Bridge to Artificial Intelligence (Bridge2AI)
Bridge to Artificial Intelligence (Bridge2AI)
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date | PubMedLink |
|---|---|---|---|---|---|---|
| Health Equity and Artificial Intelligence in Nephrology. | Engel Hercz A, Nicholas SB, Bui AAT, Norris KC | Clinical journal of the American Society of Nephrology : CJASN | 39874085 | Clin J Am Soc Nephrol | 2025 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/39874085 |
| AI-readiness Criteria for Biomedical Data. | Clark T, Caufield H, Parker JA, Al Manir S, Amorim E, Eddy J, Gim N, Gow B, Goar W, Hansen JN, Harris N, Hermjakob H, Joachimiak M, Jordan G, Lee IH, McWeeney SK, Nebeker C, Nikolov M, Ratcliffe SJ, Reese J, Shaffer J, Sheffield N, Sheynkman G, Stevenson J, Chen JY, Mungall C, Wagner A, Kong SW, Ghosh SS, Patel B, Williams A, Munoz-Torres MC | bioRxiv : the preprint server for biology | 39484409 | bioRxiv | 2026 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/39484409 |
| Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow Pipeline. | Patel Y, Zhu C, Yamaguchi TN, Wang NK, Wiltsie N, Zeltser N, Gonzalez AE, Winata HK, Pan Y, Mootor MFE, Sanders T, Fitz-Gibbon ST, Kandoth C, Livingstone J, Liu LY, Carlin B, Holmes A, Oh J, Sahrmann J, Tao S, Eng S, Hugh-White R, Pashminehazar K, Park A, Beshlikyan A, Jordan M, Wu S, Tian M, Arbet J, Neilsen B, Haas R, Bugh YZ, Kim G, Salmingo J, Zhang W, Anand A, Hwang E, Neiman-Golden A, Steinberg P, Zhao W, Anand P, Agrawal R, Tsai BL, Boutros PC | bioRxiv : the preprint server for biology | 39282325 | bioRxiv | 2025 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/39282325 |
| Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms. | Steinberg PL, Liu LY, Neiman-Golden A, Patel Y, Boutros PC | bioRxiv : the preprint server for biology | 38370678 | bioRxiv | 2024 Feb 8 | https://www.ncbi.nlm.nih.gov/pubmed/38370678 |
| The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository. | Huang YN, Jaiswal PV, Rajes A, Yadav A, Yu D, Liu F, Scheg G, Shih E, Boldirev G, Nakashidze I, Sarkar A, Mehta JH, Wang K, Patel KK, Mirza MAB, Hapani KC, Peng Q, Ayyala R, Guo R, Kapur S, Ramesh T, Ciorbă D, Munteanu V, Bostan V, Dimian M, Abedalthagafi MS, Mangul S | Genome biology | 40926267 | Genome Biol | 2025 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/40926267 |
| ApplyPolygenicScore: An R package for applying polygenic risk score models. | Zeltser N, Dang RMA, Hugh-White R, Knight D, Arbet J, Boutros PC | Genetics in medicine open | 41488031 | Genet Med Open | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41488031 |
| Best practices to evaluate the impact of biomedical research software-metric collection beyond citations. | Afiaz A, Ivanov AA, Chamberlin J, Hanauer D, Savonen CL, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C | Bioinformatics (Oxford, England) | 39067017 | Bioinformatics | 2024 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/39067017 |
| Addressing ethical issues in healthcare artificial intelligence using a lifecycle-informed process. | Collins BX, Bélisle-Pipon JC, Evans BJ, Ferryman K, Jiang X, Nebeker C, Novak L, Roberts K, Were M, Yin Z, Ravitsky V, Coco J, Hendricks-Sturrup R, Williams I, Clayton EW, Malin BA, Bridge2AI Ethics and Trustworthy AI Working Group | JAMIA open | 39553826 | JAMIA Open | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39553826 |
| A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material. | Daniels CA, Abdulkadir A, Cleveland MH, McDaniel JH, Jáspez D, Rubio-Rodríguez LA, Muñoz-Barrera A, Lorenzo-Salazar JM, Flores C, Yoo B, Sahraeian SME, Wang Y, Rossi M, Visvanath A, Murray L, Chen WT, Catreux S, Han J, Mehio R, Parnaby G, Carroll A, Chang PC, Shafin K, Cook D, Kolesnikov A, Brambrink L, Mootor MFE, Patel Y, Yamaguchi TN, Boutros PC, Sienkiewicz K, Foox J, Mason CE, Lajoie BR, Ruiz-Perez CA, Kruglyak S, Zook JM, Olson ND | bioRxiv : the preprint server for biology | 39677813 | bioRxiv | 2024 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/39677813 |
| Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? | Afiaz A, Ivanov AA, Chamberlin J, Hanauer D, Savonen CL, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C | ArXiv | 37332562 | ArXiv | 2023 Jun 5 | https://www.ncbi.nlm.nih.gov/pubmed/37332562 |
| PipeVal: light-weight extensible tool for file validation. | Patel Y, Beshlikyan A, Jordan M, Kim G, Holmes A, Yamaguchi TN, Boutros PC | Bioinformatics (Oxford, England) | 38341658 | Bioinformatics | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/38341658 |
| SyntheVAEiser: augmenting traditional machine learning methods with VAE-based gene expression sample generation for improved cancer subtype predictions. | Karlberg B, Kirchgaessner R, Lee J, Peterkort M, Beckman L, Goecks J, Ellrott K | Genome biology | 39696541 | Genome Biol | 2024 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/39696541 |
| Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundation Models. | Sankar BS, Gilliland D, Rincon J, Hermjakob H, Yan Y, Adam I, Lemaster G, Wang D, Watson K, Bui A, Wang W, Ping P | Bioengineering (Basel, Switzerland) | 39451360 | Bioengineering (Basel) | 2024 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/39451360 |
| Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets. | Ellrott K, Wong CK, Yau C, Castro MAA, Lee JA, Karlberg BJ, Grewal JK, Lagani V, Tercan B, Friedl V, Hinoue T, Uzunangelov V, Westlake L, Loinaz X, Felau I, Wang PI, Kemal A, Caesar-Johnson SJ, Shmulevich I, Lazar AJ, Tsamardinos I, Hoadley KA, Cancer Genome Atlas Analysis Network, Robertson AG, Knijnenburg TA, Benz CC, Stuart JM, Zenklusen JC, Cherniack AD, Laird PW | Cancer cell | 39753139 | Cancer Cell | 2025 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/39753139 |
| Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems. | Pelletier AR, Ramirez J, Sankar BS, Adam I, Yan Y, Steinecke D, Wang W, Watson KE, Ping P | Journal of visualized experiments : JoVE | 40587410 | J Vis Exp | 2025 Jun 13 | https://www.ncbi.nlm.nih.gov/pubmed/40587410 |
| Metapipeline-DNA: A comprehensive germline and somatic genomics Nextflow pipeline. | Patel Y, Zhu C, Yamaguchi TN, Wang NK, Wiltsie N, Zeltser N, Gonzalez AE, Winata HK, Pan Y, Mootor MFE, Sanders T, Fitz-Gibbon ST, Kandoth C, Livingstone J, Liu LY, Carlin B, Holmes A, Oh J, Sahrmann J, Tao S, Eng S, Hugh-White R, Pashminehazar K, Beshlikyan A, Jordan M, Wu S, Tian M, Arbet J, Neilsen B, Haas R, Bugh YZ, Kim G, Salmingo J, Zhang W, Anand A, Hwang E, Neiman-Golden A, Steinberg P, Zhao W, Anand P, Agrawal R, Tsai BL, Boutros PC | Cell reports methods | 41850291 | Cell Rep Methods | 2026 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/41850291 |
| NFTest: automated testing of Nextflow pipelines. | Patel Y, Zhu C, Yamaguchi TN, Bugh YZ, Tian M, Holmes A, Fitz-Gibbon ST, Boutros PC | Bioinformatics (Oxford, England) | 38341660 | Bioinformatics | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/38341660 |
| Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction. | Salcedo A, Tarabichi M, Buchanan A, Espiritu SMG, Zhang H, Zhu K, Ou Yang TH, Leshchiner I, Anastassiou D, Guan Y, Jang GH, Mootor MFE, Haase K, Deshwar AG, Zou W, Umar I, Dentro S, Wintersinger JA, Chiotti K, Demeulemeester J, Jolly C, Sycza L, Ko M, PCAWG Evolution and Heterogeneity Working Group, SMC-Het Participants, Wedge DC, Morris QD, Ellrott K, Van Loo P, Boutros PC | Nature biotechnology | 38862616 | Nat Biotechnol | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38862616 |
| Aggregating multimodal cancer data across unaligned embedding spaces maintains tumor of origin signal. | Kirchgaessner R, Keutler K, Sivakumar L, Song X, Ellrott K | bioRxiv : the preprint server for biology | 40462901 | bioRxiv | 2025 May 18 | https://www.ncbi.nlm.nih.gov/pubmed/40462901 |
| Artificial intelligence in pediatric healthcare: current applications, potential, and implementation considerations. | Park T, Lee IH, Lee SW, Kong SW | Clinical and experimental pediatrics | 40776620 | Clin Exp Pediatr | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40776620 |
| BOSC 2023, the 24th annual Bioinformatics Open Source Conference. | Harris NL, Fields CJ, Hokamp K, Just J, Khetani R, Maia J, Ménager H, Munoz-Torres MC, Unni D, Williams J | F1000Research | 38076297 | F1000Res | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38076297 |
| Discordance between a deep learning model and clinical-grade variant pathogenicity classification in a rare disease cohort. | Kong SW, Lee IH, Collen LV, Field M, Manrai AK, Snapper SB, Mandl KD | NPJ genomic medicine | 40021654 | NPJ Genom Med | 2025 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/40021654 |
| Lithium and the Brain-Bone Axis: A Bridge between Osteoporosis and Alzheimer's Disease. | Lee JW, Hasegawa T, Ikedo A, Mizuno K, Amizuka N, Kong SW | Current osteoporosis reports | 41663782 | Curr Osteoporos Rep | 2026 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/41663782 |
| A sex-specific genome-wide association study of blood lipid levels in All of Us. | Li Y, Lee IH, Kong SW | medRxiv : the preprint server for health sciences | 41332874 | medRxiv | 2025 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/41332874 |
| Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. | Clark T, Mohan J, Schaffer L, Obernier K, Al Manir S, Churas CP, Dailamy A, Doctor Y, Forget A, Hansen JN, Hu M, Lenkiewicz J, Levinson MA, Marquez C, Nourreddine S, Niestroy J, Pratt D, Qian G, Thaker S, Bélisle-Pipon JC, Brandt C, Chen J, Ding Y, Fodeh S, Krogan N, Lundberg E, Mali P, Payne-Foster P, Ratcliffe S, Ravitsky V, Sali A, Schulz W, Ideker T | bioRxiv : the preprint server for biology | 38826258 | bioRxiv | 2024 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/38826258 |
| Not the Models You Are Looking For: Traditional ML Outperforms LLMs in Clinical Prediction Tasks. | Brown KE, Yan C, Li Z, Zhang X, Collins BX, Chen Y, Clayton EW, Kantarcioglu M, Vorobeychik Y, Malin BA | medRxiv : the preprint server for health sciences | 39677419 | medRxiv | 2024 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/39677419 |
| False-positive tolerant model misconduct mitigation in distributed federated learning on electronic health record data across clinical institutions. | Edelson M, Pham A, Kuo TT | Scientific reports | 40603924 | Sci Rep | 2025 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/40603924 |
| Enhancement of Fairness in AI for Chest X-ray Classification. | Jackson NJ, Yan C, Malin BA | AMIA ... Annual Symposium proceedings. AMIA Symposium | 40417510 | AMIA Annu Symp Proc | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/40417510 |
| Federated Multiple Imputation for Variables that Are Missing Not At Random in Distributed Electronic Health Records. | Lian Y, Jiang X, Long Q | AMIA ... Annual Symposium proceedings. AMIA Symposium | 40417515 | AMIA Annu Symp Proc | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/40417515 |
| Not Fully Synthetic: LLM-based Hybrid Approaches Towards Privacy-Preserving Clinical Note Sharing. | Rahman Sarkar A, Chuang YS, Jiang X, Mohammed N | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science | 40502247 | AMIA Jt Summits Transl Sci Proc | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40502247 |
| De-identification is not enough: a comparison between de-identified and synthetic clinical notes. | Sarkar AR, Chuang YS, Mohammed N, Jiang X | Scientific reports | 39613846 | Sci Rep | 2024 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/39613846 |
| Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial Networks. | Li B, Shi X, Gao H, Jiang X, Zhang K, Harmanci AO, Malin B | bioRxiv : the preprint server for biology | 37609241 | bioRxiv | 2023 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/37609241 |
| Guiding Principles to Address the Impact of Algorithm Bias on Racial and Ethnic Disparities in Health and Health Care. | Chin MH, Afsar-Manesh N, Bierman AS, Chang C, Colón-Rodríguez CJ, Dullabh P, Duran DG, Fair M, Hernandez-Boussard T, Hightower M, Jain A, Jordan WB, Konya S, Moore RH, Moore TT, Rodriguez R, Shaheen G, Snyder LP, Srinivasan M, Umscheid CA, Ohno-Machado L | JAMA network open | 38100101 | JAMA Netw Open | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/38100101 |
| An interpretable framework to identify responsive subgroups from clinical trials regarding treatment effects: Application to treatment of intracerebral hemorrhage. | Ling Y, Tariq MB, Tang K, Aronowski J, Fann Y, Savitz SI, Jiang X, Kim Y | PLOS digital health | 38713647 | PLOS Digit Health | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38713647 |
| Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review. | Lacson R, Yu Y, Kuo TT, Ohno-Machado L | Journal of the American Medical Informatics Association : JAMIA | 38726710 | J Am Med Inform Assoc | 2024 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/38726710 |
| Quorum-based model learning on a blockchain hierarchical clinical research network using smart contracts. | Kuo TT, Pham A | International journal of medical informatics | 36402113 | Int J Med Inform | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36402113 |
| Using Natural Language Processing to Predict Fatal Drug Overdose From Autopsy Narrative Text: Algorithm Development and Validation Study. | Tang LA, Korona-Bailey J, Zaras D, Roberts A, Mukhopadhyay S, Espy S, Walsh CG | JMIR public health and surveillance | 37204824 | JMIR Public Health Surveill | 2023 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/37204824 |
| Rural Medical Centers Struggle to Produce Well-Calibrated Clinical Prediction Models: Data Augmentation Can Help. | Brown KE, Malin BA, Davis SE | medRxiv : the preprint server for health sciences | 40585177 | medRxiv | 2025 Jun 17 | https://www.ncbi.nlm.nih.gov/pubmed/40585177 |
| Enhancing fairness in disease prediction by optimizing multiple domain adversarial networks. | Li B, Jiang X, Zhang K, Harmanci AO, Malin B, Gao H, Shi X, Alzheimer’s Disease Neuroimaging Initiative | PLOS digital health | 40445951 | PLOS Digit Health | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/40445951 |
| Computational strategic recruitment for representation and coverage studied in the All of Us Research Program. | Borza VA, Chen Q, Clayton EW, Kantarcioglu M, Sulieman L, Vorobeychik Y, Malin BA | NPJ digital medicine | 40610586 | NPJ Digit Med | 2025 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/40610586 |
| Predicting multiple sclerosis severity with multimodal deep neural networks. | Zhang K, Lincoln JA, Jiang X, Bernstam EV, Shams S | BMC medical informatics and decision making | 37946182 | BMC Med Inform Decis Mak | 2023 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/37946182 |
| Ensuring Trust in Genomics Research. | Ayday E, Vaidya J, Jiang X, Telenti A | ... IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications : (TPS-ISA ...). IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications | 38562180 | IEEE Int Conf Trust Priv Secur Intell Syst Appl | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/38562180 |
| Risk Model-Guided Clinical Decision Support for Suicide Screening: A Randomized Clinical Trial. | Walsh CG, Ripperger MA, Novak L, Reale C, Anders S, Spann A, Kolli J, Robinson K, Chen Q, Isaacs D, Acosta LMY, Phibbs F, Fielstein E, Wilimitis D, Musacchio Schafer K, Hilton R, Albert D, Shelton J, Stroh J, Stead WW, Johnson KB | JAMA network open | 39752160 | JAMA Netw Open | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39752160 |
| Digital Information Ecosystems in Modern Care Coordination and Patient Care Pathways and the Challenges and Opportunities for AI Solutions. | Chen Y, Lehmann CU, Malin B | Journal of medical Internet research | 39622048 | J Med Internet Res | 2024 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/39622048 |
| Optimized Risk Score to Predict Mortality in Patients With Cardiogenic Shock in the Cardiac Intensive Care Unit. | Yamga E, Mantena S, Rosen D, Bucholz EM, Yeh RW, Celi LA, Ustun B, Butala NM | Journal of the American Heart Association | 37345819 | J Am Heart Assoc | 2023 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/37345819 |
| Fact Check: Assessing the Response of ChatGPT to Alzheimer's Disease Statements with Varying Degrees of Misinformation. | Huang SS, Song Q, Beiting KJ, Duggan MC, Hines K, Murff H, Leung V, Powers J, Harvey TS, Malin B, Yin Z | medRxiv : the preprint server for health sciences | 37745352 | medRxiv | 2023 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/37745352 |
| Split Learning for Distributed Collaborative Training of Deep Learning Models in Health Informatics. | Li Z, Yan C, Zhang X, Gharibi G, Yin Z, Jiang X, Malin BA | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222326 | AMIA Annu Symp Proc | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38222326 |
| Adaptive Recruitment Resource Allocation to Improve Cohort Representativeness in Participatory Biomedical Datasets. | Borza VA, Estornell A, Clayton EW, Ho CJ, Rothman RL, Vorobeychik Y, Malin BA | AMIA ... Annual Symposium proceedings. AMIA Symposium | 40417546 | AMIA Annu Symp Proc | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/40417546 |
| Robust privacy amidst innovation with large language models through a critical assessment of the risks. | Chuang YS, Sarkar AR, Hsu YC, Mohammed N, Jiang X | Journal of the American Medical Informatics Association : JAMIA | 40112189 | J Am Med Inform Assoc | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/40112189 |
| Longitudinal Analysis of Electronic Health Records Reveals Medical Conditions Associated with Subsequent Alzheimer's Disease Development. | Zhong X, Jia G, Yin Z, Cheng K, Rzhetsky A, Li B, Cox NJ | medRxiv : the preprint server for health sciences | 40196258 | medRxiv | 2025 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/40196258 |
| Distributed cross-learning for equitable federated models - privacy-preserving prediction on data from five California hospitals. | Kuo TT, Gabriel RA, Koola J, Schooley RT, Ohno-Machado L | Nature communications | 39910076 | Nat Commun | 2025 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/39910076 |
| Human-Centered Design to Address Biases in Artificial Intelligence. | Chen Y, Clayton EW, Novak LL, Anders S, Malin B | Journal of medical Internet research | 36961506 | J Med Internet Res | 2023 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/36961506 |
| Auditor Models to Suppress Poor AI Predictions Can Improve Human-AI Collaborative Performance. | Brown KE, Wrenn JO, Jackson NJ, Cauley MR, Collins B, Novak LL, Malin BA, Ancker JS | medRxiv : the preprint server for health sciences | 40666330 | medRxiv | 2025 Jun 24 | https://www.ncbi.nlm.nih.gov/pubmed/40666330 |
| Biomedical data repositories require governance for artificial intelligence/machine learning applications at every step. | Clayton EW, Rose S, Nebecker C, Novak L, Bensoussan Y, Chen Y, Collins BX, Cordes A, Evans BJ, Ferryman KS, Hurst S, Jiang X, Lee AY, McWeeney S, Parker J, Bélisle-Pipon JC, Rosenthal E, Yin Z, Yracheta J, Malin BA, Bridge2AI Ethics Working Group | JAMIA open | 41334246 | JAMIA Open | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41334246 |
| Sensitive Data Detection with High-Throughput Machine Learning Models in Electrical Health Records. | Zhang K, Jiang X | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222389 | AMIA Annu Symp Proc | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38222389 |
| Large Language Models for Healthcare Data Augmentation: An Example on Patient-Trial Matching. | Yuan J, Tang R, Jiang X, Hu X | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222339 | AMIA Annu Symp Proc | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38222339 |
| A Multifaceted benchmarking of synthetic electronic health record generation models. | Yan C, Yan Y, Wan Z, Zhang Z, Omberg L, Guinney J, Mooney SD, Malin BA | Nature communications | 36494374 | Nat Commun | 2022 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/36494374 |
| Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. | Kuo TT, Pham A, Edelson ME, Kim J, Chan J, Gupta Y, Ohno-Machado L, R2D2 Consortium | Journal of the American Medical Informatics Association : JAMIA | 36916740 | J Am Med Inform Assoc | 2023 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/36916740 |
| A comparative atlas of single-cell chromatin accessibility in the human brain. | Li YE, Preissl S, Miller M, Johnson ND, Wang Z, Jiao H, Zhu C, Wang Z, Xie Y, Poirion O, Kern C, Pinto-Duarte A, Tian W, Siletti K, Emerson N, Osteen J, Lucero J, Lin L, Yang Q, Zhu Q, Zemke N, Espinoza S, Yanny AM, Nyhus J, Dee N, Casper T, Shapovalova N, Hirschstein D, Hodge RD, Linnarsson S, Bakken T, Levi B, Keene CD, Shang J, Lein E, Wang A, Behrens MM, Ecker JR, Ren B | Science (New York, N.Y.) | 37824643 | Science | 2023 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/37824643 |
| Guidance for unbiased predictive information for healthcare decision-making and equity (GUIDE): considerations when race may be a prognostic factor. | Ladin K, Cuddeback J, Duru OK, Goel S, Harvey W, Park JG, Paulus JK, Sackey J, Sharp R, Steyerberg E, Ustun B, van Klaveren D, Weingart SN, Kent DM | NPJ digital medicine | 39427028 | NPJ Digit Med | 2024 Oct 19 | https://www.ncbi.nlm.nih.gov/pubmed/39427028 |
| Factors Influencing Informed Consent Preferences in Digital Health Research: Survey Study of Prospective Participants. | McInnis BJ, Pindus R, Kareem D, Vital DG, Hekler EB, Nebeker C | Journal of medical Internet research | 39847412 | J Med Internet Res | 2025 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/39847412 |
| Using dataflow diagrams to support research informed consent data management communications: participant perspectives. | McInnis BJ, Pindus R, Kareem DH, Cakici J, Vital DG, Hekler E, Nebeker C | Journal of the American Medical Informatics Association : JAMIA | 39903169 | J Am Med Inform Assoc | 2025 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/39903169 |
| Large language models are less effective at clinical prediction tasks than locally trained machine learning models. | Brown KE, Yan C, Li Z, Zhang X, Collins BX, Chen Y, Clayton EW, Kantarcioglu M, Vorobeychik Y, Malin BA | Journal of the American Medical Informatics Association : JAMIA | 40056436 | J Am Med Inform Assoc | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/40056436 |
| FERI: A Multitask-based Fairness Achieving Algorithm with Applications to Fair Organ Transplantation. | Li C, Lai D, Jiang X, Zhang K | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science | 38827050 | AMIA Jt Summits Transl Sci Proc | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38827050 |
| SPeC: A Soft Prompt-Based Calibration on Performance Variability of Large Language Model in Clinical Notes Summarization. | Chuang YN, Tang R, Jiang X, Hu X | Journal of biomedical informatics | 38325698 | J Biomed Inform | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38325698 |
| Deep learning to predict rapid progression of Alzheimer's disease from pooled clinical trials: A retrospective study. | Ma X, Shyer M, Harris K, Wang D, Hsu YC, Farrell C, Goodwin N, Anjum S, Bukhbinder AS, Dean S, Khan T, Hunter D, Schulz PE, Jiang X, Kim Y | PLOS digital health | 38598464 | PLOS Digit Health | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38598464 |
| Longitudinal analysis of electronic health records reveals medical conditions associated with subsequent Alzheimer's disease development. | Zhong X, Jia G, Yin Z, Chen R, Cheng K, Rzhetsky A, Li B, Cox NJ | Alzheimer's research & therapy | 41466307 | Alzheimers Res Ther | 2025 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/41466307 |
| Synoptic reporting by summarizing cancer pathology reports using large language models. | Rajaganapathy S, Chowdhury S, Li X, Buchner V, He Z, Zhang R, Jiang X, Yang P, Cerhan JR, Zong N | npj health systems | 41623418 | Npj Health Syst | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/41623418 |
| Commentary: Implications of causality in artificial intelligence. Why Causal AI is easier said than done. | Bélisle-Pipon JC | Frontiers in artificial intelligence | 39911917 | Front Artif Intell | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39911917 |
| How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities. | Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR | ArXiv | 39398201 | ArXiv | 2024 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/39398201 |
| Putting proteins in context. | Hu M, Ideker T | Cell systems | 39418999 | Cell Syst | 2024 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/39418999 |
| Discovery and significance of protein-protein interactions in health and disease. | Greenblatt JF, Alberts BM, Krogan NJ | Cell | 39547210 | Cell | 2024 Nov 14 | https://www.ncbi.nlm.nih.gov/pubmed/39547210 |
| How to build the virtual cell with artificial intelligence: Priorities and opportunities. | Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR | Cell | 39672099 | Cell | 2024 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/39672099 |
| RNA editing: Expanding the potential of RNA therapeutics. | Booth BJ, Nourreddine S, Katrekar D, Savva Y, Bose D, Long TJ, Huss DJ, Mali P | Molecular therapy : the journal of the American Society of Gene Therapy | 36620962 | Mol Ther | 2023 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/36620962 |
| Evaluation of large language models for discovery of gene set function. | Hu M, Alkhairy S, Lee I, Pillich RT, Fong D, Smith K, Bachelder R, Ideker T, Pratt D | ArXiv | 37731657 | ArXiv | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/37731657 |
| A multi-scale map of protein assemblies in the DNA damage response. | Kratz A, Kim M, Kelly MR, Zheng F, Koczor CA, Li J, Ono K, Qin Y, Churas C, Chen J, Pillich RT, Park J, Modak M, Collier R, Licon K, Pratt D, Sobol RW, Krogan NJ, Ideker T | Cell systems | 37220749 | Cell Syst | 2023 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/37220749 |
| A Roadmap for the Future of Systems Biology in Cancer Research. | Wiley HS, Lopez CF, Rodin AS, Rockne RC, Yankeelov TE, Sauro HM, Hassan G, Prabhakaran S, Demir E, Hu M, Fuxman Bass J, Luddy KA, Newman H, Mochel JP, Costello JC, Xing J, Afify SM, Acar A, Haden Gephart M, Feng S, Banks O, Banerjee J, Clayton A, Hill DE, Sweis RF, Umeh-Garcia MC, Su Y, Meyer AS | Cancer research | 41091803 | Cancer Res | 2025 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/41091803 |
| Multi-modal contrastive learning of subcellular organization using DICE. | Nasser R, Schaffer LV, Ideker T, Sharan R | Bioinformatics (Oxford, England) | 39230695 | Bioinformatics | 2024 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/39230695 |
| Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation. | Ford K, Munson BP, Fong SH, Panwala R, Chu WK, Rainaldi J, Plongthongkum N, Arunachalam V, Kostrowicki J, Meluzzi D, Kreisberg JF, Jensen-Pergakes K, VanArsdale T, Paul T, Tamayo P, Zhang K, Bienkowska J, Mali P, Ideker T | Scientific reports | 37169829 | Sci Rep | 2023 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/37169829 |
| Cell Mapping Toolkit: an end-to-end pipeline for mapping subcellular organization. | Lenkiewicz J, Churas C, Hu M, Qian G, Jain M, Levinson MA, Al Manir S, Qin Y, Fong D, Ono K, Chen J, Gao C, Pratt D, Parker JA, Clark T, Ideker T, Schaffer LV | Bioinformatics (Oxford, England) | 40489639 | Bioinformatics | 2025 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/40489639 |
| Individuals and (Synthetic) Data Points: Using Value-Sensitive Design to Foster Ethical Deliberations on Epistemic Transitions. | Bélisle-Pipon JC, Ravitsky V, Bridge2AI-Voice Consortium, Bensoussan Y | The American journal of bioethics : AJOB | 37647464 | Am J Bioeth | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37647464 |
| Mondrian Abstraction and Language Model Embeddings for Differential Pathway Analysis. | Al Abir F, Chen JY | bioRxiv : the preprint server for biology | 38659966 | bioRxiv | 2024 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/38659966 |
| SubCell: Proteome-aware vision foundation models for microscopy capture single-cell biology. | Gupta A, Wefers Z, Kahnert K, Hansen JN, Misra MK, Leineweber W, Cesnik A, Lu D, Axelsson U, Ballllosera F, Altman RB, Karaletsos T, Lundberg E | bioRxiv : the preprint server for biology | 41278937 | bioRxiv | 2025 Oct 30 | https://www.ncbi.nlm.nih.gov/pubmed/41278937 |
| Charting and probing the activity of ADARs in human development and cell-fate specification. | Dailamy A, Lyu W, Nourreddine S, Tong M, Rainaldi J, McDonald D, Panwala R, Muotri A, Breen MS, Zhang K, Mali P | Nature communications | 39537590 | Nat Commun | 2024 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/39537590 |
| Robust genome and cell engineering via in vitro and in situ circularized RNAs. | Tong M, Palmer N, Dailamy A, Kumar A, Khaliq H, Han S, Finburgh E, Wing M, Hong C, Xiang Y, Miyasaki K, Portell A, Rainaldi J, Suhardjo A, Nourreddine S, Chew WL, Kwon EJ, Mali P | Nature biomedical engineering | 39187662 | Nat Biomed Eng | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39187662 |
| Multimodal cell maps as a foundation for structural and functional genomics. | Schaffer LV, Hu M, Qian G, Moon KM, Pal A, Soni N, Latham AP, Pontano Vaites L, Tsai D, Mattson NM, Licon K, Bachelder R, Cesnik A, Gaur I, Le T, Leineweber W, Palar A, Pulido E, Qin Y, Zhao X, Churas C, Lenkiewicz J, Chen J, Ono K, Pratt D, Zage P, Echeverria I, Sali A, Harper JW, Gygi SP, Foster LJ, Huttlin EL, Lundberg E, Ideker T | Nature | 40205054 | Nature | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40205054 |
| The FAIRSCAPE AI-readiness Framework for Biomedical Research. | Manir SA, Levinson MA, Niestroy J, Churas C, Sheffield NC, Sullivan B, Fairchild K, Munoz-Torres M, Ratcliffe SJ, Parker JA, Ideker T, Clark T | bioRxiv : the preprint server for biology | 39763764 | bioRxiv | 2026 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/39763764 |
| Quantum Machine Learning and Data Re-Uploading: Evaluation on Benchmark and Laboratory Medicine Data Sets. | Durant TJS, Lee SJ, Dudgeon SN, Knight E, Nelson B, Young HP, Ohno-Machado L, Schulz WL | Clinical chemistry | 41728802 | Clin Chem | 2026 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/41728802 |
| Systematic discovery of transcription factors that improve hPSC-derived cardiomyocyte maturation via temporal analysis of bioengineered cardiac tissues. | Kumar A, He S, Mali P | APL bioengineering | 37252678 | APL Bioeng | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37252678 |
| Evaluation of large language models for discovery of gene set function. | Hu M, Alkhairy S, Lee I, Pillich RT, Bachelder R, Ideker T, Pratt D | Research square | 37790547 | Res Sq | 2023 Sep 18 | https://www.ncbi.nlm.nih.gov/pubmed/37790547 |
| A primer for quantum computing and its applications to healthcare and biomedical research. | Durant TJS, Knight E, Nelson B, Dudgeon S, Lee SJ, Walliman D, Young HP, Ohno-Machado L, Schulz WL | Journal of the American Medical Informatics Association : JAMIA | 38934288 | J Am Med Inform Assoc | 2024 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/38934288 |
| Interface-guided phenotyping of coding variants in the transcription factor RUNX1. | Ozturk K, Panwala R, Sheen J, Ford K, Jayne N, Portell A, Zhang DE, Hutter S, Haferlach T, Ideker T, Mali P, Carter H | Cell reports | 38968069 | Cell Rep | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/38968069 |
| Beyond Consent: The MAMLS in the Room. | Rhim J, Gallois H, Ravitsky V, Bélisle-Pipon JC | The American journal of bioethics : AJOB | 39283388 | Am J Bioeth | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39283388 |
| Early AI Lifecycle Co-Reasoning: Ethics Through Integrated and Diverse Team Science. | Pacia DM, Ravitsky V, Hansen JN, Lundberg E, Schulz W, Bélisle-Pipon JC | The American journal of bioethics : AJOB | 39226006 | Am J Bioeth | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/39226006 |
| Informatics at the Frontier of Cancer Research. | Noller K, Botsis T, Camara PG, Ciotti L, Cooper LAD, Goecks J, Griffith M, Haas BJ, Ideker T, Karchin R, Kontos D, Lai J, Marcus D, Meyer CA, Naegle K, Pati S, Peters B, Pratt D, Raphael BJ, Reich M, Savova GK, Wright C, Fertig EJ, Bakas S | Cancer research | 40600473 | Cancer Res | 2025 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/40600473 |
| Cell shapes decode molecular phenotypes in image-based spatial proteomics. | Le T, Leineweber WD, Viana MP, Cesnik A, Hansen JN, Ouyang W, Rafelski SM, Lundberg E | bioRxiv : the preprint server for biology | 40463127 | bioRxiv | 2025 May 16 | https://www.ncbi.nlm.nih.gov/pubmed/40463127 |
| A genotype-to-drug diffusion model for generation of tailored anti-cancer small molecules. | Kim H, Bae B, Park M, Shin Y, Ideker T, Nam H | Nature communications | 40593549 | Nat Commun | 2025 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/40593549 |
| A genome-scale CRISPRi perturbation atlas of human induced pluripotent stem cells. | Nourreddine S, Doctor Y, Dailamy A, Lee YH, Hansen JN, Chinn R, Forget A, Polacco B, Muralidharan M, Sigaeva A, Sunder S, Pan E, Gao J, Chen JY, Clark T, Parker J, Obernier K, Metallo C, Ideker T, Lundberg E, Krogan N, Mali P | Nature biotechnology | 42386990 | Nat Biotechnol | 2026 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/42386990 |
| Generative AI, Specific Moral Values: A Closer Look at ChatGPT's New Ethical Implications for Medical AI. | Victor G, Bélisle-Pipon JC, Ravitsky V | The American journal of bioethics : AJOB | 37812098 | Am J Bioeth | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37812098 |
| Investigating the Influence of Artificial Intelligence on Adolescent Health: An Urgent Call to Action. | Brisson J, Bélisle-Pipon JC, Ravitsky V | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 37716717 | J Adolesc Health | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37716717 |
| Evaluation of large language models for discovery of gene set function. | Hu M, Alkhairy S, Lee I, Pillich RT, Fong D, Smith K, Bachelder R, Ideker T, Pratt D | Nature methods | 39609565 | Nat Methods | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39609565 |
| A Manual for Genome and Transcriptome Engineering. | Doctor Y, Sanghvi M, Mali P | IEEE reviews in biomedical engineering | 39514364 | IEEE Rev Biomed Eng | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/39514364 |
| The Hallmarks of Predictive Oncology. | Singhal A, Zhao X, Wall P, So E, Calderini G, Partin A, Koussa N, Vasanthakumari P, Narykov O, Zhu Y, Jones SE, Abbas-Aghababazadeh F, Kadambat Nair S, Bélisle-Pipon JC, Jayaram A, Parker BA, Yeung KT, Griffiths JI, Weil R, Nath A, Haibe-Kains B, Ideker T | Cancer discovery | 39760657 | Cancer Discov | 2025 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/39760657 |
| A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS. | Nourreddine S, Doctor Y, Dailamy A, Forget A, Lee YH, Chinn B, Khaliq H, Polacco B, Muralidharan M, Pan E, Zhang Y, Sigaeva A, Hansen JN, Gao J, Parker JA, Obernier K, Clark T, Chen JY, Metallo C, Lundberg E, Ideker T, Krogan N, Mali P | bioRxiv : the preprint server for biology | 39574586 | bioRxiv | 2024 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/39574586 |
| De novo generation of multi-target compounds using deep generative chemistry. | Munson BP, Chen M, Bogosian A, Kreisberg JF, Licon K, Abagyan R, Kuenzi BM, Ideker T | Nature communications | 38710699 | Nat Commun | 2024 May 6 | https://www.ncbi.nlm.nih.gov/pubmed/38710699 |
| PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis. | Huang F, Welner RS, Chen JY, Yue Z | Frontiers in bioinformatics | 38690527 | Front Bioinform | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38690527 |
| Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes. | Cesnik A, Schaffer LV, Gaur I, Jain M, Ideker T, Lundberg E | Annual review of biomedical data science | 38748859 | Annu Rev Biomed Data Sci | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38748859 |
| TabGraphSyn: Graph-Guided Latent Diffusion for High-Fidelity and Privacy-Conscious Clinical Data Generation. | Wu Z, Chen H, Chen JY | medRxiv : the preprint server for health sciences | 41503456 | medRxiv | 2025 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/41503456 |
| Cell shapes decode molecular phenotypes in image-based spatial proteomics. | Le T, Leineweber WD, Viana MP, Cesnik A, Hansen JN, Ouyang W, Rafelski SM, Lundberg E | Cell systems | 42013840 | Cell Syst | 2026 Jun 17 | https://www.ncbi.nlm.nih.gov/pubmed/42013840 |
| Eating and swallowing care disparities in persons with dementia: A conceptual framework. | Loy RD, Rogus-Pulia N, Ketchum F, Troche M, Rameau A, Jones HN, Riquelme L, Gilmore-Bykovskyi A, Shah MN, Kind A | Alzheimer's & dementia : the journal of the Alzheimer's Association | 40008923 | Alzheimers Dement | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40008923 |
| Voice Meets Swallowing: A Scoping Review of Therapeutic Connections. | Castillo-Allendes A, Searl J, Vergara J, Ballentine N, Ebdah S, Rameau A, Hunter EJ | American journal of speech-language pathology | 39772835 | Am J Speech Lang Pathol | 2025 Mar 10 | https://www.ncbi.nlm.nih.gov/pubmed/39772835 |
| An Evaluation of Current Trends in AI-Generated Text in Otolaryngology Publications. | Kutler RB, Setzen SA, Tsai S, Rameau A | The Laryngoscope | 40277459 | Laryngoscope | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40277459 |
| The Bridge2AI-voice application: initial feasibility study of voice data acquisition through mobile health. | Moothedan E, Boyer M, Watts S, Abdel-Aty Y, Ghosh S, Rameau A, Sigaras A, Elemento O, Bridge2AI-Voice Consortium, Bensoussan Y | Frontiers in digital health | 40302934 | Front Digit Health | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40302934 |
| Transformers for rapid detection of airway stenosis and stridor. | Anibal J, Doctor R, Boyer M, Newberry K, De Santiago I, Awan S, Abdel-Aty Y, Dion G, Daoud V, Huth H, Watts S, Wood BJ, Clifton D, Gelbard A, Powell M, Toghranegar J, Bridge2AI Voice Consortium, Bensoussan Y | Scientific reports | 40316652 | Sci Rep | 2025 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/40316652 |
| Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. | Low DM, Rao V, Randolph G, Song PC, Ghosh SS | medRxiv : the preprint server for health sciences | 33501466 | medRxiv | 2024 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/33501466 |
| Cough Sounds in Screening and Diagnostics: A Scoping Review. | Hegde S, Sreeram S, Alter IL, Shor C, Valdez TA, Meister KD, Rameau A | The Laryngoscope | 37672667 | Laryngoscope | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37672667 |
| Virtual Reality for Pain Management During High-Resolution Manometry: A Randomized Clinical Trial. | Palte I, Stewart S, Rives H, Curtis JA, Enver N, Tritter A, Andreadis K, Mocchetti V, Schnoll-Sussman F, Soumekh A, Zarnegar R, Katz P, Rameau A | The Laryngoscope | 37497865 | Laryngoscope | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37497865 |
| Access to Otolaryngologic Telemedicine Care Across the COVID-19 Pandemic at an Urban Tertiary Hospital System. | Srinivasan Y, Andreadis K, Ballakur SS, Rameau A | Ear, nose, & throat journal | 38488168 | Ear Nose Throat J | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38488168 |
| The Readability of Patient-Facing Social Media Posts on Common Otolaryngologic Diagnoses. | Morse E, Odigie E, Gillespie H, Rameau A | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38018504 | Otolaryngol Head Neck Surg | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38018504 |
| Epistemological Challenges of Artificial Intelligence Clinical Decision Support Tools in Otolaryngology: The Black Box Problem. | Babu CS, Holsinger FC, Zuchowski L, Ratti E, Rameau A | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 37344955 | Otolaryngol Head Neck Surg | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37344955 |
| "Low Risk, High Happiness": A Review of Openly Declared Ethical and Legal Practices in Voice Biomarker Health-Tech Start-Ups. | Gallois H, Ivkovic L, Evangelista E, Bensoussan Y, B2AI-Voice Consortium, Bélisle-Pipon JC | Health care analysis : HCA : journal of health philosophy and policy | 41091343 | Health Care Anal | 2025 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/41091343 |
| Validity of Acoustic Measures Obtained Using Various Recording Methods Including Smartphones With and Without Headset Microphones. | Awan SN, Bahr R, Watts S, Boyer M, Budinsky R, Bridge2AI Voice Consortium, Bensoussan Y | Journal of speech, language, and hearing research : JSLHR | 38749007 | J Speech Lang Hear Res | 2024 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/38749007 |
| In Response to Concurrent Validity of the IOPI and Tongueometer Orofacial Strength Measurement Devices. | Curtis JA, Mocchetti V, Rameau A | The Laryngoscope | 37905777 | Laryngoscope | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37905777 |
| Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews and meta-analyses. | Zavalis EA, Rameau A, Saraswathula A, Vist J, Schuit E, Ioannidis JP | BMJ open | 38195174 | BMJ Open | 2024 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/38195174 |
| Complete Resolution of Persistent Globus Pharyngeus Using Cervical Plexus Block: A Case Report. | Biskaduros A, Jotwani R, Rameau A | The Laryngoscope | 41230659 | Laryngoscope | 2026 Apr | https://www.ncbi.nlm.nih.gov/pubmed/41230659 |
| ADGR: Admixture-Informed Differential Gene Regulation. | Lee IH, Kong SW | Genes | 36672888 | Genes (Basel) | 2023 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/36672888 |
| Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews. | Zavalis EA, Rameau A, Saraswathula A, Vist J, Schuit E, Ioannidis JPA | medRxiv : the preprint server for health sciences | 36778340 | medRxiv | 2023 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/36778340 |
| Validation of a 3D-Printed Percutaneous Injection Laryngoplasty Simulator: A Randomized Controlled Trial. | Kostas JC, Lee AS, Arunkumar A, Han C, Lee M, Goel AN, Alrassi J, Crosby T, Clark CM, Amin M, Abu-Ghanem S, Kirke D, Rameau A | The Laryngoscope | 37466294 | Laryngoscope | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37466294 |
| Outcomes of Gender-Affirming Voice and Communication Modification Training for Non-binary Individuals: A Case Series. | Chadwick KA, Liao D, Alter IL, Coleman R, Andreadis K, Riekki R, Waldman J, Rives H, Pitti M, Rameau A | Journal of voice : official journal of the Voice Foundation | 37673753 | J Voice | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37673753 |
| Female Surgical Ergonomics in Otolaryngology. | Kutler RB, Rameau A | Operative techniques in otolaryngology--head and neck surgery | 40861043 | Oper Tech Otolayngol Head Neck Surg | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40861043 |
| Artificial Intelligence Governance and Otolaryngology-Head and Neck Surgery. | Nwosu OI, Crowson MG, Rameau A | The Laryngoscope | 37658749 | Laryngoscope | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37658749 |
| Voice Disorders and Hearing Loss May Be Additive Risk Factors for Depression in a National Cohort. | Rameau A, Tucker LH, Denham MW, Kang YJ, Choi N, Lachs M, Rosen TE, Stewart M, Czaja S, Golub JS | The Laryngoscope | 38804637 | Laryngoscope | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38804637 |
| Voice as a Biomarker in Health-Tech: Mapping the Evolving Landscape of Voice Biomarkers in the Start-Up World. | Evangelista EG, Bélisle-Pipon JC, Naunheim MR, Powell M, Gallois H, Bridge2AI‐Voice Consortium, Bensoussan Y | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38822764 | Otolaryngol Head Neck Surg | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38822764 |
| Feasibility of Awake In-Office Transnasal Double Balloon Dilation of the Pharyngoesophageal Segment. | Clark CM, Doruk C, Mocchetti V, Rameau A | The Laryngoscope | 41518064 | Laryngoscope | 2026 May | https://www.ncbi.nlm.nih.gov/pubmed/41518064 |
| Exploring Real-Time Tracking of Vocal Fold Polyps in Video-Stroboscopy Using Deep Learning. | Kaza S, Mohanty AS, Serpedin A, Yau J, Kim YE, Kutler RB, Elemento O, Sulica L, Khosravi P, Rameau A | The Laryngoscope | 41623203 | Laryngoscope | 2026 Jun | https://www.ncbi.nlm.nih.gov/pubmed/41623203 |
| Assessing Otolaryngology Capacity in Sub-Saharan Africa: Flexible Laryngoscope Availability and Use. | He L, Biskaduros A, Clark C, Ndadi J, Nkya A, Muganda E, Zimani P, Chidziva C, Rameau A | Journal of voice : official journal of the Voice Foundation | 40803928 | J Voice | 2025 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/40803928 |
| New developments in the application of artificial intelligence to laryngology. | Torborg SR, Kim AYE, Rameau A | Current opinion in otolaryngology & head and neck surgery | 39146248 | Curr Opin Otolaryngol Head Neck Surg | 2024 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/39146248 |
| Development of Machine Learning Copilot to Assist Novices in Learning Flexible Laryngoscopy. | Miller ME, Witte D, Lina I, Walsh J, Rameau A, Bhatti NI | The Laryngoscope | 39363661 | Laryngoscope | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39363661 |
| American Academy of Otolaryngology-Head and Neck Surgery (AAO-HNS) Report on Artificial Intelligence. | Ayoub NF, Rameau A, Brenner MJ, Bur AM, Ator GA, Briggs SE, Takashima M, Stankovic KM, AAO‐HNS Artificial Intelligence Task Force | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 39666770 | Otolaryngol Head Neck Surg | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39666770 |
| Developing a mobile application for gender-affirming voice training: A community-engaged approach. | Alter IL, Chadwick KA, Andreadis K, Coleman R, Pitti M, Ezell JM, Rameau A | Laryngoscope investigative otolaryngology | 39679168 | Laryngoscope Investig Otolaryngol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39679168 |
| Association between Neuroligin-1 polymorphism and plasma glutamine levels in individuals with autism spectrum disorder. | Lee IH, Walker DI, Lin Y, Smith MR, Mandl KD, Jones DP, Kong SW | EBioMedicine | 37544204 | EBioMedicine | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37544204 |
| Concurrent Validity of a Low-Cost Manometer for Objective Assessments of Respiratory Muscle Strength. | Curtis JA, Mocchetti V, Rameau A | The Laryngoscope | 37837395 | Laryngoscope | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37837395 |
| Female Surgical Ergonomics in Otolaryngology: A National Survey Study. | Morse E, Tai K, Harpel L, Born H, Krishna P, Rameau A | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 37890071 | Otolaryngol Head Neck Surg | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37890071 |
| Correlations Between Anxiety and/or Depression Diagnoses and Dysphagia Severity. | Doruk C, Mocchetti V, Rives H, Christos P, Rameau A | The Laryngoscope | 37942834 | Laryngoscope | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/37942834 |
| Association of Dysphonia in Patients With Dysphagia in the United States: A National Database Study. | He L, Zhao R, Curtis J, Graham-Tutt C, Rameau A | The Laryngoscope | 40317750 | Laryngoscope | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40317750 |
| The San Diego Consensus for Laryngopharyngeal Symptoms and Laryngopharyngeal Reflux Disease. | Yadlapati R, Weissbrod P, Walsh E, Carroll TL, Chan WW, Gartner-Schmidt J, Guadagnoli L, Jette M, Myers JC, O'Rourke A, Sweis R, Wu J, Barkmeier-Kraemer JM, Cates D, Chen CL, Coss-Adame E, Dion G, Francis D, Kaneko M, Lechien JR, Misono S, Rameau A, Roman S, Vertigan A, Xiao Y, Zerbib F, Greytak M, Pandolfino JE, Gyawali CP | The American journal of gastroenterology | 40197644 | Am J Gastroenterol | 2026 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/40197644 |
| A Deep-Learning Model for Multi-class Audio Classification of Vocal Fold Pathologies in Office Stroboscopy. | Kim YE, Dobko M, Li H, Shao T, Periyakoil P, Tipton C, Colasacco C, Serpedin A, Elemento O, Sabuncu M, Pitman M, Sulica L, Rameau A | The Laryngoscope | 39907244 | Laryngoscope | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/39907244 |
| Patient-Centered Equitable and Safe Artificial Intelligence in Otolaryngology-Head and Neck Surgery. | Tai K, Zhao R, Rameau A | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38943446 | Otolaryngol Head Neck Surg | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/38943446 |
| Female Surgical Ergonomics in Otolaryngology: A Qualitative Study. | Morse E, Harpel L, Born H, Rameau A | The Laryngoscope | 37096670 | Laryngoscope | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37096670 |
| Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. | Low DM, Rao V, Randolph G, Song PC, Ghosh SS | PLOS digital health | 38814939 | PLOS Digit Health | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38814939 |
| Validation of a Low-Cost Method for Recording and Supervising Otolaryngology Trainee Endoscopies. | Lee M, Yu M, Morse E, Rameau A | Journal of voice : official journal of the Voice Foundation | 39609221 | J Voice | 2024 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/39609221 |
| Quantification of Automatic Speech Recognition System Performance on d/Deaf and Hard of Hearing Speech. | Zhao R, Choi ASG, Koenecke A, Rameau A | The Laryngoscope | 39157956 | Laryngoscope | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39157956 |
| An Intelligent Infrastructure as a Foundation for Modern Science. | Ghosh S | ArXiv | 40832056 | ArXiv | 2025 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/40832056 |
| Transitional Foods and Their Effects on Swallowing Safety and Efficiency: An Exploratory Study. | Mocchetti V, Barewal R, Curtis JA, Erardi E, Scholl R, Rameau A | The Laryngoscope | 40851343 | Laryngoscope | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40851343 |
| Catalyzing Health AI by Fixing Payment Systems. | Razavian N, Batchu-Green P, Chowdhry V, Elemento O, Rajpurkar P, Saria S, Shah NH, Topol EJ | NEJM AI | 41695240 | NEJM AI | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41695240 |
| Using Generative Artificial Intelligence in the Production and Dissemination of Innovation in Otolaryngology-Ethical Considerations. | Khoury CJ, Enver N, Paderno A, Ratti E, Rameau A | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38044483 | Otolaryngol Head Neck Surg | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38044483 |
| Current Practices in Voice Data Collection and Limitations to Voice AI Research: A National Survey. | Evangelista E, Kale R, McCutcheon D, Rameau A, Gelbard A, Powell M, Johns M, Law A, Song P, Naunheim M, Watts S, Bryson PC, Crowson MG, Pinto J, Bridge2AI-Voice, Bensoussan Y | The Laryngoscope | 38087983 | Laryngoscope | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38087983 |
| A Novel Low-Cost, Open-Source, Three-Dimensionally Printed Thyroplasty Simulator. | Kostas JC, Lee M, Rameau A | Journal of voice : official journal of the Voice Foundation | 38036381 | J Voice | 2026 May | https://www.ncbi.nlm.nih.gov/pubmed/38036381 |
| Evidence-Based Recommendations for Tablet Recordings From the Bridge2AI-Voice Acoustic Experiments. | Awan SN, Bahr R, Watts S, Boyer M, Budinsky R, Bridge2AI-Voice Consortium, Bensoussan Y | Journal of voice : official journal of the Voice Foundation | 39306498 | J Voice | 2024 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/39306498 |
| Artificial Intelligence in Otolaryngology: Topics in Epistemology & Ethics. | Tai K, Zhao R, Rameau A | Otolaryngologic clinics of North America | 38839555 | Otolaryngol Clin North Am | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/38839555 |
| Elective Surgery Trends and Outcomes of Nonagenarians and Centenarians in Otolaryngology-Head and Neck Surgery: A NSQIP Study. | Srinivasan Y, Briano J, Czaja S, Lachs MS, Rosen AE, Stewart MG, Rameau A | The Laryngoscope | 38587164 | Laryngoscope | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38587164 |
| Design and Usability of an Open-Source, Low-Cost Flexible Laryngoscope for Resource-Limited Settings. | Srinivasan Y, Shamritsky D, Bhatta A, Chou E, Pham T, Sanghvi Y, Woolf L, Zhang M, Odigie E, Chidziva C, Muganda E, Zimani P, de Faria N, Rameau A | JAMA otolaryngology-- head & neck surgery | 38451500 | JAMA Otolaryngol Head Neck Surg | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38451500 |
| Generative Artificial Intelligence Methodology Reporting in Otolaryngology: A Scoping Review. | Alter IL, Chan K, Andreadis K, Rameau A | The Laryngoscope | 40995988 | Laryngoscope | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/40995988 |
| Digital health technologies in swallowing care from screening to rehabilitation: A narrative review. | Alter IL, Dias C, Briano J, Rameau A | Auris, nasus, larynx | 40403345 | Auris Nasus Larynx | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40403345 |
| Assessing Injectate Volume in Injection Laryngoplasty Using Low-Cost Handheld Ultrasonography: Feasibility Study in an Ex Vivo Porcine Model. | Lee M, Clark CM, Kervin SR, Baik E, Rameau A | Journal of voice : official journal of the Voice Foundation | 41093666 | J Voice | 2025 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/41093666 |
| Standardizing Survey Data Collection to Enhance Reproducibility: Development and Comparative Evaluation of the ReproSchema Ecosystem. | Chen Y, Jarecka D, Abraham SA, Gau R, Ng E, Low DM, Bevers I, Johnson A, Keshavan A, Klein A, Clucas J, Rosli Z, Hodge SM, Linkersdörfer J, Bartsch H, Das S, Fair D, Kennedy D, Ghosh SS | Journal of medical Internet research | 40644691 | J Med Internet Res | 2025 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/40644691 |
| Decoding Gender in Cough Sounds: A Transformer-Based Analysis. | He L, Li H, Wang S, Baik E, Kervin S, Zhao R, Ramos JM, Bridge2AI‐Voice Consortium, Colonel J, Rameau A | The Laryngoscope | 41588706 | Laryngoscope | 2026 Jun | https://www.ncbi.nlm.nih.gov/pubmed/41588706 |
| Implementing Artificial Intelligence in Critical Care Medicine: a consensus of 22. | Cecconi M, Greco M, Shickel B, Angus DC, Bailey H, Bignami E, Calandra T, Celi LA, Einav S, Elbers P, Ercole A, Gómez H, Gong MN, Komorowski M, Liu V, Park S, Sarwal A, Seymour CW, Zampieri FG, Taccone FS, Vincent JL, Bihorac A | Critical care (London, England) | 40629428 | Crit Care | 2025 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/40629428 |
| Raising awareness of potential biases in medical machine learning: Experience from a Datathon. | Hochheiser H, Klug J, Mathie T, Pollard TJ, Raffa JD, Ballard SL, Conrad EA, Edakalavan S, Joseph A, Alnomasy N, Nutman S, Hill V, Kapoor S, Claudio EP, Kravchenko OV, Li R, Nourelahi M, Diaz J, Taylor WM, Rooney SR, Woeltje M, Celi LA, Horvat CM | medRxiv : the preprint server for health sciences | 39502657 | medRxiv | 2024 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/39502657 |
| The TRIPOD-LLM reporting guideline for studies using large language models. | Gallifant J, Afshar M, Ameen S, Aphinyanaphongs Y, Chen S, Cacciamani G, Demner-Fushman D, Dligach D, Daneshjou R, Fernandes C, Hansen LH, Landman A, Lehmann L, McCoy LG, Miller T, Moreno A, Munch N, Restrepo D, Savova G, Umeton R, Gichoya JW, Collins GS, Moons KGM, Celi LA, Bitterman DS | Nature medicine | 39779929 | Nat Med | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39779929 |
| Continuous ECG monitoring should be the heart of bedside AI-based predictive analytics monitoring for early detection of clinical deterioration. | Monfredi OJ, Moore CC, Sullivan BA, Keim-Malpass J, Fairchild KD, Loftus TJ, Bihorac A, Krahn KN, Dubrawski A, Lake DE, Moorman JR, Clermont G | Journal of electrocardiology | 36434848 | J Electrocardiol | 2023 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/36434848 |
| Digital health and acute kidney injury: consensus report of the 27th Acute Disease Quality Initiative workgroup. | Kashani KB, Awdishu L, Bagshaw SM, Barreto EF, Claure-Del Granado R, Evans BJ, Forni LG, Ghosh E, Goldstein SL, Kane-Gill SL, Koola J, Koyner JL, Liu M, Murugan R, Nadkarni GN, Neyra JA, Ninan J, Ostermann M, Pannu N, Rashidi P, Ronco C, Rosner MH, Selby NM, Shickel B, Singh K, Soranno DE, Sutherland SM, Bihorac A, Mehta RL | Nature reviews. Nephrology | 37580570 | Nat Rev Nephrol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37580570 |
| POSTCARDS from a SIESTA: Crossing the Translational and Generalizability Gap for Predictive Models of Acute Respiratory Distress Syndrome-Related Mortality. | Wong AI, Kamaleswaran R | Critical care medicine | 37971334 | Crit Care Med | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37971334 |
| Minimizing bias when using artificial intelligence in critical care medicine. | Ranard BL, Park S, Jia Y, Zhang Y, Alwan F, Celi LA, Lusczek ER | Journal of critical care | 38552451 | J Crit Care | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38552451 |
| Common Data Elements for Disorders of Consciousness: Recommendations from the Working Group on Physiology and Big Data. | Beqiri E, Badjatia N, Ercole A, Foreman B, Hu P, Hu X, LaRovere K, Meyfroidt G, Moberg D, Robba C, Rosenthal ES, Smielewski P, Wainwright MS, Park S, Curing Coma Campaign and its Contributing Members | Neurocritical care | 37704934 | Neurocrit Care | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37704934 |
| Practice Standards for the Use of Multimodality Neuromonitoring: A Delphi Consensus Process. | Foreman B, Kapinos G, Wainwright MS, Ngwenya LB, O'Phelan KH, LaRovere KL, Kirschen MP, Appavu B, Lazaridis C, Alkhachroum A, Maciel CB, Amorim E, Chang JJ, Gilmore EJ, Rosenthal ES, Park S | Critical care medicine | 37607072 | Crit Care Med | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37607072 |
| Potential source of bias in AI models: lactate measurement in the ICU in sepsis patients as a template. | Pradhan P, Haug FW, Abu Hussein NS, Moukheiber D, Moukheiber L, Moukheiber M, Moukheiber S, Weishaupt LL, Ellen JG, D'Couto H, Williams IC, Celi LA, Matos J, Struja T | Frontiers in medicine | 40703300 | Front Med (Lausanne) | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40703300 |
| The TRIPOD-LLM reporting guideline for studies using large language models: a Korean translation. | Gallifant J, Afshar M, Ameen S, Aphinyanaphongs Y, Chen S, Cacciamani G, Demner-Fushman D, Dligach D, Daneshjou R, Fernandes C, Hansen LH, Landman A, Lehmann L, McCoy LG, Miller T, Moreno A, Munch N, Restrepo D, Savova G, Umeton R, Gichoya JW, Collins GS, Moons KGM, Celi LA, Bitterman DS | Ewha medical journal | 40739974 | Ewha Med J | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40739974 |
| CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-ray. | Lin M, Holste G, Wang S, Zhou Y, Wei Y, Banerjee I, Chen P, Dai T, Du Y, Dvornek NC, Ge Y, Guo Z, Hanaoka S, Kim D, Messina P, Lu Y, Parra D, Son D, Soto Á, Urooj A, Vidal R, Yamagishi Y, Yan P, Yang Z, Zhang R, Zhou Y, Celi LA, Summers RM, Lu Z, Chen H, Flanders A, Shih G, Wang Z, Peng Y | Medical image analysis | 40795541 | Med Image Anal | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/40795541 |
| Building a house without foundations? A 24-country qualitative interview study on artificial intelligence in intensive care medicine. | McLennan S, Fiske A, Celi LA | BMJ health & care informatics | 38642921 | BMJ Health Care Inform | 2024 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/38642921 |
| The effect of using a large language model to respond to patient messages. | Chen S, Guevara M, Moningi S, Hoebers F, Elhalawani H, Kann BH, Chipidza FE, Leeman J, Aerts HJWL, Miller T, Savova GK, Gallifant J, Celi LA, Mak RH, Lustberg M, Afshar M, Bitterman DS | The Lancet. Digital health | 38664108 | Lancet Digit Health | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38664108 |
| ClotCatcher: a novel natural language model to accurately adjudicate venous thromboembolism from radiology reports. | Wang J, de Vale JS, Gupta S, Upadhyaya P, Lisboa FA, Schobel SA, Elster EA, Dente CJ, Buchman TG, Kamaleswaran R | BMC medical informatics and decision making | 37974186 | BMC Med Inform Decis Mak | 2023 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/37974186 |
| Deriving Automated Device Metadata From Intracranial Pressure Waveforms: A Transforming Research and Clinical Knowledge in Traumatic Brain Injury ICU Physiology Cohort Analysis. | Ack SE, Dolmans RGF, Foreman B, Manley GT, Rosenthal ES, Zabihi M | Critical care explorations | 39016273 | Crit Care Explor | 2024 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/39016273 |
| Evaluating the feasibility of prehospital point-of-care EEG: The prehospital implementation of rapid EEG (PHIRE) study. | Guterman EL, Mercer MP, Wood AJ, Amorim E, Kleen JK, Gerard D, Kellison C, Yamashita S, Auerbach B, Joshi N, Sporer KA | Journal of the American College of Emergency Physicians open | 39281726 | J Am Coll Emerg Physicians Open | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39281726 |
| Efficiency and safety of high-dose undiluted intravenous push levetiracetam loading doses compared to intravenous infusion in seizing patients: A retrospective cohort study. | Koons M, Koehl J, Johnson R, Rosenthal ES, Webb AJ | Epilepsia | 39126370 | Epilepsia | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39126370 |
| Social Determinants of Health and Limitation of Life-Sustaining Therapy in Neurocritical Care: A CHoRUS Pilot Project. | Kwak GH, Kamdar HA, Douglas MJ, Hu H, Ack SE, Lissak IA, Williams AE, Yechoor N, Rosenthal ES | Neurocritical care | 38844599 | Neurocrit Care | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38844599 |
| Co-creating Consent for Data Use - AI-Powered Ethics for Biomedical AI. | Evans BJ, Bihorac A | NEJM AI | 40918051 | NEJM AI | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40918051 |
| Cross-Care: Assessing the Healthcare Implications of Pre-training Data on Language Model Bias. | Chen S, Gallifant J, Gao M, Moreira P, Munch N, Muthukkumar A, Rajan A, Kolluri J, Fiske A, Hastings J, Aerts H, Anthony B, Celi LA, La Cava WG, Bitterman DS | Advances in neural information processing systems | 40313683 | Adv Neural Inf Process Syst | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/40313683 |
| Peer review of GPT-4 technical report and systems card. | Gallifant J, Fiske A, Levites Strekalova YA, Osorio-Valencia JS, Parke R, Mwavu R, Martinez N, Gichoya JW, Ghassemi M, Demner-Fushman D, McCoy LG, Celi LA, Pierce R | PLOS digital health | 38236824 | PLOS Digit Health | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38236824 |
| A multimodal framework for extraction and fusion of satellite images and public health data. | Moukheiber D, Restrepo D, Cajas SA, Montoya MPA, Celi LA, Kuo KT, López DM, Moukheiber L, Moukheiber M, Moukheiber S, Osorio-Valencia JS, Purkayastha S, Paddo AR, Wu C, Kuo PC | Scientific data | 38879585 | Sci Data | 2024 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/38879585 |
| Forecasting algorithms in the ICU. | Rooney SR, Clermont G | Journal of electrocardiology | 37883866 | J Electrocardiol | 2023 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/37883866 |
| Does diversity beget diversity? A scientometric analysis of over 150,000 studies and 49,000 authors published in high-impact medical journals between 2007 and 2022. | Charpignon ML, Matos J, Nakayama L, Gallifant J, Alfonso PGI, Cobanaj M, Fiske A, Gates AJ, Ho FDV, Jain U, Kashkooli M, McCoy LG, Shaffer J, Link Woite N, Celi LA | medRxiv : the preprint server for health sciences | 38562711 | medRxiv | 2024 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/38562711 |
| Why federated learning will do little to overcome the deeply embedded biases in clinical medicine. | Sauer CM, Pucher G, Celi LA | Intensive care medicine | 38829532 | Intensive Care Med | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38829532 |
| DF-DM: A foundational process model for multimodal data fusion in the artificial intelligence era. | Restrepo D, Wu C, Vásquez-Venegas C, Nakayama LF, Celi LA, López DM | Research square | 38746100 | Res Sq | 2024 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/38746100 |
| Language Models are Surprisingly Fragile to Drug Names in Biomedical Benchmarks. | Gallifant J, Chen S, Moreira P, Munch N, Gao M, Pond J, Aerts H, Celi LA, Hartvigsen T, Bitterman DS | Findings of ACL. EMNLP. Conference on Empirical Methods in Natural Language Processing | 41341631 | Find ACL EMNLP | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/41341631 |
| CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-ray. | Lin M, Holste G, Wang S, Zhou Y, Wei Y, Banerjee I, Chen P, Dai T, Du Y, Dvornek NC, Ge Y, Guo Z, Hanaoka S, Kim D, Messina P, Lu Y, Parra D, Son D, Soto Á, Urooj A, Vidal R, Yamagishi Y, Yang Z, Zhang R, Zhou Y, Celi LA, Summers RM, Lu Z, Chen H, Flanders A, Shih G, Wang Z, Peng Y | ArXiv | 40735106 | ArXiv | 2025 Jun 9 | https://www.ncbi.nlm.nih.gov/pubmed/40735106 |
| GRACE-ICU: A multimodal nomogram-based approach for illness severity assessment of older adults in the ICU. | Liu X, Yeung W, Chen Z, Hao S, Yang Z, Sun X, Liu C, Mao Z, Yan M, Yan W, Cao D, Feng M, Li D, Zhang Z, Celi LA | NPJ digital medicine | 40804187 | NPJ Digit Med | 2025 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/40804187 |
| External Validation of the Fraser Equation for Estimation of Free Valproate Concentrations in Critically Ill Adults. | Webb AJ, Brown CS, Liu J, Riker RR, Lopez ND, Rosenthal ES, Zafar SF, Gagnon DJ | Pharmacotherapy | 41246825 | Pharmacotherapy | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41246825 |
| Equipping mathematical models for hospital dynamics using information theory. | Balch JA, Brandberg JG, Andris RT, Mesner IG, Nametz DC, Megjhani M, Ruppert MM, Hu D, Clark MT, Shickel B, Ranard BL, Delos JB, Albers DJ, Loftus TJ, Park S, Randall Moorman J | NPJ digital medicine | 41225138 | NPJ Digit Med | 2025 Nov 12 | https://www.ncbi.nlm.nih.gov/pubmed/41225138 |
| Dynamic Delirium Prediction in the Intensive Care Unit using Machine Learning on Electronic Health Records. | Contreras M, Silva B, Shickel B, Bandyopadhyay S, Guan Z, Ren Y, Ozrazgat-Baslanti T, Khezeli K, Bihorac A, Rashidi P | ... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics | 38585187 | IEEE EMBS Int Conf Biomed Health Inform | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/38585187 |
| BRSET: A Brazilian Multilabel Ophthalmological Dataset of Retina Fundus Photos. | Nakayama LF, Restrepo D, Matos J, Ribeiro LZ, Malerbi FK, Celi LA, Regatieri CS | medRxiv : the preprint server for health sciences | 38343827 | medRxiv | 2024 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/38343827 |
| Differences in Arterial Blood Gas Testing by Race and Sex across 161 U.S. Hospitals in Four Electronic Health Record Databases. | Matos J, Alwakeel M, Hao S, Naamani D, Struja T, Gichoya JW, Celi LA, McMahon T, King HA, Cox CE, Kibbe WA, Hong C, Wong AI | American journal of respiratory and critical care medicine | 40126408 | Am J Respir Crit Care Med | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40126408 |
| A Quantitative Electroencephalographic Index for Stroke Detection in Adults. | Caffarelli M, Simmons R, Tolokh I, Karukonda V, Guterman EL, Smith W, Fox CK, Westover MB, Amorim E | Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society | 40048377 | J Clin Neurophysiol | 2026 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/40048377 |
| Electronic Health Record Data Quality and Performance Assessments: Scoping Review. | Penev YP, Buchanan TR, Ruppert MM, Liu M, Shekouhi R, Guan Z, Balch J, Ozrazgat-Baslanti T, Shickel B, Loftus TJ, Bihorac A | JMIR medical informatics | 39504136 | JMIR Med Inform | 2024 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/39504136 |
| Detecting and Mitigating the Clever Hans Effect in Medical Imaging: A Scoping Review. | Vásquez-Venegas C, Wu C, Sundar S, Prôa R, Beloy FJ, Medina JR, McNichol M, Parvataneni K, Kurtzman N, Mirshawka F, Aguirre-Jerez M, Ebner DK, Celi LA | Journal of imaging informatics in medicine | 39643820 | J Imaging Inform Med | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/39643820 |
| Practice-Pattern Variation in Sedation of Neurotrauma Patients in the Intensive Care Unit: An International Survey. | Dolmans RGF, Nahed BV, Robertson FC, Peul WC, Rosenthal ES, Broekman MLD | Journal of intensive care medicine | 37415510 | J Intensive Care Med | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37415510 |
| Building health systems capable of leveraging AI: applying Paul Farmer's 5S framework for equitable global health. | McCoy LG, Bihorac A, Celi LA, Elmore M, Kewalramani D, Kwaga T, Martinez-Martin N, Prôa R, Schamroth J, Shaffer JD, Youssef A, Fiske A | BMC global and public health | 40312417 | BMC Glob Public Health | 2025 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/40312417 |
| Utility and rationale for continuous EEG monitoring: a primer for the general intensivist. | Bitar R, Khan UM, Rosenthal ES | Critical care (London, England) | 39014421 | Crit Care | 2024 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/39014421 |
| A toolbox for surfacing health equity harms and biases in large language models. | Pfohl SR, Cole-Lewis H, Sayres R, Neal D, Asiedu M, Dieng A, Tomasev N, Rashid QM, Azizi S, Rostamzadeh N, McCoy LG, Celi LA, Liu Y, Schaekermann M, Walton A, Parrish A, Nagpal C, Singh P, Dewitt A, Mansfield P, Prakash S, Heller K, Karthikesalingam A, Semturs C, Barral J, Corrado G, Matias Y, Smith-Loud J, Horn I, Singhal K | Nature medicine | 39313595 | Nat Med | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39313595 |
| Navigating the Complexities of Artificial Intelligence-Enabled Real-World Data Collection for Oncology Pharmacovigilance. | Gallifant J, Celi LA, Sharon E, Bitterman DS | JCO clinical cancer informatics | 38713889 | JCO Clin Cancer Inform | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38713889 |
| Harvard Electroencephalography Database: A comprehensive clinical electroencephalographic resource from four Boston hospitals. | Sun C, Jing J, Turley N, Alcott C, Kang WY, Cole AJ, Goldenholz DM, Lam A, Amorim E, Chu C, Cash S, Junior VM, Gupta A, Ghanta M, Nearing B, Nascimento FA, Struck A, Kim J, Sartipi S, Tauton AM, Fernandes M, Sun H, Bayas G, Gallagher K, Wagenaar JB, Sinha N, Lee-Messer C, Silvers CT, Gunapati B, Rosand J, Peters J, Loddenkemper T, Lee JW, Zafar S, Westover MB | Epilepsia | 40464151 | Epilepsia | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40464151 |
| Multi-View Echocardiographic Embedding for Accessible AI Development. | Tohyama T, Han A, Yoon D, Paik K, Gow B, Izath N, Kpodonu J, Celi LA | medRxiv : the preprint server for health sciences | 40894133 | medRxiv | 2025 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/40894133 |
| Contextual nonmedical health factors and critical care-related outcomes: a systematic review. | Adiyeke E, Fleeting C, Davidson A, Sree Vedala SA, Johnson C, Uddin R, Newsom M, Guo SJ, Guo Y, Ozrazgat-Baslanti T, Bihorac A | Critical care (London, England) | 41354824 | Crit Care | 2025 Dec 7 | https://www.ncbi.nlm.nih.gov/pubmed/41354824 |
| Testing the 'Faith Moves Mountains model' to increase Alzheimer's disease awareness, detection, and diagnosis among rural, racially, and ethnically diverse older adults. | Wiese LK, Williams IC, Holt JK, Williams CL, Lingler J, Galvin JE, Schoenberg NE | Aging & mental health | 38127408 | Aging Ment Health | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38127408 |
| Multi-dimensional patient acuity estimation with longitudinal EHR tokenization and flexible transformer networks. | Shickel B, Silva B, Ozrazgat-Baslanti T, Ren Y, Khezeli K, Guan Z, Tighe PJ, Bihorac A, Rashidi P | Frontiers in digital health | 36440460 | Front Digit Health | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36440460 |
| Clinical Consequences of Disproportionate Free Valproate Elevation in Critically Ill Adult Patients: A Multicenter Retrospective Cohort Study. | Webb AJ, Gagnon DJ, Brown CS, Riker RR, Lopez ND, Goodberlet MZ, Schontz MJ, Marino KK, Zafar SF, Rosenthal ES | Neurocritical care | 40133756 | Neurocrit Care | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40133756 |
| Potential source of bias in AI models: Lactate measurement in the ICU as a template. | Hussein NSA, Pradhan P, Haug FW, Moukheiber D, Moukheiber L, Moukheiber M, Moukheiber S, Weishaupt LL, Ellen JG, D'Couto H, Williams IC, Celi LA, Matos J, Struja T | Research square | 39975902 | Res Sq | 2025 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/39975902 |
| Septic Shock Requiring Three Vasopressors: Patient Demographics and Outcomes. | Kwak GH, Madushani RWMA, Adhikari L, Yan AY, Rosenthal ES, Sebbane K, Yanes Z, Restrepo D, Wong A, Celi LA, Kistler EA | Critical care explorations | 39513987 | Crit Care Explor | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39513987 |
| Competing interests: digital health and indigenous data sovereignty. | Cordes A, Bak M, Lyndon M, Hudson M, Fiske A, Celi LA, McLennan S | NPJ digital medicine | 38965365 | NPJ Digit Med | 2024 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/38965365 |
| Drop the shortcuts: image augmentation improves fairness and decreases AI detection of race and other demographics from medical images. | Wang R, Kuo PC, Chen LC, Seastedt KP, Gichoya JW, Celi LA | EBioMedicine | 38471396 | EBioMedicine | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38471396 |
| Ethical debates amidst flawed healthcare artificial intelligence metrics. | Gallifant J, Bitterman DS, Celi LA, Gichoya JW, Matos J, McCoy LG, Pierce RL | NPJ digital medicine | 39261642 | NPJ Digit Med | 2024 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/39261642 |
| Artificial intelligence in healthcare: Opportunities come with landmines. | Iqbal U, Hsu YE, Celi LA, Li YJ | BMJ health & care informatics | 38839426 | BMJ Health Care Inform | 2024 Jun 5 | https://www.ncbi.nlm.nih.gov/pubmed/38839426 |
| Toward a Universal Map of EEG: A Semantic, Low-Dimensional Manifold for EEG Classification, Clustering, and Prognostication. | Krumm L, Kranz DD, Halimeh M, Nelde A, Amorim E, Zafar S, Jing J, Thomas RJ, Westover MB, Meisel C | Annals of neurology | 40539771 | Ann Neurol | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40539771 |
| Raising awareness of potential biases in medical machine learning: Experience from a Datathon. | Hochheiser H, Klug J, Mathie T, Pollard TJ, Raffa JD, Ballard SL, Conrad EA, Edakalavan S, Joseph A, Alnomasy N, Nutman S, Hill V, Kapoor S, Claudio EP, Kravchenko OV, Li R, Nourelahi M, Diaz J, Taylor WM, Rooney SR, Woeltje M, Celi LA, Horvat CM | PLOS digital health | 40644462 | PLOS Digit Health | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40644462 |
| What is the ideal glucose range for a patient with sepsis in the ICU? A retrospective analysis of MIMIC-IV. | Struja T, Hansen LH, Matos J, Gómez J, Pardo A, Lourentzou I, Hejazi N, Celi LA, Waschka AK | BMJ open | 41605594 | BMJ Open | 2026 Jan 28 | https://www.ncbi.nlm.nih.gov/pubmed/41605594 |
| Covert brain complexity in the intensive care unit. | Fecchio M, Schreier DR, Cambareri MK, Nisticò V, Freeman HJ, Lawrence PK, Bodien YG, Young MJ, Wu O, Edlow BL | Cortex; a journal devoted to the study of the nervous system and behavior | 42090748 | Cortex | 2026 Aug | https://www.ncbi.nlm.nih.gov/pubmed/42090748 |
| Automated Quantitative Assessment of Retinal Vascular Tortuosity in Patients with Sickle Cell Disease. | Chen JS, Kalaw FGP, Nudleman ED, Scott NL | Ophthalmology science | 39886358 | Ophthalmol Sci | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/39886358 |
| Dry eye disease treatment improves subjective quality-of-life responses in patients with AMD, independent of disease stage. | Mehta NN, Nagel ID, Agnihotri A, Heinke A, Cheng L, Bartsch DU, Freeman WR, Gomez ML | PloS one | 39913504 | PLoS One | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/39913504 |
| Variations in Using Diagnosis Codes for Defining Age-Related Macular Degeneration Cohorts. | Kalaw FGP, Chen JS, Baxter SL | Informatics (MDPI) | 40012991 | Informatics (MDPI) | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40012991 |
| Predictors of Health Care Disparities in Fuchs Dystrophy Treatment Using the IRIS Registry. | Jiang Y, Davidson O, Blazes M, Rajesh AE, Lomazow W, Bagsadarova Y, Lee AY, Lee CS, Sundararajan M, IRIS Registry Analytic Center Consortium | Cornea | 39778162 | Cornea | 2026 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/39778162 |
| Comparison of a Novel Ultra-Widefield Three-Color Scanning Laser Ophthalmoscope to Other Retinal Imaging Modalities in Chorioretinal Lesion Imaging. | Nagel ID, Heinke A, Agnihotri AP, Yassin S, Cheng L, Camp AS, Scott NL, Kalaw FGP, Borooah S, Bartsch DG, Mueller AJ, Mehta N, Freeman WR | Translational vision science & technology | 39804659 | Transl Vis Sci Technol | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39804659 |
| Developing an image-based grading scale for peripheral drusen to investigate associations of peripheral drusen type with age-related macular degeneration. | Sharma P, Kalaw FGP, Lin A, Walker EH, Borooah S | Scientific reports | 39198593 | Sci Rep | 2024 Aug 29 | https://www.ncbi.nlm.nih.gov/pubmed/39198593 |
| Federated Learning in Glaucoma: A Comprehensive Review and Future Perspectives. | Hallaj S, Chuter BG, Lieu AC, Singh P, Kalpathy-Cramer J, Xu BY, Christopher M, Zangwill LM, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39214457 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39214457 |
| Association Between Glucagon-Like Peptide-1 Receptor Agonists Exposure and Intraocular Pressure Change: GLP-1 Receptor Agonists and Intraocular Pressure Change. | Hallaj S, Halfpenny W, Chuter BG, Weinreb RN, Baxter SL, Cui QN | American journal of ophthalmology | 39237049 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39237049 |
| Next-generation phenotyping of inherited retinal diseases from multimodal imaging with Eye2Gene. | Pontikos N, Woof WA, Lin S, Ghoshal B, Mendes BS, Veturi A, Nguyen Q, Javanmardi B, Georgiou M, Hustinx A, Ibarra-Arellano MA, Moghul I, Liu Y, Pfau K, Pfau M, Shah M, Yu J, Al-Khuzaei S, Wagner SK, Daich Varela M, Cabral de Guimarães TA, Sen S, Naik G, Sumodhee D, Fu DJ, Kabiri N, Furman J, Liefers B, Lee AY, De Silva SR, Marques C, Motta F, Fujinami-Yokokawa Y, Hardcastle AJ, Arno G, Lorenz B, Herrmann P, Fujinami K, Sallum J, Madhusudhan S, Downes SM, Holz FG, Balaskas K, Webster AR, Mahroo OA, Krawitz PM, Michaelides M | Nature machine intelligence | 40567353 | Nat Mach Intell | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40567353 |
| Enhancing diagnostic accuracy in rare and common fundus diseases with a knowledge-rich vision-language model. | Wang M, Lin T, Lin A, Yu K, Peng Y, Wang L, Chen C, Zou K, Liang H, Chen M, Yao X, Zhang M, Huang B, Zheng C, Zhang P, Chen W, Luo Y, Chen Y, Xia H, Shi T, Zhang Q, Guo J, Chen X, Wang J, Tham YC, Liu D, Wong W, Thakur S, Fenner BJ, Fang D, Liu S, Liu Q, Huang Y, Zeng H, Meng Y, Zhou Y, Jiang Z, Qiu M, Zhang C, Chen X, Wang SY, Lee CS, Sobrin L, Cheung CY, Pang CP, Keane PA, Cheng CY, Chen H, Fu H | Nature communications | 40592857 | Nat Commun | 2025 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/40592857 |
| ARTIFICIAL INTELLIGENCE-ENHANCED OPTICAL COHERENCE TOMOGRAPHY ANALYSIS FOR DETECTING INTERNAL LIMITING MEMBRANE REMOVAL IN EPIRETINAL MEMBRANE SURGERY. | Mehta NN, Le AD, Nagel ID, Agnihotri A, Heinke A, Cheng L, Bartsch DU, Tran M, Truong N, Cheolhong A, Freeman WR | Retina (Philadelphia, Pa.) | 40638841 | Retina | 2025 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/40638841 |
| Evaluating a Foundation Artificial Intelligence Model for Glaucoma Detection Using Color Fundus Photographs. | Chuter B, Huynh J, Hallaj S, Walker E, Liebmann JM, Fazio MA, Girkin CA, Weinreb RN, Christopher M, Zangwill LM | Ophthalmology science | 39650567 | Ophthalmol Sci | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39650567 |
| RETINAL VESSELS WHITENING IN RETINITIS PIGMENTOSA. | Yassin SH, Wagner NE, Kalaw FGP, Sharma P, Arias JD, Tran M, Nagel I, Walker E, Borooah S | Retina (Philadelphia, Pa.) | 40262144 | Retina | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/40262144 |
| A Data-driven Age-related Macular Degeneration Severity Scoring System Leveraging the AREDS Studies and Clinical Electronic Medical Records. | Lee CS, Su YR, Walker RL, Krakauer C, Blazes M, Johnson EA, Cronkite D, Bowers W, Hess C, Arterburn D, Agrón E, Chew EY, Crane PK | Ophthalmology | 40311699 | Ophthalmology | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40311699 |
| Machine learning derived retinal pigment score from ophthalmic imaging shows ethnicity is not biology. | Rajesh AE, Olvera-Barrios A, Warwick AN, Wu Y, Stuart KV, Biradar MI, Ung CY, Khawaja AP, Luben R, Foster PJ, Cleland CR, Makupa WU, Denniston AK, Burton MJ, Bastawrous A, Keane PA, Chia MA, Turner AW, Lee CS, Tufail A, Lee AY, Egan C, UK Biobank Eye and Vision Consortium | Nature communications | 39746957 | Nat Commun | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39746957 |
| Just how transformative will AI/ML be for immuno-oncology? | Bottomly D, McWeeney S | Journal for immunotherapy of cancer | 38531545 | J Immunother Cancer | 2024 Mar 25 | https://www.ncbi.nlm.nih.gov/pubmed/38531545 |
| Race, Ethnicity, Insurance, and Population Density Associations with Pediatric Strabismus and Strabismic Amblyopia in the IRIS® Registry. | Rajesh AE, Davidson O, Lacy M, Chandramohan A, Lee AY, Lee CS, Tarczy-Hornoch K, IRIS® Registry Analytic Center Consortium | Ophthalmology | 37331481 | Ophthalmology | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37331481 |
| What will the future role for large language models (LLMs) be in managing patients with glaucoma? | Tavakoli K, Hallaj S, Baxter SL | Expert review of ophthalmology | 40800545 | Expert Rev Ophthalmol | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40800545 |
| Effect of manual OCTA segmentation correction to improve image quality and visibility of choroidal neovascularization in AMD. | Deussen DN, Heinke A, Elsner W, Galang CMB, Kalaw FGP, Warter A, Bartsch DU, Cheng L, Freeman WR | Scientific reports | 38886462 | Sci Rep | 2024 Jun 18 | https://www.ncbi.nlm.nih.gov/pubmed/38886462 |
| Ultra-wide field and new wide field composite retinal image registration with AI-enabled pipeline and 3D distortion correction algorithm. | Kalaw FGP, Cavichini M, Zhang J, Wen B, Lin AC, Heinke A, Nguyen T, An C, Bartsch DG, Cheng L, Freeman WR | Eye (London, England) | 38114568 | Eye (Lond) | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38114568 |
| High Prevalence of Artifacts in Optical Coherence Tomography With Adequate Signal Strength. | Lin WC, Coyner AS, Amankwa CE, Lucero A, Wollstein G, Schuman JS, Ishikawa H | Translational vision science & technology | 39196579 | Transl Vis Sci Technol | 2024 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/39196579 |
| A Clinician's Guide to Sharing Data for AI in Ophthalmology. | Gim N, Wu Y, Blazes M, Lee CS, Wang RK, Lee AY | Investigative ophthalmology & visual science | 38864811 | Invest Ophthalmol Vis Sci | 2024 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/38864811 |
| Fostering Multidisciplinary Collaboration in Artificial Intelligence and Machine Learning Education: Tutorial Based on the AI-READI Bootcamp. | Nishihara TW, Kalaw FGP, Engmann A, Motoyoshi A, Mensah-Kane P, Gupta D, Patronilo V, Zangwill LM, Hallaj S, Panahi A, Cottrell GW, Voytek B, de Sa VR, Baxter SL | JMIR medical education | 41461109 | JMIR Med Educ | 2025 Dec 29 | https://www.ncbi.nlm.nih.gov/pubmed/41461109 |
| Glaucoma Detection and Structured OCT Report Generation via a Fine-tuned Multimodal Large Language Model. | Jalili J, Gavhane Y, Walker E, Heinke A, Bowd C, Belghith A, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Baxter SL, Weinreb RN, Zangwill LM, Christopher M | ArXiv | 41256877 | ArXiv | 2025 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/41256877 |
| Beyond convolutions and supervised learning with transformers and representation learning for retinal image analysis. | Wu Y, Lee CS, Lee AY | Progress in retinal and eye research | 41352580 | Prog Retin Eye Res | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/41352580 |
| Ground Truth Reliability and Clinical Generalisability in Deep Learning for Reticular Pseudodrusen-Response. | Kumar H, Bagdasarova Y, Guymer RH, Lee AY, Wu Z | Clinical & experimental ophthalmology | 41839708 | Clin Exp Ophthalmol | 2026 Jul | https://www.ncbi.nlm.nih.gov/pubmed/41839708 |
| Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. | Wu Y, Olvera-Barrios A, Yanagihara R, Kung TH, Lu R, Leung I, Mishra AV, Nussinovitch H, Grimaldi G, Blazes M, Lee CS, Egan C, Tufail A, Lee AY | Ophthalmology | 36154868 | Ophthalmology | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36154868 |
| Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. | Lee CS, Krakauer C, Su YR, Walker RL, Blazes M, McCurry SM, Bowen JD, McCormick WC, Lee AY, Boyko EJ, O'Hare AM, Larson EB, Crane PK | American journal of ophthalmology | 36513155 | Am J Ophthalmol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36513155 |
| Ethnicity is not biology: retinal pigment score to evaluate biological variability from ophthalmic imaging using machine learning. | Rajesh AE, Olvera-Barrios A, Warwick AN, Wu Y, Stuart KV, Biradar M, Ung CY, Khawaja AP, Luben R, Foster PJ, Lee CS, Tufail A, Lee AY, Egan C, EPIC Norfolk, UK Biobank Eye and Vision Consortium | medRxiv : the preprint server for health sciences | 37461664 | medRxiv | 2023 Jul 6 | https://www.ncbi.nlm.nih.gov/pubmed/37461664 |
| Systemic Carbonic Anhydrase Inhibitors in Common Ophthalmic Diseases: A Scoping Review from A Clinical Standpoint. | Hallaj S, Shalaby WS, Sinha S, Myers JS, Razeghinejad R | Current ophthalmology reports | 40642047 | Curr Ophthalmol Rep | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40642047 |
| Retinal imaging in an era of open science and privacy protection. | Gim N, Blazes M, Sánchez CI, Zalunardo L, Corradetti G, Elze T, Honda N, Waheed NK, Cairns AM, Canto-Soler MV, Domalpally A, Durbin M, Ferrara D, Hu J, Nair P, Sadda SR, Keenan TDL, Lee CS, RIMR Consortium | Experimental eye research | 40090567 | Exp Eye Res | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40090567 |
| Deep Learning-Based Detection of Reticular Pseudodrusen in Age-Related Macular Degeneration. | Kumar H, Bagdasarova Y, Song S, Hickey DG, Cohn AC, Okada M, Finger RP, Terheyden JH, Hogg RE, Gabrielle PH, Arnould L, Jannaud M, Hadoux X, van Wijngaarden P, Abbott CJ, Hodgson LAB, Schwartz R, Tufail A, Chew EY, Lee CS, Fletcher EL, Bahlo M, Ansell BRE, Pébay A, Guymer RH, Lee AY, Wu Z | Clinical & experimental ophthalmology | 40922557 | Clin Exp Ophthalmol | 2026 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/40922557 |
| Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. | Kalaw FGP, Tavakoli K, Baxter SL | Ophthalmology science | 38025157 | Ophthalmol Sci | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38025157 |
| High Myopia Normative Database of Peripapillary Retinal Nerve Fiber Layer Thickness to Detect Myopic Glaucoma in a Chinese Population. | Song Y, Li F, Chong RS, Wang W, Ran AR, Lin F, Wang P, Wang Z, Jiang J, Kong K, Jin L, Chen M, Sun J, Wang D, Tham CC, Lam DSC, Zangwill LM, Weinreb RN, Aung T, Jonas JB, Ohno-Matsui K, Cheng CY, Bressler NM, Sun X, Cheung CY, Chen S, Zhang X, Glaucoma Suspects with High Myopia Study Group | Ophthalmology | 37499953 | Ophthalmology | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37499953 |
| Artificial Intelligence and Diabetic Retinopathy: AI Framework, Prospective Studies, Head-to-head Validation, and Cost-effectiveness. | Rajesh AE, Davidson OQ, Lee CS, Lee AY | Diabetes care | 37729502 | Diabetes Care | 2023 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/37729502 |
| Developing a Continuous Severity Scale for Macular Telangiectasia Type 2 Using Deep Learning and Implications for Disease Grading. | Wu Y, Egan C, Olvera-Barrios A, Scheppke L, Peto T, Charbel Issa P, Heeren TFC, Leung I, Rajesh AE, Tufail A, Lee CS, Chew EY, Friedlander M, Lee AY | Ophthalmology | 37739233 | Ophthalmology | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37739233 |
| Variations in Electronic Health Record-Based Definitions of Diabetic Retinopathy Cohorts: A Literature Review and Quantitative Analysis. | Chen JS, Copado IA, Vallejos C, Kalaw FGP, Soe P, Cai CX, Toy BC, Borkar D, Sun CQ, Shantha JG, Baxter SL | Ophthalmology science | 38560278 | Ophthalmol Sci | 2024 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/38560278 |
| Eye Adult Changes in Thought (Eye ACT) Study: Design and Report on the Inaugural Cohort. | Lee CS, Ferguson AN, Gibbons LE, Walker R, Su YR, Krakauer C, Brush M, Kam J, Larson EB, Arterburn DE, Crane PK, Eye ACT Study Group: | Journal of Alzheimer's disease : JAD | 38875039 | J Alzheimers Dis | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38875039 |
| Performance of General-Purpose Vision Language Models and Ophthalmology Foundation Models in Glaucoma Detection and Function Prediction. | Jalili J, Huynh J, Walker E, Chuter BG, Bowd C, Heinke A, Belghith A, Goldbaum MH, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Baxter SL, Weinreb RN, Zangwill LM, Christopher M | Translational vision science & technology | 41258693 | Transl Vis Sci Technol | 2025 Nov 3 | https://www.ncbi.nlm.nih.gov/pubmed/41258693 |
| Disparities in Eye Care Utilization Among Refugee and Migrant Populations. | Copado IA, Hallaj S, Radha Saseendrakumar B, Baxter SL | Translational vision science & technology | 38376863 | Transl Vis Sci Technol | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/38376863 |
| Cross-instrument optical coherence tomography-angiography (OCTA)-based prediction of age-related macular degeneration (AMD) disease activity using artificial intelligence. | Heinke A, Zhang H, Broniarek K, Michalska-Małecka K, Elsner W, Galang CMB, Deussen DN, Warter A, Kalaw F, Nagel I, Agnihotri A, Mehta NN, Klaas JE, Schmelter V, Kozak I, Baxter SL, Bartsch DU, Cheng L, An C, Nguyen T, Freeman WR | Scientific reports | 39511248 | Sci Rep | 2024 Nov 7 | https://www.ncbi.nlm.nih.gov/pubmed/39511248 |
| AI-READI: rethinking AI data collection, preparation and sharing in diabetes research and beyond. | AI-READI Consortium | Nature metabolism | 39516364 | Nat Metab | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39516364 |
| Differences in macular thickness associated with peripheral retinal vessel whitening in diabetic patients. | Kalaw FGP, Sharma P, Walker E, Borooah S | Scientific reports | 39191790 | Sci Rep | 2024 Aug 27 | https://www.ncbi.nlm.nih.gov/pubmed/39191790 |
| Estimating Uncertainty of Geographic Atrophy Segmentations with Bayesian Deep Learning. | Spaide T, Rajesh AE, Gim N, Blazes M, Lee CS, Macivannan N, Lee G, Lewis W, Salehi A, de Sisternes L, Herrera G, Shen M, Gregori G, Rosenfeld PJ, Pramil V, Waheed N, Wu Y, Zhang Q, Lee AY | Ophthalmology science | 39380882 | Ophthalmol Sci | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39380882 |
| Risk of Falls, Fear of Falling, and Rates of Visual Field Progression in Glaucoma in the African Descent and Glaucoma Evaluation Study. | Dagi AF, De Moraes CG, Girkin CA, Cioffi GA, Weinreb RN, Zangwill LM, Liebmann JM | Ophthalmology. Glaucoma | 39988272 | Ophthalmol Glaucoma | 2025 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/39988272 |
| Dataset documentation for responsible AI: analysis of suitability and usage for health datasets. | Heinke A, Huang L, Simpkins KU, Kalaw FGP, Karsolia A, Singh K, Soundarajan S, Panny B, Nebeker C, Baxter SL, Lee CS, Lee AY, Patel B, AI-READI Consortium | NPJ digital medicine | 42106553 | NPJ Digit Med | 2026 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/42106553 |
| Evaluating Access to Laser Eye Surgery by Driving Times Using Medicare Data and Geographical Mapping. | Shaffer J, Rajesh A, Stewart MW, Lee AY, Miller DD, Lee CS, Francis CE | JAMA ophthalmology | 37471084 | JAMA Ophthalmol | 2023 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/37471084 |
| Trends and practices following the 2016 hydroxychloroquine screening guidelines. | Kalaw FGP, Arnett J, Baxter SL, Walker E, Pedersen B, Borooah S | Scientific reports | 37730825 | Sci Rep | 2023 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/37730825 |
| Long-Term Surgical Outcomes of Glaucoma Drainage Implants in Eyes with Preoperative Intraocular Pressure Less than 19 mmHg. | Hallaj S, Wong JC, Hock LE, Kolomeyer NN, Shukla AG, Pro MJ, Moster MR, Myers JS, Razeghinejad R, Lee D | Journal of ophthalmology | 38304290 | J Ophthalmol | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38304290 |
| Associations between dementia and exposure to topical glaucoma medications. | Davidson O, Lee ML, Kam JP, Brush M, Rajesh A, Blazes M, Arterburn DE, Duerr E, Gibbons LE, Crane PK, Lee CS, Eye ACT study group | Journal of Alzheimer's disease : JAD | 39834248 | J Alzheimers Dis | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39834248 |
| Glaucoma Detection and Feature Identification via GPT-4V Fundus Image Analysis. | Jalili J, Jiravarnsirikul A, Bowd C, Chuter B, Belghith A, Goldbaum MH, Baxter SL, Weinreb RN, Zangwill LM, Christopher M | Ophthalmology science | 39877464 | Ophthalmol Sci | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/39877464 |
| Cross-sectional design and protocol for Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights (AI-READI). | Owsley C, Matthies DS, McGwin G, Edberg JC, Baxter SL, Zangwill LM, Owen JP, Lee CS, AI-READI Consortium | BMJ open | 39915016 | BMJ Open | 2025 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/39915016 |
| Using Multimodal Imaging to Refine the Phenotype of PRPH2-associated Retinal Degeneration. | Kalaw FGP, Wagner NE, de Oliveira TB, Everett LA, Yang P, Pennesi ME, Borooah S | Ophthalmology. Retina | 39089460 | Ophthalmol Retina | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39089460 |
| A review of ophthalmology education in the era of generative artificial intelligence. | Heinke A, Radgoudarzi N, Huang BB, Baxter SL | Asia-Pacific journal of ophthalmology (Philadelphia, Pa.) | 39134176 | Asia Pac J Ophthalmol (Phila) | 2024 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/39134176 |
| Gap Analysis of Glaucoma Examination Concept Representations within Standard Systemized Nomenclature of Medicine - Clinical Terms. | Hallaj S, Khawaja AP, Rodrigues IAS, Boland MV, Brown EN, Chen A, Stagg BC, Stein JD, Sun CQ, Mahe-Cook AL, Swaminathan SS, Wang SY, Xu BY, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39147325 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39147325 |
| Quantification of Optical Coherence Tomography Features in >3500 Patients with Inherited Retinal Disease Reveals Novel Genotype-Phenotype Associations. | Woof W, de Guimarães TAC, Al-Khuzaei S, Varela MD, Shah M, Naik G, Sen S, Bagga P, Mendes B, Chan YW, Lin S, Ghoshal B, Liefers B, Fu DJ, Georgiou M, da Silva AS, Nguyen Q, Liu Y, Sumodhee D, Fujinami-Yokokawa Y, Patel PJ, Furman J, Moghul I, Moosajee M, Sallum J, De Silva SR, Lorenz B, Herrmann P, Holz FG, Fujinami K, Webster AR, Mahroo OA, Downes SM, Madhusuhan S, Balaskas K, Michaelides M, Pontikos N | medRxiv : the preprint server for health sciences | 40630585 | medRxiv | 2025 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/40630585 |
| The march to harmonized imaging standards for retinal imaging. | Gim N, Ferguson AN, Blazes M, Lee CS, Lee AY | Progress in retinal and eye research | 40360070 | Prog Retin Eye Res | 2025 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40360070 |
| Publicly available imaging datasets for age-related macular degeneration: Evaluation according to the Findable, Accessible, Interoperable, Reusable (FAIR) principles. | Gim N, Ferguson A, Blazes M, Soundarajan S, Gasimova A, Jiang Y, Sánchez CI, Zalunardo L, Corradetti G, Elze T, Honda N, Waheed NK, Cairns AM, Canto-Soler MV, Domalpally A, Durbin M, Ferrara D, Hu J, Nair P, Lee AY, Sadda SR, Keenan TDL, Patel B, Lee CS, Ryan Initiative For Macular Research (RIMR) Consortium | Experimental eye research | 40089134 | Exp Eye Res | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40089134 |
| Large language models in ophthalmology: a scoping review on their utility for clinicians, researchers, patients, and educators. | Artiaga JCM, Guevarra MCB, Sosuan GMN, Agnihotri AP, Nagel ID, Kalaw FGP | Eye (London, England) | 40855372 | Eye (Lond) | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40855372 |
| ARTIFICIAL INTELLIGENCE FOR OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY-BASED DISEASE ACTIVITY PREDICTION IN AGE-RELATED MACULAR DEGENERATION. | Heinke A, Zhang H, Deussen D, Galang CMB, Warter A, Kalaw FGP, Bartsch DG, Cheng L, An C, Nguyen T, Freeman WR | Retina (Philadelphia, Pa.) | 37988102 | Retina | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/37988102 |
| Large language models and their impact in ophthalmology. | Betzler BK, Chen H, Cheng CY, Lee CS, Ning G, Song SJ, Lee AY, Kawasaki R, van Wijngaarden P, Grzybowski A, He M, Li D, Ran Ran A, Ting DSW, Teo K, Ruamviboonsuk P, Sivaprasad S, Chaudhary V, Tadayoni R, Wang X, Cheung CY, Zheng Y, Wang YX, Tham YC, Wong TY | The Lancet. Digital health | 38000875 | Lancet Digit Health | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38000875 |
| Microperimetry Findings in Pentosan Polysulfate Maculopathy. | Most J, Kalaw FGP, Walker E, Arias JD, Charng J, Baxter SL, Nudleman E, Ferreyra H, Freeman WR, Chen FK, Borooah S | Ophthalmology. Retina | 37619623 | Ophthalmol Retina | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37619623 |
| Barriers to Extracting and Harmonizing Glaucoma Testing Data: Gaps, Shortcomings, and the Pursuit of FAIRness. | Radgoudarzi N, Hallaj S, Boland MV, Stagg B, Wang SY, Xu B, Swaminathan SS, Brown EN, Chen A, Sun CQ, Amarasekera DC, Myers JS, Saifee M, Halfpenny W, Dirkes K, Zangwill L, Goetz KE, Hribar M, Baxter SL | Ophthalmology science | 39429240 | Ophthalmol Sci | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39429240 |
| Retinal Vessel Plexus Differentiation Based on OCT Angiography Using Deep Learning. | Shaffer JL, De Sisternes L, Rajesh AE, Blazes MS, Kihara Y, Lee CS, Lewis WH, Goldberg RA, Manivannan N, Lee AY | Ophthalmology science | 39624795 | Ophthalmol Sci | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39624795 |
| Deep Learning to Predict the Future Growth of Geographic Atrophy from Fundus Autofluorescence. | Salvi A, Cluceru J, Gao SS, Rabe C, Schiffman C, Yang Q, Lee AY, Keane PA, Sadda SR, Holz FG, Ferrara D, Anegondi N | Ophthalmology science | 39758130 | Ophthalmol Sci | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/39758130 |
| Developing a 10-Layer Retinal Segmentation for MacTel Using Semi-Supervised Learning. | Verma A, Tzaridis S, Blazes M, Friedlander M, Lee AY, Wu Y | Translational vision science & technology | 39499591 | Transl Vis Sci Technol | 2024 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/39499591 |
| Foundation models in ophthalmology. | Chia MA, Antaki F, Zhou Y, Turner AW, Lee AY, Keane PA | The British journal of ophthalmology | 38834291 | Br J Ophthalmol | 2024 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/38834291 |
| Outer Retinal Thinning is Associated With Brain Atrophy in Early Age-Related Macular Degeneration. | Jiang Y, Swain T, Gim N, Blazes M, Donald CM, Rokem A, Owen JP, Balu N, Clark ME, Goerdt L, McGwin G, Hunt D, Curcio CA, Levendovszky SR, Trittschuh EH, Owsley C, Lee CS | American journal of ophthalmology | 39369929 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39369929 |
| RETINAL STRUCTURAL CHANGES AFTER CESSATION OF PENTOSAN POLYSULFATE SODIUM. | Kalaw FGP, Most J, Kako RN, Sharma P, Arias JD, Chen JS, Lin AC, Walker E, Bartsch DG, Baxter SL, Ferreyra H, Freeman WR, Borooah S | Retina (Philadelphia, Pa.) | 39174300 | Retina | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39174300 |
| Ethical considerations for large language models in ophthalmology. | Kalaw FGP, Baxter SL | Current opinion in ophthalmology | 39259616 | Curr Opin Ophthalmol | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39259616 |
| Faricimab at 6 and 12 mg reduces pigment epithelium detachment in treatment-resistant macular neovascularization: an OCT and AI analysis. | Nagel ID, Tran MD, Zhang H, Cheng L, Heinke A, Mehta NN, Bartsch DU, Kalaw FGP, Morsy M, Mueller AJ, Freeman WR | Scientific reports | 41028859 | Sci Rep | 2025 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/41028859 |
| Associations Between Physical Activity and Glaucoma: Analysis of the National Institutes of Health All of Us Research Program. | Akarapimand P, Hallaj S, Weinreb RN, Baxter SL | Journal of glaucoma | 41370653 | J Glaucoma | 2026 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/41370653 |
| A Manual of Procedures for the Generation of the AI-Ready and Exploratory Atlas for Diabetes Insights (AI-READI) Database. | Matthies DS, Edberg JC, Baxter SL, Lee AY, Lee CS, McGwin G Jr, Owen JP, Zangwill LM, Owsley C | medRxiv : the preprint server for health sciences | 41959775 | medRxiv | 2026 Apr 4 | https://www.ncbi.nlm.nih.gov/pubmed/41959775 |
