| A second space age spanning omics, platforms and medicine across orbits. |
Mason CE, Green J, Adamopoulos KI, Afshin EE, Baechle JJ, Basner M, Bailey SM, Bielski L, Borg J, Borg J, Broddrick JT, Burke M, Caicedo A, Castañeda V, Chatterjee S, Chin CR, Church G, Costes SV, De Vlaminck I, Desai RI, Dhir R, Diaz JE, Etlin SM, Feinstein Z, Furman D, Garcia-Medina JS, Garrett-Bakelman F, Giacomello S, Gupta A, Hassanin A, Houerbi N, Irby I, Javorsky E, Jirak P, Jones CW, Kamal KY, Kangas BD, Karouia F, Kim J, Kim JH, Kleinman AS, Lam T, Lawler JM, Lee JA, Limoli CL, Lucaci A, MacKay M, McDonald JT, Melnick AM, Meydan C, Mieczkowski J, Muratani M, Najjar D, Othman MA, Overbey EG, Paar V, Park J, Paul AM, Perdyan A, Proszynski J, Reynolds RJ, Ronca AE, Rubins K, Ryon KA, Sanders LM, Glowe PS, Shevde Y, Schmidt MA, Scott RT, Shirah B, Sienkiewicz K, Sierra MA, Siew K, Theriot CA, Tierney BT, Venkateswaran K, Hirschberg JW, Walsh SB, Walter C, Winer DA, Yu M, Zea L, Mateus J, Beheshti A |
Nature |
38862027 |
Nature |
2024 Aug |
https://www.ncbi.nlm.nih.gov/pubmed/38862027 |
| A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material. |
Daniels CA, Abdulkadir A, Cleveland MH, McDaniel JH, Jáspez D, Rubio-Rodríguez LA, Muñoz-Barrera A, Lorenzo-Salazar JM, Flores C, Yoo B, Sahraeian SME, Wang Y, Rossi M, Visvanath A, Murray L, Chen WT, Catreux S, Han J, Mehio R, Parnaby G, Carroll A, Chang PC, Shafin K, Cook D, Kolesnikov A, Brambrink L, Mootor MFE, Patel Y, Yamaguchi TN, Boutros PC, Sienkiewicz K, Foox J, Mason CE, Lajoie BR, Ruiz-Perez CA, Kruglyak S, Zook JM, Olson ND |
bioRxiv : the preprint server for biology |
39677813 |
bioRxiv |
2024 Dec 5 |
https://www.ncbi.nlm.nih.gov/pubmed/39677813 |
| Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair. |
McDaniel JH, Patel V, Olson ND, He HJ, He Z, Cole KD, Gooden AA, Schmitt A, Sikkink K, Sedlazeck FJ, Doddapaneni H, Jhangiani SN, Muzny DM, Gingras MC, Mehta H, Behera S, Paulin LF, Hastie AR, Yu HC, Weigman V, Rojas A, Kennedy K, Remington J, Salas-González I, Sudkamp M, Wiseman K, Lajoie BR, Levy S, Jain M, Akeson S, Narzisi G, Steinsnyder Z, Reeves C, Shelton J, Kingan SB, Lambert C, Baybayan P, Wenger AM, McLaughlin IJ, Adamson A, Kingsley C, Wescott M, Kim Y, Paten B, Park J, Violich I, Miga KH, Gardner J, McNulty B, Rosen GL, McCoy R, Brundu F, Sayyari E, Scheffler K, Truong S, Catreux S, Hannah LC, Lipson D, Benjamin H, Iremadze N, Soifer I, Krieger G, Eacker S, Wood M, Cross E, Husar G, Gross S, Vernich M, Kolmogorov M, Ahmad T, Keskus AG, Bryant A, Thibaud-Nissen F, Trow J, Proszynski J, Hirschberg JW, Ryon K, Mason CE, Bhakta MS, Sanborn JZ, Munding EM, Wagner J, Xiao C, Liss AS, Zook JM |
Scientific data |
40670386 |
Sci Data |
2025 Jul 16 |
https://www.ncbi.nlm.nih.gov/pubmed/40670386 |
| Molecular and physiological changes in the SpaceX Inspiration4 civilian crew. |
Jones CW, Overbey EG, Lacombe J, Ecker AJ, Meydan C, Ryon K, Tierney B, Damle N, MacKay M, Afshin EE, Foox J, Park J, Nelson TM, Suhail Mohamad M, Byhaqui SGA, Aslam B, Tali UA, Nisa L, Menon PV, Patel CO, Khan SA, Ebert DJ, Everson A, Schubert MC, Ali NN, Sarma MS, Kim J, Houerbi N, Grigorev K, Garcia Medina JS, Summers AJ, Gu J, Altin JA, Fattahi A, Hirzallah MI, Wu JH, Stahn AC, Beheshti A, Klotz R, Ortiz V, Yu M, Patras L, Matei I, Lyden D, Melnick A, Banerjee N, Mullane S, Kleinman AS, Loesche M, Menon AS, Donoviel DB, Urquieta E, Mateus J, Sargsyan AE, Shelhamer M, Zenhausern F, Bershad EM, Basner M, Mason CE |
Nature |
38862026 |
Nature |
2024 Aug |
https://www.ncbi.nlm.nih.gov/pubmed/38862026 |
| Interplay of genetic predisposition, plasma metabolome and Mediterranean diet in dementia risk and cognitive function. |
Liu Y, Gu X, Li Y, Wang F, Vyas CM, Peng C, Dong D, Li Y, Zhang Y, Zhang Y, Zeleznik OA, Kang JH, Wang M, Hu FB, Willett WC, Okereke OI, Eliassen AH, Kraft P, Stampfer MJ, Wang DD |
Nature medicine |
40855194 |
Nat Med |
2025 Aug 25 |
https://www.ncbi.nlm.nih.gov/pubmed/40855194 |
| Viral Load Measurements for Kaposi Sarcoma Herpesvirus (KSHV/HHV8): Review and an Updated Assay. |
Cano P, Seltzer T, Seltzer J, Peng A, Landis J, Pluta L, Dittmer DP |
Journal of medical virology |
39648698 |
J Med Virol |
2024 Dec |
https://www.ncbi.nlm.nih.gov/pubmed/39648698 |
| Genome evolution of Kaposi sarcoma-associated herpesvirus (KSHV). |
Moorad R, Peng A, Landis J, Pluta LJ, Cano P, Juarez A, Dittmer DP |
Journal of virology |
40237497 |
J Virol |
2025 May 20 |
https://www.ncbi.nlm.nih.gov/pubmed/40237497 |
| Dynamics of Bacterial and Viral Transmission in Experimental Microbiota Transplantation. |
Weagley JS, Cárdenas LAC, Romani A, Sullender ME, Aggarwal S, Makimaa H, Hogarty MP, Rodgers R, Kennedy EA, Foster L, Schriefer LA, Baldridge MT |
bioRxiv : the preprint server for biology |
39868290 |
bioRxiv |
2025 May 7 |
https://www.ncbi.nlm.nih.gov/pubmed/39868290 |
| Single cell viral tagging of Faecalibacterium prausnitzii reveals rare bacteriophages omitted by other techniques. |
Campbell DE, Wu X, Hall LR, Lawrence D, Molleston JM, Schriefer LA, Droit L, Weagley JS, Olson BS, Rimmer J, Parkes M, Handley SA, Baldridge MT |
Gut microbes |
40754853 |
Gut Microbes |
2025 Dec |
https://www.ncbi.nlm.nih.gov/pubmed/40754853 |
| Clec12a controls colitis by tempering inflammation and restricting expansion of specific commensals. |
Chiaro TR, Greenewood M, Bauer KM, Ost KS, Stephen-Victor E, Murphy M, Weis AM, Nelson MC, Hill JH, Bell R, Voth W, Jackson T, Klag KA, O'Connell RM, Zac Stephens W, Round JL |
Cell host & microbe |
39788099 |
Cell Host Microbe |
2025 Jan 8 |
https://www.ncbi.nlm.nih.gov/pubmed/39788099 |
| Cell type-specific purifying selection of synonymous mitochondrial DNA variation. |
Lareau CA, Maschmeyer P, Yin Y, Gutierrez JC, Dhindsa RS, Gribling-Burrer AS, Zielinski S, Hsieh YH, Nitsch L, Dimitrova V, Nalbant B, Buquicchio FA, Abay T, Stickels RR, Ulirsch JC, Yan P, Wang F, Miao Z, Sandor K, Daniel B, Liu V, Mendez PL, Knaus P, Meyer M, Greenleaf WJ, Kundaje A, Smyth RP, Munschauer M, Ludwig LS, Satpathy AT |
Proceedings of the National Academy of Sciences of the United States of America |
40705423 |
Proc Natl Acad Sci U S A |
2025 Jul 29 |
https://www.ncbi.nlm.nih.gov/pubmed/40705423 |
| Clonal lineage tracing of innate immune cells in human cancer. |
Liu V, Sandor K, Yan PK, Miao M, Yin Y, Stickels RR, Chen AY, Hiam-Galvez K, Gutierrez J, Zhang W, Sajjath SM, Valbuena R, Wang S, Dániel B, Ludwig LS, Howitt BE, Lareau C, Satpathy AT |
bioRxiv : the preprint server for biology |
40777278 |
bioRxiv |
2025 Jul 21 |
https://www.ncbi.nlm.nih.gov/pubmed/40777278 |
| CAR-engineered lymphocyte persistence is governed by a FAS ligand-FAS autoregulatory circuit. |
Yi F, Cohen T, Zimmerman N, Dündar F, Zumbo P, Eltilib R, Brophy EJ, Arkin H, Feucht J, Gormally MV, Hackett CS, Kropp KN, Etxeberria I, Chandran SS, Zhao Z, Cai W, Daniyan AF, Park JH, Lareau CA, Hsu KC, Sadelain M, Betel D, Klebanoff CA |
Nature cancer |
40696154 |
Nat Cancer |
2025 Jul 22 |
https://www.ncbi.nlm.nih.gov/pubmed/40696154 |
| Transcript-specific enrichment enables profiling of rare cell states via single-cell RNA sequencing. |
Abay T, Stickels RR, Takizawa MT, Nalbant BN, Hsieh YH, Hwang S, Snopkowski C, Yu KKH, Abou-Mrad Z, Tabar V, Howitt BE, Ludwig LS, Chaligné R, Satpathy AT, Lareau CA |
Nature genetics |
39779958 |
Nat Genet |
2025 Feb |
https://www.ncbi.nlm.nih.gov/pubmed/39779958 |
