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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date | PubMedLink |
|---|---|---|---|---|---|---|
| Examination of CRISPR/Cas9 design tools and the effect of target site accessibility on Cas9 activity. | Lee CM, Davis TH, Bao G | Experimental physiology | 28303677 | Exp Physiol | 2018 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/28303677 |
| Developmental regulation of myeloerythroid progenitor function by the Lin28b-let-7-Hmga2 axis. | Rowe RG, Wang LD, Coma S, Han A, Mathieu R, Pearson DS, Ross S, Sousa P, Nguyen PT, Rodriguez A, Wagers AJ, Daley GQ | The Journal of experimental medicine | 27401346 | J Exp Med | 2016 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/27401346 |
| In vivo gene editing in dystrophic mouse muscle and muscle stem cells. | Tabebordbar M, Zhu K, Cheng JKW, Chew WL, Widrick JJ, Yan WX, Maesner C, Wu EY, Xiao R, Ran FA, Cong L, Zhang F, Vandenberghe LH, Church GM, Wagers AJ | Science (New York, N.Y.) | 26721686 | Science | 2016 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/26721686 |
| TALENs Facilitate Single-step Seamless SDF Correction of F508del CFTR in Airway Epithelial Submucosal Gland Cell-derived CF-iPSCs. | Suzuki S, Sargent RG, Illek B, Fischer H, Esmaeili-Shandiz A, Yezzi MJ, Lee A, Yang Y, Kim S, Renz P, Qi Z, Yu J, Muench MO, Beyer AI, Guimarães AO, Ye L, Chang J, Fine EJ, Cradick TJ, Bao G, Rahdar M, Porteus MH, Shuto T, Kai H, Kan YW, Gruenert DC | Molecular therapy. Nucleic acids | 26730810 | Mol Ther Nucleic Acids | 2016 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/26730810 |
| Intracellular delivery of molecules using microfabricated nanoneedle arrays. | Park S, Choi SO, Paik SJ, Choi S, Allen M, Prausnitz M | Biomedical microdevices | 26797026 | Biomed Microdevices | 2016 Feb | https://www.ncbi.nlm.nih.gov/pubmed/26797026 |
| Streptococcus thermophilus CRISPR-Cas9 Systems Enable Specific Editing of the Human Genome. | Müller M, Lee CM, Gasiunas G, Davis TH, Cradick TJ, Siksnys V, Bao G, Cathomen T, Mussolino C | Molecular therapy : the journal of the American Society of Gene Therapy | 26658966 | Mol Ther | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26658966 |
| Nuclease-mediated gene editing by homologous recombination of the human globin locus. | Voit RA, Hendel A, Pruett-Miller SM, Porteus MH | Nucleic acids research | 24157834 | Nucleic Acids Res | 2014 Jan | https://www.ncbi.nlm.nih.gov/pubmed/24157834 |
| Receptor-mediated delivery of engineered nucleases for genome modification. | Chen Z, Jaafar L, Agyekum DG, Xiao H, Wade MF, Kumaran RI, Spector DL, Bao G, Porteus MH, Dynan WS, Meiler SE | Nucleic acids research | 23956220 | Nucleic Acids Res | 2013 Oct | https://www.ncbi.nlm.nih.gov/pubmed/23956220 |
| Self-assembly of phospholipid-PEG coating on nanoparticles through dual solvent exchange. | Tong S, Hou S, Ren B, Zheng Z, Bao G | Nano letters | 21793503 | Nano Lett | 2011 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/21793503 |
| Tuning the optical and electronic properties of colloidal nanocrystals by lattice strain. | Smith AM, Mohs AM, Nie S | Nature nanotechnology | 19119284 | Nat Nanotechnol | 2009 Jan | https://www.ncbi.nlm.nih.gov/pubmed/19119284 |
| Semiconductor nanocrystals: structure, properties, and band gap engineering. | Smith AM, Nie S | Accounts of chemical research | 19827808 | Acc Chem Res | 2010 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/19827808 |
| Bioconjugated quantum dots for in vivo molecular and cellular imaging. | Smith AM, Duan H, Mohs AM, Nie S | Advanced drug delivery reviews | 18495291 | Adv Drug Deliv Rev | 2008 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/18495291 |
| In vitro modeling of the microvascular occlusion and thrombosis that occur in hematologic diseases using microfluidic technology. | Tsai M, Kita A, Leach J, Rounsevell R, Huang JN, Moake J, Ware RE, Fletcher DA, Lam WA | The Journal of clinical investigation | 22156199 | J Clin Invest | 2012 Jan | https://www.ncbi.nlm.nih.gov/pubmed/22156199 |
| Engineering imaging probes and molecular machines for nanomedicine. | Tong S, Cradick TJ, Ma Y, Dai Z, Bao G | Science China. Life sciences | 23108862 | Sci China Life Sci | 2012 Oct | https://www.ncbi.nlm.nih.gov/pubmed/23108862 |
| Attenuation of PKCδ enhances metabolic activity and promotes expansion of blood progenitors. | Rao TN, Gupta MK, Softic S, Wang LD, Jang YC, Thomou T, Bezy O, Kulkarni RN, Kahn CR, Wagers AJ | The EMBO journal | 30446598 | EMBO J | 2018 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/30446598 |
| COSMID: A Web-based Tool for Identifying and Validating CRISPR/Cas Off-target Sites. | Cradick TJ, Qiu P, Lee CM, Fine EJ, Bao G | Molecular therapy. Nucleic acids | 25462530 | Mol Ther Nucleic Acids | 2014 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/25462530 |
| Off-Target V(D)J Recombination Drives Lymphomagenesis and Is Escalated by Loss of the Rag2 C Terminus. | Mijušković M, Chou YF, Gigi V, Lindsay CR, Shestova O, Lewis SM, Roth DB | Cell reports | 26365182 | Cell Rep | 2015 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/26365182 |
| Genome Editing: A New Approach to Human Therapeutics. | Porteus M | Annual review of pharmacology and toxicology | 26566154 | Annu Rev Pharmacol Toxicol | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26566154 |
| Simplified prototyping of perfusable polystyrene microfluidics. | Tran R, Ahn B, Myers DR, Qiu Y, Sakurai Y, Moot R, Mihevc E, Trent Spencer H, Doering C, A Lam W | Biomicrofluidics | 25379106 | Biomicrofluidics | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25379106 |
| Platelet mechanosensing of substrate stiffness during clot formation mediates adhesion, spreading, and activation. | Qiu Y, Brown AC, Myers DR, Sakurai Y, Mannino RG, Tran R, Ahn B, Hardy ET, Kee MF, Kumar S, Bao G, Barker TH, Lam WA | Proceedings of the National Academy of Sciences of the United States of America | 25246564 | Proc Natl Acad Sci U S A | 2014 Oct 7 | https://www.ncbi.nlm.nih.gov/pubmed/25246564 |
| Chromatin dynamics. | Hübner MR, Spector DL | Annual review of biophysics | 20462379 | Annu Rev Biophys | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/20462379 |
| An unexpected ending: noncanonical 3' end processing mechanisms. | Wilusz JE, Spector DL | RNA (New York, N.Y.) | 20007330 | RNA | 2010 Feb | https://www.ncbi.nlm.nih.gov/pubmed/20007330 |
| Bioimaging: second window for in vivo imaging. | Smith AM, Mancini MC, Nie S | Nature nanotechnology | 19898521 | Nat Nanotechnol | 2009 Nov | https://www.ncbi.nlm.nih.gov/pubmed/19898521 |
| The RAG2 C terminus suppresses genomic instability and lymphomagenesis. | Deriano L, Chaumeil J, Coussens M, Multani A, Chou Y, Alekseyenko AV, Chang S, Skok JA, Roth DB | Nature | 21368836 | Nature | 2011 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/21368836 |
| Gene correction by homologous recombination with zinc finger nucleases in primary cells from a mouse model of a generic recessive genetic disease. | Connelly JP, Barker JC, Pruett-Miller S, Porteus MH | Molecular therapy : the journal of the American Society of Gene Therapy | 20389291 | Mol Ther | 2010 Jun | https://www.ncbi.nlm.nih.gov/pubmed/20389291 |
| Pomalidomide augments fetal hemoglobin production without the myelosuppressive effects of hydroxyurea in transgenic sickle cell mice. | Meiler SE, Wade M, Kutlar F, Yerigenahally SD, Xue Y, Moutouh-de Parseval LA, Corral LG, Swerdlow PS, Kutlar A | Blood | 21536862 | Blood | 2011 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/21536862 |
| Nuclear neighborhoods and gene expression. | Zhao R, Bodnar MS, Spector DL | Current opinion in genetics & development | 19339170 | Curr Opin Genet Dev | 2009 Apr | https://www.ncbi.nlm.nih.gov/pubmed/19339170 |
| Modifying the function of DNA repair nanomachines for therapeutic benefit. | Dynan WS, Takeda Y, Li S | Nanomedicine : nanotechnology, biology, and medicine | 17292118 | Nanomedicine | 2006 Jun | https://www.ncbi.nlm.nih.gov/pubmed/17292118 |
| Porous-wall hollow glass microspheres as novel potential nanocarriers for biomedical applications. | Li S, Nguyen L, Xiong H, Wang M, Hu TC, She JX, Serkiz SM, Wicks GG, Dynan WS | Nanomedicine : nanotechnology, biology, and medicine | 19616128 | Nanomedicine | 2010 Feb | https://www.ncbi.nlm.nih.gov/pubmed/19616128 |
| Intranuclear delivery of a novel antibody-derived radiosensitizer targeting the DNA-dependent protein kinase catalytic subunit. | Xiong H, Lee RJ, Haura EB, Edwards JG, Dynan WS, Li S | International journal of radiation oncology, biology, physics | 22138455 | Int J Radiat Oncol Biol Phys | 2012 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/22138455 |
| Translating the lessons from gene therapy to the development of regenerative medicine. | Porteus M | Molecular therapy : the journal of the American Society of Gene Therapy | 21358706 | Mol Ther | 2011 Mar | https://www.ncbi.nlm.nih.gov/pubmed/21358706 |
| Role of H3K27 demethylases Jmjd3 and UTX in transcriptional regulation. | Hübner MR, Spector DL | Cold Spring Harbor symposia on quantitative biology | 21209387 | Cold Spring Harb Symp Quant Biol | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/21209387 |
| Quantum dot-fluorescent protein FRET probes for sensing intracellular pH. | Dennis AM, Rhee WJ, Sotto D, Dublin SN, Bao G | ACS nano | 22443420 | ACS Nano | 2012 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/22443420 |
| CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity. | Cradick TJ, Fine EJ, Antico CJ, Bao G | Nucleic acids research | 23939622 | Nucleic Acids Res | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23939622 |
| TALENs facilitate targeted genome editing in human cells with high specificity and low cytotoxicity. | Mussolino C, Alzubi J, Fine EJ, Morbitzer R, Cradick TJ, Lahaye T, Bao G, Cathomen T | Nucleic acids research | 24792154 | Nucleic Acids Res | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24792154 |
| CRISPR/Cas9 Genome Engineering in Engraftable Human Brain-Derived Neural Stem Cells. | Dever DP, Scharenberg SG, Camarena J, Kildebeck EJ, Clark JT, Martin RM, Bak RO, Tang Y, Dohse M, Birgmeier JA, Jagadeesh KA, Bejerano G, Tsukamoto A, Gomez-Ospina N, Uchida N, Porteus MH | iScience | 31132746 | iScience | 2019 May 31 | https://www.ncbi.nlm.nih.gov/pubmed/31132746 |
| Understanding and re-engineering nucleoprotein machines to cure human disease. | Dynan W, Takeda Y, Roth D, Bao G | Nanomedicine (London, England) | 18393669 | Nanomedicine (Lond) | 2008 Feb | https://www.ncbi.nlm.nih.gov/pubmed/18393669 |
| Homologous recombination-based gene therapy for the primary immunodeficiencies. | Porteus M | Annals of the New York Academy of Sciences | 22236437 | Ann N Y Acad Sci | 2011 Dec | https://www.ncbi.nlm.nih.gov/pubmed/22236437 |
| Imaging dynamic cellular events with quantum dots The bright future. | Smith AM, Wen MM, Nie S | The biochemist | 20824157 | Biochem (Lond) | 2010 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/20824157 |
| NANOSTRUCTURED PROBES FOR IN VIVO GENE DETECTION. | Bao G, Santangelo P, Nitin N, Rhee WJ | Nanomedicine : design and applications of magnetic nanomaterials, nanosensors, and nanosystems | 22138717 | Nanomedicine (Chichester) | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/22138717 |
| Designing and testing the activities of TAL effector nucleases. | Lin Y, Cradick TJ, Bao G | Methods in molecular biology (Clifton, N.J.) | 24557905 | Methods Mol Biol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24557905 |
| Identification of off-target cleavage sites of zinc finger nucleases and TAL effector nucleases using predictive models. | Fine EJ, Cradick TJ, Bao G | Methods in molecular biology (Clifton, N.J.) | 24557916 | Methods Mol Biol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24557916 |
| An online bioinformatics tool predicts zinc finger and TALE nuclease off-target cleavage. | Fine EJ, Cradick TJ, Zhao CL, Lin Y, Bao G | Nucleic acids research | 24381193 | Nucleic Acids Res | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24381193 |
| Physical Principles of Nanoparticle Cellular Endocytosis. | Zhang S, Gao H, Bao G | ACS nano | 26256227 | ACS Nano | 2015 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/26256227 |
| Genome Editing of the Blood: Opportunities and Challenges. | Porteus MH | Current stem cell reports | 26029496 | Curr Stem Cell Rep | 2015 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/26029496 |
| Delivery of siRNA to ovarian cancer cells using laser-activated carbon nanoparticles. | Sengupta A, Mezencev R, McDonald JF, Prausnitz MR | Nanomedicine (London, England) | 26080699 | Nanomedicine (Lond) | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26080699 |
| Somatic genome editing with CRISPR/Cas9 generates and corrects a metabolic disease. | Jarrett KE, Lee CM, Yeh YH, Hsu RH, Gupta R, Zhang M, Rodriguez PJ, Lee CS, Gillard BK, Bissig KD, Pownall HJ, Martin JF, Bao G, Lagor WR | Scientific reports | 28300165 | Sci Rep | 2017 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/28300165 |
| Design and Validation of CRISPR/Cas9 Systems for Targeted Gene Modification in Induced Pluripotent Stem Cells. | Lee CM, Zhu H, Davis TH, Deshmukh H, Bao G | Methods in molecular biology (Clifton, N.J.) | 27709565 | Methods Mol Biol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/27709565 |
| Protein Mechanics: A New Frontier in Biomechanics. | Bao G | Experimental mechanics | 19809588 | Exp Mech | 2009 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/19809588 |
| Surface ligand effects on metal-affinity coordination to quantum dots: implications for nanoprobe self-assembly. | Dennis AM, Sotto DC, Mei BC, Medintz IL, Mattoussi H, Bao G | Bioconjugate chemistry | 20568725 | Bioconjug Chem | 2010 Jul 21 | https://www.ncbi.nlm.nih.gov/pubmed/20568725 |
| Tat peptide is capable of importing large nanoparticles across nuclear membrane in digitonin permeabilized cells. | Nitin N, LaConte L, Rhee WJ, Bao G | Annals of biomedical engineering | 19657743 | Ann Biomed Eng | 2009 Oct | https://www.ncbi.nlm.nih.gov/pubmed/19657743 |
| Long noncoding RNAs: functional surprises from the RNA world. | Wilusz JE, Sunwoo H, Spector DL | Genes & development | 19571179 | Genes Dev | 2009 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/19571179 |
| Bright and compact alloyed quantum dots with broadly tunable near-infrared absorption and fluorescence spectra through mercury cation exchange. | Smith AM, Nie S | Journal of the American Chemical Society | 21142154 | J Am Chem Soc | 2011 Jan 12 | https://www.ncbi.nlm.nih.gov/pubmed/21142154 |
| Sequences in PSF/SFPQ mediate radioresistance and recruitment of PSF/SFPQ-containing complexes to DNA damage sites in human cells. | Ha K, Takeda Y, Dynan WS | DNA repair | 21144806 | DNA Repair (Amst) | 2011 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/21144806 |
| Nuclear speckles. | Spector DL, Lamond AI | Cold Spring Harbor perspectives in biology | 20926517 | Cold Spring Harb Perspect Biol | 2011 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/20926517 |
| Biogenesis and function of nuclear bodies. | Mao YS, Zhang B, Spector DL | Trends in genetics : TIG | 21680045 | Trends Genet | 2011 Aug | https://www.ncbi.nlm.nih.gov/pubmed/21680045 |
| Chromatin meets its organizers. | Bodnar MS, Spector DL | Cell | 23746835 | Cell | 2013 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/23746835 |
| Endothelialized microfluidics for studying microvascular interactions in hematologic diseases. | Myers DR, Sakurai Y, Tran R, Ahn B, Hardy ET, Mannino R, Kita A, Tsai M, Lam WA | Journal of visualized experiments : JoVE | 22760254 | J Vis Exp | 2012 Jun 22 | https://www.ncbi.nlm.nih.gov/pubmed/22760254 |
| The Role of DNA Mismatch Repair and Recombination in the Processing of DNA Alkylating Damage in Living Yeast Cells. | Flores-Rozas H, Jaafar L, Xia L | Advances in bioscience and biotechnology (Print) | 26900494 | Adv Biosci Biotechnol | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26900494 |
| The Neisseria meningitidis CRISPR-Cas9 System Enables Specific Genome Editing in Mammalian Cells. | Lee CM, Cradick TJ, Bao G | Molecular therapy : the journal of the American Society of Gene Therapy | 26782639 | Mol Ther | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26782639 |
| Treating hemoglobinopathies using gene-correction approaches: promises and challenges. | Cottle RN, Lee CM, Bao G | Human genetics | 27314256 | Hum Genet | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27314256 |
| Towards a new era in medicine: therapeutic genome editing. | Porteus MH | Genome biology | 26694713 | Genome Biol | 2015 Dec 22 | https://www.ncbi.nlm.nih.gov/pubmed/26694713 |
| Multiplexed genetic engineering of human hematopoietic stem and progenitor cells using CRISPR/Cas9 and AAV6. | Bak RO, Dever DP, Reinisch A, Cruz Hernandez D, Majeti R, Porteus MH | eLife | 28956530 | Elife | 2017 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/28956530 |
| Zinc-finger nuclease-mediated gene correction using single AAV vector transduction and enhancement by Food and Drug Administration-approved drugs. | Ellis BL, Hirsch ML, Porter SN, Samulski RJ, Porteus MH | Gene therapy | 22257934 | Gene Ther | 2013 Jan | https://www.ncbi.nlm.nih.gov/pubmed/22257934 |
| DNA targeting specificity of RNA-guided Cas9 nucleases. | Hsu PD, Scott DA, Weinstein JA, Ran FA, Konermann S, Agarwala V, Li Y, Fine EJ, Wu X, Shalem O, Cradick TJ, Marraffini LA, Bao G, Zhang F | Nature biotechnology | 23873081 | Nat Biotechnol | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/23873081 |
| Next-generation quantum dots. | Smith AM, Nie S | Nature biotechnology | 19668181 | Nat Biotechnol | 2009 Aug | https://www.ncbi.nlm.nih.gov/pubmed/19668181 |
| Use of a microscope stage-mounted Nickel-63 microirradiator for real-time observation of the DNA double-strand break response. | Cao Z, Kuhne WW, Steeb J, Merkley MA, Zhou Y, Janata J, Dynan WS | Nucleic acids research | 20484377 | Nucleic Acids Res | 2010 Aug | https://www.ncbi.nlm.nih.gov/pubmed/20484377 |
| Compact quantum dots for single-molecule imaging. | Smith AM, Nie S | Journal of visualized experiments : JoVE | 23093375 | J Vis Exp | 2012 Oct 9 | https://www.ncbi.nlm.nih.gov/pubmed/23093375 |
| E. coli expression of a soluble, active single-chain antibody variable fragment containing a nuclear localization signal. | Xiong H, Li S, Yang Z, Burgess RR, Dynan WS | Protein expression and purification | 19281848 | Protein Expr Purif | 2009 Aug | https://www.ncbi.nlm.nih.gov/pubmed/19281848 |
| Imaging and tracking of tat peptide-conjugated quantum dots in living cells: new insights into nanoparticle uptake, intracellular transport, and vesicle shedding. | Ruan G, Agrawal A, Marcus AI, Nie S | Journal of the American Chemical Society | 17983227 | J Am Chem Soc | 2007 Nov 28 | https://www.ncbi.nlm.nih.gov/pubmed/17983227 |
| NLS peptide conjugated molecular beacons for visualizing nuclear RNA in living cells. | Nitin N, Bao G | Bioconjugate chemistry | 18939859 | Bioconjug Chem | 2008 Nov 19 | https://www.ncbi.nlm.nih.gov/pubmed/18939859 |
| Yeast display evolution of a kinetically efficient 13-amino acid substrate for lipoic acid ligase. | Puthenveetil S, Liu DS, White KA, Thompson S, Ting AY | Journal of the American Chemical Society | 19863063 | J Am Chem Soc | 2009 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/19863063 |
| Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells. | Hendel A, Bak RO, Clark JT, Kennedy AB, Ryan DE, Roy S, Steinfeld I, Lunstad BD, Kaiser RJ, Wilkens AB, Bacchetta R, Tsalenko A, Dellinger D, Bruhn L, Porteus MH | Nature biotechnology | 26121415 | Nat Biotechnol | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/26121415 |
| Drug delivery: Puncturing cells en masse. | Prausnitz MR | Nature materials | 25899907 | Nat Mater | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25899907 |
| Controlled delivery of β-globin-targeting TALENs and CRISPR/Cas9 into mammalian cells for genome editing using microinjection. | Cottle RN, Lee CM, Archer D, Bao G | Scientific reports | 26558999 | Sci Rep | 2015 Nov 12 | https://www.ncbi.nlm.nih.gov/pubmed/26558999 |
| Codon swapping of zinc finger nucleases confers expression in primary cells and in vivo from a single lentiviral vector. | Abarrategui-Pontes C, Créneguy A, Thinard R, Fine EJ, Thepenier V, Fournier le RL, Cradick TJ, Bao G, Tesson L, Podevin G, Anegon I, Nguyen TH | Current gene therapy | 25687502 | Curr Gene Ther | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25687502 |
| A multifunctional AAV-CRISPR-Cas9 and its host response. | Chew WL, Tabebordbar M, Cheng JK, Mali P, Wu EY, Ng AH, Zhu K, Wagers AJ, Church GM | Nature methods | 27595405 | Nat Methods | 2016 Oct | https://www.ncbi.nlm.nih.gov/pubmed/27595405 |
| Nanomedicine: tiny particles and machines give huge gains. | Tong S, Fine EJ, Lin Y, Cradick TJ, Bao G | Annals of biomedical engineering | 24297494 | Ann Biomed Eng | 2014 Feb | https://www.ncbi.nlm.nih.gov/pubmed/24297494 |
| SAPTA: a new design tool for improving TALE nuclease activity. | Lin Y, Fine EJ, Zheng Z, Antico CJ, Voit RA, Porteus MH, Cradick TJ, Bao G | Nucleic acids research | 24442582 | Nucleic Acids Res | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24442582 |
| Poloxamer surfactant preserves cell viability during photoacoustic delivery of molecules into cells. | Sengupta A, Dwivedi N, Kelly SC, Tucci L, Thadhani NN, Prausnitz MR | Biotechnology and bioengineering | 25182778 | Biotechnol Bioeng | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25182778 |
| CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences. | Lin Y, Cradick TJ, Brown MT, Deshmukh H, Ranjan P, Sarode N, Wile BM, Vertino PM, Stewart FJ, Bao G | Nucleic acids research | 24838573 | Nucleic Acids Res | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24838573 |
| Frontiers in bioengineering research. | Bao G, Nerem RM | Annals of biomedical engineering | 24510229 | Ann Biomed Eng | 2014 Feb | https://www.ncbi.nlm.nih.gov/pubmed/24510229 |
| Expanding the substrate tolerance of biotin ligase through exploration of enzymes from diverse species. | Slavoff SA, Chen I, Choi YA, Ting AY | Journal of the American Chemical Society | 18171066 | J Am Chem Soc | 2008 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/18171066 |
| An unbiased method for detection of genome-wide off-target effects in cell lines treated with zinc finger nucleases. | Lindsay CR, Roth DB | Methods in molecular biology (Clifton, N.J.) | 24557915 | Methods Mol Biol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24557915 |
| CRISPR/Cas9 β-globin gene targeting in human haematopoietic stem cells. | Dever DP, Bak RO, Reinisch A, Camarena J, Washington G, Nicolas CE, Pavel-Dinu M, Saxena N, Wilkens AB, Mantri S, Uchida N, Hendel A, Narla A, Majeti R, Weinberg KI, Porteus MH | Nature | 27820943 | Nature | 2016 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/27820943 |
| Spatial control of in vivo CRISPR-Cas9 genome editing via nanomagnets. | Zhu H, Zhang L, Tong S, Lee CM, Deshmukh H, Bao G | Nature biomedical engineering | 30944431 | Nat Biomed Eng | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30944431 |
| Single-cell detection of mRNA expression using nanofountain-probe electroporated molecular beacons. | Giraldo-Vela JP, Kang W, McNaughton RL, Zhang X, Wile BM, Tsourkas A, Bao G, Espinosa HD | Small (Weinheim an der Bergstrasse, Germany) | 25641752 | Small | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25641752 |
| Quantifying on- and off-target genome editing. | Hendel A, Fine EJ, Bao G, Porteus MH | Trends in biotechnology | 25595557 | Trends Biotechnol | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25595557 |
| Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing. | Hendel A, Kildebeck EJ, Fine EJ, Clark J, Punjya N, Sebastiano V, Bao G, Porteus MH | Cell reports | 24685129 | Cell Rep | 2014 Apr 10 | https://www.ncbi.nlm.nih.gov/pubmed/24685129 |
| Nonrigid registration of 2-D and 3-D dynamic cell nuclei images for improved classification of subcellular particle motion. | Kim IH, Chen YC, Spector DL, Eils R, Rohr K | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 20840894 | IEEE Trans Image Process | 2011 Apr | https://www.ncbi.nlm.nih.gov/pubmed/20840894 |
| Chromatin dynamics and gene positioning. | Kumaran RI, Thakar R, Spector DL | Cell | 18358806 | Cell | 2008 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/18358806 |
| Self-complementary AAV mediates gene targeting and enhances endonuclease delivery for double-strand break repair. | Hirsch ML, Green L, Porteus MH, Samulski RJ | Gene therapy | 20463753 | Gene Ther | 2010 Sep | https://www.ncbi.nlm.nih.gov/pubmed/20463753 |
| Microenvironmental geometry guides platelet adhesion and spreading: a quantitative analysis at the single cell level. | Kita A, Sakurai Y, Myers DR, Rounsevell R, Huang JN, Seok TJ, Yu K, Wu MC, Fletcher DA, Lam WA | PloS one | 22028878 | PLoS One | 2011 | https://www.ncbi.nlm.nih.gov/pubmed/22028878 |
| A streamlined method for detecting structural variants in cancer genomes by short read paired-end sequencing. | Mijušković M, Brown SM, Tang Z, Lindsay CR, Efstathiadis E, Deriano L, Roth DB | PloS one | 23144753 | PLoS One | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/23144753 |
| Modernizing the nonhomologous end-joining repertoire: alternative and classical NHEJ share the stage. | Deriano L, Roth DB | Annual review of genetics | 24050180 | Annu Rev Genet | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24050180 |
| Multifunctional nanoparticles for drug delivery and molecular imaging. | Bao G, Mitragotri S, Tong S | Annual review of biomedical engineering | 23642243 | Annu Rev Biomed Eng | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23642243 |
| 53BP1 promotes non-homologous end joining of telomeres by increasing chromatin mobility. | Dimitrova N, Chen YC, Spector DL, de Lange T | Nature | 18931659 | Nature | 2008 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/18931659 |
| Regulating enzymatic activity with a photoswitchable affinity label. | Harvey JH, Trauner D | Chembiochem : a European journal of chemical biology | 18085544 | Chembiochem | 2008 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/18085544 |
| Lateral Inhibition in the Vertebrate Retina: The Case of the Missing Neurotransmitter. | Kramer RH, Davenport CM | PLoS biology | 26656622 | PLoS Biol | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26656622 |
| Optochemical control of genetically engineered neuronal nicotinic acetylcholine receptors. | Tochitsky I, Banghart MR, Mourot A, Yao JZ, Gaub B, Kramer RH, Trauner D | Nature chemistry | 22270644 | Nat Chem | 2012 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/22270644 |
| Rapid feedback regulation of synaptic efficacy during high-frequency activity at the Drosophila larval neuromuscular junction. | Kauwe G, Isacoff EY | Proceedings of the National Academy of Sciences of the United States of America | 23674684 | Proc Natl Acad Sci U S A | 2013 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/23674684 |
| Optogenetic techniques for the study of native potassium channels. | Sandoz G, Levitz J | Frontiers in molecular neuroscience | 23596388 | Front Mol Neurosci | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23596388 |
| Pseudomonas aeruginosa homoserine lactone triggers apoptosis and Bak/Bax-independent release of mitochondrial cytochrome C in fibroblasts. | Schwarzer C, Fu Z, Shuai S, Babbar S, Zhao G, Li C, Machen TE | Cellular microbiology | 24438098 | Cell Microbiol | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/24438098 |
| Adeno-associated virus vectors and neurological gene therapy. | Ojala DS, Amara DP, Schaffer DV | The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry | 24557878 | Neuroscientist | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/24557878 |
| Restoring visual function to blind mice with a photoswitch that exploits electrophysiological remodeling of retinal ganglion cells. | Tochitsky I, Polosukhina A, Degtyar VE, Gallerani N, Smith CM, Friedman A, Van Gelder RN, Trauner D, Kaufer D, Kramer RH | Neuron | 24559673 | Neuron | 2014 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/24559673 |
| Stoichiometry and specific assembly of Best ion channels. | Bharill S, Fu Z, Palty R, Isacoff EY | Proceedings of the National Academy of Sciences of the United States of America | 24748110 | Proc Natl Acad Sci U S A | 2014 Apr 29 | https://www.ncbi.nlm.nih.gov/pubmed/24748110 |
| High-contrast fluorescence imaging in fixed and living cells using optimized optical switches. | Wu L, Dai Y, Jiang X, Petchprayoon C, Lee JE, Jiang T, Yan Y, Marriott G | PloS one | 23755140 | PLoS One | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23755140 |
| Photoswitching of cell surface receptors using tethered ligands. | Reiner A, Isacoff EY | Methods in molecular biology (Clifton, N.J.) | 24718794 | Methods Mol Biol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24718794 |
| Optical lock-in detection imaging microscopy for contrast-enhanced imaging in living cells. | Marriott G, Mao S, Sakata T, Ran J, Jackson DK, Petchprayoon C, Gomez TJ, Warp E, Tulyathan O, Aaron HL, Isacoff EY, Yan Y | Proceedings of the National Academy of Sciences of the United States of America | 19004775 | Proc Natl Acad Sci U S A | 2008 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/19004775 |
| Optogenetic activation of LiGluR-expressing astrocytes evokes anion channel-mediated glutamate release. | Li D, Hérault K, Isacoff EY, Oheim M, Ropert N | The Journal of physiology | 22219341 | J Physiol | 2012 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/22219341 |
| Activation of specific interneurons improves V1 feature selectivity and visual perception. | Lee SH, Kwan AC, Zhang S, Phoumthipphavong V, Flannery JG, Masmanidis SC, Taniguchi H, Huang ZJ, Zhang F, Boyden ES, Deisseroth K, Dan Y | Nature | 22878719 | Nature | 2012 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/22878719 |
| Optical control of endogenous proteins with a photoswitchable conditional subunit reveals a role for TREK1 in GABA(B) signaling. | Sandoz G, Levitz J, Kramer RH, Isacoff EY | Neuron | 22726831 | Neuron | 2012 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/22726831 |
| Dual optical control and mechanistic insights into photoswitchable group II and III metabotropic glutamate receptors. | Levitz J, Broichhagen J, Leippe P, Konrad D, Trauner D, Isacoff EY | Proceedings of the National Academy of Sciences of the United States of America | 28396447 | Proc Natl Acad Sci U S A | 2017 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/28396447 |
| Restoration of high-sensitivity and adapting vision with a cone opsin. | Berry MH, Holt A, Salari A, Veit J, Visel M, Levitz J, Aghi K, Gaub BM, Sivyer B, Flannery JG, Isacoff EY | Nature communications | 30874546 | Nat Commun | 2019 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/30874546 |
| Controlling ionotropic and metabotropic glutamate receptors with light: principles and potential. | Reiner A, Levitz J, Isacoff EY | Current opinion in pharmacology | 25573450 | Curr Opin Pharmacol | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25573450 |
| Optopharmacological tools for restoring visual function in degenerative retinal diseases. | Tochitsky I, Kramer RH | Current opinion in neurobiology | 25706312 | Curr Opin Neurobiol | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25706312 |
| Pseudomonas aeruginosa Homoserine lactone activates store-operated cAMP and cystic fibrosis transmembrane regulator-dependent Cl- secretion by human airway epithelia. | Schwarzer C, Wong S, Shi J, Matthes E, Illek B, Ianowski JP, Arant RJ, Isacoff E, Vais H, Foskett JK, Maiellaro I, Hofer AM, Machen TE | The Journal of biological chemistry | 20739289 | J Biol Chem | 2010 Nov 5 | https://www.ncbi.nlm.nih.gov/pubmed/20739289 |
| Alternative splicing of neuroligin regulates the rate of presynaptic differentiation. | Lee H, Dean C, Isacoff E | The Journal of neuroscience : the official journal of the Society for Neuroscience | 20739565 | J Neurosci | 2010 Aug 25 | https://www.ncbi.nlm.nih.gov/pubmed/20739565 |
| Scanless two-photon excitation of channelrhodopsin-2. | Papagiakoumou E, Anselmi F, Bègue A, de Sars V, Glückstad J, Isacoff EY, Emiliani V | Nature methods | 20852649 | Nat Methods | 2010 Oct | https://www.ncbi.nlm.nih.gov/pubmed/20852649 |
| Omnidirectional 3D nanoplasmonic optical antenna array via soft-matter transformation. | Ross BM, Wu LY, Lee LP | Nano letters | 21661733 | Nano Lett | 2011 Jul 13 | https://www.ncbi.nlm.nih.gov/pubmed/21661733 |
| AAV mediated GDNF secretion from retinal glia slows down retinal degeneration in a rat model of retinitis pigmentosa. | Dalkara D, Kolstad KD, Guerin KI, Hoffmann NV, Visel M, Klimczak RR, Schaffer DV, Flannery JG | Molecular therapy : the journal of the American Society of Gene Therapy | 21522134 | Mol Ther | 2011 Sep | https://www.ncbi.nlm.nih.gov/pubmed/21522134 |
| Biologically functional cationic phospholipid-gold nanoplasmonic carriers of RNA. | Lee SE, Sasaki DY, Perroud TD, Yoo D, Patel KD, Lee LP | Journal of the American Chemical Society | 19746908 | J Am Chem Soc | 2009 Oct 7 | https://www.ncbi.nlm.nih.gov/pubmed/19746908 |
| N-(3-Oxo-acyl)-homoserine lactone induces apoptosis primarily through a mitochondrial pathway in fibroblasts. | Neely AM, Zhao G, Schwarzer C, Stivers NS, Whitt AG, Meng S, Burlison JA, Machen TE, Li C | Cellular microbiology | 28876505 | Cell Microbiol | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28876505 |
| Restoration of patterned vision with an engineered photoactivatable G protein-coupled receptor. | Berry MH, Holt A, Levitz J, Broichhagen J, Gaub BM, Visel M, Stanley C, Aghi K, Kim YJ, Cao K, Kramer RH, Trauner D, Flannery J, Isacoff EY | Nature communications | 29192252 | Nat Commun | 2017 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/29192252 |
| How Azobenzene Photoswitches Restore Visual Responses to the Blind Retina. | Tochitsky I, Helft Z, Meseguer V, Fletcher RB, Vessey KA, Telias M, Denlinger B, Malis J, Fletcher EL, Kramer RH | Neuron | 27667006 | Neuron | 2016 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/27667006 |
| Intravitreal injection of AAV2 transduces macaque inner retina. | Yin L, Greenberg K, Hunter JJ, Dalkara D, Kolstad KD, Masella BD, Wolfe R, Visel M, Stone D, Libby RT, Diloreto D Jr, Schaffer D, Flannery J, Williams DR, Merigan WH | Investigative ophthalmology & visual science | 21310920 | Invest Ophthalmol Vis Sci | 2011 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/21310920 |
| Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging. | Lecoq J, Savall J, Vučinić D, Grewe BF, Kim H, Li JZ, Kitch LJ, Schnitzer MJ | Nature neuroscience | 25402858 | Nat Neurosci | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/25402858 |
| Phospholipase D2 specifically regulates TREK potassium channels via direct interaction and local production of phosphatidic acid. | Comoglio Y, Levitz J, Kienzler MA, Lesage F, Isacoff EY, Sandoz G | Proceedings of the National Academy of Sciences of the United States of America | 25197053 | Proc Natl Acad Sci U S A | 2014 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/25197053 |
| Tuning photochromic ion channel blockers. | Mourot A, Kienzler MA, Banghart MR, Fehrentz T, Huber FM, Stein M, Kramer RH, Trauner D | ACS chemical neuroscience | 22860175 | ACS Chem Neurosci | 2011 Sep 21 | https://www.ncbi.nlm.nih.gov/pubmed/22860175 |
| Precise modulation of neuronal activity with synthetic photoswitchable ligands. | Kienzler MA, Isacoff EY | Current opinion in neurobiology | 28690101 | Curr Opin Neurobiol | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28690101 |
| Conformational pathway provides unique sensitivity to a synaptic mGluR. | Habrian CH, Levitz J, Vyklicky V, Fu Z, Hoagland A, McCort-Tranchepain I, Acher F, Isacoff EY | Nature communications | 31804469 | Nat Commun | 2019 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/31804469 |
| The mitochondrial Na(+)/Ca(2+) exchanger. | Palty R, Sekler I | Cell calcium | 22430014 | Cell Calcium | 2012 Jul | https://www.ncbi.nlm.nih.gov/pubmed/22430014 |
| Two-photon imaging of calcium in virally transfected striate cortical neurons of behaving monkey. | Heider B, Nathanson JL, Isacoff EY, Callaway EM, Siegel RM | PloS one | 21079806 | PLoS One | 2010 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/21079806 |
| Miniaturized integration of a fluorescence microscope. | Ghosh KK, Burns LD, Cocker ED, Nimmerjahn A, Ziv Y, Gamal AE, Schnitzer MJ | Nature methods | 21909102 | Nat Methods | 2011 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/21909102 |
| Tethered ligands reveal glutamate receptor desensitization depends on subunit occupancy. | Reiner A, Isacoff EY | Nature chemical biology | 24561661 | Nat Chem Biol | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24561661 |
| Thapsigargin blocks Pseudomonas aeruginosa homoserine lactone-induced apoptosis in airway epithelia. | Schwarzer C, Ravishankar B, Patanwala M, Shuai S, Fu Z, Illek B, Fischer H, Machen TE | American journal of physiology. Cell physiology | 24598360 | Am J Physiol Cell Physiol | 2014 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/24598360 |
| Focal damage to macaque photoreceptors produces persistent visual loss. | Strazzeri JM, Hunter JJ, Masella BD, Yin L, Fischer WS, DiLoreto DA Jr, Libby RT, Williams DR, Merigan WH | Experimental eye research | 24316158 | Exp Eye Res | 2014 Feb | https://www.ncbi.nlm.nih.gov/pubmed/24316158 |
| Rapid optical control of nociception with an ion-channel photoswitch. | Mourot A, Fehrentz T, Le Feuvre Y, Smith CM, Herold C, Dalkara D, Nagy F, Trauner D, Kramer RH | Nature methods | 22343342 | Nat Methods | 2012 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/22343342 |
| Conformational dynamics of a class C G-protein-coupled receptor. | Vafabakhsh R, Levitz J, Isacoff EY | Nature | 26258295 | Nature | 2015 Aug 27 | https://www.ncbi.nlm.nih.gov/pubmed/26258295 |
| Sequential Steps of CRAC Channel Activation. | Palty R, Fu Z, Isacoff EY | Cell reports | 28564609 | Cell Rep | 2017 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/28564609 |
| Restoring visual function to the blind retina with a potent, safe and long-lasting photoswitch. | Tochitsky I, Trautman J, Gallerani N, Malis JG, Kramer RH | Scientific reports | 28406473 | Sci Rep | 2017 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/28406473 |
| The expression pattern of systemically injected AAV9 in the developing mouse retina is determined by age. | Byrne LC, Lin YJ, Lee T, Schaffer DV, Flannery JG | Molecular therapy : the journal of the American Society of Gene Therapy | 25224467 | Mol Ther | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25224467 |
| Optical control of sphingosine-1-phosphate formation and function. | Morstein J, Hill RZ, Novak AJE, Feng S, Norman DD, Donthamsetti PC, Frank JA, Harayama T, Williams BM, Parrill AL, Tigyi GJ, Riezman H, Isacoff EY, Bautista DM, Trauner D | Nature chemical biology | 31036923 | Nat Chem Biol | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31036923 |
| Genetically Targeted Optical Control of an Endogenous G Protein-Coupled Receptor. | Donthamsetti PC, Broichhagen J, Vyklicky V, Stanley C, Fu Z, Visel M, Levitz JL, Javitch JA, Trauner D, Isacoff EY | Journal of the American Chemical Society | 31291105 | J Am Chem Soc | 2019 Jul 24 | https://www.ncbi.nlm.nih.gov/pubmed/31291105 |
| Genetic and optical targeting of neural circuits and behavior--zebrafish in the spotlight. | Baier H, Scott EK | Current opinion in neurobiology | 19781935 | Curr Opin Neurobiol | 2009 Oct | https://www.ncbi.nlm.nih.gov/pubmed/19781935 |
| In vivo brain imaging using a portable 2.9 g two-photon microscope based on a microelectromechanical systems scanning mirror. | Piyawattanametha W, Cocker ED, Burns LD, Barretto RP, Jung JC, Ra H, Solgaard O, Schnitzer MJ | Optics letters | 19649080 | Opt Lett | 2009 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/19649080 |
| Inner limiting membrane barriers to AAV-mediated retinal transduction from the vitreous. | Dalkara D, Kolstad KD, Caporale N, Visel M, Klimczak RR, Schaffer DV, Flannery JG | Molecular therapy : the journal of the American Society of Gene Therapy | 19672248 | Mol Ther | 2009 Dec | https://www.ncbi.nlm.nih.gov/pubmed/19672248 |
| A novel adeno-associated viral variant for efficient and selective intravitreal transduction of rat Müller cells. | Klimczak RR, Koerber JT, Dalkara D, Flannery JG, Schaffer DV | PloS one | 19826483 | PLoS One | 2009 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/19826483 |
| Grueneberg ganglion olfactory subsystem employs a cGMP signaling pathway. | Liu CY, Fraser SE, Koos DS | The Journal of comparative neurology | 19565523 | J Comp Neurol | 2009 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/19565523 |
| Photochemical Restoration of Light Sensitivity in the Degenerated Canine Retina. | Nikonov S, Dolgova N, Sudharsan R, Tochitsky I, Iwabe S, Guzman JM, Van Gelder RN, Kramer RH, Aguirre GD, Beltran WA | Pharmaceutics | 36559205 | Pharmaceutics | 2022 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/36559205 |
| Optical control of metabotropic glutamate receptors. | Levitz J, Pantoja C, Gaub B, Janovjak H, Reiner A, Hoagland A, Schoppik D, Kane B, Stawski P, Schier AF, Trauner D, Isacoff EY | Nature neuroscience | 23455609 | Nat Neurosci | 2013 Apr | https://www.ncbi.nlm.nih.gov/pubmed/23455609 |
| Different mechanisms regulate productive herpes simplex virus 1 (HSV-1) and HSV-2 infections in adult trigeminal neurons. | Bertke AS, Ma A, Margolis MS, Margolis TP | Journal of virology | 23514893 | J Virol | 2013 Jun | https://www.ncbi.nlm.nih.gov/pubmed/23514893 |
| Photonic gene circuits by optically addressable siRNA-Au nanoantennas. | Lee SE, Sasaki DY, Park Y, Xu R, Brennan JS, Bissell MJ, Lee LP | ACS nano | 22827439 | ACS Nano | 2012 Sep 25 | https://www.ncbi.nlm.nih.gov/pubmed/22827439 |
| Imaging light responses of retinal ganglion cells in the living mouse eye. | Yin L, Geng Y, Osakada F, Sharma R, Cetin AH, Callaway EM, Williams DR, Merigan WH | Journal of neurophysiology | 23407356 | J Neurophysiol | 2013 May | https://www.ncbi.nlm.nih.gov/pubmed/23407356 |
| AMPA receptor/TARP stoichiometry visualized by single-molecule subunit counting. | Hastie P, Ulbrich MH, Wang HL, Arant RJ, Lau AG, Zhang Z, Isacoff EY, Chen L | Proceedings of the National Academy of Sciences of the United States of America | 23479622 | Proc Natl Acad Sci U S A | 2013 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/23479622 |
| A Comprehensive Optogenetic Pharmacology Toolkit for In Vivo Control of GABA(A) Receptors and Synaptic Inhibition. | Lin WC, Tsai MC, Davenport CM, Smith CM, Veit J, Wilson NM, Adesnik H, Kramer RH | Neuron | 26606997 | Neuron | 2015 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/26606997 |
| A spinal opsin controls early neural activity and drives a behavioral light response. | Friedmann D, Hoagland A, Berlin S, Isacoff EY | Current biology : CB | 25484291 | Curr Biol | 2015 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/25484291 |
| Copper regulates rest-activity cycles through the locus coeruleus-norepinephrine system. | Xiao T, Ackerman CM, Carroll EC, Jia S, Hoagland A, Chan J, Thai B, Liu CS, Isacoff EY, Chang CJ | Nature chemical biology | 29867144 | Nat Chem Biol | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29867144 |
| Plasmon resonance energy transfer (PRET)-based molecular imaging of cytochrome c in living cells. | Choi Y, Kang T, Lee LP | Nano letters | 19093833 | Nano Lett | 2009 Jan | https://www.ncbi.nlm.nih.gov/pubmed/19093833 |
| Remote optical switch for localized and selective control of gene interference. | Lee SE, Liu GL, Kim F, Lee LP | Nano letters | 19128006 | Nano Lett | 2009 Feb | https://www.ncbi.nlm.nih.gov/pubmed/19128006 |
| Biomolecular plasmonics for quantitative biology and nanomedicine. | Lee SE, Lee LP | Current opinion in biotechnology | 20801636 | Curr Opin Biotechnol | 2010 Aug | https://www.ncbi.nlm.nih.gov/pubmed/20801636 |
| Nanoplasmonic gene regulation. | Lee SE, Lee LP | Current opinion in chemical biology | 20888286 | Curr Opin Chem Biol | 2010 Oct | https://www.ncbi.nlm.nih.gov/pubmed/20888286 |
| Optical quantal analysis of synaptic transmission in wild-type and rab3-mutant Drosophila motor axons. | Peled ES, Isacoff EY | Nature neuroscience | 21378971 | Nat Neurosci | 2011 Apr | https://www.ncbi.nlm.nih.gov/pubmed/21378971 |
| A modern ionotropic glutamate receptor with a K(+) selectivity signature sequence. | Janovjak H, Sandoz G, Isacoff EY | Nature communications | 21407198 | Nat Commun | 2011 | https://www.ncbi.nlm.nih.gov/pubmed/21407198 |
| Optical control of calcium affinity in a spiroamido-rhodamine based calcium chelator. | Wu L, Dai Y, Marriott G | Organic letters | 21417245 | Org Lett | 2011 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/21417245 |
| Rational design, synthesis, and characterization of highly fluorescent optical switches for high-contrast optical lock-in detection (OLID) imaging microscopy in living cells. | Petchprayoon C, Yan Y, Mao S, Marriott G | Bioorganic & medicinal chemistry | 20674372 | Bioorg Med Chem | 2011 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/20674372 |
| Disassembly of a core-satellite nanoassembled substrate for colorimetric biomolecular detection. | Waldeisen JR, Wang T, Ross BM, Lee LP | ACS nano | 21667984 | ACS Nano | 2011 Jul 26 | https://www.ncbi.nlm.nih.gov/pubmed/21667984 |
| Enhanced gene delivery to the neonatal retina through systemic administration of tyrosine-mutated AAV9. | Dalkara D, Byrne LC, Lee T, Hoffmann NV, Schaffer DV, Flannery JG | Gene therapy | 22011645 | Gene Ther | 2012 Feb | https://www.ncbi.nlm.nih.gov/pubmed/22011645 |
| The Brain Prize 2013: the optogenetics revolution. | Reiner A, Isacoff EY | Trends in neurosciences | 24054067 | Trends Neurosci | 2013 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24054067 |
| In vivo-directed evolution of a new adeno-associated virus for therapeutic outer retinal gene delivery from the vitreous. | Dalkara D, Byrne LC, Klimczak RR, Visel M, Yin L, Merigan WH, Flannery JG, Schaffer DV | Science translational medicine | 23761039 | Sci Transl Med | 2013 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/23761039 |
| Photochromic blockers of voltage-gated potassium channels. | Banghart MR, Mourot A, Fortin DL, Yao JZ, Kramer RH, Trauner D | Angewandte Chemie (International ed. in English) | 19882609 | Angew Chem Int Ed Engl | 2009 | https://www.ncbi.nlm.nih.gov/pubmed/19882609 |
| Optical control of neuronal activity. | Szobota S, Isacoff EY | Annual review of biophysics | 20192766 | Annu Rev Biophys | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/20192766 |
| Bioinspired nanocorals with decoupled cellular targeting and sensing functionality. | Wu LY, Ross BM, Hong S, Lee LP | Small (Weinheim an der Bergstrasse, Germany) | 20108232 | Small | 2010 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/20108232 |
| Photochemical restoration of visual responses in blind mice. | Polosukhina A, Litt J, Tochitsky I, Nemargut J, Sychev Y, De Kouchkovsky I, Huang T, Borges K, Trauner D, Van Gelder RN, Kramer RH | Neuron | 22841312 | Neuron | 2012 Jul 26 | https://www.ncbi.nlm.nih.gov/pubmed/22841312 |
| Pseudomonas aeruginosa Inhibition of Flagellin-activated NF-kappaB and interleukin-8 by human airway epithelial cells. | Pena J, Fu Z, Schwarzer C, Machen TE | Infection and immunity | 19451246 | Infect Immun | 2009 Jul | https://www.ncbi.nlm.nih.gov/pubmed/19451246 |
| Site-specific chemical modification of recombinant proteins produced in mammalian cells by using the genetically encoded aldehyde tag. | Wu P, Shui W, Carlson BL, Hu N, Rabuka D, Lee J, Bertozzi CR | Proceedings of the National Academy of Sciences of the United States of America | 19202059 | Proc Natl Acad Sci U S A | 2009 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/19202059 |
| New aldehyde tag sequences identified by screening formylglycine generating enzymes in vitro and in vivo. | Rush JS, Bertozzi CR | Journal of the American Chemical Society | 18722427 | J Am Chem Soc | 2008 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/18722427 |
| Nanoengineering ion channels for optical control. | Gorostiza P, Isacoff EY | Physiology (Bethesda, Md.) | 18927200 | Physiology (Bethesda) | 2008 Oct | https://www.ncbi.nlm.nih.gov/pubmed/18927200 |
| Optical switches for remote and noninvasive control of cell signaling. | Gorostiza P, Isacoff EY | Science (New York, N.Y.) | 18927384 | Science | 2008 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/18927384 |
| Optogenetic Vision Restoration Using Rhodopsin for Enhanced Sensitivity. | Gaub BM, Berry MH, Holt AE, Isacoff EY, Flannery JG | Molecular therapy : the journal of the American Society of Gene Therapy | 26137852 | Mol Ther | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/26137852 |
| Retinoschisin gene therapy in photoreceptors, Müller glia or all retinal cells in the Rs1h-/- mouse. | Byrne LC, Oztürk BE, Lee T, Fortuny C, Visel M, Dalkara D, Schaffer DV, Flannery JG | Gene therapy | 24694538 | Gene Ther | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24694538 |
| Engineering a light-regulated GABAA receptor for optical control of neural inhibition. | Lin WC, Davenport CM, Mourot A, Vytla D, Smith CM, Medeiros KA, Chambers JJ, Kramer RH | ACS chemical biology | 24819442 | ACS Chem Biol | 2014 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/24819442 |
| AAV ancestral reconstruction library enables selection of broadly infectious viral variants. | Santiago-Ortiz J, Ojala DS, Westesson O, Weinstein JR, Wong SY, Steinsapir A, Kumar S, Holmes I, Schaffer DV | Gene therapy | 26186661 | Gene Ther | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26186661 |
| Exclusion of the unfolded protein response in light-induced retinal degeneration in the canine T4R RHO model of autosomal dominant retinitis pigmentosa. | Marsili S, Genini S, Sudharsan R, Gingrich J, Aguirre GD, Beltran WA | PloS one | 25695253 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25695253 |
| Orthogonal Optical Control of a G Protein-Coupled Receptor with a SNAP-Tethered Photochromic Ligand. | Broichhagen J, Damijonaitis A, Levitz J, Sokol KR, Leippe P, Konrad D, Isacoff EY, Trauner D | ACS central science | 27162996 | ACS Cent Sci | 2015 Oct 28 | https://www.ncbi.nlm.nih.gov/pubmed/27162996 |
| N-(3-oxo-acyl) homoserine lactone inhibits tumor growth independent of Bcl-2 proteins. | Zhao G, Neely AM, Schwarzer C, Lu H, Whitt AG, Stivers NS, Burlison JA, White C, Machen TE, Li C | Oncotarget | 26758417 | Oncotarget | 2016 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/26758417 |
| Mechanism of Assembly and Cooperativity of Homomeric and Heteromeric Metabotropic Glutamate Receptors. | Levitz J, Habrian C, Bharill S, Fu Z, Vafabakhsh R, Isacoff EY | Neuron | 27641494 | Neuron | 2016 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/27641494 |
| Viral-mediated RdCVF and RdCVFL expression protects cone and rod photoreceptors in retinal degeneration. | Byrne LC, Dalkara D, Luna G, Fisher SK, Clérin E, Sahel JA, Léveillard T, Flannery JG | The Journal of clinical investigation | 25415434 | J Clin Invest | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/25415434 |
| Neuromodulatory Regulation of Behavioral Individuality in Zebrafish. | Pantoja C, Hoagland A, Carroll EC, Karalis V, Conner A, Isacoff EY | Neuron | 27397519 | Neuron | 2016 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/27397519 |
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| Overlap of abnormal photoreceptor development and progressive degeneration in Leber congenital amaurosis caused by NPHP5 mutation. | Downs LM, Scott EM, Cideciyan AV, Iwabe S, Dufour V, Gardiner KL, Genini S, Marinho LF, Sumaroka A, Kosyk MS, Swider M, Aguirre GK, Jacobson SG, Beltran WA, Aguirre GD | Human molecular genetics | 27506978 | Hum Mol Genet | 2016 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/27506978 |
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| Two-photon brightness of azobenzene photoswitches designed for glutamate receptor optogenetics. | Carroll EC, Berlin S, Levitz J, Kienzler MA, Yuan Z, Madsen D, Larsen DS, Isacoff EY | Proceedings of the National Academy of Sciences of the United States of America | 25653339 | Proc Natl Acad Sci U S A | 2015 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/25653339 |
| Restoration of visual function by expression of a light-gated mammalian ion channel in retinal ganglion cells or ON-bipolar cells. | Gaub BM, Berry MH, Holt AE, Reiner A, Kienzler MA, Dolgova N, Nikonov S, Aguirre GD, Beltran WA, Flannery JG, Isacoff EY | Proceedings of the National Academy of Sciences of the United States of America | 25489083 | Proc Natl Acad Sci U S A | 2014 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/25489083 |
| Experience, circuit dynamics, and forebrain recruitment in larval zebrafish prey capture. | Oldfield CS, Grossrubatscher I, Chávez M, Hoagland A, Huth AR, Carroll EC, Prendergast A, Qu T, Gallant JL, Wyart C, Isacoff EY | eLife | 32985972 | Elife | 2020 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/32985972 |
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| Emergence of patterned activity in the developing zebrafish spinal cord. | Warp E, Agarwal G, Wyart C, Friedmann D, Oldfield CS, Conner A, Del Bene F, Arrenberg AB, Baier H, Isacoff EY | Current biology : CB | 22197243 | Curr Biol | 2012 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/22197243 |
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| A light-gated, potassium-selective glutamate receptor for the optical inhibition of neuronal firing. | Janovjak H, Szobota S, Wyart C, Trauner D, Isacoff EY | Nature neuroscience | 20581843 | Nat Neurosci | 2010 Aug | https://www.ncbi.nlm.nih.gov/pubmed/20581843 |
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| Reversible switching of pRNA activity on the DNA packaging motor of bacteriophage phi29. | Ko SH, Chen Y, Shu D, Guo P, Mao C | Journal of the American Chemical Society | 19049308 | J Am Chem Soc | 2008 Dec 31 | https://www.ncbi.nlm.nih.gov/pubmed/19049308 |
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| Crystallization and preliminary X-ray diffraction analysis of recombinant hepatitis E virus-like particle. | Wang CY, Miyazaki N, Yamashita T, Higashiura A, Nakagawa A, Li TC, Takeda N, Xing L, Hjalmarsson E, Friberg C, Liou DM, Sung YJ, Tsukihara T, Matsuura Y, Miyamura T, Cheng RH | Acta crystallographica. Section F, Structural biology and crystallization communications | 18391436 | Acta Crystallogr Sect F Struct Biol Cryst Commun | 2008 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/18391436 |
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| Application of phi29 motor pRNA for targeted therapeutic delivery of siRNA silencing metallothionein-IIA and survivin in ovarian cancers. | Tarapore P, Shu Y, Guo P, Ho SM | Molecular therapy : the journal of the American Society of Gene Therapy | 21063391 | Mol Ther | 2011 Feb | https://www.ncbi.nlm.nih.gov/pubmed/21063391 |
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| Effective electrophoretic mobilities and charges of anti-VEGF proteins determined by capillary zone electrophoresis. | Li SK, Liddell MR, Wen H | Journal of pharmaceutical and biomedical analysis | 21269789 | J Pharm Biomed Anal | 2011 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/21269789 |
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| Phase separation in binary mixtures of bipolar and monopolar lipid dispersions revealed by 2H NMR spectroscopy, small angle x-ray scattering, and molecular theory. | Brownholland DP, Longo GS, Struts AV, Justice MJ, Szleifer I, Petrache HI, Brown MF, Thompson DH | Biophysical journal | 19917223 | Biophys J | 2009 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/19917223 |
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| Closed-loop control of cellular functions using combinatory drugs guided by a stochastic search algorithm. | Wong PK, Yu F, Shahangian A, Cheng G, Sun R, Ho CM | Proceedings of the National Academy of Sciences of the United States of America | 18356295 | Proc Natl Acad Sci U S A | 2008 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/18356295 |
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| Placement of alkanethiol-capped Au nanoparticles using organic solvents. | Yim TJ, Choi H, Zhang X | Journal of colloid and interface science | 20332051 | J Colloid Interface Sci | 2010 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/20332051 |
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