Bridge to Artificial Intelligence (Bridge2AI)
Bridge to Artificial Intelligence (Bridge2AI)
Program Publications
Publications Search by Program
Search Results
The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date | PubMedLink |
|---|---|---|---|---|---|---|
| NFTest: automated testing of Nextflow pipelines. | Patel Y, Zhu C, Yamaguchi TN, Bugh YZ, Tian M, Holmes A, Fitz-Gibbon ST, Boutros PC | Bioinformatics (Oxford, England) | 38341660 | Bioinformatics | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/38341660 |
| Best practices to evaluate the impact of biomedical research software-metric collection beyond citations. | Afiaz A, Ivanov AA, Chamberlin J, Hanauer D, Savonen CL, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C | Bioinformatics (Oxford, England) | 39067017 | Bioinformatics | 2024 Aug 2 | https://www.ncbi.nlm.nih.gov/pubmed/39067017 |
| AI-readiness for Biomedical Data: Bridge2AI Recommendations. | Clark T, Caufield H, Parker JA, Al Manir S, Amorim E, Eddy J, Gim N, Gow B, Goar W, Haendel M, Hansen JN, Harris N, Hermjakob H, Joachimiak M, Jordan G, Lee IH, McWeeney SK, Nebeker C, Nikolov M, Shaffer J, Sheffield N, Sheynkman G, Stevenson J, Chen JY, Mungall C, Wagner A, Kong SW, Ghosh SS, Patel B, Williams A, Munoz-Torres MC | bioRxiv : the preprint server for biology | 39484409 | bioRxiv | 2024 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/39484409 |
| Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets. | Ellrott K, Wong CK, Yau C, Castro MAA, Lee JA, Karlberg BJ, Grewal JK, Lagani V, Tercan B, Friedl V, Hinoue T, Uzunangelov V, Westlake L, Loinaz X, Felau I, Wang PI, Kemal A, Caesar-Johnson SJ, Shmulevich I, Lazar AJ, Tsamardinos I, Hoadley KA, Cancer Genome Atlas Analysis Network, Robertson AG, Knijnenburg TA, Benz CC, Stuart JM, Zenklusen JC, Cherniack AD, Laird PW | Cancer cell | 39753139 | Cancer Cell | 2025 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/39753139 |
| Aggregating multimodal cancer data across unaligned embedding spaces maintains tumor of origin signal. | Kirchgaessner R, Keutler K, Sivakumar L, Song X, Ellrott K | bioRxiv : the preprint server for biology | 40462901 | bioRxiv | 2025 May 18 | https://www.ncbi.nlm.nih.gov/pubmed/40462901 |
| Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction. | Salcedo A, Tarabichi M, Buchanan A, Espiritu SMG, Zhang H, Zhu K, Ou Yang TH, Leshchiner I, Anastassiou D, Guan Y, Jang GH, Mootor MFE, Haase K, Deshwar AG, Zou W, Umar I, Dentro S, Wintersinger JA, Chiotti K, Demeulemeester J, Jolly C, Sycza L, Ko M, PCAWG Evolution and Heterogeneity Working Group, SMC-Het Participants, Wedge DC, Morris QD, Ellrott K, Van Loo P, Boutros PC | Nature biotechnology | 38862616 | Nat Biotechnol | 2025 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38862616 |
| A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material. | Daniels CA, Abdulkadir A, Cleveland MH, McDaniel JH, Jáspez D, Rubio-Rodríguez LA, Muñoz-Barrera A, Lorenzo-Salazar JM, Flores C, Yoo B, Sahraeian SME, Wang Y, Rossi M, Visvanath A, Murray L, Chen WT, Catreux S, Han J, Mehio R, Parnaby G, Carroll A, Chang PC, Shafin K, Cook D, Kolesnikov A, Brambrink L, Mootor MFE, Patel Y, Yamaguchi TN, Boutros PC, Sienkiewicz K, Foox J, Mason CE, Lajoie BR, Ruiz-Perez CA, Kruglyak S, Zook JM, Olson ND | bioRxiv : the preprint server for biology | 39677813 | bioRxiv | 2024 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/39677813 |
| Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow Pipeline. | Patel Y, Zhu C, Yamaguchi TN, Wang NK, Wiltsie N, Zeltser N, Gonzalez AE, Winata HK, Pan Y, Mootor MFE, Sanders T, Fitz-Gibbon ST, Kandoth C, Livingstone J, Liu LY, Carlin B, Holmes A, Oh J, Sahrmann J, Tao S, Eng S, Hugh-White R, Pashminehazar K, Park A, Beshlikyan A, Jordan M, Wu S, Tian M, Arbet J, Neilsen B, Haas R, Bugh YZ, Kim G, Salmingo J, Zhang W, Anand A, Hwang E, Neiman-Golden A, Steinberg P, Zhao W, Anand P, Agrawal R, Tsai BL, Boutros PC | bioRxiv : the preprint server for biology | 39282325 | bioRxiv | 2025 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/39282325 |
| Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? | Afiaz A, Ivanov AA, Chamberlin J, Hanauer D, Savonen CL, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C | ArXiv | 37332562 | ArXiv | 2023 Jun 5 | https://www.ncbi.nlm.nih.gov/pubmed/37332562 |
| Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms. | Steinberg PL, Liu LY, Neiman-Golden A, Patel Y, Boutros PC | bioRxiv : the preprint server for biology | 38370678 | bioRxiv | 2024 Feb 8 | https://www.ncbi.nlm.nih.gov/pubmed/38370678 |
| Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundation Models. | Sankar BS, Gilliland D, Rincon J, Hermjakob H, Yan Y, Adam I, Lemaster G, Wang D, Watson K, Bui A, Wang W, Ping P | Bioengineering (Basel, Switzerland) | 39451360 | Bioengineering (Basel) | 2024 Sep 29 | https://www.ncbi.nlm.nih.gov/pubmed/39451360 |
| PipeVal: light-weight extensible tool for file validation. | Patel Y, Beshlikyan A, Jordan M, Kim G, Holmes A, Yamaguchi TN, Boutros PC | Bioinformatics (Oxford, England) | 38341658 | Bioinformatics | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/38341658 |
| Health Equity and Artificial Intelligence in Nephrology. | Engel Hercz A, Nicholas SB, Bui AAT, Norris KC | Clinical journal of the American Society of Nephrology : CJASN | 39874085 | Clin J Am Soc Nephrol | 2025 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/39874085 |
| Discordance between a deep learning model and clinical-grade variant pathogenicity classification in a rare disease cohort. | Kong SW, Lee IH, Collen LV, Field M, Manrai AK, Snapper SB, Mandl KD | NPJ genomic medicine | 40021654 | NPJ Genom Med | 2025 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/40021654 |
| Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. | Clark T, Mohan J, Schaffer L, Obernier K, Al Manir S, Churas CP, Dailamy A, Doctor Y, Forget A, Hansen JN, Hu M, Lenkiewicz J, Levinson MA, Marquez C, Nourreddine S, Niestroy J, Pratt D, Qian G, Thaker S, Bélisle-Pipon JC, Brandt C, Chen J, Ding Y, Fodeh S, Krogan N, Lundberg E, Mali P, Payne-Foster P, Ratcliffe S, Ravitsky V, Sali A, Schulz W, Ideker T | bioRxiv : the preprint server for biology | 38826258 | bioRxiv | 2024 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/38826258 |
| BOSC 2023, the 24th annual Bioinformatics Open Source Conference. | Harris NL, Fields CJ, Hokamp K, Just J, Khetani R, Maia J, Ménager H, Munoz-Torres MC, Unni D, Williams J | F1000Research | 38076297 | F1000Res | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38076297 |
| Quorum-based model learning on a blockchain hierarchical clinical research network using smart contracts. | Kuo TT, Pham A | International journal of medical informatics | 36402113 | Int J Med Inform | 2023 Jan | https://www.ncbi.nlm.nih.gov/pubmed/36402113 |
| Predicting multiple sclerosis severity with multimodal deep neural networks. | Zhang K, Lincoln JA, Jiang X, Bernstam EV, Shams S | BMC medical informatics and decision making | 37946182 | BMC Med Inform Decis Mak | 2023 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/37946182 |
| Using Natural Language Processing to Predict Fatal Drug Overdose From Autopsy Narrative Text: Algorithm Development and Validation Study. | Tang LA, Korona-Bailey J, Zaras D, Roberts A, Mukhopadhyay S, Espy S, Walsh CG | JMIR public health and surveillance | 37204824 | JMIR Public Health Surveill | 2023 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/37204824 |
| Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. | Kuo TT, Pham A, Edelson ME, Kim J, Chan J, Gupta Y, Ohno-Machado L, R2D2 Consortium | Journal of the American Medical Informatics Association : JAMIA | 36916740 | J Am Med Inform Assoc | 2023 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/36916740 |
| De-identification is not enough: a comparison between de-identified and synthetic clinical notes. | Sarkar AR, Chuang YS, Mohammed N, Jiang X | Scientific reports | 39613846 | Sci Rep | 2024 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/39613846 |
| Factors Influencing Informed Consent Preferences in Digital Health Research: Survey Study of Prospective Participants. | McInnis BJ, Pindus R, Kareem D, Vital DG, Hekler EB, Nebeker C | Journal of medical Internet research | 39847412 | J Med Internet Res | 2025 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/39847412 |
| Using dataflow diagrams to support research informed consent data management communications: participant perspectives. | McInnis BJ, Pindus R, Kareem DH, Cakici J, Vital DG, Hekler E, Nebeker C | Journal of the American Medical Informatics Association : JAMIA | 39903169 | J Am Med Inform Assoc | 2025 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/39903169 |
| Robust privacy amidst innovation with large language models through a critical assessment of the risks. | Chuang YS, Sarkar AR, Hsu YC, Mohammed N, Jiang X | Journal of the American Medical Informatics Association : JAMIA | 40112189 | J Am Med Inform Assoc | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/40112189 |
| Longitudinal Analysis of Electronic Health Records Reveals Medical Conditions Associated with Subsequent Alzheimer's Disease Development. | Zhong X, Jia G, Yin Z, Cheng K, Rzhetsky A, Li B, Cox NJ | medRxiv : the preprint server for health sciences | 40196258 | medRxiv | 2025 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/40196258 |
| Rural Medical Centers Struggle to Produce Well-Calibrated Clinical Prediction Models: Data Augmentation Can Help. | Brown KE, Malin BA, Davis SE | medRxiv : the preprint server for health sciences | 40585177 | medRxiv | 2025 Jun 17 | https://www.ncbi.nlm.nih.gov/pubmed/40585177 |
| Computational strategic recruitment for representation and coverage studied in the All of Us Research Program. | Borza VA, Chen Q, Clayton EW, Kantarcioglu M, Sulieman L, Vorobeychik Y, Malin BA | NPJ digital medicine | 40610586 | NPJ Digit Med | 2025 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/40610586 |
| Enhancing fairness in disease prediction by optimizing multiple domain adversarial networks. | Li B, Jiang X, Zhang K, Harmanci AO, Malin B, Gao H, Shi X, Alzheimer’s Disease Neuroimaging Initiative | PLOS digital health | 40445951 | PLOS Digit Health | 2025 May | https://www.ncbi.nlm.nih.gov/pubmed/40445951 |
| Fact Check: Assessing the Response of ChatGPT to Alzheimer's Disease Statements with Varying Degrees of Misinformation. | Huang SS, Song Q, Beiting KJ, Duggan MC, Hines K, Murff H, Leung V, Powers J, Harvey TS, Malin B, Yin Z | medRxiv : the preprint server for health sciences | 37745352 | medRxiv | 2023 Sep 7 | https://www.ncbi.nlm.nih.gov/pubmed/37745352 |
| SPeC: A Soft Prompt-Based Calibration on Performance Variability of Large Language Model in Clinical Notes Summarization. | Chuang YN, Tang R, Jiang X, Hu X | Journal of biomedical informatics | 38325698 | J Biomed Inform | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38325698 |
| Sensitive Data Detection with High-Throughput Machine Learning Models in Electrical Health Records. | Zhang K, Jiang X | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222389 | AMIA Annu Symp Proc | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38222389 |
| Human-Centered Design to Address Biases in Artificial Intelligence. | Chen Y, Clayton EW, Novak LL, Anders S, Malin B | Journal of medical Internet research | 36961506 | J Med Internet Res | 2023 Mar 24 | https://www.ncbi.nlm.nih.gov/pubmed/36961506 |
| Not the Models You Are Looking For: Traditional ML Outperforms LLMs in Clinical Prediction Tasks. | Brown KE, Yan C, Li Z, Zhang X, Collins BX, Chen Y, Clayton EW, Kantarcioglu M, Vorobeychik Y, Malin BA | medRxiv : the preprint server for health sciences | 39677419 | medRxiv | 2024 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/39677419 |
| Addressing ethical issues in healthcare artificial intelligence using a lifecycle-informed process. | Collins BX, Bélisle-Pipon JC, Evans BJ, Ferryman K, Jiang X, Nebeker C, Novak L, Roberts K, Were M, Yin Z, Ravitsky V, Coco J, Hendricks-Sturrup R, Williams I, Clayton EW, Malin BA, Bridge2AI Ethics and Trustworthy AI Working Group | JAMIA open | 39553826 | JAMIA Open | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39553826 |
| Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review. | Lacson R, Yu Y, Kuo TT, Ohno-Machado L | Journal of the American Medical Informatics Association : JAMIA | 38726710 | J Am Med Inform Assoc | 2024 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/38726710 |
| Optimized Risk Score to Predict Mortality in Patients With Cardiogenic Shock in the Cardiac Intensive Care Unit. | Yamga E, Mantena S, Rosen D, Bucholz EM, Yeh RW, Celi LA, Ustun B, Butala NM | Journal of the American Heart Association | 37345819 | J Am Heart Assoc | 2023 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/37345819 |
| Guiding Principles to Address the Impact of Algorithm Bias on Racial and Ethnic Disparities in Health and Health Care. | Chin MH, Afsar-Manesh N, Bierman AS, Chang C, Colón-Rodríguez CJ, Dullabh P, Duran DG, Fair M, Hernandez-Boussard T, Hightower M, Jain A, Jordan WB, Konya S, Moore RH, Moore TT, Rodriguez R, Shaheen G, Snyder LP, Srinivasan M, Umscheid CA, Ohno-Machado L | JAMA network open | 38100101 | JAMA Netw Open | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/38100101 |
| Distributed cross-learning for equitable federated models - privacy-preserving prediction on data from five California hospitals. | Kuo TT, Gabriel RA, Koola J, Schooley RT, Ohno-Machado L | Nature communications | 39910076 | Nat Commun | 2025 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/39910076 |
| A Multifaceted benchmarking of synthetic electronic health record generation models. | Yan C, Yan Y, Wan Z, Zhang Z, Omberg L, Guinney J, Mooney SD, Malin BA | Nature communications | 36494374 | Nat Commun | 2022 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/36494374 |
| Ensuring Trust in Genomics Research. | Ayday E, Vaidya J, Jiang X, Telenti A | ... IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications : (TPS-ISA ...). IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications | 38562180 | IEEE Int Conf Trust Priv Secur Intell Syst Appl | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/38562180 |
| Guidance for unbiased predictive information for healthcare decision-making and equity (GUIDE): considerations when race may be a prognostic factor. | Ladin K, Cuddeback J, Duru OK, Goel S, Harvey W, Park JG, Paulus JK, Sackey J, Sharp R, Steyerberg E, Ustun B, van Klaveren D, Weingart SN, Kent DM | NPJ digital medicine | 39427028 | NPJ Digit Med | 2024 Oct 19 | https://www.ncbi.nlm.nih.gov/pubmed/39427028 |
| Large language models are less effective at clinical prediction tasks than locally trained machine learning models. | Brown KE, Yan C, Li Z, Zhang X, Collins BX, Chen Y, Clayton EW, Kantarcioglu M, Vorobeychik Y, Malin BA | Journal of the American Medical Informatics Association : JAMIA | 40056436 | J Am Med Inform Assoc | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/40056436 |
| Federated Multiple Imputation for Variables that Are Missing Not At Random in Distributed Electronic Health Records. | Lian Y, Jiang X, Long Q | AMIA ... Annual Symposium proceedings. AMIA Symposium | 40417515 | AMIA Annu Symp Proc | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/40417515 |
| A comparative atlas of single-cell chromatin accessibility in the human brain. | Li YE, Preissl S, Miller M, Johnson ND, Wang Z, Jiao H, Zhu C, Wang Z, Xie Y, Poirion O, Kern C, Pinto-Duarte A, Tian W, Siletti K, Emerson N, Osteen J, Lucero J, Lin L, Yang Q, Zhu Q, Zemke N, Espinoza S, Yanny AM, Nyhus J, Dee N, Casper T, Shapovalova N, Hirschstein D, Hodge RD, Linnarsson S, Bakken T, Levi B, Keene CD, Shang J, Lein E, Wang A, Behrens MM, Ecker JR, Ren B | Science (New York, N.Y.) | 37824643 | Science | 2023 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/37824643 |
| Split Learning for Distributed Collaborative Training of Deep Learning Models in Health Informatics. | Li Z, Yan C, Zhang X, Gharibi G, Yin Z, Jiang X, Malin BA | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222326 | AMIA Annu Symp Proc | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38222326 |
| Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial Networks. | Li B, Shi X, Gao H, Jiang X, Zhang K, Harmanci AO, Malin B | bioRxiv : the preprint server for biology | 37609241 | bioRxiv | 2023 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/37609241 |
| Deep learning to predict rapid progression of Alzheimer's disease from pooled clinical trials: A retrospective study. | Ma X, Shyer M, Harris K, Wang D, Hsu YC, Farrell C, Goodwin N, Anjum S, Bukhbinder AS, Dean S, Khan T, Hunter D, Schulz PE, Jiang X, Kim Y | PLOS digital health | 38598464 | PLOS Digit Health | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38598464 |
| Large Language Models for Healthcare Data Augmentation: An Example on Patient-Trial Matching. | Yuan J, Tang R, Jiang X, Hu X | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222339 | AMIA Annu Symp Proc | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/38222339 |
| FERI: A Multitask-based Fairness Achieving Algorithm with Applications to Fair Organ Transplantation. | Li C, Lai D, Jiang X, Zhang K | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science | 38827050 | AMIA Jt Summits Transl Sci Proc | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38827050 |
| Digital Information Ecosystems in Modern Care Coordination and Patient Care Pathways and the Challenges and Opportunities for AI Solutions. | Chen Y, Lehmann CU, Malin B | Journal of medical Internet research | 39622048 | J Med Internet Res | 2024 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/39622048 |
| Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation. | Ford K, Munson BP, Fong SH, Panwala R, Chu WK, Rainaldi J, Plongthongkum N, Arunachalam V, Kostrowicki J, Meluzzi D, Kreisberg JF, Jensen-Pergakes K, VanArsdale T, Paul T, Tamayo P, Zhang K, Bienkowska J, Mali P, Ideker T | Scientific reports | 37169829 | Sci Rep | 2023 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/37169829 |
| Systematic discovery of transcription factors that improve hPSC-derived cardiomyocyte maturation via temporal analysis of bioengineered cardiac tissues. | Kumar A, He S, Mali P | APL bioengineering | 37252678 | APL Bioeng | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37252678 |
| De novo generation of multi-target compounds using deep generative chemistry. | Munson BP, Chen M, Bogosian A, Kreisberg JF, Licon K, Abagyan R, Kuenzi BM, Ideker T | Nature communications | 38710699 | Nat Commun | 2024 May 6 | https://www.ncbi.nlm.nih.gov/pubmed/38710699 |
| FAIRSCAPE: An Evolving AI-readiness Framework for Biomedical Research. | Al Manir S, Levinson MA, Niestroy J, Churas C, Parker JA, Clark T | bioRxiv : the preprint server for biology | 39763764 | bioRxiv | 2025 May 6 | https://www.ncbi.nlm.nih.gov/pubmed/39763764 |
| Generative AI, Specific Moral Values: A Closer Look at ChatGPT's New Ethical Implications for Medical AI. | Victor G, Bélisle-Pipon JC, Ravitsky V | The American journal of bioethics : AJOB | 37812098 | Am J Bioeth | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37812098 |
| Individuals and (Synthetic) Data Points: Using Value-Sensitive Design to Foster Ethical Deliberations on Epistemic Transitions. | Bélisle-Pipon JC, Ravitsky V, Bridge2AI-Voice Consortium, Bensoussan Y | The American journal of bioethics : AJOB | 37647464 | Am J Bioeth | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37647464 |
| The Hallmarks of Predictive Oncology. | Singhal A, Zhao X, Wall P, So E, Calderini G, Partin A, Koussa N, Vasanthakumari P, Narykov O, Zhu Y, Jones SE, Abbas-Aghababazadeh F, Kadambat Nair S, Bélisle-Pipon JC, Jayaram A, Parker BA, Yeung KT, Griffiths JI, Weil R, Nath A, Haibe-Kains B, Ideker T | Cancer discovery | 39760657 | Cancer Discov | 2025 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/39760657 |
| Evaluation of large language models for discovery of gene set function. | Hu M, Alkhairy S, Lee I, Pillich RT, Fong D, Smith K, Bachelder R, Ideker T, Pratt D | Nature methods | 39609565 | Nat Methods | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39609565 |
| How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities. | Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR | ArXiv | 39398201 | ArXiv | 2024 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/39398201 |
| Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes. | Cesnik A, Schaffer LV, Gaur I, Jain M, Ideker T, Lundberg E | Annual review of biomedical data science | 38748859 | Annu Rev Biomed Data Sci | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38748859 |
| Charting and probing the activity of ADARs in human development and cell-fate specification. | Dailamy A, Lyu W, Nourreddine S, Tong M, Rainaldi J, McDonald D, Panwala R, Muotri A, Breen MS, Zhang K, Mali P | Nature communications | 39537590 | Nat Commun | 2024 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/39537590 |
| A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS. | Nourreddine S, Doctor Y, Dailamy A, Forget A, Lee YH, Chinn B, Khaliq H, Polacco B, Muralidharan M, Pan E, Zhang Y, Sigaeva A, Hansen JN, Gao J, Parker JA, Obernier K, Clark T, Chen JY, Metallo C, Lundberg E, Ideker T, Krogan N, Mali P | bioRxiv : the preprint server for biology | 39574586 | bioRxiv | 2024 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/39574586 |
| Interface-guided phenotyping of coding variants in the transcription factor RUNX1. | Ozturk K, Panwala R, Sheen J, Ford K, Jayne N, Portell A, Zhang DE, Hutter S, Haferlach T, Ideker T, Mali P, Carter H | Cell reports | 38968069 | Cell Rep | 2024 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/38968069 |
| Investigating the Influence of Artificial Intelligence on Adolescent Health: An Urgent Call to Action. | Brisson J, Bélisle-Pipon JC, Ravitsky V | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 37716717 | J Adolesc Health | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37716717 |
| A multi-scale map of protein assemblies in the DNA damage response. | Kratz A, Kim M, Kelly MR, Zheng F, Koczor CA, Li J, Ono K, Qin Y, Churas C, Chen J, Pillich RT, Park J, Modak M, Collier R, Licon K, Pratt D, Sobol RW, Krogan NJ, Ideker T | Cell systems | 37220749 | Cell Syst | 2023 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/37220749 |
| RNA editing: Expanding the potential of RNA therapeutics. | Booth BJ, Nourreddine S, Katrekar D, Savva Y, Bose D, Long TJ, Huss DJ, Mali P | Molecular therapy : the journal of the American Society of Gene Therapy | 36620962 | Mol Ther | 2023 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/36620962 |
| Discovery and significance of protein-protein interactions in health and disease. | Greenblatt JF, Alberts BM, Krogan NJ | Cell | 39547210 | Cell | 2024 Nov 14 | https://www.ncbi.nlm.nih.gov/pubmed/39547210 |
| Multimodal cell maps as a foundation for structural and functional genomics. | Schaffer LV, Hu M, Qian G, Moon KM, Pal A, Soni N, Latham AP, Pontano Vaites L, Tsai D, Mattson NM, Licon K, Bachelder R, Cesnik A, Gaur I, Le T, Leineweber W, Palar A, Pulido E, Qin Y, Zhao X, Churas C, Lenkiewicz J, Chen J, Ono K, Pratt D, Zage P, Echeverria I, Sali A, Harper JW, Gygi SP, Foster LJ, Huttlin EL, Lundberg E, Ideker T | Nature | 40205054 | Nature | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40205054 |
| Cell Mapping Toolkit: an end-to-end pipeline for mapping subcellular organization. | Lenkiewicz J, Churas C, Hu M, Qian G, Jain M, Levinson MA, Al Manir S, Qin Y, Fong D, Ono K, Chen J, Gao C, Pratt D, Parker JA, Clark T, Ideker T, Schaffer LV | Bioinformatics (Oxford, England) | 40489639 | Bioinformatics | 2025 Jun 2 | https://www.ncbi.nlm.nih.gov/pubmed/40489639 |
| Mondrian Abstraction and Language Model Embeddings for Differential Pathway Analysis. | Al Abir F, Chen JY | bioRxiv : the preprint server for biology | 38659966 | bioRxiv | 2024 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/38659966 |
| Evaluation of large language models for discovery of gene set function. | Hu M, Alkhairy S, Lee I, Pillich RT, Bachelder R, Ideker T, Pratt D | Research square | 37790547 | Res Sq | 2023 Sep 18 | https://www.ncbi.nlm.nih.gov/pubmed/37790547 |
| Commentary: Implications of causality in artificial intelligence. Why Causal AI is easier said than done. | Bélisle-Pipon JC | Frontiers in artificial intelligence | 39911917 | Front Artif Intell | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/39911917 |
| How to build the virtual cell with artificial intelligence: Priorities and opportunities. | Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR | Cell | 39672099 | Cell | 2024 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/39672099 |
| Multi-modal contrastive learning of subcellular organization using DICE. | Nasser R, Schaffer LV, Ideker T, Sharan R | Bioinformatics (Oxford, England) | 39230695 | Bioinformatics | 2024 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/39230695 |
| Robust genome and cell engineering via in vitro and in situ circularized RNAs. | Tong M, Palmer N, Dailamy A, Kumar A, Khaliq H, Han S, Finburgh E, Wing M, Hong C, Xiang Y, Miyasaki K, Portell A, Rainaldi J, Suhardjo A, Nourreddine S, Chew WL, Kwon EJ, Mali P | Nature biomedical engineering | 39187662 | Nat Biomed Eng | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39187662 |
| A Manual for Genome and Transcriptome Engineering. | Doctor Y, Sanghvi M, Mali P | IEEE reviews in biomedical engineering | 39514364 | IEEE Rev Biomed Eng | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/39514364 |
| A primer for quantum computing and its applications to healthcare and biomedical research. | Durant TJS, Knight E, Nelson B, Dudgeon S, Lee SJ, Walliman D, Young HP, Ohno-Machado L, Schulz WL | Journal of the American Medical Informatics Association : JAMIA | 38934288 | J Am Med Inform Assoc | 2024 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/38934288 |
| Evaluation of large language models for discovery of gene set function. | Hu M, Alkhairy S, Lee I, Pillich RT, Fong D, Smith K, Bachelder R, Ideker T, Pratt D | ArXiv | 37731657 | ArXiv | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/37731657 |
| Putting proteins in context. | Hu M, Ideker T | Cell systems | 39418999 | Cell Syst | 2024 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/39418999 |
| A genotype-to-drug diffusion model for generation of tailored anti-cancer small molecules. | Kim H, Bae B, Park M, Shin Y, Ideker T, Nam H | Nature communications | 40593549 | Nat Commun | 2025 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/40593549 |
| Cell shapes decode molecular phenotypes in image-based spatial proteomics. | Le T, Leineweber WD, Viana MP, Cesnik A, Hansen JN, Ouyang W, Rafelski SM, Lundberg E | bioRxiv : the preprint server for biology | 40463127 | bioRxiv | 2025 May 16 | https://www.ncbi.nlm.nih.gov/pubmed/40463127 |
| Quantification of Automatic Speech Recognition System Performance on d/Deaf and Hard of Hearing Speech. | Zhao R, Choi ASG, Koenecke A, Rameau A | The Laryngoscope | 39157956 | Laryngoscope | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39157956 |
| Virtual Reality for Pain Management During High-Resolution Manometry: A Randomized Clinical Trial. | Palte I, Stewart S, Rives H, Curtis JA, Enver N, Tritter A, Andreadis K, Mocchetti V, Schnoll-Sussman F, Soumekh A, Zarnegar R, Katz P, Rameau A | The Laryngoscope | 37497865 | Laryngoscope | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37497865 |
| Current Practices in Voice Data Collection and Limitations to Voice AI Research: A National Survey. | Evangelista E, Kale R, McCutcheon D, Rameau A, Gelbard A, Powell M, Johns M, Law A, Song P, Naunheim M, Watts S, Bryson PC, Crowson MG, Pinto J, Bridge2AI-Voice, Bensoussan Y | The Laryngoscope | 38087983 | Laryngoscope | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38087983 |
| Using Generative Artificial Intelligence in the Production and Dissemination of Innovation in Otolaryngology-Ethical Considerations. | Khoury CJ, Enver N, Paderno A, Ratti E, Rameau A | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38044483 | Otolaryngol Head Neck Surg | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38044483 |
| New developments in the application of artificial intelligence to laryngology. | Torborg SR, Kim AYE, Rameau A | Current opinion in otolaryngology & head and neck surgery | 39146248 | Curr Opin Otolaryngol Head Neck Surg | 2024 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/39146248 |
| Large Language Model Versus Human-Generated Thematic Analysis in Otolaryngology Qualitative Research. | Morse E, Li A, Albert S, Harpel L, Rameau A | The Laryngoscope | 39494819 | Laryngoscope | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39494819 |
| Developing a mobile application for gender-affirming voice training: A community-engaged approach. | Alter IL, Chadwick KA, Andreadis K, Coleman R, Pitti M, Ezell JM, Rameau A | Laryngoscope investigative otolaryngology | 39679168 | Laryngoscope Investig Otolaryngol | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39679168 |
| Eating and swallowing care disparities in persons with dementia: A conceptual framework. | Loy RD, Rogus-Pulia N, Ketchum F, Troche M, Rameau A, Jones HN, Riquelme L, Gilmore-Bykovskyi A, Shah MN, Kind A | Alzheimer's & dementia : the journal of the Alzheimer's Association | 40008923 | Alzheimers Dement | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/40008923 |
| A Novel Low-Cost, Open-Source, Three-Dimensionally Printed Thyroplasty Simulator. | Kostas JC, Lee M, Rameau A | Journal of voice : official journal of the Voice Foundation | 38036381 | J Voice | 2023 Nov 29 | https://www.ncbi.nlm.nih.gov/pubmed/38036381 |
| Female Surgical Ergonomics in Otolaryngology: A National Survey Study. | Morse E, Tai K, Harpel L, Born H, Krishna P, Rameau A | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 37890071 | Otolaryngol Head Neck Surg | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37890071 |
| Artificial Intelligence Governance and Otolaryngology-Head and Neck Surgery. | Nwosu OI, Crowson MG, Rameau A | The Laryngoscope | 37658749 | Laryngoscope | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37658749 |
| Correlations Between Anxiety and/or Depression Diagnoses and Dysphagia Severity. | Doruk C, Mocchetti V, Rives H, Christos P, Rameau A | The Laryngoscope | 37942834 | Laryngoscope | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/37942834 |
| Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews and meta-analyses. | Zavalis EA, Rameau A, Saraswathula A, Vist J, Schuit E, Ioannidis JP | BMJ open | 38195174 | BMJ Open | 2024 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/38195174 |
| ADGR: Admixture-Informed Differential Gene Regulation. | Lee IH, Kong SW | Genes | 36672888 | Genes (Basel) | 2023 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/36672888 |
| Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. | Low DM, Rao V, Randolph G, Song PC, Ghosh SS | medRxiv : the preprint server for health sciences | 33501466 | medRxiv | 2024 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/33501466 |
| Patient-Centered Equitable and Safe Artificial Intelligence in Otolaryngology-Head and Neck Surgery. | Tai K, Zhao R, Rameau A | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38943446 | Otolaryngol Head Neck Surg | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/38943446 |
| Evidence-Based Recommendations for Tablet Recordings From the Bridge2AI-Voice Acoustic Experiments. | Awan SN, Bahr R, Watts S, Boyer M, Budinsky R, Bridge2AI-Voice Consortium, Bensoussan Y | Journal of voice : official journal of the Voice Foundation | 39306498 | J Voice | 2024 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/39306498 |
| Voice Meets Swallowing: A Scoping Review of Therapeutic Connections. | Castillo-Allendes A, Searl J, Vergara J, Ballentine N, Ebdah S, Rameau A, Hunter EJ | American journal of speech-language pathology | 39772835 | Am J Speech Lang Pathol | 2025 Mar 10 | https://www.ncbi.nlm.nih.gov/pubmed/39772835 |
| Female Surgical Ergonomics in Otolaryngology: A Qualitative Study. | Morse E, Harpel L, Born H, Rameau A | The Laryngoscope | 37096670 | Laryngoscope | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37096670 |
| Development of Machine Learning Copilot to Assist Novices in Learning Flexible Laryngoscopy. | Miller ME, Witte D, Lina I, Walsh J, Rameau A, Bhatti NI | The Laryngoscope | 39363661 | Laryngoscope | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39363661 |
| Design and Usability of an Open-Source, Low-Cost Flexible Laryngoscope for Resource-Limited Settings. | Srinivasan Y, Shamritsky D, Bhatta A, Chou E, Pham T, Sanghvi Y, Woolf L, Zhang M, Odigie E, Chidziva C, Muganda E, Zimani P, de Faria N, Rameau A | JAMA otolaryngology-- head & neck surgery | 38451500 | JAMA Otolaryngol Head Neck Surg | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38451500 |
| Validity of Acoustic Measures Obtained Using Various Recording Methods Including Smartphones With and Without Headset Microphones. | Awan SN, Bahr R, Watts S, Boyer M, Budinsky R, Bridge2AI Voice Consortium, Bensoussan Y | Journal of speech, language, and hearing research : JSLHR | 38749007 | J Speech Lang Hear Res | 2024 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/38749007 |
| Voice Disorders and Hearing Loss May Be Additive Risk Factors for Depression in a National Cohort. | Rameau A, Tucker LH, Denham MW, Kang YJ, Choi N, Lachs M, Rosen TE, Stewart M, Czaja S, Golub JS | The Laryngoscope | 38804637 | Laryngoscope | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38804637 |
| Artificial Intelligence in Otolaryngology: Topics in Epistemology & Ethics. | Tai K, Zhao R, Rameau A | Otolaryngologic clinics of North America | 38839555 | Otolaryngol Clin North Am | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/38839555 |
| Concurrent Validity of a Low-Cost Manometer for Objective Assessments of Respiratory Muscle Strength. | Curtis JA, Mocchetti V, Rameau A | The Laryngoscope | 37837395 | Laryngoscope | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37837395 |
| In Response to Concurrent Validity of the IOPI and Tongueometer Orofacial Strength Measurement Devices. | Curtis JA, Mocchetti V, Rameau A | The Laryngoscope | 37905777 | Laryngoscope | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37905777 |
| Elective Surgery Trends and Outcomes of Nonagenarians and Centenarians in Otolaryngology-Head and Neck Surgery: A NSQIP Study. | Srinivasan Y, Briano J, Czaja S, Lachs MS, Rosen AE, Stewart MG, Rameau A | The Laryngoscope | 38587164 | Laryngoscope | 2024 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38587164 |
| Voice as an AI Biomarker of Health-Introducing Audiomics. | Bensoussan Y, Elemento O, Rameau A | JAMA otolaryngology-- head & neck surgery | 38386315 | JAMA Otolaryngol Head Neck Surg | 2024 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/38386315 |
| Access to Otolaryngologic Telemedicine Care Across the COVID-19 Pandemic at an Urban Tertiary Hospital System. | Srinivasan Y, Andreadis K, Ballakur SS, Rameau A | Ear, nose, & throat journal | 38488168 | Ear Nose Throat J | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38488168 |
| Validation of a 3D-Printed Percutaneous Injection Laryngoplasty Simulator: A Randomized Controlled Trial. | Kostas JC, Lee AS, Arunkumar A, Han C, Lee M, Goel AN, Alrassi J, Crosby T, Clark CM, Amin M, Abu-Ghanem S, Kirke D, Rameau A | The Laryngoscope | 37466294 | Laryngoscope | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37466294 |
| Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews. | Zavalis EA, Rameau A, Saraswathula A, Vist J, Schuit E, Ioannidis JPA | medRxiv : the preprint server for health sciences | 36778340 | medRxiv | 2023 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/36778340 |
| Validation of a Low-Cost Method for Recording and Supervising Otolaryngology Trainee Endoscopies. | Lee M, Yu M, Morse E, Rameau A | Journal of voice : official journal of the Voice Foundation | 39609221 | J Voice | 2024 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/39609221 |
| Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. | Low DM, Rao V, Randolph G, Song PC, Ghosh SS | PLOS digital health | 38814939 | PLOS Digit Health | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38814939 |
| Cough Sounds in Screening and Diagnostics: A Scoping Review. | Hegde S, Sreeram S, Alter IL, Shor C, Valdez TA, Meister KD, Rameau A | The Laryngoscope | 37672667 | Laryngoscope | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/37672667 |
| Outcomes of Gender-Affirming Voice and Communication Modification Training for Non-binary Individuals: A Case Series. | Chadwick KA, Liao D, Alter IL, Coleman R, Andreadis K, Riekki R, Waldman J, Rives H, Pitti M, Rameau A | Journal of voice : official journal of the Voice Foundation | 37673753 | J Voice | 2023 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/37673753 |
| Transformers for rapid detection of airway stenosis and stridor. | Anibal J, Doctor R, Boyer M, Newberry K, De Santiago I, Awan S, Abdel-Aty Y, Dion G, Daoud V, Huth H, Watts S, Wood BJ, Clifton D, Gelbard A, Powell M, Toghranegar J, Bridge2AI Voice Consortium, Bensoussan Y | Scientific reports | 40316652 | Sci Rep | 2025 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/40316652 |
| Practice Standards for the Use of Multimodality Neuromonitoring: A Delphi Consensus Process. | Foreman B, Kapinos G, Wainwright MS, Ngwenya LB, O'Phelan KH, LaRovere KL, Kirschen MP, Appavu B, Lazaridis C, Alkhachroum A, Maciel CB, Amorim E, Chang JJ, Gilmore EJ, Rosenthal ES, Park S | Critical care medicine | 37607072 | Crit Care Med | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37607072 |
| Minimizing bias when using artificial intelligence in critical care medicine. | Ranard BL, Park S, Jia Y, Zhang Y, Alwan F, Celi LA, Lusczek ER | Journal of critical care | 38552451 | J Crit Care | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38552451 |
| Dynamic Delirium Prediction in the Intensive Care Unit using Machine Learning on Electronic Health Records. | Contreras M, Silva B, Shickel B, Bandyopadhyay S, Guan Z, Ren Y, Ozrazgat-Baslanti T, Khezeli K, Bihorac A, Rashidi P | ... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics | 38585187 | IEEE EMBS Int Conf Biomed Health Inform | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/38585187 |
| POSTCARDS from a SIESTA: Crossing the Translational and Generalizability Gap for Predictive Models of Acute Respiratory Distress Syndrome-Related Mortality. | Wong AI, Kamaleswaran R | Critical care medicine | 37971334 | Crit Care Med | 2023 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/37971334 |
| ClotCatcher: a novel natural language model to accurately adjudicate venous thromboembolism from radiology reports. | Wang J, de Vale JS, Gupta S, Upadhyaya P, Lisboa FA, Schobel SA, Elster EA, Dente CJ, Buchman TG, Kamaleswaran R | BMC medical informatics and decision making | 37974186 | BMC Med Inform Decis Mak | 2023 Nov 16 | https://www.ncbi.nlm.nih.gov/pubmed/37974186 |
| Does diversity beget diversity? A scientometric analysis of over 150,000 studies and 49,000 authors published in high-impact medical journals between 2007 and 2022. | Charpignon ML, Matos J, Nakayama L, Gallifant J, Alfonso PGI, Cobanaj M, Fiske A, Gates AJ, Ho FDV, Jain U, Kashkooli M, McCoy LG, Shaffer J, Link Woite N, Celi LA | medRxiv : the preprint server for health sciences | 38562711 | medRxiv | 2024 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/38562711 |
| Artificial intelligence in healthcare: Opportunities come with landmines. | Iqbal U, Hsu YE, Celi LA, Li YJ | BMJ health & care informatics | 38839426 | BMJ Health Care Inform | 2024 Jun 5 | https://www.ncbi.nlm.nih.gov/pubmed/38839426 |
| Deriving Automated Device Metadata From Intracranial Pressure Waveforms: A Transforming Research and Clinical Knowledge in Traumatic Brain Injury ICU Physiology Cohort Analysis. | Ack SE, Dolmans RGF, Foreman B, Manley GT, Rosenthal ES, Zabihi M | Critical care explorations | 39016273 | Crit Care Explor | 2024 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/39016273 |
| Electronic Health Record Data Quality and Performance Assessments: Scoping Review. | Penev YP, Buchanan TR, Ruppert MM, Liu M, Shekouhi R, Guan Z, Balch J, Ozrazgat-Baslanti T, Shickel B, Loftus TJ, Bihorac A | JMIR medical informatics | 39504136 | JMIR Med Inform | 2024 Nov 6 | https://www.ncbi.nlm.nih.gov/pubmed/39504136 |
| Clinical Consequences of Disproportionate Free Valproate Elevation in Critically Ill Adult Patients: A Multicenter Retrospective Cohort Study. | Webb AJ, Gagnon DJ, Brown CS, Riker RR, Lopez ND, Goodberlet MZ, Schontz MJ, Marino KK, Zafar SF, Rosenthal ES | Neurocritical care | 40133756 | Neurocrit Care | 2025 Mar 25 | https://www.ncbi.nlm.nih.gov/pubmed/40133756 |
| Peer review of GPT-4 technical report and systems card. | Gallifant J, Fiske A, Levites Strekalova YA, Osorio-Valencia JS, Parke R, Mwavu R, Martinez N, Gichoya JW, Ghassemi M, Demner-Fushman D, McCoy LG, Celi LA, Pierce R | PLOS digital health | 38236824 | PLOS Digit Health | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38236824 |
| Testing the 'Faith Moves Mountains model' to increase Alzheimer's disease awareness, detection, and diagnosis among rural, racially, and ethnically diverse older adults. | Wiese LK, Williams IC, Holt JK, Williams CL, Lingler J, Galvin JE, Schoenberg NE | Aging & mental health | 38127408 | Aging Ment Health | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38127408 |
| Differences in Arterial Blood Gas Testing by Race and Sex across 161 U.S. Hospitals in Four Electronic Health Record Databases. | Matos J, Alwakeel M, Hao S, Naamani D, Struja T, Gichoya JW, Celi LA, McMahon T, King HA, Cox CE, Kibbe WA, Hong C, Wong AI | American journal of respiratory and critical care medicine | 40126408 | Am J Respir Crit Care Med | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40126408 |
| Building a house without foundations? A 24-country qualitative interview study on artificial intelligence in intensive care medicine. | McLennan S, Fiske A, Celi LA | BMJ health & care informatics | 38642921 | BMJ Health Care Inform | 2024 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/38642921 |
| A toolbox for surfacing health equity harms and biases in large language models. | Pfohl SR, Cole-Lewis H, Sayres R, Neal D, Asiedu M, Dieng A, Tomasev N, Rashid QM, Azizi S, Rostamzadeh N, McCoy LG, Celi LA, Liu Y, Schaekermann M, Walton A, Parrish A, Nagpal C, Singh P, Dewitt A, Mansfield P, Prakash S, Heller K, Karthikesalingam A, Semturs C, Barral J, Corrado G, Matias Y, Smith-Loud J, Horn I, Singhal K | Nature medicine | 39313595 | Nat Med | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39313595 |
| Cross-Care: Assessing the Healthcare Implications of Pre-training Data on Language Model Bias. | Chen S, Gallifant J, Gao M, Moreira P, Munch N, Muthukkumar A, Rajan A, Kolluri J, Fiske A, Hastings J, Aerts H, Anthony B, Celi LA, La Cava WG, Bitterman DS | Advances in neural information processing systems | 40313683 | Adv Neural Inf Process Syst | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/40313683 |
| Harvard Electroencephalography Database: A comprehensive clinical electroencephalographic resource from four Boston hospitals. | Sun C, Jing J, Turley N, Alcott C, Kang WY, Cole AJ, Goldenholz DM, Lam A, Amorim E, Chu C, Cash S, Junior VM, Gupta A, Ghanta M, Nearing B, Nascimento FA, Struck A, Kim J, Sartipi S, Tauton AM, Fernandes M, Sun H, Bayas G, Gallagher K, Wagenaar JB, Sinha N, Lee-Messer C, Silvers CT, Gunapati B, Rosand J, Peters J, Loddenkemper T, Lee JW, Zafar S, Westover MB | Epilepsia | 40464151 | Epilepsia | 2025 Jun 4 | https://www.ncbi.nlm.nih.gov/pubmed/40464151 |
| DF-DM: A foundational process model for multimodal data fusion in the artificial intelligence era. | Restrepo D, Wu C, Vásquez-Venegas C, Nakayama LF, Celi LA, López DM | Research square | 38746100 | Res Sq | 2024 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/38746100 |
| Efficiency and safety of high-dose undiluted intravenous push levetiracetam loading doses compared to intravenous infusion in seizing patients: A retrospective cohort study. | Koons M, Koehl J, Johnson R, Rosenthal ES, Webb AJ | Epilepsia | 39126370 | Epilepsia | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39126370 |
| BRSET: A Brazilian Multilabel Ophthalmological Dataset of Retina Fundus Photos. | Nakayama LF, Restrepo D, Matos J, Ribeiro LZ, Malerbi FK, Celi LA, Regatieri CS | medRxiv : the preprint server for health sciences | 38343827 | medRxiv | 2024 Jan 23 | https://www.ncbi.nlm.nih.gov/pubmed/38343827 |
| Social Determinants of Health and Limitation of Life-Sustaining Therapy in Neurocritical Care: A CHoRUS Pilot Project. | Kwak GH, Kamdar HA, Douglas MJ, Hu H, Ack SE, Lissak IA, Williams AE, Yechoor N, Rosenthal ES | Neurocritical care | 38844599 | Neurocrit Care | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38844599 |
| Utility and rationale for continuous EEG monitoring: a primer for the general intensivist. | Bitar R, Khan UM, Rosenthal ES | Critical care (London, England) | 39014421 | Crit Care | 2024 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/39014421 |
| Practice-Pattern Variation in Sedation of Neurotrauma Patients in the Intensive Care Unit: An International Survey. | Dolmans RGF, Nahed BV, Robertson FC, Peul WC, Rosenthal ES, Broekman MLD | Journal of intensive care medicine | 37415510 | J Intensive Care Med | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37415510 |
| Potential source of bias in AI models: Lactate measurement in the ICU as a template. | Hussein NSA, Pradhan P, Haug FW, Moukheiber D, Moukheiber L, Moukheiber M, Moukheiber S, Weishaupt LL, Ellen JG, D'Couto H, Williams IC, Celi LA, Matos J, Struja T | Research square | 39975902 | Res Sq | 2025 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/39975902 |
| Common Data Elements for Disorders of Consciousness: Recommendations from the Working Group on Physiology and Big Data. | Beqiri E, Badjatia N, Ercole A, Foreman B, Hu P, Hu X, LaRovere K, Meyfroidt G, Moberg D, Robba C, Rosenthal ES, Smielewski P, Wainwright MS, Park S, Curing Coma Campaign and its Contributing Members | Neurocritical care | 37704934 | Neurocrit Care | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37704934 |
| Digital health and acute kidney injury: consensus report of the 27th Acute Disease Quality Initiative workgroup. | Kashani KB, Awdishu L, Bagshaw SM, Barreto EF, Claure-Del Granado R, Evans BJ, Forni LG, Ghosh E, Goldstein SL, Kane-Gill SL, Koola J, Koyner JL, Liu M, Murugan R, Nadkarni GN, Neyra JA, Ninan J, Ostermann M, Pannu N, Rashidi P, Ronco C, Rosner MH, Selby NM, Shickel B, Singh K, Soranno DE, Sutherland SM, Bihorac A, Mehta RL | Nature reviews. Nephrology | 37580570 | Nat Rev Nephrol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37580570 |
| Raising awareness of potential biases in medical machine learning: Experience from a Datathon. | Hochheiser H, Klug J, Mathie T, Pollard TJ, Raffa JD, Ballard SL, Conrad EA, Edakalavan S, Joseph A, Alnomasy N, Nutman S, Hill V, Kapoor S, Claudio EP, Kravchenko OV, Li R, Nourelahi M, Diaz J, Taylor WM, Rooney SR, Woeltje M, Celi LA, Horvat CM | medRxiv : the preprint server for health sciences | 39502657 | medRxiv | 2024 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/39502657 |
| The TRIPOD-LLM reporting guideline for studies using large language models. | Gallifant J, Afshar M, Ameen S, Aphinyanaphongs Y, Chen S, Cacciamani G, Demner-Fushman D, Dligach D, Daneshjou R, Fernandes C, Hansen LH, Landman A, Lehmann L, McCoy LG, Miller T, Moreno A, Munch N, Restrepo D, Savova G, Umeton R, Gichoya JW, Collins GS, Moons KGM, Celi LA, Bitterman DS | Nature medicine | 39779929 | Nat Med | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39779929 |
| Building health systems capable of leveraging AI: applying Paul Farmer's 5S framework for equitable global health. | McCoy LG, Bihorac A, Celi LA, Elmore M, Kewalramani D, Kwaga T, Martinez-Martin N, Prôa R, Schamroth J, Shaffer JD, Youssef A, Fiske A | BMC global and public health | 40312417 | BMC Glob Public Health | 2025 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/40312417 |
| Navigating the Complexities of Artificial Intelligence-Enabled Real-World Data Collection for Oncology Pharmacovigilance. | Gallifant J, Celi LA, Sharon E, Bitterman DS | JCO clinical cancer informatics | 38713889 | JCO Clin Cancer Inform | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/38713889 |
| Drop the shortcuts: image augmentation improves fairness and decreases AI detection of race and other demographics from medical images. | Wang R, Kuo PC, Chen LC, Seastedt KP, Gichoya JW, Celi LA | EBioMedicine | 38471396 | EBioMedicine | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38471396 |
| Forecasting algorithms in the ICU. | Rooney SR, Clermont G | Journal of electrocardiology | 37883866 | J Electrocardiol | 2023 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/37883866 |
| The effect of using a large language model to respond to patient messages. | Chen S, Guevara M, Moningi S, Hoebers F, Elhalawani H, Kann BH, Chipidza FE, Leeman J, Aerts HJWL, Miller T, Savova GK, Gallifant J, Celi LA, Mak RH, Lustberg M, Afshar M, Bitterman DS | The Lancet. Digital health | 38664108 | Lancet Digit Health | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38664108 |
| Continuous ECG monitoring should be the heart of bedside AI-based predictive analytics monitoring for early detection of clinical deterioration. | Monfredi OJ, Moore CC, Sullivan BA, Keim-Malpass J, Fairchild KD, Loftus TJ, Bihorac A, Krahn KN, Dubrawski A, Lake DE, Moorman JR, Clermont G | Journal of electrocardiology | 36434848 | J Electrocardiol | 2023 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/36434848 |
| Multi-dimensional patient acuity estimation with longitudinal EHR tokenization and flexible transformer networks. | Shickel B, Silva B, Ozrazgat-Baslanti T, Ren Y, Khezeli K, Guan Z, Tighe PJ, Bihorac A, Rashidi P | Frontiers in digital health | 36440460 | Front Digit Health | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36440460 |
| Why federated learning will do little to overcome the deeply embedded biases in clinical medicine. | Sauer CM, Pucher G, Celi LA | Intensive care medicine | 38829532 | Intensive Care Med | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38829532 |
| Septic Shock Requiring Three Vasopressors: Patient Demographics and Outcomes. | Kwak GH, Madushani RWMA, Adhikari L, Yan AY, Rosenthal ES, Sebbane K, Yanes Z, Restrepo D, Wong A, Celi LA, Kistler EA | Critical care explorations | 39513987 | Crit Care Explor | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39513987 |
| Competing interests: digital health and indigenous data sovereignty. | Cordes A, Bak M, Lyndon M, Hudson M, Fiske A, Celi LA, McLennan S | NPJ digital medicine | 38965365 | NPJ Digit Med | 2024 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/38965365 |
| A multimodal framework for extraction and fusion of satellite images and public health data. | Moukheiber D, Restrepo D, Cajas SA, Montoya MPA, Celi LA, Kuo KT, López DM, Moukheiber L, Moukheiber M, Moukheiber S, Osorio-Valencia JS, Purkayastha S, Paddo AR, Wu C, Kuo PC | Scientific data | 38879585 | Sci Data | 2024 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/38879585 |
| Detecting and Mitigating the Clever Hans Effect in Medical Imaging: A Scoping Review. | Vásquez-Venegas C, Wu C, Sundar S, Prôa R, Beloy FJ, Medina JR, McNichol M, Parvataneni K, Kurtzman N, Mirshawka F, Aguirre-Jerez M, Ebner DK, Celi LA | Journal of imaging informatics in medicine | 39643820 | J Imaging Inform Med | 2024 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/39643820 |
| Toward a Universal Map of EEG: A Semantic, Low-Dimensional Manifold for EEG Classification, Clustering, and Prognostication. | Krumm L, Kranz DD, Halimeh M, Nelde A, Amorim E, Zafar S, Jing J, Thomas RJ, Westover MB, Meisel C | Annals of neurology | 40539771 | Ann Neurol | 2025 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/40539771 |
| Just how transformative will AI/ML be for immuno-oncology? | Bottomly D, McWeeney S | Journal for immunotherapy of cancer | 38531545 | J Immunother Cancer | 2024 Mar 25 | https://www.ncbi.nlm.nih.gov/pubmed/38531545 |
| Race, Ethnicity, Insurance, and Population Density Associations with Pediatric Strabismus and Strabismic Amblyopia in the IRIS® Registry. | Rajesh AE, Davidson O, Lacy M, Chandramohan A, Lee AY, Lee CS, Tarczy-Hornoch K, IRIS® Registry Analytic Center Consortium | Ophthalmology | 37331481 | Ophthalmology | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37331481 |
| Large language models and their impact in ophthalmology. | Betzler BK, Chen H, Cheng CY, Lee CS, Ning G, Song SJ, Lee AY, Kawasaki R, van Wijngaarden P, Grzybowski A, He M, Li D, Ran Ran A, Ting DSW, Teo K, Ruamviboonsuk P, Sivaprasad S, Chaudhary V, Tadayoni R, Wang X, Cheung CY, Zheng Y, Wang YX, Tham YC, Wong TY | The Lancet. Digital health | 38000875 | Lancet Digit Health | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38000875 |
| Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. | Kalaw FGP, Tavakoli K, Baxter SL | Ophthalmology science | 38025157 | Ophthalmol Sci | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38025157 |
| RETINAL STRUCTURAL CHANGES AFTER CESSATION OF PENTOSAN POLYSULFATE SODIUM. | Kalaw FGP, Most J, Kako RN, Sharma P, Arias JD, Chen JS, Lin AC, Walker E, Bartsch DG, Baxter SL, Ferreyra H, Freeman WR, Borooah S | Retina (Philadelphia, Pa.) | 39174300 | Retina | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39174300 |
| Ethical considerations for large language models in ophthalmology. | Kalaw FGP, Baxter SL | Current opinion in ophthalmology | 39259616 | Curr Opin Ophthalmol | 2024 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/39259616 |
| Developing a 10-Layer Retinal Segmentation for MacTel Using Semi-Supervised Learning. | Verma A, Tzaridis S, Blazes M, Friedlander M, Lee AY, Wu Y | Translational vision science & technology | 39499591 | Transl Vis Sci Technol | 2024 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/39499591 |
| AI-READI: rethinking AI data collection, preparation and sharing in diabetes research and beyond. | AI-READI Consortium | Nature metabolism | 39516364 | Nat Metab | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39516364 |
| Glaucoma Detection and Feature Identification via GPT-4V Fundus Image Analysis. | Jalili J, Jiravarnsirikul A, Bowd C, Chuter B, Belghith A, Goldbaum MH, Baxter SL, Weinreb RN, Zangwill LM, Christopher M | Ophthalmology science | 39877464 | Ophthalmol Sci | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/39877464 |
| Comparison of a Novel Ultra-Widefield Three-Color Scanning Laser Ophthalmoscope to Other Retinal Imaging Modalities in Chorioretinal Lesion Imaging. | Nagel ID, Heinke A, Agnihotri AP, Yassin S, Cheng L, Camp AS, Scott NL, Kalaw FGP, Borooah S, Bartsch DG, Mueller AJ, Mehta N, Freeman WR | Translational vision science & technology | 39804659 | Transl Vis Sci Technol | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39804659 |
| Trends and practices following the 2016 hydroxychloroquine screening guidelines. | Kalaw FGP, Arnett J, Baxter SL, Walker E, Pedersen B, Borooah S | Scientific reports | 37730825 | Sci Rep | 2023 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/37730825 |
| Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. | Wu Y, Olvera-Barrios A, Yanagihara R, Kung TH, Lu R, Leung I, Mishra AV, Nussinovitch H, Grimaldi G, Blazes M, Lee CS, Egan C, Tufail A, Lee AY | Ophthalmology | 36154868 | Ophthalmology | 2023 Feb | https://www.ncbi.nlm.nih.gov/pubmed/36154868 |
| Cross-sectional design and protocol for Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights (AI-READI). | Owsley C, Matthies DS, McGwin G, Edberg JC, Baxter SL, Zangwill LM, Owen JP, Lee CS, AI-READI Consortium | BMJ open | 39915016 | BMJ Open | 2025 Feb 6 | https://www.ncbi.nlm.nih.gov/pubmed/39915016 |
| Publicly available imaging datasets for age-related macular degeneration: Evaluation according to the Findable, Accessible, Interoperable, Reusable (FAIR) principles. | Gim N, Ferguson A, Blazes M, Soundarajan S, Gasimova A, Jiang Y, Sánchez CI, Zalunardo L, Corradetti G, Elze T, Honda N, Waheed NK, Cairns AM, Canto-Soler MV, Domalpally A, Durbin M, Ferrara D, Hu J, Nair P, Lee AY, Sadda SR, Keenan TDL, Patel B, Lee CS, Ryan Initiative For Macular Research (RIMR) Consortium | Experimental eye research | 40089134 | Exp Eye Res | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40089134 |
| A Clinician's Guide to Sharing Data for AI in Ophthalmology. | Gim N, Wu Y, Blazes M, Lee CS, Wang RK, Lee AY | Investigative ophthalmology & visual science | 38864811 | Invest Ophthalmol Vis Sci | 2024 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/38864811 |
| Gap Analysis of Glaucoma Examination Concept Representations within Standard Systemized Nomenclature of Medicine - Clinical Terms. | Hallaj S, Khawaja AP, Rodrigues IAS, Boland MV, Brown EN, Chen A, Stagg BC, Stein JD, Sun CQ, Mahe-Cook AL, Swaminathan SS, Wang SY, Xu BY, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39147325 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39147325 |
| Differences in macular thickness associated with peripheral retinal vessel whitening in diabetic patients. | Kalaw FGP, Sharma P, Walker E, Borooah S | Scientific reports | 39191790 | Sci Rep | 2024 Aug 27 | https://www.ncbi.nlm.nih.gov/pubmed/39191790 |
| Federated Learning in Glaucoma: A Comprehensive Review and Future Perspectives. | Hallaj S, Chuter BG, Lieu AC, Singh P, Kalpathy-Cramer J, Xu BY, Christopher M, Zangwill LM, Weinreb RN, Baxter SL | Ophthalmology. Glaucoma | 39214457 | Ophthalmol Glaucoma | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39214457 |
| Association Between Glucagon-Like Peptide-1 Receptor Agonists Exposure and Intraocular Pressure Change: GLP-1 Receptor Agonists and Intraocular Pressure Change. | Hallaj S, Halfpenny W, Chuter BG, Weinreb RN, Baxter SL, Cui QN | American journal of ophthalmology | 39237049 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39237049 |
| Long-Term Surgical Outcomes of Glaucoma Drainage Implants in Eyes with Preoperative Intraocular Pressure Less than 19 mmHg. | Hallaj S, Wong JC, Hock LE, Kolomeyer NN, Shukla AG, Pro MJ, Moster MR, Myers JS, Razeghinejad R, Lee D | Journal of ophthalmology | 38304290 | J Ophthalmol | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38304290 |
| ARTIFICIAL INTELLIGENCE FOR OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY-BASED DISEASE ACTIVITY PREDICTION IN AGE-RELATED MACULAR DEGENERATION. | Heinke A, Zhang H, Deussen D, Galang CMB, Warter A, Kalaw FGP, Bartsch DG, Cheng L, An C, Nguyen T, Freeman WR | Retina (Philadelphia, Pa.) | 37988102 | Retina | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/37988102 |
| Effect of manual OCTA segmentation correction to improve image quality and visibility of choroidal neovascularization in AMD. | Deussen DN, Heinke A, Elsner W, Galang CMB, Kalaw FGP, Warter A, Bartsch DU, Cheng L, Freeman WR | Scientific reports | 38886462 | Sci Rep | 2024 Jun 18 | https://www.ncbi.nlm.nih.gov/pubmed/38886462 |
| Ultra-wide field and new wide field composite retinal image registration with AI-enabled pipeline and 3D distortion correction algorithm. | Kalaw FGP, Cavichini M, Zhang J, Wen B, Lin AC, Heinke A, Nguyen T, An C, Bartsch DG, Cheng L, Freeman WR | Eye (London, England) | 38114568 | Eye (Lond) | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38114568 |
| Automated Quantitative Assessment of Retinal Vascular Tortuosity in Patients with Sickle Cell Disease. | Chen JS, Kalaw FGP, Nudleman ED, Scott NL | Ophthalmology science | 39886358 | Ophthalmol Sci | 2025 Mar-Apr | https://www.ncbi.nlm.nih.gov/pubmed/39886358 |
| Ethnicity is not biology: retinal pigment score to evaluate biological variability from ophthalmic imaging using machine learning. | Rajesh AE, Olvera-Barrios A, Warwick AN, Wu Y, Stuart KV, Biradar M, Ung CY, Khawaja AP, Luben R, Foster PJ, Lee CS, Tufail A, Lee AY, Egan C, EPIC Norfolk, UK Biobank Eye and Vision Consortium | medRxiv : the preprint server for health sciences | 37461664 | medRxiv | 2023 Jul 6 | https://www.ncbi.nlm.nih.gov/pubmed/37461664 |
| Evaluating Access to Laser Eye Surgery by Driving Times Using Medicare Data and Geographical Mapping. | Shaffer J, Rajesh A, Stewart MW, Lee AY, Miller DD, Lee CS, Francis CE | JAMA ophthalmology | 37471084 | JAMA Ophthalmol | 2023 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/37471084 |
| Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. | Lee CS, Krakauer C, Su YR, Walker RL, Blazes M, McCurry SM, Bowen JD, McCormick WC, Lee AY, Boyko EJ, O'Hare AM, Larson EB, Crane PK | American journal of ophthalmology | 36513155 | Am J Ophthalmol | 2023 May | https://www.ncbi.nlm.nih.gov/pubmed/36513155 |
| A review of ophthalmology education in the era of generative artificial intelligence. | Heinke A, Radgoudarzi N, Huang BB, Baxter SL | Asia-Pacific journal of ophthalmology (Philadelphia, Pa.) | 39134176 | Asia Pac J Ophthalmol (Phila) | 2024 Jul-Aug | https://www.ncbi.nlm.nih.gov/pubmed/39134176 |
| Outer Retinal Thinning is Associated With Brain Atrophy in Early Age-Related Macular Degeneration. | Jiang Y, Swain T, Gim N, Blazes M, Donald CM, Rokem A, Owen JP, Balu N, Clark ME, Goerdt L, McGwin G, Hunt D, Curcio CA, Levendovszky SR, Trittschuh EH, Owsley C, Lee CS | American journal of ophthalmology | 39369929 | Am J Ophthalmol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39369929 |
| Barriers to Extracting and Harmonizing Glaucoma Testing Data: Gaps, Shortcomings, and the Pursuit of FAIRness. | Radgoudarzi N, Hallaj S, Boland MV, Stagg B, Wang SY, Xu B, Swaminathan SS, Brown EN, Chen A, Sun CQ, Amarasekera DC, Myers JS, Saifee M, Halfpenny W, Dirkes K, Zangwill L, Goetz KE, Hribar M, Baxter SL | Ophthalmology science | 39429240 | Ophthalmol Sci | 2024 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/39429240 |
| Evaluating a Foundation Artificial Intelligence Model for Glaucoma Detection Using Color Fundus Photographs. | Chuter B, Huynh J, Hallaj S, Walker E, Liebmann JM, Fazio MA, Girkin CA, Weinreb RN, Christopher M, Zangwill LM | Ophthalmology science | 39650567 | Ophthalmol Sci | 2025 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/39650567 |
| Machine learning derived retinal pigment score from ophthalmic imaging shows ethnicity is not biology. | Rajesh AE, Olvera-Barrios A, Warwick AN, Wu Y, Stuart KV, Biradar MI, Ung CY, Khawaja AP, Luben R, Foster PJ, Cleland CR, Makupa WU, Denniston AK, Burton MJ, Bastawrous A, Keane PA, Chia MA, Turner AW, Lee CS, Tufail A, Lee AY, Egan C, UK Biobank Eye and Vision Consortium | Nature communications | 39746957 | Nat Commun | 2025 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/39746957 |
| RETINAL VESSELS WHITENING IN RETINITIS PIGMENTOSA. | Yassin SH, Wagner NE, Kalaw FGP, Sharma P, Arias JD, Tran M, Nagel I, Walker E, Borooah S | Retina (Philadelphia, Pa.) | 40262144 | Retina | 2025 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/40262144 |
| Microperimetry Findings in Pentosan Polysulfate Maculopathy. | Most J, Kalaw FGP, Walker E, Arias JD, Charng J, Baxter SL, Nudleman E, Ferreyra H, Freeman WR, Chen FK, Borooah S | Ophthalmology. Retina | 37619623 | Ophthalmol Retina | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37619623 |
| Variations in Using Diagnosis Codes for Defining Age-Related Macular Degeneration Cohorts. | Kalaw FGP, Chen JS, Baxter SL | Informatics (MDPI) | 40012991 | Informatics (MDPI) | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40012991 |
| Retinal imaging in an era of open science and privacy protection. | Gim N, Blazes M, Sánchez CI, Zalunardo L, Corradetti G, Elze T, Honda N, Waheed NK, Cairns AM, Canto-Soler MV, Domalpally A, Durbin M, Ferrara D, Hu J, Nair P, Sadda SR, Keenan TDL, Lee CS, RIMR Consortium | Experimental eye research | 40090567 | Exp Eye Res | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40090567 |
| Predictors of Health Care Disparities in Fuchs Dystrophy Treatment Using the IRIS Registry. | Jiang Y, Davidson O, Blazes M, Rajesh AE, Lomazow W, Bagsadarova Y, Lee AY, Lee CS, Sundararajan M, IRIS Registry Analytic Center Consortium | Cornea | 39778162 | Cornea | 2025 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/39778162 |
| High Prevalence of Artifacts in Optical Coherence Tomography With Adequate Signal Strength. | Lin WC, Coyner AS, Amankwa CE, Lucero A, Wollstein G, Schuman JS, Ishikawa H | Translational vision science & technology | 39196579 | Transl Vis Sci Technol | 2024 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/39196579 |
| Developing an image-based grading scale for peripheral drusen to investigate associations of peripheral drusen type with age-related macular degeneration. | Sharma P, Kalaw FGP, Lin A, Walker EH, Borooah S | Scientific reports | 39198593 | Sci Rep | 2024 Aug 29 | https://www.ncbi.nlm.nih.gov/pubmed/39198593 |
| Associations between dementia and exposure to topical glaucoma medications. | Davidson O, Lee ML, Kam JP, Brush M, Rajesh A, Blazes M, Arterburn DE, Duerr E, Gibbons LE, Crane PK, Lee CS, Eye ACT study group | Journal of Alzheimer's disease : JAD | 39834248 | J Alzheimers Dis | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39834248 |
| Dry eye disease treatment improves subjective quality-of-life responses in patients with AMD, independent of disease stage. | Mehta NN, Nagel ID, Agnihotri A, Heinke A, Cheng L, Bartsch DU, Freeman WR, Gomez ML | PloS one | 39913504 | PLoS One | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/39913504 |
| Foundation models in ophthalmology. | Chia MA, Antaki F, Zhou Y, Turner AW, Lee AY, Keane PA | The British journal of ophthalmology | 38834291 | Br J Ophthalmol | 2024 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/38834291 |
