Publications Search by Program
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
Title | Authors | Journal | PubMedID | Publication Date |
---|---|---|---|---|
Structural biology of cellular machines. | Chiu, Wah; Baker, Matthew L; Almo, Steven C | Trends in cell biology | 16459078 | 2006 Mar |
Refinement of protein structures by iterative comparative modeling and CryoEM density fitting. | Topf, Maya; Baker, Matthew L; Marti-Renom, Marc A; Chiu, Wah; Sali, Andrej | Journal of molecular biology | 16490207 | 2006 Apr 14 |
Genetic parts to program bacteria. | Voigt, Christopher A | Current opinion in biotechnology | 16978856 | 2006 Oct |
Lateral organization in lipid-cholesterol mixed bilayers. | Pandit, Sagar A; Khelashvili, George; Jakobsson, Eric; Grama, Ananth; Scott, H L | Biophysical journal | 17071661 | 2007 Jan 15 |
The cPLA2 C2alpha domain in solution: structure and dynamics of its Ca2+-activated and cation-free states. | Varma, Sameer; Jakobsson, Eric | Biophysical journal | 17085504 | 2007 Feb 1 |
An expanded conformation of single-ring GroEL-GroES complex encapsulates an 86 kDa substrate. | Chen, Dong-Hua; Song, Jiu-Li; Chuang, David T; Chiu, Wah; Ludtke, Steven J | Structure (London, England : 1993) | 17098196 | 2006 Nov |
Force as a facilitator of integrin conformational changes during leukocyte arrest on blood vessels and antigen-presenting cells. | Alon, Ronen; Dustin, Michael L | Immunity | 17241958 | 2007 Jan |
Global DNA methylation profiling reveals silencing of a secreted form of Epha7 in mouse and human germinal center B-cell lymphomas. | Dawson, D W; Hong, J S; Shen, R R; French, S W; Troke, J J; Wu, Y-Z; Chen, S-S; Gui, D; Regelson, M; Marahrens, Y; Morse 3rd, H C; Said, J; Plass, C; Teitell, M A | Oncogene | 17260020 | 2007 Jun 21 |
Modifying the function of DNA repair nanomachines for therapeutic benefit. | Dynan, William S; Takeda, Yoshihiko; Li, Shuyi | Nanomedicine : nanotechnology, biology, and medicine | 17292118 | 2006 Jun |
Mechanism of actin network attachment to moving membranes: barbed end capture by N-WASP WH2 domains. | Co, Carl; Wong, Derek T; Gierke, Sarah; Chang, Vicky; Taunton, Jack | Cell | 17350575 | 2007 Mar 9 |
Targeted transgene expression in muller glia of normal and diseased retinas using lentiviral vectors. | Greenberg, Kenneth P; Geller, Scott F; Schaffer, David V; Flannery, John G | Investigative ophthalmology & visual science | 17389520 | 2007 Apr |
Viral nanomotors for packaging of dsDNA and dsRNA. | Guo, Peixuan; Lee, Tae Jin | Molecular microbiology | 17501915 | 2007 May |
Improved plasmalogen synthesis using organobarium intermediates. | Van den Bossche, Jeroen; Shin, Junhwa; Thompson, David H | The Journal of organic chemistry | 17539687 | 2007 Jun 22 |
TORC2 regulates germinal center repression of the TCL1 oncoprotein to promote B cell development and inhibit transformation. | Kuraishy, Ali I; French, Samuel W; Sherman, Mara; Herling, Marco; Jones, Dan; Wall, Randolph; Teitell, Michael A | Proceedings of the National Academy of Sciences of the United States of America | 17548807 | 2007 Jun 12 |
Functional atlas of the integrin adhesome. | Zaidel-Bar, Ronen; Itzkovitz, Shalev; Ma'ayan, Avi; Iyengar, Ravi; Geiger, Benjamin | Nature cell biology | 17671451 | 2007 Aug |
Protein repellent properties of covalently attached PEG coatings on nanostructured SiO(2)-based interfaces. | Blummel, Jacques; Perschmann, Nadine; Aydin, Daniel; Drinjakovic, Jovana; Surrey, Thomas; Lopez-Garcia, Monica; Kessler, Horst; Spatz, Joachim P | Biomaterials | 17697710 | 2007 Nov |
Environmental signal integration by a modular AND gate. | Anderson, J Christopher; Voigt, Christopher A; Arkin, Adam P | Molecular systems biology | 17700541 | 2007 |
Design of multi-specificity in protein interfaces. | Humphris, Elisabeth L; Kortemme, Tanja | PLoS computational biology | 17722975 | 2007 Aug |
Force-induced unfolding of fibronectin in the extracellular matrix of living cells. | Smith, Michael L; Gourdon, Delphine; Little, William C; Kubow, Kristopher E; Eguiluz, R Andresen; Luna-Morris, Sheila; Vogel, Viola | PLoS biology | 17914904 | 2007 Oct 2 |
Characterization of protein hubs by inferring interacting motifs from protein interactions. | Aragues, Ramon; Sali, Andrej; Bonet, Jaume; Marti-Renom, Marc A; Oliva, Baldo | PLoS computational biology | 17941705 | 2007 Sep |
Imaging and tracking of tat peptide-conjugated quantum dots in living cells: new insights into nanoparticle uptake, intracellular transport, and vesicle shedding. | Ruan, Gang; Agrawal, Amit; Marcus, Adam I; Nie, Shuming | Journal of the American Chemical Society | 17983227 | 2007 Nov 28 |
Human polynucleotide phosphorylase: location matters. | Chen, Hsiao-Wen; Koehler, Carla M; Teitell, Michael A | Trends in cell biology | 17983748 | 2007 Dec |
Crystallographic conformers of actin in a biologically active bundle of filaments. | Cong, Yao; Topf, Maya; Sali, Andrej; Matsudaira, Paul; Dougherty, Matthew; Chiu, Wah; Schmid, Michael F | Journal of molecular biology | 18022194 | 2008 Jan 11 |
Modular software platform for low-dose electron microscopy and tomography. | Marsh, Michael P; Chang, Juan T; Booth, Christopher R; Liang, Nathan L; Schmid, Michael F; Chiu, Wah | Journal of microscopy | 18045333 | 2007 Dec |
Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution. | Schroder, Gunnar F; Brunger, Axel T; Levitt, Michael | Structure (London, England : 1993) | 18073112 | 2007 Dec |
Regulating enzymatic activity with a photoswitchable affinity label. | Harvey, Jessica H; Trauner, Dirk | Chembiochem : a European journal of chemical biology | 18085544 | 2008 Jan 25 |
K+/Na+ selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints. | Varma, Sameer; Sabo, Dubravko; Rempe, Susan B | Journal of molecular biology | 18155244 | 2008 Feb 8 |
Expanding the substrate tolerance of biotin ligase through exploration of enzymes from diverse species. | Slavoff, Sarah A; Chen, Irwin; Choi, Yoon-Aa; Ting, Alice Y | Journal of the American Chemical Society | 18171066 | 2008 Jan 30 |
Non-Brownian diffusion of membrane molecules in nanopatterned supported lipid bilayers. | Tsai, Jones; Sun, Eileen; Gao, Yuan; Hone, James C; Kam, Lance C | Nano letters | 18205424 | 2008 Feb |
Induction and relaxation dynamics of the regulatory network controlling the type III secretion system encoded within Salmonella pathogenicity island 1. | Temme, Karsten; Salis, Howard; Tullman-Ercek, Danielle; Levskaya, Anselm; Hong, Soon-Ho; Voigt, Christopher A | Journal of molecular biology | 18242639 | 2008 Mar 14 |
Aptamer-based optical probes with separated molecular recognition and signal transduction modules. | Li, Na; Ho, Chih-Ming | Journal of the American Chemical Society | 18247609 | 2008 Feb 27 |
Protein structure fitting and refinement guided by cryo-EM density. | Topf, Maya; Lasker, Keren; Webb, Ben; Wolfson, Haim; Chiu, Wah; Sali, Andrej | Structure (London, England : 1993) | 18275820 | 2008 Feb |
End-point targeted molecular dynamics: large-scale conformational changes in potassium channels. | Mashl, R J; Jakobsson, E | Biophysical journal | 18310251 | 2008 Jun |
Super-resolution imaging by random adsorbed molecule probes. | Wu, Dongmin; Liu, Zhaowei; Sun, Cheng; Zhang, Xiang | Nano letters | 18321073 | 2008 Apr |
Inhibition mechanism of the acetylcholine receptor by alpha-neurotoxins as revealed by normal-mode dynamics. | Samson, Abraham O; Levitt, Michael | Biochemistry | 18327915 | 2008 Apr 1 |
De novo backbone trace of GroEL from single particle electron cryomicroscopy. | Ludtke, Steven J; Baker, Matthew L; Chen, Dong-Hua; Song, Jiu-Li; Chuang, David T; Chiu, Wah | Structure (London, England : 1993) | 18334219 | 2008 Mar |
Closed-loop control of cellular functions using combinatory drugs guided by a stochastic search algorithm. | Wong, Pak Kin; Yu, Fuqu; Shahangian, Arash; Cheng, Genhong; Sun, Ren; Ho, Chih-Ming | Proceedings of the National Academy of Sciences of the United States of America | 18356295 | 2008 Apr 1 |
Chromatin dynamics and gene positioning. | Kumaran, R Ileng; Thakar, Rajika; Spector, David L | Cell | 18358806 | 2008 Mar 21 |
Crystallization and preliminary X-ray diffraction analysis of recombinant hepatitis E virus-like particle. | Wang, Che-Yen; Miyazaki, Naoyuki; Yamashita, Tetsuo; Higashiura, Akifumi; Nakagawa, Atsushi; Li, Tian-Cheng; Takeda, Naokazu; Xing, Li; Hjalmarsson, Erik; Friberg, Claes; Liou, Der-Ming; Sung, Yen-Jen; Tsukihara, Tomitake; Matsuura, Yoshiharu; Miyamura, T | Acta crystallographica. Section F, Structural biology and crystallization communications | 18391436 | 2008 Apr 1 |
Understanding and re-engineering nucleoprotein machines to cure human disease. | Dynan, William; Takeda, Yoshihiko; Roth, David; Bao, Gang | Nanomedicine (London, England) | 18393669 | 2008 Feb |
Structure of the mammalian 80S ribosome at 8.7 A resolution. | Chandramouli, Preethi; Topf, Maya; Menetret, Jean-Francois; Eswar, Narayanan; Cannone, Jamie J; Gutell, Robin R; Sali, Andrej; Akey, Christopher W | Structure (London, England : 1993) | 18400176 | 2008 Apr |
Assay to mechanically tune and optically probe fibrillar fibronectin conformations from fully relaxed to breakage. | Little, William C; Smith, Michael L; Ebneter, Urs; Vogel, Viola | Matrix biology : journal of the International Society for Matrix Biology | 18417335 | 2008 Jun |
Multiple conformations of E. coli Hsp90 in solution: insights into the conformational dynamics of Hsp90. | Krukenberg, Kristin A; Forster, Friedrich; Rice, Luke M; Sali, Andrej; Agard, David A | Structure (London, England : 1993) | 18462680 | 2008 May |
Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks. | Neves, Susana R; Tsokas, Panayiotis; Sarkar, Anamika; Grace, Elizabeth A; Rangamani, Padmini; Taubenfeld, Stephen M; Alberini, Cristina M; Schaff, James C; Blitzer, Robert D; Moraru, Ion I; Iyengar, Ravi | Cell | 18485874 | 2008 May 16 |
Bioconjugated quantum dots for in vivo molecular and cellular imaging. | Smith, Andrew M; Duan, Hongwei; Mohs, Aaron M; Nie, Shuming | Advanced drug delivery reviews | 18495291 | 2008 Aug 17 |
Micropatterning of costimulatory ligands enhances CD4+ T cell function. | Shen, Keyue; Thomas, V Kaye; Dustin, Michael L; Kam, Lance C | Proceedings of the National Academy of Sciences of the United States of America | 18505845 | 2008 Jun 3 |
Capping protein increases the rate of actin-based motility by promoting filament nucleation by the Arp2/3 complex. | Akin, Orkun; Mullins, R Dyche | Cell | 18510928 | 2008 May 30 |
Modular assembly of chimeric phi29 packaging RNAs that support DNA packaging. | Fang, Yun; Shu, Dan; Xiao, Feng; Guo, Peixuan; Qin, Peter Z | Biochemical and biophysical research communications | 18514064 | 2008 Aug 8 |
Cholesterol packing around lipids with saturated and unsaturated chains: a simulation study. | Pandit, Sagar A; Chiu, See-Wing; Jakobsson, Eric; Grama, Ananth; Scott, H L | Langmuir : the ACS journal of surfaces and colloids | 18517226 | 2008 Jun 1 |
Controlling Brownian motion of single protein molecules and single fluorophores in aqueous buffer. | Cohen, Adam E; Moerner, W E | Optics express | 18545398 | 2008 May 12 |
Induction of cell polarization and migration by a gradient of nanoscale variations in adhesive ligand spacing. | Arnold, Marco; Hirschfeld-Warneken, Vera C; Lohmuller, Theobald; Heil, Patrick; Blummel, Jacques; Cavalcanti-Adam, Elisabetta A; Lopez-Garcia, Monica; Walther, Paul; Kessler, Horst; Geiger, Benjamin; Spatz, Joachim P | Nano letters | 18558788 | 2008 Jul |
Cell adhesion and polarisation on molecularly defined spacing gradient surfaces of cyclic RGDfK peptide patches. | Hirschfeld-Warneken, Vera C; Arnold, Marco; Cavalcanti-Adam, Ada; Lopez-Garcia, Monica; Kessler, Horst; Spatz, Joachim P | European journal of cell biology | 18572273 | 2008 Sep |
Location and flexibility of the unique C-terminal tail of Aquifex aeolicus co-chaperonin protein 10 as derived by cryo-electron microscopy and biophysical techniques. | Chen, Dong-Hua; Luke, Kathryn; Zhang, Junjie; Chiu, Wah; Wittung-Stafshede, Pernilla | Journal of molecular biology | 18588898 | 2008 Sep 5 |
Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel. | Serysheva, Irina I; Ludtke, Steven J; Baker, Matthew L; Cong, Yao; Topf, Maya; Eramian, David; Sali, Andrej; Hamilton, Susan L; Chiu, Wah | Proceedings of the National Academy of Sciences of the United States of America | 18621707 | 2008 Jul 15 |
Colloid-guided assembly of oriented 3D neuronal networks. | Pautot, Sophie; Wyart, Claire; Isacoff, Ehud Y | Nature methods | 18641658 | 2008 Aug |
Limits of filopodium stability. | Pronk, Sander; Geissler, Phillip L; Fletcher, Daniel A | Physical review letters | 18643706 | 2008 Jun 27 |
Bayesian approach to network modularity. | Hofman, Jake M; Wiggins, Chris H | Physical review letters | 18643711 | 2008 Jun 27 |
The pathogen protein EspF(U) hijacks actin polymerization using mimicry and multivalency. | Sallee, Nathan A; Rivera, Gonzalo M; Dueber, John E; Vasilescu, Dan; Mullins, R Dyche; Mayer, Bruce J; Lim, Wendell A | Nature | 18650806 | 2008 Aug 21 |
Protein-nanocrystal conjugates support a single filament polymerization model in R1 plasmid segregation. | Choi, Charina L; Claridge, Shelley A; Garner, Ethan C; Alivisatos, A Paul; Mullins, R Dyche | The Journal of biological chemistry | 18658133 | 2008 Oct 17 |
Conformational flexibility facilitates self-assembly of complex DNA nanostructures. | Zhang, Chuan; Su, Min; He, Yu; Zhao, Xin; Fang, Ping-an; Ribbe, Alexander E; Jiang, Wen; Mao, Chengde | Proceedings of the National Academy of Sciences of the United States of America | 18667705 | 2008 Aug 5 |
Cooperativity in adhesion cluster formation during initial cell adhesion. | Selhuber-Unkel, Christine; Lopez-Garcia, Monica; Kessler, Horst; Spatz, Joachim P | Biophysical journal | 18689459 | 2008 Dec |
Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies. | Forster, Friedrich; Webb, Benjamin; Krukenberg, Kristin A; Tsuruta, Hiro; Agard, David A; Sali, Andrej | Journal of molecular biology | 18694757 | 2008 Oct 17 |
Strand and nucleotide-dependent ATPase activity of gp16 of bacterial virus phi29 DNA packaging motor. | Lee, Tae Jin; Zhang, Hui; Liang, Dan; Guo, Peixuan | Virology | 18701124 | 2008 Oct 10 |
A role for confined water in chaperonin function. | England, Jeremy L; Lucent, Del; Pande, Vijay S | Journal of the American Chemical Society | 18710231 | 2008 Sep 10 |
New aldehyde tag sequences identified by screening formylglycine generating enzymes in vitro and in vivo. | Rush, Jason S; Bertozzi, Carolyn R | Journal of the American Chemical Society | 18722427 | 2008 Sep 17 |
Capture and alignment of phi29 viral particles in sub-40 nanometer porous alumina membranes. | Moon, Jeong-Mi; Akin, Demir; Xuan, Yi; Ye, Peide D; Guo, Peixuan; Bashir, Rashid | Biomedical microdevices | 18770041 | 2009 Feb |
Hydrophobic surfaces for enhanced differentiation of embryonic stem cell-derived embryoid bodies. | Valamehr, Bahram; Jonas, Steven J; Polleux, Julien; Qiao, Rong; Guo, Shuling; Gschweng, Eric H; Stiles, Bangyan; Kam, Korey; Luo, Tzy-Jiun M; Witte, Owen N; Liu, Xin; Dunn, Bruce; Wu, Hong | Proceedings of the National Academy of Sciences of the United States of America | 18791068 | 2008 Sep 23 |
Multiscale simulations of heterogeneous model membranes. | Pandit, Sagar A; Scott, H Larry | Biochimica et biophysica acta | 18848917 | 2009 Jan |
Structure and dynamics of a fluid phase bilayer on a solid support as observed by a molecular dynamics computer simulation. | Roark, Matthew; Feller, Scott E | Langmuir : the ACS journal of surfaces and colloids | 18850686 | 2008 Nov 4 |
JADAS: a customizable automated data acquisition system and its application to ice-embedded single particles. | Zhang, Junjie; Nakamura, Natsuko; Shimizu, Yuko; Liang, Nathan; Liu, Xiangan; Jakana, Joanita; Marsh, Michael P; Booth, Christopher R; Shinkawa, Takao; Nakata, Munetaka; Chiu, Wah | Journal of structural biology | 18926912 | 2009 Jan |
Nanoengineering ion channels for optical control. | Gorostiza, Pau; Isacoff, Ehud Y | Physiology (Bethesda, Md.) | 18927200 | 2008 Oct |
Optical switches for remote and noninvasive control of cell signaling. | Gorostiza, Pau; Isacoff, Ehud Y | Science (New York, N.Y.) | 18927384 | 2008 Oct 17 |
53BP1 promotes non-homologous end joining of telomeres by increasing chromatin mobility. | Dimitrova, Nadya; Chen, Yi-Chun M; Spector, David L; de Lange, Titia | Nature | 18931659 | 2008 Nov 27 |
NLS peptide conjugated molecular beacons for visualizing nuclear RNA in living cells. | Nitin, Nitin; Bao, Gang | Bioconjugate chemistry | 18939859 | 2008 Nov 19 |
Novel mechanism of hexamer ring assembly in protein/RNA interactions revealed by single molecule imaging. | Xiao, Feng; Zhang, Hui; Guo, Peixuan | Nucleic acids research | 18940870 | 2008 Nov |
Structural transitions in ion coordination driven by changes in competition for ligand binding. | Varma, Sameer; Rempe, Susan B | Journal of the American Chemical Society | 18954053 | 2008 Nov 19 |
Protein segment finder: an online search engine for segment motifs in the PDB. | Samson, Abraham O; Levitt, Michael | Nucleic acids research | 18974183 | 2009 Jan |
Designing artificial cells to harness the biological ion concentration gradient. | Xu, Jian; Lavan, David A | Nature nanotechnology | 18989332 | 2008 Nov |
Optical lock-in detection imaging microscopy for contrast-enhanced imaging in living cells. | Marriott, Gerard; Mao, Shu; Sakata, Tomoyo; Ran, Jing; Jackson, David K; Petchprayoon, Chutima; Gomez, Timothy J; Warp, Erica; Tulyathan, Orapim; Aaron, Holly L; Isacoff, Ehud Y; Yan, Yuling | Proceedings of the National Academy of Sciences of the United States of America | 19004775 | 2008 Nov 18 |
Evidence for leaflet-dependent redistribution of charged molecules in fluid supported phospholipid bilayers. | Shreve, Andrew P; Howland, Michael C; Sapuri-Butti, Annapoorna R; Allen, Toby W; Parikh, Atul N | Langmuir : the ACS journal of surfaces and colloids | 19007257 | 2008 Dec 2 |
Quantification of cell edge velocities and traction forces reveals distinct motility modules during cell spreading. | Dubin-Thaler, Benjamin J; Hofman, Jake M; Cai, Yunfei; Xenias, Harry; Spielman, Ingrid; Shneidman, Anna V; David, Lawrence A; Dobereiner, Hans-Gunther; Wiggins, Chris H; Sheetz, Michael P | PloS one | 19011687 | 2008 |
Photolithographic patterning of organosilane monolayer for generating large area two-dimensional B lymphocyte arrays. | Li, Nan; Ho, Chih-Ming | Lab on a chip | 19023473 | 2008 Dec |
Fibronectin in aging extracellular matrix fibrils is progressively unfolded by cells and elicits an enhanced rigidity response. | Antia, Meher; Baneyx, Gretchen; Kubow, Kristopher E; Vogel, Viola | Faraday discussions | 19048998 | 2008 |
Reversible switching of pRNA activity on the DNA packaging motor of bacteriophage phi29. | Ko, Seung Hyeon; Chen, Yi; Shu, Dan; Guo, Peixuan; Mao, Chengde | Journal of the American Chemical Society | 19049308 | 2008 Dec 31 |
Cell adhesion to agrin presented as a nanopatterned substrate is consistent with an interaction with the extracellular matrix and not transmembrane adhesion molecules. | Wolfram, Tobias; Spatz, Joachim P; Burgess, Robert W | BMC cell biology | 19055842 | 2008 |
Operational Regimes and Physics Present in Optoelectronic Tweezers. | Valley, Justin K; Jamshidi, Arash; Ohta, Aaron T; Hsu, Hsan-Yin; Wu, Ming C | Journal of microelectromechanical systems : a joint IEEE and ASME publication on microstructures, microactuators, microsensors, and microsystems | 19079767 | 2008 Apr |
Plasmon resonance energy transfer (PRET)-based molecular imaging of cytochrome c in living cells. | Choi, Yeonho; Kang, Taewook; Lee, Luke P | Nano letters | 19093833 | 2009 Jan |
Tuning the optical and electronic properties of colloidal nanocrystals by lattice strain. | Smith, Andrew M; Mohs, Aaron M; Nie, Shuming | Nature nanotechnology | 19119284 | 2009 Jan |
Remote optical switch for localized and selective control of gene interference. | Lee, Somin Eunice; Liu, Gang Logan; Kim, Franklin; Lee, Luke P | Nano letters | 19128006 | 2009 Feb |
Expression of sprouty2 inhibits B-cell proliferation and is epigenetically silenced in mouse and human B-cell lymphomas. | Frank, Matthew J; Dawson, David W; Bensinger, Steven J; Hong, Jason S; Knosp, Wendy M; Xu, Lizhong; Balatoni, Cynthia E; Allen, Eric L; Shen, Rhine R; Bar-Sagi, Dafna; Martin, Gail R; Teitell, Michael A | Blood | 19147787 | 2009 Mar 12 |
Talin depletion reveals independence of initial cell spreading from integrin activation and traction. | Zhang, Xian; Jiang, Guoying; Cai, Yunfei; Monkley, Susan J; Critchley, David R; Sheetz, Michael P | Nature cell biology | 19160486 | 2008 Sep |
A role for the juxtamembrane cytoplasm in the molecular dynamics of focal adhesions. | Wolfenson, Haguy; Lubelski, Ariel; Regev, Tamar; Klafter, Joseph; Henis, Yoav I; Geiger, Benjamin | PloS one | 19172999 | 2009 |
Porous nanoparticle supported lipid bilayers (protocells) as delivery vehicles. | Liu, Juewen; Stace-Naughton, Alison; Jiang, Xingmao; Brinker, C Jeffrey | Journal of the American Chemical Society | 19173660 | 2009 Feb 4 |
Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility. | Babor, Mariana; Kortemme, Tanja | Proteins | 19194863 | 2009 Jun |
Site-specific chemical modification of recombinant proteins produced in mammalian cells by using the genetically encoded aldehyde tag. | Wu, Peng; Shui, Wenqing; Carlson, Brian L; Hu, Nancy; Rabuka, David; Lee, Julia; Bertozzi, Carolyn R | Proceedings of the National Academy of Sciences of the United States of America | 19202059 | 2009 Mar 3 |
An Improved United Atom Force Field for Simulation of Mixed Lipid Bilayers. | Chiu, See-Wing; Pandit, Sagar A; Scott, H L; Jakobsson, Eric | The journal of physical chemistry. B | 19203242 | 2009 Feb 9 |
Fabrication of massive sheets of single layer patterned arrays using lipid directed reengineered phi29 motor dodecamer. | Xiao, Feng; Sun, Jinchuan; Coban, Oana; Schoen, Peter; Wang, Joseph Che-Yen; Cheng, R Holland; Guo, Peixuan | ACS nano | 19206255 | 2009 Jan 27 |
Live cell interferometry reveals cellular dynamism during force propagation. | Reed, Jason; Troke, Joshua J; Schmit, Joanna; Han, Sen; Teitell, Michael A; Gimzewski, James K | ACS nano | 19206480 | 2008 May |
Impact of order and disorder in RGD nanopatterns on cell adhesion. | Huang, Jinghuan; Grater, Stefan V; Corbellini, Francesca; Rinck, Sabine; Bock, Eva; Kemkemer, Ralf; Kessler, Horst; Ding, Jiandong; Spatz, Joachim P | Nano letters | 19206508 | 2009 Mar |
Copolymeric nanofilm platform for controlled and localized therapeutic delivery. | Chow, Edward Kai-Hua; Pierstorff, Erik; Cheng, Genhong; Ho, Dean | ACS nano | 19206545 | 2008 Jan |
Cell fate regulation by coupling mechanical cycles to biochemical signaling pathways. | Vogel, Viola; Sheetz, Michael P | Current opinion in cell biology | 19217273 | 2009 Feb |
The structural dynamics of macromolecular processes. | Russel, Daniel; Lasker, Keren; Phillips, Jeremy; Schneidman-Duhovny, Dina; Velazquez-Muriel, Javier A; Sali, Andrej | Current opinion in cell biology | 19223165 | 2009 Feb |
Inferential optimization for simultaneous fitting of multiple components into a CryoEM map of their assembly. | Lasker, Keren; Topf, Maya; Sali, Andrej; Wolfson, Haim J | Journal of molecular biology | 19233204 | 2009 Apr 24 |
Optimization strategies for electrospun silk fibroin tissue engineering scaffolds. | Meinel, Anne J; Kubow, Kristopher E; Klotzsch, Enrico; Garcia-Fuentes, Marcos; Smith, Michael L; Vogel, Viola; Merkle, Hans P; Meinel, Lorenz | Biomaterials | 19233463 | 2009 Jun |
Aptamer-based electrochemical biosensor for Botulinum neurotoxin. | Wei, Fang; Ho, Chih-Ming | Analytical and bioanalytical chemistry | 19234874 | 2009 Apr |
Structural studies of HIV-1 Gag p6ct and its interaction with Vpr determined by solution nuclear magnetic resonance. | Salgado, Gilmar F; Marquant, Rodrigue; Vogel, Alexander; Alves, Isabel D; Feller, Scott E; Morellet, Nelly; Bouaziz, Serge | Biochemistry | 19254034 | 2009 Mar 24 |
Early stages of oxidative stress-induced membrane permeabilization: a neutron reflectometry study. | Smith, Hillary L; Howland, Michael C; Szmodis, Alan W; Li, Qijuan; Daemen, Luke L; Parikh, Atul N; Majewski, Jaroslaw | Journal of the American Chemical Society | 19275260 | 2009 Mar 18 |
E. coli expression of a soluble, active single-chain antibody variable fragment containing a nuclear localization signal. | Xiong, Hairong; Li, Shuyi; Yang, Zhanqiu; Burgess, Richard R; Dynan, William S | Protein expression and purification | 19281848 | 2009 Aug |
Rigidity-dependent cross talk between integrin and cadherin signaling. | Tsai, Jones; Kam, Lance | Biophysical journal | 19289031 | 2009 Mar 18 |
Cell kinase activity assay based on surface enhanced Raman spectroscopy. | Yue, Zhicao; Zhuang, Fengfeng; Kumar, Rajar; Wang, Ieong; Cronin, Stephen B; Liu, Yi-Hsin | Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy | 19299194 | 2009 Jul 15 |
The Ste5 scaffold directs mating signaling by catalytically unlocking the Fus3 MAP kinase for activation. | Good, Matthew; Tang, Grace; Singleton, Julie; Remenyi, Attila; Lim, Wendell A | Cell | 19303851 | 2009 Mar 20 |
Trap profiles of projector based optoelectronic tweezers (OET) with HeLa cells. | Neale, Steven L; Ohta, Aaron T; Hsu, Hsan-Yin; Valley, Justin K; Jamshidi, Arash; Wu, Ming C | Optics express | 19333286 | 2009 Mar 30 |
Nuclear neighborhoods and gene expression. | Zhao, Rui; Bodnar, Megan S; Spector, David L | Current opinion in genetics & development | 19339170 | 2009 Apr |
Nanosculpting reversed wavelength sensitivity into a photoswitchable iGluR. | Numano, Rika; Szobota, Stephanie; Lau, Albert Y; Gorostiza, Pau; Volgraf, Matthew; Roux, Benoit; Trauner, Dirk; Isacoff, Ehud Y | Proceedings of the National Academy of Sciences of the United States of America | 19342491 | 2009 Apr 21 |
T cell antigen receptor signaling and immunological synapse stability require myosin IIA. | Ilani, Tal; Vasiliver-Shamis, Gaia; Vardhana, Santosh; Bretscher, Anthony; Dustin, Michael L | Nature immunology | 19349987 | 2009 May |
A stochastic spectral analysis of transcriptional regulatory cascades. | Walczak, Aleksandra M; Mugler, Andrew; Wiggins, Chris H | Proceedings of the National Academy of Sciences of the United States of America | 19351901 | 2009 Apr 21 |
Optical properties of the crescent-shaped nanohole antenna. | Wu, Liz Y; Ross, Benjamin M; Lee, Luke P | Nano letters | 19354226 | 2009 May |
The predicted structure of the headpiece of the Huntingtin protein and its implications on Huntingtin aggregation. | Kelley, Nicholas W; Huang, Xuhui; Tam, Stephen; Spiess, Christoph; Frydman, Judith; Pande, Vijay S | Journal of molecular biology | 19361448 | 2009 May 22 |
The cellular context of T cell signaling. | Dustin, Michael L | Immunity | 19371714 | 2009 Apr 17 |
Creation of functional micro/nano systems through top-down and bottom-up approaches. | Wong, Tak-Sing; Brough, Branden; Ho, Chih-Ming | Molecular & cellular biomechanics : MCB | 19382535 | 2009 Mar |
Plasma fluorination of diamond-like carbon surfaces: mechanism and application to nanoimprint lithography. | Schvartzman, M; Wind, S J | Nanotechnology | 19420525 | 2009 Apr 8 |
Electrostatically mediated liposome fusion and lipid exchange with a nanoparticle-supported bilayer for control of surface charge, drug containment, and delivery. | Liu, Juewen; Jiang, Xingmao; Ashley, Carlee; Brinker, C Jeffrey | Journal of the American Chemical Society | 19445508 | 2009 Jun 10 |
Kinetic buffering of cross talk between bacterial two-component sensors. | Groban, Eli S; Clarke, Elizabeth J; Salis, Howard M; Miller, Susan M; Voigt, Christopher A | Journal of molecular biology | 19445950 | 2009 Jul 17 |
Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy. | Cong, Yao; Zhang, Qinfen; Woolford, David; Schweikardt, Thorsten; Khant, Htet; Dougherty, Matthew; Ludtke, Steven J; Chiu, Wah; Decker, Heinz | Structure (London, England : 1993) | 19446530 | 2009 May 13 |
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The switchable integrin adhesome. | Zaidel-Bar, Ronen; Geiger, Benjamin | Journal of cell science | 20410370 | 2010 May 1 |
Titanium-silicon oxide film structures for polarization-modulated infrared reflection absorption spectroscopy. | Dunlop, Iain E; Zorn, Stefan; Richter, Gunther; Srot, Vesna; Kelsch, Marion; van Aken, Peter A; Skoda, Maximilian; Gerlach, Alexander; Spatz, Joachim P; Schreiber, Frank | Thin solid films | 20418963 | 2009 Jan 30 |
An information-theoretic derivation of min-cut-based clustering. | Raj, Anil; Wiggins, Chris H | IEEE transactions on pattern analysis and machine intelligence | 20431126 | 2010 Jun |
Design and application of single fluorophore dual-view imaging system containing both the objective- and prism-type TIRF. | Zhang, Hui; Shu, Dan; Wang, Wenjuan; Guo, Peixuan | Proceedings of SPIE | 20436791 | 2010 |
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Single-sided continuous optoelectrowetting (SCOEW) for droplet manipulation with light patterns. | Park, Sung-Yong; Teitell, Michael A; Chiou, Eric P Y | Lab on a chip | 20448870 | 2010 Jul 7 |
Silica nanoparticle supported lipid bilayers for gene delivery. | Liu, Juewen; Stace-Naughton, Alison; Brinker, C Jeffrey | Chemical communications (Cambridge, England) | 20448959 | 2009 Sep 14 |
Charge, hydrophobicity, and confined water: putting past simulations into a simple theoretical framework. | England, Jeremy L; Pande, Vijay S | Biochemistry and cell biology = Biochimie et biologie cellulaire | 20453936 | 2010 Apr |
Chromatin dynamics. | Hubner, Michael R; Spector, David L | Annual review of biophysics | 20462379 | 2010 |
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Self-complementary AAV mediates gene targeting and enhances endonuclease delivery for double-strand break repair. | Hirsch, M L; Green, L; Porteus, M H; Samulski, R J | Gene therapy | 20463753 | 2010 Sep |
Toward an integrated structural model of the 26S proteasome. | Forster, Friedrich; Lasker, Keren; Nickell, Stephan; Sali, Andrej; Baumeister, Wolfgang | Molecular & cellular proteomics : MCP | 20467039 | 2010 Aug |
Mechanisms controlling cell size and shape during isotropic cell spreading. | Xiong, Yuguang; Rangamani, Padmini; Fardin, Marc-Antoine; Lipshtat, Azi; Dubin-Thaler, Benjamin; Rossier, Olivier; Sheetz, Michael P; Iyengar, Ravi | Biophysical journal | 20483321 | 2010 May 19 |
Use of a microscope stage-mounted Nickel-63 microirradiator for real-time observation of the DNA double-strand break response. | Cao, Zhen; Kuhne, Wendy W; Steeb, Jennifer; Merkley, Mark A; Zhou, Yunfeng; Janata, Jiri; Dynan, William S | Nucleic acids research | 20484377 | 2010 Aug |
Designing customized cell signalling circuits. | Lim, Wendell A | Nature reviews. Molecular cell biology | 20485291 | 2010 Jun |
Approaches for stoichiometry and distance determination of nanometer bio-complex by dual-channel single molecule imaging. | Zhang, Hui; Shu, Dan; Browne, Mark; Guo, Peixuan | IEEE/NIH Life Science Systems and Applications Workshop. IEEE/NIH Life Science Systems and Applications Workshop | 20485472 | 2009 Apr 9 |
FoXS: a web server for rapid computation and fitting of SAXS profiles. | Schneidman-Duhovny, Dina; Hammel, Michal; Sali, Andrej | Nucleic acids research | 20507903 | 2010 Jul |
Integrative structure modeling of macromolecular assemblies from proteomics data. | Lasker, Keren; Phillips, Jeremy L; Russel, Daniel; Velazquez-Muriel, Javier; Schneidman-Duhovny, Dina; Tjioe, Elina; Webb, Ben; Schlessinger, Avner; Sali, Andrej | Molecular & cellular proteomics : MCP | 20507923 | 2010 Aug |
Robust properties of membrane-embedded connector channel of bacterial virus phi29 DNA packaging motor. | Jing, Peng; Haque, Farzin; Vonderheide, Anne P; Montemagno, Carlo; Guo, Peixuan | Molecular bioSystems | 20523933 | 2010 Oct |
Gold-Tipped Elastomeric Pillars for Cellular Mechanotransduction. | Ghassemi, S; Rossier, O; Sheetz, M P; Wind, S J; Hone, J | Journal of vacuum science & technology. B, Microelectronics and nanometer structures : processing, measurement, and phenomena : an official journal of the American Vacuum Society | 20526428 | 2009 Nov 1 |
Cytotoxic immunological synapses. | Dustin, Michael L; Long, Eric O | Immunological reviews | 20536553 | 2010 May |
Optoelectronic Tweezers as a Tool for Parallel Single-Cell Manipulation and Stimulation. | Valley, Justin K; Ohta, Aaron T; Hsu, Hsan-Yin; Neale, Steven L; Jamshidi, Arash; Wu, Ming C | IEEE transactions on biomedical circuits and systems | 20543904 | 2009 Dec 1 |
Identifying Components in 3D Density Maps of Protein Nanomachines by Multi-scale Segmentation. | Pintilie, Grigore; Zhang, Junjie; Chiu, Wah; Gossard, David | IEEE/NIH Life Science Systems and Applications Workshop. IEEE/NIH Life Science Systems and Applications Workshop | 20556220 | 2009 Apr 1 |
Surface ligand effects on metal-affinity coordination to quantum dots: implications for nanoprobe self-assembly. | Dennis, Allison M; Sotto, David C; Mei, Bing C; Medintz, Igor L; Mattoussi, Hedi; Bao, Gang | Bioconjugate chemistry | 20568725 | 2010 Jul 21 |
Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle. | Pereira, Jose H; Ralston, Corie Y; Douglas, Nicholai R; Meyer, Daniel; Knee, Kelly M; Goulet, Daniel R; King, Jonathan A; Frydman, Judith; Adams, Paul D | The Journal of biological chemistry | 20573955 | 2010 Sep 3 |
A light-gated, potassium-selective glutamate receptor for the optical inhibition of neuronal firing. | Janovjak, Harald; Szobota, Stephanie; Wyart, Claire; Trauner, Dirk; Isacoff, Ehud Y | Nature neuroscience | 20581843 | 2010 Aug |
Interrogating cell signalling network sensitively monitors cell fate transition during early differentiation of mouse embryonic stem cells. | Yue, ZhiCao; Zhuang, FengFeng; Liu, Yi-Hsin; Ho, Chih-ming | Science China. Life sciences | 20596958 | 2010 Jan |
Action of the chaperonin GroEL/ES on a non-native substrate observed with single-molecule FRET. | Kim, So Yeon; Miller, Erik J; Frydman, Judith; Moerner, W E | Journal of molecular biology | 20600107 | 2010 Aug 27 |
Efficient dielectrophoretic patterning of embryonic stem cells in energy landscapes defined by hydrogel geometries. | Tsutsui, Hideaki; Yu, Edmond; Marquina, Sabrina; Valamehr, Bahram; Wong, Ieong; Wu, Hong; Ho, Chih-Ming | Annals of biomedical engineering | 20614250 | 2010 Dec |
Partially folded aggregation intermediates of human gammaD-, gammaC-, and gammaS-crystallin are recognized and bound by human alphaB-crystallin chaperone. | Acosta-Sampson, Ligia; King, Jonathan | Journal of molecular biology | 20621668 | 2010 Aug 6 |
Improving predicted protein loop structure ranking using a Pareto-optimality consensus method. | Li, Yaohang; Rata, Ionel; Chiu, See-wing; Jakobsson, Eric | BMC structural biology | 20642859 | 2010 |
An agar gel membrane-PDMS hybrid microfluidic device for long term single cell dynamic study. | Wong, Ieong; Atsumi, Shota; Huang, Wei-Chih; Wu, Tung-Yun; Hanai, Taizo; Lam, Miu-Ling; Tang, Ping; Yang, Jian; Liao, James C; Ho, Chih-Ming | Lab on a chip | 20664845 | 2010 Oct 21 |
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Rational design, synthesis, and characterization of highly fluorescent optical switches for high-contrast optical lock-in detection (OLID) imaging microscopy in living cells. | Petchprayoon, Chutima; Yan, Yuling; Mao, Shu; Marriott, Gerard | Bioorganic & medicinal chemistry | 20674372 | 2011 Feb 1 |
PNPASE regulates RNA import into mitochondria. | Wang, Geng; Chen, Hsiao-Wen; Oktay, Yavuz; Zhang, Jin; Allen, Eric L; Smith, Geoffrey M; Fan, Kelly C; Hong, Jason S; French, Samuel W; McCaffery, J Michael; Lightowlers, Robert N; Morse 3rd, Herbert C; Koehler, Carla M; Teitell, Michael A | Cell | 20691904 | 2010 Aug 6 |
Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions. | Murata, Kazuyoshi; Liu, Xiangan; Danev, Radostin; Jakana, Joanita; Schmid, Michael F; King, Jonathan; Nagayama, Kuniaki; Chiu, Wah | Structure (London, England : 1993) | 20696391 | 2010 Aug 11 |
Stretchy proteins on stretchy substrates: the important elements of integrin-mediated rigidity sensing. | Moore, Simon W; Roca-Cusachs, Pere; Sheetz, Michael P | Developmental cell | 20708583 | 2010 Aug 17 |
Oriented Insertion of phi29 N-Hexahistidine-tagged gp10 Connector Protein Assemblies into C(20)BAS Bolalipid Membrane Vesicles. | Hyun, Seok-Hee; Kim, Hee-Kwon; Kim, Jong-Mok; Thompson, David H | Journal of the American Chemical Society | 20715817 | 2010 Aug 17 |
miRNA-based mechanism for the commitment of multipotent progenitors to a single cellular fate. | Mann, Mati; Barad, Omer; Agami, Reuven; Geiger, Benjamin; Hornstein, Eran | Proceedings of the National Academy of Sciences of the United States of America | 20720163 | 2010 Sep 7 |
Single molecule transcription profiling with AFM. | Reed, Jason; Mishra, Bud; Pittenger, Bede; Magonov, Sergei; Troke, Joshua; Teitell, Michael A; Gimzewski, James K | Nanotechnology | 20721301 | 2007 May 9 |
One-way traffic of a viral motor channel for double-stranded DNA translocation. | Jing, Peng; Haque, Farzin; Shu, Dan; Montemagno, Carlo; Guo, Peixuan | Nano letters | 20722407 | 2010 Sep 8 |
SNX27 mediates PDZ-directed sorting from endosomes to the plasma membrane. | Lauffer, Benjamin E L; Melero, Cristina; Temkin, Paul; Lei, Cai; Hong, Wanjin; Kortemme, Tanja; von Zastrow, Mark | The Journal of cell biology | 20733053 | 2010 Aug 23 |
Synthesis of a gold nanoparticle dimer plasmonic resonator through two-phase-mediated functionalization. | Yim, Tae-Jin; Wang, Yuan; Zhang, Xiang | Nanotechnology | 20737026 | 2008 Oct 29 |
High throughput cell nanomechanics with mechanical imaging interferometry. | Reed, Jason; Frank, Matthew; Troke, Joshua J; Schmit, Joanna; Han, Sen; Teitell, Michael A; Gimzewski, James K | Nanotechnology | 20737027 | 2008 Jun 11 |
Pseudomonas aeruginosa Homoserine lactone activates store-operated cAMP and cystic fibrosis transmembrane regulator-dependent Cl- secretion by human airway epithelia. | Schwarzer, Christian; Wong, Steven; Shi, James; Matthes, Elizabeth; Illek, Beate; Ianowski, Juan P; Arant, Ryan J; Isacoff, Ehud; Vais, Horia; Foskett, J Kevin; Maiellaro, Isabella; Hofer, Aldebaran M; Machen, Terry E | The Journal of biological chemistry | 20739289 | 2010 Nov 5 |
Alternative splicing of neuroligin regulates the rate of presynaptic differentiation. | Lee, Hanson; Dean, Camin; Isacoff, Ehud | The Journal of neuroscience : the official journal of the Society for Neuroscience | 20739565 | 2010 Aug 25 |
Biomolecular plasmonics for quantitative biology and nanomedicine. | Lee, Somin Eunice; Lee, Luke P | Current opinion in biotechnology | 20801636 | 2010 Aug |
Phosphotyrosine signaling: evolving a new cellular communication system. | Lim, Wendell A; Pawson, Tony | Cell | 20813250 | 2010 Sep 3 |
Imaging dynamic cellular events with quantum dots The bright future. | Smith, Andrew M; Wen, Mary M; Nie, Shuming | The biochemist | 20824157 | 2010 Jun 1 |
Determining macromolecular assembly structures by molecular docking and fitting into an electron density map. | Lasker, Keren; Sali, Andrej; Wolfson, Haim J | Proteins | 20827723 | 2010 Nov 15 |
Motile and non-motile sperm diagnostic manipulation using optoelectronic tweezers. | Ohta, Aaron T; Garcia, Maurice; Valley, Justin K; Banie, Lia; Hsu, Hsan-Yin; Jamshidi, Arash; Neale, Steven L; Lue, Tom; Wu, Ming C | Lab on a chip | 20835428 | 2010 Dec 7 |
A new strategy to photoactivate green fluorescent protein. | Groff, Dan; Wang, Feng; Jockusch, Steffen; Turro, Nicholas J; Schultz, Peter G | Angewandte Chemie (International ed. in English) | 20836111 | 2010 Oct 11 |
Nonrigid registration of 2-D and 3-D dynamic cell nuclei images for improved classification of subcellular particle motion. | Kim, Il-Han; Chen, Yi-Chun M; Spector, David L; Eils, Roland; Rohr, Karl | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 20840894 | 2011 Apr |
Scanless two-photon excitation of channelrhodopsin-2. | Papagiakoumou, Eirini; Anselmi, Francesca; Begue, Aurelien; de Sars, Vincent; Gluckstad, Jesper; Isacoff, Ehud Y; Emiliani, Valentina | Nature methods | 20852649 | 2010 Oct |
AID-induced genotoxic stress promotes B cell differentiation in the germinal center via ATM and LKB1 signaling. | Sherman, Mara H; Kuraishy, Ali I; Deshpande, Chetan; Hong, Jason S; Cacalano, Nicholas A; Gatti, Richard A; Manis, John P; Damore, Michael A; Pellegrini, Matteo; Teitell, Michael A | Molecular cell | 20864035 | 2010 Sep 24 |
Information-optimal transcriptional response to oscillatory driving. | Mugler, Andrew; Walczak, Aleksandra M; Wiggins, Chris H | Physical review letters | 20867954 | 2010 Jul 30 |
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Nanoplasmonic gene regulation. | Lee, Somin Eunice; Lee, Luke P | Current opinion in chemical biology | 20888286 | 2010 Oct |
Multi-species integrative biclustering. | Waltman, Peter; Kacmarczyk, Thadeous; Bate, Ashley R; Kearns, Daniel B; Reiss, David J; Eichenberger, Patrick; Bonneau, Richard | Genome biology | 20920250 | 2010 |
Macromolecular docking restrained by a small angle X-ray scattering profile. | Schneidman-Duhovny, Dina; Hammel, Michal; Sali, Andrej | Journal of structural biology | 20920583 | 2011 Mar |
Nuclear speckles. | Spector, David L; Lamond, Angus I | Cold Spring Harbor perspectives in biology | 20926517 | 2011 Feb |
Cell-directed-assembly: directing the formation of nano/bio interfaces and architectures with living cells. | Baca, Helen K; Carnes, Eric C; Ashley, Carlee E; Lopez, DeAnna M; Douthit, Cynthia; Karlin, Shelly; Brinker, C Jeffrey | Biochimica et biophysica acta | 20933574 | 2011 Mar |
SIMULATION OF ION CONDUCTION IN ýý-HEMOLYSIN NANOPORES WITH COVALENTLY ATTACHED ýý-CYCLODEXTRIN BASED ON BOLTZMANN TRANSPORT MONTE CARLO MODEL. | Toghraee, Reza; Lee, Kyu-Il; Papke, David; Chiu, See-Wing; Jakobsson, Eric; Ravaioli, Umberto | Journal of computational and theoretical nanoscience | 20938493 | 2010 Dec |
Safe and effective synthetic biology. | LaVan, David A; Marmon, Louis M | Nature biotechnology | 20944581 | 2010 Oct |
Workshop on molecular animation. | Bromberg, Sarina; Chiu, Wah; Ferrin, Thomas E | Structure (London, England : 1993) | 20947014 | 2010 Oct 13 |
A noninvasive, motility independent, sperm sorting method and technology to identify and retrieve individual viable nonmotile sperm for intracytoplasmic sperm injection. | Garcia, Maurice M; Ohta, Aaron T; Walsh, Thomas J; Vittinghof, Eric; Lin, Guiting; Wu, Ming C; Lue, Tom F | The Journal of urology | 20952004 | 2010 Dec |
The convergence of bio, nano, and information technology: When Worlds Collide. | Ho, Chih-Ming; Chen, Jia Ming | IEEE nanotechnology magazine | 20953308 | 2008 Feb 15 |
Molecular rearrangements involved in the capsid shell maturation of bacteriophage T7. | Ionel, Alina; Velazquez-Muriel, Javier A; Luque, Daniel; Cuervo, Ana; Caston, Jose R; Valpuesta, Jose M; Martin-Benito, Jaime; Carrascosa, Jose L | The Journal of biological chemistry | 20962334 | 2011 Jan 7 |
The group II chaperonin Mm-Cpn binds and refolds human ýýD crystallin. | Knee, Kelly M; Goulet, Daniel R; Zhang, Junjie; Chen, Bo; Chiu, Wah; King, Jonathan A | Protein science : a publication of the Protein Society | 20981710 | 2011 Jan |
Quantifying evolvability in small biological networks. | Mugler, A; Ziv, E; Nemenman, I; Wiggins, C H | IET systems biology | 21028928 | 2009 Sep |
Filtering of visual information in the tectum by an identified neural circuit. | Del Bene, Filippo; Wyart, Claire; Robles, Estuardo; Tran, Amanda; Looger, Loren; Scott, Ethan K; Isacoff, Ehud Y; Baier, Herwig | Science (New York, N.Y.) | 21030657 | 2010 Oct 29 |
Graphical models for inferring single molecule dynamics. | Bronson, Jonathan E; Hofman, Jake M; Fei, Jingyi; Gonzalez Jr, Ruben L; Wiggins, Chris H | BMC bioinformatics | 21034427 | 2010 |
Multichromatic control of gene expression in Escherichia coli. | Tabor, Jeffrey J; Levskaya, Anselm; Voigt, Christopher A | Journal of molecular biology | 21035461 | 2011 Jan 14 |
DREAM4: Combining genetic and dynamic information to identify biological networks and dynamical models. | Greenfield, Alex; Madar, Aviv; Ostrer, Harry; Bonneau, Richard | PloS one | 21049040 | 2010 |
Application of phi29 motor pRNA for targeted therapeutic delivery of siRNA silencing metallothionein-IIA and survivin in ovarian cancers. | Tarapore, Pheruza; Shu, Yi; Guo, Peixuan; Ho, Shuk-Mei | Molecular therapy : the journal of the American Society of Gene Therapy | 21063391 | 2011 Feb |
Oxidative stress induces reactivation of Kaposi's sarcoma-associated herpesvirus and death of primary effusion lymphoma cells. | Li, Xudong; Feng, Jiaying; Sun, Ren | Journal of virology | 21068240 | 2011 Jan |
Two-photon imaging of calcium in virally transfected striate cortical neurons of behaving monkey. | Heider, Barbara; Nathanson, Jason L; Isacoff, Ehud Y; Callaway, Edward M; Siegel, Ralph M | PloS one | 21079806 | 2010 |
Luminescent nanocrystal stress gauge. | Choi, Charina L; Koski, Kristie J; Olson, Andrew C K; Alivisatos, A Paul | Proceedings of the National Academy of Sciences of the United States of America | 21098301 | 2010 Dec 14 |
The emerging field of RNA nanotechnology. | Guo, Peixuan | Nature nanotechnology | 21102465 | 2010 Dec |
Single cell force spectroscopy of T cells recognizing a myelin-derived peptide on antigen presenting cells. | Hoffmann, Sabrina; Hosseini, Babak H; Hecker, Markus; Louban, Ilia; Bulbuc, Nadja; Garbi, Natalio; Wabnitz, Guido H; Samstag, Yvonne; Spatz, Joachim P; Hammerling, Gunter J | Immunology letters | 21112354 | 2011 Apr 30 |
New developments in the induction and antiviral effectors of type I interferon. | Liu, Su-Yang; Sanchez, David Jesse; Cheng, Genhong | Current opinion in immunology | 21123041 | 2011 Feb |
Bright and compact alloyed quantum dots with broadly tunable near-infrared absorption and fluorescence spectra through mercury cation exchange. | Smith, Andrew M; Nie, Shuming | Journal of the American Chemical Society | 21142154 | 2011 Jan 12 |
Sequences in PSF/SFPQ mediate radioresistance and recruitment of PSF/SFPQ-containing complexes to DNA damage sites in human cells. | Ha, Kyungsoo; Takeda, Yoshihiko; Dynan, William S | DNA repair | 21144806 | 2011 Mar 7 |
Optimized method for the synthesis and purification of adenosine--folic acid conjugates for use as transcription initiators in the preparation of modified RNA. | Laing, Brian M; Guo, Peixuan; Bergstrom, Donald E | Methods (San Diego, Calif.) | 21163352 | 2011 Jun |
Photothermal nanoblade for patterned cell membrane cutting. | Wu, Ting-Hsiang; Teslaa, Tara; Teitell, Michael A; Chiou, Pei-Yu | Optics express | 21164656 | 2010 Oct 25 |
Statistical method for revealing form-function relations in biological networks. | Mugler, Andrew; Grinshpun, Boris; Franks, Riley; Wiggins, Chris H | Proceedings of the National Academy of Sciences of the United States of America | 21183719 | 2011 Jan 11 |
Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli. | Moon, Tae Seok; Clarke, Elizabeth J; Groban, Eli S; Tamsir, Alvin; Clark, Ryan M; Eames, Matthew; Kortemme, Tanja; Voigt, Christopher A | Journal of molecular biology | 21185306 | 2011 Feb 18 |
The promise of optogenetics in cell biology: interrogating molecular circuits in space and time. | Toettcher, Jared E; Voigt, Christopher A; Weiner, Orion D; Lim, Wendell A | Nature methods | 21191370 | 2011 Jan |
Role of H3K27 demethylases Jmjd3 and UTX in transcriptional regulation. | Hubner, M R; Spector, D L | Cold Spring Harbor symposia on quantitative biology | 21209387 | 2010 |
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. | Chen, Dong-Hua; Baker, Matthew L; Hryc, Corey F; DiMaio, Frank; Jakana, Joanita; Wu, Weimin; Dougherty, Matthew; Haase-Pettingell, Cameron; Schmid, Michael F; Jiang, Wen; Baker, David; King, Jonathan A; Chiu, Wah | Proceedings of the National Academy of Sciences of the United States of America | 21220301 | 2011 Jan 25 |
Dual action of ATP hydrolysis couples lid closure to substrate release into the group II chaperonin chamber. | Douglas, Nicholai R; Reissmann, Stefanie; Zhang, Junjie; Chen, Bo; Jakana, Joanita; Kumar, Ramya; Chiu, Wah; Frydman, Judith | Cell | 21241893 | 2011 Jan 21 |
Photothermal nanoblade for large cargo delivery into mammalian cells. | Wu, Ting-Hsiang; Teslaa, Tara; Kalim, Sheraz; French, Christopher T; Moghadam, Shahriar; Wall, Randolph; Miller, Jeffery F; Witte, Owen N; Teitell, Michael A; Chiou, Pei-Yu | Analytical chemistry | 21247066 | 2011 Feb 15 |
Dual functional RNA nanoparticles containing phi29 motor pRNA and anti-gp120 aptamer for cell-type specific delivery and HIV-1 inhibition. | Zhou, Jiehua; Shu, Yi; Guo, Peixuan; Smith, David D; Rossi, John J | Methods (San Diego, Calif.) | 21256218 | 2011 Jun |
An optimized small molecule inhibitor cocktail supports long-term maintenance of human embryonic stem cells. | Tsutsui, Hideaki; Valamehr, Bahram; Hindoyan, Antreas; Qiao, Rong; Ding, Xianting; Guo, Shuling; Witte, Owen N; Liu, Xin; Ho, Chih-Ming; Wu, Hong | Nature communications | 21266967 | 2011 Jan 25 |
Effective electrophoretic mobilities and charges of anti-VEGF proteins determined by capillary zone electrophoresis. | Li, S Kevin; Liddell, Mark R; Wen, He | Journal of pharmaceutical and biomedical analysis | 21269789 | 2011 Jun 1 |
Focal adhesions in osteoneogenesis. | Biggs, M J P; Dalby, M J | Proceedings of the Institution of Mechanical Engineers. Part H, Journal of engineering in medicine | 21287830 | 2010 Dec |
Nanochromatography driven by the coffee ring effect. | Wong, Tak-Sing; Chen, Ting-Hsuan; Shen, Xiaoying; Ho, Chih-Ming | Analytical chemistry | 21288015 | 2011 Mar 15 |
High-speed droplet generation on demand driven by pulse laser-induced cavitation. | Park, Sung-Yong; Wu, Ting-Hsiang; Chen, Yue; Teitell, Michael A; Chiou, Pei-Yu | Lab on a chip | 21290045 | 2011 Mar 21 |
Intravitreal injection of AAV2 transduces macaque inner retina. | Yin, Lu; Greenberg, Kenneth; Hunter, Jennifer J; Dalkara, Deniz; Kolstad, Kathleen D; Masella, Benjamin D; Wolfe, Robert; Visel, Meike; Stone, Daniel; Libby, Richard T; Diloreto Jr, David; Schaffer, David; Flannery, John; Williams, David R; Merigan, Willi | Investigative ophthalmology & visual science | 21310920 | 2011 Apr |
A unified platform for optoelectrowetting and optoelectronic tweezers. | Valley, Justin K; Pei, Shao Ning; Ningpei, Shao; Jamshidi, Arash; Hsu, Hsan-Yin; Wu, Ming C | Lab on a chip | 21311817 | 2011 Apr 7 |
Nanolithographic control of the spatial organization of cellular adhesion receptors at the single-molecule level. | Schvartzman, Mark; Palma, Matteo; Sable, Julia; Abramson, Justin; Hu, Xian; Sheetz, Michael P; Wind, Shalom J | Nano letters | 21319842 | 2011 Mar 9 |
Assembly of multifunctional phi29 pRNA nanoparticles for specific delivery of siRNA and other therapeutics to targeted cells. | Shu, Yi; Cinier, Mathieu; Shu, Dan; Guo, Peixuan | Methods (San Diego, Calif.) | 21320601 | 2011 Jun |
Normal modes of prion proteins: from native to infectious particle. | Samson, Abraham O; Levitt, Michael | Biochemistry | 21338080 | 2011 Mar 29 |
Shear flow-induced formation of tubular cell protrusions in multiple myeloma cells. | Porat, Ziv; Yaron, Itamar; Katz, Ben-Zion; Kam, Zvi; Geiger, Benjamin | Journal of cellular physiology | 21344380 | 2011 Dec |
Regulation of cell differentiation by the DNA damage response. | Sherman, Mara H; Bassing, Craig H; Teitell, Michael A | Trends in cell biology | 21354798 | 2011 May |
Translating the lessons from gene therapy to the development of regenerative medicine. | Porteus, Matthew | Molecular therapy : the journal of the American Society of Gene Therapy | 21358706 | 2011 Mar |
The RAG2 C terminus suppresses genomic instability and lymphomagenesis. | Deriano, Ludovic; Chaumeil, Julie; Coussens, Marc; Multani, Asha; Chou, YiFan; Alekseyenko, Alexander V; Chang, Sandy; Skok, Jane A; Roth, David B | Nature | 21368836 | 2011 Mar 3 |
Optical quantal analysis of synaptic transmission in wild-type and rab3-mutant Drosophila motor axons. | Peled, Einat S; Isacoff, Ehud Y | Nature neuroscience | 21378971 | 2011 Apr |
Lateral shear forces applied to cells with single elastic micropillars to influence focal adhesion dynamics. | Heil, Patrick; Spatz, Joachim P | Journal of physics. Condensed matter : an Institute of Physics journal | 21386435 | 2010 May 19 |
Implications for treatment: GABAA receptors in aging, Down syndrome and Alzheimer's disease. | Rissman, Robert A; Mobley, William C | Journal of neurochemistry | 21388375 | 2011 May |
A modern ionotropic glutamate receptor with a K(+) selectivity signature sequence. | Janovjak, H; Sandoz, G; Isacoff, E Y | Nature communications | 21407198 | 2011 |
Optical control of calcium affinity in a spiroamido-rhodamine based calcium chelator. | Wu, Liangxing; Dai, Yingrui; Marriott, Gerard | Organic letters | 21417245 | 2011 Apr 15 |
Impact of local versus global ligand density on cellular adhesion. | Deeg, Janosch A; Louban, Ilia; Aydin, Daniel; Selhuber-Unkel, Christine; Kessler, Horst; Spatz, Joachim P | Nano letters | 21425841 | 2011 Apr 13 |
Molecular architecture and function of matrix adhesions. | Geiger, Benjamin; Yamada, Kenneth M | Cold Spring Harbor perspectives in biology | 21441590 | 2011 May |
Lipid bilayer coated Al(2)O(3) nanopore sensors: towards a hybrid biological solid-state nanopore. | Venkatesan, Bala Murali; Polans, James; Comer, Jeffrey; Sridhar, Supriya; Wendell, David; Aksimentiev, Aleksei; Bashir, Rashid | Biomedical microdevices | 21487665 | 2011 Aug |
High-resolution imaging of the immunological synapse and T-cell receptor microclustering through microfabricated substrates. | Biggs, M J P; Milone, M C; Santos, L C; Gondarenko, A; Wind, S J | Journal of the Royal Society, Interface / the Royal Society | 21490003 | 2011 Oct 7 |
AAV mediated GDNF secretion from retinal glia slows down retinal degeneration in a rat model of retinitis pigmentosa. | Dalkara, Deniz; Kolstad, Kathleen D; Guerin, Karen I; Hoffmann, Natalie V; Visel, Meike; Klimczak, Ryan R; Schaffer, David V; Flannery, John G | Molecular therapy : the journal of the American Society of Gene Therapy | 21522134 | 2011 Sep |
Optogenetic photochemical control of designer K+ channels in mammalian neurons. | Fortin, Doris L; Dunn, Timothy W; Fedorchak, Alexis; Allen, Duane; Montpetit, Rachel; Banghart, Matthew R; Trauner, Dirk; Adelman, John P; Kramer, Richard H | Journal of neurophysiology | 21525363 | 2011 Jul |
Selective biomolecular nanoarrays for parallel single-molecule investigations. | Palma, Matteo; Abramson, Justin J; Gorodetsky, Alon A; Penzo, Erika; Gonzalez Jr, Ruben L; Sheetz, Michael P; Nuckolls, Colin; Hone, James; Wind, Shalom J | Journal of the American Chemical Society | 21528859 | 2011 May 25 |
Pomalidomide augments fetal hemoglobin production without the myelosuppressive effects of hydroxyurea in transgenic sickle cell mice. | Meiler, Steffen E; Wade, Marlene; Kutlar, Ferdane; Yerigenahally, Shobha D; Xue, Yongjun; Moutouh-de Parseval, Laure A; Corral, Laura G; Swerdlow, Paul S; Kutlar, Abdullah | Blood | 21536862 | 2011 Jul 28 |
Scaffold proteins: hubs for controlling the flow of cellular information. | Good, Matthew C; Zalatan, Jesse G; Lim, Wendell A | Science (New York, N.Y.) | 21551057 | 2011 May 6 |
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. | Bendall, Sean C; Simonds, Erin F; Qiu, Peng; Amir, El-ad D; Krutzik, Peter O; Finck, Rachel; Bruggner, Robert V; Melamed, Rachel; Trejo, Angelica; Ornatsky, Olga I; Balderas, Robert S; Plevritis, Sylvia K; Sachs, Karen; Pe'er, Dana; Tanner, Scott D; Nolan | Science (New York, N.Y.) | 21551058 | 2011 May 6 |
Nanoengineering of Immune Cell Function. | Shen, Keyue; Milone, Michael C; Dustin, Michael L; Kam, Lance C | Materials Research Society symposia proceedings. Materials Research Society | 21562611 | 2009 Jan 1 |
Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure. | Zhang, Junjie; Ma, Boxue; DiMaio, Frank; Douglas, Nicholai R; Joachimiak, Lukasz A; Baker, David; Frydman, Judith; Levitt, Michael; Chiu, Wah | Structure (London, England : 1993) | 21565698 | 2011 May 11 |
Tricontinuous Cubic Nanostructure and Pore Size Patterning in Mesostructured Silica Films Templated with Glycerol Monooleate. | Dunphy, Darren R; Garcia, Fred L; Kaehr, Bryan; Khripin, Constantine Y; Collord, Andrew D; Baca, Helen K; Tate, Michael P; Hillhouse, Hugh W; Strzalka, Joseph W; Jiang, Zhang; Wang, Jin; Brinker, C Jeffrey | Chemistry of materials : a publication of the American Chemical Society | 21572556 | 2011 Apr 26 |
Inhibition of unfolding and aggregation of lens protein human gamma D crystallin by sodium citrate. | Goulet, Daniel R; Knee, Kelly M; King, Jonathan A | Experimental eye research | 21600897 | 2011 Oct |
A boost for the emerging field of RNA nanotechnology. | Shukla, Girish C; Haque, Farzin; Tor, Yitzhak; Wilhelmsson, L Marcus; Toulme, Jean-Jacques; Isambert, Herve; Guo, Peixuan; Rossi, John J; Tenenbaum, Scott A; Shapiro, Bruce A | ACS nano | 21604810 | 2011 May 24 |
LiGluR restores visual responses in rodent models of inherited blindness. | Caporale, Natalia; Kolstad, Kathleen D; Lee, Trevor; Tochitsky, Ivan; Dalkara, Deniz; Trauner, Dirk; Kramer, Richard; Dan, Yang; Isacoff, Ehud Y; Flannery, John G | Molecular therapy : the journal of the American Society of Gene Therapy | 21610698 | 2011 Jul |
Cell-specific delivery of diverse cargos by bacteriophage MS2 virus-like particles. | Ashley, Carlee E; Carnes, Eric C; Phillips, Genevieve K; Durfee, Paul N; Buley, Mekensey D; Lino, Christopher A; Padilla, David P; Phillips, Brandy; Carter, Mark B; Willman, Cheryl L; Brinker, C Jeffrey; Caldeira, Jerri do Carmo; Chackerian, Bryce; Wharto | ACS nano | 21615170 | 2011 Jul 26 |
Practical performance evaluation of a 10k ýý 10k CCD for electron cryo-microscopy. | Bammes, Benjamin E; Rochat, Ryan H; Jakana, Joanita; Chiu, Wah | Journal of structural biology | 21619932 | 2011 Sep |
Systematic quantitative characterization of cellular responses induced by multiple signals. | Al-Shyoukh, Ibrahim; Yu, Fuqu; Feng, Jiaying; Yan, Karen; Dubinett, Steven; Ho, Chih-Ming; Shamma, Jeff S; Sun, Ren | BMC systems biology | 21624115 | 2011 |
Recruitment interactions can override catalytic interactions in determining the functional identity of a protein kinase. | Won, Angela P; Garbarino, Joan E; Lim, Wendell A | Proceedings of the National Academy of Sciences of the United States of America | 21628578 | 2011 Jun 14 |
Engineering light-regulated ion channels. | Fortin, Doris L; Dunn, Timothy W; Kramer, Richard H | Cold Spring Harbor protocols | 21632787 | 2011 Jun |
Omnidirectional 3D nanoplasmonic optical antenna array via soft-matter transformation. | Ross, Benjamin M; Wu, Liz Y; Lee, Luke P | Nano letters | 21661733 | 2011 Jul 13 |
Disassembly of a core-satellite nanoassembled substrate for colorimetric biomolecular detection. | Waldeisen, John R; Wang, Tim; Ross, Benjamin M; Lee, Luke P | ACS nano. | 21667984 | 2011 Jul 26; |
Controlled confinement of DNA at the nanoscale: nanofabrication and surface bio-functionalization. | Palma, Matteo; Abramson, Justin J; Gorodetsky, Alon A; Nuckolls, Colin; Sheetz, Michael P; Wind, Shalom J; Hone, James | Methods in molecular biology (Clifton, N.J.) | 21674372 | 2011 |
Biogenesis and function of nuclear bodies. | Mao, Yuntao S; Zhang, Bin; Spector, David L | Trends in genetics : TIG | 21680045 | 2011 Aug |
Cell interactions with hierarchically structured nano-patterned adhesive surfaces. | Arnold, Marco; Schwieder, Marco; Blummel, Jacques; Cavalcanti-Adam, Elisabetta A; Lopez-Garcia, Monica; Kessler, Horst; Geiger, Benjamin; Spatz, Joachim P | Soft matter | 21686049 | 2009 Jan 7 |
Sampling multiple scoring functions can improve protein loop structure prediction accuracy. | Li, Yaohang; Rata, Ionel; Jakobsson, Eric | Journal of chemical information and modeling | 21702492 | 2011 Jul 25 |
MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map. | Tjioe, Elina; Lasker, Keren; Webb, Ben; Wolfson, Haim J; Sali, Andrej | Nucleic acids research | 21715383 | 2011 Jul |
Probing the thermodynamics of competitive ion binding using minimum energy structures. | Rogers, David M; Rempe, Susan B | The journal of physical chemistry. B | 21721551 | 2011 Jul 28 |
Dissection of the Burkholderia intracellular life cycle using a photothermal nanoblade. | French, Christopher T; Toesca, Isabelle J; Wu, Ting-Hsiang; Teslaa, Tara; Beaty, Shannon M; Wong, Wayne; Liu, Minghsun; Schroder, Imke; Chiou, Pei-Yu; Teitell, Michael A; Miller, Jeff F | Proceedings of the National Academy of Sciences of the United States of America | 21730143 | 2011 Jul 19 |
PKC-ýý function at the immunological synapse: prospects for therapeutic targeting. | Zanin-Zhorov, Alexandra; Dustin, Michael L; Blazar, Bruce R | Trends in immunology | 21733754 | 2011 Aug |
Sub-diffraction imaging of huntingtin protein aggregates by fluorescence blink-microscopy and atomic force microscopy. | Duim, Whitney C; Chen, Bryan; Frydman, Judith; Moerner, W E | Chemphyschem : a European journal of chemical physics and physical chemistry | 21735512 | 2011 Sep 12 |
A novel method for producing mono-biotinylated, biologically active neurotrophic factors: an essential reagent for single molecule study of axonal transport. | Sung, Kijung; Maloney, Michael T; Yang, Jingkun; Wu, Chengbiao | Journal of neuroscience methods | 21756937 | 2011 Sep 15 |
Subcellular resolution mapping of endogenous cytokine secretion by nano-plasmonic-resonator sensor array. | Wang, Sheng; Ota, Sadao; Guo, Bin; Ryu, Jongeun; Rhodes, Christopher; Xiong, Yi; Kalim, Sheraz; Zeng, Li; Chen, Yong; Teitell, Michael A; Zhang, Xiang | Nano letters | 21780816 | 2011 Aug 10 |
Self-assembly of phospholipid-PEG coating on nanoparticles through dual solvent exchange. | Tong, Sheng; Hou, Sijian; Ren, Binbin; Zheng, Zhilan; Bao, Gang | Nano letters | 21793503 | 2011 Sep 14 |
Chimeric antigen receptor-modified T cells in chronic lymphoid leukemia. | Porter, David L; Levine, Bruce L; Kalos, Michael; Bagg, Adam; June, Carl H | The New England journal of medicine | 21830940 | 2011 Aug 25 |
T cells with chimeric antigen receptors have potent antitumor effects and can establish memory in patients with advanced leukemia. | Kalos, Michael; Levine, Bruce L; Porter, David L; Katz, Sharyn; Grupp, Stephan A; Bagg, Adam; June, Carl H | Science translational medicine | 21832238 | 2011 Aug 10 |
Potent kinetic stabilizers that prevent transthyretin-mediated cardiomyocyte proteotoxicity. | Alhamadsheh, Mamoun M; Connelly, Stephen; Cho, Ahryon; Reixach, Natalia; Powers, Evan T; Pan, Dorothy W; Wilson, Ian A; Kelly, Jeffery W; Graef, Isabella A | Science translational medicine | 21865539 | 2011 Aug 24 |
Modeling of proteins and their assemblies with the integrative modeling platform. | Webb, Benjamin; Lasker, Keren; Schneidman-Duhovny, Dina; Tjioe, Elina; Phillips, Jeremy; Kim, Seung Joong; Velazquez-Muriel, Javier; Russel, Daniel; Sali, Andrej | Methods in molecular biology (Clifton, N.J.) | 21877292 | 2011 |
Rapid, massively parallel single-cell drug response measurements via live cell interferometry. | Reed, Jason; Chun, Jennifer; Zangle, Thomas A; Kalim, Sheraz; Hong, Jason S; Pefley, Sarah E; Zheng, Xin; Gimzewski, James K; Teitell, Michael A | Biophysical journal | 21889438 | 2011 Sep 7 |
Sensing cooperativity in ATP hydrolysis for single multisubunit enzymes in solution. | Jiang, Yan; Douglas, Nicholai R; Conley, Nicholas R; Miller, Erik J; Frydman, Judith; Moerner, W E | Proceedings of the National Academy of Sciences of the United States of America | 21896715 | 2011 Oct 11 |
New insights into the T cell synapse from single molecule techniques. | Dustin, Michael L; Depoil, David | Nature reviews. Immunology | 21904389 | 2011 Oct |
Control of Kaposi's sarcoma-associated herpesvirus reactivation induced by multiple signals. | Yu, Fuqu; Al-Shyoukh, Ibrahim; Feng, Jiaying; Li, Xudong; Liao, Chia Wei; Ho, Chih-Ming; Shamma, Jeff S; Sun, Ren | PloS one | 21904595 | 2011 |
Light-based feedback for controlling intracellular signaling dynamics. | Toettcher, Jared E; Gong, Delquin; Lim, Wendell A; Weiner, Orion D | Nature methods | 21909100 | 2011 |
Miniaturized integration of a fluorescence microscope. | Ghosh, Kunal K; Burns, Laurie D; Cocker, Eric D; Nimmerjahn, Axel; Ziv, Yaniv; Gamal, Abbas El; Schnitzer, Mark J | Nature methods | 21909102 | 2011 |
Developing defined culture systems for human pluripotent stem cells. | Valamehr, Bahram; Tsutsui, Hideaki; Ho, Chih-Ming; Wu, Hong | Regenerative medicine | 21916597 | 2011 Sep |
UCSF Chimera, MODELLER, and IMP: an integrated modeling system. | Yang, Zheng; Lasker, Keren; Schneidman-Duhovny, Dina; Webb, Ben; Huang, Conrad C; Pettersen, Eric F; Goddard, Thomas D; Meng, Elaine C; Sali, Andrej; Ferrin, Thomas E | Journal of structural biology | 21963794 | 2012 Sep |
Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE. | Qiu, Peng; Simonds, Erin F; Bendall, Sean C; Gibbs Jr, Kenneth D; Bruggner, Robert V; Linderman, Michael D; Sachs, Karen; Nolan, Garry P; Plevritis, Sylvia K | Nature biotechnology | 21964415 | 2011 Oct |
Rapidly optimizing an aptamer based BoNT sensor by feedback system control (FSC) scheme. | Wei, Fang; Bai, Bin; Ho, Chih-Ming | Biosensors & bioelectronics | 21993141 | 2011 Dec 15 |
Enhanced gene delivery to the neonatal retina through systemic administration of tyrosine-mutated AAV9. | Dalkara, D; Byrne, L C; Lee, T; Hoffmann, N V; Schaffer, D V; Flannery, J G | Gene therapy | 22011645 | 2012 Feb |
Self-amplifying autocrine actions of BDNF in axon development. | Cheng, Pei-Lin; Song, Ai-Hong; Wong, Yu-Hui; Wang, Sheng; Zhang, Xiang; Poo, Mu-Ming | Proceedings of the National Academy of Sciences of the United States of America | 22025720 | 2011 Nov 8 |
Microenvironmental geometry guides platelet adhesion and spreading: a quantitative analysis at the single cell level. | Kita, Ashley; Sakurai, Yumiko; Myers, David R; Rounsevell, Ross; Huang, James N; Seok, Tae Joon; Yu, Kyoungsik; Wu, Ming C; Fletcher, Daniel A; Lam, Wilbur A | PloS one | 22028878 | 2011 |
Fibroblast polarization is a matrix-rigidity-dependent process controlled by focal adhesion mechanosensing. | Prager-Khoutorsky, Masha; Lichtenstein, Alexandra; Krishnan, Ramaswamy; Rajendran, Kavitha; Mayo, Avi; Kam, Zvi; Geiger, Benjamin; Bershadsky, Alexander D | Nature cell biology | 22081092 | 2011 Dec |
Cellular mechanotransduction: filamin A strains to regulate motility. | Lynch, Christopher D; Sheetz, Michael P | Current biology : CB | 22115457 | 2011 Nov 22 |
Intranuclear delivery of a novel antibody-derived radiosensitizer targeting the DNA-dependent protein kinase catalytic subunit. | Xiong, Hairong; Lee, Robert J; Haura, Eric B; Edwards, John G; Dynan, William S; Li, Shuyi | International journal of radiation oncology, biology, physics | 22138455 | 2012 Jul 1 |
NANOSTRUCTURED PROBES FOR IN VIVO GENE DETECTION. | Bao, Gang; Santangelo, Phillip; Nitin, Nitin; Rhee, Won Jong | Nanomedicine : design and applications of magnetic nanomaterials, nanosensors, and nanosystems / Vijay K. Varadan, Linfeng Chen, Jining Xie | 22138717 | 2010 |
In vitro modeling of the microvascular occlusion and thrombosis that occur in hematologic diseases using microfluidic technology. | Tsai, Michelle; Kita, Ashley; Leach, Joseph; Rounsevell, Ross; Huang, James N; Moake, Joel; Ware, Russell E; Fletcher, Daniel A; Lam, Wilbur A | The Journal of clinical investigation | 22156199 | 2012 Jan 3 |
Mechanism of nucleotide sensing in group II chaperonins. | Pereira, Jose H; Ralston, Corie Y; Douglas, Nicholai R; Kumar, Ramya; Lopez, Tom; McAndrew, Ryan P; Knee, Kelly M; King, Jonathan A; Frydman, Judith; Adams, Paul D | The EMBO journal | 22193720 | 2012 Feb 1 |
Emergence of patterned activity in the developing zebrafish spinal cord. | Warp, Erica; Agarwal, Gautam; Wyart, Claire; Friedmann, Drew; Oldfield, Claire S; Conner, Alden; Del Bene, Filippo; Arrenberg, Aristides B; Baier, Herwig; Isacoff, Ehud Y | Current biology : CB | 22197243 | 2012 Jan 24 |
Optogenetic activation of LiGluR-expressing astrocytes evokes anion channel-mediated glutamate release. | Li, Dongdong; Herault, Karine; Isacoff, Ehud Y; Oheim, Martin; Ropert, Nicole | The Journal of physiology | 22219341 | 2012 Feb 15 |
Homologous recombination-based gene therapy for the primary immunodeficiencies. | Porteus, Matthew | Annals of the New York Academy of Sciences | 22236437 | 2011 Dec |
Zinc-finger nuclease-mediated gene correction using single AAV vector transduction and enhancement by Food and Drug Administration-approved drugs. | Ellis, B L; Hirsch, M L; Porter, S N; Samulski, R J; Porteus, M H | Gene therapy | 22257934 | 2013 Jan |
Optochemical control of genetically engineered neuronal nicotinic acetylcholine receptors. | Tochitsky, Ivan; Banghart, Matthew R; Mourot, Alexandre; Yao, Jennifer Z; Gaub, Benjamin; Kramer, Richard H; Trauner, Dirk | Nature chemistry | 22270644 | 2012 Feb |
Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies. | Russel, Daniel; Lasker, Keren; Webb, Ben; Velazquez-Muriel, Javier; Tjioe, Elina; Schneidman-Duhovny, Dina; Peterson, Bret; Sali, Andrej | PLoS biology | 22272186 | 2012 Jan |
Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency. | Bammes, Benjamin E; Rochat, Ryan H; Jakana, Joanita; Chen, Dong-Hua; Chiu, Wah | Journal of structural biology | 22285189 | 2012 Mar |
Investigating how peptide length and a pathogenic mutation modify the structural ensemble of amyloid beta monomer. | Lin, Yu-Shan; Bowman, Gregory R; Beauchamp, Kyle A; Pande, Vijay S | Biophysical journal | 22339868 | 2012 Jan 18 |
Mechanosensing in T lymphocyte activation. | Judokusumo, Edward; Tabdanov, Erdem; Kumari, Sudha; Dustin, Michael L; Kam, Lance C | Biophysical journal | 22339876 | 2012 Jan 18 |
Rapid optical control of nociception with an ion-channel photoswitch. | Mourot, Alexandre; Fehrentz, Timm; Le Feuvre, Yves; Smith, Caleb M; Herold, Christian; Dalkara, Deniz; Nagy, Frederic; Trauner, Dirk; Kramer, Richard H | Nature methods | 22343342 | 2012 Apr |
Dynamic microRNA gene transcription and processing during T cell development. | Kirigin, Francis F; Lindstedt, Kenneth; Sellars, Maclean; Ciofani, Maria; Low, Siao Li; Jones, Lachlan; Bell, Fiona; Pauli, Florencia; Bonneau, Richard; Myers, Richard M; Littman, Dan R; Chong, Mark M W | Journal of immunology (Baltimore, Md. : 1950) | 22379031 | 2012 Apr 1 |
Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair. | Kapp, Gregory T; Liu, Sen; Stein, Amelie; Wong, Derek T; Remenyi, Attila; Yeh, Brian J; Fraser, James S; Taunton, Jack; Lim, Wendell A; Kortemme, Tanja | Proceedings of the National Academy of Sciences of the United States of America | 22403064 | 2012 Apr 3 |
Receptor signaling clusters in the immune synapse. | Dustin, Michael L; Groves, Jay T | Annual review of biophysics | 22404679 | 2012 |
Supramolecular non-amyloid intermediates in the early stages of ýý-synuclein aggregation. | Fauerbach, Jonathan A; Yushchenko, Dmytro A; Shahmoradian, Sarah H; Chiu, Wah; Jovin, Thomas M; Jares-Erijman, Elizabeth A | Biophysical journal | 22404935 | 2012 Mar 7 |
Constructing and validating initial Cýý models from subnanometer resolution density maps with pathwalking. | Baker, Mariah R; Rees, Ian; Ludtke, Steven J; Chiu, Wah; Baker, Matthew L | Structure (London, England : 1993) | 22405004 | 2012 Mar 7 |
The role of feature curvature in contact guidance. | Mathur, Anurag; Moore, Simon W; Sheetz, Michael P; Hone, James | Acta biomaterialia | 22426288 | 2012 Jul |
The mitochondrial Na(+)/Ca(2+) exchanger. | Palty, Raz; Sekler, Israel | Cell calcium | 22430014 | 2012 Jul |
Cells test substrate rigidity by local contractions on submicrometer pillars. | Ghassemi, Saba; Meacci, Giovanni; Liu, Shuaimin; Gondarenko, Alexander A; Mathur, Anurag; Roca-Cusachs, Pere; Sheetz, Michael P; Hone, James | Proceedings of the National Academy of Sciences of the United States of America | 22431603 | 2012 Apr 3 |
Incorporation of noncanonical amino acids into Rosetta and use in computational protein-peptide interface design. | Renfrew, P Douglas; Choi, Eun Jung; Bonneau, Richard; Kuhlman, Brian | PloS one | 22431978 | 2012 |
Imaging of HIV-1 envelope-induced virological synapse and signaling on synthetic lipid bilayers. | Prins, Kathleen C; Vasiliver-Shamis, Gaia; Cammer, Michael; Depoil, David; Dustin, Michael L; Hioe, Catarina E | Journal of visualized experiments : JoVE | 22433250 | 2012 |
Evaluation of end-capped DNA modules for pRNA capture and functionalization. | Laing, Brian M; Bergstrom, Donald E | Bioconjugate chemistry | 22443238 | 2012 Apr 18 |
Quantum dot-fluorescent protein FRET probes for sensing intracellular pH. | Dennis, Allison M; Rhee, Won Jong; Sotto, David; Dublin, Steven N; Bao, Gang | ACS nano | 22443420 | 2012 Apr 24 |
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The molecular architecture of the eukaryotic chaperonin TRiC/CCT. | Leitner, Alexander; Joachimiak, Lukasz A; Bracher, Andreas; Monkemeyer, Leonie; Walzthoeni, Thomas; Chen, Bryan; Pechmann, Sebastian; Holmes, Susan; Cong, Yao; Ma, Boxue; Ludtke, Steve; Chiu, Wah; Hartl, F Ulrich; Aebersold, Ruedi; Frydman, Judith | Structure (London, England : 1993) | 22503819 | 2012 May 9 |
Assembly stoichiometry of the GluK2/GluK5 kainate receptor complex. | Reiner, Andreas; Arant, Ryan J; Isacoff, Ehud Y | Cell reports | 22509486 | 2012 Mar 29 |
Protein misfolding and aggregation in cataract disease and prospects for prevention. | Moreau, Kate L; King, Jonathan A | Trends in molecular medicine | 22520268 | 2012 May |
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SYNZIP protein interaction toolbox: in vitro and in vivo specifications of heterospecific coiled-coil interaction domains. | Thompson, Kenneth Evan; Bashor, Caleb J; Lim, Wendell A; Keating, Amy E | ACS synthetic biology | 22558529 | 2012 Apr 20 |
Regulation of integrin adhesions by varying the density of substrate-bound epidermal growth factor. | Shahal, Tamar; Geiger, Benjamin; Dunlop, Iain E; Spatz, Joachim P | Biointerphases | 22589066 | 2012 Dec |
Probing single biomolecules in solution using the anti-Brownian electrokinetic (ABEL) trap. | Wang, Quan; Goldsmith, Randall H; Jiang, Yan; Bockenhauer, Samuel D; Moerner, W E | Accounts of chemical research | 22616716 | 2012 Nov 20 |
Reversible regulation of aptamer activity with effector-responsive hairpin oligonucleotides. | Li, Na | Journal of laboratory automation | 22651934 | 2013 Feb |
Cascade search for HSV-1 combinatorial drugs with high antiviral efficacy and low toxicity. | Ding, Xianting; Sanchez, David Jesse; Shahangian, Arash; Al-Shyoukh, Ibrahim; Cheng, Genhong; Ho, Chih-Ming | International journal of nanomedicine | 22654513 | 2012 |
Cognitive and pharmacological insights from the Ts65Dn mouse model of Down syndrome. | Ruparelia, Aarti; Pearn, Matthew L; Mobley, William C | Current opinion in neurobiology | 22658745 | 2012 Oct |
F-actin polymerization and retrograde flow drive sustained PLCýý1 signaling during T cell activation. | Babich, Alexander; Li, Shuixing; O'Connor, Roddy S; Milone, Michael C; Freedman, Bruce D; Burkhardt, Janis K | The Journal of cell biology | 22665519 | 2012 Jun 11 |
Tunable oscillations in the Purkinje neuron. | Abrams, Ze'ev R; Warrier, Ajithkumar; Wang, Yuan; Trauner, Dirk; Zhang, Xiang | Physical review. E, Statistical, nonlinear, and soft matter physics | 22680496 | 2012 Apr |
Optical control of endogenous proteins with a photoswitchable conditional subunit reveals a role for TREK1 in GABA(B) signaling. | Sandoz, Guillaume; Levitz, Joshua; Kramer, Richard H; Isacoff, Ehud Y | Neuron | 22726831 | 2012 Jun 21 |
Substrate rigidity regulates human T cell activation and proliferation. | O'Connor, Roddy S; Hao, Xueli; Shen, Keyue; Bashour, Keenan; Akimova, Tatiana; Hancock, Wayne W; Kam, Lance C; Milone, Michael C | Journal of immunology (Baltimore, Md. : 1950) | 22732590 | 2012 Aug 1 |
Push through one-way valve mechanism of viral DNA packaging. | Zhang, Hui; Schwartz, Chad; De Donatis, Gian Marco; Guo, Peixuan | Advances in virus research | 22748815 | 2012 |
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Systematic functional prioritization of protein posttranslational modifications. | Beltrao, Pedro; Albanese, Veronique; Kenner, Lillian R; Swaney, Danielle L; Burlingame, Alma; Villen, Judit; Lim, Wendell A; Fraser, James S; Frydman, Judith; Krogan, Nevan J | Cell | 22817900 | 2012 Jul 20 |
Bacterial virulence proteins as tools to rewire kinase pathways in yeast and immune cells. | Wei, Ping; Wong, Wilson W; Park, Jason S; Corcoran, Ethan E; Peisajovich, Sergio G; Onuffer, James J; Weiss, Arthur; Lim, Wendell A | Nature | 22820255 | 2012 Aug 16 |
Photonic gene circuits by optically addressable siRNA-Au nanoantennas. | Lee, Somin Eunice; Sasaki, Darryl Y; Park, Younggeun; Xu, Ren; Brennan, James S; Bissell, Mina J; Lee, Luke P | ACS nano | 22827439 | 2012 Sep 25 |
Photochemical restoration of visual responses in blind mice. | Polosukhina, Aleksandra; Litt, Jeffrey; Tochitsky, Ivan; Nemargut, Joseph; Sychev, Yivgeny; De Kouchkovsky, Ivan; Huang, Tracy; Borges, Katharine; Trauner, Dirk; Van Gelder, Russell N; Kramer, Richard H | Neuron | 22841312 | 2012 Jul 26 |
Enhanced ýý-secretase processing alters APP axonal transport and leads to axonal defects. | Rodrigues, Elizabeth M; Weissmiller, April M; Goldstein, Lawrence S B | Human molecular genetics | 22843498 | 2012 Nov 1 |
Circular, nanostructured and biofunctionalized hydrogel microchannels for dynamic cell adhesion studies. | Kruss, Sebastian; Erpenbeck, Luise; Schon, Michael P; Spatz, Joachim P | Lab on a chip | 22858992 | 2012 Sep 21 |
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Methylene blue modulates huntingtin aggregation intermediates and is protective in Huntington's disease models. | Sontag, Emily Mitchell; Lotz, Gregor P; Agrawal, Namita; Tran, Andrew; Aron, Rebecca; Yang, Guocheng; Necula, Mihaela; Lau, Alice; Finkbeiner, Steven; Glabe, Charles; Marsh, J Lawrence; Muchowski, Paul J; Thompson, Leslie M | The Journal of neuroscience : the official journal of the Society for Neuroscience | 22875942 | 2012 Aug 8 |
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Activation of specific interneurons improves V1 feature selectivity and visual perception. | Lee, Seung-Hee; Kwan, Alex C; Zhang, Siyu; Phoumthipphavong, Victoria; Flannery, John G; Masmanidis, Sotiris C; Taniguchi, Hiroki; Huang, Z Josh; Zhang, Feng; Boyden, Edward S; Deisseroth, Karl; Dan, Yang | Nature | 22878719 | 2012 Aug 16 |
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Uniqueness, advantages, challenges, solutions, and perspectives in therapeutics applying RNA nanotechnology. | Guo, Peixuan; Haque, Farzin; Hallahan, Brent; Reif, Randall; Li, Hui | Nucleic acid therapeutics | 22913595 | 2012 Aug |
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Investigative and clinical applications of synthetic immune synapses. | Milone, Michael C; Kam, Lance C | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 22927243 | 2013 Jan-Feb |
Suppressing T cell motility induced by anti-CTLA-4 monotherapy improves antitumor effects. | Ruocco, Maria Grazia; Pilones, Karsten A; Kawashima, Noriko; Cammer, Michael; Huang, Julie; Babb, James S; Liu, Mengling; Formenti, Silvia C; Dustin, Michael L; Demaria, Sandra | The Journal of clinical investigation | 22945631 | 2012 Oct 1 |
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Transcriptional insights into the CD8(+) T cell response to infection and memory T cell formation. | Best, J Adam; Blair, David A; Knell, Jamie; Yang, Edward; Mayya, Viveka; Doedens, Andrew; Dustin, Michael L; Goldrath, Ananda W; Immunological Genome Project Consortium | Nature immunology | 23396170 | 2013 Apr |
A genome-wide RNA interference screen identifies new regulators of androgen receptor function in prostate cancer cells. | Imberg-Kazdan, Keren; Ha, Susan; Greenfield, Alex; Poultney, Christopher S; Bonneau, Richard; Logan, Susan K; Garabedian, Michael J | Genome research | 23403032 | 2013 Apr |
Imaging light responses of retinal ganglion cells in the living mouse eye. | Yin, Lu; Geng, Ying; Osakada, Fumitaka; Sharma, Robin; Cetin, Ali H; Callaway, Edward M; Williams, David R; Merigan, William H | Journal of neurophysiology | 23407356 | 2013 May |
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Optical control of metabotropic glutamate receptors. | Levitz, Joshua; Pantoja, Carlos; Gaub, Benjamin; Janovjak, Harald; Reiner, Andreas; Hoagland, Adam; Schoppik, David; Kane, Brian; Stawski, Philipp; Schier, Alexander F; Trauner, Dirk; Isacoff, Ehud Y | Nature neuroscience | 23455609 | 2013 Apr |
AMPA receptor/TARP stoichiometry visualized by single-molecule subunit counting. | Hastie, Peter; Ulbrich, Maximilian H; Wang, Hui-Li; Arant, Ryan J; Lau, Anthony G; Zhang, Zhenjie; Isacoff, Ehud Y; Chen, Lu | Proceedings of the National Academy of Sciences of the United States of America | 23479622 | 2013 Mar 26 |
Dynamic regulation of the structure and functions of integrin adhesions. | Wolfenson, Haguy; Lavelin, Irena; Geiger, Benjamin | Developmental cell | 23484852 | 2013 Mar 11 |
Solid-State and Biological Nanopore for Real-Time Sensing of Single Chemical and Sequencing of DNA. | Haque, Farzin; Li, Jinghong; Wu, Hai-Chen; Liang, Xing-Jie; Guo, Peixuan | Nano today | 23504223 | 2013 Feb |
Parametric Bayesian priors and better choice of negative examples improve protein function prediction. | Youngs, Noah; Penfold-Brown, Duncan; Drew, Kevin; Shasha, Dennis; Bonneau, Richard | Bioinformatics (Oxford, England) | 23511543 | 2013 May 1 |
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Different mechanisms regulate productive herpes simplex virus 1 (HSV-1) and HSV-2 infections in adult trigeminal neurons. | Bertke, Andrea S; Ma, AyeAye; Margolis, Mathew S; Margolis, Todd P | Journal of virology | 23514893 | 2013 Jun |
Integrin-dependent force transmission to the extracellular matrix by ýý-actinin triggers adhesion maturation. | Roca-Cusachs, Pere; del Rio, Armando; Puklin-Faucher, Eileen; Gauthier, Nils C; Biais, Nicolas; Sheetz, Michael P | Proceedings of the National Academy of Sciences of the United States of America | 23515331 | 2013 Apr 9 |
Light at the end of the channel: optical manipulation of intrinsic neuronal excitability with chemical photoswitches. | Mourot, Alexandre; Tochitsky, Ivan; Kramer, Richard H | Frontiers in molecular neuroscience. | 23518818 | 2013; |
Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks. | Greenfield, Alex; Hafemeister, Christoph; Bonneau, Richard | Bioinformatics (Oxford, England) | 23525069 | 2013 Apr 15 |
Coffee ring aptasensor for rapid protein detection. | Wen, Jessica T; Ho, Chih-Ming; Lillehoj, Peter B | Langmuir : the ACS journal of surfaces and colloids | 23540796 | 2013 Jul 2 |
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Cryo-EM model validation using independent map reconstructions. | DiMaio, Frank; Zhang, Junjie; Chiu, Wah; Baker, David | Protein science : a publication of the Protein Society | 23592445 | 2013 Jun |
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Human CCT4 and CCT5 chaperonin subunits expressed in Escherichia coli form biologically active homo-oligomers. | Sergeeva, Oksana A; Chen, Bo; Haase-Pettingell, Cameron; Ludtke, Steven J; Chiu, Wah; King, Jonathan A | The Journal of biological chemistry | 23612981 | 2013 Jun 14 |
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Multifunctional nanoparticles for drug delivery and molecular imaging. | Bao, Gang; Mitragotri, Samir; Tong, Sheng | Annual review of biomedical engineering | 23642243 | 2013 |
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Ultrastable pRNA hexameric ring gearing hexameric phi29 DNA-packaging motor by revolving without rotating and coiling. | Schwartz, Chad; Guo, Peixuan | Current opinion in biotechnology | 23683853 | 2013 Aug |
Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE). | Lyskov, Sergey; Chou, Fang-Chieh; Conchuir, Shane O; Der, Bryan S; Drew, Kevin; Kuroda, Daisuke; Xu, Jianqing; Weitzner, Brian D; Renfrew, P Douglas; Sripakdeevong, Parin; Borgo, Benjamin; Havranek, James J; Kuhlman, Brian; Kortemme, Tanja; Bonneau, Richa | PloS one | 23717507 | 2013 |
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Visualizing GroEL/ES in the act of encapsulating a folding protein. | Chen, Dong-Hua; Madan, Damian; Weaver, Jeremy; Lin, Zong; Schroder, Gunnar F; Chiu, Wah; Rye, Hays S | Cell | 23746846 | 2013 Jun 6 |
Ion selectivity from local configurations of ligands in solutions and ion channels. | Asthagiri, D; Dixit, P D; Merchant, S; Paulaitis, M E; Pratt, L R; Rempe, S B; Varma, S | Chemical physics letters | 23750043 | 2010 Jan 18 |
High-contrast fluorescence imaging in fixed and living cells using optimized optical switches. | Wu, Liangxing; Dai, Yingrui; Jiang, Xiaoli; Petchprayoon, Chutima; Lee, Jessie E; Jiang, Tao; Yan, Yuling; Marriott, Gerard | PloS one | 23755140 | 2013 |
In vivo-directed evolution of a new adeno-associated virus for therapeutic outer retinal gene delivery from the vitreous. | Dalkara, Deniz; Byrne, Leah C; Klimczak, Ryan R; Visel, Meike; Yin, Lu; Merigan, William H; Flannery, John G; Schaffer, David V | Science translational medicine | 23761039 | 2013 Jun 12 |
Electrical impedance monitoring of photothermal porated mammalian cells. | Yamane, Daisuke; Wu, Yi-Chien; Wu, Ting-Hsiang; Toshiyoshi, Hiroshi; Teitell, Michael A; Chiou, Pei-Yu | Journal of laboratory automation | 23797097 | 2014 Feb |
Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling. | Baker, Matthew L; Hryc, Corey F; Zhang, Qinfen; Wu, Weimin; Jakana, Joanita; Haase-Pettingell, Cameron; Afonine, Pavel V; Adams, Paul D; King, Jonathan A; Jiang, Wen; Chiu, Wah | Proceedings of the National Academy of Sciences of the United States of America | 23840063 | 2013 Jul 23 |
Micro- and nanoscale engineering of cell signaling. | Kam, L C; Shen, K; Dustin, M L | Annual review of biomedical engineering | 23862677 | 2013 |
Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design. | Drew, Kevin; Renfrew, P Douglas; Craven, Timothy W; Butterfoss, Glenn L; Chou, Fang-Chieh; Lyskov, Sergey; Bullock, Brooke N; Watkins, Andrew; Labonte, Jason W; Pacella, Michael; Kilambi, Krishna Praneeth; Leaver-Fay, Andrew; Kuhlman, Brian; Gray, Jeffrey | PloS one | 23869206 | 2013 |
Targeting H3K4 trimethylation in Huntington disease. | Vashishtha, Malini; Ng, Christopher W; Yildirim, Ferah; Gipson, Theresa A; Kratter, Ian H; Bodai, Laszlo; Song, Wan; Lau, Alice; Labadorf, Adam; Vogel-Ciernia, Annie; Troncosco, Juan; Ross, Christopher A; Bates, Gillian P; Krainc, Dimitri; Sadri-Vakili, G | Proceedings of the National Academy of Sciences of the United States of America | 23872847 | 2013 Aug 6 |
DNA targeting specificity of RNA-guided Cas9 nucleases. | Hsu, Patrick D; Scott, David A; Weinstein, Joshua A; Ran, F Ann; Konermann, Silvana; Agarwala, Vineeta; Li, Yinqing; Fine, Eli J; Wu, Xuebing; Shalem, Ophir; Cradick, Thomas J; Marraffini, Luciano A; Bao, Gang; Zhang, Feng | Nature biotechnology | 23873081 | 2013 Sep |
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Hydrogel Micropillars with Integrin Selective Peptidomimetic Functionalized Nanopatterned Tops: A New Tool for the Measurement of Cell Traction Forces Transmitted through *v *3 - or *5 *1 -Integrins. | Rahmouni, Sabri; Lindner, Aaron; Rechenmacher, Florian; Neubauer, Stefanie; Sobahi, Tariq Rashad Ali; Kessler, Horst; Cavalcanti-Adam, Elisabetta Ada; Spatz, Joachim Pius | Advanced materials (Deerfield Beach, Fla.) | 23913640 | 2013 Aug 5 |
Quantification of biomass and cell motion in human pluripotent stem cell colonies. | Zangle, Thomas A; Chun, Jennifer; Zhang, Jin; Reed, Jason; Teitell, Michael A | Biophysical journal | 23931307 | 2013 Aug 6 |
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CRISPR/Cas9 systems targeting *-globin and CCR5 genes have substantial off-target activity. | Cradick, Thomas J; Fine, Eli J; Antico, Christopher J; Bao, Gang | Nucleic acids research | 23939622 | 2013 Nov 1 |
Aging and intellectual disability: Insights from mouse models of down syndrome. | Ruparelia, Aarti; Pearn, Matthew L; Mobley, William C | Developmental disabilities research reviews | 23949828 | 2013 Aug |
Exploitation of latent allostery enables the evolution of new modes of MAP kinase regulation. | Coyle, Scott M; Flores, Jonathan; Lim, Wendell A | Cell | 23953117 | 2013 Aug 15 |
Receptor-mediated delivery of engineered nucleases for genome modification. | Chen, Zhong; Jaafar, Lahcen; Agyekum, Davies G; Xiao, Haiyan; Wade, Marlene F; Kumaran, R Ileng; Spector, David L; Bao, Gang; Porteus, Matthew H; Dynan, William S; Meiler, Steffen E | Nucleic acids research | 23956220 | 2013 Oct |
Accurate SAXS profile computation and its assessment by contrast variation experiments. | Schneidman-Duhovny, Dina; Hammel, Michal; Tainer, John A; Sali, Andrej | Biophysical journal | 23972848 | 2013 Aug 20 |
Single-cell mass cytometry for analysis of immune system functional states. | Bjornson, Zach B; Nolan, Garry P; Fantl, Wendy J | Current opinion in immunology | 23999316 | 2013 Aug |
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Differential effect of actomyosin relaxation on the dynamic properties of focal adhesion proteins. | Lavelin, Irena; Wolfenson, Haguy; Patla, Israel; Henis, Yoav I; Medalia, Ohad; Volberg, Tova; Livne, Ariel; Kam, Zvi; Geiger, Benjamin | PloS one | 24039980 | 2013 |
Modernizing the nonhomologous end-joining repertoire: alternative and classical NHEJ share the stage. | Deriano, Ludovic; Roth, David B | Annual review of genetics | 24050180 | 2013 |
The Brain Prize 2013: the optogenetics revolution. | Reiner, Andreas; Isacoff, Ehud Y | Trends in neurosciences | 24054067 | 2013 Oct |
Intracellular delivery of top-down fabricated tunable nano-plasmonic resonators. | Ota, Sadao; Wang, Sheng; Ryu, Jongeun; Wang, Yuan; Chen, Yong; Zhang, Xiang | Nanoscale | 24056760 | 2013 Nov 7 |
Actin dynamics rapidly reset chemoattractant receptor sensitivity following adaptation in neutrophils. | Dandekar, Sheel N; Park, Jason S; Peng, Grace E; Onuffer, James J; Lim, Wendell A; Weiner, Orion D | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 24062580 | 2013 |
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Visualizing virus assembly intermediates inside marine cyanobacteria. | Dai, Wei; Fu, Caroline; Raytcheva, Desislava; Flanagan, John; Khant, Htet A; Liu, Xiangan; Rochat, Ryan H; Haase-Pettingell, Cameron; Piret, Jacqueline; Ludtke, Steve J; Nagayama, Kuniaki; Schmid, Michael F; King, Jonathan A; Chiu, Wah | Nature | 24107993 | 2013 Oct 31 |
T cell activation is determined by the number of presented antigens. | Deeg, Janosch; Axmann, Markus; Matic, Jovana; Liapis, Anastasia; Depoil, David; Afrose, Jehan; Curado, Silvia; Dustin, Michael L; Spatz, Joachim P | Nano letters | 24117051 | 2013 Nov 13 |
Nanoscale ligand spacing influences receptor triggering in T cells and NK cells. | Delcassian, Derfogail; Depoil, David; Rudnicka, Dominika; Liu, Mengling; Davis, Daniel M; Dustin, Michael L; Dunlop, Iain E | Nano letters | 24125583 | 2013 Nov 13 |
Nuclease-mediated gene editing by homologous recombination of the human globin locus. | Voit, Richard A; Hendel, Ayal; Pruett-Miller, Shondra M; Porteus, Matthew H | Nucleic acids research | 24157834 | 2014 Jan |
A red-shifted, fast-relaxing azobenzene photoswitch for visible light control of an ionotropic glutamate receptor. | Kienzler, Michael A; Reiner, Andreas; Trautman, Eric; Yoo, Stan; Trauner, Dirk; Isacoff, Ehud Y | Journal of the American Chemical Society | 24171511 | 2013 Nov 27 |
Modeling of proteins and their assemblies with the Integrative Modeling Platform. | Webb, Benjamin; Lasker, Keren; Velazquez-Muriel, Javier; Schneidman-Duhovny, Dina; Pellarin, Riccardo; Bonomi, Massimiliano; Greenberg, Charles; Raveh, Barak; Tjioe, Elina; Russel, Daniel; Sali, Andrej | Methods in molecular biology (Clifton, N.J.) | 24203340 | 2014 |
Reprogramming an ATP-driven protein machine into a light-gated nanocage. | Hoersch, Daniel; Roh, Soung-Hun; Chiu, Wah; Kortemme, Tanja | Nature nanotechnology | 24270642 | 2013 Dec |
Nanomedicine: tiny particles and machines give huge gains. | Tong, Sheng; Fine, Eli J; Lin, Yanni; Cradick, Thomas J; Bao, Gang | Annals of biomedical engineering | 24297494 | 2014 Feb |
Guiding the osteogenic fate of mouse and human mesenchymal stem cells through feedback system control. | Honda, Yoshitomo; Ding, Xianting; Mussano, Federico; Wiberg, Akira; Ho, Chih-Ming; Nishimura, Ichiro | Scientific reports | 24305548 | 2013 |
Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module. | Toettcher, Jared E; Weiner, Orion D; Lim, Wendell A | Cell | 24315106 | 2013 Dec 5 |
Focal damage to macaque photoreceptors produces persistent visual loss. | Strazzeri, Jennifer M; Hunter, Jennifer J; Masella, Benjamin D; Yin, Lu; Fischer, William S; DiLoreto Jr, David A; Libby, Richard T; Williams, David R; Merigan, William H | Experimental eye research | 24316158 | 2014 Feb |
FHOD1 is needed for directed forces and adhesion maturation during cell spreading and migration. | Iskratsch, Thomas; Yu, Cheng-Han; Mathur, Anurag; Liu, Shuaimin; Stevenin, Virginie; Dwyer, Joseph; Hone, James; Ehler, Elisabeth; Sheetz, Michael | Developmental cell | 24331927 | 2013 Dec 9 |
Cross talk between CD3 and CD28 is spatially modulated by protein lateral mobility. | Bashour, Keenan T; Tsai, Jones; Shen, Keyue; Lee, Joung-Hyun; Sun, Eileen; Milone, Michael C; Dustin, Michael L; Kam, Lance C | Molecular and cellular biology | 24379441 | 2014 Mar |
An online bioinformatics tool predicts zinc finger and TALE nuclease off-target cleavage. | Fine, Eli J; Cradick, Thomas J; Zhao, Charles L; Lin, Yanni; Bao, Gang | Nucleic acids research | 24381193 | 2014 Apr |
Local plasticity of dendritic excitability can be autonomous of synaptic plasticity and regulated by activity-based phosphorylation of Kv4.2. | Labno, Anna; Warrier, Ajithkumar; Wang, Sheng; Zhang, Xiang | PloS one | 24404150 | 2014 |
Pseudomonas aeruginosa Homoserine Lactone Triggers Apoptosis and Bak/Bax-Independent Release of Mitochondrial Cytochrome C in Fibroblasts. | Schwarzer, Christian; Fu, Zhu; Shuai, Stacey; Babbar, Salil; Zhao, Guoping; Li, Chi; Machen, Terry E | Cellular microbiology | 24438098 | 2014 Jan 20 |
SAPTA: a new design tool for improving TALE nuclease activity. | Lin, Yanni; Fine, Eli J; Zheng, Zhilan; Antico, Christopher J; Voit, Richard A; Porteus, Matthew H; Cradick, Thomas J; Bao, Gang | Nucleic acids research | 24442582 | 2014 Apr |
CD28 and CD3 have complementary roles in T-cell traction forces. | Bashour, Keenan T; Gondarenko, Alexander; Chen, Haoqian; Shen, Keyue; Liu, Xin; Huse, Morgan; Hone, James C; Kam, Lance C | Proceedings of the National Academy of Sciences of the United States of America | 24469820 | 2014 Feb 11 |
N-WASP-directed actin polymerization activates Cas phosphorylation and lamellipodium spreading. | Zhang, Xian; Moore, Simon W; Iskratsch, Thomas; Sheetz, Michael P | Journal of cell science | 24481817 | 2014 Apr 1 |
Micropatterned, multicomponent supported lipid bilayers for cellular systems. | Dutta, Debjit; Kam, Lance C | Methods in cell biology | 24484657 | 2014 |
Polarized release of T-cell-receptor-enriched microvesicles at the immunological synapse. | Choudhuri, Kaushik; Llodra, Jaime; Roth, Eric W; Tsai, Jones; Gordo, Susana; Wucherpfennig, Kai W; Kam, Lance C; Stokes, David L; Dustin, Michael L | Nature | 24487619 | 2014 Mar 6 |
Secreting and sensing the same molecule allows cells to achieve versatile social behaviors. | Youk, Hyun; Lim, Wendell A | Science (New York, N.Y.) | 24503857 | 2014 Feb 7 |
Frontiers in bioengineering research. | Bao, Gang; Nerem, Robert M | Annals of biomedical engineering. | 24510229 | 2014 Feb; |
Adeno-associated virus vectors and neurological gene therapy. | Ojala, David S; Amara, Dominic P; Schaffer, David V | The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. | 24557878 | 2015 Feb; |
Designing and testing the activities of TAL effector nucleases. | Lin, Yanni; Cradick, Thomas J; Bao, Gang | Methods in molecular biology (Clifton, N.J.) | 24557905 | 2014 |
An unbiased method for detection of genome-wide off-target effects in cell lines treated with zinc finger nucleases. | Lindsay, Cory R; Roth, David B | Methods in molecular biology (Clifton, N.J.) | 24557915 | 2014 |
Identification of off-target cleavage sites of zinc finger nucleases and TAL effector nucleases using predictive models. | Fine, Eli J; Cradick, Thomas J; Bao, Gang | Methods in molecular biology (Clifton, N.J.) | 24557916 | 2014 |
Restoring Visual Function to Blind Mice with a Photoswitch that Exploits Electrophysiological Remodeling of Retinal Ganglion Cells. | Tochitsky, Ivan; Polosukhina, Aleksandra; Degtyar, Vadim E; Gallerani, Nicholas; Smith, Caleb M; Friedman, Aaron; Van Gelder, Russell N; Trauner, Dirk; Kaufer, Daniela; Kramer, Richard H | Neuron | 24559673 | 2014 Feb 19 |
Tethered ligands reveal glutamate receptor desensitization depends on subunit occupancy. | Reiner, Andreas; Isacoff, Ehud Y | Nature chemical biology | 24561661 | 2014 Apr |
Preparation of primary neurons for visualizing neurites in a frozen-hydrated state using cryo-electron tomography. | Shahmoradian, Sarah H; Galiano, Mauricio R; Wu, Chengbiao; Chen, Shurui; Rasband, Matthew N; Mobley, William C; Chiu, Wah | Journal of visualized experiments : JoVE | 24561719 | 2014 |
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Thapsigargin blocks Pseudomonas aeruginosa homoserine lactone-induced apoptosis in airway epithelia. | Schwarzer, Christian; Ravishankar, Bharat; Patanwala, Maria; Shuai, Stacey; Fu, Zhu; Illek, Beate; Fischer, Horst; Machen, Terry E | American journal of physiology. Cell physiology | 24598360 | 2014 May 1 |
Group II archaeal chaperonin recognition of partially folded human ýýD-crystallin mutants. | Sergeeva, Oksana A; Yang, Jingkun; King, Jonathan A; Knee, Kelly M | Protein science : a publication of the Protein Society | 24615724 | 2014 Mar 10 |
A molecular interpretation of 2D IR protein folding experiments with Markov state models. | Baiz, Carlos R; Lin, Yu-Shan; Peng, Chunte Sam; Beauchamp, Kyle A; Voelz, Vincent A; Pande, Vijay S; Tokmakoff, Andrei | Biophysical journal | 24655511 | 2014 Mar 18 |
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Experience, circuit dynamics, and forebrain recruitment in larval zebrafish prey capture. | Oldfield, Claire S; Grossrubatscher, Irene; Chávez, Mario; Hoagland, Adam; Huth, Alex R; Carroll, Elizabeth C; Prendergast, Andrew; Qu, Tony; Gallant, Jack L; Wyart, Claire; Isacoff, Ehud Y | eLife. | 32985972 | 2020 09 28; |
Photochemical Restoration of Light Sensitivity in the Degenerated Canine Retina. | Nikonov, Sergei; Dolgova, Natalia; Sudharsan, Raghavi; Tochitsky, Ivan; Iwabe, Simone; Guzman, Jose-Manuel; Van Gelder, Russell N; Kramer, Richard H; Aguirre, Gustavo D; Beltran, William A | Pharmaceutics | 36559205 | 2022 Dec 03 |