Molecular Transducers of Physical Activity Consortium (MoTrPAC)
Molecular Transducers of Physical Activity Consortium (MoTrPAC)
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date |
|---|---|---|---|---|---|
| Cardiovascular disease: The rise of the genetic risk score. | Knowles JW, Ashley EA | PLoS medicine | 29601582 | PLoS Med | 2018 Mar |
| Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise. | Sanford JA, Nogiec CD, Lindholm ME, Adkins JN, Amar D, Dasari S, Drugan JK, Fernández FM, Radom-Aizik S, Schenk S, Snyder MP, Tracy RP, Vanderboom P, Trappe S, Walsh MJ, Molecular Transducers of Physical Activity Consortium | Cell | 32589957 | Cell | 2020 Jun 25 |
| Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures. | Nair VD, Pincas H, Smith GR, Zaslavsky E, Ge Y, Amper MAS, Vasoya M, Chikina M, Sun Y, Raja AN, Mao W, Gay NR, Esser KA, Smith KS, Zhao B, Wiel L, Singh A, Lindholm ME, Amar D, Montgomery S, Snyder MP, Walsh MJ, Sealfon SC, MoTrPAC Study Group | Cell genomics | 38697122 | Cell Genom | 2024 Jun 12 |
| Physiological Adaptations to Progressive Endurance Exercise Training in Adult and Aged Rats: Insights from the Molecular Transducers of Physical Activity Consortium (MoTrPAC). | Schenk S, Sagendorf TJ, Many GM, Lira AK, de Sousa LGO, Bae D, Cicha M, Kramer KS, Muehlbauer M, Hevener AL, Rector RS, Thyfault JP, Williams JP, Goodyear LJ, Esser KA, Newgard CB, Bodine SC, MoTrPAC Study Group | Function (Oxford, England) | 38984994 | Function (Oxf) | 2024 Jul 11 |
| Cardiovascular Precision Medicine in the Genomics Era. | Dainis AM, Ashley EA | JACC. Basic to translational science | 30062216 | JACC Basic Transl Sci | 2018 Apr |
| Molecular Transducers of Physical Activity Consortium (MoTrPAC): human studies design and protocol. | MoTrPAC Study Group, Jakicic JM, Kohrt WM, Houmard JA, Miller ME, Radom-Aizik S, Rasmussen BB, Ravussin E, Serra M, Stowe CL, Trappe S, Abouassi H, Adkins JN, Alekel DL, Ashley E, Bamman MM, Bergman BC, Bessesen DH, Broskey NT, Buford TW, Burant CF, Chen H, Christle JW, Clish CB, Coen PM, Collier D, Collins KA, Cooper DM, Cortes T, Cutter GR, Dubis G, Fernández FM, Firnhaber J, Forman DE, Gaul DA, Gay N, Gerszten RE, Goodpaster BH, Gritsenko MA, Haddad F, Huffman KM, Ilkayeva O, Jankowski CM, Jin C, Johannsen NM, Johnson J, Kelly L, Kershaw E, Kraus WE, Laughlin M, Lester B, Lindholm ME, Lowe A, Lu CJ, McGowan J, Melanson EL, Montgomery S, Moore SG, Moreau KL, Muehlbauer M, Musi N, Nair VD, Newgard CB, Newman AB, Nicklas B, Nindl BC, Ormond K, Piehowski PD, Qian WJ, Rankinen T, Rejeski WJ, Robbins J, Rogers RJ, Rooney JL, Rushing S, Sanford JA, Schauer IE, Schwartz RS, Sealfon SC, Slentz C, Sloan R, Smith KS, Snyder M, Spahn J, Sparks LM, Stefanovic-Racic M, Tanner CJ, Thalacker-Mercer A, Tracy R, Trappe TA, Volpi E, Walsh MJ, Wheeler MT, Willis L | Journal of applied physiology (Bethesda, Md. : 1985) | 38634503 | J Appl Physiol (1985) | 2024 Sep 1 |
| Researcher views on returning results from multi-omics data to research participants: insights from The Molecular Transducers of Physical Activity Consortium (MoTrPAC) Study. | Ormond KE, Stanclift C, Reuter CM, Carter JN, Murphy KE, Lindholm ME, Wheeler MT | BMC medical ethics | 39920727 | BMC Med Ethics | 2025 Feb 7 |
| Targeted Long-Read RNA Sequencing Demonstrates Transcriptional Diversity Driven by Splice-Site Variation in MYBPC3. | Dainis A, Tseng E, Clark TA, Hon T, Wheeler M, Ashley E | Circulation. Genomic and precision medicine | 31112421 | Circ Genom Precis Med | 2019 May |
| Medical relevance of protein-truncating variants across 337,205 individuals in the UK Biobank study. | DeBoever C, Tanigawa Y, Lindholm ME, McInnes G, Lavertu A, Ingelsson E, Chang C, Ashley EA, Bustamante CD, Daly MJ, Rivas MA | Nature communications | 29691392 | Nat Commun | 2018 Apr 24 |
| Silencing of MYH7 ameliorates disease phenotypes in human iPSC-cardiomyocytes. | Dainis A, Zaleta-Rivera K, Ribeiro A, Chang ACH, Shang C, Lan F, Burridge PW, Liu WR, Wu JC, Chang ACY, Pruitt BL, Wheeler M, Ashley E | Physiological genomics | 32567507 | Physiol Genomics | 2020 Jul 1 |
| Phenotypic Expression, Natural History, and Risk Stratification of Cardiomyopathy Caused by Filamin C Truncating Variants. | Gigli M, Stolfo D, Graw SL, Merlo M, Gregorio C, Nee Chen S, Dal Ferro M, PaldinoMD A, De Angelis G, Brun F, Jirikowic J, Salcedo EE, Turja S, Fatkin D, Johnson R, van Tintelen JP, Te Riele ASJM, Wilde AAM, Lakdawala NK, Picard K, Miani D, Muser D, Maria Severini G, Calkins H, James CA, Murray B, Tichnell C, Parikh VN, Ashley EA, Reuter C, Song J, Judge DP, McKenna WJ, Taylor MRG, Sinagra G, Mestroni L | Circulation | 34587765 | Circulation | 2021 Nov 16 |
| The mitochondrial multi-omic response to exercise training across rat tissues. | Amar D, Gay NR, Jimenez-Morales D, Jean Beltran PM, Ramaker ME, Raja AN, Zhao B, Sun Y, Marwaha S, Gaul DA, Hershman SG, Ferrasse A, Xia A, Lanza I, Fernández FM, Montgomery SB, Hevener AL, Ashley EA, Walsh MJ, Sparks LM, Burant CF, Rector RS, Thyfault J, Wheeler MT, Goodpaster BH, Coen PM, Schenk S, Bodine SC, Lindholm ME, MoTrPAC Study Group | Cell metabolism | 38701776 | Cell Metab | 2024 Jun 4 |
| Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue. | Many GM, Sanford JA, Sagendorf TJ, Hou Z, Nigro P, Whytock KL, Amar D, Caputo T, Gay NR, Gaul DA, Hirshman MF, Jimenez-Morales D, Lindholm ME, Muehlbauer MJ, Vamvini M, Bergman BC, Fernández FM, Goodyear LJ, Hevener AL, Ortlund EA, Sparks LM, Xia A, Adkins JN, Bodine SC, Newgard CB, Schenk S, MoTrPAC Study Group | Nature metabolism | 38693320 | Nat Metab | 2024 May |
| Temporal dynamics of the multi-omic response to endurance exercise training. | MoTrPAC Study Group, Lead Analysts, MoTrPAC Study Group | Nature | 38693412 | Nature | 2024 May |
| The mitochondrial multi-omic response to exercise training across tissues. | Amar D, Gay NR, Jimenez-Morales D, Beltran PMJ, Ramaker ME, Raja AN, Zhao B, Sun Y, Marwaha S, Gaul D, Hershman SG, Xia A, Lanza I, Fernandez FM, Montgomery SB, Hevener AL, Ashley EA, Walsh MJ, Sparks LM, Burant CF, Rector RS, Thyfault J, Wheeler MT, Goodpaster BH, Coen PM, Schenk S, Bodine SC, Lindholm ME, MoTrPAC Study Group | bioRxiv : the preprint server for biology | 36711881 | bioRxiv | 2023 Jan 13 |
| Mind the Gap: The Complete Human Genome Unlocks Benefits for Clinical Genomics. | Kim DS, Wiel L, Ashley EA | Clinical chemistry | 36112529 | Clin Chem | 2023 Jan 4 |
| Protocol for high-throughput DNA methylation profiling in rat tissues using automated reduced representation bisulfite sequencing. | Nair VD, Pincas H, Amper MAS, Ge Y, Vasoya M, Raja AN, Walsh MJ, Sealfon SC | STAR protocols | 38691461 | STAR Protoc | 2024 Jun 21 |
| Time trajectories in the transcriptomic response to exercise - a meta-analysis. | Amar D, Lindholm ME, Norrbom J, Wheeler MT, Rivas MA, Ashley EA | Nature communications | 34108459 | Nat Commun | 2021 Jun 9 |
| Endurance Exercise Training Alters Lipidomic Profiles of Plasma and Eight Tissues in Rats: a MoTrPAC study. | Ortlund E, Hou Z, Chen CY, Gaul D, Zhang T, Moore S, Liu X, Ivanova A, Maner-Smith K, Newgard C, Bodine S, Savage E, Bennett A, Fernandez F | Research square | 39606465 | Res Sq | 2024 Nov 21 |
| Charting the Molecular Terrain of Exercise: Energetics, Exerkines, and the Future of Multiomic Mapping. | Katz DH, Lindholm ME, Ashley EA | Physiology (Bethesda, Md.) | 39136551 | Physiology (Bethesda) | 2025 Mar 1 |
| Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy. | Parikh VN, Ioannidis AG, Jimenez-Morales D, Gorzynski JE, De Jong HN, Liu X, Roque J, Cepeda-Espinoza VP, Osoegawa K, Hughes C, Sutton SC, Youlton N, Joshi R, Amar D, Tanigawa Y, Russo D, Wong J, Lauzon JT, Edelson J, Mas Montserrat D, Kwon Y, Rubinacci S, Delaneau O, Cappello L, Kim J, Shoura MJ, Raja AN, Watson N, Hammond N, Spiteri E, Mallempati KC, Montero-Martín G, Christle J, Kim J, Kirillova A, Seo K, Huang Y, Zhao C, Moreno-Grau S, Hershman SG, Dalton KP, Zhen J, Kamm J, Bhatt KD, Isakova A, Morri M, Ranganath T, Blish CA, Rogers AJ, Nadeau K, Yang S, Blomkalns A, O'Hara R, Neff NF, DeBoever C, Szalma S, Wheeler MT, Gates CM, Farh K, Schroth GP, Febbo P, deSouza F, Cornejo OE, Fernandez-Vina M, Kistler A, Palacios JA, Pinsky BA, Bustamante CD, Rivas MA, Ashley EA | Nature communications | 36042219 | Nat Commun | 2022 Aug 30 |
| Multi-omic identification of key transcriptional regulatory programs during endurance exercise training. | Smith GR, Zhao B, Lindholm ME, Raja A, Viggars M, Pincas H, Gay NR, Sun Y, Ge Y, Nair VD, Sanford JA, Amper MAS, Vasoya M, Smith KS, Montgomery S, Zaslavsky E, Bodine SC, Esser KA, Walsh MJ, Snyder MP, MoTrPAC Study Group | bioRxiv : the preprint server for biology | 36711841 | bioRxiv | 2023 Oct 23 |
| The impact of exercise on gene regulation in association with complex trait genetics. | Vetr NG, Gay NR, MoTrPAC Study Group, Montgomery SB | Nature communications | 38693125 | Nat Commun | 2024 May 1 |
| Alterations of the skeletal muscle nuclear proteome after acute exercise reveals a post-transcriptional influence. | Martin RA, Viggars MR, Sanford JA, Taylor ZW, Hansen JR, Clair GC, Adkins JN, Douglas CM, Esser KA | bioRxiv : the preprint server for biology | 39149399 | bioRxiv | 2024 Aug 9 |
| Resin-Assisted Capture Coupled with Isobaric Tandem Mass Tag Labeling for Multiplexed Quantification of Protein Thiol Oxidation. | Gaffrey MJ, Day NJ, Li X, Qian WJ | Journal of visualized experiments : JoVE | 34223836 | J Vis Exp | 2021 Jun 21 |
| Fatiguing contractions increase protein S-glutathionylation occupancy in mouse skeletal muscle. | Kramer PA, Duan J, Gaffrey MJ, Shukla AK, Wang L, Bammler TK, Qian WJ, Marcinek DJ | Redox biology | 29857311 | Redox Biol | 2018 Jul |
| Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards. | Gibbons BC, Fillmore TL, Gao Y, Moore RJ, Liu T, Nakayasu ES, Metz TO, Payne SH | Journal of proteome research | 30525668 | J Proteome Res | 2019 Feb 1 |
| Characterization of cellular oxidative stress response by stoichiometric redox proteomics. | Zhang T, Gaffrey MJ, Li X, Qian WJ | American journal of physiology. Cell physiology | 33264075 | Am J Physiol Cell Physiol | 2021 Feb 1 |
| Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH. | Hutchinson-Bunch C, Sanford JA, Hansen JR, Gritsenko MA, Rodland KD, Piehowski PD, Qian WJ, Adkins JN | ACS omega | 34056417 | ACS Omega | 2021 May 18 |
| A deep redox proteome profiling workflow and its application to skeletal muscle of a Duchenne Muscular Dystrophy model. | Day NJ, Zhang T, Gaffrey MJ, Zhao R, Fillmore TL, Moore RJ, Rodney GG, Qian WJ | Free radical biology & medicine | 36306991 | Free Radic Biol Med | 2022 Nov 20 |
| Leveraging Mobile Technology for Public Health Promotion: A Multidisciplinary Perspective. | Hicks JL, Boswell MA, Althoff T, Crum AJ, Ku JP, Landay JA, Moya PML, Murnane EL, Snyder MP, King AC, Delp SL | Annual review of public health | 36542772 | Annu Rev Public Health | 2023 Apr 3 |
| Exerkines in health, resilience and disease. | Chow LS, Gerszten RE, Taylor JM, Pedersen BK, van Praag H, Trappe S, Febbraio MA, Galis ZS, Gao Y, Haus JM, Lanza IR, Lavie CJ, Lee CH, Lucia A, Moro C, Pandey A, Robbins JM, Stanford KI, Thackray AE, Villeda S, Watt MJ, Xia A, Zierath JR, Goodpaster BH, Snyder MP | Nature reviews. Endocrinology | 35304603 | Nat Rev Endocrinol | 2022 May |
| Dynamic DNA methylation: In the right place at the right time. | Luo C, Hajkova P, Ecker JR | Science (New York, N.Y.) | 30262495 | Science | 2018 Sep 28 |
| Nonsense-mediated decay is highly stable across individuals and tissues. | Teran NA, Nachun DC, Eulalio T, Ferraro NM, Smail C, Rivas MA, Montgomery SB | American journal of human genetics | 34216550 | Am J Hum Genet | 2021 Aug 5 |
| Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurvivors. | Evans CR, Karnovsky A, Puskarich MA, Michailidis G, Jones AE, Stringer KA | Journal of proteome research | 30895797 | J Proteome Res | 2019 May 3 |
| Higher mitochondrial oxidative capacity is the primary molecular differentiator in muscle of rats with high and low intrinsic cardiorespiratory fitness. | Fleischman JY, Van den Bergh F, Collins NL, Bowers M, Beard DA, Burant CF | Molecular metabolism | 37625738 | Mol Metab | 2023 Oct |
| International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis. | Thompson JW, Adams KJ, Adamski J, Asad Y, Borts D, Bowden JA, Byram G, Dang V, Dunn WB, Fernandez F, Fiehn O, Gaul DA, Hühmer AF, Kalli A, Koal T, Koeniger S, Mandal R, Meier F, Naser FJ, O'Neil D, Pal A, Patti GJ, Pham-Tuan H, Prehn C, Raynaud FI, Shen T, Southam AD, St John-Williams L, Sulek K, Vasilopoulou CG, Viant M, Winder CL, Wishart D, Zhang L, Zheng J, Moseley MA | Analytical chemistry | 31638379 | Anal Chem | 2019 Nov 19 |
| Mass Spectrometry-Based Non-targeted Metabolic Profiling for Disease Detection: Recent Developments. | Zang X, Monge ME, Fernández FM | Trends in analytical chemistry : TRAC | 32831436 | Trends Analyt Chem | 2019 Sep |
| Ambient mass spectrometry in metabolomics. | Clendinen CS, Monge ME, Fernández FM | The Analyst | 28792022 | Analyst | 2017 Aug 21 |
| Triboelectric Nanogenerators: Low-Cost Power Supplies for Improved Electrospray Ionization. | Vallejo DD, Corstvet JL, Fernández FM | International journal of mass spectrometry | 38053979 | Int J Mass Spectrom | 2024 Jan |
| The COVID-19 MS Coalition-accelerating diagnostics, prognostics, and treatment. | Struwe W, Emmott E, Bailey M, Sharon M, Sinz A, Corrales FJ, Thalassinos K, Braybrook J, Mills C, Barran P, COVID-19 MS Coalition | Lancet (London, England) | 32473097 | Lancet | 2020 Jun 6 |
| Metabolomics and adductomics of newborn bloodspots to retrospectively assess the early-life exposome. | Petrick LM, Uppal K, Funk WE | Current opinion in pediatrics | 31913157 | Curr Opin Pediatr | 2020 Apr |
| Challenges in Identifying the Dark Molecules of Life. | Monge ME, Dodds JN, Baker ES, Edison AS, Fernández FM | Annual review of analytical chemistry (Palo Alto, Calif.) | 30883183 | Annu Rev Anal Chem (Palo Alto Calif) | 2019 Jun 12 |
| Triboelectric Nanogenerator Ion Mobility-Mass Spectrometry for In-Depth Lipid Annotation. | Bouza M, Li Y, Wang AC, Wang ZL, Fernández FM | Analytical chemistry | 33720699 | Anal Chem | 2021 Apr 6 |
| The HERITAGE Family Study: A Review of the Effects of Exercise Training on Cardiometabolic Health, with Insights into Molecular Transducers. | Sarzynski MA, Rice TK, Després JP, Pérusse L, Tremblay A, Stanforth PR, Tchernof A, Barber JL, Falciani F, Clish C, Robbins JM, Ghosh S, Gerszten RE, Leon AS, Skinner JS, Rao DC, Bouchard C | Medicine and science in sports and exercise | 35611651 | Med Sci Sports Exerc | 2022 May 1 |
| Metabolomics and Proteomics in Type 2 Diabetes. | Chen ZZ, Gerszten RE | Circulation research | 32437301 | Circ Res | 2020 May 22 |
| Rapid and deep-scale ubiquitylation profiling for biology and translational research. | Udeshi ND, Mani DC, Satpathy S, Fereshetian S, Gasser JA, Svinkina T, Olive ME, Ebert BL, Mertins P, Carr SA | Nature communications | 31953384 | Nat Commun | 2020 Jan 17 |
| Exercise, exerkines, and cardiometabolic health: from individual players to a team sport. | Robbins JM, Gerszten RE | The Journal of clinical investigation | 37395284 | J Clin Invest | 2023 Jul 3 |
| Exercise, exerkines, and cardiometabolic health: from individual players to a team sport. | Robbins JM, Gerszten RE | The Journal of clinical investigation | 37259917 | J Clin Invest | 2023 Jun 1 |
| CBL mutations drive PI3K/AKT signaling via increased interaction with LYN and PIK3R1. | Belizaire R, Koochaki SHJ, Udeshi ND, Vedder A, Sun L, Svinkina T, Hartigan C, McConkey M, Kovalcik V, Bizuayehu A, Stanclift C, Schenone M, Carr SA, Padron E, Ebert BL | Blood | 33512474 | Blood | 2021 Apr 22 |
| Plasma Metabolite Profiles in Response to Chronic Exercise. | Brennan AM, Benson M, Morningstar J, Herzig M, Robbins J, Gerszten RE, Ross R | Medicine and science in sports and exercise | 29509640 | Med Sci Sports Exerc | 2018 Jul |
| Emerging Affinity Reagents for High Throughput Proteomics: Trust, but Verify. | Benson MD, Ngo D, Ganz P, Gerszten RE | Circulation | 31710523 | Circulation | 2019 Nov 12 |
| Human plasma proteomic profiles indicative of cardiorespiratory fitness. | Robbins JM, Peterson B, Schranner D, Tahir UA, Rienmüller T, Deng S, Keyes MJ, Katz DH, Beltran PMJ, Barber JL, Baumgartner C, Carr SA, Ghosh S, Shen C, Jennings LL, Ross R, Sarzynski MA, Bouchard C, Gerszten RE | Nature metabolism | 34045743 | Nat Metab | 2021 Jun |
| Cardiovascular Risk Beyond Low-Density Lipoprotein Cholesterol. | Mayr M, Gerszten R, Kiechl S | Journal of the American College of Cardiology | 29420959 | J Am Coll Cardiol | 2018 Feb 13 |
| Dimethylguanidino valeric acid is a marker of liver fat and predicts diabetes. | O'Sullivan JF, Morningstar JE, Yang Q, Zheng B, Gao Y, Jeanfavre S, Scott J, Fernandez C, Zheng H, O'Connor S, Cohen P, Vasan RS, Long MT, Wilson JG, Melander O, Wang TJ, Fox C, Peterson RT, Clish CB, Corey KE, Gerszten RE | The Journal of clinical investigation | 29083323 | J Clin Invest | 2017 Dec 1 |
| Association of Dimethylguanidino Valeric Acid With Partial Resistance to Metabolic Health Benefits of Regular Exercise. | Robbins JM, Herzig M, Morningstar J, Sarzynski MA, Cruz DE, Wang TJ, Gao Y, Wilson JG, Bouchard C, Rankinen T, Gerszten RE | JAMA cardiology | 31166569 | JAMA Cardiol | 2019 Jul 1 |
| Proteomic profiling platforms head to head: Leveraging genetics and clinical traits to compare aptamer- and antibody-based methods. | Katz DH, Robbins JM, Deng S, Tahir UA, Bick AG, Pampana A, Yu Z, Ngo D, Benson MD, Chen ZZ, Cruz DE, Shen D, Gao Y, Bouchard C, Sarzynski MA, Correa A, Natarajan P, Wilson JG, Gerszten RE | Science advances | 35984888 | Sci Adv | 2022 Aug 19 |
| Author Correction: Human plasma proteomic profiles indicative of cardiorespiratory fitness. | Robbins JM, Peterson B, Schranner D, Tahir UA, Rienmüller T, Deng S, Keyes MJ, Katz DH, Beltran PMJ, Barber JL, Baumgartner C, Carr SA, Ghosh S, Shen C, Jennings LL, Ross R, Sarzynski MA, Bouchard C, Gerszten RE | Nature metabolism | 34446928 | Nat Metab | 2021 Sep |
| Protein-metabolite association studies identify novel proteomic determinants of metabolite levels in human plasma. | Benson MD, Eisman AS, Tahir UA, Katz DH, Deng S, Ngo D, Robbins JM, Hofmann A, Shi X, Zheng S, Keyes M, Yu Z, Gao Y, Farrell L, Shen D, Chen ZZ, Cruz DE, Sims M, Correa A, Tracy RP, Durda P, Taylor KD, Liu Y, Johnson WC, Guo X, Yao J, Chen YI, Manichaikul AW, Jain D, Yang Q, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Bouchard C, Sarzynski MA, Rich SS, Rotter JI, Wang TJ, Wilson JG, Clish CB, Sarkar IN, Natarajan P, Gerszten RE | Cell metabolism | 37582364 | Cell Metab | 2023 Sep 5 |
| TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach. | Zecha J, Satpathy S, Kanashova T, Avanessian SC, Kane MH, Clauser KR, Mertins P, Carr SA, Kuster B | Molecular & cellular proteomics : MCP | 30967486 | Mol Cell Proteomics | 2019 Jul |
| Succinate links atrial dysfunction and cardioembolic stroke. | Nelson SE, Ament Z, Wolcott Z, Gerszten RE, Kimberly WT | Neurology | 30674589 | Neurology | 2019 Feb 19 |
| Omics-driven investigation of the biology underlying intrinsic submaximal working capacity and its trainability. | Hota M, Barber JL, Ruiz-Ramie JJ, Schwartz CS, Lam DTUH, Rao P, Mi MY, Katz DH, Robbins JM, Clish CB, Gerszten RE, Sarzynski MA, Ghosh S, Bouchard C | Physiological genomics | 37661925 | Physiol Genomics | 2023 Nov 1 |
| Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk. | Castel SE, Cervera A, Mohammadi P, Aguet F, Reverter F, Wolman A, Guigo R, Iossifov I, Vasileva A, Lappalainen T | Nature genetics | 30127527 | Nat Genet | 2018 Sep |
| A vast resource of allelic expression data spanning human tissues. | Castel SE, Aguet F, Mohammadi P, GTEx Consortium, Ardlie KG, Lappalainen T | Genome biology | 32912332 | Genome Biol | 2020 Sep 11 |
| Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data. | Mao W, Pouyan MB, Kostka D, Chikina M | Bioinformatics (Oxford, England) | 35561207 | Bioinformatics | 2022 May 13 |
| Comprehensive interrogation of human skeletal muscle reveals a dissociation between insulin resistance and mitochondrial capacity. | Whytock KL, Pino MF, Sun Y, Yu G, De Carvalho FG, Yeo RX, Vega RB, Parmar G, Divoux A, Kapoor N, Yi F, Cornnell H, Patten DA, Harper ME, Gardell SJ, Smith SR, Walsh MJ, Sparks LM | American journal of physiology. Endocrinology and metabolism | 37584609 | Am J Physiol Endocrinol Metab | 2023 Oct 1 |
| Dissecting aortic aneurysm in Marfan syndrome is associated with losartan-sensitive transcriptomic modulation of aortic cells. | Sun Y, Asano K, Sedes L, Cantalupo A, Hansen J, Iyengar R, Walsh MJ, Ramirez F | JCI insight | 37022786 | JCI Insight | 2023 May 22 |
| An intrinsically interpretable neural network architecture for sequence-to-function learning. | Balcı AT, Ebeid MM, Benos PV, Kostka D, Chikina M | Bioinformatics (Oxford, England) | 37387140 | Bioinformatics | 2023 Jun 30 |
| Sedentary and Trained Older Men Have Distinct Circulating Exosomal microRNA Profiles at Baseline and in Response to Acute Exercise. | Nair VD, Ge Y, Li S, Pincas H, Jain N, Seenarine N, Amper MAS, Goodpaster BH, Walsh MJ, Coen PM, Sealfon SC | Frontiers in physiology | 32587527 | Front Physiol | 2020 |
| Single-cell transcriptional profiles in human skeletal muscle. | Rubenstein AB, Smith GR, Raue U, Begue G, Minchev K, Ruf-Zamojski F, Nair VD, Wang X, Zhou L, Zaslavsky E, Trappe TA, Trappe S, Sealfon SC | Scientific reports | 31937892 | Sci Rep | 2020 Jan 14 |
| Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations. | Kim-Hellmuth S, Bechheim M, Pütz B, Mohammadi P, Nédélec Y, Giangreco N, Becker J, Kaiser V, Fricker N, Beier E, Boor P, Castel SE, Nöthen MM, Barreiro LB, Pickrell JK, Müller-Myhsok B, Lappalainen T, Schumacher J, Hornung V | Nature communications | 28814792 | Nat Commun | 2017 Aug 16 |
| DataRemix: a universal data transformation for optimal inference from gene expression datasets. | Mao W, Rahimikollu J, Hausler R, Chikina M | Bioinformatics (Oxford, England) | 32821903 | Bioinformatics | 2021 May 17 |
| Pathway-level information extractor (PLIER) for gene expression data. | Mao W, Zaslavsky E, Hartmann BM, Sealfon SC, Chikina M | Nature methods | 31249421 | Nat Methods | 2019 Jul |
| Heterogeneous origins and functions of mouse skeletal muscle-resident macrophages. | Wang X, Sathe AA, Smith GR, Ruf-Zamojski F, Nair V, Lavine KJ, Xing C, Sealfon SC, Zhou L | Proceedings of the National Academy of Sciences of the United States of America | 32796104 | Proc Natl Acad Sci U S A | 2020 Aug 25 |
| A micromachined force sensing apparatus and method for human engineered cardiac tissue and induced pluripotent stem cell characterization. | Turnbull IC, Zhu W, Stillitano F, Chien CC, Gaitas A | Sensors and actuators. A, Physical | 34305317 | Sens Actuators A Phys | 2021 Nov 1 |
| Transcriptome variation in human tissues revealed by long-read sequencing. | Glinos DA, Garborcauskas G, Hoffman P, Ehsan N, Jiang L, Gokden A, Dai X, Aguet F, Brown KL, Garimella K, Bowers T, Costello M, Ardlie K, Jian R, Tucker NR, Ellinor PT, Harrington ED, Tang H, Snyder M, Juul S, Mohammadi P, MacArthur DG, Lappalainen T, Cummings BB | Nature | 35922509 | Nature | 2022 Aug |
| AFM Microfluidic Cantilevers as Weight Sensors for Live Single Cell Mass Measurements. | Chien CC, Jiang J, Gong B, Li T, Gaitas A | Measurement science & technology | 35832465 | Meas Sci Technol | 2022 Sep |
| Skeletal muscle transcriptional networks linked to type I myofiber grouping in Parkinson's disease. | Lavin KM, Sealfon SC, McDonald MN, Roberts BM, Wilk K, Nair VD, Ge Y, Lakshman Kumar P, Windham ST, Bamman MM | Journal of applied physiology (Bethesda, Md. : 1985) | 31829804 | J Appl Physiol (1985) | 2020 Feb 1 |
| Rehabilitative Impact of Exercise Training on Human Skeletal Muscle Transcriptional Programs in Parkinson's Disease. | Lavin KM, Ge Y, Sealfon SC, Nair VD, Wilk K, McAdam JS, Windham ST, Kumar PL, McDonald MN, Bamman MM | Frontiers in physiology | 32625117 | Front Physiol | 2020 |
| A size-exclusion-based approach for purifying extracellular vesicles from human plasma. | Vanderboom PM, Dasari S, Ruegsegger GN, Pataky MW, Lucien F, Heppelmann CJ, Lanza IR, Nair KS | Cell reports methods | 34355211 | Cell Rep Methods | 2021 Jul 26 |
| Insulin deficiency and intranasal insulin alter brain mitochondrial function: a potential factor for dementia in diabetes. | Ruegsegger GN, Manjunatha S, Summer P, Gopala S, Zabeilski P, Dasari S, Vanderboom PM, Lanza IR, Klaus KA, Nair KS | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 30676773 | FASEB J | 2019 Mar |
| Rapid report on using data to make standardized decisions about enrollment during the COVID-19 pandemic: perspectives from the MoTrPAC study. | George SM, Chen H, Miller ME, Rejeski WJ, Stowe CL, Webb C, Kraus WE, Musi N, Jakicic JM | Annals of epidemiology | 33957248 | Ann Epidemiol | 2021 Oct |
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