Metabolomics
Metabolomics
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Authors | Journal | PubMedID | Publication Date |
|---|---|---|---|---|
| XCMS Online: a web-based platform to process untargeted metabolomic data. | Tautenhahn, Ralf; Patti, Gary J; Rinehart, Duane; Siuzdak, Gary | Analytical chemistry. | 22533540 | 2012 Jun 5; |
| A short-term diet and exercise intervention ameliorates inflammation and markers of metabolic health in overweight/obese children. | Izadpanah, Ali; Barnard, R James; Almeda, Anna Jane E; Baldwin, Gayle C; Bridges, Sydney A; Shellman, Erin R; Burant, Charles F; Roberts, Christian K | American journal of physiology. Endocrinology and metabolism. | 22713506 | 2012 Aug 15; |
| Platelet mRNA: the meaning behind the message. | Rowley, Jesse W; Schwertz, Hansjorg; Weyrich, Andrew S | Current opinion in hematology | 22814651 | 2012 Sep |
| Association of plasma ýý-3 and ýý-6 lipids with burden of disease measures in bipolar subjects. | Evans, Simon J; Kamali, Masoud; Prossin, Alan R; Harrington, Gloria J; Ellingrod, Vicki L; McInnis, Melvin G; Burant, Charles F | Journal of psychiatric research. | 22884424 | 2012 Nov; |
| Mammalian target of rapamycin regulates neutrophil extracellular trap formation via induction of hypoxia-inducible factor 1 ýý. | McInturff, Alison M; Cody, Mark J; Elliott, Elizabeth A; Glenn, Jared W; Rowley, Jesse W; Rondina, Matthew T; Yost, Christian C | Blood | 22919032 | 2012 Oct 11 |
| An accelerated workflow for untargeted metabolomics using the METLIN database. | Tautenhahn, Ralf; Cho, Kevin; Uritboonthai, Winnie; Zhu, Zhengjiang; Patti, Gary J; Siuzdak, Gary | Nature biotechnology. | 22965049 | 2012 Sep; |
| Maximizing the value of metabolomic data. | Goeddel, L C; Patti, G J | Bioanalysis | 23046261 | 2012 Sep |
| Addressing the current bottlenecks of metabolomics: Isotopic Ratio Outlier Analysisýýý, an isotopic-labeling technique for accurate biochemical profiling. | de Jong, Felice A; Beecher, Chris | Bioanalysis. | 23046270 | 2012 Sep; |
| Decreased glycolytic and tricarboxylic acid cycle intermediates coincide with peripheral nervous system oxidative stress in a murine model of type 2 diabetes. | Hinder, Lucy M; Vivekanandan-Giri, Anuradha; McLean, Lisa L; Pennathur, Subramaniam; Feldman, Eva L | The Journal of endocrinology | 23086140 | 2013 Jan |
| Pulmonary instillation of multi-walled carbon nanotubes promotes coronary vasoconstriction and exacerbates injury in isolated hearts. | Thompson, Leslie C; Frasier, Chad R; Sloan, Ruben C; Mann, Erin E; Harrison, Benjamin S; Brown, Jared M; Brown, David A; Wingard, Christopher J | Nanotoxicology. | 23102262 | 2014 Feb; |
| A Carbonyl Capture Approach for Profiling Oxidized Metabolites in Cell Extracts. | Mattingly, Stephanie J; Xu, Tao; Nantz, Michael H; Higashi, Richard M; Fan, Teresa W-M | Metabolomics : Official journal of the Metabolomic Society. | 23175637 | 2012; |
| Metabolomics: an essential tool to understand the function of peroxisome proliferator-activated receptor alpha. | Montanez, Jessica E; Peters, Jeffrey M; Correll, Jared B; Gonzalez, Frank J; Patterson, Andrew D | Toxicologic pathology | 23197196 | 2013 Feb |
| A view from above: cloud plots to visualize global metabolomic data. | Patti, Gary J; Tautenhahn, Ralf; Rinehart, Duane; Cho, Kevin; Shriver, Leah P; Manchester, Marianne; Nikolskiy, Igor; Johnson, Caroline H; Mahieu, Nathaniel G; Siuzdak, Gary | Analytical chemistry. | 23206250 | 2013 Jan 15; |
| Microbial metabolic exchange in 3D. | Watrous, Jeramie D; Phelan, Vanessa V; Hsu, Cheng-Chih; Moree, Wilna J; Duggan, Brendan M; Alexandrov, Theodore; Dorrestein, Pieter C | The ISME journal | 23283018 | 2013 Apr |
| Network motifs provide signatures that characterize metabolism. | Shellman, Erin R; Burant, Charles F; Schnell, Santiago | Molecular bioSystems | 23287894 | 2013 Mar |
| Stable isotope- and mass spectrometry-based metabolomics as tools in drug metabolism: a study expanding tempol pharmacology. | Li, Fei; Pang, Xiaoyan; Krausz, Kristopher W; Jiang, Changtao; Chen, Chi; Cook, John A; Krishna, Murali C; Mitchell, James B; Gonzalez, Frank J; Patterson, Andrew D | Journal of proteome research | 23301521 | 2013 Mar 1 |
| High density lipoprotein is targeted for oxidation by myeloperoxidase in rheumatoid arthritis. | Vivekanandan-Giri, Anuradha; Slocum, Jessica L; Byun, Jaeman; Tang, Chongren; Sands, Robin L; Gillespie, Brenda W; Heinecke, Jay W; Saran, Rajiv; Kaplan, Mariana J; Pennathur, Subramaniam | Annals of the rheumatic diseases | 23313808 | 2013 Jan 12 |
| Mass spectrometry theory and application to adrenal diseases. | Wooding, Kerry M; Auchus, Richard J | Molecular and cellular endocrinology | 23333773 | 2013 May 22 |
| Perinatal bisphenol A exposure promotes hyperactivity, lean body composition, and hormonal responses across the murine life course. | Anderson, Olivia S; Peterson, Karen E; Sanchez, Brisa N; Zhang, Zhenzhen; Mancuso, Peter; Dolinoy, Dana C | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 23345456 | 2013 Apr |
| Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database. | Zhu, Zheng-Jiang; Schultz, Andrew W; Wang, Junhua; Johnson, Caroline H; Yannone, Steven M; Patti, Gary J; Siuzdak, Gary | Nature protocols | 23391889 | 2013 Mar |
| ZBP-89 regulates expression of tryptophan hydroxylase I and mucosal defense against Salmonella typhimurium in mice. | Essien, Bryan E; Grasberger, Helmut; Romain, Rachael D; Law, David J; Veniaminova, Natalia A; Saqui-Salces, Milena; El-Zaatari, Mohamad; Tessier, Arthur; Hayes, Michael M; Yang, Alexander C; Merchant, Juanita L | Gastroenterology | 23395646 | 2013 Jun |
| The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors. | Dougherty, Joseph D; Maloney, Susan E; Wozniak, David F; Rieger, Michael A; Sonnenblick, Lisa; Coppola, Giovanni; Mahieu, Nathaniel G; Zhang, Juliet; Cai, Jinlu; Patti, Gary J; Abrahams, Brett S; Geschwind, Daniel H; Heintz, Nathaniel | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 23407934 | 2013 Feb 13; |
| The isotridecanyl side chain of plusbacin-A3 is essential for the transglycosylase inhibition of peptidoglycan biosynthesis. | Kim, Sung Joon; Singh, Manmilan; Wohlrab, Aaron; Yu, Tsyr-Yan; Patti, Gary J; O'Connor, Robert D; VanNieuwenhze, Michael; Schaefer, Jacob | Biochemistry | 23421534 | 2013 Mar 19 |
| Metabolome response to glucose in the ýý-cell line INS-1 832/13. | Lorenz, Matthew A; El Azzouny, Mahmoud A; Kennedy, Robert T; Burant, Charles F | The Journal of biological chemistry | 23426361 | 2013 Apr 12 |
| Loss of FBP1 by Snail-mediated repression provides metabolic advantages in basal-like breast cancer. | Dong, Chenfang; Yuan, Tingting; Wu, Yadi; Wang, Yifan; Fan, Teresa W M; Miriyala, Sumitra; Lin, Yiwei; Yao, Jun; Shi, Jian; Kang, Tiebang; Lorkiewicz, Pawel; St Clair, Daret; Hung, Mien-Chie; Evers, B Mark; Zhou, Binhua P | Cancer cell | 23453623 | 2013 Mar 18 |
| Mini-review: Lactoferrin: a bioinspired, anti-biofilm therapeutic. | Ammons, M C; Copie, V | Biofouling | 23574002 | 2013 |
| Optimization of harvesting, extraction, and analytical protocols for UPLC-ESI-MS-based metabolomic analysis of adherent mammalian cancer cells. | Bi, Huichang; Krausz, Kristopher W; Manna, Soumen K; Li, Fei; Johnson, Caroline H; Gonzalez, Frank J | Analytical and bioanalytical chemistry | 23604415 | 2013 Jun |
| Error Analysis and Propagation in Metabolomics Data Analysis. | Moseley, Hunter N B | Computational and structural biotechnology journal | 23667718 | 2013 Jan 1 |
| Anti-inflammatory Effects of Omega-3 Polyunsaturated Fatty Acids and Soluble Epoxide Hydrolase Inhibitors in Angiotensin-II Dependent Hypertension. | Ulu, Arzu; Harris, Todd R; Morisseau, Christophe; Miyabe, Christina; Inoue, Hiromi; Schuster, Gertrud; Dong, Hua; Iosif, Ana-Maria; Liu, Jun-Yan; Weiss, Robert H; Chiamvimonvat, Nipavan; Imig, John D; Hammock, Bruce D | Journal of cardiovascular pharmacology | 23676336 | 2013 May 14 |
| Comparison of free serum oxylipin concentrations in hyper- vs. normolipidemic men. | Schuchardt, Jan Philipp; Schmidt, Simone; Kressel, Gaby; Dong, Hua; Willenberg, Ina; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils Helge | Prostaglandins, leukotrienes, and essential fatty acids | 23694766 | 2013 Jul |
| HR-MAS NMR Tissue Metabolomic Signatures Cross-validated by Mass Spectrometry Distinguish Bladder Cancer from Benign Disease. | Tripathi, Pratima; Somashekar, Bagganahalli S; Ponnusamy, M; Gursky, Amy; Dailey, Stephen; Kunju, Priya; Lee, Cheryl T; Chinnaiyan, Arul M; Rajendiran, Thekkelnaycke M; Ramamoorthy, Ayyalusamy | Journal of proteome research | 23731241 | 2013 Jul 5 |
| Toward 'omic scale metabolite profiling: a dual separation-mass spectrometry approach for coverage of lipid and central carbon metabolism. | Ivanisevic, Julijana; Zhu, Zheng-Jiang; Plate, Lars; Tautenhahn, Ralf; Chen, Stephen; O'Brien, Peter J; Johnson, Caroline H; Marletta, Michael A; Patti, Gary J; Siuzdak, Gary | Analytical chemistry | 23781873 | 2013 Jul 16 |
| MS/MS networking guided analysis of molecule and gene cluster families. | Nguyen, Don Duy; Wu, Cheng-Hsuan; Moree, Wilna J; Lamsa, Anne; Medema, Marnix H; Zhao, Xiling; Gavilan, Ronnie G; Aparicio, Marystella; Atencio, Librada; Jackson, Chanaye; Ballesteros, Javier; Sanchez, Joel; Watrous, Jeramie D; Phelan, Vanessa V; van de W | Proceedings of the National Academy of Sciences of the United States of America | 23798442 | 2013 Jul 9 |
| Coordinate expression of transcripts and proteins in platelets. | Rowley, Jesse W; Weyrich, Andrew S | Blood | 23813941 | 2013 Jun 27 |
| Integrated phosphoproteomic and metabolomic profiling reveals NPM-ALK-mediated phosphorylation of PKM2 and metabolic reprogramming in anaplastic large cell lymphoma. | McDonnell, Scott R P; Hwang, Steven R; Rolland, Delphine; Murga-Zamalloa, Carlos; Basrur, Venkatesha; Conlon, Kevin P; Fermin, Damian; Wolfe, Thomas; Raskind, Alexander; Ruan, Chunhai; Jiang, Jian-Kang; Thomas, Craig J; Hogaboam, Cory M; Burant, Charles F | Blood | 23814019 | 2013 Jun 27 |
| Niemann-pick type C2 deficiency in human fibroblasts confers robust and selective activation of prostaglandin E2 biosynthesis. | Frolov, Andrey; Dong, Hua; Jiang, Min; Yang, Lihua; Cook, Erik C; Matnani, Rahul; Hammock, Bruce D; Crofford, Leslie J | The Journal of biological chemistry | 23814065 | 2013 Aug 16 |
| LipidBlast in silico tandem mass spectrometry database for lipid identification. | Kind, Tobias; Liu, Kwang-Hyeon; Lee, Do Yup; Defelice, Brian; Meissen, John K; Fiehn, Oliver | Nature methods | 23817071 | 2013 Aug |
| Nutritional lipidomics: molecular metabolism, analytics, and diagnostics. | Smilowitz, Jennifer T; Zivkovic, Angela M; Wan, Yu-Jui Yvonne; Watkins, Steve M; Nording, Malin L; Hammock, Bruce D; German, J Bruce | Molecular nutrition & food research | 23818328 | 2013 Aug |
| An untargeted metabolomic workflow to improve structural characterization of metabolites. | Nikolskiy, Igor; Mahieu, Nathaniel G; Chen, Ying-Jr; Tautenhahn, Ralf; Patti, Gary J | Analytical chemistry | 23829391 | 2013 Aug 20 |
| Profiling targets of the irreversible palmitoylation inhibitor 2-bromopalmitate. | Davda, Dahvid; El Azzouny, Mahmoud A; Tom, Christopher T M B; Hernandez, Jeannie L; Majmudar, Jaimeen D; Kennedy, Robert T; Martin, Brent R | ACS chemical biology | 23844586 | 2013 Sep 20 |
| Cortisol response to operative stress with anesthesia in healthy children. | Taylor, Lisa K; Auchus, Richard J; Baskin, Laurence S; Miller, Walter L | The Journal of clinical endocrinology and metabolism | 23861461 | 2013 Sep |
| Pharmacometabolomic signature of ataxia SCA1 mouse model and lithium effects. | Perroud, Bertrand; Jafar-Nejad, Paymaan; Wikoff, William R; Gatchel, Jennifer R; Wang, Lu; Barupal, Dinesh K; Crespo-Barreto, Juan; Fiehn, Oliver; Zoghbi, Huda Y; Kaddurah-Daouk, Rima | PloS one | 23936457 | 2013 |
| Mechanism of formation of the major estradiol product ions following collisional activation of the molecular anion in a tandem quadrupole mass spectrometer. | Wooding, Kerry M; Barkley, Robert M; Hankin, Joseph A; Johnson, Christopher A; Bradford, Andrew P; Santoro, Nanette; Murphy, Robert C | Journal of the American Society for Mass Spectrometry | 23955001 | 2013 Oct |
| Metabolite profile analysis reveals functional effects of 28-day vitamin B-6 restriction on one-carbon metabolism and tryptophan catabolic pathways in healthy men and women. | da Silva, Vanessa R; Rios-Avila, Luisa; Lamers, Yvonne; Ralat, Maria A; Midttun, Øivind; Quinlivan, Eoin P; Garrett, Timothy J; Coats, Bonnie; Shankar, Meena N; Percival, Susan S; Chi, Yueh-Yun; Muller, Keith E; Ueland, Per Magne; Stacpoole, Peter W; Gregory 3rd, Jesse F | The Journal of nutrition | 23966327 | 2013 Nov |
| Preparation of 20-HETE using multifunctional enzyme type 2-negative Starmerella bombicola. | Van Bogaert, Inge; Zhang, Guodong; Yang, Jun; Liu, Jun-Yan; Ye, Yonghao; Soetaert, Wim; Hammock, Bruce D | Journal of lipid research | 23966667 | 2013 Nov |
| Long-Chain Acyl Coenzyme A Synthetase 1 Overexpression in Primary Cultured Schwann Cells Prevents Long Chain Fatty Acid-Induced Oxidative Stress and Mitochondrial Dysfunction. | Hinder, Lucy M; Figueroa-Romero, Claudia; Pacut, Crystal; Hong, Yu; Vivekanandan-Giri, Anuradha; Pennathur, Subramaniam; Feldman, Eva L | Antioxidants & redox signaling | 23991914 | 2013 Oct 5 |
| LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. | Crowell, Kevin L; Slysz, Gordon W; Baker, Erin S; LaMarche, Brian L; Monroe, Matthew E; Ibrahim, Yehia M; Payne, Samuel H; Anderson, Gordon A; Smith, Richard D | Bioinformatics (Oxford, England) | 24008421 | 2013 Nov 1 |
| Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus. | Smilowitz, Jennifer T; Totten, Sarah M; Huang, Jincui; Grapov, Dmitry; Durham, Holiday A; Lammi-Keefe, Carol J; Lebrilla, Carlito; German, J Bruce | The Journal of nutrition | 24047700 | 2013 Dec |
| Mitochondrial protein acetylation as a cell-intrinsic, evolutionary driver of fat storage: chemical and metabolic logic of acetyl-lysine modifications. | Ghanta, Sirisha; Grossmann, Ruth E; Brenner, Charles | Critical reviews in biochemistry and molecular biology | 24050258 | 2013 Nov-Dec |
| Anti-inflammatory properties of prostaglandin E2: deletion of microsomal prostaglandin E synthase-1 exacerbates non-immune inflammatory arthritis in mice. | Frolov, Andrey; Yang, Lihua; Dong, Hua; Hammock, Bruce D; Crofford, Leslie J | Prostaglandins, leukotrienes, and essential fatty acids | 24055573 | 2013 Oct |
| Artificial sweeteners stimulate adipogenesis and suppress lipolysis independently of sweet taste receptors. | Simon, Becky R; Parlee, Sebastian D; Learman, Brian S; Mori, Hiroyuki; Scheller, Erica L; Cawthorn, William P; Ning, Xiaomin; Gallagher, Katherine; Tyrberg, Björn; Assadi-Porter, Fariba M; Evans, Charles R; MacDougald, Ormond A | The Journal of biological chemistry | 24068707 | 2013 Nov 08 |
| Tilapia (Oreochromis mossambicus) brain cells respond to hyperosmotic challenge by inducing myo-inositol biosynthesis. | Gardell, Alison M; Yang, Jun; Sacchi, Romina; Fangue, Nann A; Hammock, Bruce D; Kultz, Dietmar | The Journal of experimental biology | 24072790 | 2013 Dec 15 |
| 2-Aminoadipic acid is a biomarker for diabetes risk. | Wang, Thomas J; Ngo, Debby; Psychogios, Nikolaos; Dejam, Andre; Larson, Martin G; Vasan, Ramachandran S; Ghorbani, Anahita; O'Sullivan, John; Cheng, Susan; Rhee, Eugene P; Sinha, Sumita; McCabe, Elizabeth; Fox, Caroline S; O'Donnell, Christopher J; Ho, Jennifer E; Florez, Jose C; Magnusson, Martin; Pierce, Kerry A; Souza, Amanda L; Yu, Yi; Carter, Christian; Light, Peter E; Melander, Olle; Clish, Clary B; Gerszten, Robert E | The Journal of clinical investigation. | 24091325 | 2013 Oct; |
| Dietary long-chain omega-3 fatty acids do not diminish eosinophilic pulmonary inflammation in mice. | Schuster, Gertrud U; Bratt, Jennifer M; Jiang, Xiaowen; Pedersen, Theresa L; Grapov, Dmitry; Adkins, Yuriko; Kelley, Darshan S; Newman, John W; Kenyon, Nicholas J; Stephensen, Charles B | American journal of respiratory cell and molecular biology | 24134486 | 2014 Mar |
| A Metabolomics Investigation of Non-genotoxic Carcinogenicity in the Rat. | Ament, Zsuzsanna; Waterman, Claire L; West, James A; Waterfield, Catherine; Currie, Richard A; Wright, Jayne; Griffin, Julian L | Journal of proteome research | 24161236 | 2013 Dec 6 |
| Individual variation in lipidomic profiles of healthy subjects in response to omega-3 Fatty acids. | Nording, Malin L; Yang, Jun; Georgi, Katrin; Hegedus Karbowski, Christine; German, J Bruce; Weiss, Robert H; Hogg, Ronald J; Trygg, Johan; Hammock, Bruce D; Zivkovic, Angela M | PloS one | 24204640 | 2013 |
| Treatment of mice with 2,3,7,8-Tetrachlorodibenzo-p-dioxin markedly increases the levels of a number of cytochrome P450 metabolites of omega-3 polyunsaturated fatty acids in the liver and lung. | Yang, Jun; Solaimani, Parrisa; Dong, Hua; Hammock, Bruce; Hankinson, Oliver | The Journal of toxicological sciences | 24213002 | 2013 |
| Isotopic Ratio Outlier Analysis Global Metabolomics of Caenorhabditis elegans. | Stupp, Gregory S; Clendinen, Chaevien S; Ajredini, Ramadan; Szewc, Mark A; Garrett, Timothy; Menger, Robert F; Yost, Richard A; Beecher, Chris; Edison, Arthur S | Analytical chemistry | 24274725 | 2013 Dec 17 |
| Monitoring metabolic responses to chemotherapy in single cells and tumors using nanostructure-initiator mass spectrometry (NIMS) imaging. | O'Brien, Peter J; Lee, Michelle; Spilker, Mary E; Zhang, Cathy C; Yan, Zhengming; Nichols, Timothy C; Li, Wenlin; Johnson, Caroline H; Patti, Gary J; Siuzdak, Gary | Cancer & metabolism | 24280026 | 2013 |
| Untargeted LC-MS metabolomics of bronchoalveolar lavage fluid differentiates acute respiratory distress syndrome from health. | Evans, Charles R; Karnovsky, Alla; Kovach, Melissa A; Standiford, Theodore J; Burant, Charles F; Stringer, Kathleen A | Journal of proteome research | 24289193 | 2014 Feb 7 |
| Soluble epoxide hydrolase deficiency inhibits dextran sulfate sodium-induced colitis and carcinogenesis in mice. | Zhang, Wanying; Li, Haonan; Dong, Hua; Liao, Jie; Hammock, Bruce D; Yang, Guang-Yu | Anticancer research | 24324059 | 2013 Dec |
| Microbial and metabolic interactions between the gastrointestinal tract and Clostridium difficile infection. | Theriot, Casey M; Young, Vincent B | Gut microbes. | 24335555 | 2014 Jan-Feb; |
| Key role of microRNA in the regulation of granulocyte macrophage colony-stimulating factor expression in murine alveolar epithelial cells during oxidative stress. | Sturrock, Anne; Mir-Kasimov, Mustafa; Baker, Jessica; Rowley, Jesse; Paine 3rd, Robert | The Journal of biological chemistry | 24371146 | 2014 Feb 14 |
| X13CMS: global tracking of isotopic labels in untargeted metabolomics. | Huang, Xiaojing; Chen, Ying-Jr; Cho, Kevin; Nikolskiy, Igor; Crawford, Peter A; Patti, Gary J | Analytical chemistry | 24397582 | 2014 Feb 4 |
| Establishing 3-nitrotyrosine as a biomarker for the vasculopathy of Fabry disease. | Shu, Liming; Vivekanandan-Giri, Anuradha; Pennathur, Subramaniam; Smid, Bouwien E; Aerts, Johannes M F G; Hollak, Carla E M; Shayman, James A | Kidney international. | 24402087 | 2014 Jul; |
| Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry. | Baker, Erin Shammel; Burnum-Johnson, Kristin E; Jacobs, Jon M; Diamond, Deborah L; Brown, Roslyn N; Ibrahim, Yehia M; Orton, Daniel J; Piehowski, Paul D; Purdy, David E; Moore, Ronald J; Danielson 3rd, William F; Monroe, Matthew E; Crowell, Kevin L; Slysz | Molecular & cellular proteomics : MCP | 24403597 | 2014 Apr |
| A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets. | Carreer, William J; Flight, Robert M; Moseley, Hunter N B | Metabolites | 24404440 | 2013 Sep 25 |
| Modulation of blood oxylipin levels by long-chain omega-3 fatty acid supplementation in hyper- and normolipidemic men. | Schuchardt, Jan Philipp; Schmidt, Simone; Kressel, Gaby; Willenberg, Ina; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils Helge | Prostaglandins, leukotrienes, and essential fatty acids | 24411718 | 2014 Feb-Mar |
| Improved metabolic health alters host metabolism in parallel with changes in systemic xeno-metabolites of gut origin. | Campbell, Caitlin; Grapov, Dmitry; Fiehn, Oliver; Chandler, Carol J; Burnett, Dustin J; Souza, Elaine C; Casazza, Gretchen A; Gustafson, Mary B; Keim, Nancy L; Newman, John W; Hunter, Gary R; Fernandez, Jose R; Garvey, W Timothy; Harper, Mary-Ellen; Hoppe | PloS one | 24416208 | 2014 |
| Uremic solutes and risk of end-stage renal disease in type 2 diabetes: metabolomic study. | Niewczas, Monika A; Sirich, Tammy L; Mathew, Anna V; Skupien, Jan; Mohney, Robert P; Warram, James H; Smiles, Adam; Huang, Xiaoping; Walker, Walker; Byun, Jaeman; Karoly, Edward D; Kensicki, Elizabeth M; Berry, Gerard T; Bonventre, Joseph V; Pennathur, Su | Kidney international | 24429397 | 2014 Jan 15 |
| Cýýýýýý exposure augments cardiac ischemia/reperfusion injury and coronary artery contraction in Sprague Dawley rats. | Thompson, Leslie C; Urankar, Rakhee N; Holland, Nathan A; Vidanapathirana, Achini K; Pitzer, Joshua E; Han, Li; Sumner, Susan J; Lewin, Anita H; Fennell, Timothy R; Lust, Robert M; Brown, Jared M; Wingard, Christopher J | Toxicological sciences : an official journal of the Society of Toxicology. | 24431213 | 2014 Apr; |
| Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection. | Theriot, Casey M; Koenigsknecht, Mark J; Carlson Jr, Paul E; Hatton, Gabrielle E; Nelson, Adam M; Li, Bo; Huffnagle, Gary B; Z Li, Jun; Young, Vincent B | Nature communications | 24445449 | 2014 |
| Administration of saccharin to neonatal mice influences body composition of adult males and reduces body weight of females. | Parlee, Sebastian D; Simon, Becky R; Scheller, Erica L; Alejandro, Emilyn U; Learman, Brian S; Krishnan, Venkatesh; Bernal-Mizrachi, Ernesto; MacDougald, Ormond A | Endocrinology | 24456165 | 2014 Apr |
| A multimodal intervention for patients with secondary progressive multiple sclerosis: feasibility and effect on fatigue. | Bisht, Babita; Darling, Warren G; Grossmann, Ruth E; Shivapour, E Torage; Lutgendorf, Susan K; Snetselaar, Linda G; Hall, Michael J; Zimmerman, M Bridget; Wahls, Terry L | Journal of alternative and complementary medicine (New York, N.Y.). | 24476345 | 2014 May; |
| Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdom interactions of Pseudomonas aeruginosa. | Phelan, Vanessa V; Moree, Wilna J; Aguilar, Julieta; Cornett, Dale S; Koumoutsi, Alexandra; Noble, Suzanne M; Pogliano, Kit; Guerrero, Carlos A; Dorrestein, Pieter C | Journal of bacteriology | 24532776 | 2014 May |
| Relationship of muscle sympathetic nerve activity to insulin sensitivity. | Curry, Timothy B; Hines, Casey N; Barnes, Jill N; Somaraju, Madhuri; Basu, Rita; Miles, John M; Joyner, Michael J; Charkoudian, Nisha | Clinical autonomic research : official journal of the Clinical Autonomic Research Society. | 24577625 | 2014 Apr; |
| Alteration of the murine gastrointestinal microbiota by tigecycline leads to increased susceptibility to Clostridium difficile infection. | Bassis, Christine M; Theriot, Casey M; Young, Vincent B | Antimicrobial agents and chemotherapy | 24590475 | 2014 May |
| Tracing phenolic metabolism in Vitis vinifera berries with 13C6-phenylalanine: implication of an unidentified intermediate reservoir. | Chassy, Alexander W; Adams, Douglas O; Waterhouse, Andrew L | Journal of agricultural and food chemistry | 24611798 | 2014 Mar 19 |
| Towards metabolic biomarkers of insulin resistance and type 2 diabetes: progress from the metabolome. | Roberts, Lee D; Koulman, Albert; Griffin, Julian L | The lancet. Diabetes & endocrinology | 24622670 | 2014 Jan |
| Accumulation of high-value lipids in single-cell microorganisms: a mechanistic approach and future perspectives. | Garay, Luis A; Boundy-Mills, Kyria L; German, J Bruce | Journal of agricultural and food chemistry | 24628496 | 2014 Apr 2 |
| Hypotension following patent ductus arteriosus ligation: the role of adrenal hormones. | Clyman, Ronald I; Wickremasinghe, Andrea; Merritt, T Allen; Solomon, Tabitha; McNamara, Patrick; Jain, Amish; Singh, Jaideep; Chu, Alison; Noori, Shahab; Sekar, Krishnamurthy; Lavoie, Pascal M; Attridge, Joshua T; Swanson, Jonathan R; Gillam-Krakauer, Mar | The Journal of pediatrics | 24636853 | 2014 Jun |
| Leucine modulates dynamic phosphorylation events in insulin signaling pathway and enhances insulin-dependent glycogen synthesis in human skeletal muscle cells. | Di Camillo, Barbara; Eduati, Federica; Nair, Sreekumaran K; Avogaro, Angelo; Toffolo, Gianna M | BMC cell biology. | 24646332 | 2014; |
| Modular organization of cardiac energy metabolism: energy conversion, transfer and feedback regulation. | Guzun, R; Kaambre, T; Bagur, R; Grichine, A; Usson, Y; Varikmaa, M; Anmann, T; Tepp, K; Timohhina, N; Shevchuk, I; Chekulayev, V; Boucher, F; Dos Santos, P; Schlattner, U; Wallimann, T; Kuznetsov, A V; Dzeja, P; Aliev, M; Saks, V | Acta physiologica (Oxford, England) | 24666671 | 2014 Mar 26 |
| Increase of EPA-derived hydroxy, epoxy and dihydroxy fatty acid levels in human plasma after a single dose of long-chain omega-3 PUFA. | Schuchardt, Jan Philipp; Schneider, Inga; Willenberg, Ina; Yang, Jun; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils Helge | Prostaglandins & other lipid mediators | 24667634 | 2014 Jun |
| Continuous 24-Hour Leptin, Proopiomelanocortin and Amino Acid Measurements in Human Cerebrospinal Fluid: Correlations with Plasma Leptin, Soluble Leptin Receptor and Amino Acid Levels. | Wardlaw, Sharon L; Burant, Charles F; Klein, Samuel; Meece, Kana; White, Anne; Kasten, Tom; Lucey, Brendan P; Bateman, Randall J | The Journal of clinical endocrinology and metabolism | 24670082 | 2014 Mar 26 |
| Increased Glucose Metabolism and Glycerolipid Formation by Fatty Acids and GPR40 Receptor Signaling Underlies the Fatty Acid Potentiation of Insulin Secretion. | El-Azzouny, Mahmoud; Evans, Charles R; Treutelaar, Mary K; Kennedy, Robert T; Burant, Charles F | The Journal of biological chemistry | 24675078 | 2014 May 9 |
| Platelet lipidomics: modern day perspective on lipid discovery and characterization in platelets. | O'Donnell, Valerie B; Murphy, Robert C; Watson, Steve P | Circulation research | 24677238 | 2014 Mar 28 |
| An Omega-3 Epoxide of Docosahexaenoic Acid Lowers Blood Pressure in Angiotensin-II Dependent Hypertension. | Ulu, Arzu; Stephen Lee, Kin Sing; Miyabe, Christina; Yang, Jun; Hammock, Bruce G; Dong, Hua; Hammock, Bruce D | Journal of cardiovascular pharmacology | 24691274 | 2014 Mar 31 |
| Role in tumor growth of a glycogen debranching enzyme lost in glycogen storage disease. | Guin, Sunny; Pollard, Courtney; Ru, Yuanbin; Ritterson Lew, Carolyn; Duex, Jason E; Dancik, Garrett; Owens, Charles; Spencer, Andrea; Knight, Scott; Holemon, Heather; Gupta, Sounak; Hansel, Donna; Hellerstein, Marc; Lorkiewicz, Pawel; Lane, Andrew N; Fan, | Journal of the National Cancer Institute | 24700805 | 2014 May |
| LC-MS-based metabolomics: an update. | Fang, Zhong-Ze; Gonzalez, Frank J | Archives of toxicology. | 24710571 | 2014 Aug; |
| MetDisease--connecting metabolites to diseases via literature. | Duren, William; Weymouth, Terry; Hull, Tim; Omenn, Gilbert S; Athey, Brian; Burant, Charles; Karnovsky, Alla | Bioinformatics (Oxford, England) | 24713438 | 2014 Apr 23 |
| MR microscopy of formalin fixed paraffin embedded histology specimens. | Macura, Slobodan; Mishra, Prasanna K; Gamez, Jeffrey D; Pirko, Istvan | Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine | 24715442 | 2014 Jun |
| Testing the role of myeloid cell glucose flux in inflammation and atherosclerosis. | Nishizawa, Tomohiro; Kanter, Jenny E; Kramer, Farah; Barnhart, Shelley; Shen, Xia; Vivekanandan-Giri, Anuradha; Wall, Valerie Z; Kowitz, Jason; Devaraj, Sridevi; O'Brien, Kevin D; Pennathur, Subramaniam; Tang, Jingjing; Miyaoka, Robert S; Raines, Elaine W | Cell reports | 24726364 | 2014 Apr 24 |
| Targeting lactate dehydrogenase--a inhibits tumorigenesis and tumor progression in mouse models of lung cancer and impacts tumor-initiating cells. | Xie, Han; Hanai, Jun-Ichi; Ren, Jian-Guo; Kats, Lev; Burgess, Kerri; Bhargava, Parul; Signoretti, Sabina; Billiard, Julia; Duffy, Kevin J; Grant, Aaron; Wang, Xiaoen; Lorkiewicz, Pawel K; Schatzman, Sabrina; Bousamra 2nd, Michael; Lane, Andrew N; Higashi, | Cell metabolism | 24726384 | 2014 May 6 |
| Noninvasive urinary metabolomic profiling identifies diagnostic and prognostic markers in lung cancer. | Mathe, Ewy A; Patterson, Andrew D; Haznadar, Majda; Manna, Soumen K; Krausz, Kristopher W; Bowman, Elise D; Shields, Peter G; Idle, Jeffrey R; Smith, Philip B; Anami, Katsuhiro; Kazandjian, Dickran G; Hatzakis, Emmanuel; Gonzalez, Frank J; Harris, Curtis | Cancer research | 24736543 | 2014 Jun 15 |
| mTORC1-independent reduction of retinal protein synthesis in type 1 diabetes. | Fort, Patrice E; Losiewicz, Mandy K; Pennathur, Subramaniam; Jefferson, Leonard S; Kimball, Scot R; Abcouwer, Steven F; Gardner, Thomas W | Diabetes. | 24740573 | 2014 Sep; |
| A mitochondrial RNAi screen defines cellular bioenergetic determinants and identifies an adenylate kinase as a key regulator of ATP levels. | Lanning, Nathan J; Looyenga, Brendan D; Kauffman, Audra L; Niemi, Natalie M; Sudderth, Jessica; DeBerardinis, Ralph J; MacKeigan, Jeffrey P | Cell reports | 24767988 | 2014 May 8 |
| Customized Metabolomics Database for the Analysis of NMR (1)H-(1)H TOCSY and (13)C-(1)H HSQC-TOCSY Spectra of Complex Mixtures. | Bingol, Kerem; Bruschweiler-Li, Lei; Li, Da-Wei; Bruschweiler, Rafael | Analytical chemistry | 24773139 | 2014 May 20 |
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| Detecting and Removing Data Artifacts in Hadamard Transform Ion Mobility-Mass Spectrometry Measurements. | Prost, Spencer A; Crowell, Kevin L; Baker, Erin S; Ibrahim, Yehia M; Clowers, Brian H; Monroe, Matthew E; Anderson, Gordon A; Smith, Richard D; Payne, Samuel H | Journal of the American Society for Mass Spectrometry | 24796262 | 2014 May 6 |
| Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. | Kol, Amir; Foutouhi, Soraya; Walker, Naomi J; Kong, Nguyet T; Weimer, Bart C; Borjesson, Dori L | Stem cells and development. | 24803072 | 2014 Aug 15; |
| Quantitative NMR Metabolite Profiling of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus Discriminates between Biofilm and Planktonic Phenotypes. | Ammons, Mary Cloud B; Tripet, Brian P; Carlson, Ross P; Kirker, Kelly R; Gross, Michael A; Stanisich, Jessica J; Copie, Valerie | Journal of proteome research | 24809402 | 2014 Jun 6 |
| Protein intake and exercise for optimal muscle function with aging: recommendations from the ESPEN Expert Group. | Deutz, Nicolaas E P; Bauer, Jurgen M; Barazzoni, Rocco; Biolo, Gianni; Boirie, Yves; Bosy-Westphal, Anja; Cederholm, Tommy; Cruz-Jentoft, Alfonso; Krznaric, Zeljko; Nair, K Sreekumaran; Singer, Pierre; Teta, Daniel; Tipton, Kevin; Calder, Philip C | Clinical nutrition (Edinburgh, Scotland). | 24814383 | 2014 Dec; |
| After the feature presentation: technologies bridging untargeted metabolomics and biology. | Cho, Kevin; Mahieu, Nathaniel G; Johnson, Stephen L; Patti, Gary J | Current opinion in biotechnology | 24816495 | 2014 May 5 |
| Targeted metabolomics and mathematical modeling demonstrate that vitamin B-6 restriction alters one-carbon metabolism in cultured HepG2 cells. | da Silva, Vanessa R; Ralat, Maria A; Quinlivan, Eoin P; DeRatt, Barbara N; Garrett, Timothy J; Chi, Yueh-Yun; Frederik Nijhout, H; Reed, Michael C; Gregory 3rd, Jesse F | American journal of physiology. Endocrinology and metabolism | 24824655 | 2014 Jul 1 |
| Neutrophil extracellular trap-derived enzymes oxidize high-density lipoprotein: An additional proatherogenic mechanism in systemic lupus erythematosus. | Smith, Carolyne K; Vivekanandan-Giri, Anuradha; Tang, Chongren; Knight, Jason S; Mathew, Anna; Padilla, Robin L; Gillespie, Brenda W; Carmona-Rivera, Carmelo; Liu, Xiaodan; Subramanian, Venkataraman; Hasni, Sarfaraz; Thompson, Paul R; Heinecke, Jay W; Sar | Arthritis & rheumatology (Hoboken, N.J.) | 24838349 | 2014 May 16 |
| Age- and diet-associated metabolome remodeling characterizes the aging process driven by damage accumulation. | Avanesov, Andrei S; Ma, Siming; Pierce, Kerry A; Yim, Sun Hee; Lee, Byung Cheon; Clish, Clary B; Gladyshev, Vadim N | eLife | 24843015 | 2014 |
| Protection from hypertension in mice by the Mediterranean diet is mediated by nitro fatty acid inhibition of soluble epoxide hydrolase. | Charles, Rebecca L; Rudyk, Olena; Prysyazhna, Oleksandra; Kamynina, Alisa; Yang, Jun; Morisseau, Christophe; Hammock, Bruce D; Freeman, Bruce A; Eaton, Philip | Proceedings of the National Academy of Sciences of the United States of America | 24843165 | 2014 Jun 3 |
| A systems biology approach utilizing a mouse diversity panel identifies genetic differences influencing isoniazid-induced microvesicular steatosis. | Church, Rachel J; Wu, Hong; Mosedale, Merrie; Sumner, Susan J; Pathmasiri, Wimal; Kurtz, Catherine L; Pletcher, Mathew T; Eaddy, John S; Pandher, Karamjeet; Singer, Monica; Batheja, Ameesha; Watkins, Paul B; Adkins, Karissa; Harrill, Alison H | Toxicological sciences : an official journal of the Society of Toxicology | 24848797 | 2014 Aug 1 |
| Microbiota, oral microbiome, and pancreatic cancer. | Michaud, Dominique S; Izard, Jacques | Cancer journal (Sudbury, Mass.) | 24855008 | 2014 May-Jun |
| Profiling thiol metabolites and quantification of cellular glutathione using FT-ICR-MS spectrometry. | Gori, Sadakatali S; Lorkiewicz, Pawel; Ehringer, Daniel S; Belshoff, Alex C; Higashi, Richard M; Fan, Teresa W-M; Nantz, Michael H | Analytical and bioanalytical chemistry | 24858467 | 2014 Jul |
| Comparison of the effects of long-chain omega-3 fatty acid supplementation on plasma levels of free and esterified oxylipins. | Schebb, Nils Helge; Ostermann, Annika I; Yang, Jun; Hammock, Bruce D; Hahn, Andreas; Schuchardt, Jan Philipp | Prostaglandins & other lipid mediators | 24880049 | 2014 May 29 |
| A tour through the transcriptional landscape of platelets. | Schubert, Sebastian; Weyrich, Andrew S; Rowley, Jesse W | Blood | 24904119 | 2014 Jul 24 |
| Metabolomic data streaming for biology-dependent data acquisition. | Rinehart, Duane; Johnson, Caroline H; Nguyen, Thomas; Ivanisevic, Julijana; Benton, H Paul; Lloyd, Jessica; Arkin, Adam P; Deutschbauer, Adam M; Patti, Gary J; Siuzdak, Gary | Nature biotechnology | 24911492 | 2014 Jun |
| Analysis of Human Serum and Whole Blood for Mineral Content by ICP-MS and ICP-OES: Development of a Mineralomics Method. | Harrington, James M; Young, Daniel J; Essader, Amal S; Sumner, Susan J; Levine, Keith E | Biological trace element research | 24917052 | 2014 Jun 11 |
| Soluble epoxide hydrolase inhibitor attenuates inflammation and airway hyperresponsiveness in mice. | Yang, Jun; Bratt, Jennifer; Franzi, Lisa; Liu, Jun-Yan; Zhang, Guodong; Zeki, Amir A; Vogel, Christoph F A; Williams, Keisha; Dong, Hua; Lin, Yanping; Hwang, Sung Hee; Kenyon, Nicholas J; Hammock, Bruce D | American journal of respiratory cell and molecular biology. | 24922186 | 2015 Jan; |
| Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses. | Gowda, Harsha; Ivanisevic, Julijana; Johnson, Caroline H; Kurczy, Michael E; Benton, H Paul; Rinehart, Duane; Nguyen, Thomas; Ray, Jayashree; Kuehl, Jennifer; Arevalo, Bernardo; Westenskow, Peter D; Wang, Junhua; Arkin, Adam P; Deutschbauer, Adam M; Patti, Gary J; Siuzdak, Gary | Analytical chemistry. | 24934772 | 2014 Jul 15; |
| Tryptophan catabolism restricts IFN-ýý-expressing neutrophils and Clostridium difficile immunopathology. | El-Zaatari, Mohamad; Chang, Yu-Ming; Zhang, Min; Franz, Matthew; Shreiner, Andrew; McDermott, Andrew J; van der Sluijs, Koenraad F; Lutter, Rene; Grasberger, Helmut; Kamada, Nobuhiko; Young, Vincent B; Huffnagle, Gary B; Kao, John Y | Journal of immunology (Baltimore, Md. : 1950) | 24935925 | 2014 Jul 15 |
| Studies of Secondary Melanoma on C57BL/6J Mouse Liver Using 1H NMR Metabolomics. | Feng, Ju; Isern, Nancy G; Burton, Sarah D; Hu, Jian Zhi | Metabolites. | 24958263 | 2013; |
| Citrulline stimulates muscle protein synthesis in the post-absorptive state in healthy people fed a low-protein diet - A pilot study. | Jourdan, Marion; Nair, K Sreekumaran; Carter, Rickey E; Schimke, Jill; Ford, G Charles; Marc, Julie; Aussel, Christian; Cynober, Luc | Clinical nutrition (Edinburgh, Scotland). | 24972455 | 2015 Jun; |
| Enhanced detection and identification in metabolomics by use of LC-MS/MS untargeted analysis in combination with gas-phase fractionation. | Calder�n-Santiago, M�nica; Priego-Capote, Feliciano; Luque de Castro, Mar�a D | Analytical chemistry | 24992377 | 2014 Aug 5 |
| Differential incorporation of glucose into biomass during Warburg metabolism. | Chen, Ying-Jr; Huang, Xiaojing; Mahieu, Nathaniel G; Cho, Kevin; Schaefer, Jacob; Patti, Gary J | Biochemistry. | 25010499 | 2014 Jul 29; |
| Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine. | Zallot, Remi; Yazdani, Mohammad; Goyer, Aymeric; Ziemak, Michael J; Guan, Jiahn-Chou; McCarty, Donald R; de Crecy-Lagard, Valerie; Gerdes, Svetlana; Garrett, Timothy J; Benach, Jordi; Hunt, John F; Shintani, David K; Hanson, Andrew D | The Biochemical journal. | 25014715 | 2014 Oct 1; |
| Fasting increases human skeletal muscle net phenylalanine release and this is associated with decreased mTOR signaling. | Vendelbo, Mikkel Holm; Moller, Andreas Buch; Christensen, Britt; Nellemann, Birgitte; Clasen, Berthil Frederik Forrest; Nair, K Sreekumaran; Jorgensen, Jens Otto Lunde; Jessen, Niels; Moller, Niels | PloS one. | 25020061 | 2014; |
| The effect of vagal nerve blockade using electrical impulses on glucose metabolism in nondiabetic subjects. | Sathananthan, Matheni; Ikramuddin, Sayeed; Swain, James M; Shah, Meera; Piccinini, Francesca; Dalla Man, Chiara; Cobelli, Claudio; Rizza, Robert A; Camilleri, Michael; Vella, Adrian | Diabetes, metabolic syndrome and obesity : targets and therapy. | 25050073 | 2014; |
| Tracing flavonoid degradation in grapes by MS filtering with stable isotopes. | Chassy, Alexander W; Bueschl, Christoph; Lee, Hyeyoung; Lerno, Larry; Oberholster, Anita; Barile, Daniela; Schuhmacher, Rainer; Waterhouse, Andrew L | Food chemistry | 25053079 | 2015 Jan 1 |
| Thermally-Induced Substrate Release Via Intramolecular Cyclizations of Amino Esters and Amino Carbonates. | Knipp, Ralph J; Estrada, Rosendo; Sethu, Palaniappan; Nantz, Michael H | Tetrahedron | 25061237 | 2014 May 1 |
| Proteasome function is required for platelet production. | Shi, Dallas S; Smith, Matthew C P; Campbell, Robert A; Zimmerman, Patrick W; Franks, Zechariah B; Kraemer, Bjorn F; Machlus, Kellie R; Ling, Jing; Kamba, Patrick; Schwertz, Hansjorg; Rowley, Jesse W; Miles, Rodney R; Liu, Zhi-Jian; Sola-Visner, Martha; Italiano Jr, Joseph E; Christensen, Hilary; Kahr, Walter H A; Li, Dean Y; Weyrich, Andrew S | The Journal of clinical investigation. | 25061876 | 2014 Sep; |
| Effects of delayed gastric emptying on postprandial glucose kinetics, insulin sensitivity, and ?-cell function. | Hinshaw, Ling; Schiavon, Michele; Mallad, Ashwini; Man, Chiara Dalla; Basu, Rita; Bharucha, Adil E; Cobelli, Claudio; Carter, Rickey E; Basu, Ananda; Kudva, Yogish C | American journal of physiology. Endocrinology and metabolism. | 25074985 | 2014 Sep 15; |
| Perinatal exposure of mice to the pesticide DDT impairs energy expenditure and metabolism in adult female offspring. | La Merrill, Michele; Karey, Emma; Moshier, Erin; Lindtner, Claudia; La Frano, Michael R; Newman, John W; Buettner, Christoph | PloS one. | 25076055 | 2014; |
| PVP formulated fullerene (C60) increases Rho-kinase dependent vascular tissue contractility in pregnant Sprague Dawley rats. | Vidanapathirana, Achini K; Thompson, Leslie C; Mann, Erin E; Odom, Jillian T; Holland, Nathan A; Sumner, Susan J; Han, Li; Lewin, Anita H; Fennell, Timothy R; Brown, Jared M; Wingard, Christopher J | Reproductive toxicology (Elmsford, N.Y.). | 25088243 | 2014 Nov; |
| Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry. | Crowell, Kevin L; Baker, Erin S; Payne, Samuel H; Ibrahim, Yehia M; Monroe, Matthew E; Slysz, Gordon W; LaMarche, Brian L; Petyuk, Vladislav A; Piehowski, Paul D; Danielson 3rd, William F; Anderson, Gordon A; Smith, Richard D | International journal of mass spectrometry. | 25089116 | 2013 Nov 15; |
| Frataxin deficiency increases cyclooxygenase 2 and prostaglandins in cell and animal models of Friedreich's ataxia. | Hayashi, Genki; Shen, Yan; Pedersen, Theresa L; Newman, John W; Pook, Mark; Cortopassi, Gino | Human molecular genetics. | 25104852 | 2014 Dec 20; |
| Structural analysis of N- and O-glycans using ZIC-HILIC/dialysis coupled to NMR detection. | Qu, Yi; Feng, Ju; Deng, Shuang; Cao, Li; Zhang, Qibin; Zhao, Rui; Zhang, Zhaorui; Jiang, Yuxuan; Zink, Erika M; Baker, Scott E; Lipton, Mary S; Pasa-Tolic, Ljiljana; Hu, Jian Zhi; Wu, Si | Fungal genetics and biology : FG & B. | 25117693 | 2014 Nov; |
| Catecholamine-resistant hypotension and myocardial performance following patent ductus arteriosus ligation. | Noori, S; McNamara, P; Jain, A; Lavoie, P M; Wickremasinghe, A; Merritt, T A; Solomon, T; Sekar, K; Attridge, J T; Swanson, J R; Gillam-Krakauer, M; Reese, J; Poindexter, B B; Brook, M; Auchus, R J; Clyman, R I; PDA Ligation/Hypotension Trial Investigators | Journal of perinatology : official journal of the California Perinatal Association. | 25118721 | 2015 Feb; |
| Development and in silico evaluation of large-scale metabolite identification methods using functional group detection for metabolomics. | Mitchell, Joshua M; Fan, Teresa W-M; Lane, Andrew N; Moseley, Hunter N B | Frontiers in genetics. | 25120557 | 2014; |
| ¹³C NMR metabolomics: applications at natural abundance. | Clendinen, Chaevien S; Lee-McMullen, Brittany; Williams, Caroline M; Stupp, Gregory S; Vandenborne, Krista; Hahn, Daniel A; Walter, Glenn A; Edison, Arthur S | Analytical chemistry. | 25140385 | 2014 Sep 16; |
| Reemergence of hedgehog mediates epithelial-mesenchymal crosstalk in pulmonary fibrosis. | Hu, Biao; Liu, Jianhua; Wu, Zhe; Liu, Tianju; Ullenbruch, Matthew R; Ding, Lin; Henke, Craig A; Bitterman, Peter B; Phan, Sem H | American journal of respiratory cell and molecular biology. | 25140582 | 2015 Apr; |
| Cardioprotection by controlling hyperamylinemia in a "humanized" diabetic rat model. | Despa, Sanda; Sharma, Savita; Harris, Todd R; Dong, Hua; Li, Ning; Chiamvimonvat, Nipavan; Taegtmeyer, Heinrich; Margulies, Kenneth B; Hammock, Bruce D; Despa, Florin | Journal of the American Heart Association | 25146704 | 2014 Aug |
| Inflammation triggers production of dimethylsphingosine from oligodendrocytes. | Chen, Y-J; Hill, S; Huang, H; Taraboletti, A; Cho, K; Gallo, R; Manchester, M; Shriver, L P; Patti, G J | Neuroscience. | 25151189 | 2014 Oct 24; |
| Glutamate enrichment as new diagnostic opportunity in breast cancer. | Budczies, Jan; Pfitzner, Berit M; Gyorffy, Balazs; Winzer, Klaus-Jurgen; Radke, Cornelia; Dietel, Manfred; Fiehn, Oliver; Denkert, Carsten | International journal of cancer. Journal international du cancer. | 25155347 | 2015 Apr 1; |
| Microbial Determinants of Biochemical Individuality and Their Impact on Toxicology and Pharmacology. | Patterson, Andrew D; Turnbaugh, Peter J | Cell metabolism | 25156450 | 2014 Aug 20 |
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| Lipoxin generation is related to soluble epoxide hydrolase activity in severe asthma. | Ono, Emiko; Dutile, Stefanie; Kazani, Shamsah; Wechsler, Michael E; Yang, Jun; Hammock, Bruce D; Douda, David Nobuhiro; Tabet, Yacine; Khaddaj-Mallat, Rayan; Sirois, Marco; Sirois, Chantal; Rizcallah, Edmond; Rousseau, Eric; Martin, Richard; Sutherland, E Rand; Castro, Mario; Jarjour, Nizar N; Israel, Elliot; Levy, Bruce D; National Heart, Lung, and Blood Institute's Asthma Clinical Research Network | American journal of respiratory and critical care medicine. | 25162465 | 2014 Oct 15; |
| Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma. | Lee, Do Yup; Kind, Tobias; Yoon, Young-Ran; Fiehn, Oliver; Liu, Kwang-Hyeon | Analytical and bioanalytical chemistry. | 25171832 | 2014 Nov; |
| Role of white adipose lipolysis in the development of NASH induced by methionine- and choline-deficient diet. | Tanaka, Naoki; Takahashi, Shogo; Fang, Zhong-Ze; Matsubara, Tsutomu; Krausz, Kristopher W; Qu, Aijuan; Gonzalez, Frank J | Biochimica et biophysica acta. | 25178843 | 2014 Nov; |
| Crucial role of macrophage selenoproteins in experimental colitis. | Kaushal, Naveen; Kudva, Avinash K; Patterson, Andrew D; Chiaro, Christopher; Kennett, Mary J; Desai, Dhimant; Amin, Shantu; Carlson, Bradley A; Cantorna, Margherita T; Prabhu, K Sandeep | Journal of immunology (Baltimore, Md. : 1950). | 25187657 | 2014 Oct 1; |
| Effects of increased free fatty acid availability on adipose tissue fatty acid storage in men. | Mundi, Manpreet S; Koutsari, Chistina; Jensen, Michael D | The Journal of clinical endocrinology and metabolism. | 25192251 | 2014 Dec; |
| Disruption of heme-peptide covalent cross-linking in mammalian peroxidases by hypochlorous acid. | Abu-Soud, Husam M; Maitra, Dhiman; Shaeib, Faten; Khan, Sana N; Byun, Jaeman; Abdulhamid, Ibrahim; Yang, Zhe; Saed, Ghassan M; Diamond, Michael P; Andreana, Peter R; Pennathur, Subramaniam | Journal of inorganic biochemistry. | 25193127 | 2014 Nov; |
| High insulin combined with essential amino acids stimulates skeletal muscle mitochondrial protein synthesis while decreasing insulin sensitivity in healthy humans. | Robinson, Matthew M; Soop, Mattias; Sohn, Tae Seo; Morse, Dawn M; Schimke, Jill M; Klaus, Katherine A; Nair, K Sreekumaran | The Journal of clinical endocrinology and metabolism. | 25222757 | 2014 Dec; |
| Different mechanisms of acute versus long-term antihypertensive effects of soluble epoxide hydrolase inhibition: studies in Cyp1a1-Ren-2 transgenic rats. | Sporkova, Alexandra; Jichova, Sarka; Huskova, Zuzana; Kopkan, Libor; Nishiyama, Akira; Hwang, Sung H; Hammock, Bruce D; Imig, John D; Kompanowska-Jezierska, Elzbieta; Sadowski, Janusz; Kramer, Herbert J; Cervenka, Ludek | Clinical and experimental pharmacology & physiology. | 25224811 | 2014 Dec; |
| Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice. | Chen, Peng; Torralba, Manolito; Tan, Justin; Embree, Mallory; Zengler, Karsten; Stärkel, Peter; van Pijkeren, Jan-Peter; DePew, Jessica; Loomba, Rohit; Ho, Samuel B; Bajaj, Jasmohan S; Mutlu, Ece A; Keshavarzian, Ali; Tsukamoto, Hidekazu; Nelson, Karen E; Fouts, Derrick E; Schnabl, Bernd | Gastroenterology. | 25239591 | 2015 Jan; |
| MS2Analyzer: A software for small molecule substructure annotations from accurate tandem mass spectra. | Ma, Yan; Kind, Tobias; Yang, Dawei; Leon, Carlos; Fiehn, Oliver | Analytical chemistry. | 25263576 | 2014 Nov 4; |
| The hereditary spastic paraplegia-related enzyme DDHD2 is a principal brain triglyceride lipase. | Inloes, Jordon M; Hsu, Ku-Lung; Dix, Melissa M; Viader, Andreu; Masuda, Kim; Takei, Thais; Wood, Malcolm R; Cravatt, Benjamin F | Proceedings of the National Academy of Sciences of the United States of America. | 25267624 | 2014 Oct 14; |
| Stable isotope-labeled tracers for metabolic pathway elucidation by GC-MS and FT-MS. | Higashi, Richard M; Fan, Teresa W-M; Lorkiewicz, Pawel K; Moseley, Hunter N B; Lane, Andrew N | Methods in molecular biology (Clifton, N.J.). | 25270929 | 2014; |
| Metabolomics insights into pathophysiological mechanisms of interstitial cystitis. | Fiehn, Oliver; Kim, Jayoung | International neurourology journal. | 25279237 | 2014 Sep; |
| Deletion of ELOVL6 blocks the synthesis of oleic acid but does not prevent the development of fatty liver or insulin resistance. | Moon, Young-Ah; Ochoa, Courtney R; Mitsche, Matthew A; Hammer, Robert E; Horton, Jay D | Journal of lipid research. | 25281760 | 2014 Dec; |
| Urinary metabolomics (GC-MS) reveals that low and high birth weight infants share elevated inositol concentrations at birth. | Barberini, Luigi; Noto, Antonio; Fattuoni, Claudia; Grapov, Dmitry; Casanova, Andrea; Fenu, Gianni; Gaviano, Mauro; Carboni, Roberta; Ottonello, Giovanni; Crisafulli, Maurizio; Fanos, Vassilios; Dessi, Angelica | The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. | 25284173 | 2014 Oct; |
| The urinary metabolomics profile of an Italian autistic children population and their unaffected siblings. | Noto, Antonio; Fanos, Vassilios; Barberini, Luigi; Grapov, Dmitry; Fattuoni, Claudia; Zaffanello, Marco; Casanova, Andrea; Fenu, Gianni; De Giacomo, Andrea; De Angelis, Maria; Moretti, Corrado; Papoff, Paola; Ditonno, Raffaella; Francavilla, Ruggiero | The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. | 25284177 | 2014 Oct; |
| Bifidobacterium longum subspecies infantis: champion colonizer of the infant gut. | Underwood, Mark A; German, J Bruce; Lebrilla, Carlito B; Mills, David A | Pediatric research. | 25303277 | 2015 Jan; |
| 11*-hydroxysteroid dehydrogenase types 1 and 2 activity in subcutaneous adipose tissue in humans: implications in obesity and diabetes. | Dube, Simmi; Norby, Barbara J; Pattan, Vishwanath; Carter, Rickey E; Basu, Ananda; Basu, Rita | The Journal of clinical endocrinology and metabolism. | 25303491 | 2015 Jan; |
| Time lag of glucose from intravascular to interstitial compartment in type 1 diabetes. | Basu, Ananda; Dube, Simmi; Veettil, Sona; Slama, Michael; Kudva, Yogish C; Peyser, Thomas; Carter, Rickey E; Cobelli, Claudio; Basu, Rita | Journal of diabetes science and technology. | 25305282 | 2015 Jan; |
| Cold adaptation shapes the robustness of metabolic networks in Drosophila melanogaster. | Williams, Caroline M; Watanabe, Miki; Guarracino, Mario R; Ferraro, Maria B; Edison, Arthur S; Morgan, Theodore J; Boroujerdi, Arezue F B; Hahn, Daniel A | Evolution; international journal of organic evolution. | 25308124 | 2014 Dec; |
| Development of an analytical method for assessment of silver nanoparticle content in biological matrices by inductively coupled plasma mass spectrometry. | Poitras, Eric P; Levine, Michael A; Harrington, James M; Essader, Amal S; Fennell, Timothy R; Snyder, Rodney W; Black, Sherry L; Sumner, Susan S; Levine, Keith E | Biological trace element research. | 25308764 | 2015 Feb; |
| Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry. | Cajka, Tomas; Fiehn, Oliver | Trends in analytical chemistry : TRAC. | 25309011 | 2014 Oct 1; |
| Decreased bacterial diversity characterizes the altered gut microbiota in patients with psoriatic arthritis, resembling dysbiosis in inflammatory bowel disease. | Scher, Jose U; Ubeda, Carles; Artacho, Alejandro; Attur, Mukundan; Isaac, Sandrine; Reddy, Soumya M; Marmon, Shoshana; Neimann, Andrea; Brusca, Samuel; Patel, Tejas; Manasson, Julia; Pamer, Eric G; Littman, Dan R; Abramson, Steven B | Arthritis & rheumatology (Hoboken, N.J.) | 25319745 | 2015 Jan |
| Unified and isomer-specific NMR metabolomics database for the accurate analysis of (13)C-(1)H HSQC spectra. | Bingol, Kerem; Li, Da-Wei; Bruschweiler-Li, Lei; Cabrera, Oscar A; Megraw, Timothy; Zhang, Fengli; Bruschweiler, Rafael | ACS chemical biology. | 25333826 | 2015 Feb 20; |
| The human colostrum whey proteome is altered in gestational diabetes mellitus. | Grapov, Dmitry; Lemay, Danielle G; Weber, Darren; Phinney, Brett S; Azulay Chertok, Ilana R; Gho, Deborah S; German, J Bruce; Smilowitz, Jennifer T | Journal of proteome research. | 25338220 | 2015 Jan 2; |
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| Impact of gestational bisphenol A on oxidative stress and free fatty acids: Human association and interspecies animal testing studies. | Veiga-Lopez, Almudena; Pennathur, Subramaniam; Kannan, Kurunthachalam; Patisaul, Heather B; Dolinoy, Dana C; Zeng, Lixia; Padmanabhan, Vasantha | Endocrinology. | 25603046 | 2015 Mar; |
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| Defects in Mitochondrial Efficiency and H2O2 Emissions in Obese Women Are Restored to a Lean Phenotype With Aerobic Exercise Training. | Konopka, Adam R; Asante, Albert; Lanza, Ian R; Robinson, Matthew M; Johnson, Matthew L; Dalla Man, Chiara; Cobelli, Claudio; Amols, Mark H; Irving, Brian A; Nair, K S | Diabetes. | 25605809 | 2015 Jun; |
| Pyruvate carboxylase is critical for non-small-cell lung cancer proliferation. | Sellers, Katherine; Fox, Matthew P; Bousamra 2nd, Michael; Slone, Stephen P; Higashi, Richard M; Miller, Donald M; Wang, Yali; Yan, Jun; Yuneva, Mariia O; Deshpande, Rahul; Lane, Andrew N; Fan, Teresa W-M | The Journal of clinical investigation. | 25607840 | 2015 Feb; |
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| Isofunctional enzymes PAD1 and UbiX catalyze formation of a novel cofactor required by ferulic acid decarboxylase and 4-hydroxy-3-polyprenylbenzoic acid decarboxylase. | Lin, Fengming; Ferguson, Kyle L; Boyer, David R; Lin, Xiaoxia Nina; Marsh, E Neil G | ACS chemical biology. | 25647642 | 2015 Apr 17; |
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| Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma. | Wikoff, William R; Grapov, Dmitry; Fahrmann, Johannes F; DeFelice, Brian; Rom, William N; Pass, Harvey I; Kim, Kyoungmi; Nguyen, UyenThao; Taylor, Sandra L; Gandara, David R; Kelly, Karen; Fiehn, Oliver; Miyamoto, Suzanne | Cancer prevention research (Philadelphia, Pa.). | 25657018 | 2015 May; |
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| Distribution and biomarkers of carbon-14-labeled fullerene C60 ([(14) C(U)]C60 ) in female rats and mice for up to 30 days after intravenous exposure. | Sumner, Susan C J; Snyder, Rodney W; Wingard, Christopher; Mortensen, Ninell P; Holland, Nathan A; Shannahan, Jonathan H; Dhungana, Suraj; Pathmasiri, Wimal; Han, Li; Lewin, Anita H; Fennell, Timothy R | Journal of applied toxicology : JAT. | 25727383 | 2015 Dec; |
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| Role of fibroblast growth factor 21 in the early stage of NASH induced by methionine- and choline-deficient diet. | Tanaka, Naoki; Takahashi, Shogo; Zhang, Yuan; Krausz, Kristopher W; Smith, Philip B; Patterson, Andrew D; Gonzalez, Frank J | Biochimica et biophysica acta. | 25736301 | 2015 Jul; |
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| Inhibition of soluble epoxide hydrolase attenuates hepatic fibrosis and endoplasmic reticulum stress induced by carbon tetrachloride in mice. | Harris, Todd R; Bettaieb, Ahmed; Kodani, Sean; Dong, Hua; Myers, Richard; Chiamvimonvat, Nipavan; Haj, Fawaz G; Hammock, Bruce D | Toxicology and applied pharmacology. | 25827057 | 2015 Jul 15; |
| Evidence for a link between gut microbiota and hypertension in the Dahl rat. | Mell, Blair; Jala, Venkatakrishna R; Mathew, Anna V; Byun, Jaeman; Waghulde, Harshal; Zhang, Youjie; Haribabu, Bodduluri; Vijay-Kumar, Matam; Pennathur, Subramaniam; Joe, Bina | Physiological genomics. | 25829393 | 2015 Jun; |
| Application of high-resolution mass spectrometry to measure low abundance isotope enrichment in individual muscle proteins. | Hines, Kelly M; Ford, G Charles; Klaus, Katherine A; Irving, Brian A; Ford, Beverly L; Johnson, Kenneth L; Lanza, Ian R; Nair, K Sreekumaran | Analytical and bioanalytical chemistry. | 25832482 | 2015 May; |
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| Melatonin prevents myeloperoxidase heme destruction and the generation of free iron mediated by self-generated hypochlorous acid. | Shaeib, Faten; Khan, Sana N; Ali, Iyad; Najafi, Tohid; Maitra, Dhiman; Abdulhamid, Ibrahim; Saed, Ghassan M; Pennathur, Subramaniam; Abu-Soud, Husam M | PloS one. | 25835505 | 2015 Apr 2; |
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| Profiles of 21-Carbon Steroids in 21-hydroxylase Deficiency. | Turcu, Adina F; Rege, Juilee; Chomic, Robert; Liu, Jiayan; Nishimoto, Hiromi K; Else, Tobias; Moraitis, Andreas G; Palapattu, Ganesh S; Rainey, William E; Auchus, Richard J | The Journal of clinical endocrinology and metabolism. | 25850025 | 2015 Jun; |
| Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia. | Fahrmann, Johannes; Grapov, Dmitry; Yang, Jun; Hammock, Bruce; Fiehn, Oliver; Bell, Graeme I; Hara, Manami | American journal of physiology. Endocrinology and metabolism. | 25852003 | 2015 Jun 1; |
| Effects of Dietary n-3 Fatty Acids on Hepatic and Peripheral Insulin Sensitivity in Insulin-Resistant Humans. | Lalia, Antigoni Z; Johnson, Matthew L; Jensen, Michael D; Hames, Kazanna C; Port, John D; Lanza, Ian R | Diabetes care. | 25852206 | 2015 Jul; |
| Obesity Increases Mortality and Modulates the Lung Metabolome during Pandemic H1N1 Influenza Virus Infection in Mice. | Milner, J Justin; Rebeles, Jenny; Dhungana, Suraj; Stewart, Delisha A; Sumner, Susan C J; Meyers, Matthew H; Mancuso, Peter; Beck, Melinda A | Journal of immunology (Baltimore, Md. : 1950). | 25862817 | 2015 May 15; |
| NMR/MS Translator for the Enhanced Simultaneous Analysis of Metabolomics Mixtures by NMR Spectroscopy and Mass Spectrometry: Application to Human Urine. | Bingol, Kerem; Brüschweiler, Rafael | Journal of proteome research. | 25881480 | 2015 Jun 5; |
| Adipose Tissue Free Fatty Acid Storage In Vivo: Effects of Insulin Versus Niacin as a Control for Suppression of Lipolysis. | Ali, Asem H; Mundi, Manpreet; Koutsari, Christina; Bernlohr, David A; Jensen, Michael D | Diabetes. | 25883112 | 2015 Aug; |
| Ion Mobility and Tandem Mass Spectrometry of Phosphatidylglycerol and Bis(monoacylglycerol)phosphate (BMP). | Hankin, Joseph A; Murphy, Robert C; Barkley, Robert M; Gijón, Miguel A | International journal of mass spectrometry. | 25883529 | 2015 Feb 15; |
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| Metabolomic Analysis of Oxidative and Glycolytic Skeletal Muscles by Matrix-Assisted Laser Desorption/IonizationMass Spectrometric Imaging (MALDI MSI). | Tsai, Yu-Hsuan; Garrett, Timothy J; Carter, Christy S; Yost, Richard A | Journal of the American Society for Mass Spectrometry. | 25893271 | 2015 Jun; |
| Exercise effects on postprandial glucose metabolism in type 1 diabetes: a triple-tracer approach. | Mallad, Ashwini; Hinshaw, Ling; Schiavon, Michele; Dalla Man, Chiara; Dadlani, Vikash; Basu, Rita; Lingineni, Ravi; Cobelli, Claudio; Johnson, Matthew L; Carter, Rickey; Kudva, Yogish C; Basu, Ananda | American journal of physiology. Endocrinology and metabolism. | 25898950 | 2015 Jun 15; |
| Cardiac resynchronization therapy induces adaptive metabolic transitions in the metabolomic profile of heart failure. | Nemutlu, Emirhan; Zhang, Song; Xu, Yi-Zhou; Terzic, Andre; Zhong, Li; Dzeja, Petras D; Cha, Yong-Mei | Journal of cardiac failure. | 25911126 | 2015 Jun; |
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| The macrophage phagocytic receptor CD36 promotes fibrogenic pathways on removal of apoptotic cells during chronic kidney injury. | Pennathur, Subramaniam; Pasichnyk, Katie; Bahrami, Nadia M; Zeng, Lixia; Febbraio, Maria; Yamaguchi, Ikuyo; Okamura, Daryl M | The American journal of pathology | 26092500 | 2015 Aug |
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| Metabolomics Analysis Reveals that AICAR Affects Glycerolipid, Ceramide and Nucleotide Synthesis Pathways in INS-1 Cells. | ElAzzouny, Mahmoud A; Evans, Charles R; Burant, Charles F; Kennedy, Robert T | PloS one | 26107620 | 2015 |
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| Metabolomics and Natural-Products Strategies to Study Chemical Ecology in Nematodes. | Edison, Arthur S; Clendinen, Chaevien S; Ajredini, Ramadan; Beecher, Chris; Ponce, Francesca V; Stupp, Gregory S | Integrative and comparative biology. | 26141866 | 2015 Sep; |
| Gene expression changes in subcutaneous adipose tissue due to Cushing's disease. | Hochberg, Irit; Harvey, Innocence; Tran, Quynh T; Stephenson, Erin J; Barkan, Ariel L; Saltiel, Alan R; Chandler, William F; Bridges, Dave | Journal of molecular endocrinology. | 26150553 | 2015 Oct; |
| Platelet-Synthesized Testosterone in Men with Prostate Cancer Induces Androgen Receptor Signaling. | Zaslavsky, Alexander B; Gloeckner-Kalousek, Audrey; Adams, Mackenzie; Putluri, Nagireddy; Venghatakrishnan, Harene; Li, Hangwen; Morgan, Todd M; Feng, Felix Y; Tewari, Muneesh; Sreekumar, Arun; Palapattu, Ganesh S | Neoplasia (New York, N.Y.). | 26152357 | 2015 Jun; |
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| Carnitine Acetyltransferase Mitigates Metabolic Inertia and Muscle Fatigue during Exercise. | Seiler, Sarah E; Koves, Timothy R; Gooding, Jessica R; Wong, Kari E; Stevens, Robert D; Ilkayeva, Olga R; Wittmann, April H; DeBalsi, Karen L; Davies, Michael N; Lindeboom, Lucas; Schrauwen, Patrick; Schrauwen-Hinderling, Vera B; Muoio, Deborah M | Cell metabolism | 26154055 | 2015 Jul 7 |
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| Validation of a Metallomics Analysis of Placenta Tissue by Inductively-Coupled Plasma Mass Spectrometry. | Harrington, James M; Young, Daniel J; Fry, Rebecca C; Weber, Frank X; Sumner, Susan S; Levine, Keith E | Biological trace element research | 26155965 | 2016 Feb |
| Metabolomics and transcriptomics identify pathway differences between visceral and subcutaneous adipose tissue in colorectal cancer patients: the ColoCare study. | Liesenfeld, David B; Grapov, Dmitry; Fahrmann, Johannes F; Salou, Mariam; Scherer, Dominique; Toth, Reka; Habermann, Nina; Böhm, Jürgen; Schrotz-King, Petra; Gigic, Biljana; Schneider, Martin; Ulrich, Alexis; Herpel, Esther; Schirmacher, Peter; Fiehn, Oliver; Lampe, Johanna W; Ulrich, Cornelia M | The American journal of clinical nutrition. | 26156741 | 2015 Aug; |
| Fecal Microbiota Transplantation Eliminates Clostridium difficile in a Murine Model of Relapsing Disease. | Seekatz, Anna M; Theriot, Casey M; Molloy, Caitlyn T; Wozniak, Katherine L; Bergin, Ingrid L; Young, Vincent B | Infection and immunity | 26169276 | 2015 Oct |
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| Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer. | Ibrahim, Yehia M; Baker, Erin S; Danielson 3rd, William F; Norheim, Randolph V; Prior, David C; Anderson, Gordon A; Belov, Mikhail E; Smith, Richard D | International journal of mass spectrometry. | 26185483 | 2015 Feb 1; |
| Temporal metabolomic responses of cultured HepG2 liver cells to high fructose and high glucose exposures. | Meissen, John K; Hirahatake, Kristin M; Adams, Sean H; Fiehn, Oliver | Metabolomics : Official journal of the Metabolomic Society. | 26190955 | 2015 Jun 1; |
| Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization. | Mariotti, Marco; Santesmasses, Didac; Capella-Gutierrez, Salvador; Mateo, Andrea; Arnan, Carme; Johnson, Rory; D'Aniello, Salvatore; Yim, Sun Hee; Gladyshev, Vadim N; Serras, Florenci; Corominas, Montserrat; Gabaldón, Toni; Guigó, Roderic | Genome research | 26194102 | 2015 Sep |
| Adjustment of Open-Loop Settings to Improve Closed-Loop Results in Type 1 Diabetes: A Multicenter Randomized Trial. | Dassau, Eyal; Brown, Sue A; Basu, Ananda; Pinsker, Jordan E; Kudva, Yogish C; Gondhalekar, Ravi; Patek, Steve; Lv, Dayu; Schiavon, Michele; Lee, Joon Bok; Dalla Man, Chiara; Hinshaw, Ling; Castorino, Kristin; Mallad, Ashwini; Dadlani, Vikash; McCrady-Spitzer, Shelly K; McElwee-Malloy, Molly; Wakeman, Christian A; Bevier, Wendy C; Bradley, Paige K; Kovatchev, Boris; Cobelli, Claudio; Zisser, Howard C; Doyle 3rd, Francis J | The Journal of clinical endocrinology and metabolism. | 26204135 | 2015 Oct; |
| Metabolic Interplay between Astrocytes and Neurons Regulates Endocannabinoid Action. | Viader, Andreu; Blankman, Jacqueline L; Zhong, Peng; Liu, Xiaojie; Schlosburg, Joel E; Joslyn, Christopher M; Liu, Qing-Song; Tomarchio, Aaron J; Lichtman, Aron H; Selley, Dana E; Sim-Selley, Laura J; Cravatt, Benjamin F | Cell reports. | 26212325 | 2015 Aug 4; |
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| Left-Biased Spermatogenic Failure in 129/SvJ Dnd1Ter/+ Mice Correlates with Differences in Vascular Architecture, Oxygen Availability, and Metabolites. | Bustamante-Marin, Ximena M; Cook, Matthew S; Gooding, Jessica; Newgard, Christopher; Capel, Blanche | Biology of reproduction. | 26224005 | 2015 Sep; |
| The c-MET Network as Novel Prognostic Marker for Predicting Bladder Cancer Patients with an Increased Risk of Developing Aggressive Disease. | Kim, Young-Won; Yun, Seok Joong; Jeong, Phildu; Kim, Seon-Kyu; Kim, Seon-Young; Yan, Chunri; Seo, Sung Phil; Lee, Sang Keun; Kim, Jayoung; Kim, Wun-Jae | PloS one. | 26225770 | 2015 Jul 30; |
| Plasma linoleic acid partially mediates the association of bipolar disorder on self-reported mental health scales. | Evans, Simon J; Assari, Shervin; Harrington, Gloria J; Chang, Ya-Wen; Burant, Charles F; McInnis, Melvin G | Journal of psychiatric research. | 26228402 | 2015 Sep; |
| A new method to measure muscle protein synthesis in humans by endogenously introduced d9-leucine and using blood for precursor enrichment determination. | Tran, Lee; Masters, Haley; Roust, Lori R; Katsanos, Christos S | Physiological reports | 26243214 | 2015 Aug |
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| Profiling the metabolome changes caused by cranberry procyanidins in plasma of female rats using (1) H NMR and UHPLC-Q-Orbitrap-HRMS global metabolomics approaches. | Liu, Haiyan; Garrett, Timothy J; Tayyari, Fariba; Gu, Liwei | Molecular nutrition & food research. | 26264887 | 2015 Nov; |
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| Modeling Plasma-to-Interstitium Glucose Kinetics from Multitracer Plasma and Microdialysis Data. | Schiavon, Michele; Dalla Man, Chiara; Dube, Simmi; Slama, Michael; Kudva, Yogish C; Peyser, Thomas; Basu, Ananda; Basu, Rita; Cobelli, Claudio | Diabetes technology & therapeutics. | 26313215 | 2015 Nov; |
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| Use of the second-generation antipsychotic, risperidone, and secondary weight gain are associated with an altered gut microbiota in children. | Bahr, S M; Tyler, B C; Wooldridge, N; Butcher, B D; Burns, T L; Teesch, L M; Oltman, C L; Azcarate-Peril, M A; Kirby, J R; Calarge, C A | Translational psychiatry | 26440540 | 2015 Oct 06 |
| The balance of powers: Redox regulation of fibrogenic pathways in kidney injury. | Okamura, Daryl M; Pennathur, Subramaniam | Redox biology. | 26448394 | 2015 Dec; |
| Dectin-1 Activation by a Natural Product ?-Glucan Converts Immunosuppressive Macrophages into an M1-like Phenotype. | Liu, Min; Luo, Fengling; Ding, Chuanlin; Albeituni, Sabrin; Hu, Xiaoling; Ma, Yunfeng; Cai, Yihua; McNally, Lacey; Sanders, Mary Ann; Jain, Dharamvir; Kloecker, Goetz; Bousamra 2nd, Michael; Zhang, Huang-ge; Higashi, Richard M; Lane, Andrew N; Fan, Teresa W-M; Yan, Jun | Journal of immunology (Baltimore, Md. : 1950) | 26453753 | 2015 Nov 15 |
| Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. | Sud M1, Fahy E1, Cotter D1, Azam K1, Vadivelu I1, Burant C2, Edison A3, Fiehn O4, Higashi R5, Nair KS6, Sumner S7, Subramaniam S8. | Nucleic Acids Research | 26467476 | 2015 Oct 13 |
| Interactions Between the Gastrointestinal Microbiome and Clostridium difficile. | Theriot, Casey M; Young, Vincent B | Annual review of microbiology. | 26488281 | 2015; |
| Altered Metabolic Profile With Sodium-Restricted Dietary Approaches to Stop Hypertension Diet in Hypertensive Heart Failure With Preserved Ejection Fraction. | Mathew, Anna V; Seymour, E Mitchell; Byun, Jaeman; Pennathur, Subramaniam; Hummel, Scott L | Journal of cardiac failure | 26497755 | 2015 Dec |
| Microbiota-Dependent Hepatic Lipogenesis Mediated by Stearoyl CoA Desaturase 1 (SCD1) Promotes Metabolic Syndrome in TLR5-Deficient Mice. | Singh, Vishal; Chassaing, Benoit; Zhang, Limin; San Yeoh, Beng; Xiao, Xia; Kumar, Manish; Baker, Mark T; Cai, Jingwei; Walker, Rachel; Borkowski, Kamil; Harvatine, Kevin J; Singh, Nagendra; Shearer, Gregory C; Ntambi, James M; Joe, Bina; Patterson, Andrew D; Gewirtz, Andrew T; Vijay-Kumar, Matam | Cell metabolism | 26525535 | 2015 Dec 1 |
| Organization of the Mammalian Ionome According to Organ Origin, Lineage Specialization, and Longevity. | Ma, Siming; Lee, Sang-Goo; Kim, Eun Bae; Park, Thomas J; Seluanov, Andrei; Gorbunova, Vera; Buffenstein, Rochelle; Seravalli, Javier; Gladyshev, Vadim N | Cell reports. | 26549444 | 2015 Nov 17; |
| Altered fecal short chain fatty acid composition in children with a history of Hirschsprung-associated enterocolitis. | Demehri, Farokh R; Frykman, Philip K; Cheng, Zhi; Ruan, Chunhai; Wester, Tomas; Nordenskj�ld, Agneta; Kawaguchi, Akemi; Hui, Thomas T; Granstr�m, Anna L; Funari, Vince; Teitelbaum, Daniel H; HAEC Collaborative Research Group | Journal of pediatric surgery | 26561246 | 2016 Jan |
| The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition. | Sperber, Henrik; Mathieu, Julie; Wang, Yuliang; Ferreccio, Amy; Hesson, Jennifer; Xu, Zhuojin; Fischer, Karin A; Devi, Arikketh; Detraux, Damien; Gu, Haiwei; Battle, Stephanie L; Showalter, Megan; Valensisi, Cristina; Bielas, Jason H; Ericson, Nolan G; Margaretha, Lilyana; Robitaille, Aaron M; Margineantu, Daciana; Fiehn, Oliver; Hockenbery, David; Blau, C Anthony; Raftery, Daniel; Margolin, Adam A; Hawkins, R David; Moon, Randall T; Ware, Carol B; Ruohola-Baker, Hannele | Nature cell biology | 26571212 | 2015 Dec |
| Oxidative Modifications of Protein Tyrosyl Residues Are Increased in Plasma of Human Subjects with Interstitial Lung Disease. | Pennathur, Subramaniam; Vivekanandan-Giri, Anuradha; Locy, Morgan L; Kulkarni, Tejaswini; Zhi, Degui; Zeng, Lixia; Byun, Jaeman; de Andrade, Joao A; Thannickal, Victor J | American journal of respiratory and critical care medicine. | 26575972 | 2016 Apr 15; |
| An in silico MS/MS library for automatic annotation of novel FAHFA lipids. | Ma, Yan; Kind, Tobias; Vaniya, Arpana; Gennity, Ingrid; Fahrmann, Johannes F; Fiehn, Oliver | Journal of cheminformatics | 26579213 | 2015 |
| Ion Mobility in Clinical Analysis: Current Progress and Future Perspectives. | Chouinard, Christopher D; Wei, Michael S; Beekman, Christopher R; Kemperman, Robin H J; Yost, Richard A | Clinical chemistry | 26585928 | 2016 Jan |
| A Diet-Sensitive BAF60a-Mediated Pathway Links Hepatic Bile Acid Metabolism to Cholesterol Absorption and Atherosclerosis. | Meng, Zhuo-Xian; Wang, Lin; Chang, Lin; Sun, Jingxia; Bao, Jiangyin; Li, Yaqiang; Chen, Y Eugene; Lin, Jiandie D | Cell reports | 26586440 | 2015 Nov 24 |
| Dose-Dependent Response of Personal Glucose Meters to Nicotinamide Coenzymes: Applications to Point-of-Care Diagnostics of Many Non-Glucose Targets in a Single Step. | Zhang, Jingjing; Xiang, Yu; Wang, Miao; Basu, Ananda; Lu, Yi | Angewandte Chemie (International ed. in English). | 26593219 | 2016 Jan 11; |
| Quantitative H2S-mediated protein sulfhydration reveals metabolic reprogramming during the integrated stress response. | Gao, Xing-Huang; Krokowski, Dawid; Guan, Bo-Jhih; Bederman, Ilya; Majumder, Mithu; Parisien, Marc; Diatchenko, Luda; Kabil, Omer; Willard, Belinda; Banerjee, Ruma; Wang, Benlian; Bebek, Gurkan; Evans, Charles R; Fox, Paul L; Gerson, Stanton L; Hoppel, Charles L; Liu, Ming; Arvan, Peter; Hatzoglou, Maria | eLife | 26595448 | 2015 Nov 23 |
| Nanoparticle-Assisted Removal of Protein in Human Serum for Metabolomics Studies. | Zhang, Bo; Xie, Mouzhe; Bruschweiler-Li, Lei; Br�schweiler, Rafael | Analytical chemistry | 26605638 | 2016 Jan 5 |
| Metabolite Signatures in Hydrophilic Extracts of Mouse Lungs Exposed to Cigarette Smoke Revealed by (1)H NMR Metabolomics Investigation. | Jz, Hu; X, Wang; J, Feng; Bj, Robertson; Km, Waters; Sc, Tilton; Jg, Pounds; Ra, Corley; M, Liu; M, Hu | Metabolomics : open access. | 26609465 | 2015 Jun; |
| Virus encoded circulatory miRNAs for early detection of prostate cancer. | Kim, Jayoung; Yun, Seok Joong; Kim, Wun-Jae | BMC urology. | 26612689 | 2015; |
| Insulin:Carbohydrate Ratio--Part of the Story. | Basu, Ananda; Basu, Rita | Diabetes technology & therapeutics. | 26618719 | 2015 Dec; |
| Hepatocytes release ceramide-enriched pro-inflammatory extracellular vesicles in an IRE1?-dependent manner. | Kakazu, Eiji; Mauer, Amy S; Yin, Meng; Malhi, Harmeet | Journal of lipid research | 26621917 | 2016 Feb |
| Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. | Quinn, Robert A; Phelan, Vanessa V; Whiteson, Katrine L; Garg, Neha; Bailey, Barbara A; Lim, Yan Wei; Conrad, Douglas J; Dorrestein, Pieter C; Rohwer, Forest L | The ISME journal. | 26623545 | 2016 Jun; |
| Evidence that 2-hydroxyglutarate is not readily metabolized in colorectal carcinoma cells. | Gelman, Susan J; Mahieu, Nathaniel G; Cho, Kevin; Llufrio, Elizabeth M; Wencewicz, Timothy A; Patti, Gary J | Cancer & metabolism | 26629338 | 2015 |
| Chronic Zinc Deficiency Alters Chick Gut Microbiota Composition and Function. | Reed, Spenser; Neuman, Hadar; Moscovich, Sharon; Glahn, Raymond P; Koren, Omry; Tako, Elad | Nutrients | 26633470 | 2015 Nov 27 |
| Toward Merging Untargeted and Targeted Methods in Mass Spectrometry-Based Metabolomics and Lipidomics. | Cajka, Tomas; Fiehn, Oliver | Analytical chemistry | 26637011 | 2016 Jan 5 |
| PPAR-pan activation induces hepatic oxidative stress and lipidomic remodelling. | Ament, Zsuzsanna; West, James A; Stanley, Elizabeth; Ashmore, Tom; Roberts, Lee D; Wright, Jayne; Nicholls, Andrew W; Griffin, Julian L | Free radical biology & medicine | 26654758 | 2016 06 |
| Rapid and profound rewiring of brain lipid signaling networks by acute diacylglycerol lipase inhibition. | Ogasawara, Daisuke; Deng, Hui; Viader, Andreu; Baggelaar, Marc P; Breman, Arjen; den Dulk, Hans; van den Nieuwendijk, Adriann M C H; Soethoudt, Marjolein; van der Wel, Tom; Zhou, Juan; Overkleeft, Herman S; Sanchez-Alavez, Manuel; Mo, Simone; Nguyen, William; Conti, Bruno; Liu, Xiaojie; Chen, Yao; Liu, Qing-Song; Cravatt, Benjamin F; van der Stelt, Mario | Proceedings of the National Academy of Sciences of the United States of America | 26668358 | 2016 Jan 5 |
| Intestine-selective farnesoid X receptor inhibition improves obesity-related metabolic dysfunction. | Jiang, Changtao; Xie, Cen; Lv, Ying; Li, Jing; Krausz, Kristopher W; Shi, Jingmin; Brocker, Chad N; Desai, Dhimant; Amin, Shantu G; Bisson, William H; Liu, Yulan; Gavrilova, Oksana; Patterson, Andrew D; Gonzalez, Frank J | Nature communications | 26670557 | NULL |
| Changes in PTGS1 and ALOX12 Gene Expression in Peripheral Blood Mononuclear Cells Are Associated with Changes in Arachidonic Acid, Oxylipins, and Oxylipin/Fatty Acid Ratios in Response to Omega-3 Fatty Acid Supplementation. | Berthelot, Claire C; Kamita, Shizuo George; Sacchi, Romina; Yang, Jun; Nording, Malin L; Georgi, Katrin; Hegedus Karbowski, Christine; German, J Bruce; Weiss, Robert H; Hogg, Ronald J; Hammock, Bruce D; Zivkovic, Angela M | PloS one. | 26672987 | 2015; |
| A roadmap for the XCMS family of software solutions in metabolomics. | Mahieu, Nathaniel G; Genenbacher, Jessica Lloyd; Patti, Gary J | Current opinion in chemical biology. | 26673825 | 2016 Feb; |
| (13)C Tracer Studies of Metabolism in Mouse Tumor Xenografts. | Lane, Andrew N; Yan, Jun; Fan, Teresa W-M | Bio-protocol. | 26693168 | 2015 Nov 20; |
| Antioxidant Drug Tempol Promotes Functional Metabolic Changes in the Gut Microbiota. | Cai, Jingwei; Zhang, Limin; Jones, Richard A; Correll, Jared B; Hatzakis, Emmanuel; Smith, Philip B; Gonzalez, Frank J; Patterson, Andrew D | Journal of proteome research | 26696396 | 2016 Feb 5 |
| Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS. | Ma, Yan; Tanaka, Nobuo; Vaniya, Arpana; Kind, Tobias; Fiehn, Oliver | Journal of agricultural and food chemistry | 26698107 | 2016 Jan 20 |
| Predictors of Whole-Body Insulin Sensitivity Across Ages and Adiposity in Adult Humans. | Lalia, Antigoni Z; Dasari, Surendra; Johnson, Matthew L; Robinson, Matthew M; Konopka, Adam R; Distelmaier, Klaus; Port, John D; Glavin, Maria T; Esponda, Raul Ruiz; Nair, K Sreekumaran; Lanza, Ian R | The Journal of clinical endocrinology and metabolism | 26709968 | 2016 Feb |
| Transcription Factor Hepatocyte Nuclear Factor-1? Regulates Renal Cholesterol Metabolism. | Aboudehen, Karam; Kim, Min Soo; Mitsche, Matthew; Garland, Kristina; Anderson, Norma; Noureddine, Lama; Pontoglio, Marco; Patel, Vishal; Xie, Yang; DeBose-Boyd, Russell; Igarashi, Peter | Journal of the American Society of Nephrology : JASN. | 26712526 | 2016 08; |
| Altered Skeletal Muscle Mitochondrial Proteome As the Basis of Disruption of Mitochondrial Function in Diabetic Mice. | Zabielski, Piotr; Lanza, Ian R; Gopala, Srinivas; Holtz Heppelmann, Carrie J; Bergen 3rd, H Robert; Dasari, Surendra; Nair, K Sreekumaran | Diabetes | 26718503 | 2016 Mar |
| SDHB-Deficient Cancers: The Role of Mutations That Impair Iron Sulfur Cluster Delivery. | Saxena, Neetu; Maio, Nunziata; Crooks, Daniel R; Ricketts, Christopher J; Yang, Youfeng; Wei, Ming-Hui; Fan, Teresa W-M; Lane, Andrew N; Sourbier, Carole; Singh, Anamika; Killian, J Keith; Meltzer, Paul S; Vocke, Cathy D; Rouault, Tracey A; Linehan, W Marston | Journal of the National Cancer Institute. | 26719882 | 2016 Jan; |
| Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry. | Kyle, Jennifer E; Zhang, Xing; Weitz, Karl K; Monroe, Matthew E; Ibrahim, Yehia M; Moore, Ronald J; Cha, Jeeyeon; Sun, Xiaofei; Lovelace, Erica S; Wagoner, Jessica; Polyak, Stephen J; Metz, Thomas O; Dey, Sudhansu K; Smith, Richard D; Burnum-Johnson, Kristin E; Baker, Erin S | The Analyst | 26734689 | 2016 Feb 15 |
| Effect of fish oil on monoepoxides derived from fatty acids during cardiac surgery. | Akintoye, Emmanuel; Wu, Jason H Y; Hou, Tao; Song, Xiaoling; Yang, Jun; Hammock, Bruce; Mozaffarian, Dariush | Journal of lipid research. | 26749073 | 2016 Mar; |
| Dicer1 mediated miRNA processing shapes the mRNA profile and function of murine platelets. | Rowley, Jesse W; Chappaz, Stéphane; Corduan, Aurélie; Chong, Mark M W; Campbell, Robert; Khoury, Amanda; Manne, Bhanu Kanth; Wurtzel, Jeremy G T; Michael, James V; Goldfinger, Lawrence E; Mumaw, Michele M; Nieman, Marvin T; Kile, Benjamin T; Provost, Patrick; Weyrich, Andrew S | Blood. | 26773046 | 2016 Jan 14; |
| Targeted Lipidomic and Transcriptomic Analysis Identifies Dysregulated Renal Ceramide Metabolism in a Mouse Model of Diabetic Kidney Disease. | Sas, Kelli M; Nair, Viji; Byun, Jaeman; Kayampilly, Pradeep; Zhang, Hongyu; Saha, Jharna; Brosius 3rd, Frank C; Kretzler, Matthias; Pennathur, Subramaniam | Journal of proteomics & bioinformatics. | 26778897 | 2015 Oct; |
| Metabolomic Profiling of Arginine Metabolome Links Altered Methylation to Chronic Kidney Disease Accelerated Atherosclerosis. | Mathew, Anna V; Zeng, Lixia; Byun, Jaeman; Pennathur, Subramaniam | Journal of proteomics & bioinformatics. | 26778898 | 2015 Oct; |
| A chemical proteomic atlas of brain serine hydrolases identifies cell type-specific pathways regulating neuroinflammation. | Viader, Andreu; Ogasawara, Daisuke; Joslyn, Christopher M; Sanchez-Alavez, Manuel; Mori, Simone; Nguyen, William; Conti, Bruno; Cravatt, Benjamin F | eLife. | 26779719 | 2016; |
| Pharmacometabolomic Assessments of Atenolol and Hydrochlorothiazide Treatment Reveal Novel Drug Response Phenotypes. | Rotroff, D M; Shahin, M H; Gurley, S B; Zhu, H; Motsinger-Reif, A; Meisner, M; Beitelshees, A L; Fiehn, O; Johnson, J A; Elbadawi-Sidhu, M; Frye, R F; Gong, Y; Weng, L; Cooper-DeHoff, R M; Kaddurah-Daouk, R | CPT: pharmacometrics & systems pharmacology | 26783503 | 2015 Nov |
| Direct Evidence of Acetaminophen Interference with Subcutaneous Glucose Sensing in Humans: A Pilot Study. | Basu, Ananda; Veettil, Sona; Dyer, Roy; Peyser, Thomas; Basu, Rita | Diabetes technology & therapeutics | 26784129 | 2016 Feb |
| Metabolic Profiling of Right Ventricular-Pulmonary Vascular Function Reveals Circulating Biomarkers of Pulmonary Hypertension. | Lewis, Gregory D; Ngo, Debby; Hemnes, Anna R; Farrell, Laurie; Domos, Carly; Pappagianopoulos, Paul P; Dhakal, Bishnu P; Souza, Amanda; Shi, Xu; Pugh, Meredith E; Beloiartsev, Arkadi; Sinha, Sumita; Clish, Clary B; Gerszten, Robert E | Journal of the American College of Cardiology. | 26791065 | 2016 Jan 19; |
| ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts. | Cavalcante, Raymond G; Patil, Snehal; Weymouth, Terry E; Bendinskas, Kestutis G; Karnovsky, Alla; Sartor, Maureen A | Bioinformatics (Oxford, England). | 26794319 | 2016 05 15; |
| Impact of Long-Term Poor and Good Glycemic Control on Metabolomics Alterations in Type 1 Diabetic People. | Dutta, Tumpa; Kudva, Yogish C; Persson, Xuan-Mai T; Schenck, Louis A; Ford, G Charles; Singh, Ravinder J; Carter, Rickey; Nair, K Sreekumaran | The Journal of clinical endocrinology and metabolism | 26796761 | 2016 Mar |
| Lipotoxicity in steatohepatitis occurs despite an increase in tricarboxylic acid cycle activity. | Patterson, Rainey E; Kalavalapalli, Srilaxmi; Williams, Caroline M; Nautiyal, Manisha; Mathew, Justin T; Martinez, Janie; Reinhard, Mary K; McDougall, Danielle J; Rocca, James R; Yost, Richard A; Cusi, Kenneth; Garrett, Timothy J; Sunny, Nishanth E | American journal of physiology. Endocrinology and metabolism. | 26814015 | 2016 Apr 1; |
| Isotopic Ratio Outlier Analysis of the S. cerevisiae Metabolome Using Accurate Mass Gas Chromatography/Time-of-Flight Mass Spectrometry: A New Method for Discovery. | Qiu, Yunping; Moir, Robyn; Willis, Ian; Beecher, Chris; Tsai, Yu-Hsuan; Garrett, Timothy J; Yost, Richard A; Kurland, Irwin J | Analytical chemistry. | 26820234 | 2016 Mar 1; |
| Surprising impact of remote groups on the folding--unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. | Liu, Rui; Cheng, Shuang; Baker, Erin S; Smith, Richard D; Zeng, Xiao Cheng; Gong, Bing | Chemical communications (Cambridge, England). | 26830456 | 2016 Mar 7; |
| Bar Coding MS(2) Spectra for Metabolite Identification. | Spalding, Jonathan L; Cho, Kevin; Mahieu, Nathaniel G; Nikolskiy, Igor; Llufrio, Elizabeth M; Johnson, Stephen L; Patti, Gary J | Analytical chemistry | 26837423 | 2016 Mar 1 |
| Microbial metabolomics in open microscale platforms. | Barkal, Layla J; Theberge, Ashleigh B; Guo, Chun-Jun; Spraker, Joe; Rappert, Lucas; Berthier, Jean; Brakke, Kenneth A; Wang, Clay C C; Beebe, David J; Keller, Nancy P; Berthier, Erwin | Nature communications | 26842393 | 2016 Feb 04 |
| White Matter Lipids as a Ketogenic Fuel Supply in Aging Female Brain: Implications for Alzheimer's Disease. | Klosinski, Lauren P; Yao, Jia; Yin, Fei; Fonteh, Alfred N; Harrington, Michael G; Christensen, Trace A; Trushina, Eugenia; Brinton, Roberta Diaz | EBioMedicine | 26844268 | 2015 Dec |
| Non-genomic activities of retinoic acid receptor alpha control actin cytoskeletal events in human platelets. | Rondina, M T; Freitag, M; Pluthero, F G; Kahr, W H A; Rowley, J W; Kraiss, L W; Franks, Z; Zimmerman, G A; Weyrich, A S; Schwertz, H | Journal of thrombosis and haemostasis : JTH. | 26848712 | 2016 May; |
| Adrenal-derived 11-oxygenated 19-carbon steroids are the dominant androgens in classic 21-hydroxylase deficiency. | Turcu, Adina F; Nanba, Aya T; Chomic, Robert; Upadhyay, Sunil K; Giordano, Thomas J; Shields, James J; Merke, Deborah P; Rainey, William E; Auchus, Richard J | European journal of endocrinology / European Federation of Endocrine Societies. | 26865584 | 2016 May; |
| Risperidone-induced weight gain is mediated through shifts in the gut microbiome and suppression of energy expenditure. | Bahr, Sarah M; Weidemann, Benjamin J; Castro, Ana N; Walsh, John W; deLeon, Orlando; Burnett, Colin M L; Pearson, Nicole A; Murry, Daryl J; Grobe, Justin L; Kirby, John R | EBioMedicine | 26870798 | 2015 Nov |
| An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection. | Antharam, Vijay C; McEwen, Daniel C; Garrett, Timothy J; Dossey, Aaron T; Li, Eric C; Kozlov, Andrew N; Mesbah, Zhubene; Wang, Gary P | PloS one | 26871580 | 2016 |
| Unique plasma metabolomic signatures of individuals with inherited disorders of long-chain fatty acid oxidation. | McCoin, Colin S; Piccolo, Brian D; Knotts, Trina A; Matern, Dietrich; Vockley, Jerry; Gillingham, Melanie B; Adams, Sean H | Journal of inherited metabolic disease. | 26907176 | 2016 May; |
| Emerging new strategies for successful metabolite identification in metabolomics. | Bingol, Kerem; Bruschweiler-Li, Lei; Li, Dawei; Zhang, Bo; Xie, Mouzhe; Brüschweiler, Rafael | Bioanalysis. | 26915807 | 2016 Mar; |
| Effect of Pramlintide on Postprandial Glucose Fluxes in Type 1 Diabetes. | Hinshaw, Ling; Schiavon, Michele; Dadlani, Vikash; Mallad, Ashwini; Dalla Man, Chiara; Bharucha, Adil; Basu, Rita; Geske, Jennifer R; Carter, Rickey E; Cobelli, Claudio; Basu, Ananda; Kudva, Yogish C | The Journal of clinical endocrinology and metabolism. | 26930181 | 2016 May; |
| Short chain acyl-CoA dehydrogenase deficiency and short-term high-fat diet perturb mitochondrial energy metabolism and transcriptional control of lipid-handling in liver. | Ghosh, Sujoy; Kruger, Claudia; Wicks, Shawna; Simon, Jacob; Kumar, K Ganesh; Johnson, William D; Mynatt, Randall L; Noland, Robert C; Richards, Brenda K | Nutrition & metabolism | 26933443 | 2016 |
| Catalytic Activities of Tumor-Specific Human Cytochrome P450 CYP2W1 Toward Endogenous Substrates. | Zhao, Yan; Wan, Debin; Yang, Jun; Hammock, Bruce D; Ortiz de Montellano, Paul R | Drug metabolism and disposition: the biological fate of chemicals. | 26936974 | 2016 May; |
| Contemporary views on the genetics of anorexia nervosa. | Shih, Pei-an Betty; Woodside, D Blake | European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. | 26944296 | 2016 Apr; |
| Applications of NMR spectroscopy to systems biochemistry. | Fan, Teresa W-M; Lane, Andrew N | Progress in nuclear magnetic resonance spectroscopy | 26952191 | 2016 Feb |
| Impaired 17,20-Lyase Activity in Male Mice Lacking Cytochrome b5 in Leydig Cells. | Sondhi, Varun; Owen, Bryn M; Liu, Jiayan; Chomic, Robert; Kliewer, Steven A; Hughes, Beverly A; Arlt, Wiebke; Mangelsdorf, David J; Auchus, Richard J | Molecular endocrinology (Baltimore, Md.). | 26974035 | 2016 Apr; |
| Gene deficiency and pharmacological inhibition of soluble epoxide hydrolase confers resilience to repeated social defeat stress. | Ren, Qian; Ma, Min; Ishima, Tamaki; Morisseau, Christophe; Yang, Jun; Wagner, Karen M; Zhang, Ji-Chun; Yang, Chun; Yao, Wei; Dong, Chao; Han, Mei; Hammock, Bruce D; Hashimoto, Kenji | Proceedings of the National Academy of Sciences of the United States of America. | 26976569 | 2016 Mar 29; |
| Extraction, Enrichment, Solubilization, and Digestion Techniques for Membrane Proteomics. | Moore, Stephanie M; Hess, Stephanie M; Jorgenson, James W | Journal of proteome research. | 26979493 | 2016 Apr 1; |
| Exercise Prevents Diet-Induced Cellular Senescence in Adipose Tissue. | Schafer, Marissa J; White, Thomas A; Evans, Glenda; Tonne, Jason M; Verzosa, Grace C; Stout, Michael B; Mazula, Daniel L; Palmer, Allyson K; Baker, Darren J; Jensen, Michael D; Torbenson, Michael S; Miller, Jordan D; Ikeda, Yasuhiro; Tchkonia, Tamara; van | Diabetes. | 26983960 | 2016 Jun; |
| 18F-Choline PET/MRI: The Additional Value of PET for MRI-Guided Transrectal Prostate Biopsies. | Piert, Morand; Montgomery, Jeffrey; Kunju, Lakshmi Priya; Siddiqui, Javed; Rogers, Virginia; Rajendiran, Thekkelnaycke; Johnson, Timothy D; Shao, Xia; Davenport, Matthew S | Journal of nuclear medicine : official publication, Society of Nuclear Medicine. | 26985061 | 2016 Jul; |
| Anti-Ulcer Efficacy of Soluble Epoxide Hydrolase Inhibitor TPPU on Diclofenac-Induced Intestinal Ulcers. | Goswami, Sumanta Kumar; Wan, Debin; Yang, Jun; Trindade da Silva, Carlos A; Morisseau, Christophe; Kodani, Sean D; Yang, Guang-Yu; Inceoglu, Bora; Hammock, Bruce D | The Journal of pharmacology and experimental therapeutics. | 26989141 | 2016 Jun; |
| 1D-¹H-nuclear magnetic resonance metabolomics reveals age-related changes in metabolites associated with experimental venous thrombosis. | Obi, Andrea T; Stringer, Kathleen A; Diaz, Jose A; Finkel, Michael A; Farris, Diana M; Yeomans, Larisa; Wakefield, Thomas; Myers Jr, Daniel D | Journal of vascular surgery. Venous and lymphatic disorders. | 26993871 | 2016 Apr; |
| Gut microbiome-derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease. | Mathewson, Nathan D; Jenq, Robert; Mathew, Anna V; Koenigsknecht, Mark; Hanash, Alan; Toubai, Tomomi; Oravecz-Wilson, Katherine; Wu, Shin-Rong; Sun, Yaping; Rossi, Corinne; Fujiwara, Hideaki; Byun, Jaeman; Shono, Yusuke; Lindemans, Caroline; Calafiore, Marco; Schmidt, Thomas C; Honda, Kenya; Young, Vincent B; Pennathur, Subramaniam; van den Brink, Marcel; Reddy, Pavan | Nature immunology. | 26998764 | 2016 May; |
| Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases. | Chen, Zhaohui; Kim, Jayoung | BMC urology | 27000794 | NULL |
| Serum phosphatidylethanolamine levels distinguish benign from malignant solitary pulmonary nodules and represent a potential diagnostic biomarker for lung cancer. | Fahrmann, Johannes F; Grapov, Dmitry; DeFelice, Brian C; Taylor, Sandra; Kim, Kyoungmi; Kelly, Karen; Wikoff, William R; Pass, Harvey; Rom, William N; Fiehn, Oliver; Miyamoto, Suzanne | Cancer biomarkers : section A of Disease markers. | 27002763 | 2016 Mar 11; |
| Acute Female Hypogonadism Alters Adipose Tissue Fatty Acid Storage Factors and Chylomicronemia. | Santosa, Sylvia; Bonnes, Sara L; Jensen, Michael D | The Journal of clinical endocrinology and metabolism. | 27003301 | 2016 May; |
| Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform. | Cong, Yongzheng; Katipamula, Shanta; Trader, Cameron D; Orton, Daniel J; Geng, Tao; Baker, Erin S; Kelly, Ryan T | Lab on a chip | 27009517 | 2016 Apr 26 |
| Association of urinary metabolites with radiographic progression of knee osteoarthritis in overweight and obese adults: an exploratory study. | Loeser, R F; Pathmasiri, W; Sumner, S J; McRitchie, S; Beavers, D; Saxena, P; Nicklas, B J; Jordan, J; Guermazi, A; Hunter, D J; Messier, S P | Osteoarthritis and cartilage / OARS, Osteoarthritis Research Society | 27012755 | 2016 Mar 21 |
| Metabolomics Reveals New Mechanisms for Pathogenesis in Barth Syndrome and Introduces Novel Roles for Cardiolipin in Cellular Function. | Sandlers, Yana; Mercier, Kelly; Pathmasiri, Wimal; Carlson, Jim; McRitchie, Susan; Sumner, Susan; Vernon, Hilary J | PloS one | 27015085 | 2016 |
| (1)H NMR Metabolomics Study of Spleen from C57BL/6 Mice Exposed to Gamma Radiation. | Xiao, X; Hu, M; Liu, M; Hu, J Z | Metabolomics : open access | 27019763 | NULL |
| Metabolomics by Gas Chromatography-Mass Spectrometry: Combined Targeted and Untargeted Profiling. | Fiehn, Oliver | Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] | 27038389 | NULL |
| Exogenous Fatty Acids Are the Preferred Source of Membrane Lipids in Proliferating Fibroblasts. | Yao, Cong-Hui; Fowle-Grider, Ronald; Mahieu, Nathanial G; Liu, Gao-Yuan; Chen, Ying-Jr; Wang, Rencheng; Singh, Manmilan; Potter, Gregory S; Gross, Richard W; Schaefer, Jacob; Johnson, Stephen L; Patti, Gary J | Cell chemical biology. | 27049668 | 2016 Apr 21; |
| Computational Modeling of Competitive Metabolism between ?3- and ?6-Polyunsaturated Fatty Acids in Inflammatory Macrophages. | Gupta, Shakti; Kihara, Yasuyuki; Maurya, Mano R; Norris, Paul C; Dennis, Edward A; Subramaniam, Shankar | The journal of physical chemistry. B. | 27063350 | 2016 Aug 25; |
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| Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival. | Fahrmann, Johannes F; Grapov, Dmitry; Phinney, Brett S; Stroble, Carol; DeFelice, Brian C; Rom, William; Gandara, David R; Zhang, Yanhong; Fiehn, Oliver; Pass, Harvey; Miyamoto, Suzanne | Clinical proteomics. | 27799870 | 2016; |
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| The Modulating Effects of Cardiac Resynchronization Therapy on Myocardial Metabolism in Heart Failure. | Xu, Yi-Zhou; Chen, Chao-Feng; Chen, Bin; Gao, Xiao-Fei; Hua, Wei; Cha, Yong-Mei; Dzeja, Petras P | Pacing and clinical electrophysiology : PACE. | 27807872 | 2016 Dec; |
| Dual Inhibition of MEK and PI3K/Akt Rescues Cancer Cachexia through both Tumor-Extrinsic and -Intrinsic Activities. | Talbert, Erin E; Yang, Jennifer; Mace, Thomas A; Farren, Matthew R; Farris, Alton B; Young, Gregory S; Elnaggar, Omar; Che, Zheng; Timmers, Cynthia D; Rajasekera, Priyani; Maskarinec, Jennifer M; Bloomston, Mark; Bekaii-Saab, Tanios; Guttridge, Denis C; L | Molecular cancer therapeutics. | 27811010 | 2017 Feb; |
| Serum Metabolomic Profiles in Neonatal Mice following Oral Brominated Flame Retardant Exposures to Hexabromocyclododecane (HBCD) Alpha, Gamma, and Commercial Mixture. | Szabo, David T; Pathmasiri, Wimal; Sumner, Susan; Birnbaum, Linda S | Environmental health perspectives | 27814246 | 2017 Apr |
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| SPLASH, a hashed identifier for mass spectra. | Wohlgemuth, Gert; Mehta, Sajjan S; Mejia, Ramon F; Neumann, Steffen; Pedrosa, Diego; Pluskal, Tomá?; Schymanski, Emma L; Willighagen, Egon L; Wilson, Michael; Wishart, David S; Arita, Masanori; Dorrestein, Pieter C; Bandeira, Nuno; Wang, Mingxun; Schulze, Tobias; Salek, Reza M; Steinbeck, Christoph; Nainala, Venkata Chandrasekhar; Mistrik, Robert; Nishioka, Takaaki; Fiehn, Oliver | Nature biotechnology. | 27824832 | 2016 Nov 08; |
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| Differential Regulation of Macrophage Glucose Metabolism by Macrophage Colony-stimulating Factor and Granulocyte-Macrophage Colony-stimulating Factor: Implications for (18)F FDG PET Imaging of Vessel Wall Inflammation. | Tavakoli, Sina; Short, John D; Downs, Kevin; Nguyen, Huynh Nga; Lai, Yanlai; Zhang, Wei; Jerabek, Paul; Goins, Beth; Sadeghi, Mehran M; Asmis, Reto | Radiology. | 27849433 | 2017 Apr; |
| Calcium Reduces Liver Injury in Mice on a High-Fat Diet: Alterations in Microbial and Bile Acid Profiles. | Nadeem Aslam, Muhammad; Bassis, Christine M; Zhang, Li; Zaidi, Sameer; Varani, James; Bergin, Ingrid L | PloS one. | 27851786 | 2016; |
| Differences in testosterone and its precursors by sex of the offspring in meconium. | Frey, Alexander J; Park, Bo Y; Schriver, Emily R; Feldman, Daniel R; Parry, Samuel; Croen, Lisa A; Fallin, Daniele M; Hertz-Picciotto, Irva; Newschaffer, Craig J; Snyder, Nathaniel W | The Journal of steroid biochemistry and molecular biology. | 27871978 | ; |
| Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity. | Ma, Siming; Upneja, Akhil; Galecki, Andrzej; Tsai, Yi-Miau; Burant, Charles F; Raskind, Sasha; Zhang, Quanwei; Zhang, Zhengdong D; Seluanov, Andrei; Gorbunova, Vera; Clish, Clary B; Miller, Richard A; Gladyshev, Vadim N | eLife. | 27874830 | 2016 Nov 22; |
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| A Targeted Metabolomics Assay to Measure Eight Purines in the Diet of Common Bottlenose Dolphins, Tursiops truncatus. | Ardente, A J; Garrett, T J; Wells, R S; Walsh, M; Smith, C R; Colee, J; Hill, R C | Journal of chromatography & separation techniques. | 27904786 | ; |
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| Adipose Fatty Acid Binding Protein Promotes Saturated Fatty Acid-Induced Macrophage Cell Death through Enhancing Ceramide Production. | Zhang, Yuwen; Rao, Enyu; Zeng, Jun; Hao, Jiaqing; Sun, Yanwen; Liu, Shujun; Sauter, Edward R; Bernlohr, David A; Cleary, Margot P; Suttles, Jill; Li, Bing | Journal of immunology (Baltimore, Md. : 1950). | 27920274 | 2017 Jan 15; |
| Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go? | Metz, Thomas O; Baker, Erin S; Schymanski, Emma L; Renslow, Ryan S; Thomas, Dennis G; Causon, Tim J; Webb, Ian K; Hann, Stephan; Smith, Richard D; Teeguarden, Justin G | Bioanalysis. | 27921453 | 2017 Jan; |
| Glioblastoma therapy can be augmented by targeting IDH1-mediated NADPH biosynthesis. | Wahl, Daniel R; Dresser, Joseph; Wilder-Romans, Kari; Parsels, Joshua D; Zhao, Shuang G; Davis, Mary; Zhao, Lili; Kachman, Maureen; Wernisch, Stefanie; Burant, Charles F; Morgan, Meredith A; Feng, Felix Y; Speers, Corey; Lyssiotis, Costas A; Lawrence, The | Cancer research. | 27923831 | ; |
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| Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies. | Kyle, Jennifer E; Casey, Cameron P; Stratton, Kelly G; Zink, Erika M; Kim, Young-Mo; Zheng, Xueyun; Monroe, Matthew E; Weitz, Karl K; Bloodsworth, Kent J; Orton, Daniel J; Ibrahim, Yehia M; Moore, Ronald J; Lee, Christine G; Pedersen, Catherine; Orwoll, Eric; Smith, Richard D; Burnum-Johnson, Kristin E; Baker, Erin S | Rapid communications in mass spectrometry : RCM. | 27958645 | 2017 Mar 15; |
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| Integrated Metabolomics and Proteomics Highlight Altered Nicotinamide- and Polyamine Pathways in Lung Adenocarcinoma. | Fahrmann, Johannes F; Grapov, Dmitry D; Wanichthanarak, Kwanjeera; DeFelice, Brian C; Salemi, Michelle R; Rom, William N; Gandara, David R; Phinney, Brett S; Fiehn, Oliver; Pass, Harvey; Miyamoto, Suzanne | Carcinogenesis | 28049629 | 2017 Mar |
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| Effect of a Soluble Epoxide Hydrolase Inhibitor, UC1728, on LPS-Induced Uveitis in the Rabbit. | McLellan, Gillian J; Aktas, Zeynep; Hennes-Beean, Elizabeth; Kolb, Aaron W; Larsen, Inna V; Schmitz, Emily J; Clausius, Hilary R; Yang, Jun; Hwang, Sung Hee; Morisseau, Christophe; Inceoglu, Bora; Hammock, Bruce D; Brandt, Curtis R | Journal of ocular biology. | 28066796 | 2016 Jan; |
| Correction: Calcium Reduces Liver Injury in Mice on a High-Fat Diet: Alterations in Microbial and Bile Acid Profiles. | Aslam, Muhammad Nadeem; Bassis, Christine M; Zhang, Li; Zaidi, Sameer; Varani, James; Bergin, Ingrid L | PloS one. | 28068422 | 2017; |
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| Soluble Epoxide Hydrolase Inhibition and Epoxyeicosatrienoic Acid Treatment Improve Vascularization of Engineered Skin Substitutes. | Supp, Dorothy M; Hahn, Jennifer M; McFarland, Kevin L; Combs, Kelly A; Lee, Kin Sing Stephen; Inceoglu, Bora; Wan, Debin; Boyce, Steven T; Hammock, Bruce D | Plastic and reconstructive surgery. Global open. | 28293507 | 2016 Dec; |
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| Preclinical Evaluation of11C-Sarcosine as a Substrate of Proton-Coupled Amino Acid Transporters and First Human Application in Prostate Cancer. | Piert, Morand; Shao, Xia; Raffel, David; Davenport, Mathew S; Montgomery, Jeffrey; Kunju, Lakshmi Priya; Hockley, Brian G; Siddiqui, Javed; Scott, Peter J H; Chinnaiyan, Arul M; Rajendiran, Thekkelnaycke | Journal of nuclear medicine : official publication, Society of Nuclear Medicine. | 28302759 | 2017 Aug; |
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| Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging. | Burnum-Johnson, Kristin E; Baker, Erin S; Metz, Thomas O | Placenta. | 28392013 | 2017 Dec; |
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| Plasma metabolomics in adults with cystic fibrosis during a pulmonary exacerbation: A pilot randomized study of high-dose vitamin D3 administration. | Alvarez, Jessica A; Chong, Elizabeth Y; Walker, Douglas I; Chandler, Joshua D; Michalski, Ellen S; Grossmann, Ruth E; Uppal, Karan; Li, Shuzhao; Frediani, Jennifer K; Tirouvanziam, Rabindra; Tran, ViLinh T; Tangpricha, Vin; Jones, Dean P; Ziegler, Thomas | Metabolism: clinical and experimental. | 28403943 | 2017 May; |
| Kidney triglyceride accumulation in the fasted mouse is dependent upon serum free fatty acids. | Scerbo, Diego; Son, Ni-Huiping; Sirwi, Alaa; Zeng, Lixia; Sas, Kelli M; Cifarelli, Vincenza; Schoiswohl, Gabriele; Huggins, Lesley-Ann; Gumaste, Namrata; Hu, Yunying; Pennathur, Subramaniam; Abumrad, Nada A; Kershaw, Erin E; Hussain, M Mahmood; Susztak, K | Journal of lipid research. | 28404638 | 2017 Jun; |
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| Combining a nontargeted and targeted metabolomics approach to identify metabolic pathways significantly altered in polycystic ovary syndrome. | Chang, Alice Y; Lalia, Antigoni Z; Jenkins, Gregory D; Dutta, Tumpa; Carter, Rickey E; Singh, Ravinder J; Nair, K Sreekumaran | Metabolism: clinical and experimental. | 28521878 | 2017 Jun; |
| Pharmacological inhibition of soluble epoxide hydrolase or genetic deletion reduces diclofenac-induced gastric ulcers. | Goswami, Sumanta Kumar; Rand, Amelia Ann; Wan, Debin; Yang, Jun; Inceoglu, Bora; Thomas, Melany; Morisseau, Christophe; Yang, Guang-Yu; Hammock, Bruce D | Life sciences. | 28522175 | 2017 Jul 01; |
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| Lipoxygenase Activity Accelerates Programmed Spore Germination in Aspergillus fumigatus. | Fischer, Gregory J; Bacon, William; Yang, Jun; Palmer, Jonathan M; Dagenais, Taylor; Hammock, Bruce D; Keller, Nancy P | Frontiers in microbiology. | 28536571 | 2017; |
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| Metabolomics biomarkers to predict acamprosate treatment response in alcohol-dependent subjects. | Hinton, David J; Vázquez, Marely Santiago; Geske, Jennifer R; Hitschfeld, Mario J; Ho, Ada M C; Karpyak, Victor M; Biernacka, Joanna M; Choi, Doo-Sup | Scientific reports. | 28566752 | 2017 May 31; |
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| Chloroformate derivatization for tracing the fate of Amino acids in cells and tissues by multiple stable isotope resolved metabolomics (mSIRM). | Yang, Ye; Fan, Teresa W-M; Lane, Andrew N; Higashi, Richard M | Analytica chimica acta. | 28576319 | 2017 Jul 11; |
| Exploring cancer metabolism using stable isotope-resolved metabolomics (SIRM). | Bruntz, Ronald C; Lane, Andrew N; Higashi, Richard M; Fan, Teresa W-M | The Journal of biological chemistry. | 28592486 | 2017 Jul 14; |
| Draft Genome Sequences of Salmonella Lysozyme Gene Knockout Mutants. | Arabyan, Narine; Huang, Bihua C; Weimer, Bart C | Genome announcements. | 28596411 | 2017 Jun 08; |
| Distinguishing d- and l-aspartic and isoaspartic acids in amyloid ? peptides with ultrahigh resolution ion mobility spectrometry. | Zheng, Xueyun; Deng, Liulin; Baker, Erin S; Ibrahim, Yehia M; Petyuk, Vladislav A; Smith, Richard D | Chemical communications (Cambridge, England). | 28654112 | 2017 Jul 11; |
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| A Robust Lipidomics Workflow for Mammalian Cells, Plasma, and Tissue Using Liquid-Chromatography High-Resolution Tandem Mass Spectrometry. | Ulmer, Candice Z; Patterson, Rainey E; Koelmel, Jeremy P; Garrett, Timothy J; Yost, Richard A | Methods in molecular biology (Clifton, N.J.). | 28660577 | 2017; |
| LC-MS-Based Lipidomics and Automated Identification of Lipids Using the LipidBlast In-Silico MS/MS Library. | Cajka, Tomas; Fiehn, Oliver | Methods in molecular biology (Clifton, N.J.). | 28660581 | 2017; |
| Myeloperoxidase Levels and Its Product 3-Chlorotyrosine Predict Chronic Kidney Disease Severity and Associated Coronary Artery Disease. | Afshinnia, Farsad; Zeng, Lixia; Byun, Jaeman; Gadegbeku, Crystal A; Magnone, Maria Chiara; Whatling, Carl; Valastro, Barbara; Kretzler, Matthias; Pennathur, Subramaniam; Michigan Kidney Translational Core CPROBE Investigator Group | American journal of nephrology. | 28668952 | 2017; |
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| Metabolomics reveal physiological changes in mayfly larvae (Neocloeon triangulifer) at ecological upper thermal limits. | Chou, Hsuan; Pathmasiri, Wimal; Deese-Spruill, Jocelin; Sumner, Susan; Buchwalter, David B | Journal of insect physiology. | 28733240 | 2017 Aug; |
| Metabolomic characteristics of cholesterol-induced non-obese nonalcoholic fatty liver disease in mice. | Tu, Lan N; Showalter, Megan R; Cajka, Tomas; Fan, Sili; Pillai, Viju V; Fiehn, Oliver; Selvaraj, Vimal | Scientific reports. | 28733574 | 2017 Jul 21; |
| Alternatives to Nuclear Overhauser Enhancement Spectroscopy Presat and Carr-Purcell-Meiboom-Gill Presat for NMR-Based Metabolomics. | Le Guennec, Adrien; Tayyari, Fariba; Edison, Arthur S | Analytical chemistry. | 28737383 | 2017 Sep 05; |
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| Metabolomic Determinants of Metabolic Risk in Mexican Adolescents. | Perng, Wei; Hector, Emily C; Song, Peter X K; Tellez Rojo, Martha Maria; Raskind, Sasha; Kachman, Maureen; Cantoral, Alejandra; Burant, Charles F; Peterson, Karen E | Obesity (Silver Spring, Md.). | 28758362 | 2017 Sep; |
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| Clots Are Potent Triggers of Inflammatory Cell Gene Expression: Indications for Timely Fibrinolysis. | Campbell, Robert A; Vieira-de-Abreu, Adriana; Rowley, Jesse W; Franks, Zechariah G; Manne, Bhanu Kanth; Rondina, Matthew T; Kraiss, Larry W; Majersik, Jennifer J; Zimmerman, Guy A; Weyrich, Andrew S | Arteriosclerosis, thrombosis, and vascular biology. | 28775073 | 2017 10; |
| Metabolomic Evaluation of the Consequences of Plasma Cystathionine Elevation in Adults with Stable Angina Pectoris. | DeRatt, Barbara N; Ralat, Maria A; Lysne, Vegard; Tayyari, Fariba; Dhar, Indu; Edison, Arthur S; Garrett, Timothy J; Midttun, Øivind; Ueland, Per Magne; Nygård, Ottar Kjell; Gregory 3rd, Jesse F | The Journal of nutrition. | 28794210 | 2017 09; |
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| Cytochrome P450 monooxygenase lipid metabolites are significant second messengers in the resolution of choroidal neovascularization. | Hasegawa, Eiichi; Inafuku, Saori; Mulki, Lama; Okunuki, Yoko; Yanai, Ryoji; Smith, Kaylee E; Kim, Clifford B; Klokman, Garrett; Bielenberg, Diane R; Puli, Narender; Falck, John R; Husain, Deeba; Miller, Joan W; Edin, Matthew L; Zeldin, Darryl C; Lee, Kin Sing Stephen; Hammock, Bruce D; Schunck, Wolf-Hagen; Connor, Kip M | Proceedings of the National Academy of Sciences of the United States of America. | 28827330 | 2017 Sep 05; |
| Dose-related liver injury of Geniposide associated with the alteration in bile acid synthesis and transportation. | Tian, Jingzhuo; Zhu, Jingjing; Yi, Yan; Li, Chunying; Zhang, Yushi; Zhao, Yong; Pan, Chen; Xiang, Shixie; Li, Xiaolong; Li, Guiqin; Newman, John W; Feng, Xiaoyi; Liu, Jing; Han, Jiayin; Wang, Lianmei; Gao, Yue; La Frano, Michael R; Liang, Aihua | Scientific reports. | 28827769 | 2017 08 21; |
| Metabolic tracing analysis reveals substrate-specific metabolic deficits in platelet storage lesion. | Sims, Carrie; Salliant, Noelle; Worth, Andrew J; Parry, Robert; Mesaros, Clementina; Blair, Ian A; Snyder, Nathaniel W | Transfusion. | 28836286 | 2017 11; |
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| Genetic Depletion of Adipocyte Creatine Metabolism Inhibits Diet-Induced Thermogenesis and Drives Obesity. | Kazak, Lawrence; Chouchani, Edward T; Lu, Gina Z; Jedrychowski, Mark P; Bare, Curtis J; Mina, Amir I; Kumari, Manju; Zhang, Song; Vuckovic, Ivan; Laznik-Bogoslavski, Dina; Dzeja, Petras; Banks, Alexander S; Rosen, Evan D; Spiegelman, Bruce M | Cell metabolism. | 28844881 | 2017 Oct 03; |
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| Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation. | Lai, Zijuan; Kind, Tobias; Fiehn, Oliver | Analytical chemistry | 28876899 | 2017 10 03 |
| Metabolomics applied to islet nutrient sensing mechanisms. | Jensen, Mette V; Gooding, Jessica R; Ferdaoussi, Mourad; Dai, Xiao-Qing; Peterson, Brett S; MacDonald, Patrick E; Newgard, Christopher B | Diabetes, obesity & metabolism. | 28880482 | 2017 09; |
| Two Cooperative Glycosyltransferases Are Responsible for the Sugar Diversity of Saquayamycins Isolated from Streptomyces sp. KY 40-1. | Salem, Shaimaa M; Weidenbach, Stevi; Rohr, Jürgen | ACS chemical biology. | 28892347 | 2017 10 20; |
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| The NQO1 bioactivatable drug, ?-lapachone, alters the redox state of NQO1+ pancreatic cancer cells, causing perturbation in central carbon metabolism. | Silvers, Molly A; Deja, Stanislaw; Singh, Naveen; Egnatchik, Robert A; Sudderth, Jessica; Luo, Xiuquan; Beg, Muhammad S; Burgess, Shawn C; DeBerardinis, Ralph J; Boothman, David A; Merritt, Matthew E | The Journal of biological chemistry. | 28916726 | 2017 11 03; |
| Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota. | Li, Guolin; Xie, Cen; Lu, Siyu; Nichols, Robert G; Tian, Yuan; Li, Licen; Patel, Daxeshkumar; Ma, Yinyan; Brocker, Chad N; Yan, Tingting; Krausz, Kristopher W; Xiang, Rong; Gavrilova, Oksana; Patterson, Andrew D; Gonzalez, Frank J | Cell metabolism. | 28918936 | 2017 Oct 03; |
| Effect of endotoxin and alum adjuvant vaccine on peanut allergy. | Johnson-Weaver, Brandi T; McRitchie, Susan; Mercier, Kelly A; Pathmasiri, Wimal; Sumner, Susan J; Chan, Cliburn; Germolec, Dori; Kulis, Michael; Burks, A Wesley; Staats, Herman F | The Journal of allergy and clinical immunology. | 28927819 | 2017 Sep 16; |
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| Effects of stimulation technique, anatomical region, and time on human sweat lipid mediator profiles. | Agrawal, Karan; Waller, Justin D; Pedersen, Theresa L; Newman, John W | Prostaglandins & other lipid mediators. | 28942325 | 2017 Sep 21; |
| Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice. | Deol, Poonamjot; Fahrmann, Johannes; Yang, Jun; Evans, Jane R; Rizo, Antonia; Grapov, Dmitry; Salemi, Michelle; Wanichthanarak, Kwanjeera; Fiehn, Oliver; Phinney, Brett; Hammock, Bruce D; Sladek, Frances M | Scientific reports. | 28970503 | 2017 Oct 02; |
| Retinoic acid receptor-? regulates synthetic events in human platelets. | Schwertz, H; Rowley, J W; Zimmerman, G A; Weyrich, A S; Rondina, M T | Journal of thrombosis and haemostasis : JTH. | 28981191 | 2017 12; |
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| (13)C/(31)P MRS Metabolic Biomarkers of Disease Progression and Response to AAV Delivery of hGAA in a Mouse Model of Pompe Disease. | Baligand, Celine; Todd, Adrian G; Lee-McMullen, Brittany; Vohra, Ravneet S; Byrne, Barry J; Falk, Darin J; Walter, Glenn A | Molecular therapy. Methods & clinical development. | 29018835 | 2017 Dec 15; |
| Impaired ?-Oxidation and Altered Complex Lipid Fatty Acid Partitioning with Advancing CKD. | Afshinnia, Farsad; Rajendiran, Thekkelnaycke M; Soni, Tanu; Byun, Jaeman; Wernisch, Stefanie; Sas, Kelli M; Hawkins, Jennifer; Bellovich, Keith; Gipson, Debbie; Michailidis, George; Pennathur, Subramaniam; Michigan Kidney Translational Core CPROBE Investigator Group | Journal of the American Society of Nephrology : JASN. | 29021384 | 2018 Jan; |
| Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion. | Verhoeven, Koen J F; Verbon, Eline H; van Gurp, Thomas P; Oplaat, Carla; Ferreira de Carvalho, Julie; Morse, Alison M; Stahl, Mark; Macel, Mirka; McIntyre, Lauren M | The New phytologist. | 29034954 | 2017 Oct 16; |
| Activation of intestinal hypoxia-inducible factor 2? during obesity contributes to hepatic steatosis. | Xie, Cen; Yagai, Tomoki; Luo, Yuhong; Liang, Xianyi; Chen, Tao; Wang, Qiong; Sun, Dongxue; Zhao, Jie; Ramakrishnan, Sadeesh K; Sun, Lulu; Jiang, Chunmei; Xue, Xiang; Tian, Yuan; Krausz, Kristopher W; Patterson, Andrew D; Shah, Yatrik M; Wu, Yue; Jiang, Changtao; Gonzalez, Frank J | Nature medicine. | 29035368 | 2017 Nov; |
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| Elevated ozone reduces photosynthetic carbon gain by accelerating leaf senescence of inbred and hybrid maize in a genotype-specific manner. | Yendrek, Craig R; Erice, Gorka; Montes, Christopher M; Tomaz, Tiago; Sorgini, Crystal A; Brown, Patrick J; McIntyre, Lauren M; Leakey, Andrew D B; Ainsworth, Elizabeth A | Plant, cell & environment. | 29044553 | 2017 Dec; |
| Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung. | Garg, Neha; Wang, Mingxun; Hyde, Embriette; da Silva, Ricardo R; Melnik, Alexey V; Protsyuk, Ivan; Bouslimani, Amina; Lim, Yan Wei; Wong, Richard; Humphrey, Greg; Ackermann, Gail; Spivey, Timothy; Brouha, Sharon S; Bandeira, Nuno; Lin, Grace Y; Rohwer, Forest; Conrad, Douglas J; Alexandrov, Theodore; Knight, Rob; Dorrestein, Pieter C | Cell host & microbe. | 29056429 | 2017 Nov 08; |
| Metabolic Comparison of Dorsal versus Ventral Cells Directly in the Live 8-cell Frog Embryo by Microprobe Single-cell CE-ESI-MS. | Onjiko, Rosemary M; Plotnick, David O; Moody, Sally A; Nemes, Peter | Analytical methods : advancing methods and applications. | 29062391 | 2017 Sep 14; |
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| Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy. | Bla?enovi?, Ivana; Kind, Tobias; Torba?inovi?, Hrvoje; Obrenovi?, Slobodan; Mehta, Sajjan S; Tsugawa, Hiroshi; Wermuth, Tobias; Schauer, Nicolas; Jahn, Martina; Biedendieck, Rebekka; Jahn, Dieter; Fiehn, Oliver | Journal of cheminformatics. | 29086039 | 2017 May 25; |
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| LipidQC: Method Validation Tool for Visual Comparison to SRM 1950 Using NIST Interlaboratory Comparison Exercise Lipid Consensus Mean Estimate Values. | Ulmer, Candice Z; Ragland, Jared M; Koelmel, Jeremy P; Heckert, Alan; Jones, Christina M; Garrett, Timothy J; Yost, Richard A; Bowden, John A | Analytical chemistry. | 29148710 | 2017 12 19; |
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| Noninvasive liquid diet delivery of stable isotopes into mouse models for deep metabolic network tracing. | Sun, Ramon C; Fan, Teresa W-M; Deng, Pan; Higashi, Richard M; Lane, Andrew N; Le, Anh-Thu; Scott, Timothy L; Sun, Qiushi; Warmoes, Marc O; Yang, Ye | Nature communications. | 29158483 | 2017 Nov 21; |
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| Granzyme A in Human Platelets Regulates the Synthesis of Proinflammatory Cytokines by Monocytes in Aging. | Campbell, Robert A; Franks, Zechariah; Bhatnagar, Anish; Rowley, Jesse W; Manne, Bhanu K; Supiano, Mark A; Schwertz, Hansjorg; Weyrich, Andrew S; Rondina, Matthew T | Journal of immunology (Baltimore, Md. : 1950). | 29167233 | 2018 Jan 01; |
| Diet-induced obesity and weight loss alter bile acid concentrations and bile acid-sensitive gene expression in insulin target tissues of C57BL/6J mice. | La Frano, Michael R; Hernandez-Carretero, Angelina; Weber, Natalie; Borkowski, Kamil; Pedersen, Theresa L; Osborn, Olivia; Newman, John W | Nutrition research (New York, N.Y.). | 29173647 | 2017 Oct; |
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| Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients. | Wandro, Stephen; Carmody, Lisa; Gallagher, Tara; LiPuma, John J; Whiteson, Katrine | mSystems. | 29202048 | 2017 Nov-Dec; |
| Metabolomics of tomato xylem sap during bacterial wilt reveals Ralstonia solanacearum produces abundant putrescine, a metabolite that accelerates wilt disease. | Lowe-Power, Tiffany M; Hendrich, Connor G; von Roepenack-Lahaye, Edda; Li, Bin; Wu, Dousheng; Mitra, Raka; Dalsing, Beth L; Ricca, Patrizia; Naidoo, Jacinth; Cook, David; Jancewicz, Amy; Masson, Patrick; Thomma, Bart; Lahaye, Thomas; Michael, Anthony J; Allen, Caitilyn | Environmental microbiology. | 29215193 | 2018 04; |
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| Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids. | Schwertz, Hansjörg; Rowley, Jesse W; Schumann, Gerald G; Thorack, Ulrike; Campbell, Robert A; Manne, Bhanu Kanth; Zimmerman, Guy A; Weyrich, Andrew S; Rondina, Matthew T | Arteriosclerosis, thrombosis, and vascular biology. | 29301786 | 2018 Jan 04; |
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| Radioresistant Cervical Cancers Are Sensitive to Inhibition of Glycolysis and Redox Metabolism. | Rashmi, Ramachandran; Huang, Xiaojing; Floberg, John M; Elhammali, Adnan E; McCormick, Michael L; Patti, Gary J; Spitz, Douglas R; Schwarz, Julie K | Cancer research. | 29339540 | 2018 03 15; |
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| l-Carnitine Inhibits Lipopolysaccharide-Induced Nitric Oxide Production of SIM-A9 Microglia Cells. | Gill, Emily L; Raman, Shreya; Yost, Richard A; Garrett, Timothy J; Vedam-Mai, Vinata | ACS chemical neuroscience. | 29370524 | 2018 05 16; |
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| A role for long-chain acyl-CoA synthetase-4 (ACSL4) in diet-induced phospholipid remodeling and obesity-associated adipocyte dysfunction. | Killion, Elizabeth A; Reeves, Andrew R; El Azzouny, Mahmoud A; Yan, Qing-Wu; Surujon, Defne; Griffin, John D; Bowman, Thomas A; Wang, Chunyan; Matthan, Nirupa R; Klett, Eric L; Kong, Dong; Newman, John W; Han, Xianlin; Lee, Mi-Jeong; Coleman, Rosalind A; Greenberg, Andrew S | Molecular metabolism. | 29398618 | 2018 Mar; |
| Probing cardiac metabolism by hyperpolarized 13C MR using an exclusively endogenous substrate mixture and photo-induced nonpersistent radicals. | Bastiaansen, Jessica A M; Yoshihara, Hikari A I; Capozzi, Andrea; Schwitter, Juerg; Gruetter, Rolf; Merritt, Matthew E; Comment, Arnaud | Magnetic resonance in medicine. | 29411415 | 2018 05; |
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| First and second trimester urinary metabolic profiles and fetal growth restriction: an exploratory nested case-control study within the infant development and environment study. | Luthra, Gauri; Vuckovic, Ivan; Bangdiwala, A; Gray, H; Redmon, J B; Barrett, E S; Sathyanarayana, S; Nguyen, R H N; Swan, S H; Zhang, S; Dzeja, P; Macura, S I; Nair, K S | BMC pregnancy and childbirth. | 29422013 | 2018 02 08; |
| The Effects of Glaucoma Drainage Devices on Oxygen Tension, Glycolytic Metabolites, and Metabolomics Profile of Aqueous Humor in the Rabbit. | Williamson, Blake K; Hawkey, Nathan M; Blake, Diane A; Frenkel, Joshua W; McDaniel, Kevin P; Davis, Justin K; Satija, Celine; Beazer, Alex; Dhungana, Suraj; Carlson, James; McRitchie, Susan; Ayyala, Ramesh S | Translational vision science & technology. | 29423340 | 2018 Feb; |
| Lipid metabolism and lipophagy in cancer. | Maan, Meenu; Peters, Jeffrey M; Dutta, Mainak; Patterson, Andrew D | Biochemical and biophysical research communications. | 29438712 | 2018 Feb 10; |
| Interferon Gamma Induces Reversible Metabolic Reprogramming of M1 Macrophages to Sustain Cell Viability and Pro-Inflammatory Activity. | Wang, Feilong; Zhang, Song; Jeon, Ryounghoon; Vuckovic, Ivan; Jiang, Xintong; Lerman, Amir; Folmes, Clifford D; Dzeja, Petras D; Herrmann, Joerg | EBioMedicine. | 29463472 | 2018 Apr; |
| Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma. | Smestad, John; Hamidi, Oksana; Wang, Lin; Holte, Molly Nelson; Khazal, Fatimah Al; Erber, Luke; Chen, Yue; Maher 3rd, L James | Oncotarget. | 29464059 | 2018 Jan 19; |
| RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites. | Zhang, Bofei; Hu, Senyang; Baskin, Elizabeth; Patt, Andrew; Siddiqui, Jalal K; Mathé, Ewy A | Metabolites. | 29470400 | 2018 Feb 22; |
| Intestine farnesoid X receptor agonist and the gut microbiota activate G-protein bile acid receptor-1 signaling to improve metabolism. | Pathak, Preeti; Xie, Cen; Nichols, Robert G; Ferrell, Jessica M; Boehme, Shannon; Krausz, Kristopher W; Patterson, Andrew D; Gonzalez, Frank J; Chiang, John Y L | Hepatology (Baltimore, Md.). | 29486523 | 2018 10; |
| In vivo hyperpolarization transfer in a clinical MRI scanner. | von Morze, Cornelius; Reed, Galen D; Larson, Peder E; Mammoli, Daniele; Chen, Albert P; Tropp, James; Van Criekinge, Mark; Ohliger, Michael A; Kurhanewicz, John; Vigneron, Daniel B; Merritt, Matthew E | Magnetic resonance in medicine. | 29488244 | 2018 08; |
| Blueberry Supplementation Influences the Gut Microbiota, Inflammation, and Insulin Resistance in High-Fat-Diet-Fed Rats. | Lee, Sunhye; Keirsey, Katherine I; Kirkland, Rebecca; Grunewald, Zachary I; Fischer, Joan G; de La Serre, Claire B | The Journal of nutrition. | 29490092 | 2018 02 01; |
| Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry. | Kyle, Jennifer E; Aly, Noor; Zheng, Xueyun; Burnum-Johnson, Kristin E; Smith, Richard D; Baker, Erin S | Bioanalysis. | 29494212 | 2018 Mar 01; |
| Metabolomics Reveals Aryl Hydrocarbon Receptor Activation Induces Liver and Mammary Gland Metabolic Dysfunction in Lactating Mice. | Belton, Kerry R; Tian, Yuan; Zhang, Limin; Anitha, Mallappa; Smith, Philip B; Perdew, Gary H; Patterson, Andrew D | Journal of proteome research. | 29521512 | 2018 04 06; |
| Acute loss of iron-sulfur clusters results in metabolic reprogramming and generation of lipid droplets in mammalian cells. | Crooks, Daniel R; Maio, Nunziata; Lane, Andrew N; Jarnik, Michal; Higashi, Richard M; Haller, Ronald G; Yang, Ye; Fan, Teresa W-M; Linehan, W Marston; Rouault, Tracey A | The Journal of biological chemistry. | 29523684 | ; |
| The aryl hydrocarbon receptor as a moderator of host-microbiota communication. | Zhang, Limin; Nichols, Robert G; Patterson, Andrew D | Current opinion in toxicology. | 29527582 | 2017 Feb; |
| Lower plasma choline levels are associated with sleepiness symptoms. | Pak, Victoria M; Dai, Feng; Keenan, Brendan T; Gooneratne, Nalaka S; Pack, Allan I | Sleep medicine. | 29530375 | 2018 Apr; |
| Probing the application range and selectivity of a differential mobility spectrometry-mass spectrometry platform for metabolomics. | Wernisch, Stefanie; Afshinnia, Farsad; Rajendiran, Thekkelnaycke; Pennathur, Subramaniam | Analytical and bioanalytical chemistry. | 29532192 | 2018 May; |
| Alpha-oxoglutarate inhibits the proliferation of immortalized normal bladder epithelial cells via an epigenetic switch involving ARID1A. | Shahid, Muhammad; Gull, Nicole; Yeon, Austin; Cho, Eunho; Bae, Jooeun; Yoon, Hyun Seok; You, Sungyong; Yoon, Hana; Kim, Minjung; Berman, Benjamin P; Kim, Jayoung | Scientific reports. | 29540744 | 2018 Mar 14; |
| Antibacterial Muraymycins from Mutant Strains of Streptomyces sp. NRRL 30471. | Cui, Zheng; Wang, Xiachang; Koppermann, Stefan; Thorson, Jon S; Ducho, Christian; Van Lanen, Steven G | Journal of natural products | 29553733 | 2018 04 27 |
| Patatin-like phospholipase domain-containing protein 3 promotes transfers of essential fatty acids from triglycerides to phospholipids in hepatic lipid droplets. | Mitsche, Matthew A; Hobbs, Helen H; Cohen, Jonathan C | The Journal of biological chemistry. | 29555681 | 2018 May 04; |
| Urinary Metabolites Associated with Blood Pressure on a Low- or High-Sodium Diet. | Cheng, Yuan; Song, Haiying; Pan, Xiaoqing; Xue, Hong; Wan, Yifei; Wang, Tao; Tian, Zhongmin; Hou, Entai; Lanza, Ian R; Liu, Pengyuan; Liu, Yong; Laud, Purushottam W; Usa, Kristie; He, Yongcheng; Liang, Mingyu | Theranostics. | 29556335 | 2018; |
| Beyond Structure: Defining the Function of the Gut Using Omic Approaches for Rational Design of Personalized Therapeutics. | Theriot, Casey M | mSystems. | 29556548 | 2018 Mar-Apr; |
| A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. | Zheng, Xueyun; Aly, Noor A; Zhou, Yuxuan; Dupuis, Kevin T; Bilbao, Aivett; Paurus, Vanessa L; Orton, Daniel J; Wilson, Ryan; Payne, Samuel H; Smith, Richard D; Baker, Erin S | Chemical science. | 29568436 | 2017 Nov 01; |
| Innovations in asthma therapy: is there a role for inhaled statins? | Zeki, Amir A; Elbadawi-Sidhu, Mona | Expert review of respiratory medicine. | 29575963 | 2018 Jun; |
| Development of an Ex-Situ Limb Perfusion System for a Rodent Model. | Gok, Emre; Alghanem, Fares; Moon, Ruth; Guy, Erin; Rojas-Pena, Alvaro; Bartlett, Robert H; Ozer, Kagan | ASAIO journal (American Society for Artificial Internal Organs : 1992). | 29595532 | 2018 Mar 26; |
| Shifts in the Gut Metabolome and Clostridium difficile Transcriptome throughout Colonization and Infection in a Mouse Model. | Fletcher, Joshua R; Erwin, Samantha; Lanzas, Cristina; Theriot, Casey M | mSphere. | 29600278 | 2018 Mar-Apr; |
| Lower Concentrations of Circulating Medium and Long-Chain Acylcarnitines Characterize Insulin Resistance in Persons with HIV. | Bailin, Samuel S; Jenkins, Cathy A; Petucci, Christopher; Culver, Jeffrey A; Shepherd, Bryan E; Fessel, Joshua P; Hulgan, Todd; Koethe, John R | AIDS research and human retroviruses. | 29607651 | 2018 06; |
| Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa. | Phan, Joann; Gallagher, Tara; Oliver, Andrew; England, Whitney E; Whiteson, Katrine | FEMS microbiology letters | 29617986 | 2018 May 01 |
| Pioglitazone improves hepatic mitochondrial function in a mouse model of nonalcoholic steatohepatitis. | Kalavalapalli, Srilaxmi; Bril, Fernando; Koelmel, Jeremy P; Abdo, Kaitlyn; Guingab, Joy; Andrews, Paige; Li, Wen-Yi; Jose, Dhanya; Yost, Richard A; Frye, Reginald F; Garrett, Timothy J; Cusi, Kenneth; Sunny, Nishanth E | American journal of physiology. Endocrinology and metabolism. | 29634314 | 2018 08 01; |
| Associations of the plasma lipidome with mortality in the acute respiratory distress syndrome: a longitudinal cohort study. | Maile, Michael D; Standiford, Theodore J; Engoren, Milo C; Stringer, Kathleen A; Jewell, Elizabeth S; Rajendiran, Thekkelnaycke M; Soni, Tanu; Burant, Charles F | Respiratory research. | 29636049 | 2018 Apr 10; |
| Restoration of short chain fatty acid and bile acid metabolism following fecal microbiota transplantation in patients with recurrent Clostridium difficile infection. | Seekatz, Anna M; Theriot, Casey M; Rao, Krishna; Chang, Yu-Ming; Freeman, Alison E; Kao, John Y; Young, Vincent B | Anaerobe. | 29654837 | 2018 Apr 12; |
| Obese Mice Losing Weight Due to trans-10,cis-12 Conjugated Linoleic Acid Supplementation or Food Restriction Harbor Distinct Gut Microbiota. | den Hartigh, Laura J; Gao, Zhan; Goodspeed, Leela; Wang, Shari; Das, Arun K; Burant, Charles F; Chait, Alan; Blaser, Martin J | The Journal of nutrition | 29659960 | 2018 Apr 01 |
| Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed by Neuropeptidomics Mass Spectrometry. | Hook, Vivian; Lietz, Christopher B; Podvin, Sonia; Cajka, Tomas; Fiehn, Oliver | Journal of the American Society for Mass Spectrometry. | 29667161 | 2018 May; |
| Propagating annotations of molecular networks using in silico fragmentation. | da Silva, Ricardo R; Wang, Mingxun; Nothias, Louis-Félix; van der Hooft, Justin J J; Caraballo-Rodríguez, Andrés Mauricio; Fox, Evan; Balunas, Marcy J; Klassen, Jonathan L; Lopes, Norberto Peporine; Dorrestein, Pieter C | PLoS computational biology. | 29668671 | 2018 04; |
| Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue. | Sun, Xuezheng; Stewart, Delisha A; Sandhu, Rupninder; Kirk, Erin L; Pathmasiri, Wimal W; McRitchie, Susan L; Clark, Robert F; Troester, Melissa A; Sumner, Susan J | PloS one. | 29668675 | 2018; |
| Menin regulates the serine biosynthetic pathway in Ewing sarcoma. | Svoboda, Laurie K; Teh, Selina Shiqing K; Sud, Sudha; Kerk, Samuel; Zebolsky, Aaron; Treichel, Sydney; Thomas, Dafydd; Halbrook, Christopher J; Lee, Ho-Joon; Kremer, Daniel; Zhang, Li; Klossowski, Szymon; Bankhead, Armand R; Magnuson, Brian; Ljungman, Mats; Cierpicki, Tomasz; Grembecka, Jolanta; Lyssiotis, Costas A; Lawlor, Elizabeth R | The Journal of pathology. | 29672864 | 2018 Jul; |
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| Tandem Mass Spectrometry and Ion Mobility Reveals Structural Insight into Eicosanoid Product Ion Formation. | Di Giovanni, James P; Barkley, Robert M; Jones, David N M; Hankin, Joseph A; Murphy, Robert C | Journal of the American Society for Mass Spectrometry. | 29687419 | 2018 06; |
| Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages. | Krishnan, Smitha; Ding, Yufang; Saedi, Nima; Choi, Maria; Sridharan, Gautham V; Sherr, David H; Yarmush, Martin L; Alaniz, Robert C; Jayaraman, Arul; Lee, Kyongbum | Cell reports. | 29694888 | 2018 04 24; |
| Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites. | Gao, Bei; Gallagher, Tara; Zhang, Ying; Elbadawi-Sidhu, Mona; Lai, Zijuan; Fiehn, Oliver; Whiteson, Katrine L | mSphere. | 29695623 | 2018 Apr 25; |
| Celecoxib use and circulating oxylipins in a colon polyp prevention trial. | Martinez, Jessica A; Yang, Jun; Wertheim, Betsy C; Roe, Denise J; Schriewer, Alexander; Lance, Peter; Alberts, David S; Hammock, Bruce D; Thompson, Patricia A | PloS one. | 29698447 | 2018; |
| Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer. | Hale, Vanessa L; Jeraldo, Patricio; Mundy, Michael; Yao, Janet; Keeney, Gary; Scott, Nancy; Cheek, E Heidi; Davidson, Jennifer; Green, Megan; Martinez, Christine; Lehman, John; Pettry, Chandra; Reed, Erica; Lyke, Kelly; White, Bryan A; Diener, Christian; Resendis-Antonio, Osbaldo; Gransee, Jaime; Dutta, Tumpa; Petterson, Xuan-Mai; Boardman, Lisa; Larson, David; Nelson, Heidi; Chia, Nicholas | Methods (San Diego, Calif.). | 29704665 | 2018 Oct 01; |
| An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies. | Bilbao, Aivett; Gibbons, Bryson C; Slysz, Gordon W; Crowell, Kevin L; Monroe, Matthew E; Ibrahim, Yehia M; Smith, Richard D; Payne, Samuel H; Baker, Erin S | International journal of mass spectrometry. | 29706793 | 2018 Apr; |
| Role of Selenof as a Gatekeeper of Secreted Disulfide-Rich Glycoproteins. | Yim, Sun Hee; Everley, Robert A; Schildberg, Frank A; Lee, Sang-Goo; Orsi, Andrea; Barbati, Zachary R; Karatepe, Kutay; Fomenko, Dmitry E; Tsuji, Petra A; Luo, Hongbo R; Gygi, Steven P; Sitia, Roberto; Sharpe, Arlene H; Hatfield, Dolph L; Gladyshev, Vadim N | Cell reports | 29719252 | 2018 05 01 |
| Atypical Antipsychotic Exposure May Not Differentiate Metabolic Phenotypes of Patients with Schizophrenia. | Ward, Kristen M; Yeoman, Larisa; McHugh, Cora; Kraal, A Zarina; Flowers, Stephanie A; Rothberg, Amy E; Karnovsky, Alla; Das, Arun K; Ellingrod, Vicki L; Stringer, Kathleen A | Pharmacotherapy. | 29722909 | 2018 Jun; |
| Pharmacometabolomic signature links simvastatin therapy and insulin resistance. | Elbadawi-Sidhu, Mona; Baillie, Rebecca A; Zhu, Hongjie; Chen, Yii-Der Ida; Goodarzi, Mark O; Rotter, Jerome I; Krauss, Ronald M; Fiehn, Oliver; Kaddurah-Daouk, Rima | Metabolomics : open access. | 29732238 | 2017 Jan; |
| A novel inhibitor of pyruvate dehydrogenase kinase stimulates myocardial carbohydrate oxidation in diet-induced obesity. | Wu, Cheng-Yang; Satapati, Santhosh; Gui, Wenjun; Wynn, R Max; Sharma, Gaurav; Lou, Mingliang; Qi, Xiangbing; Burgess, Shawn C; Malloy, Craig; Khemtong, Chalermchai; Sherry, A Dean; Chuang, David T; Merritt, Matthew E | The Journal of biological chemistry. | 29739849 | ; |
| Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. | Bla?enovi?, Ivana; Kind, Tobias; Ji, Jian; Fiehn, Oliver | Metabolites. | 29748461 | 2018 May 10; |
| An inhibitor of soluble epoxide hydrolase ameliorates diabetes-induced learning and memory impairment in rats. | Minaz, Nathani; Razdan, Rema; Hammock, Bruce D; Goswami, Sumanta Kumar | Prostaglandins & other lipid mediators. | 29751149 | 2018 05; |
| Oral ibuprofen differentially affects plasma and sweat lipid mediator profiles in healthy adult males. | Agrawal, Karan; Bosviel, Rémy; Piccolo, Brian D; Newman, John W | Prostaglandins & other lipid mediators. | 29778785 | 2018 May 17; |
| Hyperglucagonemia Mitigates the Effect of Metformin on Glucose Production in Prediabetes. | Konopka, Adam R; Esponda, Raul Ruiz; Robinson, Matthew M; Johnson, Matthew L; Carter, Rickey E; Schiavon, Michele; Cobelli, Claudio; Wondisford, Fredric E; Lanza, Ian R; Nair, K Sreekumaran | Cell reports. | 29791861 | 2018 May 22; |
| Male lifespan extension with 17-? estradiol is linked to a sex-specific metabolomic response modulated by gonadal hormones in mice. | Garratt, Michael; Lagerborg, Kim A; Tsai, Yi-Miau; Galecki, Andrzej; Jain, Mohit; Miller, Richard A | Aging cell. | 29806096 | 2018 May 27; |
| Celecoxib Does Not Protect against Fibrosis and Inflammation in a Carbon Tetrachloride-Induced Model of Liver Injury. | Harris, Todd R; Kodani, Sean; Rand, Amy A; Yang, Jun; Imai, Denise M; Hwang, Sung Hee; Hammock, Bruce D | Molecular pharmacology. | 29844231 | ; |
| Cancer in the crosshairs: targeting cancer metabolism with hyperpolarized carbon-13 MRI technology. | von Morze, Cornelius; Merritt, Matthew E | NMR in biomedicine. | 29870085 | 2018 Jun 05; |
| A novel triple-tracer approach to assess postprandial protein turnover. | Moran, Antoinette; Toffolo, Gianna; Schiavon, Michele; Vella, Adrian; Klaus, Katherine; Cobelli, Claudio; Nair, K Sreekumaran | American journal of physiology. Endocrinology and metabolism. | 29870679 | 2018 10 01; |
| Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer. | Zaytseva, Yekaterina Y; Rychahou, Piotr G; Le, Anh-Thu; Scott, Timothy L; Flight, Robert M; Kim, Ji Tae; Harris, Jennifer; Liu, Jinpeng; Wang, Chi; Morris, Andrew J; Sivakumaran, Theru A; Fan, Teresa; Moseley, Hunter; Gao, Tianyan; Lee, Eun Y; Weiss, Heidi L; Heuer, Timothy S; Kemble, George; Evers, Mark | Oncotarget. | 29872506 | 2018 May 15; |
| The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis. | Wandro, Stephen; Osborne, Stephanie; Enriquez, Claudia; Bixby, Christine; Arrieta, Antonio; Whiteson, Katrine | mSphere. | 29875143 | 2018 Jun 27; |
| Effects of atopic dermatitis and gender on sebum lipid mediator and fatty acid profiles. | Agrawal, Karan; Hassoun, Lauren A; Foolad, Negar; Borkowski, Kamil; Pedersen, Theresa L; Sivamani, Raja K; Newman, John W | Prostaglandins, leukotrienes, and essential fatty acids. | 29886894 | 2018 07; |
| Chromatin Succinylation Correlates with Active Gene Expression and Is Perturbed by Defective TCA Cycle Metabolism. | Smestad, John; Erber, Luke; Chen, Yue; Maher 3rd, L James | iScience. | 29888767 | 2018 Apr 27; |
| Altered tricarboxylic acid cycle flux in primary myotubes from severely obese humans. | Zou, Kai; Hinkley, J Matthew; Park, Sanghee; Zheng, Donghai; Jones, Terry E; Pories, Walter J; Hornby, Pamela J; Lenhard, James; Dohm, G Lynis; Houmard, Joseph A | International journal of obesity (2005). | 29892037 | 2019 04; |
| Lower Fasted-State but Greater Increase in Muscle Protein Synthesis in Response to Elevated Plasma Amino Acids in Obesity. | Tran, Lee; Kras, Katon A; Hoffman, Nyssa; Ravichandran, Jayachandran; Dickinson, Jared M; D'Lugos, Andrew; Carroll, Chad C; Patel, Shivam H; Mandarino, Lawrence J; Roust, Lori; Katsanos, Christos S | Obesity (Silver Spring, Md.). | 29896930 | 2018 Jul; |
| Oleocanthal-rich extra virgin olive oil demonstrates acute anti-platelet effects in healthy men in a randomized trial. | Agrawal, Karan; Melliou, Eleni; Li, Xueqi; Pedersen, Theresa L; Wang, Selina C; Magiatis, Prokopios; Newman, John W; Holt, Roberta R | Journal of functional foods. | 29904393 | ; |
| The MPLEx Protocol for Multi-omic Analyses of Soil Samples. | Nicora, Carrie D; Burnum-Johnson, Kristin E; Nakayasu, Ernesto S; Casey, Cameron P; White 3rd, Richard A; Roy Chowdhury, Taniya; Kyle, Jennifer E; Kim, Young-Mo; Smith, Richard D; Metz, Thomas O; Jansson, Janet K; Baker, Erin S | Journal of visualized experiments : JoVE. | 29912205 | 2018 05 30; |
| Amino acid and lipid associated plasma metabolomic patterns are related to healthspan indicators with ageing. | Johnson, Lawrence C; Martens, Christopher R; Santos-Parker, Jessica R; Bassett, Candace J; Strahler, Talia R; Cruickshank-Quinn, Charmion; Reisdorph, Nichole; McQueen, Matthew B; Seals, Douglas R | Clinical science (London, England : 1979). | 29914938 | 2018 08 31; |
| Hepatic steatosis risk is partly driven by increased de novo lipogenesis following carbohydrate consumption. | Sanders, Francis W B; Acharjee, Animesh; Walker, Celia; Marney, Luke; Roberts, Lee D; Imamura, Fumiaki; Jenkins, Benjamin; Case, Jack; Ray, Sumantra; Virtue, Samuel; Vidal-Puig, Antonio; Kuh, Diana; Hardy, Rebecca; Allison, Michael; Forouhi, Nita; Murray, Andrew J; Wareham, Nick; Vacca, Michele; Koulman, Albert; Griffin, Julian L | Genome biology. | 29925420 | 2018 06 20; |
| Variable selection in omics data: A practical evaluation of small sample sizes. | Kirpich, Alexander; Ainsworth, Elizabeth A; Wedow, Jessica M; Newman, Jeremy R B; Michailidis, George; McIntyre, Lauren M | PloS one. | 29927942 | 2018; |
| GLP-2 receptor signaling controls circulating bile acid levels but not glucose homeostasis in Gcgr-/- mice and is dispensable for the metabolic benefits ensuing after vertical sleeve gastrectomy. | Patel, Anita; Yusta, Bernardo; Matthews, Dianne; Charron, Maureen J; Seeley, Randy J; Drucker, Daniel J | Molecular metabolism. | 29937214 | ; |
| Elevated Nicotinamide Phosphoribosyl Transferase in Skeletal Muscle Augments Exercise Performance and Mitochondrial Respiratory Capacity Following Exercise Training. | Brouwers, Bram; Stephens, Natalie A; Costford, Sheila R; Hopf, Meghan E; Ayala, Julio E; Yi, Fanchao; Xie, Hui; Li, Jian-Liang; Gardell, Stephen J; Sparks, Lauren M; Smith, Steven R | Frontiers in physiology. | 29942262 | 2018; |
| Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. | Nagy-Szakal, Dorottya; Barupal, Dinesh K; Lee, Bohyun; Che, Xiaoyu; Williams, Brent L; Kahn, Ellie J R; Ukaigwe, Joy E; Bateman, Lucinda; Klimas, Nancy G; Komaroff, Anthony L; Levine, Susan; Montoya, Jose G; Peterson, Daniel L; Levin, Bruce; Hornig, Mady; Fiehn, Oliver; Lipkin, W Ian | Scientific reports. | 29968805 | 2018 Jul 03; |
| Down-regulation of transient receptor potential melastatin member 7 prevents migration and invasion of renal cell carcinoma cells via inactivation of the Src and Akt pathway. | Ha, Yun-Sok; Kim, Yeon-Yong; Yu, Na Hee; Chun, So Young; Choi, Seock Hwan; Lee, Jun Nyung; Kim, Bum Soo; Yoo, Eun Sang; Kwon, Tae Gyun | Investigative and clinical urology. | 29984342 | 2018 Jul; |
| Use of principle component analysis to quantitatively score the equine metabolic syndrome phenotype in an Arabian horse population. | Lewis, Samantha L; Holl, Heather M; Long, Maureen T; Mallicote, Martha F; Brooks, Samantha A | PloS one. | 30001422 | 2018; |
| Menthol, a unique urinary volatile compound, is associated with chronic inflammation in interstitial cystitis. | Shahid, Muhammad; Lee, Min Young; Yeon, Austin; Cho, Eunho; Sairam, Vikram; Valdiviez, Luis; You, Sungyong; Kim, Jayoung | Scientific reports. | 30022124 | 2018 Jul 18; |
| Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism. | Zarrinpar, Amir; Chaix, Amandine; Xu, Zhenjiang Z; Chang, Max W; Marotz, Clarisse A; Saghatelian, Alan; Knight, Rob; Panda, Satchidananda | Nature communications. | 30030441 | 2018 Jul 20; |
| Noninvasive profiling of sweat-derived lipid mediators for cutaneous research. | Agrawal, Karan; Sivamani, Raja K; Newman, John W | Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI). | 30030941 | 2018 Jul 21; |
| Cation-Dependent Conformations in 25-Hydroxyvitamin D3-Cation Adducts Measured by Ion Mobility-Mass Spectrometry and Theoretical Modeling. | Chouinard, Christopher D; Cruzeiro, Vinicius Wilian D; Kemperman, Robin H J; Oranzi, Nicholas R; Roitberg, Adrian E; Yost, Richard A | International journal of mass spectrometry. | 30034270 | 2018 Sep; |
| Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. | MacLean, Brendan X; Pratt, Brian S; Egertson, Jarrett D; MacCoss, Michael J; Smith, Richard D; Baker, Erin S | Journal of the American Society for Mass Spectrometry. | 30047074 | 2018 Nov; |
| Gut microbiota and serum metabolite differences in African Americans and White Americans with high blood pressure. | Walejko, Jacquelyn M; Kim, Seungbum; Goel, Ruby; Handberg, Eileen M; Richards, Elaine M; Pepine, Carl J; Raizada, Mohan K | International journal of cardiology. | 30049487 | 2018 Jul 23; |
| Quantifying heterogeneity of expression data based on principal components. | Yang, Zi; Michailidis, George | Bioinformatics (Oxford, England). | 30060088 | 2019 02 15; |
| Chiral separation of diastereomers of the cyclic nonapeptides vasopressin and desmopressin by uniform field ion mobility mass spectrometry. | Phillips, Shawn T; Dodds, James N; Ellis, Berkley M; May, Jody C; McLean, John A | Chemical communications (Cambridge, England). | 30063231 | 2018 Aug 21; |
| Era of the Fourth Industrial Revolution and the Urologists' Journey to Navigating Big Omics Data. | Kim, Jayoung | International neurourology journal. | 30068072 | 2018 Jul; |
| Sex-associated differences in baseline urinary metabolites of healthy adults. | Fan, Sili; Yeon, Austin; Shahid, Muhammad; Anger, Jennifer T; Eilber, Karyn S; Fiehn, Oliver; Kim, Jayoung | Scientific reports. | 30089834 | 2018 08 08; |
| Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations. | Chouinard, Christopher D; Nagy, Gabe; Webb, Ian K; Garimella, Sandilya V B; Baker, Erin S; Ibrahim, Yehia M; Smith, Richard D | Analytical chemistry. | 30102518 | 2018 09 18; |
| Targeted Isolation of Neuroprotective Dicoumaroyl Neolignans and Lignans from Sageretia theezans Using in Silico Molecular Network Annotation Propagation-Based Dereplication. | Kang, Kyo Bin; Park, Eun Jin; da Silva, Ricardo R; Kim, Hyun Woo; Dorrestein, Pieter C; Sung, Sang Hyun | Journal of natural products. | 30106290 | 2018 08 24; |
| Umbilical cord blood metabolomics reveal distinct signatures of dyslipidemia prior to bronchopulmonary dysplasia and pulmonary hypertension. | La Frano, Michael R; Fahrmann, Johannes F; Grapov, Dmitry; Pedersen, Theresa L; Newman, John W; Fiehn, Oliver; Underwood, Mark A; Mestan, Karen; Steinhorn, Robin H; Wedgwood, Stephen | American journal of physiology. Lung cellular and molecular physiology. | 30113229 | 2018 11 01; |
| Metabolomic profiles associated with bone mineral density in US Caucasian women. | Zhao, Qi; Shen, Hui; Su, Kuan-Jui; Zhang, Ji-Gang; Tian, Qing; Zhao, Lan-Juan; Qiu, Chuan; Zhang, Qiang; Garrett, Timothy J; Liu, Jiawang; Deng, Hong-Wen | Nutrition & metabolism. | 30116286 | 2018; |
| MeCP2 isoform e1 mutant mice recapitulate motor and metabolic phenotypes of Rett syndrome. | Vogel Ciernia, Annie; Yasui, Dag H; Pride, Michael C; Durbin-Johnson, Blythe; Noronha, Adriana B; Chang, Alene; Knotts, Trina A; Rutkowsky, Jennifer R; Ramsey, Jon J; Crawley, Jacqueline N; LaSalle, Janine M | Human molecular genetics. | 30137367 | 2018 12 01; |
| Elevated lipoxygenase and cytochrome P450 products predict progression of chronic kidney disease. | Afshinnia, Farsad; Zeng, Lixia; Byun, Jaeman; Wernisch, Stefanie; Deo, Rajat; Chen, Jing; Hamm, Lee; Miller, Edgar R; Rhee, Eugene P; Fischer, Michael J; Sharma, Kumar; Feldman, Harold I; Michailidis, George; Pennathur, Subramaniam; CRIC Study Investigato | Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. | 30137494 | 2020 02 01; |
| A Robust and Quantitative Reporter System To Evaluate Noncanonical Amino Acid Incorporation in Yeast. | Stieglitz, Jessica T; Kehoe, Haixing P; Lei, Ming; Van Deventer, James A | ACS synthetic biology. | 30139255 | 2018 09 21; |
| StAR-related lipid transfer domain 11 (STARD11)-mediated ceramide transport mediates extracellular vesicle biogenesis. | Fukushima, Masanori; Dasgupta, Debanjali; Mauer, Amy S; Kakazu, Eiji; Nakao, Kazuhiko; Malhi, Harmeet | The Journal of biological chemistry. | 30139741 | 2018 Sep 28; |
| Integrated proteomic and phosphoproteomic analyses of cisplatin-sensitive and resistant bladder cancer cells reveal CDK2 network as a key therapeutic target. | Jung, Jae Hun; You, Sungyong; Oh, Jae Won; Yoon, Junhee; Yeon, Austin; Shahid, Muhammad; Cho, Eunho; Sairam, Vikram; Park, Taeeun D; Kim, Kwang Pyo; Kim, Jayoung | Cancer letters. | 30145203 | 2018 Nov 28; |
| Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function. | Lam, Wing Y; Jash, Arijita; Yao, Cong-Hui; D'Souza, Lucas; Wong, Rachel; Nunley, Ryan M; Meares, Gordon P; Patti, Gary J; Bhattacharya, Deepta | Cell reports. | 30157439 | 2018 Aug 28; |
| Trace Phosphate Improves ZIC-pHILIC Peak Shape, Sensitivity, and Coverage for Untargeted Metabolomics. | Spalding, Jonathan L; Naser, Fuad J; Mahieu, Nathaniel G; Johnson, Stephen L; Patti, Gary J | Journal of proteome research. | 30160483 | 2018 10 05; |
| Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations. | Nagy, Gabe; Chouinard, Christopher D; Attah, Isaac K; Webb, Ian K; Garimella, Sandilya V B; Ibrahim, Yehia M; Baker, Erin S; Smith, Richard D | Electrophoresis. | 30168603 | 2018 12; |
| Altered mitochondrial function in insulin-deficient and insulin-resistant states. | Ruegsegger, Gregory N; Creo, Ana L; Cortes, Tiffany M; Dasari, Surendra; Nair, K Sreekumaran | The Journal of clinical investigation. | 30168804 | 2018 08 31; |
| Glycolytic Stimulation Is Not a Requirement for M2 Macrophage Differentiation. | Wang, Feilong; Zhang, Song; Vuckovic, Ivan; Jeon, Ryounghoon; Lerman, Amir; Folmes, Clifford D; Dzeja, Petras P; Herrmann, Joerg | Cell metabolism. | 30184486 | 2018 09 04; |
| Plasma metabolomics analysis in sickle cell disease patients with albuminuria - an exploratory study. | Elsherif, Laila; Pathmasiri, Wimal; McRitchie, Susan; Archer, David R; Ataga, Kenneth I | British journal of haematology. | 30198565 | 2019 May; |
| Glutathione de novo synthesis but not recycling process coordinates with glutamine catabolism to control redox homeostasis and directs murine T cell differentiation. | Lian, Gaojian; Gnanaprakasam, Jn Rashida; Wang, Tingting; Wu, Ruohan; Chen, Xuyong; Liu, Lingling; Shen, Yuqing; Yang, Mao; Yang, Jun; Chen, Ying; Vasiliou, Vasilis; Cassel, Teresa A; Green, Douglas R; Liu, Yusen; Fan, Teresa Wm; Wang, Ruoning | eLife. | 30198844 | 2018 09 10; |
| Rewiring of cisplatin-resistant bladder cancer cells through epigenetic regulation of genes involved in amino acid metabolism. | Yeon, Austin; You, Sungyong; Kim, Minhyung; Gupta, Amit; Park, Myung Hee; Weisenberger, Daniel J; Liang, Gangning; Kim, Jayoung | Theranostics. | 30214636 | ; |
| Structural and Functional Analysis of the Gut Microbiome for Toxicologists. | Nichols, Robert G; Cai, Jingwei; Murray, Iain A; Koo, Imhoi; Smith, Philip B; Perdew, Gary H; Patterson, Andrew D | Current protocols in toxicology. | 30230220 | 2018 11; |
| Quantitative Proteomic Analysis Reveals Caffeine-Perturbed Proteomic Profiles in Normal Bladder Epithelial Cells. | Shahid, Muhammad; Kim, Minhyung; Yeon, Austin; Andres, Allen M; You, Sungyong; Kim, Jayoung | Proteomics. | 30232827 | 2018 Oct; |
| Effects of Centella asiatica extract on antioxidant status and liver metabolome of rotenone-treated rats using GC-MS. | Intararuchikul, Thidarat; Teerapattarakan, Narudol; Rodsiri, Ratchanee; Tantisira, Mayuree; Wohlgemuth, Gert; Fiehn, Oliver; Tansawat, Rossarin | Biomedical chromatography : BMC. | 30242859 | 2019 Feb; |
| Computational Removal of Undesired Mass Spectral Features Possessing Repeat Units via a Kendrick Mass Filter. | da Silva, Ricardo R; Vargas, Fernando; Ernst, Madeleine; Nguyen, Ngoc Hung; Bolleddu, Sanjana; Del Rosario, Krizia Karen; Tsunoda, Shirley M; Dorrestein, Pieter C; Jarmusch, Alan K | Journal of the American Society for Mass Spectrometry. | 30267361 | 2019 Feb; |
| Platelet-derived TLT-1 is a prognostic indicator in ALI/ARDS and prevents tissue damage in the lungs in a mouse model. | Morales-Ortíz, Jessica; Deal, Victoria; Reyes, Fiorella; Maldonado-Martínez, Gerónimo; Ledesma, Nahomy; Staback, Franklin; Croft, Cheyanne; Pacheco, Amanda; Ortiz-Zuazaga, Humberto; Yost, C Christian; Rowley, Jesse W; Madera, Bismark; John, Alex St; Chen, | Blood. | 30282800 | 2018 12 06; |
| Exosomal lipids for classifying early and late stage non-small cell lung cancer. | Fan, Teresa W M; Zhang, Xiaofei; Wang, Chi; Yang, Ye; Kang, Woo-Young; Arnold, Susanne; Higashi, Richard M; Liu, Jinze; Lane, Andrew N | Analytica chimica acta. | 30292300 | 2018 Dec 11; |
| Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites. | Zheng, Xueyun; Dupuis, Kevin T; Aly, Noor A; Zhou, Yuxuan; Smith, Francesca B; Tang, Keqi; Smith, Richard D; Baker, Erin S | Analytica chimica acta. | 30292301 | 2018 Dec 11; |
| Optimization of Folch, Bligh-Dyer, and Matyash sample-to-extraction solvent ratios for human plasma-based lipidomics studies. | Ulmer, Candice Z; Jones, Christina M; Yost, Richard A; Garrett, Timothy J; Bowden, John A | Analytica chimica acta. | 30292311 | 2018 Dec 11; |
| Metabolomic profiles and development of metabolic risk during the pubertal transition: a prospective study in the ELEMENT Project. | Perng, Wei; Tang, Lu; Song, Peter X K; Tellez-Rojo, Martha Maria; Cantoral, Alejandra; Peterson, Karen E | Pediatric research. | 30297880 | 2018 Oct 03; |
| Multi-omics Approach Reveals Metabolic Changes in the Heart at Birth. | Walejko, Jacquelyn M; Koelmel, Jeremy P; Garrett, Timothy J; Edison, Arthur S; Keller-Wood, Maureen | American journal of physiology. Endocrinology and metabolism. | 30300011 | 2018 Oct 09; |
| A Protocol to Compare Methods for Untargeted Metabolomics. | Wang, Lingjue; Naser, Fuad J; Spalding, Jonathan L; Patti, Gary J | Methods in molecular biology (Clifton, N.J.). | 30315456 | 2019; |
| A joint analysis of metabolomic profiles associated with muscle mass and strength in Caucasian women. | Zhao, Qi; Shen, Hui; Su, Kuan-Jui; Tian, Qing; Zhao, Lan-Juan; Qiu, Chuan; Garrett, Timothy J; Liu, Jiawang; Kakhniashvili, David; Deng, Hong-Wen | Aging. | 30318485 | 2018 Oct 14; |
| Gut Microbial Product Predicts Cardiovascular Risk in Chronic Kidney Disease Patients. | Jadoon, Adil; Mathew, Anna V; Byun, Jaeman; Gadegbeku, Crystal A; Gipson, Debbie S; Afshinnia, Farsad; Pennathur, Subramaniam; for the Michigan Kidney Translational Core CPROBE Investigator Group | American journal of nephrology. | 30326477 | 2018; |
| Mitochondrial ATP synthase ?-subunit production rate and ATP synthase specific activity are reduced in skeletal muscle of humans with obesity. | Tran, Lee; Langlais, Paul R; Hoffman, Nyssa; Roust, Lori; Katsanos, Christos S | Experimental physiology. | 30362197 | 2019 Jan; |
| Stable Isotope-Resolved Metabolomic Differences between Hormone-Responsive and Triple-Negative Breast Cancer Cell Lines. | Winnike, Jason H; Stewart, Delisha A; Pathmasiri, Wimal W; McRitchie, Susan L; Sumner, Susan J | International journal of breast cancer. | 30363973 | 2018; |
| Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicago spp. Revealed by Metabolomic and Gene Expression Profiles. | Gifford, Isaac; Battenberg, Kai; Vaniya, Arpana; Wilson, Alex; Tian, Li; Fiehn, Oliver; Berry, Alison M | Frontiers in plant science. | 30364174 | 2018; |
| Biochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors. | Holt, Melissa C; Assar, Zahra; Beheshti Zavareh, Reza; Lin, Lin; Anglin, Justin; Mashadova, Oksana; Haldar, Daniel; Mullarky, Edouard; Kremer, Daniel M; Cantley, Lewis C; Kimmelman, Alec C; Stein, Adam J; Lairson, Luke L; Lyssiotis, Costas A | Biochemistry. | 30365304 | 2018 Nov 27; |
| Sebaceous gland abnormalities in fatty acyl CoA reductase 2 (Far2) null mice result in primary cicatricial alopecia. | Sundberg, John P; Shen, Tong; Fiehn, Oliver; Rice, Robert H; Silva, Kathleen A; Kennedy, Victoria E; Gott, Nicholas E; Dionne, Louise A; Bechtold, Lesley S; Murray, Stephen A; Kuiper, Raoul; Pratt, C Herbert | PloS one. | 30372477 | 2018; |
| Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. | Hale, Vanessa L; Jeraldo, Patricio; Chen, Jun; Mundy, Michael; Yao, Janet; Priya, Sambhawa; Keeney, Gary; Lyke, Kelly; Ridlon, Jason; White, Bryan A; French, Amy J; Thibodeau, Stephen N; Diener, Christian; Resendis-Antonio, Osbaldo; Gransee, Jaime; Dutta, | Genome medicine. | 30376889 | 2018 10 31; |
| Influence of Experimental Conditions on the Ratio of 25-Hydroxyvitamin D3 Conformers for Validating a Liquid Chromatography/Ion Mobility-Mass Spectrometry Method for Routine Quantitation. | Oranzi, Nicholas R; Polfer, Nicolas C; Lei, Jiajun; Yost, Richard A | Analytical chemistry. | 30379063 | 2018 11 20; |
| Human-like hyperplastic prostate with low ZIP1 induced solely by Zn deficiency in rats. | Fong, Louise Y; Jing, Ruiyan; Smalley, Karl J; Wang, Zi-Xuan; Taccioli, Cristian; Fan, Sili; Chen, Hongping; Alder, Hansjuerg; Huebner, Kay; Farber, John L; Fiehn, Oliver; Croce, Carlo M | Proceedings of the National Academy of Sciences of the United States of America. | 30397150 | 2018 11 20; |
| Skeletal muscle interstitial fluid metabolomics at rest and associated with an exercise bout: application in rats and humans. | Zhang, Jie; Bhattacharyya, Sudeepa; Hickner, Robert C; Light, Alan R; Lambert, Christopher J; Gale, Bruce K; Fiehn, Oliver; Adams, Sean H | American journal of physiology. Endocrinology and metabolism. | 30398905 | 2019 01 01; |
| Epidermal growth factor expression as a predictor of chemotherapeutic resistance in muscle-invasive bladder cancer. | Mansour, Ahmed M; Abdelrahim, Mona; Laymon, Mahmoud; Elsherbeeny, Mamdouh; Sultan, Mohammed; Shokeir, Ahmed; Mosbah, Ahmed; Abol-Enein, Hassan; Awadalla, Amira; Cho, Eunho; Sairam, Vikram; Park, Taeeun D; Shahid, Muhammad; Kim, Jayoung | BMC urology. | 30413194 | 2018 Nov 09; |
| Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity. | Cai, Jingwei; Nichols, Robert G; Koo, Imhoi; Kalikow, Zachary A; Zhang, Limin; Tian, Yuan; Zhang, Jingtao; Smith, Philip B; Patterson, Andrew D | mSystems. | 30417115 | 2018 Nov-Dec; |
| Interplay of Nitric Oxide Synthase (NOS) and SrrAB in Modulation of Staphylococcus aureus Metabolism and Virulence. | James, Kimberly L; Mogen, Austin B; Brandwein, Jessica N; Orsini, Silvia S; Ridder, Miranda J; Markiewicz, Mary A; Bose, Jeffrey L; Rice, Kelly C | Infection and immunity. | 30420450 | 2019 Feb; |
| Isotope Tracing Untargeted Metabolomics Reveals Macrophage Polarization-State-Specific Metabolic Coordination across Intracellular Compartments. | Puchalska, Patrycja; Huang, Xiaojing; Martin, Shannon E; Han, Xianlin; Patti, Gary J; Crawford, Peter A | iScience. | 30448730 | 2018 Nov 02; |
| Hepatocyte-Macrophage Acetoacetate Shuttle Protects against Tissue Fibrosis. | Puchalska, Patrycja; Martin, Shannon E; Huang, Xiaojing; Lengfeld, Justin E; Daniel, Bence; Graham, Mark J; Han, Xianlin; Nagy, Laszlo; Patti, Gary J; Crawford, Peter A | Cell metabolism. | 30449686 | 2018 Nov 12; |
| Generation and quality control of lipidomics data for the alzheimer's disease neuroimaging initiative cohort. | Barupal, Dinesh Kumar; Fan, Sili; Wancewicz, Benjamin; Cajka, Tomas; Sa, Michael; Showalter, Megan R; Baillie, Rebecca; Tenenbaum, Jessica D; Louie, Gregory; Alzheimer?s Disease Neuroimaging Initiative; Alzheimer?s Disease Metabolomics Consortium; Kaddurah-Daouk, Rima; Fiehn, Oliver | Scientific data. | 30457571 | 2018 Nov 20; |
| Asymmetrical flow field-flow fractionation for improved characterization of human plasma lipoproteins. | Bria, Carmen R M; Afshinnia, Farsad; Skelly, Patrick W; Rajendiran, Thekkelnaycke M; Kayampilly, Pradeep; Thomas, Thommey P; Andreev, Victor P; Pennathur, Subramaniam; Kim Ratanathanawongs Williams, S | Analytical and bioanalytical chemistry. | 30470915 | 2018 Nov 23; |
| Characterization of the antibacterial activity of Bald's eyesalve against drug resistant Staphylococcus aureus and Pseudomonas aeruginosa. | Fuchs, Amanda L; Weaver Jr, Alan J; Tripet, Brian P; Ammons, Mary Cloud B; Teintze, Martin; Copié, Valérie | PloS one. | 30485362 | 2018; |
| New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells. | Couvillion, Sneha P; Zhu, Ying; Nagy, Gabe; Adkins, Joshua N; Ansong, Charles; Renslow, Ryan S; Piehowski, Paul D; Ibrahim, Yehia M; Kelly, Ryan T; Metz, Thomas O | The Analyst. | 30507980 | 2018 Dec 03; |
| Effects of Gut Bacteria Depletion and High-Na+ and Low-K+ Intake on Circulating Levels of Biogenic Amines. | Bla?enovi?, Ivana; Oh, Young Taek; Li, Fan; Ji, Jian; Nguyen, Ahn-Khoi; Wancewicz, Benjamin; Bender, Jeffrey M; Fiehn, Oliver; Youn, Jang H | Molecular nutrition & food research. | 30513547 | 2019 02; |
| FoxO Transcription Factors Are Critical Regulators of Diabetes-Related Muscle Atrophy. | O'Neill, Brian T; Bhardwaj, Gourav; Penniman, Christie M; Krumpoch, Megan T; Suarez Beltran, Pablo A; Klaus, Katherine; Poro, Kennedy; Li, Mengyao; Pan, Hui; Dreyfuss, Jonathan M; Nair, K Sreekumaran; Kahn, C Ronald | Diabetes. | 30523026 | 2019 Mar; |
| Centromere protein F (CENPF), a microtubule binding protein, modulates cancer metabolism by regulating pyruvate kinase M2 phosphorylation signaling. | Shahid, Muhammad; Lee, Min Young; Piplani, Honit; Andres, Allen M; Zhou, Bo; Yeon, Austin; Kim, Minjung; Kim, Hyung L; Kim, Jayoung | Cell cycle (Georgetown, Tex.). | 30526248 | 2018; |
| Gut microbiome structure and metabolic activity in inflammatory bowel disease. | Franzosa, Eric A; Sirota-Madi, Alexandra; Avila-Pacheco, Julian; Fornelos, Nadine; Haiser, Henry J; Reinker, Stefan; Vatanen, Tommi; Hall, A Brantley; Mallick, Himel; McIver, Lauren J; Sauk, Jenny S; Wilson, Robin G; Stevens, Betsy W; Scott, Justin M; Pierce, Kerry; Deik, Amy A; Bullock, Kevin; Imhann, Floris; Porter, Jeffrey A; Zhernakova, Alexandra; Fu, Jingyuan; Weersma, Rinse K; Wijmenga, Cisca; Clish, Clary B; Vlamakis, Hera; Huttenhower, Curtis; Xavier, Ramnik J | Nature microbiology. | 30531976 | 2019 Feb; |
| Dual cationic-anionic profiling of metabolites in a single identified cell in a live Xenopus laevis embryo by microprobe CE-ESI-MS. | Portero, Erika P; Nemes, Peter | The Analyst. | 30542678 | 2019 Jan 28; |
| UCP2 Overexpression Redirects Glucose into Anabolic Metabolic Pathways. | Sreedhar, Annapoorna; Cassell, Teresa; Smith, Parker; Lu, Daiwei; Nam, Hyung W; Lane, Andrew N; Zhao, Yunfeng | Proteomics. | 30556651 | 2019 Feb; |
| Transport-exclusion pharmacology to localize lactate dehydrogenase activity within cells. | Niu, Xiangfeng; Chen, Ying-Jr; Crawford, Peter A; Patti, Gary J | Cancer & metabolism. | 30559963 | 2018; |
| Platelet abnormalities in Huntington's disease. | Denis, Hélèna L; Lamontagne-Proulx, Jérôme; St-Amour, Isabelle; Mason, Sarah L; Rowley, Jesse W; Cloutier, Nathalie; Tremblay, Marie-Ève; Vincent, Antony T; Gould, Peter V; Chouinard, Sylvain; Weyrich, Andrew S; Rondina, Matthew T; Barker, Roger A; Boilar | Journal of neurology, neurosurgery, and psychiatry. | 30567722 | 2019 03; |
| Metabolomics and 16S rRNA sequencing of human colorectal cancers and adjacent mucosa. | Loke, Mun Fai; Chua, Eng Guan; Gan, Han Ming; Thulasi, Kumar; Wanyiri, Jane W; Thevambiga, Iyadorai; Goh, Khean Lee; Wong, Won Fen; Vadivelu, Jamuna | PloS one. | 30576312 | 2018; |
| Kinetic Analysis of Hepatic Metabolism Using Hyperpolarized Dihydroxyacetone. | Kirpich, Alexander; Ragavan, Mukundan; Bankson, James A; McIntyre, Lauren M; Merritt, Matthew E | Journal of chemical information and modeling. | 30602117 | 2019 Jan 28; |
| Structure Annotation of All Mass Spectra in Untargeted Metabolomics. | Bla?enovi?, Ivana; Kind, Tobias; Sa, Michael R; Ji, Jian; Vaniya, Arpana; Wancewicz, Benjamin; Roberts, Bryan S; Torba?inovi?, Hrvoje; Lee, Tack; Mehta, Sajjan S; Showalter, Megan R; Song, Hosook; Kwok, Jessica; Jahn, Dieter; Kim, Jayoung; Fiehn, Oliver | Analytical chemistry. | 30608141 | 2019 02 05; |
| Chronic maternal cortisol excess during late gestation leads to metabolic alterations in the newborn heart. | Walejko, Jacquelyn M; Antolic, Andrew; Koelmel, Jeremy P; Garrett, Timothy J; Edison, Arthur S; Keller-Wood, Maureen | American journal of physiology. Endocrinology and metabolism. | 30620638 | 2019 Mar 01; |
| Innovative technologies for the smart E-Healthcare system. | Kim, Wun-Jae; Kim, Jayoung | Investigative and clinical urology. | 30637354 | 2019 Jan; |
| Exosomes Derived from Human Primed Mesenchymal Stem Cells Induce Mitosis and Potentiate Growth Factor Secretion. | Yuan, Oliver; Lin, Clayton; Wagner, Joseph; Archard, Joehleen A; Deng, Peter; Halmai, Julian; Bauer, Gerhard; Fink, Kyle D; Fury, Brian; Perotti, Nicholas H; Walker, Jon E; Pollock, Kari; Apperson, Michelle; Butters, Janelle; Belafsky, Peter; Farwell, D Gregory; Kuhn, Maggie; Nolta, Jan; Anderson, Johnathon D | Stem cells and development. | 30638129 | 2019 Mar 15; |
| Identification of Unknown Metabolomics Mixture Compounds by Combining NMR, MS, and Cheminformatics. | Leggett, Abigail; Wang, Cheng; Li, Da-Wei; Somogyi, Arpad; Bruschweiler-Li, Lei; Brüschweiler, Rafael | Methods in enzymology. | 30638535 | 2019; |
| Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH. | Gallagher, Tara; Phan, Joann; Oliver, Andrew; Chase, Alexander B; England, Whitney E; Wandro, Stephen; Hendrickson, Clark; Riedel, Stefan F; Whiteson, Katrine | Journal of bacteriology. | 30642989 | 2019 Apr 01; |
| The impact of early-life sub-therapeutic antibiotic treatment (STAT) on excessive weight is robust despite transfer of intestinal microbes. | Schulfer, Anjelique F; Schluter, Jonas; Zhang, Yilong; Brown, Quincy; Pathmasiri, Wimal; McRitchie, Susan; Sumner, Susan; Li, Huilin; Xavier, Joao B; Blaser, Martin J | The ISME journal. | 30651608 | 2019 May; |
| The mitochondrial retrograde signaling regulates Wnt signaling to promote tumorigenesis in colon cancer. | Wen, Yang-An; Xiong, Xiaopeng; Scott, Timothy; Li, Austin T; Wang, Chi; Weiss, Heidi L; Tan, Li; Bradford, Emily; Fan, Teresa W M; Chandel, Navdeep S; Barrett, Terrence A; Gao, Tianyan | Cell death and differentiation. | 30659235 | 2019 Jan 18; |
| Insulin deficiency and intranasal insulin alter brain mitochondrial function: a potential factor for dementia in diabetes. | Ruegsegger, Gregory N; Manjunatha, Shankarappa; Summer, Priska; Gopala, Srinivas; Zabeilski, Piotr; Dasari, Surendra; Vanderboom, Patrick M; Lanza, Ian R; Klaus, Katherine A; Nair, K Sreekumaran | FASEB journal : official publication of the Federation of American Societies for Experimental Biology. | 30676773 | 2019 Mar; |
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| Exposure to recurrent hypoglycemia alters hippocampal metabolism in treated streptozotocin-induced diabetic rats. | Dewan, Neelesh; Shukla, Vibha; Rehni, Ashish K; Koronowski, Kevin B; Klingbeil, Kyle D; Stradecki-Cohan, Holly; Garrett, Timothy J; Rundek, Tatjana; Perez-Pinzon, Miguel A; Dave, Kunjan R | CNS neuroscience & therapeutics. | 31282100 | 2019 Jul 07; |
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| Correlations Between LC-MS/MS-Detected Glycomics and NMR-Detected Metabolomics in Caenorhabditis elegans Development. | Sheikh, M Osman; Tayyari, Fariba; Zhang, Sicong; Judge, Michael T; Weatherly, D Brent; Ponce, Francesca V; Wells, Lance; Edison, Arthur S | Frontiers in molecular biosciences. | 31316996 | 2019; |
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| Arginine and Carnitine Metabolites Are Altered in Diabetic Retinopathy. | Sumarriva, Katherine; Uppal, Karan; Ma, Chunyu; Herren, David J; Wang, Yating; Chocron, Isaac M; Warden, Cassandra; Mitchell, Sabrina L; Burgess, L Goodwin; Goodale, Megan P; Osborn, Melissa P; Ferreira, Allison J; Law, Janice C; Cherney, Edward F; Jones, | Investigative ophthalmology & visual science. | 31323682 | 2019 07 01; |
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| Single-walled carbon nanotubes repress viral-induced defense pathways through oxidative stress. | Chen, Hao; Humes, Sara T; Robinson, Sarah E; Loeb, Julia C; Sabaraya, Indu V; Saleh, Navid B; Khattri, Ram B; Merritt, Matthew E; Martyniuk, Christopher J; Lednicky, John A; Sabo-Attwood, Tara | Nanotoxicology. | 31328592 | 2019 11; |
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| LC-MS-based metabolomics analysis to identify meprin-?-associated changes in kidney tissue from mice with STZ-induced type 1 diabetes and diabetic kidney injury. | Gooding, Jessica; Cao, Lei; Ahmed, Faihaa; Mwiza, Jean-Marie; Fernander, Mizpha; Whitaker, Courtney; Acuff, Zach; McRitchie, Susan; Sumner, Susan; Ongeri, Elimelda Moige | American journal of physiology. Renal physiology. | 31411076 | 2019 10 01; |
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| The Klebsiella pneumoniae citrate synthase gene, gltA, influences site specific fitness during infection. | Vornhagen, Jay; Sun, Yuang; Breen, Paul; Forsyth, Valerie; Zhao, Lili; Mobley, Harry L T; Bachman, Michael A | PLoS pathogens. | 31449551 | 2019 08; |
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| Rapid metabolic shifts occur during the transition between hunger and satiety in Drosophila melanogaster. | Wilinski, Daniel; Winzeler, Jasmine; Duren, William; Persons, Jenna L; Holme, Kristina J; Mosquera, Johan; Khabiri, Morteza; Kinchen, Jason M; Freddolino, Peter L; Karnovsky, Alla; Dus, Monica | Nature communications. | 31492856 | 2019 Sep 06; |
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| Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages. | Krishnan, Smitha; Ding, Yufang; Saeidi, Nima; Choi, Maria; Sridharan, Gautham V; Sherr, David H; Yarmush, Martin L; Alaniz, Robert C; Jayaraman, Arul; Lee, Kyongbum | Cell reports. | 31533048 | 2019 Sep 17; |
| Exercise and metformin counteract altered mitochondrial function in the insulin-resistant brain. | Ruegsegger, Gregory N; Vanderboom, Patrick M; Dasari, Surendra; Klaus, Katherine A; Kabiraj, Parijat; McCarthy, Christina B; Lucchinetti, Claudia F; Nair, K Sreekumaran | JCI insight. | 31534057 | 2019 Sep 19; |
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| Acute Hypercapnia/Ischemia Alters the Esterification of Arachidonic Acid and Docosahexaenoic Acid Epoxide Metabolites in Rat Brain Neutral Lipids. | Otoki, Yurika; Metherel, Adam H; Pedersen, Theresa; Yang, Jun; Hammock, Bruce D; Bazinet, Richard P; Newman, John W; Taha, Ameer Y | Lipids. | 31691988 | 2020 Jan; |
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| AMP-activated protein kinase links acetyl-CoA homeostasis to BRD4 recruitment in acute myeloid leukemia. | Jiang, Yajian; Hu, Tianyuan; Wang, Tao; Shi, Xiangguo; Kitano, Ayumi; Eagle, Kenneth; Hoegenauer, Kevin A; Konopleva, Marina Y; Lin, Charles Y; Young, Nicolas L; Nakada, Daisuke | Blood. | 31697807 | 2019 Dec 12; |
| Ultrahigh-Performance Liquid Chromatography-High-Resolution Mass Spectrometry Metabolomics and Lipidomics Study of Stool from Transgenic Parkinson's Disease Mice Following Immunotherapy. | Gill, Emily L; Koelmel, Jeremy P; Meke, Laurel; Yost, Richard A; Garrett, Timothy J; Okun, Michael S; Flores, Catherine; Vedam-Mai, Vinata | Journal of proteome research. | 31713431 | 2020 01 03; |
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| Mass spectrometry and ion mobility study of poly(ethylene glycol)-based polyurethane oligomers. | Harris, Rachel A; Picache, Jaqueline A; Tomlinson, Ian D; Zlibut, Emanuel; Ellis, Berkley M; May, Jody C; McLean, John A; Hercules, David M | Rapid communications in mass spectrometry : RCM. | 31731326 | 2019 Nov 15; |
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| Dedifferentiation and neuronal repression define familial Alzheimer's disease. | Caldwell, Andrew B; Liu, Qing; Schroth, Gary P; Galasko, Douglas R; Yuan, Shauna H; Wagner, Steven L; Subramaniam, Shankar | Science advances. | 33188013 | 2020 Nov; |
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| Mid-gestation serum lipidomic profile associations with spontaneous preterm birth are influenced by body mass index. | Borkowski, Kamil; Newman, John W; Aghaeepour, Nima; Mayo, Jonathan A; Blazenovi?, Ivana; Fiehn, Oliver; Stevenson, David K; Shaw, Gary M; Carmichael, Suzan L | PloS one. | 33201881 | 2020; |
| Serum trace metal association with response to erythropoiesis stimulating agents in incident and prevalent hemodialysis patients. | Brier, Michael E; Gooding, Jessica R; Harrington, James M; Burgess, Jason P; McRitchie, Susan L; Zhang, Xiaolan; Rovin, Brad H; Klein, Jon B; Himmelfarb, Jonathan; Sumner, Susan J; Merchant, Michael L | Scientific reports. | 33214633 | 2020 11 19; |
| Meconium androgens are correlated with ASD-related phenotypic traits in early childhood in a familial enriched risk cohort. | Terloyeva, Dina; Frey, Alexander J; Park, Bo Y; Kauffman, Elizabeth M; Mathew, Leny; Bostwick, Anna; Varner, Erika L; Lee, Brian K; Croen, Lisa A; Fallin, Margaret D; Hertz-Picciotto, Irva; Newschaffer, Craig J; Lyall, Kristen; Snyder, Nathaniel W | Molecular autism | 33228808 | 2020 11 23 |
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| Plasma lipidomic profiling identifies a novel complex lipid signature associated with ischemic stroke in chronic kidney disease. | Afshinnia, Farsad; Jadoon, Adil; Rajendiran, Thekkelnaycke M; Soni, Tanu; Byun, Jaeman; Michailidis, George; Pennathur, Subramaniam; Michigan Kidney Translational Core CPROBE Investigator Group | Journal of translational science. | 33240530 | 2020 Dec; |
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| Glycine-based treatment ameliorates NAFLD by modulating fatty acid oxidation, glutathione synthesis, and the gut microbiome. | Rom, Oren; Liu, Yuhao; Liu, Zhipeng; Zhao, Ying; Wu, Jianfeng; Ghrayeb, Alia; Villacorta, Luis; Fan, Yanbo; Chang, Lin; Wang, Lu; Liu, Cai; Yang, Dongshan; Song, Jun; Rech, Jason C; Guo, Yanhong; Wang, Huilun; Zhao, Guizhen; Liang, Wenying; Koike, Yui; Lu, Haocheng; Koike, Tomonari; Hayek, Tony; Pennathur, Subramaniam; Xi, Chuanwu; Wen, Bo; Sun, Duxin; Garcia-Barrio, Minerva T; Aviram, Michael; Gottlieb, Eyal; Mor, Inbal; Liu, Wanqing; Zhang, Jifeng; Chen, Y Eugene | Science translational medicine | 33268508 | 2020 12 02 |
| Maternal lipodome across pregnancy is associated with the neonatal DNA methylome. | LaBarre, Jennifer L; McCabe, Carolyn F; Jones, Tamara R; Song, Peter Xk; Domino, Steven E; Treadwell, Marjorie C; Dolinoy, Dana C; Padmanabhan, Vasantha; Burant, Charles F; Goodrich, Jaclyn M | Epigenomics. | 33290095 | 2020 Dec 08; |
| Metabolomic Profile of Personalized Donor Human Milk. | Torrez Lamberti, Monica F; DeBose-Scarlett, Evon; Garret, Timothy; Parker, Leslie Ann; Neu, Josef; Lorca, Graciela L | Molecules (Basel, Switzerland) | 33302441 | 2020 Dec 08 |
| In vivo assessment of glutamine anaplerosis into the TCA cycle in human pre-malignant and malignant clonal plasma cells. | Gonsalves, Wilson I; Jang, Jin Sung; Jessen, Erik; Hitosugi, Taro; Evans, Laura A; Jevremovic, Dragan; Pettersson, Xuan-Mai; Bush, Alexander Graham; Gransee, Jaimee; Anderson, Emilie I; Kumar, Shaji K; Nair, K Sreekumaran | Cancer & metabolism. | 33308307 | 2020 Dec 11; |
| Integrative Analysis of Gene-Specific DNA Methylation and Untargeted Metabolomics Data from the ELEMENT Cohort. | Goodrich, Jaclyn M; Hector, Emily C; Tang, Lu; LaBarre, Jennifer L; Dolinoy, Dana C; Mercado-Garcia, Adriana; Cantoral, Alejandra; Song, Peter Xk; Téllez-Rojo, Martha Maria; Peterson, Karen E | Epigenetics insights | 33354655 | 2020 |
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| Metabolome-wide association study of flavorant vanillin exposure in bronchial epithelial cells reveals disease-related perturbations in metabolism. | Smith, Matthew Ryan; Jarrell, Zachery R; Orr, Michael; Liu, Ken H; Go, Young-Mi; Jones, Dean P | Environment international | 33360165 | 2021 Feb |
| The Glutaminase Inhibitor CB-839 (Telaglenastat) Enhances the Antimelanoma Activity of T-Cell-Mediated Immunotherapies. | Varghese, Sruthy; Pramanik, Snigdha; Williams, Leila J; Hodges, Hannah R; Hudgens, Courtney W; Fischer, Grant M; Luo, Catherine K; Knighton, Barbara; Tan, Lin; Lorenzi, Philip L; Mackinnon, Andrew L; McQuade, Jennifer L; Hailemichael, Yared; Roszik, Jason; Peng, Weiyi; Vashisht Gopal, Y N | Molecular cancer therapeutics | 33361272 | 2020 Dec 23 |
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| Stearoyl-CoA Desaturase-Mediated Monounsaturated Fatty Acid Availability Supports Humoral Immunity. | Zhou, Xian; Zhu, Xingxing; Li, Chaofan; Li, Yanfeng; Ye, Zhenqing; Shapiro, Virginia Smith; Copland 3rd, John A; Hitosugi, Taro; Bernlohr, David A; Sun, Jie; Zeng, Hu | Cell reports | 33406440 | 2021 Jan 05 |
| Exogenous GLP-1 stimulates TCA cycle and suppresses gluconeogenesis and ketogenesis in late-fasted northern elephant seals pups. | Dhillon, Jaapna; Viscarra, Jose A; Newman, John W; Fiehn, Oliver; Crocker, Daniel E; Ortiz, Rudy M | American journal of physiology. Regulatory, integrative and comparative physiology | 33407018 | 2021 04 01 |
| Untargeted Metabolomics: Biochemical Perturbations in Golestan Cohort Study Opium Users Inform Intervention Strategies. | Li, Yuan-Yuan; Ghanbari, Reza; Pathmasiri, Wimal; McRitchie, Susan; Poustchi, Hossein; Shayanrad, Amaneh; Roshandel, Gholamreza; Etemadi, Arash; Pollock, Jonathan D; Malekzadeh, Reza; Sumner, Susan C J | Frontiers in nutrition | 33415121 | 2020 |
| Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Flight, and Quadrupole Mass Spectrometry. | Zhang, Ying; Gao, Bei; Valdiviez, Luis; Zhu, Chao; Gallagher, Tara; Whiteson, Katrine; Fiehn, Oliver | Analytical chemistry | 33434014 | 2021 02 02 |
| Comprehensive Meta-Analysis of COVID-19 Global Metabolomics Datasets. | Pang, Zhiqiang; Zhou, Guangyan; Chong, Jasmine; Xia, Jianguo | Metabolites | 33435351 | 2021 Jan 09 |
| Lipidomics dataset of PTEN deletion-induced optic nerve regeneration mouse model. | Arcuri, Jennifer; Hegarty, Shane; He, Zhigang; Bhattacharya, Sanjoy K | Data in brief | 33457476 | 2021 Feb |
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| An Ion Chromatography-Ultrahigh-Resolution-MS1/Data-Independent High-Resolution MS2 Method for Stable Isotope-Resolved Metabolomics Reconstruction of Central Metabolic Networks. | Sun, Qiushi; Fan, Teresa W-M; Lane, Andrew N; Higashi, Richard M | Analytical chemistry | 33482055 | 2021 02 09 |
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| Ceramide synthase 2 deletion decreases the infectivity of HIV-1. | Barklis, Eric; Alfadhli, Ayna; Kyle, Jennifer E; Bramer, Lisa M; Bloodsworth, Kent J; Barklis, Robin Lid; Leier, Hans C; Petty, R Max; Zelnik, Iris D; Metz, Thomas O; Futerman, Anthony H; Tafesse, Fikadu G | The Journal of biological chemistry | 33515546 | 2021 Jan 27 |
| Association Between Midpregnancy Polyunsaturated Fatty Acid Levels and Offspring Autism Spectrum Disorder in a California Population-Based Case-Control Study. | Lyall, Kristen; Windham, Gayle C; Snyder, Nathaniel W; Kuskovsky, Rostislav; Xu, Peining; Bostwick, Anna; Robinson, Lucy; Newschaffer, Craig J | American journal of epidemiology | 33524118 | 2021 02 01 |
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| Exploring the Impacts of Conformer Selection Methods on Ion Mobility Collision Cross Section Predictions. | Nielson, Felicity F; Colby, Sean M; Thomas, Dennis G; Renslow, Ryan S; Metz, Thomas O | Analytical chemistry | 33606495 | 2021 03 02 |
| Gestational long-term hypoxia induces metabolomic reprogramming and phenotypic transformations in fetal sheep pulmonary arteries. | Leslie, Eric; Lopez, Vanessa; Anti, Nana A O; Alvarez, Rafael; Kafeero, Isaac; Welsh, Donald G; Romero, Monica; Kaushal, Shawn; Johnson, Catherine M; Bosviel, Remy; Blazenovic, Ivana; Song, Rui; Brito, Alex; La Frano, Michael R; Zhang, Lubo; Newman, John W; Fiehn, Oliver; Wilson, Sean M | American journal of physiology. Lung cellular and molecular physiology | 33624555 | 2021 Feb 24 |
| Effects of inflammation and soluble epoxide hydrolase inhibition on oxylipin composition of very low-density lipoproteins in isolated perfused rat livers. | Walker, Rachel E; Savinova, Olga V; Pedersen, Theresa L; Newman, John W; Shearer, Gregory C | Physiological reports | 33625776 | 2021 02 |
| Lipid remodeling in response to methionine stress in MDA-MBA-468 triple-negative breast cancer cells. | Borrego, Stacey L; Fahrmann, Johannes; Hou, Jue; Lin, Da-Wei; Tromberg, Bruce J; Fiehn, Oliver; Kaiser, Peter | Journal of lipid research | 33647277 | 2021 Feb 26 |
| The role of gut microbial community and metabolomic shifts in adaptive resistance of Atlantic killifish (Fundulus heteroclitus) to polycyclic aromatic hydrocarbons. | Redfern, Lauren K; Jayasundara, Nishad; Singleton, David R; Di Giulio, Richard T; Carlson, James; Sumner, Susan J; Gunsch, Claudia K | The Science of the total environment | 33647645 | 2021 Jul 01 |
| Comprehensive metabolomic study of the response of HK-2 cells to hyperglycemic hypoxic diabetic-like milieu. | Valdés, Alberto; Lucio-Cazaña, Francisco J; Castro-Puyana, María; García-Pastor, Coral; Fiehn, Oliver; Marina, María Luisa | Scientific reports | 33658594 | 2021 Mar 03 |
| Plasma lipidomics profile in pregnancy and gestational diabetes risk: a prospective study in a multiracial/ethnic cohort. | Rahman, Mohammad L; Feng, Yen-Chen A; Fiehn, Oliver; Albert, Paul S; Tsai, Michael Y; Zhu, Yeyi; Wang, Xiaobin; Tekola-Ayele, Fasil; Liang, Liming; Zhang, Cuilin | BMJ open diabetes research & care | 33674279 | 2021 03 |
| Blockade of 6-phosphogluconate dehydrogenase generates CD8+ effector T cells with enhanced anti-tumor function. | Daneshmandi, Saeed; Cassel, Teresa; Lin, Penghui; Higashi, Richard M; Wulf, Gerburg M; Boussiotis, Vassiliki A; Fan, Teresa W-M; Seth, Pankaj | Cell reports | 33691103 | 2021 Mar 09 |
| Temporal changes in metabolism late in seed development affect biomass composition. | Kambhampati, Shrikaar; Aznar-Moreno, Jose A; Bailey, Sally R; Arp, Jennifer J; Chu, Kevin L; Bilyeu, Kristin D; Durrett, Timothy P; Allen, Doug K | Plant physiology | 33693938 | 2021 Mar 09 |
| Leucoselect Phytosome Modulates Serum Eicosapentaenoic Acid, Docosahexaenoic Acid, and Prostaglandin E3 in a Phase I Lung Cancer Chemoprevention Study. | Mao, Jenny T; Xue, Bingye; Fan, Sili; Neis, Patricia; Qualls, Clifford; Massie, Larry; Fiehn, Oliver | Cancer prevention research (Philadelphia, Pa.) | 33707173 | 2021 Jun |
| Quick overview of diagnostic kits and smartphone apps for urologists during the COVID-19 pandemic: a narrative review. | Park, Hyusim; Jin, Peng; Jung, Sungyong; Kim, Jayoung | Translational andrology and urology | 33718094 | 2021 Feb |
| Triboelectric Nanogenerator Ion Mobility-Mass Spectrometry for In-Depth Lipid Annotation. | Bouza, Marcos; Li, Yafeng; Wang, Aurelia C; Wang, Zhong Lin; Fernández, Facundo M | Analytical chemistry | 33720699 | 2021 04 06 |
| Branched-chain α-ketoacids are preferentially reaminated and activate protein synthesis in the heart. | Walejko, Jacquelyn M; Christopher, Bridgette A; Crown, Scott B; Zhang, Guo-Fang; Pickar-Oliver, Adrian; Yoneshiro, Takeshi; Foster, Matthew W; Page, Stephani; van Vliet, Stephan; Ilkayeva, Olga; Muehlbauer, Michael J; Carson, Matthew W; Brozinick, Joseph T; Hammond, Craig D; Gimeno, Ruth E; Moseley, M Arthur; Kajimura, Shingo; Gersbach, Charles A; Newgard, Christopher B; White, Phillip J; McGarrah, Robert W | Nature communications | 33723250 | 2021 03 15 |
| metabCombiner: Paired Untargeted LC-HRMS Metabolomics Feature Matching and Concatenation of Disparately Acquired Data Sets. | Habra, Hani; Kachman, Maureen; Bullock, Kevin; Clish, Clary; Evans, Charles R; Karnovsky, Alla | Analytical chemistry | 33724799 | 2021 03 30 |
| Temporal mechanisms of myogenic specification in human induced pluripotent stem cells. | Nayak, P; Colas, A; Mercola, M; Varghese, S; Subramaniam, S | Science advances | 33731358 | 2021 Mar |
| Development of a rational strategy for integration of lactate dehydrogenase A suppression into therapeutic algorithms for head and neck cancer. | Chen, Yunyun; Maniakas, Anastasios; Tan, Lin; Cui, Meng; Le, Xiangdong; Niedzielski, Joshua S; Michel, Keith A; Harlan, Collin J; Lu, Wuhao; Henderson, Ying C; Mohamed, Abdallah S R; Lorenzi, Philip L; Putluri, Nagireddy; Bankson, James A; Sandulache, Vlad C; Lai, Stephen Y | British journal of cancer | 33742144 | 2021 Mar 19 |
| Obesity-Dependent Adipokine Chemerin Suppresses Fatty Acid Oxidation to Confer Ferroptosis Resistance. | Tan, Sze Kiat; Mahmud, Iqbal; Fontanesi, Flavia; Puchowicz, Michelle; Neumann, Chase K A; Griswold, Anthony J; Patel, Rutulkumar; Dispagna, Marco; Ahmed, Hamzah H; Gonzalgo, Mark L; Brown, J Mark; Garrett, Timothy J; Welford, Scott M | Cancer discovery | 33757970 | 2021 Aug |
| From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem. | Khadempour, Lily; Kyle, Jennifer E; Webb-Robertson, Bobbie-Jo M; Nicora, Carrie D; Smith, Francesca B; Smith, Richard D; Lipton, Mary S; Currie, Cameron R; Baker, Erin S; Burnum-Johnson, Kristin E | mSystems | 33758033 | 2021 Mar 23 |
| SARS-CoV-2 infection rewires host cell metabolism and is potentially susceptible to mTORC1 inhibition. | Mullen, Peter J; Garcia Jr, Gustavo; Purkayastha, Arunima; Matulionis, Nedas; Schmid, Ernst W; Momcilovic, Milica; Sen, Chandani; Langerman, Justin; Ramaiah, Arunachalam; Shackelford, David B; Damoiseaux, Robert; French, Samuel W; Plath, Kathrin; Gomperts, Brigitte N; Arumugaswami, Vaithilingaraja; Christofk, Heather R | Nature communications | 33767183 | 2021 03 25 |
| AutoGraph: Autonomous Graph-Based Clustering of Small-Molecule Conformations. | Tanemura, Kiyoto Aramis; Das, Susanta; Merz Jr, Kenneth M | Journal of chemical information and modeling | 33780248 | 2021 04 26 |
| Metabolomic Profiling Reveals Sex Specific Associations with Chronic Obstructive Pulmonary Disease and Emphysema. | Gillenwater, Lucas A; Kechris, Katerina J; Pratte, Katherine A; Reisdorph, Nichole; Petrache, Irina; Labaki, Wassim W; O'Neal, Wanda; Krishnan, Jerry A; Ortega, Victor E; DeMeo, Dawn L; Bowler, Russell P | Metabolites | 33799786 | 2021 Mar 11 |
| NMR Methods for Determining Lipid Turnover via Stable Isotope Resolved Metabolomics. | Lin, Penghui; Dai, Li; Crooks, Daniel R; Neckers, Leonard M; Higashi, Richard M; Fan, Teresa W-M; Lane, Andrew N | Metabolites | 33805301 | 2021 Mar 29 |
| Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos. | Romsdahl, Trevor B; Kambhampati, Shrikaar; Koley, Somnath; Yadav, Umesh P; Alonso, Ana Paula; Allen, Doug K; Chapman, Kent D | Metabolites | 33806402 | 2021 Mar 04 |
| Multiomic Predictors of Short-Term Weight Loss and Clinical Outcomes During a Behavioral-Based Weight Loss Intervention. | Siebert, Janet C; Stanislawski, Maggie A; Zaman, Adnin; Ostendorf, Danielle M; Konigsberg, Iain R; Jambal, Purevsuren; Ir, Diana; Bing, Kristen; Wayland, Liza; Scorsone, Jared J; Lozupone, Catherine A; Görg, Carsten; Frank, Daniel N; Bessesen, Daniel; MacLean, Paul S; Melanson, Edward L; Catenacci, Victoria A; Borengasser, Sarah J | Obesity (Silver Spring, Md.) | 33811477 | 2021 May |
| Oxylipin biosynthesis reinforces cellular senescence and allows detection of senolysis. | Wiley, Christopher D; Sharma, Rishi; Davis, Sonnet S; Lopez-Dominguez, Jose Alberto; Mitchell, Kylie P; Wiley, Samantha; Alimirah, Fatouma; Kim, Dong Eun; Payne, Therese; Rosko, Andrew; Aimontche, Eliezer; Deshpande, Sharvari M; Neri, Francesco; Kuehneman | Cell metabolism | 33811820 | 2021 06 01 |
| Phospholipid Levels at Seroconversion Are Associated With Resolution of Persistent Islet Autoimmunity: The Diabetes Autoimmunity Study in the Young. | Carry, Patrick M; Vanderlinden, Lauren A; Johnson, Randi K; Buckner, Teresa; Fiehn, Oliver; Steck, Andrea K; Kechris, Katerina; Yang, Ivana; Fingerlin, Tasha E; Rewers, Marian; Norris, Jill M | Diabetes | 33863802 | 2021 Apr 16 |
| Correction to "Chespa: Streamlining Expansive Chemical Space Evaluation of Molecular Sets". | Nuñez, Jamie R; Mcgrady, Monee; Yesiltepe, Yasemin; Renslow, Ryan S; Metz, Thomas O | Journal of chemical information and modeling | 33871993 | 2021 Apr 19 |
| NMR Analysis of Carboxylate Isotopomers of 13C-Metabolites by Chemoselective Derivatization with 15N-Cholamine. | Vicente-Muñoz, Sara; Lin, Penghui; Fan, Teresa W-M; Lane, Andrew N | Analytical chemistry | 33880916 | 2021 05 04 |
| The oxylipin profile is associated with development of type 1 diabetes: the Diabetes Autoimmunity Study in the Young (DAISY). | Buckner, Teresa; Vanderlinden, Lauren A; DeFelice, Brian C; Carry, Patrick M; Kechris, Katerina; Dong, Fran; Fiehn, Oliver; Frohnert, Brigitte I; Clare-Salzler, Michael; Rewers, Marian; Norris, Jill M | Diabetologia | 33893822 | 2021 Aug |
| HIF-2α activation potentiates oxidative cell death in colorectal cancers by increasing cellular iron. | Singhal, Rashi; Mitta, Sreedhar R; Das, Nupur K; Kerk, Samuel A; Sajjakulnukit, Peter; Solanki, Sumeet; Andren, Anthony; Kumar, Roshan; Olive, Kenneth P; Banerjee, Ruma; Lyssiotis, Costas A; Shah, Yatrik M | The Journal of clinical investigation | 33914705 | 2021 Jun 15 |
| The deacylase SIRT5 supports melanoma viability by influencing chromatin dynamics. | Giblin, William; Bringman-Rodenbarger, Lauren; Guo, Angela H; Kumar, Surinder; Monovich, Alexander C; Mostafa, Ahmed M; Skinner, Mary E; Azar, Michelle; Mady, Ahmed Sa; Chung, Carolina H; Kadambi, Namrata; Melong, Keith-Allen; Lee, Ho-Joon; Zhang, Li; Sajjakulnukit, Peter; Trefely, Sophie; Varner, Erika L; Iyer, Sowmya; Wang, Min; Wilmott, James S; Soyer, H Peter; Sturm, Richard A; Pritchard, Antonia L; Andea, Aleodor A; Scolyer, Richard A; Stark, Mitchell S; Scott, David A; Fullen, Douglas R; Bosenberg, Marcus W; Chandrasekaran, Sriram; Nikolovska-Coleska, Zaneta; Verhaegen, Monique E; Snyder, Nathaniel W; Rivera, Miguel N; Osterman, Andrei L; Lyssiotis, Costas A; Lombard, David B | The Journal of clinical investigation | 33945506 | 2021 Jun 15 |
| Antigen-encapsulating host extracellular vesicles derived from Salmonella-infected cells stimulate pathogen-specific Th1-type responses in vivo. | Hui, Winnie W; Emerson, Lisa E; Clapp, Beata; Sheppe, Austin E; Sharma, Jatin; Del Castillo, Johanna; Ou, Mark; Maegawa, Gustavo H B; Hoffman, Carol; Larkin Iii, Joseph; Pascual, David W; Edelmann, Mariola J | PLoS pathogens | 33956909 | 2021 May |
| Plasma Amino Acids and Risk of Impaired Lower-Extremity Function and Role of Dietary Intake: A Nested Case-Control Study in Older Adults. | Caballero, Francisco Félix; Struijk, Ellen A; Buño, Antonio; Vega-Cabello, Verónica; Rodríguez-Artalejo, Fernando; Lopez-Garcia, Esther | Gerontology | 33965943 | 2022 |
| Cruciferous vegetables (Brassica oleracea) confer cytoprotective effects in Drosophila intestines. | Lyles, James T; Luo, Liping; Liu, Ken; Jones, Dean P; Jones, Rheinallt M; Quave, Cassandra L | Gut microbes | 33966605 | 2021 Jan-Dec |
| Quantum Chemistry Calculations for Metabolomics. | Borges, Ricardo M; Colby, Sean M; Das, Susanta; Edison, Arthur S; Fiehn, Oliver; Kind, Tobias; Lee, Jesi; Merrill, Amy T; Merz Jr, Kenneth M; Metz, Thomas O; Nunez, Jamie R; Tantillo, Dean J; Wang, Lee-Ping; Wang, Shunyang; Renslow, Ryan S | Chemical reviews | 33979149 | 2021 May 26 |
| The molecular and metabolic program by which white adipocytes adapt to cool physiologic temperatures. | Mori, Hiroyuki; Dugan, Colleen E; Nishii, Akira; Benchamana, Ameena; Li, Ziru; Cadenhead 4th, Thomas S; Das, Arun K; Evans, Charles R; Overmyer, Katherine A; Romanelli, Steven M; Peterson, Sydney K; Bagchi, Devika P; Corsa, Callie A; Hardij, Julie; Learman, Brian S; El Azzouny, Mahmoud; Coon, Joshua J; Inoki, Ken; MacDougald, Ormond A | PLoS biology | 33979328 | 2021 May |
| Effect of Patent Foramen Ovale Closure After Stroke on Circulatory Biomarkers. | Deng, Wenjun; McMullin, David; Inglessis-Azuaje, Ignacio; Locascio, Joseph J; Palacios, Igor F; Buonanno, Ferdinando S; Lo, Eng H; Ning, MingMing | Neurology | 33986139 | 2021 07 13 |
| Plasma Metabolomic Signatures of Chronic Obstructive Pulmonary Disease and the Impact of Genetic Variants on Phenotype-Driven Modules. | Gillenwater, Lucas A; Pratte, Katherine A; Hobbs, Brian D; Cho, Michael H; Zhuang, Yonghua; Halper-Stromberg, Eitan; Cruickshank-Quinn, Charmion; Reisdorph, Nichole; Petrache, Irina; Labaki, Wassim W; O'Neal, Wanda K; Ortega, Victor E; Jones, Dean P; Uppal, Karan; Jacobson, Sean; Michelotti, Gregory; Wendt, Christine H; Kechris, Katerina J; Bowler, Russell P | Network and systems medicine | 33987620 | 2020 Dec 01 |
| Isotope tracing in adult zebrafish reveals alanine cycling between melanoma and liver. | Naser, Fuad J; Jackstadt, Madelyn M; Fowle-Grider, Ronald; Spalding, Jonathan L; Cho, Kevin; Stancliffe, Ethan; Doonan, Steven R; Kramer, Eva T; Yao, Lijun; Krasnick, Bradley; Ding, Li; Fields, Ryan C; Kaufman, Charles K; Shriver, Leah P; Johnson, Stephen L; Patti, Gary J | Cell metabolism | 33989520 | 2021 07 06 |
| Metabolic Changes Are Associated with Melphalan Resistance in Multiple Myeloma. | Koomen, David C; Meads, Mark B; Magaletti, Dario M; Guingab-Cagmat, Joy D; Oliveira, Paula S; Fang, Bin; Liu, Min; Welsh, Eric A; Meke, Laurel E; Jiang, Zhijie; Hampton, Oliver A; Tungesvik, Alexandre; De Avila, Gabriel; Alugubelli, Raghunandan Reddy; Nishihori, Taiga; Silva, Ariosto S; Eschrich, Steven A; Garrett, Timothy J; Koomen, John M; Shain, Kenneth H | Journal of proteome research | 34014671 | 2021 06 04 |
| Genetic architecture of root and shoot ionomes in rice (Oryza sativa L.). | Cobb, Joshua N; Chen, Chen; Shi, Yuxin; Maron, Lyza G; Liu, Danni; Rutzke, Mike; Greenberg, Anthony; Craft, Eric; Shaff, Jon; Paul, Edyth; Akther, Kazi; Wang, Shaokui; Kochian, Leon V; Zhang, Dabao; Zhang, Min; McCouch, Susan R | TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik | 34018019 | 2021 Aug |
| MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights. | Pang, Zhiqiang; Chong, Jasmine; Zhou, Guangyan; de Lima Morais, David Anderson; Chang, Le; Barrette, Michel; Gauthier, Carol; Jacques, Pierre-Étienne; Li, Shuzhao; Xia, Jianguo | Nucleic acids research | 34019663 | 2021 Jul 02 |
| Culture and Assay of Large-Scale Mixed-Stage Caenorhabditis elegans Populations. | Shaver, Amanda O; Gouveia, Goncalo J; Kirby, Pamela S; Andersen, Erik C; Edison, Arthur S | Journal of visualized experiments : JoVE | 34028439 | 2021 May 05 |
| CyProduct: A Software Tool for Accurately Predicting the Byproducts of Human Cytochrome P450 Metabolism. | Tian, Siyang; Cao, Xuan; Greiner, Russell; Li, Carin; Guo, AnChi; Wishart, David S | Journal of chemical information and modeling | 34038112 | 2021 06 28 |
| Genetic deficiency or pharmacological inhibition of soluble epoxide hydrolase ameliorates high fat diet-induced pancreatic β-cell dysfunction and loss. | Koike, Shinichiro; Hsu, Ming-Fo; Bettaieb, Ahmed; Chu, Bryan; Matsumoto, Naoki; Morisseau, Christophe; Havel, Peter J; Huising, Mark O; Hammock, Bruce D; Haj, Fawaz G | Free radical biology & medicine | 34038767 | 2021 08 20 |
| Medium-Chain Acyl-CoA Dehydrogenase Protects Mitochondria from Lipid Peroxidation in Glioblastoma. | Puca, Francesca; Yu, Fei; Bartolacci, Caterina; Pettazzoni, Piergiorgio; Carugo, Alessandro; Huang-Hobbs, Emmet; Liu, Jintan; Zanca, Ciro; Carbone, Federica; Del Poggetto, Edoardo; Gumin, Joy; Dasgupta, Pushan; Seth, Sahil; Srinivasan, Sanjana; Lang, Frederick F; Sulman, Erik P; Lorenzi, Philip L; Tan, Lin; Shan, Mengrou; Tolstyka, Zachary P; Kachman, Maureen; Zhang, Li; Gao, Sisi; Deem, Angela K; Genovese, Giannicola; Scaglioni, Pier Paolo; Lyssiotis, Costas A; Viale, Andrea; Draetta, Giulio F | Cancer discovery | 34039636 | 2021 11 |
| Optimization of Metabolite Extraction Protocols for the Identification and Profiling of Small Molecule Metabolites from Planktonic and Biofilm Pseudomonas aeruginosa Cultures. | Fuchs, Amanda; Tripet, Brian P; Ammons, Mary Cloud B; Copié, Valérie | Current Metabolomics | 34046294 | 2016 |
| In vivo2H/13C flux analysis in metabolism research. | Bednarski, Tomasz K; Rahim, Mohsin; Young, Jamey D | Current opinion in biotechnology | 34048994 | 2021 May 25 |
| Atg32-dependent mitophagy sustains spermidine and nitric oxide required for heat-stress tolerance in Saccharomycescerevisiae. | Kaur, Jasvinder; Goldsmith, Juliet; Tankka, Alexandra; Bustamante Eguiguren, Sofía; Gimenez, Alfredo A; Vick, Lance; Debnath, Jayanta; Vlahakis, Ariadne | Journal of cell science | 34096604 | 2021 06 01 |
| The aryl hydrocarbon receptor activates ceramide biosynthesis in mice contributing to hepatic lipogenesis. | Liu, Qing; Zhang, Limin; Allman, Erik L; Hubbard, Troy D; Murray, Iain A; Hao, Fuhua; Tian, Yuan; Gui, Wei; Nichols, Robert G; Smith, Philip B; Anitha, Mallappa; Perdew, Gary H; Patterson, Andrew D | Toxicology | 34097992 | 2021 06 30 |
| Intraspecific variation in polar and nonpolar metabolite profiles of a threatened Caribbean coral. | Henry, Joseph A; Khattri, Ram B; Guingab-Cagmat, Joy; Merritt, Matthew E; Garrett, Timothy J; Patterson, Joshua T; Lohr, Kathryn E | Metabolomics : Official journal of the Metabolomic Society | 34143280 | 2021 06 18 |
| AutoCCS: Automated collision cross section calculation software for ion mobility spectrometry-mass spectrometry. | Lee, Joon-Yong; Bilbao, Aivett; Conant, Christopher R; Bloodsworth, Kent J; Orton, Daniel J; Zhou, Mowei; Wilson, Jesse W; Zheng, Xueyun; Webb, Ian K; Li, Ailin; Hixson, Kim K; Fjeldsted, John C; Ibrahim, Yehia M; Payne, Samuel H; Jansson, Christer; Smith, Richard D; Metz, Thomas O | Bioinformatics (Oxford, England) | 34145874 | 2021 Jun 18 |
| Hepcidin sequesters iron to sustain nucleotide metabolism and mitochondrial function in colorectal cancer epithelial cells. | Schwartz, Andrew J; Goyert, Joshua W; Solanki, Sumeet; Kerk, Samuel A; Chen, Brandon; Castillo, Cristina; Hsu, Peggy P; Do, Brian T; Singhal, Rashi; Dame, Michael K; Lee, Ho-Joon; Spence, Jason R; Lakhal-Littleton, Samira; Heiden, Matthew G Vander; Lyssio | Nature metabolism | 34155415 | 2021 07 |
| Multitissue 2H/13C flux analysis reveals reciprocal upregulation of renal gluconeogenesis in hepatic PEPCK-C-knockout mice. | Rahim, Mohsin; Hasenour, Clinton M; Bednarski, Tomasz K; Hughey, Curtis C; Wasserman, David H; Young, Jamey D | JCI insight | 34156032 | 2021 Jun 22 |
| Long-Term Metabolomics Reference Material. | Gouveia, Goncalo J; Shaver, Amanda O; Garcia, Brianna M; Morse, Alison M; Andersen, Erik C; Edison, Arthur S; McIntyre, Lauren M | Analytical chemistry | 34156835 | 2021 Jul 06 |
| Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment. | Schmid, Robin; Petras, Daniel; Nothias, Louis-Félix; Wang, Mingxun; Aron, Allegra T; Jagels, Annika; Tsugawa, Hiroshi; Rainer, Johannes; Garcia-Aloy, Mar; Dührkop, Kai; Korf, Ansgar; Pluskal, Tomáš; Kameník, Zdeněk; Jarmusch, Alan K; Caraballo-Rodríguez, Andrés Mauricio; Weldon, Kelly C; Nothias-Esposito, Melissa; Aksenov, Alexander A; Bauermeister, Anelize; Albarracin Orio, Andrea; Grundmann, Carlismari O; Vargas, Fernando; Koester, Irina; Gauglitz, Julia M; Gentry, Emily C; Hövelmann, Yannick; Kalinina, Svetlana A; Pendergraft, Matthew A; Panitchpakdi, Morgan; Tehan, Richard; Le Gouellec, Audrey; Aleti, Gajender; Mannochio Russo, Helena; Arndt, Birgit; Hübner, Florian; Hayen, Heiko; Zhi, Hui; Raffatellu, Manuela; Prather, Kimberly A; Aluwihare, Lihini I; Böcker, Sebastian; McPhail, Kerry L; Humpf, Hans-Ulrich; Karst, Uwe; Dorrestein, Pieter C | Nature communications | 34158495 | 2021 06 22 |
| The association of in utero tobacco smoke exposure, quantified by serum cotinine, and Autism Spectrum Disorder. | Berger, Kimberly; Pearl, Michelle; Kharrazi, Marty; Li, Ying; DeGuzman, Josephine; She, Jianwen; Behniwal, Paramjit; Lyall, Kristen; Windham, Gayle | Autism research : official journal of the International Society for Autism Research | 34165248 | 2021 09 |
| Circulating extracellular vesicles are a biomarker for NAFLD resolution and response to weight loss surgery. | Nakao, Yasuhiko; Amrollahi, Pouya; Parthasarathy, Gopanandan; Mauer, Amy S; Sehrawat, Tejasav S; Vanderboom, Patrick; Nair, K Sreekumaran; Nakao, Kazuhiko; Allen, Alina M; Hu, Tony Y; Malhi, Harmeet | Nanomedicine : nanotechnology, biology, and medicine | 34174416 | 2021 08 |
| Ethnicity-specific alterations of plasma and hepatic lipidomic profiles are related to high NAFLD rate and severity in Hispanic Americans, a pilot study. | Mazi, Tagreed A; Borkowski, Kamil; Newman, John W; Fiehn, Oliver; Bowlus, Christopher L; Sarkar, Souvik; Matsukuma, Karen; Ali, Mohamed R; Kieffer, Dorothy A; Wan, Yu-Jui Y; Stanhope, Kimber L; Havel, Peter J; Medici, Valentina | Free radical biology & medicine | 34182070 | 2021 08 20 |
| Hexosamine biosynthetic pathway and O-GlcNAc-processing enzymes regulate daily rhythms in protein O-GlcNAcylation. | Liu, Xianhui; Blaženović, Ivana; Contreras, Adam J; Pham, Thu M; Tabuloc, Christine A; Li, Ying H; Ji, Jian; Fiehn, Oliver; Chiu, Joanna C | Nature communications | 34234137 | 2021 Jul 07 |
| Thioredoxin reductase is a major regulator of metabolism in leukemia cells. | Karunanithi, Sheelarani; Liu, Ruifu; Hou, Yongchun; Gonzalez, Giancarlo; Oldford, Natasha; Roe, Anne Jessica; Idipilly, Nethrie; Gupta, Kalpana; Amara, Chandra Sekhar; Putluri, Satwikreddy; Lee, Grace Kyueun; Valentin-Goyco, Juan; Stetson, Lindsay; Moreto | Oncogene | 34239044 | 2021 Aug |
| Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. | Alseekh, Saleh; Aharoni, Asaph; Brotman, Yariv; Contrepois, Kévin; D'Auria, John; Ewald, Jan; C Ewald, Jennifer; Fraser, Paul D; Giavalisco, Patrick; Hall, Robert D; Heinemann, Matthias; Link, Hannes; Luo, Jie; Neumann, Steffen; Nielsen, Jens; Perez de Souza, Leonardo; Saito, Kazuki; Sauer, Uwe; Schroeder, Frank C; Schuster, Stefan; Siuzdak, Gary; Skirycz, Aleksandra; Sumner, Lloyd W; Snyder, Michael P; Tang, Huiru; Tohge, Takayuki; Wang, Yulan; Wen, Weiwei; Wu, Si; Xu, Guowang; Zamboni, Nicola; Fernie, Alisdair R | Nature methods | 34239102 | 2021 07 |
| DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution. | Stancliffe, Ethan; Schwaiger-Haber, Michaela; Sindelar, Miriam; Patti, Gary J | Nature methods | 34239103 | 2021 Jul |
| Compound NSC84167 selectively targets NRF2-activated pancreatic cancer by inhibiting asparagine synthesis pathway. | Dai, Bingbing; Augustine, Jithesh J; Kang, Ya'an; Roife, David; Li, Xinqun; Deng, Jenying; Tan, Lin; Rusling, Leona A; Weinstein, John N; Lorenzi, Philip L; Kim, Michael P; Fleming, Jason B | Cell death & disease | 34247201 | 2021 07 10 |
| Advantages of Studying the Metabolome in Response to Mixed-Macronutrient Challenges and Suggestions for Future Research Designs. | LaBarre, Jennifer L; Singer, Kanakadurga; Burant, Charles F | The Journal of nutrition | 34255076 | 2021 10 01 |
| Single Quadrupole Multiple Fragment Ion Monitoring Quantitative Mass Spectrometry. | Xue, Jingchuan; Derks, Rico J E; Webb, Bill; Billings, Elizabeth M; Aisporna, Aries; Giera, Martin; Siuzdak, Gary | Analytical chemistry | 34313111 | 2021 08 10 |
| Torsin and NEP1R1-CTDNEP1 phosphatase affect interphase nuclear pore complex insertion by lipid-dependent and lipid-independent mechanisms. | Jacquemyn, Julie; Foroozandeh, Joyce; Vints, Katlijn; Swerts, Jef; Verstreken, Patrik; Gounko, Natalia V; Gallego, Sandra F; Goodchild, Rose | The EMBO journal | 34313336 | 2021 09 01 |
| Multidimensional Separations of Intact Phase II Steroid Metabolites Utilizing LC-Ion Mobility-HRMS. | Davis Jr, Don E; Leaptrot, Katrina L; Koomen, David C; May, Jody C; Cavalcanti, Gustavo de A; Padilha, Monica C; Pereira, Henrique M G; McLean, John A | Analytical chemistry | 34319704 | 2021 08 10 |
| Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence. | Molina-Santiago, Carlos; Vela-Corcía, David; Petras, Daniel; Díaz-Martínez, Luis; Pérez-Lorente, Alicia Isabel; Sopeña-Torres, Sara; Pearson, John; Caraballo-Rodríguez, Andrés Mauricio; Dorrestein, Pieter C; de Vicente, Antonio; Romero, Diego | Cell reports | 34320359 | 2021 Jul 27 |
| A Metabolomic Signature of Glucagon Action in Healthy Individuals With Overweight/Obesity. | Vega, Rick B; Whytock, Katie L; Gassenhuber, Johan; Goebel, Britta; Tillner, Joachim; Agueusop, Inoncent; Truax, Agnieszka D; Yu, Gongxin; Carnero, Elvis; Kapoor, Nidhi; Gardell, Stephen; Sparks, Lauren M; Smith, Steven R | Journal of the Endocrine Society | 34337278 | 2021 Sep 01 |
| Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden. | Caraballo-Rodríguez, Andrés Mauricio; Puckett, Sara P; Kyle, Kathleen E; Petras, Daniel; da Silva, Ricardo; Nothias, Louis-Félix; Ernst, Madeleine; van der Hooft, Justin J J; Tripathi, Anupriya; Wang, Mingxun; Balunas, Marcy J; Klassen, Jonathan L; Dorrestein, Pieter C | mSystems | 34342533 | 2021 Aug 31 |
| Oxylipin responses to fasting and insulin infusion in a large mammalian model of fasting-induced insulin resistance, the northern elephant seal. | Wright, Dana N; Katundu, Kondwani G H; Viscarra, Jose A; Crocker, Daniel E; Newman, John W; La Frano, Michael R; Ortiz, Rudy M | American journal of physiology. Regulatory, integrative and comparative physiology | 34346724 | 2021 10 01 |
| A size-exclusion-based approach for purifying extracellular vesicles from human plasma. | Vanderboom, Patrick M; Dasari, Surendra; Ruegsegger, Gregory N; Pataky, Mark W; Lucien, Fabrice; Heppelmann, Carrie Jo; Lanza, Ian R; Nair, K Sreekumaran | Cell reports methods | 34355211 | 2021 Jul 26 |
| Hyperpolarized Dihydroxyacetone Is a Sensitive Probe of Hepatic Gluconeogenic State. | Ragavan, Mukundan; McLeod, Marc A; Giacalone, Anthony G; Merritt, Matthew E | Metabolites | 34357335 | 2021 Jul 05 |
| Intestinal-derived FGF15 protects against deleterious effects of vertical sleeve gastrectomy in mice. | Bozadjieva-Kramer, Nadejda; Shin, Jae Hoon; Shao, Yikai; Gutierrez-Aguilar, Ruth; Li, Ziru; Heppner, Kristy M; Chiang, Samuel; Vargo, Sara G; Granger, Katrina; Sandoval, Darleen A; MacDougald, Ormond A; Seeley, Randy J | Nature communications | 34362888 | 2021 08 06 |
| Porphyromonas somerae Invasion of Endometrial Cancer Cells. | Crooks, Taylor A; Madison, Joseph D; Walsh, Dana M; Herbert, William G; Jeraldo, Patricio R; Chia, Nicholas; Cliby, William A; Kaufmann, Scott H; Walther-Antonio, Marina R S | Frontiers in microbiology | 34367083 | 2021 |
| Host lipidome and tuberculosis treatment failure. | Shivakoti, Rupak; Newman, John W; Hanna, Luke Elizabeth; Queiroz, Artur T L; Borkowski, Kamil; Gupte, Akshay N; Paradkar, Mandar; Satyamurthi, Pattabiraman; Kulkarni, Vandana; Selva, Murugesh; Pradhan, Neeta; Shivakumar, Shri Vijay Bala Yogendra; Natarajan, Saravanan; Karunaianantham, Ramesh; Gupte, Nikhil; Thiruvengadam, Kannan; Fiehn, Oliver; Bharadwaj, Renu; Kagal, Anju; Gaikwad, Sanjay; Sangle, Shashikala; Golub, Jonathan E; Andrade, Bruno B; Mave, Vidya; Gupta, Amita; Padmapriyadarsini, Chandrasekaran | The European respiratory journal | 34375300 | 2022 01 |
| A metabolomic aging clock using human CSF. | Hwangbo, Nathan; Zhang, Xinyu; Raftery, Daniel; Gu, Haiwei; Hu, Shu-Ching; Montine, Thomas J; Quinn, Joseph F; Chung, Kathryn A; Hiller, Amie L; Wang, Dongfang; Fei, Qiang; Bettcher, Lisa; Zabetian, Cyrus P; Peskind, Elaine; Li, Gail; Promislow, Daniel E L; Franks, Alexander | The journals of gerontology. Series A, Biological sciences and medical sciences | 34382643 | 2021 Aug 12 |
| Alendronate-induced Perturbation of the Bone Proteome and Microenvironmental Pathophysiology. | Kim, Jayoung; Yeon, Austin; Parker, Sarah J; Shahid, Muhammad; Thiombane, Aissatou; Cho, Eunho; You, Sungyong; Emam, Hany; Kim, Do-Gyoon; Kim, Minjung | International journal of medical sciences | 34400895 | 2021 |
| CFM-ID 4.0: More Accurate ESI-MS/MS Spectral Prediction and Compound Identification. | Wang, Fei; Liigand, Jaanus; Tian, Siyang; Arndt, David; Greiner, Russell; Wishart, David S | Analytical chemistry | 34403256 | 2021 08 31 |
| Metabolic preconditioning in CD4+ T cells restores inducible immune tolerance in lupus-prone mice. | Wilson, Christopher S; Stocks, Blair T; Hoopes, Emilee M; Rhoads, Jillian P; McNew, Kelsey L; Major, Amy S; Moore, Daniel J | JCI insight | 34403367 | 2021 Oct 08 |
| Mass Spectrometry-Based Detection of Beta Lactam Hydrolysis Enables Rapid Detection of Beta Lactamase Mediated Antibiotic Resistance. | Suhandynata, Raymond T; Lund, Kyle; Caraballo-Rodríguez, Andrés M; Reed, Sharon L; Dorrestein, Pieter C; Fitzgerald, Robert L; Bevins, Nicholas J | Laboratory medicine | 34403464 | 2022 Mar 07 |
| Innate immune activation by checkpoint inhibition in human patient-derived lung cancer tissues. | Fan, Teresa Wm; Higashi, Richard M; Song, Huan; Daneshmandi, Saeed; Mahan, Angela L; Purdom, Matthew S; Bocklage, Therese J; Pittman, Thomas A; He, Daheng; Wang, Chi; Lane, Andrew N | eLife | 34406120 | 2021 08 18 |
| Loss of Stearoyl-CoA desaturase 1 leads to cardiac dysfunction and lipotoxicity. | Tuthill Ii, Bryon F; Quaglia, Christopher J; O'Hara, Eileen; Musselman, Laura Palanker | The Journal of experimental biology | 34423827 | 2021 09 15 |
| Untargeted proteomics reveals upregulation of stress response pathways during CHO-based monoclonal antibody manufacturing process leading to disulfide bond reduction. | Park, Seo-Young; Egan, Susan; Cura, Anthony J; Aron, Kathryn L; Xu, Xuankuo; Zheng, Mengyuan; Borys, Michael; Ghose, Sanchayita; Li, Zhengjian; Lee, Kyongbum | mAbs | 34424810 | 2021 Jan-Dec |
| Deletion of Glut1 in early postnatal cartilage reprograms chondrocytes toward enhanced glutamine oxidation. | Wang, Cuicui; Ying, Jun; Niu, Xiangfeng; Li, Xiaofei; Patti, Gary J; Shen, Jie; O'Keefe, Regis J | Bone research | 34426569 | 2021 Aug 23 |
| Utilizing a Biology-Driven Approach to Map the Exposome in Health and Disease: An Essential Investment to Drive the Next Generation of Environmental Discovery. | Chung, Ming Kei; Rappaport, Stephen M; Wheelock, Craig E; Nguyen, Vy Kim; van der Meer, Thomas P; Miller, Gary W; Vermeulen, Roel; Patel, Chirag J | Environmental health perspectives | 34435882 | 2021 08 |
| A Mediation Approach to Discovering Causal Relationships between the Metabolome and DNA Methylation in Type 1 Diabetes. | Vigers, Tim; Vanderlinden, Lauren A; Johnson, Randi K; Carry, Patrick M; Yang, Ivana; DeFelice, Brian C; Kaizer, Alexander M; Pyle, Laura; Rewers, Marian; Fiehn, Oliver; Norris, Jill M; Kechris, Katerina | Metabolites | 34436483 | 2021 Aug 14 |
| Measuring NQO1 Bioactivation Using [2H7]Glucose. | Mahar, Rohit; Chang, Mario C; Merritt, Matthew E | Cancers | 34439319 | 2021 Aug 19 |
| ADAP-KDB: A Spectral Knowledgebase for Tracking and Prioritizing Unknown GC-MS Spectra in the NIH's Metabolomics Data Repository. | Smirnov, Aleksandr; Liao, Yunfei; Fahy, Eoin; Subramaniam, Shankar; Du, Xiuxia | Analytical chemistry | 34455770 | 2021 09 14 |
| Reducing subspace models for large-scale covariance regression. | Franks, Alexander M | Biometrics | 34458980 | 2022 Dec |
| Comparison of High-Resolution Fourier Transform Mass Spectrometry Platforms for Putative Metabolite Annotation. | Huang, Danning; Bouza, Marcos; Gaul, David A; Leach 3rd, Franklin E; Amster, I Jonathan; Schroeder, Frank C; Edison, Arthur S; Fernández, Facundo M | Analytical chemistry | 34460220 | 2021 09 14 |
| Combinatorial Assembly of Modular Glucosides via Carboxylesterases Regulates C. elegans Starvation Survival. | Wrobel, Chester J J; Yu, Jingfang; Rodrigues, Pedro R; Ludewig, Andreas H; Curtis, Brian J; Cohen, Sarah M; Fox, Bennett W; O'Donnell, Michael P; Sternberg, Paul W; Schroeder, Frank C | Journal of the American Chemical Society | 34460264 | 2021 Sep 15 |
| In vivo deep network tracing reveals phosphofructokinase-mediated coordination of biosynthetic pathway activity in the myocardium. | Fulghum, Kyle L; Audam, Timothy N; Lorkiewicz, Pawel K; Zheng, Yuting; Merchant, Michael; Cummins, Timothy D; Dean, William L; Cassel, Teresa A; Fan, Teresa W M; Hill, Bradford G | Journal of molecular and cellular cardiology | 34487754 | 2022 01 |
| Reproducibility of mass spectrometry based metabolomics data. | Ghosh, Tusharkanti; Philtron, Daisy; Zhang, Weiming; Kechris, Katerina; Ghosh, Debashis | BMC bioinformatics | 34493210 | 2021 Sep 07 |
| Metabolomics of Lung Microdissections Reveals Region- and Sex-Specific Metabolic Effects of Acute Naphthalene Exposure in Mice. | Stevens, Nathanial C; Edwards, Patricia C; Tran, Lisa M; Ding, Xinxin; Van Winkle, Laura S; Fiehn, Oliver | Toxicological sciences : an official journal of the Society of Toxicology | 34498071 | 2021 Nov 24 |
| Metabolomics as a Truly Translational Tool for Precision Medicine. | Schmidt, Julian C; Dougherty, Bonnie V; Beger, Richard D; Jones, Dean P; Schmidt, Michael A; Mattes, William B | International journal of toxicology | 34514887 | 2021 10 |
| Large scale enzyme based xenobiotic identification for exposomics. | Liu, Ken H; Lee, Choon M; Singer, Grant; Bais, Preeti; Castellanos, Francisco; Woodworth, Michael H; Ziegler, Thomas R; Kraft, Colleen S; Miller, Gary W; Li, Shuzhao; Go, Young-Mi; Morgan, Edward T; Jones, Dean P | Nature communications | 34521839 | 2021 09 14 |
| Untargeted metabolomics in primary murine bone marrow stromal cells reveals distinct profile throughout osteoblast differentiation. | Misra, Biswapriya B; Jayapalan, Shobana; Richards, Alison K; Helderman, Ron C M; Rendina-Ruedy, Elizabeth | Metabolomics : Official journal of the Metabolomic Society | 34537901 | 2021 09 18 |
| The maternal blood lipidome is indicative of the pathogenesis of severe preeclampsia. | He, Bing; Liu, Yu; Maurya, Mano R; Benny, Paula; Lassiter, Cameron; Li, Hui; Subramaniam, Shankar; Garmire, Lana X | Journal of lipid research | 34547287 | 2021 Sep 20 |
| A scalable workflow to characterize the human exposome. | Hu, Xin; Walker, Douglas I; Liang, Yongliang; Smith, Matthew Ryan; Orr, Michael L; Juran, Brian D; Ma, Chunyu; Uppal, Karan; Koval, Michael; Martin, Greg S; Neujahr, David C; Marsit, Carmen J; Go, Young-Mi; Pennell, Kurt D; Miller, Gary W; Lazaridis, Kons | Nature communications | 34552080 | 2021 09 22 |
| Targeting MYC-enhanced glycolysis for the treatment of small cell lung cancer. | Cargill, Kasey R; Stewart, C Allison; Park, Elizabeth M; Ramkumar, Kavya; Gay, Carl M; Cardnell, Robert J; Wang, Qi; Diao, Lixia; Shen, Li; Fan, You-Hong; Chan, Wai Kin; Lorenzi, Philip L; Oliver, Trudy G; Wang, Jing; Byers, Lauren A | Cancer & metabolism | 34556188 | 2021 Sep 23 |
| Rapid analysis of S-adenosylmethionine (SAM) and S-adenosylhomocysteine (SAH) isotopologues in stable isotope-resolved metabolomics (SIRM) using direct infusion nanoelectrospray ultra-high-resolution Fourier transform mass spectrometry (DI-nESI-UHR-FTMS). | Yang, JoonSeon; Fan, Teresa W M; Brandon, Jason A; Lane, Andrew N; Higashi, Richard M | Analytica chimica acta | 34556237 | 2021 Oct 09 |
| Serum metabolomic biomarkers of perceptual speed in cognitively normal and mildly impaired subjects with fasting state stratification. | Borkowski, Kamil; Taha, Ameer Y; Pedersen, Theresa L; De Jager, Philip L; Bennett, David A; Arnold, Matthias; Kaddurah-Daouk, Rima; Newman, John W | Scientific reports | 34556796 | 2021 Sep 23 |
| Intravenous administration of three multiwalled carbon nanotubes to female rats and their effect on urinary biochemical profile. | Mortensen, Ninell P; Snyder, Rodney W; Pathmasiri, Wimal; Moreno Caffaro, Maria; Sumner, Susan J; Fennell, Timothy R | Journal of applied toxicology : JAT | 34569639 | 2021 Sep 27 |
| Metabolomics activity screening of T cell-induced colitis reveals anti-inflammatory metabolites. | Montenegro-Burke, J Rafael; Kok, Bernard P; Guijas, Carlos; Domingo-Almenara, Xavier; Moon, Clara; Galmozzi, Andrea; Kitamura, Seiya; Eckmann, Lars; Saez, Enrique; Siuzdak, Gary E; Wolan, Dennis W | Science signaling | 34582249 | 2021 09 28 |
| Cyst fluid metabolites distinguish malignant from benign pancreatic cysts. | Shi, Jiaqi; Yi, Zhujun; Jin, Lin; Zhao, Lili; Raskind, Alexander; Yeomans, Larisa; Nwosu, Zeribe C; Simeone, Diane M; Lyssiotis, Costas A; Stringer, Kathleen A; Kwon, Richard S | Neoplasia (New York, N.Y.) | 34583246 | 2021 11 |
| Lipidomic approaches to dissect dysregulated lipid metabolism in kidney disease. | Baek, Judy; He, Chenchen; Afshinnia, Farsad; Michailidis, George; Pennathur, Subramaniam | Nature reviews. Nephrology | 34616096 | 2022 01 |
| Serum lipids are associated with nonalcoholic fatty liver disease: a pilot case-control study in Mexico. | Flores, Yvonne N; Amoon, Aryana T; Su, Baolong; Velazquez-Cruz, Rafael; Ramírez-Palacios, Paula; Salmerón, Jorge; Rivera-Paredez, Berenice; Sinsheimer, Janet S; Lusis, Aldons J; Huertas-Vazquez, Adriana; Saab, Sammy; Glenn, Beth A; May, Folasade P; Willia | Lipids in health and disease | 34629052 | 2021 Oct 10 |
| High-confidence structural annotation of metabolites absent from spectral libraries. | Hoffmann, Martin A; Nothias, Louis-Félix; Ludwig, Marcus; Fleischauer, Markus; Gentry, Emily C; Witting, Michael; Dorrestein, Pieter C; Dührkop, Kai; Böcker, Sebastian | Nature biotechnology | 34650271 | 2021 Oct 14 |
| A metabolome atlas of the aging mouse brain. | Ding, Jun; Ji, Jian; Rabow, Zachary; Shen, Tong; Folz, Jacob; Brydges, Christopher R; Fan, Sili; Lu, Xinchen; Mehta, Sajjan; Showalter, Megan R; Zhang, Ying; Araiza, Renee; Bower, Lynette R; Lloyd, K C Kent; Fiehn, Oliver | Nature communications | 34654818 | 2021 10 15 |
| MSCAT: A Machine Learning Assisted Catalog of Metabolomics Software Tools. | Dekermanjian, Jonathan; Labeikovsky, Wladimir; Ghosh, Debashis; Kechris, Katerina | Metabolites | 34677393 | 2021 Oct 02 |
| Association of Cesarean Delivery and Formula Supplementation with the Stool Metabolome of 6-Week-Old Infants. | Hoen, Anne G; Coker, Modupe O; Madan, Juliette C; Pathmasiri, Wimal; McRitchie, Susan; Dade, Erika F; Doherty, Brett T; Sumner, Susan; Karagas, Margaret R | Metabolites | 34677417 | 2021 Oct 13 |
| PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes. | Carpenter, Charlie M; Zhang, Weiming; Gillenwater, Lucas; Severn, Cameron; Ghosh, Tusharkanti; Bowler, Russell; Kechris, Katerina; Ghosh, Debashis | PLoS computational biology | 34679079 | 2021 10 |
| Untargeted Metabolome- and Transcriptome-Wide Association Study Suggests Causal Genes Modulating Metabolite Concentrations in Urine. | Sönmez Flitman, Reyhan; Khalili, Bita; Kutalik, Zoltan; Rueedi, Rico; Brümmer, Anneke; Bergmann, Sven | Journal of proteome research | 34699229 | 2021 11 05 |
| 6-Phosphogluconate dehydrogenase (6PGD), a key checkpoint in reprogramming of regulatory T cells metabolism and function. | Daneshmandi, Saeed; Cassel, Teresa; Higashi, Richard M; Fan, Teresa W-M; Seth, Pankaj | eLife | 34709178 | 2021 10 28 |
| Fecal metabolomics reveals products of dysregulated proteolysis and altered microbial metabolism in obesity-related osteoarthritis. | Rushing, B R; McRitchie, S; Arbeeva, L; Nelson, A E; Azcarate-Peril, M A; Li, Y-Y; Qian, Y; Pathmasiri, W; Sumner, S C J; Loeser, R F | Osteoarthritis and cartilage | 34718137 | 2022 01 |
| Urobiome: An outlook on the metagenome of urological diseases. | Shoemaker, Rachel; Kim, Jayoung | Investigative and clinical urology | 34729961 | 2021 11 |
| Serum metabolomic analysis reveals several novel metabolites in association with excessive alcohol use - an exploratory study. | Liu, Danni; Yang, Zhihong; Chandler, Kristina; Oshodi, Adepeju; Zhang, Ting; Ma, Jing; Kusumanchi, Praveen; Huda, Nazmul; Heathers, Laura; Perez, Kristina; Tyler, Kelsey; Ross, Ruth Ann; Jiang, Yanchao; Zhang, Dabao; Zhang, Min; Liangpunsakul, Suthat | Translational research : the journal of laboratory and clinical medicine | 34743014 | 2022 02 |
| Emerging technologies and their impact on regulatory science. | Anklam, Elke; Bahl, Martin Iain; Ball, Robert; Beger, Richard D; Cohen, Jonathan; Fitzpatrick, Suzanne; Girard, Philippe; Halamoda-Kenzaoui, Blanka; Hinton, Denise; Hirose, Akihiko; Hoeveler, Arnd; Honma, Masamitsu; Hugas, Marta; Ishida, Seichi; Kass, George En; Kojima, Hajime; Krefting, Ira; Liachenko, Serguei; Liu, Yan; Masters, Shane; Marx, Uwe; McCarthy, Timothy; Mercer, Tim; Patri, Anil; Pelaez, Carmen; Pirmohamed, Munir; Platz, Stefan; Ribeiro, Alexandre Js; Rodricks, Joseph V; Rusyn, Ivan; Salek, Reza M; Schoonjans, Reinhilde; Silva, Primal; Svendsen, Clive N; Sumner, Susan; Sung, Kyung; Tagle, Danilo; Tong, Li; Tong, Weida; Eijnden-van-Raaij, Janny van den; Vary, Neil; Wang, Tao; Waterton, John; Wang, May; Wen, Hairuo; Wishart, David; Yuan, Yinyin; Slikker Jr, William | Experimental biology and medicine (Maywood, N.J.) | 34783606 | 2022 01 |
| Modifying Chromatography Conditions for Improved Unknown Feature Identification in Untargeted Metabolomics. | Anderson, Brady G; Raskind, Alexander; Habra, Hani; Kennedy, Robert T; Evans, Charles R | Analytical chemistry | 34794310 | 2021 12 07 |
| A standardized gnotobiotic mouse model harboring a minimal 15-member mouse gut microbiota recapitulates SOPF/SPF phenotypes. | Darnaud, Marion; De Vadder, Filipe; Bogeat, Pascaline; Boucinha, Lilia; Bulteau, Anne-Laure; Bunescu, Andrei; Couturier, Céline; Delgado, Ana; Dugua, Hélène; Elie, Céline; Mathieu, Alban; Novotná, Tereza; Ouattara, Djomangan Adama; Planel, Séverine; Saliou, Adrien; Šrůtková, Dagmar; Yansouni, Jennifer; Stecher, Bärbel; Schwarzer, Martin; Leulier, François; Tamellini, Andrea | Nature communications | 34795236 | 2021 11 18 |
| Untargeted Lipidomics of Non-Small Cell Lung Carcinoma Demonstrates Differentially Abundant Lipid Classes in Cancer vs. Non-Cancer Tissue. | Mitchell, Joshua M; Flight, Robert M; Moseley, Hunter N B | Metabolites | 34822397 | 2021 Oct 28 |
| Mass Spectrometry Adduct Calculator. | Blumer, Madison R; Chang, Christine H; Brayfindley, Evangelina; Nunez, Jamie R; Colby, Sean M; Renslow, Ryan S; Metz, Thomas O | Journal of chemical information and modeling | 34842435 | 2021 12 27 |
| Sodium dichloroacetate stimulates cardiac mitochondrial metabolism and improves cardiac conduction in the ovine fetus during labor. | Joseph, Serene; Li, Mengchen; Zhang, Sicong; Horne, Lloyd; Stacpoole, Peter W; Wohlgemuth, Stephanie E; Edison, Arthur S; Wood, Charles; Keller-Wood, Maureen | American journal of physiology. Regulatory, integrative and comparative physiology | 34851727 | 2022 01 01 |
| Accelerating strain phenotyping with desorption electrospray ionization-imaging mass spectrometry and untargeted analysis of intact microbial colonies. | Ellis, Berkley M; Babele, Piyoosh K; May, Jody C; Johnson, Carl H; Pfleger, Brian F; Young, Jamey D; McLean, John A | Proceedings of the National Academy of Sciences of the United States of America | 34857637 | 2021 12 07 |
| Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification. | Li, Yuanyue; Kind, Tobias; Folz, Jacob; Vaniya, Arpana; Mehta, Sajjan Singh; Fiehn, Oliver | Nature methods | 34857935 | 2021 Dec 02 |
| GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. | Petras, Daniel; Phelan, Vanessa V; Acharya, Deepa; Allen, Andrew E; Aron, Allegra T; Bandeira, Nuno; Bowen, Benjamin P; Belle-Oudry, Deirdre; Boecker, Simon; Cummings Jr, Dale A; Deutsch, Jessica M; Fahy, Eoin; Garg, Neha; Gregor, Rachel; Handelsman, Jo; Navarro-Hoyos, Mirtha; Jarmusch, Alan K; Jarmusch, Scott A; Louie, Katherine; Maloney, Katherine N; Marty, Michael T; Meijler, Michael M; Mizrahi, Itzhak; Neve, Rachel L; Northen, Trent R; Molina-Santiago, Carlos; Panitchpakdi, Morgan; Pullman, Benjamin; Puri, Aaron W; Schmid, Robin; Subramaniam, Shankar; Thukral, Monica; Vasquez-Castro, Felipe; Dorrestein, Pieter C; Wang, Mingxun | Nature methods | 34862502 | 2022 02 |
| The Exposome and Toxicology: A Win-Win Collaboration. | Barouki, Robert; Audouze, Karine; Becker, Christel; Blaha, Ludek; Coumoul, Xavier; Karakitsios, Spyros; Klanova, Jana; Miller, Gary W; Price, Elliott J; Sarigiannis, Denis | Toxicological sciences : an official journal of the Society of Toxicology | 34878125 | 2022 Feb 28 |
| Metabolic flux analysis of the non-transitory starch tradeoff for lipid production in mature tobacco leaves. | Chu, Kevin L; Koley, Somnath; Jenkins, Lauren M; Bailey, Sally R; Kambhampati, Shrikaar; Foley, Kevin; Arp, Jennifer J; Morley, Stewart A; Czymmek, Kirk J; Bates, Philip D; Allen, Doug K | Metabolic engineering | 34920088 | 2022 Jan |
| Microbial metabolite delta-valerobetaine is a diet-dependent obesogen. | Liu, Ken H; Owens, Joshua A; Saeedi, Bejan; Cohen, Catherine E; Bellissimo, Moriah P; Naudin, Crystal; Darby, Trevor; Druzak, Samuel; Maner-Smith, Kristal; Orr, Michael; Hu, Xin; Fernandes, Jolyn; Camacho, Mary Catherine; Hunter-Chang, Sarah; VanInsberghe, David; Ma, Chunyu; Ganesh, Thota; Yeligar, Samantha M; Uppal, Karan; Go, Young-Mi; Alvarez, Jessica A; Vos, Miriam B; Ziegler, Thomas R; Woodworth, Michael H; Kraft, Colleen S; Jones, Rheinallt M; Ortlund, Eric; Neish, Andrew S; Jones, Dean P | Nature metabolism | 34931082 | 2021 12 |
| Profiling Parkinson's disease cognitive phenotypes via resting-state magnetoencephalography. | Simon, Olivier B; Rojas, Donald C; Ghosh, Debashis; Yang, Xinyi; Rogers, Sarah E; Martin, Christine S; Holden, Samantha K; Kluger, Benzi M; Buard, Isabelle | Journal of neurophysiology | 34936515 | 2022 01 01 |
| Hyaluronic acid fuels pancreatic cancer cell growth. | Kim, Peter K; Halbrook, Christopher J; Kerk, Samuel A; Radyk, Megan; Wisner, Stephanie; Kremer, Daniel M; Sajjakulnukit, Peter; Andren, Anthony; Hou, Sean W; Trivedi, Ayush; Thurston, Galloway; Anand, Abhinav; Yan, Liang; Salamanca-Cardona, Lucia; Welling, Samuel D; Zhang, Li; Pratt, Matthew R; Keshari, Kayvan R; Ying, Haoqiang; Lyssiotis, Costas A | eLife | 34951587 | 2021 12 24 |
| Reuterin in the healthy gut microbiome suppresses colorectal cancer growth through altering redox balance. | Cancer cell | 34951957 | 2022 Feb 14 | |
| INCA 2.0: A tool for integrated, dynamic modeling of NMR- and MS-based isotopomer measurements and rigorous metabolic flux analysis. | Rahim, Mohsin; Ragavan, Mukundan; Deja, Stanislaw; Merritt, Matthew E; Burgess, Shawn C; Young, Jamey D | Metabolic engineering | 34965470 | 2022 Jan |
| Mitochondrial superoxide targets energy metabolism to modulate epigenetic regulation of NRF2-mediated transcription. | Dhar, Sanjit K; Scott, Timothy; Wang, Chi; Fan, Teresa W M; St Clair, Daret K | Free radical biology & medicine | 34968705 | 2022 Feb 01 |
| Metabolite discovery: Biochemistry's scientific driver. | Giera, Martin; Yanes, Oscar; Siuzdak, Gary | Cell metabolism | 34986335 | 2022 01 04 |
| Quantum Chemical Prediction of Electron Ionization Mass Spectra of Trimethylsilylated Metabolites. | Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver | Analytical chemistry | 35006668 | 2022 01 25 |
| The metabolome as a biomarker of aging in Drosophila melanogaster. | Zhao, Xiaqing; Golic, Forrest T; Harrison, Benjamin R; Manoj, Meghna; Hoffman, Elise V; Simon, Neta; Johnson, Richard; MacCoss, Michael J; McIntyre, Lauren M; Promislow, Daniel E L | Aging cell | 35019203 | 2022 Feb |
| Evaluating the Accuracy of the QCEIMS Approach for Computational Prediction of Electron Ionization Mass Spectra of Purines and Pyrimidines. | Lee, Jesi; Kind, Tobias; Tantillo, Dean Joseph; Wang, Lee-Ping; Fiehn, Oliver | Metabolites | 35050190 | 2022 Jan 12 |
| Data-Driven Soft Independent Modeling of Class Analogy in Paper Spray Ionization Mass Spectrometry-Based Metabolomics for Rapid Detection of Prostate Cancer. | Pinto, Frederico G; Mahmud, Iqbal; Rubio, Vanessa Y; Máquina, Ademar Domingos Viagem; Furtado Durans, Anízia Fausta; Neto, Waldomiro Borges; Garrett, Timothy J | Analytical chemistry | 35060703 | 2022 02 01 |
| Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's disease. | Caldwell, Andrew B; Liu, Qing; Zhang, Can; Schroth, Gary P; Galasko, Douglas R; Rynearson, Kevin D; Tanzi, Rudolph E; Yuan, Shauna H; Wagner, Steven L; Subramaniam, Shankar | Alzheimer's & dementia : the journal of the Alzheimer's Association | 35084109 | 2022 Jan 27 |
| Pharmacometabonomic association of cyclophosphamide 4-hydroxylation in hematopoietic cell transplant recipients. | McCune, Jeannine S; Nakamura, Ryotaro; O'Meally, Denis; Randolph, Timothy W; Sandmaier, Brenda M; Karolak, Aleksandra; Hockenbery, David; Navarro, Sandi L | Clinical and translational science | 35106927 | 2022 Feb 02 |
| Acyl-CoA Identification in Mouse Liver Samples Using the In Silico CoA-Blast Tandem Mass Spectral Library. | Keshet, Uri; Kind, Tobias; Lu, Xinchen; Devi, Sarita; Fiehn, Oliver | Analytical chemistry | 35119811 | 2022 02 15 |
| Disrupting the MYC-TFEB Circuit Impairs Amino Acid Homeostasis and Provokes Metabolic Anergy. | Fernandez, Mario R; Schaub, Franz X; Yang, Chunying; Li, Weimin; Yun, Seongseok; Schaub, Stephanie K; Dorsey, Frank C; Liu, Min; Steeves, Meredith A; Ballabio, Andrea; Tzankov, Alexandar; Chen, Zhihua; Koomen, John M; Berglund, Anders E; Cleveland, John L | Cancer research | 35149590 | 2022 04 01 |
| Multiomic characterization of pancreatic cancer-associated macrophage polarization reveals deregulated metabolic programs driven by the GM-CSF-PI3K pathway. | Boyer, Seth; Lee, Ho-Joon; Steele, Nina; Zhang, Li; Sajjakulnukit, Peter; Andren, Anthony; Ward, Matthew H; Singh, Rima; Basrur, Venkatesha; Zhang, Yaqing; Nesvizhskii, Alexey I; Pasca di Magliano, Marina; Halbrook, Christopher J; Lyssiotis, Costas A | eLife | 35156921 | 2022 02 14 |
| Maternal plasma lipids are involved in the pathogenesis of preterm birth. | Chen, Yile; He, Bing; Liu, Yu; Aung, Max T; Rosario-Pabón, Zaira; Vélez-Vega, Carmen M; Alshawabkeh, Akram; Cordero, José F; Meeker, John D; Garmire, Lana X | GigaScience | 35166340 | 2022 02 15 |
| Neutral Loss Mass Spectral Data Enhances Molecular Similarity Analysis in METLIN. | Aisporna, Aries; Benton, H Paul; Chen, Andy; Derks, Rico J E; Galano, Jean Marie; Giera, Martin; Siuzdak, Gary | Journal of the American Society for Mass Spectrometry | 35174708 | 2022 Mar 02 |
| Glucose-6-phosphatase catalytic subunit 2 negatively regulates glucose oxidation and insulin secretion in pancreatic β-cells. | Rahim, Mohsin; Nakhe, Arya Y; Banerjee, Deveena R; Overway, Emily M; Bosma, Karin J; Rosch, Jonah C; Oeser, James K; Wang, Bo; Lippmann, Ethan S; Jacobson, David A; O'Brien, Richard M; Young, Jamey D | The Journal of biological chemistry | 35176280 | 2022 Feb 15 |
| Effects of Lean Pork on Microbiota and Microbial-Metabolite Trimethylamine-N-Oxide: A Randomized Controlled Non-Inferiority Feeding Trial Based on the Dietary Guidelines for Americans. | Dhakal, Samitinjaya; Moazzami, Zahra; Perry, Cydne; Dey, Moul | Molecular nutrition & food research | 35182101 | 2022 05 |
| Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology. | Sies, Helmut; Belousov, Vsevolod V; Chandel, Navdeep S; Davies, Michael J; Jones, Dean P; Mann, Giovanni E; Murphy, Michael P; Yamamoto, Masayuki; Winterbourn, Christine | Nature reviews. Molecular cell biology | 35190722 | 2022 07 |
| Cloud-based archived metabolomics data: A resource for in-source fragmentation/annotation, meta-analysis and systems biology. | Palermo, Amelia; Huan, Tao; Rinehart, Duane; Rinschen, Markus M; Li, Shuzhao; O'Donnell, Valerie B; Fahy, Eoin; Xue, Jingchuan; Subramaniam, Shankar; Benton, H Paul; Siuzdak, Gary | Analytical science advances | 35190800 | 2020 Jun |
| Detecting de novo Hepatic Ketogenesis Using Hyperpolarized [2-13C] Pyruvate. | Ragavan, Mukundan; McLeod, Marc A; Rushin, Anna; Merritt, Matthew E | Frontiers in physiology | 35197867 | 2022 |
| Plasma Oxylipin Profile Discriminates Ethnicities in Subjects with Non-Alcoholic Steatohepatitis: An Exploratory Analysis. | Mazi, Tagreed A; Borkowski, Kamil; Fiehn, Oliver; Bowlus, Christopher L; Sarkar, Souvik; Matsukuma, Karen; Ali, Mohamed R; Kieffer, Dorothy A; Wan, Yu-Jui Y; Stanhope, Kimber L; Havel, Peter J; Newman, John W; Medici, Valentina | Metabolites | 35208265 | 2022 Feb 19 |
| GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease. | McIntyre, Lauren M; Huertas, Francisco; Morse, Alison M; Kaletsky, Rachel; Murphy, Coleen T; Kalia, Vrinda; Miller, Gary W; Moskalenko, Olexander; Conesa, Ana; Mor, Danielle E | Scientific reports | 35228596 | 2022 02 28 |
| Glutathione deficiency decreases lipid droplet stores and increases reactive oxygen species in mouse oocytes†. | Malott, Kelli F; Reshel, Samantha; Ortiz, Laura; Luderer, Ulrike | Biology of reproduction | 35238901 | 2022 06 13 |
| Extrinsic KRAS Signaling Shapes the Pancreatic Microenvironment Through Fibroblast Reprogramming. | Velez-Delgado, Ashley; Donahue, Katelyn L; Brown, Kristee L; Du, Wenting; Irizarry-Negron, Valerie; Menjivar, Rosa E; Lasse Opsahl, Emily L; Steele, Nina G; The, Stephanie; Lazarus, Jenny; Sirihorachai, Veerin R; Yan, Wei; Kemp, Samantha B; Kerk, Samuel A; Bollampally, Murali; Yang, Sion; Scales, Michael K; Avritt, Faith R; Lima, Fatima; Lyssiotis, Costas A; Rao, Arvind; Crawford, Howard C; Bednar, Filip; Frankel, Timothy L; Allen, Benjamin L; Zhang, Yaqing; Pasca di Magliano, Marina | Cellular and molecular gastroenterology and hepatology | 35245687 | 2022 |
| Exercise training remodels subcutaneous adipose tissue in adults with obesity even without weight loss. | Ahn, Cheehoon; Ryan, Benjamin J; Schleh, Michael W; Varshney, Pallavi; Ludzki, Alison C; Gillen, Jenna B; Van Pelt, Douglas W; Pitchford, Lisa M; Howton, Suzette M; Rode, Thomas; Hummel, Scott L; Burant, Charles F; Little, Jonathan P; Horowitz, Jeffrey F | The Journal of physiology | 35249225 | 2022 May |
| Trichloroethylene modifies energy metabolites in the amniotic fluid of Wistar rats. | Su, Anthony L; Harris, Sean M; Elkin, Elana R; Karnovsky, Alla; Colacino, Justin A; Loch-Caruso, Rita | Reproductive toxicology (Elmsford, N.Y.) | 35301063 | 2022 04 |
| Plasma Metabolite Profiles Following Consumption of Animal Protein and Soybean-Based Diet in Hypercholesterolemic Postmenopausal Women. | Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H | Metabolites | 35323651 | 2022 Feb 25 |
| A rapid and robust method for amino acid quantification using a simple N-hydroxysuccinimide ester derivatization and liquid chromatography-ion mobility-mass spectrometry. | Domenick, Taylor M; Jones, Austin L; Kemperman, Robin H J; Yost, Richard A | Analytical and bioanalytical chemistry | 35338375 | 2022 Jul |
| Stress-Induced Accumulation of HnRNP K into Stress Granules. | Kim, Jayoung; Yeon, Austin; Kim, Woong-Ki; Kim, Khae-Hawn; Ohn, Takbum | Journal of cancer science and clinical therapeutics | 35340804 | 2021 |
| Ex Vivo Hepatic Perfusion through the Portal Vein in Mouse. | Giacalone, Anthony G; Merritt, Matthew E; Ragavan, Mukundan | Journal of visualized experiments : JoVE | 35343950 | 2022 03 09 |
| In Silico Collision Cross Section Calculations to Aid Metabolite Annotation. | Das, Susanta; Tanemura, Kiyoto Aramis; Dinpazhoh, Laleh; Keng, Mithony; Schumm, Christina; Leahy, Lydia; Asef, Carter K; Rainey, Markace; Edison, Arthur S; Fernández, Facundo M; Merz Jr, Kenneth M | Journal of the American Society for Mass Spectrometry | 35378036 | 2022 May 04 |
| Suppression of SDP1 Improves Soybean Seed Composition by Increasing Oil and Reducing Undigestible Oligosaccharides. | Aznar-Moreno, Jose A; Mukherjee, Thiya; Morley, Stewart A; Duressa, Dechassa; Kambhampati, Shrikaar; Chu, Kevin L; Koley, Somnath; Allen, Doug K; Durrett, Timothy P | Frontiers in plant science | 35401590 | 2022 |
| Human Norovirus Triggers Primary B Cell Immune Activation In Vitro. | Mirabelli, Carmen; Jones, Melissa K; Young, Vivienne L; Kolawole, Abimbola O; Owusu, Irene; Shan, Mengrou; Abuaita, Basel; Turula, Holly; Trevino, Jose G; Grigorova, Irina; Lundy, Steven K; Lyssiotis, Costas A; Ward, Vernon K; Karst, Stephanie M; Wobus, Christiane E | mBio | 35404121 | 2022 04 26 |
| Editorial for "Whole-Abdomen Metabolic Imaging of Healthy Volunteers Using Hyperpolarized [1-13 C]pyruvate MRI". | Merritt, Matthew E | Journal of magnetic resonance imaging : JMRI | 35416358 | 2022 Apr 13 |
| DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data. | Colby, Sean M; Chang, Christine H; Bade, Jessica L; Nunez, Jamie R; Blumer, Madison R; Orton, Daniel J; Bloodsworth, Kent J; Nakayasu, Ernesto S; Smith, Richard D; Ibrahim, Yehia M; Renslow, Ryan S; Metz, Thomas O | Analytical chemistry | 35430813 | 2022 04 26 |
| foodMASST a mass spectrometry search tool for foods and beverages. | West, Kiana A; Schmid, Robin; Gauglitz, Julia M; Wang, Mingxun; Dorrestein, Pieter C | NPJ science of food | 35444218 | 2022 Apr 20 |
| Plasma concentrations of lipophilic persistent organic pollutants and glucose homeostasis in youth populations. | Baumert, Brittney O; Goodrich, Jesse A; Hu, Xin; Walker, Douglas I; Alderete, Tanya L; Chen, Zhanghua; Valvi, Damaskini; Rock, Sarah; Berhane, Kiros; Gilliland, Frank D; Goran, Michael I; Jones, Dean P; Conti, David V; Chatzi, Leda | Environmental research | 35447156 | 2022 09 |
| Predictive Modeling of Alzheimer's and Parkinson's Disease Using Metabolomic and Lipidomic Profiles from Cerebrospinal Fluid. | Hwangbo, Nathan; Zhang, Xinyu; Raftery, Daniel; Gu, Haiwei; Hu, Shu-Ching; Montine, Thomas J; Quinn, Joseph F; Chung, Kathryn A; Hiller, Amie L; Wang, Dongfang; Fei, Qiang; Bettcher, Lisa; Zabetian, Cyrus P; Peskind, Elaine R; Li, Ge; Promislow, Daniel E L; Davis, Marie Y; Franks, Alexander | Metabolites | 35448464 | 2022 Mar 22 |
| A Review on Differential Abundance Analysis Methods for Mass Spectrometry-Based Metabolomic Data. | Huang, Zhengyan; Wang, Chi | Metabolites | 35448492 | 2022 Mar 30 |
| Modular and mechanistic changes across stages of colorectal cancer. | Rahiminejad, Sara; Maurya, Mano R; Mukund, Kavitha; Subramaniam, Shankar | BMC cancer | 35448980 | 2022 Apr 21 |
| Products of gut microbial Toll/interleukin-1 receptor domain NADase activities in gnotobiotic mice and Bangladeshi children with malnutrition. | Weagley, James S; Zaydman, Mark; Venkatesh, Siddarth; Sasaki, Yo; Damaraju, Neha; Yenkin, Alex; Buchser, William; Rodionov, Dmitry A; Osterman, Andrei; Ahmed, Tahmeed; Barratt, Michael J; DiAntonio, Aaron; Milbrandt, Jeffrey; Gordon, Jeffrey I | Cell reports | 35476981 | 2022 04 26 |
| Analyses of pseudoexfoliation aqueous humor lipidome. | Collao, Vanessa; Morris, Jada; Chauhan, Muhammad Zain; Abdelrahman, Leila; Martínez-de-la-Casa, Jose María; Vidal-Villegas, Beatriz; Burgos-Blasco, Barbara; Bhattacharya, Sanjoy K | Molecular omics | 35485348 | 2022 06 13 |
| BioTransformer 3.0-a web server for accurately predicting metabolic transformation products. | Wishart, David S; Tian, Siyang; Allen, Dana; Oler, Eponine; Peters, Harrison; Lui, Vicki W; Gautam, Vasuk; Djoumbou-Feunang, Yannick; Greiner, Russell; Metz, Thomas O | Nucleic acids research | 35536252 | 2022 May 10 |
| Lipogenesis mediated by OGR1 regulates metabolic adaptation to acid stress in cancer cells via autophagy. | Pillai, Smitha; Mahmud, Iqbal; Mahar, Rohit; Griffith, Crystal; Langsen, Michael; Nguyen, Jonathan; Wojtkowiak, Jonathan W; Swietach, Pawel; Gatenby, Robert A; Bui, Marilyn M; Merritt, Matthew E; McDonald, Patricia; Garrett, Timothy J; Gillies, Robert J | Cell reports | 35545051 | 2022 05 10 |
| The impact of methodological choices when developing predictive models using urinary metabolite data. | Krstic, Nikolas; Multani, Kevin; Wishart, David S; Blydt-Hansen, Tom; Cohen Freue, Gabriela V | Statistics in medicine | 35567357 | 2022 08 15 |
| Evaluating Co-occurrence as a Criterion for Identification of Undocumented Xenobiotic Exposures in Human Metabolomics. | Singer, Grant T; Liu, Ken H; Lee, Choon M; Miller, Gary W; Li, Shuzhao; Go, Young-Mi; Jones, Dean P; Morgan, Edward T | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 35567453 | 2022 May |
| Mechanism-aware imputation: a two-step approach in handling missing values in metabolomics. | Dekermanjian, Jonathan P; Shaddox, Elin; Nandy, Debmalya; Ghosh, Debashis; Kechris, Katerina | BMC bioinformatics | 35578165 | 2022 May 16 |
| Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines. | Nanni, Adalena V; Morse, Alison M; Newman, Jeremy R B; Choquette, Nicole E; Wedow, Jessica M; Liu, Zihao; Leakey, Andrew D B; Conesa, Ana; Ainsworth, Elizabeth A; McIntyre, Lauren M | Genetics | 35579358 | 2022 Jul 30 |
| PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases. | Liu, Tianyuan; Salguero, Pedro; Petek, Marko; Martinez-Mira, Carlos; Balzano-Nogueira, Leandro; Ramšak, Živa; McIntyre, Lauren; Gruden, Kristina; Tarazona, Sonia; Conesa, Ana | Nucleic acids research | 35609982 | 2022 May 24 |
| CFM-ID 4.0 - a web server for accurate MS-based metabolite identification. | Wang, Fei; Allen, Dana; Tian, Siyang; Oler, Eponine; Gautam, Vasuk; Greiner, Russell; Metz, Thomas O; Wishart, David S | Nucleic acids research | 35610037 | 2022 May 24 |
| SS-31 does not prevent or reduce muscle atrophy 7 days after a 65 kdyne contusion spinal cord injury in young male mice. | Graham, Zachary A; DeBerry, Jennifer J; Cardozo, Christopher P; Bamman, Marcas M | Physiological reports | 35611788 | 2022 05 |
| Comparative Metabolic Analysis Reveals a Metabolic Switch in Mature, Hydrated, and Germinated Pollen in Arabidopsis thaliana. | Wang, Jiang; Kambhampati, Shrikaar; Allen, Doug K; Chen, Li-Qing | Frontiers in plant science | 35665175 | 2022 |
| Identification of cerebrospinal fluid and serum metabolomic biomarkers in first episode psychosis patients. | Shang, Pei; Ho, Ada Man-Choi; Tufvesson-Alm, Maximilian; Lindberg, Daniel R; Grant, Caroline W; Orhan, Funda; Eren, Feride; Bhat, Maria; Engberg, Göran; Schwieler, Lilly; Fatouros-Bergman, Helena; Imbeault, Sophie; Iverson, Ryan M; Dasari, Surendra; Piehl | Translational psychiatry | 35665740 | 2022 06 03 |
| Bacillus subtilis biofilm matrix components target seed oil bodies to promote growth and anti-fungal resistance in melon. | Berlanga-Clavero, M V; Molina-Santiago, C; Caraballo-Rodríguez, A M; Petras, D; Díaz-Martínez, L; Pérez-García, A; de Vicente, A; Carrión, V J; Dorrestein, P C; Romero, D | Nature microbiology | 35668112 | 2022 Jul |
| A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants. | Farley, Scotland E; Kyle, Jennifer E; Leier, Hans C; Bramer, Lisa M; Weinstein, Jules B; Bates, Timothy A; Lee, Joon-Yong; Metz, Thomas O; Schultz, Carsten; Tafesse, Fikadu G | Nature communications | 35715395 | 2022 06 17 |
| Using MetaboAnalyst 5.0 for LC-HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data. | Pang, Zhiqiang; Zhou, Guangyan; Ewald, Jessica; Chang, Le; Hacariz, Orcun; Basu, Niladri; Xia, Jianguo | Nature protocols | 35715522 | 2022 08 |
| Multiassay nutritional metabolomics profiling of low vitamin A status versus adequacy is characterized by reduced plasma lipid mediators among lactating women in the Philippines: A pilot study. | Johnson, Catherine M; Rosario, Rodrigo; Brito, Alex; Agrawal, Karan; Fanter, Rob; Lietz, Georg; Haskell, Marjorie; Engle-Stone, Reina; Newman, John W; La Frano, Michael R | Nutrition research (New York, N.Y.) | 35732076 | 2022 08 |
| Memory-Efficient Searching of Gas-Chromatography Mass Spectra Accelerated by Prescreening. | Smirnov, Aleksandr; Liao, Yunfei; Du, Xiuxia | Metabolites | 35736424 | 2022 May 29 |
| Network Approaches to Integrate Analyses of Genetics and Metabolomics Data with Applications to Fetal Programming Studies. | Kuang, Alan; Hayes, M Geoffrey; Hivert, Marie-France; Balasubramanian, Raji; Lowe Jr, William L; Scholtens, Denise M | Metabolites | 35736446 | 2022 Jun 02 |
| Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier Transform Mass Spectrometry Experiments. | Flight, Robert M; Mitchell, Joshua M; Moseley, Hunter N B | Metabolites | 35736448 | 2022 Jun 02 |
| Plasma Metabolite Response to Simple, Refined and Unrefined Carbohydrate-Enriched Diets in Older Adults-Randomized Controlled Crossover Trial. | Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H | Metabolites | 35736480 | 2022 Jun 15 |
| High-Throughput Production of Diverse Xenobiotic Metabolites with Cytochrome P450-Transduced Huh7 Hepatoma Cell Lines. | Lee, Choon-Myung; Liu, Ken H; Singer, Grant; Miller, Gary W; Li, Shuzhao; Jones, Dean P; Morgan, Edward T | Drug metabolism and disposition: the biological fate of chemicals | 35752443 | 2022 09 |
| Computer-aided drug design, quantum-mechanical methods for biological problems. | Manathunga, Madushanka; Götz, Andreas W; Merz Jr, Kenneth M | Current opinion in structural biology | 35779437 | 2022 08 |
| Mouse models of NADK2 deficiency analyzed for metabolic and gene expression changes to elucidate pathophysiology. | Murray, G; Bais, P; Hatton, C; Tadenev, A L D; Hoffmann, B R; Stodola, T J; Morelli, K H; Pratt, S L; Schroeder, D; Doty, R; Fiehn, O; John, S W M; Bult, C J; Cox, G A; Burgess, R W | Human molecular genetics | 35796562 | 2022 Jul 07 |
| Age-Independent Cardiac Protection by Pharmacological Activation of Beclin-1 During Endotoxemia and Its Association With Energy Metabolic Reprograming in Myocardium-A Targeted Metabolomics Study. | Kim, Matthew; Nikouee, Azadeh; Zou, Raymond; Ren, Di; He, Zhibin; Li, Ji; Wang, Lu; Djukovic, Danijel; Raftery, Daniel; Purcell, Hayley; Promislow, Daniel; Sun, Yuxiao; Goodarzi, Mohammad; Zhang, Qing-Jun; Liu, Zhi-Ping; Zang, Qun Sophia | Journal of the American Heart Association | 35861821 | 2022 07 19 |
| Metabolic signatures associated with oncolytic myxoma viral infections. | Mahar, Rohit; Ragavan, Mukundan; Chang, Mario C; Hardiman, Savannah; Moussatche, Nissin; Behar, Adam; Renne, Rolf; Merritt, Matthew E | Scientific reports | 35871072 | 2022 07 23 |
| Microbial Metabolite 3-Indolepropionic Acid Mediates Immunosuppression. | Guijas, Carlos; Horton, Lucy E; Hoang, Linh; Domingo-Almenara, Xavier; Billings, Elizabeth M; Ware, Brian C; Sullivan, Brian; Siuzdak, Gary | Metabolites | 35888769 | 2022 Jul 14 |
| NMR and Metabolomics-A Roadmap for the Future. | Wishart, David S; Cheng, Leo L; Copié, Valérie; Edison, Arthur S; Eghbalnia, Hamid R; Hoch, Jeffrey C; Gouveia, Goncalo J; Pathmasiri, Wimal; Powers, Robert; Schock, Tracey B; Sumner, Lloyd W; Uchimiya, Mario | Metabolites | 35893244 | 2022 Jul 23 |
| Synergistic Effect of β-Lapachone and Aminooxyacetic Acid on Central Metabolism in Breast Cancer. | Chang, Mario C; Mahar, Rohit; McLeod, Marc A; Giacalone, Anthony G; Huang, Xiumei; Boothman, David A; Merritt, Matthew E | Nutrients | 35893874 | 2022 Jul 22 |
| Reducing ether lipids improves Drosophila overnutrition-associated pathophysiology phenotypes via a switch from lipid storage to beta-oxidation. | Santoro, Christie; O'Toole, Ashley; Finsel, Pilar; Alvi, Arsalan; Musselman, Laura Palanker | Scientific reports | 35906462 | 2022 Jul 29 |
| Methods to capture proteomic and metabolomic signatures from cerebrospinal fluid and serum of healthy individuals. | Lilley, Laura M; Sanche, Steven; Moore, Shepard C; Salemi, Michelle R; Vu, Dung; Iyer, Srinivas; Hengartner, Nicolas W; Mukundan, Harshini | Scientific reports | 35922450 | 2022 08 03 |
| Native metabolomics identifies the rivulariapeptolide family of protease inhibitors. | Reher, Raphael; Aron, Allegra T; Fajtová, Pavla; Stincone, Paolo; Wagner, Berenike; Pérez-Lorente, Alicia I; Liu, Chenxi; Shalom, Ido Y Ben; Bittremieux, Wout; Wang, Mingxun; Jeong, Kyowon; Matos-Hernandez, Marie L; Alexander, Kelsey L; Caro-Diaz, Eduardo J; Naman, C Benjamin; Scanlan, J H William; Hochban, Phil M M; Diederich, Wibke E; Molina-Santiago, Carlos; Romero, Diego; Selim, Khaled A; Sass, Peter; Brötz-Oesterhelt, Heike; Hughes, Chambers C; Dorrestein, Pieter C; O'Donoghue, Anthony J; Gerwick, William H; Petras, Daniel | Nature communications | 35941113 | 2022 08 08 |
| Single cell spatial analysis reveals the topology of immunomodulatory purinergic signaling in glioblastoma. | Coy, Shannon; Wang, Shu; Stopka, Sylwia A; Lin, Jia-Ren; Yapp, Clarence; Ritch, Cecily C; Salhi, Lisa; Baker, Gregory J; Rashid, Rumana; Baquer, Gerard; Regan, Michael; Khadka, Prasidda; Cole, Kristina A; Hwang, Jaeho; Wen, Patrick Y; Bandopadhayay, Pratiti; Santi, Mariarita; De Raedt, Thomas; Ligon, Keith L; Agar, Nathalie Y R; Sorger, Peter K; Touat, Mehdi; Santagata, Sandro | Nature communications | 35973991 | 2022 08 16 |
| Drug-Initiated Activity Metabolomics Identifies Myristoylglycine as a Potent Endogenous Metabolite for Human Brown Fat Differentiation. | Guijas, Carlos; To, Andrew; Montenegro-Burke, J Rafael; Domingo-Almenara, Xavier; Alipio-Gloria, Zaida; Kok, Bernard P; Saez, Enrique; Alvarez, Nicole H; Johnson, Kristen A; Siuzdak, Gary | Metabolites | 36005620 | 2022 Aug 16 |
| A Micro-Scale Analytical Method for Determining Glycogen Turnover by NMR and FTMS. | Scott, Timothy L; Zhu, Juan; Cassel, Teresa A; Vicente-Muñoz, Sara; Lin, Penghui; Higashi, Richard M; Lane, Andrew N; Fan, Teresa W-M | Metabolites | 36005633 | 2022 Aug 18 |
| Trimester-specific phthalate exposures in pregnancy are associated with circulating metabolites in children. | Goodrich, Jaclyn M; Tang, Lu; Carmona, Yanelli R; Meijer, Jennifer L; Perng, Wei; Watkins, Deborah J; Meeker, John D; Mercado-García, Adriana; Cantoral, Alejandra; Song, Peter X; Téllez-Rojo, Martha M; Peterson, Karen E | PloS one | 36040907 | 2022 |
| How Well Can We Predict Mass Spectra from Structures? Benchmarking Competitive Fragmentation Modeling for Metabolite Identification on Untrained Tandem Mass Spectra. | Bremer, Parker Ladd; Vaniya, Arpana; Kind, Tobias; Wang, Shunyang; Fiehn, Oliver | Journal of chemical information and modeling | 36043939 | 2022 09 12 |
| Metabolite Production in Alkanna tinctoria Links Plant Development with the Recruitment of Individual Members of Microbiome Thriving at the Root-Soil Interface. | Csorba, Cintia; Rodić, Nebojša; Zhao, Yanyan; Antonielli, Livio; Brader, Günter; Vlachou, Angeliki; Tsiokanos, Evangelia; Lalaymia, Ismahen; Declerck, Stéphane; Papageorgiou, Vassilios P; Assimopoulou, Andreana N; Sessitsch, Angela | mSystems | 36069453 | 2022 Oct 26 |
| Lipidomics of cyclophosphamide 4-hydroxylation in patients receiving post-transplant cyclophosphamide. | Navarro, Sandi L; Zheng, Zihan; Randolph, Timothy W; Nakamura, Ryotaro; Sandmaier, Brenda M; Hockenbery, David; McCune, Jeannine S | Clinical and translational science | 36088654 | 2022 Sep 11 |
| Beyond the Ground State: Predicting Electron Ionization Mass Spectra Using Excited-State Molecular Dynamics. | Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver | Journal of chemical information and modeling | 36107950 | 2022 09 26 |
| An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated NMR chemical shifts. | Yesiltepe, Yasemin; Govind, Niranjan; Metz, Thomas O; Renslow, Ryan S | Journal of cheminformatics | 36138446 | 2022 Sep 22 |
| Polarization and β-Glucan Reprogram Immunomodulatory Metabolism in Human Macrophages and Ex Vivo in Human Lung Cancer Tissues. | Fan, Teresa W-M; Daneshmandi, Saeed; Cassel, Teresa A; Uddin, Mohammad B; Sledziona, James; Thompson, Patrick T; Lin, Penghui; Higashi, Richard M; Lane, Andrew N | Journal of immunology (Baltimore, Md. : 1950) | 36150727 | 2022 Sep 23 |
| Enrichment of hepatic glycogen and plasma glucose from H₂18 O informs gluconeogenic and indirect pathway fluxes in naturally feeding mice. | Coelho, Margarida; Mahar, Rohit; Belew, Getachew D; Torres, Alejandra; Barosa, Cristina; Cabral, Fernando; Viegas, Ivan; Gastaldelli, Amalia; Mendes, Vera M; Manadas, Bruno; Jones, John G; Merritt, Matthew E | NMR in biomedicine | 36151589 | 2022 Sep 23 |
| Oxidation of hyperpolarized [1-13 C]pyruvate in isolated rat kidneys. | Sharma, Gaurav; Maptue, Nesmine; Rahim, Mohsin; Mijes, Miriam L Trigo; Hever, Thomas; Wen, Xiaodong; Funk, Alexander M; Malloy, Craig R; Young, Jamey D; Khemtong, Chalermchai | NMR in biomedicine | 36285844 | 2022 Oct 26 |
| NKT cells adopt a glutamine-addicted phenotype to regulate their homeostasis and function. | Kumar, Ajay; Yarosz, Emily L; Andren, Anthony; Zhang, Li; Lyssiotis, Costas A; Chang, Cheong-Hee | Cell reports | 36288696 | 2022 Oct 25 |
| Oxidative stress modulates expression of immune checkpoint genes via activation of AhR signaling. | Kou, Ziyue; Yang, Rui; Lee, Eunji; Cuddapah, Suresh; Choi, Byeong Hyeok; Dai, Wei | Toxicology and applied pharmacology | 36368423 | 2022 Dec 15 |
| OXPHOS promotes apoptotic resistance and cellular persistence in TH17 cells in the periphery and tumor microenvironment. | Hong, Hanna S; Mbah, Nneka E; Shan, Mengrou; Loesel, Kristen; Lin, Lin; Sajjakulnukit, Peter; Correa, Luis O; Andren, Anthony; Lin, Jason; Hayashi, Atsushi; Magnuson, Brian; Chen, Judy; Li, Zhaoheng; Xie, Yuying; Zhang, Li; Goldstein, Daniel R; Carty, Shannon A; Lei, Yu Leo; Opipari, Anthony W; Argüello, Rafael J; Kryczek, Ilona; Kamada, Nobuhiko; Zou, Weiping; Franchi, Luigi; Lyssiotis, Costas A | Science immunology | 36399539 | 2022 Nov 25 |
| Compound Identification Strategies in Mass Spectrometry-Based Metabolomics and Pharmacometabolomics. | Hissong, Rylan; Evans, Kendra R; Evans, Charles R | Handbook of experimental pharmacology | 36409330 | 2023 |
| An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics. | Shaver, Amanda O; Garcia, Brianna M; Gouveia, Goncalo J; Morse, Alison M; Liu, Zihao; Asef, Carter K; Borges, Ricardo M; Leach 3rd, Franklin E; Andersen, Erik C; Amster, I Jonathan; Fernández, Facundo M; Edison, Arthur S; McIntyre, Lauren M | Frontiers in molecular biosciences | 36438654 | 2022 |
| CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics. | Rainey, Markace A; Watson, Chandler A; Asef, Carter K; Foster, Makayla R; Baker, Erin S; Fernández, Facundo M | Analytical chemistry | 36473057 | 2022 Dec 20 |
| An Untargeted Metabolomics Workflow that Scales to Thousands of Samples for Population-Based Studies. | Stancliffe, Ethan; Schwaiger-Haber, Michaela; Sindelar, Miriam; Murphy, Matthew J; Soerensen, Mette; Patti, Gary J | Analytical chemistry | 36475608 | 2022 Dec 20 |
| Implementing the MSFragger Search Engine as a Node in Proteome Discoverer. | Chang, Hui-Yin; Haynes, Sarah E; Yu, Fengchao; Nesvizhskii, Alexey I | Journal of proteome research | 36475762 | 2023 Feb 03 |
| Isolated murine skeletal muscles utilize pyruvate over glucose for oxidation. | Khattri, Ram B; Puglise, Jason; Ryan, Terence E; Walter, Glenn A; Merritt, Matthew E; Barton, Elisabeth R | Metabolomics : Official journal of the Metabolomic Society | 36480060 | 2022 Dec 08 |
| Targeting malaria parasites with novel derivatives of azithromycin. | Burns, Amy L; Sleebs, Brad E; Gancheva, Maria; McLean, Kimberley T; Siddiqui, Ghizal; Venter, Henrietta; Beeson, James G; O'Handley, Ryan; Creek, Darren J; Ma, Shutao; Frölich, Sonja; Goodman, Christopher D; McFadden, Geoffrey I; Wilson, Danny W | Frontiers in cellular and infection microbiology | 36530422 | 2022 |
| Guiding the choice of informatics software and tools for lipidomics research applications. | Ni, Zhixu; Wölk, Michele; Jukes, Geoff; Mendivelso Espinosa, Karla; Ahrends, Robert; Aimo, Lucila; Alvarez-Jarreta, Jorge; Andrews, Simon; Andrews, Robert; Bridge, Alan; Clair, Geremy C; Conroy, Matthew J; Fahy, Eoin; Gaud, Caroline; Goracci, Laura; Hartler, Jürgen; Hoffmann, Nils; Kopczyinki, Dominik; Korf, Ansgar; Lopez-Clavijo, Andrea F; Malik, Adnan; Ackerman, Jacobo Miranda; Molenaar, Martijn R; O'Donovan, Claire; Pluskal, Tomáš; Shevchenko, Andrej; Slenter, Denise; Siuzdak, Gary; Kutmon, Martina; Tsugawa, Hiroshi; Willighagen, Egon L; Xia, Jianguo; O'Donnell, Valerie B; Fedorova, Maria | Nature methods | 36543939 | 2023 Feb |
| Comprehensive investigation of pathway enrichment methods for functional interpretation of LC-MS global metabolomics data. | Lu, Yao; Pang, Zhiqiang; Xia, Jianguo | Briefings in bioinformatics | 36572652 | 2022 Dec 26 |
| Identification of circulating plasma ceramides as a potential sexually dimorphic biomarker of pancreatic cancer-induced cachexia. | Chakedis, Jeffery M; Dillhoff, Mary E; Schmidt, Carl R; Rajasekera, Priyani V; Evans, David C; Williams, Terence M; Guttridge, Denis C; Talbert, Erin E | JCSM rapid communications | 36591536 | 2022 |
| Associations of maternal plasma and umbilical cord plasma metabolomics profiles with birth anthropometric measures. | Yeum, Dabin; Gilbert-Diamond, Diane; Doherty, Brett; Coker, Modupe; Stewart, Delisha; Kirchner, David; McRitchie, Susan; Sumner, Susan; Karagas, Margaret R; Hoen, Anne G | Pediatric research | 36627359 | 2023 Jul |
| Segmented Flow Strategies for Integrating Liquid Chromatography-Mass Spectrometry with Nuclear Magnetic Resonance for Lipidomics. | Lei, Jiajun; Mahar, Rohit; Chang, Mario C; Collins, James; Merritt, Matthew E; Garrett, Timothy J; Yost, Richard A | Analytical chemistry | 36630396 | 2023 Jan 11 |
| Sex-specificity of the C. elegans metabolome. | Burkhardt, Russell N; Artyukhin, Alexander B; Aprison, Erin Z; Curtis, Brian J; Fox, Bennett W; Ludewig, Andreas H; Palomino, Diana Fajardo; Luo, Jintao; Chaturbedi, Amaresh; Panda, Oishika; Wrobel, Chester J J; Baumann, Victor; Portman, Douglas S; Lee, Siu Sylvia; Ruvinsky, Ilya; Schroeder, Frank C | Nature communications | 36658169 | 2023 Jan 19 |
| Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. | Nielson, Felicity F; Kay, Bill; Young, Stephen J; Colby, Sean M; Renslow, Ryan S; Metz, Thomas O | Metabolites | 36677030 | 2023 Jan 09 |
| Generalized tree structure to annotate untargeted metabolomics and stable isotope tracing data. | Li, Shuzhao; Zheng, Shujian | bioRxiv : the preprint server for biology | 36711587 | 2023 Jan 04 |
| A generalized likelihood-based Bayesian approach for scalable joint regression and covariance selection in high dimensions. | Samanta, Srijata; Khare, Kshitij; Michailidis, George | Statistics and computing | 36713060 | 2022 Jun |
| The p97-UBXD8 complex regulates ER-Mitochondria contact sites by altering membrane lipid saturation and composition. | Ganji, Rakesh; Paulo, Joao A; Xi, Yuecheng; Kline, Ian; Zhu, Jiang; Clemen, Christoph S; Weihl, Conrad C; Purdy, John G; Gygi, Steve P; Raman, Malavika | Nature communications | 36746962 | 2023 Feb 06 |
| Quantitative multiple fragment monitoring with enhanced in-source fragmentation/annotation mass spectrometry. | Bernardo-Bermejo, Samuel; Xue, Jingchuan; Hoang, Linh; Billings, Elizabeth; Webb, Bill; Honders, M Willy; Venneker, Sanne; Heijs, Bram; Castro-Puyana, María; Marina, María Luisa; van den Akker, Erik B; Griffioen, Marieke; Siuzdak, Gary; Giera, Martin; Sánchez-López, Elena | Nature protocols | 36755131 | 2023 Apr |
| Cellular transformation promotes the incorporation of docosahexaenoic acid into the endolysosome-specific lipid bis(monoacylglycerol)phosphate in breast cancer. | Berg, Anastasia L; Showalter, Megan R; Kosaisawe, Nont; Hu, Michelle; Stephens, Nathanial C; Sa, Michael; Heil, Hailey; Castro, Noemi; Chen, Jenny J; VanderVorst, Kacey; Wheeler, Madelyn R; Rabow, Zachary; Cajka, Tomas; Albeck, John; Fiehn, Oliver; Carraway 3rd, Kermit L | Cancer letters | 36773796 | 2023 Mar 31 |
| The unknown lipids project: harmonized methods improve compound identification and data reproducibility in an inter-laboratory untargeted lipidomics study. | Shen, Tong; Conway, Ciara; Rempfert, Kaitlin R; Kyle, Jennifer E; Colby, Sean M; Gaul, David A; Habra, Hani; Kong, Fanzhou; Bloodsworth, Kent J; Allen, Douglas; Evans, Bradley S; Du, Xiuxia; Fernandez, Facundo M; Metz, Thomas O; Fiehn, Oliver; Evans, Charles R | bioRxiv : the preprint server for biology | 36778509 | 2023 Feb 03 |
| The TAS1R2 sweet taste receptor regulates skeletal muscle mass and fitness. | Serrano, Joan; Boyd, Jordan; Mason, Carter; Smith, Kathleen R; Karolyi, Katalin; Kondo, Saki; Brown, Ian S; Maurya, Santosh K; Meshram, Nishita N; Serna, Vanida; Gilger, Joshua; Branch, Daniel A; Gardell, Stephen J; Baskin, Kedryn K; Ayala, Julio E; Pratley, Richard E; Goodpaster, Bret H; Coen, Paul M; Kyriazis, George A | Research square | 36798161 | 2023 Feb 09 |
| Four-dimensional trapped ion mobility spectrometry lipidomics for high throughput clinical profiling of human blood samples. | Lerner, Raissa; Baker, Dhanwin; Schwitter, Claudia; Neuhaus, Sarah; Hauptmann, Tony; Post, Julia M; Kramer, Stefan; Bindila, Laura | Nature communications | 36806650 | 2023 Feb 20 |
| Application of Machine Learning to Metabolomic Profile Characterization in Glioblastoma Patients Undergoing Concurrent Chemoradiation. | Aboud, Orwa; Liu, Yin Allison; Fiehn, Oliver; Brydges, Christopher; Fragoso, Ruben; Lee, Han Sung; Riess, Jonathan; Hodeify, Rawad; Bloch, Orin | Metabolites | 36837918 | 2023 Feb 17 |
| Pyruvate dehydrogenase kinase regulates vascular inflammation in atherosclerosis and increases cardiovascular risk. | Forteza, Maria J; Berg, Martin; Edsfeldt, Andreas; Sun, Jangming; Baumgartner, Roland; Kareinen, Ilona; Casagrande, Felipe Beccaria; Hedin, Ulf; Zhang, Song; Vuckovic, Ivan; Dzeja, Petras P; Polyzos, Konstantinos A; Gisterå, Anton; Trauelsen, Mette; Schwartz, Thue W; Dib, Lea; Herrmann, Joerg; Monaco, Claudia; Matic, Ljubica; Gonçalves, Isabel; Ketelhuth, Daniel F J | Cardiovascular research | 36866436 | 2023 Jul 04 |
| The exposome and liver disease - how environmental factors affect liver health. | Barouki, Robert; Samson, Michel; Blanc, Etienne B; Colombo, Massimo; Zucman-Rossi, Jessica; Lazaridis, Konstantinos N; Miller, Gary W; Coumoul, Xavier | Journal of hepatology | 36889360 | 2023 Aug |
| Effects of β-caryophyllene and oxygen availability on cholesterol and fatty acids in breast cancer cells. | Frost, Christopher J; Ramirez-Mata, Andrea; Khattri, Ram B; Merritt, Matthew E; Frost, Susan C | PloS one | 36893152 | 2023 |
| Bayesian kinetic modeling for tracer-based metabolomic data. | Zhang, Xu; Su, Ya; Lane, Andrew N; Stromberg, Arnold J; Fan, Teresa W M; Wang, Chi | BMC bioinformatics | 36949395 | 2023 Mar 22 |
| Recent advances in mass spectrometry-based computational metabolomics. | Ebbels, Timothy M D; van der Hooft, Justin J J; Chatelaine, Haley; Broeckling, Corey; Zamboni, Nicola; Hassoun, Soha; Mathé, Ewy A | Current opinion in chemical biology | 36966702 | 2023 Jun |
| Metabolic dysfunction in obesity is related to impaired suppression of fatty acid release from adipose tissue by insulin. | Schleh, Michael W; Ryan, Benjamin J; Ahn, Cheehoon; Ludzki, Alison C; Varshney, Pallavi; Gillen, Jenna B; Van Pelt, Douglas W; Pitchford, Lisa M; Howton, Suzette M; Rode, Thomas; Chenevert, Thomas L; Hummel, Scott L; Burant, Charles F; Horowitz, Jeffrey F | Obesity (Silver Spring, Md.) | 36988872 | 2023 Mar 29 |
| Generalized Tree Structure to Annotate Untargeted Metabolomics and Stable Isotope Tracing Data. | Li, Shuzhao; Zheng, Shujian | Analytical chemistry | 37018697 | 2023 Apr 18 |
| Comparison of Plasma Metabolome Response to Diets Enriched in Soybean and Partially-Hydrogenated Soybean Oil in Moderately Hypercholesterolemic Adults-A Pilot Study. | Huang, Neil K; Lichtenstein, Alice H; Matuszek, Gregory; Matthan, Nirupa R | Metabolites | 37110133 | 2023 Mar 26 |
| Assessing the impact of boldine on the gastrocnemius using multiomic profiling at 7 and 28 days post-complete spinal cord injury in young male mice. | Potter, Luke A; Toro, Carlos A; Harlow, Lauren; Lavin, Kaleen M; Cardozo, Christopher P; Wende, Adam R; Graham, Zachary A | Physiological genomics | 37125768 | 2023 May 01 |
| Zinc treatment reverses and anti-Zn-regulated miRs suppress esophageal carcinomas in vivo. | Fong, Louise Y; Huebner, Kay; Jing, Ruiyan; Smalley, Karl J; Brydges, Christopher R; Fiehn, Oliver; Farber, John L; Croce, Carlo M | Proceedings of the National Academy of Sciences of the United States of America | 37155893 | 2023 May 16 |
| Trichloroethylene Metabolite S-(1,2-Dichlorovinyl)-l-cysteine Stimulates Changes in Energy Metabolites and Amino Acids in the BeWo Human Placental Trophoblast Model during Syncytialization. | Su, Anthony L; Harris, Sean M; Elkin, Elana R; Karnovsky, Alla; Colacino, Justin; Loch-Caruso, Rita Karen | Chemical research in toxicology | 37162359 | 2023 Jun 19 |
| Noncovalent Host-Guest Complexes of Artemisinin with α-, β-, and γ- Cyclodextrin Examined by Structural Mass Spectrometry Strategies. | Zlibut, Emanuel; May, Jody C; Wei, Yansheng; Gessmann, Dennis; Wood, Constance S; Bernat, Bryan A; Pugh, Teresa E; Palmer-Jones, Lauren; Cosquer, Ronan P; Dybeck, Eric; McLean, John A | Analytical chemistry | 37184072 | 2023 May 30 |
| Glycerophospholipid Analysis of Optic Nerve Regeneration Models Indicate Potential Membrane Order Changes Associated with the Lipidomic Shifts. | Meehan, Sean D; Neag, Emily; Bhattacharya, Sanjoy K | Journal of ocular pharmacology and therapeutics : the official journal of the Association for Ocular Pharmacology and Therapeutics | 37192491 | 2023 Oct |
| Phospholipase D3 degrades mitochondrial DNA to regulate nucleotide signaling and APP metabolism. | Van Acker, Zoë P; Perdok, Anika; Hellemans, Ruben; North, Katherine; Vorsters, Inge; Cappel, Cedric; Dehairs, Jonas; Swinnen, Johannes V; Sannerud, Ragna; Bretou, Marine; Damme, Markus; Annaert, Wim | Nature communications | 37225734 | 2023 May 24 |
| A pilot metabolomic study of drug interaction with the immune response to seasonal influenza vaccination. | Siddiqa, Amnah; Wang, Yating; Thapa, Maheshwor; Martin, Dominique E; Cadar, Andreia N; Bartley, Jenna M; Li, Shuzhao | NPJ vaccines | 37308481 | 2023 Jun 12 |
| Chaperonin CCT controls extracellular vesicle production and cell metabolism through kinesin dynamics. | Rojas-Gómez, Amelia; Dosil, Sara G; Chichón, Francisco J; Fernández-Gallego, Nieves; Ferrarini, Alessia; Calvo, Enrique; Calzada-Fraile, Diego; Requena, Silvia; Otón, Joaquin; Serrano, Alvaro; Tarifa, Rocio; Arroyo, Montserrat; Sorrentino, Andrea; Pereiro, Eva; Vázquez, Jesus; Valpuesta, José M; Sánchez-Madrid, Francisco; Martín-Cófreces, Noa B | Journal of extracellular vesicles | 37328936 | 2023 Jun |
| Defining diurnal fluctuations in mouse choroid plexus and CSF at high molecular, spatial, and temporal resolution. | Fame, Ryann M; Kalugin, Peter N; Petrova, Boryana; Xu, Huixin; Soden, Paul A; Shipley, Frederick B; Dani, Neil; Grant, Bradford; Pragana, Aja; Head, Joshua P; Gupta, Suhasini; Shannon, Morgan L; Chifamba, Fortunate F; Hawks-Mayer, Hannah; Vernon, Amanda; Gao, Fan; Zhang, Yong; Holtzman, Michael J; Heiman, Myriam; Andermann, Mark L; Kanarek, Naama; Lipton, Jonathan O; Lehtinen, Maria K | Nature communications | 37349305 | 2023 Jun 22 |
| High body temperature increases gut microbiota-dependent host resistance to influenza A virus and SARS-CoV-2 infection. | Nagai, Minami; Moriyama, Miyu; Ishii, Chiharu; Mori, Hirotake; Watanabe, Hikaru; Nakahara, Taku; Yamada, Takuji; Ishikawa, Dai; Ishikawa, Takamasa; Hirayama, Akiyoshi; Kimura, Ikuo; Nagahara, Akihito; Naito, Toshio; Fukuda, Shinji; Ichinohe, Takeshi | Nature communications | 37391427 | 2023 Jun 30 |
| ATP10A promotes endothelial cell insulin sensitivity and protects against diet-induced dyslipidemia in female mice. | Norris, Adriana C; Yazlovitskaya, Eugenia M; Zhu, Lin; Rose, Bailey S; Mansueto, Alex; Gibson-Corley, Katherine N; May, Jody C; McLean, John A; Stafford, John M; Graham, Todd R | bioRxiv : the preprint server for biology | 37398141 | 2023 Jun 27 |
| Diet high in linoleic acid dysregulates the intestinal endocannabinoid system and increases susceptibility to colitis in Mice. | Deol, Poonamjot; Ruegger, Paul; Logan, Geoffrey D; Shawki, Ali; Li, Jiang; Mitchell, Jonathan D; Yu, Jacqueline; Piamthai, Varadh; Radi, Sarah H; Hasnain, Sana; Borkowski, Kamil; Newman, John W; McCole, Declan F; Nair, Meera G; Hsiao, Ansel; Borneman, James; Sladek, Frances M | Gut microbes | 37400966 | 2023 |
| Skewing cPLA2α activity toward oxoeicosanoid production promotes neutrophil N2 polarization, wound healing, and the response to sepsis. | Maus, Kenneth D; Stephenson, Daniel J; Macknight, H Patrick; Vu, Ngoc T; Hoeferlin, L Alexis; Kim, Minjung; Diegelmann, Robert F; Xie, Xiujie; Chalfant, Charles E | Science signaling | 37433004 | 2023 Jul 11 |
| Trackable and scalable LC-MS metabolomics data processing using asari. | Li, Shuzhao; Siddiqa, Amnah; Thapa, Maheshwor; Chi, Yuanye; Zheng, Shujian | Nature communications | 37433854 | 2023 Jul 11 |
| Lactate-dependent transcriptional regulation controls mammalian eye morphogenesis. | Takata, Nozomu; Miska, Jason M; Morgan, Marc A; Patel, Priyam; Billingham, Leah K; Joshi, Neha; Schipma, Matthew J; Dumar, Zachary J; Joshi, Nikita R; Misharin, Alexander V; Embry, Ryan B; Fiore, Luciano; Gao, Peng; Diebold, Lauren P; McElroy, Gregory S; Shilatifard, Ali; Chandel, Navdeep S; Oliver, Guillermo | Nature communications | 37452018 | 2023 Jul 14 |
| Hydroxyproline metabolism enhances IFN-γ-induced PD-L1 expression and inhibits autophagic flux. | Spangenberg, Stephan H; Palermo, Amelia; Gazaniga, Nathalia R; Martínez-Peña, Francisco; Guijas, Carlos; Chin, Emily N; Rinschen, Markus M; Sander, Philipp N; Webb, Bill; Pereira, Laura E; Jia, Ying; Meitz, Lance; Siuzdak, Gary; Lairson, Luke L | Cell chemical biology | 37467751 | 2023 Sep 21 |
| The BinDiscover database: a biology-focused meta-analysis tool for 156,000 GC-TOF MS metabolome samples. | Bremer, Parker Ladd; Wohlgemuth, Gert; Fiehn, Oliver | Journal of cheminformatics | 37475020 | 2023 Jul 20 |
| The stability of the myelinating oligodendrocyte transcriptome is regulated by the nuclear lamina. | Pruvost, Mathilde; Patzig, Julia; Yattah, Camila; Selcen, Ipek; Hernandez, Marylens; Park, Hye-Jin; Moyon, Sarah; Liu, Shibo; Morioka, Malia S; Shopland, Lindsay; Al-Dalahmah, Osama; Bendl, Jaroslav; Fullard, John F; Roussos, Panos; Goldman, James; He, Ye; Dupree, Jeffrey L; Casaccia, Patrizia | Cell reports | 37515770 | 2023 Aug 29 |
| Integrating the exposome into a multi-omic research framework. | Miller, Gary W | Exposome | 37538530 | 2021 |
| Exposome: a new field, a new journal. | Miller, Gary W | Exposome | 37538531 | 2021 |
| Spatially resolved metabolomics and isotope tracing reveal dynamic metabolic responses of dentate granule neurons with acute stimulation. | Miller, Anne; York, Elisa; Stopka, Sylwia; Martínez-François, Juan; Hossain, Md Amin; Baquer, Gerard; Regan, Michael; Agar, Nathalie; Yellen, Gary | Research square | 37546759 | 2023 Jul 25 |
| Rapid and Automated Ab Initio Metabolite Collisional Cross Section Prediction from SMILES Input. | Das, Susanta; Dinpazhoh, Laleh; Tanemura, Kiyoto Aramis; Merz Jr, Kenneth M | Journal of chemical information and modeling | 37548575 | 2023 Aug 28 |
| Clinical Efficacy of ONC201 in H3K27M-Mutant Diffuse Midline Gliomas Is Driven by Disruption of Integrated Metabolic and Epigenetic Pathways. | Venneti, Sriram; Kawakibi, Abed Rahman; Ji, Sunjong; Waszak, Sebastian M; Sweha, Stefan R; Mota, Mateus; Pun, Matthew; Deogharkar, Akash; Chung, Chan; Tarapore, Rohinton S; Ramage, Samuel; Chi, Andrew; Wen, Patrick Y; Arrillaga-Romany, Isabel; Batchelor, Tracy T; Butowski, Nicholas A; Sumrall, Ashley; Shonka, Nicole; Harrison, Rebecca A; de Groot, John; Mehta, Minesh; Hall, Matthew D; Daghistani, Doured; Cloughesy, Timothy F; Ellingson, Benjamin M; Beccaria, Kevin; Varlet, Pascale; Kim, Michelle M; Umemura, Yoshie; Garton, Hugh; Franson, Andrea; Schwartz, Jonathan; Jain, Rajan; Kachman, Maureen; Baum, Heidi; Burant, Charles F; Mottl, Sophie L; Cartaxo, Rodrigo T; John, Vishal; Messinger, Dana; Qin, Tingting; Peterson, Erik; Sajjakulnukit, Peter; Ravi, Karthik; Waugh, Alyssa; Walling, Dustin; Ding, Yujie; Xia, Ziyun; Schwendeman, Anna; Hawes, Debra; Yang, Fusheng; Judkins, Alexander R; Wahl, Daniel; Lyssiotis, Costas A; de la Nava, Daniel; Alonso, Marta M; Eze, Augustine; Spitzer, Jasper; Schmidt, Susanne V; Duchatel, Ryan J; Dun, Matthew D; Cain, Jason E; Jiang, Li; Stopka, Sylwia A; Baquer, Gerard; Regan, Michael S; Filbin, Mariella G; Agar, Nathalie Y R; Zhao, Lili; Kumar-Sinha, Chandan; Mody, Rajen; Chinnaiyan, Arul; Kurokawa, Ryo; Pratt, Drew; Yadav, Viveka N; Grill, Jacques; Kline, Cassie; Mueller, Sabine; Resnick, Adam; Nazarian, Javad; Allen, Joshua E; Odia, Yazmin; Gardner, Sharon L; Koschmann, Carl | Cancer discovery | 37584601 | 2023 Nov 01 |
| Plasma Fatty Acid Biomarkers of Dairy Consumption Are Associated with Sex-Dependent Effects on Metabolic Syndrome Components in Mexican Adolescents. | Trejo-Reyes, Rebeca; Cantoral, Alejandra; Lamadrid-Figueroa, Hector; Betanzos-Robledo, Larissa; Téllez-Rojo, Martha María; Peterson, Karen E; Baylin, Ana; Jansen, Erica C | Annals of nutrition & metabolism | 37607502 | 2023 |
| Comprehensive isotopomer analysis of glutamate and aspartate in small tissue samples. | Cai, Feng; Bezwada, Divya; Cai, Ling; Mahar, Rohit; Wu, Zheng; Chang, Mario C; Pachnis, Panayotis; Yang, Chendong; Kelekar, Sherwin; Gu, Wen; Brooks, Bailey; Ko, Bookyung; Vu, Hieu S; Mathews, Thomas P; Zacharias, Lauren G; Martin-Sandoval, Misty; Do, Duyen; Oaxaca, K Celeste; Jin, Eunsook S; Margulis, Vitaly; Malloy, Craig R; Merritt, Matthew E; DeBerardinis, Ralph J | Cell metabolism | 37611583 | 2023 Oct 03 |
| High-intensity aerobic, but not resistance or combined, exercise training improves both cardiometabolic health and skeletal muscle mitochondrial dynamics. | Ruegsegger, Gregory N; Pataky, Mark W; Simha, Suvyaktha; Robinson, Matthew M; Klaus, Katherine A; Nair, K Sreekumaran | Journal of applied physiology (Bethesda, Md. : 1985) | 37616334 | 2023 Oct 01 |
| Boldine Alters Serum Lipidomic Signatures after Acute Spinal Cord Transection in Male Mice. | Graham, Zachary A; Siedlik, Jacob A; Toro, Carlos A; Harlow, Lauren; Cardozo, Christopher P | International journal of environmental research and public health | 37623175 | 2023 Aug 17 |
| Differences in the Stool Metabolome between Vegans and Omnivores: Analyzing the NIST Stool Reference Material. | Cumeras, Raquel; Shen, Tong; Valdiviez, Luis; Tippins, Zakery; Haffner, Bennett D; Fiehn, Oliver | Metabolites | 37623865 | 2023 Aug 07 |
| SMetaS: A Sample Metadata Standardizer for Metabolomics. | Bremer, Parker Ladd; Fiehn, Oliver | Metabolites | 37623884 | 2023 Aug 12 |
| Denoising Autoencoder Normalization for Large-Scale Untargeted Metabolomics by Gas Chromatography-Mass Spectrometry. | Zhang, Ying; Fan, Sili; Wohlgemuth, Gert; Fiehn, Oliver | Metabolites | 37623887 | 2023 Aug 13 |
| Sexual Dimorphism of the Mouse Plasma Metabolome Is Associated with Phenotypes of 30 Gene Knockout Lines. | Zhang, Ying; Barupal, Dinesh K; Fan, Sili; Gao, Bei; Zhu, Chao; Flenniken, Ann M; McKerlie, Colin; Nutter, Lauryl M J; Lloyd, Kevin C Kent; Fiehn, Oliver | Metabolites | 37623890 | 2023 Aug 15 |
| Automatic Assignment of Molecular Ion Species to Elemental Formulas in Gas Chromatography/Methane Chemical Ionization Accurate Mass Spectrometry. | Wang, Shunyang; Valdiviez, Luis; Ye, Honglian; Fiehn, Oliver | Metabolites | 37623905 | 2023 Aug 19 |
| The fate of mitochondria during platelet activation. | Grichine, Alexei; Jacob, Shancy; Eckly, Anita; Villaret, Joran; Joubert, Clotilde; Appaix, Florence; Pezet, Mylène; Ribba, Anne-Sophie; Denarier, Eric; Mazzega, Jacques; Rinckel, Jean-Yves; Lafanechère, Laurence; Elena-Herrmann, Bénédicte; Rowley, Jesse W; Sadoul, Karin | Blood advances | 37624769 | 2023 Oct 24 |
| Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment. | Aboud, Orwa; Liu, Yin; Dahabiyeh, Lina; Abuaisheh, Ahmad; Li, Fangzhou; Aboubechara, John Paul; Riess, Jonathan; Bloch, Orin; Hodeify, Rawad; Tagkopoulos, Ilias; Fiehn, Oliver | Biomedicines | 37626757 | 2023 Aug 13 |
| System-based integrated metabolomics and microRNA analysis identifies potential molecular alterations in human X-linked cerebral adrenoleukodystrophy brain. | Poisson, Laila M; Kaur, Navtej; Felicella, Michelle M; Singh, Jaspreet | Human molecular genetics | 37656183 | 2023 Nov 17 |
| Arabidopsis ACYL CARRIER PROTEIN4 and RHOMBOID LIKE10 act independently in chloroplast phosphatidate synthesis. | Xu, Yang; Kambhampati, Shrikaar; Morley, Stewart A; Cook, Ron; Froehlich, John; Allen, Doug K; Benning, Christoph | Plant physiology | 37658850 | 2023 Nov 22 |
| Both moderate- and high-intensity exercise training increase intramyocellular lipid droplet abundance and modify myocellular distribution in adults with obesity. | Schleh, Michael W; Ahn, Cheehoon; Ryan, Benjamin J; Chugh, Olivia K; Luker, Austin T; Luker, Kathryn E; Gillen, Jenna B; Ludzki, Alison C; Van Pelt, Douglas W; Pitchford, Lisa M; Zhang, Tao; Rode, Thomas; Howton, Suzette M; Burant, Charles F; Horowitz, Jeffrey F | American journal of physiology. Endocrinology and metabolism | 37729021 | 2023 Nov 01 |
| Flash entropy search to query all mass spectral libraries in real time. | Li, Yuanyue; Fiehn, Oliver | Nature methods | 37735567 | 2023 Oct |
| Spatially resolved metabolomics and isotope tracing reveal dynamic metabolic responses of dentate granule neurons with acute stimulation. | Miller, Anne; York, Elisa M; Stopka, Sylwia A; Martínez-François, Juan Ramón; Hossain, Md Amin; Baquer, Gerard; Regan, Michael S; Agar, Nathalie Y R; Yellen, Gary | Nature metabolism | 37798473 | 2023 Oct |
| MYC is a regulator of androgen receptor inhibition-induced metabolic requirements in prostate cancer. | Crowell, Preston D; Giafaglione, Jenna M; Jones, Anthony E; Nunley, Nicholas M; Hashimoto, Takao; Delcourt, Amelie M L; Petcherski, Anton; Agrawal, Raag; Bernard, Matthew J; Diaz, Johnny A; Heering, Kylie Y; Huang, Rong Rong; Low, Jin-Yih; Matulionis, Nedas; Navone, Nora M; Ye, Huihui; Zoubeidi, Amina; Christofk, Heather R; Rettig, Matthew B; Reiter, Robert E; Haffner, Michael C; Boutros, Paul C; Shirihai, Orian S; Divakaruni, Ajit S; Goldstein, Andrew S | Cell reports | 37815914 | 2023 Oct 31 |
| Complete elimination of estrogen receptor α by PROTAC estrogen receptor α degrader ERD-148 in breast cancer cells. | Hu, Biao; Hu, Jiantao | Breast cancer research and treatment | 37847455 | 2023 Oct 17 |
| LIPID MAPS: update to databases and tools for the lipidomics community. | Conroy, Matthew J; Andrews, Robert M; Andrews, Simon; Cockayne, Lauren; Dennis, Edward A; Fahy, Eoin; Gaud, Caroline; Griffiths, William J; Jukes, Geoff; Kolchin, Maksim; Mendivelso, Karla; Lopez-Clavijo, Andrea F; Ready, Caroline; Subramaniam, Shankar; O'Donnell, Valerie B | Nucleic acids research | 37855672 | 2024 Jan 05 |
| Effect of altered production and storage of dopamine on development and behavior in C. elegans. | Lee, Irene; Knickerbocker, Ava C; Depew, Charlotte Rose; Martin, Elizabeth; Dicent, Jocelyn; Miller, Gary W; Bucher, Meghan L | bioRxiv : the preprint server for biology | 37873331 | 2023 Oct 10 |
| TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes. | Carpenter, Charlie M; Gillenwater, Lucas; Bowler, Russell; Kechris, Katerina; Ghosh, Debashis | BMC bioinformatics | 37880571 | 2023 Oct 25 |
| Program for Integration and Rapid Analysis of Mass Isotopomer Distributions (PIRAMID). | Gomez, Javier D; Wall, Martha L; Rahim, Mohsin; Kambhampati, Shrikaar; Evans, Bradley S; Allen, Doug K; Antoniewicz, Maciek R; Young, Jamey D | Bioinformatics (Oxford, England) | 37889279 | 2023 Nov 01 |
| Tubular dysfunction impairs renal excretion of pseudouridine in diabetic kidney disease. | Mathew, Anna V; Kayampilly, Pradeep; Byun, Jaeman; Nair, Viji; Afshinnia, Farsad; Chai, Biaoxin; Brosius 3rd, Frank C; Kretzler, Matthias; Pennathur, Subramaniam | American journal of physiology. Renal physiology | 37916286 | 2024 Jan 01 |
| METLIN-CCS: an ion mobility spectrometry collision cross section database. | Baker, Erin S; Hoang, Corey; Uritboonthai, Winnie; Heyman, Heino M; Pratt, Brian; MacCoss, Michael; MacLean, Brendan; Plumb, Robert; Aisporna, Aries; Siuzdak, Gary | Nature methods | 37932399 | 2023 Dec |
| Postprandial Metabolite Profiles and Risk of Prediabetes in Young People: A Longitudinal Multicohort Study. | Goodrich, Jesse A; Wang, Hongxu; Walker, Douglas I; Lin, Xiangping; Hu, Xin; Alderete, Tanya L; Chen, Zhanghua; Valvi, Damaskini; Baumert, Brittney O; Rock, Sarah; Berhane, Kiros; Gilliland, Frank D; Goran, Michael I; Jones, Dean P; Conti, David V; Chatzi, Leda | Diabetes care | 37971952 | 2024 Jan 01 |
| IL-1β-mediated adaptive reprogramming of endogenous human cardiac fibroblasts to cells with immune features during fibrotic remodeling. | Siamwala, Jamila H; Pagano, Francesco S; Dubielecka, Patrycja M; Ivey, Malina J; Guirao-Abad, Jose Pedro; Zhao, Alexander; Chen, Sonja; Granston, Haley; Jeong, Jae Yun; Rounds, Sharon; Kanisicak, Onur; Sadayappan, Sakthivel; Gilbert, Richard J | Communications biology | 38001239 | 2023 Nov 25 |
| Reverse metabolomics for the discovery of chemical structures from humans. | Gentry, Emily C; Collins, Stephanie L; Panitchpakdi, Morgan; Belda-Ferre, Pedro; Stewart, Allison K; Carrillo Terrazas, Marvic; Lu, Hsueh-Han; Zuffa, Simone; Yan, Tingting; Avila-Pacheco, Julian; Plichta, Damian R; Aron, Allegra T; Wang, Mingxun; Jarmusch, Alan K; Hao, Fuhua; Syrkin-Nikolau, Mashette; Vlamakis, Hera; Ananthakrishnan, Ashwin N; Boland, Brigid S; Hemperly, Amy; Vande Casteele, Niels; Gonzalez, Frank J; Clish, Clary B; Xavier, Ramnik J; Chu, Hiutung; Baker, Erin S; Patterson, Andrew D; Knight, Rob; Siegel, Dionicio; Dorrestein, Pieter C | Nature | 38052229 | 2024 Feb |
| Current Practices in LC-MS Untargeted Metabolomics: A Scoping Review on the Use of Pooled Quality Control Samples. | Broeckling, Corey D; Beger, Richard D; Cheng, Leo L; Cumeras, Raquel; Cuthbertson, Daniel J; Dasari, Surendra; Davis, W Clay; Dunn, Warwick B; Evans, Anne Marie; Fernández-Ochoa, Alvaro; Gika, Helen; Goodacre, Royston; Goodman, Kelli D; Gouveia, Goncalo J; Hsu, Ping-Ching; Kirwan, Jennifer A; Kodra, Dritan; Kuligowski, Julia; Lan, Renny Shang-Lun; Monge, María Eugenia; Moussa, Laura W; Nair, Sindhu G; Reisdorph, Nichole; Sherrod, Stacy D; Ulmer Holland, Candice; Vuckovic, Dajana; Yu, Li-Rong; Zhang, Bo; Theodoridis, Georgios; Mosley, Jonathan D | Analytical chemistry | 38055671 | 2023 Dec 26 |
| Exposure to perfluoroalkyl substances and longitudinal changes in bone mineral density in adolescents and young adults: A multi-cohort study. | Beglarian, Emily; Costello, Elizabeth; Walker, Douglas I; Wang, Hongxu; Alderete, Tanya L; Chen, Zhanghua; Valvi, Damaskini; Baumert, Brittney O; Rock, Sarah; Rubbo, Bruna; Aung, Max T; Gilliland, Frank D; Goran, Michael I; Jones, Dean P; McConnell, Rob; Eckel, Sandrah P; Conti, David V; Goodrich, Jesse A; Chatzi, Lida | Environmental research | 38061983 | 2023 Dec 06 |
| Modeling transcriptional regulation of the cell cycle using a novel cybernetic-inspired approach. | Raja, Rubesh; Khanum, Sana; Aboulmouna, Lina; Maurya, Mano R; Gupta, Shakti; Subramaniam, Shankar; Ramkrishna, Doraiswami | Biophysical journal | 38102827 | 2024 Jan 16 |
| Comparing Self-Reported Dietary Intake to Provided Diet during a Randomized Controlled Feeding Intervention: A Pilot Study. | Casey, James L; Meijer, Jennifer L; IglayReger, Heidi B; Ball, Sarah C; Han-Markey, Theresa L; Braun, Thomas M; Burant, Charles F; Peterson, Karen E | Dietetics (Basel, Switzerland) | 38107624 | 2023 Dec |
| HNF4α isoforms regulate the circadian balance between carbohydrate and lipid metabolism in the liver. | Deans, Jonathan R; Deol, Poonamjot; Titova, Nina; Radi, Sarah H; Vuong, Linh M; Evans, Jane R; Pan, Songqin; Fahrmann, Johannes; Yang, Jun; Hammock, Bruce D; Fiehn, Oliver; Fekry, Baharan; Eckel-Mahan, Kristin; Sladek, Frances M | Frontiers in endocrinology | 38111711 | 2023 |
| Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. | Bittremieux, Wout; Avalon, Nicole E; Thomas, Sydney P; Kakhkhorov, Sarvar A; Aksenov, Alexander A; Gomes, Paulo Wender P; Aceves, Christine M; Caraballo-Rodríguez, Andrés Mauricio; Gauglitz, Julia M; Gerwick, William H; Huan, Tao; Jarmusch, Alan K; Kaddurah-Daouk, Rima F; Kang, Kyo Bin; Kim, Hyun Woo; Kondić, Todor; Mannochio-Russo, Helena; Meehan, Michael J; Melnik, Alexey V; Nothias, Louis-Felix; O'Donovan, Claire; Panitchpakdi, Morgan; Petras, Daniel; Schmid, Robin; Schymanski, Emma L; van der Hooft, Justin J J; Weldon, Kelly C; Yang, Heejung; Xing, Shipei; Zemlin, Jasmine; Wang, Mingxun; Dorrestein, Pieter C | Nature communications | 38123557 | 2023 Dec 20 |
| Determinants of Meal-Induced Changes in Circulating FFA Epoxides, Diols, and Diol-to-Epoxide Ratios as Indices of Soluble Epoxide Hydrolase Activity. | Oh, Young Taek; Yang, Jun; Stefanovski, Darko; Hammock, Bruce; Youn, Jang H | International journal of molecular sciences | 38139180 | 2023 Dec 11 |
| Mitofusin-2 Regulates Platelet Mitochondria and Function. | Jacob, Shancy; Kosaka, Yasuhiro; Bhatlekar, Seema; Denorme, Frederik; Benzon, Haley; Moody, Alexandra; Moody, Victoria; Tugolukova, Emilia A; Hull, Grayson; Kishimoto, Nina; Manne, Bhanu K; Guo, Li; Souvenir, Rhonda; Seliger, Brayden J; Eustes, Alicia S; Hoerger, Kelly; Tolley, Neal D; Fatahian, Amir N; Boudina, Sihem; Christiani, David C; Wei, Yongyue; Ju, Can; Campbell, Robert A; Rondina, Matthew T; Abel, E Dale; Bray, Paul F; Weyrich, Andrew S; Rowley, Jesse W | Circulation research | 38156445 | 2024 Jan 19 |
| Gut microbiota and metabolites in estrus cycle and their changes in a menopausal transition rat model with typical neuroendocrine aging. | Dai, Ruoxi; Huang, Jianqin; Cui, Liyuan; Sun, Ruiqi; Qiu, Xuemin; Wang, Yan; Sun, Yan | Frontiers in endocrinology | 38161977 | 2023 |
| Metabolic reprogramming by histone deacetylase inhibition preferentially targets NRF2-activated tumors. | Karagiannis, Dimitris; Wu, Warren; Li, Albert; Hayashi, Makiko; Chen, Xiao; Yip, Michaela; Mangipudy, Vaibhav; Xu, Xinjing; Sánchez-Rivera, Francisco J; Soto-Feliciano, Yadira M; Ye, Jiangbin; Papagiannakopoulos, Thales; Lu, Chao | Cell reports | 38165806 | 2024 Jan 23 |
| Deficiency of the lipid flippase ATP10A causes diet-induced dyslipidemia in female mice. | Norris, Adriana C; Yazlovitskaya, Eugenia M; Zhu, Lin; Rose, Bailey S; May, Jody C; Gibson-Corley, Katherine N; McLean, John A; Stafford, John M; Graham, Todd R | Scientific reports | 38172157 | 2024 Jan 03 |
| Matrix Linear Models for connecting metabolite composition to individual characteristics. | Farage, Gregory; Zhao, Chenhao; Choi, Hyo Young; Garrett, Timothy J; Kechris, Katerina; Elam, Marshall B; Sen, Śaunak | bioRxiv : the preprint server for biology | 38187579 | 2023 Dec 20 |
| Intratumoral Biosynthesis of Gold Nanoclusters by Pancreatic Cancer to Overcome Delivery Barriers to Radiosensitization. | Schwartz-Duval, Aaron S; Mackeyev, Yuri; Mahmud, Iqbal; Lorenzi, Philip L; Gagea, Mihai; Krishnan, Sunil; Sokolov, Konstantin V | ACS nano | 38206058 | 2024 Jan 23 |
| PCA-Plus: Enhanced principal component analysis with illustrative applications to batch effects and their quantitation. | Zhang, Nianxiang; Casasent, Tod D; Casasent, Anna K; Kumar, Shwetha V; Wakefield, Chris; Broom, Bradley M; Weinstein, John N; Akbani, Rehan | bioRxiv : the preprint server for biology | 38260566 | 2024 Jan 03 |
| Metabolic abnormalities in the bone marrow cells of young offspring born to obese mothers. | Alina, Maloyan; Phillips, Elysse; Alharithi, Yem; Kadam, Leena; Coussens, Lisa; Kumar, Sushil | Research square | 38313293 | 2024 Jan 16 |
| Associations of dietary intake and longitudinal measures of per- and polyfluoroalkyl substances (PFAS) in predominantly Hispanic young Adults: A multicohort study. | Hampson, Hailey E; Costello, Elizabeth; Walker, Douglas I; Wang, Hongxu; Baumert, Brittney O; Valvi, Damaskini; Rock, Sarah; Jones, Dean P; Goran, Michael I; Gilliland, Frank D; Conti, David V; Alderete, Tanya L; Chen, Zhanghua; Chatzi, Leda; Goodrich, Jesse A | Environment international | 38316574 | 2024 Mar |
| Exploring the interplay between running exercises, microbial diversity, and tryptophan metabolism along the microbiota-gut-brain axis. | Vazquez-Medina, Alejandra; Rodriguez-Trujillo, Nicole; Ayuso-Rodriguez, Kiara; Marini-Martinez, Fabiana; Angeli-Morales, Roberto; Caussade-Silvestrini, Gerardo; Godoy-Vitorino, Filipa; Chorna, Nataliya | Frontiers in microbiology | 38318337 | 2024 |
| SIMPEL: using stable isotopes to elucidate dynamics of context specific metabolism. | Kambhampati, Shrikaar; Hubbard, Allen H; Koley, Somnath; Gomez, Javier D; Marsolais, Frédéric; Evans, Bradley S; Young, Jamey D; Allen, Doug K | Communications biology | 38347116 | 2024 Feb 12 |
| Metabolomic and genetic architecture of gestational diabetes subtypes. | Lee, Kristen; Kuang, Alan; Bain, James R; Hayes, M Geoffrey; Muehlbauer, Michael J; Ilkayeva, Olga R; Newgard, Christopher B; Powe, Camille E; Hivert, Marie-France; Scholtens, Denise M; Lowe Jr, William L | Diabetologia | 38367033 | 2024 May |
| Common data models to streamline metabolomics processing and annotation, and implementation in a Python pipeline. | Mitchell, Joshua M; Chi, Yuanye; Thapa, Maheshwor; Pang, Zhiqiang; Xia, Jianguo; Li, Shuzhao | bioRxiv : the preprint server for biology | 38405981 | 2024 Feb 14 |
