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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Authors Journal PubMedID Publication Date
Deep learning to predict rapid progression of Alzheimer's disease from pooled clinical trials: A retrospective study. Ma, Xiaotian; Shyer, Madison; Harris, Kristofer; Wang, Dulin; Hsu, Yu-Chun; Farrell, Christine; Goodwin, Nathan; Anjum, Sahar; Bukhbinder, Avram S; Dean, Sarah; Khan, Tanveer; Hunter, David; Schulz, Paul E; Jiang, Xiaoqian; Kim, Yejin PLOS digital health 38598464 2024 Apr
A primer for quantum computing and its applications to healthcare and biomedical research. Durant, Thomas J S; Knight, Elizabeth; Nelson, Brent; Dudgeon, Sarah; Lee, Seung J; Walliman, Dominic; Young, Hobart P; Ohno-Machado, Lucila; Schulz, Wade L Journal of the American Medical Informatics Association : JAMIA 38934288 2024 Aug 01
Correlations Between Anxiety and/or Depression Diagnoses and Dysphagia Severity. Doruk, Can; Mocchetti, Valentina; Rives, Hal; Christos, Paul; Rameau, Anaïs The Laryngoscope 37942834 2024 May
ARTIFICIAL INTELLIGENCE FOR OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY-BASED DISEASE ACTIVITY PREDICTION IN AGE-RELATED MACULAR DEGENERATION. Heinke, Anna; Zhang, Haochen; Deussen, Daniel; Galang, Carlo Miguel B; Warter, Alexandra; Kalaw, Fritz Gerald P; Bartsch, Dirk-Uwe G; Cheng, Lingyun; An, Cheolhong; Nguyen, Truong; Freeman, William R Retina (Philadelphia, Pa.) 37988102 2024 Mar 01
SPeC: A Soft Prompt-Based Calibration on Performance Variability of Large Language Model in Clinical Notes Summarization. Chuang, Yu-Neng; Tang, Ruixiang; Jiang, Xiaoqian; Hu, Xia Journal of biomedical informatics 38325698 2024 Mar
Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews and meta-analyses. Zavalis, Emmanuel A; Rameau, Anaïs; Saraswathula, Anirudh; Vist, Joachim; Schuit, Ewoud; Ioannidis, John P BMJ open 38195174 2024 Jan 09
Design and Usability of an Open-Source, Low-Cost Flexible Laryngoscope for Resource-Limited Settings. Srinivasan, Yashes; Shamritsky, David; Bhatta, Asmita; Chou, Ellaine; Pham, Trang; Sanghvi, Yashi; Woolf, Lily; Zhang, Michael; Odigie, Eseosa; Chidziva, Clemence; Muganda, Erasmus; Zimani, Priscilla; de Faria, Newton; Rameau, Anaïs JAMA otolaryngology-- head & neck surgery 38451500 2024 Apr 01
Building a house without foundations? A 24-country qualitative interview study on artificial intelligence in intensive care medicine. McLennan, Stuart; Fiske, Amelia; Celi, Leo Anthony BMJ health & care informatics 38642921 2024 Apr 19
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. Clark, Timothy; Mohan, Jillian; Schaffer, Leah; Obernier, Kirsten; Al Manir, Sadnan; Churas, Christopher P; Dailamy, Amir; Doctor, Yesh; Forget, Antoine; Hansen, Jan Niklas; Hu, Mengzhou; Lenkiewicz, Joanna; Levinson, Maxwell Adam; Marquez, Charlotte; Nourreddine, Sami; Niestroy, Justin; Pratt, Dexter; Qian, Gege; Thaker, Swathi; Bélisle-Pipon, Jean-Christophe; Brandt, Cynthia; Chen, Jake; Ding, Ying; Fodeh, Samah; Krogan, Nevan; Lundberg, Emma; Mali, Prashant; Payne-Foster, Pamela; Ratcliffe, Sarah; Ravitsky, Vardit; Sali, Andrej; Schulz, Wade; Ideker, Trey bioRxiv : the preprint server for biology 38826258 2024 May 24
Artificial Intelligence in Otolaryngology: Topics in Epistemology & Ethics. Tai, Katie; Zhao, Robin; Rameau, Anaïs Otolaryngologic clinics of North America 38839555 2024 Oct
Robust genome and cell engineering via in vitro and in situ circularized RNAs. Tong, Michael; Palmer, Nathan; Dailamy, Amir; Kumar, Aditya; Khaliq, Hammza; Han, Sangwoo; Finburgh, Emma; Wing, Madeleine; Hong, Camilla; Xiang, Yichen; Miyasaki, Katelyn; Portell, Andrew; Rainaldi, Joseph; Suhardjo, Amanda; Nourreddine, Sami; Chew, Wei Leong; Kwon, Ester J; Mali, Prashant Nature biomedical engineering 39187662 2024 Aug 26
Ethical considerations for large language models in ophthalmology. Kalaw, Fritz Gerald P; Baxter, Sally L Current opinion in ophthalmology 39259616 2024 Nov 01
Interface-guided phenotyping of coding variants in the transcription factor RUNX1. Ozturk, Kivilcim; Panwala, Rebecca; Sheen, Jeanna; Ford, Kyle; Jayne, Nathan; Portell, Andrew; Zhang, Dong-Er; Hutter, Stephan; Haferlach, Torsten; Ideker, Trey; Mali, Prashant; Carter, Hannah Cell reports 38968069 2024 Jul 23
Virtual Reality for Pain Management During High-Resolution Manometry: A Randomized Clinical Trial. Palte, Ilan; Stewart, Sarah; Rives, Hal; Curtis, James A; Enver, Necati; Tritter, Andrew; Andreadis, Katerina; Mocchetti, Valentina; Schnoll-Sussman, Felice; Soumekh, Amir; Zarnegar, Rasa; Katz, Philip; Rameau, Anaïs The Laryngoscope 37497865 2024 Mar
PipeVal: light-weight extensible tool for file validation. Patel, Yash; Beshlikyan, Arpi; Jordan, Madison; Kim, Gina; Holmes, Aaron; Yamaguchi, Takafumi N; Boutros, Paul C Bioinformatics (Oxford, England) 38341658 2024 Feb 01
NFTest: automated testing of Nextflow pipelines. Patel, Yash; Zhu, Chenghao; Yamaguchi, Takafumi N; Bugh, Yuan Zhe; Tian, Mao; Holmes, Aaron; Fitz-Gibbon, Sorel T; Boutros, Paul C Bioinformatics (Oxford, England) 38341660 2024 Feb 01
BRSET: A Brazilian Multilabel Ophthalmological Dataset of Retina Fundus Photos. Nakayama, Luis Filipe; Restrepo, David; Matos, João; Ribeiro, Lucas Zago; Malerbi, Fernando Korn; Celi, Leo Anthony; Regatieri, Caio Saito medRxiv : the preprint server for health sciences 38343827 2024 Jan 23
Mondrian Abstraction and Language Model Embeddings for Differential Pathway Analysis. Al Abir, Fuad; Chen, Jake Y bioRxiv : the preprint server for biology 38659966 2024 Aug 19
DF-DM: A foundational process model for multimodal data fusion in the artificial intelligence era. Restrepo, David; Wu, Chenwei; Vásquez-Venegas, Constanza; Nakayama, Luis Filipe; Celi, Leo Anthony; López, Diego M Research square 38746100 2024 Apr 23
Social Determinants of Health and Limitation of Life-Sustaining Therapy in Neurocritical Care: A CHoRUS Pilot Project. Kwak, Gloria Hyunjung; Kamdar, Hera A; Douglas, Molly J; Hu, Hui; Ack, Sophie E; Lissak, India A; Williams, Andrew E; Yechoor, Nirupama; Rosenthal, Eric S Neurocritical care 38844599 2024 Jun 06
Patient-Centered Equitable and Safe Artificial Intelligence in Otolaryngology-Head and Neck Surgery. Tai, Katherine; Zhao, Robin; Rameau, Anaïs Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 38943446 2024 Jun 29
High Prevalence of Artifacts in Optical Coherence Tomography With Adequate Signal Strength. Lin, Wei-Chun; Coyner, Aaron S; Amankwa, Charles E; Lucero, Abigail; Wollstein, Gadi; Schuman, Joel S; Ishikawa, Hiroshi Translational vision science & technology 39196579 2024 Aug 01
Developing an image-based grading scale for peripheral drusen to investigate associations of peripheral drusen type with age-related macular degeneration. Sharma, Paripoorna; Kalaw, Fritz Gerald P; Lin, Andrew; Walker, Evan H; Borooah, Shyamanga Scientific reports 39198593 2024 Aug 29
Competing interests: digital health and indigenous data sovereignty. Cordes, Ashley; Bak, Marieke; Lyndon, Mataroria; Hudson, Maui; Fiske, Amelia; Celi, Leo Anthony; McLennan, Stuart NPJ digital medicine 38965365 2024 Jul 04
Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. Low, Daniel M; Rao, Vishwanatha; Randolph, Gregory; Song, Phillip C; Ghosh, Satrajit S medRxiv : the preprint server for health sciences 33501466 2024 Mar 20
Validation of a 3D-Printed Percutaneous Injection Laryngoplasty Simulator: A Randomized Controlled Trial. Kostas, Julianna C; Lee, Andrew S; Arunkumar, Amit; Han, Catherine; Lee, Mark; Goel, Alexander N; Alrassi, James; Crosby, Tyler; Clark, Christine M; Amin, Milan; Abu-Ghanem, Sara; Kirke, Diana; Rameau, Anaïs The Laryngoscope 37466294 2024 Jan
Ultra-wide field and new wide field composite retinal image registration with AI-enabled pipeline and 3D distortion correction algorithm. Kalaw, Fritz Gerald P; Cavichini, Melina; Zhang, Junkang; Wen, Bo; Lin, Andrew C; Heinke, Anna; Nguyen, Truong; An, Cheolhong; Bartsch, Dirk-Uwe G; Cheng, Lingyun; Freeman, William R Eye (London, England) 38114568 2024 Apr
Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms. Steinberg, Philippa L; Liu, Lydia Y; Neiman-Golden, Anna; Patel, Yash; Boutros, Paul C bioRxiv : the preprint server for biology 38370678 2024 Feb 08
Current Practices in Voice Data Collection and Limitations to Voice AI Research: A National Survey. Evangelista, Emily; Kale, Rohan; McCutcheon, Desiree; Rameau, Anais; Gelbard, Alexander; Powell, Maria; Johns, Michael; Law, Anthony; Song, Phillip; Naunheim, Matthew; Watts, Stephanie; Bryson, Paul C; Crowson, Matthew G; Pinto, Jeremy; Bridge2AI-Voice; Bensoussan, Yael The Laryngoscope 38087983 2024 Mar
Peer review of GPT-4 technical report and systems card. Gallifant, Jack; Fiske, Amelia; Levites Strekalova, Yulia A; Osorio-Valencia, Juan S; Parke, Rachael; Mwavu, Rogers; Martinez, Nicole; Gichoya, Judy Wawira; Ghassemi, Marzyeh; Demner-Fushman, Dina; McCoy, Liam G; Celi, Leo Anthony; Pierce, Robin PLOS digital health 38236824 2024 Jan
Cough Sounds in Screening and Diagnostics: A Scoping Review. Hegde, Siddhi; Sreeram, Shreya; Alter, Isaac L; Shor, Chaya; Valdez, Tulio A; Meister, Kara D; Rameau, Anaïs The Laryngoscope 37672667 2024 Mar
Long-Term Surgical Outcomes of Glaucoma Drainage Implants in Eyes with Preoperative Intraocular Pressure Less than 19 mmHg. Hallaj, Shahin; Wong, Jae-Chiang; Hock, Lauren E; Kolomeyer, Natasha Nayak; Shukla, Aakriti G; Pro, Michael J; Moster, Marlene R; Myers, Jonathan S; Razeghinejad, Reza; Lee, Daniel Journal of ophthalmology 38304290 2024
Effect of manual OCTA segmentation correction to improve image quality and visibility of choroidal neovascularization in AMD. Deussen, Daniel N; Heinke, Anna; Elsner, Wyatt; Galang, Carlo Miguel B; Kalaw, Fritz Gerald P; Warter, Alexandra; Bartsch, Dirk-Uwe; Cheng, Lingyun; Freeman, William R Scientific reports 38886462 2024 Jun 18
De novo generation of multi-target compounds using deep generative chemistry. Munson, Brenton P; Chen, Michael; Bogosian, Audrey; Kreisberg, Jason F; Licon, Katherine; Abagyan, Ruben; Kuenzi, Brent M; Ideker, Trey Nature communications 38710699 2024 May 06
Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review. Lacson, Roger; Yu, Yufei; Kuo, Tsung-Ting; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA 38726710 2024 May 20
Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. Low, Daniel M; Rao, Vishwanatha; Randolph, Gregory; Song, Phillip C; Ghosh, Satrajit S PLOS digital health 38814939 2024 May
Elective Surgery Trends and Outcomes of Nonagenarians and Centenarians in Otolaryngology-Head and Neck Surgery: A NSQIP Study. Srinivasan, Yashes; Briano, Juan; Czaja, Sara; Lachs, Mark S; Rosen, Anthony E; Stewart, Michael G; Rameau, Anaïs The Laryngoscope 38587164 2024 Sep
Voice Disorders and Hearing Loss May Be Additive Risk Factors for Depression in a National Cohort. Rameau, Anaïs; Tucker, Lauren H; Denham, Michael W; Kang, Yung Jee; Choi, Nayeon; Lachs, Mark; Rosen, Tony Ehren; Stewart, Michael; Czaja, Sara; Golub, Justin S The Laryngoscope 38804637 2024 Sep
Just how transformative will AI/ML be for immuno-oncology? Bottomly, Daniel; McWeeney, Shannon Journal for immunotherapy of cancer 38531545 2024 Mar 25
Artificial intelligence in healthcare: Opportunities come with landmines. Iqbal, Usman; Hsu, Yi-Hsin Elsa; Celi, Leo Anthony; Li, Yu-Chuan Jack BMJ health & care informatics 38839426 2024 Jun 05
A Clinician's Guide to Sharing Data for AI in Ophthalmology. Gim, Nayoon; Wu, Yue; Blazes, Marian; Lee, Cecilia S; Wang, Ruikang K; Lee, Aaron Y Investigative ophthalmology & visual science 38864811 2024 Jun 03
Multi-modal contrastive learning of subcellular organization using DICE. Nasser, Rami; Schaffer, Leah V; Ideker, Trey; Sharan, Roded Bioinformatics (Oxford, England) 39230695 2024 Sep 01
Deriving Automated Device Metadata From Intracranial Pressure Waveforms: A Transforming Research and Clinical Knowledge in Traumatic Brain Injury ICU Physiology Cohort Analysis. Ack, Sophie E; Dolmans, Rianne G F; Foreman, Brandon; Manley, Geoffrey T; Rosenthal, Eric S; Zabihi, Morteza Critical care explorations 39016273 2024 Jul 01
Concurrent Validity of a Low-Cost Manometer for Objective Assessments of Respiratory Muscle Strength. Curtis, James A; Mocchetti, Valentina; Rameau, Anaïs The Laryngoscope 37837395 2024 Apr
Minimizing bias when using artificial intelligence in critical care medicine. Ranard, Benjamin L; Park, Soojin; Jia, Yugang; Zhang, Yiye; Alwan, Fatima; Celi, Leo Anthony; Lusczek, Elizabeth R Journal of critical care 38552451 2024 Aug
Does diversity beget diversity? A scientometric analysis of over 150,000 studies and 49,000 authors published in high-impact medical journals between 2007 and 2022. Charpignon, Marie-Laure; Matos, João; Nakayama, Luis; Gallifant, Jack; Alfonso, Pia Gabrielle I; Cobanaj, Marisa; Fiske, Amelia; Gates, Alexander J; Ho, Frances Dominique V; Jain, Urvish; Kashkooli, Mohammad; McCoy, Liam G; Shaffer, Jonathan; Link Woite, Naira; Celi, Leo Anthony medRxiv : the preprint server for health sciences 38562711 2024 Mar 22
Why federated learning will do little to overcome the deeply embedded biases in clinical medicine. Sauer, Christopher Martin; Pucher, Gernot; Celi, Leo Anthony Intensive care medicine 38829532 2024 Aug
Female Surgical Ergonomics in Otolaryngology: A National Survey Study. Morse, Elliot; Tai, Katherine; Harpel, Lexa; Born, Hayley; Krishna, Priya; Rameau, Anaïs Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 37890071 2024 Mar
In Response to Concurrent Validity of the IOPI and Tongueometer Orofacial Strength Measurement Devices. Curtis, James A; Mocchetti, Valentina; Rameau, Anaïs The Laryngoscope 37905777 2024 Jan
Evaluation of large language models for discovery of gene set function. Hu, Mengzhou; Alkhairy, Sahar; Lee, Ingoo; Pillich, Rudolf T; Fong, Dylan; Smith, Kevin; Bachelder, Robin; Ideker, Trey; Pratt, Dexter ArXiv 37731657 2024 Apr 01
Developing a Continuous Severity Scale for Macular Telangiectasia Type 2 Using Deep Learning and Implications for Disease Grading. Wu, Yue; Egan, Catherine; Olvera-Barrios, Abraham; Scheppke, Lea; Peto, Tunde; Charbel Issa, Peter; Heeren, Tjebo F C; Leung, Irene; Rajesh, Anand E; Tufail, Adnan; Lee, Cecilia S; Chew, Emily Y; Friedlander, Martin; Lee, Aaron Y Ophthalmology 37739233 2024 Feb
Using Generative Artificial Intelligence in the Production and Dissemination of Innovation in Otolaryngology-Ethical Considerations. Khoury, Carolyn Jane; Enver, Necati; Paderno, Alberto; Ratti, Emanuele; Rameau, Anaïs Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 38044483 2024 Jun
Testing the 'Faith Moves Mountains model' to increase Alzheimer's disease awareness, detection, and diagnosis among rural, racially, and ethnically diverse older adults. Wiese, Lisa Kirk; Williams, Ishan C; Holt, Janet K; Williams, Christine L; Lingler, Jennifer; Galvin, James E; Schoenberg, Nancy E Aging & mental health 38127408 2024 Jun
Tools for assembling the cell: Towards the era of cell structural bioinformatics. Hu, Mengzhou; Zhang, Xikun; Latham, Andrew; Šali, Andrej; Ideker, Trey; Lundberg, Emma Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 38160316 2024
Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes. Cesnik, Anthony; Schaffer, Leah V; Gaur, Ishan; Jain, Mayank; Ideker, Trey; Lundberg, Emma Annual review of biomedical data science 38748859 2024 Aug
A multimodal framework for extraction and fusion of satellite images and public health data. Moukheiber, Dana; Restrepo, David; Cajas, Sebastián Andrés; Montoya, María Patricia Arbeláez; Celi, Leo Anthony; Kuo, Kuan-Ting; López, Diego M; Moukheiber, Lama; Moukheiber, Mira; Moukheiber, Sulaiman; Osorio-Valencia, Juan Sebastian; Purkayastha, Saptarshi; Paddo, Atika Rahman; Wu, Chenwei; Kuo, Po-Chih Scientific data 38879585 2024 Jun 15
Differences in macular thickness associated with peripheral retinal vessel whitening in diabetic patients. Kalaw, Fritz Gerald P; Sharma, Paripoorna; Walker, Evan; Borooah, Shyamanga Scientific reports 39191790 2024 Aug 27
Best practices to evaluate the impact of biomedical research software-metric collection beyond citations. Afiaz, Awan; Ivanov, Andrey A; Chamberlin, John; Hanauer, David; Savonen, Candace L; Goldman, Mary J; Morgan, Martin; Reich, Michael; Getka, Alexander; Holmes, Aaron; Pati, Sarthak; Knight, Dan; Boutros, Paul C; Bakas, Spyridon; Caporaso, J Gregory; Del Fiol, Guilherme; Hochheiser, Harry; Haas, Brian; Schloss, Patrick D; Eddy, James A; Albrecht, Jake; Fedorov, Andrey; Waldron, Levi; Hoffman, Ava M; Bradshaw, Richard L; Leek, Jeffrey T; Wright, Carrie Bioinformatics (Oxford, England) 39067017 2024 Aug 02
Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. Low, Daniel M; Rao, Vishwanatha; Randolph, Gregory; Song, Phillip C; Ghosh, Satrajit S medRxiv : the preprint server for health sciences 33501466 2023 Oct 23
Early Biomarker Signatures in Surgical Sepsis. Madushani, R W M A; Patel, Vishal; Loftus, Tyler; Ren, Yuanfang; Li, Han Jacob; Velez, Laura; Wu, Quran; Adhikari, Lasith; Efron, Philip; Segal, Mark; Ozrazgat-Baslanti, Tezcan; Rashidi, Parisa; Bihorac, Azra; Sepsis and Critical Illness Research Center Investigators The Journal of surgical research 35569215 2022 Sep
Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. Wu, Yue; Olvera-Barrios, Abraham; Yanagihara, Ryan; Kung, Timothy-Paul H; Lu, Randy; Leung, Irene; Mishra, Amit V; Nussinovitch, Hanan; Grimaldi, Gabriela; Blazes, Marian; Lee, Cecilia S; Egan, Catherine; Tufail, Adnan; Lee, Aaron Y Ophthalmology 36154868 2022 Sep 22
Quorum-based model learning on a blockchain hierarchical clinical research network using smart contracts. Kuo, Tsung-Ting; Pham, Anh International journal of medical informatics 36402113 2023 Jan
Continuous ECG monitoring should be the heart of bedside AI-based predictive analytics monitoring for early detection of clinical deterioration. Monfredi, Oliver J; Moore, Christopher C; Sullivan, Brynne A; Keim-Malpass, Jessica; Fairchild, Karen D; Loftus, Tyler J; Bihorac, Azra; Krahn, Katherine N; Dubrawski, Artur; Lake, Douglas E; Moorman, J Randall; Clermont, Gilles Journal of electrocardiology 36434848 2023
Multi-dimensional patient acuity estimation with longitudinal EHR tokenization and flexible transformer networks. Shickel, Benjamin; Silva, Brandon; Ozrazgat-Baslanti, Tezcan; Ren, Yuanfang; Khezeli, Kia; Guan, Ziyuan; Tighe, Patrick J; Bihorac, Azra; Rashidi, Parisa Frontiers in digital health 36440460 2022
Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. Lee, Cecilia S; Krakauer, Chloe; Su, Yu-Ru; Walker, Rod; Blazes, Marian; McCurry, Susan M; Bowen, James D; McCormick, Wayne C; Lee, Aaron Y; Boyko, Edward; O'Hare, Ann; Larson, Eric B; Crane, Paul K American journal of ophthalmology 36513155 2022 Dec 10
RNA editing: Expanding the potential of RNA therapeutics. Booth, Brian J; Nourreddine, Sami; Katrekar, Dhruva; Savva, Yiannis; Bose, Debojit; Long, Thomas J; Huss, David J; Mali, Prashant Molecular therapy : the journal of the American Society of Gene Therapy 36620962 2023 Jan 07
ADGR: Admixture-Informed Differential Gene Regulation. Lee, In-Hee; Kong, Sek Won Genes 36672888 2023 Jan 05
Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews. Zavalis, Emmanuel A; Rameau, Anaïs; Saraswathula, Anirudh; Vist, Joachim; Schuit, Ewoud; Ioannidis, John P A medRxiv : the preprint server for health sciences 36778340 2023 Feb 01
Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. Kuo, Tsung-Ting; Pham, Anh; Edelson, Maxim E; Kim, Jihoon; Chan, Jason; Gupta, Yash; Ohno-Machado, Lucila; R2D2 Consortium Journal of the American Medical Informatics Association : JAMIA 36916740 2023 May 19
Human-Centered Design to Address Biases in Artificial Intelligence. Chen, You; Clayton, Ellen Wright; Novak, Laurie Lovett; Anders, Shilo; Malin, Bradley Journal of medical Internet research 36961506 2023 Mar 24
Female Surgical Ergonomics in Otolaryngology: A Qualitative Study. Morse, Elliot; Harpel, Lexa; Born, Hayley; Rameau, Anaïs The Laryngoscope 37096670 2023 Apr 25
Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation. Ford, Kyle; Munson, Brenton P; Fong, Samson H; Panwala, Rebecca; Chu, Wai Keung; Rainaldi, Joseph; Plongthongkum, Nongluk; Arunachalam, Vinayagam; Kostrowicki, Jarek; Meluzzi, Dario; Kreisberg, Jason F; Jensen-Pergakes, Kristen; VanArsdale, Todd; Paul, Th Scientific reports 37169829 2023 May 11
Using Natural Language Processing to Predict Fatal Drug Overdose From Autopsy Narrative Text: Algorithm Development and Validation Study. Tang, Leigh Anne; Korona-Bailey, Jessica; Zaras, Dimitrios; Roberts, Allison; Mukhopadhyay, Sutapa; Espy, Stephen; Walsh, Colin G JMIR public health and surveillance 37204824 2023 May 19
A multi-scale map of protein assemblies in the DNA damage response. Kratz, Anton; Kim, Minkyu; Kelly, Marcus R; Zheng, Fan; Koczor, Christopher A; Li, Jianfeng; Ono, Keiichiro; Qin, Yue; Churas, Christopher; Chen, Jing; Pillich, Rudolf T; Park, Jisoo; Modak, Maya; Collier, Rachel; Licon, Kate; Pratt, Dexter; Sobol, Robert Cell systems 37220749 2023 Jun 21
Race, Ethnicity, Insurance and Population Density Associations with Pediatric Strabismus and Strabismic Amblyopia in the IRIS® Registry. Rajesh, Anand E; Davidson, Oliver; Lacy, Megan; Chandramohan, Arthika; Lee, Aaron Y; Lee, Cecilia S; Tarczy-Hornoch, Kristina; IRIS® Registry Analytic Center Consortium Ophthalmology 37331481 2023 Jun 16
Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? Afiaz, Awan; Ivanov, Andrey; Chamberlin, John; Hanauer, David; Savonen, Candace; Goldman, Mary J; Morgan, Martin; Reich, Michael; Getka, Alexander; Holmes, Aaron; Pati, Sarthak; Knight, Dan; Boutros, Paul C; Bakas, Spyridon; Caporaso, J Gregory; Fiol, Guilherme Del; Hochheiser, Harry; Haas, Brian; Schloss, Patrick D; Eddy, James A; Albrecht, Jake; Fedorov, Andrey; Waldron, Levi; Hoffman, Ava M; Bradshaw, Richard L; Leek, Jeffrey T; Wright, Carrie ArXiv 37332562 2023 Jun 05
Optimized Risk Score to Predict Mortality in Patients With Cardiogenic Shock in the Cardiac Intensive Care Unit. Yamga, Eric; Mantena, Sreekar; Rosen, Darin; Bucholz, Emily M; Yeh, Robert W; Celi, Leo A; Ustun, Berk; Butala, Neel M Journal of the American Heart Association 37345819 2023 Jul 04
Practice-Pattern Variation in Sedation of Neurotrauma Patients in the Intensive Care Unit: An International Survey. Dolmans, Rianne G F; Nahed, Brian V; Robertson, Faith C; Peul, Wilco C; Rosenthal, Eric S; Broekman, Marike L D Journal of intensive care medicine 37415510 2023 Dec
Ethnicity is not biology: retinal pigment score to evaluate biological variability from ophthalmic imaging using machine learning. Rajesh, Anand E; Olvera-Barrios, Abraham; Warwick, Alasdair N; Wu, Yue; Stuart, Kelsey V; Biradar, Mahantesh; Ung, Chuin Ying; Khawaja, Anthony P; Luben, Robert; Foster, Paul J; Lee, Cecilia S; Tufail, Adnan; Lee, Aaron Y; Egan, Catherine; EPIC Norfolk, U medRxiv : the preprint server for health sciences 37461664 2023 Jul 06
Validation of a 3D-Printed Percutaneous Injection Laryngoplasty Simulator: A Randomized Controlled Trial. Kostas, Julianna C; Lee, Andrew S; Arunkumar, Amit; Han, Catherine; Lee, Mark; Goel, Alexander N; Alrassi, James; Crosby, Tyler; Clark, Christine M; Amin, Milan; Abu-Ghanem, Sara; Kirke, Diana; Rameau, Anaïs The Laryngoscope 37466294 2024 Jan
Evaluating Access to Laser Eye Surgery by Driving Times Using Medicare Data and Geographical Mapping. Shaffer, Jamie; Rajesh, Anand; Stewart, Michael W; Lee, Aaron Y; Miller, Darby D; Lee, Cecilia S; Francis, Courtney E JAMA ophthalmology 37471084 2023 Aug 01
Virtual Reality for Pain Management During High-Resolution Manometry: A Randomized Clinical Trial. Palte, Ilan; Stewart, Sarah; Rives, Hal; Curtis, James A; Enver, Necati; Tritter, Andrew; Andreadis, Katerina; Mocchetti, Valentina; Schnoll-Sussman, Felice; Soumekh, Amir; Zarnegar, Rasa; Katz, Philip; Rameau, Anaïs The Laryngoscope 37497865 2023 Jul 27
Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial Networks. Li, Bin; Shi, Xinghua; Gao, Hongchang; Jiang, Xiaoqian; Zhang, Kai; Harmanci, Arif O; Malin, Bradley bioRxiv : the preprint server for biology 37609241 2023 Aug 26
Microperimetry Findings in Pentosan Polysulfate Maculopathy. Most, Jesse; Kalaw, Fritz Gerald P; Walker, Evan; Arias, Juan D; Charng, Jason; Baxter, Sally L; Nudleman, Eric; Ferreyra, Henry; Freeman, William R; Chen, Fred K; Borooah, Shyamanga Ophthalmology. Retina 37619623 2023 Nov
Artificial Intelligence Governance and Otolaryngology-Head and Neck Surgery. Nwosu, Obinna I; Crowson, Matthew G; Rameau, Anaïs The Laryngoscope 37658749 2023 Nov
Cough Sounds in Screening and Diagnostics: A Scoping Review. Hegde, Siddhi; Sreeram, Shreya; Alter, Isaac L; Shor, Chaya; Valdez, Tulio A; Meister, Kara D; Rameau, Anaïs The Laryngoscope 37672667 2023 Sep 06
Outcomes of Gender-Affirming Voice and Communication Modification Training for Non-binary Individuals: A Case Series. Chadwick, Keith A; Liao, David; Alter, Isaac L; Coleman, Rachel; Andreadis, Katerina; Riekki, Rebecca; Waldman, Jack; Rives, Hal; Pitti, Mary; Rameau, Anaïs Journal of voice : official journal of the Voice Foundation 37673753 2023 Sep 04
Common Data Elements for Disorders of Consciousness: Recommendations from the Working Group on Physiology and Big Data. Beqiri, Erta; Badjatia, Neeraj; Ercole, Ari; Foreman, Brandon; Hu, Peter; Hu, Xiao; LaRovere, Kerri; Meyfroidt, Geert; Moberg, Dick; Robba, Chiara; Rosenthal, Eric S; Smielewski, Peter; Wainwright, Mark S; Park, Soojin; Curing Coma Campaign and its Contri Neurocritical care 37704934 2023 Dec
Investigating the Influence of Artificial Intelligence on Adolescent Health: An Urgent Call to Action. Brisson, Julien; Bélisle-Pipon, Jean-Christophe; Ravitsky, Vardit The Journal of adolescent health : official publication of the Society for Adolescent Medicine 37716717 2023 Oct
Artificial Intelligence and Diabetic Retinopathy: AI Framework, Prospective Studies, Head-to-head Validation, and Cost-effectiveness. Rajesh, Anand E; Davidson, Oliver Q; Lee, Cecilia S; Lee, Aaron Y Diabetes care 37729502 2023 Oct 01
Trends and practices following the 2016 hydroxychloroquine screening guidelines. Kalaw, Fritz Gerald P; Arnett, Justin; Baxter, Sally L; Walker, Evan; Pedersen, Brian; Borooah, Shyamanga Scientific reports 37730825 2023 Sep 20
Evaluation of large language models for discovery of gene set function. Hu, Mengzhou; Alkhairy, Sahar; Lee, Ingoo; Pillich, Rudolf T; Bachelder, Robin; Ideker, Trey; Pratt, Dexter ArXiv 37731657 2023 Sep 07
Developing a Continuous Severity Scale for Macular Telangiectasia Type 2 Using Deep Learning and Implications for Disease Grading. Wu, Yue; Egan, Catherine; Olvera-Barrios, Abraham; Scheppke, Lea; Peto, Tunde; Charbel Issa, Peter; Heeren, Tjebo F C; Leung, Irene; Rajesh, Anand E; Tufail, Adnan; Lee, Cecilia S; Chew, Emily Y; Friedlander, Martin; Lee, Aaron Y Ophthalmology 37739233 2023 Sep 20
Generative AI, Specific Moral Values: A Closer Look at ChatGPT's New Ethical Implications for Medical AI. Victor, Gavin; Bélisle-Pipon, Jean-Christophe; Ravitsky, Vardit The American journal of bioethics : AJOB 37812098 2023 Oct
A comparative atlas of single-cell chromatin accessibility in the human brain. Li, Yang Eric; Preissl, Sebastian; Miller, Michael; Johnson, Nicholas D; Wang, Zihan; Jiao, Henry; Zhu, Chenxu; Wang, Zhaoning; Xie, Yang; Poirion, Olivier; Kern, Colin; Pinto-Duarte, Antonio; Tian, Wei; Siletti, Kimberly; Emerson, Nora; Osteen, Julia; Lucero, Jacinta; Lin, Lin; Yang, Qian; Zhu, Quan; Zemke, Nathan; Espinoza, Sarah; Yanny, Anna Marie; Nyhus, Julie; Dee, Nick; Casper, Tamara; Shapovalova, Nadiya; Hirschstein, Daniel; Hodge, Rebecca D; Linnarsson, Sten; Bakken, Trygve; Levi, Boaz; Keene, C Dirk; Shang, Jingbo; Lein, Ed; Wang, Allen; Behrens, M Margarita; Ecker, Joseph R; Ren, Bing Science (New York, N.Y.) 37824643 2023 Oct 13
Concurrent Validity of a Low-Cost Manometer for Objective Assessments of Respiratory Muscle Strength. Curtis, James A; Mocchetti, Valentina; Rameau, Anaïs The Laryngoscope 37837395 2024 Apr
Forecasting algorithms in the ICU. Rooney, Sydney R; Clermont, Gilles Journal of electrocardiology 37883866 2023
Female Surgical Ergonomics in Otolaryngology: A National Survey Study. Morse, Elliot; Tai, Katherine; Harpel, Lexa; Born, Hayley; Krishna, Priya; Rameau, Anaïs Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 37890071 2023 Oct 27
In Response to Concurrent Validity of the IOPI and Tongueometer Orofacial Strength Measurement Devices. Curtis, James A; Mocchetti, Valentina; Rameau, Anaïs The Laryngoscope 37905777 2024 Jan
Correlations Between Anxiety and/or Depression Diagnoses and Dysphagia Severity. Doruk, Can; Mocchetti, Valentina; Rives, Hal; Christos, Paul; Rameau, Anaïs The Laryngoscope 37942834 2023 Nov 09
Predicting multiple sclerosis severity with multimodal deep neural networks. Zhang, Kai; Lincoln, John A; Jiang, Xiaoqian; Bernstam, Elmer V; Shams, Shayan BMC medical informatics and decision making 37946182 2023 Nov 09
POSTCARDS from a SIESTA: Crossing the Translational and Generalizability Gap for Predictive Models of Acute Respiratory Distress Syndrome-Related Mortality. Wong, An-Kwok Ian; Kamaleswaran, Rishikesan Critical care medicine 37971334 2023 Dec 01
ClotCatcher: a novel natural language model to accurately adjudicate venous thromboembolism from radiology reports. Wang, Jeffrey; de Vale, Joao Souza; Gupta, Saransh; Upadhyaya, Pulakesh; Lisboa, Felipe A; Schobel, Seth A; Elster, Eric A; Dente, Christopher J; Buchman, Timothy G; Kamaleswaran, Rishikesan BMC medical informatics and decision making 37974186 2023 Nov 16
Artificial intelligence for OCTA-based disease activity prediction in age-related macular degeneration. Heinke, Anna; Zhang, Haochen; Deussen, Daniel; Galang, Carlo Miguel B; Warter, Alexandra; Paguiligan Kalaw, Fritz Gerald; Bartsch, Dirk-Uwe G; Cheng, Lingyun; An, Cheolhong; Nguyen, Truong; Freeman, William R Retina (Philadelphia, Pa.) 37988102 2023 Oct 31
Large language models and their impact in ophthalmology. Betzler, Bjorn Kaijun; Chen, Haichao; Cheng, Ching-Yu; Lee, Cecilia S; Ning, Guochen; Song, Su Jeong; Lee, Aaron Y; Kawasaki, Ryo; van Wijngaarden, Peter; Grzybowski, Andrzej; He, Mingguang; Li, Dawei; Ran Ran, An; Ting, Daniel Shu Wei; Teo, Kelvin; Ruamv The Lancet. Digital health 38000875 2023 Dec
Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. Kalaw, Fritz Gerald P; Tavakoli, Kiana; Baxter, Sally L Ophthalmology science 38025157 2023 Dec
A Novel Low-Cost, Open-Source, Three-Dimensionally Printed Thyroplasty Simulator. Kostas, Julianna C; Lee, Mark; Rameau, Anaïs Journal of voice : official journal of the Voice Foundation 38036381 2023 Nov 29
Using Generative Artificial Intelligence in the Production and Dissemination of Innovation in Otolaryngology-Ethical Considerations. Khoury, Carolyn Jane; Enver, Necati; Paderno, Alberto; Ratti, Emanuele; Rameau, Anaïs Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 38044483 2023 Dec 03
BOSC 2023, the 24th annual Bioinformatics Open Source Conference. Harris, Nomi L; Fields, Christopher J; Hokamp, Karsten; Just, Jérémy; Khetani, Radhika; Maia, Jessica; Ménager, Hervé; Munoz-Torres, Monica C; Unni, Deepak; Williams, Jason F1000Research 38076297 2023
Current Practices in Voice Data Collection and Limitations to Voice AI Research: A National Survey. Evangelista, Emily; Kale, Rohan; McCutcheon, Desiree; Rameau, Anais; Gelbard, Alexander; Powell, Maria; Johns, Michael; Law, Anthony; Song, Phillip; Naunheim, Matthew; Watts, Stephanie; Bryson, Paul C; Crowson, Matthew G; Pinto, Jeremy; Bridge2AI-Voice; B The Laryngoscope 38087983 2023 Dec 13
Ultra-wide field and new wide field composite retinal image registration with AI-enabled pipeline and 3D distortion correction algorithm. Kalaw, Fritz Gerald P; Cavichini, Melina; Zhang, Junkang; Wen, Bo; Lin, Andrew C; Heinke, Anna; Nguyen, Truong; An, Cheolhong; Bartsch, Dirk-Uwe G; Cheng, Lingyun; Freeman, William R Eye (London, England) 38114568 2023 Dec 19
Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews and meta-analyses. Zavalis, Emmanuel A; Rameau, Anaïs; Saraswathula, Anirudh; Vist, Joachim; Schuit, Ewoud; Ioannidis, John P BMJ open 38195174 2024 Jan 09
Split Learning for Distributed Collaborative Training of Deep Learning Models in Health Informatics. Li, Zhuohang; Yan, Chao; Zhang, Xinmeng; Gharibi, Gharib; Yin, Zhijun; Jiang, Xiaoqian; Malin, Bradley A AMIA ... Annual Symposium proceedings. AMIA Symposium 38222326 2023
Large Language Models for Healthcare Data Augmentation: An Example on Patient-Trial Matching. Yuan, Jiayi; Tang, Ruixiang; Jiang, Xiaoqian; Hu, Xia AMIA ... Annual Symposium proceedings. AMIA Symposium 38222339 2023
Sensitive Data Detection with High-Throughput Machine Learning Models in Electrical Health Records. Zhang, Kai; Jiang, Xiaoqian AMIA ... Annual Symposium proceedings. AMIA Symposium 38222389 2023
Peer review of GPT-4 technical report and systems card. Gallifant, Jack; Fiske, Amelia; Levites Strekalova, Yulia A; Osorio-Valencia, Juan S; Parke, Rachael; Mwavu, Rogers; Martinez, Nicole; Gichoya, Judy Wawira; Ghassemi, Marzyeh; Demner-Fushman, Dina; McCoy, Liam G; Celi, Leo Anthony; Pierce, Robin PLOS digital health 38236824 2024 Jan
Long-Term Surgical Outcomes of Glaucoma Drainage Implants in Eyes with Preoperative Intraocular Pressure Less than 19 mmHg. Hallaj, Shahin; Wong, Jae-Chiang; Hock, Lauren E; Kolomeyer, Natasha Nayak; Shukla, Aakriti G; Pro, Michael J; Moster, Marlene R; Myers, Jonathan S; Razeghinejad, Reza; Lee, Daniel Journal of ophthalmology 38304290 2024
PipeVal: light-weight extensible tool for file validation. Patel, Yash; Beshlikyan, Arpi; Jordan, Madison; Kim, Gina; Holmes, Aaron; Yamaguchi, Takafumi N; Boutros, Paul C Bioinformatics (Oxford, England) 38341658 2024 Feb 01
NFTest: automated testing of Nextflow pipelines. Patel, Yash; Zhu, Chenghao; Yamaguchi, Takafumi N; Bugh, Yuan Zhe; Tian, Mao; Holmes, Aaron; Fitz-Gibbon, Sorel T; Boutros, Paul C Bioinformatics (Oxford, England) 38341660 2024 Feb 01
BRSET: A Brazilian Multilabel Ophthalmological Dataset of Retina Fundus Photos. Nakayama, Luis Filipe; Restrepo, David; Matos, João; Ribeiro, Lucas Zago; Malerbi, Fernando Korn; Celi, Leo Anthony; Regatieri, Caio Saito medRxiv : the preprint server for health sciences 38343827 2024 Jan 23
Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms. Steinberg, Philippa L; Liu, Lydia Y; Neiman-Golden, Anna; Patel, Yash; Boutros, Paul C bioRxiv : the preprint server for biology 38370678 2024 Feb 08
Just how transformative will AI/ML be for immuno-oncology? Bottomly, Daniel; McWeeney, Shannon Journal for immunotherapy of cancer 38531545 2024 Mar 25
Ensuring Trust in Genomics Research. Ayday, Erman; Vaidya, Jaideep; Jiang, Xiaoqian; Telenti, Amalio ... IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications : (TPS-ISA ...). IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications 38562180 2023 Nov
Does diversity beget diversity? A scientometric analysis of over 150,000 studies and 49,000 authors published in high-impact medical journals between 2007 and 2022. Charpignon, Marie-Laure; Matos, João; Nakayama, Luis; Gallifant, Jack; Alfonso, Pia Gabrielle I; Cobanaj, Marisa; Fiske, Amelia; Gates, Alexander J; Ho, Frances Dominique V; Jain, Urvish; Kashkooli, Mohammad; McCoy, Liam G; Shaffer, Jonathan; Link Woite, medRxiv : the preprint server for health sciences 38562711 2024 Mar 22
Dynamic Delirium Prediction in the Intensive Care Unit using Machine Learning on Electronic Health Records. Contreras, Miguel; Silva, Brandon; Shickel, Benjamin; Bandyopadhyay, Sabyasachi; Guan, Ziyuan; Ren, Yuanfang; Ozrazgat-Baslanti, Tezcan; Khezeli, Kia; Bihorac, Azra; Rashidi, Parisa ... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics 38585187 2023 Oct

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