Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Authors | Journal | PubMedID | Publication Date |
|---|---|---|---|---|
| Generation of accurate, expandable phylogenomic trees with uDance. | Balaban, Metin; Jiang, Yueyu; Zhu, Qiyun; McDonald, Daniel; Knight, Rob; Mirarab, Siavash | Nature biotechnology | 37500914 | 2024 May |
| Objective Determination of Eating Occasion Timing: Combining Self-Report, Wrist Motion, and Continuous Glucose Monitoring to Detect Eating Occasions in Adults With Prediabetes and Obesity. | Popp, Collin J; Wang, Chan; Hoover, Adam; Gomez, Louis A; Curran, Margaret; St-Jules, David E; Barua, Souptik; Sevick, Mary Ann; Kleinberg, Samantha | Journal of diabetes science and technology | 37747075 | 2024 Mar |
| Transforming Big Data into AI-ready data for nutrition and obesity research. | Thomas, Diana M; Knight, Rob; Gilbert, Jack A; Cornelis, Marilyn C; Gantz, Marie G; Burdekin, Kate; Cummiskey, Kevin; Sumner, Susan C J; Pathmasiri, Wimal; Sazonov, Edward; Gabriel, Kelley Pettee; Dooley, Erin E; Green, Mark A; Pfluger, Andrew; Kleinberg, Samantha | Obesity (Silver Spring, Md.) | 38426232 | 2024 May |
| Vulnerability or Resiliency? A Two-Wave Panel Analysis of Social Network Factors Associated with Glycemic Levels among Mexican Immigrants in the Bronx, NYC, Before and During COVID-19. | Flórez, Karen R; Hwang, Neil S; Hernández, Maria; Verdaguer, Sandra; Derose, Kathryn P; de la Haye, Kayla | Journal of urban health : bulletin of the New York Academy of Medicine | 38347274 | 2024 Feb |
| How the Timing of Annual COVID-19 Vaccination of Nursing Home Residents and Staff Affects Its Value. | Bartsch, Sarah M; Weatherwax, Colleen; Wasserman, Michael R; Chin, Kevin L; Martinez, Marie F; Velmurugan, Kavya; Singh, Raveena D; John, Danielle C; Heneghan, Jessie L; Gussin, Gabrielle M; Scannell, Sheryl A; Tsintsifas, Alexandra C; O'Shea, Kelly J; Dibbs, Alexis M; Leff, Bruce; Huang, Susan S; Lee, Bruce Y | Journal of the American Medical Directors Association | 38432644 | 2024 Apr |
| A Systems Map of the Challenges of Climate Communication. | Heneghan, Jessie; John, Danielle C; Bartsch, Sarah M; Piltch-Loeb, Rachael; Gilbert, Christine; Kass, Dan; Chin, Kevin L; Dibbs, Alexis; Shah, Tej D; O'Shea, Kelly J; Scannell, Sheryl A; Martinez, Marie F; Lee, Bruce Y | Journal of health communication | 38845202 | 2024 Jun 03 |
| Inflammatory dietary potential is associated with vitamin depletion and gut microbial dysbiosis in early pregnancy. | Alvernaz, Suzanne A; Wenzel, Elizabeth S; Nagelli, Unnathi; Pezley, Lacey B; LaBomascus, Bazil; Gilbert, Jack A; Maki, Pauline M; Tussing-Humphreys, Lisa; Peñalver Bernabé, Beatriz | medRxiv : the preprint server for health sciences | 38076865 | 2024 Jan 16 |
| Increased Genetic Risk for β-Cell Failure Is Associated With β-Cell Function Decline in People With Prediabetes. | Billings, Liana K; Jablonski, Kathleen A; Pan, Qing; Florez, Jose C; Franks, Paul W; Goldberg, Ronald B; Hivert, Marie-France; Kahn, Steven E; Knowler, William C; Lee, Christine G; Merino, Jordi; Huerta-Chagoya, Alicia; Mercader, Josep M; Raghavan, Sridharan; Shi, Zhuqing; Srinivasan, Shylaja; Xu, Jianfeng; Udler, Miriam S | Diabetes | 38758294 | 2024 Aug 01 |
| The potential epidemiologic, clinical, and economic value of a universal coronavirus vaccine: a modelling study. | Bartsch, Sarah M; O'Shea, Kelly J; John, Danielle C; Strych, Ulrich; Bottazzi, Maria Elena; Martinez, Marie F; Ciciriello, Allan; Chin, Kevin L; Weatherwax, Colleen; Velmurugan, Kavya; Heneghan, Jessie; Scannell, Sheryl A; Hotez, Peter J; Lee, Bruce Y | EClinicalMedicine | 38545093 | 2024 Feb |
| Greengenes2 unifies microbial data in a single reference tree. | McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T; Nicolaou, Giorgia; Parks, Donovan H; Karst, Søren M; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob | Nature biotechnology | 37500913 | 2024 May |
| Accuracy of energy and nutrient intake estimation versus observed intake using 4 technology-assisted dietary assessment methods: a randomized crossover feeding study. | Whitton, Clare; Collins, Clare E; Mullan, Barbara A; Rollo, Megan E; Dhaliwal, Satvinder S; Norman, Richard; Boushey, Carol J; Delp, Edward J; Zhu, Fengqing; McCaffrey, Tracy A; Kirkpatrick, Sharon I; Pollard, Christina M; Healy, Janelle D; Hassan, Amira; Garg, Shivangi; Atyeo, Paul; Mukhtar, Syed Aqif; Kerr, Deborah A | The American journal of clinical nutrition | 38710447 | 2024 Jul |
| D-optimal designs for two-variable logistic regression model with restricted design space. | Zhai, Yi; Wang, Chengci; Lin, Hui-Yi; Fang, Zhide | Communications in statistics: theory and methods | 38835746 | 2024 |
| Health and Economic Value of Eliminating Socioeconomic Disparities in US Youth Physical Activity. | Powell-Wiley, Tiffany M; Martinez, Marie F; Heneghan, Jessie; Weatherwax, Colleen; Osei Baah, Foster; Velmurugan, Kavya; Chin, Kevin L; Ayers, Colby; Cintron, Manuel A; Ortiz-Whittingham, Lola R; Sandler, Dana; Sharda, Sonal; Whitley, Meredith; Bartsch, Sarah M; O'Shea, Kelly J; Tsintsifas, Alexandra; Dibbs, Alexis; Scannell, Sheryl A; Lee, Bruce Y | JAMA health forum | 38488779 | 2024 Mar 01 |
| What Is the Economic Benefit of Annual COVID-19 Vaccination From the Adult Individual Perspective? | Bartsch, Sarah M; O'Shea, Kelly J; Weatherwax, Colleen; Strych, Ulrich; Velmurugan, Kavya; John, Danielle C; Bottazzi, Maria Elena; Hussein, Mustafa; Martinez, Marie F; Chin, Kevin L; Ciciriello, Allan; Heneghan, Jessie; Dibbs, Alexis; Scannell, Sheryl A; Hotez, Peter J; Lee, Bruce Y | The Journal of infectious diseases | 38581432 | 2024 Aug 16 |
| Benefits of Meeting the Healthy People 2030 Youth Sports Participation Target. | Martinez, Marie F; Weatherwax, Colleen; Piercy, Katrina; Whitley, Meredith A; Bartsch, Sarah M; Heneghan, Jessie; Fox, Martin; Bowers, Matthew T; Chin, Kevin L; Velmurugan, Kavya; Dibbs, Alexis; Smith, Alan L; Pfeiffer, Karin A; Farrey, Tom; Tsintsifas, Alexandra; Scannell, Sheryl A; Lee, Bruce Y | American journal of preventive medicine | 38416089 | 2024 May |
| Cost-effectiveness of severe acute respiratory coronavirus virus 2 (SARS-CoV-2) testing and isolation strategies in nursing homes. | Bartsch, Sarah M; Weatherwax, Colleen; Martinez, Marie F; Chin, Kevin L; Wasserman, Michael R; Singh, Raveena D; Heneghan, Jessie L; Gussin, Gabrielle M; Scannell, Sheryl A; White, Cameron; Leff, Bruce; Huang, Susan S; Lee, Bruce Y | Infection control and hospital epidemiology | 38356377 | 2024 Jun |
| Inflammatory Dietary Potential Is Associated with Vitamin Depletion and Gut Microbial Dysbiosis in Early Pregnancy. | Alvernaz, Suzanne A; Wenzel, Elizabeth S; Nagelli, Unnathi; Pezley, Lacey B; LaBomascus, Bazil; Gilbert, Jack A; Maki, Pauline M; Tussing-Humphreys, Lisa; Peñalver Bernabé, Beatriz | Nutrients | 38612969 | 2024 Mar 24 |
| Effect of mobile food environments on fast food visits. | García Bulle Bueno, Bernardo; Horn, Abigail L; Bell, Brooke M; Bahrami, Mohsen; Bozkaya, Burçin; Pentland, Alex; de la Haye, Kayla; Moro, Esteban | Nature communications | 38480685 | 2024 Mar 14 |
| Precision Nutrition for Management of Cardiovascular Disease Risk during Menopause. | Cabre, Hannah E; Woolf, Emily K; Redman, Leanne M | Lifestyle genomics | 39047690 | 2024 |
| Maintaining face mask use before and after achieving different COVID-19 vaccination coverage levels: a modelling study. | Bartsch, Sarah M; O'Shea, Kelly J; Chin, Kevin L; Strych, Ulrich; Ferguson, Marie C; Bottazzi, Maria Elena; Wedlock, Patrick T; Cox, Sarah N; Siegmund, Sheryl S; Hotez, Peter J; Lee, Bruce Y | The Lancet. Public health | 35276093 | 2022 Mar 08 |
| The potential epidemiologic, clinical, and economic impact of requiring schools to offer Physical Education (PE) classes in Mexico City. | Ferguson, Marie C; Bartsch, Sarah M; O'Shea, Kelly J; Thomas, Diana M; Moran, Timothy H; Solano Gonzales, Mario; Wedlock, Patrick T; Nyathi, Sindiso; Morgan, Matthew; Chin, Kevin L; Scannell, Sheryl A; Hertenstein, Daniel L; Domino, Molly; Ranganath, Kushi; Adam, Atif; Tomaino Fraser, Katherine; Fraser, Adam; Lee, Bruce Y | PloS one | 35522673 | 2022 |
| Precision nutrition in diabetes: when population-based dietary advice gets personal. | Merino, Jordi | Diabetologia | 35593923 | 2022 Nov |
| Cancer systems epidemiology: Overcoming misconceptions and integrating systems approaches into cancer research. | Mabry, Patricia L; Pronk, Nicolaas P; Amos, Christopher I; Witte, John S; Wedlock, Patrick T; Bartsch, Sarah M; Lee, Bruce Y | PLoS medicine | 35714096 | 2022 06 |
| Predicting energy intake in adults who are dieting and exercising. | Gerving, Corey; Lasater, Robert; Starling, James; Ostendorf, Danielle M; Redman, Leanne M; Estabrooks, Chad; Cummiskey, Kevin; Antonetti, Vincent; Thomas, Diana M | International journal of obesity (2005) | 35987955 | 2022 Aug 20 |
| The Impact of a Place-Tailored Digital Health App Promoting Exercise Classes on African American Women's Physical Activity and Obesity: Simulation Study. | Powell-Wiley, Tiffany M; Martinez, Marie F; Tamura, Kosuke; Neally, Sam J; O'Shea, Kelly J; Curlin, Kaveri; Albarracin, Yardley; Vijayakumar, Nithya P; Morgan, Matthew; Ortiz-Chaparro, Erika; Bartsch, Sarah M; Osei Baah, Foster; Wedlock, Patrick T; Ortiz-Whittingham, Lola R; Scannell, Sheryl; Potharaju, Kameswari A; Randall, Samuel; Solano Gonzales, Mario; Domino, Molly; Ranganath, Kushi; Hertenstein, Daniel; Syed, Rafay; Weatherwax, Colleen; Lee, Bruce Y | Journal of medical Internet research | 35994313 | 2022 08 22 |
| Research gaps and opportunities in precision nutrition: an NIH workshop report. | Lee, Bruce Y; Ordovás, José M; Parks, Elizabeth J; Anderson, Cheryl A M; Barabási, Albert-László; Clinton, Steven K; de la Haye, Kayla; Duffy, Valerie B; Franks, Paul W; Ginexi, Elizabeth M; Hammond, Kristian J; Hanlon, Erin C; Hittle, Michael; Ho, Emily; Horn, Abigail L; Isaacson, Richard S; Mabry, Patricia L; Malone, Susan; Martin, Corby K; Mattei, Josiemer; Meydani, Simin Nikbin; Nelson, Lorene M; Neuhouser, Marian L; Parent, Brendan; Pronk, Nicolaas P; Roche, Helen M; Saria, Suchi; Scheer, Frank A J L; Segal, Eran; Sevick, Mary Ann; Spector, Tim D; Van Horn, Linda B; Varady, Krista A; Voruganti, Venkata Saroja; Martinez, Marie F | The American journal of clinical nutrition | 36055772 | 2022 Sep 02 |
| Precision Nutrition: Recent Advances in Obesity. | Voruganti, V Saroja | Physiology (Bethesda, Md.) | 36125787 | 2023 Jan 01 |
| A Reassessment of the Causal Effects of Dysglycemia on Atherosclerotic and Thrombotic Events. | Merino, Jordi | Diabetes | 36126207 | 2022 10 01 |
| Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions. | Narunsky-Haziza, Lian; Sepich-Poore, Gregory D; Livyatan, Ilana; Asraf, Omer; Martino, Cameron; Nejman, Deborah; Gavert, Nancy; Stajich, Jason E; Amit, Guy; González, Antonio; Wandro, Stephen; Perry, Gili; Ariel, Ruthie; Meltser, Arnon; Shaffer, Justin P; Zhu, Qiyun; Balint-Lahat, Nora; Barshack, Iris; Dadiani, Maya; Gal-Yam, Einav N; Patel, Sandip Pravin; Bashan, Amir; Swafford, Austin D; Pilpel, Yitzhak; Knight, Rob; Straussman, Ravid | Cell | 36179670 | 2022 Sep 29 |
| Analyzing rare mutations in metagenomes assembled using long and accurate reads. | Fedarko, Marcus W; Kolmogorov, Mikhail; Pevzner, Pavel A | Genome research | 36418060 | 2022 |
| Machine learning modeling practices to support the principles of AI and ethics in nutrition research. | Thomas, Diana M; Kleinberg, Samantha; Brown, Andrew W; Crow, Mason; Bastian, Nathaniel D; Reisweber, Nicholas; Lasater, Robert; Kendall, Thomas; Shafto, Patrick; Blaine, Raymond; Smith, Sarah; Ruiz, Daniel; Morrell, Christopher; Clark, Nicholas | Nutrition & diabetes | 36456550 | 2022 Dec 02 |
| Concordance of Chronic Kidney Disease Stage and Metformin Management Using CKD-EPI 2021 Race-Free Equation vs CKD-EPI 2009 Equation to Estimate Glomerular Filtration Rate. | Maynard, Robert D; Korpi-Steiner, Nichole; Cotten, Steven W | Clinical chemistry | 36508321 | 2023 Feb 01 |
| Ten simple rules for using public biological data for your research. | Oza, Vishal H; Whitlock, Jordan H; Wilk, Elizabeth J; Uno-Antonison, Angelina; Wilk, Brandon; Gajapathy, Manavalan; Howton, Timothy C; Trull, Austyn; Ianov, Lara; Worthey, Elizabeth A; Lasseigne, Brittany N | PLoS computational biology | 36602970 | 2023 Jan |
| Natural language processing: fast forwarding research to the "good stuff": Natural language processing for nutrition. | Lindquist, Joseph M | The American journal of clinical nutrition | 36872013 | 2023 Mar |
| Psychedelics for Medicinal Use: How Will This Alter the Collective Laboratory Consciousness? | Cotten, Steven W; Strathmann, Frederick G; Barrett, Frederick S; Labay, Laura; Mullally, James; Sherwood, Alexander M; Wiegand, Frank | Clinical chemistry | 36881769 | 2023 Apr 03 |
| Translating digital anthropometry measurements obtained from different 3D body image scanners. | Ashby, Nicholas; Jake LaPorte, G; Richardson, Daniel; Scioletti, Michael; Heymsfield, Steven B; Shepherd, John A; McGurk, Michael; Bustillos, Brenda; Gist, Nicholas; Thomas, Diana M | European journal of clinical nutrition | 37165098 | 2023 Sep |
| Genetic predisposition to macronutrient preference and workplace food choices. | Merino, Jordi; Dashti, Hassan S; Levy, Douglas E; Del Rocío Sevilla-González, Magdalena; Hivert, Marie-France; Porneala, Bianca C; Saxena, Richa; Thorndike, Anne N | Molecular psychiatry | 37217678 | 2023 May 23 |
| The Need for Systems Approaches for Precision Communications in Public Health. | Lee, Bruce Y; Greene, Danielle; Scannell, Sheryl A; McLaughlin, Christopher; Martinez, Marie F; Heneghan, Jessie L; Chin, Kevin L; Zheng, Xia; Li, Ruobing; Lindenfeld, Laura; Bartsch, Sarah M | Journal of health communication | 37390012 | 2023 Apr 07 |
| Greengenes2 unifies microbial data in a single reference tree. | McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T; Nicolaou, Giorgia; Parks, Donovan H; Karst, Søren M; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havuli | Nature biotechnology | 37500913 | 2023 Jul 27 |
| Generation of accurate, expandable phylogenomic trees with uDance. | Balaban, Metin; Jiang, Yueyu; Zhu, Qiyun; McDonald, Daniel; Knight, Rob; Mirarab, Siavash | Nature biotechnology | 37500914 | 2023 Jul 27 |
| Objective Determination of Eating Occasion Timing (OREO): Combining Self-Report, Wrist Motion, and Continuous Glucose Monitoring to Detect Eating Occasions in Adults With Pre-Diabetes and Obesity. | Popp, Collin J; Wang, Chan; Hoover, Adam; Gomez, Louis A; Curran, Margaret; St-Jules, David E; Barua, Souptik; Sevick, Mary Ann; Kleinberg, Samantha | Journal of diabetes science and technology | 37747075 | 2023 Sep 25 |
| Heterogeneous effects on type 2 diabetes and cardiovascular outcomes of genetic variants and traits associated with fasting insulin. | Manning, Alisa; Sevilla-González, Magdalena; Smith, Kirk; Wang, Ningyuan; Jensen, Aubrey; Litkowski, Elizabeth; Kim, Hyunkyung; DiCorpo, Daniel; Westerman, Kenneth; Cui, Jinrui; Liu, Ching-Ti; Yu, Chenglong; McNeil, John; Lacaze, Paul; Chang, Kyong-Mi; Tsao, Phil; Phillips, Lawrence; Goodarzi, Mark; Sladek, Rob; Rotter, Jerome; Dupuis, Josee; Florez, Jose; Merino, Jordi; Meigs, James; Zhou, Jin; Raghavan, Sridharan; Udler, Miriam | Research square | 37790568 | 2023 Sep 19 |
| Impact of individual and environmental factors on dietary or lifestyle interventions to prevent type 2 diabetes development: a systematic review. | Bodhini, Dhanasekaran; Morton, Robert W; Santhakumar, Vanessa; Nakabuye, Mariam; Pomares-Millan, Hugo; Clemmensen, Christoffer; Fitzpatrick, Stephanie L; Guasch-Ferre, Marta; Pankow, James S; Ried-Larsen, Mathias; Franks, Paul W; ADA/EASD PMDI; Tobias, Deirdre K; Merino, Jordi; Mohan, Viswanathan; Loos, Ruth J F | Communications medicine | 37794109 | 2023 Oct 05 |
| Second international consensus report on gaps and opportunities for the clinical translation of precision diabetes medicine. | Tobias, Deirdre K; Merino, Jordi; Ahmad, Abrar; Aiken, Catherine; Benham, Jamie L; Bodhini, Dhanasekaran; Clark, Amy L; Colclough, Kevin; Corcoy, Rosa; Cromer, Sara J; Duan, Daisy; Felton, Jamie L; Francis, Ellen C; Gillard, Pieter; Gingras, Véronique; Ga | Nature medicine | 37794253 | 2023 Oct |
| Population mobility data provides meaningful indicators of fast food intake and diet-related diseases in diverse populations. | Horn, Abigail L; Bell, Brooke M; Bulle Bueno, Bernardo García; Bahrami, Mohsen; Bozkaya, Burçin; Cui, Yan; Wilson, John P; Pentland, Alex; Moro, Esteban; de la Haye, Kayla | NPJ digital medicine | 37968446 | 2023 Nov 15 |
| Vulnerability or Resiliency? A Two-Wave Panel Analysis of Social Network Factors Associated with Glycemic Levels among Mexican Immigrants in the Bronx, NYC, Before and During COVID-19. | Flórez, Karen R; Hwang, Neil S; Hernández, Maria; Verdaguer, Sandra; Derose, Kathryn P; de la Haye, Kayla | Journal of urban health : bulletin of the New York Academy of Medicine | 38347274 | 2024 Feb 12 |
| Cost-effectiveness of severe acute respiratory coronavirus virus 2 (SARS-CoV-2) testing and isolation strategies in nursing homes. | Bartsch, Sarah M; Weatherwax, Colleen; Martinez, Marie F; Chin, Kevin L; Wasserman, Michael R; Singh, Raveena D; Heneghan, Jessie L; Gussin, Gabrielle M; Scannell, Sheryl A; White, Cameron; Leff, Bruce; Huang, Susan S; Lee, Bruce Y | Infection control and hospital epidemiology | 38356377 | 2024 Feb 15 |
| Transforming Big Data into AI-ready data for nutrition and obesity research. | Thomas, Diana M; Knight, Rob; Gilbert, Jack A; Cornelis, Marilyn C; Gantz, Marie G; Burdekin, Kate; Cummiskey, Kevin; Sumner, Susan C J; Pathmasiri, Wimal; Sazonov, Edward; Gabriel, Kelley Pettee; Dooley, Erin E; Green, Mark A; Pfluger, Andrew; Kleinberg, Samantha | Obesity (Silver Spring, Md.) | 38426232 | 2024 Mar 01 |
