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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Author Journal Name PubMedID Journal Abbreviation Publication Date PubMedLink
The mitochondrial multi-omic response to exercise training across rat tissues. Amar D, Gay NR, Jimenez-Morales D, Jean Beltran PM, Ramaker ME, Raja AN, Zhao B, Sun Y, Marwaha S, Gaul DA, Hershman SG, Ferrasse A, Xia A, Lanza I, Fernández FM, Montgomery SB, Hevener AL, Ashley EA, Walsh MJ, Sparks LM, Burant CF, Rector RS, Thyfault J, Wheeler MT, Goodpaster BH, Coen PM, Schenk S, Bodine SC, Lindholm ME, MoTrPAC Study Group Cell metabolism 38701776 Cell Metab 2024 Jun 4 https://www.ncbi.nlm.nih.gov/pubmed/38701776
Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue. Many GM, Sanford JA, Sagendorf TJ, Hou Z, Nigro P, Whytock KL, Amar D, Caputo T, Gay NR, Gaul DA, Hirshman MF, Jimenez-Morales D, Lindholm ME, Muehlbauer MJ, Vamvini M, Bergman BC, Fernández FM, Goodyear LJ, Hevener AL, Ortlund EA, Sparks LM, Xia A, Adkins JN, Bodine SC, Newgard CB, Schenk S, MoTrPAC Study Group Nature metabolism 38693320 Nat Metab 2024 May https://www.ncbi.nlm.nih.gov/pubmed/38693320
Physiological Adaptations to Progressive Endurance Exercise Training in Adult and Aged Rats: Insights from the Molecular Transducers of Physical Activity Consortium (MoTrPAC). Schenk S, Sagendorf TJ, Many GM, Lira AK, de Sousa LGO, Bae D, Cicha M, Kramer KS, Muehlbauer M, Hevener AL, Rector RS, Thyfault JP, Williams JP, Goodyear LJ, Esser KA, Newgard CB, Bodine SC, MoTrPAC Study Group Function (Oxford, England) 38984994 Function (Oxf) 2024 Jul 11 https://www.ncbi.nlm.nih.gov/pubmed/38984994
Cardiovascular Precision Medicine in the Genomics Era. Dainis AM, Ashley EA JACC. Basic to translational science 30062216 JACC Basic Transl Sci 2018 Apr https://www.ncbi.nlm.nih.gov/pubmed/30062216
Medical relevance of protein-truncating variants across 337,205 individuals in the UK Biobank study. DeBoever C, Tanigawa Y, Lindholm ME, McInnes G, Lavertu A, Ingelsson E, Chang C, Ashley EA, Bustamante CD, Daly MJ, Rivas MA Nature communications 29691392 Nat Commun 2018 Apr 24 https://www.ncbi.nlm.nih.gov/pubmed/29691392
Targeted Long-Read RNA Sequencing Demonstrates Transcriptional Diversity Driven by Splice-Site Variation in MYBPC3. Dainis A, Tseng E, Clark TA, Hon T, Wheeler M, Ashley E Circulation. Genomic and precision medicine 31112421 Circ Genom Precis Med 2019 May https://www.ncbi.nlm.nih.gov/pubmed/31112421
Molecular Transducers of Physical Activity Consortium (MoTrPAC): human studies design and protocol. MoTrPAC Study Group, Jakicic JM, Kohrt WM, Houmard JA, Miller ME, Radom-Aizik S, Rasmussen BB, Ravussin E, Serra M, Stowe CL, Trappe S, Abouassi H, Adkins JN, Alekel DL, Ashley E, Bamman MM, Bergman BC, Bessesen DH, Broskey NT, Buford TW, Burant CF, Chen H, Christle JW, Clish CB, Coen PM, Collier D, Collins KA, Cooper DM, Cortes T, Cutter GR, Dubis G, Fernández FM, Firnhaber J, Forman DE, Gaul DA, Gay N, Gerszten RE, Goodpaster BH, Gritsenko MA, Haddad F, Huffman KM, Ilkayeva O, Jankowski CM, Jin C, Johannsen NM, Johnson J, Kelly L, Kershaw E, Kraus WE, Laughlin M, Lester B, Lindholm ME, Lowe A, Lu CJ, McGowan J, Melanson EL, Montgomery S, Moore SG, Moreau KL, Muehlbauer M, Musi N, Nair VD, Newgard CB, Newman AB, Nicklas B, Nindl BC, Ormond K, Piehowski PD, Qian WJ, Rankinen T, Rejeski WJ, Robbins J, Rogers RJ, Rooney JL, Rushing S, Sanford JA, Schauer IE, Schwartz RS, Sealfon SC, Slentz C, Sloan R, Smith KS, Snyder M, Spahn J, Sparks LM, Stefanovic-Racic M, Tanner CJ, Thalacker-Mercer A, Tracy R, Trappe TA, Volpi E, Walsh MJ, Wheeler MT, Willis L Journal of applied physiology (Bethesda, Md. : 1985) 38634503 J Appl Physiol (1985) 2024 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/38634503
Temporal dynamics of the multi-omic response to endurance exercise training. MoTrPAC Study Group, Lead Analysts, MoTrPAC Study Group Nature 38693412 Nature 2024 May https://www.ncbi.nlm.nih.gov/pubmed/38693412
Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise. Sanford JA, Nogiec CD, Lindholm ME, Adkins JN, Amar D, Dasari S, Drugan JK, Fernández FM, Radom-Aizik S, Schenk S, Snyder MP, Tracy RP, Vanderboom P, Trappe S, Walsh MJ, Molecular Transducers of Physical Activity Consortium Cell 32589957 Cell 2020 Jun 25 https://www.ncbi.nlm.nih.gov/pubmed/32589957
Silencing of MYH7 ameliorates disease phenotypes in human iPSC-cardiomyocytes. Dainis A, Zaleta-Rivera K, Ribeiro A, Chang ACH, Shang C, Lan F, Burridge PW, Liu WR, Wu JC, Chang ACY, Pruitt BL, Wheeler M, Ashley E Physiological genomics 32567507 Physiol Genomics 2020 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/32567507
Cardiovascular disease: The rise of the genetic risk score. Knowles JW, Ashley EA PLoS medicine 29601582 PLoS Med 2018 Mar https://www.ncbi.nlm.nih.gov/pubmed/29601582
Phenotypic Expression, Natural History, and Risk Stratification of Cardiomyopathy Caused by Filamin C Truncating Variants. Gigli M, Stolfo D, Graw SL, Merlo M, Gregorio C, Nee Chen S, Dal Ferro M, PaldinoMD A, De Angelis G, Brun F, Jirikowic J, Salcedo EE, Turja S, Fatkin D, Johnson R, van Tintelen JP, Te Riele ASJM, Wilde AAM, Lakdawala NK, Picard K, Miani D, Muser D, Maria Severini G, Calkins H, James CA, Murray B, Tichnell C, Parikh VN, Ashley EA, Reuter C, Song J, Judge DP, McKenna WJ, Taylor MRG, Sinagra G, Mestroni L Circulation 34587765 Circulation 2021 Nov 16 https://www.ncbi.nlm.nih.gov/pubmed/34587765
Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures. Nair VD, Pincas H, Smith GR, Zaslavsky E, Ge Y, Amper MAS, Vasoya M, Chikina M, Sun Y, Raja AN, Mao W, Gay NR, Esser KA, Smith KS, Zhao B, Wiel L, Singh A, Lindholm ME, Amar D, Montgomery S, Snyder MP, Walsh MJ, Sealfon SC, MoTrPAC Study Group Cell genomics 38697122 Cell Genom 2024 Jun 12 https://www.ncbi.nlm.nih.gov/pubmed/38697122
Researcher views on returning results from multi-omics data to research participants: insights from The Molecular Transducers of Physical Activity Consortium (MoTrPAC) Study. Ormond KE, Stanclift C, Reuter CM, Carter JN, Murphy KE, Lindholm ME, Wheeler MT BMC medical ethics 39920727 BMC Med Ethics 2025 Feb 7 https://www.ncbi.nlm.nih.gov/pubmed/39920727
Alterations of the skeletal muscle nuclear proteome after acute exercise reveals a post-transcriptional influence. Martin RA, Viggars MR, Sanford JA, Taylor ZW, Hansen JR, Clair GC, Adkins JN, Douglas CM, Esser KA bioRxiv : the preprint server for biology 39149399 bioRxiv 2024 Aug 9 https://www.ncbi.nlm.nih.gov/pubmed/39149399
The mitochondrial multi-omic response to exercise training across tissues. Amar D, Gay NR, Jimenez-Morales D, Beltran PMJ, Ramaker ME, Raja AN, Zhao B, Sun Y, Marwaha S, Gaul D, Hershman SG, Xia A, Lanza I, Fernandez FM, Montgomery SB, Hevener AL, Ashley EA, Walsh MJ, Sparks LM, Burant CF, Rector RS, Thyfault J, Wheeler MT, Goodpaster BH, Coen PM, Schenk S, Bodine SC, Lindholm ME, MoTrPAC Study Group bioRxiv : the preprint server for biology 36711881 bioRxiv 2023 Jan 13 https://www.ncbi.nlm.nih.gov/pubmed/36711881
Endurance Exercise Training Alters Lipidomic Profiles of Plasma and Eight Tissues in Rats: a MoTrPAC study. Ortlund E, Hou Z, Chen CY, Gaul D, Zhang T, Moore S, Liu X, Ivanova A, Maner-Smith K, Newgard C, Bodine S, Savage E, Bennett A, Fernandez F Research square 39606465 Res Sq 2024 Nov 21 https://www.ncbi.nlm.nih.gov/pubmed/39606465
Time trajectories in the transcriptomic response to exercise - a meta-analysis. Amar D, Lindholm ME, Norrbom J, Wheeler MT, Rivas MA, Ashley EA Nature communications 34108459 Nat Commun 2021 Jun 9 https://www.ncbi.nlm.nih.gov/pubmed/34108459
Mind the Gap: The Complete Human Genome Unlocks Benefits for Clinical Genomics. Kim DS, Wiel L, Ashley EA Clinical chemistry 36112529 Clin Chem 2023 Jan 4 https://www.ncbi.nlm.nih.gov/pubmed/36112529
Multi-omic identification of key transcriptional regulatory programs during endurance exercise training. Smith GR, Zhao B, Lindholm ME, Raja A, Viggars M, Pincas H, Gay NR, Sun Y, Ge Y, Nair VD, Sanford JA, Amper MAS, Vasoya M, Smith KS, Montgomery S, Zaslavsky E, Bodine SC, Esser KA, Walsh MJ, Snyder MP, MoTrPAC Study Group bioRxiv : the preprint server for biology 36711841 bioRxiv 2023 Oct 23 https://www.ncbi.nlm.nih.gov/pubmed/36711841
The impact of exercise on gene regulation in association with complex trait genetics. Vetr NG, Gay NR, MoTrPAC Study Group, Montgomery SB Nature communications 38693125 Nat Commun 2024 May 1 https://www.ncbi.nlm.nih.gov/pubmed/38693125
Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy. Parikh VN, Ioannidis AG, Jimenez-Morales D, Gorzynski JE, De Jong HN, Liu X, Roque J, Cepeda-Espinoza VP, Osoegawa K, Hughes C, Sutton SC, Youlton N, Joshi R, Amar D, Tanigawa Y, Russo D, Wong J, Lauzon JT, Edelson J, Mas Montserrat D, Kwon Y, Rubinacci S, Delaneau O, Cappello L, Kim J, Shoura MJ, Raja AN, Watson N, Hammond N, Spiteri E, Mallempati KC, Montero-Martín G, Christle J, Kim J, Kirillova A, Seo K, Huang Y, Zhao C, Moreno-Grau S, Hershman SG, Dalton KP, Zhen J, Kamm J, Bhatt KD, Isakova A, Morri M, Ranganath T, Blish CA, Rogers AJ, Nadeau K, Yang S, Blomkalns A, O'Hara R, Neff NF, DeBoever C, Szalma S, Wheeler MT, Gates CM, Farh K, Schroth GP, Febbo P, deSouza F, Cornejo OE, Fernandez-Vina M, Kistler A, Palacios JA, Pinsky BA, Bustamante CD, Rivas MA, Ashley EA Nature communications 36042219 Nat Commun 2022 Aug 30 https://www.ncbi.nlm.nih.gov/pubmed/36042219
Charting the Molecular Terrain of Exercise: Energetics, Exerkines, and the Future of Multiomic Mapping. Katz DH, Lindholm ME, Ashley EA Physiology (Bethesda, Md.) 39136551 Physiology (Bethesda) 2025 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/39136551
Protocol for high-throughput DNA methylation profiling in rat tissues using automated reduced representation bisulfite sequencing. Nair VD, Pincas H, Amper MAS, Ge Y, Vasoya M, Raja AN, Walsh MJ, Sealfon SC STAR protocols 38691461 STAR Protoc 2024 Jun 21 https://www.ncbi.nlm.nih.gov/pubmed/38691461
A deep redox proteome profiling workflow and its application to skeletal muscle of a Duchenne Muscular Dystrophy model. Day NJ, Zhang T, Gaffrey MJ, Zhao R, Fillmore TL, Moore RJ, Rodney GG, Qian WJ Free radical biology & medicine 36306991 Free Radic Biol Med 2022 Nov 20 https://www.ncbi.nlm.nih.gov/pubmed/36306991
Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH. Hutchinson-Bunch C, Sanford JA, Hansen JR, Gritsenko MA, Rodland KD, Piehowski PD, Qian WJ, Adkins JN ACS omega 34056417 ACS Omega 2021 May 18 https://www.ncbi.nlm.nih.gov/pubmed/34056417
Fatiguing contractions increase protein S-glutathionylation occupancy in mouse skeletal muscle. Kramer PA, Duan J, Gaffrey MJ, Shukla AK, Wang L, Bammler TK, Qian WJ, Marcinek DJ Redox biology 29857311 Redox Biol 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/29857311
Characterization of cellular oxidative stress response by stoichiometric redox proteomics. Zhang T, Gaffrey MJ, Li X, Qian WJ American journal of physiology. Cell physiology 33264075 Am J Physiol Cell Physiol 2021 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/33264075
Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards. Gibbons BC, Fillmore TL, Gao Y, Moore RJ, Liu T, Nakayasu ES, Metz TO, Payne SH Journal of proteome research 30525668 J Proteome Res 2019 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/30525668
Resin-Assisted Capture Coupled with Isobaric Tandem Mass Tag Labeling for Multiplexed Quantification of Protein Thiol Oxidation. Gaffrey MJ, Day NJ, Li X, Qian WJ Journal of visualized experiments : JoVE 34223836 J Vis Exp 2021 Jun 21 https://www.ncbi.nlm.nih.gov/pubmed/34223836
Exerkines in health, resilience and disease. Chow LS, Gerszten RE, Taylor JM, Pedersen BK, van Praag H, Trappe S, Febbraio MA, Galis ZS, Gao Y, Haus JM, Lanza IR, Lavie CJ, Lee CH, Lucia A, Moro C, Pandey A, Robbins JM, Stanford KI, Thackray AE, Villeda S, Watt MJ, Xia A, Zierath JR, Goodpaster BH, Snyder MP Nature reviews. Endocrinology 35304603 Nat Rev Endocrinol 2022 May https://www.ncbi.nlm.nih.gov/pubmed/35304603
Dynamic DNA methylation: In the right place at the right time. Luo C, Hajkova P, Ecker JR Science (New York, N.Y.) 30262495 Science 2018 Sep 28 https://www.ncbi.nlm.nih.gov/pubmed/30262495
Leveraging Mobile Technology for Public Health Promotion: A Multidisciplinary Perspective. Hicks JL, Boswell MA, Althoff T, Crum AJ, Ku JP, Landay JA, Moya PML, Murnane EL, Snyder MP, King AC, Delp SL Annual review of public health 36542772 Annu Rev Public Health 2023 Apr 3 https://www.ncbi.nlm.nih.gov/pubmed/36542772
Nonsense-mediated decay is highly stable across individuals and tissues. Teran NA, Nachun DC, Eulalio T, Ferraro NM, Smail C, Rivas MA, Montgomery SB American journal of human genetics 34216550 Am J Hum Genet 2021 Aug 5 https://www.ncbi.nlm.nih.gov/pubmed/34216550
Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurvivors. Evans CR, Karnovsky A, Puskarich MA, Michailidis G, Jones AE, Stringer KA Journal of proteome research 30895797 J Proteome Res 2019 May 3 https://www.ncbi.nlm.nih.gov/pubmed/30895797
Higher mitochondrial oxidative capacity is the primary molecular differentiator in muscle of rats with high and low intrinsic cardiorespiratory fitness. Fleischman JY, Van den Bergh F, Collins NL, Bowers M, Beard DA, Burant CF Molecular metabolism 37625738 Mol Metab 2023 Oct https://www.ncbi.nlm.nih.gov/pubmed/37625738
Metabolomics and adductomics of newborn bloodspots to retrospectively assess the early-life exposome. Petrick LM, Uppal K, Funk WE Current opinion in pediatrics 31913157 Curr Opin Pediatr 2020 Apr https://www.ncbi.nlm.nih.gov/pubmed/31913157
Mass Spectrometry-Based Non-targeted Metabolic Profiling for Disease Detection: Recent Developments. Zang X, Monge ME, Fernández FM Trends in analytical chemistry : TRAC 32831436 Trends Analyt Chem 2019 Sep https://www.ncbi.nlm.nih.gov/pubmed/32831436
Challenges in Identifying the Dark Molecules of Life. Monge ME, Dodds JN, Baker ES, Edison AS, Fernández FM Annual review of analytical chemistry (Palo Alto, Calif.) 30883183 Annu Rev Anal Chem (Palo Alto Calif) 2019 Jun 12 https://www.ncbi.nlm.nih.gov/pubmed/30883183
International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis. Thompson JW, Adams KJ, Adamski J, Asad Y, Borts D, Bowden JA, Byram G, Dang V, Dunn WB, Fernandez F, Fiehn O, Gaul DA, Hühmer AF, Kalli A, Koal T, Koeniger S, Mandal R, Meier F, Naser FJ, O'Neil D, Pal A, Patti GJ, Pham-Tuan H, Prehn C, Raynaud FI, Shen T, Southam AD, St John-Williams L, Sulek K, Vasilopoulou CG, Viant M, Winder CL, Wishart D, Zhang L, Zheng J, Moseley MA Analytical chemistry 31638379 Anal Chem 2019 Nov 19 https://www.ncbi.nlm.nih.gov/pubmed/31638379
The COVID-19 MS Coalition-accelerating diagnostics, prognostics, and treatment. Struwe W, Emmott E, Bailey M, Sharon M, Sinz A, Corrales FJ, Thalassinos K, Braybrook J, Mills C, Barran P, COVID-19 MS Coalition Lancet (London, England) 32473097 Lancet 2020 Jun 6 https://www.ncbi.nlm.nih.gov/pubmed/32473097
Ambient mass spectrometry in metabolomics. Clendinen CS, Monge ME, Fernández FM The Analyst 28792022 Analyst 2017 Aug 21 https://www.ncbi.nlm.nih.gov/pubmed/28792022
Triboelectric Nanogenerator Ion Mobility-Mass Spectrometry for In-Depth Lipid Annotation. Bouza M, Li Y, Wang AC, Wang ZL, Fernández FM Analytical chemistry 33720699 Anal Chem 2021 Apr 6 https://www.ncbi.nlm.nih.gov/pubmed/33720699
Triboelectric Nanogenerators: Low-Cost Power Supplies for Improved Electrospray Ionization. Vallejo DD, Corstvet JL, Fernández FM International journal of mass spectrometry 38053979 Int J Mass Spectrom 2024 Jan https://www.ncbi.nlm.nih.gov/pubmed/38053979
Emerging Affinity Reagents for High Throughput Proteomics: Trust, but Verify. Benson MD, Ngo D, Ganz P, Gerszten RE Circulation 31710523 Circulation 2019 Nov 12 https://www.ncbi.nlm.nih.gov/pubmed/31710523
Rapid and deep-scale ubiquitylation profiling for biology and translational research. Udeshi ND, Mani DC, Satpathy S, Fereshetian S, Gasser JA, Svinkina T, Olive ME, Ebert BL, Mertins P, Carr SA Nature communications 31953384 Nat Commun 2020 Jan 17 https://www.ncbi.nlm.nih.gov/pubmed/31953384
Association of Dimethylguanidino Valeric Acid With Partial Resistance to Metabolic Health Benefits of Regular Exercise. Robbins JM, Herzig M, Morningstar J, Sarzynski MA, Cruz DE, Wang TJ, Gao Y, Wilson JG, Bouchard C, Rankinen T, Gerszten RE JAMA cardiology 31166569 JAMA Cardiol 2019 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/31166569
Omics-driven investigation of the biology underlying intrinsic submaximal working capacity and its trainability. Hota M, Barber JL, Ruiz-Ramie JJ, Schwartz CS, Lam DTUH, Rao P, Mi MY, Katz DH, Robbins JM, Clish CB, Gerszten RE, Sarzynski MA, Ghosh S, Bouchard C Physiological genomics 37661925 Physiol Genomics 2023 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/37661925
Plasma Metabolite Profiles in Response to Chronic Exercise. Brennan AM, Benson M, Morningstar J, Herzig M, Robbins J, Gerszten RE, Ross R Medicine and science in sports and exercise 29509640 Med Sci Sports Exerc 2018 Jul https://www.ncbi.nlm.nih.gov/pubmed/29509640
CBL mutations drive PI3K/AKT signaling via increased interaction with LYN and PIK3R1. Belizaire R, Koochaki SHJ, Udeshi ND, Vedder A, Sun L, Svinkina T, Hartigan C, McConkey M, Kovalcik V, Bizuayehu A, Stanclift C, Schenone M, Carr SA, Padron E, Ebert BL Blood 33512474 Blood 2021 Apr 22 https://www.ncbi.nlm.nih.gov/pubmed/33512474
The HERITAGE Family Study: A Review of the Effects of Exercise Training on Cardiometabolic Health, with Insights into Molecular Transducers. Sarzynski MA, Rice TK, Després JP, Pérusse L, Tremblay A, Stanforth PR, Tchernof A, Barber JL, Falciani F, Clish C, Robbins JM, Ghosh S, Gerszten RE, Leon AS, Skinner JS, Rao DC, Bouchard C Medicine and science in sports and exercise 35611651 Med Sci Sports Exerc 2022 May 1 https://www.ncbi.nlm.nih.gov/pubmed/35611651
Succinate links atrial dysfunction and cardioembolic stroke. Nelson SE, Ament Z, Wolcott Z, Gerszten RE, Kimberly WT Neurology 30674589 Neurology 2019 Feb 19 https://www.ncbi.nlm.nih.gov/pubmed/30674589
Dimethylguanidino valeric acid is a marker of liver fat and predicts diabetes. O'Sullivan JF, Morningstar JE, Yang Q, Zheng B, Gao Y, Jeanfavre S, Scott J, Fernandez C, Zheng H, O'Connor S, Cohen P, Vasan RS, Long MT, Wilson JG, Melander O, Wang TJ, Fox C, Peterson RT, Clish CB, Corey KE, Gerszten RE The Journal of clinical investigation 29083323 J Clin Invest 2017 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/29083323
Metabolomics and Proteomics in Type 2 Diabetes. Chen ZZ, Gerszten RE Circulation research 32437301 Circ Res 2020 May 22 https://www.ncbi.nlm.nih.gov/pubmed/32437301
Cardiovascular Risk Beyond Low-Density Lipoprotein Cholesterol. Mayr M, Gerszten R, Kiechl S Journal of the American College of Cardiology 29420959 J Am Coll Cardiol 2018 Feb 13 https://www.ncbi.nlm.nih.gov/pubmed/29420959
Proteomic profiling platforms head to head: Leveraging genetics and clinical traits to compare aptamer- and antibody-based methods. Katz DH, Robbins JM, Deng S, Tahir UA, Bick AG, Pampana A, Yu Z, Ngo D, Benson MD, Chen ZZ, Cruz DE, Shen D, Gao Y, Bouchard C, Sarzynski MA, Correa A, Natarajan P, Wilson JG, Gerszten RE Science advances 35984888 Sci Adv 2022 Aug 19 https://www.ncbi.nlm.nih.gov/pubmed/35984888
Human plasma proteomic profiles indicative of cardiorespiratory fitness. Robbins JM, Peterson B, Schranner D, Tahir UA, Rienmüller T, Deng S, Keyes MJ, Katz DH, Beltran PMJ, Barber JL, Baumgartner C, Carr SA, Ghosh S, Shen C, Jennings LL, Ross R, Sarzynski MA, Bouchard C, Gerszten RE Nature metabolism 34045743 Nat Metab 2021 Jun https://www.ncbi.nlm.nih.gov/pubmed/34045743
TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach. Zecha J, Satpathy S, Kanashova T, Avanessian SC, Kane MH, Clauser KR, Mertins P, Carr SA, Kuster B Molecular & cellular proteomics : MCP 30967486 Mol Cell Proteomics 2019 Jul https://www.ncbi.nlm.nih.gov/pubmed/30967486
Protein-metabolite association studies identify novel proteomic determinants of metabolite levels in human plasma. Benson MD, Eisman AS, Tahir UA, Katz DH, Deng S, Ngo D, Robbins JM, Hofmann A, Shi X, Zheng S, Keyes M, Yu Z, Gao Y, Farrell L, Shen D, Chen ZZ, Cruz DE, Sims M, Correa A, Tracy RP, Durda P, Taylor KD, Liu Y, Johnson WC, Guo X, Yao J, Chen YI, Manichaikul AW, Jain D, Yang Q, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Bouchard C, Sarzynski MA, Rich SS, Rotter JI, Wang TJ, Wilson JG, Clish CB, Sarkar IN, Natarajan P, Gerszten RE Cell metabolism 37582364 Cell Metab 2023 Sep 5 https://www.ncbi.nlm.nih.gov/pubmed/37582364
Author Correction: Human plasma proteomic profiles indicative of cardiorespiratory fitness. Robbins JM, Peterson B, Schranner D, Tahir UA, Rienmüller T, Deng S, Keyes MJ, Katz DH, Beltran PMJ, Barber JL, Baumgartner C, Carr SA, Ghosh S, Shen C, Jennings LL, Ross R, Sarzynski MA, Bouchard C, Gerszten RE Nature metabolism 34446928 Nat Metab 2021 Sep https://www.ncbi.nlm.nih.gov/pubmed/34446928
Exercise, exerkines, and cardiometabolic health: from individual players to a team sport. Robbins JM, Gerszten RE The Journal of clinical investigation 37259917 J Clin Invest 2023 Jun 1 https://www.ncbi.nlm.nih.gov/pubmed/37259917
Transcriptome variation in human tissues revealed by long-read sequencing. Glinos DA, Garborcauskas G, Hoffman P, Ehsan N, Jiang L, Gokden A, Dai X, Aguet F, Brown KL, Garimella K, Bowers T, Costello M, Ardlie K, Jian R, Tucker NR, Ellinor PT, Harrington ED, Tang H, Snyder M, Juul S, Mohammadi P, MacArthur DG, Lappalainen T, Cummings BB Nature 35922509 Nature 2022 Aug https://www.ncbi.nlm.nih.gov/pubmed/35922509
Comprehensive interrogation of human skeletal muscle reveals a dissociation between insulin resistance and mitochondrial capacity. Whytock KL, Pino MF, Sun Y, Yu G, De Carvalho FG, Yeo RX, Vega RB, Parmar G, Divoux A, Kapoor N, Yi F, Cornnell H, Patten DA, Harper ME, Gardell SJ, Smith SR, Walsh MJ, Sparks LM American journal of physiology. Endocrinology and metabolism 37584609 Am J Physiol Endocrinol Metab 2023 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/37584609
A vast resource of allelic expression data spanning human tissues. Castel SE, Aguet F, Mohammadi P, GTEx Consortium, Ardlie KG, Lappalainen T Genome biology 32912332 Genome Biol 2020 Sep 11 https://www.ncbi.nlm.nih.gov/pubmed/32912332
Skeletal muscle transcriptional networks linked to type I myofiber grouping in Parkinson's disease. Lavin KM, Sealfon SC, McDonald MN, Roberts BM, Wilk K, Nair VD, Ge Y, Lakshman Kumar P, Windham ST, Bamman MM Journal of applied physiology (Bethesda, Md. : 1985) 31829804 J Appl Physiol (1985) 2020 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/31829804
Dissecting aortic aneurysm in Marfan syndrome is associated with losartan-sensitive transcriptomic modulation of aortic cells. Sun Y, Asano K, Sedes L, Cantalupo A, Hansen J, Iyengar R, Walsh MJ, Ramirez F JCI insight 37022786 JCI Insight 2023 May 22 https://www.ncbi.nlm.nih.gov/pubmed/37022786
Exercise alters molecular profiles of inflammation and substrate metabolism in human white adipose tissue. Pino MF, Dijkstra P, Whytock KL, Ahn C, Yu G, Sanford JA, Hansen J, Hutchinson C, Gritsenko M, Piehowski P, Adkins JN, Carnero EA, Sealfon S, Zaslavsky E, Nair V, Smith SR, Sparks LM American journal of physiology. Endocrinology and metabolism 39933702 Am J Physiol Endocrinol Metab 2025 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/39933702
Rehabilitative Impact of Exercise Training on Human Skeletal Muscle Transcriptional Programs in Parkinson's Disease. Lavin KM, Ge Y, Sealfon SC, Nair VD, Wilk K, McAdam JS, Windham ST, Kumar PL, McDonald MN, Bamman MM Frontiers in physiology 32625117 Front Physiol 2020 https://www.ncbi.nlm.nih.gov/pubmed/32625117
Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk. Castel SE, Cervera A, Mohammadi P, Aguet F, Reverter F, Wolman A, Guigo R, Iossifov I, Vasileva A, Lappalainen T Nature genetics 30127527 Nat Genet 2018 Sep https://www.ncbi.nlm.nih.gov/pubmed/30127527
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations. Kim-Hellmuth S, Bechheim M, Pütz B, Mohammadi P, Nédélec Y, Giangreco N, Becker J, Kaiser V, Fricker N, Beier E, Boor P, Castel SE, Nöthen MM, Barreiro LB, Pickrell JK, Müller-Myhsok B, Lappalainen T, Schumacher J, Hornung V Nature communications 28814792 Nat Commun 2017 Aug 16 https://www.ncbi.nlm.nih.gov/pubmed/28814792
A micromachined force sensing apparatus and method for human engineered cardiac tissue and induced pluripotent stem cell characterization. Turnbull IC, Zhu W, Stillitano F, Chien CC, Gaitas A Sensors and actuators. A, Physical 34305317 Sens Actuators A Phys 2021 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/34305317
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Reinventing the wheel: comparison of two wheel cage styles for assessing mouse voluntary running activity. Seward T, Harfmann BD, Esser KA, Schroder EA Journal of applied physiology (Bethesda, Md. : 1985) 29357507 J Appl Physiol (1985) 2018 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/29357507
Exercise sets the muscle clock with a calcium assist. Wolff CA, Esser KA The Journal of physiology 32949163 J Physiol 2020 Dec https://www.ncbi.nlm.nih.gov/pubmed/32949163
Time of Day and Muscle Strength: A Circadian Output? Douglas CM, Hesketh SJ, Esser KA Physiology (Bethesda, Md.) 33325817 Physiology (Bethesda) 2021 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/33325817
Time for Exercise? Exercise and Its Influence on the Skeletal Muscle Clock. Martin RA, Esser KA Journal of biological rhythms 36129164 J Biol Rhythms 2022 Dec https://www.ncbi.nlm.nih.gov/pubmed/36129164
Targeted brain-specific tauopathy compromises peripheral skeletal muscle integrity and function. Alava B, Hery G, Sidhom S, Gutierrez-Monreal M, Prokop S, Esser KA, Abisambra J Aging brain 38419621 Aging Brain 2024 https://www.ncbi.nlm.nih.gov/pubmed/38419621
Mechanisms of mechanical overload-induced skeletal muscle hypertrophy: current understanding and future directions. Roberts MD, McCarthy JJ, Hornberger TA, Phillips SM, Mackey AL, Nader GA, Boppart MD, Kavazis AN, Reidy PT, Ogasawara R, Libardi CA, Ugrinowitsch C, Booth FW, Esser KA Physiological reviews 37382939 Physiol Rev 2023 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/37382939
Clockwork conditioning: Aligning the skeletal muscle clock with time-of-day exercise for cardiometabolic health. Procopio SB, Esser KA Journal of molecular and cellular cardiology 39615287 J Mol Cell Cardiol 2025 Jan https://www.ncbi.nlm.nih.gov/pubmed/39615287
Metabolism and exercise: the skeletal muscle clock takes centre stage. Martin RA, Viggars MR, Esser KA Nature reviews. Endocrinology 36726017 Nat Rev Endocrinol 2023 May https://www.ncbi.nlm.nih.gov/pubmed/36726017
A wrinkle in time: circadian biology in pulmonary vascular health and disease. Bryant AJ, Ebrahimi E, Nguyen A, Wolff CA, Gumz ML, Liu AC, Esser KA American journal of physiology. Lung cellular and molecular physiology 34850650 Am J Physiol Lung Cell Mol Physiol 2022 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/34850650
Reuniting the Body "Neck Up and Neck Down" to Understand Cognitive Aging: The Nexus of Geroscience and Neuroscience. Hernandez AR, Hoffman JM, Hernandez CM, Cortes CJ, Jumbo-Lucioni P, Baxter MG, Esser KA, Liu AC, McMahon LL, Bizon JL, Burke SN, Buford TW, Carter CS The journals of gerontology. Series A, Biological sciences and medical sciences 34309630 J Gerontol A Biol Sci Med Sci 2022 Jan 7 https://www.ncbi.nlm.nih.gov/pubmed/34309630
Exploring Circadian Changes in Muscle Physiology: Methodological Considerations. Viggars MR, Esser KA Function (Oxford, England) 39227174 Function (Oxf) 2024 Nov 20 https://www.ncbi.nlm.nih.gov/pubmed/39227174
Time-of-day dependent effects of contractile activity on the phase of the skeletal muscle clock. Kemler D, Wolff CA, Esser KA The Journal of physiology 32537739 J Physiol 2020 Sep https://www.ncbi.nlm.nih.gov/pubmed/32537739
Exercise Timing and Circadian Rhythms. Wolff CA, Esser KA Current opinion in physiology 31938759 Curr Opin Physiol 2019 Aug https://www.ncbi.nlm.nih.gov/pubmed/31938759
Fiber-type traps: revisiting common misconceptions about skeletal muscle fiber types with application to motor control, biomechanics, physiology, and biology. Blemker SS, Brooks SV, Esser KA, Saul KR Journal of applied physiology (Bethesda, Md. : 1985) 37994416 J Appl Physiol (1985) 2024 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/37994416
Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle. Nair VD, Vasoya M, Nair V, Smith GR, Pincas H, Ge Y, Douglas CM, Esser KA, Sealfon SC Genomics 34547403 Genomics 2021 Nov https://www.ncbi.nlm.nih.gov/pubmed/34547403
Skeletal muscle BMAL1 is necessary for transcriptional adaptation of local and peripheral tissues in response to endurance exercise training. Viggars MR, Berko HE, Hesketh SJ, Wolff CA, Gutierrez-Monreal MA, Martin RA, Jennings IG, Huo Z, Esser KA Molecular metabolism 38950777 Mol Metab 2024 Aug https://www.ncbi.nlm.nih.gov/pubmed/38950777
Targeted brain-specific tauopathy compromises peripheral skeletal muscle integrity and function. Alava B, Hery G, Sidhom S, Prokop S, Esser K, Abisambra J bioRxiv : the preprint server for biology 38014109 bioRxiv 2023 Nov 17 https://www.ncbi.nlm.nih.gov/pubmed/38014109

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