhal M, Wan A, Bondhus L, Wei A, Russell BE, Weksberg R, Arboleda VA | BMC medical genomics | 39614348 | BMC Med Genomics | 2024 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/39614348 |
| Prioritizing disease-associated missense variants with chemoproteomic-detected amino acids. | Palafox MF, Boatner L, Wilde BR, Christofk H, Backus KM, Arboleda VA | American journal of human genetics | 40412387 | Am J Hum Genet | 2025 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/40412387 |
| Metabolic reprogramming and epigenetic changes of vital organs in SARS-CoV-2-induced systemic toxicity. | Li S, Ma F, Yokota T, Garcia G Jr, Palermo A, Wang Y, Farrell C, Wang YC, Wu R, Zhou Z, Pan C, Morselli M, Teitell MA, Ryazantsev S, Fishbein GA, Hoeve JT, Arboleda VA, Bloom J, Dillon B, Pellegrini M, Lusis AJ, Graeber TG, Arumugaswami V, Deb A | JCI insight | 33284134 | JCI Insight | 2021 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/33284134 |
| DNA methylation signature associated with Bohring-Opitz syndrome: a new tool for functional classification of variants in ASXL genes. | Awamleh Z, Chater-Diehl E, Choufani S, Wei E, Kianmahd RR, Yu A, Chad L, Costain G, Tan WH, Scherer SW, Arboleda VA, Russell BE, Weksberg R | European journal of human genetics : EJHG | 35361921 | Eur J Hum Genet | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35361921 |
| Lean Principles to Improve Quality in High-Throughput COVID-19 Testing Using SwabSeq: A Barcoded Sequencing-Based Testing Platform. | Jones J, Saul R, Sathe L, Xie J, Marquette D, Arboleda VA | Laboratory medicine | 34436601 | Lab Med | 2022 Jan 6 | https://www.ncbi.nlm.nih.gov/pubmed/34436601 |
| Phenotype-Specific Enrichment of Mendelian Disorder Genes near GWAS Regions across 62 Complex Traits. | Freund MK, Burch KS, Shi H, Mancuso N, Kichaev G, Garske KM, Pan DZ, Miao Z, Mohlke KL, Laakso M, Pajukanta P, Pasaniuc B, Arboleda VA | American journal of human genetics | 30290150 | Am J Hum Genet | 2018 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/30290150 |
| DMRscaler: a scale-aware method to identify regions of differential DNA methylation spanning basepair to multi-megabase features. | Bondhus L, Wei A, Arboleda VA | BMC bioinformatics | 36064314 | BMC Bioinformatics | 2022 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/36064314 |
| KAT6A mutations in Arboleda-Tham syndrome drive epigenetic regulation of posterior HOXC cluster. | Singh M, Spendlove SJ, Wei A, Bondhus LM, Nava AA, de L Vitorino FN, Amano S, Lee J, Echeverria G, Gomez D, Garcia BA, Arboleda VA | Human genetics | 37861717 | Hum Genet | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37861717 |
| KAT6A mutations in Arboleda-Tham syndrome drive epigenetic regulation of posterior HOXC cluster. | Singh M, Spendlove S, Wei A, Bondhus L, Nava A, de L Vitorino FN, Amano S, Lee J, Echeverria G, Gomez D, Garcia BA, Arboleda VA | bioRxiv : the preprint server for biology | 37577627 | bioRxiv | 2023 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/37577627 |
| Increased Frequency of Clonal Hematopoiesis of Indeterminate Potential in Bloom Syndrome Probands and Carriers. | Lin I, Wei A, Gebo TA, Boutros PC, Flanagan M, Kucine N, Cunniff C, Arboleda VA, Chang VY | medRxiv : the preprint server for health sciences | 38370823 | medRxiv | 2024 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/38370823 |
| Lower Severe Acute Respiratory Syndrome Coronavirus 2 Viral Shedding Following Coronavirus Disease 2019 Vaccination Among Healthcare Workers in Los Angeles, California. | Adamson PC, Pfeffer MA, Arboleda VA, Garner OB, de St Maurice A, von Bredow B, Flint J, Kruglyak L, Currier JS | Open forum infectious diseases | 35005055 | Open Forum Infect Dis | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35005055 |
| Electronic health record signatures identify undiagnosed patients with common variable immunodeficiency disease. | Johnson R, Stephens AV, Mester R, Knyazev S, Kohn LA, Freund MK, Bondhus L, Hill BL, Schwarz T, Zaitlen N, Arboleda VA, A Bastarache L, Pasaniuc B, Butte MJ | Science translational medicine | 38691621 | Sci Transl Med | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38691621 |
| Multiomics of Bohring-Opitz syndrome truncating ASXL1 mutations identify canonical and noncanonical Wnt signaling dysregulation. | Lin I, Wei A, Awamleh Z, Singh M, Ning A, Herrera A, REACH Biobank and Registry, Russell BE, Weksberg R, Arboleda VA | JCI insight | 37053013 | JCI Insight | 2023 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/37053013 |
| The omics era: a nexus of untapped potential for Mendelian chromatinopathies. | Nava AA, Arboleda VA | Human genetics | 37115317 | Hum Genet | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37115317 |
| Novel variants in KAT6B spectrum of disorders expand our knowledge of clinical manifestations and molecular mechanisms. | Yabumoto M, Kianmahd J, Singh M, Palafox MF, Wei A, Elliott K, Goodloe DH, Dean SJ, Gooch C, Murray BK, Swartz E, Schrier Vergano SA, Towne MC, Nugent K, Roeder ER, Kresge C, Pletcher BA, Grand K, Graham JM Jr, Gates R, Gomez-Ospina N, Ramanathan S, Clark RD, Glaser K, Benke PJ, Cohen JS, Fatemi A, Mu W, Baranano KW, Madden JA, Gubbels CS, Yu TW, Agrawal PB, Chambers MK, Phornphutkul C, Pugh JA, Tauber KA, Azova S, Smith JR, O'Donnell-Luria A, Medsker H, Srivastava S, Krakow D, Schweitzer DN, Arboleda VA | Molecular genetics & genomic medicine | 34519438 | Mol Genet Genomic Med | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/34519438 |
| Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples. | Bloom JS, Sathe L, Munugala C, Jones EM, Gasperini M, Lubock NB, Yarza F, Thompson EM, Kovary KM, Park J, Marquette D, Kay S, Lucas M, Love T, Sina Booeshaghi A, Brandenberg OF, Guo L, Boocock J, Hochman M, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, Oland G, Choe BJ, Chandrasekaran S, Hilt EE, Butte MJ, Damoiseaux R, Kravit C, Cooper AR, Yin Y, Pachter L, Garner OB, Flint J, Eskin E, Luo C, Kosuri S, Kruglyak L, Arboleda VA | Nature biomedical engineering | 34211145 | Nat Biomed Eng | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34211145 |
| Polygenic risk scores of endo-phenotypes identify the effect of genetic background in congenital heart disease. | Spendlove SJ, Bondhus L, Lluri G, Sul JH, Arboleda VA | HGG advances | 35599848 | HGG Adv | 2022 Jul 14 | https://www.ncbi.nlm.nih.gov/pubmed/35599848 |
| Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing. | Bloom JS, Sathe L, Munugala C, Jones EM, Gasperini M, Lubock NB, Yarza F, Thompson EM, Kovary KM, Park J, Marquette D, Kay S, Lucas M, Love T, Booeshaghi AS, Brandenberg OF, Guo L, Boocock J, Hochman M, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, Oland G, Choe BJ, Chandrasekaran S, Hilt EE, Butte MJ, Damoiseaux R, Kravit C, Cooper AR, Yin Y, Pachter L, Garner OB, Flint J, Eskin E, Luo C, Kosuri S, Kruglyak L, Arboleda VA | medRxiv : the preprint server for health sciences | 32909008 | medRxiv | 2021 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/32909008 |
| From chemoproteomic-detected amino acids to genomic coordinates: insights into precise multi-omic data integration. | Palafox MF, Desai HS, Arboleda VA, Backus KM | Molecular systems biology | 33599394 | Mol Syst Biol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33599394 |
| Identification of novel PIEZO1 variants using prenatal exome sequencing and correlation to ultrasound and autopsy findings of recurrent hydrops fetalis. | Datkhaeva I, Arboleda VA, Senaratne TN, Nikpour G, Meyerson C, Geng Y, Afshar Y, Scibetta E, Goldstein J, Quintero-Rivera F, Crandall BF, Grody WW, Deignan J, Janzen C | American journal of medical genetics. Part A | 30244526 | Am J Med Genet A | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30244526 |
| KAT6A Syndrome: genotype-phenotype correlation in 76 patients with pathogenic KAT6A variants. | Kennedy J, Goudie D, Blair E, Chandler K, Joss S, McKay V, Green A, Armstrong R, Lees M, Kamien B, Hopper B, Tan TY, Yap P, Stark Z, Okamoto N, Miyake N, Matsumoto N, Macnamara E, Murphy JL, McCormick E, Hakonarson H, Falk MJ, Li D, Blackburn P, Klee E, Babovic-Vuksanovic D, Schelley S, Hudgins L, Kant S, Isidor B, Cogne B, Bradbury K, Williams M, Patel C, Heussler H, Duff-Farrier C, Lakeman P, Scurr I, Kini U, Elting M, Reijnders M, Schuurs-Hoeijmakers J, Wafik M, Blomhoff A, Ruivenkamp CAL, Nibbeling E, Dingemans AJM, Douine ED, Nelson SF, DDD Study,, Hempel M, Bierhals T, Lessel D, Johannsen J, Arboleda VA, Newbury-Ecob R | Genetics in medicine : official journal of the American College of Medical Genetics | 30245513 | Genet Med | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30245513 |
| Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative. | Johnson R, Ding Y, Venkateswaran V, Bhattacharya A, Boulier K, Chiu A, Knyazev S, Schwarz T, Freund M, Zhan L, Burch KS, Caggiano C, Hill B, Rakocz N, Balliu B, Denny CT, Sul JH, Zaitlen N, Arboleda VA, Halperin E, Sankararaman S, Butte MJ, UCLA Precision Health Data Discovery Repository Working Group, UCLA Precision Health ATLAS Working Group, Lajonchere C, Geschwind DH, Pasaniuc B | Genome medicine | 36085083 | Genome Med | 2022 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/36085083 |
| Disease risk and healthcare utilization among ancestrally diverse groups in the Los Angeles region. | Caggiano C, Boudaie A, Shemirani R, Mefford J, Petter E, Chiu A, Ercelen D, He R, Tward D, Paul KC, Chang TS, Pasaniuc B, Kenny EE, Shortt JA, Gignoux CR, Balliu B, Arboleda VA, Belbin G, Zaitlen N | Nature medicine | 37464048 | Nat Med | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37464048 |
| Targeted genotyping of variable number tandem repeats with adVNTR. | Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V | Genome research | 30352806 | Genome Res | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/30352806 |
| A reference haplotype panel for genome-wide imputation of short tandem repeats. | Saini S, Mitra I, Mousavi N, Fotsing SF, Gymrek M | Nature communications | 30353011 | Nat Commun | 2018 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/30353011 |
| Missing heritability may be hiding in repeats. | Gymrek M, Goren A | Science (New York, N.Y.) | 34554784 | Science | 2021 Sep 24 | https://www.ncbi.nlm.nih.gov/pubmed/34554784 |
| TRTools: a toolkit for genome-wide analysis of tandem repeats. | Mousavi N, Margoliash J, Pusarla N, Saini S, Yanicky R, Gymrek M | Bioinformatics (Oxford, England) | 32805020 | Bioinformatics | 2021 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/32805020 |
| Profiling the genome-wide landscape of tandem repeat expansions. | Mousavi N, Shleizer-Burko S, Yanicky R, Gymrek M | Nucleic acids research | 31194863 | Nucleic Acids Res | 2019 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/31194863 |
| The impact of short tandem repeat variation on gene expression. | Fotsing SF, Margoliash J, Wang C, Saini S, Yanicky R, Shleizer-Burko S, Goren A, Gymrek M | Nature genetics | 31676866 | Nat Genet | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31676866 |
| Patterns of de novo tandem repeat mutations and their role in autism. | Mitra I, Huang B, Mousavi N, Ma N, Lamkin M, Yanicky R, Shleizer-Burko S, Lohmueller KE, Gymrek M | Nature | 33442040 | Nature | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33442040 |
| Polymorphic short tandem repeats make widespread contributions to blood and serum traits. | Margoliash J, Fuchs S, Li Y, Zhang X, Massarat A, Goren A, Gymrek M | Cell genomics | 38116119 | Cell Genom | 2023 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/38116119 |
| Deep learning predicts the impact of regulatory variants on cell-type-specific enhancers in the brain. | Zheng A, Shen Z, Glass CK, Gymrek M | Bioinformatics advances | 36726730 | Bioinform Adv | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36726730 |
| WebSTR: A Population-wide Database of Short Tandem Repeat Variation in Humans. | Lundström OS, Adriaan Verbiest M, Xia F, Jam HZ, Zlobec I, Anisimova M, Gymrek M | Journal of molecular biology | 37678708 | J Mol Biol | 2023 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/37678708 |
| Development of an In Situ Cancer Vaccine via Combinational Radiation and Bacterial-Membrane-Coated Nanoparticles. | Patel RB, Ye M, Carlson PM, Jaquish A, Zangl L, Ma B, Wang Y, Arthur I, Xie R, Brown RJ, Wang X, Sriramaneni R, Kim K, Gong S, Morris ZS | Advanced materials (Deerfield Beach, Fla.) | 31523868 | Adv Mater | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31523868 |
| Combined innate and adaptive immunotherapy overcomes resistance of immunologically cold syngeneic murine neuroblastoma to checkpoint inhibition. | Voeller J, Erbe AK, Slowinski J, Rasmussen K, Carlson PM, Hoefges A, VandenHeuvel S, Stuckwisch A, Wang X, Gillies SD, Patel RB, Farrel A, Rokita JL, Maris J, Hank JA, Morris ZS, Rakhmilevich AL, Sondel PM | Journal for immunotherapy of cancer | 31810498 | J Immunother Cancer | 2019 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/31810498 |
| Priming and Propagating Anti-tumor Immunity: Focal Hypofractionated Radiation for in Situ Vaccination and Systemic Targeted Radionuclide Theranostics for Immunomodulation of Tumor Microenvironments. | Jagodinsky JC, Morris ZS | Seminars in radiation oncology | 32381297 | Semin Radiat Oncol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32381297 |
| Depth of tumor implantation affects response to in situ vaccination in a syngeneic murine melanoma model. | Carlson PM, Mohan M, Rodriguez M, Subbotin V, Sun CX, Patel RB, Birstler J, Hank JA, Rakhmilevich AL, Morris ZS, Erbe AK, Sondel PM | Journal for immunotherapy of cancer | 33858849 | J Immunother Cancer | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33858849 |
| Temporal analysis of type 1 interferon activation in tumor cells following external beam radiotherapy or targeted radionuclide therapy. | Jagodinsky JC, Jin WJ, Bates AM, Hernandez R, Grudzinski JJ, Marsh IR, Chakravarty I, Arthur IS, Zangl LM, Brown RJ, Nystuen EJ, Emma SE, Kerr C, Carlson PM, Sriramaneni RN, Engle JW, Aluicio-Sarduy E, Barnhart TE, Le T, Kim K, Bednarz BP, Weichert JP, Patel RB, Morris ZS | Theranostics | 33995649 | Theranostics | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33995649 |
| Low-Dose Radiation Potentiates the Propagation of Anti-Tumor Immunity against Melanoma Tumor in the Brain after In Situ Vaccination at a Tumor outside the Brain. | Clark PA, Sriramaneni RN, Bates AM, Jin WJ, Jagodinsky JC, Hernandez R, Le T, Jeffery JJ, Marsh IR, Grudzinski JJ, Aluicio-Sarduy E, Barnhart TE, Anderson BR, Chakravarty I, Arthur IS, Kim K, Engle JW, Bednarz BP, Weichert JP, Morris ZS | Radiation research | 33826741 | Radiat Res | 2021 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/33826741 |
| Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade. | Jagodinsky JC, Vera JM, Jin WJ, Shea AG, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarthy I, Allawi RH, Kim K, Harari PM, Sondel PM, Newton MA, Crittenden MR, Gough MJ, Miller JR, Ong IM, Morris ZS | Science translational medicine | 39292804 | Sci Transl Med | 2024 Sep 18 | https://www.ncbi.nlm.nih.gov/pubmed/39292804 |
| Radiation to all macroscopic sites of tumor permits greater systemic antitumor response to in situ vaccination. | Carlson PM, Patel RB, Birstler J, Rodriquez M, Sun C, Erbe AK, Bates AM, Marsh I, Grudzinski J, Hernandez R, Pieper AA, Feils AS, Rakhmilevich AL, Weichert JP, Bednarz BP, Sondel PM, Morris ZS | Journal for immunotherapy of cancer | 36639155 | J Immunother Cancer | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36639155 |
| Developments in Combining Targeted Radionuclide Therapies and Immunotherapies for Cancer Treatment. | Kerr CP, Grudzinski JJ, Nguyen TP, Hernandez R, Weichert JP, Morris ZS | Pharmaceutics | 36678756 | Pharmaceutics | 2022 Dec 30 | https://www.ncbi.nlm.nih.gov/pubmed/36678756 |
| Tumor-Specific Antibody, Cetuximab, Enhances the In Situ Vaccine Effect of Radiation in Immunologically Cold Head and Neck Squamous Cell Carcinoma. | Jin WJ, Erbe AK, Schwarz CN, Jaquish AA, Anderson BR, Sriramaneni RN, Jagodinsky JC, Bates AM, Clark PA, Le T, Lan KH, Chen Y, Kim K, Morris ZS | Frontiers in immunology | 33281820 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33281820 |
| Multifunctional nanoparticle potentiates the in situ vaccination effect of radiation therapy and enhances response to immune checkpoint blockade. | Zhang Y, Sriramaneni RN, Clark PA, Jagodinsky JC, Ye M, Jin W, Wang Y, Bates A, Kerr CP, Le T, Allawi R, Wang X, Xie R, Havighurst TC, Chakravarty I, Rakhmilevich AL, O'Leary KA, Schuler LA, Sondel PM, Kim K, Gong S, Morris ZS | Nature communications | 35999216 | Nat Commun | 2022 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/35999216 |
| Factors impacting the efficacy of the in-situ vaccine with CpG and OX40 agonist. | Pieper AA, Spiegelman DV, Felder MAR, Feils AS, Tsarovsky NW, Zaborek J, Morris ZS, Erbe AK, Rakhmilevich AL, Sondel PM | Cancer immunology, immunotherapy : CII | 37016127 | Cancer Immunol Immunother | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37016127 |
| MRI-Guided Radiation Therapy. | Lee SL, Hall WA, Morris ZS, Christensen L, Bassetti M | Advances in oncology | 37064601 | Adv Oncol | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/37064601 |
| Local TLR4 stimulation augments in situ vaccination induced via local radiation and anti-CTLA-4 checkpoint blockade through induction of CD8 T-cell independent Th1 polarization. | Jagodinsky JC, Bates AM, Clark PA, Sriramaneni RN, Havighurst TC, Chakravarty I, Nystuen EJ, Kim K, Sondel PM, Jin WJ, Morris ZS | Journal for immunotherapy of cancer | 36192087 | J Immunother Cancer | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36192087 |
| ATM inhibition augments type I interferon response and antitumor T-cell immunity when combined with radiation therapy in murine tumor models. | Jin WJ, Zangl LM, Hyun M, Massoud E, Schroeder K, Alexandridis RA, Morris ZS | Journal for immunotherapy of cancer | 37730275 | J Immunother Cancer | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37730275 |
| In Situ Vaccination Following Intratumoral Injection of IL2 and Poly-l-lysine/Iron Oxide/CpG Nanoparticles to a Radiated Tumor Site. | Zhang Y, Rahman MM, Clark PA, Sriramaneni RN, Havighurst T, Kerr CP, Zhu M, Jones J, Wang X, Kim K, Gong S, Morris ZS | ACS nano | 37216491 | ACS Nano | 2023 Jun 13 | https://www.ncbi.nlm.nih.gov/pubmed/37216491 |
| A multipurpose brachytherapy catheter to enable intratumoral injection. | Jagodinsky JC, Medeiros G, Raj HH, Razuan A, Locsin A, Dempsey TG, Tang B, Chakravarty I, Clark PA, Sriramaneni RN, Jin WJ, Lan KH, Das RK, Miller JR, Suarez-Gonzalez D, Morris ZS | Brachytherapy | 33785280 | Brachytherapy | 2021 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/33785280 |
| In situ Vaccine Plus Checkpoint Blockade Induces Memory Humoral Response. | Baniel CC, Heinze CM, Hoefges A, Sumiec EG, Hank JA, Carlson PM, Jin WJ, Patel RB, Sriramaneni RN, Gillies SD, Erbe AK, Schwarz CN, Pieper AA, Rakhmilevich AL, Sondel PM, Morris ZS | Frontiers in immunology | 32849544 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32849544 |
| Radiation Augments the Local Anti-Tumor Effect of In Situ Vaccine With CpG-Oligodeoxynucleotides and Anti-OX40 in Immunologically Cold Tumor Models. | Pieper AA, Zangl LM, Speigelman DV, Feils AS, Hoefges A, Jagodinsky JC, Felder MA, Tsarovsky NW, Arthur IS, Brown RJ, Birstler J, Le T, Carlson PM, Bates AM, Hank JA, Rakhmilevich AL, Erbe AK, Sondel PM, Patel RB, Morris ZS | Frontiers in immunology | 34868010 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34868010 |
| Low-dose targeted radionuclide therapy renders immunologically cold tumors responsive to immune checkpoint blockade. | Patel RB, Hernandez R, Carlson P, Grudzinski J, Bates AM, Jagodinsky JC, Erbe A, Marsh IR, Arthur I, Aluicio-Sarduy E, Sriramaneni RN, Jin WJ, Massey C, Rakhmilevich AL, Vail D, Engle JW, Le T, Kim K, Bednarz B, Sondel PM, Weichert J, Morris ZS | Science translational medicine | 34261797 | Sci Transl Med | 2021 Jul 14 | https://www.ncbi.nlm.nih.gov/pubmed/34261797 |
| Tumor-Specific Inhibition of In Situ Vaccination by Distant Untreated Tumor Sites. | Morris ZS, Guy EI, Werner LR, Carlson PM, Heinze CM, Kler JS, Busche SM, Jaquish AA, Sriramaneni RN, Carmichael LL, Loibner H, Gillies SD, Korman AJ, Erbe AK, Hank JA, Rakhmilevich AL, Harari PM, Sondel PM | Cancer immunology research | 29748391 | Cancer Immunol Res | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29748391 |
| The Radiobiology of Radiopharmaceuticals. | Morris ZS, Wang AZ, Knox SJ | Seminars in radiation oncology | 33246632 | Semin Radiat Oncol | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33246632 |
| Combination of radiation therapy, bempegaldesleukin, and checkpoint blockade eradicates advanced solid tumors and metastases in mice. | Pieper AA, Rakhmilevich AL, Spiegelman DV, Patel RB, Birstler J, Jin WJ, Carlson PM, Charych DH, Hank JA, Erbe AK, Overwijk WW, Morris ZS, Sondel PM | Journal for immunotherapy of cancer | 34172518 | J Immunother Cancer | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34172518 |
| The Promise of Combining Radiation Therapy With Immunotherapy. | Jagodinsky JC, Harari PM, Morris ZS | International journal of radiation oncology, biology, physics | 32335187 | Int J Radiat Oncol Biol Phys | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32335187 |
| (90)Y-NM600 targeted radionuclide therapy induces immunologic memory in syngeneic models of T-cell Non-Hodgkin's Lymphoma. | Hernandez R, Walker KL, Grudzinski JJ, Aluicio-Sarduy E, Patel R, Zahm CD, Pinchuk AN, Massey CF, Bitton AN, Brown RJ, Sondel PM, Morris ZS, Engle JW, Capitini CM, Weichert JP | Communications biology | 30820474 | Commun Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30820474 |
| In situ vaccination at a peripheral tumor site augments response against melanoma brain metastases. | Clark PA, Sriramaneni RN, Jin WJ, Jagodinsky JC, Bates AM, Jaquish AA, Anderson BR, Le T, Lubin JA, Chakravarty I, Arthur IS, Heinze CM, Guy EI, Kler J, Klar KA, Carlson PM, Kim KM, Kuo JS, Morris ZS | Journal for immunotherapy of cancer | 32690669 | J Immunother Cancer | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32690669 |
| Combination of Bempegaldesleukin and Anti-CTLA-4 Prevents Metastatic Dissemination After Primary Resection or Radiotherapy in a Preclinical Model of Non-Small Cell Lung Cancer. | Bates AM, Brown RJ, Pieper AA, Zangl LM, Arthur I, Carlson PM, Le T, Sosa GA, Clark PA, Sriramaneni RN, Kim K, Patel RB, Morris ZS | Frontiers in oncology | 33937052 | Front Oncol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33937052 |
| Antibody landscape of C57BL/6 mice cured of B78 melanoma via a combined radiation and immunocytokine immunotherapy regimen. | Hoefges A, McIlwain SJ, Erbe AK, Mathers N, Xu A, Melby D, Tetreault K, Le T, Kim K, Pinapati RS, Garcia BH, Patel J, Heck M, Feils AS, Tsarovsky N, Hank JA, Morris ZS, Ong IM, Sondel PM | Frontiers in immunology | 38077403 | Front Immunol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38077403 |
| NK cells propagate T cell immunity following in situ tumor vaccination. | Jin WJ, Jagodinsky JC, Vera JM, Clark PA, Zuleger CL, Erbe AK, Ong IM, Le T, Tetreault K, Berg T, Rakhmilevich AL, Kim K, Newton MA, Albertini MR, Sondel PM, Morris ZS | Cell reports | 38096050 | Cell Rep | 2023 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/38096050 |
| Transcriptional-mediated effects of radiation on the expression of immune susceptibility markers in melanoma. | Werner LR, Kler JS, Gressett MM, Riegert M, Werner LK, Heinze CM, Kern JG, Abbariki M, Erbe AK, Patel RB, Sriramaneni RN, Harari PM, Morris ZS | Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology | 28893414 | Radiother Oncol | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28893414 |
| Combining brachytherapy and immunotherapy to achieve in situ tumor vaccination: A review of cooperative mechanisms and clinical opportunities. | Patel RB, Baniel CC, Sriramaneni RN, Bradley K, Markovina S, Morris ZS | Brachytherapy | 30078541 | Brachytherapy | 2018 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/30078541 |
| Using Radiation Therapy to Prime and Propagate an Anti-tumor Immune Response Against Brain Tumors. | Onate AJ, Clark PA, Morris ZS | Neuromolecular medicine | 34081276 | Neuromolecular Med | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34081276 |
| Optimizing Flow Cytometric Analysis of Immune Cells in Samples Requiring Cryopreservation from Tumor-Bearing Mice. | Carlson PM, Mohan M, Patel RB, Birstler J, Nettenstrom L, Sheerar D, Fox K, Rodriguez M, Hoefges A, Hernandez R, Zahm C, Kim K, McNeel DG, Weichert J, Morris ZS, Sondel PM | Journal of immunology (Baltimore, Md. : 1950) | 34261667 | J Immunol | 2021 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/34261667 |
| Infants relax in response to unfamiliar foreign lullabies. | Bainbridge CM, Bertolo M, Youngers J, Atwood S, Yurdum L, Simson J, Lopez K, Xing F, Martin A, Mehr SA | Nature human behaviour | 33077883 | Nat Hum Behav | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33077883 |
| Citizen science can help to alleviate the generalizability crisis. | Hilton CB, Mehr SA | The Behavioral and brain sciences | 35139973 | Behav Brain Sci | 2022 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/35139973 |
| How games can make behavioural science better. | Long B, Simson J, Buxó-Lugo A, Watson DG, Mehr SA | Nature | 36650244 | Nature | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36650244 |
| Acoustic regularities in infant-directed speech and song across cultures. | Hilton CB, Moser CJ, Bertolo M, Lee-Rubin H, Amir D, Bainbridge CM, Simson J, Knox D, Glowacki L, Alemu E, Galbarczyk A, Jasienska G, Ross CT, Neff MB, Martin A, Cirelli LK, Trehub SE, Song J, Kim M, Schachner A, Vardy TA, Atkinson QD, Salenius A, Andelin J, Antfolk J, Madhivanan P, Siddaiah A, Placek CD, Salali GD, Keestra S, Singh M, Collins SA, Patton JQ, Scaff C, Stieglitz J, Cutipa SC, Moya C, Sagar RR, Anyawire M, Mabulla A, Wood BM, Krasnow MM, Mehr SA | Nature human behaviour | 35851843 | Nat Hum Behav | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35851843 |
| The presence of fear: How subjective fear, not physiological changes, shapes the experience of presence. | Maymon CN, Crawford MT, Blackburne K, Botes A, Carnegie K, Mehr SA, Meier J, Murphy J, Miles NL, Robinson K, Tooley M, Grimshaw GM | Journal of experimental psychology. General | 38635168 | J Exp Psychol Gen | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38635168 |
| Form and Function in Human Song. | Mehr SA, Singh M, York H, Glowacki L, Krasnow MM | Current biology : CB | 29395919 | Curr Biol | 2018 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/29395919 |
| Across demographics and recent history, most parents sing to their infants and toddlers daily. | Yan R, Jessani G, Spelke ES, de Villiers P, de Villiers J, Mehr SA | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 34719251 | Philos Trans R Soc Lond B Biol Sci | 2021 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/34719251 |
| Cross-Cultural Work in Music Cognition: Challenges, Insights, and Recommendations. | Jacoby N, Margulis EH, Clayton M, Hannon E, Honing H, Iversen J, Klein TR, Mehr SA, Pearson L, Peretz I, Perlman M, Polak R, Ravignani A, Savage PE, Steingo G, Stevens CJ, Trainor L, Trehub S, Veal M, Wald-Fuhrmann M | Music perception | 36936548 | Music Percept | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36936548 |
| Online Developmental Science to Foster Innovation, Access, and Impact. | Sheskin M, Scott K, Mills CM, Bergelson E, Bonawitz E, Spelke ES, Fei-Fei L, Keil FC, Gweon H, Tenenbaum JB, Jara-Ettinger J, Adolph KE, Rhodes M, Frank MC, Mehr SA, Schulz L | Trends in cognitive sciences | 32624386 | Trends Cogn Sci | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32624386 |
| Expectancy Effects Threaten the Inferential Validity of Synchrony-Prosociality Research. | Atwood S, Schachner A, Mehr SA | Open mind : discoveries in cognitive science | 36891035 | Open Mind (Camb) | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36891035 |
| Language experience predicts music processing in a half-million speakers of fifty-four languages. | Liu J, Hilton CB, Bergelson E, Mehr SA | Current biology : CB | 37105166 | Curr Biol | 2023 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/37105166 |
| Universal interpretations of vocal music. | Yurdum L, Singh M, Glowacki L, Vardy T, Atkinson QD, Hilton CB, Sauter D, Krasnow MM, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 37676911 | Proc Natl Acad Sci U S A | 2023 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/37676911 |
| Developmental psychologists should adopt citizen science to improve generalization and reproducibility. | Li W, Germine LT, Mehr SA, Srinivasan M, Hartshorne J | Infant and child development | 38515737 | Infant Child Dev | 2024 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/38515737 |
| Language experience predicts music processing in a half-million speakers of fifty-four languages. | Liu J, Hilton CB, Bergelson E, Mehr SA | Current biology : CB | 40245864 | Curr Biol | 2025 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/40245864 |
| Ecological Momentary Assessment Reveals Causal Effects of Music Enrichment on Infant Mood. | Cho E, Yurdum L, Ebinne E, Hilton CB, Lai E, Bertolo M, Brown P, Milosh B, Sened H, Tamir DI, Mehr SA | Child development | 40432545 | Child Dev | 2025 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/40432545 |
| Sight-over-sound judgments of music performances are replicable effects with limited interpretability. | Mehr SA, Scannell DA, Winner E | PloS one | 30183719 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30183719 |
| The ability to predict actions of others from distributed cues is still developing in 6- to 8-year-old children. | McMahon E, Kim D, Mehr SA, Nakayama K, Spelke ES, Vaziri-Pashkam M | Journal of vision | 34003244 | J Vis | 2021 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/34003244 |
| Toward a productive evolutionary understanding of music. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 34588071 | Behav Brain Sci | 2021 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/34588071 |
| Core systems of music perception. | Mehr SA | Trends in cognitive sciences | 40517090 | Trends Cogn Sci | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40517090 |
| Response to vocal music in Angelman syndrome contrasts with Prader-Willi syndrome. | Kotler J, Mehr SA, Egner A, Haig D, Krasnow MM | Evolution and human behavior : official journal of the Human Behavior and Evolution Society | 32655274 | Evol Hum Behav | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32655274 |
| Universality and diversity in human song. | Mehr SA, Singh M, Knox D, Ketter DM, Pickens-Jones D, Atwood S, Lucas C, Jacoby N, Egner AA, Hopkins EJ, Howard RM, Hartshorne JK, Jennings MV, Simson J, Bainbridge CM, Pinker S, O'Donnell TJ, Krasnow MM, Glowacki L | Science (New York, N.Y.) | 31753969 | Science | 2019 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/31753969 |
| Sound-induced motion in chimpanzees does not imply shared ancestry for music or dance. | Bertolo M, Singh M, Mehr SA | Proceedings of the National Academy of Sciences of the United States of America | 33443199 | Proc Natl Acad Sci U S A | 2021 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/33443199 |
| Origins of music in credible signaling. | Mehr SA, Krasnow MM, Bryant GA, Hagen EH | The Behavioral and brain sciences | 32843107 | Behav Brain Sci | 2020 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/32843107 |
| Children infer the behavioral contexts of unfamiliar foreign songs. | Hilton CB, Crowley-de Thierry L, Yan R, Martin A, Mehr SA | Journal of experimental psychology. General | 36222671 | J Exp Psychol Gen | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36222671 |
| Music, a piece of many puzzles in developmental science. | Mehr SA, Bortfeld H | Developmental science | 37501524 | Dev Sci | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37501524 |
| Spectro-temporal acoustical markers differentiate speech from song across cultures. | Albouy P, Mehr SA, Hoyer RS, Ginzburg J, Du Y, Zatorre RJ | Nature communications | 38844457 | Nat Commun | 2024 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/38844457 |
| Mortality Quadrupled Among Opioid-Driven Hospitalizations, Notably Within Lower-Income And Disabled White Populations. | Song Z | Health affairs (Project Hope) | 29200349 | Health Aff (Millwood) | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29200349 |
| Physician Payment Disparities and Access to Services-a Look Across Specialties. | Goodson JD, Shahbazi S, Song Z | Journal of general internal medicine | 31385213 | J Gen Intern Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31385213 |
| Racial Disparities in Patient-Reported Measures of Physician Cultural Competency Among Cancer Survivors in the United States. | Butler SS, Winkfield KM, Ahn C, Song Z, Dee EC, Mahal BA, Sanford NN | JAMA oncology | 31670752 | JAMA Oncol | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31670752 |
| Potential Implications of Private Equity Investments in Health Care Delivery. | Gondi S, Song Z | JAMA | 30816912 | JAMA | 2019 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/30816912 |
| Health Reform and Utilization of High-Volume Hospitals for Complex Cancer Operations. | Loehrer AP, Chang DC, Song Z, Chang GJ | Journal of oncology practice | 29155612 | J Oncol Pract | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29155612 |
| Prices And Cost Sharing For Psychotherapy In Network Versus Out Of Network In The United States. | Benson NM, Song Z | Health affairs (Project Hope) | 32634359 | Health Aff (Millwood) | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32634359 |
| Characteristics of Private Equity-Owned Hospitals in 2018. | Bruch J, Zeltzer D, Song Z | Annals of internal medicine | 32986485 | Ann Intern Med | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32986485 |
| Dental Services Use: Medicare Beneficiaries Experience Immediate And Long-Term Reductions After Enrollment. | Simon L, Song Z, Barnett ML | Health affairs (Project Hope) | 36745837 | Health Aff (Millwood) | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36745837 |
| Racial and Ethnic Disparities in Hospitalization Outcomes Among Medicare Beneficiaries During the COVID-19 Pandemic. | Song Z, Zhang X, Patterson LJ, Barnes CL, Haas DA | JAMA health forum | 35977303 | JAMA Health Forum | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35977303 |
| Geographic Variation in Private Equity Penetration Across Select Office-Based Physician Specialties in the US. | Singh Y, Zhu JM, Polsky D, Song Z | JAMA health forum | 35977319 | JAMA Health Forum | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35977319 |
| A Policy Framework for the Growing Influence of Private Equity in Health Care Delivery. | Cai C, Song Z | JAMA | 37052901 | JAMA | 2023 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/37052901 |
| Firearm Injuries In Children And Adolescents: Health And Economic Consequences Among Survivors And Family Members. | Song Z, Zubizarreta JR, Giuriato M, Koh KA, Sacks CA | Health affairs (Project Hope) | 37931194 | Health Aff (Millwood) | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37931194 |
| The US Affordable Care Act: Reflections and directions at the close of a decade. | McIntyre A, Song Z | PLoS medicine | 30807584 | PLoS Med | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30807584 |
| Moving Beyond the Hospital. | McCarthy CP, Vaduganathan M, Song Z | Circulation | 30571513 | Circulation | 2018 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/30571513 |
| Implications of Changes in Medicare Payment and Documentation for Primary Care Spending and Time Use. | Basu S, Song Z, Phillips RS, Bitton A, Landon BE | Journal of general internal medicine | 32495087 | J Gen Intern Med | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32495087 |
| Mortality Before and After Border Wall Construction Along the US-Mexico Border, 1990-2017. | Bruch JD, Barin O, Venkataramani AS, Song Z | American journal of public health | 34197717 | Am J Public Health | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34197717 |
| Taking account of accountable care. | Song Z | Health services research | 34105147 | Health Serv Res | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34105147 |
| Expansion of Private Equity Involvement in Women's Health Care. | Bruch JD, Borsa A, Song Z, Richardson SS | JAMA internal medicine | 32833005 | JAMA Intern Med | 2020 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/32833005 |
| Changes in Hospital Income, Use, and Quality Associated With Private Equity Acquisition. | Bruch JD, Gondi S, Song Z | JAMA internal medicine | 32833006 | JAMA Intern Med | 2020 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/32833006 |
| Physician-initiated payment reform: a new path toward value. | Gondi S, Ferris TG, Patel KK, Song Z | The American journal of managed care | 31518092 | Am J Manag Care | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31518092 |
| Demographic And Clinical Factors Associated With Long COVID. | Song Z, Giuriato M | Health affairs (Project Hope) | 36877912 | Health Aff (Millwood) | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36877912 |
| Health Care Utilization among Homeless-Experienced Adults Who Were Seen by a Mobile Addiction Health Clinic in Boston, Massachusetts: A Quasi-Experimental Study. | Fine DR, Joyce A, Chang Y, Lewis E, Weinstock K, Wright J, Gaeta J, Song Z, Baggett TP | Substance use & misuse | 37184078 | Subst Use Misuse | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37184078 |
| Improving Affordability and Equity in Medicare Advantage. | Song Z, Basu S | Inquiry : a journal of medical care organization, provision and financing | 31208262 | Inquiry | 2019 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/31208262 |
| Changes in Health Care Spending, Use, and Clinical Outcomes After Nonfatal Firearm Injuries Among Survivors and Family Members : A Cohort Study. | Song Z, Zubizarreta JR, Giuriato M, Paulos E, Koh KA | Annals of internal medicine | 35377713 | Ann Intern Med | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35377713 |
| Out-of-Network Spending on Behavioral Health, 2008-2016. | Song Z, Lillehaugen T, Busch SH, Benson NM, Wallace J | Journal of general internal medicine | 31993946 | J Gen Intern Med | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31993946 |
| Type 2 Myocardial Infarction and the Hospital Readmission Reduction Program. | McCarthy CP, Vaduganathan M, Singh A, Song Z, Blankstein R, Gaggin HK, Wasfy JH, Januzzi JL Jr | Journal of the American College of Cardiology | 30165988 | J Am Coll Cardiol | 2018 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/30165988 |
| Evaluation of Economic and Clinical Outcomes Under Centers for Medicare & Medicaid Services Mandatory Bundled Payments for Joint Replacements. | Haas DA, Zhang X, Kaplan RS, Song Z | JAMA internal medicine | 31157819 | JAMA Intern Med | 2019 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/31157819 |
| Health Care Spending, Utilization, and Quality 8 Years into Global Payment. | Song Z, Ji Y, Safran DG, Chernew ME | The New England journal of medicine | 31314969 | N Engl J Med | 2019 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/31314969 |
| Health Care Spending Slowed After Rhode Island Applied Affordability Standards To Commercial Insurers. | Baum A, Song Z, Landon BE, Phillips RS, Bitton A, Basu S | Health affairs (Project Hope) | 30715981 | Health Aff (Millwood) | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30715981 |
| Out-Of-Network Spending Mostly Declined In Privately Insured Populations With A Few Notable Exceptions From 2008 To 2016. | Song Z, Johnson W, Kennedy K, Biniek JF, Wallace J | Health affairs (Project Hope) | 32479236 | Health Aff (Millwood) | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32479236 |
| Will Increasing Primary Care Spending Alone Save Money? | Song Z, Gondi S | JAMA | 31415068 | JAMA | 2019 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/31415068 |
| Out-of-Network Laboratory Test Spending, Utilization, and Prices in the US. | Song Z, Lillehaugen T, Wallace J | JAMA | 33904879 | JAMA | 2021 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/33904879 |
| Changes in Prescription Drug and Health Care Use Over 9 Years After the Large Drug Price Increase for Colchicine. | Ly DP, Giuriato MA, Song Z | JAMA internal medicine | 37155179 | JAMA Intern Med | 2023 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/37155179 |
| Physician Practice Pattern Variations in Common Clinical Scenarios Within 5 US Metropolitan Areas. | Song Z, Kannan S, Gambrel RJ, Marino M, Vaduganathan M, Clapp MA, Seiglie JA, Bloom PP, Malik AN, Resnick MJ | JAMA health forum | 35977237 | JAMA Health Forum | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35977237 |
| Making the Affordable Care Act Marketplace More Affordable. | Song Z | JAMA health forum | 36046713 | JAMA Health Forum | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/36046713 |
| Protecting Patients And Society In An Era Of Private Equity Provider Ownership: Challenges And Opportunities For Policy. | Cai C, Song Z | Health affairs (Project Hope) | 38709967 | Health Aff (Millwood) | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38709967 |
| Baby Boomers and Beds: a Demographic Challenge for the Ages. | Song Z, Ferris TG | Journal of general internal medicine | 29273896 | J Gen Intern Med | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29273896 |
| Incorporating value into physician payment and patient cost sharing. | Song Z, Navathe AS, Emanuel EJ, Volpp KG | The American journal of managed care | 29553274 | Am J Manag Care | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29553274 |
| Differences in the Complexity of Office Visits by Physician Specialty: NAMCS 2013-2016. | Goodson JD, Shahbazi S, Rao K, Song Z | Journal of general internal medicine | 32157646 | J Gen Intern Med | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32157646 |
| Health Care Spending And Use Among People Experiencing Unstable Housing In The Era Of Accountable Care Organizations. | Koh KA, Racine M, Gaeta JM, Goldie J, Martin DP, Bock B, Takach M, O'Connell JJ, Song Z | Health affairs (Project Hope) | 32011951 | Health Aff (Millwood) | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32011951 |
| Changes in Out-of-Pocket Costs for US Hospital Admissions Between December and January Every Year. | Kannan S, Song Z | JAMA health forum | 37145689 | JAMA Health Forum | 2023 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/37145689 |
| Association of Private Equity Acquisition of Physician Practices With Changes in Health Care Spending and Utilization. | Singh Y, Song Z, Polsky D, Bruch JD, Zhu JM | JAMA health forum | 36218927 | JAMA Health Forum | 2022 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/36218927 |
| Changes in use of low-value services during the COVID-19 pandemic. | Shahzad M, Song Z, Chernew ME, Fendrick AM | The American journal of managed care | 36374618 | Am J Manag Care | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36374618 |
| Creating artificial signaling gradients to spatially pattern engineered tissues. | Zheng SL, Loh KM | Current opinion in biotechnology | 36182872 | Curr Opin Biotechnol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36182872 |
| Building human artery and vein endothelial cells from pluripotent stem cells, and enduring mysteries surrounding arteriovenous development. | Loh KM, Ang LT | Seminars in cell & developmental biology | 37393122 | Semin Cell Dev Biol | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/37393122 |
| Long-term ex vivo haematopoietic-stem-cell expansion allows nonconditioned transplantation. | Wilkinson AC, Ishida R, Kikuchi M, Sudo K, Morita M, Crisostomo RV, Yamamoto R, Loh KM, Nakamura Y, Watanabe M, Nakauchi H, Yamazaki S | Nature | 31142833 | Nature | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31142833 |
| Antibody Conditioning Enables MHC-Mismatched Hematopoietic Stem Cell Transplants and Organ Graft Tolerance. | George BM, Kao KS, Kwon HS, Velasco BJ, Poyser J, Chen A, Le AC, Chhabra A, Burnett CE, Cajuste D, Hoover M, Loh KM, Shizuru JA, Weissman IL | Cell stem cell | 31204177 | Cell Stem Cell | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31204177 |
| Improving the safety of human pluripotent stem cell therapies using genome-edited orthogonal safeguards. | Martin RM, Fowler JL, Cromer MK, Lesch BJ, Ponce E, Uchida N, Nishimura T, Porteus MH, Loh KM | Nature communications | 32483127 | Nat Commun | 2020 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/32483127 |
| Monolayer platform to generate and purify primordial germ-like cells in vitro provides insights into human germline specification. | Vijayakumar S, Sala R, Kang G, Chen A, Pablo MA, Adebayo AI, Cipriano A, Fowler JL, Gomes DL, Ang LT, Loh KM, Sebastiano V | Nature communications | 37709760 | Nat Commun | 2023 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/37709760 |
| Generating human artery and vein cells from pluripotent stem cells highlights the arterial tropism of Nipah and Hendra viruses. | Ang LT, Nguyen AT, Liu KJ, Chen A, Xiong X, Curtis M, Martin RM, Raftry BC, Ng CY, Vogel U, Lander A, Lesch BJ, Fowler JL, Holman AR, Chai T, Vijayakumar S, Suchy FP, Nishimura T, Bhadury J, Porteus MH, Nakauchi H, Cheung C, George SC, Red-Horse K, Prescott JB, Loh KM | Cell | 35738284 | Cell | 2022 Jul 7 | https://www.ncbi.nlm.nih.gov/pubmed/35738284 |
| Two parallel lineage-committed progenitors contribute to the developing brain. | Dundes CE, Jokhai RT, Ahsan H, Kang RS, Salomon-Shulman REA, Rajan A, Kim YS, Stanton LJ, Xu C, Do S, McDonald BD, López JMA, Urrutia HA, Greenfeld H, Wong A, Qu Y, Petkovic AS, Miao Y, Garcia KC, Monje M, Wagner DE, Bronner ME, Lowe CJ, Loh KM | bioRxiv : the preprint server for biology | 40631129 | bioRxiv | 2025 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/40631129 |
| A Roadmap for Human Liver Differentiation from Pluripotent Stem Cells. | Ang LT, Tan AKY, Autio MI, Goh SH, Choo SH, Lee KL, Tan J, Pan B, Lee JJH, Lum JJ, Lim CYY, Yeo IKX, Wong CJY, Liu M, Oh JLL, Chia CPL, Loh CH, Chen A, Chen Q, Weissman IL, Loh KM, Lim B | Cell reports | 29466743 | Cell Rep | 2018 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/29466743 |
| A critical look: Challenges in differentiating human pluripotent stem cells into desired cell types and organoids. | Fowler JL, Ang LT, Loh KM | Wiley interdisciplinary reviews. Developmental biology | 31746148 | Wiley Interdiscip Rev Dev Biol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/31746148 |
| Dach1 Extends Artery Networks and Protects Against Cardiac Injury. | Raftrey B, Williams M, Rios Coronado PE, Fan X, Chang AH, Zhao M, Roth R, Trimm E, Racelis R, D'Amato G, Phansalkar R, Nguyen A, Chai T, Gonzalez KM, Zhang Y, Ang LT, Loh KM, Bernstein D, Red-Horse K | Circulation research | 34383559 | Circ Res | 2021 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/34383559 |
| DNMT3A(R882H) Is Not Required for Disease Maintenance in Primary Human AML, but Is Associated With Increased Leukemia Stem Cell Frequency. | Köhnke T, Karigane D, Hilgart E, Fan AC, Kayamori K, Miyauchi M, Collins CT, Suchy FP, Rangavajhula A, Feng Y, Nakauchi Y, Martinez-Montes E, Fowler JL, Loh KM, Nakauchi H, Koldobskiy MA, Feinberg AP, Majeti R | bioRxiv : the preprint server for biology | 39553934 | bioRxiv | 2024 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/39553934 |
| Affinity-matured DLL4 ligands as broad-spectrum modulators of Notch signaling. | Gonzalez-Perez D, Das S, Antfolk D, Ahsan HS, Medina E, Dundes CE, Jokhai RT, Egan ED, Blacklow SC, Loh KM, Rodriguez PC, Luca VC | Nature chemical biology | 36050494 | Nat Chem Biol | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36050494 |
| A stem cell roadmap of ribosome heterogeneity reveals a function for RPL10A in mesoderm production. | Genuth NR, Shi Z, Kunimoto K, Hung V, Xu AF, Kerr CH, Tiu GC, Oses-Prieto JA, Salomon-Shulman REA, Axelrod JD, Burlingame AL, Loh KM, Barna M | Nature communications | 36123354 | Nat Commun | 2022 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/36123354 |
| Lineage-tracing hematopoietic stem cell origins in vivo to efficiently make human HLF+ HOXA+ hematopoietic progenitors from pluripotent stem cells. | Fowler JL, Zheng SL, Nguyen A, Chen A, Xiong X, Chai T, Chen JY, Karigane D, Banuelos AM, Niizuma K, Kayamori K, Nishimura T, Cromer MK, Gonzalez-Perez D, Mason C, Liu DD, Yilmaz L, Miquerol L, Porteus MH, Luca VC, Majeti R, Nakauchi H, Red-Horse K, Weissman IL, Ang LT, Loh KM | Developmental cell | 38569552 | Dev Cell | 2024 May 6 | https://www.ncbi.nlm.nih.gov/pubmed/38569552 |
| Functional interrogation and mining of natively paired human V(H):V(L) antibody repertoires. | Wang B, DeKosky BJ, Timm MR, Lee J, Normandin E, Misasi J, Kong R, McDaniel JR, Delidakis G, Leigh KE, Niezold T, Choi CW, Viox EG, Fahad A, Cagigi A, Ploquin A, Leung K, Yang ES, Kong WP, Voss WN, Schmidt AG, Moody MA, Ambrozak DR, Henry AR, Laboune F, Ledgerwood JE, Graham BS, Connors M, Douek DC, Sullivan NJ, Ellington AD, Mascola JR, Georgiou G | Nature biotechnology | 29309060 | Nat Biotechnol | 2018 Feb | https://www.ncbi.nlm.nih.gov/pubmed/29309060 |
| VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage. | Shen CH, DeKosky BJ, Guo Y, Xu K, Gu Y, Kilam D, Ko SH, Kong R, Liu K, Louder MK, Ou L, Zhang B, Chao CW, Corcoran MM, Feng E, Huang J, Normandin E, O'Dell S, Ransier A, Rawi R, Sastry M, Schmidt SD, Wang S, Wang Y, Chuang GY, Doria-Rose NA, Lin B, Zhou T, Boritz EA, Connors M, Douek DC, Karlsson Hedestam GB, Sheng Z, Shapiro L, Mascola JR, Kwong PD | Cell host & microbe | 32130953 | Cell Host Microbe | 2020 Apr 8 | https://www.ncbi.nlm.nih.gov/pubmed/32130953 |
| Linking autoantigen properties to mechanisms of immunity. | Griffin JD, Song JY, Sestak JO, DeKosky BJ, Berkland CJ | Advanced drug delivery reviews | 32325104 | Adv Drug Deliv Rev | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32325104 |
| Structural basis for accommodation of emerging B.1.351 and B.1.1.7 variants by two potent SARS-CoV-2 neutralizing antibodies. | Cerutti G, Rapp M, Guo Y, Bahna F, Bimela J, Reddem ER, Yu J, Wang P, Liu L, Huang Y, Ho DD, Kwong PD, Sheng Z, Shapiro L | Structure (London, England : 1993) | 34111408 | Structure | 2021 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/34111408 |
| A molecular trap against COVID-19. | DeKosky BJ | Science (New York, N.Y.) | 32883851 | Science | 2020 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/32883851 |
| Immortalization and functional screening of natively paired human T cell receptor repertoires. | Fahad AS, Chung CY, Lopez Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ | Protein engineering, design & selection : PEDS | 35174859 | Protein Eng Des Sel | 2022 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/35174859 |
| Clonal Lineage and Gene Diversity Analysis of Paired Antibody Heavy and Light Chains. | Fahad AS, Gutiérrez-Gonzalez MF, Madan B, DeKosky BJ | Cold Spring Harbor protocols | 39586682 | Cold Spring Harb Protoc | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39586682 |
| Antibody-guided structure-based vaccines. | Kwong PD, DeKosky BJ, Ulmer JB | Seminars in immunology | 33246736 | Semin Immunol | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33246736 |
| Potent SARS-CoV-2 neutralizing antibodies directed against spike N-terminal domain target a single supersite. | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L | Cell host & microbe | 33789084 | Cell Host Microbe | 2021 May 12 | https://www.ncbi.nlm.nih.gov/pubmed/33789084 |
| Cell activation-based screening of natively paired human T cell receptor repertoires. | Fahad AS, Chung CY, López Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ | Scientific reports | 37198258 | Sci Rep | 2023 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/37198258 |
| Neutralizing antibody 5-7 defines a distinct site of vulnerability in SARS-CoV-2 spike N-terminal domain. | Cerutti G, Guo Y, Wang P, Nair MS, Wang M, Huang Y, Yu J, Liu L, Katsamba PS, Bahna F, Reddem ER, Kwong PD, Ho DD, Sheng Z, Shapiro L | Cell reports | 34706271 | Cell Rep | 2021 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34706271 |
| Mapping monoclonal anti-SARS-CoV-2 antibody repertoires against diverse coronavirus antigens. | de Souza MO, Madan B, Teng IT, Huang A, Liu L, Fahad AS, Lopez Acevedo SN, Pan X, Sastry M, Gutierrez-Gonzalez M, Yin MT, Zhou T, Ho DD, Kwong PD, DeKosky BJ | Frontiers in immunology | 36119018 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36119018 |
| Antibody-dependent enhancement and SARS-CoV-2 vaccines and therapies. | Lee WS, Wheatley AK, Kent SJ, DeKosky BJ | Nature microbiology | 32908214 | Nat Microbiol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32908214 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Lopez Acevedo SN, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | bioRxiv : the preprint server for biology | 32596696 | bioRxiv | 2020 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/32596696 |
| The covalent SNAP tag for protein display quantification and low-pH protein engineering. | Jin W, Madan B, Mussman BK, Hailemariam AT, Fahad AS, Wolfe JR, Kwon YD, Zhang B, Shapiro L, Kwong PD, DeKosky BJ | Journal of biotechnology | 32561362 | J Biotechnol | 2020 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/32561362 |
| Highly protective antimalarial antibodies via precision library generation and yeast display screening. | Banach BB, Tripathi P, Da Silva Pereira L, Gorman J, Nguyen TD, Dillon M, Fahad AS, Kiyuka PK, Madan B, Wolfe JR, Bonilla B, Flynn B, Francica JR, Hurlburt NK, Kisalu NK, Liu T, Ou L, Rawi R, Schön A, Shen CH, Teng IT, Zhang B, Pancera M, Idris AH, Seder RA, Kwong PD, DeKosky BJ | The Journal of experimental medicine | 35736810 | J Exp Med | 2022 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/35736810 |
| Molecular probes of spike ectodomain and its subdomains for SARS-CoV-2 variants, Alpha through Omicron. | Teng IT, Nazzari AF, Choe M, Liu T, Oliveira de Souza M, Petrova Y, Tsybovsky Y, Wang S, Zhang B, Artamonov M, Madan B, Huang A, Lopez Acevedo SN, Pan X, Ruckwardt TJ, DeKosky BJ, Mascola JR, Misasi J, Sullivan NJ, Zhou T, Kwong PD | PloS one | 35609088 | PLoS One | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35609088 |
| Clonal Variant Analysis of Antibody Engineering Libraries. | Fahad AS, Gutiérrez-Gonzalez MF, Madan B, DeKosky BJ | Cold Spring Harbor protocols | 39586683 | Cold Spring Harb Protoc | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39586683 |
| Ultrasonically-guided flow focusing generates precise emulsion droplets for high-throughput single cell analyses. | Lagerman CE, López Acevedo SN, Fahad AS, Hailemariam AT, Madan B, DeKosky BJ | Journal of bioscience and bioengineering | 30904454 | J Biosci Bioeng | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30904454 |
| Tetrameric Fluorescent Antigen Arrays for Single-Step Identification of Antigen-Specific B Cells. | Apley KD, Griffin JD, Johnson SN, Berkland CJ, DeKosky BJ | Journal of visualized experiments : JoVE | 33165322 | J Vis Exp | 2020 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/33165322 |
| Mutational fitness landscapes reveal genetic and structural improvement pathways for a vaccine-elicited HIV-1 broadly neutralizing antibody. | Madan B, Zhang B, Xu K, Chao CW, O'Dell S, Wolfe JR, Chuang GY, Fahad AS, Geng H, Kong R, Louder MK, Nguyen TD, Rawi R, Schön A, Sheng Z, Nimrania R, Wang Y, Zhou T, Lin BC, Doria-Rose NA, Shapiro L, Kwong PD, DeKosky BJ | Proceedings of the National Academy of Sciences of the United States of America | 33649208 | Proc Natl Acad Sci U S A | 2021 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/33649208 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Lopez Acevedo SN, Madan B, Oliveira de Souza M, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang LA, Abiona OM, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | Cell reports | 33091382 | Cell Rep | 2020 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/33091382 |
| Optimized Production of Fc Fusion Proteins by Sortase Enzymatic Ligation. | Apley KD, Laflin AD, Johnson SN, Batrash N, Griffin JD, Berkland CJ, DeKosky BJ | Industrial & engineering chemistry research | 38646185 | Ind Eng Chem Res | 2021 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/38646185 |
| Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site. | Banach BB, Pletnev S, Olia AS, Xu K, Zhang B, Rawi R, Bylund T, Doria-Rose NA, Nguyen TD, Fahad AS, Lee M, Lin BC, Liu T, Louder MK, Madan B, McKee K, O'Dell S, Sastry M, Schön A, Bui N, Shen CH, Wolfe JR, Chuang GY, Mascola JR, Kwong PD, DeKosky BJ | Nature communications | 37989731 | Nat Commun | 2023 Nov 21 | https://www.ncbi.nlm.nih.gov/pubmed/37989731 |
| Quality Control: Chain Pairing Precision and Monitoring of Cross-Sample Contamination: A Method by the AIRR Community. | Chung CY, Gutiérrez-González M, López Acevedo SN, Fahad AS, DeKosky BJ, AIRR Community | Methods in molecular biology (Clifton, N.J.) | 35622337 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35622337 |
| Antibody screening at reduced pH enables preferential selection of potently neutralizing antibodies targeting SARS-CoV-2. | Madan B, Reddem ER, Wang P, Casner RG, Nair MS, Huang Y, Fahad AS, de Souza MO, Banach BB, López Acevedo SN, Pan X, Nimrania R, Teng IT, Bahna F, Zhou T, Zhang B, Yin MT, Ho DD, Kwong PD, Shapiro L, DeKosky BJ | AIChE journal. American Institute of Chemical Engineers | 34898670 | AIChE J | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34898670 |
| Beyond Single Clones: High-Throughput Sequencing in Antibody Discovery. | Fahad AS, Gutiérrez-Gonzalez MF, Madan B, DeKosky BJ | Cold Spring Harbor protocols | 39586681 | Cold Spring Harb Protoc | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39586681 |
| The Molecular Mechanisms That Underlie the Immune Biology of Anti-drug Antibody Formation Following Treatment With Monoclonal Antibodies. | Vaisman-Mentesh A, Gutierrez-Gonzalez M, DeKosky BJ, Wine Y | Frontiers in immunology | 33013848 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33013848 |
| Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes. | Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Acevedo SNL, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD | SSRN | 32742241 | SSRN | 2020 Jul 21 | https://www.ncbi.nlm.nih.gov/pubmed/32742241 |
| Functional Profiling of Antibody Immune Repertoires in Convalescent Zika Virus Disease Patients. | Fahad AS, Timm MR, Madan B, Burgomaster KE, Dowd KA, Normandin E, Gutiérrez-González MF, Pennington JM, De Souza MO, Henry AR, Laboune F, Wang L, Ambrozak DR, Gordon IJ, Douek DC, Ledgerwood JE, Graham BS, Castilho LR, Pierson TC, Mascola JR, DeKosky BJ | Frontiers in immunology | 33732238 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33732238 |
| Bioinformatic Analysis of Natively Paired VH:VL Antibody Repertoires for Antibody Discovery. | Fahad AS, Madan B, DeKosky BJ | Methods in molecular biology (Clifton, N.J.) | 36346608 | Methods Mol Biol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36346608 |
| Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses. | Banach BB, Cerutti G, Fahad AS, Shen CH, Oliveira De Souza M, Katsamba PS, Tsybovsky Y, Wang P, Nair MS, Huang Y, Francino-Urdániz IM, Steiner PJ, Gutiérrez-González M, Liu L, López Acevedo SN, Nazzari AF, Wolfe JR, Luo Y, Olia AS, Teng IT, Yu J, Zhou T, Reddem ER, Bimela J, Pan X, Madan B, Laflin AD, Nimrania R, Yuen KY, Whitehead TA, Ho DD, Kwong PD, Shapiro L, DeKosky BJ | Cell reports | 34587480 | Cell Rep | 2021 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/34587480 |
| Optimized single-cell gates for yeast display screening. | Pan X, de Souza MO, Figueiras FM, Huang A, Banach BB, Wolfe JR, Pirhanov A, Madan B, DeKosky BJ | Protein engineering, design & selection : PEDS | 39667035 | Protein Eng Des Sel | 2025 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/39667035 |
| High-Throughput Antibody Neutralization Screening in Massively Parallel Droplet Arrays. | Gutierrez-Gonzalez M, Fahad AS, Delley CL, Chung CY, Jin S, Boyle N, de Souza MO, Pirhanov A, Galvez NMS, França CT, Marglous S, Bhagat E, Vincent D, Neumeier D, Cao Y, Doria-Rose N, Reddy ST, Schmidt AG, Balazs AB, Abate AR, DeKosky BJ | bioRxiv : the preprint server for biology | 39975077 | bioRxiv | 2025 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/39975077 |
| Antibody Data Analysis from Diverse Immune Libraries. | Fahad AS, Gutiérrez-Gonzalez MF, Madan B, DeKosky BJ | Cold Spring Harbor protocols | 39586680 | Cold Spring Harb Protoc | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39586680 |
| Opioids depress breathing through two small brainstem sites. | Bachmutsky I, Wei XP, Kish E, Yackle K | eLife | 32073401 | Elife | 2020 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/32073401 |
| A novel reticular node in the brainstem synchronizes neonatal mouse crying with breathing. | Wei XP, Collie M, Dempsey B, Fortin G, Yackle K | Neuron | 34998469 | Neuron | 2022 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/34998469 |
| ß-arrestin 2 germline knockout does not attenuate opioid respiratory depression. | Bachmutsky I, Wei XP, Durand A, Yackle K | eLife | 34002697 | Elife | 2021 May 18 | https://www.ncbi.nlm.nih.gov/pubmed/34002697 |
| Transformation of Our Understanding of Breathing Control by Molecular Tools. | Yackle K | Annual review of physiology | 36323001 | Annu Rev Physiol | 2023 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/36323001 |
| Krüppel-like factor/specificity protein evolution in the Spiralia and the implications for cephalopod visual system novelties. | McCulloch KJ, Koenig KM | Proceedings. Biological sciences | 33081641 | Proc Biol Sci | 2020 Oct 28 | https://www.ncbi.nlm.nih.gov/pubmed/33081641 |
| Nematostella vectensis exemplifies the exceptional expansion and diversity of opsins in the eyeless Hexacorallia. | McCulloch KJ, Babonis LS, Liu A, Daly CM, Martindale MQ, Koenig KM | EvoDevo | 37735470 | Evodevo | 2023 Sep 21 | https://www.ncbi.nlm.nih.gov/pubmed/37735470 |
| Co-option of the limb patterning program in cephalopod eye development. | Neal S, McCulloch KJ, Napoli FR, Daly CM, Coleman JH, Koenig KM | BMC biology | 34983491 | BMC Biol | 2022 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/34983491 |
| Cephalopod retinal development shows vertebrate-like mechanisms of neurogenesis. | Napoli FR, Daly CM, Neal S, McCulloch KJ, Zaloga AR, Liu A, Koenig KM | Current biology : CB | 36356573 | Curr Biol | 2022 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/36356573 |
| Evolution and development of complex eyes: a celebration of diversity. | Koenig KM, Gross JM | Development (Cambridge, England) | 33051250 | Development | 2020 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/33051250 |
| Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields. | Agbleke AA, Amitai A, Buenrostro JD, Chakrabarti A, Chu L, Hansen AS, Koenig KM, Labade AS, Liu S, Nozaki T, Ovchinnikov S, Seeber A, Shaban HA, Spille JH, Stephens AD, Su JH, Wadduwage D | Molecular cell | 32768408 | Mol Cell | 2020 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/32768408 |
| Highly Efficient Knockout of a Squid Pigmentation Gene. | Crawford K, Diaz Quiroz JF, Koenig KM, Ahuja N, Albertin CB, Rosenthal JJC | Current biology : CB | 32735817 | Curr Biol | 2020 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/32735817 |
| Basolateral Amygdala Astrocytes Are Engaged by the Acquisition and Expression of a Contextual Fear Memory. | Suthard RL, Senne RA, Buzharsky MD, Pyo AY, Dorst KE, Diep AH, Cole RH, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 37268419 | J Neurosci | 2023 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/37268419 |
| Theta-phase-specific modulation of dentate gyrus memory neurons. | Rahsepar B, Norman JF, Noueihed J, Lahner B, Quick MH, Ghaemi K, Pandya A, Fernandez FR, Ramirez S, White JA | eLife | 37401757 | Elife | 2023 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/37401757 |
| Reactivation of memory-associated neurons induces downstream suppression of competing neuronal populations. | Norman JF, Rahsepar B, Vena A, Thunemann M, Devor A, Ramirez S, White JA | Proceedings of the National Academy of Sciences of the United States of America | 40168126 | Proc Natl Acad Sci U S A | 2025 Apr 8 | https://www.ncbi.nlm.nih.gov/pubmed/40168126 |
| Ensemble-specific deficit in neuronal intrinsic excitability in aged mice. | Chen L, Francisco TR, Baggetta AM, Zaki Y, Ramirez S, Clem RL, Shuman T, Cai DJ | Neurobiology of aging | 36652783 | Neurobiol Aging | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36652783 |
| Erasable Hippocampal Neural Signatures Predict Memory Discrimination. | Kinsky NR, Orlin DJ, Ruesch EA, Kim B, Coello S, Diba K, Ramirez S | bioRxiv : the preprint server for biology | 36778486 | bioRxiv | 2024 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/36778486 |
| Chronic Gq activation of ventral hippocampal neurons and astrocytes differentially affects memory and behavior. | Suthard RL, Jellinger AL, Surets M, Shpokayte M, Pyo AY, Buzharsky MD, Senne RA, Dorst K, Leblanc H, Ramirez S | Neurobiology of aging | 36801699 | Neurobiol Aging | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36801699 |
| Social behavior in mice following chronic optogenetic stimulation of hippocampal engrams. | Doucette E, Merfeld E, Leblanc H, Monasterio A, Cincotta C, Grella SL, Logan J, Ramirez S | Neurobiology of learning and memory | 33164892 | Neurobiol Learn Mem | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33164892 |
| Chronic activation of fear engrams induces extinction-like behavior in ethanol-exposed mice. | Cincotta C, Murawski NJ, Grella SL, McKissick O, Doucette E, Ramirez S | Hippocampus | 32946184 | Hippocampus | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32946184 |
| Artificially Enhancing and Suppressing Hippocampus-Mediated Memories. | Chen BK, Murawski NJ, Cincotta C, McKissick O, Finkelstein A, Hamidi AB, Merfeld E, Doucette E, Grella SL, Shpokayte M, Zaki Y, Fortin A, Ramirez S | Current biology : CB | 31130452 | Curr Biol | 2019 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/31130452 |
| Hippocampal fear engrams modulate ethanol-induced maladaptive contextual generalization in mice. | Cincotta C, Ruesch E, Senne R, Ramirez S | Hippocampus | 35950345 | Hippocampus | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/35950345 |
| Reactivating hippocampal-mediated memories during reconsolidation to disrupt fear. | Grella SL, Fortin AH, Ruesch E, Bladon JH, Reynolds LF, Gross A, Shpokayte M, Cincotta C, Zaki Y, Ramirez S | Nature communications | 36096993 | Nat Commun | 2022 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/36096993 |
| Odor modulates the temporal dynamics of fear memory consolidation. | Grella SL, Fortin AH, McKissick O, Leblanc H, Ramirez S | Learning & memory (Cold Spring Harbor, N.Y.) | 32179657 | Learn Mem | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32179657 |
| Chronic activation of a negative engram induces behavioral and cellular abnormalities. | Jellinger AL, Suthard RL, Yuan B, Surets M, Ruesch EA, Caban AJ, Liu S, Shpokayte M, Ramirez S | eLife | 38990919 | Elife | 2024 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/38990919 |
| Linking Social Cognition to Learning and Memory. | Leblanc H, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 33177112 | J Neurosci | 2020 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/33177112 |
| Prelimbic cortex ensembles promote appetitive learning-associated behavior. | Surets M, Caban-Murillo A, Ramirez S | Learning & memory (Cold Spring Harbor, N.Y.) | 38408863 | Learn Mem | 2024 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/38408863 |
| Hippocampal cells segregate positive and negative engrams. | Shpokayte M, McKissick O, Guan X, Yuan B, Rahsepar B, Fernandez FR, Ruesch E, Grella SL, White JA, Liu XS, Ramirez S | Communications biology | 36163262 | Commun Biol | 2022 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/36163262 |
| Social reactivation of fear engrams enhances memory recall. | Finkelstein AB, Leblanc H, Cole RH, Gallerani T, Vieira A, Zaki Y, Ramirez S | Proceedings of the National Academy of Sciences of the United States of America | 35286206 | Proc Natl Acad Sci U S A | 2022 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/35286206 |
| From Engrams to Pathologies of the Brain. | Denny CA, Lebois E, Ramirez S | Frontiers in neural circuits | 28439228 | Front Neural Circuits | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28439228 |
| Route-dependent spatial engram tagging in mouse dentate gyrus. | Wilmerding LK, Kondratyev I, Ramirez S, Hasselmo ME | Neurobiology of learning and memory | 36822466 | Neurobiol Learn Mem | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36822466 |
| Hippocampus and amygdala fear memory engrams re-emerge after contextual fear relapse. | Zaki Y, Mau W, Cincotta C, Monasterio A, Odom E, Doucette E, Grella SL, Merfeld E, Shpokayte M, Ramirez S | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 35941286 | Neuropsychopharmacology | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/35941286 |
| Hippocampal Engrams Generate Variable Behavioral Responses and Brain-Wide Network States. | Dorst KE, Senne RA, Diep AH, de Boer AR, Suthard RL, Leblanc H, Ruesch EA, Pyo AY, Skelton S, Carstensen LC, Malmberg S, McKissick OP, Bladon JH, Ramirez S | The Journal of neuroscience : the official journal of the Society for Neuroscience | 38050098 | J Neurosci | 2024 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/38050098 |
| The calendar of epidemics: Seasonal cycles of infectious diseases. | Martinez ME | PLoS pathogens | 30408114 | PLoS Pathog | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/30408114 |
| Socioeconomic disparities in subway use and COVID-19 outcomes in New York City. | Sy KTL, Martinez ME, Rader B, White LF | medRxiv : the preprint server for health sciences | 32511568 | medRxiv | 2020 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/32511568 |
| Cellular and transcriptional diversity over the course of human lactation. | Nyquist SK, Gao P, Haining TKJ, Retchin MR, Golan Y, Drake RS, Kolb K, Mead BE, Ahituv N, Martinez ME, Shalek AK, Berger B, Goods BA | Proceedings of the National Academy of Sciences of the United States of America | 35377806 | Proc Natl Acad Sci U S A | 2022 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/35377806 |
| Guidelines for Modeling and Reporting Health Effects of Climate Change Mitigation Actions. | Hess JJ, Ranadive N, Boyer C, Aleksandrowicz L, Anenberg SC, Aunan K, Belesova K, Bell ML, Bickersteth S, Bowen K, Burden M, Campbell-Lendrum D, Carlton E, Cissé G, Cohen F, Dai H, Dangour AD, Dasgupta P, Frumkin H, Gong P, Gould RJ, Haines A, Hales S, Hamilton I, Hasegawa T, Hashizume M, Honda Y, Horton DE, Karambelas A, Kim H, Kim SE, Kinney PL, Kone I, Knowlton K, Lelieveld J, Limaye VS, Liu Q, Madaniyazi L, Martinez ME, Mauzerall DL, Milner J, Neville T, Nieuwenhuijsen M, Pachauri S, Perera F, Pineo H, Remais JV, Saari RK, Sampedro J, Scheelbeek P, Schwartz J, Shindell D, Shyamsundar P, Taylor TJ, Tonne C, Van Vuuren D, Wang C, Watts N, West JJ, Wilkinson P, Wood SA, Woodcock J, Woodward A, Xie Y, Zhang Y, Ebi KL | Environmental health perspectives | 33170741 | Environ Health Perspect | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33170741 |
| Benefits and Challenges in Using Seroprevalence Data to Inform Models for Measles and Rubella Elimination. | Winter AK, Martinez ME, Cutts FT, Moss WJ, Ferrari MJ, McKee A, Lessler J, Hayford K, Wallinga J, Metcalf CJE | The Journal of infectious diseases | 29562334 | J Infect Dis | 2018 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/29562334 |
| Rescuing Troves of Hidden Ecological Data to Tackle Emerging Mosquito-Borne Diseases. | Rund SSC, Moise IK, Beier JC, Martinez ME | Journal of the American Mosquito Control Association | 31442186 | J Am Mosq Control Assoc | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31442186 |
| Circadian Rhythms in Environmental Health Sciences. | Leung JM, Martinez ME | Current environmental health reports | 32662059 | Curr Environ Health Rep | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32662059 |
| Daylight saving time and circadian rhythms in the neuro-endocrine-immune system: impact on cardiovascular health. | Tarquini R, Carbone A, Martinez M, Mazzoccoli G | Internal and emergency medicine | 30488154 | Intern Emerg Med | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30488154 |
| Centring sexual and reproductive health and justice in the global COVID-19 response. | Hall KS, Samari G, Garbers S, Casey SE, Diallo DD, Orcutt M, Moresky RT, Martinez ME, McGovern T | Lancet (London, England) | 32278371 | Lancet | 2020 Apr 11 | https://www.ncbi.nlm.nih.gov/pubmed/32278371 |
| Socioeconomic Disparities in Subway Use and COVID-19 Outcomes in New York City. | Sy KTL, Martinez ME, Rader B, White LF | American journal of epidemiology | 33372209 | Am J Epidemiol | 2021 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/33372209 |
| Drivers of Infectious Disease Seasonality: Potential Implications for COVID-19. | Kronfeld-Schor N, Stevenson TJ, Nickbakhsh S, Schernhammer ES, Dopico XC, Dayan T, Martinez M, Helm B | Journal of biological rhythms | 33491541 | J Biol Rhythms | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33491541 |
| Characterizing the modern light environment and its influence on circadian rhythms. | Khodasevich D, Tsui S, Keung D, Skene DJ, Revell V, Martinez ME | Proceedings. Biological sciences | 34284625 | Proc Biol Sci | 2021 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/34284625 |
| Identifying optimal vaccination scenarios to reduce varicella zoster virus transmission and reactivation. | Bakker KM, Eisenberg MC, Woods RJ, Martinez ME | BMC medicine | 36209074 | BMC Med | 2022 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/36209074 |
| Social-distancing fatigue: Evidence from real-time crowd-sourced traffic data. | Shearston JA, Martinez ME, Nunez Y, Hilpert M | The Science of the total environment | 34153749 | Sci Total Environ | 2021 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/34153749 |
| Assessment of a Split Homing Based Gene Drive for Efficient Knockout of Multiple Genes. | Kandul NP, Liu J, Buchman A, Gantz VM, Bier E, Akbari OS | G3 (Bethesda, Md.) | 31882406 | G3 (Bethesda) | 2020 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/31882406 |
| A nickase Cas9 gene-drive system promotes super-Mendelian inheritance in Drosophila. | López Del Amo V, Juste SS, Gantz VM | Cell reports | 35613590 | Cell Rep | 2022 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/35613590 |
| Super-Mendelian inheritance mediated by CRISPR-Cas9 in the female mouse germline. | Grunwald HA, Gantz VM, Poplawski G, Xu XS, Bier E, Cooper KL | Nature | 30675057 | Nature | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30675057 |
| CopyCatchers are versatile active genetic elements that detect and quantify inter-homolog somatic gene conversion. | Li Z, Marcel N, Devkota S, Auradkar A, Hedrick SM, Gantz VM, Bier E | Nature communications | 33976171 | Nat Commun | 2021 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/33976171 |
| Evaluation of Gene Knockouts by CRISPR as Potential Targets for the Genetic Engineering of the Mosquito Culex quinquefasciatus. | Feng X, Kambic L, Nishimoto JHK, Reed FA, Denton JA, Sutton JT, Gantz VM | The CRISPR journal | 34280034 | CRISPR J | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34280034 |
| Beyond the eye: Kynurenine pathway impairment causes midgut homeostasis dysfunction and survival and reproductive costs in blood-feeding mosquitoes. | Bottino-Rojas V, Ferreira-Almeida I, Nunes RD, Feng X, Pham TB, Kelsey A, Carballar-Lejarazú R, Gantz V, Oliveira PL, James AA | Insect biochemistry and molecular biology | 34999199 | Insect Biochem Mol Biol | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34999199 |
| Targeting double-strand break indel byproducts with secondary guide RNAs improves Cas9 HDR-mediated genome editing efficiencies. | Bodai Z, Bishop AL, Gantz VM, Komor AC | Nature communications | 35534455 | Nat Commun | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/35534455 |
| CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. | Harvey-Samuel T, Feng X, Okamoto EM, Purusothaman DK, Leftwich PT, Alphey L, Gantz VM | Nature communications | 37985762 | Nat Commun | 2023 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/37985762 |
| A transcomplementing gene drive provides a flexible platform for laboratory investigation and potential field deployment. | López Del Amo V, Bishop AL, Sánchez C HM, Bennett JB, Feng X, Marshall JM, Bier E, Gantz VM | Nature communications | 31953404 | Nat Commun | 2020 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/31953404 |
| Gene editing technologies and applications for insects. | Gantz VM, Akbari OS | Current opinion in insect science | 30551769 | Curr Opin Insect Sci | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30551769 |
| Small-Molecule Control of Super-Mendelian Inheritance in Gene Drives. | López Del Amo V, Leger BS, Cox KJ, Gill S, Bishop AL, Scanlon GD, Walker JA, Gantz VM, Choudhary A | Cell reports | 32610142 | Cell Rep | 2020 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/32610142 |
| Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi. | Adolfi A, Gantz VM, Jasinskiene N, Lee HF, Hwang K, Terradas G, Bulger EA, Ramaiah A, Bennett JB, Emerson JJ, Marshall JM, Bier E, James AA | Nature communications | 33144570 | Nat Commun | 2020 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/33144570 |
| Double-tap gene drive uses iterative genome targeting to help overcome resistance alleles. | Bishop AL, López Del Amo V, Okamoto EM, Bodai Z, Komor AC, Gantz VM | Nature communications | 35534475 | Nat Commun | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/35534475 |
| Active Genetic Neutralizing Elements for Halting or Deleting Gene Drives. | Xu XS, Bulger EA, Gantz VM, Klanseck C, Heimler SR, Auradkar A, Bennett JB, Miller LA, Leahy S, Juste SS, Buchman A, Akbari OS, Marshall JM, Bier E | Molecular cell | 32949493 | Mol Cell | 2020 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/32949493 |
| CRISPR/Cas9 and active genetics-based trans-species replacement of the endogenous Drosophila kni-L2 CRM reveals unexpected complexity. | Xu XS, Gantz VM, Siomava N, Bier E | eLife | 29274230 | Elife | 2017 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/29274230 |
| Efficient allelic-drive in Drosophila. | Guichard A, Haque T, Bobik M, Xu XS, Klanseck C, Kushwah RBS, Berni M, Kaduskar B, Gantz VM, Bier E | Nature communications | 30967548 | Nat Commun | 2019 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/30967548 |
| Core commitments for field trials of gene drive organisms. | Long KC, Alphey L, Annas GJ, Bloss CS, Campbell KJ, Champer J, Chen CH, Choudhary A, Church GM, Collins JP, Cooper KL, Delborne JA, Edwards OR, Emerson CI, Esvelt K, Evans SW, Friedman RM, Gantz VM, Gould F, Hartley S, Heitman E, Hemingway J, Kanuka H, Kuzma J, Lavery JV, Lee Y, Lorenzen M, Lunshof JE, Marshall JM, Messer PW, Montell C, Oye KA, Palmer MJ, Papathanos PA, Paradkar PN, Piaggio AJ, Rasgon JL, Rašić G, Rudenko L, Saah JR, Scott MJ, Sutton JT, Vorsino AE, Akbari OS | Science (New York, N.Y.) | 33335055 | Science | 2020 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/33335055 |
| Optimized CRISPR tools and site-directed transgenesis towards gene drive development in Culex quinquefasciatus mosquitoes. | Feng X, López Del Amo V, Mameli E, Lee M, Bishop AL, Perrimon N, Gantz VM | Nature communications | 34017003 | Nat Commun | 2021 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/34017003 |
| CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. | Harvey-Samuel T, Feng X, Okamoto EM, Purusothaman DK, Leftwich PT, Alphey L, Gantz VM | bioRxiv : the preprint server for biology | 37398284 | bioRxiv | 2023 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/37398284 |
| High-throughput sequencing of the T cell receptor β gene identifies aggressive early-stage mycosis fungoides. | de Masson A, O'Malley JT, Elco CP, Garcia SS, Divito SJ, Lowry EL, Tawa M, Fisher DC, Devlin PM, Teague JE, Leboeuf NR, Kirsch IR, Robins H, Clark RA, Kupper TS | Science translational medicine | 29743350 | Sci Transl Med | 2018 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/29743350 |
| Implementation of Genetic Screening to Prevent Severe Cutaneous Adverse Drug Reactions Is Crucial-Rebuttal From the Devil's Antagonist-Reply. | Divito SJ | JAMA dermatology | 31851296 | JAMA Dermatol | 2020 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/31851296 |
| Histologic features of graft-versus-host disease-associated angiomatosis: Insights into pathophysiology and treatment. | Li DJ, Romar GA, Hsieh PC, Wells M, Foreman RK, Lian CG, Divito SJ | Journal of the American Academy of Dermatology | 31923444 | J Am Acad Dermatol | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31923444 |
| Corrigendum to 'SJS/TEN 2019: From science to translation' [J. Dermatol. Sci. 98/1 (2020) 2-12]. | Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC | Journal of dermatological science | 34763988 | J Dermatol Sci | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34763988 |
| Skin Resident Memory T Cells May Play Critical Role in Delayed-Type Drug Hypersensitivity Reactions. | Schunkert EM, Shah PN, Divito SJ | Frontiers in immunology | 34497600 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34497600 |
| Assessment of Need for Improved Identification of a Culprit Drug in Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis. | Li DJ, Velasquez GA, Romar GA, Schunkert EM, Foreman RK, Divito SJ | JAMA dermatology | 37342052 | JAMA Dermatol | 2023 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/37342052 |
| Survival of tissue-resident memory T cells requires exogenous lipid uptake and metabolism. | Pan Y, Tian T, Park CO, Lofftus SY, Mei S, Liu X, Luo C, O'Malley JT, Gehad A, Teague JE, Divito SJ, Fuhlbrigge R, Puigserver P, Krueger JG, Hotamisligil GS, Clark RA, Kupper TS | Nature | 28219080 | Nature | 2017 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/28219080 |
| Updates and Insights in the Diagnosis and Management of DRESS Syndrome. | Schunkert EM, Divito SJ | Current dermatology reports | 34777921 | Curr Dermatol Rep | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34777921 |
| HIV-Associated Immune Dysregulation in the Skin: A Crucible for Exaggerated Inflammation and Hypersensitivity. | Chimbetete T, Buck C, Choshi P, Selim R, Pedretti S, Divito SJ, Phillips EJ, Lehloenya R, Peter J | The Journal of investigative dermatology | 36549954 | J Invest Dermatol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36549954 |
| Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis-Coordinating Research Priorities to Move the Field Forward. | Phillips EJ, Bouchard CS, Divito SJ | JAMA dermatology | 35353140 | JAMA Dermatol | 2022 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/35353140 |
| Cross-Sectional Study Evaluating Skin, Hair, Nail, and Bone Disease in Patients with Focal Dermal Hypoplasia. | Gunasekera NS, Divito JK, Kupper TS, Huang JT, Divito SJ | Pediatric dermatology | 28025844 | Pediatr Dermatol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28025844 |
| Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis: Associations, Outcomes, and Pathobiology-Thirty Years of Progress but Still Much to Be Done. | Stern RS, Divito SJ | The Journal of investigative dermatology | 28411832 | J Invest Dermatol | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28411832 |
| Systemic and skin-limited delayed-type drug hypersensitivity reactions associate with distinct resident and recruited T cell subsets. | Shah PN, Romar GA, Manukyan A, Ko WC, Hsieh PC, Velasquez GA, Schunkert EM, Fu X, Guleria I, Bronson RT, Wei K, Waldman AH, Vleugels FR, Liang MG, Giobbie-Hurder A, Mostaghimi A, Schmidt BA, Barrera V, Foreman RK, Garber M, Divito SJ | The Journal of clinical investigation | 39042477 | J Clin Invest | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/39042477 |
| Screening HLA to Prevent Severe Drug Reactions-A Devil's Advocate Perspective. | Divito SJ | JAMA dermatology | 30916720 | JAMA Dermatol | 2019 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/30916720 |
| Physical and mental health impact of Stevens-Johnson syndrome/toxic epidermal necrolysis and post-hospital discharge care: Identifying practice gaps. | Coromilas AJ, Divito SJ, Phillips EJ, Micheletti RG | JAAD international | 36941915 | JAAD Int | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36941915 |
| Advances in the Pathomechanisms of Delayed Drug Hypersensitivity. | Wang CW, Divito SJ, Chung WH, Hung SI | Immunology and allergy clinics of North America | 35469623 | Immunol Allergy Clin North Am | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35469623 |
| Method of Generating Tolerogenic Maturation-Resistant Dendritic Cells and Testing for Their Immune-Regulatory Functions In Vivo in the Context of Transplantation. | Divito SJ, Morelli AE | Methods in molecular biology (Clifton, N.J.) | 30649773 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30649773 |
| SJS/TEN 2019: From science to translation. | Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC | Journal of dermatological science | 32192826 | J Dermatol Sci | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32192826 |
| Peripheral host T cells survive hematopoietic stem cell transplantation and promote graft-versus-host disease. | Divito SJ, Aasebø AT, Matos TR, Hsieh PC, Collin M, Elco CP, O'Malley JT, Bækkevold ES, Reims H, Gedde-Dahl T, Hagerstrom M, Hilaire J, Lian JW, Milford EL, Pinkus GS, Ho VT, Soiffer RJ, Kim HT, Mihm MC, Ritz J, Guleria I, Cutler CS, Clark RA, Jahnsen FL, Kupper TS | The Journal of clinical investigation | 32516138 | J Clin Invest | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32516138 |
| High-throughput identification of autoantibodies that target the human exoproteome. | Wang EY, Dai Y, Rosen CE, Schmitt MM, Dong MX, Ferré EMN, Liu F, Yang Y, González-Hernández JA, Meffre E, Hinchcliff M, Koumpouras F, Lionakis MS, Ring AM | Cell reports methods | 35360706 | Cell Rep Methods | 2022 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/35360706 |
| IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy. | Zhou T, Damsky W, Weizman OE, McGeary MK, Hartmann KP, Rosen CE, Fischer S, Jackson R, Flavell RA, Wang J, Sanmamed MF, Bosenberg MW, Ring AM | Nature | 32581358 | Nature | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32581358 |
| IL-18BP mediates the balance between protective and pathological immune responses to Toxoplasma gondii. | Clark JT, Weizman OE, Aldridge DL, Shallberg LA, Eberhard J, Lanzar Z, Wasche D, Huck JD, Zhou T, Ring AM, Hunter CA | Cell reports | 36827187 | Cell Rep | 2023 Mar 28 | https://www.ncbi.nlm.nih.gov/pubmed/36827187 |
| Yeast surface display platform for rapid discovery of conformationally selective nanobodies. | McMahon C, Baier AS, Pascolutti R, Wegrecki M, Zheng S, Ong JX, Erlandson SC, Hilger D, Rasmussen SGF, Ring AM, Manglik A, Kruse AC | Nature structural & molecular biology | 29434346 | Nat Struct Mol Biol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29434346 |
| Diverse Functional Autoantibodies in Patients with COVID-19. | Wang EY, Mao T, Klein J, Dai Y, Huck JD, Liu F, Zheng NS, Zhou T, Israelow B, Wong P, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Team, Cruz CD, Farhadian SF, Schulz WL, Grubaugh ND, Ko AI, Iwasaki A, Ring AM | medRxiv : the preprint server for health sciences | 33330894 | medRxiv | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/33330894 |
| Diverse functional autoantibodies in patients with COVID-19. | Wang EY, Mao T, Klein J, Dai Y, Huck JD, Jaycox JR, Liu F, Zhou T, Israelow B, Wong P, Coppi A, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Zheng NS, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Team, Dela Cruz C, Farhadian SF, Schulz WL, Ma S, Grubaugh ND, Ko AI, Iwasaki A, Ring AM | Nature | 34010947 | Nature | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34010947 |
| Transferrin receptor targeting by de novo sheet extension. | Sahtoe DD, Coscia A, Mustafaoglu N, Miller LM, Olal D, Vulovic I, Yu TY, Goreshnik I, Lin YR, Clark L, Busch F, Stewart L, Wysocki VH, Ingber DE, Abraham J, Baker D | Proceedings of the National Academy of Sciences of the United States of America | 33879614 | Proc Natl Acad Sci U S A | 2021 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/33879614 |
| Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses. | Clark LE, Mahmutovic S, Raymond DD, Dilanyan T, Koma T, Manning JT, Shankar S, Levis SC, Briggiler AM, Enria DA, Wucherpfennig KW, Paessler S, Abraham J | Nature communications | 29760382 | Nat Commun | 2018 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/29760382 |
| Age-Based Genomic Screening: Pediatric Providers' Perspectives on Implementation. | Waltz M, Foreman AKM, Gibson RA, Schilling S, Milko LV, Phillips R, O'Daniel JM, Giric S, Foss K, Branch EK, DeJong NA, Hernandez ML, Powell BC, Berg JS, Cadigan RJ, Roberts MC | Public health genomics | 40258355 | Public Health Genomics | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40258355 |
| Molecular organization of the New World arenavirus spike glycoprotein complex. | Mann CJ, Yang P, Olal D, Fan X, Smith KN, Clark LE, Krammer F, Bian Y, Abraham J | Nature microbiology | 40781447 | Nat Microbiol | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40781447 |
| Plant Cell-Cell Transport via Plasmodesmata Is Regulated by Light and the Circadian Clock. | Brunkard JO, Zambryski P | Plant physiology | 31601643 | Plant Physiol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31601643 |
| The Second Site Modifier, Sympathy for the ligule, Encodes a Homolog of Arabidopsis ENHANCED DISEASE RESISTANCE4 and Rescues the Liguleless narrow Maize Mutant. | Anderson A, St Aubin B, Abraham-Juárez MJ, Leiboff S, Shen Z, Briggs S, Brunkard JO, Hake S | The Plant cell | 31217219 | Plant Cell | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31217219 |
| Ties that bind: the integration of plastid signalling pathways in plant cell metabolism. | Brunkard JO, Burch-Smith TM | Essays in biochemistry | 29563221 | Essays Biochem | 2018 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/29563221 |
| Exaptive Evolution of Target of Rapamycin Signaling in Multicellular Eukaryotes. | Brunkard JO | Developmental cell | 32649861 | Dev Cell | 2020 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/32649861 |
| Quantifying Plasmodesmatal Transport with an Improved GFP Movement Assay. | Horner W, Brunkard JO | Methods in molecular biology (Clifton, N.J.) | 35349148 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35349148 |
| DRMY1 promotes robust morphogenesis in Arabidopsis by sustaining the translation of cytokinin-signaling inhibitor proteins. | Kong S, Zhu M, Scarpin MR, Pan D, Jia L, Martinez RE, Alamos S, Vadde BVL, Garcia HG, Qian SB, Brunkard JO, Roeder AHK | Developmental cell | 39305905 | Dev Cell | 2024 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/39305905 |
| Parallel global profiling of plant TOR dynamics reveals a conserved role for LARP1 in translation. | Scarpin MR, Leiboff S, Brunkard JO | eLife | 33054972 | Elife | 2020 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/33054972 |
| A Two-Headed Monster to Avert Disaster: HBS1/SKI7 Is Alternatively Spliced to Build Eukaryotic RNA Surveillance Complexes. | Brunkard JO, Baker B | Frontiers in plant science | 30258456 | Front Plant Sci | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30258456 |
| An updated nomenclature for plant ribosomal protein genes. | Scarpin MR, Busche M, Martinez RE, Harper LC, Reiser L, Szakonyi D, Merchante C, Lan T, Xiong W, Mo B, Tang G, Chen X, Bailey-Serres J, Browning KS, Brunkard JO | The Plant cell | 36423343 | Plant Cell | 2023 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/36423343 |
| Liguleless narrow and narrow odd dwarf act in overlapping pathways to regulate maize development and metabolism. | Abraham-Juárez MJ, Busche M, Anderson AA, Lunde C, Winders J, Christensen SA, Hunter CT, Hake S, Brunkard JO | The Plant journal : for cell and molecular biology | 36164819 | Plant J | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36164819 |
| Editorial overview: Cell biology. | Gallagher KL, Brunkard JO | Current opinion in plant biology | 33342469 | Curr Opin Plant Biol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33342469 |
| TOR coordinates nucleotide availability with ribosome biogenesis in plants. | Busche M, Scarpin MR, Hnasko R, Brunkard JO | The Plant cell | 33793860 | Plant Cell | 2021 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/33793860 |
| Terminal ear 1 and phytochromes B1/B2 regulate maize leaf initiation independently. | Busche M, Hake S, Brunkard JO | Genetics | 36495288 | Genetics | 2023 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/36495288 |
| Chloroplast redox state changes mark cell-to-cell signaling in the hypersensitive response. | Lukan T, Županič A, Mahkovec Povalej T, Brunkard JO, Kmetič M, Juteršek M, Baebler Š, Gruden K | The New phytologist | 35946378 | New Phytol | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35946378 |
| Translating across kingdoms: target of rapamycin promotes protein synthesis through conserved and divergent pathways in plants. | Scarpin MR, Simmons CH, Brunkard JO | Journal of experimental botany | 35770874 | J Exp Bot | 2022 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/35770874 |
| LncRNA gets into the balancing act. | Li F, Brunkard JO, Baker B | Cell host & microbe | 35952640 | Cell Host Microbe | 2022 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/35952640 |
| Stress management: how NOD and LGN coordinate growth-defence tradeoffs in maize. | Pierroz G | The Plant journal : for cell and molecular biology | 36415090 | Plant J | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36415090 |
| Light regulates alternative splicing outcomes via the TOR kinase pathway. | Riegler S, Servi L, Scarpin MR, Godoy Herz MA, Kubaczka MG, Venhuizen P, Meyer C, Brunkard JO, Kalyna M, Barta A, Petrillo E | Cell reports | 34496244 | Cell Rep | 2021 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/34496244 |
| Cytokinins Stimulate Plasmodesmatal Transport in Leaves. | Horner W, Brunkard JO | Frontiers in plant science | 34135930 | Front Plant Sci | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34135930 |
| TOR dynamically regulates plant cell-cell transport. | Brunkard JO, Xu M, Scarpin MR, Chatterjee S, Shemyakina EA, Goodman HM, Zambryski P | Proceedings of the National Academy of Sciences of the United States of America | 32051250 | Proc Natl Acad Sci U S A | 2020 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/32051250 |
| Amino Acid Signaling for TOR in Eukaryotes: Sensors, Transducers, and a Sustainable Agricultural fuTORe. | Lutt N, Brunkard JO | Biomolecules | 35327579 | Biomolecules | 2022 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/35327579 |
| ConducTORs of a Signaling Symphony: Metabolic and Hormone Responses Converge on TOR and EIN2 in plants. | Brunkard JO, Chang C, Mayer BJ, Meyer C, Sheen J | Faculty reviews | 35719129 | Fac Rev | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35719129 |
| Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer. | Akdemir KC, Le VT, Chandran S, Li Y, Verhaak RG, Beroukhim R, Campbell PJ, Chin L, Dixon JR, Futreal PA, PCAWG Structural Variation Working Group, PCAWG Consortium | Nature genetics | 32024999 | Nat Genet | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32024999 |
| Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity. | Liu Z, Lee DS, Liang Y, Zheng Y, Dixon JR | Nature communications | 37932264 | Nat Commun | 2023 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/37932264 |
| Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure. | Akdemir KC, Le VT, Kim JM, Killcoyne S, King DA, Lin YP, Tian Y, Inoue A, Amin SB, Robinson FS, Nimmakayalu M, Herrera RE, Lynn EJ, Chan K, Seth S, Klimczak LJ, Gerstung M, Gordenin DA, O'Brien J, Li L, Deribe YL, Verhaak RG, Campbell PJ, Fitzgerald R, Morrison AJ, Dixon JR, Andrew Futreal P | Nature genetics | 33020667 | Nat Genet | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33020667 |
| Structural variants drive context-dependent oncogene activation in cancer. | Xu Z, Lee DS, Chandran S, Le VT, Bump R, Yasis J, Dallarda S, Marcotte S, Clock B, Haghani N, Cho CY, Akdemir KC, Tyndale S, Futreal PA, McVicker G, Wahl GM, Dixon JR | Nature | 36477537 | Nature | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36477537 |
| 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma. | Okonechnikov K, Camgöz A, Chapman O, Wani S, Park DE, Hübner JM, Chakraborty A, Pagadala M, Bump R, Chandran S, Kraft K, Acuna-Hidalgo R, Reid D, Sikkink K, Mauermann M, Juarez EF, Jenseit A, Robinson JT, Pajtler KW, Milde T, Jäger N, Fiesel P, Morgan L, Sridhar S, Coufal NG, Levy M, Malicki D, Hobbs C, Kingsmore S, Nahas S, Snuderl M, Crawford J, Wechsler-Reya RJ, Davidson TB, Cotter J, Michaiel G, Fleischhack G, Mundlos S, Schmitt A, Carter H, Michealraj KA, Kumar SA, Taylor MD, Rich J, Buchholz F, Mesirov JP, Pfister SM, Ay F, Dixon JR, Kool M, Chavez L | Nature communications | 37085539 | Nat Commun | 2023 Apr 21 | https://www.ncbi.nlm.nih.gov/pubmed/37085539 |
| Genome reconstruction and haplotype phasing using chromosome conformation capture methodologies. | Xu Z, Dixon JR | Briefings in functional genomics | 31875884 | Brief Funct Genomics | 2020 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/31875884 |
| Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF. | Yang Y, Zhang Y, Ren B, Dixon JR, Ma J | Cell systems | 31229558 | Cell Syst | 2019 Jun 26 | https://www.ncbi.nlm.nih.gov/pubmed/31229558 |
| Simultaneous profiling of 3D genome structure and DNA methylation in single human cells. | Lee DS, Luo C, Zhou J, Chandran S, Rivkin A, Bartlett A, Nery JR, Fitzpatrick C, O'Connor C, Dixon JR, Ecker JR | Nature methods | 31501549 | Nat Methods | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31501549 |
| Coming full circle: On the origin and evolution of the looping model for enhancer-promoter communication. | Popay TM, Dixon JR | The Journal of biological chemistry | 35691341 | J Biol Chem | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35691341 |
| Analysis of Hi-C Data for Discovery of Structural Variations in Cancer. | Song F, Xu J, Dixon J, Yue F | Methods in molecular biology (Clifton, N.J.) | 34415534 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/34415534 |
| Dynamic regulation of histone modifications and long-range chromosomal interactions during postmitotic transcriptional reactivation. | Kang H, Shokhirev MN, Xu Z, Chandran S, Dixon JR, Hetzer MW | Genes & development | 32499403 | Genes Dev | 2020 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/32499403 |
| Incorporation of a nucleoside analog maps genome repair sites in postmitotic human neurons. | Reid DA, Reed PJ, Schlachetzki JCM, Nitulescu II, Chou G, Tsui EC, Jones JR, Chandran S, Lu AT, McClain CA, Ooi JH, Wang TW, Lana AJ, Linker SB, Ricciardulli AS, Lau S, Schafer ST, Horvath S, Dixon JR, Hah N, Glass CK, Gage FH | Science (New York, N.Y.) | 33795458 | Science | 2021 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/33795458 |
| Foxp3 Orchestrates Reorganization of Chromatin Architecture to Establish Regulatory T Cell Identity. | Liu Z, Lee DS, Liang Y, Zheng Y, Dixon JR | bioRxiv : the preprint server for biology | 36865315 | bioRxiv | 2023 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/36865315 |
| Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data. | Yang Y, Gu Q, Zhang Y, Sasaki T, Crivello J, O'Neill RJ, Gilbert DM, Ma J | Cell systems | 29936186 | Cell Syst | 2018 Aug 22 | https://www.ncbi.nlm.nih.gov/pubmed/29936186 |
| Integrative detection and analysis of structural variation in cancer genomes. | Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F | Nature genetics | 30202056 | Nat Genet | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30202056 |
| Reduced synaptic activity and dysregulated extracellular matrix pathways in midbrain neurons from Parkinson's disease patients. | Stern S, Lau S, Manole A, Rosh I, Percia MM, Ben Ezer R, Shokhirev MN, Qiu F, Schafer S, Mansour AA, Mangan KP, Stern T, Ofer P, Stern Y, Diniz Mendes AP, Djamus J, Moore LR, Nayak R, Laufer SH, Aicher A, Rhee A, Wong TL, Nguyen T, Linker SB, Winner B, Freitas BC, Jones E, Sagi I, Bardy C, Brice A, Winkler J, Marchetto MC, Gage FH | NPJ Parkinson's disease | 35948563 | NPJ Parkinsons Dis | 2022 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/35948563 |
| Trypanosoma brucei. | Romero-Meza G, Mugnier MR | Trends in parasitology | 31757771 | Trends Parasitol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31757771 |
| Thinking outside the blood: Perspectives on tissue-resident Trypanosoma brucei. | Crilly NP, Mugnier MR | PLoS pathogens | 34529724 | PLoS Pathog | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34529724 |
| DNA damage drives antigen diversification through mosaic Variant Surface Glycoprotein (VSG) formation in Trypanosoma brucei. | Smith JE, Wang KJ, Kennedy EM, Hakim JMC, So J, Beaver AK, Magesh A, Gilligan-Steinberg SD, Zheng J, Zhang B, Moorthy DN, Akin EH, Mwakibete L, Mugnier MR | bioRxiv : the preprint server for biology | 39253459 | bioRxiv | 2024 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/39253459 |
| Tissue spaces are reservoirs of antigenic diversity for Trypanosoma brucei. | Beaver AK, Keneskhanova Z, Cosentino RO, Weiss BL, Awuoche EO, Smallenberger GM, Buenconsejo GY, Crilly NP, Smith JE, Hakim JMC, Zhang B, Bobb B, Rijo-Ferreira F, Figueiredo LM, Aksoy S, Siegel TN, Mugnier MR | Nature | 39478231 | Nature | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39478231 |
| Developmental competence and antigen switch frequency can be uncoupled in Trypanosoma brucei. | McWilliam KR, Ivens A, Morrison LJ, Mugnier MR, Matthews KR | Proceedings of the National Academy of Sciences of the United States of America | 31636179 | Proc Natl Acad Sci U S A | 2019 Nov 5 | https://www.ncbi.nlm.nih.gov/pubmed/31636179 |
| Emerging challenges in understanding trypanosome antigenic variation. | McCulloch R, Cobbold CA, Figueiredo L, Jackson A, Morrison LJ, Mugnier MR, Papavasiliou N, Schnaufer A, Matthews K | Emerging topics in life sciences | 30271884 | Emerg Top Life Sci | 2017 Dec 22 | https://www.ncbi.nlm.nih.gov/pubmed/30271884 |
| VSGs Expressed during Natural T. b. gambiense Infection Exhibit Extensive Sequence Divergence and a Subspecies-Specific Bias towards Type B N-Terminal Domains. | So J, Sudlow S, Sayeed A, Grudda T, Deborggraeve S, Ngoyi DM, Desamber DK, Wickstead B, Lejon V, Mugnier MR | mBio | 36354333 | mBio | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36354333 |
| Smoke Shop Misclassification May Cloud Studies on Vape Shop Density. | Giovenco DP | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 28605478 | Nicotine Tob Res | 2018 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/28605478 |
| Prevalence of population smoking cessation by electronic cigarette use status in a national sample of recent smokers. | Giovenco DP, Delnevo CD | Addictive behaviors | 28802179 | Addict Behav | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28802179 |
| Different Smokes for Different Folks? E-Cigarettes and Tobacco Disparities. | Giovenco DP | American journal of public health | 31390250 | Am J Public Health | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31390250 |
| Improving Efficiency in Mobile Data Collection for Place-Based Public Health Research. | Giovenco DP, Spillane TE | American journal of public health | 30785801 | Am J Public Health | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30785801 |
| Content analysis of instagram posts by leading cannabis vaporizer brands. | Spillane TE, Wong BA, Giovenco DP | Drug and alcohol dependence | 33109462 | Drug Alcohol Depend | 2021 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/33109462 |
| Changes in Pack Features Among Top-Selling Cigarettes in the U.S., 2018 and 2021. | Giovenco DP, Ganz O, Spillane TE, Easter AG, Wackowski OA, Villanti AC, Strasser AA, Delnevo CD | American journal of preventive medicine | 37295659 | Am J Prev Med | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37295659 |
| Packaging Characteristics of Top-Selling Cigars in the United States, 2018. | Giovenco DP, Spillane TE, Talbot E, Wackowski OA, Audrain-McGovern J, Ganz O, Delnevo CD | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 35287167 | Nicotine Tob Res | 2022 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/35287167 |
| Assessment of Menthol and Nonmenthol Cigarette Consumption in the US, 2000 to 2018. | Delnevo CD, Giovenco DP, Villanti AC | JAMA network open | 32766798 | JAMA Netw Open | 2020 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/32766798 |
| White Owl launches sweepstakes to promote new dessert-flavoured cigar. | Safi Z, Ganz O, Giovenco DP, Delnevo C, Lewis MJ | Tobacco control | 34031226 | Tob Control | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34031226 |
| Bayesian Inference: Understanding Experimental Data With Informative Hypotheses. | Baig SA | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 32610347 | Nicotine Tob Res | 2020 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/32610347 |
| Cigarillo sales in legalized marijuana markets in the U.S. | Giovenco DP, Spillane TE, Mauro CM, Martins SS | Drug and alcohol dependence | 29500953 | Drug Alcohol Depend | 2018 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/29500953 |
| Camel Crush pack inserts cross-promote Vuse menthol e-cigarettes ahead of impending menthol cigarette ban. | Giovenco DP, Ganz O, Chen-Sankey J, Delnevo CD | Tobacco control | 37702704 | Tob Control | 2024 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/37702704 |
| Behavioral heterogeneity among cigarette and e-cigarette dual-users and associations with future tobacco use: Findings from the Population Assessment of Tobacco and Health Study. | Baig SA, Giovenco DP | Addictive behaviors | 32028096 | Addict Behav | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32028096 |
| Is nicotine vaping associated with subsequent initiation of cannabis or other substances from adolescence into young adulthood? | Perlmutter AS, Keyes KM, Giovenco D, Martins SS, Rudolph KE | American journal of epidemiology | 38988255 | Am J Epidemiol | 2025 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/38988255 |
| Evaluating the impact and equity of a tobacco-free pharmacy law on retailer density in New York City neighbourhoods. | Giovenco DP, Spillane TE, Mauro CM, Hernández D | Tobacco control | 30135112 | Tob Control | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30135112 |
| Characteristics of storefront tobacco advertisements and differences by product type: A content analysis of retailers in New York City, USA. | Giovenco DP, Spillane TE, Wong BA, Wackowski OA | Preventive medicine | 30930262 | Prev Med | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30930262 |
| Natural American Spirit launches 'Sky', the brand's first commercial organic cigarette with a charcoal filter. | Pearson J, Giovenco DP, Lewis MJ, Moran M, Ganz O | Tobacco control | 34593613 | Tob Control | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/34593613 |
| Cross-promotion of nicotine pouches by leading cigarette brands. | Talbot EM, Giovenco DP, Grana R, Hrywna M, Ganz O | Tobacco control | 34670870 | Tob Control | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34670870 |
| Demographic and psychological moderators of the relationship between neighborhood cigarette advertising and current smoking in New York City. | Giovenco DP, Spillane TE, Baig SA, Dumas SE, Dongchung TY, Sanderson M, Sisti JS, Farley SM, Jasek JP, Seligson AL | Health & place | 32947186 | Health Place | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32947186 |
| Predictive Validity of Tobacco Product Advertising and Retail Availability. | Giovenco DP, Spillane TE, Delnevo CD | Tobacco regulatory science | 31824986 | Tob Regul Sci | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31824986 |
| Medical cannabis laws and medical and non-medical prescription stimulant use among a nationally representative sample of US Adults: Examining the role of sexual identity and gender. | Philbin MM, Mauro PM, Greene ER, LaBossier NJ, Giovenco DP, Martins SS | The International journal on drug policy | 32717704 | Int J Drug Policy | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32717704 |
| Changes in the availability and promotion of non-cigarette tobacco products near high schools in New Jersey, USA. | Giovenco DP, Ackerman C, Hrywna M, Delnevo CD | Tobacco control | 28798262 | Tob Control | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28798262 |
| Neighborhood Differences in Alternative Tobacco Product Availability and Advertising in New York City: Implications for Health Disparities. | Giovenco DP, Spillane TE, Merizier JM | Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco | 30452712 | Nicotine Tob Res | 2019 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/30452712 |
| Blowing the lid off: an analysis of interior cigarette pack features and marketing strategies. | Giovenco DP, Spillane TE, Lewis MJ | Tobacco control | 32675249 | Tob Control | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32675249 |
| Multi-level drivers of tobacco use and purchasing behaviors during COVID-19 "lockdown": A qualitative study in the United States. | Giovenco DP, Spillane TE, Maggi RM, Lee EY, Philbin MM | The International journal on drug policy | 33662811 | Int J Drug Policy | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33662811 |
| Impact of menthol capsule cigarettes on menthol and non-menthol cigarette consumption in the USA, 2008-2020. | Delnevo CD, Giovenco DP, Villanti AC | Tobacco control | 35537814 | Tob Control | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35537814 |
| Commentary on Weinberger et al.: Tobacco and cannabis policies as drivers of nicotine and cannabis co-use - research and measurement implications to move the field forward. | Philbin MM, Giovenco DP, Mauro PM | Addiction (Abingdon, England) | 35362234 | Addiction | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35362234 |
| IQOS print magazine advertising characteristics and reach before and after FDA authorisation as a modified risk tobacco product. | Ganz O, Strasser AA, Giovenco DP, Audrain-McGovern J, Cappella JN, Safi Z, Tan ASL, Talbot EM, Delnevo CD | Tobacco control | 36958825 | Tob Control | 2024 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/36958825 |
| Internalizing problems are associated with initiation and past 30-Day use of flavored tobacco products. | Ganz O, Cohn AM, Goodwin RD, Giovenco DP, Wackowski OA, Talbot EM, Delnevo CD | Addictive behaviors | 34763300 | Addict Behav | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34763300 |
| Cigar Sales in Convenience Stores in the US, 2009-2020. | Delnevo CD, Miller Lo E, Giovenco DP, Cornacchione Ross J, Hrywna M, Strasser AA | JAMA | 34932088 | JAMA | 2021 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/34932088 |
| Autocrine TGFβ Is a Survival Factor for Monocytes and Drives Immunosuppressive Lineage Commitment. | Gonzalez-Junca A, Driscoll KE, Pellicciotta I, Du S, Lo CH, Roy R, Parry R, Tenvooren I, Marquez DM, Spitzer MH, Barcellos-Hoff MH | Cancer immunology research | 30538091 | Cancer Immunol Res | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30538091 |
| A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites. | Dodd D, Spitzer MH, Van Treuren W, Merrill BD, Hryckowian AJ, Higginbottom SK, Le A, Cowan TM, Nolan GP, Fischbach MA, Sonnenburg JL | Nature | 29168502 | Nature | 2017 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/29168502 |
| Systemic dysfunction and plasticity of the immune macroenvironment in cancer models. | Allen BM, Hiam KJ, Burnett CE, Venida A, DeBarge R, Tenvooren I, Marquez DM, Cho NW, Carmi Y, Spitzer MH | Nature medicine | 32451499 | Nat Med | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32451499 |
| Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types. | Fragiadakis GK, Bjornson-Hooper ZB, Madhireddy D, Sachs K, Chen H, McIlwain DR, Spitzer MH, Bendall SC, Nolan GP | Frontiers in immunology | 35419006 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35419006 |
| A Comprehensive Atlas of Immunological Differences Between Humans, Mice, and Non-Human Primates. | Bjornson-Hooper ZB, Fragiadakis GK, Spitzer MH, Chen H, Madhireddy D, Hu K, Lundsten K, McIlwain DR, Nolan GP | Frontiers in immunology | 35359965 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35359965 |
| Systemic immunity in cancer. | Hiam-Galvez KJ, Allen BM, Spitzer MH | Nature reviews. Cancer | 33837297 | Nat Rev Cancer | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33837297 |
| Functional CRISPR dissection of gene networks controlling human regulatory T cell identity. | Schumann K, Raju SS, Lauber M, Kolb S, Shifrut E, Cortez JT, Skartsis N, Nguyen VQ, Woo JM, Roth TL, Yu R, Nguyen MLT, Simeonov DR, Nguyen DN, Targ S, Gate RE, Tang Q, Bluestone JA, Spitzer MH, Ye CJ, Marson A | Nature immunology | 32989329 | Nat Immunol | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32989329 |
| Cellular architecture of human brain metastases. | Gonzalez H, Mei W, Robles I, Hagerling C, Allen BM, Hauge Okholm TL, Nanjaraj A, Verbeek T, Kalavacherla S, van Gogh M, Georgiou S, Daras M, Phillips JJ, Spitzer MH, Roose JP, Werb Z | Cell | 35063085 | Cell | 2022 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/35063085 |
| Engineered Tumor-Targeted T Cells Mediate Enhanced Anti-Tumor Efficacy Both Directly and through Activation of the Endogenous Immune System. | Avanzi MP, Yeku O, Li X, Wijewarnasuriya DP, van Leeuwen DG, Cheung K, Park H, Purdon TJ, Daniyan AF, Spitzer MH, Brentjens RJ | Cell reports | 29768210 | Cell Rep | 2018 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/29768210 |
| T Cells Instruct Immune Checkpoint Inhibitor Therapy Resistance in Tumors Responsive to IL1 and TNFα Inflammation. | Cho NW, Guldberg SM, Nabet BY, Yu JZ, Kim EJ, Hiam-Galvez KJ, Yee JL, DeBarge R, Tenvooren I, Ashitey NA, Lynce F, Dillon DA, Rosenbluth JM, Spitzer MH | Cancer immunology research | 39404741 | Cancer Immunol Res | 2025 Feb 3 | https://www.ncbi.nlm.nih.gov/pubmed/39404741 |
| Depletion of microbiome-derived molecules in the host using Clostridium genetics. | Guo CJ, Allen BM, Hiam KJ, Dodd D, Van Treuren W, Higginbottom S, Nagashima K, Fischer CR, Sonnenburg JL, Spitzer MH, Fischbach MA | Science (New York, N.Y.) | 31831639 | Science | 2019 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/31831639 |
| Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy. | Hartmann FJ, Babdor J, Gherardini PF, Amir ED, Jones K, Sahaf B, Marquez DM, Krutzik P, O'Donnell E, Sigal N, Maecker HT, Meyer E, Spitzer MH, Bendall SC | Cell reports | 31315057 | Cell Rep | 2019 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/31315057 |
| Dynamic CD8(+) T cell responses to cancer immunotherapy in human regional lymph nodes are disrupted in metastatic lymph nodes. | Rahim MK, Okholm TLH, Jones KB, McCarthy EE, Liu CC, Yee JL, Tamaki SJ, Marquez DM, Tenvooren I, Wai K, Cheung A, Davidson BR, Johri V, Samad B, O'Gorman WE, Krummel MF, van Zante A, Combes AJ, Angelo M, Fong L, Algazi AP, Ha P, Spitzer MH | Cell | 36931243 | Cell | 2023 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/36931243 |
| A cytotoxic-skewed immune set point predicts low neutralizing antibody levels after Zika virus infection. | McCarthy EE, Odorizzi PM, Lutz E, Smullin CP, Tenvooren I, Stone M, Simmons G, Hunt PW, Feeney ME, Norris PJ, Busch MP, Spitzer MH, Rutishauser RL | Cell reports | 35584677 | Cell Rep | 2022 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/35584677 |
| Single-cell analysis by mass cytometry reveals metabolic states of early-activated CD8(+) T cells during the primary immune response. | Levine LS, Hiam-Galvez KJ, Marquez DM, Tenvooren I, Madden MZ, Contreras DC, Dahunsi DO, Irish JM, Oluwole OO, Rathmell JC, Spitzer MH | Immunity | 33705706 | Immunity | 2021 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/33705706 |
| ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network. | Atallah MB, Tandon V, Hiam KJ, Boyce H, Hori M, Atallah W, Spitzer MH, Engleman E, Mallick P | BMC bioinformatics | 32778050 | BMC Bioinformatics | 2020 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/32778050 |
| Systemic Immunity Is Required for Effective Cancer Immunotherapy. | Spitzer MH, Carmi Y, Reticker-Flynn NE, Kwek SS, Madhireddy D, Martins MM, Gherardini PF, Prestwood TR, Chabon J, Bendall SC, Fong L, Nolan GP, Engleman EG | Cell | 28111070 | Cell | 2017 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/28111070 |
| Scalable Conjugation and Characterization of Immunoglobulins with Stable Mass Isotope Reporters for Single-Cell Mass Cytometry Analysis. | Hartmann FJ, Simonds EF, Vivanco N, Bruce T, Borges L, Nolan GP, Spitzer MH, Bendall SC | Methods in molecular biology (Clifton, N.J.) | 31077099 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31077099 |
| Pre-existing immune status associated with response to combination of sipuleucel-T and ipilimumab in patients with metastatic castration-resistant prostate cancer. | Sinha M, Zhang L, Subudhi S, Chen B, Marquez J, Liu EV, Allaire K, Cheung A, Ng S, Nguyen C, Friedlander TW, Aggarwal R, Spitzer M, Allison JP, Small EJ, Sharma P, Fong L | Journal for immunotherapy of cancer | 33986125 | J Immunother Cancer | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33986125 |
| SCITO-seq: single-cell combinatorial indexed cytometry sequencing. | Hwang B, Lee DS, Tamaki W, Sun Y, Ogorodnikov A, Hartoularos GC, Winters A, Yeung BZ, Nazor KL, Song YS, Chow ED, Spitzer MH, Ye CJ | Nature methods | 34354295 | Nat Methods | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34354295 |
| An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike. | Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, García-Sastre A, Ott M, Vignuzzi M, QCRG Structural Biology Consortium, Walter P, Manglik A | Science (New York, N.Y.) | 33154106 | Science | 2020 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/33154106 |
| Biochemical Assays to Directly Assess Smoothened Activation by a Conformationally Sensitive Nanobody. | Deshpande I, Manglik A | Methods in molecular biology (Clifton, N.J.) | 34562250 | Methods Mol Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/34562250 |
| Structural Basis for G Protein-Coupled Receptor Activation. | Manglik A, Kruse AC | Biochemistry | 28967738 | Biochemistry | 2017 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/28967738 |
| An ultra-potent synthetic nanobody neutralizes SARS-CoV-2 by locking Spike into an inactive conformation. | Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, García-Sastre A, Ott M, Vignuzzi M, QCRG Structural Biology Consortium, Walter P, Manglik A | bioRxiv : the preprint server for biology | 32817938 | bioRxiv | 2020 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/32817938 |
| Agonist-selective recruitment of engineered protein probes and of GRK2 by opioid receptors in living cells. | Stoeber M, Jullié D, Li J, Chakraborty S, Majumdar S, Lambert NA, Manglik A, von Zastrow M | eLife | 32096468 | Elife | 2020 Feb 25 | https://www.ncbi.nlm.nih.gov/pubmed/32096468 |
| Hedgehog pathway activation through nanobody-mediated conformational blockade of the Patched sterol conduit. | Zhang Y, Lu WJ, Bulkley DP, Liang J, Ralko A, Han S, Roberts KJ, Li A, Cho W, Cheng Y, Manglik A, Beachy PA | Proceedings of the National Academy of Sciences of the United States of America | 33139559 | Proc Natl Acad Sci U S A | 2020 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/33139559 |
| Discrete GPCR-triggered endocytic modes enable β-arrestins to flexibly regulate cell signaling. | Barsi-Rhyne B, Manglik A, von Zastrow M | eLife | 36250629 | Elife | 2022 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/36250629 |
| Structure of hepcidin-bound ferroportin reveals iron homeostatic mechanisms. | Billesbølle CB, Azumaya CM, Kretsch RC, Powers AS, Gonen S, Schneider S, Arvedson T, Dror RO, Cheng Y, Manglik A | Nature | 32814342 | Nature | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32814342 |
| Smoothened stimulation by membrane sterols drives Hedgehog pathway activity. | Deshpande I, Liang J, Hedeen D, Roberts KJ, Zhang Y, Ha B, Latorraca NR, Faust B, Dror RO, Beachy PA, Myers BR, Manglik A | Nature | 31263273 | Nature | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31263273 |
| Autoantibody mimicry of hormone action at the thyrotropin receptor. | Faust B, Billesbølle CB, Suomivuori CM, Singh I, Zhang K, Hoppe N, Pinto AFM, Diedrich JK, Muftuoglu Y, Szkudlinski MW, Saghatelian A, Dror RO, Cheng Y, Manglik A | Nature | 35940205 | Nature | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35940205 |
| Molecular Basis of Opioid Action: From Structures to New Leads. | Manglik A | Biological psychiatry | 31653480 | Biol Psychiatry | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31653480 |
| Protein design and variant prediction using autoregressive generative models. | Shin JE, Riesselman AJ, Kollasch AW, McMahon C, Simon E, Sander C, Manglik A, Kruse AC, Marks DS | Nature communications | 33893299 | Nat Commun | 2021 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/33893299 |
| Selective G protein signaling driven by substance P-neurokinin receptor dynamics. | Harris JA, Faust B, Gondin AB, Dämgen MA, Suomivuori CM, Veldhuis NA, Cheng Y, Dror RO, Thal DM, Manglik A | Nature chemical biology | 34711980 | Nat Chem Biol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34711980 |
| Ecology of the cardiovascular system: Part II - A focus on non-air related pollutants. | Argacha JF, Mizukami T, Bourdrel T, Bind MA | Trends in cardiovascular medicine | 30224235 | Trends Cardiovasc Med | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/30224235 |
| Bridging observational studies and randomized experiments by embedding the former in the latter. | Bind MC, Rubin DB | Statistical methods in medical research | 29187059 | Stat Methods Med Res | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29187059 |
| Racial and Ethnic Disparities in Early Childhood Obesity. | Isong IA, Rao SR, Bind MA, Avendaño M, Kawachi I, Richmond TK | Pediatrics | 29269386 | Pediatrics | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29269386 |
| Cardiovascular effects of air pollution. | Bourdrel T, Bind MA, Béjot Y, Morel O, Argacha JF | Archives of cardiovascular diseases | 28735838 | Arch Cardiovasc Dis | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28735838 |
| Randomization-based inference for Bernoulli trial experiments and implications for observational studies. | Branson Z, Bind MA | Statistical methods in medical research | 29451089 | Stat Methods Med Res | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/29451089 |
| When possible, report a Fisher-exact P value and display its underlying null randomization distribution. | Bind MC, Rubin DB | Proceedings of the National Academy of Sciences of the United States of America | 32703808 | Proc Natl Acad Sci U S A | 2020 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/32703808 |
| The role of body mass index at diagnosis of colorectal cancer on Black-White disparities in survival: a density regression mediation approach. | Devick KL, Valeri L, Chen J, Jara A, Bind MA, Coull BA | Biostatistics (Oxford, England) | 32968805 | Biostatistics | 2022 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/32968805 |
| Heterogeneous ozone effects on the DNA methylome of bronchial cells observed in a crossover study. | Bind MC, Rubin DB, Cardenas A, Dhingra R, Ward-Caviness C, Liu Z, Mirowsky J, Schwartz JD, Diaz-Sanchez D, Devlin RB | Scientific reports | 32978449 | Sci Rep | 2020 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/32978449 |
| The role of family history of Cancer in Oral Cavity Cancer. | Fantozzi PJ, Bavarian R, Tamayo I, Bind MA, Woo SB, Villa A | Head & face medicine | 34809651 | Head Face Med | 2021 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/34809651 |
| County-level associations between drinking water PFAS contamination and COVID-19 mortality in the United States. | Liddie JM, Bind MA, Karra M, Sunderland EM | Journal of exposure science & environmental epidemiology | 39369072 | J Expo Sci Environ Epidemiol | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/39369072 |
| Educational Interventions on Human Papillomavirus for Oral Health Providers. | Pampena E, Vanucci R, Johnson LB, Bind MA, Tamayo I, Welch K, Lind E, Wagner R, Villa A | Journal of cancer education : the official journal of the American Association for Cancer Education | 30868480 | J Cancer Educ | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30868480 |
| Synthesis of Harvard Environmental Protection Agency (EPA) Center studies on traffic-related particulate pollution and cardiovascular outcomes in the Greater Boston Area. | Jhun I, Kim J, Cho B, Gold DR, Schwartz J, Coull BA, Zanobetti A, Rice MB, Mittleman MA, Garshick E, Vokonas P, Bind MA, Wilker EH, Dominici F, Suh H, Koutrakis P | Journal of the Air & Waste Management Association (1995) | 30888266 | J Air Waste Manag Assoc | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30888266 |
| Effect modification of ambient particle mortality by radon: A time series analysis in 108 U.S. cities. | Blomberg AJ, Coull BA, Jhun I, Vieira CLZ, Zanobetti A, Garshick E, Schwartz J, Koutrakis P | Journal of the Air & Waste Management Association (1995) | 30230977 | J Air Waste Manag Assoc | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30230977 |
| An educational intervention on HPV knowledge and comfortability discussing vaccination among oral health care professionals of the American Indian and Alaskan Native population. | Salous MH, Bind MA, Granger L, Johnson LB, Welch K, Villa A | Human vaccines & immunotherapeutics | 32401662 | Hum Vaccin Immunother | 2020 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/32401662 |
| Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts. | Sturm G, Cardenas A, Bind MA, Horvath S, Wang S, Wang Y, Hägg S, Hirano M, Picard M | Epigenetics | 31156022 | Epigenetics | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31156022 |
| County-level radon exposure and all-cause mortality risk among Medicare beneficiaries. | Yitshak-Sade M, Blomberg AJ, Zanobetti A, Schwartz JD, Coull BA, Kloog I, Dominici F, Koutrakis P | Environment international | 31200153 | Environ Int | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31200153 |
| The Role of Ambient Particle Radioactivity in Inflammation and Endothelial Function in an Elderly Cohort. | Blomberg AJ, Nyhan MM, Bind MA, Vokonas P, Coull BA, Schwartz J, Koutrakis P | Epidemiology (Cambridge, Mass.) | 32282436 | Epidemiology | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32282436 |
| Joint and independent neurotoxic effects of early life exposures to a chemical mixture: A multi-pollutant approach combining ensemble learning and g-computation. | Oulhote Y, Coull B, Bind MA, Debes F, Nielsen F, Tamayo I, Weihe P, Grandjean P | Environmental epidemiology (Philadelphia, Pa.) | 32051926 | Environ Epidemiol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32051926 |
| A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota. | Sommer AJ, Peters A, Rommel M, Cyrys J, Grallert H, Haller D, Müller CL, Bind MC | PLoS computational biology | 35533202 | PLoS Comput Biol | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35533202 |
| Quantile causal mediation analysis allowing longitudinal data. | Bind MA, VanderWeele TJ, Schwartz JD, Coull BA | Statistics in medicine | 28786129 | Stat Med | 2017 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/28786129 |
| Counternull sets in randomized experiments. | Bind MC, Rubin DB | The American statistician | 40777734 | Am Stat | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40777734 |
| Editor's Highlight: Modifying Role of Endothelial Function Gene Variants on the Association of Long-Term PM2.5 Exposure With Blood DNA Methylation Age: The VA Normative Aging Study. | Nwanaji-Enwerem JC, Bind MA, Dai L, Oulhote Y, Colicino E, Di Q, Just AC, Hou L, Vokonas P, Coull BA, Weisskopf MG, Baccarelli AA, Schwartz JD | Toxicological sciences : an official journal of the Society of Toxicology | 28486674 | Toxicol Sci | 2017 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/28486674 |
| Bronchial cell epigenetic aging in a human experimental study of short-term diesel and ozone exposures. | Nwanaji-Enwerem JC, Bozack AK, Ward-Caviness C, Diaz-Sanchez D, Devlin RB, Bind MC, Cardenas A | Environmental epigenetics | 39416749 | Environ Epigenet | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39416749 |
| Comparing apples to apples: an environmental criminology analysis of the effects of heat and rain on violent crimes in Boston. | Sommer AJ, Lee M, Bind MC | Palgrave communications | 31360534 | Palgrave Commun | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/31360534 |
| Causal Modeling in Environmental Health. | Bind MA | Annual review of public health | 30633715 | Annu Rev Public Health | 2019 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/30633715 |
| Controlled human exposures to diesel exhaust: a human epigenome-wide experiment of target bronchial epithelial cells. | Cardenas A, Fadadu RP, Van Der Laan L, Ward-Caviness C, Granger L, Diaz-Sanchez D, Devlin RB, Bind MA | Environmental epigenetics | 33859829 | Environ Epigenet | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33859829 |
| Study of locomotion response and development in zebrafish (Danio rerio) embryos and larvae exposed to enniatin A, enniatin B, and beauvericin. | Juan-García A, Juan C, Bind MA, Engert F | The Science of the total environment | 33677298 | Sci Total Environ | 2021 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/33677298 |
| Assessing an Internet-Delivered, Emotion-Focused Intervention Compared With a Healthy Lifestyle Active Control Intervention in Improving Mental Health in Cancer Survivors: Protocol for a Randomized Controlled Trial. | Smith IS, Wallace R, Wellecke C, Bind MA, Weihs KL, Bei B, Wiley JF | JMIR research protocols | 35896021 | JMIR Res Protoc | 2022 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/35896021 |
| Targeting emotional regulation using an Internet-delivered psychological intervention for cancer survivors: A randomized controlled trial. | Smith IS, Bind MA, Weihs KL, Bei B, Wiley JF | British journal of health psychology | 37437963 | Br J Health Psychol | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37437963 |
| The importance of having a conceptual stage when reporting non-randomized studies. | Bind MC, Rubin DB | Biostatistics & epidemiology | 34368597 | Biostat Epidemiol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34368597 |
| Serum vaccine antibody concentrations in adults exposed to per- and polyfluoroalkyl substances: A birth cohort in the Faroe Islands. | Shih YH, Blomberg AJ, Bind MA, Holm D, Nielsen F, Heilmann C, Weihe P, Grandjean P | Journal of immunotoxicology | 34143710 | J Immunotoxicol | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34143710 |
| Larval zebrafish as an in vitro model for evaluating toxicological effects of mycotoxins. | Juan-García A, Bind MA, Engert F | Ecotoxicology and environmental safety | 32800244 | Ecotoxicol Environ Saf | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/32800244 |
| Estimating Causal Effects of Local Air Pollution on Daily Deaths: Effect of Low Levels. | Schwartz J, Bind MA, Koutrakis P | Environmental health perspectives | 27203595 | Environ Health Perspect | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27203595 |
| Ozone, NO(2) and PM(10) are associated with the occurrence of multiple sclerosis relapses. Evidence from seasonal multi-pollutant analyses. | Jeanjean M, Bind MA, Roux J, Ongagna JC, de Sèze J, Bard D, Leray E | Environmental research | 29426027 | Environ Res | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/29426027 |
| The impact of outdoor air pollution on COVID-19: a review of evidence from in vitro, animal, and human studies. | Bourdrel T, Annesi-Maesano I, Alahmad B, Maesano CN, Bind MA | European respiratory review : an official journal of the European Respiratory Society | 33568525 | Eur Respir Rev | 2021 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/33568525 |
| Myxoid glioneuronal tumor of the septum pellucidum and lateral ventricle is defined by a recurrent PDGFRA p.K385 mutation and DNT-like methylation profile. | Solomon DA, Korshunov A, Sill M, Jones DTW, Kool M, Pfister SM, Fan X, Bannykh S, Hu J, Danielpour M, Li R, Johnston J, Cham E, Cooney T, Sun PP, Oberheim Bush NA, McDermott M, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Villanueva-Meyer JE, Pekmezci M, Bollen AW, Perry A | Acta neuropathologica | 30006677 | Acta Neuropathol | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30006677 |
| The genetic landscape of anaplastic pleomorphic xanthoastrocytoma. | Phillips JJ, Gong H, Chen K, Joseph NM, van Ziffle J, Bastian BC, Grenert JP, Kline CN, Mueller S, Banerjee A, Nicolaides T, Gupta N, Berger MS, Lee HS, Pekmezci M, Tihan T, Bollen AW, Perry A, Shieh JTC, Solomon DA | Brain pathology (Zurich, Switzerland) | 30051528 | Brain Pathol | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30051528 |
| Familial melanoma-astrocytoma syndrome: synchronous diffuse astrocytoma and pleomorphic xanthoastrocytoma in a patient with germline CDKN2A/B deletion and a significant family history. | Chan AK, Han SJ, Choy W, Beleford D, Aghi MK, Berger MS, Shieh JT, Bollen AW, Perry A, Phillips JJ, Butowski N, Solomon DA | Clinical neuropathology | 28699883 | Clin Neuropathol | 2017 Sep/Oct | https://www.ncbi.nlm.nih.gov/pubmed/28699883 |
| Targeted next-generation sequencing of pediatric neuro-oncology patients improves diagnosis, identifies pathogenic germline mutations, and directs targeted therapy. | Kline CN, Joseph NM, Grenert JP, van Ziffle J, Talevich E, Onodera C, Aboian M, Cha S, Raleigh DR, Braunstein S, Torkildson J, Samuel D, Bloomer M, Campomanes AGA, Banerjee A, Butowski N, Raffel C, Tihan T, Bollen AW, Phillips JJ, Korn WM, Yeh I, Bastian BC, Gupta N, Mueller S, Perry A, Nicolaides T, Solomon DA | Neuro-oncology | 28453743 | Neuro Oncol | 2017 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/28453743 |
| A recurrent kinase domain mutation in PRKCA defines chordoid glioma of the third ventricle. | Goode B, Mondal G, Hyun M, Ruiz DG, Lin YH, Van Ziffle J, Joseph NM, Onodera C, Talevich E, Grenert JP, Hewedi IH, Snuderl M, Brat DJ, Kleinschmidt-DeMasters BK, Rodriguez FJ, Louis DN, Yong WH, Lopes MB, Rosenblum MK, Butowski N, Tihan T, Bollen AW, Phillips JJ, Wiita AP, Yeh I, Jacobson MP, Bastian BC, Perry A, Solomon DA | Nature communications | 29476136 | Nat Commun | 2018 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/29476136 |
| Diffuse midline gliomas with subclonal H3F3A K27M mutation and mosaic H3.3 K27M mutant protein expression. | Lopez GY, Oberheim Bush NA, Phillips JJ, Bouffard JP, Moshel YA, Jaeckle K, Kleinschmidt-DeMasters BK, Rosenblum MK, Perry A, Solomon DA | Acta neuropathologica | 29063183 | Acta Neuropathol | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29063183 |
| Myxoid glioneuronal tumor, PDGFRA p.K385-mutant: clinical, radiologic, and histopathologic features. | Lucas CG, Villanueva-Meyer JE, Whipple N, Oberheim Bush NA, Cooney T, Chang S, McDermott M, Berger M, Cham E, Sun PP, Putnam A, Zhou H, Bollo R, Cheshier S, Poppe MM, Fung KM, Sung S, Glenn C, Fan X, Bannykh S, Hu J, Danielpour M, Li R, Alva E, Johnston J, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Pekmezci M, Tihan T, Bollen AW, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31609499 | Brain Pathol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/31609499 |
| ALK-positive histiocytosis with KIF5B-ALK fusion in the central nervous system. | Lucas CG, Gilani A, Solomon DA, Liang X, Maher OM, Chamyan G, Kleinschmidt-Demasters BK, Perry A | Acta neuropathologica | 31119374 | Acta Neuropathol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31119374 |
| Clinicopathologic and molecular features of intracranial desmoplastic small round cell tumors. | Lee JC, Villanueva-Meyer JE, Ferris SP, Cham EM, Zucker J, Cooney T, Gilani A, Kleinschmidt-DeMasters BK, Trembath D, Mafra M, Chiang J, Ellison DW, Cho SJ, Horvai AE, Van Ziffle J, Onodera C, Devine P, Grenert JP, de Voijs CMA, van Blokland WTM, de Leng WWJ, Ploegmakers MJ, Flucke U, Pekmezci M, Bollen AW, Tihan T, Koelsche C, von Deimling A, Wesseling P, Solomon DA, Perry A | Brain pathology (Zurich, Switzerland) | 31837177 | Brain Pathol | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31837177 |
| Loss of ZNF750 in ocular and cutaneous sebaceous carcinoma. | North JP, Solomon DA, Golovato J, Bloomer M, Benz SC, Cho RJ | Journal of cutaneous pathology | 31148199 | J Cutan Pathol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31148199 |
| A requirement for STAG2 in replication fork progression creates a targetable synthetic lethality in cohesin-mutant cancers. | Mondal G, Stevers M, Goode B, Ashworth A, Solomon DA | Nature communications | 30975996 | Nat Commun | 2019 Apr 11 | https://www.ncbi.nlm.nih.gov/pubmed/30975996 |
| Gliomas arising in the setting of Li-Fraumeni syndrome stratify into two molecular subgroups with divergent clinicopathologic features. | Sloan EA, Hilz S, Gupta R, Cadwell C, Ramani B, Hofmann J, Kline CN, Banerjee A, Reddy A, Oberheim Bush NA, Chang S, Braunstein S, Chang EF, Raffel C, Gupta N, Sun PP, Kim JYH, Moes G, Alva E, Li R, Bruggers CS, Alashari M, Wetmore C, Garg S, Dishop M, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Phillips JJ, Pekmezci M, Tihan T, Bollen AW, Berger MS, Costello JF, Perry A, Solomon DA | Acta neuropathologica | 32157385 | Acta Neuropathol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32157385 |
| Inactivating MUTYH germline mutations in pediatric patients with high-grade midline gliomas. | Kline CN, Joseph NM, Grenert JP, van Ziffle J, Yeh I, Bastian BC, Mueller S, Solomon DA | Neuro-oncology | 26902849 | Neuro Oncol | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/26902849 |
| Genomic profiling of malignant peritoneal mesothelioma reveals recurrent alterations in epigenetic regulatory genes BAP1, SETD2, and DDX3X. | Joseph NM, Chen YY, Nasr A, Yeh I, Talevich E, Onodera C, Bastian BC, Rabban JT, Garg K, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 27813512 | Mod Pathol | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27813512 |
| A genetically distinct pediatric subtype of primary CNS large B-cell lymphoma is associated with favorable clinical outcome. | Güney E, Lucas CG, Qi Z, Yu J, Zhang R, Ohgami RS, Rubenstein JL, Boué DR, Schafernak K, Wertheim GB, Dahiya S, Giulino-Roth L, Attarbaschi A, Barth MJ, Kothari S, Abla O, Cohen AL, Mendez JS, Bollen A, Perry A, Tihan T, Pekmezci M, Solomon DA, Wen KW | Blood advances | 35157770 | Blood Adv | 2022 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/35157770 |
| The immunohistochemical, DNA methylation, and chromosomal copy number profile of cauda equina paraganglioma is distinct from extra-spinal paraganglioma. | Ramani B, Gupta R, Wu J, Barreto J, Bollen AW, Tihan T, Mummaneni PV, Ames C, Clark A, Oberheim Bush NA, Butowski N, Phillips D, King BE, Bator SM, Treynor EC, Zherebitskiy V, Quinn PS, Walker JB, Pekmezci M, Sullivan DV, Hofmann JW, Sloan EA, M Chang S, Berger MS, Solomon DA, Perry A | Acta neuropathologica | 32892244 | Acta Neuropathol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32892244 |
| Intratumor and informatic heterogeneity influence meningioma molecular classification. | Vasudevan HN, Choudhury A, Hilz S, Villanueva-Meyer JE, Chen WC, Lucas CG, Braunstein SE, Oberheim Bush NA, Butowski N, Pekmezci M, McDermott MW, Perry A, Solomon DA, Magill ST, Raleigh DR | Acta neuropathologica | 35759011 | Acta Neuropathol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35759011 |
| EWSR1-BEND2 fusion defines an epigenetically distinct subtype of astroblastoma. | Lucas CG, Gupta R, Wu J, Shah K, Ravindranathan A, Barreto J, Gener M, Ginn KF, Prall OWJ, Xu H, Kee D, Ko HS, Yaqoob N, Zia N, Florez A, Cha S, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 34825267 | Acta Neuropathol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34825267 |
| STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection. | Ding S, Diep J, Feng N, Ren L, Li B, Ooi YS, Wang X, Brulois KF, Yasukawa LL, Li X, Kuo CJ, Solomon DA, Carette JE, Greenberg HB | Nature communications | 29662124 | Nat Commun | 2018 Apr 16 | https://www.ncbi.nlm.nih.gov/pubmed/29662124 |
| Primary intracranial sarcomas with DICER1 mutation often contain prominent eosinophilic cytoplasmic globules and can occur in the setting of neurofibromatosis type 1. | Lee JC, Villanueva-Meyer JE, Ferris SP, Sloan EA, Hofmann JW, Hattab EM, Williams BJ, Guo H, Torkildson J, Florez A, Van Ziffle J, Onodera C, Grenert JP, Cho SJ, Horvai AE, Jones DTW, Pfister SM, Koelsche C, von Deimling A, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 30649606 | Acta Neuropathol | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30649606 |
| The genetic landscape of gliomas arising after therapeutic radiation. | López GY, Van Ziffle J, Onodera C, Grenert JP, Yeh I, Bastian BC, Clarke J, Oberheim Bush NA, Taylor J, Chang S, Butowski N, Banerjee A, Mueller S, Kline C, Torkildson J, Samuel D, Siongco A, Raffel C, Gupta N, Kunwar S, Mummaneni P, Aghi M, Theodosopoulos P, Berger M, Phillips JJ, Pekmezci M, Tihan T, Bollen AW, Perry A, Solomon DA | Acta neuropathologica | 30196423 | Acta Neuropathol | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30196423 |
| Diffusion Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3-K27M Mutation Using Apparent Diffusion Coefficient Histogram Analysis. | Aboian MS, Tong E, Solomon DA, Kline C, Gautam A, Vardapetyan A, Tamrazi B, Li Y, Jordan CD, Felton E, Weinberg B, Braunstein S, Mueller S, Cha S | AJNR. American journal of neuroradiology | 31694820 | AJNR Am J Neuroradiol | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31694820 |
| Conserved features of TERT promoter duplications reveal an activation mechanism that mimics hotspot mutations in cancer. | Barger CJ, Suwala AK, Soczek KM, Wang AS, Kim MY, Hong C, Doudna JA, Chang SM, Phillips JJ, Solomon DA, Costello JF | Nature communications | 36114166 | Nat Commun | 2022 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/36114166 |
| Low-grade glioneuronal tumors with FGFR2 fusion resolve into a single epigenetic group corresponding to 'Polymorphous low-grade neuroepithelial tumor of the young'. | Gupta R, Lucas CG, Wu J, Barreto J, Shah K, Simon IB, Casavilca-Zambrano S, Brathwaite C, Zhou H, Caccamo D, Gilani A, Kleinschmidt-DeMasters BK, Lee JC, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 34322742 | Acta Neuropathol | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34322742 |
| Tumor DNA requirements for accurate epigenetic-based classification of CNS neoplasia. | Wu J, Gupta R, Barreto J, Doo P, Joseph NM, Lee JC, Perry A, Chang SM, Berger MS, Solomon DA | Neuro-oncology | 34351421 | Neuro Oncol | 2021 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/34351421 |
| High-grade neuroepithelial tumor with BCOR exon 15 internal tandem duplication-a comprehensive clinical, radiographic, pathologic, and genomic analysis. | Ferris SP, Velazquez Vega J, Aboian M, Lee JC, Van Ziffle J, Onodera C, Grenert JP, Saunders T, Chen YY, Banerjee A, Kline CN, Gupta N, Raffel C, Samuel D, Ruiz-Diaz I, Magaki S, Wilson D, Neltner J, Al-Hajri Z, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Schniederjan M, Cha S, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 31104347 | Brain Pathol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31104347 |
| Recurrent non-canonical histone H3 mutations in spinal cord diffuse gliomas. | Sloan EA, Cooney T, Oberheim Bush NA, Buerki R, Taylor J, Clarke JL, Torkildson J, Kline C, Reddy A, Mueller S, Banerjee A, Butowski N, Chang S, Mummaneni PV, Chou D, Tan L, Theodosopoulos P, McDermott M, Berger M, Raffel C, Gupta N, Sun PP, Li Y, Shah V, Cha S, Braunstein S, Raleigh DR, Samuel D, Scharnhorst D, Fata C, Guo H, Moes G, Kim JYH, Koschmann C, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Pekmezci M, Phillips JJ, Tihan T, Bollen AW, Perry A, Solomon DA | Acta neuropathologica | 31515627 | Acta Neuropathol | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31515627 |
| Pediatric bithalamic gliomas have a distinct epigenetic signature and frequent EGFR exon 20 insertions resulting in potential sensitivity to targeted kinase inhibition. | Mondal G, Lee JC, Ravindranathan A, Villanueva-Meyer JE, Tran QT, Allen SJ, Barreto J, Gupta R, Doo P, Van Ziffle J, Onodera C, Devine P, Grenert JP, Samuel D, Li R, Metrock LK, Jin LW, Antony R, Alashari M, Cheshier S, Whipple NS, Bruggers C, Raffel C, Gupta N, Kline CN, Reddy A, Banerjee A, Hall MD, Mehta MP, Khatib Z, Maher OM, Brathwaite C, Pekmezci M, Phillips JJ, Bollen AW, Tihan T, Lucas JT Jr, Broniscer A, Berger MS, Perry A, Orr BA, Solomon DA | Acta neuropathologica | 32303840 | Acta Neuropathol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32303840 |
| Diffuse Midline Gliomas with Histone H3-K27M Mutation: A Series of 47 Cases Assessing the Spectrum of Morphologic Variation and Associated Genetic Alterations. | Solomon DA, Wood MD, Tihan T, Bollen AW, Gupta N, Phillips JJ, Perry A | Brain pathology (Zurich, Switzerland) | 26517431 | Brain Pathol | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/26517431 |
| Activating NTRK2 and ALK receptor tyrosine kinase fusions extend the molecular spectrum of pleomorphic xanthoastrocytomas of early childhood: a diagnostic overlap with infant-type hemispheric glioma. | Lucas CG, Abdullaev Z, Bruggers CS, Mirchia K, Whipple NS, Alashari MM, Lowichik A, Cheshier S, Phillips JJ, Devine P, Solomon DA, Quezado M, Aldape KD, Perry A | Acta neuropathologica | 34910220 | Acta Neuropathol | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34910220 |
| Intracranial mesenchymal tumor with FET-CREB fusion-A unifying diagnosis for the spectrum of intracranial myxoid mesenchymal tumors and angiomatoid fibrous histiocytoma-like neoplasms. | Sloan EA, Chiang J, Villanueva-Meyer JE, Alexandrescu S, Eschbacher JM, Wang W, Mafra M, Ud Din N, Carr-Boyd E, Watson M, Punsoni M, Oviedo A, Gilani A, Kleinschmidt-DeMasters BK, Coss DJ, Lopes MB, Raffel C, Berger MS, Chang SM, Reddy A, Ramani B, Ferris SP, Lee JC, Hofmann JW, Cho SJ, Horvai AE, Pekmezci M, Tihan T, Bollen AW, Rodriguez FJ, Ellison DW, Perry A, Solomon DA | Brain pathology (Zurich, Switzerland) | 33141488 | Brain Pathol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33141488 |
| Complete durable response of a pediatric anaplastic oligodendroglioma to temozolomide alone: Case report and review of literature. | Sorge C, Li R, Singh S, Reddy AT, Solomon DA, Perry A, Friedman GK | Pediatric blood & cancer | 28696020 | Pediatr Blood Cancer | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28696020 |
| Genomic analysis of the origins and evolution of multicentric diffuse lower-grade gliomas. | Hayes J, Yu Y, Jalbert LE, Mazor T, Jones LE, Wood MD, Walsh KM, Bengtsson H, Hong C, Oberndorfer S, Roetzer T, Smirnov IV, Clarke JL, Aghi MK, Chang SM, Nelson SJ, Woehrer A, Phillips JJ, Solomon DA, Costello JF | Neuro-oncology | 29077933 | Neuro Oncol | 2018 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/29077933 |
| Iris and Ciliary Body Melanocytomas Are Defined by Solitary GNAQ Mutation Without Additional Oncogenic Alterations. | Solomon DA, Ramani B, Eiger-Moscovich M, Milman T, Uludag G, Crawford JB, Phan I, Char DH, Shields CL, Eagle RC Jr, Bastian BC, Bloomer MM, Pekmezci M | Ophthalmology | 35835335 | Ophthalmology | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35835335 |
| The genetic landscape of ganglioglioma. | Pekmezci M, Villanueva-Meyer JE, Goode B, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Chamyan G, Maher OM, Khatib Z, Kleinschmidt-DeMasters BK, Samuel D, Mueller S, Banerjee A, Clarke JL, Cooney T, Torkildson J, Gupta N, Theodosopoulos P, Chang EF, Berger M, Bollen AW, Perry A, Tihan T, Solomon DA | Acta neuropathologica communications | 29880043 | Acta Neuropathol Commun | 2018 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/29880043 |
| Deep sequencing of WNT-activated medulloblastomas reveals secondary SHH pathway activation. | Iorgulescu JB, Van Ziffle J, Stevers M, Grenert JP, Bastian BC, Chavez L, Stichel D, Buchhalter I, Samuel D, Nicolaides T, Banerjee A, Mueller S, Gupta N, Tihan T, Bollen AW, Northcott PA, Kool M, Pfister S, Korshunov A, Perry A, Solomon DA | Acta neuropathologica | 29435664 | Acta Neuropathol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29435664 |
| Adenomatoid tumors of the male and female genital tract are defined by TRAF7 mutations that drive aberrant NF-kB pathway activation. | Goode B, Joseph NM, Stevers M, Van Ziffle J, Onodera C, Talevich E, Grenert JP, Yeh I, Bastian BC, Phillips JJ, Garg K, Rabban JT, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 29148537 | Mod Pathol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29148537 |
| Angiocentric glioma with MYB-QKI fusion located in the brainstem, rather than cerebral cortex. | Chan E, Bollen AW, Sirohi D, Van Ziffle J, Grenert JP, Kline CN, Tihan T, Perry A, Gupta N, Solomon DA | Acta neuropathologica | 28776091 | Acta Neuropathol | 2017 Oct | https://www.ncbi.nlm.nih.gov/pubmed/28776091 |
| Diffuse non-midline glioma with H3F3A K27M mutation: a prognostic and treatment dilemma. | López G, Oberheim Bush NA, Berger MS, Perry A, Solomon DA | Acta neuropathologica communications | 28506301 | Acta Neuropathol Commun | 2017 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/28506301 |
| Multimodal molecular analysis of astroblastoma enables reclassification of most cases into more specific molecular entities. | Wood MD, Tihan T, Perry A, Chacko G, Turner C, Pu C, Payne C, Yu A, Bannykh SI, Solomon DA | Brain pathology (Zurich, Switzerland) | 28960623 | Brain Pathol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28960623 |
| Genetic and epigenetic characterization of posterior pituitary tumors. | Schmid S, Solomon DA, Perez E, Thieme A, Kleinschmidt-DeMasters BK, Giannini C, Reinhardt A, Asa SL, Mete O, Stichel D, Siewert C, Dittmayer C, Hasselblatt M, Paulus W, Nagel C, Harter PN, Schittenhelm J, Honegger J, Rushing E, Coras R, Pfister SM, Buslei R, Koch A, Perry A, Jones DTW, von Deimling A, Capper D, Lopes MB | Acta neuropathologica | 34661724 | Acta Neuropathol | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34661724 |
| Histopathologic review of pineal parenchymal tumors identifies novel morphologic subtypes and prognostic factors for outcome. | Raleigh DR, Solomon DA, Lloyd SA, Lazar A, Garcia MA, Sneed PK, Clarke JL, McDermott MW, Berger MS, Tihan T, Haas-Kogan DA | Neuro-oncology | 27282397 | Neuro Oncol | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27282397 |
| Genetic confirmation that ependymoma can arise as part of multiple endocrine neoplasia type 1 (MEN1) syndrome. | Cuevas-Ocampo AK, Bollen AW, Goode B, Pajtler KW, Chavez L, Sharma T, Dai SC, McDermott M, Perry A, Korshunov A, Solomon DA | Acta neuropathologica | 28238068 | Acta Neuropathol | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28238068 |
| Next-Generation Sequencing of Retinoblastoma Identifies Pathogenic Alterations beyond RB1 Inactivation That Correlate with Aggressive Histopathologic Features. | Afshar AR, Pekmezci M, Bloomer MM, Cadenas NJ, Stevers M, Banerjee A, Roy R, Olshen AB, Van Ziffle J, Onodera C, Devine WP, Grenert JP, Bastian BC, Solomon DA, Damato BE | Ophthalmology | 32139107 | Ophthalmology | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32139107 |
| Well-differentiated papillary mesothelioma of the peritoneum is genetically defined by mutually exclusive mutations in TRAF7 and CDC42. | Stevers M, Rabban JT, Garg K, Van Ziffle J, Onodera C, Grenert JP, Yeh I, Bastian BC, Zaloudek C, Solomon DA | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 30171198 | Mod Pathol | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30171198 |
| Loss of H3K27 trimethylation by immunohistochemistry is frequent in oligodendroglioma, IDH-mutant and 1p/19q-codeleted, but is neither a sensitive nor a specific marker. | Pekmezci M, Phillips JJ, Dirilenoglu F, Atasever-Rezanko T, Tihan T, Solomon D, Bollen A, Perry A | Acta neuropathologica | 31912209 | Acta Neuropathol | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31912209 |
| Oligodendrogliomas, IDH-mutant and 1p/19q-codeleted, arising during teenage years often lack TERT promoter mutation that is typical of their adult counterparts. | Lee J, Putnam AR, Chesier SH, Banerjee A, Raffel C, Van Ziffle J, Onodera C, Grenert JP, Bastian BC, Perry A, Solomon DA | Acta neuropathologica communications | 30231927 | Acta Neuropathol Commun | 2018 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/30231927 |
| A review of recently described genetic alterations in central nervous system tumors. | Lucas CG, Solomon DA, Perry A | Human pathology | 31678207 | Hum Pathol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31678207 |
| Intracranial mesenchymal tumors with FET-CREB fusion are composed of at least two epigenetic subgroups distinct from meningioma and extracranial sarcomas. | Sloan EA, Gupta R, Koelsche C, Chiang J, Villanueva-Meyer JE, Alexandrescu S, Eschbacher JM, Wang W, Mafra M, Ud Din N, Carr-Boyd E, Watson M, Punsoni M, Oviedo A, Gilani A, Kleinschmidt-DeMasters BK, Coss DJ, Lopes MB, Reddy A, Mueller S, Cho SJ, Horvai AE, Lee JC, Pekmezci M, Tihan T, Bollen AW, Rodriguez FJ, Ellison DW, Perry A, von Deimling A, Chang SM, Berger MS, Solomon DA | Brain pathology (Zurich, Switzerland) | 34821426 | Brain Pathol | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34821426 |
| Comprehensive analysis of diverse low-grade neuroepithelial tumors with FGFR1 alterations reveals a distinct molecular signature of rosette-forming glioneuronal tumor. | Lucas CG, Gupta R, Doo P, Lee JC, Cadwell CR, Ramani B, Hofmann JW, Sloan EA, Kleinschmidt-DeMasters BK, Lee HS, Wood MD, Grafe M, Born D, Vogel H, Salamat S, Puccetti D, Scharnhorst D, Samuel D, Cooney T, Cham E, Jin LW, Khatib Z, Maher O, Chamyan G, Brathwaite C, Bannykh S, Mueller S, Kline CN, Banerjee A, Reddy A, Taylor JW, Clarke JL, Oberheim Bush NA, Butowski N, Gupta N, Auguste KI, Sun PP, Roland JL, Raffel C, Aghi MK, Theodosopoulos P, Chang E, Hervey-Jumper S, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Chang S, Berger MS, Perry A, Solomon DA | Acta neuropathologica communications | 32859279 | Acta Neuropathol Commun | 2020 Aug 28 | https://www.ncbi.nlm.nih.gov/pubmed/32859279 |
| Loss of p16 expression is a sensitive marker of CDKN2A homozygous deletion in malignant meningiomas. | Tang V, Lu R, Mirchia K, Van Ziffle J, Devine P, Lee J, Phillips JJ, Perry A, Raleigh DR, Lucas CG, Solomon DA | Acta neuropathologica | 36723772 | Acta Neuropathol | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36723772 |
| Molecular profiling identifies at least 3 distinct types of posttransplant lymphoproliferative disorder involving the CNS. | Guney E, Lucas CG, Singh K, Pekmezci M, Fernandez-Pol S, Mirchia K, Toland A, Vogel H, Bannykh S, Schafernak KT, Alexandrescu S, Mobley BC, Powell S, Davidson CJ, Neltner J, Boué DR, Hattab E, Ferris SP, Ohgami RS, Rubenstein JL, Bollen AW, Tihan T, Perry A, Solomon DA, Wen KW | Blood advances | 36897259 | Blood Adv | 2023 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/36897259 |
| Targeted Next-Generation Sequencing Reveals Divergent Clonal Evolution in Components of Composite Pleomorphic Xanthoastrocytoma-Ganglioglioma. | Lucas CG, Davidson CJ, Alashari M, Putnam AR, Whipple NS, Bruggers CS, Mendez JS, Cheshier SH, Walker JB, Ramani B, Cadwell CR, Sullivan DV, Lu R, Mirchia K, Van Ziffle J, Devine P, Goldschmidt E, Hervey-Jumper SL, Gupta N, Oberheim Bush NA, Raleigh DR, Bollen A, Tihan T, Pekmezci M, Solomon DA, Phillips JJ, Perry A | Journal of neuropathology and experimental neurology | 35703914 | J Neuropathol Exp Neurol | 2022 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/35703914 |
| Clinical, radiologic, and genetic characteristics of histone H3 K27M-mutant diffuse midline gliomas in adults. | Schulte JD, Buerki RA, Lapointe S, Molinaro AM, Zhang Y, Villanueva-Meyer JE, Perry A, Phillips JJ, Tihan T, Bollen AW, Pekmezci M, Butowski N, Oberheim Bush NA, Taylor JW, Chang SM, Theodosopoulos P, Aghi MK, Hervey-Jumper SL, Berger MS, Solomon DA, Clarke JL | Neuro-oncology advances | 33354667 | Neurooncol Adv | 2020 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/33354667 |
| Activating NRF1-BRAF and ATG7-RAF1 fusions in anaplastic pleomorphic xanthoastrocytoma without BRAF p.V600E mutation. | Phillips JJ, Gong H, Chen K, Joseph NM, van Ziffle J, Jin LW, Bastian BC, Bollen AW, Perry A, Nicolaides T, Solomon DA, Shieh JT | Acta neuropathologica | 27624885 | Acta Neuropathol | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27624885 |
| Exploiting molecular biology for diagnosis and targeted management of pediatric low-grade gliomas. | Garcia MA, Solomon DA, Haas-Kogan DA | Future oncology (London, England) | 27072750 | Future Oncol | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27072750 |
| IDH1 mutation can be present in diffuse astrocytomas and giant cell glioblastomas of young children under 10 years of age. | Ferris SP, Goode B, Joseph NM, Kline CN, Samuel D, Gupta N, Bollen A, Perry A, Mueller S, Solomon DA | Acta neuropathologica | 27161253 | Acta Neuropathol | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27161253 |
| Imaging Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3 K27M Mutation. | Aboian MS, Solomon DA, Felton E, Mabray MC, Villanueva-Meyer JE, Mueller S, Cha S | AJNR. American journal of neuroradiology | 28183840 | AJNR Am J Neuroradiol | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28183840 |
| The role of histone modifications and telomere alterations in the pathogenesis of diffuse gliomas in adults and children. | Lee J, Solomon DA, Tihan T | Journal of neuro-oncology | 28064387 | J Neurooncol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28064387 |
| Multinodular and vacuolating neuronal tumor of the cerebrum is a clonal neoplasm defined by genetic alterations that activate the MAP kinase signaling pathway. | Pekmezci M, Stevers M, Phillips JJ, Van Ziffle J, Bastian BC, Tsankova NM, Kleinschmidt-DeMasters BK, Rosenblum MK, Tihan T, Perry A, Solomon DA | Acta neuropathologica | 29428973 | Acta Neuropathol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29428973 |
| STAG2 Is a Biomarker for Prediction of Recurrence and Progression in Papillary Non-Muscle-Invasive Bladder Cancer. | Lelo A, Prip F, Harris BT, Solomon D, Berry DL, Chaldekas K, Kumar A, Simko J, Jensen JB, Bhattacharyya P, Mannion C, Kim JS, Philips G, Dyrskjøt L, Waldman T | Clinical cancer research : an official journal of the American Association for Cancer Research | 29954776 | Clin Cancer Res | 2018 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/29954776 |
| Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma. | North JP, Golovato J, Vaske CJ, Sanborn JZ, Nguyen A, Wu W, Goode B, Stevers M, McMullen K, Perez White BE, Collisson EA, Bloomer M, Solomon DA, Benz SC, Cho RJ | Nature communications | 29760388 | Nat Commun | 2018 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/29760388 |
| Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components. | Heskett MB, Sanborn JZ, Boniface C, Goode B, Chapman J, Garg K, Rabban JT, Zaloudek C, Benz SC, Spellman PT, Solomon DA, Cho RJ | Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc | 31911616 | Mod Pathol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31911616 |
| An update on the central nervous system manifestations of familial tumor predisposition syndromes. | Solomon DA | Acta neuropathologica | 32016553 | Acta Neuropathol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32016553 |
| Recurrent KBTBD4 small in-frame insertions and absence of DROSHA deletion or DICER1 mutation differentiate pineal parenchymal tumor of intermediate differentiation (PPTID) from pineoblastoma. | Lee JC, Mazor T, Lao R, Wan E, Diallo AB, Hill NS, Thangaraj N, Wendelsdorf K, Samuel D, Kline CN, Banerjee A, Auguste K, Raffel C, Gupta N, Berger M, Raleigh DR, Shai A, Phillips JJ, Bollen AW, Tihan T, Perry A, Costello J, Solomon DA | Acta neuropathologica | 30877433 | Acta Neuropathol | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30877433 |
| Multiplatform molecular analyses refine classification of gliomas arising in patients with neurofibromatosis type 1. | Lucas CG, Sloan EA, Gupta R, Wu J, Pratt D, Vasudevan HN, Ravindranathan A, Barreto J, Williams EA, Shai A, Whipple NS, Bruggers CS, Maher O, Nabors B, Rodriguez M, Samuel D, Brown M, Carmichael J, Lu R, Mirchia K, Sullivan DV, Pekmezci M, Tihan T, Bollen AW, Perry A, Banerjee A, Mueller S, Gupta N, Hervey-Jumper SL, Oberheim Bush NA, Daras M, Taylor JW, Butowski NA, de Groot J, Clarke JL, Raleigh DR, Costello JF, Phillips JJ, Reddy AT, Chang SM, Berger MS, Solomon DA | Acta neuropathologica | 35945463 | Acta Neuropathol | 2022 Oct | https://www.ncbi.nlm.nih.gov/pubmed/35945463 |
| Diffuse hemispheric glioma, H3 G34-mutant: Genomic landscape of a new tumor entity and prospects for targeted therapy. | Lucas CG, Mueller S, Reddy A, Taylor JW, Oberheim Bush NA, Clarke JL, Chang SM, Gupta N, Berger MS, Perry A, Phillips JJ, Solomon DA | Neuro-oncology | 34519829 | Neuro Oncol | 2021 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34519829 |
| Deconvoluting Mechanisms of Acquired Resistance to RAF Inhibitors in BRAF(V600E)-Mutant Human Glioma. | Schreck KC, Morin A, Zhao G, Allen AN, Flannery P, Glantz M, Green AL, Jones C, Jones KL, Kilburn LB, Nazemi KJ, Samuel D, Sanford B, Solomon DA, Wang J, Pratilas CA, Nicolaides T, Mulcahy Levy JM | Clinical cancer research : an official journal of the American Association for Cancer Research | 34433654 | Clin Cancer Res | 2021 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/34433654 |
| Addressing preferred specimen orientation in single-particle cryo-EM through tilting. | Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D | Nature methods | 28671674 | Nat Methods | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28671674 |
| Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. | Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N | Cell | 31348888 | Cell | 2019 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/31348888 |
| Challenges and opportunities in cryo-EM single-particle analysis. | Lyumkis D | The Journal of biological chemistry | 30804214 | J Biol Chem | 2019 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/30804214 |
| Structural Basis for the Activation of IKK1/α. | Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G | Cell reports | 27851956 | Cell Rep | 2016 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/27851956 |
| Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates. | Rabuck-Gibbons JN, Lyumkis D, Williamson JR | Structure (London, England : 1993) | 34990602 | Structure | 2022 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/34990602 |
| Evaluating Local and Directional Resolution of Cryo-EM Density Maps. | Aiyer S, Zhang C, Baldwin PR, Lyumkis D | Methods in molecular biology (Clifton, N.J.) | 33368004 | Methods Mol Biol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33368004 |
| Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease. | Polley S, Lyumkis D, Horton NC | Structure (London, England : 1993) | 31447289 | Structure | 2019 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/31447289 |
| Modular Assembly of the Bacterial Large Ribosomal Subunit. | Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR | Cell | 27912064 | Cell | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27912064 |
| Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d. | Zhang C, Konermann S, Brideau NJ, Lotfy P, Wu X, Novick SJ, Strutzenberg T, Griffin PR, Hsu PD, Lyumkis D | Cell | 30241607 | Cell | 2018 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/30241607 |
| Tools for visualizing and analyzing Fourier space sampling in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 32645314 | Prog Biophys Mol Biol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32645314 |
| Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd. | Brugger C, Zhang C, Suhanovsky MM, Kim DD, Sinclair AN, Lyumkis D, Deaconescu AM | Nature communications | 32719356 | Nat Commun | 2020 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/32719356 |
| Non-uniformity of projection distributions attenuates resolution in Cryo-EM. | Baldwin PR, Lyumkis D | Progress in biophysics and molecular biology | 31525386 | Prog Biophys Mol Biol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31525386 |
| Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification. | Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D | Ultramicroscopy | 30528101 | Ultramicroscopy | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30528101 |
| Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant. | Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D | Nature communications | 30194371 | Nat Commun | 2018 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/30194371 |
| SrmB Rescues Trapped Ribosome Assembly Intermediates. | Rabuck-Gibbons JN, Popova AM, Greene EM, Cervantes CF, Lyumkis D, Williamson JR | Journal of molecular biology | 31877323 | J Mol Biol | 2020 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/31877323 |
| Computational pipeline for estimation of small-molecule T1 relaxation times. | Wildenberg JC, Perkons NR, Pilla G, Kadlecek S, Gade TPF | Journal of magnetic resonance (San Diego, Calif. : 1997) | 32339979 | J Magn Reson | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32339979 |
| Radial Flow Perfusion Enables Real-Time Profiling of Cellular Metabolism at Low Oxygen Levels with Hyperpolarized (13)C NMR Spectroscopy. | Mancuso A, Pourfathi M, Kiefer RM, Noji MC, Siddiqui S, Profka E, Weber CN, Pantel A, Kadlecek SJ, Rizi R, Gade TPF | Metabolites | 34564392 | Metabolites | 2021 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/34564392 |
| Relative Initial Weight Is Associated with Improved Survival without Altering Tumor Latency in a Translational Rat Model of Diethylnitrosamine-Induced Hepatocellular Carcinoma and Transarterial Embolization. | Kiefer RM, Hunt SJ, Pulido S, Pickup S, Furth EE, Soulen MC, Nadolski GJ, Gade TP | Journal of vascular and interventional radiology : JVIR | 28495453 | J Vasc Interv Radiol | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28495453 |
| Establishment of hepatocellular carcinoma patient-derived xenografts from image-guided percutaneous biopsies. | Tischfield DJ, Ackerman D, Noji M, Chen JX, Johnson O, Perkons NR, Nadolski GJ, Hunt SJ, Soulen MC, Furth EE, Gade TP | Scientific reports | 31332214 | Sci Rep | 2019 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/31332214 |
| Functional Genetic Screening Enables Theranostic Molecular Imaging in Cancer. | Perkons NR, Johnson O, Pilla G, Profka E, Mercadante M, Ackerman D, Gade TPF | Clinical cancer research : an official journal of the American Association for Cancer Research | 32499234 | Clin Cancer Res | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32499234 |
| Tissue metabolic profiling shows that saccharopine accumulates during renal ischemic-reperfusion injury, while kynurenine and itaconate accumulate in renal allograft rejection. | Beier UH, Hartung EA, Concors S, Hernandez PT, Wang Z, Perry C, Baur JA, Denburg MR, Hancock WW, Gade TP, Levine MH | Metabolomics : Official journal of the Metabolomic Society | 32367163 | Metabolomics | 2020 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/32367163 |
| Hyperpolarized Metabolic Imaging Detects Latent Hepatocellular Carcinoma Domains Surviving Locoregional Therapy. | Perkons NR, Kiefer RM, Noji MC, Pourfathi M, Ackerman D, Siddiqui S, Tischfield D, Profka E, Johnson O, Pickup S, Mancuso A, Pantel A, Denburg MR, Nadolski GJ, Hunt SJ, Furth EE, Kadlecek S, Gade TPF | Hepatology (Baltimore, Md.) | 31553806 | Hepatology | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31553806 |
| Angiographic Atlas of the Visceral Vascular Anatomy in Translational Rat Models. | Shi D, Kiefer RM, Nishiofuku H, Cortes A, Nadolski GJ, Hunt SJ, Avritscher R, Gade TPF | Journal of vascular and interventional radiology : JVIR | 31202678 | J Vasc Interv Radiol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31202678 |
| Pharmacodynamics and pharmacokinetics of hyperpolarized [1-(13) C]-pyruvate in a translational oncologic model. | Perkons NR, Johnson O, Pilla G, Gade TPF | NMR in biomedicine | 33772910 | NMR Biomed | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33772910 |
| Off-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials. | Lin A, Giuliano CJ, Palladino A, John KM, Abramowicz C, Yuan ML, Sausville EL, Lukow DA, Liu L, Chait AR, Galluzzo ZC, Tucker C, Sheltzer JM | Science translational medicine | 31511426 | Sci Transl Med | 2019 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/31511426 |
| A CRISPR Competition Assay to Identify Cancer Genetic Dependencies. | Girish V, Sheltzer JM | Bio-protocol | 33659353 | Bio Protoc | 2020 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/33659353 |
| Combustible and Electronic Cigarette Exposures Increase ACE2 Activity and SARS-CoV-2 Spike Binding. | Ghosh A, Girish V, Yuan ML, Coakley RD, Wrennall JA, Alexis NE, Sausville EL, Vasudevan A, Chait AR, Sheltzer JM, Tarran R | American journal of respiratory and critical care medicine | 34748720 | Am J Respir Crit Care Med | 2022 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/34748720 |
| Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract. | Smith JC, Sausville EL, Girish V, Yuan ML, Vasudevan A, John KM, Sheltzer JM | Developmental cell | 32425701 | Dev Cell | 2020 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/32425701 |
| Genome-wide identification and analysis of prognostic features in human cancers. | Smith JC, Sheltzer JM | Cell reports | 35354049 | Cell Rep | 2022 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/35354049 |
| MELK expression correlates with tumor mitotic activity but is not required for cancer growth. | Giuliano CJ, Lin A, Smith JC, Palladino AC, Sheltzer JM | eLife | 29417930 | Elife | 2018 Feb 8 | https://www.ncbi.nlm.nih.gov/pubmed/29417930 |
| Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. | Vasudevan A, Baruah PS, Smith JC, Wang Z, Sayles NM, Andrews P, Kendall J, Leu J, Chunduri NK, Levy D, Wigler M, Storchová Z, Sheltzer JM | Developmental cell | 32097652 | Dev Cell | 2020 Feb 24 | https://www.ncbi.nlm.nih.gov/pubmed/32097652 |
| Generating Single Cell-Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. | Giuliano CJ, Lin A, Girish V, Sheltzer JM | Current protocols in molecular biology | 31503414 | Curr Protoc Mol Biol | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31503414 |
| Systematic identification of mutations and copy number alterations associated with cancer patient prognosis. | Smith JC, Sheltzer JM | eLife | 30526857 | Elife | 2018 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/30526857 |
| Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. | Hoffmann M, Hofmann-Winkler H, Smith JC, Krüger N, Sørensen LK, Søgaard OS, Hasselstrøm JB, Winkler M, Hempel T, Raich L, Olsson S, Yamazoe T, Yamatsuta K, Mizuno H, Ludwig S, Noé F, Sheltzer JM, Kjolby M, Pöhlmann S | bioRxiv : the preprint server for biology | 32793911 | bioRxiv | 2020 Aug 5 | https://www.ncbi.nlm.nih.gov/pubmed/32793911 |
| Chromosomal instability accelerates the evolution of resistance to anti-cancer therapies. | Lukow DA, Sausville EL, Suri P, Chunduri NK, Wieland A, Leu J, Smith JC, Girish V, Kumar AA, Kendall J, Wang Z, Storchova Z, Sheltzer JM | Developmental cell | 34352222 | Dev Cell | 2021 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/34352222 |
| Extensive protein dosage compensation in aneuploid human cancers. | Schukken KM, Sheltzer JM | Genome research | 35701073 | Genome Res | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35701073 |
| Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. | Hoffmann M, Hofmann-Winkler H, Smith JC, Krüger N, Arora P, Sørensen LK, Søgaard OS, Hasselstrøm JB, Winkler M, Hempel T, Raich L, Olsson S, Danov O, Jonigk D, Yamazoe T, Yamatsuta K, Mizuno H, Ludwig S, Noé F, Kjolby M, Braun A, Sheltzer JM, Pöhlmann S | EBioMedicine | 33676899 | EBioMedicine | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33676899 |
| CRISPR/Cas9 mutagenesis invalidates a putative cancer dependency targeted in on-going clinical trials. | Lin A, Giuliano CJ, Sayles NM, Sheltzer JM | eLife | 28337968 | Elife | 2017 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/28337968 |
| Discovering and validating cancer genetic dependencies: approaches and pitfalls. | Lin A, Sheltzer JM | Nature reviews. Genetics | 32561862 | Nat Rev Genet | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32561862 |
| Content analysis of targeted food and beverage advertisements in a Chinese-American neighbourhood. | Bragg MA, Pageot YK, Hernández-Villarreal O, Kaplan SA, Kwon SC | Public health nutrition | 28587693 | Public Health Nutr | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28587693 |
| Marketing Food and Beverages to Youth Through Sports. | Bragg MA, Roberto CA, Harris JL, Brownell KD, Elbel B | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 29111226 | J Adolesc Health | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29111226 |
| Sports Sponsorships of Food and Nonalcoholic Beverages. | Bragg MA, Miller AN, Roberto CA, Sam R, Sarda V, Harris JL, Brownell KD | Pediatrics | 29581181 | Pediatrics | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29581181 |
| Fast food, beverage, and snack brands on social media in the United States: An examination of marketing techniques utilized in 2000 brand posts. | Bragg MA, Pageot YK, Amico A, Miller AN, Gasbarre A, Rummo PE, Elbel B | Pediatric obesity | 31875654 | Pediatr Obes | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/31875654 |
| An online randomized trial of healthy default beverages and unhealthy beverage restrictions on children's menus. | Rummo PE, Moran AJ, Musicus AA, Roberto CA, Bragg MA | Preventive medicine reports | 33318891 | Prev Med Rep | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33318891 |
| COVID-19-Related Changes to Drug-Selling Networks and Their Effects on People Who Use Illicit Opioids. | Frank D, Krawczyk N, Arshonsky J, Bragg MA, Friedman SR, Bunting AM | Journal of studies on alcohol and drugs | 36971722 | J Stud Alcohol Drugs | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36971722 |
| COVID-Washing in US Food and Beverage Marketing on Twitter: Content Analysis. | Tsai KA, Cassidy O, Arshonsky J, Bond S, Del Giudice IM, Bragg MA | JMIR formative research | 36040957 | JMIR Form Res | 2022 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/36040957 |
| How Food Marketing on Instagram Shapes Adolescents' Food Preferences: Online Randomized Trial. | Bragg M, Lutfeali S, Greene T, Osterman J, Dalton M | Journal of medical Internet research | 34677136 | J Med Internet Res | 2021 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/34677136 |
| Comparing the Prevalence of Alcohol, Combustible and Electronic Cigarettes, Hookah, and Marijuana, in Music Videos across 6 Genres of Popular Music from 2014-2020. | Albert SL, Rogers E, Hall Z, Zuardo G, Bragg MA | Substance use & misuse | 35377260 | Subst Use Misuse | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35377260 |
| Brands with personalities - good for businesses, but bad for public health? A content analysis of how food and beverage brands personify themselves on Twitter. | Greene T, Seet C, Rodríguez Barrio A, McIntyre D, Kelly B, Bragg MA | Public health nutrition | 33820575 | Public Health Nutr | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33820575 |
| Examining the Relationship between Youth-Targeted Food Marketing Expenditures and the Demographics of Social Media Followers. | Rummo PE, Cassidy O, Wells I, Coffino JA, Bragg MA | International journal of environmental research and public health | 32138342 | Int J Environ Res Public Health | 2020 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/32138342 |
| Understanding the Extent of Adolescents' Willingness to Engage With Food and Beverage Companies' Instagram Accounts: Experimental Survey Study. | Lutfeali S, Ward T, Greene T, Arshonsky J, Seixas A, Dalton M, Bragg MA | JMIR public health and surveillance | 33107836 | JMIR Public Health Surveill | 2020 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/33107836 |
| Comparison of online marketing techniques on food and beverage companies' websites in six countries. | Bragg MA, Eby M, Arshonsky J, Bragg A, Ogedegbe G | Globalization and health | 29073900 | Global Health | 2017 Oct 26 | https://www.ncbi.nlm.nih.gov/pubmed/29073900 |
| A content analysis of outdoor non-alcoholic beverage advertisements in Ghana. | Bragg MA, Hardoby T, Pandit NG, Raji YR, Ogedegbe G | BMJ open | 28588104 | BMJ Open | 2017 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/28588104 |
| Food Industry Donations to Academic Programs: A Cross-Sectional Examination of the Extent of Publicly Available Data. | A Bragg M, Elbel B, Nestle M | International journal of environmental research and public health | 32138233 | Int J Environ Res Public Health | 2020 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/32138233 |
| Evaluating the influence of racially targeted food and beverage advertisements on Black and White adolescents' perceptions and preferences. | Bragg MA, Miller AN, Kalkstein DA, Elbel B, Roberto CA | Appetite | 31055011 | Appetite | 2019 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/31055011 |
| Child Social Media Influencers and Unhealthy Food Product Placement. | Alruwaily A, Mangold C, Greene T, Arshonsky J, Cassidy O, Pomeranz JL, Bragg M | Pediatrics | 33106342 | Pediatrics | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33106342 |
| Latinx and White Adolescents' Preferences for Latinx-Targeted Celebrity and Noncelebrity Food Advertisements: Experimental Survey Study. | Bragg MA, Lutfeali S, Gabler DG, Quintana Licona DA, Harris JL | Journal of medical Internet research | 39889276 | J Med Internet Res | 2025 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/39889276 |
| Waste generation and carbon emissions of a hospital kitchen in the US: Potential for waste diversion and carbon reductions. | Thiel CL, Park S, Musicus AA, Agins J, Gan J, Held J, Horrocks A, Bragg MA | PloS one | 33730046 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33730046 |
| Popular Music Celebrity Endorsements in Food and Nonalcoholic Beverage Marketing. | Bragg MA, Miller AN, Elizee J, Dighe S, Elbel BD | Pediatrics | 27273712 | Pediatrics | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27273712 |
| Social Media Accounts of Food and Beverage Brands Have Disproportionately More Black and Hispanic Followers than White Followers. | Rummo PE, Arshonsky JH, Sharkey AL, Cassidy OL, Bragg MA | Health equity | 34235366 | Health Equity | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34235366 |
| A Qualitative Analysis of Black and White Adolescents' Perceptions of and Responses to Racially Targeted Food and Drink Commercials on Television. | Miller A, Cassidy O, Greene T, Arshonsky J, Albert SL, Bragg MA | International journal of environmental research and public health | 34770078 | Int J Environ Res Public Health | 2021 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/34770078 |
| Comparing McDonald's food marketing practices on official Instagram accounts across 15 countries. | Cassidy O, Shin HW, Song E, Jiang E, Harri R, Cano C, Vedanthan R, Ogedegbe G, Bragg M | BMJ nutrition, prevention & health | 35028520 | BMJ Nutr Prev Health | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/35028520 |
| Neurocognitive Development of Motivated Behavior: Dynamic Changes across Childhood and Adolescence. | Gee DG, Bath KG, Johnson CM, Meyer HC, Murty VP, van den Bos W, Hartley CA | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30381435 | J Neurosci | 2018 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/30381435 |
| Novel insights from actigraphy: Anxiety is associated with sleep quantity but not quality during childhood. | Cohodes EM, Abusch A, Odriozola P, Gee DG | Clinical child psychology and psychiatry | 30696260 | Clin Child Psychol Psychiatry | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30696260 |
| Ventral hippocampus interacts with prelimbic cortex during inhibition of threat response via learned safety in both mice and humans. | Meyer HC, Odriozola P, Cohodes EM, Mandell JD, Li A, Yang R, Hall BS, Haberman JT, Zacharek SJ, Liston C, Lee FS, Gee DG | Proceedings of the National Academy of Sciences of the United States of America | 31822612 | Proc Natl Acad Sci U S A | 2019 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/31822612 |
| Emotion regulation as a transdiagnostic factor in the development of internalizing and externalizing psychopathology: Current and future directions. | Aldao A, Gee DG, De Los Reyes A, Seager I | Development and psychopathology | 27739387 | Dev Psychopathol | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27739387 |
| Experimental evidence for a child-to-adolescent switch in human amygdala-prefrontal cortex communication: A cross-sectional pilot study. | Gee DG, Hanson C, Caglar LR, Fareri DS, Gabard-Durnam LJ, Mills-Finnerty C, Goff B, Caldera CJ, Lumian DS, Flannery J, Hanson SJ, Tottenham N | Developmental science | 35080089 | Dev Sci | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35080089 |
| Decomposing complex links between the childhood environment and brain structure in school-aged youth. | Hong SJ, Sisk LM, Caballero C, Mekhanik A, Roy AK, Milham MP, Gee DG | Developmental cognitive neuroscience | 33556882 | Dev Cogn Neurosci | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33556882 |
| Parental Buffering of Stress in the Time of COVID-19: Family-Level Factors May Moderate the Association Between Pandemic-Related Stress and Youth Symptomatology. | Cohodes EM, McCauley S, Gee DG | Research on child and adolescent psychopathology | 33591457 | Res Child Adolesc Psychopathol | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33591457 |
| Developmental neuroplasticity and adversity-related risk for psychopathology. | Sisk LM, Gee DG | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 39095522 | Neuropsychopharmacology | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39095522 |
| Leveraging big data to map neurodevelopmental trajectories in pediatric anxiety. | Zacharek SJ, Kribakaran S, Kitt ER, Gee DG | Developmental cognitive neuroscience | 34147988 | Dev Cogn Neurosci | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34147988 |
| Associations between early-life stress exposure and internalizing symptomatology during the COVID-19 pandemic: Assessing the role of neurobehavioral mediators. | Foster JC, Cohodes EM, Brieant AE, McCauley S, Odriozola P, Zacharek SJ, Pierre JC, Hodges HR, Kribakaran S, Haberman JT, Holt-Gosselin B, Gee DG | Biological psychiatry global open science | 35959474 | Biol Psychiatry Glob Open Sci | 2022 Aug 6 | https://www.ncbi.nlm.nih.gov/pubmed/35959474 |
| When do sensitive periods emerge later in development? | Gee DG | Trends in cognitive sciences | 34933793 | Trends Cogn Sci | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34933793 |
| When Uncertainty Is a Certainty: Optimizing Exposure-Based Therapies. | Gee DG, Odriozola P | Biological psychiatry global open science | 36325300 | Biol Psychiatry Glob Open Sci | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36325300 |
| Developmental Differences in a Hippocampal-Cingulate Pathway Involved in Learned Safety Following Interpersonal Trauma Exposure. | Kribakaran S, DeCross SN, Odriozola P, McLaughlin KA, Gee DG | Journal of the American Academy of Child and Adolescent Psychiatry | 39368629 | J Am Acad Child Adolesc Psychiatry | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39368629 |
| Person-centered analyses reveal that developmental adversity at moderate levels and neural threat/safety discrimination are associated with lower anxiety in early adulthood. | Sisk LM, Keding TJ, Ruiz S, Odriozola P, Kribakaran S, Cohodes EM, McCauley S, Zacharek SJ, Hodges HR, Haberman JT, Pierre JC, Caballero C, Baskin-Sommers A, Gee DG | Communications psychology | 40044923 | Commun Psychol | 2025 Mar 5 | https://www.ncbi.nlm.nih.gov/pubmed/40044923 |
| Psychological and environmental correlates of locus of control and posttraumatic stress symptoms: A latent profile analysis. | Foster JC, Cohodes EM, Mandell JD, McCauley S, Hodges HR, Pierre JC, Kribakaran S, Haberman JT, Notti ME, Schroeder MM, Ababio R, Beloborodova A, Gee DG | Psychological trauma : theory, research, practice and policy | 40811138 | Psychol Trauma | 2025 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/40811138 |
| Caregiving Influences on Development: A Sensitive Period for Biological Embedding of Predictability and Safety Cues. | Gee DG, Cohodes EM | Current directions in psychological science | 34675455 | Curr Dir Psychol Sci | 2021 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/34675455 |
| Characterizing experiential elements of early-life stress to inform resilience: Buffering effects of controllability and predictability and the importance of their timing. | Cohodes EM, Sisk LM, Keding TJ, Mandell JD, Notti ME, Gee DG | Development and psychopathology | 37496155 | Dev Psychopathol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37496155 |
| Learning About Safety: Conditioned Inhibition as a Novel Approach to Fear Reduction Targeting the Developing Brain. | Odriozola P, Gee DG | The American journal of psychiatry | 33167673 | Am J Psychiatry | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/33167673 |
| Caregiving influences on emotional learning and regulation: Applying a sensitive period model. | Gee DG | Current opinion in behavioral sciences | 33718534 | Curr Opin Behav Sci | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33718534 |
| Training the Next Generation of Clinical Psychological Scientists: A Data-Driven Call to Action. | Gee DG, DeYoung KA, McLaughlin KA, Tillman RM, Barch DM, Forbes EE, Krueger RF, Strauman TJ, Weierich MR, Shackman AJ | Annual review of clinical psychology | 35216523 | Annu Rev Clin Psychol | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/35216523 |
| Leveraging the developmental neuroscience of caregiving to promote resilience among youth exposed to adversity. | Gee DG, Cohodes EM | Development and psychopathology | 37929292 | Dev Psychopathol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37929292 |
| Managing fear and anxiety in development: A framework for understanding the neurodevelopment of emotion regulation capacity and tendency. | Caballero C, Nook EC, Gee DG | Neuroscience and biobehavioral reviews | 36529313 | Neurosci Biobehav Rev | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36529313 |
| Development of the emotional brain. | Casey BJ, Heller AS, Gee DG, Cohen AO | Neuroscience letters | 29197573 | Neurosci Lett | 2019 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/29197573 |
| Predicting Mental Health in Adolescence: Frontoinsular Circuitry, Emotion in Daily Life, and Risk for Depression. | Gee DG, Caballero C | Biological psychiatry. Cognitive neuroscience and neuroimaging | 31395211 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31395211 |
| Responding to threat: Associations between neural reactivity to and behavioral avoidance of threat in pediatric anxiety. | Kitt ER, Zacharek SJ, Odriozola P, Nardini C, Hommel G, Martino A, Anderson T, Spencer H, Broussard A, Dean J, Marin CE, Silverman WK, Lebowitz ER, Gee DG | Journal of affective disorders | 38290579 | J Affect Disord | 2024 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/38290579 |
| Hippocampal Involvement in Safety Signal Learning Varies With Anxiety Among Healthy Adults. | Odriozola P, Kribakaran S, Cohodes EM, Zacharek SJ, McCauley S, Haberman JT, Quintela LA, Hernandez C, Spencer H, Pruessner L, Caballero C, Gee DG | Biological psychiatry global open science | 38298801 | Biol Psychiatry Glob Open Sci | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38298801 |
| Sensitive Periods of Emotion Regulation: Influences of Parental Care on Frontoamygdala Circuitry and Plasticity. | Gee DG | New directions for child and adolescent development | 27589500 | New Dir Child Adolesc Dev | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27589500 |
| The Role of the Endocannabinoid System and Genetic Variation in Adolescent Brain Development. | Meyer HC, Lee FS, Gee DG | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 28685756 | Neuropsychopharmacology | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28685756 |
| Development and validation of the Dimensional Inventory of Stress and Trauma Across the Lifespan (DISTAL): A novel assessment tool to facilitate the dimensional study of psychobiological sequelae of exposure to adversity. | Cohodes EM, McCauley S, Pierre JC, Hodges HR, Haberman JT, Santiuste I, Rogers MK, Wang J, Mandell JD, Gee DG | Developmental psychobiology | 37073593 | Dev Psychobiol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37073593 |
| Emotion and Emotion Preferences in Daily Life: The Role of Anxiety. | Vanderlind WM, Everaert J, Caballero C, Cohodes EM, Gee DG | Clinical psychological science : a journal of the Association for Psychological Science | 35174008 | Clin Psychol Sci | 2021 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/35174008 |
| Meta-analysis of Structural Magnetic Resonance Imaging Studies in Pediatric Posttraumatic Stress Disorder and Comparison With Related Conditions. | Kribakaran S, Danese A, Bromis K, Kempton MJ, Gee DG | Biological psychiatry. Cognitive neuroscience and neuroimaging | 31690501 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31690501 |
| Stress and adolescence: vulnerability and opportunity during a sensitive window of development. | Sisk LM, Gee DG | Current opinion in psychology | 34818623 | Curr Opin Psychol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34818623 |
| Associations among Household and Neighborhood Socioeconomic Disadvantages, Resting-state Frontoamygdala Connectivity, and Internalizing Symptoms in Youth. | Ip KI, Sisk LM, Horien C, Conley MI, Rapuano KM, Rosenberg MD, Greene AS, Scheinost D, Constable RT, Casey BJ, Baskin-Sommers A, Gee DG | Journal of cognitive neuroscience | 35104356 | J Cogn Neurosci | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/35104356 |
| Validation of an electronic self-administered version of the Dimensional Inventory of Stress and Trauma Across the Lifespan in a large sample of young adults. | Cohodes EM, Mandell JD, Notti ME, Schroeder MM, Ababio R, McCauley S, Pierre JC, Hodges HR, Gee DG | Psychological trauma : theory, research, practice and policy | 37956029 | Psychol Trauma | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/37956029 |
| Lack of robust associations between prepandemic coping strategies and frontolimbic circuitry with depression and anxiety symptoms during the COVID-19 pandemic: A preregistered longitudinal study. | Holt-Gosselin B, Cohodes EM, McCauley S, Foster JC, Odriozola P, Zacharek SJ, Kribakaran S, Haberman JT, Hodges HR, Gee DG | Behavioral neuroscience | 36395014 | Behav Neurosci | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36395014 |
| Parental Assistance with Emotion Regulation Moderates Link Between COVID-19 Stress and Child Mental Health. | Cohodes EM, McCauley S, Preece DA, Gross JJ, Gee DG | Journal of clinical child and adolescent psychology : the official journal for the Society of Clinical Child and Adolescent Psychology, American Psychological Association, Division 53 | 36399629 | J Clin Child Adolesc Psychol | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/36399629 |
| Parents' emotion suppression exacerbates the effect of COVID-19 stress on youth internalizing symptomatology. | Cohodes EM, McCauley S, Preece DA, Gross JJ, Gee DG | Emotion (Washington, D.C.) | 36355667 | Emotion | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36355667 |
| Migration-related trauma and mental health among migrant children emigrating from Mexico and Central America to the United States: Effects on developmental neurobiology and implications for policy. | Cohodes EM, Kribakaran S, Odriozola P, Bakirci S, McCauley S, Hodges HR, Sisk LM, Zacharek SJ, Gee DG | Developmental psychobiology | 34292596 | Dev Psychobiol | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34292596 |
| Atypical frontoamygdala functional connectivity in youth with autism. | Odriozola P, Dajani DR, Burrows CA, Gabard-Durnam LJ, Goodman E, Baez AC, Tottenham N, Uddin LQ, Gee DG | Developmental cognitive neuroscience | 30581125 | Dev Cogn Neurosci | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30581125 |
| Normative range parenting and the developing brain: A scoping review and recommendations for future research. | Farber MJ, Gee DG, Hariri AR | The European journal of neuroscience | 33051903 | Eur J Neurosci | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/33051903 |
| Comparing neural correlates of conditioned inhibition between children with and without anxiety disorders - A preliminary study. | Harrewijn A, Kitt ER, Abend R, Matsumoto C, Odriozola P, Winkler AM, Leibenluft E, Pine DS, Gee DG | Behavioural brain research | 33160010 | Behav Brain Res | 2021 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/33160010 |
| Individual differences in frontolimbic circuitry and anxiety emerge with adolescent changes in endocannabinoid signaling across species. | Gee DG, Fetcho RN, Jing D, Li A, Glatt CE, Drysdale AT, Cohen AO, Dellarco DV, Yang RR, Dale AM, Jernigan TL, Lee FS, Casey BJ, PING Consortium | Proceedings of the National Academy of Sciences of the United States of America | 27001846 | Proc Natl Acad Sci U S A | 2016 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/27001846 |
| Implications of the Research Domain Criteria project for childhood anxiety and its disorders. | Lebowitz ER, Gee DG, Pine DS, Silverman WK | Clinical psychology review | 29526524 | Clin Psychol Rev | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29526524 |
| Influences of early-life stress on frontolimbic circuitry: Harnessing a dimensional approach to elucidate the effects of heterogeneity in stress exposure. | Cohodes EM, Kitt ER, Baskin-Sommers A, Gee DG | Developmental psychobiology | 32227350 | Dev Psychobiol | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32227350 |
| Reforming clinical psychological science training: The importance of collaborative decision-making with trainees. | Gee DG, Shackman AJ | Clinical psychological science : a journal of the Association for Psychological Science | 38550306 | Clin Psychol Sci | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38550306 |
| Leveraging the science of stress to promote resilience and optimize mental health interventions during adolescence. | Gee DG, Sisk LM, Cohodes EM, Bryce NV | Nature communications | 36171218 | Nat Commun | 2022 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/36171218 |
| Family accommodation in pediatric anxiety: Relations with avoidance and self-efficacy. | Kitt ER, Lewis KM, Galbraith J, Abend R, Smith AR, Lebowitz ER, Pine DS, Gee DG | Behaviour research and therapy | 35613517 | Behav Res Ther | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35613517 |
| Associations among negative life events, changes in cortico-limbic connectivity, and psychopathology in the ABCD Study. | Brieant AE, Sisk LM, Gee DG | Developmental cognitive neuroscience | 34710799 | Dev Cogn Neurosci | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/34710799 |
| Genetic variation in endocannabinoid signaling is associated with differential network-level functional connectivity in youth. | Sisk LM, Rapuano KM, Conley MI, Greene AS, Horien C, Rosenberg MD, Scheinost D, Constable RT, Glatt CE, Casey BJ, Gee DG | Journal of neuroscience research | 34496065 | J Neurosci Res | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34496065 |
| Neurodevelopmental mechanisms linking early experiences and mental health: Translating science to promote well-being among youth. | Gee DG | The American psychologist | 36595400 | Am Psychol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36595400 |
| Multivariate Links Between the Developmental Timing of Adversity Exposure and White Matter Tract Connectivity in Adulthood. | Sisk LM, Keding TJ, Cohodes EM, McCauley S, Pierre JC, Odriozola P, Kribakaran S, Haberman JT, Zacharek SJ, Hodges HR, Caballero C, Gold G, Huang AY, Talton A, Gee DG | Biological psychiatry. Cognitive neuroscience and neuroimaging | 39978462 | Biol Psychiatry Cogn Neurosci Neuroimaging | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39978462 |
| Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity. | Tycko J, Myer VE, Hsu PD | Molecular cell | 27494557 | Mol Cell | 2016 Aug 4 | https://www.ncbi.nlm.nih.gov/pubmed/27494557 |
| Genome-wide bidirectional CRISPR screens identify mucins as host factors modulating SARS-CoV-2 infection. | Biering SB, Sarnik SA, Wang E, Zengel JR, Leist SR, Schäfer A, Sathyan V, Hawkins P, Okuda K, Tau C, Jangid AR, Duffy CV, Wei J, Gilmore RC, Alfajaro MM, Strine MS, Wrynla XH, Van Dis E, Catamura C, Yamashiro LH, Belk JA, Begeman A, Stark JC, Shon DJ, Fox DM, Ezzatpour S, Huang E, Olegario N, Rustagi A, Volmer AS, Livraghi-Butrico A, Wehri E, Behringer RR, Cheon DJ, Schaletzky J, Aguilar HC, Puschnik AS, Button B, Pinsky BA, Blish CA, Baric RS, O'Neal WK, Bertozzi CR, Wilen CB, Boucher RC, Carette JE, Stanley SA, Harris E, Konermann S, Hsu PD | Nature genetics | 35879412 | Nat Genet | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35879412 |
| Rapid, point-of-care molecular diagnostics with Cas13. | Agrawal S, Fanton A, Chandrasekaran SS, Charrez B, Escajeda AM, Son S, Mcintosh R, Bhuiya A, de León Derby MD, Switz NA, Armstrong M, Harris AR, Prywes N, Lukarska M, Biering SB, Smock DCJ, Mok A, Knott GJ, Dang Q, Van Dis E, Dugan E, Kim S, Liu TY, IGI Testing Consortium, Harris E, Stanley SA, Lareau LF, Tan MX, Fletcher DA, Doudna JA, Savage DF, Hsu PD | medRxiv : the preprint server for health sciences | 33354689 | medRxiv | 2021 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/33354689 |
| Accelerated RNA detection using tandem CRISPR nucleases. | Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, de León Derby MD, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, Fozouni P, Shu J, Stephens SI, Kumar GR, Zhao C, Mok A, Iavarone AT, Escajeda AM, McIntosh R, Kim SE, Dugan EJ, IGI Testing Consortium, Pollard KS, Tan MX, Ott M, Fletcher DA, Lareau LF, Hsu PD, Savage DF, Doudna JA | medRxiv : the preprint server for health sciences | 33791736 | medRxiv | 2021 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/33791736 |
| Rapid detection of SARS-CoV-2 RNA in saliva via Cas13. | Chandrasekaran SS, Agrawal S, Fanton A, Jangid AR, Charrez B, Escajeda AM, Son S, Mcintosh R, Tran H, Bhuiya A, de León Derby MD, Switz NA, Armstrong M, Harris AR, Prywes N, Lukarska M, Biering SB, Smock DCJ, Mok A, Knott GJ, Dang Q, Van Dis E, Dugan E, Kim S, Liu TY, IGI Testing Consortium, Moehle EA, Kogut K, Eskenazi B, Harris E, Stanley SA, Lareau LF, Tan MX, Fletcher DA, Doudna JA, Savage DF, Hsu PD | Nature biomedical engineering | 35953650 | Nat Biomed Eng | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35953650 |
| Deep learning and CRISPR-Cas13d ortholog discovery for optimized RNA targeting. | Wei J, Lotfy P, Faizi K, Baungaard S, Gibson E, Wang E, Slabodkin H, Kinnaman E, Chandrasekaran S, Kitano H, Durrant MG, Duffy CV, Pawluk A, Hsu PD, Konermann S | Cell systems | 38091991 | Cell Syst | 2023 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/38091991 |
| Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome. | Durrant MG, Fanton A, Tycko J, Hinks M, Chandrasekaran SS, Perry NT, Schaepe J, Du PP, Lotfy P, Bassik MC, Bintu L, Bhatt AS, Hsu PD | Nature biotechnology | 36217031 | Nat Biotechnol | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36217031 |
| Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors. | Konermann S, Lotfy P, Brideau NJ, Oki J, Shokhirev MN, Hsu PD | Cell | 29551272 | Cell | 2018 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/29551272 |
| Accelerated RNA detection using tandem CRISPR nucleases. | Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, Díaz de León Derby M, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, Fozouni P, Shu J, Stephens SI, Kumar GR, Zhao C, Mok A, Iavarone AT, Escajeda AM, McIntosh R, Kim S, Dugan EJ, IGI Testing Consortium, Pollard KS, Tan MX, Ott M, Fletcher DA, Lareau LF, Hsu PD, Savage DF, Doudna JA | Nature chemical biology | 34354262 | Nat Chem Biol | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34354262 |
| Cutaneous Dermatophilosis in a Meadow Jumping Mouse (Zapus hudsonius). | Caron TJ, Artim SC, Israelsen WJ, Holcombe HR, Fox JG, Bakthavatchalu V | Comparative medicine | 29460718 | Comp Med | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29460718 |
| Cancer-associated mutations in human pyruvate kinase M2 impair enzyme activity. | Liu VM, Howell AJ, Hosios AM, Li Z, Israelsen WJ, Vander Heiden MG | FEBS letters | 31642061 | FEBS Lett | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31642061 |
| Nesting box imager: Contact-free, real-time measurement of activity, surface body temperature, and respiratory rate applied to hibernating mouse models. | Kallmyer NE, Shin HJ, Brem EA, Israelsen WJ, Reuel NF | PLoS biology | 31339883 | PLoS Biol | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31339883 |
| Breeding and hibernation of captive meadow jumping mice (Zapus hudsonius). | Brem EA, McNulty AD, Israelsen WJ | PloS one | 33970917 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33970917 |
| Fibroblasts as an experimental model system for the study of comparative physiology. | Madelaire CB, Klink AC, Israelsen WJ, Hindle AG | Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology | 35321853 | Comp Biochem Physiol B Biochem Mol Biol | 2022 Jun-Jul | https://www.ncbi.nlm.nih.gov/pubmed/35321853 |
| Courtship behavior of the meadow jumping mouse (Zapus hudsonius). | Brem EA, Israelsen WJ | Western North American naturalist | 34290569 | West N Am Nat | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34290569 |
| Assessing the Safety of Craniotomy for Resection of Primary Central Nervous System Lymphoma: A Nationwide Inpatient Sample Analysis. | Yun J, Yang J, Cloney M, Mehta A, Singh S, Iwamoto FM, Neugut AI, Sonabend AM | Frontiers in neurology | 28955300 | Front Neurol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28955300 |
| Primary Central Nervous System Lymphoma: A Critical Review of the Role of Surgery for Resection. | Yun J, Iwamoto FM, Sonabend AM | Archives in cancer research | 28239600 | Arch Cancer Res | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28239600 |
| Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. | Zhao J, Chen AX, Gartrell RD, Silverman AM, Aparicio L, Chu T, Bordbar D, Shan D, Samanamud J, Mahajan A, Filip I, Orenbuch R, Goetz M, Yamaguchi JT, Cloney M, Horbinski C, Lukas RV, Raizer J, Rae AI, Yuan J, Canoll P, Bruce JN, Saenger YM, Sims P, Iwamoto FM, Sonabend AM, Rabadan R | Nature medicine | 30742119 | Nat Med | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30742119 |
| Author Correction: Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. | Zhao J, Chen AX, Gartrell RD, Silverman AM, Aparicio L, Chu T, Bordbar D, Shan D, Samanamud J, Mahajan A, Filip I, Orenbuch R, Goetz M, Yamaguchi JT, Cloney M, Horbinski C, Lukas RV, Raizer J, Rae AI, Yuan J, Canoll P, Bruce JN, Saenger YM, Sims P, Iwamoto FM, Sonabend AM, Rabadan R | Nature medicine | 30996326 | Nat Med | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30996326 |
| Emerging immunotherapies for malignant glioma: from immunogenomics to cell therapy. | Dunn GP, Cloughesy TF, Maus MV, Prins RM, Reardon DA, Sonabend AM | Neuro-oncology | 32615600 | Neuro Oncol | 2020 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/32615600 |
| The safety of resection for primary central nervous system lymphoma: a single institution retrospective analysis. | Cloney MB, Sonabend AM, Yun J, Yang J, Iwamoto F, Singh S, Bhagat G, Canoll P, Zanazzi G, Bruce JN, Sisti M, Sheth S, Connolly ES, McKhann G | Journal of neuro-oncology | 28116650 | J Neurooncol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28116650 |
| The possibility of cancer immune editing in gliomas. A critical review. | Arrieta VA, Cacho-Díaz B, Zhao J, Rabadan R, Chen L, Sonabend AM | Oncoimmunology | 29900059 | Oncoimmunology | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29900059 |
| Ultrasound-mediated Delivery of Paclitaxel for Glioma: A Comparative Study of Distribution, Toxicity, and Efficacy of Albumin-bound Versus Cremophor Formulations. | Zhang DY, Dmello C, Chen L, Arrieta VA, Gonzalez-Buendia E, Kane JR, Magnusson LP, Baran A, James CD, Horbinski C, Carpentier A, Desseaux C, Canney M, Muzzio M, Stupp R, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 31831565 | Clin Cancer Res | 2020 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/31831565 |
| Targeting CHEK2-YBX1&YBX3 regulatory hub to potentiate immune checkpoint blockade response in gliomas. | Ali H, Zhou N, Chen L, van Hijfte L, Karri V, Zhou Y, Habashy K, Arrieta VA, Kim KS, Duffy J, Yeeravalli R, Tiek DM, Song X, Mishra S, Lee-Chang C, Ahmed AU, Heiland DH, Sonabend AM, Dmello C | bioRxiv : the preprint server for biology | 40161682 | bioRxiv | 2025 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/40161682 |
| Convection-Enhanced Delivery. | Mehta AM, Sonabend AM, Bruce JN | Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics | 28299724 | Neurotherapeutics | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28299724 |
| Defining Glioblastoma Resectability Through the Wisdom of the Crowd: A Proof-of-Principle Study. | Sonabend AM, Zacharia BE, Cloney MB, Sonabend A, Showers C, Ebiana V, Nazarian M, Swanson KR, Baldock A, Brem H, Bruce JN, Butler W, Cahill DP, Carter B, Orringer DA, Roberts DW, Sagher O, Sanai N, Schwartz TH, Silbergeld DL, Sisti MB, Thompson RC, Waziri AE, Ghogawala Z, McKhann G 2nd | Neurosurgery | 27509070 | Neurosurgery | 2017 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/27509070 |
| Topoisomerase II Poisons for Glioblastoma; Existing Challenges and Opportunities to Personalize Therapy. | Mehta A, Awah CU, Sonabend AM | Frontiers in neurology | 29988316 | Front Neurol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29988316 |
| Overcoming the Blood-Brain Barrier with an Implantable Ultrasound Device. | Sonabend AM, Stupp R | Clinical cancer research : an official journal of the American Association for Cancer Research | 31076548 | Clin Cancer Res | 2019 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/31076548 |
| Can patient selection and neoadjuvant administration resuscitate PD-1 inhibitors for glioblastoma? | Arrieta VA, Iwamoto F, Lukas RV, Sachdev S, Rabadan R, Sonabend AM | Journal of neurosurgery | 31812138 | J Neurosurg | 2020 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/31812138 |
| CD8(+) T-cell-Mediated Immunoediting Influences Genomic Evolution and Immune Evasion in Murine Gliomas. | Kane JR, Zhao J, Tsujiuchi T, Laffleur B, Arrieta VA, Mahajan A, Rao G, Mela A, Dmello C, Chen L, Zhang DY, González-Buendia E, Lee-Chang C, Xiao T, Rothschild G, Basu U, Horbinski C, Lesniak MS, Heimberger AB, Rabadan R, Canoll P, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 32430477 | Clin Cancer Res | 2020 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/32430477 |
| Glioma immunoediting, a driver of tumor evolution, and the next battle for immunotherapy. | Sonabend AM, Stupp R, Lee-Chang C, Okada H | Oncotarget | 33456708 | Oncotarget | 2021 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/33456708 |
| ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma. | Arrieta VA, Chen AX, Kane JR, Kang SJ, Kassab C, Dmello C, Zhao J, Burdett KB, Upadhyayula PS, Lee-Chang C, Shilati J, Jaishankar D, Chen L, Gould A, Zhang D, Yuan J, Zhao W, Ling X, Burks JK, Laffleur B, Amidei C, Bruce JN, Lukas RV, Yamaguchi JT, Cieremans D, Rothschild G, Basu U, McCord M, Brat DJ, Zhang H, Cooper LAD, Zhang B, Sims P, Cloughesy TF, Prins R, Canoll P, Stupp R, Heimberger AB, Horbinski C, Iwamoto FM, Rabadan R, Sonabend AM | Nature cancer | 35121903 | Nat Cancer | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35121903 |
| Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade. | Dmello C, Zhao J, Chen L, Gould A, Castro B, Arrieta VA, Zhang DY, Kim KS, Kanojia D, Zhang P, Miska J, Yeeravalli R, Habashy K, Saganty R, Kang SJ, Fares J, Liu C, Dunn G, Bartom E, Schipma MJ, Hsu PD, Alghamri MS, Lesniak MS, Heimberger AB, Rabadan R, Lee-Chang C, Sonabend AM | Nature communications | 36949040 | Nat Commun | 2023 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/36949040 |
| Translocon-associated Protein Subunit SSR3 Determines and Predicts Susceptibility to Paclitaxel in Breast Cancer and Glioblastoma. | Dmello C, Sonabend A, Arrieta VA, Zhang DY, Kanojia D, Chen L, Gould A, Zhang J, Kang SJ, Winter J, Horbinski C, Amidei C, Győrffy B, Cordero A, Chang CL, Castro B, Hsu P, Ahmed AU, Lesniak MS, Stupp R, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 35552677 | Clin Cancer Res | 2022 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/35552677 |
| Beyond DNA damage response: Immunomodulatory attributes of CHEK2 in solid tumors. | Qian H, Ali H, Karri V, Low JT, Ashley DM, Heimberger AB, Godley LA, Sonabend AM, Dmello C | Oncotarget | 40492861 | Oncotarget | 2025 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/40492861 |
| Craniotomy and Survival for Primary Central Nervous System Lymphoma. | Rae AI, Mehta A, Cloney M, Kinslow CJ, Wang TJC, Bhagat G, Canoll PD, Zanazzi GJ, Sisti MB, Sheth SA, Connolly ES, McKhann GM, Bruce JN, Iwamoto FM, Sonabend AM | Neurosurgery | 29660011 | Neurosurgery | 2019 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/29660011 |
| Defining Glioblastoma Resectability Through the Wisdom of the Crowd: A Proof-of-Principle Study. | Neurosurgery | 29669127 | Neurosurgery | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29669127 | |
| Ribosomal protein S11 influences glioma response to TOP2 poisons. | Awah CU, Chen L, Bansal M, Mahajan A, Winter J, Lad M, Warnke L, Gonzalez-Buendia E, Park C, Zhang D, Feldstein E, Yu D, Zannikou M, Balyasnikova IV, Martuscello R, Konerman S, Győrffy B, Burdett KB, Scholtens DM, Stupp R, Ahmed A, Hsu P, Sonabend AM | Oncogene | 32528131 | Oncogene | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32528131 |
| Cancer Immunoediting in Gliomas: Recent Advances and Implications for Immunotherapy. | Shah PV, Arrieta VA, Lee-Chang C, Sonabend AM | Journal of cellular immunology | 35592772 | J Cell Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/35592772 |
| TOP2B Enzymatic Activity on Promoters and Introns Modulates Multiple Oncogenes in Human Gliomas. | Gonzalez-Buendia E, Zhao J, Wang L, Mukherjee S, Zhang D, Arrieta VA, Feldstein E, Kane JR, Kang SJ, Lee-Chang C, Mahajan A, Chen L, Realubit R, Karan C, Magnuson L, Horbinski C, Marshall SA, Sarkaria JN, Mohyeldin A, Nakano I, Bansal M, James CD, Brat DJ, Ahmed A, Canoll P, Rabadan R, Shilatifard A, Sonabend AM | Clinical cancer research : an official journal of the American Association for Cancer Research | 34433651 | Clin Cancer Res | 2021 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/34433651 |
| Drosophila P75 safeguards oogenesis by preventing H3K9me2 spreading. | Dou K, Liu Y, Zhang Y, Wang C, Huang Y, Zhang ZZ | Journal of genetics and genomics = Yi chuan xue bao | 32499180 | J Genet Genomics | 2020 Apr 20 | https://www.ncbi.nlm.nih.gov/pubmed/32499180 |
| Retrotransposon activation during Drosophila metamorphosis conditions adult antiviral responses. | Wang L, Tracy L, Su W, Yang F, Feng Y, Silverman N, Zhang ZZZ | Nature genetics | 36396707 | Nat Genet | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36396707 |
| Retrotransposons hijack alt-EJ for DNA replication and eccDNA biogenesis. | Yang F, Su W, Chung OW, Tracy L, Wang L, Ramsden DA, Zhang ZZZ | Nature | 37438532 | Nature | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37438532 |
| Hijacking Oogenesis Enables Massive Propagation of LINE and Retroviral Transposons. | Wang L, Dou K, Moon S, Tan FJ, Zhang ZZ | Cell | 30057117 | Cell | 2018 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/30057117 |
| A Robust Transposon-Endogenizing Response from Germline Stem Cells. | Moon S, Cassani M, Lin YA, Wang L, Dou K, Zhang ZZ | Developmental cell | 30393075 | Dev Cell | 2018 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/30393075 |
| Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification. | Yu B, Lin YA, Parhad SS, Jin Z, Ma J, Theurkauf WE, Zhang ZZ, Huang Y | EMBO reports | 29858487 | EMBO Rep | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29858487 |
| Skin cancer precursor immunotherapy for squamous cell carcinoma prevention. | Rosenberg AR, Tabacchi M, Ngo KH, Wallendorf M, Rosman IS, Cornelius LA, Demehri S | JCI insight | 30895944 | JCI Insight | 2019 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/30895944 |
| TSLP/dendritic cell axis promotes CD4+ T cell tolerance to the gut microbiome. | Messerschmidt JL, Azin M, Dempsey KE, Demehri S | JCI insight | 37427591 | JCI Insight | 2023 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/37427591 |
| CD8(+) T cell immunity blocks the metastasis of carcinogen-exposed breast cancer. | Li K, Li T, Feng Z, Huang M, Wei L, Yan Z, Long M, Hu Q, Wang J, Liu S, Sgroi DC, Demehri S | Science advances | 34144976 | Sci Adv | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34144976 |
| CD4+ T helper 2 cell-macrophage crosstalk induces IL-24-mediated breast cancer suppression. | Wang B, Xia Y, Zhou C, Zeng Y, Son HG, Demehri S | JCI insight | 39782693 | JCI Insight | 2025 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/39782693 |
| CD4+ T helper 2 cells suppress breast cancer by inducing terminal differentiation. | Boieri M, Malishkevich A, Guennoun R, Marchese E, Kroon S, Trerice KE, Awad M, Park JH, Iyer S, Kreuzer J, Haas W, Rivera MN, Demehri S | The Journal of experimental medicine | 35657353 | J Exp Med | 2022 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/35657353 |
| Topical Combination of Fluorouracil and Calcipotriene as a Palliative Therapy for Refractory Extramammary Paget Disease. | Molina GE, Khalifian S, Mull JL, Chen L, Rosman IS, Faulkner-Jones BE, Ngo KH, Demehri S, Cornelius LA, Wu PA | JAMA dermatology | 30785593 | JAMA Dermatol | 2019 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/30785593 |
| Fractional Laser Releases Tumor-Associated Antigens in Poorly Immunogenic Tumor and Induces Systemic Immunity. | Kawakubo M, Cunningham TJ, Demehri S, Manstein D | Scientific reports | 28986576 | Sci Rep | 2017 Oct 6 | https://www.ncbi.nlm.nih.gov/pubmed/28986576 |
| Natural killer cells suppress cancer metastasis by eliminating circulating cancer cells. | Vyas M, Requesens M, Nguyen TH, Peigney D, Azin M, Demehri S | Frontiers in immunology | 36733396 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36733396 |
| Rejection of benign melanocytic nevi by nevus-resident CD4(+) T cells. | Schiferle EB, Cheon SY, Ham S, Son HG, Messerschmidt JL, Lawrence DP, Cohen JV, Flaherty KT, Moon JJ, Lian CG, Sullivan RJ, Demehri S | Science advances | 34162549 | Sci Adv | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34162549 |
| Reduction in Human Epidermal Langerhans Cells with Age Is Associated with Decline in CXCL14-Mediated Recruitment of CD14(+) Monocytes. | Hasegawa T, Feng Z, Yan Z, Ngo KH, Hosoi J, Demehri S | The Journal of investigative dermatology | 31881212 | J Invest Dermatol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31881212 |
| Fractional laser exposure induces neutrophil infiltration (N1 phenotype) into the tumor and stimulates systemic anti-tumor immune response. | Kawakubo M, Demehri S, Manstein D | PloS one | 28922374 | PLoS One | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28922374 |
| Carcinogen exposure enhances cancer immunogenicity by blocking the development of an immunosuppressive tumor microenvironment. | Huang M, Xia Y, Li K, Shao F, Feng Z, Li T, Azin M, Demehri S | The Journal of clinical investigation | 37843274 | J Clin Invest | 2023 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/37843274 |
| Divergent Roles of Epithelium-Derived Alarmins in Notch Signaling-Deficient Skin. | Messerschmidt JL, Dempsey KE, Dillon KS, Demehri S | The Journal of investigative dermatology | 32147504 | J Invest Dermatol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32147504 |
| Chronic Inflammation Promotes Skin Carcinogenesis in Cancer-Prone Discoid Lupus Erythematosus. | Zaalberg A, Moradi Tuchayi S, Ameri AH, Ngo KH, Cunningham TJ, Eliane JP, Livneh M, Horn TD, Rosman IS, Musiek A, Anadkat MJ, Demehri S | The Journal of investigative dermatology | 30030152 | J Invest Dermatol | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30030152 |
| Thymic stromal lymphopoietin-stimulated CD4(+) T cells induce senescence in advanced breast cancer. | Boieri M, Marchese E, Pham QM, Azin M, Steidl LE, Malishkevich A, Demehri S | Frontiers in cell and developmental biology | 36467403 | Front Cell Dev Biol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36467403 |
| Immunity to commensal papillomaviruses protects against skin cancer. | Strickley JD, Messerschmidt JL, Awad ME, Li T, Hasegawa T, Ha DT, Nabeta HW, Bevins PA, Ngo KH, Asgari MM, Nazarian RM, Neel VA, Jenson AB, Joh J, Demehri S | Nature | 31666702 | Nature | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31666702 |
| Randomized trial of calcipotriol combined with 5-fluorouracil for skin cancer precursor immunotherapy. | Cunningham TJ, Tabacchi M, Eliane JP, Tuchayi SM, Manivasagam S, Mirzaalian H, Turkoz A, Kopan R, Schaffer A, Saavedra AP, Wallendorf M, Cornelius LA, Demehri S | The Journal of clinical investigation | 27869649 | J Clin Invest | 2017 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/27869649 |
| Thymic stromal lymphopoietin blocks early stages of breast carcinogenesis. | Demehri S, Cunningham TJ, Manivasagam S, Ngo KH, Moradi Tuchayi S, Reddy R, Meyers MA, DeNardo DG, Yokoyama WM | The Journal of clinical investigation | 26927668 | J Clin Invest | 2016 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/26927668 |
| IL-33/regulatory T cell axis triggers the development of a tumor-promoting immune environment in chronic inflammation. | Ameri AH, Moradi Tuchayi S, Zaalberg A, Park JH, Ngo KH, Li T, Lopez E, Colonna M, Lee RT, Mino-Kenudson M, Demehri S | Proceedings of the National Academy of Sciences of the United States of America | 30696763 | Proc Natl Acad Sci U S A | 2019 Feb 12 | https://www.ncbi.nlm.nih.gov/pubmed/30696763 |
| Meeting Report: Translational Advances in Cancer Prevention Agent Development Meeting. | Miller MS, Allen PJ, Brown PH, Chan AT, Clapper ML, Dashwood RH, Demehri S, Disis ML, DuBois RN, Glynn RJ, Kensler TW, Khan SA, Johnson BD, Liby KT, Lipkin SM, Mallery SR, Meuillet EJ, Roden RBS, Schoen RE, Sharp ZD, Shirwan H, Siegfried JM, Rao CV, You M, Vilar E, Szabo E, Mohammed A | Journal of cancer prevention | 33842408 | J Cancer Prev | 2021 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/33842408 |
| Extracellular matrix proteins regulate NK cell function in peripheral tissues. | Bunting MD, Vyas M, Requesens M, Langenbucher A, Schiferle EB, Manguso RT, Lawrence MS, Demehri S | Science advances | 35294229 | Sci Adv | 2022 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/35294229 |
| Moral attitudes and willingness to enhance and repair cognition with brain stimulation. | Medaglia JD, Yaden DB, Helion C, Haslam M | Brain stimulation | 30309762 | Brain Stimul | 2019 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/30309762 |
| Brain state expression and transitions are related to complex executive cognition in normative neurodevelopment. | Medaglia JD, Satterthwaite TD, Kelkar A, Ciric R, Moore TM, Ruparel K, Gur RC, Gur RE, Bassett DS | NeuroImage | 29126965 | Neuroimage | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29126965 |
| Brain network efficiency is influenced by the pathologic source of corticobasal syndrome. | Medaglia JD, Huang W, Segarra S, Olm C, Gee J, Grossman M, Ribeiro A, McMillan CT, Bassett DS | Neurology | 28779011 | Neurology | 2017 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/28779011 |
| TMS-induced phase resets depend on TMS intensity and EEG phase. | Erickson B, Kim B, Sabes P, Rich R, Hatcher A, Fernandez-Nuñez G, Mentzelopoulos G, Vitale F, Medaglia J | Journal of neural engineering | 39321851 | J Neural Eng | 2024 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/39321851 |
| Simulated Attack Reveals How Lesions Affect Network Properties in Poststroke Aphasia. | Medaglia JD, Erickson BA, Pustina D, Kelkar AS, DeMarco AT, Dickens JV, Turkeltaub PE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 35545436 | J Neurosci | 2022 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/35545436 |
| Network Controllability in the Inferior Frontal Gyrus Relates to Controlled Language Variability and Susceptibility to TMS. | Medaglia JD, Harvey DY, White N, Kelkar A, Zimmerman J, Bassett DS, Hamilton RH | The Journal of neuroscience : the official journal of the Society for Neuroscience | 29884739 | J Neurosci | 2018 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/29884739 |
| Investigating the influence of an effort-reward interaction on cognitive fatigue in individuals with multiple sclerosis. | Erani F, Patel D, Deck BL, Hamilton RH, Schultheis MT, Medaglia JD | Journal of neuropsychology | 36208463 | J Neuropsychol | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36208463 |
| Language Tasks and the Network Control Role of the Left Inferior Frontal Gyrus. | Medaglia JD, Harvey DY, Kelkar AS, Zimmerman JP, Mass JA, Bassett DS, Hamilton RH | eNeuro | 34244340 | eNeuro | 2021 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/34244340 |
| Brain and cognitive reserve: Translation via network control theory. | Medaglia JD, Pasqualetti F, Hamilton RH, Thompson-Schill SL, Bassett DS | Neuroscience and biobehavioral reviews | 28104411 | Neurosci Biobehav Rev | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28104411 |
| What the replication crisis means for intervention science. | Hillary FG, Medaglia JD | International journal of psychophysiology : official journal of the International Organization of Psychophysiology | 31082406 | Int J Psychophysiol | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31082406 |
| Graph Theoretic Analysis of Resting State Functional MR Imaging. | Medaglia JD | Neuroimaging clinics of North America | 28985931 | Neuroimaging Clin N Am | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28985931 |
| Optimally controlling the human connectome: the role of network topology. | Betzel RF, Gu S, Medaglia JD, Pasqualetti F, Bassett DS | Scientific reports | 27468904 | Sci Rep | 2016 Jul 29 | https://www.ncbi.nlm.nih.gov/pubmed/27468904 |
| Data-driven brain network models differentiate variability across language tasks. | Bansal K, Medaglia JD, Bassett DS, Vettel JM, Muldoon SF | PLoS computational biology | 30332401 | PLoS Comput Biol | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30332401 |
| Personalizing neuromodulation. | Medaglia JD, Erickson B, Zimmerman J, Kelkar A | International journal of psychophysiology : official journal of the International Organization of Psychophysiology | 30685229 | Int J Psychophysiol | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30685229 |
| Money versus performance feedback: money associated with lower feelings of cognitive fatigue. | Erani F, Stoll H, Patel D, Schultheis MT, Medaglia JD | Journal of clinical and experimental neuropsychology | 39611366 | J Clin Exp Neuropsychol | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39611366 |
| Functional Alignment with Anatomical Networks is Associated with Cognitive Flexibility. | Medaglia JD, Huang W, Karuza EA, Kelkar A, Thompson-Schill SL, Ribeiro A, Bassett DS | Nature human behaviour | 30498789 | Nat Hum Behav | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30498789 |
| Functional Neuroimaging in Traumatic Brain Injury: From Nodes to Networks. | Medaglia JD | Frontiers in neurology | 28883806 | Front Neurol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28883806 |
| Driving the brain towards creativity and intelligence: A network control theory analysis. | Kenett YN, Medaglia JD, Beaty RE, Chen Q, Betzel RF, Thompson-Schill SL, Qiu J | Neuropsychologia | 29307585 | Neuropsychologia | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29307585 |
| Clarifying cognitive control and the controllable connectome. | Medaglia JD | Wiley interdisciplinary reviews. Cognitive science | 29971940 | Wiley Interdiscip Rev Cogn Sci | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29971940 |
| A computational network control theory analysis of depression symptoms. | Kenett YN, Beaty RE, Medaglia JD | Personality neuroscience | 30706049 | Personal Neurosci | 2018 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/30706049 |
| Implementing a concept network model. | Solomon SH, Medaglia JD, Thompson-Schill SL | Behavior research methods | 30891712 | Behav Res Methods | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30891712 |
| Combining transcranial magnetic stimulation with functional magnetic resonance imaging for probing and modulating neural circuits relevant to affective disorders. | Oathes DJ, Balderston NL, Kording KP, DeLuisi JA, Perez GM, Medaglia JD, Fan Y, Duprat RJ, Satterthwaite TD, Sheline YI, Linn KA | Wiley interdisciplinary reviews. Cognitive science | 33470055 | Wiley Interdiscip Rev Cogn Sci | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33470055 |
| Context-Dependent Risk & Benefit Sensitivity Mediate Judgments About Cognitive Enhancement. | Fernandez K, Hamilton R, Cabrera L, Medaglia JD | AJOB neuroscience | 34931943 | AJOB Neurosci | 2022 Jan-Mar | https://www.ncbi.nlm.nih.gov/pubmed/34931943 |
| MXene-infused bioelectronic interfaces for multiscale electrophysiology and stimulation. | Driscoll N, Erickson B, Murphy BB, Richardson AG, Robbins G, Apollo NV, Mentzelopoulos G, Mathis T, Hantanasirisakul K, Bagga P, Gullbrand SE, Sergison M, Reddy R, Wolf JA, Chen HI, Lucas TH, Dillingham TR, Davis KA, Gogotsi Y, Medaglia JD, Vitale F | Science translational medicine | 34550728 | Sci Transl Med | 2021 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/34550728 |
| Enhancing cognitive control with transcranial magnetic stimulation in subject-specific frontoparietal networks. | Dengler J, Deck BL, Stoll H, Fernandez-Nunez G, Kelkar AS, Rich RR, Erickson BA, Erani F, Faseyitan O, Hamilton RH, Medaglia JD | Cortex; a journal devoted to the study of the nervous system and behavior | 38330778 | Cortex | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38330778 |
| Discovery of a periosteal stem cell mediating intramembranous bone formation. | Debnath S, Yallowitz AR, McCormick J, Lalani S, Zhang T, Xu R, Li N, Liu Y, Yang YS, Eiseman M, Shim JH, Hameed M, Healey JH, Bostrom MP, Landau DA, Greenblatt MB | Nature | 30250253 | Nature | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30250253 |
| Bone protection by inhibition of microRNA-182. | Inoue K, Deng Z, Chen Y, Giannopoulou E, Xu R, Gong S, Greenblatt MB, Mangala LS, Lopez-Berestein G, Kirsch DG, Sood AK, Zhao L, Zhao B | Nature communications | 30291236 | Nat Commun | 2018 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/30291236 |
| Impact of a prospective review program for reference laboratory testing requests. | Greenblatt MB, Nowak JA, Quade CC, Tanasijevic M, Lindeman N, Jarolim P | American journal of clinical pathology | 25873495 | Am J Clin Pathol | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25873495 |
| The ERK MAPK Pathway Is Essential for Skeletal Development and Homeostasis. | Kim JM, Yang YS, Park KH, Oh H, Greenblatt MB, Shim JH | International journal of molecular sciences | 31013682 | Int J Mol Sci | 2019 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/31013682 |
| Vascular endothelial growth factor pathway promotes osseointegration and CD31(hi)EMCN(hi) endothelium expansion in a mouse tibial implant model: an animal study. | Ji G, Xu R, Niu Y, Li N, Ivashkiv L, Bostrom MPG, Greenblatt MB, Yang X | The bone & joint journal | 31256654 | Bone Joint J | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31256654 |
| Osteoclasts are not a source of SLIT3. | Li N, Inoue K, Sun J, Niu Y, Lalani S, Yallowitz A, Yang X, Zhang C, Shen R, Zhao B, Xu R, Greenblatt MB | Bone research | 32133214 | Bone Res | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32133214 |
| Regulation of sclerostin by the SIRT1 stabilization pathway in osteocytes. | Kim JM, Yang YS, Xie J, Lee O, Kim J, Hong J, Boldyreff B, Filhol O, Chun H, Greenblatt MB, Gao G, Shim JH | Cell death and differentiation | 35169297 | Cell Death Differ | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35169297 |
| A vertebral skeletal stem cell lineage driving metastasis. | Sun J, Hu L, Bok S, Yallowitz AR, Cung M, McCormick J, Zheng LJ, Debnath S, Niu Y, Tan AY, Lalani S, Morse KW, Shinn D, Pajak A, Hammad M, Suhardi VJ, Li Z, Li N, Wang L, Zou W, Mittal V, Bostrom MPG, Xu R, Iyer S, Greenblatt MB | Nature | 37704733 | Nature | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37704733 |
| The performance of artificial intelligence chatbot large language models to address skeletal biology and bone health queries. | Cung M, Sosa B, Yang HS, McDonald MM, Matthews BG, Vlug AG, Imel EA, Wein MN, Stein EM, Greenblatt MB | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 38477743 | J Bone Miner Res | 2024 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/38477743 |
| Targeting skeletal endothelium to ameliorate bone loss. | Xu R, Yallowitz A, Qin A, Wu Z, Shin DY, Kim JM, Debnath S, Ji G, Bostrom MP, Yang X, Zhang C, Dong H, Kermani P, Lalani S, Li N, Liu Y, Poulos MG, Wach A, Zhang Y, Inoue K, Di Lorenzo A, Zhao B, Butler JM, Shim JH, Glimcher LH, Greenblatt MB | Nature medicine | 29785024 | Nat Med | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29785024 |
| RNA-seq Analysis of Peri-Implant Tissue Shows Differences in Immune, Notch, Wnt, and Angiogenesis Pathways in Aged Versus Young Mice. | Turajane K, Ji G, Chinenov Y, Chao M, Ayturk U, Suhardi VJ, Greenblatt MB, Ivashkiv LB, Bostrom MP, Yang X | JBMR plus | 34761143 | JBMR Plus | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34761143 |
| Discovery of a Vertebral Skeletal Stem Cell Driving Spinal Metastases. | Sun J, Hu L, Bok S, Yallowitz AR, Cung M, McCormick J, Zheng LJ, Debnath S, Niu Y, Tan AY, Lalani S, Morse KW, Shinn D, Pajak A, Li Z, Li N, Xu R, Iyer S, Greenblatt MB | Research square | 36747772 | Res Sq | 2023 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/36747772 |
| Alendronate enhances osseointegration in a murine implant model. | Vertesich K, Sosa BR, Niu Y, Ji G, Suhardi V, Turajane K, Mun S, Xu R, Windhager R, Park-Min KH, Greenblatt MB, Bostrom MP, Yang X | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 32915488 | J Orthop Res | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32915488 |
| TAOK3 is a MAP3K contributing to osteoblast differentiation and skeletal mineralization. | Li Z, Oh H, Cung M, Marquez SJ, Sun J, Hammad H, Janssens S, Pouliot P, Lambrecht BN, Yang YS, Shim JH, Greenblatt MB | Biochemical and biophysical research communications | 32807497 | Biochem Biophys Res Commun | 2020 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/32807497 |
| A multi-stem cell basis for craniosynostosis and calvarial mineralization. | Bok S, Yallowitz AR, Sun J, McCormick J, Cung M, Hu L, Lalani S, Li Z, Sosa BR, Baumgartner T, Byrne P, Zhang T, Morse KW, Mohamed FF, Ge C, Franceschi RT, Cowling RT, Greenberg BH, Pisapia DJ, Imahiyerobo TA, Lakhani S, Ross ME, Hoffman CE, Debnath S, Greenblatt MB | Nature | 37730988 | Nature | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37730988 |
| Systemic Adeno-Associated Virus-Mediated Gene Therapy Prevents the Multiorgan Disorders Associated with Aldehyde Dehydrogenase 2 Deficiency and Chronic Ethanol Ingestion. | Matsumura Y, Li N, Alwaseem H, Pagovich OE, Crystal RG, Greenblatt MB, Stiles KM | Human gene therapy | 31801381 | Hum Gene Ther | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31801381 |
| Endothelial-specific inhibition of NF-κB enhances functional haematopoiesis. | Poulos MG, Ramalingam P, Gutkin MC, Kleppe M, Ginsberg M, Crowley MJP, Elemento O, Levine RL, Rafii S, Kitajewski J, Greenblatt MB, Shim JH, Butler JM | Nature communications | 28000664 | Nat Commun | 2016 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/28000664 |
| MEKK2 mediates an alternative β-catenin pathway that promotes bone formation. | Greenblatt MB, Shin DY, Oh H, Lee KY, Zhai B, Gygi SP, Lotinun S, Baron R, Liu D, Su B, Glimcher LH, Shim JH | Proceedings of the National Academy of Sciences of the United States of America | 26884171 | Proc Natl Acad Sci U S A | 2016 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/26884171 |
| c-Jun N-Terminal Kinases (JNKs) Are Critical Mediators of Osteoblast Activity In Vivo. | Xu R, Zhang C, Shin DY, Kim JM, Lalani S, Li N, Yang YS, Liu Y, Eiseman M, Davis RJ, Shim JH, Greenblatt MB | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 28561373 | J Bone Miner Res | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28561373 |
| SMURF2 regulates bone homeostasis by disrupting SMAD3 interaction with vitamin D receptor in osteoblasts. | Xu Z, Greenblatt MB, Yan G, Feng H, Sun J, Lotinun S, Brady N, Baron R, Glimcher LH, Zou W | Nature communications | 28216630 | Nat Commun | 2017 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/28216630 |
| Adult stem cells and regenerative medicine-a symposium report. | Cable J, Fuchs E, Weissman I, Jasper H, Glass D, Rando TA, Blau H, Debnath S, Oliva A, Park S, Passegué E, Kim C, Krasnow MA | Annals of the New York Academy of Sciences | 31655007 | Ann N Y Acad Sci | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31655007 |
| A RUNX2 stabilization pathway mediates physiologic and pathologic bone formation. | Kim JM, Yang YS, Park KH, Ge X, Xu R, Li N, Song M, Chun H, Bok S, Charles JF, Filhol-Cochet O, Boldyreff B, Dinter T, Yu PB, Kon N, Gu W, Takarada T, Greenblatt MB, Shim JH | Nature communications | 32385263 | Nat Commun | 2020 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/32385263 |
| MEKK2 mediates aberrant ERK activation in neurofibromatosis type I. | Bok S, Shin DY, Yallowitz AR, Eiseman M, Cung M, Xu R, Li N, Sun J, Williams AL, Scott JE, Su B, Shim JH, Greenblatt MB | Nature communications | 33177525 | Nat Commun | 2020 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/33177525 |
| SLITRK5 is a negative regulator of hedgehog signaling in osteoblasts. | Sun J, Shin DY, Eiseman M, Yallowitz AR, Li N, Lalani S, Li Z, Cung M, Bok S, Debnath S, Marquez SJ, White TE, Khan AG, Lorenz IC, Shim JH, Lee FS, Xu R, Greenblatt MB | Nature communications | 34326333 | Nat Commun | 2021 Jul 29 | https://www.ncbi.nlm.nih.gov/pubmed/34326333 |
| Osteoblast-Osteoclast Communication and Bone Homeostasis. | Kim JM, Lin C, Stavre Z, Greenblatt MB, Shim JH | Cells | 32927921 | Cells | 2020 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/32927921 |
| Bone Turnover Markers in the Diagnosis and Monitoring of Metabolic Bone Disease. | Greenblatt MB, Tsai JN, Wein MN | Clinical chemistry | 27940448 | Clin Chem | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27940448 |
| The Unmixing Problem: A Guide to Applying Single-Cell RNA Sequencing to Bone. | Greenblatt MB, Ono N, Ayturk UM, Debnath S, Lalani S | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 31336008 | J Bone Miner Res | 2019 Jul | https://www.ncbi.nlm.nih.gov/pubmed/31336008 |
| Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis. | Deng Z, Ng C, Inoue K, Chen Z, Xia Y, Hu X, Greenblatt M, Pernis A, Zhao B | eLife | 33373293 | Elife | 2020 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/33373293 |
| Multidimensional Tracking of GPCR Signaling via Peroxidase-Catalyzed Proximity Labeling. | Paek J, Kalocsay M, Staus DP, Wingler L, Pascolutti R, Paulo JA, Gygi SP, Kruse AC | Cell | 28388415 | Cell | 2017 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/28388415 |
| Molecular mechanism of biased signaling in a prototypical G protein-coupled receptor. | Suomivuori CM, Latorraca NR, Wingler LM, Eismann S, King MC, Kleinhenz ALW, Skiba MA, Staus DP, Kruse AC, Lefkowitz RJ, Dror RO | Science (New York, N.Y.) | 32079767 | Science | 2020 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/32079767 |
| Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket. | Zimmerman B, Kelly B, McMillan BJ, Seegar TCM, Dror RO, Kruse AC, Blacklow SC | Cell | 27881302 | Cell | 2016 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/27881302 |
| Rapid generation of potent antibodies by autonomous hypermutation in yeast. | Wellner A, McMahon C, Gilman MSA, Clements JR, Clark S, Nguyen KM, Ho MH, Hu VJ, Shin JE, Feldman J, Hauser BM, Caradonna TM, Wingler LM, Schmidt AG, Marks DS, Abraham J, Kruse AC, Liu CC | Nature chemical biology | 34168368 | Nat Chem Biol | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/34168368 |
| Antibodies expand the scope of angiotensin receptor pharmacology. | Skiba MA, Sterling SM, Rawson S, Zhang S, Xu H, Jiang H, Nemeth GR, Gilman MSA, Hurley JD, Shen P, Staus DP, Kim J, McMahon C, Lehtinen MK, Rockman HA, Barth P, Wingler LM, Kruse AC | Nature chemical biology | 38744986 | Nat Chem Biol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38744986 |
| Identification of the gene that codes for the σ(2) receptor. | Alon A, Schmidt HR, Wood MD, Sahn JJ, Martin SF, Kruse AC | Proceedings of the National Academy of Sciences of the United States of America | 28559337 | Proc Natl Acad Sci U S A | 2017 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/28559337 |
| Structure and Dynamics of PD-L1 and an Ultra-High-Affinity PD-1 Receptor Mutant. | Pascolutti R, Sun X, Kao J, Maute RL, Ring AM, Bowman GR, Kruse AC | Structure (London, England : 1993) | 27618663 | Structure | 2016 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/27618663 |
| Distinctive Activation Mechanism for Angiotensin Receptor Revealed by a Synthetic Nanobody. | Wingler LM, McMahon C, Staus DP, Lefkowitz RJ, Kruse AC | Cell | 30639100 | Cell | 2019 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/30639100 |
| Antibodies Expand the Scope of Angiotensin Receptor Pharmacology. | Skiba MA, Sterling SM, Rawson S, Gilman MSA, Xu H, Nemeth GR, Hurley JD, Shen P, Staus DP, Kim J, McMahon C, Lehtinen MK, Wingler LM, Kruse AC | bioRxiv : the preprint server for biology | 37662341 | bioRxiv | 2023 Aug 24 | https://www.ncbi.nlm.nih.gov/pubmed/37662341 |
| Angiotensin and biased analogs induce structurally distinct active conformations within a GPCR. | Wingler LM, Skiba MA, McMahon C, Staus DP, Kleinhenz ALW, Suomivuori CM, Latorraca NR, Dror RO, Lefkowitz RJ, Kruse AC | Science (New York, N.Y.) | 32079768 | Science | 2020 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/32079768 |
| Mapping and engineering the interaction between adiponectin and T-cadherin. | Pascolutti R, Erlandson SC, Burri DJ, Zheng S, Kruse AC | The Journal of biological chemistry | 31915248 | J Biol Chem | 2020 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/31915248 |
| Synthetic nanobodies as angiotensin receptor blockers. | McMahon C, Staus DP, Wingler LM, Wang J, Skiba MA, Elgeti M, Hubbell WL, Rockman HA, Kruse AC, Lefkowitz RJ | Proceedings of the National Academy of Sciences of the United States of America | 32753386 | Proc Natl Acad Sci U S A | 2020 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/32753386 |
| Cryo-EM structure of the B cell co-receptor CD19 bound to the tetraspanin CD81. | Susa KJ, Rawson S, Kruse AC, Blacklow SC | Science (New York, N.Y.) | 33446559 | Science | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/33446559 |
| Discovery of widespread type I and type V CRISPR-Cas inhibitors. | Marino ND, Zhang JY, Borges AL, Sousa AA, Leon LM, Rauch BJ, Walton RT, Berry JD, Joung JK, Kleinstiver BP, Bondy-Denomy J | Science (New York, N.Y.) | 30190308 | Science | 2018 Oct 12 | https://www.ncbi.nlm.nih.gov/pubmed/30190308 |
| Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer. | Mahendra C, Christie KA, Osuna BA, Pinilla-Redondo R, Kleinstiver BP, Bondy-Denomy J | Nature microbiology | 32218510 | Nat Microbiol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32218510 |
| Listeria Phages Induce Cas9 Degradation to Protect Lysogenic Genomes. | Osuna BA, Karambelkar S, Mahendra C, Christie KA, Garcia B, Davidson AR, Kleinstiver BP, Kilcher S, Bondy-Denomy J | Cell host & microbe | 32325050 | Cell Host Microbe | 2020 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/32325050 |
| Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements. | Pinilla-Redondo R, Shehreen S, Marino ND, Fagerlund RD, Brown CM, Sørensen SJ, Fineran PC, Bondy-Denomy J | Nature communications | 33159058 | Nat Commun | 2020 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/33159058 |
| CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity. | Marino ND, Pinilla-Redondo R, Bondy-Denomy J | Nucleic acids research | 35670674 | Nucleic Acids Res | 2022 Jun 24 | https://www.ncbi.nlm.nih.gov/pubmed/35670674 |
| Lack of Cas13a inhibition by anti-CRISPR proteins from Leptotrichia prophages. | Johnson MC, Hille LT, Kleinstiver BP, Meeske AJ, Bondy-Denomy J | Molecular cell | 35623354 | Mol Cell | 2022 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/35623354 |
| The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs. | Borges AL, Davidson AR, Bondy-Denomy J | Annual review of virology | 28749735 | Annu Rev Virol | 2017 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/28749735 |
| Quorum sensing controls the Pseudomonas aeruginosa CRISPR-Cas adaptive immune system. | Høyland-Kroghsbo NM, Paczkowski J, Mukherjee S, Broniewski J, Westra E, Bondy-Denomy J, Bassler BL | Proceedings of the National Academy of Sciences of the United States of America | 27849583 | Proc Natl Acad Sci U S A | 2017 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/27849583 |
| Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity. | Borges AL, Zhang JY, Rollins MF, Osuna BA, Wiedenheft B, Bondy-Denomy J | Cell | 30033364 | Cell | 2018 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/30033364 |
| Protein Inhibitors of CRISPR-Cas9. | Bondy-Denomy J | ACS chemical biology | 29251498 | ACS Chem Biol | 2018 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/29251498 |
| Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria. | Govindarajan S, Borges A, Karambelkar S, Bondy-Denomy J | Journal of bacteriology | 35389256 | J Bacteriol | 2022 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/35389256 |
| Intracellular Organization by Jumbo Bacteriophages. | Guan J, Bondy-Denomy J | Journal of bacteriology | 32868402 | J Bacteriol | 2020 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/32868402 |
| Anti-CRISPRs go viral: The infection biology of CRISPR-Cas inhibitors. | Li Y, Bondy-Denomy J | Cell host & microbe | 33444542 | Cell Host Microbe | 2021 May 12 | https://www.ncbi.nlm.nih.gov/pubmed/33444542 |
| Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. | Roux S, Krupovic M, Daly RA, Borges AL, Nayfach S, Schulz F, Sharrar A, Matheus Carnevali PB, Cheng JF, Ivanova NN, Bondy-Denomy J, Wrighton KC, Woyke T, Visel A, Kyrpides NC, Eloe-Fadrosh EA | Nature microbiology | 31332386 | Nat Microbiol | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31332386 |
| CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog. | Soto-Perez P, Bisanz JE, Berry JD, Lam KN, Bondy-Denomy J, Turnbaugh PJ | Cell host & microbe | 31492655 | Cell Host Microbe | 2019 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/31492655 |
| A compact Cascade-Cas3 system for targeted genome engineering. | Csörgő B, León LM, Chau-Ly IJ, Vasquez-Rifo A, Berry JD, Mahendra C, Crawford ED, Lewis JD, Bondy-Denomy J | Nature methods | 33077967 | Nat Methods | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33077967 |
| Inhibition of CRISPR-Cas9 with Bacteriophage Proteins. | Rauch BJ, Silvis MR, Hultquist JF, Waters CS, McGregor MJ, Krogan NJ, Bondy-Denomy J | Cell | 28041849 | Cell | 2017 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/28041849 |
| How bacteria control the CRISPR-Cas arsenal. | Leon LM, Mendoza SD, Bondy-Denomy J | Current opinion in microbiology | 29169146 | Curr Opin Microbiol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29169146 |
| The diversity-generating benefits of a prokaryotic adaptive immune system. | van Houte S, Ekroth AK, Broniewski JM, Chabas H, Ashby B, Bondy-Denomy J, Gandon S, Boots M, Paterson S, Buckling A, Westra ER | Nature | 27074511 | Nature | 2016 Apr 21 | https://www.ncbi.nlm.nih.gov/pubmed/27074511 |
| Disabling Cas9 by an anti-CRISPR DNA mimic. | Shin J, Jiang F, Liu JJ, Bray NL, Rauch BJ, Baik SH, Nogales E, Bondy-Denomy J, Corn JE, Doudna JA | Science advances | 28706995 | Sci Adv | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28706995 |
| Cas1 and the Csy complex are opposing regulators of Cas2/3 nuclease activity. | Rollins MF, Chowdhury S, Carter J, Golden SM, Wilkinson RA, Bondy-Denomy J, Lander GC, Wiedenheft B | Proceedings of the National Academy of Sciences of the United States of America | 28438998 | Proc Natl Acad Sci U S A | 2017 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/28438998 |
| Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex. | Chowdhury S, Carter J, Rollins MF, Golden SM, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B | Cell | 28340349 | Cell | 2017 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/28340349 |
| Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies. | Marino ND, Pinilla-Redondo R, Csörgő B, Bondy-Denomy J | Nature methods | 32203383 | Nat Methods | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32203383 |
| Anti-CRISPR-Associated Proteins Are Crucial Repressors of Anti-CRISPR Transcription. | Stanley SY, Borges AL, Chen KH, Swaney DL, Krogan NJ, Bondy-Denomy J, Davidson AR | Cell | 31474367 | Cell | 2019 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/31474367 |
| Temperature-Responsive Competitive Inhibition of CRISPR-Cas9. | Jiang F, Liu JJ, Osuna BA, Xu M, Berry JD, Rauch BJ, Nogales E, Bondy-Denomy J, Doudna JA | Molecular cell | 30595438 | Mol Cell | 2019 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/30595438 |
| A Type IV-A CRISPR-Cas System in Pseudomonas aeruginosa Mediates RNA-Guided Plasmid Interference In Vivo. | Crowley VM, Catching A, Taylor HN, Borges AL, Metcalf J, Bondy-Denomy J, Jackson RN | The CRISPR journal | 31809194 | CRISPR J | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31809194 |
| Cas13 Helps Bacteria Play Dead when the Enemy Strikes. | Mendoza SD, Bondy-Denomy J | Cell host & microbe | 31295418 | Cell Host Microbe | 2019 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/31295418 |
| Mobile element warfare via CRISPR and anti-CRISPR in Pseudomonas aeruginosa. | León LM, Park AE, Borges AL, Zhang JY, Bondy-Denomy J | Nucleic acids research | 33544853 | Nucleic Acids Res | 2021 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/33544853 |
| Structures and Strategies of Anti-CRISPR-Mediated Immune Suppression. | Wiegand T, Karambelkar S, Bondy-Denomy J, Wiedenheft B | Annual review of microbiology | 32503371 | Annu Rev Microbiol | 2020 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/32503371 |
| Critical Anti-CRISPR Locus Repression by a Bi-functional Cas9 Inhibitor. | Osuna BA, Karambelkar S, Mahendra C, Sarbach A, Johnson MC, Kilcher S, Bondy-Denomy J | Cell host & microbe | 32325051 | Cell Host Microbe | 2020 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/32325051 |
| Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity. | Borges AL, Castro B, Govindarajan S, Solvik T, Escalante V, Bondy-Denomy J | Nature microbiology | 32203410 | Nat Microbiol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32203410 |
| A bacteriophage nucleus-like compartment shields DNA from CRISPR nucleases. | Mendoza SD, Nieweglowska ES, Govindarajan S, Leon LM, Berry JD, Tiwari A, Chaikeeratisak V, Pogliano J, Agard DA, Bondy-Denomy J | Nature | 31819262 | Nature | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31819262 |
| CRISPR control of virulence in Pseudomonas aeruginosa. | Wiedenheft B, Bondy-Denomy J | Cell research | 28084330 | Cell Res | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/28084330 |
| Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems. | Taylor HN, Laderman E, Armbrust M, Hallmark T, Keiser D, Bondy-Denomy J, Jackson RN | Frontiers in microbiology | 34093491 | Front Microbiol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34093491 |
| Unconventional natural gas development and pediatric asthma hospitalizations in Pennsylvania. | Willis MD, Jusko TA, Halterman JS, Hill EL | Environmental research | 29936288 | Environ Res | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/29936288 |
| Unconventional natural gas development and hospitalizations: evidence from Pennsylvania, United States, 2003-2014. | Denham A, Willis M, Zavez A, Hill E | Public health | 30677623 | Public Health | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30677623 |
| The National COVID Cohort Collaborative: Clinical Characterization and Early Severity Prediction. | Bennett TD, Moffitt RA, Hajagos JG, Amor B, Anand A, Bissell MM, Bradwell KR, Bremer C, Byrd JB, Denham A, DeWitt PE, Gabriel D, Garibaldi BT, Girvin AT, Guinney J, Hill EL, Hong SS, Jimenez H, Kavuluru R, Kostka K, Lehmann HP, Levitt E, Mallipattu SK, Manna A, McMurry JA, Morris M, Muschelli J, Neumann AJ, Palchuk MB, Pfaff ER, Qian Z, Qureshi N, Russell S, Spratt H, Walden A, Williams AE, Wooldridge JT, Yoo YJ, Zhang XT, Zhu RL, Austin CP, Saltz JH, Gersing KR, Haendel MA, Chute CG, N3C Consortium | medRxiv : the preprint server for health sciences | 33469592 | medRxiv | 2021 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/33469592 |
| Drinking Water Contaminant Concentrations and Birth Outcomes. | DiSalvo RW, Hill EL | Journal of policy analysis and management : [the journal of the Association for Public Policy Analysis and Management] | 38983462 | J Policy Anal Manage | 2024 Spring | https://www.ncbi.nlm.nih.gov/pubmed/38983462 |
| Shale gas transmission and housing prices. | Boslett A, Hill E | Resource and energy economics | 36620650 | Resour Energy Econ | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36620650 |
| Rural Light Pollution from Shale Gas Development and Associated Sleep and Subjective Well-Being. | Boslett A, Hill E, Ma L, Zhang L | Resource and energy economics | 36643952 | Resour Energy Econ | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/36643952 |
| Mortality during Resource Booms and Busts. | Boslett A, Hill E | Journal of environmental economics and management | 36643912 | J Environ Econ Manage | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36643912 |
| Acute myocardial infarction associated with unconventional natural gas development: A natural experiment. | Denham A, Willis MD, Croft DP, Liu L, Hill EL | Environmental research | 33581094 | Environ Res | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33581094 |
| Unclassified drug overdose deaths in the opioid crisis: emerging patterns of inequity. | Boslett AJ, Denham A, Hill EL, Adams MCB | Journal of the American Medical Informatics Association : JAMIA | 31034076 | J Am Med Inform Assoc | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31034076 |
| Using contributing causes of death improves prediction of opioid involvement in unclassified drug overdoses in US death records. | Boslett AJ, Denham A, Hill EL | Addiction (Abingdon, England) | 32106355 | Addiction | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32106355 |
| Social distancing merely stabilized COVID-19 in the United States. | Wagner AB, Hill EL, Ryan SE, Sun Z, Deng G, Bhadane S, Hernandez Martinez V, Wu P, Li D, Anand A, Acharya J, Matteson DS | Stat (International Statistical Institute) | 32837718 | Stat (Int Stat Inst) | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32837718 |
| Natural gas development, flaring practices and paediatric asthma hospitalizations in Texas. | Willis M, Hystad P, Denham A, Hill E | International journal of epidemiology | 32879945 | Int J Epidemiol | 2021 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/32879945 |
| Where you drink water: An assessment of the Tennessee, USA public water supply. | Ding KJ, Hornberger G, Hill E, McDonald YJ | Water | 37476080 | Water (Basel) | 2022 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/37476080 |
| Shale gas development and infant health: Evidence from Pennsylvania. | Hill EL | Journal of health economics | 30114565 | J Health Econ | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30114565 |
| Shale Gas Development and Drinking Water Quality. | Hill E, Ma L | The American economic review | 29430021 | Am Econ Rev | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/29430021 |
| Associations between Residential Proximity to Oil and Gas Drilling and Term Birth Weight and Small-for-Gestational-Age Infants in Texas: A Difference-in-Differences Analysis. | Willis MD, Hill EL, Boslett A, Kile ML, Carozza SE, Hystad P | Environmental health perspectives | 34287013 | Environ Health Perspect | 2021 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34287013 |
| Fatal opioid overdoses in the U.S. declined more than reported between 2017 and 2018. | Boslett A, Denham A, Hill E | The American journal of drug and alcohol abuse | 34107224 | Am J Drug Alcohol Abuse | 2021 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/34107224 |
| The fracking concern with water quality. | Hill E, Ma L | Science (New York, N.Y.) | 34413223 | Science | 2021 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/34413223 |
| Associations between residential proximity to oil and gas extraction and hypertensive conditions during pregnancy: a difference-in-differences analysis in Texas, 1996-2009. | Willis MD, Hill EL, Kile ML, Carozza S, Hystad P | International journal of epidemiology | 34897479 | Int J Epidemiol | 2022 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/34897479 |
| Drinking water, fracking, and infant health. | Hill EL, Ma L | Journal of health economics | 35172241 | J Health Econ | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35172241 |
| Antigen Density Dictates Immune Responsiveness following Red Blood Cell Transfusion. | Arthur CM, Patel SR, Smith NH, Bennett A, Kamili NA, Mener A, Gerner-Smidt C, Sullivan HC, Hale JS, Wieland A, Youngblood B, Zimring JC, Hendrickson JE, Stowell SR | Journal of immunology (Baltimore, Md. : 1950) | 28250159 | J Immunol | 2017 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/28250159 |
| Generation and Use of Recombinant Galectins. | Wu SC, Paul A, Ho A, Patel KR, Allen JWL, Verkerke H, Arthur CM, Stowell SR | Current protocols | 33656274 | Curr Protoc | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33656274 |
| Daratumumab (anti-CD38) induces loss of CD38 on red blood cells. | Sullivan HC, Gerner-Smidt C, Nooka AK, Arthur CM, Thompson L, Mener A, Patel SR, Yee M, Fasano RM, Josephson CD, Kaufman RM, Roback JD, Lonial S, Stowell SR | Blood | 28373263 | Blood | 2017 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/28373263 |
| Examining the Role of Complement in Predicting, Preventing, and Treating Hemolytic Transfusion Reactions. | Arthur CM, Chonat S, Fasano R, Yee MEM, Josephson CD, Roback JD, Stowell SR | Transfusion medicine reviews | 31679762 | Transfus Med Rev | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31679762 |
| ABO blood group antigens and differential glycan expression: Perspective on the evolution of common human enzyme deficiencies. | Jajosky RP, Wu SC, Zheng L, Jajosky AN, Jajosky PG, Josephson CD, Hollenhorst MA, Sackstein R, Cummings RD, Arthur CM, Stowell SR | iScience | 36691627 | iScience | 2023 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/36691627 |
| Intestinal epithelial glycosylation in homeostasis and gut microbiota interactions in IBD. | Kudelka MR, Stowell SR, Cummings RD, Neish AS | Nature reviews. Gastroenterology & hepatology | 32710014 | Nat Rev Gastroenterol Hepatol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32710014 |
| Fc Gamma Receptors and Complement Component 3 Facilitate Anti-fVIII Antibody Formation. | Zerra PE, Arthur CM, Chonat S, Maier CL, Mener A, Shin S, Allen JWL, Baldwin WH, Cox C, Verkerke H, Jajosky RP, Tormey CA, Meeks SL, Stowell SR | Frontiers in immunology | 32582142 | Front Immunol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32582142 |
| Galectin-9 Is a Novel Regulator of Epithelial Restitution. | Robinson BS, Saeedi B, Arthur CM, Owens J, Naudin C, Ahmed N, Luo L, Jones R, Neish A, Stowell SR | The American journal of pathology | 32380082 | Am J Pathol | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/32380082 |
| Innate immunity against molecular mimicry: Examining galectin-mediated antimicrobial activity. | Arthur CM, Patel SR, Mener A, Kamili NA, Fasano RM, Meyer E, Winkler AM, Sola-Visner M, Josephson CD, Stowell SR | BioEssays : news and reviews in molecular, cellular and developmental biology | 26577077 | Bioessays | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26577077 |
| Protein glycosylation in cancer. | Stowell SR, Ju T, Cummings RD | Annual review of pathology | 25621663 | Annu Rev Pathol | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25621663 |
| Galectin-9 recognizes and exhibits antimicrobial activity toward microbes expressing blood group-like antigens. | Blenda AV, Kamili NA, Wu SC, Abel WF, Ayona D, Gerner-Smidt C, Ho AD, Benian GM, Cummings RD, Arthur CM, Stowell SR | The Journal of biological chemistry | 35148986 | J Biol Chem | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35148986 |
| Complement Component 3 Negatively Regulates Antibody Response by Modulation of Red Blood Cell Antigen. | Mener A, Arthur CM, Patel SR, Liu J, Hendrickson JE, Stowell SR | Frontiers in immunology | 29942300 | Front Immunol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29942300 |
| Recipient priming to one RBC alloantigen directly enhances subsequent alloimmunization in mice. | Patel SR, Bennett A, Girard-Pierce K, Maier CL, Chonat S, Arthur CM, Zerra PE, Mener A, Stowell SR | Blood advances | 29365318 | Blood Adv | 2018 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/29365318 |
| Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk. | Kudelka MR, Hinrichs BH, Darby T, Moreno CS, Nishio H, Cutler CE, Wang J, Wu H, Zeng J, Wang Y, Ju T, Stowell SR, Nusrat A, Jones RM, Neish AS, Cummings RD | Proceedings of the National Academy of Sciences of the United States of America | 27930307 | Proc Natl Acad Sci U S A | 2016 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/27930307 |
| Complement serves as a switch between CD4+ T cell-independent and -dependent RBC antibody responses. | Mener A, Patel SR, Arthur CM, Chonat S, Wieland A, Santhanakrishnan M, Liu J, Maier CL, Jajosky RP, Girard-Pierce K, Bennett A, Zerra PE, Smith NH, Hendrickson JE, Stowell SR | JCI insight | 30429364 | JCI Insight | 2018 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/30429364 |
| The Sweet-Side of Leukocytes: Galectins as Master Regulators of Neutrophil Function. | Robinson BS, Arthur CM, Evavold B, Roback E, Kamili NA, Stowell CS, Vallecillo-Zúniga ML, Van Ry PM, Dias-Baruffi M, Cummings RD, Stowell SR | Frontiers in immunology | 31440233 | Front Immunol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31440233 |
| Antibody-mediated immunosuppression can result from RBC antigen loss independent of Fcγ receptors in mice. | Mener A, Patel SR, Arthur CM, Stowell SR | Transfusion | 30474857 | Transfusion | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30474857 |
| Nonhuman glycans can regulate anti-factor VIII antibody formation in mice. | Arthur CM, Zerra PE, Shin S, Wang J, Song X, Doering CB, Lollar P, Meeks S, Stowell SR | Blood | 34019619 | Blood | 2022 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/34019619 |
| CD8+ T cells mediate antibody-independent platelet clearance in mice. | Arthur CM, Patel SR, Sullivan HC, Winkler AM, Tormey CA, Hendrickson JE, Stowell SR | Blood | 26787734 | Blood | 2016 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/26787734 |
| Key regulators of galectin-glycan interactions. | Kamili NA, Arthur CM, Gerner-Smidt C, Tafesse E, Blenda A, Dias-Baruffi M, Stowell SR | Proteomics | 27582340 | Proteomics | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27582340 |
| Marginal zone B cells mediate a CD4 T-cell-dependent extrafollicular antibody response following RBC transfusion in mice. | Zerra PE, Patel SR, Jajosky RP, Arthur CM, McCoy JW, Allen JWL, Chonat S, Fasano RM, Roback JD, Josephson CD, Hendrickson JE, Stowell SR | Blood | 33876205 | Blood | 2021 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/33876205 |
| The role of galectins in immunity and infection. | Liu FT, Stowell SR | Nature reviews. Immunology | 36646848 | Nat Rev Immunol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/36646848 |
| Innate immune Galectin-7 specifically targets microbes that decorate themselves in blood group-like antigens. | Wu SC, Kamili NA, Dias-Baruffi M, Josephson CD, Rathgeber MF, Yeung MY, Lane WJ, Wang J, Jan HM, Rakoff-Nahoum S, Cummings RD, Stowell SR, Arthur CM | iScience | 35754739 | iScience | 2022 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/35754739 |
| Full-Length Galectin-3 Is Required for High Affinity Microbial Interactions and Antimicrobial Activity. | Wu SC, Ho AD, Kamili NA, Wang J, Murdock KL, Cummings RD, Arthur CM, Stowell SR | Frontiers in microbiology | 34690972 | Front Microbiol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34690972 |
| A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface. | Wu H, Shajahan A, Yang JY, Capota E, Wands AM, Arthur CM, Stowell SR, Moremen KW, Azadi P, Kohler JJ | Cell chemical biology | 34331854 | Cell Chem Biol | 2022 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/34331854 |
| Targeting altered glycosylation in secreted tumor glycoproteins for broad cancer detection. | Kudelka MR, Gu W, Matsumoto Y, Ju T, Barnes Ii RH, Kardish RJ, Heimburg-Molinaro J, Lehoux S, Zeng J, Cohen C, Robinson BS, Shah KS, Chaikof EL, Stowell SR, Cummings RD | Glycobiology | 37216646 | Glycobiology | 2023 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/37216646 |
| Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease. | Randles A, Frakes DH, Leopold JA | Trends in biotechnology | 28942268 | Trends Biotechnol | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28942268 |
| Accelerating massively parallel hemodynamic models of coarctation of the aorta using neural networks. | Feiger B, Gounley J, Adler D, Leopold JA, Draeger EW, Chaudhury R, Ryan J, Pathangey G, Winarta K, Frakes D, Michor F, Randles A | Scientific reports | 32528104 | Sci Rep | 2020 Jun 11 | https://www.ncbi.nlm.nih.gov/pubmed/32528104 |
| Determining the impacts of venoarterial extracorporeal membrane oxygenation on cerebral oxygenation using a one-dimensional blood flow simulator. | Feiger B, Kochar A, Gounley J, Bonadonna D, Daneshmand M, Randles A | Journal of biomechanics | 32220425 | J Biomech | 2020 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/32220425 |
| Multiscale modeling of blood flow to assess neurological complications in patients supported by venoarterial extracorporeal membrane oxygenation. | Feiger B, Adebiyi A, Randles A | Computers in biology and medicine | 33333365 | Comput Biol Med | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33333365 |
| Computational modelling of perivascular-niche dynamics for the optimization of treatment schedules for glioblastoma. | Randles A, Wirsching HG, Dean JA, Cheng YK, Emerson S, Pattwell SS, Holland EC, Michor F | Nature biomedical engineering | 33864039 | Nat Biomed Eng | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33864039 |
| Computational Framework to Evaluate the Hydrodynamics of Cell Scaffold Geometries. | Puleri DF, Roychowdhury S, Ames J, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 33018467 | Annu Int Conf IEEE Eng Med Biol Soc | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33018467 |
| Computing the ankle-brachial index with parallel computational fluid dynamics. | Gounley J, Draeger EW, Oppelstrup T, Krauss WD, Gunnels JA, Chaudhury R, Nair P, Frakes D, Leopold JA, Randles A | Journal of biomechanics | 30385003 | J Biomech | 2019 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/30385003 |
| Non-invasive characterization of complex coronary lesions. | Vardhan M, Gounley J, Chen SJ, Chi EC, Kahn AM, Leopold JA, Randles A | Scientific reports | 33854076 | Sci Rep | 2021 Apr 14 | https://www.ncbi.nlm.nih.gov/pubmed/33854076 |
| Characterization of hemodynamics in anomalous aortic origin of coronary arteries using patient-specific modeling. | Chidyagwai SG, Vardhan M, Kaplan M, Chamberlain R, Barker P, Randles A | Journal of biomechanics | 35063831 | J Biomech | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35063831 |
| Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature. | Randles A, Draeger EW, Bailey PE | Journal of computational science | 29152011 | J Comput Sci | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29152011 |
| Numerical simulation of a compound capsule in a constricted microchannel. | Gounley J, Draeger EW, Randles A | Procedia computer science | 28831291 | Procedia Comput Sci | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28831291 |
| Modeling the effect of patient size on cerebral perfusion during veno-arterial extracorporeal membrane oxygenation. | Feiger B, Jensen CW, Bryner BS, Segars WP, Randles A | Perfusion | 37395266 | Perfusion | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37395266 |
| Rapid Ventilator Splitting During COVID-19 Pandemic Using 3D Printed Devices and Numerical Modeling of 200 Million Patient Specific Air Flow Scenarios. | Bishawi M, Kaplan M, Chidyagwai S, Cappiello J, Cherry A, MacLeod D, Gall K, Evans N, Kim M, Shaha R, Whittle J, Hollidge M, Truskey G, Randles A | Research square | 32818206 | Res Sq | 2020 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/32818206 |
| Hemodynamic and morphological characteristics of a growing cerebral aneurysm. | Dabagh M, Nair P, Gounley J, Frakes D, Gonzalez LF, Randles A | Neurosurgical focus | 31261117 | Neurosurg Focus | 2019 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/31261117 |
| Suitability of lattice Boltzmann inlet and outlet boundary conditions for simulating flow in image-derived vasculature. | Feiger B, Vardhan M, Gounley J, Mortensen M, Nair P, Chaudhury R, Frakes D, Randles A | International journal for numerical methods in biomedical engineering | 30838793 | Int J Numer Method Biomed Eng | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30838793 |
| Investigating the Interaction Between Circulating Tumor Cells and Local Hydrodynamics via Experiment and Simulations. | Pepona M, Balogh P, Puleri DF, Hynes WF, Robertson C, Dubbin K, Alvarado J, Moya ML, Randles A | Cellular and molecular bioengineering | 33184581 | Cell Mol Bioeng | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33184581 |
| Surgical Modulation of Pulmonary Artery Shear Stress: A Patient-Specific CFD Analysis of the Norwood Procedure. | Chidyagwai SG, Kaplan MS, Jensen CW, Chen JS, Chamberlain RC, Hill KD, Barker PCA, Slesnick TC, Randles A | Cardiovascular engineering and technology | 38459240 | Cardiovasc Eng Technol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38459240 |
| Propagation pattern for moment representation of the lattice Boltzmann method. | Gounley J, Vardhan M, Draeger EW, Valero-Lara P, Moore SV, Randles A | IEEE transactions on parallel and distributed systems : a publication of the IEEE Computer Society | 35498162 | IEEE Trans Parallel Distrib Syst | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35498162 |
| The role of adhesive receptor patterns on cell transport in complex microvessels. | Puleri DF, Randles A | Biomechanics and modeling in mechanobiology | 35507242 | Biomech Model Mechanobiol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35507242 |
| A Framework for Comparing Vascular Hemodynamics at Different Points in Time. | Gounley J, Vardhan M, Randles A | Computer physics communications | 30504967 | Comput Phys Commun | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30504967 |
| Multi-GPU Immersed Boundary Method Hemodynamics Simulations. | Ames J, Puleri DF, Balogh P, Gounley J, Draeger EW, Randles A | Journal of computational science | 32754287 | J Comput Sci | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32754287 |
| Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity? | Gounley J, Chaudhury R, Vardhan M, Driscoll M, Pathangey G, Winarta K, Ryan J, Frakes D, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 28269039 | Annu Int Conf IEEE Eng Med Biol Soc | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28269039 |
| Multivascular networks and functional intravascular topologies within biocompatible hydrogels. | Grigoryan B, Paulsen SJ, Corbett DC, Sazer DW, Fortin CL, Zaita AJ, Greenfield PT, Calafat NJ, Gounley JP, Ta AH, Johansson F, Randles A, Rosenkrantz JE, Louis-Rosenberg JD, Galie PA, Stevens KR, Miller JS | Science (New York, N.Y.) | 31048486 | Science | 2019 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/31048486 |
| Localization of Rolling and Firm-Adhesive Interactions Between Circulating Tumor Cells and the Microvasculature Wall. | Dabagh M, Gounley J, Randles A | Cellular and molecular bioengineering | 32175027 | Cell Mol Bioeng | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32175027 |
| Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1. | Hill AL, Rosenbloom DI, Fu F, Nowak MA, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 25097264 | Proc Natl Acad Sci U S A | 2014 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/25097264 |
| Mathematical Models of HIV Latency. | Hill AL | Current topics in microbiology and immunology | 29164341 | Curr Top Microbiol Immunol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29164341 |
| Ex vivo analysis identifies effective HIV-1 latency-reversing drug combinations. | Laird GM, Bullen CK, Rosenbloom DI, Martin AR, Hill AL, Durand CM, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 25822022 | J Clin Invest | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25822022 |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | PLoS computational biology | 33534808 | PLoS Comput Biol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33534808 |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe AH, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | Nature communications | 33859196 | Nat Commun | 2021 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/33859196 |
| Vaccine failure mode determines population-level impact of vaccination campaigns during epidemics. | Lee DI, Nande A, Anderson TL, Levy MZ, Hill AL | Journal of the Royal Society, Interface | 39965640 | J R Soc Interface | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39965640 |
| Designing and Interpreting Limiting Dilution Assays: General Principles and Applications to the Latent Reservoir for Human Immunodeficiency Virus-1. | Rosenbloom DI, Elliott O, Hill AL, Henrich TJ, Siliciano JM, Siliciano RF | Open forum infectious diseases | 26478893 | Open Forum Infect Dis | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26478893 |
| Dynamics of bed bug infestations and control under disclosure policies. | Xie S, Hill AL, Rehmann CR, Levy MZ | Proceedings of the National Academy of Sciences of the United States of America | 30833386 | Proc Natl Acad Sci U S A | 2019 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/30833386 |
| Development of an oral once-weekly drug delivery system for HIV antiretroviral therapy. | Kirtane AR, Abouzid O, Minahan D, Bensel T, Hill AL, Selinger C, Bershteyn A, Craig M, Mo SS, Mazdiyasni H, Cleveland C, Rogner J, Lee YL, Booth L, Javid F, Wu SJ, Grant T, Bellinger AM, Nikolic B, Hayward A, Wood L, Eckhoff PA, Nowak MA, Langer R, Traverso G | Nature communications | 29317618 | Nat Commun | 2018 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/29317618 |
| Insight into treatment of HIV infection from viral dynamics models. | Hill AL, Rosenbloom DIS, Nowak MA, Siliciano RF | Immunological reviews | 30129208 | Immunol Rev | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30129208 |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | Epidemics | 37556994 | Epidemics | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37556994 |
| Population structure across scales facilitates coexistence and spatial heterogeneity of antibiotic-resistant infections. | Krieger MS, Denison CE, Anderson TL, Nowak MA, Hill AL | PLoS computational biology | 32628660 | PLoS Comput Biol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32628660 |
| Crowding and the shape of COVID-19 epidemics. | Rader B, Scarpino SV, Nande A, Hill AL, Adlam B, Reiner RC, Pigott DM, Gutierrez B, Zarebski AE, Shrestha M, Brownstein JS, Castro MC, Dye C, Tian H, Pybus OG, Kraemer MUG | Nature medicine | 33020651 | Nat Med | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33020651 |
| The effect of eviction moratoria on the transmission of SARS-CoV-2. | Nande A, Sheen J, Walters EL, Klein B, Chinazzi M, Gheorghe A, Adlam B, Shinnick J, Tejeda MF, Scarpino SV, Vespignani A, Greenlee AJ, Schneider D, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 33140067 | medRxiv | 2021 Jan 19 | https://www.ncbi.nlm.nih.gov/pubmed/33140067 |
| Chaos synchronization and Nelder-Mead search for parameter estimation in nonlinear pharmacological systems: Estimating tumor antigenicity in a model of immunotherapy. | Pillai N, Craig M, Dokoumetzidis A, Schwartz SL, Bies R, Freedman I | Progress in biophysics and molecular biology | 29928905 | Prog Biophys Mol Biol | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/29928905 |
| Expanded cellular clones carrying replication-competent HIV-1 persist, wax, and wane. | Wang Z, Gurule EE, Brennan TP, Gerold JM, Kwon KJ, Hosmane NN, Kumar MR, Beg SA, Capoferri AA, Ray SC, Ho YC, Hill AL, Siliciano JD, Siliciano RF | Proceedings of the National Academy of Sciences of the United States of America | 29483265 | Proc Natl Acad Sci U S A | 2018 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/29483265 |
| An upper bound for the half-removal time of neutrophils from circulation. | Craig M, Humphries AR, Mackey MC | Blood | 27578816 | Blood | 2016 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/27578816 |
| Modeling HIV persistence and cure studies. | Hill AL | Current opinion in HIV and AIDS | 29916846 | Curr Opin HIV AIDS | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29916846 |
| TLR7 agonists induce transient viremia and reduce the viral reservoir in SIV-infected rhesus macaques on antiretroviral therapy. | Lim SY, Osuna CE, Hraber PT, Hesselgesser J, Gerold JM, Barnes TL, Sanisetty S, Seaman MS, Lewis MG, Geleziunas R, Miller MD, Cihlar T, Lee WA, Hill AL, Whitney JB | Science translational medicine | 29720451 | Sci Transl Med | 2018 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/29720451 |
| Life cycle synchronization is a viral drug resistance mechanism. | Neagu IA, Olejarz J, Freeman M, Rosenbloom DIS, Nowak MA, Hill AL | PLoS computational biology | 29447150 | PLoS Comput Biol | 2018 Feb | https://www.ncbi.nlm.nih.gov/pubmed/29447150 |
| Insufficient Evidence for Rare Activation of Latent HIV in the Absence of Reservoir-Reducing Interventions. | Hill AL, Rosenbloom DI, Siliciano JD, Siliciano RF | PLoS pathogens | 27560936 | PLoS Pathog | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/27560936 |
| Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance. | Moreno-Gamez S, Hill AL, Rosenbloom DI, Petrov DA, Nowak MA, Pennings PS | Proceedings of the National Academy of Sciences of the United States of America | 26038564 | Proc Natl Acad Sci U S A | 2015 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/26038564 |
| Dynamics of COVID-19 under social distancing measures are driven by transmission network structure. | Nande A, Adlam B, Sheen J, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 32577691 | medRxiv | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/32577691 |
| A Blueprint for Identifying Phenotypes and Drug Targets in Complex Disorders with Empirical Dynamics. | Krieger MS, Moreau JM, Zhang H, Chien M, Zehnder JL, Craig M | Patterns (New York, N.Y.) | 33336196 | Patterns (N Y) | 2020 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/33336196 |
| Antigen-driven clonal selection shapes the persistence of HIV-1-infected CD4+ T cells in vivo. | Simonetti FR, Zhang H, Soroosh GP, Duan J, Rhodehouse K, Hill AL, Beg SA, McCormick K, Raymond HE, Nobles CL, Everett JK, Kwon KJ, White JA, Lai J, Margolick JB, Hoh R, Deeks SG, Bushman FD, Siliciano JD, Siliciano RF | The Journal of clinical investigation | 33301425 | J Clin Invest | 2021 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/33301425 |
| Ad26/MVA therapeutic vaccination with TLR7 stimulation in SIV-infected rhesus monkeys. | Borducchi EN, Cabral C, Stephenson KE, Liu J, Abbink P, Ng'ang'a D, Nkolola JP, Brinkman AL, Peter L, Lee BC, Jimenez J, Jetton D, Mondesir J, Mojta S, Chandrashekar A, Molloy K, Alter G, Gerold JM, Hill AL, Lewis MG, Pau MG, Schuitemaker H, Hesselgesser J, Geleziunas R, Kim JH, Robb ML, Michael NL, Barouch DH | Nature | 27841870 | Nature | 2016 Dec 8 | https://www.ncbi.nlm.nih.gov/pubmed/27841870 |
| Real-Time Predictions of Reservoir Size and Rebound Time during Antiretroviral Therapy Interruption Trials for HIV. | Hill AL, Rosenbloom DI, Goldstein E, Hanhauser E, Kuritzkes DR, Siliciano RF, Henrich TJ | PLoS pathogens | 27119536 | PLoS Pathog | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/27119536 |
| Towards Quantitative Systems Pharmacology Models of Chemotherapy-Induced Neutropenia. | Craig M | CPT: pharmacometrics & systems pharmacology | 28418603 | CPT Pharmacometrics Syst Pharmacol | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28418603 |
| Re-evaluating evolution in the HIV reservoir. | Rosenbloom DIS, Hill AL, Laskey SB, Siliciano RF | Nature | 29168805 | Nature | 2017 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/29168805 |
| Cooperative adaptation to therapy (CAT) confers resistance in heterogeneous non-small cell lung cancer. | Craig M, Kaveh K, Woosley A, Brown AS, Goldman D, Eton E, Mehta RM, Dhawan A, Arai K, Rahman MM, Chen S, Nowak MA, Goldman A | PLoS computational biology | 31449515 | PLoS Comput Biol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31449515 |
| Evolution and emergence of infectious diseases in theoretical and real-world networks. | Leventhal GE, Hill AL, Nowak MA, Bonhoeffer S | Nature communications | 25592476 | Nat Commun | 2015 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/25592476 |
| Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies. | Anderson TL, Nande A, Merenstein C, Raynor B, Oommen A, Kelly BJ, Levy MZ, Hill AL | medRxiv : the preprint server for health sciences | 36523404 | medRxiv | 2022 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/36523404 |
| A Systematic Review of Coronavirus Disease 2019 Vaccine Efficacy and Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Disease. | Higdon MM, Wahl B, Jones CB, Rosen JG, Truelove SA, Baidya A, Nande AA, ShamaeiZadeh PA, Walter KK, Feikin DR, Patel MK, Deloria Knoll M, Hill AL | Open forum infectious diseases | 35611346 | Open Forum Infect Dis | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35611346 |
| Elevated blood pressure and household solid fuel use in premenopausal women: Analysis of 12 Demographic and Health Surveys (DHS) from 10 countries. | Arku RE, Ezzati M, Baumgartner J, Fink G, Zhou B, Hystad P, Brauer M | Environmental research | 29107891 | Environ Res | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29107891 |
| Global Land Use Regression Model for Nitrogen Dioxide Air Pollution. | Larkin A, Geddes JA, Martin RV, Xiao Q, Liu Y, Marshall JD, Brauer M, Hystad P | Environmental science & technology | 28520422 | Environ Sci Technol | 2017 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/28520422 |
| Modifiable risk factors, cardiovascular disease, and mortality in 155 722 individuals from 21 high-income, middle-income, and low-income countries (PURE): a prospective cohort study. | Yusuf S, Joseph P, Rangarajan S, Islam S, Mente A, Hystad P, Brauer M, Kutty VR, Gupta R, Wielgosz A, AlHabib KF, Dans A, Lopez-Jaramillo P, Avezum A, Lanas F, Oguz A, Kruger IM, Diaz R, Yusoff K, Mony P, Chifamba J, Yeates K, Kelishadi R, Yusufali A, Khatib R, Rahman O, Zatonska K, Iqbal R, Wei L, Bo H, Rosengren A, Kaur M, Mohan V, Lear SA, Teo KK, Leong D, O'Donnell M, McKee M, Dagenais G | Lancet (London, England) | 31492503 | Lancet | 2020 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/31492503 |
| Characterizing exposure to household air pollution within the Prospective Urban Rural Epidemiology (PURE) study. | Arku RE, Birch A, Shupler M, Yusuf S, Hystad P, Brauer M | Environment international | 29567495 | Environ Int | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/29567495 |
| Associations of outdoor fine particulate air pollution and cardiovascular disease in 157 436 individuals from 21 high-income, middle-income, and low-income countries (PURE): a prospective cohort study. | Hystad P, Larkin A, Rangarajan S, AlHabib KF, Avezum Á, Calik KBT, Chifamba J, Dans A, Diaz R, du Plessis JL, Gupta R, Iqbal R, Khatib R, Kelishadi R, Lanas F, Liu Z, Lopez-Jaramillo P, Nair S, Poirier P, Rahman O, Rosengren A, Swidan H, Tse LA, Wei L, Wielgosz A, Yeates K, Yusoff K, Zatoński T, Burnett R, Yusuf S, Brauer M | The Lancet. Planetary health | 32559440 | Lancet Planet Health | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32559440 |
| Interaction of Depression and Unhealthy Diets on the Risk of Cardiovascular Diseases and All-Cause Mortality in the Chinese Population: A PURE Cohort Substudy. | Lang X, Liu Z, Islam S, Han G, Rangarajan S, Tse LA, Mushtaha M, Wang J, Hu L, Qiang D, Zhu Y, Yusuf S, Lin Y, Hu B, On Behalf Of The Pure-China Investigators | Nutrients | 36501202 | Nutrients | 2022 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/36501202 |
| Urbanization and physical activity in the global Prospective Urban and Rural Epidemiology study. | Boakye K, Bovbjerg M, Schuna J Jr, Branscum A, Varma RP, Ismail R, Barbarash O, Dominguez J, Altuntas Y, Anjana RM, Yusuf R, Kelishadi R, Lopez-Jaramillo P, Iqbal R, Serón P, Rosengren A, Poirier P, Lakshmi PVM, Khatib R, Zatonska K, Hu B, Yin L, Wang C, Yeates K, Chifamba J, Alhabib KF, Avezum Á, Dans A, Lear SA, Yusuf S, Hystad P | Scientific reports | 36609613 | Sci Rep | 2023 Jan 6 | https://www.ncbi.nlm.nih.gov/pubmed/36609613 |
| Household, Community, Sub-National and Country-level Predictors of Primary Cooking Fuel Switching in Nine Countries from the PURE Study. | Shupler M, Hystad P, Gustafson P, Rangarajan S, Mushtaha M, Jayachtria KG, Mony PK, Mohan D, Kumar P, Lakshmi P, Sagar V, Gupta R, Mohan I, Nair S, Varma RP, Li W, Hu B, You K, Ncube T, Ncube B, Chifamba J, West N, Yeates K, Iqbal R, Khawaja R, Yusuf R, Khan A, Seron P, Lanas F, Lopez-Jaramillo P, Camacho PA, Puoane T, Yusuf S, Brauer M | Environmental research letters : ERL [Web site] | 33777170 | Environ Res Lett | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33777170 |
| Workflow for Comparison of Chemical and Biological Metrics of Filter Collected PM(2.5). | Roper C, Perez A, Barrett D, Hystad P, Massey Simonich SL, Tanguay RL | Atmospheric environment (Oxford, England : 1994) | 32313426 | Atmos Environ (1994) | 2020 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/32313426 |
| Long-term exposure to outdoor and household air pollution and blood pressure in the Prospective Urban and Rural Epidemiological (PURE) study. | Arku RE, Brauer M, Ahmed SH, AlHabib KF, Avezum Á, Bo J, Choudhury T, Dans AM, Gupta R, Iqbal R, Ismail N, Kelishadi R, Khatib R, Koon T, Kumar R, Lanas F, Lear SA, Wei L, Lopez-Jaramillo P, Mohan V, Poirier P, Puoane T, Rangarajan S, Rosengren A, Soman B, Caklili OT, Yang S, Yeates K, Yin L, Yusoff K, Zatoński T, Yusuf S, Hystad P | Environmental pollution (Barking, Essex : 1987) | 32146361 | Environ Pollut | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32146361 |
| Air pollution health impacts: the knowns and unknowns for reliable global burden calculations. | Hystad P, Yusuf S, Brauer M | Cardiovascular research | 32267925 | Cardiovasc Res | 2020 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/32267925 |
| Health Effects of Household Solid Fuel Use: Findings from 11 Countries within the Prospective Urban and Rural Epidemiology Study. | Hystad P, Duong M, Brauer M, Larkin A, Arku R, Kurmi OP, Fan WQ, Avezum A, Azam I, Chifamba J, Dans A, du Plessis JL, Gupta R, Kumar R, Lanas F, Liu Z, Lu Y, Lopez-Jaramillo P, Mony P, Mohan V, Mohan D, Nair S, Puoane T, Rahman O, Lap AT, Wang Y, Wei L, Yeates K, Rangarajan S, Teo K, Yusuf S, [on behalf of Prospective Urban and Rural Epidemiological (PURE) Study investigators] | Environmental health perspectives | 31067132 | Environ Health Perspect | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/31067132 |
| Multinational prediction of household and personal exposure to fine particulate matter (PM(2.5)) in the PURE cohort study. | Shupler M, Hystad P, Birch A, Chu YL, Jeronimo M, Miller-Lionberg D, Gustafson P, Rangarajan S, Mustaha M, Heenan L, Seron P, Lanas F, Cazor F, Jose Oliveros M, Lopez-Jaramillo P, Camacho PA, Otero J, Perez M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Liu Z, Wu S, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, PURE-AIR study investigators | Environment international | 34915352 | Environ Int | 2022 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/34915352 |
| Personal and household PM(2.5) and black carbon exposure measures and respiratory symptoms in 8 low- and middle-income countries. | Wang Y, Shupler M, Birch A, Chu YL, Jeronimo M, Rangarajan S, Mustaha M, Heenan L, Seron P, Saavedra N, Oliveros MJ, Lopez-Jaramillo P, Camacho PA, Otero J, Perez-Mayorga M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Liu Z, Cheng X, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, Hystad P, PURE-AIR study investigators | Environmental research | 35526584 | Environ Res | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35526584 |
| Household and personal air pollution exposure measurements from 120 communities in eight countries: results from the PURE-AIR study. | Shupler M, Hystad P, Birch A, Miller-Lionberg D, Jeronimo M, Arku RE, Chu YL, Mushtaha M, Heenan L, Rangarajan S, Seron P, Lanas F, Cazor F, Lopez-Jaramillo P, Camacho PA, Perez M, Yeates K, West N, Ncube T, Ncube B, Chifamba J, Yusuf R, Khan A, Hu B, Liu X, Wei L, Tse LA, Mohan D, Kumar P, Gupta R, Mohan I, Jayachitra KG, Mony PK, Rammohan K, Nair S, Lakshmi PVM, Sagar V, Khawaja R, Iqbal R, Kazmi K, Yusuf S, Brauer M, PURE-AIR study | The Lancet. Planetary health | 33038319 | Lancet Planet Health | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33038319 |
| Adverse health impacts of cooking with kerosene: A multi-country analysis within the Prospective Urban and Rural Epidemiology Study. | Arku RE, Brauer M, Duong M, Wei L, Hu B, Ah Tse L, Mony PK, Lakshmi PVM, Pillai RK, Mohan V, Yeates K, Kruger L, Rangarajan S, Koon T, Yusuf S, Hystad P, PURE (Prospective Urban and Rural Epidemiological) Study investigators | Environmental research | 32798956 | Environ Res | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32798956 |
| Relationships between Changes in Urban Characteristics and Air Quality in East Asia from 2000 to 2010. | Larkin A, van Donkelaar A, Geddes JA, Martin RV, Hystad P | Environmental science & technology | 27442110 | Environ Sci Technol | 2016 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/27442110 |
| Towards Personal Exposures: How Technology Is Changing Air Pollution and Health Research. | Larkin A, Hystad P | Current environmental health reports | 28983874 | Curr Environ Health Rep | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28983874 |
| Analysis of black carbon on filters by image-based reflectance. | Jeronimo M, Stewart Q, Weakley AT, Giacomo J, Zhang X, Hyslop N, Dillner AM, Shupler M, Brauer M | Atmospheric environment (Oxford, England : 1994) | 32095102 | Atmos Environ (1994) | 2020 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/32095102 |
| Household Air Pollution and Adult Lung Function Change, Respiratory Disease, and Mortality across Eleven Low- and Middle-Income Countries from the PURE Study. | Wang Y, Duong M, Brauer M, Rangarajan S, Dans A, Lanas F, Lopez-Jaramillo P, Puoane T, Yeates K, Chifamba J, Yusuf R, Liu Z, Li Y, Tse LA, Mohan D, Gupta R, Nair S, Lakshmi P, Iqbal R, Anto T, Yusuf S, Hystad P | Environmental health perspectives | 37126654 | Environ Health Perspect | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37126654 |
| Successful Scene Encoding in Presymptomatic Early-Onset Alzheimer's Disease. | Quiroz YT, Willment KC, Castrillon G, Muniz M, Lopera F, Budson A, Stern CE | Journal of Alzheimer's disease : JAD | 26401774 | J Alzheimers Dis | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26401774 |
| Validation of the Latin American Spanish version of the face-name associative memory exam in a Colombian Sample. | Vila-Castelar C, Papp KV, Amariglio RE, Torres VL, Baena A, Gomez D, Rendon J, Samaroo A, Lopera F, Rentz DM, Quiroz YT | The Clinical neuropsychologist | 31851865 | Clin Neuropsychol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31851865 |
| Waning locus coeruleus integrity precedes cortical tau accrual in preclinical autosomal dominant Alzheimer's disease. | Jacobs HIL, Becker JA, Kwong K, Munera D, Ramirez-Gomez L, Engels-Domínguez N, Sanchez JS, Vila-Castelar C, Baena A, Sperling RA, Johnson KA, Lopera F, Quiroz YT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35298083 | Alzheimers Dement | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/35298083 |
| Sex differences in cognitive resilience in preclinical autosomal-dominant Alzheimer's disease carriers and non-carriers: Baseline findings from the API ADAD Colombia Trial. | Vila-Castelar C, Tariot PN, Sink KM, Clayton D, Langbaum JB, Thomas RG, Chen Y, Su Y, Chen K, Hu N, Giraldo-Chica M, Tobón C, Acosta-Baena N, Luna E, Londoño M, Ospina P, Tirado V, Muñoz C, Henao E, Bocanegra Y, Alvarez S, Rios-Romenets S, Ghisays V, Goradia D, Lee W, Luo J, Malek-Ahmadi MH, Protas HD, Lopera F, Reiman EM, Quiroz YT, API ADAD Colombia Trial Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35103388 | Alzheimers Dement | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/35103388 |
| PET evidence of preclinical cerebellar amyloid plaque deposition in autosomal dominant Alzheimer's disease-causing Presenilin-1 E280A mutation carriers. | Ghisays V, Lopera F, Goradia DD, Protas HD, Malek-Ahmadi MH, Chen Y, Devadas V, Luo J, Lee W, Baena A, Bocanegra Y, Guzmán-Vélez E, Pardilla-Delgado E, Vila-Castelar C, Fox-Fuller JT, Hu N, Clayton D, Thomas RG, Alvarez S, Espinosa A, Acosta-Baena N, Giraldo MM, Rios-Romenets S, Langbaum JB, Chen K, Su Y, Tariot PN, Quiroz YT, Reiman EM, API ADAD Colombia Trial Group | NeuroImage. Clinical | 34252876 | Neuroimage Clin | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34252876 |
| Association Between Visual Memory and In Vivo Amyloid and Tau Pathology in Preclinical Autosomal Dominant Alzheimer's Disease. | Bocanegra Y, Fox-Fuller JT, Baena A, Guzmán-Vélez E, Vila-Castelar C, Martínez J, Torrico-Teave H, Lopera F, Quiroz YT | Journal of the International Neuropsychological Society : JINS | 32762790 | J Int Neuropsychol Soc | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32762790 |
| APOE Christchurch-mimetic therapeutic antibody reduces APOE-mediated toxicity and tau phosphorylation. | Marino C, Perez-Corredor P, O'Hare M, Heuer A, Chmielewska N, Gordon H, Chandrahas AS, Gonzalez-Buendia L, Delgado-Tirado S, Doan TH, Vanderleest TE, Arevalo-Alquichire S, Obar RA, Ortiz-Cordero C, Villegas A, Sepulveda-Falla D, Kim LA, Lopera F, Mahley R, Huang Y, Quiroz YT, Arboleda-Velasquez JF | Alzheimer's & dementia : the journal of the Alzheimer's Association | 37791598 | Alzheimers Dement | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37791598 |
| Consideration of sex and gender in Alzheimer's disease and related disorders from a global perspective. | Mielke MM, Aggarwal NT, Vila-Castelar C, Agarwal P, Arenaza-Urquijo EM, Brett B, Brugulat-Serrat A, DuBose LE, Eikelboom WS, Flatt J, Foldi NS, Franzen S, Gilsanz P, Li W, McManus AJ, van Lent DM, Milani SA, Shaaban CE, Stites SD, Sundermann E, Suryadevara V, Trani JF, Turner AD, Vonk JMJ, Quiroz YT, Babulal GM, Diversity and Disparity Professional Interest Area Sex and Gender Special Interest Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35394117 | Alzheimers Dement | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35394117 |
| Retinal Imaging Findings in Carriers With PSEN1-Associated Early-Onset Familial Alzheimer Disease Before Onset of Cognitive Symptoms. | Armstrong GW, Kim LA, Vingopoulos F, Park JY, Garg I, Kasetty M, Silverman RF, Zeng R, Douglas VP, Lopera F, Baena A, Giraldo M, Norton D, Cronin-Golomb A, Arboleda-Velasquez JF, Quiroz YT, Miller JB | JAMA ophthalmology | 33180114 | JAMA Ophthalmol | 2021 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/33180114 |
| Visual working memory for semantically related objects in healthy adults. | García-Magariño I, Fox-Fuller JT, Palacios-Navarro G, Baena A, Quiroz YT | Revista de neurologia | 33034365 | Rev Neurol | 2020 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/33034365 |
| Neuroticism Is Associated with Tau Pathology in Cognitively Unimpaired Individuals with Autosomal Dominant Alzheimer's Disease. | Baena A, Bocanegra Y, Torres V, Vila-Castelar C, Guzmán-Vélez E, Fox-Fuller JT, Gatchel JR, Sánchez J, Pluim CF, Ramirez-Gómez L, Martínez J, Pineda D, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 34219716 | J Alzheimers Dis | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34219716 |
| Associations between subregional thalamic volume and brain pathology in autosomal dominant Alzheimer's disease. | Pardilla-Delgado E, Torrico-Teave H, Sanchez JS, Ramirez-Gomez LA, Baena A, Bocanegra Y, Vila-Castelar C, Fox-Fuller JT, Guzmán-Vélez E, Martínez J, Alvarez S, Ochoa-Escudero M, Lopera F, Quiroz YT | Brain communications | 34095834 | Brain Commun | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34095834 |
| Associations between plasma neurofilament light, in vivo brain pathology, and cognition in non-demented individuals with autosomal-dominant Alzheimer's disease. | Guzmán-Vélez E, Zetterberg H, Fox-Fuller JT, Vila-Castelar C, Sanchez JS, Baena A, Garcia-Ospina G, Aguillon D, Pardilla-Delgado E, Gatchel JR, Sperling RA, Johnson K, Reiman EM, Blennow K, Lopera F, Quiroz YT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 33527648 | Alzheimers Dement | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33527648 |
| Subjective Cognitive Decline and its Relation to Verbal Memory and Sex in Cognitively Unimpaired Individuals from a Colombian Cohort with Autosomal-Dominant Alzheimer's Disease. | Martinez JE, Pardilla-Delgado E, Guzmán-Vélez E, Vila-Castelar C, Amariglio R, Gatchel J, Aguirre-Acevedo DC, Bocanegra Y, Baena A, Henao E, Tirado V, Muñoz C, Giraldo-Chica M, Lopera F, Quiroz YT | Journal of the International Neuropsychological Society : JINS | 34187609 | J Int Neuropsychol Soc | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/34187609 |
| Testing the amyloid cascade hypothesis: Prevention trials in autosomal dominant Alzheimer disease. | Levin J, Vöglein J, Quiroz YT, Bateman RJ, Ghisays V, Lopera F, McDade E, Reiman E, Tariot PN, Morris JC | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35212149 | Alzheimers Dement | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35212149 |
| Effect of apolipoprotein genotype and educational attainment on cognitive function in autosomal dominant Alzheimer's disease. | Langella S, Barksdale NG, Vasquez D, Aguillon D, Chen Y, Su Y, Acosta-Baena N, Acosta-Uribe J, Baena AY, Garcia-Ospina G, Giraldo-Chica M, Tirado V, Muñoz C, Ríos-Romenets S, Guzman-Martínez C, Oliveira G, Yang HS, Vila-Castelar C, Pruzin JJ, Ghisays V, Arboleda-Velasquez JF, Kosik KS, Reiman EM, Lopera F, Quiroz YT | Nature communications | 37612284 | Nat Commun | 2023 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/37612284 |
| Longitudinal Association of Depression Symptoms With Cognition and Cortical Amyloid Among Community-Dwelling Older Adults. | Gatchel JR, Rabin JS, Buckley RF, Locascio JJ, Quiroz YT, Yang HS, Vannini P, Amariglio RE, Rentz DM, Properzi M, Donovan NJ, Blacker D, Johnson KA, Sperling RA, Marshall GA, Harvard Aging Brain Study | JAMA network open | 31397865 | JAMA Netw Open | 2019 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/31397865 |
| Association Between Amyloid and Tau Accumulation in Young Adults With Autosomal Dominant Alzheimer Disease. | Quiroz YT, Sperling RA, Norton DJ, Baena A, Arboleda-Velasquez JF, Cosio D, Schultz A, Lapoint M, Guzman-Velez E, Miller JB, Kim LA, Chen K, Tariot PN, Lopera F, Reiman EM, Johnson KA | JAMA neurology | 29435558 | JAMA Neurol | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29435558 |
| Subjective memory complaints in preclinical autosomal dominant Alzheimer disease. | Norton DJ, Amariglio R, Protas H, Chen K, Aguirre-Acevedo DC, Pulsifer B, Castrillon G, Tirado V, Munoz C, Tariot P, Langbaum JB, Reiman EM, Lopera F, Sperling RA, Quiroz YT | Neurology | 28878053 | Neurology | 2017 Oct 3 | https://www.ncbi.nlm.nih.gov/pubmed/28878053 |
| Resistance to autosomal dominant Alzheimer's disease in an APOE3 Christchurch homozygote: a case report. | Arboleda-Velasquez JF, Lopera F, O'Hare M, Delgado-Tirado S, Marino C, Chmielewska N, Saez-Torres KL, Amarnani D, Schultz AP, Sperling RA, Leyton-Cifuentes D, Chen K, Baena A, Aguillon D, Rios-Romenets S, Giraldo M, Guzmán-Vélez E, Norton DJ, Pardilla-Delgado E, Artola A, Sanchez JS, Acosta-Uribe J, Lalli M, Kosik KS, Huentelman MJ, Zetterberg H, Blennow K, Reiman RA, Luo J, Chen Y, Thiyyagura P, Su Y, Jun GR, Naymik M, Gai X, Bootwalla M, Ji J, Shen L, Miller JB, Kim LA, Tariot PN, Johnson KA, Reiman EM, Quiroz YT | Nature medicine | 31686034 | Nat Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31686034 |
| Association of subjective cognitive decline with markers of brain pathology in preclinical autosomal dominant Alzheimer's disease. | Gatchel JR, Lopera F, Norton DJ, Baena A, Guzman-Velez E, Sanchez JS, d'Oleire Uquillas F, Schultz A, Vannini P, Artola A, Amariglio RE, Rentz DM, Tariot PN, Reiman EM, Johnson KA, Sperling RA, Marshall GA, Quiroz YT | Journal of neurology, neurosurgery, and psychiatry | 31874859 | J Neurol Neurosurg Psychiatry | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/31874859 |
| Biological and Cognitive Markers of Presenilin1 E280A Autosomal Dominant Alzheimer's Disease: A Comprehensive Review of the Colombian Kindred. | Fuller JT, Cronin-Golomb A, Gatchel JR, Norton DJ, Guzmán-Vélez E, Jacobs HIL, Hanseeuw B, Pardilla-Delgado E, Artola A, Baena A, Bocanegra Y, Kosik KS, Chen K, Tariot PN, Johnson K, Sperling RA, Reiman EM, Lopera F, Quiroz YT | The journal of prevention of Alzheimer's disease | 30756118 | J Prev Alzheimers Dis | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30756118 |
| Plasma neurofilament light chain in the presenilin 1 E280A autosomal dominant Alzheimer's disease kindred: a cross-sectional and longitudinal cohort study. | Quiroz YT, Zetterberg H, Reiman EM, Chen Y, Su Y, Fox-Fuller JT, Garcia G, Villegas A, Sepulveda-Falla D, Villada M, Arboleda-Velasquez JF, Guzmán-Vélez E, Vila-Castelar C, Gordon BA, Schultz SA, Protas HD, Ghisays V, Giraldo M, Tirado V, Baena A, Munoz C, Rios-Romenets S, Tariot PN, Blennow K, Lopera F | The Lancet. Neurology | 32470423 | Lancet Neurol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32470423 |
| Examining Cognitive Decline Across Black and White Participants in the Harvard Aging Brain Study. | Amariglio RE, Buckley RF, Rabin JS, Papp KV, Quiroz YT, Mormino EC, Sparks KP, Johnson KA, Rentz DM, Sperling RA | Journal of Alzheimer's disease : JAD | 32417775 | J Alzheimers Dis | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32417775 |
| Examining Sex Differences in Markers of Cognition and Neurodegeneration in Autosomal Dominant Alzheimer's Disease: Preliminary Findings from the Colombian Alzheimer's Prevention Initiative Biomarker Study. | Vila-Castelar C, Guzmán-Vélez E, Pardilla-Delgado E, Buckley RF, Bocanegra Y, Baena A, Fox-Fuller JT, Tirado V, Muñoz C, Giraldo M, Acosta-Baena N, Rios-Romenets S, Langbaum JB, Tariot PN, Lopera F, Reiman EM, Quiroz YT | Journal of Alzheimer's disease : JAD | 32925067 | J Alzheimers Dis | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32925067 |
| The Latin American Spanish version of the Face-Name Associative Memory Exam is sensitive to cognitive and pathological changes in preclinical autosomal dominant Alzheimer's disease. | Vila-Castelar C, Muñoz N, Papp KV, Amariglio RE, Baena A, Guzmán-Vélez E, Bocanegra Y, Sanchez JS, Reiman EM, Johnson KA, Sperling RA, Lopera F, Rentz DM, Quiroz YT | Alzheimer's research & therapy | 32912283 | Alzheimers Res Ther | 2020 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/32912283 |
| Memory for Semantically Related Objects Differentiates Cognitively Unimpaired Autosomal Dominant Mutation Carriers from Non-Carrier Family Members. | Fox-Fuller JT, Martinez JE, Baena A, Londono N, Munera D, Noriega D, Vila-Castelar C, Aduen PA, Lopera F, Cronin-Golomb A, Quiroz YT | The journal of prevention of Alzheimer's disease | 36946459 | J Prev Alzheimers Dis | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36946459 |
| Cortical thickness across the lifespan in a Colombian cohort with autosomal-dominant Alzheimer's disease: A cross-sectional study. | Fox-Fuller JT, Torrico-Teave H, d'Oleire Uquillas F, Chen K, Su Y, Chen Y, Brickhouse M, Sanchez JS, Aguero C, Jacobs HIL, Hampton O, Guzmán-Vélez E, Vila-Castelar C, Aguirre-Acevedo DC, Baena A, Artola A, Martinez J, Pluim CF, Alvarez S, Ochoa-Escudero M, Reiman EM, Sperling RA, Lopera F, Johnson KA, Dickerson BC, Quiroz YT | Alzheimer's & dementia (Amsterdam, Netherlands) | 34541287 | Alzheimers Dement (Amst) | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34541287 |
| Brain Imaging and Blood Biomarker Abnormalities in Children With Autosomal Dominant Alzheimer Disease: A Cross-Sectional Study. | Quiroz YT, Schultz AP, Chen K, Protas HD, Brickhouse M, Fleisher AS, Langbaum JB, Thiyyagura P, Fagan AM, Shah AR, Muniz M, Arboleda-Velasquez JF, Munoz C, Garcia G, Acosta-Baena N, Giraldo M, Tirado V, Ramírez DL, Tariot PN, Dickerson BC, Sperling RA, Lopera F, Reiman EM | JAMA neurology | 26121081 | JAMA Neurol | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26121081 |
| Cognitive Decline in a Colombian Kindred With Autosomal Dominant Alzheimer Disease: A Retrospective Cohort Study. | Aguirre-Acevedo DC, Lopera F, Henao E, Tirado V, Muñoz C, Giraldo M, Bangdiwala SI, Reiman EM, Tariot PN, Langbaum JB, Quiroz YT, Jaimes F | JAMA neurology | 26902171 | JAMA Neurol | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/26902171 |
| A Three-Factor Structure of Cognitive Functioning Among Unimpaired Carriers and Non-Carriers of Autosomal-Dominant Alzheimer's Disease. | Guzmán-Vélez E, Jaimes S, Aguirre-Acevedo DC, Norton DJ, Papp KV, Amariglio R, Rentz D, Baena A, Henao E, Tirado V, Muñoz C, Giraldo M, Sperling RA, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 30040714 | J Alzheimers Dis | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30040714 |
| Perspectives on ethnic and racial disparities in Alzheimer's disease and related dementias: Update and areas of immediate need. | Babulal GM, Quiroz YT, Albensi BC, Arenaza-Urquijo E, Astell AJ, Babiloni C, Bahar-Fuchs A, Bell J, Bowman GL, Brickman AM, Chételat G, Ciro C, Cohen AD, Dilworth-Anderson P, Dodge HH, Dreux S, Edland S, Esbensen A, Evered L, Ewers M, Fargo KN, Fortea J, Gonzalez H, Gustafson DR, Head E, Hendrix JA, Hofer SM, Johnson LA, Jutten R, Kilborn K, Lanctôt KL, Manly JJ, Martins RN, Mielke MM, Morris MC, Murray ME, Oh ES, Parra MA, Rissman RA, Roe CM, Santos OA, Scarmeas N, Schneider LS, Schupf N, Sikkes S, Snyder HM, Sohrabi HR, Stern Y, Strydom A, Tang Y, Terrera GM, Teunissen C, Melo van Lent D, Weinborn M, Wesselman L, Wilcock DM, Zetterberg H, O'Bryant SE, International Society to Advance Alzheimer's Research and Treatment, Alzheimer's Association | Alzheimer's & dementia : the journal of the Alzheimer's Association | 30555031 | Alzheimers Dement | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30555031 |
| Associative memory and in vivo brain pathology in asymptomatic presenilin-1 E280A carriers. | Guzmán-Vélez E, Martínez J, Papp K, Baena A, Vila-Castelar C, Artola A, Schultz AP, Bocanegra Y, Sanchez J, Rentz D, Tariot PN, Reiman EM, Sperling R, Johnson KA, Lopera F, Quiroz YT | Neurology | 32611637 | Neurology | 2020 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/32611637 |
| Striatal amyloid is associated with tauopathy and memory decline in familial Alzheimer's disease. | Hanseeuw BJ, Lopera F, Sperling RA, Norton DJ, Guzman-Velez E, Baena A, Pardilla-Delgado E, Schultz AP, Gatchel J, Jin D, Chen K, Reiman EM, Johnson KA, Quiroz YT | Alzheimer's research & therapy | 30717814 | Alzheimers Res Ther | 2019 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/30717814 |
| Genetic origin of a large family with a novel PSEN1 mutation (Ile416Thr). | Ramirez Aguilar L, Acosta-Uribe J, Giraldo MM, Moreno S, Baena A, Alzate D, Cuastumal R, Aguillón D, Madrigal L, Saldarriaga A, Navarro A, Garcia GP, Aguirre-Acevedo DC, Geier EG, Cochran JN, Quiroz YT, Myers RM, Yokoyama JS, Kosik KS, Lopera F | Alzheimer's & dementia : the journal of the Alzheimer's Association | 30745123 | Alzheimers Dement | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30745123 |
| Normative data stratified by age and education for a Spanish neuropsychological test battery: Results from the Colombian Alzheimer's prevention initiative registry. | Torres VL, Vila-Castelar C, Bocanegra Y, Baena A, Guzmán-Vélez E, Aguirre-Acevedo DC, Tirado V, Munoz C, Henao E, Moreno S, Giraldo M, Acosta N, Rios Romenets S, Langbaum JB, Cho W, Reiman EM, Tariot PN, Rosselli M, Quiroz YT, Lopera F | Applied neuropsychology. Adult | 31230490 | Appl Neuropsychol Adult | 2021 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/31230490 |
| Longitudinal amyloid and tau accumulation in autosomal dominant Alzheimer's disease: findings from the Colombia-Boston (COLBOS) biomarker study. | Sanchez JS, Hanseeuw BJ, Lopera F, Sperling RA, Baena A, Bocanegra Y, Aguillon D, Guzmán-Vélez E, Pardilla-Delgado E, Ramirez-Gomez L, Vila-Castelar C, Martinez JE, Fox-Fuller JT, Ramos C, Ochoa-Escudero M, Alvarez S, Jacobs HIL, Schultz AP, Gatchel JR, Becker JA, Katz SR, Mayblyum DV, Price JC, Reiman EM, Johnson KA, Quiroz YT | Alzheimer's research & therapy | 33451357 | Alzheimers Res Ther | 2021 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/33451357 |
| The cortical origin and initial spread of medial temporal tauopathy in Alzheimer's disease assessed with positron emission tomography. | Sanchez JS, Becker JA, Jacobs HIL, Hanseeuw BJ, Jiang S, Schultz AP, Properzi MJ, Katz SR, Beiser A, Satizabal CL, O'Donnell A, DeCarli C, Killiany R, El Fakhri G, Normandin MD, Gómez-Isla T, Quiroz YT, Rentz DM, Sperling RA, Seshadri S, Augustinack J, Price JC, Johnson KA | Science translational medicine | 33472953 | Sci Transl Med | 2021 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/33472953 |
| APOE3 Christchurch modulates β-catenin/Wnt signaling in iPS cell-derived cerebral organoids from Alzheimer's cases. | Perez-Corredor P, Vanderleest TE, Vacano GN, Sanchez JS, Villalba-Moreno ND, Marino C, Krasemann S, Mendivil-Perez MA, Aguillón D, Jiménez-Del-Río M, Baena A, Sepulveda-Falla D, Lopera F, Quiroz YT, Arboleda-Velasquez JF, Mazzarino RC | Frontiers in molecular neuroscience | 38571814 | Front Mol Neurosci | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38571814 |
| Resilience to autosomal dominant Alzheimer's disease in a Reelin-COLBOS heterozygous man. | Lopera F, Marino C, Chandrahas AS, O'Hare M, Villalba-Moreno ND, Aguillon D, Baena A, Sanchez JS, Vila-Castelar C, Ramirez Gomez L, Chmielewska N, Oliveira GM, Littau JL, Hartmann K, Park K, Krasemann S, Glatzel M, Schoemaker D, Gonzalez-Buendia L, Delgado-Tirado S, Arevalo-Alquichire S, Saez-Torres KL, Amarnani D, Kim LA, Mazzarino RC, Gordon H, Bocanegra Y, Villegas A, Gai X, Bootwalla M, Ji J, Shen L, Kosik KS, Su Y, Chen Y, Schultz A, Sperling RA, Johnson K, Reiman EM, Sepulveda-Falla D, Arboleda-Velasquez JF, Quiroz YT | Nature medicine | 37188781 | Nat Med | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/37188781 |
| Global Cardiovascular Risk Profile and Cerebrovascular Abnormalities in Presymptomatic Individuals with CADASIL or Autosomal Dominant Alzheimer's Disease. | Schoemaker D, Velilla-Jimenez L, Zuluaga Y, Baena A, Ospina C, Bocanegra Y, Alvarez S, Ochoa-Escudero M, Guzmán-Vélez E, Martinez J, Lopera F, Arboleda-Velasquez JF, Quiroz YT | Journal of Alzheimer's disease : JAD | 34092645 | J Alzheimers Dis | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34092645 |
| Olfactory Function and Markers of Brain Pathology in Non-Demented Individuals with Autosomal Dominant Alzheimer's Disease. | Ramirez-Gomez L, Albers MW, Baena A, Vila-Castelar C, Fox-Fuller JT, Sanchez J, Jain F, Albers AD, Lopera F, Quiroz YT | Journal of Alzheimer's disease : JAD | 35694921 | J Alzheimers Dis | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/35694921 |
| A public resource of baseline data from the Alzheimer's Prevention Initiative Autosomal-Dominant Alzheimer's Disease Trial. | Reiman EM, Pruzin JJ, Rios-Romenets S, Brown C, Giraldo M, Acosta-Baena N, Tobon C, Hu N, Chen Y, Ghisays V, Enos J, Goradia DD, Lee W, Luo J, Malek-Ahmadi M, Protas H, Thomas RG, Chen K, Su Y, Boker C, Mastroeni D, Alvarez S, Quiroz YT, Langbaum JB, Sink KM, Lopera F, Tariot PN, API ADAD Colombia Trial Group | Alzheimer's & dementia : the journal of the Alzheimer's Association | 36373344 | Alzheimers Dement | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36373344 |
| Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF). | Liu CC, Bosse M, Kong A, Kagel A, Kinders R, Hewitt SM, Varma S, van de Rijn M, Nowak SH, Bendall SC, Angelo M | Laboratory investigation; a journal of technical methods and pathology | 35351966 | Lab Invest | 2022 Jul | https://www.ncbi.nlm.nih.gov/pubmed/35351966 |
| A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging. | Keren L, Bosse M, Marquez D, Angoshtari R, Jain S, Varma S, Yang SR, Kurian A, Van Valen D, West R, Bendall SC, Angelo M | Cell | 30193111 | Cell | 2018 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/30193111 |
| Multiplexed imaging reveals an IFN-γ-driven inflammatory state in nivolumab-associated gastritis. | Ferrian S, Liu CC, McCaffrey EF, Kumar R, Nowicki TS, Dawson DW, Baranski A, Glaspy JA, Ribas A, Bendall SC, Angelo M | Cell reports. Medicine | 34755133 | Cell Rep Med | 2021 Oct 19 | https://www.ncbi.nlm.nih.gov/pubmed/34755133 |
| MAUI (MBI Analysis User Interface)-An image processing pipeline for Multiplexed Mass Based Imaging. | Baranski A, Milo I, Greenbaum S, Oliveria JP, Mrdjen D, Angelo M, Keren L | PLoS computational biology | 33872301 | PLoS Comput Biol | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33872301 |
| Multiplexed Ion Beam Imaging Readout of Single-Cell Immunoblotting. | Lomeli G, Bosse M, Bendall SC, Angelo M, Herr AE | Analytical chemistry | 34106685 | Anal Chem | 2021 Jun 22 | https://www.ncbi.nlm.nih.gov/pubmed/34106685 |
| Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma. | Risom T, Glass DR, Averbukh I, Liu CC, Baranski A, Kagel A, McCaffrey EF, Greenwald NF, Rivero-Gutiérrez B, Strand SH, Varma S, Kong A, Keren L, Srivastava S, Zhu C, Khair Z, Veis DJ, Deschryver K, Vennam S, Maley C, Hwang ES, Marks JR, Bendall SC, Colditz GA, West RB, Angelo M | Cell | 35063072 | Cell | 2022 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/35063072 |
| MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure. | Keren L, Bosse M, Thompson S, Risom T, Vijayaragavan K, McCaffrey E, Marquez D, Angoshtari R, Greenwald NF, Fienberg H, Wang J, Kambham N, Kirkwood D, Nolan G, Montine TJ, Galli SJ, West R, Bendall SC, Angelo M | Science advances | 31633026 | Sci Adv | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31633026 |
| Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning. | Greenwald NF, Miller G, Moen E, Kong A, Kagel A, Dougherty T, Fullaway CC, McIntosh BJ, Leow KX, Schwartz MS, Pavelchek C, Cui S, Camplisson I, Bar-Tal O, Singh J, Fong M, Chaudhry G, Abraham Z, Moseley J, Warshawsky S, Soon E, Greenbaum S, Risom T, Hollmann T, Bendall SC, Keren L, Graf W, Angelo M, Van Valen D | Nature biotechnology | 34795433 | Nat Biotechnol | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/34795433 |
| Epigenetic memory via concordant DNA methylation is inversely correlated to developmental potential of mammalian cells. | Choi M, Genereux DP, Goodson J, Al-Azzawi H, Allain SQ, Simon N, Palasek S, Ware CB, Cavanaugh C, Miller DG, Johnson WC, Sinclair KD, Stöger R, Laird CD | PLoS genetics | 29107996 | PLoS Genet | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/29107996 |
| Learning to learn from data: Using deep adversarial learning to construct optimal statistical procedures. | Luedtke A, Carone M, Simon N, Sofrygin O | Science advances | 32166115 | Sci Adv | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32166115 |
| Survival analysis of DNA mutation motifs with penalized proportional hazards. | Feng J, Shaw DA, Minin VN, Simon N, Matsen FA 4th | The annals of applied statistics | 33214798 | Ann Appl Stat | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33214798 |
| ESTIMATION OF CELL LINEAGE TREES BY MAXIMUM-LIKELIHOOD PHYLOGENETICS. | Feng J, Dewitt WS 3rd, McKenna A, Simon N, Willis AD, Matsen FA 4th | The annals of applied statistics | 35990087 | Ann Appl Stat | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35990087 |
| Inference for multimarker adaptive enrichment trials. | Simon R, Simon N | Statistics in medicine | 28795420 | Stat Med | 2017 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/28795420 |
| Simultaneous detection and estimation of trait associations with genomic phenotypes. | Morrison J, Simon N, Witten D | Biostatistics (Oxford, England) | 27496912 | Biostatistics | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27496912 |
| Convex Modeling of Interactions with Strong Heredity. | Haris A, Witten D, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 28316461 | J Comput Graph Stat | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28316461 |
| A Flexible Framework for Nonparametric Graphical Modeling that Accommodates Machine Learning. | Xiang Y, Simon N | Proceedings of machine learning research | 33415321 | Proc Mach Learn Res | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/33415321 |
| Convex Regression with Interpretable Sharp Partitions. | Petersen A, Simon N, Witten D | Journal of machine learning research : JMLR | 27635120 | J Mach Learn Res | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27635120 |
| Using Bayesian modeling in frequentist adaptive enrichment designs. | Simon N, Simon R | Biostatistics (Oxford, England) | 28520893 | Biostatistics | 2018 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/28520893 |
| Fused Lasso Additive Model. | Petersen A, Witten D, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 28239246 | J Comput Graph Stat | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28239246 |
| Rejoinder to "Nonparametric variable importance assessment using machine learning techniques". | Williamson BD, Gilbert PB, Carone M, Simon N | Biometrics | 33290576 | Biometrics | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33290576 |
| Approval policies for modifications to machine learning-based software as a medical device: A study of bio-creep. | Feng J, Emerson S, Simon N | Biometrics | 32981103 | Biometrics | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32981103 |
| Nonparametric variable importance assessment using machine learning techniques. | Williamson BD, Gilbert PB, Carone M, Simon N | Biometrics | 33043428 | Biometrics | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33043428 |
| A framework for estimating and testing qualitative interactions with applications to predictive biomarkers. | Roth J, Simon N | Biostatistics (Oxford, England) | 28968765 | Biostatistics | 2018 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/28968765 |
| Rank Conditional Coverage and Confidence Intervals in High-Dimensional Problems. | Morrison J, Simon N | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 30740009 | J Comput Graph Stat | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30740009 |
| An online framework for survival analysis: reframing Cox proportional hazards model for large data sets and neural networks. | Tarkhan A, Simon N | Biostatistics (Oxford, England) | 36288541 | Biostatistics | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/36288541 |
| Selective prediction-set models with coverage rate guarantees. | Feng J, Sondhi A, Perry J, Simon N | Biometrics | 34854476 | Biometrics | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34854476 |
| An engineered human Fc domain that behaves like a pH-toggle switch for ultra-long circulation persistence. | Lee CH, Kang TH, Godon O, Watanabe M, Delidakis G, Gillis CM, Sterlin D, Hardy D, Cogné M, Macdonald LE, Murphy AJ, Tu N, Lee J, McDaniel JR, Makowski E, Tessier PM, Meyer AS, Bruhns P, Georgiou G | Nature communications | 31695028 | Nat Commun | 2019 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/31695028 |
| JNK Pathway Activation Modulates Acquired Resistance to EGFR/HER2-Targeted Therapies. | Manole S, Richards EJ, Meyer AS | Cancer research | 27450453 | Cancer Res | 2016 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/27450453 |
| Apoptotic Bodies Elicit Gas6-Mediated Migration of AXL-Expressing Tumor Cells. | Zweemer AJM, French CB, Mesfin J, Gordonov S, Meyer AS, Lauffenburger DA | Molecular cancer research : MCR | 28923840 | Mol Cancer Res | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28923840 |
| Selectivity in subunit composition of Ena/VASP tetramers. | Riquelme DN, Meyer AS, Barzik M, Keating A, Gertler FB | Bioscience reports | 26221026 | Biosci Rep | 2015 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/26221026 |
| Dissecting FcγR Regulation through a Multivalent Binding Model. | Robinett RA, Guan N, Lux A, Biburger M, Nimmerjahn F, Meyer AS | Cell systems | 29960887 | Cell Syst | 2018 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/29960887 |
| Modeling cell-specific dynamics and regulation of the common gamma chain cytokines. | Farhat AM, Weiner AC, Posner C, Kim ZS, Orcutt-Jahns B, Carlson SM, Meyer AS | Cell reports | 33910015 | Cell Rep | 2021 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/33910015 |
| A biomaterial screening approach reveals microenvironmental mechanisms of drug resistance. | Schwartz AD, Barney LE, Jansen LE, Nguyen TV, Hall CL, Meyer AS, Peyton SR | Integrative biology : quantitative biosciences from nano to macro | 29159332 | Integr Biol (Camb) | 2017 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/29159332 |
| Systems Approaches to Cancer Biology. | Archer TC, Fertig EJ, Gosline SJ, Hafner M, Hughes SK, Joughin BA, Meyer AS, Piccolo SR, Shajahan-Haq AN | Cancer research | 27864348 | Cancer Res | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27864348 |
| Systems biology approaches to measure and model phenotypic heterogeneity in cancer. | Meyer AS, Heiser LM | Current opinion in systems biology | 32864511 | Curr Opin Syst Biol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32864511 |
| The AXL Receptor is a Sensor of Ligand Spatial Heterogeneity. | Meyer AS, Zweemer AJ, Lauffenburger DA | Cell systems | 26236777 | Cell Syst | 2015 Jul 29 | https://www.ncbi.nlm.nih.gov/pubmed/26236777 |
| Versatile targeting system for lentiviral vectors involving biotinylated targeting molecules. | Situ K, Chua BA, Bae SY, Meyer AS, Morizono K | Virology | 30290312 | Virology | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30290312 |
| Look who's talking: A comparison of automated and human-generated speaker tags in naturalistic day-long recordings. | Bulgarelli F, Bergelson E | Behavior research methods | 31342467 | Behav Res Methods | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/31342467 |
| From babble to words: Infants' early productions match words and objects in their environment. | Laing C, Bergelson E | Cognitive psychology | 32504852 | Cogn Psychol | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32504852 |
| A thorough evaluation of the Language Environment Analysis (LENA) system. | Cristia A, Lavechin M, Scaff C, Soderstrom M, Rowland C, Räsänen O, Bunce J, Bergelson E | Behavior research methods | 32728916 | Behav Res Methods | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32728916 |
| Analyzing the effect of sibling number on input and output in the first 18 months. | Laing C, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 38183663 | Infancy | 2024 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/38183663 |
| Early child measures outpredict input measures of preschool language skills in U.S. English learners. | Egan-Dailey S, Bergelson E | Developmental psychology | 40638291 | Dev Psychol | 2025 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/40638291 |
| What Do North American Babies Hear? A large-scale cross-corpus analysis. | Bergelson E, Casillas M, Soderstrom M, Seidl A, Warlaumont AS, Amatuni A | Developmental science | 30369005 | Dev Sci | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30369005 |
| Semantic Specificity in One-Year-Olds' Word Comprehension. | Bergelson E, Aslin R | Language learning and development : the official journal of the Society for Language Development | 29200981 | Lang Learn Dev | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29200981 |
| Talker variability shapes early word representations in English-learning 8-month-olds. | Bulgarelli F, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 34997679 | Infancy | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34997679 |
| Everyday language input and production in 1,001 children from six continents. | Bergelson E, Soderstrom M, Schwarz IC, Rowland CF, Ramírez-Esparza N, R Hamrick L, Marklund E, Kalashnikova M, Guez A, Casillas M, Benetti L, Alphen PV, Cristia A | Proceedings of the National Academy of Sciences of the United States of America | 38085754 | Proc Natl Acad Sci U S A | 2023 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/38085754 |
| How adults understand what young children say. | Meylan SC, Foushee R, Wong NH, Bergelson E, Levy RP | Nature human behaviour | 37884678 | Nat Hum Behav | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37884678 |
| Linking acoustic variability in the infants' input to their early word production. | Bulgarelli F, Bergelson E | Developmental science | 38978148 | Dev Sci | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/38978148 |
| HomeBank: An Online Repository of Daylong Child-Centered Audio Recordings. | VanDam M, Warlaumont AS, Bergelson E, Cristia A, Soderstrom M, De Palma P, MacWhinney B | Seminars in speech and language | 27111272 | Semin Speech Lang | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27111272 |
| Mothers' Work Status and 17-month-olds' Productive Vocabulary. | Laing CE, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 30962769 | Infancy | 2019 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/30962769 |
| Young Infants' Word Comprehension Given An Unfamiliar Talker or Altered Pronunciations. | Bergelson E, Swingley D | Child development | 28639708 | Child Dev | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28639708 |
| A Collaborative Approach to Infant Research: Promoting Reproducibility, Best Practices, and Theory-Building. | Frank MC, Bergelson E, Bergmann C, Cristia A, Floccia C, Gervain J, Hamlin JK, Hannon EE, Kline M, Levelt C, Lew-Williams C, Nazzi T, Panneton R, Rabagliati H, Soderstrom M, Sullivan J, Waxman S, Yurovsky D | Infancy : the official journal of the International Society on Infant Studies | 31772509 | Infancy | 2017 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/31772509 |
| Point, walk, talk: Links between three early milestones, from observation and parental report. | Moore C, Dailey S, Garrison H, Amatuni A, Bergelson E | Developmental psychology | 31094558 | Dev Psychol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31094558 |
| Familiarity plays a small role in noun comprehension at 12-18 months. | Garrison H, Baudet G, Breitfeld E, Aberman A, Bergelson E | Infancy : the official journal of the International Society on Infant Studies | 32744800 | Infancy | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32744800 |
| Vocal development in a large-scale crosslinguistic corpus. | Cychosz M, Cristia A, Bergelson E, Casillas M, Baudet G, Warlaumont AS, Scaff C, Yankowitz L, Seidl A | Developmental science | 33497512 | Dev Sci | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33497512 |
| The Comprehension Boost in Early Word Learning: Older Infants Are Better Learners. | Bergelson E | Child development perspectives | 33569084 | Child Dev Perspect | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33569084 |
| Nature and origins of the lexicon in 6-mo-olds. | Bergelson E, Aslin RN | Proceedings of the National Academy of Sciences of the United States of America | 29158399 | Proc Natl Acad Sci U S A | 2017 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/29158399 |
| Quantifying Talker Variability in North-American Infants' Daily Input. | Bulgarelli F, Mielke J, Bergelson E | Cognitive science | 34971003 | Cogn Sci | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34971003 |
| Day by day, hour by hour: Naturalistic language input to infants. | Bergelson E, Amatuni A, Dailey S, Koorathota S, Tor S | Developmental science | 30094888 | Dev Sci | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30094888 |
| Accuracy of the Language Environment Analysis System Segmentation and Metrics: A Systematic Review. | Cristia A, Bulgarelli F, Bergelson E | Journal of speech, language, and hearing research : JSLHR | 32302262 | J Speech Lang Hear Res | 2020 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/32302262 |
| Talker variability is not always the right noise: 14 month olds struggle to learn dissimilar word-object pairs under talker variability conditions. | Bulgarelli F, Bergelson E | Journal of experimental child psychology | 36395621 | J Exp Child Psychol | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36395621 |
| Talking to talkers: Infants' talk status, but not their gender, is related to language input. | Dailey S, Bergelson E | Child development | 36458329 | Child Dev | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36458329 |
| Artificial intelligence-powered 3D analysis of video-based caregiver-child interactions. | Weng Z, Bravo-Sánchez L, Wang Z, Howard C, Xenochristou M, Meister N, Kanazawa A, Milstein A, Bergelson E, Humphreys KL, Sanders LM, Yeung-Levy S | Science advances | 39951536 | Sci Adv | 2025 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/39951536 |
| Does HIV Pre-Exposure Prophylaxis Modify the Effect of Partnership Characteristics on Condom Use? A Cross-Sectional Study of Sexual Partnerships Among Men Who Have Sex with Men in San Francisco, California. | Prescott MR, Hern J, Petersen M, Santos GM | AIDS patient care and STDs | 30932698 | AIDS Patient Care STDS | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30932698 |
| Prevalence and correlates of hazardous alcohol consumption and binge drinking among men who have sex with men (MSM) in San Francisco. | Santos GM, Rowe C, Hern J, Walker JE, Ali A, Ornelaz M, Prescott M, Coffin P, McFarland W, Raymond HF | PloS one | 30118495 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30118495 |
| Pervasive Heavy Alcohol Use and Correlates of Increasing Levels of Binge Drinking among Men Who Have Sex with Men, San Francisco, 2011. | Santos GM, Jin H, Raymond HF | Journal of urban health : bulletin of the New York Academy of Medicine | 25895622 | J Urban Health | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/25895622 |
| Acceptability of pharmacotherapy for hazardous alcohol use among men who have sex with men: Findings from a qualitative study. | Hsiang E, Jennings D, Matheson T, Hern J, Euren J, Santos GM | Addictive behaviors reports | 30258972 | Addict Behav Rep | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30258972 |
| Targeted Oral Naltrexone for Mild to Moderate Alcohol Use Disorder Among Sexual and Gender Minority Men: A Randomized Trial. | Santos GM, Ikeda J, Coffin P, Walker J, Matheson T, Ali A, McLaughlin M, Jain J, Arenander J, Vittinghoff E, Batki S | The American journal of psychiatry | 36285404 | Am J Psychiatry | 2022 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/36285404 |
| Binge drinking concurrent with anal intercourse and condom use among men who have sex with men. | Rowe C, Liou T, Vittinghoff E, Coffin PO, Santos GM | AIDS care | 27241085 | AIDS Care | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27241085 |
| Correlates of high phosphatidylethanol (PEth) levels and their concordance with self-reported heavy alcohol consumption among men who have sex with men who binge drink alcohol. | McLaughlin MF, Jain JP, Ikeda J, Walker JE, Coffin P, Santos GM | Alcoholism, clinical and experimental research | 35722862 | Alcohol Clin Exp Res | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35722862 |
| Syndemic conditions associated with hazardous alcohol consumption among sexual minority men in San Francisco. | Ngo TP, Cuffaro T, Santos GM | Drug and alcohol dependence reports | 39619334 | Drug Alcohol Depend Rep | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39619334 |
| Interest in the Use of Herbal Supplements to Close the Treatment Gap for Hazardous Alcohol Use Among Men Who Have Sex With Men: Secondary Analysis of a Cross-Sectional Study. | Hernandez C, Rowe C, Ikeda J, Arenander J, Santos GM | JMIR formative research | 39471379 | JMIR Form Res | 2024 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/39471379 |
| Social and Behavioral Correlates of Sexually Transmitted Infections among Men who Have Sex with Men who Use Alcohol in the San Francisco Bay Area. | Jain JP, Gyamerah AO, Baguso GN, Dawson-Rose C, Ikeda J, Santos GM | American journal of men's health | 34134567 | Am J Mens Health | 2021 May-Jun | https://www.ncbi.nlm.nih.gov/pubmed/34134567 |
| Correlates of Alcohol-Using Network Size Among Men Who Have Sex with Men in San Francisco, CA. | Garcia A, Rowe C, Turner C, Santos GM | American journal of men's health | 33899602 | Am J Mens Health | 2021 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/33899602 |
| Within-week associations between alcohol and other substance use and interaction with naltrexone among sexual and gender minority men in San Francisco, California, USA. | Turner CM, Schmitz JM, Ikeda J, Santos GM | Addiction (Abingdon, England) | 40204626 | Addiction | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40204626 |
| Racial/Ethnic Disparities in Club Drug Use, Situational Club Drug Use during Sex, and Sexual Risk Behaviors among Alcohol-Using Men Who Have Sex with Men (MSM) in San Francisco. | Santos GM, Hernandez C, Lam E, Hern J, Rowe C | Substance use & misuse | 38307836 | Subst Use Misuse | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38307836 |
| Reg1 and Snf1 regulate stress-induced relocalization of protein phosphatase-1 to cytoplasmic granules. | Schnell HM, Jochem M, Micoogullari Y, Riggs CL, Ivanov P, Welsch H, Ravindran R, Anderson P, Robinson LC, Tatchell K, Hanna J | The FEBS journal | 33682330 | FEBS J | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33682330 |
| Yeast PI31 inhibits the proteasome by a direct multisite mechanism. | Rawson S, Walsh RM Jr, Velez B, Schnell HM, Jiao F, Blickling M, Ang J, Bhanu MK, Huang L, Hanna J | Nature structural & molecular biology | 35927584 | Nat Struct Mol Biol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35927584 |
| Regulation of the unfolded protein response in yeast by oxidative stress. | Guerra-Moreno A, Ang J, Welsch H, Jochem M, Hanna J | FEBS letters | 31002390 | FEBS Lett | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/31002390 |
| Tmc1 Is a Dynamically Regulated Effector of the Rpn4 Proteotoxic Stress Response. | Guerra-Moreno A, Hanna J | The Journal of biological chemistry | 27226598 | J Biol Chem | 2016 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/27226598 |
| Phospholipase Lpl1 links lipid droplet function with quality control protein degradation. | Weisshaar N, Welsch H, Guerra-Moreno A, Hanna J | Molecular biology of the cell | 28100635 | Mol Biol Cell | 2017 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/28100635 |
| Induction of proteotoxic stress by the mycotoxin patulin. | Guerra-Moreno A, Hanna J | Toxicology letters | 28529145 | Toxicol Lett | 2017 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/28529145 |
| Dysregulation of very-long-chain fatty acid metabolism causes membrane saturation and induction of the unfolded protein response. | Micoogullari Y, Basu SS, Ang J, Weisshaar N, Schmitt ND, Abdelmoula WM, Lopez B, Agar JN, Agar N, Hanna J | Molecular biology of the cell | 31746669 | Mol Biol Cell | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31746669 |
| Targeted Degradation of Glucose Transporters Protects against Arsenic Toxicity. | Jochem M, Ende L, Isasa M, Ang J, Schnell H, Guerra-Moreno A, Micoogullari Y, Bhanu M, Gygi SP, Hanna J | Molecular and cellular biology | 30886123 | Mol Cell Biol | 2019 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/30886123 |
| Structures of chaperone-associated assembly intermediates reveal coordinated mechanisms of proteasome biogenesis. | Schnell HM, Walsh RM Jr, Rawson S, Kaur M, Bhanu MK, Tian G, Prado MA, Guerra-Moreno A, Paulo JA, Gygi SP, Roelofs J, Finley D, Hanna J | Nature structural & molecular biology | 33846632 | Nat Struct Mol Biol | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33846632 |
| Solution Structure of the Cuz1 AN1 Zinc Finger Domain: An Exposed LDFLP Motif Defines a Subfamily of AN1 Proteins. | Sun ZJ, Bhanu MK, Allan MG, Arthanari H, Wagner G, Hanna J | PloS one | 27662200 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27662200 |
| Protein Degradation and the Pathologic Basis of Disease. | Hanna J, Guerra-Moreno A, Ang J, Micoogullari Y | The American journal of pathology | 30312581 | Am J Pathol | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30312581 |
| Mechanism of proteasome gate modulation by assembly chaperones Pba1 and Pba2. | Schnell HM, Ang J, Rawson S, Walsh RM Jr, Micoogullari Y, Hanna J | The Journal of biological chemistry | 35398095 | J Biol Chem | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35398095 |
| Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response. | Guerra-Moreno A, Isasa M, Bhanu MK, Waterman DP, Eapen VV, Gygi SP, Hanna J | The Journal of biological chemistry | 26491016 | J Biol Chem | 2015 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/26491016 |
| Thiol-based direct threat sensing by the stress-activated protein kinase Hog1. | Guerra-Moreno A, Prado MA, Ang J, Schnell HM, Micoogullari Y, Paulo JA, Finley D, Gygi SP, Hanna J | Science signaling | 31772124 | Sci Signal | 2019 Nov 26 | https://www.ncbi.nlm.nih.gov/pubmed/31772124 |
| Potentiating aminoglycoside antibiotics to reduce their toxic side effects. | Rosenberg CR, Fang X, Allison KR | PloS one | 32877437 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32877437 |
| Resuscitation dynamics reveal persister partitioning after antibiotic treatment. | Fang X, Allison KR | Molecular systems biology | 36866643 | Mol Syst Biol | 2023 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/36866643 |
| Escherichia coli self-organizes developmental rosettes. | Puri D, Allison KR | Proceedings of the National Academy of Sciences of the United States of America | 38814871 | Proc Natl Acad Sci U S A | 2024 Jun 4 | https://www.ncbi.nlm.nih.gov/pubmed/38814871 |
| Bi-allelic Loss of CDKN2A Initiates Melanoma Invasion via BRN2 Activation. | Zeng H, Jorapur A, Shain AH, Lang UE, Torres R, Zhang Y, McNeal AS, Botton T, Lin J, Donne M, Bastian IN, Yu R, North JP, Pincus L, Ruben BS, Joseph NM, Yeh I, Bastian BC, Judson RL | Cancer cell | 29990501 | Cancer Cell | 2018 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/29990501 |
| Evaluation of holographic imaging cytometer holomonitor M4® motility applications. | Zhang Y, Judson RL | Cytometry. Part A : the journal of the International Society for Analytical Cytology | 30343513 | Cytometry A | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/30343513 |
| BRAF(V600E) induces reversible mitotic arrest in human melanocytes via microrna-mediated suppression of AURKB. | McNeal AS, Belote RL, Zeng H, Urquijo M, Barker K, Torres R, Curtin M, Shain AH, Andtbacka RH, Holmen S, Lum DH, McCalmont TH, VanBrocklin MW, Grossman D, Wei ML, Lang UE, Judson-Torres RL | eLife | 34812139 | Elife | 2021 Nov 23 | https://www.ncbi.nlm.nih.gov/pubmed/34812139 |
| MicroRNA Ratios Distinguish Melanomas from Nevi. | Torres R, Lang UE, Hejna M, Shelton SJ, Joseph NM, Shain AH, Yeh I, Wei ML, Oldham MC, Bastian BC, Judson-Torres RL | The Journal of investigative dermatology | 31580842 | J Invest Dermatol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31580842 |
| High accuracy label-free classification of single-cell kinetic states from holographic cytometry of human melanoma cells. | Hejna M, Jorapur A, Song JS, Judson RL | Scientific reports | 28931937 | Sci Rep | 2017 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/28931937 |
| The genomic landscapes of individual melanocytes from human skin. | Tang J, Fewings E, Chang D, Zeng H, Liu S, Jorapur A, Belote RL, McNeal AS, Tan TM, Yeh I, Arron ST, Judson-Torres RL, Bastian BC, Shain AH | Nature | 33029006 | Nature | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/33029006 |
| Serial Immunoprecipitation of 3xFLAG/V5-tagged Yeast Proteins to Identify Specific Interactions with Chaperone Proteins. | Zheng X, Pincus D | Bio-protocol | 29104895 | Bio Protoc | 2017 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/29104895 |
| Blue light receptor CRY1 regulates HSFA1d nuclear localization to promote plant thermotolerance. | Gao J, Zhang R, Zheng L, Song L, Ji M, Li S, Wang J, Yang J, Kang G, Zhang P, Shi Y, Jiao Y, Pincus D, Zheng X | Cell reports | 37703177 | Cell Rep | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37703177 |
| Multi-kinase control of environmental stress responsive transcription. | Mace K, Krakowiak J, El-Samad H, Pincus D | PloS one | 32160258 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32160258 |
| m(6)A modification of a 3' UTR site reduces RME1 mRNA levels to promote meiosis. | Bushkin GG, Pincus D, Morgan JT, Richardson K, Lewis C, Chan SH, Bartel DP, Fink GR | Nature communications | 31363087 | Nat Commun | 2019 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/31363087 |
| Persistent Activation of mRNA Translation by Transient Hsp90 Inhibition. | Tsvetkov P, Eisen TJ, Heinrich SU, Brune Z, Hallacli E, Newby GA, Kayatekin C, Pincus D, Lindquist S | Cell reports | 32783929 | Cell Rep | 2020 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/32783929 |
| Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation. | Zheng X, Krakowiak J, Patel N, Beyzavi A, Ezike J, Khalil AS, Pincus D | eLife | 27831465 | Elife | 2016 Nov 10 | https://www.ncbi.nlm.nih.gov/pubmed/27831465 |
| Engineering allosteric regulation in protein kinases. | Pincus D, Pandey JP, Feder ZA, Creixell P, Resnekov O, Reynolds KA | Science signaling | 30401787 | Sci Signal | 2018 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/30401787 |
| Delayed Ras/PKA signaling augments the unfolded protein response. | Pincus D, Aranda-Díaz A, Zuleta IA, Walter P, El-Samad H | Proceedings of the National Academy of Sciences of the United States of America | 25275008 | Proc Natl Acad Sci U S A | 2014 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/25275008 |
| Lipidomic Analysis of α-Synuclein Neurotoxicity Identifies Stearoyl CoA Desaturase as a Target for Parkinson Treatment. | Fanning S, Haque A, Imberdis T, Baru V, Barrasa MI, Nuber S, Termine D, Ramalingam N, Ho GPH, Noble T, Sandoe J, Lou Y, Landgraf D, Freyzon Y, Newby G, Soldner F, Terry-Kantor E, Kim TE, Hofbauer HF, Becuwe M, Jaenisch R, Pincus D, Clish CB, Walther TC, Farese RV Jr, Srinivasan S, Welte MA, Kohlwein SD, Dettmer U, Lindquist S, Selkoe D | Molecular cell | 30527540 | Mol Cell | 2019 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/30527540 |
| Heat Shock Factor 1 Drives Intergenic Association of Its Target Gene Loci upon Heat Shock. | Chowdhary S, Kainth AS, Pincus D, Gross DS | Cell reports | 30605674 | Cell Rep | 2019 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/30605674 |
| Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity. | Kayatekin C, Amasino A, Gaglia G, Flannick J, Bonner JM, Fanning S, Narayan P, Barrasa MI, Pincus D, Landgraf D, Nelson J, Hesse WR, Costanzo M, AMP T2D-GENES Consortium, Myers CL, Boone C, Florez JC, Lindquist S | Cell | 29526462 | Cell | 2018 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/29526462 |
| Chaperone AMPylation modulates aggregation and toxicity of neurodegenerative disease-associated polypeptides. | Truttmann MC, Pincus D, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 29760078 | Proc Natl Acad Sci U S A | 2018 May 29 | https://www.ncbi.nlm.nih.gov/pubmed/29760078 |
| Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis. | Solís EJ, Pandey JP, Zheng X, Jin DX, Gupta PB, Airoldi EM, Pincus D, Denic V | Molecular cell | 27320198 | Mol Cell | 2016 Jul 7 | https://www.ncbi.nlm.nih.gov/pubmed/27320198 |
| Size doesn't matter in the heat shock response. | Pincus D | Current genetics | 27502399 | Curr Genet | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/27502399 |
| An evolution-based strategy for engineering allosteric regulation. | Pincus D, Resnekov O, Reynolds KA | Physical biology | 28266924 | Phys Biol | 2017 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/28266924 |
| Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome. | Pincus D, Anandhakumar J, Thiru P, Guertin MJ, Erkine AM, Gross DS | Molecular biology of the cell | 30332327 | Mol Biol Cell | 2018 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/30332327 |
| Unrestrained AMPylation targets cytosolic chaperones and activates the heat shock response. | Truttmann MC, Zheng X, Hanke L, Damon JR, Grootveld M, Krakowiak J, Pincus D, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 28031489 | Proc Natl Acad Sci U S A | 2017 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/28031489 |
| Subcellular localization of the J-protein Sis1 regulates the heat shock response. | Feder ZA, Ali A, Singh A, Krakowiak J, Zheng X, Bindokas VP, Wolfgeher D, Kron SJ, Pincus D | The Journal of cell biology | 33326013 | J Cell Biol | 2021 Jan 4 | https://www.ncbi.nlm.nih.gov/pubmed/33326013 |
| Hsf1 Phosphorylation Generates Cell-to-Cell Variation in Hsp90 Levels and Promotes Phenotypic Plasticity. | Zheng X, Beyzavi A, Krakowiak J, Patel N, Khalil AS, Pincus D | Cell reports | 29562166 | Cell Rep | 2018 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/29562166 |
| Specificity in endoplasmic reticulum-stress signaling in yeast entails a step-wise engagement of HAC1 mRNA to clusters of the stress sensor Ire1. | van Anken E, Pincus D, Coyle S, Aragón T, Osman C, Lari F, Gómez Puerta S, Korennykh AV, Walter P | eLife | 25549299 | Elife | 2014 Dec 30 | https://www.ncbi.nlm.nih.gov/pubmed/25549299 |
| Hsf1 and Hsp70 constitute a two-component feedback loop that regulates the yeast heat shock response. | Krakowiak J, Zheng X, Patel N, Feder ZA, Anandhakumar J, Valerius K, Gross DS, Khalil AS, Pincus D | eLife | 29393852 | Elife | 2018 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/29393852 |
| Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis. | Solís EJ, Pandey JP, Zheng X, Jin DX, Gupta PB, Airoldi EM, Pincus D, Denic V | Molecular cell | 29395071 | Mol Cell | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29395071 |
| Hierarchical Organization Endows the Kinase Domain with Regulatory Plasticity. | Creixell P, Pandey JP, Palmeri A, Bhattacharyya M, Creixell M, Ranganathan R, Pincus D, Yaffe MB | Cell systems | 30243563 | Cell Syst | 2018 Oct 24 | https://www.ncbi.nlm.nih.gov/pubmed/30243563 |
| tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae. | Damon JR, Pincus D, Ploegh HL | Molecular biology of the cell | 25392298 | Mol Biol Cell | 2015 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/25392298 |
| 3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry. | Velez DO, Tsui B, Goshia T, Chute CL, Han A, Carter H, Fraley SI | Nature communications | 29162797 | Nat Commun | 2017 Nov 21 | https://www.ncbi.nlm.nih.gov/pubmed/29162797 |
| Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response. | Zhang P, Kitchen-Smith I, Xiong L, Stracquadanio G, Brown K, Richter PH, Wallace MD, Bond E, Sahgal N, Moore S, Nornes S, De Val S, Surakhy M, Sims D, Wang X, Bell DA, Zeron-Medina J, Jiang Y, Ryan AJ, Selfe JL, Shipley J, Kar S, Pharoah PD, Loveday C, Jansen R, Grochola LF, Palles C, Protheroe A, Millar V, Ebner DV, Pagadala M, Blagden SP, Maughan TS, Domingo E, Tomlinson I, Turnbull C, Carter H, Bond GL | Cancer research | 33558336 | Cancer Res | 2021 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/33558336 |
| Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. | Zhou Y, Bastian IN, Long MD, Dow M, Li W, Liu T, Ngu RK, Antonucci L, Huang JY, Phung QT, Zhao XH, Banerjee S, Lin XJ, Wang H, Dang B, Choi S, Karin D, Su H, Ellisman MH, Jamieson C, Bosenberg M, Cheng Z, Haybaeck J, Kenner L, Fisch KM, Bourgon R, Hernandez G, Lill JR, Liu S, Carter H, Mellman I, Karin M, Shalapour S | Proceedings of the National Academy of Sciences of the United States of America | 33602823 | Proc Natl Acad Sci U S A | 2021 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/33602823 |
| Evolutionary Pressure against MHC Class II Binding Cancer Mutations. | Marty Pyke R, Thompson WK, Salem RM, Font-Burgada J, Zanetti M, Carter H | Cell | 30245014 | Cell | 2018 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/30245014 |
| Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls. | Buckley AR, Standish KA, Bhutani K, Ideker T, Lasken RS, Carter H, Harismendy O, Schork NJ | BMC genomics | 28606096 | BMC Genomics | 2017 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/28606096 |
| Common genetic variation in the germline influences where and how tumors develop. | Carter H, Ideker T | Molecular & cellular oncology | 28616579 | Mol Cell Oncol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28616579 |
| Identifying mutation specific cancer pathways using a structurally resolved protein interaction network. | Engin HB, Hofree M, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 25592571 | Pac Symp Biocomput | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25592571 |
| Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss. | Gross AM, Orosco RK, Shen JP, Egloff AM, Carter H, Hofree M, Choueiri M, Coffey CS, Lippman SM, Hayes DN, Cohen EE, Grandis JR, Nguyen QT, Ideker T | Nature genetics | 25086664 | Nat Genet | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25086664 |
| Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes. | Castro A, Ozturk K, Pyke RM, Xian S, Zanetti M, Carter H | BMC medical genomics | 31345234 | BMC Med Genomics | 2019 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/31345234 |
| The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine. | Ozturk K, Dow M, Carlin DE, Bejar R, Carter H | Journal of molecular biology | 29908887 | J Mol Biol | 2018 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/29908887 |
| Extracting allelic read counts from 250,000 human sequencing runs in Sequence Read Archive. | Tsui B, Dow M, Skola D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864322 | Pac Symp Biocomput | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30864322 |
| Modeling of RAS complexes supports roles in cancer for less studied partners. | Engin HB, Carlin D, Pratt D, Carter H | BMC biophysics | 28815022 | BMC Biophys | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28815022 |
| Challenges in identifying cancer genes by analysis of exome sequencing data. | Hofree M, Carter H, Kreisberg JF, Bandyopadhyay S, Mischel PS, Friend S, Ideker T | Nature communications | 27417679 | Nat Commun | 2016 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/27417679 |
| Integrating molecular networks with genetic variant interpretation for precision medicine. | Capriotti E, Ozturk K, Carter H | Wiley interdisciplinary reviews. Systems biology and medicine | 30548534 | Wiley Interdiscip Rev Syst Biol Med | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30548534 |
| MHC-I genotype drives early immune selection of oncogenic mutations. | Marty R, de Prisco N, Carter H, Font-Burgada J | Molecular & cellular oncology | 29487895 | Mol Cell Oncol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29487895 |
| Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival. | Pyke RM, Genolet R, Harari A, Coukos G, Gfeller D, Carter H | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 30864318 | Pac Symp Biocomput | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30864318 |
| MHC-I Genotype Restricts the Oncogenic Mutational Landscape. | Marty R, Kaabinejadian S, Rossell D, Slifker MJ, van de Haar J, Engin HB, de Prisco N, Ideker T, Hildebrand WH, Font-Burgada J, Carter H | Cell | 29107334 | Cell | 2017 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/29107334 |
| IRE1α regulates macrophage polarization, PD-L1 expression, and tumor survival. | Batista A, Rodvold JJ, Xian S, Searles SC, Lew A, Iwawaki T, Almanza G, Waller TC, Lin J, Jepsen K, Carter H, Zanetti M | PLoS biology | 32520957 | PLoS Biol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32520957 |
| MHC-I genotype and tumor mutational burden predict response to immunotherapy. | Goodman AM, Castro A, Pyke RM, Okamura R, Kato S, Riviere P, Frampton G, Sokol E, Zhang X, Ball ED, Carter H, Kurzrock R | Genome medicine | 32430031 | Genome Med | 2020 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/32430031 |
| A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. | Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T | Nature genetics | 29610481 | Nat Genet | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29610481 |
| Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. | Klie A, Tsui BY, Mollah S, Skola D, Dow M, Hsu CN, Carter H | Database : the journal of biological databases and curation | 33914028 | Database (Oxford) | 2021 Apr 29 | https://www.ncbi.nlm.nih.gov/pubmed/33914028 |
| Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. | Carter H, Marty R, Hofree M, Gross AM, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo GW, Gutkind JS, Ideker T | Cancer discovery | 28188128 | Cancer Discov | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28188128 |
| Structure-Based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces. | Engin HB, Kreisberg JF, Carter H | PloS one | 27043210 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27043210 |
| Identifying Driver Interfaces Enriched for Somatic Missense Mutations in Tumors. | Ozturk K, Carter H | Methods in molecular biology (Clifton, N.J.) | 30542990 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30542990 |
| Integrative genomic analysis of mouse and human hepatocellular carcinoma. | Dow M, Pyke RM, Tsui BY, Alexandrov LB, Nakagawa H, Taniguchi K, Seki E, Harismendy O, Shalapour S, Karin M, Carter H, Font-Burgada J | Proceedings of the National Academy of Sciences of the United States of America | 30287485 | Proc Natl Acad Sci U S A | 2018 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/30287485 |
| Immune DNA signature of T-cell infiltration in breast tumor exomes. | Levy E, Marty R, Gárate Calderón V, Woo B, Dow M, Armisen R, Carter H, Harismendy O | Scientific reports | 27452728 | Sci Rep | 2016 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/27452728 |
| Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment. | Wang T, Tsui B, Kreisberg JF, Robertson NA, Gross AM, Yu MK, Carter H, Brown-Borg HM, Adams PD, Ideker T | Genome biology | 28351423 | Genome Biol | 2017 Mar 28 | https://www.ncbi.nlm.nih.gov/pubmed/28351423 |
| The RUNX1-ETO target gene RASSF2 suppresses t(8;21) AML development and regulates Rac GTPase signaling. | Stoner SA, Liu KTH, Andrews ET, Liu M, Arimoto KI, Yan M, Davis AG, Weng S, Dow M, Xian S, DeKelver RC, Carter H, Zhang DE | Blood cancer journal | 32029705 | Blood Cancer J | 2020 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/32029705 |
| Predicting functional consequences of mutations using molecular interaction network features. | Ozturk K, Carter H | Human genetics | 34432150 | Hum Genet | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34432150 |
| Intestinal serotonin and fluoxetine exposure modulate bacterial colonization in the gut. | Fung TC, Vuong HE, Luna CDG, Pronovost GN, Aleksandrova AA, Riley NG, Vavilina A, McGinn J, Rendon T, Forrest LR, Hsiao EY | Nature microbiology | 31477894 | Nat Microbiol | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31477894 |
| The Microbiome as a Modifier of Neurodegenerative Disease Risk. | Fang P, Kazmi SA, Jameson KG, Hsiao EY | Cell host & microbe | 32791113 | Cell Host Microbe | 2020 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/32791113 |
| The Microbial Olympics 2016. | Nelson MB, Chase AB, Martiny JB, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, Ackermann M, Smillie C, Chien D, Alm E, Jermy AJ | Nature microbiology | 27573121 | Nat Microbiol | 2016 Jul 26 | https://www.ncbi.nlm.nih.gov/pubmed/27573121 |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 30007420 | Cell | 2018 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/30007420 |
| Defining Dysbiosis in Disorders of Movement and Motivation. | Fields CT, Sampson TR, Bruce-Keller AJ, Kiraly DD, Hsiao EY, de Vries GJ | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30381433 | J Neurosci | 2018 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/30381433 |
| The Microbiome and Host Behavior. | Vuong HE, Yano JM, Fung TC, Hsiao EY | Annual review of neuroscience | 28301775 | Annu Rev Neurosci | 2017 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/28301775 |
| Emerging Roles for the Gut Microbiome in Autism Spectrum Disorder. | Vuong HE, Hsiao EY | Biological psychiatry | 27773355 | Biol Psychiatry | 2017 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/27773355 |
| The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. | Olson CA, Vuong HE, Yano JM, Liang QY, Nusbaum DJ, Hsiao EY | Cell | 29804833 | Cell | 2018 Jun 14 | https://www.ncbi.nlm.nih.gov/pubmed/29804833 |
| Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis. | Yano JM, Yu K, Donaldson GP, Shastri GG, Ann P, Ma L, Nagler CR, Ismagilov RF, Mazmanian SK, Hsiao EY | Cell | 25860609 | Cell | 2015 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/25860609 |
| Interactions between the microbiota, immune and nervous systems in health and disease. | Fung TC, Olson CA, Hsiao EY | Nature neuroscience | 28092661 | Nat Neurosci | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/28092661 |
| Food Insecure College Students and Objective Measurements of Their Unused Meal Plans. | van Woerden I, Hruschka D, Vega-Lόpez S, Schaefer DR, Adams M, Bruening M | Nutrients | 31018554 | Nutrients | 2019 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/31018554 |
| Young adults' BMI and changes in romantic relationship status during the first semester of college. | van Woerden I, Brewis A, Hruschka D, Dunton G, Adams MA, Bruening M | PloS one | 32214397 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32214397 |
| Finding and Keeping Friends in College and Their Influence on Alcohol Use: A Network Analysis. | Schaefer DR, Van Woerden I, Hruschka D, Bruening M | Journal of studies on alcohol and drugs | 33573730 | J Stud Alcohol Drugs | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33573730 |
| Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study. | Whisner CM, Maldonado J, Dente B, Krajmalnik-Brown R, Bruening M | BMC microbiology | 30541450 | BMC Microbiol | 2018 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/30541450 |
| The Association among Emotions and Food Choices in First-Year College Students Using mobile-Ecological Momentary Assessments. | Ashurst J, van Woerden I, Dunton G, Todd M, Ohri-Vachaspati P, Swan P, Bruening M | BMC public health | 29716572 | BMC Public Health | 2018 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/29716572 |
| The Struggle Is Real: A Systematic Review of Food Insecurity on Postsecondary Education Campuses. | Bruening M, Argo K, Payne-Sturges D, Laska MN | Journal of the Academy of Nutrition and Dietetics | 28754200 | J Acad Nutr Diet | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28754200 |
| Longitudinal assessment of food insecurity status on the gut microbiome and metabolome of first-year college students. | Mohr AE, Jasbi P, van Woerden I, Bowes DA, Chi J, Gu H, Bruening M, Whisner CM | The British journal of nutrition | 40524571 | Br J Nutr | 2025 Jun 28 | https://www.ncbi.nlm.nih.gov/pubmed/40524571 |
| Evaluating Potential Behavioral Mediators for Increasing Similarity in Friends' Body Size among College Students. | van Woerden I, Hruschka D, Schaefer DR, Fine KL, Bruening M | Nutrients | 31450804 | Nutrients | 2019 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/31450804 |
| Changes in Weight Status and the Intestinal Microbiota Among College Freshman, Aged 18 Years. | Journey EK, Ortega-Santos CP, Bruening M, Whisner CM | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 31477511 | J Adolesc Health | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31477511 |
| Social Mechanisms for Weight-related Behaviors among Emerging Adults. | Bruening M, Huberty J, Skelton K, Brennhofer S, Voytyuk M | Health behavior and policy review | 31867404 | Health Behav Policy Rev | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31867404 |
| Hungry to learn: the prevalence and effects of food insecurity on health behaviors and outcomes over time among a diverse sample of university freshmen. | Bruening M, van Woerden I, Todd M, Laska MN | The international journal of behavioral nutrition and physical activity | 29347963 | Int J Behav Nutr Phys Act | 2018 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/29347963 |
| A Systematic Review of Methods and Procedures Used in Ecological Momentary Assessments of Diet and Physical Activity Research in Youth: An Adapted STROBE Checklist for Reporting EMA Studies (CREMAS). | Liao Y, Skelton K, Dunton G, Bruening M | Journal of medical Internet research | 27328833 | J Med Internet Res | 2016 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/27328833 |
| Gut microbiome diversity, variability, and latent community types compared with shifts in body weight during the freshman year of college in dormitory-housed adolescents. | Mohr AE, Ahern MM, Sears DD, Bruening M, Whisner CM | Gut microbes | 37642346 | Gut Microbes | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37642346 |
| Factors Related to the High Rates of Food Insecurity among Diverse, Urban College Freshmen. | Bruening M, Brennhofer S, van Woerden I, Todd M, Laska M | Journal of the Academy of Nutrition and Dietetics | 27212147 | J Acad Nutr Diet | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27212147 |
| Weight Shame, Social Connection, and Depressive Symptoms in Late Adolescence. | Brewis AA, Bruening M | International journal of environmental research and public health | 29723962 | Int J Environ Res Public Health | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29723962 |
| Association of food insecurity on gut microbiome and metabolome profiles in a diverse college-based sample. | Mohr AE, Jasbi P, Vander Wyst KB, van Woerden I, Shi X, Gu H, Whisner CM, Bruening M | Scientific reports | 35999348 | Sci Rep | 2022 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/35999348 |
| First-year college students' weight change is influenced by their randomly assigned roommates' BMI. | van Woerden I, Hruschka D, Brewis A, Schaefer DR, Bruening M | PloS one | 33232356 | PLoS One | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33232356 |
| Friendship as a social mechanism influencing body mass index (BMI) among emerging adults. | Bruening M, van Woerden I, Schaefer DR, Hruschka D, Brewis A, Whisner CM, Dunton GF, Todd M, Ohri-Vachaspati P, Laska MN | PloS one | 30562375 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30562375 |
| Longitudinal social networks impacts on weight and weight-related behaviors assessed using mobile-based ecological momentary assessments: Study Protocols for the SPARC study. | Bruening M, Ohri-Vachaspati P, Brewis A, Laska M, Todd M, Hruschka D, Schaefer DR, Whisner CM, Dunton G | BMC public health | 27576358 | BMC Public Health | 2016 Aug 30 | https://www.ncbi.nlm.nih.gov/pubmed/27576358 |
| A Mobile Ecological Momentary Assessment Tool (devilSPARC) for Nutrition and Physical Activity Behaviors in College Students: A Validation Study. | Bruening M, van Woerden I, Todd M, Brennhofer S, Laska MN, Dunton G | Journal of medical Internet research | 27465701 | J Med Internet Res | 2016 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/27465701 |
| Weight stigma and eating behaviors on a college campus: Are students immune to stigma's effects? | Brewis A, Brennhofer S, van Woerden I, Bruening M | Preventive medicine reports | 27833844 | Prev Med Rep | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27833844 |
| Similarity in meal plan use among first-year roommates. | van Woerden I, Schaefer DR, Hruschka D, Vega-Lopez S, Adams M, Bruening M | Appetite | 31593746 | Appetite | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/31593746 |
| Microbial Ecology and Metabolism of Emerging Adulthood: Gut Microbiome Insights from a College Freshman Cohort. | Mohr AE, Jasbi P, van Woerden I, Chi J, Gu H, Bruening M, Whisner CM | Gut microbes reports | 39221110 | Gut Microbes Rep | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39221110 |
| Common Neurotransmission Recruited in (R,S)-Ketamine and (2R,6R)-Hydroxynorketamine-Induced Sustained Antidepressant-like Effects. | Pham TH, Defaix C, Xu X, Deng SX, Fabresse N, Alvarez JC, Landry DW, Brachman RA, Denny CA, Gardier AM | Biological psychiatry | 29174592 | Biol Psychiatry | 2018 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/29174592 |
| Sex-specific neurobiological actions of prophylactic (R,S)-ketamine, (2R,6R)-hydroxynorketamine, and (2S,6S)-hydroxynorketamine. | Chen BK, Luna VM, LaGamma CT, Xu X, Deng SX, Suckow RF, Cooper TB, Shah A, Brachman RA, Mendez-David I, David DJ, Gardier AM, Landry DW, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 32417852 | Neuropsychopharmacology | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/32417852 |
| Activation of local inhibitory circuits in the dentate gyrus by adult-born neurons. | Drew LJ, Kheirbek MA, Luna VM, Denny CA, Cloidt MA, Wu MV, Jain S, Scharfman HE, Hen R | Hippocampus | 26662922 | Hippocampus | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/26662922 |
| Ketamine as a Prophylactic Against Stress-Induced Depressive-like Behavior. | Brachman RA, McGowan JC, Perusini JN, Lim SC, Pham TH, Faye C, Gardier AM, Mendez-David I, David DJ, Hen R, Denny CA | Biological psychiatry | 26037911 | Biol Psychiatry | 2016 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/26037911 |
| Sex-Specific Effects of Anxiety on Cognition and Activity-Dependent Neural Networks: Insights from (Female) Mice and (Wo)Men. | Hunsberger HC, Lee S, Jin M, Lanio M, Whye A, Cha J, Scarlata M, Jayaseelan K, Denny CA | bioRxiv : the preprint server for biology | 37503264 | bioRxiv | 2023 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/37503264 |
| Propranolol Decreases Fear Expression by Modulating Fear Memory Traces. | Leal Santos S, Stackmann M, Muñoz Zamora A, Mastrodonato A, De Landri AV, Vaughan N, Chen BK, Lanio M, Denny CA | Biological psychiatry | 33766406 | Biol Psychiatry | 2021 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/33766406 |
| Antidepressant but Not Prophylactic Ketamine Administration Alters Calretinin and Calbindin Expression in the Ventral Hippocampus. | LaGamma CT, Tang WW, Morgan AA, McGowan JC, Brachman RA, Denny CA | Frontiers in molecular neuroscience | 30459554 | Front Mol Neurosci | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30459554 |
| Optogenetic stimulation of dentate gyrus engrams restores memory in Alzheimer's disease mice. | Perusini JN, Cajigas SA, Cohensedgh O, Lim SC, Pavlova IP, Donaldson ZR, Denny CA | Hippocampus | 28667669 | Hippocampus | 2017 Oct | https://www.ncbi.nlm.nih.gov/pubmed/28667669 |
| Prophylactic (R,S)-Ketamine and (2S,6S)-Hydroxynorketamine Decrease Fear Expression by Differentially Modulating Fear Neural Ensembles. | Mastrodonato A, Jin M, Kee N, Lanio M, Tapia J, Quintana L, Muñoz Zamora A, Deng SX, Xu X, Landry DW, Denny CA | Biological psychiatry | 39389408 | Biol Psychiatry | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/39389408 |
| Prophylactic (R,S)-ketamine selectively protects against inflammatory stressors. | Mastrodonato A, Cohensedgh O, LaGamma CT, McGowan JC, Hunsberger HC, Denny CA | Behavioural brain research | 31563463 | Behav Brain Res | 2020 Jan 27 | https://www.ncbi.nlm.nih.gov/pubmed/31563463 |
| Divergence in the metabolome between natural aging and Alzheimer's disease. | Hunsberger HC, Greenwood BP, Tolstikov V, Narain NR, Kiebish MA, Denny CA | Scientific reports | 32699218 | Sci Rep | 2020 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/32699218 |
| Ventral CA3 Activation Mediates Prophylactic Ketamine Efficacy Against Stress-Induced Depressive-like Behavior. | Mastrodonato A, Martinez R, Pavlova IP, LaGamma CT, Brachman RA, Robison AJ, Denny CA | Biological psychiatry | 29615190 | Biol Psychiatry | 2018 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/29615190 |
| Sex-Specific Effects of Anxiety on Cognition and Activity-Dependent Neural Networks: Insights From (Female) Mice and (Wo)men. | Hunsberger HC, Lee S, Jin M, Lanio M, Whye A, Cha J, Scarlata M, Matthews LC, Jayaseelan K, Denny CA, Alzheimer’s Disease Neuroimaging Initiative | Biological psychiatry | 39349155 | Biol Psychiatry | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/39349155 |
| Prophylactic Ketamine Attenuates Learned Fear. | McGowan JC, LaGamma CT, Lim SC, Tsitsiklis M, Neria Y, Brachman RA, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 28128336 | Neuropsychopharmacology | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28128336 |
| The participation of cortical amygdala in innate, odour-driven behaviour. | Root CM, Denny CA, Hen R, Axel R | Nature | 25383519 | Nature | 2014 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/25383519 |
| Improved specificity of hippocampal memory trace labeling. | Cazzulino AS, Martinez R, Tomm NK, Denny CA | Hippocampus | 26662713 | Hippocampus | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/26662713 |
| Traumatic Brain Injury-Induced Fear Generalization in Mice Involves Hippocampal Memory Trace Dysfunction and Is Alleviated by (R,S)-Ketamine. | McGowan JC, Ladner LR, Shubeck CX, Tapia J, LaGamma CT, Anqueira-González A, DeFrancesco A, Chen BK, Hunsberger HC, Sydnor EJ, Logan RW, Yu TS, Kernie SG, Denny CA | Biological psychiatry | 37423591 | Biol Psychiatry | 2024 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/37423591 |
| Hippocampal memory traces are differentially modulated by experience, time, and adult neurogenesis. | Denny CA, Kheirbek MA, Alba EL, Tanaka KF, Brachman RA, Laughman KB, Tomm NK, Turi GF, Losonczy A, Hen R | Neuron | 24991962 | Neuron | 2014 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/24991962 |
| Prophylactic ketamine alters nucleotide and neurotransmitter metabolism in brain and plasma following stress. | McGowan JC, Hill C, Mastrodonato A, LaGamma CT, Kitayev A, Brachman RA, Narain NR, Kiebish MA, Denny CA | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 29599484 | Neuropsychopharmacology | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29599484 |
| Trans-illumination intestine projection imaging of intestinal motility in mice. | Wang D, Zhang H, Vu T, Zhan Y, Malhotra A, Wang P, Chitgupi U, Rai A, Zhang S, Wang L, Huizinga JD, Lovell JF, Xia J | Nature communications | 33727562 | Nat Commun | 2021 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/33727562 |
| Antigen Engineering Approaches for Lyme Disease Vaccines. | Federizon J, Lin YP, Lovell JF | Bioconjugate chemistry | 30987418 | Bioconjug Chem | 2019 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/30987418 |
| A surfactant-stripped cabazitaxel micelle formulation optimized with accelerated storage stability. | Sun B, Jing H, Mabrouk MT, Zhang Y, Jin H, Lovell JF | Pharmaceutical development and technology | 32892678 | Pharm Dev Technol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32892678 |
| A Phosphorus Phthalocyanine Formulation with Intense Absorbance at 1000 nm for Deep Optical Imaging. | Zhou Y, Wang D, Zhang Y, Chitgupi U, Geng J, Wang Y, Zhang Y, Cook TR, Xia J, Lovell JF | Theranostics | 27022416 | Theranostics | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27022416 |
| Non-invasive multimodal functional imaging of the intestine with frozen micellar naphthalocyanines. | Zhang Y, Jeon M, Rich LJ, Hong H, Geng J, Zhang Y, Shi S, Barnhart TE, Alexandridis P, Huizinga JD, Seshadri M, Cai W, Kim C, Lovell JF | Nature nanotechnology | 24997526 | Nat Nanotechnol | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/24997526 |
| A malaria vaccine adjuvant based on recombinant antigen binding to liposomes. | Huang WC, Deng B, Lin C, Carter KA, Geng J, Razi A, He X, Chitgupi U, Federizon J, Sun B, Long CA, Ortega J, Dutta S, King CR, Miura K, Lee SM, Lovell JF | Nature nanotechnology | 30297818 | Nat Nanotechnol | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30297818 |
| Indocyanine green binds to DOTAP liposomes for enhanced optical properties and tumor photoablation. | Miranda D, Wan C, Kilian HI, Mabrouk MT, Zhou Y, Jin H, Lovell JF | Biomaterials science | 31232421 | Biomater Sci | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31232421 |
| Highly-Soluble Cyanine J-aggregates Entrapped by Liposomes for In Vivo Optical Imaging around 930 nm. | Miranda D, Huang H, Kang H, Zhan Y, Wang D, Zhou Y, Geng J, Kilian HI, Stiles W, Razi A, Ortega J, Xia J, Choi HS, Lovell JF | Theranostics | 30809281 | Theranostics | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30809281 |
| Intrabilayer (64)Cu Labeling of Photoactivatable, Doxorubicin-Loaded Stealth Liposomes. | Luo D, Goel S, Liu HJ, Carter KA, Jiang D, Geng J, Kutyreff CJ, Engle JW, Huang WC, Shao S, Fang C, Cai W, Lovell JF | ACS nano | 29195037 | ACS Nano | 2017 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/29195037 |
| Directed vaccination against pneumococcal disease. | Li Y, Hill A, Beitelshees M, Shao S, Lovell JF, Davidson BA, Knight PR 3rd, Hakansson AP, Pfeifer BA, Jones CH | Proceedings of the National Academy of Sciences of the United States of America | 27274071 | Proc Natl Acad Sci U S A | 2016 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/27274071 |
| Surfactant-Stripped Frozen Pheophytin Micelles for Multimodal Gut Imaging. | Zhang Y, Wang D, Goel S, Sun B, Chitgupi U, Geng J, Sun H, Barnhart TE, Cai W, Xia J, Lovell JF | Advanced materials (Deerfield Beach, Fla.) | 27396479 | Adv Mater | 2016 Oct | https://www.ncbi.nlm.nih.gov/pubmed/27396479 |
| Recent applications of phthalocyanines and naphthalocyanines for imaging and therapy. | Zhang Y, Lovell JF | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 27439671 | Wiley Interdiscip Rev Nanomed Nanobiotechnol | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27439671 |
| Emerging applications of porphyrins in photomedicine. | Huang H, Song W, Rieffel J, Lovell JF | Frontiers in physics | 28553633 | Front Phys | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28553633 |
| Mechanisms of Light-induced Liposome Permeabilization. | Miranda D, Lovell JF | Bioengineering & translational medicine | 28367505 | Bioeng Transl Med | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28367505 |
| Photoactivation of sulfonated polyplexes enables localized gene silencing by DsiRNA in breast cancer cells. | Puri A, Viard M, Zakrevsky P, Zampino S, Chen A, Isemann C, Alvi S, Clogston J, Chitgupi U, Lovell JF, Shapiro BA | Nanomedicine : nanotechnology, biology, and medicine | 32151748 | Nanomedicine | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32151748 |
| Clinical development and potential of photothermal and photodynamic therapies for cancer. | Li X, Lovell JF, Yoon J, Chen X | Nature reviews. Clinical oncology | 32699309 | Nat Rev Clin Oncol | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32699309 |
| Folate-Targeted Nanoliposomal Chemophototherapy. | Chitgupi U, Qin Y, Ghosh S, Quinn B, Carter K, He X, Sunar U, Lovell JF | Pharmaceutics | 37896144 | Pharmaceutics | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37896144 |
| Trends in New Diagnoses of Atrial Fibrillation After Release of an ECG-Capable Smartwatch. | Zimerman A, Sheridan B, Cooke S, Jena AB | Circulation | 32833515 | Circulation | 2020 Aug 25 | https://www.ncbi.nlm.nih.gov/pubmed/32833515 |
| Chronic Disease Prevalence and Healthy Lifestyle Behaviors Among US Health Care Professionals. | Dayoub E, Jena AB | Mayo Clinic proceedings | 26422242 | Mayo Clin Proc | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26422242 |
| The declining demand for hospital care as a rationale for duty hour reform. | Jena AB, DePasse JW, Prasad V | Journal of general internal medicine | 24866469 | J Gen Intern Med | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24866469 |
| Association between treatment toxicity and outcomes in oncology clinical trials. | Abola MV, Prasad V, Jena AB | Annals of oncology : official journal of the European Society for Medical Oncology | 25193993 | Ann Oncol | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25193993 |
| Access, quality, and costs of care at physician owned hospitals in the United States: observational study. | Blumenthal DM, Orav EJ, Jena AB, Dudzinski DM, Le ST, Jha AK | BMJ (Clinical research ed.) | 26333819 | BMJ | 2015 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/26333819 |
| Do heads of government age more quickly? Observational study comparing mortality between elected leaders and runners-up in national elections of 17 countries. | Olenski AR, Abola MV, Jena AB | BMJ (Clinical research ed.) | 26666894 | BMJ | 2015 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/26666894 |
| Medical professional liability risk among US cardiologists. | Mangalmurti S, Seabury SA, Chandra A, Lakdawalla D, Oetgen WJ, Jena AB | American heart journal | 24766979 | Am Heart J | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/24766979 |
| Careful use of science to advance the debate on the UK Cancer Drugs Fund. | Lakdawalla DN, Jena AB, Doctor JN | JAMA | 24381964 | JAMA | 2014 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/24381964 |
| Identifying outlier patterns of inconsistent ambulance billing in Medicare. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Health services research | 33492665 | Health Serv Res | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33492665 |
| Decline and Rebound in Routine Cancer Screening Rates During the COVID-19 Pandemic. | McBain RK, Cantor JH, Jena AB, Pera MF, Bravata DM, Whaley CM | Journal of general internal medicine | 33742300 | J Gen Intern Med | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33742300 |
| Longitudinal analyses of gender differences in first authorship publications related to COVID-19. | Lerchenmüller C, Schmallenbach L, Jena AB, Lerchenmueller MJ | BMJ open | 33820790 | BMJ Open | 2021 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/33820790 |
| Behavioral Heuristics in Coronary-Artery Bypass Graft Surgery. | Olenski AR, Zimerman A, Coussens S, Jena AB | The New England journal of medicine | 32074429 | N Engl J Med | 2020 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/32074429 |
| Association of residency work hour reform with long term quality and costs of care of US physicians: observational study. | Jena AB, Farid M, Blumenthal D, Bhattacharya J | BMJ (Clinical research ed.) | 31292124 | BMJ | 2019 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/31292124 |
| Factors Associated with Psychiatrist Opt-out from US Medicare: an Observational Study. | Yu J, Jena AB, Mandic PK, Golberstein E | Journal of general internal medicine | 31420824 | J Gen Intern Med | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31420824 |
| Early death after discharge from emergency departments: analysis of national US insurance claims data. | Obermeyer Z, Cohn B, Wilson M, Jena AB, Cutler DM | BMJ (Clinical research ed.) | 28148486 | BMJ | 2017 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/28148486 |
| Quality of care delivered by general internists in US hospitals who graduated from foreign versus US medical schools: observational study. | Tsugawa Y, Jena AB, Orav EJ, Jha AK | BMJ (Clinical research ed.) | 28153977 | BMJ | 2017 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/28153977 |
| Regression discontinuity designs in healthcare research. | Venkataramani AS, Bor J, Jena AB | BMJ (Clinical research ed.) | 26977086 | BMJ | 2016 Mar 14 | https://www.ncbi.nlm.nih.gov/pubmed/26977086 |
| Screening Mammography for Free: Impact of Eliminating Cost Sharing on Cancer Screening Rates. | Jena AB, Huang J, Fireman B, Fung V, Gazelle S, Landrum MB, Chernew M, Newhouse JP, Hsu J | Health services research | 26990550 | Health Serv Res | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/26990550 |
| Association Between Playing American Football in the National Football League and Long-term Mortality. | Venkataramani AS, Gandhavadi M, Jena AB | JAMA | 29392304 | JAMA | 2018 Feb 27 | https://www.ncbi.nlm.nih.gov/pubmed/29392304 |
| Tying Reimbursement to Outcomes Is an Ideal Strategy for PCSK9 Inhibitors. | Blumenthal DM, Goldman D, Jena AB | JAMA cardiology | 28854318 | JAMA Cardiol | 2017 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/28854318 |
| Physician age and outcomes in elderly patients in hospital in the US: observational study. | Tsugawa Y, Newhouse JP, Zaslavsky AM, Blumenthal DM, Jena AB | BMJ (Clinical research ed.) | 28512089 | BMJ | 2017 May 16 | https://www.ncbi.nlm.nih.gov/pubmed/28512089 |
| The Impact of the US Food and Drug Administration Chlorofluorocarbon Ban on Out-of-pocket Costs and Use of Albuterol Inhalers Among Individuals With Asthma. | Jena AB, Ho O, Goldman DP, Karaca-Mandic P | JAMA internal medicine | 25962128 | JAMA Intern Med | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25962128 |
| Turning evidence into practice under payment reform: the new frontier of translational science. | Jena AB, Stevens W, McWilliams JM | Journal of general internal medicine | 25092013 | J Gen Intern Med | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25092013 |
| Medical malpractice reform: noneconomic damages caps reduced payments 15 percent, with varied effects by specialty. | Seabury SA, Helland E, Jena AB | Health affairs (Project Hope) | 25339633 | Health Aff (Millwood) | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25339633 |
| The Trade-off Between Speed and Safety in Drug Approvals. | Jena AB, Zhang J, Lakdawalla DN | JAMA oncology | 27684643 | JAMA Oncol | 2017 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/27684643 |
| Physician Network Connections Associated With Faster De-Adoption of Dronedarone for Permanent Atrial Fibrillation. | Stecher C, Everhart A, Smith LB, Jena A, Ross JS, Desai NR, Shah N, Karaca-Mandic P | Circulation. Cardiovascular quality and outcomes | 34555928 | Circ Cardiovasc Qual Outcomes | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/34555928 |
| Exposing physicians to reduced residency work hours did not adversely affect patient outcomes after residency. | Jena AB, Schoemaker L, Bhattacharya J | Health affairs (Project Hope) | 25288430 | Health Aff (Millwood) | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25288430 |
| Long-term effects of the 2003 ACGME resident duty hour reform on hospital mortality. | Jena AB, Prasad V, Romley JA | Mayo Clinic proceedings | 24996240 | Mayo Clin Proc | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24996240 |
| Mortality among high-risk patients with acute myocardial infarction admitted to U.S. teaching-intensive hospitals in July: a retrospective observational study. | Jena AB, Sun EC, Romley JA | Circulation | 24152859 | Circulation | 2013 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/24152859 |
| Association between use of warfarin with common sulfonylureas and serious hypoglycemic events: retrospective cohort analysis. | Romley JA, Gong C, Jena AB, Goldman DP, Williams B, Peters A | BMJ (Clinical research ed.) | 26643108 | BMJ | 2015 Dec 7 | https://www.ncbi.nlm.nih.gov/pubmed/26643108 |
| Outcomes-Based Pricing as a Tool to Ensure Access to Novel but Expensive Biopharmaceuticals. | Blumenthal DM, Goldman DP, Jena AB | Annals of internal medicine | 27951598 | Ann Intern Med | 2017 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/27951598 |
| Comparison of Hospital Mortality and Readmission Rates for Medicare Patients Treated by Male vs Female Physicians. | Tsugawa Y, Jena AB, Figueroa JF, Orav EJ, Blumenthal DM, Jha AK | JAMA internal medicine | 27992617 | JAMA Intern Med | 2017 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/27992617 |
| Delays in Emergency Care and Mortality during Major U.S. Marathons. | Jena AB, Mann NC, Wedlund LN, Olenski A | The New England journal of medicine | 28402772 | N Engl J Med | 2017 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/28402772 |
| Variation in Physician Spending and Association With Patient Outcomes. | Tsugawa Y, Jha AK, Newhouse JP, Zaslavsky AM, Jena AB | JAMA internal medicine | 28288254 | JAMA Intern Med | 2017 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/28288254 |
| Physician spending and subsequent risk of malpractice claims: observational study. | Jena AB, Schoemaker L, Bhattacharya J, Seabury SA | BMJ (Clinical research ed.) | 26538498 | BMJ | 2015 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/26538498 |
| Trends in the Price per Median and Mean Life-Year Gained Among Newly Approved Cancer Therapies 1995 to 2017. | Chen AJ, Hu X, Conti RM, Jena AB, Goldman DP | Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research | 31806195 | Value Health | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31806195 |
| The need for speed: observational study of physician driving behaviors. | Zimerman A, Worsham C, Woo J, Jena AB | BMJ (Clinical research ed.) | 31852682 | BMJ | 2019 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/31852682 |
| Characteristics of Physicians Excluded From US Medicare and State Public Insurance Programs for Fraud, Health Crimes, or Unlawful Prescribing of Controlled Substances. | Chen A, Blumenthal DM, Jena AB | JAMA network open | 30646294 | JAMA Netw Open | 2018 Dec 7 | https://www.ncbi.nlm.nih.gov/pubmed/30646294 |
| Comparison of Anesthesia Times and Billing Patterns by Anesthesia Practitioners. | Sun EC, Dutton RP, Jena AB | JAMA network open | 30646351 | JAMA Netw Open | 2018 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/30646351 |
| U.S. Immigration Policy and American Medical Research: The Scientific Contributions of Foreign Medical Graduates. | Khullar D, Blumenthal DM, Olenski AR, Jena AB | Annals of internal medicine | 28973126 | Ann Intern Med | 2017 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/28973126 |
| Sex Differences in Time Spent on Household Activities and Care of Children Among US Physicians, 2003-2016. | Ly DP, Jena AB | Mayo Clinic proceedings | 29673711 | Mayo Clin Proc | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/29673711 |
| Distribution of Prescription Opioid Use Among Privately Insured Adults Without Cancer: United States, 2001 to 2013. | Sun EC, Jena AB | Annals of internal medicine | 28892817 | Ann Intern Med | 2017 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/28892817 |
| Sex Differences in Physician Salary in US Public Medical Schools. | Jena AB, Olenski AR, Blumenthal DM | JAMA internal medicine | 27400435 | JAMA Intern Med | 2016 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/27400435 |
| Hospital Prescribing of Opioids to Medicare Beneficiaries. | Jena AB, Goldman D, Karaca-Mandic P | JAMA internal medicine | 27294595 | JAMA Intern Med | 2016 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/27294595 |
| Adverse inpatient outcomes during the transition to a new electronic health record system: observational study. | Barnett ML, Mehrotra A, Jena AB | BMJ (Clinical research ed.) | 27471242 | BMJ | 2016 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/27471242 |
| Patient and provider-level factors associated with changes in utilization of treatments in response to evidence on ineffectiveness or harm. | Smith LB, Desai NR, Dowd B, Everhart A, Herrin J, Higuera L, Jeffery MM, Jena AB, Ross JS, Shah ND, Karaca-Mandic P | International journal of health economics and management | 32350680 | Int J Health Econ Manag | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32350680 |
| Sex Differences in Academic Rank in US Medical Schools in 2014. | Jena AB, Khullar D, Ho O, Olenski AR, Blumenthal DM | JAMA | 26372584 | JAMA | 2015 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/26372584 |
| Opioid-Prescribing Patterns of Emergency Physicians and Risk of Long-Term Use. | Barnett ML, Olenski AR, Jena AB | The New England journal of medicine | 28199807 | N Engl J Med | 2017 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/28199807 |
| Health and Health Care Use Among Individuals at Risk to Lose Health Insurance With Repeal of the Affordable Care Act. | Karaca-Mandic P, Jena AB, Ross JS | JAMA internal medicine | 28114528 | JAMA Intern Med | 2017 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/28114528 |
| The association between physician turnover (the "July Effect") and survival after in-hospital cardiac arrest. | Myers L, Mikhael B, Currier P, Berg K, Jena A, Donnino M, Andersen LW, American Heart Association’s Get with the Guidelines-Resuscitation Investigators | Resuscitation | 28285032 | Resuscitation | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28285032 |
| Sex Differences in Faculty Rank Among Academic Cardiologists in the United States. | Blumenthal DM, Olenski AR, Yeh RW, DeFaria Yeh D, Sarma A, Stefanescu Schmidt AC, Wood MJ, Jena AB | Circulation | 28153987 | Circulation | 2017 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/28153987 |
| Rates and Characteristics of Paid Malpractice Claims Among US Physicians by Specialty, 1992-2014. | Schaffer AC, Jena AB, Seabury SA, Singh H, Chalasani V, Kachalia A | JAMA internal medicine | 28346582 | JAMA Intern Med | 2017 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/28346582 |
| Attention Deficit-Hyperactivity Disorder and Month of School Enrollment. | Layton TJ, Barnett ML, Hicks TR, Jena AB | The New England journal of medicine | 30485780 | N Engl J Med | 2018 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/30485780 |
| Golf habits among physicians and surgeons: observational cohort study. | Koplewitz G, Blumenthal DM, Gross N, Hicks T, Jena AB | BMJ (Clinical research ed.) | 30530803 | BMJ | 2018 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/30530803 |
| Association of Overlapping Surgery With Perioperative Outcomes. | Sun E, Mello MM, Rishel CA, Vaughn MT, Kheterpal S, Saager L, Fleisher LA, Damrose EJ, Kadry B, Jena AB, Multicenter Perioperative Outcomes Group (MPOG) | JAMA | 30806696 | JAMA | 2019 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/30806696 |
| Association between physician US News & World Report medical school ranking and patient outcomes and costs of care: observational study. | Tsugawa Y, Blumenthal DM, Jha AK, Orav EJ, Jena AB | BMJ (Clinical research ed.) | 30257919 | BMJ | 2018 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/30257919 |
| Proportion of Non-US-Born and Noncitizen Health Care Professionals in the United States in 2016. | Patel YM, Ly DP, Hicks T, Jena AB | JAMA | 30512091 | JAMA | 2018 Dec 4 | https://www.ncbi.nlm.nih.gov/pubmed/30512091 |
| A Health Plan's Formulary Led To Reduced Use Of Extended-Release Opioids But Did Not Lower Overall Opioid Use. | Barnett ML, Olenski AR, Thygeson NM, Ishisaka D, Wong S, Jena AB, Mehrotra A | Health affairs (Project Hope) | 30179550 | Health Aff (Millwood) | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30179550 |
| Association Between Treatment by Locum Tenens Internal Medicine Physicians and 30-Day Mortality Among Hospitalized Medicare Beneficiaries. | Blumenthal DM, Olenski AR, Tsugawa Y, Jena AB | JAMA | 29209722 | JAMA | 2017 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/29209722 |
| Association between rainfall and diagnoses of joint or back pain: retrospective claims analysis. | Jena AB, Olenski AR, Molitor D, Miller N | BMJ (Clinical research ed.) | 29237605 | BMJ | 2017 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/29237605 |
| Reducing Diagnostic Errors--Why Now? | Khullar D, Jha AK, Jena AB | The New England journal of medicine | 26397948 | N Engl J Med | 2015 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/26397948 |
| Outcomes of Basic Versus Advanced Life Support for Out-of-Hospital Medical Emergencies. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Annals of internal medicine | 26457627 | Ann Intern Med | 2015 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/26457627 |
| Authorship Inflation in Medical Publications. | Tilak G, Prasad V, Jena AB | Inquiry : a journal of medical care organization, provision and financing | 26228035 | Inquiry | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26228035 |
| The Peltzman effect and compensatory markers in medicine. | Prasad V, Jena AB | Healthcare (Amsterdam, Netherlands) | 25396116 | Healthc (Amst) | 2014 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/25396116 |
| Mortality and treatment patterns among patients hospitalized with acute cardiovascular conditions during dates of national cardiology meetings. | Jena AB, Prasad V, Goldman DP, Romley J | JAMA internal medicine | 25531231 | JAMA Intern Med | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25531231 |
| Association of Grit Scores With Treatment Adherence and Biomarkers in Patients With Type 2 Diabetes. | Peña PA, Pérez-Díaz I, Pulido-Ayala AK, Osorio-Landa HK, López-Navarro JM, Duckworth AL, Jena AB | JAMA network open | 31517961 | JAMA Netw Open | 2019 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/31517961 |
| Gender differences in how scientists present the importance of their research: observational study. | Lerchenmueller MJ, Sorenson O, Jena AB | BMJ (Clinical research ed.) | 31843745 | BMJ | 2019 Dec 16 | https://www.ncbi.nlm.nih.gov/pubmed/31843745 |
| Prescription Patterns of Family Members After Discontinued Opioid or Benzodiazepine Therapy of Users. | Barnett ML, Hicks TR, Jena AB | JAMA internal medicine | 31260053 | JAMA Intern Med | 2019 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/31260053 |
| Birth Month and Influenza Vaccination in Children. | Worsham C, Woo J, Jena AB | The New England journal of medicine | 32640138 | N Engl J Med | 2020 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/32640138 |
| Acute Myocardial Infarction Mortality During Dates of National Interventional Cardiology Meetings. | Jena AB, Olenski A, Blumenthal DM, Yeh RW, Goldman DP, Romley J | Journal of the American Heart Association | 29523525 | J Am Heart Assoc | 2018 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/29523525 |
| Patient mortality after surgery on the surgeon's birthday: observational study. | Kato H, Jena AB, Tsugawa Y | BMJ (Clinical research ed.) | 34913872 | BMJ | 2020 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/34913872 |
| Opioid prescribing by multiple providers in Medicare: retrospective observational study of insurance claims. | Jena AB, Goldman D, Weaver L, Karaca-Mandic P | BMJ (Clinical research ed.) | 24553363 | BMJ | 2014 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/24553363 |
| Does the declining lethality of gunshot injuries mask a rising epidemic of gun violence in the United States? | Jena AB, Sun EC, Prasad V | Journal of general internal medicine | 24452421 | J Gen Intern Med | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24452421 |
| Incidence of sexually transmitted infections after human papillomavirus vaccination among adolescent females. | Jena AB, Goldman DP, Seabury SA | JAMA internal medicine | 25664968 | JAMA Intern Med | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25664968 |
| Divorce among physicians and other healthcare professionals in the United States: analysis of census survey data. | Ly DP, Seabury SA, Jena AB | BMJ (Clinical research ed.) | 25694110 | BMJ | 2015 Feb 18 | https://www.ncbi.nlm.nih.gov/pubmed/25694110 |
| Does Pain Lead to Tachycardia? Revisiting the Association Between Self-reported Pain and Heart Rate in a National Sample of Urgent Emergency Department Visits. | Dayoub EJ, Jena AB | Mayo Clinic proceedings | 26250732 | Mayo Clin Proc | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26250732 |
| Mandatory use of prescription drug monitoring programs. | Haffajee RL, Jena AB, Weiner SG | JAMA | 25622279 | JAMA | 2015 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/25622279 |
| Reducing prognostic errors: a new imperative in quality healthcare. | Khullar D, Jena AB | BMJ (Clinical research ed.) | 26993146 | BMJ | 2016 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/26993146 |
| Utilization of Telemedicine Among Rural Medicare Beneficiaries. | Mehrotra A, Jena AB, Busch AB, Souza J, Uscher-Pines L, Landon BE | JAMA | 27163991 | JAMA | 2016 May 10 | https://www.ncbi.nlm.nih.gov/pubmed/27163991 |
| Outcomes after out-of-hospital cardiac arrest treated by basic vs advanced life support. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | JAMA internal medicine | 25419698 | JAMA Intern Med | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25419698 |
| College affirmative action bans and smoking and alcohol use among underrepresented minority adolescents in the United States: A difference-in-differences study. | Venkataramani AS, Cook E, O'Brien RL, Kawachi I, Jena AB, Tsai AC | PLoS medicine | 31211777 | PLoS Med | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31211777 |
| Outcomes of Basic Versus Advanced Life Support for Out-of-Hospital Medical Emergencies. | Sanghavi P, Jena AB, Newhouse JP, Zaslavsky AM | Annals of internal medicine | 27380156 | Ann Intern Med | 2016 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/27380156 |
| Differences in incomes of physicians in the United States by race and sex: observational study. | Ly DP, Seabury SA, Jena AB | BMJ (Clinical research ed.) | 27268490 | BMJ | 2016 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/27268490 |
| Disrupted prenatal RNA processing and myogenesis in congenital myotonic dystrophy. | Thomas JD, Sznajder ŁJ, Bardhi O, Aslam FN, Anastasiadis ZP, Scotti MM, Nishino I, Nakamori M, Wang ET, Swanson MS | Genes & development | 28698297 | Genes Dev | 2017 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/28698297 |
| Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development. | Giudice J, Xia Z, Wang ET, Scavuzzo MA, Ward AJ, Kalsotra A, Wang W, Wehrens XH, Burge CB, Li W, Cooper TA | Nature communications | 24752171 | Nat Commun | 2014 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
| Dose-Dependent Regulation of Alternative Splicing by MBNL Proteins Reveals Biomarkers for Myotonic Dystrophy. | Wagner SD, Struck AJ, Gupta R, Farnsworth DR, Mahady AE, Eichinger K, Thornton CA, Wang ET, Berglund JA | PLoS genetics | 27681373 | PLoS Genet | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27681373 |
| Conservation of context-dependent splicing activity in distant Muscleblind homologs. | Oddo JC, Saxena T, McConnell OL, Berglund JA, Wang ET | Nucleic acids research | 27557707 | Nucleic Acids Res | 2016 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/27557707 |
| The skeletal muscle circadian clock regulates titin splicing through RBM20. | Riley LA, Zhang X, Douglas CM, Mijares JM, Hammers DW, Wolff CA, Wood NB, Olafson HR, Du P, Labeit S, Previs MJ, Wang ET, Esser KA | eLife | 36047761 | Elife | 2022 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/36047761 |
| Antagonistic regulation of mRNA expression and splicing by CELF and MBNL proteins. | Wang ET, Ward AJ, Cherone JM, Giudice J, Wang TT, Treacy DJ, Lambert NJ, Freese P, Saxena T, Cooper TA, Burge CB | Genome research | 25883322 | Genome Res | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/25883322 |
| Genomic analysis of RNA localization. | Taliaferro JM, Wang ET, Burge CB | RNA biology | 25483039 | RNA Biol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25483039 |
| Transcriptome alterations in myotonic dystrophy skeletal muscle and heart. | Wang ET, Treacy D, Eichinger K, Struck A, Estabrook J, Olafson H, Wang TT, Bhatt K, Westbrook T, Sedehizadeh S, Ward A, Day J, Brook D, Berglund JA, Cooper T, Housman D, Thornton C, Burge C | Human molecular genetics | 30561649 | Hum Mol Genet | 2019 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/30561649 |
| A Defective mRNA Cleavage and Polyadenylation Complex Facilitates Expansions of Transcribed (GAA)(n) Repeats Associated with Friedreich's Ataxia. | McGinty RJ, Puleo F, Aksenova AY, Hisey JA, Shishkin AA, Pearson EL, Wang ET, Housman DE, Moore C, Mirkin SM | Cell reports | 28877480 | Cell Rep | 2017 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/28877480 |
| Skeletal muscle degenerative diseases and strategies for therapeutic muscle repair. | Tabebordbar M, Wang ET, Wagers AJ | Annual review of pathology | 23121053 | Annu Rev Pathol | 2013 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/23121053 |
| Barcoded nanoparticles for high throughput in vivo discovery of targeted therapeutics. | Dahlman JE, Kauffman KJ, Xing Y, Shaw TE, Mir FF, Dlott CC, Langer R, Anderson DG, Wang ET | Proceedings of the National Academy of Sciences of the United States of America | 28167778 | Proc Natl Acad Sci U S A | 2017 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/28167778 |
| An engineered RNA binding protein with improved splicing regulation. | Hale MA, Richardson JI, Day RC, McConnell OL, Arboleda J, Wang ET, Berglund JA | Nucleic acids research | 29309648 | Nucleic Acids Res | 2018 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/29309648 |
| Aberrant Myokine Signaling in Congenital Myotonic Dystrophy. | Nakamori M, Hamanaka K, Thomas JD, Wang ET, Hayashi YK, Takahashi MP, Swanson MS, Nishino I, Mochizuki H | Cell reports | 29091763 | Cell Rep | 2017 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/29091763 |
| Transcriptome-wide organization of subcellular microenvironments revealed by ATLAS-Seq. | Adekunle DA, Wang ET | Nucleic acids research | 32421779 | Nucleic Acids Res | 2020 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/32421779 |
| Distal Alternative Last Exons Localize mRNAs to Neural Projections. | Taliaferro JM, Vidaki M, Oliveira R, Olson S, Zhan L, Saxena T, Wang ET, Graveley BR, Gertler FB, Swanson MS, Burge CB | Molecular cell | 26907613 | Mol Cell | 2016 Mar 17 | https://www.ncbi.nlm.nih.gov/pubmed/26907613 |
| Myotonic dystrophy: disease repeat range, penetrance, age of onset, and relationship between repeat size and phenotypes. | Yum K, Wang ET, Kalsotra A | Current opinion in genetics & development | 28213156 | Curr Opin Genet Dev | 2017 Jun | https://www.ncbi.nlm.nih.gov/pubmed/28213156 |
| Dysregulation of mRNA Localization and Translation in Genetic Disease. | Wang ET, Taliaferro JM, Lee JA, Sudhakaran IP, Rossoll W, Gross C, Moss KR, Bassell GJ | The Journal of neuroscience : the official journal of the Society for Neuroscience | 27911744 | J Neurosci | 2016 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/27911744 |
| A Requirement for Mena, an Actin Regulator, in Local mRNA Translation in Developing Neurons. | Vidaki M, Drees F, Saxena T, Lanslots E, Taliaferro MJ, Tatarakis A, Burge CB, Wang ET, Gertler FB | Neuron | 28735747 | Neuron | 2017 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/28735747 |
| A flow cytometry-based screen identifies MBNL1 modulators that rescue splicing defects in myotonic dystrophy type I. | Zhang F, Bodycombe NE, Haskell KM, Sun YL, Wang ET, Morris CA, Jones LH, Wood LD, Pletcher MT | Human molecular genetics | 28535287 | Hum Mol Genet | 2017 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/28535287 |
| Myotonic dystrophy: approach to therapy. | Thornton CA, Wang E, Carrell EM | Current opinion in genetics & development | 28376341 | Curr Opin Genet Dev | 2017 Jun | https://www.ncbi.nlm.nih.gov/pubmed/28376341 |
| Culturing C2C12 myotubes on micromolded gelatin hydrogels accelerates myotube maturation. | Denes LT, Riley LA, Mijares JR, Arboleda JD, McKee K, Esser KA, Wang ET | Skeletal muscle | 31174599 | Skelet Muscle | 2019 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/31174599 |
| Bacterial interspecies interactions modulate pH-mediated antibiotic tolerance. | Aranda-Díaz A, Obadia B, Dodge R, Thomsen T, Hallberg ZF, Güvener ZT, Ludington WB, Huang KC | eLife | 31995029 | Elife | 2020 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/31995029 |
| Drosophila as a model for the gut microbiome. | Ludington WB, Ja WW | PLoS pathogens | 32324814 | PLoS Pathog | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32324814 |
| Cluster partitions and fitness landscapes of the Drosophila fly microbiome. | Eble H, Joswig M, Lamberti L, Ludington WB | Journal of mathematical biology | 31101975 | J Math Biol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31101975 |
| Stable Host Gene Expression in the Gut of Adult Drosophila melanogaster with Different Bacterial Mono-Associations. | Elya C, Zhang V, Ludington WB, Eisen MB | PloS one | 27898741 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27898741 |
| Master regulators of biological systems in higher dimensions. | Eble H, Joswig M, Lamberti L, Ludington WB | Proceedings of the National Academy of Sciences of the United States of America | 38096409 | Proc Natl Acad Sci U S A | 2023 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/38096409 |
| A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota. | Dodge R, Jones EW, Zhu H, Obadia B, Martinez DJ, Wang C, Aranda-Díaz A, Aumiller K, Liu Z, Voltolini M, Brodie EL, Huang KC, Carlson JM, Sivak DA, Spradling AC, Ludington WB | Nature communications | 36944617 | Nat Commun | 2023 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/36944617 |
| Bellymount enables longitudinal, intravital imaging of abdominal organs and the gut microbiota in adult Drosophila. | Koyama LAJ, Aranda-Díaz A, Su YH, Balachandra S, Martin JL, Ludington WB, Huang KC, O'Brien LE | PLoS biology | 31986129 | PLoS Biol | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31986129 |
| Microbial Quantity Impacts Drosophila Nutrition, Development, and Lifespan. | Keebaugh ES, Yamada R, Obadia B, Ludington WB, Ja WW | iScience | 30240744 | iScience | 2018 Jun 29 | https://www.ncbi.nlm.nih.gov/pubmed/30240744 |
| Diet influences host-microbiota associations in Drosophila. | Obadia B, Keebaugh ES, Yamada R, Ludington WB, Ja WW | Proceedings of the National Academy of Sciences of the United States of America | 29735646 | Proc Natl Acad Sci U S A | 2018 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/29735646 |
| Maternal IgG and IgA Antibodies Dampen Mucosal T Helper Cell Responses in Early Life. | Koch MA, Reiner GL, Lugo KA, Kreuk LS, Stanbery AG, Ansaldo E, Seher TD, Ludington WB, Barton GM | Cell | 27153495 | Cell | 2016 May 5 | https://www.ncbi.nlm.nih.gov/pubmed/27153495 |
| Gut microbiome dysbiosis is associated with host genetics in the Norwegian Lundehund. | Melis C, Billing AM, Wold PA, Ludington WB | Frontiers in microbiology | 37405168 | Front Microbiol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37405168 |
| Cellular and molecular organization of the Drosophila foregut. | Zhu H, Ludington WB, Spradling AC | Proceedings of the National Academy of Sciences of the United States of America | 38442150 | Proc Natl Acad Sci U S A | 2024 Mar 12 | https://www.ncbi.nlm.nih.gov/pubmed/38442150 |
| Probabilistic Invasion Underlies Natural Gut Microbiome Stability. | Obadia B, Güvener ZT, Zhang V, Ceja-Navarro JA, Brodie EL, Ja WW, Ludington WB | Current biology : CB | 28625783 | Curr Biol | 2017 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/28625783 |
| A chemically-defined growth medium to support Lactobacillus-Acetobacter sp. community analysis. | Aumiller K, Scheffler R, Stevens ET, Güvener ZT, Tung E, Grimaldo AB, Carlson HK, Deutschbauer AM, Taga ME, Marco ML, Ludington WB | PloS one | 37824485 | PLoS One | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37824485 |
| Commensal acidification of specific gut regions produces a protective priority effect against enteropathogenic bacterial infection. | Yang JL, Zhu H, Sadh P, Aumiller K, Guvener ZT, Ludington WB | Applied and environmental microbiology | 40801536 | Appl Environ Microbiol | 2025 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/40801536 |
| Stochastic microbiome assembly depends on context. | Jones EW, Carlson JM, Sivak DA, Ludington WB | Proceedings of the National Academy of Sciences of the United States of America | 35135881 | Proc Natl Acad Sci U S A | 2022 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/35135881 |
| Microbiome interactions shape host fitness. | Gould AL, Zhang V, Lamberti L, Jones EW, Obadia B, Korasidis N, Gavryushkin A, Carlson JM, Beerenwinkel N, Ludington WB | Proceedings of the National Academy of Sciences of the United States of America | 30510004 | Proc Natl Acad Sci U S A | 2018 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/30510004 |
| Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater. | Ludington WB, Seher TD, Applegate O, Li X, Kliegman JI, Langelier C, Atwill ER, Harter T, DeRisi JL | PloS one | 28384184 | PLoS One | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28384184 |
| Genetic Rescue of the Highly Inbred Norwegian Lundehund. | Melis C, Pertoldi C, Ludington WB, Beuchat C, Qvigstad G, Stronen AV | Genes | 35052503 | Genes (Basel) | 2022 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/35052503 |
| Microbiome-by-ethanol interactions impact Drosophila melanogaster fitness, physiology, and behavior. | Chandler JA, Innocent LV, Martinez DJ, Huang IL, Yang JL, Eisen MB, Ludington WB | iScience | 35313693 | iScience | 2022 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/35313693 |
| Fast Colony Forming Unit Counting in 96-Well Plate Format Applied to the Drosophila Microbiome. | Dodge R, Ludington WB | Journal of visualized experiments : JoVE | 36715413 | J Vis Exp | 2023 Jan 13 | https://www.ncbi.nlm.nih.gov/pubmed/36715413 |
| Cutting Edge: RIP1 kinase activity is dispensable for normal development but is a key regulator of inflammation in SHARPIN-deficient mice. | Berger SB, Kasparcova V, Hoffman S, Swift B, Dare L, Schaeffer M, Capriotti C, Cook M, Finger J, Hughes-Earle A, Harris PA, Kaiser WJ, Mocarski ES, Bertin J, Gough PJ | Journal of immunology (Baltimore, Md. : 1950) | 24821972 | J Immunol | 2014 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/24821972 |
| Necroptosis-based CRISPR knockout screen reveals Neuropilin-1 as a critical host factor for early stages of murine cytomegalovirus infection. | Lane RK, Guo H, Fisher AD, Diep J, Lai Z, Chen Y, Upton JW, Carette J, Mocarski ES, Kaiser WJ | Proceedings of the National Academy of Sciences of the United States of America | 32747526 | Proc Natl Acad Sci U S A | 2020 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/32747526 |
| Species-independent contribution of ZBP1/DAI/DLM-1-triggered necroptosis in host defense against HSV1. | Guo H, Gilley RP, Fisher A, Lane R, Landsteiner VJ, Ragan KB, Dovey CM, Carette JE, Upton JW, Mocarski ES, Kaiser WJ | Cell death & disease | 30050136 | Cell Death Dis | 2018 Jul 26 | https://www.ncbi.nlm.nih.gov/pubmed/30050136 |
| Murine cytomegalovirus IE3-dependent transcription is required for DAI/ZBP1-mediated necroptosis. | Sridharan H, Ragan KB, Guo H, Gilley RP, Landsteiner VJ, Kaiser WJ, Upton JW | EMBO reports | 28607035 | EMBO Rep | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28607035 |
| ESCRTing Necroptosis. | Guo H, Kaiser WJ | Cell | 28388403 | Cell | 2017 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/28388403 |
| Caspase-8 as an Effector and Regulator of NLRP3 Inflammasome Signaling. | Antonopoulos C, Russo HM, El Sanadi C, Martin BN, Li X, Kaiser WJ, Mocarski ES, Dubyak GR | The Journal of biological chemistry | 26100631 | J Biol Chem | 2015 Aug 14 | https://www.ncbi.nlm.nih.gov/pubmed/26100631 |
| Manipulation of apoptosis and necroptosis signaling by herpesviruses. | Guo H, Kaiser WJ, Mocarski ES | Medical microbiology and immunology | 25828583 | Med Microbiol Immunol | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/25828583 |
| Proapoptotic chemotherapeutic drugs induce noncanonical processing and release of IL-1β via caspase-8 in dendritic cells. | Antonopoulos C, El Sanadi C, Kaiser WJ, Mocarski ES, Dubyak GR | Journal of immunology (Baltimore, Md. : 1950) | 24078693 | J Immunol | 2013 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/24078693 |
| Optical-resolution photoacoustic microscopy with a needle-shaped beam. | Cao R, Zhao J, Li L, Du L, Zhang Y, Luo Y, Jiang L, Davis S, Zhou Q, de la Zerda A, Wang LV | Nature photonics | 38149029 | Nat Photonics | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38149029 |
| Imaging the glycosylation state of cell surface glycoproteins by two-photon fluorescence lifetime imaging microscopy. | Belardi B, de la Zerda A, Spiciarich DR, Maund SL, Peehl DM, Bertozzi CR | Angewandte Chemie (International ed. in English) | 24259491 | Angew Chem Int Ed Engl | 2013 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/24259491 |
| Spatiotemporal Tracking of Brain-Tumor-Associated Myeloid Cells in Vivo through Optical Coherence Tomography with Plasmonic Labeling and Speckle Modulation. | SoRelle ED, Yecies DW, Liba O, Bennett FC, Graef CM, Dutta R, Mitra S, Joubert LM, Cheshier S, Grant GA, de la Zerda A | ACS nano | 31259527 | ACS Nano | 2019 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/31259527 |
| Contrast-enhanced optical coherence tomography with picomolar sensitivity for functional in vivo imaging. | Liba O, SoRelle ED, Sen D, de la Zerda A | Scientific reports | 26987475 | Sci Rep | 2016 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/26987475 |
| Biofunctionalization of Large Gold Nanorods Realizes Ultrahigh-Sensitivity Optical Imaging Agents. | SoRelle ED, Liba O, Hussain Z, Gambhir M, de la Zerda A | Langmuir : the ACS journal of surfaces and colloids | 26477361 | Langmuir | 2015 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/26477361 |
| A hyperspectral method to assay the microphysiological fates of nanomaterials in histological samples. | SoRelle ED, Liba O, Campbell JL, Dalal R, Zavaleta CL, de la Zerda A | eLife | 27536877 | Elife | 2016 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/27536877 |
| Gold Nanobipyramids as Second Near Infrared Optical Coherence Tomography Contrast Agents for in Vivo Multiplexing Studies. | Si P, Shevidi S, Yuan E, Yuan K, Lautman Z, Jeffrey SS, Sledge GW, de la Zerda A | Nano letters | 31585502 | Nano Lett | 2020 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/31585502 |
| β2-microglobulin is a systemic pro-aging factor that impairs cognitive function and neurogenesis. | Smith LK, He Y, Park JS, Bieri G, Snethlage CE, Lin K, Gontier G, Wabl R, Plambeck KE, Udeochu J, Wheatley EG, Bouchard J, Eggel A, Narasimha R, Grant JL, Luo J, Wyss-Coray T, Villeda SA | Nature medicine | 26147761 | Nat Med | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26147761 |
| Migratory and adhesive cues controlling innate-like lymphocyte surveillance of the pathogen-exposed surface of the lymph node. | Zhang Y, Roth TL, Gray EE, Chen H, Rodda LB, Liang Y, Ventura P, Villeda S, Crocker PR, Cyster JG | eLife | 27487469 | Elife | 2016 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/27487469 |
| Mechanisms of Hippocampal Aging and the Potential for Rejuvenation. | Fan X, Wheatley EG, Villeda SA | Annual review of neuroscience | 28441118 | Annu Rev Neurosci | 2017 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/28441118 |
| Therapeutic potential of systemic brain rejuvenation strategies for neurodegenerative disease. | Horowitz AM, Villeda SA | F1000Research | 28815019 | F1000Res | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28815019 |
| Young blood reverses age-related impairments in cognitive function and synaptic plasticity in mice. | Villeda SA, Plambeck KE, Middeldorp J, Castellano JM, Mosher KI, Luo J, Smith LK, Bieri G, Lin K, Berdnik D, Wabl R, Udeochu J, Wheatley EG, Zou B, Simmons DA, Xie XS, Longo FM, Wyss-Coray T | Nature medicine | 24793238 | Nat Med | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24793238 |
| Aging and brain rejuvenation as systemic events. | Bouchard J, Villeda SA | Journal of neurochemistry | 25327899 | J Neurochem | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/25327899 |
| A tissue checkpoint regulates type 2 immunity. | Van Dyken SJ, Nussbaum JC, Lee J, Molofsky AB, Liang HE, Pollack JL, Gate RE, Haliburton GE, Ye CJ, Marson A, Erle DJ, Locksley RM | Nature immunology | 27749840 | Nat Immunol | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27749840 |
| Microglia communication: Parallels between aging and Alzheimer's disease. | Udeochu JC, Shea JM, Villeda SA | Clinical & experimental neuroimmunology | 27840659 | Clin Exp Neuroimmunol | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27840659 |
| The systemic environment: at the interface of aging and adult neurogenesis. | Smith LK, White CW 3rd, Villeda SA | Cell and tissue research | 29124393 | Cell Tissue Res | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29124393 |
| Short-term Outcomes for Medicare Beneficiaries After Low-acuity Visits to Emergency Departments and Clinics. | Niedzwiecki M, Baicker K, Wilson M, Cutler DM, Obermeyer Z | Medical care | 27078822 | Med Care | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27078822 |
| Research priorities for data collection and management within global acute and emergency care systems. | Reynolds TA, Bisanzo M, Dworkis D, Hansoti B, Obermeyer Z, Seidenberg P, Hauswald M, Mowafi H | Academic emergency medicine : official journal of the Society for Academic Emergency Medicine | 24341579 | Acad Emerg Med | 2013 Dec | https://www.ncbi.nlm.nih.gov/pubmed/24341579 |
| Prediction Policy Problems. | Kleinberg J, Ludwig J, Mullainathan S, Obermeyer Z | The American economic review | 27199498 | Am Econ Rev | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/27199498 |
| Predictive modeling of U.S. health care spending in late life. | Einav L, Finkelstein A, Mullainathan S, Obermeyer Z | Science (New York, N.Y.) | 29954980 | Science | 2018 Jun 29 | https://www.ncbi.nlm.nih.gov/pubmed/29954980 |
| Individual differences in normal body temperature: longitudinal big data analysis of patient records. | Obermeyer Z, Samra JK, Mullainathan S | BMJ (Clinical research ed.) | 29237616 | BMJ | 2017 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/29237616 |
| Physician Characteristics Strongly Predict Patient Enrollment In Hospice. | Obermeyer Z, Powers BW, Makar M, Keating NL, Cutler DM | Health affairs (Project Hope) | 26056205 | Health Aff (Millwood) | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/26056205 |
| Predicting the Future - Big Data, Machine Learning, and Clinical Medicine. | Obermeyer Z, Emanuel EJ | The New England journal of medicine | 27682033 | N Engl J Med | 2016 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/27682033 |
| Making recording and analysis of chief complaint a priority for global emergency care research in low-income countries. | Mowafi H, Dworkis D, Bisanzo M, Hansoti B, Seidenberg P, Obermeyer Z, Hauswald M, Reynolds TA | Academic emergency medicine : official journal of the Society for Academic Emergency Medicine | 24283813 | Acad Emerg Med | 2013 Dec | https://www.ncbi.nlm.nih.gov/pubmed/24283813 |
| Cost savings associated with expanded hospice use in Medicare. | Powers BW, Makar M, Jain SH, Cutler DM, Obermeyer Z | Journal of palliative medicine | 25806563 | J Palliat Med | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25806563 |
| Cause-specific risk of hospital admission related to extreme heat in older adults. | Bobb JF, Obermeyer Z, Wang Y, Dominici F | JAMA | 25536257 | JAMA | 2014 Dec 24-31 | https://www.ncbi.nlm.nih.gov/pubmed/25536257 |
| Frequency of ED revisits and death among older adults after a fall. | Liu SW, Obermeyer Z, Chang Y, Shankar KN | The American journal of emergency medicine | 25983268 | Am J Emerg Med | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/25983268 |
| Machine Learning in Health Care. | National Bureau of Economic Research bulletin on aging and health | 30272872 | Natl Bur Econ Res Bull Aging Health | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30272872 | |
| The Emergency Care of Patients With Cancer: Setting the Research Agenda. | Brown J, Grudzen C, Kyriacou DN, Obermeyer Z, Quest T, Rivera D, Stone S, Wright J, Shelburne N | Annals of emergency medicine | 26921969 | Ann Emerg Med | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26921969 |
| Development and Application of a Machine Learning Approach to Assess Short-term Mortality Risk Among Patients With Cancer Starting Chemotherapy. | Elfiky AA, Pany MJ, Parikh RB, Obermeyer Z | JAMA network open | 30646043 | JAMA Netw Open | 2018 Jul 6 | https://www.ncbi.nlm.nih.gov/pubmed/30646043 |
| Association of Clinical Characteristics With Variation in Emergency Physician Preferences for Patients. | Chang CY, Obermeyer Z | JAMA network open | 31968113 | JAMA Netw Open | 2020 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/31968113 |
| Acute myocardial infarction hospital admissions and deaths in England: a national follow-back and follow-forward record-linkage study. | Asaria P, Elliott P, Douglass M, Obermeyer Z, Soljak M, Majeed A, Ezzati M | The Lancet. Public health | 29253451 | Lancet Public Health | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29253451 |
| Early death after emergency department discharge in patients with psychiatric illness. | Chang BP, Pany MJ, Obermeyer Z | The American journal of emergency medicine | 27884584 | Am J Emerg Med | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/27884584 |
| Short-term Mortality Prediction for Elderly Patients Using Medicare Claims Data. | Makar M, Ghassemi M, Cutler DM, Obermeyer Z | International journal of machine learning and computing | 28018571 | Int J Mach Learn Comput | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/28018571 |
| Emergency care in 59 low- and middle-income countries: a systematic review. | Obermeyer Z, Abujaber S, Makar M, Stoll S, Kayden SR, Wallis LA, Reynolds TA, Acute Care Development Consortium | Bulletin of the World Health Organization | 26478615 | Bull World Health Organ | 2015 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/26478615 |
| Contributions of risk factors and medical care to cardiovascular mortality trends. | Ezzati M, Obermeyer Z, Tzoulaki I, Mayosi BM, Elliott P, Leon DA | Nature reviews. Cardiology | 26076950 | Nat Rev Cardiol | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/26076950 |
| Association between the Medicare hospice benefit and health care utilization and costs for patients with poor-prognosis cancer. | Obermeyer Z, Makar M, Abujaber S, Dominici F, Block S, Cutler DM | JAMA | 25387186 | JAMA | 2014 Nov 12 | https://www.ncbi.nlm.nih.gov/pubmed/25387186 |
| Emergency Care Use and the Medicare Hospice Benefit for Individuals with Cancer with a Poor Prognosis. | Obermeyer Z, Clarke AC, Makar M, Schuur JD, Cutler DM | Journal of the American Geriatrics Society | 26805592 | J Am Geriatr Soc | 2016 Feb | https://www.ncbi.nlm.nih.gov/pubmed/26805592 |
| Regulation of predictive analytics in medicine. | Parikh RB, Obermeyer Z, Navathe AS | Science (New York, N.Y.) | 30792287 | Science | 2019 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/30792287 |
| Estimating 1-Year Mortality for High-Risk Primary Care Patients Using the "Surprise" Question. | Lakin JR, Robinson MG, Bernacki RE, Powers BW, Block SD, Cunningham R, Obermeyer Z | JAMA internal medicine | 27695853 | JAMA Intern Med | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27695853 |
| Burden of emergency conditions and emergency care usage: new estimates from 40 countries. | Chang CY, Abujaber S, Reynolds TA, Camargo CA Jr, Obermeyer Z | Emergency medicine journal : EMJ | 27334758 | Emerg Med J | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27334758 |
| Does Machine Learning Automate Moral Hazard and Error? | Mullainathan S, Obermeyer Z | The American economic review | 28781376 | Am Econ Rev | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28781376 |
| Lost in Thought - The Limits of the Human Mind and the Future of Medicine. | Obermeyer Z, Lee TH | The New England journal of medicine | 28953443 | N Engl J Med | 2017 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/28953443 |
| Profiling stem cell states in three-dimensional biomaterial niches using high content image informatics. | Dhaliwal A, Brenner M, Wolujewicz P, Zhang Z, Mao Y, Batish M, Kohn J, Moghe PV | Acta biomaterialia | 27590870 | Acta Biomater | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27590870 |
| Alterations in the mir-15a/16-1 Loci Impairs Its Processing and Augments B-1 Expansion in De Novo Mouse Model of Chronic Lymphocytic Leukemia (CLL). | Kasar S, Underbayev C, Hassan M, Ilev I, Degheidy H, Bauer S, Marti G, Lutz C, Raveche E, Batish M | PloS one | 26959643 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26959643 |
| The long noncoding RNA SPRIGHTLY acts as an intranuclear organizing hub for pre-mRNA molecules. | Lee B, Sahoo A, Marchica J, Holzhauser E, Chen X, Li JL, Seki T, Govindarajan SS, Markey FB, Batish M, Lokhande SJ, Zhang S, Ray A, Perera RJ | Science advances | 28508063 | Sci Adv | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28508063 |
| Astrocyte-produced leukemia inhibitory factor expands the neural stem/progenitor pool following perinatal hypoxia-ischemia. | Felling RJ, Covey MV, Wolujewicz P, Batish M, Levison SW | Journal of neuroscience research | 27661001 | J Neurosci Res | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27661001 |
| Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression. | Zhang Y, Pitchiaya S, Cieślik M, Niknafs YS, Tien JC, Hosono Y, Iyer MK, Yazdani S, Subramaniam S, Shukla SK, Jiang X, Wang L, Liu TY, Uhl M, Gawronski AR, Qiao Y, Xiao L, Dhanasekaran SM, Juckette KM, Kunju LP, Cao X, Patel U, Batish M, Shukla GC, Paulsen MT, Ljungman M, Jiang H, Mehra R, Backofen R, Sahinalp CS, Freier SM, Watt AT, Guo S, Wei JT, Feng FY, Malik R, Chinnaiyan AM | Nature genetics | 29808028 | Nat Genet | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29808028 |
| Role of mir-15a/16-1 in early B cell development in a mouse model of chronic lymphocytic leukemia. | Underbayev C, Kasar S, Ruezinsky W, Degheidy H, Schneider JS, Marti G, Bauer SR, Fraidenraich D, Lightfoote MM, Parashar V, Raveche E, Batish M | Oncotarget | 27533467 | Oncotarget | 2016 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/27533467 |
| Therapeutic implications of activation of the host gene (Dleu2) promoter for miR-15a/16-1 in chronic lymphocytic leukemia. | Kasar S, Underbayev C, Yuan Y, Hanlon M, Aly S, Khan H, Chang V, Batish M, Gavrilova T, Badiane F, Degheidy H, Marti G, Raveche E | Oncogene | 23995789 | Oncogene | 2014 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/23995789 |
| Effects of Altered Excitation-Inhibition Balance on Decision Making in a Cortical Circuit Model. | Lam NH, Borduqui T, Hallak J, Roque A, Anticevic A, Krystal JH, Wang XJ, Murray JD | The Journal of neuroscience : the official journal of the Society for Neuroscience | 34887320 | J Neurosci | 2022 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/34887320 |
| Transcriptomics-informed large-scale cortical model captures topography of pharmacological neuroimaging effects of LSD. | Burt JB, Preller KH, Demirtas M, Ji JL, Krystal JH, Vollenweider FX, Anticevic A, Murray JD | eLife | 34313217 | Elife | 2021 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/34313217 |
| Understanding the role of thalamic circuits in schizophrenia neuropathology. | Anticevic A | Schizophrenia research | 27939828 | Schizophr Res | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27939828 |
| Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. | Schleifer C, Lin A, Kushan L, Ji JL, Yang G, Bearden CE, Anticevic A | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30478034 | J Neurosci | 2019 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/30478034 |
| Re-conceptualizing ASD Within a Dimensional Framework: Positive, Negative, and Cognitive Feature Clusters. | Foss-Feig JH, McPartland JC, Anticevic A, Wolf J | Journal of autism and developmental disorders | 26267330 | J Autism Dev Disord | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26267330 |
| Cognition-emotion dysinteraction in schizophrenia. | Anticevic A, Corlett PR | Frontiers in psychology | 23091464 | Front Psychol | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/23091464 |
| Linking microcircuit dysfunction to cognitive impairment: effects of disinhibition associated with schizophrenia in a cortical working memory model. | Murray JD, Anticevic A, Gancsos M, Ichinose M, Corlett PR, Krystal JH, Wang XJ | Cerebral cortex (New York, N.Y. : 1991) | 23203979 | Cereb Cortex | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/23203979 |
| Multi-task connectivity reveals flexible hubs for adaptive task control. | Cole MW, Reynolds JR, Power JD, Repovs G, Anticevic A, Braver TS | Nature neuroscience | 23892552 | Nat Neurosci | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/23892552 |
| N-methyl-D-aspartate receptor antagonist effects on prefrontal cortical connectivity better model early than chronic schizophrenia. | Anticevic A, Corlett PR, Cole MW, Savic A, Gancsos M, Tang Y, Repovs G, Murray JD, Driesen NR, Morgan PT, Xu K, Wang F, Krystal JH | Biological psychiatry | 25281999 | Biol Psychiatry | 2015 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/25281999 |
| In vivo evidence for β2 nicotinic acetylcholine receptor subunit upregulation in smokers as compared with nonsmokers with schizophrenia. | Esterlis I, Ranganathan M, Bois F, Pittman B, Picciotto MR, Shearer L, Anticevic A, Carlson J, Niciu MJ, Cosgrove KP, D'Souza DC | Biological psychiatry | 24360979 | Biol Psychiatry | 2014 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/24360979 |
| Searching for Cross-Diagnostic Convergence: Neural Mechanisms Governing Excitation and Inhibition Balance in Schizophrenia and Autism Spectrum Disorders. | Foss-Feig JH, Adkinson BD, Ji JL, Yang G, Srihari VH, McPartland JC, Krystal JH, Murray JD, Anticevic A | Biological psychiatry | 28434615 | Biol Psychiatry | 2017 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/28434615 |
| Impaired Tuning of Neural Ensembles and the Pathophysiology of Schizophrenia: A Translational and Computational Neuroscience Perspective. | Krystal JH, Anticevic A, Yang GJ, Dragoi G, Driesen NR, Wang XJ, Murray JD | Biological psychiatry | 28434616 | Biol Psychiatry | 2017 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/28434616 |
| Association of Thalamic Dysconnectivity and Conversion to Psychosis in Youth and Young Adults at Elevated Clinical Risk. | Anticevic A, Haut K, Murray JD, Repovs G, Yang GJ, Diehl C, McEwen SC, Bearden CE, Addington J, Goodyear B, Cadenhead KS, Mirzakhanian H, Cornblatt BA, Olvet D, Mathalon DH, McGlashan TH, Perkins DO, Belger A, Seidman LJ, Tsuang MT, van Erp TG, Walker EF, Hamann S, Woods SW, Qiu M, Cannon TD | JAMA psychiatry | 26267151 | JAMA Psychiatry | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/26267151 |
| Bridging Levels of Understanding in Schizophrenia Through Computational Modeling. | Anticevic A, Murray JD, Barch DM | Clinical psychological science : a journal of the Association for Psychological Science | 25960938 | Clin Psychol Sci | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25960938 |
| The role of default network deactivation in cognition and disease. | Anticevic A, Cole MW, Murray JD, Corlett PR, Wang XJ, Krystal JH | Trends in cognitive sciences | 23142417 | Trends Cogn Sci | 2012 Dec | https://www.ncbi.nlm.nih.gov/pubmed/23142417 |
| Global connectivity of prefrontal cortex predicts cognitive control and intelligence. | Cole MW, Yarkoni T, Repovs G, Anticevic A, Braver TS | The Journal of neuroscience : the official journal of the Society for Neuroscience | 22745498 | J Neurosci | 2012 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/22745498 |
| Ketamine induces multiple individually distinct whole-brain functional connectivity signatures. | Moujaes F, Ji JL, Rahmati M, Burt JB, Schleifer C, Adkinson BD, Savic A, Santamauro N, Tamayo Z, Diehl C, Kolobaric A, Flynn M, Rieser N, Fonteneau C, Camarro T, Xu J, Cho Y, Repovs G, Fineberg SK, Morgan PT, Seifritz E, Vollenweider FX, Krystal JH, Murray JD, Preller KH, Anticevic A | eLife | 38629811 | Elife | 2024 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/38629811 |
| Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks. | Purg Suljic N, Kraljic A, Rahmati M, Cho YT, Slana Ozimic A, Murray JD, Anticevic A, Repovs G | bioRxiv : the preprint server for biology | 37662268 | bioRxiv | 2024 Jul 31 | https://www.ncbi.nlm.nih.gov/pubmed/37662268 |
| Characterizing thalamo-cortical disturbances in schizophrenia and bipolar illness. | Anticevic A, Cole MW, Repovs G, Murray JD, Brumbaugh MS, Winkler AM, Savic A, Krystal JH, Pearlson GD, Glahn DC | Cerebral cortex (New York, N.Y. : 1991) | 23825317 | Cereb Cortex | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/23825317 |
| Amygdala connectivity differs among chronic, early course, and individuals at risk for developing schizophrenia. | Anticevic A, Tang Y, Cho YT, Repovs G, Cole MW, Savic A, Wang F, Krystal JH, Xu K | Schizophrenia bulletin | 24366718 | Schizophr Bull | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/24366718 |
| Schizophrenia Exhibits Bi-directional Brain-Wide Alterations in Cortico-Striato-Cerebellar Circuits. | Ji JL, Diehl C, Schleifer C, Tamminga CA, Keshavan MS, Sweeney JA, Clementz BA, Hill SK, Pearlson G, Yang G, Creatura G, Krystal JH, Repovs G, Murray J, Winkler A, Anticevic A | Cerebral cortex (New York, N.Y. : 1991) | 31157363 | Cereb Cortex | 2019 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/31157363 |
| Schizophrenia is associated with a pattern of spatial working memory deficits consistent with cortical disinhibition. | Starc M, Murray JD, Santamauro N, Savic A, Diehl C, Cho YT, Srihari V, Morgan PT, Krystal JH, Wang XJ, Repovs G, Anticevic A | Schizophrenia research | 27745755 | Schizophr Res | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/27745755 |
| Altered global brain signal in schizophrenia. | Yang GJ, Murray JD, Repovs G, Cole MW, Savic A, Glasser MF, Pittenger C, Krystal JH, Wang XJ, Pearlson GD, Glahn DC, Anticevic A | Proceedings of the National Academy of Sciences of the United States of America | 24799682 | Proc Natl Acad Sci U S A | 2014 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/24799682 |
| Connectivity, pharmacology, and computation: toward a mechanistic understanding of neural system dysfunction in schizophrenia. | Anticevic A, Cole MW, Repovs G, Savic A, Driesen NR, Yang G, Cho YT, Murray JD, Glahn DC, Wang XJ, Krystal JH | Frontiers in psychiatry | 24399974 | Front Psychiatry | 2013 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/24399974 |
| Electrophysiological Studies of Reception of Facial Communication in Autism Spectrum Disorder and Schizophrenia. | Levy EJ, Foss-Feig J, Isenstein EL, Srihari V, Anticevic A, Naples AJ, McPartland JC | Review journal of autism and developmental disorders | 36568688 | Rev J Autism Dev Disord | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36568688 |
| Reward and loss incentives improve spatial working memory by shaping trial-by-trial posterior frontoparietal signals. | Cho YT, Moujaes F, Schleifer CH, Starc M, Ji JL, Santamauro N, Adkinson B, Kolobaric A, Flynn M, Krystal JH, Murray JD, Repovs G, Anticevic A | NeuroImage | 35346841 | Neuroimage | 2022 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/35346841 |
| Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks. | Purg Suljič N, Kraljič A, Rahmati M, Cho YT, Slana Ozimič A, Murray JD, Anticevic A, Repovš G | Cerebral cortex (New York, N.Y. : 1991) | 39214852 | Cereb Cortex | 2024 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/39214852 |
| Unique Functional Neuroimaging Signatures of Genetic Versus Clinical High Risk for Psychosis. | Schleifer CH, Chang SE, Amir CM, O'Hora KP, Fung H, Kang JWD, Kushan-Wells L, Daly E, Di Fabio F, Frascarelli M, Gudbrandsen M, Kates WR, Murphy D, Addington J, Anticevic A, Cadenhead KS, Cannon TD, Cornblatt BA, Keshavan M, Mathalon DH, Perkins DO, Stone WS, Walker E, Woods SW, Uddin LQ, Kumar K, Hoftman GD, Bearden CE | Biological psychiatry | 39181389 | Biol Psychiatry | 2025 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/39181389 |
| Ventral anterior cingulate connectivity distinguished nonpsychotic bipolar illness from psychotic bipolar disorder and schizophrenia. | Anticevic A, Savic A, Repovs G, Yang G, McKay DR, Sprooten E, Knowles EE, Krystal JH, Pearlson GD, Glahn DC | Schizophrenia bulletin | 24782562 | Schizophr Bull | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/24782562 |
| Global resting-state functional magnetic resonance imaging analysis identifies frontal cortex, striatal, and cerebellar dysconnectivity in obsessive-compulsive disorder. | Anticevic A, Hu S, Zhang S, Savic A, Billingslea E, Wasylink S, Repovs G, Cole MW, Bednarski S, Krystal JH, Bloch MH, Li CS, Pittenger C | Biological psychiatry | 24314349 | Biol Psychiatry | 2014 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/24314349 |
| Relationship of resting brain hyperconnectivity and schizophrenia-like symptoms produced by the NMDA receptor antagonist ketamine in humans. | Driesen NR, McCarthy G, Bhagwagar Z, Bloch M, Calhoun V, D'Souza DC, Gueorguieva R, He G, Ramachandran R, Suckow RF, Anticevic A, Morgan PT, Krystal JH | Molecular psychiatry | 23337947 | Mol Psychiatry | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23337947 |
| Early-course unmedicated schizophrenia patients exhibit elevated prefrontal connectivity associated with longitudinal change. | Anticevic A, Hu X, Xiao Y, Hu J, Li F, Bi F, Cole MW, Savic A, Yang GJ, Repovs G, Murray JD, Wang XJ, Huang X, Lui S, Krystal JH, Gong Q | The Journal of neuroscience : the official journal of the Society for Neuroscience | 25568120 | J Neurosci | 2015 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/25568120 |
| Rebalancing Altered Computations: Considering the Role of Neural Excitation and Inhibition Balance Across the Psychiatric Spectrum. | Anticevic A, Murray JD | Biological psychiatry | 28434614 | Biol Psychiatry | 2017 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/28434614 |
| Toward understanding thalamocortical dysfunction in schizophrenia through computational models of neural circuit dynamics. | Murray JD, Anticevic A | Schizophrenia research | 27784534 | Schizophr Res | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27784534 |
| Mapping the human brain's cortical-subcortical functional network organization. | Ji JL, Spronk M, Kulkarni K, Repovš G, Anticevic A, Cole MW | NeuroImage | 30291974 | Neuroimage | 2019 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/30291974 |
| Developmentally divergent sexual dimorphism in the cortico-striatal-thalamic-cortical psychosis risk pathway. | Jacobs GR, Ameis SH, Ji JL, Viviano JD, Dickie EW, Wheeler AL, Stojanovski S, Anticevic A, Voineskos AN | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 31060043 | Neuropsychopharmacology | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31060043 |
| Effects of reward on spatial working memory in schizophrenia. | Cho YT, Lam NH, Starc M, Santamauro N, Savic A, Diehl CK, Schleifer CH, Moujaes F, Srihari VH, Repovs G, Murray JD, Anticevic A | Journal of abnormal psychology | 30335439 | J Abnorm Psychol | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30335439 |
| Changes in global and thalamic brain connectivity in LSD-induced altered states of consciousness are attributable to the 5-HT2A receptor. | Preller KH, Burt JB, Ji JL, Schleifer CH, Adkinson BD, Stämpfli P, Seifritz E, Repovs G, Krystal JH, Murray JD, Vollenweider FX, Anticevic A | eLife | 30355445 | Elife | 2018 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/30355445 |
| Distinct and overlapping sarcoma subtypes initiated from muscle stem and progenitor cells. | Blum JM, Añó L, Li Z, Van Mater D, Bennett BD, Sachdeva M, Lagutina I, Zhang M, Mito JK, Dodd LG, Cardona DM, Dodd RD, Williams N, Ma Y, Lepper C, Linardic CM, Mukherjee S, Grosveld GC, Fan CM, Kirsch DG | Cell reports | 24239359 | Cell Rep | 2013 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/24239359 |
| A series of Cre-ER(T2) drivers for manipulation of the skeletal muscle lineage. | Southard S, Low S, Li L, Rozo M, Harvey T, Fan CM, Lepper C | Genesis (New York, N.Y. : 2000) | 24844572 | Genesis | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/24844572 |
| Myofiber-specific TEAD1 overexpression drives satellite cell hyperplasia and counters pathological effects of dystrophin deficiency. | Southard S, Kim JR, Low S, Tsika RW, Lepper C | eLife | 27725085 | Elife | 2016 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/27725085 |
| The satellite cell builds its nest under Notch's guidance. | Lepper C, Low S, Partridge TA | Cell stem cell | 23040471 | Cell Stem Cell | 2012 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/23040471 |
| Myf5-positive satellite cells contribute to Pax7-dependent long-term maintenance of adult muscle stem cells. | Günther S, Kim J, Kostin S, Lepper C, Fan CM, Braun T | Cell stem cell | 23933088 | Cell Stem Cell | 2013 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/23933088 |
| Role of satellite cells versus myofibers in muscle hypertrophy induced by inhibition of the myostatin/activin signaling pathway. | Lee SJ, Huynh TV, Lee YS, Sebald SM, Wilcox-Adelman SA, Iwamori N, Lepper C, Matzuk MM, Fan CM | Proceedings of the National Academy of Sciences of the United States of America | 22869749 | Proc Natl Acad Sci U S A | 2012 Aug 28 | https://www.ncbi.nlm.nih.gov/pubmed/22869749 |
| 13C- and 15N-Labeling Strategies Combined with Mass Spectrometry Comprehensively Quantify Phospholipid Dynamics in C. elegans. | Dancy BC, Chen SW, Drechsler R, Gafken PR, Olsen CP | PloS one | 26528916 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26528916 |
| DAF-16 and TCER-1 Facilitate Adaptation to Germline Loss by Restoring Lipid Homeostasis and Repressing Reproductive Physiology in C. elegans. | Amrit FR, Steenkiste EM, Ratnappan R, Chen SW, McClendon TB, Kostka D, Yanowitz J, Olsen CP, Ghazi A | PLoS genetics | 26862916 | PLoS Genet | 2016 Feb | https://www.ncbi.nlm.nih.gov/pubmed/26862916 |
| Germline signals deploy NHR-49 to modulate fatty-acid β-oxidation and desaturation in somatic tissues of C. elegans. | Ratnappan R, Amrit FR, Chen SW, Gill H, Holden K, Ward J, Yamamoto KR, Olsen CP, Ghazi A | PLoS genetics | 25474470 | PLoS Genet | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/25474470 |
| HPLC-Based Mass Spectrometry Characterizes the Phospholipid Alterations in Ether-Linked Lipid Deficiency Models Following Oxidative Stress. | Drechsler R, Chen SW, Dancy BC, Mehrabkhani L, Olsen CP | PloS one | 27893806 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27893806 |
| Transaldolase inhibition impairs mitochondrial respiration and induces a starvation-like longevity response in Caenorhabditis elegans. | Bennett CF, Kwon JJ, Chen C, Russell J, Acosta K, Burnaevskiy N, Crane MM, Bitto A, Vander Wende H, Simko M, Pineda V, Rossner R, Wasko BM, Choi H, Chen S, Park S, Jafari G, Sands B, Perez Olsen C, Mendenhall AR, Morgan PG, Kaeberlein M | PLoS genetics | 28355222 | PLoS Genet | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28355222 |
| Bringing diffuse X-ray scattering into focus. | Wall ME, Wolff AM, Fraser JS | Current opinion in structural biology | 29455056 | Curr Opin Struct Biol | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29455056 |
| High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. | Thomaston JL, Alfonso-Prieto M, Woldeyes RA, Fraser JS, Klein ML, Fiorin G, DeGrado WF | Proceedings of the National Academy of Sciences of the United States of America | 26578770 | Proc Natl Acad Sci U S A | 2015 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/26578770 |
| One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. | Fischer M, Shoichet BK, Fraser JS | Chembiochem : a European journal of chemical biology | 26032594 | Chembiochem | 2015 Jul 27 | https://www.ncbi.nlm.nih.gov/pubmed/26032594 |
| Automated identification of functional dynamic contact networks from X-ray crystallography. | van den Bedem H, Bhabha G, Yang K, Wright PE, Fraser JS | Nature methods | 23913260 | Nat Methods | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/23913260 |
| Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder. | Dellus-Gur E, Elias M, Caselli E, Prati F, Salverda ML, de Visser JA, Fraser JS, Tawfik DS | Journal of molecular biology | 26004540 | J Mol Biol | 2015 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/26004540 |
| Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering. | Wall ME, Van Benschoten AH, Sauter NK, Adams PD, Fraser JS, Terwilliger TC | Proceedings of the National Academy of Sciences of the United States of America | 25453071 | Proc Natl Acad Sci U S A | 2014 Dec 16 | https://www.ncbi.nlm.nih.gov/pubmed/25453071 |
| From systems to structure: bridging networks and mechanism. | Fraser JS, Gross JD, Krogan NJ | Molecular cell | 23352243 | Mol Cell | 2013 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/23352243 |
| From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. | Braberg H, Jin H, Moehle EA, Chan YA, Wang S, Shales M, Benschop JJ, Morris JH, Qiu C, Hu F, Tang LK, Fraser JS, Holstege FC, Hieter P, Guthrie C, Kaplan CD, Krogan NJ | Cell | 23932120 | Cell | 2013 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/23932120 |
| CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. | Cimermancic P, Weinkam P, Rettenmaier TJ, Bichmann L, Keedy DA, Woldeyes RA, Schneidman-Duhovny D, Demerdash ON, Mitchell JC, Wells JA, Fraser JS, Sali A | Journal of molecular biology | 26854760 | J Mol Biol | 2016 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/26854760 |
| Conformational variation of proteins at room temperature is not dominated by radiation damage. | Russi S, González A, Kenner LR, Keedy DA, Fraser JS, van den Bedem H | Journal of synchrotron radiation | 28009548 | J Synchrotron Radiat | 2017 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/28009548 |
| XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction. | Thomaston JL, Woldeyes RA, Nakane T, Yamashita A, Tanaka T, Koiwai K, Brewster AS, Barad BA, Chen Y, Lemmin T, Uervirojnangkoorn M, Arima T, Kobayashi J, Masuda T, Suzuki M, Sugahara M, Sauter NK, Tanaka R, Nureki O, Tono K, Joti Y, Nango E, Iwata S, Yumoto F, Fraser JS, DeGrado WF | Proceedings of the National Academy of Sciences of the United States of America | 28835537 | Proc Natl Acad Sci U S A | 2017 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/28835537 |
| CheShift-2 resolves a local inconsistency between two X-ray crystal structures. | Vila JA, Sue SC, Fraser JS, Scheraga HA, Dyson HJ | Journal of biomolecular NMR | 22945426 | J Biomol NMR | 2012 Oct | https://www.ncbi.nlm.nih.gov/pubmed/22945426 |
| Systematic functional prioritization of protein posttranslational modifications. | Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ | Cell | 22817900 | Cell | 2012 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/22817900 |
| E pluribus unum, no more: from one crystal, many conformations. | Woldeyes RA, Sivak DA, Fraser JS | Current opinion in structural biology | 25113271 | Curr Opin Struct Biol | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25113271 |
| Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting. | Mavor D, Barlow K, Thompson S, Barad BA, Bonny AR, Cario CL, Gaskins G, Liu Z, Deming L, Axen SD, Caceres E, Chen W, Cuesta A, Gate RE, Green EM, Hulce KR, Ji W, Kenner LR, Mensa B, Morinishi LS, Moss SM, Mravic M, Muir RK, Niekamp S, Nnadi CI, Palovcak E, Poss EM, Ross TD, Salcedo EC, See SK, Subramaniam M, Wong AW, Li J, Thorn KS, Conchúir SÓ, Roscoe BP, Chow ED, DeRisi JL, Kortemme T, Bolon DN, Fraser JS | eLife | 27111525 | Elife | 2016 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/27111525 |
| Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. | Biel JT, Thompson MC, Cunningham CN, Corn JE, Fraser JS | Structure (London, England : 1993) | 28416112 | Structure | 2017 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/28416112 |
| Diffuse X-ray scattering to model protein motions. | Wall ME, Adams PD, Fraser JS, Sauter NK | Structure (London, England : 1993) | 24507780 | Structure | 2014 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/24507780 |
| Flexible backbone sampling methods to model and design protein alternative conformations. | Ollikainen N, Smith CA, Fraser JS, Kortemme T | Methods in enzymology | 23422426 | Methods Enzymol | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23422426 |
| Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine. | Williams BB, Van Benschoten AH, Cimermancic P, Donia MS, Zimmermann M, Taketani M, Ishihara A, Kashyap PC, Fraser JS, Fischbach MA | Cell host & microbe | 25263219 | Cell Host Microbe | 2014 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/25263219 |
| Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. | Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, Brunger AT, Soltis SM, Lemke H, Gonzalez A, Sauter NK, Cohen AE, van den Bedem H, Thorne RE, Fraser JS | eLife | 26422513 | Elife | 2015 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/26422513 |
| Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. | Van Benschoten AH, Afonine PV, Terwilliger TC, Wall ME, Jackson CJ, Sauter NK, Adams PD, Urzhumtsev A, Fraser JS | Acta crystallographica. Section D, Biological crystallography | 26249347 | Acta Crystallogr D Biol Crystallogr | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26249347 |
| From deep TLS validation to ensembles of atomic models built from elemental motions. | Urzhumtsev A, Afonine PV, Van Benschoten AH, Fraser JS, Adams PD | Acta crystallographica. Section D, Biological crystallography | 26249348 | Acta Crystallogr D Biol Crystallogr | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26249348 |
| Keep on moving: discovering and perturbing the conformational dynamics of enzymes. | Bhabha G, Biel JT, Fraser JS | Accounts of chemical research | 25539415 | Acc Chem Res | 2015 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/25539415 |
| EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. | Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS | Nature methods | 26280328 | Nat Methods | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26280328 |
| Protein structural ensembles are revealed by redefining X-ray electron density noise. | Lang PT, Holton JM, Fraser JS, Alber T | Proceedings of the National Academy of Sciences of the United States of America | 24363322 | Proc Natl Acad Sci U S A | 2014 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/24363322 |
| Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR. | Fenwick RB, van den Bedem H, Fraser JS, Wright PE | Proceedings of the National Academy of Sciences of the United States of America | 24474795 | Proc Natl Acad Sci U S A | 2014 Jan 28 | https://www.ncbi.nlm.nih.gov/pubmed/24474795 |
| Lineage-Specific Viral Hijacking of Non-canonical E3 Ubiquitin Ligase Cofactors in the Evolution of Vif Anti-APOBEC3 Activity. | Kane JR, Stanley DJ, Hultquist JF, Johnson JR, Mietrach N, Binning JM, Jónsson SR, Barelier S, Newton BW, Johnson TL, Franks-Skiba KE, Li M, Brown WL, Gunnarsson HI, Adalbjornsdóttir A, Fraser JS, Harris RS, Andrésdóttir V, Gross JD, Krogan NJ | Cell reports | 25981045 | Cell Rep | 2015 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/25981045 |
| Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit. | Keedy DA, Fraser JS, van den Bedem H | PLoS computational biology | 26506617 | PLoS Comput Biol | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26506617 |
| Integrative, dynamic structural biology at atomic resolution--it's about time. | van den Bedem H, Fraser JS | Nature methods | 25825836 | Nat Methods | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25825836 |
| Measuring and modeling diffuse scattering in protein X-ray crystallography. | Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME | Proceedings of the National Academy of Sciences of the United States of America | 27035972 | Proc Natl Acad Sci U S A | 2016 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/27035972 |
| Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. | Fischer M, Coleman RG, Fraser JS, Shoichet BK | Nature chemistry | 24950326 | Nat Chem | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24950326 |
| Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR. | Keedy DA, van den Bedem H, Sivak DA, Petsko GA, Ringe D, Wilson MA, Fraser JS | Structure (London, England : 1993) | 24882744 | Structure | 2014 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/24882744 |
| Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance. | Mavor D, Barlow KA, Asarnow D, Birman Y, Britain D, Chen W, Green EM, Kenner LR, Mensa B, Morinishi LS, Nelson CA, Poss EM, Suresh P, Tian R, Arhar T, Ary BE, Bauer DP, Bergman ID, Brunetti RM, Chio CM, Dai SA, Dickinson MS, Elledge SK, Helsell CVM, Hendel NL, Kang E, Kern N, Khoroshkin MS, Kirkemo LL, Lewis GR, Lou K, Marin WM, Maxwell AM, McTigue PF, Myers-Turnbull D, Nagy TL, Natale AM, Oltion K, Pourmal S, Reder GK, Rettko NJ, Rohweder PJ, Schwarz DMC, Tan SK, Thomas PV, Tibble RW, Town JP, Tsai MK, Ugur FS, Wassarman DR, Wolff AM, Wu TS, Bogdanoff D, Li J, Thorn KS, O'Conchúir S, Swaney DL, Chow ED, Madhani HD, Redding S, Bolon DN, Kortemme T, DeRisi JL, Kampmann M, Fraser JS | Biology open | 30037883 | Biol Open | 2018 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/30037883 |
| Genetic interaction mapping informs integrative structure determination of protein complexes. | Braberg H, Echeverria I, Bohn S, Cimermancic P, Shiver A, Alexander R, Xu J, Shales M, Dronamraju R, Jiang S, Dwivedi G, Bogdanoff D, Chaung KK, Hüttenhain R, Wang S, Mavor D, Pellarin R, Schneidman D, Bader JS, Fraser JS, Morris J, Haber JE, Strahl BD, Gross CA, Dai J, Boeke JD, Sali A, Krogan NJ | Science (New York, N.Y.) | 33303586 | Science | 2020 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/33303586 |
| An Engineered Cas-Transposon System for Programmable and Site-Directed DNA Transpositions. | Chen SP, Wang HH | The CRISPR journal | 31742433 | CRISPR J | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31742433 |
| Genome and sequence determinants governing the expression of horizontally acquired DNA in bacteria. | Gomes ALC, Johns NI, Yang A, Velez-Cortes F, Smillie CS, Smith MB, Alm EJ, Wang HH | The ISME journal | 32514119 | ISME J | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32514119 |
| Programmable CRISPR-Cas transcriptional activation in bacteria. | Ho HI, Fang JR, Cheung J, Wang HH | Molecular systems biology | 32657546 | Mol Syst Biol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32657546 |
| Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution. | Utrilla J, O'Brien EJ, Chen K, McCloskey D, Cheung J, Wang H, Armenta-Medina D, Feist AM, Palsson BO | Cell systems | 27135538 | Cell Syst | 2016 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/27135538 |
| Principles for designing synthetic microbial communities. | Johns NI, Blazejewski T, Gomes AL, Wang HH | Current opinion in microbiology | 27084981 | Curr Opin Microbiol | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27084981 |
| An Economic Framework of Microbial Trade. | Tasoff J, Mee MT, Wang HH | PloS one | 26222307 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26222307 |
| Proton Pump Inhibitors Alter Specific Taxa in the Human Gastrointestinal Microbiome: A Crossover Trial. | Freedberg DE, Toussaint NC, Chen SP, Ratner AJ, Whittier S, Wang TC, Wang HH, Abrams JA | Gastroenterology | 26164495 | Gastroenterology | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26164495 |
| Syntrophic exchange in synthetic microbial communities. | Mee MT, Collins JJ, Church GM, Wang HH | Proceedings of the National Academy of Sciences of the United States of America | 24778240 | Proc Natl Acad Sci U S A | 2014 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/24778240 |
| Genomically recoded organisms expand biological functions. | Lajoie MJ, Rovner AJ, Goodman DB, Aerni HR, Haimovich AD, Kuznetsov G, Mercer JA, Wang HH, Carr PA, Mosberg JA, Rohland N, Schultz PG, Jacobson JM, Rinehart J, Church GM, Isaacs FJ | Science (New York, N.Y.) | 24136966 | Science | 2013 Oct 18 | https://www.ncbi.nlm.nih.gov/pubmed/24136966 |
| A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions. | Stockman VB, Ghamsari L, Lasso G, Honig B, Shapira SD, Wang HH | PloS one | 27936040 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27936040 |
| Genome-scale promoter engineering by coselection MAGE. | Wang HH, Kim H, Cong L, Jeong J, Bang D, Church GM | Nature methods | 22484848 | Nat Methods | 2012 Jun | https://www.ncbi.nlm.nih.gov/pubmed/22484848 |
| Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides. | Bonde MT, Kosuri S, Genee HJ, Sarup-Lytzen K, Church GM, Sommer MO, Wang HH | ACS synthetic biology | 24856730 | ACS Synth Biol | 2015 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/24856730 |
| MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering. | Bonde MT, Klausen MS, Anderson MV, Wallin AI, Wang HH, Sommer MO | Nucleic acids research | 24838561 | Nucleic Acids Res | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24838561 |
| Programming cells by multiplex genome engineering and accelerated evolution. | Wang HH, Isaacs FJ, Carr PA, Sun ZZ, Xu G, Forest CR, Church GM | Nature | 19633652 | Nature | 2009 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/19633652 |
| Engineering ecosystems and synthetic ecologies. | Mee MT, Wang HH | Molecular bioSystems | 22722235 | Mol Biosyst | 2012 Oct | https://www.ncbi.nlm.nih.gov/pubmed/22722235 |
| Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection. | Carr PA, Wang HH, Sterling B, Isaacs FJ, Lajoie MJ, Xu G, Church GM, Jacobson JM | Nucleic acids research | 22638574 | Nucleic Acids Res | 2012 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/22638574 |
| RNA Structural Determinants of Optimal Codons Revealed by MAGE-Seq. | Kelsic ED, Chung H, Cohen N, Park J, Wang HH, Kishony R | Cell systems | 28009265 | Cell Syst | 2016 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/28009265 |
| Systematic and synthetic approaches to rewire regulatory networks. | Park J, Wang HH | Current opinion in systems biology | 30637352 | Curr Opin Syst Biol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30637352 |
| Multiplex recording of cellular events over time on CRISPR biological tape. | Sheth RU, Yim SS, Wu FL, Wang HH | Science (New York, N.Y.) | 29170279 | Science | 2017 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/29170279 |
| Improving lambda red genome engineering in Escherichia coli via rational removal of endogenous nucleases. | Mosberg JA, Gregg CJ, Lajoie MJ, Wang HH, Church GM | PloS one | 22957093 | PLoS One | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22957093 |
| The Role of Genome Accessibility in Transcription Factor Binding in Bacteria. | Gomes AL, Wang HH | PLoS computational biology | 27104615 | PLoS Comput Biol | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/27104615 |
| Metagenomic engineering of the mammalian gut microbiome in situ. | Ronda C, Chen SP, Cabral V, Yaung SJ, Wang HH | Nature methods | 30643213 | Nat Methods | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30643213 |
| Genome-scale engineering for systems and synthetic biology. | Esvelt KM, Wang HH | Molecular systems biology | 23340847 | Mol Syst Biol | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23340847 |
| Transfer of noncoding DNA drives regulatory rewiring in bacteria. | Oren Y, Smith MB, Johns NI, Kaplan Zeevi M, Biran D, Ron EZ, Corander J, Wang HH, Alm EJ, Pupko T | Proceedings of the National Academy of Sciences of the United States of America | 25313052 | Proc Natl Acad Sci U S A | 2014 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/25313052 |
| Improving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics. | Yaung SJ, Deng L, Li N, Braff JL, Church GM, Bry L, Wang HH, Gerber GK | Molecular systems biology | 26148351 | Mol Syst Biol | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26148351 |
| Recent progress in engineering human-associated microbiomes. | Yaung SJ, Church GM, Wang HH | Methods in molecular biology (Clifton, N.J.) | 24838875 | Methods Mol Biol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24838875 |
| Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis. | Wang HH, Huang PY, Xu G, Haas W, Marblestone A, Li J, Gygi SP, Forster AC, Jewett MC, Church GM | ACS synthetic biology | 22737598 | ACS Synth Biol | 2012 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/22737598 |
| Yeast oligo-mediated genome engineering (YOGE). | DiCarlo JE, Conley AJ, Penttilä M, Jäntti J, Wang HH, Church GM | ACS synthetic biology | 24160921 | ACS Synth Biol | 2013 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/24160921 |
| Manipulating Bacterial Communities by in situ Microbiome Engineering. | Sheth RU, Cabral V, Chen SP, Wang HH | Trends in genetics : TIG | 26916078 | Trends Genet | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/26916078 |
| Prediction of resistance development against drug combinations by collateral responses to component drugs. | Munck C, Gumpert HK, Wallin AI, Wang HH, Sommer MO | Science translational medicine | 25391482 | Sci Transl Med | 2014 Nov 12 | https://www.ncbi.nlm.nih.gov/pubmed/25391482 |
| Metagenomic mining of regulatory elements enables programmable species-selective gene expression. | Johns NI, Gomes ALC, Yim SS, Yang A, Blazejewski T, Smillie CS, Smith MB, Alm EJ, Kosuri S, Wang HH | Nature methods | 30052624 | Nat Methods | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/30052624 |
| National Trends in Parental Human Papillomavirus Vaccination Intentions and Reasons for Hesitancy, 2010-2015. | Hanson KE, Koch B, Bonner K, McRee AL, Basta NE | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 29596595 | Clin Infect Dis | 2018 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/29596595 |
| HPV vaccine uptake among overweight and obese US adolescents: An analysis of the National Health and Nutrition Examination Survey (NHANES) 2009-2014. | Sundaram ME, Mason SM, Basta NE | Vaccine | 27020709 | Vaccine | 2016 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/27020709 |
| Meningococcal B Vaccine during a University Outbreak. | Basta NE, Mahmoud AAF, Borrow R | The New England journal of medicine | 27797310 | N Engl J Med | 2016 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/27797310 |
| 'What have you HEARD about the HERD?' Does education about local influenza vaccination coverage and herd immunity affect willingness to vaccinate? | Logan J, Nederhoff D, Koch B, Griffith B, Wolfson J, Awan FA, Basta NE | Vaccine | 29789242 | Vaccine | 2018 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/29789242 |
| Priorities for research on meningococcal disease and the impact of serogroup A vaccination in the African meningitis belt. | Dakar discussion group on priorities for research on epidemic meningococcal disease in Africa, Altmann D, Aseffa A, Bash M, Basta N, Borrow R, Broome C, Caugant D, Clark T, Collard JM, Djingarey M, Goldblatt D, Greenwood B, Griffiths U, Hajjeh R, Hassan-King M, Hugonnet S, Kimball AM, LaForce M, MacLennan C, Maiden MC, Manigart O, Mayer L, Messonnier N, Moisi J, Moore K, Moto DD, Mueller J, Nascimento M, Obaro S, Ouedraogo R, Page AL, Perea W, Pluschke G, Preziosi MP, Sow S, Stephens D, Stuart J, Thomson M, Tiendrebeogo S, Trape JF, Vernet G | Vaccine | 23273967 | Vaccine | 2013 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/23273967 |
| Linking data and models: the importance of statistical analyses to inform models for the transmission dynamics of infections. | Pitzer VE, Basta NE | Epidemiology (Cambridge, Mass.) | 22659545 | Epidemiology | 2012 Jul | https://www.ncbi.nlm.nih.gov/pubmed/22659545 |
| Use of serological surveys to generate key insights into the changing global landscape of infectious disease. | Metcalf CJ, Farrar J, Cutts FT, Basta NE, Graham AL, Lessler J, Ferguson NM, Burke DS, Grenfell BT | Lancet (London, England) | 27059886 | Lancet | 2016 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/27059886 |
| The Diversity of Meningococcal Carriage Across the African Meningitis Belt and the Impact of Vaccination With a Group A Meningococcal Conjugate Vaccine. | MenAfriCar consortium | The Journal of infectious diseases | 25858956 | J Infect Dis | 2015 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/25858956 |
| Parental awareness of Meningococcal B vaccines and willingness to vaccinate their teens. | Basta NE, Becker AB, Li Q, Nederhoff D | Vaccine | 30587431 | Vaccine | 2019 Jan 21 | https://www.ncbi.nlm.nih.gov/pubmed/30587431 |
| Meningococcal carriage in the African meningitis belt. | MenAfriCar Consortium | Tropical medicine & international health : TM & IH | 23682910 | Trop Med Int Health | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23682910 |
| Population-Level Persistence of Immunity 2 Years After the PsA-TT Mass-Vaccination Campaign in Mali. | Basta NE, Borrow R, Berthe A, Dembélé AT, Onwuchekwa U, Townsend K, Boukary RM, Mabey L, Findlow H, Bai X, Sow SO | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 26553687 | Clin Infect Dis | 2015 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/26553687 |
| Higher Tetanus Toxoid Immunity 2 Years After PsA-TT Introduction in Mali. | Basta NE, Borrow R, Berthe A, Onwuchekwa U, Dembélé AT, Almond R, Frankland S, Patel S, Wood D, Nascimento M, Manigart O, Trotter CL, Greenwood B, Sow SO | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 26553691 | Clin Infect Dis | 2015 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/26553691 |
| Immunogenicity of a Meningococcal B Vaccine during a University Outbreak. | Basta NE, Mahmoud AA, Wolfson J, Ploss A, Heller BL, Hanna S, Johnsen P, Izzo R, Grenfell BT, Findlow J, Bai X, Borrow R | The New England journal of medicine | 27468058 | N Engl J Med | 2016 Jul 21 | https://www.ncbi.nlm.nih.gov/pubmed/27468058 |
| 4CMenB vaccine effectiveness: reasons for optimism. | Basta NE, Christensen H | Lancet (London, England) | 28100431 | Lancet | 2016 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/28100431 |
| Animal reservoir, natural and socioeconomic variations and the transmission of hemorrhagic fever with renal syndrome in Chenzhou, China, 2006-2010. | Xiao H, Tian HY, Gao LD, Liu HN, Duan LS, Basta N, Cazelles B, Li XJ, Lin XL, Wu HW, Chen BY, Yang HS, Xu B, Grenfell B | PLoS neglected tropical diseases | 24421910 | PLoS Negl Trop Dis | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24421910 |
| Methods for identifying Neisseria meningitidis carriers: a multi-center study in the African meningitis belt. | Basta NE, Stuart JM, Nascimento MC, Manigart O, Trotter C, Hassan-King M, Chandramohan D, Sow SO, Berthe A, Bedru A, Tekletsion YK, Collard JM, Jusot JF, Diallo A, Basséne H, Daugla DM, Gamougam K, Hodgson A, Forgor AA, Omotara BA, Gadzama GB, Watkins ER, Rebbetts LS, Diallo K, Weiss NS, Halloran ME, Maiden MC, Greenwood B | PloS one | 24194921 | PLoS One | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24194921 |
| Meningococcal carriage within households in the African meningitis belt: A longitudinal pilot study. | Basta NE, Berthe A, Keita M, Onwuchekwa U, Tamboura B, Traore A, Hassan-King M, Manigart O, Nascimento M, Stuart JM, Trotter C, Blake J, Carr AD, Gray SJ, Newbold LS, Deng Y, Wolfson J, Halloran ME, Greenwood B, Borrow R, Sow SO | The Journal of infection | 29197599 | J Infect | 2018 Feb | https://www.ncbi.nlm.nih.gov/pubmed/29197599 |
| Meningococcal vaccines and protein-energy undernutrition in children in the African meningitis belt. | Sundaram ME, Wolfson J, Osterholm M, Sow S, Ansah PO, Diallo A, Cusick SE | Vaccine | 33223309 | Vaccine | 2020 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/33223309 |
| Seasonal dynamics of bacterial meningitis: a time-series analysis. | Paireau J, Chen A, Broutin H, Grenfell B, Basta NE | The Lancet. Global health | 27198841 | Lancet Glob Health | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27198841 |
| Simulations for designing and interpreting intervention trials in infectious diseases. | Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, DeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela JP, Özler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M | BMC medicine | 29287587 | BMC Med | 2017 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/29287587 |
| Spliced integrated retrotransposed element (SpIRE) formation in the human genome. | Larson PA, Moldovan JB, Jasti N, Kidd JM, Beck CR, Moran JV | PLoS biology | 29505568 | PLoS Biol | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29505568 |
| Discovery and characterization of Alu repeat sequences via precise local read assembly. | Wildschutte JH, Baron A, Diroff NM, Kidd JM | Nucleic acids research | 26503250 | Nucleic Acids Res | 2015 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/26503250 |
| Rapid, Paralog-Sensitive CNV Analysis of 2457 Human Genomes Using QuicK-mer2. | Shen F, Kidd JM | Genes | 32013076 | Genes (Basel) | 2020 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/32013076 |
| Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females. | Poznik GD, Henn BM, Yee MC, Sliwerska E, Euskirchen GM, Lin AA, Snyder M, Quintana-Murci L, Kidd JM, Underhill PA, Bustamante CD | Science (New York, N.Y.) | 23908239 | Science | 2013 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/23908239 |
| Exome capture from saliva produces high quality genomic and metagenomic data. | Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, Parham P, Hoal EG, Feldman MW, Pollard KS, Wall JD, Bustamante CD, Henn BM | BMC genomics | 24708091 | BMC Genomics | 2014 Apr 4 | https://www.ncbi.nlm.nih.gov/pubmed/24708091 |
| The genomic landscape of polymorphic human nuclear mitochondrial insertions. | Dayama G, Emery SB, Kidd JM, Mills RE | Nucleic acids research | 25348406 | Nucleic Acids Res | 2014 Nov 10 | https://www.ncbi.nlm.nih.gov/pubmed/25348406 |
| A global reference for human genetic variation. | 1000 Genomes Project Consortium, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini JL, McCarthy S, McVean GA, Abecasis GR | Nature | 26432245 | Nature | 2015 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/26432245 |
| Discovery of unfixed endogenous retrovirus insertions in diverse human populations. | Wildschutte JH, Williams ZH, Montesion M, Subramanian RP, Kidd JM, Coffin JM | Proceedings of the National Academy of Sciences of the United States of America | 27001843 | Proc Natl Acad Sci U S A | 2016 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/27001843 |
| Y-Chromosome Structural Diversity in the Bonobo and Chimpanzee Lineages. | Oetjens MT, Shen F, Emery SB, Zou Z, Kidd JM | Genome biology and evolution | 27358426 | Genome Biol Evol | 2016 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/27358426 |
| Resolving complex structural genomic rearrangements using a randomized approach. | Zhao X, Emery SB, Myers B, Kidd JM, Mills RE | Genome biology | 27287201 | Genome Biol | 2016 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/27287201 |
| Transcriptome sequencing from diverse human populations reveals differentiated regulatory architecture. | Martin AR, Costa HA, Lappalainen T, Henn BM, Kidd JM, Yee MC, Grubert F, Cann HM, Snyder M, Montgomery SB, Bustamante CD | PLoS genetics | 25121757 | PLoS Genet | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/25121757 |
| Distance from sub-Saharan Africa predicts mutational load in diverse human genomes. | Henn BM, Botigué LR, Peischl S, Dupanloup I, Lipatov M, Maples BK, Martin AR, Musharoff S, Cann H, Snyder MP, Excoffier L, Kidd JM, Bustamante CD | Proceedings of the National Academy of Sciences of the United States of America | 26712023 | Proc Natl Acad Sci U S A | 2016 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/26712023 |
| Modeling Human Population Separation History Using Physically Phased Genomes. | Song S, Sliwerska E, Emery S, Kidd JM | Genetics | 28049708 | Genetics | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28049708 |
| Efficient Genome Editing in Caenorhabditis elegans with a Toolkit of Dual-Marker Selection Cassettes. | Norris AD, Kim HM, Colaiácovo MP, Calarco JA | Genetics | 26232410 | Genetics | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26232410 |
| Heritable genome editing in C. elegans via a CRISPR-Cas9 system. | Friedland AE, Tzur YB, Esvelt KM, Colaiácovo MP, Church GM, Calarco JA | Nature methods | 23817069 | Nat Methods | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23817069 |
| Heritable custom genomic modifications in Caenorhabditis elegans via a CRISPR-Cas9 system. | Tzur YB, Friedland AE, Nadarajan S, Church GM, Calarco JA, Colaiácovo MP | Genetics | 23979579 | Genetics | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23979579 |
| An Elongin-Cullin-SOCS Box Complex Regulates Stress-Induced Serotonergic Neuromodulation. | Gracida X, Dion MF, Harris G, Zhang Y, Calarco JA | Cell reports | 29241538 | Cell Rep | 2017 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/29241538 |
| Creating Genome Modifications in C. elegans Using the CRISPR/Cas9 System. | Calarco JA, Friedland AE | Methods in molecular biology (Clifton, N.J.) | 26423968 | Methods Mol Biol | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26423968 |
| Synthetic Genetic Interaction (CRISPR-SGI) Profiling in Caenorhabditis elegans. | Calarco JA, Norris AD | Bio-protocol | 29552597 | Bio Protoc | 2018 Mar 5 | https://www.ncbi.nlm.nih.gov/pubmed/29552597 |
| Regulation of Tissue-Specific Alternative Splicing: C. elegans as a Model System. | Gracida X, Norris AD, Calarco JA | Advances in experimental medicine and biology | 27256389 | Adv Exp Med Biol | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27256389 |
| Emerging Roles of Alternative Pre-mRNA Splicing Regulation in Neuronal Development and Function. | Norris AD, Calarco JA | Frontiers in neuroscience | 22936897 | Front Neurosci | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22936897 |
| CRISPR-mediated genetic interaction profiling identifies RNA binding proteins controlling metazoan fitness. | Norris AD, Gracida X, Calarco JA | eLife | 28718764 | Elife | 2017 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/28718764 |
| A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types. | Norris AD, Gao S, Norris ML, Ray D, Ramani AK, Fraser AG, Morris Q, Hughes TR, Zhen M, Calarco JA | Molecular cell | 24910101 | Mol Cell | 2014 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/24910101 |
| A self-perpetuating repressive state of a viral replication protein blocks superinfection by the same virus. | Zhang XF, Sun R, Guo Q, Zhang S, Meulia T, Halfmann R, Li D, Qu F | PLoS pathogens | 28267773 | PLoS Pathog | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28267773 |
| The UBR-1 ubiquitin ligase regulates glutamate metabolism to generate coordinated motor pattern in Caenorhabditis elegans. | Chitturi J, Hung W, Rahman AMA, Wu M, Lim MA, Calarco J, Baran R, Huang X, Dennis JW, Zhen M | PLoS genetics | 29649217 | PLoS Genet | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29649217 |
| Neuroendocrine modulation sustains the C. elegans forward motor state. | Lim MA, Chitturi J, Laskova V, Meng J, Findeis D, Wiekenberg A, Mulcahy B, Luo L, Li Y, Lu Y, Hung W, Qu Y, Ho CY, Holmyard D, Ji N, McWhirter R, Samuel AD, Miller DM, Schnabel R, Calarco JA, Zhen M | eLife | 27855782 | Elife | 2016 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/27855782 |
| Quantifying Nucleation In Vivo Reveals the Physical Basis of Prion-like Phase Behavior. | Khan T, Kandola TS, Wu J, Venkatesan S, Ketter E, Lange JJ, Gama AR, Box A, Unruh JR, Cook M, Halfmann R | Molecular cell | 30794793 | Mol Cell | 2019 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/30794793 |
| A glass menagerie of low complexity sequences. | Halfmann R | Current opinion in structural biology | 27258703 | Curr Opin Struct Biol | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27258703 |
| Prion formation by a yeast GLFG nucleoporin. | Halfmann R, Wright JR, Alberti S, Lindquist S, Rexach M | Prion | 22561191 | Prion | 2012 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/22561191 |
| Small-molecule activation of the TRAIL receptor DR5 in human cancer cells. | Wang G, Wang X, Yu H, Wei S, Williams N, Holmes DL, Halfmann R, Naidoo J, Wang L, Li L, Chen S, Harran P, Lei X, Wang X | Nature chemical biology | 23292651 | Nat Chem Biol | 2013 Feb | https://www.ncbi.nlm.nih.gov/pubmed/23292651 |
| Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering. | Close DW, Paul CD, Langan PS, Wilce MC, Traore DA, Halfmann R, Rocha RC, Waldo GS, Payne RJ, Rucker JB, Prescott M, Bradbury AR | Proteins | 25287913 | Proteins | 2015 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25287913 |
| Detecting and Characterizing Protein Self-Assembly In Vivo by Flow Cytometry. | Venkatesan S, Kandola TS, Rodríguez-Gama A, Box A, Halfmann R | Journal of visualized experiments : JoVE | 31380843 | J Vis Exp | 2019 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/31380843 |
| Quantifying Nucleation In Vivo Reveals the Physical Basis of Prion-like Phase Behavior. | Khan T, Kandola TS, Wu J, Venkatesan S, Ketter E, Lange JJ, Rodríguez Gama A, Box A, Unruh JR, Cook M, Halfmann R | Molecular cell | 29979963 | Mol Cell | 2018 Jul 5 | https://www.ncbi.nlm.nih.gov/pubmed/29979963 |
| Heritable remodeling of yeast multicellularity by an environmentally responsive prion. | Holmes DL, Lancaster AK, Lindquist S, Halfmann R | Cell | 23540696 | Cell | 2013 Mar 28 | https://www.ncbi.nlm.nih.gov/pubmed/23540696 |
| Prion-like polymerization underlies signal transduction in antiviral immune defense and inflammasome activation. | Cai X, Chen J, Xu H, Liu S, Jiang QX, Halfmann R, Chen ZJ | Cell | 24630723 | Cell | 2014 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/24630723 |
| The wtf4 meiotic driver utilizes controlled protein aggregation to generate selective cell death. | Nuckolls NL, Mok AC, Lange JJ, Yi K, Kandola TS, Hunn AM, McCroskey S, Snyder JL, Bravo Núñez MA, McClain M, McKinney SA, Wood C, Halfmann R, Zanders SE | eLife | 33108274 | Elife | 2020 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/33108274 |
| Discussion on Covariate-assisted ranking and screening for large-scale two-sample inference. | Yu G, Bien J, Witten D | Journal of the Royal Statistical Society. Series B, Statistical methodology | 31178656 | J R Stat Soc Series B Stat Methodol | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/31178656 |
| Are clusterings of multiple data views independent? | Gao LL, Bien J, Witten D | Biostatistics (Oxford, England) | 30753304 | Biostatistics | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/30753304 |
| Fast nonconvex deconvolution of calcium imaging data. | Jewell SW, Hocking TD, Fearnhead P, Witten DM | Biostatistics (Oxford, England) | 30753436 | Biostatistics | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/30753436 |
| Hypothesis testing for differentially correlated features. | Sheng E, Witten D, Zhou XH | Biostatistics (Oxford, England) | 27044327 | Biostatistics | 2016 Oct | https://www.ncbi.nlm.nih.gov/pubmed/27044327 |
| Learning Graphical Models With Hubs. | Tan KM, London P, Mohan K, Lee SI, Fazel M, Witten D | Journal of machine learning research : JMLR | 25620891 | J Mach Learn Res | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25620891 |
| Testing for a Change in Mean After Changepoint Detection. | Jewell S, Fearnhead P, Witten D | Journal of the Royal Statistical Society. Series B, Statistical methodology | 36419504 | J R Stat Soc Series B Stat Methodol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36419504 |
| MODELING MICROBIAL ABUNDANCES AND DYSBIOSIS WITH BETA-BINOMIAL REGRESSION. | Martin BD, Witten D, Willis AD | The annals of applied statistics | 32983313 | Ann Appl Stat | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32983313 |
| Massively parallel functional dissection of mammalian enhancers in vivo. | Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J | Nature biotechnology | 22371081 | Nat Biotechnol | 2012 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/22371081 |
| Nearly assumptionless screening for the mutually-exciting multivariate Hawkes process. | Chen S, Witten D, Shojaie A | Electronic journal of statistics | 28845209 | Electron J Stat | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28845209 |
| Selection and estimation for mixed graphical models. | Chen S, Witten DM, Shojaie A | Biometrika | 27625437 | Biometrika | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/27625437 |
| The cluster graphical lasso for improved estimation of Gaussian graphical models. | Tan KM, Witten D, Shojaie A | Computational statistics & data analysis | 25642008 | Comput Stat Data Anal | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25642008 |
| Network Reconstruction From High-Dimensional Ordinary Differential Equations. | Chen S, Shojaie A, Witten DM | Journal of the American Statistical Association | 29618851 | J Am Stat Assoc | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29618851 |
| SCALPEL: EXTRACTING NEURONS FROM CALCIUM IMAGING DATA. | Petersen A, Simon N, Witten D | The annals of applied statistics | 30510612 | Ann Appl Stat | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30510612 |
| Pathway Graphical Lasso. | Grechkin M, Fazel M, Witten D, Lee SI | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence | 26167394 | Proc AAAI Conf Artif Intell | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26167394 |
| On the assessment of statistical significance of three-dimensional colocalization of sets of genomic elements. | Witten DM, Noble WS | Nucleic acids research | 22266657 | Nucleic Acids Res | 2012 May | https://www.ncbi.nlm.nih.gov/pubmed/22266657 |
| Molecular signatures from omics data: from chaos to consensus. | Sung J, Wang Y, Chandrasekaran S, Witten DM, Price ND | Biotechnology journal | 22528809 | Biotechnol J | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22528809 |
| Inferring clonal composition from multiple sections of a breast cancer. | Zare H, Wang J, Hu A, Weber K, Smith J, Nickerson D, Song C, Witten D, Blau CA, Noble WS | PLoS computational biology | 25010360 | PLoS Comput Biol | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25010360 |
| Penalized unsupervised learning with outliers. | Witten DM | Statistics and its interface | 23875057 | Stat Interface | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23875057 |
| Statistical properties of convex clustering. | Tan KM, Witten D | Electronic journal of statistics | 27617051 | Electron J Stat | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/27617051 |
| A general framework for estimating the relative pathogenicity of human genetic variants. | Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J | Nature genetics | 24487276 | Nat Genet | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24487276 |
| Node-Based Learning of Multiple Gaussian Graphical Models. | Mohan K, London P, Fazel M, Witten D, Lee SI | Journal of machine learning research : JMLR | 25309137 | J Mach Learn Res | 2014 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/25309137 |
| Multi-scale network regression for brain-phenotype associations. | Xia CH, Ma Z, Cui Z, Bzdok D, Thirion B, Bassett DS, Satterthwaite TD, Shinohara RT, Witten DM | Human brain mapping | 32216125 | Hum Brain Mapp | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32216125 |
| Replicates in high dimensions, with applications to latent variable graphical models. | Tan KM, Ning Y, Witten DM, Liu H | Biometrika | 28736452 | Biometrika | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28736452 |
| Structured Learning of Gaussian Graphical Models. | Mohan K, Chung MJ, Han S, Witten D, Lee SI, Fazel M | Advances in neural information processing systems | 25360066 | Adv Neural Inf Process Syst | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/25360066 |
| Adaptive nonparametric regression with the K-nearest neighbour fused lasso. | Madrid Padilla OH, Sharpnack J, Chen Y, Witten DM | Biometrika | 32454528 | Biometrika | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32454528 |
| Testing for association in multiview network data. | Gao LL, Witten D, Bien J | Biometrics | 33792914 | Biometrics | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33792914 |
| Controlling costs: Feature selection on a budget. | Yu G, Witten D, Bien J | Stat | 38250253 | Stat | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38250253 |
| The Cluster Elastic Net for High-Dimensional Regression With Unknown Variable Grouping. | Witten DM, Shojaie A, Zhang F | Technometrics : a journal of statistics for the physical, chemical, and engineering sciences | 24817772 | Technometrics | 2014 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/24817772 |
| The joint graphical lasso for inverse covariance estimation across multiple classes. | Danaher P, Wang P, Witten DM | Journal of the Royal Statistical Society. Series B, Statistical methodology | 24817823 | J R Stat Soc Series B Stat Methodol | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24817823 |
| Graph Estimation with Joint Additive Models. | Voorman A, Shojaie A, Witten D | Biometrika | 25013234 | Biometrika | 2014 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/25013234 |
| Sparse Biclustering of Transposable Data. | Tan KM, Witten DM | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 25364221 | J Comput Graph Stat | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25364221 |
| Data-adaptive additive modeling. | Petersen A, Witten D | Statistics in medicine | 30010200 | Stat Med | 2019 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/30010200 |
| Discussion of 'Gene hunting with hidden Markov model knockoffs'. | Jewell SW, Witten DM | Biometrika | 30799876 | Biometrika | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30799876 |
| EXACT SPIKE TRAIN INFERENCE VIA ℓ(0) OPTIMIZATION. | Jewell S, Witten D | The annals of applied statistics | 30627301 | Ann Appl Stat | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30627301 |
| A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex. | de Vries SEJ, Lecoq JA, Buice MA, Groblewski PA, Ocker GK, Oliver M, Feng D, Cain N, Ledochowitsch P, Millman D, Roll K, Garrett M, Keenan T, Kuan L, Mihalas S, Olsen S, Thompson C, Wakeman W, Waters J, Williams D, Barber C, Berbesque N, Blanchard B, Bowles N, Caldejon SD, Casal L, Cho A, Cross S, Dang C, Dolbeare T, Edwards M, Galbraith J, Gaudreault N, Gilbert TL, Griffin F, Hargrave P, Howard R, Huang L, Jewell S, Keller N, Knoblich U, Larkin JD, Larsen R, Lau C, Lee E, Lee F, Leon A, Li L, Long F, Luviano J, Mace K, Nguyen T, Perkins J, Robertson M, Seid S, Shea-Brown E, Shi J, Sjoquist N, Slaughterbeck C, Sullivan D, Valenza R, White C, Williford A, Witten DM, Zhuang J, Zeng H, Farrell C, Ng L, Bernard A, Phillips JW, Reid RC, Koch C | Nature neuroscience | 31844315 | Nat Neurosci | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31844315 |
| Flexible and Interpretable Models for Survival Data. | Wu J, Witten D | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 32704224 | J Comput Graph Stat | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/32704224 |
| Loss of MeCP2 in the rat models regression, impaired sociability and transcriptional deficits of Rett syndrome. | Veeraragavan S, Wan YW, Connolly DR, Hamilton SM, Ward CS, Soriano S, Pitcher MR, McGraw CM, Huang SG, Green JR, Yuva LA, Liang AJ, Neul JL, Yasui DH, LaSalle JM, Liu Z, Paylor R, Samaco RC | Human molecular genetics | 27365498 | Hum Mol Genet | 2016 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/27365498 |
| Genetic rodent models of brain disorders: Perspectives on experimental approaches and therapeutic strategies. | McGraw CM, Ward CS, Samaco RC | American journal of medical genetics. Part C, Seminars in medical genetics | 28910526 | Am J Med Genet C Semin Med Genet | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28910526 |
| Loss of MeCP2 Causes Urological Dysfunction and Contributes to Death by Kidney Failure in Mouse Models of Rett Syndrome. | Ward CS, Huang TW, Herrera JA, Samaco RC, Pitcher MR, Herron A, Skinner SA, Kaufmann WE, Glaze DG, Percy AK, Neul JL | PloS one | 27828991 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27828991 |
| Combinatorial therapy discovery using mixed integer linear programming. | Pang K, Wan YW, Choi WT, Donehower LA, Sun J, Pant D, Liu Z | Bioinformatics (Oxford, England) | 24463180 | Bioinformatics | 2014 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/24463180 |
| Forniceal deep brain stimulation rescues hippocampal memory in Rett syndrome mice. | Hao S, Tang B, Wu Z, Ure K, Sun Y, Tao H, Gao Y, Patel AJ, Curry DJ, Samaco RC, Zoghbi HY, Tang J | Nature | 26469053 | Nature | 2015 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/26469053 |
| Otud7a Knockout Mice Recapitulate Many Neurological Features of 15q13.3 Microdeletion Syndrome. | Yin J, Chen W, Chao ES, Soriano S, Wang L, Wang W, Cummock SE, Tao H, Pang K, Liu Z, Pereira FA, Samaco RC, Zoghbi HY, Xue M, Schaaf CP | American journal of human genetics | 29395075 | Am J Hum Genet | 2018 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/29395075 |
