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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Author Journal Name PubMedID Journal Abbreviation Publication Date PubMedLink
NFTest: automated testing of Nextflow pipelines. Patel Y, Zhu C, Yamaguchi TN, Bugh YZ, Tian M, Holmes A, Fitz-Gibbon ST, Boutros PC Bioinformatics (Oxford, England) 38341660 Bioinformatics 2024 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/38341660
Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms. Steinberg PL, Liu LY, Neiman-Golden A, Patel Y, Boutros PC bioRxiv : the preprint server for biology 38370678 bioRxiv 2024 Feb 8 https://www.ncbi.nlm.nih.gov/pubmed/38370678
Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow Pipeline. Patel Y, Zhu C, Yamaguchi TN, Wang NK, Wiltsie N, Zeltser N, Gonzalez AE, Winata HK, Pan Y, Mootor MFE, Sanders T, Fitz-Gibbon ST, Kandoth C, Livingstone J, Liu LY, Carlin B, Holmes A, Oh J, Sahrmann J, Tao S, Eng S, Hugh-White R, Pashminehazar K, Park A, Beshlikyan A, Jordan M, Wu S, Tian M, Arbet J, Neilsen B, Haas R, Bugh YZ, Kim G, Salmingo J, Zhang W, Anand A, Hwang E, Neiman-Golden A, Steinberg P, Zhao W, Anand P, Agrawal R, Tsai BL, Boutros PC bioRxiv : the preprint server for biology 39282325 bioRxiv 2025 Apr 25 https://www.ncbi.nlm.nih.gov/pubmed/39282325
Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets. Ellrott K, Wong CK, Yau C, Castro MAA, Lee JA, Karlberg BJ, Grewal JK, Lagani V, Tercan B, Friedl V, Hinoue T, Uzunangelov V, Westlake L, Loinaz X, Felau I, Wang PI, Kemal A, Caesar-Johnson SJ, Shmulevich I, Lazar AJ, Tsamardinos I, Hoadley KA, Cancer Genome Atlas Analysis Network, Robertson AG, Knijnenburg TA, Benz CC, Stuart JM, Zenklusen JC, Cherniack AD, Laird PW Cancer cell 39753139 Cancer Cell 2025 Feb 10 https://www.ncbi.nlm.nih.gov/pubmed/39753139
Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundation Models. Sankar BS, Gilliland D, Rincon J, Hermjakob H, Yan Y, Adam I, Lemaster G, Wang D, Watson K, Bui A, Wang W, Ping P Bioengineering (Basel, Switzerland) 39451360 Bioengineering (Basel) 2024 Sep 29 https://www.ncbi.nlm.nih.gov/pubmed/39451360
Addressing ethical issues in healthcare artificial intelligence using a lifecycle-informed process. Collins BX, Bélisle-Pipon JC, Evans BJ, Ferryman K, Jiang X, Nebeker C, Novak L, Roberts K, Were M, Yin Z, Ravitsky V, Coco J, Hendricks-Sturrup R, Williams I, Clayton EW, Malin BA, Bridge2AI Ethics and Trustworthy AI Working Group JAMIA open 39553826 JAMIA Open 2024 Dec https://www.ncbi.nlm.nih.gov/pubmed/39553826
ApplyPolygenicScore: An R package for applying polygenic risk score models. Zeltser N, Dang RMA, Hugh-White R, Knight D, Arbet J, Boutros PC Genetics in medicine open 41488031 Genet Med Open 2025 https://www.ncbi.nlm.nih.gov/pubmed/41488031
Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? Afiaz A, Ivanov AA, Chamberlin J, Hanauer D, Savonen CL, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C ArXiv 37332562 ArXiv 2023 Jun 5 https://www.ncbi.nlm.nih.gov/pubmed/37332562
Best practices to evaluate the impact of biomedical research software-metric collection beyond citations. Afiaz A, Ivanov AA, Chamberlin J, Hanauer D, Savonen CL, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C Bioinformatics (Oxford, England) 39067017 Bioinformatics 2024 Aug 2 https://www.ncbi.nlm.nih.gov/pubmed/39067017
The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository. Huang YN, Jaiswal PV, Rajes A, Yadav A, Yu D, Liu F, Scheg G, Shih E, Boldirev G, Nakashidze I, Sarkar A, Mehta JH, Wang K, Patel KK, Mirza MAB, Hapani KC, Peng Q, Ayyala R, Guo R, Kapur S, Ramesh T, Ciorbă D, Munteanu V, Bostan V, Dimian M, Abedalthagafi MS, Mangul S Genome biology 40926267 Genome Biol 2025 Sep 9 https://www.ncbi.nlm.nih.gov/pubmed/40926267
Aggregating multimodal cancer data across unaligned embedding spaces maintains tumor of origin signal. Kirchgaessner R, Keutler K, Sivakumar L, Song X, Ellrott K bioRxiv : the preprint server for biology 40462901 bioRxiv 2025 May 18 https://www.ncbi.nlm.nih.gov/pubmed/40462901
Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems. Pelletier AR, Ramirez J, Sankar BS, Adam I, Yan Y, Steinecke D, Wang W, Watson KE, Ping P Journal of visualized experiments : JoVE 40587410 J Vis Exp 2025 Jun 13 https://www.ncbi.nlm.nih.gov/pubmed/40587410
Health Equity and Artificial Intelligence in Nephrology. Engel Hercz A, Nicholas SB, Bui AAT, Norris KC Clinical journal of the American Society of Nephrology : CJASN 39874085 Clin J Am Soc Nephrol 2025 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/39874085
A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material. Daniels CA, Abdulkadir A, Cleveland MH, McDaniel JH, Jáspez D, Rubio-Rodríguez LA, Muñoz-Barrera A, Lorenzo-Salazar JM, Flores C, Yoo B, Sahraeian SME, Wang Y, Rossi M, Visvanath A, Murray L, Chen WT, Catreux S, Han J, Mehio R, Parnaby G, Carroll A, Chang PC, Shafin K, Cook D, Kolesnikov A, Brambrink L, Mootor MFE, Patel Y, Yamaguchi TN, Boutros PC, Sienkiewicz K, Foox J, Mason CE, Lajoie BR, Ruiz-Perez CA, Kruglyak S, Zook JM, Olson ND bioRxiv : the preprint server for biology 39677813 bioRxiv 2024 Dec 5 https://www.ncbi.nlm.nih.gov/pubmed/39677813
AI-readiness for Biomedical Data: Bridge2AI Recommendations. Clark T, Caufield H, Parker JA, Al Manir S, Amorim E, Eddy J, Gim N, Gow B, Goar W, Haendel M, Hansen JN, Harris N, Hermjakob H, Joachimiak M, Jordan G, Lee IH, McWeeney SK, Nebeker C, Nikolov M, Shaffer J, Sheffield N, Sheynkman G, Stevenson J, Chen JY, Mungall C, Wagner A, Kong SW, Ghosh SS, Patel B, Williams A, Munoz-Torres MC bioRxiv : the preprint server for biology 39484409 bioRxiv 2024 Nov 24 https://www.ncbi.nlm.nih.gov/pubmed/39484409
PipeVal: light-weight extensible tool for file validation. Patel Y, Beshlikyan A, Jordan M, Kim G, Holmes A, Yamaguchi TN, Boutros PC Bioinformatics (Oxford, England) 38341658 Bioinformatics 2024 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/38341658
Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction. Salcedo A, Tarabichi M, Buchanan A, Espiritu SMG, Zhang H, Zhu K, Ou Yang TH, Leshchiner I, Anastassiou D, Guan Y, Jang GH, Mootor MFE, Haase K, Deshwar AG, Zou W, Umar I, Dentro S, Wintersinger JA, Chiotti K, Demeulemeester J, Jolly C, Sycza L, Ko M, PCAWG Evolution and Heterogeneity Working Group, SMC-Het Participants, Wedge DC, Morris QD, Ellrott K, Van Loo P, Boutros PC Nature biotechnology 38862616 Nat Biotechnol 2025 Apr https://www.ncbi.nlm.nih.gov/pubmed/38862616
BOSC 2023, the 24th annual Bioinformatics Open Source Conference. Harris NL, Fields CJ, Hokamp K, Just J, Khetani R, Maia J, Ménager H, Munoz-Torres MC, Unni D, Williams J F1000Research 38076297 F1000Res 2023 https://www.ncbi.nlm.nih.gov/pubmed/38076297
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. Clark T, Mohan J, Schaffer L, Obernier K, Al Manir S, Churas CP, Dailamy A, Doctor Y, Forget A, Hansen JN, Hu M, Lenkiewicz J, Levinson MA, Marquez C, Nourreddine S, Niestroy J, Pratt D, Qian G, Thaker S, Bélisle-Pipon JC, Brandt C, Chen J, Ding Y, Fodeh S, Krogan N, Lundberg E, Mali P, Payne-Foster P, Ratcliffe S, Ravitsky V, Sali A, Schulz W, Ideker T bioRxiv : the preprint server for biology 38826258 bioRxiv 2024 May 24 https://www.ncbi.nlm.nih.gov/pubmed/38826258
A sex-specific genome-wide association study of blood lipid levels in All of Us. Li Y, Lee IH, Kong SW medRxiv : the preprint server for health sciences 41332874 medRxiv 2025 Nov 22 https://www.ncbi.nlm.nih.gov/pubmed/41332874
Artificial intelligence in pediatric healthcare: current applications, potential, and implementation considerations. Park T, Lee IH, Lee SW, Kong SW Clinical and experimental pediatrics 40776620 Clin Exp Pediatr 2025 Sep https://www.ncbi.nlm.nih.gov/pubmed/40776620
Discordance between a deep learning model and clinical-grade variant pathogenicity classification in a rare disease cohort. Kong SW, Lee IH, Collen LV, Field M, Manrai AK, Snapper SB, Mandl KD NPJ genomic medicine 40021654 NPJ Genom Med 2025 Feb 28 https://www.ncbi.nlm.nih.gov/pubmed/40021654
Lithium and the Brain-Bone Axis: A Bridge between Osteoporosis and Alzheimer's Disease. Lee JW, Hasegawa T, Ikedo A, Mizuno K, Amizuka N, Kong SW Current osteoporosis reports 41663782 Curr Osteoporos Rep 2026 Feb 10 https://www.ncbi.nlm.nih.gov/pubmed/41663782
Deep learning to predict rapid progression of Alzheimer's disease from pooled clinical trials: A retrospective study. Ma X, Shyer M, Harris K, Wang D, Hsu YC, Farrell C, Goodwin N, Anjum S, Bukhbinder AS, Dean S, Khan T, Hunter D, Schulz PE, Jiang X, Kim Y PLOS digital health 38598464 PLOS Digit Health 2024 Apr https://www.ncbi.nlm.nih.gov/pubmed/38598464
Sensitive Data Detection with High-Throughput Machine Learning Models in Electrical Health Records. Zhang K, Jiang X AMIA ... Annual Symposium proceedings. AMIA Symposium 38222389 AMIA Annu Symp Proc 2023 https://www.ncbi.nlm.nih.gov/pubmed/38222389
Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial Networks. Li B, Shi X, Gao H, Jiang X, Zhang K, Harmanci AO, Malin B bioRxiv : the preprint server for biology 37609241 bioRxiv 2023 Aug 26 https://www.ncbi.nlm.nih.gov/pubmed/37609241
Using Natural Language Processing to Predict Fatal Drug Overdose From Autopsy Narrative Text: Algorithm Development and Validation Study. Tang LA, Korona-Bailey J, Zaras D, Roberts A, Mukhopadhyay S, Espy S, Walsh CG JMIR public health and surveillance 37204824 JMIR Public Health Surveill 2023 May 19 https://www.ncbi.nlm.nih.gov/pubmed/37204824
Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review. Lacson R, Yu Y, Kuo TT, Ohno-Machado L Journal of the American Medical Informatics Association : JAMIA 38726710 J Am Med Inform Assoc 2024 May 20 https://www.ncbi.nlm.nih.gov/pubmed/38726710
Large language models are less effective at clinical prediction tasks than locally trained machine learning models. Brown KE, Yan C, Li Z, Zhang X, Collins BX, Chen Y, Clayton EW, Kantarcioglu M, Vorobeychik Y, Malin BA Journal of the American Medical Informatics Association : JAMIA 40056436 J Am Med Inform Assoc 2025 May 1 https://www.ncbi.nlm.nih.gov/pubmed/40056436
Digital Information Ecosystems in Modern Care Coordination and Patient Care Pathways and the Challenges and Opportunities for AI Solutions. Chen Y, Lehmann CU, Malin B Journal of medical Internet research 39622048 J Med Internet Res 2024 Dec 2 https://www.ncbi.nlm.nih.gov/pubmed/39622048
Risk Model-Guided Clinical Decision Support for Suicide Screening: A Randomized Clinical Trial. Walsh CG, Ripperger MA, Novak L, Reale C, Anders S, Spann A, Kolli J, Robinson K, Chen Q, Isaacs D, Acosta LMY, Phibbs F, Fielstein E, Wilimitis D, Musacchio Schafer K, Hilton R, Albert D, Shelton J, Stroh J, Stead WW, Johnson KB JAMA network open 39752160 JAMA Netw Open 2025 Jan 2 https://www.ncbi.nlm.nih.gov/pubmed/39752160
Auditor Models to Suppress Poor AI Predictions Can Improve Human-AI Collaborative Performance. Brown KE, Wrenn JO, Jackson NJ, Cauley MR, Collins B, Novak LL, Malin BA, Ancker JS medRxiv : the preprint server for health sciences 40666330 medRxiv 2025 Jun 24 https://www.ncbi.nlm.nih.gov/pubmed/40666330
False-positive tolerant model misconduct mitigation in distributed federated learning on electronic health record data across clinical institutions. Edelson M, Pham A, Kuo TT Scientific reports 40603924 Sci Rep 2025 Jul 2 https://www.ncbi.nlm.nih.gov/pubmed/40603924
Synoptic reporting by summarizing cancer pathology reports using large language models. Rajaganapathy S, Chowdhury S, Li X, Buchner V, He Z, Zhang R, Jiang X, Yang P, Cerhan JR, Zong N npj health systems 41623418 Npj Health Syst 2025 https://www.ncbi.nlm.nih.gov/pubmed/41623418
Fact Check: Assessing the Response of ChatGPT to Alzheimer's Disease Statements with Varying Degrees of Misinformation. Huang SS, Song Q, Beiting KJ, Duggan MC, Hines K, Murff H, Leung V, Powers J, Harvey TS, Malin B, Yin Z medRxiv : the preprint server for health sciences 37745352 medRxiv 2023 Sep 7 https://www.ncbi.nlm.nih.gov/pubmed/37745352
Quorum-based model learning on a blockchain hierarchical clinical research network using smart contracts. Kuo TT, Pham A International journal of medical informatics 36402113 Int J Med Inform 2023 Jan https://www.ncbi.nlm.nih.gov/pubmed/36402113
SPeC: A Soft Prompt-Based Calibration on Performance Variability of Large Language Model in Clinical Notes Summarization. Chuang YN, Tang R, Jiang X, Hu X Journal of biomedical informatics 38325698 J Biomed Inform 2024 Mar https://www.ncbi.nlm.nih.gov/pubmed/38325698
Split Learning for Distributed Collaborative Training of Deep Learning Models in Health Informatics. Li Z, Yan C, Zhang X, Gharibi G, Yin Z, Jiang X, Malin BA AMIA ... Annual Symposium proceedings. AMIA Symposium 38222326 AMIA Annu Symp Proc 2023 https://www.ncbi.nlm.nih.gov/pubmed/38222326
Large Language Models for Healthcare Data Augmentation: An Example on Patient-Trial Matching. Yuan J, Tang R, Jiang X, Hu X AMIA ... Annual Symposium proceedings. AMIA Symposium 38222339 AMIA Annu Symp Proc 2023 https://www.ncbi.nlm.nih.gov/pubmed/38222339
FERI: A Multitask-based Fairness Achieving Algorithm with Applications to Fair Organ Transplantation. Li C, Lai D, Jiang X, Zhang K AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 38827050 AMIA Jt Summits Transl Sci Proc 2024 https://www.ncbi.nlm.nih.gov/pubmed/38827050
De-identification is not enough: a comparison between de-identified and synthetic clinical notes. Sarkar AR, Chuang YS, Mohammed N, Jiang X Scientific reports 39613846 Sci Rep 2024 Nov 29 https://www.ncbi.nlm.nih.gov/pubmed/39613846
Predicting multiple sclerosis severity with multimodal deep neural networks. Zhang K, Lincoln JA, Jiang X, Bernstam EV, Shams S BMC medical informatics and decision making 37946182 BMC Med Inform Decis Mak 2023 Nov 9 https://www.ncbi.nlm.nih.gov/pubmed/37946182
Enhancement of Fairness in AI for Chest X-ray Classification. Jackson NJ, Yan C, Malin BA AMIA ... Annual Symposium proceedings. AMIA Symposium 40417510 AMIA Annu Symp Proc 2024 https://www.ncbi.nlm.nih.gov/pubmed/40417510
Federated Multiple Imputation for Variables that Are Missing Not At Random in Distributed Electronic Health Records. Lian Y, Jiang X, Long Q AMIA ... Annual Symposium proceedings. AMIA Symposium 40417515 AMIA Annu Symp Proc 2024 https://www.ncbi.nlm.nih.gov/pubmed/40417515
Robust privacy amidst innovation with large language models through a critical assessment of the risks. Chuang YS, Sarkar AR, Hsu YC, Mohammed N, Jiang X Journal of the American Medical Informatics Association : JAMIA 40112189 J Am Med Inform Assoc 2025 May 1 https://www.ncbi.nlm.nih.gov/pubmed/40112189
Not the Models You Are Looking For: Traditional ML Outperforms LLMs in Clinical Prediction Tasks. Brown KE, Yan C, Li Z, Zhang X, Collins BX, Chen Y, Clayton EW, Kantarcioglu M, Vorobeychik Y, Malin BA medRxiv : the preprint server for health sciences 39677419 medRxiv 2024 Dec 5 https://www.ncbi.nlm.nih.gov/pubmed/39677419
Rural Medical Centers Struggle to Produce Well-Calibrated Clinical Prediction Models: Data Augmentation Can Help. Brown KE, Malin BA, Davis SE medRxiv : the preprint server for health sciences 40585177 medRxiv 2025 Jun 17 https://www.ncbi.nlm.nih.gov/pubmed/40585177
Guiding Principles to Address the Impact of Algorithm Bias on Racial and Ethnic Disparities in Health and Health Care. Chin MH, Afsar-Manesh N, Bierman AS, Chang C, Colón-Rodríguez CJ, Dullabh P, Duran DG, Fair M, Hernandez-Boussard T, Hightower M, Jain A, Jordan WB, Konya S, Moore RH, Moore TT, Rodriguez R, Shaheen G, Snyder LP, Srinivasan M, Umscheid CA, Ohno-Machado L JAMA network open 38100101 JAMA Netw Open 2023 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/38100101
Optimized Risk Score to Predict Mortality in Patients With Cardiogenic Shock in the Cardiac Intensive Care Unit. Yamga E, Mantena S, Rosen D, Bucholz EM, Yeh RW, Celi LA, Ustun B, Butala NM Journal of the American Heart Association 37345819 J Am Heart Assoc 2023 Jul 4 https://www.ncbi.nlm.nih.gov/pubmed/37345819
Human-Centered Design to Address Biases in Artificial Intelligence. Chen Y, Clayton EW, Novak LL, Anders S, Malin B Journal of medical Internet research 36961506 J Med Internet Res 2023 Mar 24 https://www.ncbi.nlm.nih.gov/pubmed/36961506
Guidance for unbiased predictive information for healthcare decision-making and equity (GUIDE): considerations when race may be a prognostic factor. Ladin K, Cuddeback J, Duru OK, Goel S, Harvey W, Park JG, Paulus JK, Sackey J, Sharp R, Steyerberg E, Ustun B, van Klaveren D, Weingart SN, Kent DM NPJ digital medicine 39427028 NPJ Digit Med 2024 Oct 19 https://www.ncbi.nlm.nih.gov/pubmed/39427028
Distributed cross-learning for equitable federated models - privacy-preserving prediction on data from five California hospitals. Kuo TT, Gabriel RA, Koola J, Schooley RT, Ohno-Machado L Nature communications 39910076 Nat Commun 2025 Feb 5 https://www.ncbi.nlm.nih.gov/pubmed/39910076
Factors Influencing Informed Consent Preferences in Digital Health Research: Survey Study of Prospective Participants. McInnis BJ, Pindus R, Kareem D, Vital DG, Hekler EB, Nebeker C Journal of medical Internet research 39847412 J Med Internet Res 2025 Jan 23 https://www.ncbi.nlm.nih.gov/pubmed/39847412
Enhancing fairness in disease prediction by optimizing multiple domain adversarial networks. Li B, Jiang X, Zhang K, Harmanci AO, Malin B, Gao H, Shi X, Alzheimer’s Disease Neuroimaging Initiative PLOS digital health 40445951 PLOS Digit Health 2025 May https://www.ncbi.nlm.nih.gov/pubmed/40445951
Ensuring Trust in Genomics Research. Ayday E, Vaidya J, Jiang X, Telenti A ... IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications : (TPS-ISA ...). IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications 38562180 IEEE Int Conf Trust Priv Secur Intell Syst Appl 2023 Nov https://www.ncbi.nlm.nih.gov/pubmed/38562180
Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. Kuo TT, Pham A, Edelson ME, Kim J, Chan J, Gupta Y, Ohno-Machado L, R2D2 Consortium Journal of the American Medical Informatics Association : JAMIA 36916740 J Am Med Inform Assoc 2023 May 19 https://www.ncbi.nlm.nih.gov/pubmed/36916740
A Multifaceted benchmarking of synthetic electronic health record generation models. Yan C, Yan Y, Wan Z, Zhang Z, Omberg L, Guinney J, Mooney SD, Malin BA Nature communications 36494374 Nat Commun 2022 Dec 9 https://www.ncbi.nlm.nih.gov/pubmed/36494374
A comparative atlas of single-cell chromatin accessibility in the human brain. Li YE, Preissl S, Miller M, Johnson ND, Wang Z, Jiao H, Zhu C, Wang Z, Xie Y, Poirion O, Kern C, Pinto-Duarte A, Tian W, Siletti K, Emerson N, Osteen J, Lucero J, Lin L, Yang Q, Zhu Q, Zemke N, Espinoza S, Yanny AM, Nyhus J, Dee N, Casper T, Shapovalova N, Hirschstein D, Hodge RD, Linnarsson S, Bakken T, Levi B, Keene CD, Shang J, Lein E, Wang A, Behrens MM, Ecker JR, Ren B Science (New York, N.Y.) 37824643 Science 2023 Oct 13 https://www.ncbi.nlm.nih.gov/pubmed/37824643
Adaptive Recruitment Resource Allocation to Improve Cohort Representativeness in Participatory Biomedical Datasets. Borza VA, Estornell A, Clayton EW, Ho CJ, Rothman RL, Vorobeychik Y, Malin BA AMIA ... Annual Symposium proceedings. AMIA Symposium 40417546 AMIA Annu Symp Proc 2024 https://www.ncbi.nlm.nih.gov/pubmed/40417546
Computational strategic recruitment for representation and coverage studied in the All of Us Research Program. Borza VA, Chen Q, Clayton EW, Kantarcioglu M, Sulieman L, Vorobeychik Y, Malin BA NPJ digital medicine 40610586 NPJ Digit Med 2025 Jul 3 https://www.ncbi.nlm.nih.gov/pubmed/40610586
Longitudinal Analysis of Electronic Health Records Reveals Medical Conditions Associated with Subsequent Alzheimer's Disease Development. Zhong X, Jia G, Yin Z, Cheng K, Rzhetsky A, Li B, Cox NJ medRxiv : the preprint server for health sciences 40196258 medRxiv 2025 Mar 24 https://www.ncbi.nlm.nih.gov/pubmed/40196258
Using dataflow diagrams to support research informed consent data management communications: participant perspectives. McInnis BJ, Pindus R, Kareem DH, Cakici J, Vital DG, Hekler E, Nebeker C Journal of the American Medical Informatics Association : JAMIA 39903169 J Am Med Inform Assoc 2025 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/39903169
Longitudinal analysis of electronic health records reveals medical conditions associated with subsequent Alzheimer's disease development. Zhong X, Jia G, Yin Z, Chen R, Cheng K, Rzhetsky A, Li B, Cox NJ Alzheimer's research & therapy 41466307 Alzheimers Res Ther 2025 Dec 29 https://www.ncbi.nlm.nih.gov/pubmed/41466307
Biomedical data repositories require governance for artificial intelligence/machine learning applications at every step. Clayton EW, Rose S, Nebecker C, Novak L, Bensoussan Y, Chen Y, Collins BX, Cordes A, Evans BJ, Ferryman KS, Hurst S, Jiang X, Lee AY, McWeeney S, Parker J, Bélisle-Pipon JC, Rosenthal E, Yin Z, Yracheta J, Malin BA, Bridge2AI Ethics Working Group JAMIA open 41334246 JAMIA Open 2025 Dec https://www.ncbi.nlm.nih.gov/pubmed/41334246
Generative AI, Specific Moral Values: A Closer Look at ChatGPT's New Ethical Implications for Medical AI. Victor G, Bélisle-Pipon JC, Ravitsky V The American journal of bioethics : AJOB 37812098 Am J Bioeth 2023 Oct https://www.ncbi.nlm.nih.gov/pubmed/37812098
Evaluation of large language models for discovery of gene set function. Hu M, Alkhairy S, Lee I, Pillich RT, Bachelder R, Ideker T, Pratt D Research square 37790547 Res Sq 2023 Sep 18 https://www.ncbi.nlm.nih.gov/pubmed/37790547
Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation. Ford K, Munson BP, Fong SH, Panwala R, Chu WK, Rainaldi J, Plongthongkum N, Arunachalam V, Kostrowicki J, Meluzzi D, Kreisberg JF, Jensen-Pergakes K, VanArsdale T, Paul T, Tamayo P, Zhang K, Bienkowska J, Mali P, Ideker T Scientific reports 37169829 Sci Rep 2023 May 11 https://www.ncbi.nlm.nih.gov/pubmed/37169829
A multi-scale map of protein assemblies in the DNA damage response. Kratz A, Kim M, Kelly MR, Zheng F, Koczor CA, Li J, Ono K, Qin Y, Churas C, Chen J, Pillich RT, Park J, Modak M, Collier R, Licon K, Pratt D, Sobol RW, Krogan NJ, Ideker T Cell systems 37220749 Cell Syst 2023 Jun 21 https://www.ncbi.nlm.nih.gov/pubmed/37220749
De novo generation of multi-target compounds using deep generative chemistry. Munson BP, Chen M, Bogosian A, Kreisberg JF, Licon K, Abagyan R, Kuenzi BM, Ideker T Nature communications 38710699 Nat Commun 2024 May 6 https://www.ncbi.nlm.nih.gov/pubmed/38710699
Multi-modal contrastive learning of subcellular organization using DICE. Nasser R, Schaffer LV, Ideker T, Sharan R Bioinformatics (Oxford, England) 39230695 Bioinformatics 2024 Sep 1 https://www.ncbi.nlm.nih.gov/pubmed/39230695
Putting proteins in context. Hu M, Ideker T Cell systems 39418999 Cell Syst 2024 Oct 16 https://www.ncbi.nlm.nih.gov/pubmed/39418999
Multimodal cell maps as a foundation for structural and functional genomics. Schaffer LV, Hu M, Qian G, Moon KM, Pal A, Soni N, Latham AP, Pontano Vaites L, Tsai D, Mattson NM, Licon K, Bachelder R, Cesnik A, Gaur I, Le T, Leineweber W, Palar A, Pulido E, Qin Y, Zhao X, Churas C, Lenkiewicz J, Chen J, Ono K, Pratt D, Zage P, Echeverria I, Sali A, Harper JW, Gygi SP, Foster LJ, Huttlin EL, Lundberg E, Ideker T Nature 40205054 Nature 2025 Jun https://www.ncbi.nlm.nih.gov/pubmed/40205054
A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS. Nourreddine S, Doctor Y, Dailamy A, Forget A, Lee YH, Chinn B, Khaliq H, Polacco B, Muralidharan M, Pan E, Zhang Y, Sigaeva A, Hansen JN, Gao J, Parker JA, Obernier K, Clark T, Chen JY, Metallo C, Lundberg E, Ideker T, Krogan N, Mali P bioRxiv : the preprint server for biology 39574586 bioRxiv 2024 Nov 4 https://www.ncbi.nlm.nih.gov/pubmed/39574586
Discovery and significance of protein-protein interactions in health and disease. Greenblatt JF, Alberts BM, Krogan NJ Cell 39547210 Cell 2024 Nov 14 https://www.ncbi.nlm.nih.gov/pubmed/39547210
Cell shapes decode molecular phenotypes in image-based spatial proteomics. Le T, Leineweber WD, Viana MP, Cesnik A, Hansen JN, Ouyang W, Rafelski SM, Lundberg E bioRxiv : the preprint server for biology 40463127 bioRxiv 2025 May 16 https://www.ncbi.nlm.nih.gov/pubmed/40463127
Informatics at the Frontier of Cancer Research. Noller K, Botsis T, Camara PG, Ciotti L, Cooper LAD, Goecks J, Griffith M, Haas BJ, Ideker T, Karchin R, Kontos D, Lai J, Marcus D, Meyer CA, Naegle K, Pati S, Peters B, Pratt D, Raphael BJ, Reich M, Savova GK, Wright C, Fertig EJ, Bakas S Cancer research 40600473 Cancer Res 2025 Aug 15 https://www.ncbi.nlm.nih.gov/pubmed/40600473
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Charting and probing the activity of ADARs in human development and cell-fate specification. Dailamy A, Lyu W, Nourreddine S, Tong M, Rainaldi J, McDonald D, Panwala R, Muotri A, Breen MS, Zhang K, Mali P Nature communications 39537590 Nat Commun 2024 Nov 13 https://www.ncbi.nlm.nih.gov/pubmed/39537590
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Individuals and (Synthetic) Data Points: Using Value-Sensitive Design to Foster Ethical Deliberations on Epistemic Transitions. Bélisle-Pipon JC, Ravitsky V, Bridge2AI-Voice Consortium, Bensoussan Y The American journal of bioethics : AJOB 37647464 Am J Bioeth 2023 Sep https://www.ncbi.nlm.nih.gov/pubmed/37647464
RNA editing: Expanding the potential of RNA therapeutics. Booth BJ, Nourreddine S, Katrekar D, Savva Y, Bose D, Long TJ, Huss DJ, Mali P Molecular therapy : the journal of the American Society of Gene Therapy 36620962 Mol Ther 2023 Jun 7 https://www.ncbi.nlm.nih.gov/pubmed/36620962
FAIRSCAPE: An Evolving AI-readiness Framework for Biomedical Research. Al Manir S, Levinson MA, Niestroy J, Churas C, Parker JA, Clark T bioRxiv : the preprint server for biology 39763764 bioRxiv 2025 May 6 https://www.ncbi.nlm.nih.gov/pubmed/39763764
Commentary: Implications of causality in artificial intelligence. Why Causal AI is easier said than done. Bélisle-Pipon JC Frontiers in artificial intelligence 39911917 Front Artif Intell 2024 https://www.ncbi.nlm.nih.gov/pubmed/39911917
Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. Low DM, Rao V, Randolph G, Song PC, Ghosh SS medRxiv : the preprint server for health sciences 33501466 medRxiv 2024 Mar 20 https://www.ncbi.nlm.nih.gov/pubmed/33501466
Correlations Between Anxiety and/or Depression Diagnoses and Dysphagia Severity. Doruk C, Mocchetti V, Rives H, Christos P, Rameau A The Laryngoscope 37942834 Laryngoscope 2024 May https://www.ncbi.nlm.nih.gov/pubmed/37942834
Access to Otolaryngologic Telemedicine Care Across the COVID-19 Pandemic at an Urban Tertiary Hospital System. Srinivasan Y, Andreadis K, Ballakur SS, Rameau A Ear, nose, & throat journal 38488168 Ear Nose Throat J 2024 Jun https://www.ncbi.nlm.nih.gov/pubmed/38488168
Evidence-Based Recommendations for Tablet Recordings From the Bridge2AI-Voice Acoustic Experiments. Awan SN, Bahr R, Watts S, Boyer M, Budinsky R, Bridge2AI-Voice Consortium, Bensoussan Y Journal of voice : official journal of the Voice Foundation 39306498 J Voice 2024 Sep 20 https://www.ncbi.nlm.nih.gov/pubmed/39306498
An Evaluation of Current Trends in AI-Generated Text in Otolaryngology Publications. Kutler RB, Setzen SA, Tsai S, Rameau A The Laryngoscope 40277459 Laryngoscope 2025 Oct https://www.ncbi.nlm.nih.gov/pubmed/40277459
American Academy of Otolaryngology-Head and Neck Surgery (AAO-HNS) Report on Artificial Intelligence. Ayoub NF, Rameau A, Brenner MJ, Bur AM, Ator GA, Briggs SE, Takashima M, Stankovic KM, AAO‐HNS Artificial Intelligence Task Force Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 39666770 Otolaryngol Head Neck Surg 2025 Feb https://www.ncbi.nlm.nih.gov/pubmed/39666770
Validation of a Low-Cost Method for Recording and Supervising Otolaryngology Trainee Endoscopies. Lee M, Yu M, Morse E, Rameau A Journal of voice : official journal of the Voice Foundation 39609221 J Voice 2024 Nov 27 https://www.ncbi.nlm.nih.gov/pubmed/39609221
The Bridge2AI-voice application: initial feasibility study of voice data acquisition through mobile health. Moothedan E, Boyer M, Watts S, Abdel-Aty Y, Ghosh S, Rameau A, Sigaras A, Elemento O, Bridge2AI-Voice Consortium, Bensoussan Y Frontiers in digital health 40302934 Front Digit Health 2025 https://www.ncbi.nlm.nih.gov/pubmed/40302934
Association of Dysphonia in Patients With Dysphagia in the United States: A National Database Study. He L, Zhao R, Curtis J, Graham-Tutt C, Rameau A The Laryngoscope 40317750 Laryngoscope 2025 Sep https://www.ncbi.nlm.nih.gov/pubmed/40317750
Standardizing Survey Data Collection to Enhance Reproducibility: Development and Comparative Evaluation of the ReproSchema Ecosystem. Chen Y, Jarecka D, Abraham SA, Gau R, Ng E, Low DM, Bevers I, Johnson A, Keshavan A, Klein A, Clucas J, Rosli Z, Hodge SM, Linkersdörfer J, Bartsch H, Das S, Fair D, Kennedy D, Ghosh SS Journal of medical Internet research 40644691 J Med Internet Res 2025 Jul 11 https://www.ncbi.nlm.nih.gov/pubmed/40644691
"Low Risk, High Happiness": A Review of Openly Declared Ethical and Legal Practices in Voice Biomarker Health-Tech Start-Ups. Gallois H, Ivkovic L, Evangelista E, Bensoussan Y, B2AI-Voice Consortium, Bélisle-Pipon JC Health care analysis : HCA : journal of health philosophy and policy 41091343 Health Care Anal 2025 Oct 15 https://www.ncbi.nlm.nih.gov/pubmed/41091343
Concurrent Validity of a Low-Cost Manometer for Objective Assessments of Respiratory Muscle Strength. Curtis JA, Mocchetti V, Rameau A The Laryngoscope 37837395 Laryngoscope 2024 Apr https://www.ncbi.nlm.nih.gov/pubmed/37837395
Using Generative Artificial Intelligence in the Production and Dissemination of Innovation in Otolaryngology-Ethical Considerations. Khoury CJ, Enver N, Paderno A, Ratti E, Rameau A Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 38044483 Otolaryngol Head Neck Surg 2024 Jun https://www.ncbi.nlm.nih.gov/pubmed/38044483
In Response to Concurrent Validity of the IOPI and Tongueometer Orofacial Strength Measurement Devices. Curtis JA, Mocchetti V, Rameau A The Laryngoscope 37905777 Laryngoscope 2024 Jan https://www.ncbi.nlm.nih.gov/pubmed/37905777
Voice Disorders and Hearing Loss May Be Additive Risk Factors for Depression in a National Cohort. Rameau A, Tucker LH, Denham MW, Kang YJ, Choi N, Lachs M, Rosen TE, Stewart M, Czaja S, Golub JS The Laryngoscope 38804637 Laryngoscope 2024 Sep https://www.ncbi.nlm.nih.gov/pubmed/38804637
Design and Usability of an Open-Source, Low-Cost Flexible Laryngoscope for Resource-Limited Settings. Srinivasan Y, Shamritsky D, Bhatta A, Chou E, Pham T, Sanghvi Y, Woolf L, Zhang M, Odigie E, Chidziva C, Muganda E, Zimani P, de Faria N, Rameau A JAMA otolaryngology-- head & neck surgery 38451500 JAMA Otolaryngol Head Neck Surg 2024 Apr 1 https://www.ncbi.nlm.nih.gov/pubmed/38451500
Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews and meta-analyses. Zavalis EA, Rameau A, Saraswathula A, Vist J, Schuit E, Ioannidis JP BMJ open 38195174 BMJ Open 2024 Jan 9 https://www.ncbi.nlm.nih.gov/pubmed/38195174
The San Diego Consensus for Laryngopharyngeal Symptoms and Laryngopharyngeal Reflux Disease. Yadlapati R, Weissbrod P, Walsh E, Carroll TL, Chan WW, Gartner-Schmidt J, Guadagnoli L, Jette M, Myers JC, O'Rourke A, Sweis R, Wu J, Barkmeier-Kraemer JM, Cates D, Chen CL, Coss-Adame E, Dion G, Francis D, Kaneko M, Lechien JR, Misono S, Rameau A, Roman S, Vertigan A, Xiao Y, Zerbib F, Greytak M, Pandolfino JE, Gyawali CP The American journal of gastroenterology 40197644 Am J Gastroenterol 2026 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/40197644
Transitional Foods and Their Effects on Swallowing Safety and Efficiency: An Exploratory Study. Mocchetti V, Barewal R, Curtis JA, Erardi E, Scholl R, Rameau A The Laryngoscope 40851343 Laryngoscope 2026 Feb https://www.ncbi.nlm.nih.gov/pubmed/40851343
Generative Artificial Intelligence Methodology Reporting in Otolaryngology: A Scoping Review. Alter IL, Chan K, Andreadis K, Rameau A The Laryngoscope 40995988 Laryngoscope 2026 Mar https://www.ncbi.nlm.nih.gov/pubmed/40995988
Female Surgical Ergonomics in Otolaryngology. Kutler RB, Rameau A Operative techniques in otolaryngology--head and neck surgery 40861043 Oper Tech Otolayngol Head Neck Surg 2025 Jun https://www.ncbi.nlm.nih.gov/pubmed/40861043
Transformers for rapid detection of airway stenosis and stridor. Anibal J, Doctor R, Boyer M, Newberry K, De Santiago I, Awan S, Abdel-Aty Y, Dion G, Daoud V, Huth H, Watts S, Wood BJ, Clifton D, Gelbard A, Powell M, Toghranegar J, Bridge2AI Voice Consortium, Bensoussan Y Scientific reports 40316652 Sci Rep 2025 May 2 https://www.ncbi.nlm.nih.gov/pubmed/40316652
Developing a mobile application for gender-affirming voice training: A community-engaged approach. Alter IL, Chadwick KA, Andreadis K, Coleman R, Pitti M, Ezell JM, Rameau A Laryngoscope investigative otolaryngology 39679168 Laryngoscope Investig Otolaryngol 2024 Dec https://www.ncbi.nlm.nih.gov/pubmed/39679168
Assessing Injectate Volume in Injection Laryngoplasty Using Low-Cost Handheld Ultrasonography: Feasibility Study in an Ex Vivo Porcine Model. Lee M, Clark CM, Kervin SR, Baik E, Rameau A Journal of voice : official journal of the Voice Foundation 41093666 J Voice 2025 Oct 14 https://www.ncbi.nlm.nih.gov/pubmed/41093666
Feasibility of Awake In-Office Transnasal Double Balloon Dilation of the Pharyngoesophageal Segment. Clark CM, Doruk C, Mocchetti V, Rameau A The Laryngoscope 41518064 Laryngoscope 2026 May https://www.ncbi.nlm.nih.gov/pubmed/41518064
Exploring Real-Time Tracking of Vocal Fold Polyps in Video-Stroboscopy Using Deep Learning. Kaza S, Mohanty AS, Serpedin A, Yau J, Kim YE, Kutler RB, Elemento O, Sulica L, Khosravi P, Rameau A The Laryngoscope 41623203 Laryngoscope 2026 Feb 2 https://www.ncbi.nlm.nih.gov/pubmed/41623203
ADGR: Admixture-Informed Differential Gene Regulation. Lee IH, Kong SW Genes 36672888 Genes (Basel) 2023 Jan 5 https://www.ncbi.nlm.nih.gov/pubmed/36672888
A Novel Low-Cost, Open-Source, Three-Dimensionally Printed Thyroplasty Simulator. Kostas JC, Lee M, Rameau A Journal of voice : official journal of the Voice Foundation 38036381 J Voice 2023 Nov 29 https://www.ncbi.nlm.nih.gov/pubmed/38036381
Current Practices in Voice Data Collection and Limitations to Voice AI Research: A National Survey. Evangelista E, Kale R, McCutcheon D, Rameau A, Gelbard A, Powell M, Johns M, Law A, Song P, Naunheim M, Watts S, Bryson PC, Crowson MG, Pinto J, Bridge2AI-Voice, Bensoussan Y The Laryngoscope 38087983 Laryngoscope 2024 Mar https://www.ncbi.nlm.nih.gov/pubmed/38087983
Epistemological Challenges of Artificial Intelligence Clinical Decision Support Tools in Otolaryngology: The Black Box Problem. Babu CS, Holsinger FC, Zuchowski L, Ratti E, Rameau A Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 37344955 Otolaryngol Head Neck Surg 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/37344955
Female Surgical Ergonomics in Otolaryngology: A Qualitative Study. Morse E, Harpel L, Born H, Rameau A The Laryngoscope 37096670 Laryngoscope 2023 Nov https://www.ncbi.nlm.nih.gov/pubmed/37096670
Outcomes of Gender-Affirming Voice and Communication Modification Training for Non-binary Individuals: A Case Series. Chadwick KA, Liao D, Alter IL, Coleman R, Andreadis K, Riekki R, Waldman J, Rives H, Pitti M, Rameau A Journal of voice : official journal of the Voice Foundation 37673753 J Voice 2026 Jan https://www.ncbi.nlm.nih.gov/pubmed/37673753
Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. Low DM, Rao V, Randolph G, Song PC, Ghosh SS PLOS digital health 38814939 PLOS Digit Health 2024 May https://www.ncbi.nlm.nih.gov/pubmed/38814939
New developments in the application of artificial intelligence to laryngology. Torborg SR, Kim AYE, Rameau A Current opinion in otolaryngology & head and neck surgery 39146248 Curr Opin Otolaryngol Head Neck Surg 2024 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/39146248
Quantification of Automatic Speech Recognition System Performance on d/Deaf and Hard of Hearing Speech. Zhao R, Choi ASG, Koenecke A, Rameau A The Laryngoscope 39157956 Laryngoscope 2025 Jan https://www.ncbi.nlm.nih.gov/pubmed/39157956
A Deep-Learning Model for Multi-class Audio Classification of Vocal Fold Pathologies in Office Stroboscopy. Kim YE, Dobko M, Li H, Shao T, Periyakoil P, Tipton C, Colasacco C, Serpedin A, Elemento O, Sabuncu M, Pitman M, Sulica L, Rameau A The Laryngoscope 39907244 Laryngoscope 2025 Jul https://www.ncbi.nlm.nih.gov/pubmed/39907244
Voice Meets Swallowing: A Scoping Review of Therapeutic Connections. Castillo-Allendes A, Searl J, Vergara J, Ballentine N, Ebdah S, Rameau A, Hunter EJ American journal of speech-language pathology 39772835 Am J Speech Lang Pathol 2025 Mar 10 https://www.ncbi.nlm.nih.gov/pubmed/39772835
Assessing Otolaryngology Capacity in Sub-Saharan Africa: Flexible Laryngoscope Availability and Use. He L, Biskaduros A, Clark C, Ndadi J, Nkya A, Muganda E, Zimani P, Chidziva C, Rameau A Journal of voice : official journal of the Voice Foundation 40803928 J Voice 2025 Aug 12 https://www.ncbi.nlm.nih.gov/pubmed/40803928
An Intelligent Infrastructure as a Foundation for Modern Science. Ghosh S ArXiv 40832056 ArXiv 2025 Aug 12 https://www.ncbi.nlm.nih.gov/pubmed/40832056
Complete Resolution of Persistent Globus Pharyngeus Using Cervical Plexus Block: A Case Report. Biskaduros A, Jotwani R, Rameau A The Laryngoscope 41230659 Laryngoscope 2026 Apr https://www.ncbi.nlm.nih.gov/pubmed/41230659
Decoding Gender in Cough Sounds: A Transformer-Based Analysis. He L, Li H, Wang S, Baik E, Kervin S, Zhao R, Ramos JM, Bridge2AI‐Voice Consortium, Colonel J, Rameau A The Laryngoscope 41588706 Laryngoscope 2026 Jan 26 https://www.ncbi.nlm.nih.gov/pubmed/41588706
Elective Surgery Trends and Outcomes of Nonagenarians and Centenarians in Otolaryngology-Head and Neck Surgery: A NSQIP Study. Srinivasan Y, Briano J, Czaja S, Lachs MS, Rosen AE, Stewart MG, Rameau A The Laryngoscope 38587164 Laryngoscope 2024 Sep https://www.ncbi.nlm.nih.gov/pubmed/38587164
Validity of Acoustic Measures Obtained Using Various Recording Methods Including Smartphones With and Without Headset Microphones. Awan SN, Bahr R, Watts S, Boyer M, Budinsky R, Bridge2AI Voice Consortium, Bensoussan Y Journal of speech, language, and hearing research : JSLHR 38749007 J Speech Lang Hear Res 2024 Jun 6 https://www.ncbi.nlm.nih.gov/pubmed/38749007
Artificial Intelligence in Otolaryngology: Topics in Epistemology & Ethics. Tai K, Zhao R, Rameau A Otolaryngologic clinics of North America 38839555 Otolaryngol Clin North Am 2024 Oct https://www.ncbi.nlm.nih.gov/pubmed/38839555
Patient-Centered Equitable and Safe Artificial Intelligence in Otolaryngology-Head and Neck Surgery. Tai K, Zhao R, Rameau A Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 38943446 Otolaryngol Head Neck Surg 2024 Oct https://www.ncbi.nlm.nih.gov/pubmed/38943446
Validation of a 3D-Printed Percutaneous Injection Laryngoplasty Simulator: A Randomized Controlled Trial. Kostas JC, Lee AS, Arunkumar A, Han C, Lee M, Goel AN, Alrassi J, Crosby T, Clark CM, Amin M, Abu-Ghanem S, Kirke D, Rameau A The Laryngoscope 37466294 Laryngoscope 2024 Jan https://www.ncbi.nlm.nih.gov/pubmed/37466294
Virtual Reality for Pain Management During High-Resolution Manometry: A Randomized Clinical Trial. Palte I, Stewart S, Rives H, Curtis JA, Enver N, Tritter A, Andreadis K, Mocchetti V, Schnoll-Sussman F, Soumekh A, Zarnegar R, Katz P, Rameau A The Laryngoscope 37497865 Laryngoscope 2024 Mar https://www.ncbi.nlm.nih.gov/pubmed/37497865
Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews. Zavalis EA, Rameau A, Saraswathula A, Vist J, Schuit E, Ioannidis JPA medRxiv : the preprint server for health sciences 36778340 medRxiv 2023 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/36778340
Artificial Intelligence Governance and Otolaryngology-Head and Neck Surgery. Nwosu OI, Crowson MG, Rameau A The Laryngoscope 37658749 Laryngoscope 2023 Nov https://www.ncbi.nlm.nih.gov/pubmed/37658749
Cough Sounds in Screening and Diagnostics: A Scoping Review. Hegde S, Sreeram S, Alter IL, Shor C, Valdez TA, Meister KD, Rameau A The Laryngoscope 37672667 Laryngoscope 2024 Mar https://www.ncbi.nlm.nih.gov/pubmed/37672667
Association between Neuroligin-1 polymorphism and plasma glutamine levels in individuals with autism spectrum disorder. Lee IH, Walker DI, Lin Y, Smith MR, Mandl KD, Jones DP, Kong SW EBioMedicine 37544204 EBioMedicine 2023 Sep https://www.ncbi.nlm.nih.gov/pubmed/37544204
Female Surgical Ergonomics in Otolaryngology: A National Survey Study. Morse E, Tai K, Harpel L, Born H, Krishna P, Rameau A Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 37890071 Otolaryngol Head Neck Surg 2024 Mar https://www.ncbi.nlm.nih.gov/pubmed/37890071
Digital health technologies in swallowing care from screening to rehabilitation: A narrative review. Alter IL, Dias C, Briano J, Rameau A Auris, nasus, larynx 40403345 Auris Nasus Larynx 2025 Aug https://www.ncbi.nlm.nih.gov/pubmed/40403345
Eating and swallowing care disparities in persons with dementia: A conceptual framework. Loy RD, Rogus-Pulia N, Ketchum F, Troche M, Rameau A, Jones HN, Riquelme L, Gilmore-Bykovskyi A, Shah MN, Kind A Alzheimer's & dementia : the journal of the Alzheimer's Association 40008923 Alzheimers Dement 2025 Feb https://www.ncbi.nlm.nih.gov/pubmed/40008923
Development of Machine Learning Copilot to Assist Novices in Learning Flexible Laryngoscopy. Miller ME, Witte D, Lina I, Walsh J, Rameau A, Bhatti NI The Laryngoscope 39363661 Laryngoscope 2025 Mar https://www.ncbi.nlm.nih.gov/pubmed/39363661
Catalyzing Health AI by Fixing Payment Systems. Razavian N, Batchu-Green P, Chowdhry V, Elemento O, Rajpurkar P, Saria S, Shah NH, Topol EJ NEJM AI 41695240 NEJM AI 2025 Dec https://www.ncbi.nlm.nih.gov/pubmed/41695240
Multi-dimensional patient acuity estimation with longitudinal EHR tokenization and flexible transformer networks. Shickel B, Silva B, Ozrazgat-Baslanti T, Ren Y, Khezeli K, Guan Z, Tighe PJ, Bihorac A, Rashidi P Frontiers in digital health 36440460 Front Digit Health 2022 https://www.ncbi.nlm.nih.gov/pubmed/36440460
Forecasting algorithms in the ICU. Rooney SR, Clermont G Journal of electrocardiology 37883866 J Electrocardiol 2023 Nov-Dec https://www.ncbi.nlm.nih.gov/pubmed/37883866
Drop the shortcuts: image augmentation improves fairness and decreases AI detection of race and other demographics from medical images. Wang R, Kuo PC, Chen LC, Seastedt KP, Gichoya JW, Celi LA EBioMedicine 38471396 EBioMedicine 2024 Apr https://www.ncbi.nlm.nih.gov/pubmed/38471396
Competing interests: digital health and indigenous data sovereignty. Cordes A, Bak M, Lyndon M, Hudson M, Fiske A, Celi LA, McLennan S NPJ digital medicine 38965365 NPJ Digit Med 2024 Jul 4 https://www.ncbi.nlm.nih.gov/pubmed/38965365
Deriving Automated Device Metadata From Intracranial Pressure Waveforms: A Transforming Research and Clinical Knowledge in Traumatic Brain Injury ICU Physiology Cohort Analysis. Ack SE, Dolmans RGF, Foreman B, Manley GT, Rosenthal ES, Zabihi M Critical care explorations 39016273 Crit Care Explor 2024 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/39016273
ClotCatcher: a novel natural language model to accurately adjudicate venous thromboembolism from radiology reports. Wang J, de Vale JS, Gupta S, Upadhyaya P, Lisboa FA, Schobel SA, Elster EA, Dente CJ, Buchman TG, Kamaleswaran R BMC medical informatics and decision making 37974186 BMC Med Inform Decis Mak 2023 Nov 16 https://www.ncbi.nlm.nih.gov/pubmed/37974186
Peer review of GPT-4 technical report and systems card. Gallifant J, Fiske A, Levites Strekalova YA, Osorio-Valencia JS, Parke R, Mwavu R, Martinez N, Gichoya JW, Ghassemi M, Demner-Fushman D, McCoy LG, Celi LA, Pierce R PLOS digital health 38236824 PLOS Digit Health 2024 Jan https://www.ncbi.nlm.nih.gov/pubmed/38236824
Artificial intelligence in healthcare: Opportunities come with landmines. Iqbal U, Hsu YE, Celi LA, Li YJ BMJ health & care informatics 38839426 BMJ Health Care Inform 2024 Jun 5 https://www.ncbi.nlm.nih.gov/pubmed/38839426
Utility and rationale for continuous EEG monitoring: a primer for the general intensivist. Bitar R, Khan UM, Rosenthal ES Critical care (London, England) 39014421 Crit Care 2024 Jul 16 https://www.ncbi.nlm.nih.gov/pubmed/39014421
The effect of using a large language model to respond to patient messages. Chen S, Guevara M, Moningi S, Hoebers F, Elhalawani H, Kann BH, Chipidza FE, Leeman J, Aerts HJWL, Miller T, Savova GK, Gallifant J, Celi LA, Mak RH, Lustberg M, Afshar M, Bitterman DS The Lancet. Digital health 38664108 Lancet Digit Health 2024 Jun https://www.ncbi.nlm.nih.gov/pubmed/38664108
Building health systems capable of leveraging AI: applying Paul Farmer's 5S framework for equitable global health. McCoy LG, Bihorac A, Celi LA, Elmore M, Kewalramani D, Kwaga T, Martinez-Martin N, Prôa R, Schamroth J, Shaffer JD, Youssef A, Fiske A BMC global and public health 40312417 BMC Glob Public Health 2025 May 2 https://www.ncbi.nlm.nih.gov/pubmed/40312417
A Quantitative Electroencephalographic Index for Stroke Detection in Adults. Caffarelli M, Simmons R, Tolokh I, Karukonda V, Guterman EL, Smith W, Fox CK, Westover MB, Amorim E Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society 40048377 J Clin Neurophysiol 2026 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/40048377
Septic Shock Requiring Three Vasopressors: Patient Demographics and Outcomes. Kwak GH, Madushani RWMA, Adhikari L, Yan AY, Rosenthal ES, Sebbane K, Yanes Z, Restrepo D, Wong A, Celi LA, Kistler EA Critical care explorations 39513987 Crit Care Explor 2024 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/39513987
Ethical debates amidst flawed healthcare artificial intelligence metrics. Gallifant J, Bitterman DS, Celi LA, Gichoya JW, Matos J, McCoy LG, Pierce RL NPJ digital medicine 39261642 NPJ Digit Med 2024 Sep 11 https://www.ncbi.nlm.nih.gov/pubmed/39261642
Potential source of bias in AI models: lactate measurement in the ICU in sepsis patients as a template. Pradhan P, Haug FW, Abu Hussein NS, Moukheiber D, Moukheiber L, Moukheiber M, Moukheiber S, Weishaupt LL, Ellen JG, D'Couto H, Williams IC, Celi LA, Matos J, Struja T Frontiers in medicine 40703300 Front Med (Lausanne) 2025 https://www.ncbi.nlm.nih.gov/pubmed/40703300
External Validation of the Fraser Equation for Estimation of Free Valproate Concentrations in Critically Ill Adults. Webb AJ, Brown CS, Liu J, Riker RR, Lopez ND, Rosenthal ES, Zafar SF, Gagnon DJ Pharmacotherapy 41246825 Pharmacotherapy 2025 Dec https://www.ncbi.nlm.nih.gov/pubmed/41246825
Minimizing bias when using artificial intelligence in critical care medicine. Ranard BL, Park S, Jia Y, Zhang Y, Alwan F, Celi LA, Lusczek ER Journal of critical care 38552451 J Crit Care 2024 Aug https://www.ncbi.nlm.nih.gov/pubmed/38552451
Dynamic Delirium Prediction in the Intensive Care Unit using Machine Learning on Electronic Health Records. Contreras M, Silva B, Shickel B, Bandyopadhyay S, Guan Z, Ren Y, Ozrazgat-Baslanti T, Khezeli K, Bihorac A, Rashidi P ... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics 38585187 IEEE EMBS Int Conf Biomed Health Inform 2023 Oct https://www.ncbi.nlm.nih.gov/pubmed/38585187
Social Determinants of Health and Limitation of Life-Sustaining Therapy in Neurocritical Care: A CHoRUS Pilot Project. Kwak GH, Kamdar HA, Douglas MJ, Hu H, Ack SE, Lissak IA, Williams AE, Yechoor N, Rosenthal ES Neurocritical care 38844599 Neurocrit Care 2024 Dec https://www.ncbi.nlm.nih.gov/pubmed/38844599
Navigating the Complexities of Artificial Intelligence-Enabled Real-World Data Collection for Oncology Pharmacovigilance. Gallifant J, Celi LA, Sharon E, Bitterman DS JCO clinical cancer informatics 38713889 JCO Clin Cancer Inform 2024 May https://www.ncbi.nlm.nih.gov/pubmed/38713889
Detecting and Mitigating the Clever Hans Effect in Medical Imaging: A Scoping Review. Vásquez-Venegas C, Wu C, Sundar S, Prôa R, Beloy FJ, Medina JR, McNichol M, Parvataneni K, Kurtzman N, Mirshawka F, Aguirre-Jerez M, Ebner DK, Celi LA Journal of imaging informatics in medicine 39643820 J Imaging Inform Med 2025 Aug https://www.ncbi.nlm.nih.gov/pubmed/39643820
Potential source of bias in AI models: Lactate measurement in the ICU as a template. Hussein NSA, Pradhan P, Haug FW, Moukheiber D, Moukheiber L, Moukheiber M, Moukheiber S, Weishaupt LL, Ellen JG, D'Couto H, Williams IC, Celi LA, Matos J, Struja T Research square 39975902 Res Sq 2025 Feb 6 https://www.ncbi.nlm.nih.gov/pubmed/39975902
Cross-Care: Assessing the Healthcare Implications of Pre-training Data on Language Model Bias. Chen S, Gallifant J, Gao M, Moreira P, Munch N, Muthukkumar A, Rajan A, Kolluri J, Fiske A, Hastings J, Aerts H, Anthony B, Celi LA, La Cava WG, Bitterman DS Advances in neural information processing systems 40313683 Adv Neural Inf Process Syst 2024 https://www.ncbi.nlm.nih.gov/pubmed/40313683
Electronic Health Record Data Quality and Performance Assessments: Scoping Review. Penev YP, Buchanan TR, Ruppert MM, Liu M, Shekouhi R, Guan Z, Balch J, Ozrazgat-Baslanti T, Shickel B, Loftus TJ, Bihorac A JMIR medical informatics 39504136 JMIR Med Inform 2024 Nov 6 https://www.ncbi.nlm.nih.gov/pubmed/39504136
CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-ray. Lin M, Holste G, Wang S, Zhou Y, Wei Y, Banerjee I, Chen P, Dai T, Du Y, Dvornek NC, Ge Y, Guo Z, Hanaoka S, Kim D, Messina P, Lu Y, Parra D, Son D, Soto Á, Urooj A, Vidal R, Yamagishi Y, Yang Z, Zhang R, Zhou Y, Celi LA, Summers RM, Lu Z, Chen H, Flanders A, Shih G, Wang Z, Peng Y ArXiv 40735106 ArXiv 2025 Jun 9 https://www.ncbi.nlm.nih.gov/pubmed/40735106
The TRIPOD-LLM reporting guideline for studies using large language models: a Korean translation. Gallifant J, Afshar M, Ameen S, Aphinyanaphongs Y, Chen S, Cacciamani G, Demner-Fushman D, Dligach D, Daneshjou R, Fernandes C, Hansen LH, Landman A, Lehmann L, McCoy LG, Miller T, Moreno A, Munch N, Restrepo D, Savova G, Umeton R, Gichoya JW, Collins GS, Moons KGM, Celi LA, Bitterman DS Ewha medical journal 40739974 Ewha Med J 2025 Jul https://www.ncbi.nlm.nih.gov/pubmed/40739974
Practice Standards for the Use of Multimodality Neuromonitoring: A Delphi Consensus Process. Foreman B, Kapinos G, Wainwright MS, Ngwenya LB, O'Phelan KH, LaRovere KL, Kirschen MP, Appavu B, Lazaridis C, Alkhachroum A, Maciel CB, Amorim E, Chang JJ, Gilmore EJ, Rosenthal ES, Park S Critical care medicine 37607072 Crit Care Med 2023 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/37607072
DF-DM: A foundational process model for multimodal data fusion in the artificial intelligence era. Restrepo D, Wu C, Vásquez-Venegas C, Nakayama LF, Celi LA, López DM Research square 38746100 Res Sq 2024 Apr 23 https://www.ncbi.nlm.nih.gov/pubmed/38746100
Digital health and acute kidney injury: consensus report of the 27th Acute Disease Quality Initiative workgroup. Kashani KB, Awdishu L, Bagshaw SM, Barreto EF, Claure-Del Granado R, Evans BJ, Forni LG, Ghosh E, Goldstein SL, Kane-Gill SL, Koola J, Koyner JL, Liu M, Murugan R, Nadkarni GN, Neyra JA, Ninan J, Ostermann M, Pannu N, Rashidi P, Ronco C, Rosner MH, Selby NM, Shickel B, Singh K, Soranno DE, Sutherland SM, Bihorac A, Mehta RL Nature reviews. Nephrology 37580570 Nat Rev Nephrol 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/37580570
A toolbox for surfacing health equity harms and biases in large language models. Pfohl SR, Cole-Lewis H, Sayres R, Neal D, Asiedu M, Dieng A, Tomasev N, Rashid QM, Azizi S, Rostamzadeh N, McCoy LG, Celi LA, Liu Y, Schaekermann M, Walton A, Parrish A, Nagpal C, Singh P, Dewitt A, Mansfield P, Prakash S, Heller K, Karthikesalingam A, Semturs C, Barral J, Corrado G, Matias Y, Smith-Loud J, Horn I, Singhal K Nature medicine 39313595 Nat Med 2024 Dec https://www.ncbi.nlm.nih.gov/pubmed/39313595
Why federated learning will do little to overcome the deeply embedded biases in clinical medicine. Sauer CM, Pucher G, Celi LA Intensive care medicine 38829532 Intensive Care Med 2024 Aug https://www.ncbi.nlm.nih.gov/pubmed/38829532
Efficiency and safety of high-dose undiluted intravenous push levetiracetam loading doses compared to intravenous infusion in seizing patients: A retrospective cohort study. Koons M, Koehl J, Johnson R, Rosenthal ES, Webb AJ Epilepsia 39126370 Epilepsia 2024 Oct https://www.ncbi.nlm.nih.gov/pubmed/39126370
Does diversity beget diversity? A scientometric analysis of over 150,000 studies and 49,000 authors published in high-impact medical journals between 2007 and 2022. Charpignon ML, Matos J, Nakayama L, Gallifant J, Alfonso PGI, Cobanaj M, Fiske A, Gates AJ, Ho FDV, Jain U, Kashkooli M, McCoy LG, Shaffer J, Link Woite N, Celi LA medRxiv : the preprint server for health sciences 38562711 medRxiv 2024 Mar 22 https://www.ncbi.nlm.nih.gov/pubmed/38562711
BRSET: A Brazilian Multilabel Ophthalmological Dataset of Retina Fundus Photos. Nakayama LF, Restrepo D, Matos J, Ribeiro LZ, Malerbi FK, Celi LA, Regatieri CS medRxiv : the preprint server for health sciences 38343827 medRxiv 2024 Jan 23 https://www.ncbi.nlm.nih.gov/pubmed/38343827
Building a house without foundations? A 24-country qualitative interview study on artificial intelligence in intensive care medicine. McLennan S, Fiske A, Celi LA BMJ health & care informatics 38642921 BMJ Health Care Inform 2024 Apr 19 https://www.ncbi.nlm.nih.gov/pubmed/38642921
Differences in Arterial Blood Gas Testing by Race and Sex across 161 U.S. Hospitals in Four Electronic Health Record Databases. Matos J, Alwakeel M, Hao S, Naamani D, Struja T, Gichoya JW, Celi LA, McMahon T, King HA, Cox CE, Kibbe WA, Hong C, Wong AI American journal of respiratory and critical care medicine 40126408 Am J Respir Crit Care Med 2025 Jun https://www.ncbi.nlm.nih.gov/pubmed/40126408
Clinical Consequences of Disproportionate Free Valproate Elevation in Critically Ill Adult Patients: A Multicenter Retrospective Cohort Study. Webb AJ, Gagnon DJ, Brown CS, Riker RR, Lopez ND, Goodberlet MZ, Schontz MJ, Marino KK, Zafar SF, Rosenthal ES Neurocritical care 40133756 Neurocrit Care 2025 Oct https://www.ncbi.nlm.nih.gov/pubmed/40133756
Toward a Universal Map of EEG: A Semantic, Low-Dimensional Manifold for EEG Classification, Clustering, and Prognostication. Krumm L, Kranz DD, Halimeh M, Nelde A, Amorim E, Zafar S, Jing J, Thomas RJ, Westover MB, Meisel C Annals of neurology 40539771 Ann Neurol 2025 Aug https://www.ncbi.nlm.nih.gov/pubmed/40539771
Implementing Artificial Intelligence in Critical Care Medicine: a consensus of 22. Cecconi M, Greco M, Shickel B, Angus DC, Bailey H, Bignami E, Calandra T, Celi LA, Einav S, Elbers P, Ercole A, Gómez H, Gong MN, Komorowski M, Liu V, Park S, Sarwal A, Seymour CW, Zampieri FG, Taccone FS, Vincent JL, Bihorac A Critical care (London, England) 40629428 Crit Care 2025 Jul 8 https://www.ncbi.nlm.nih.gov/pubmed/40629428
Raising awareness of potential biases in medical machine learning: Experience from a Datathon. Hochheiser H, Klug J, Mathie T, Pollard TJ, Raffa JD, Ballard SL, Conrad EA, Edakalavan S, Joseph A, Alnomasy N, Nutman S, Hill V, Kapoor S, Claudio EP, Kravchenko OV, Li R, Nourelahi M, Diaz J, Taylor WM, Rooney SR, Woeltje M, Celi LA, Horvat CM PLOS digital health 40644462 PLOS Digit Health 2025 Jul https://www.ncbi.nlm.nih.gov/pubmed/40644462
CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-ray. Lin M, Holste G, Wang S, Zhou Y, Wei Y, Banerjee I, Chen P, Dai T, Du Y, Dvornek NC, Ge Y, Guo Z, Hanaoka S, Kim D, Messina P, Lu Y, Parra D, Son D, Soto Á, Urooj A, Vidal R, Yamagishi Y, Yan P, Yang Z, Zhang R, Zhou Y, Celi LA, Summers RM, Lu Z, Chen H, Flanders A, Shih G, Wang Z, Peng Y Medical image analysis 40795541 Med Image Anal 2025 Dec https://www.ncbi.nlm.nih.gov/pubmed/40795541
Equipping mathematical models for hospital dynamics using information theory. Balch JA, Brandberg JG, Andris RT, Mesner IG, Nametz DC, Megjhani M, Ruppert MM, Hu D, Clark MT, Shickel B, Ranard BL, Delos JB, Albers DJ, Loftus TJ, Park S, Randall Moorman J NPJ digital medicine 41225138 NPJ Digit Med 2025 Nov 12 https://www.ncbi.nlm.nih.gov/pubmed/41225138
Co-creating Consent for Data Use - AI-Powered Ethics for Biomedical AI. Evans BJ, Bihorac A NEJM AI 40918051 NEJM AI 2024 Jul https://www.ncbi.nlm.nih.gov/pubmed/40918051
What is the ideal glucose range for a patient with sepsis in the ICU? A retrospective analysis of MIMIC-IV. Struja T, Hansen LH, Matos J, Gómez J, Pardo A, Lourentzou I, Hejazi N, Celi LA, Waschka AK BMJ open 41605594 BMJ Open 2026 Jan 28 https://www.ncbi.nlm.nih.gov/pubmed/41605594
Language Models are Surprisingly Fragile to Drug Names in Biomedical Benchmarks. Gallifant J, Chen S, Moreira P, Munch N, Gao M, Pond J, Aerts H, Celi LA, Hartvigsen T, Bitterman DS Findings of ACL. EMNLP. Conference on Empirical Methods in Natural Language Processing 41341631 Find ACL EMNLP 2024 Nov https://www.ncbi.nlm.nih.gov/pubmed/41341631
A multimodal framework for extraction and fusion of satellite images and public health data. Moukheiber D, Restrepo D, Cajas SA, Montoya MPA, Celi LA, Kuo KT, López DM, Moukheiber L, Moukheiber M, Moukheiber S, Osorio-Valencia JS, Purkayastha S, Paddo AR, Wu C, Kuo PC Scientific data 38879585 Sci Data 2024 Jun 15 https://www.ncbi.nlm.nih.gov/pubmed/38879585
Practice-Pattern Variation in Sedation of Neurotrauma Patients in the Intensive Care Unit: An International Survey. Dolmans RGF, Nahed BV, Robertson FC, Peul WC, Rosenthal ES, Broekman MLD Journal of intensive care medicine 37415510 J Intensive Care Med 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/37415510
Testing the 'Faith Moves Mountains model' to increase Alzheimer's disease awareness, detection, and diagnosis among rural, racially, and ethnically diverse older adults. Wiese LK, Williams IC, Holt JK, Williams CL, Lingler J, Galvin JE, Schoenberg NE Aging & mental health 38127408 Aging Ment Health 2024 Jun https://www.ncbi.nlm.nih.gov/pubmed/38127408
POSTCARDS from a SIESTA: Crossing the Translational and Generalizability Gap for Predictive Models of Acute Respiratory Distress Syndrome-Related Mortality. Wong AI, Kamaleswaran R Critical care medicine 37971334 Crit Care Med 2023 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/37971334
Continuous ECG monitoring should be the heart of bedside AI-based predictive analytics monitoring for early detection of clinical deterioration. Monfredi OJ, Moore CC, Sullivan BA, Keim-Malpass J, Fairchild KD, Loftus TJ, Bihorac A, Krahn KN, Dubrawski A, Lake DE, Moorman JR, Clermont G Journal of electrocardiology 36434848 J Electrocardiol 2023 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/36434848
Common Data Elements for Disorders of Consciousness: Recommendations from the Working Group on Physiology and Big Data. Beqiri E, Badjatia N, Ercole A, Foreman B, Hu P, Hu X, LaRovere K, Meyfroidt G, Moberg D, Robba C, Rosenthal ES, Smielewski P, Wainwright MS, Park S, Curing Coma Campaign and its Contributing Members Neurocritical care 37704934 Neurocrit Care 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/37704934
Raising awareness of potential biases in medical machine learning: Experience from a Datathon. Hochheiser H, Klug J, Mathie T, Pollard TJ, Raffa JD, Ballard SL, Conrad EA, Edakalavan S, Joseph A, Alnomasy N, Nutman S, Hill V, Kapoor S, Claudio EP, Kravchenko OV, Li R, Nourelahi M, Diaz J, Taylor WM, Rooney SR, Woeltje M, Celi LA, Horvat CM medRxiv : the preprint server for health sciences 39502657 medRxiv 2024 Nov 2 https://www.ncbi.nlm.nih.gov/pubmed/39502657
Harvard Electroencephalography Database: A comprehensive clinical electroencephalographic resource from four Boston hospitals. Sun C, Jing J, Turley N, Alcott C, Kang WY, Cole AJ, Goldenholz DM, Lam A, Amorim E, Chu C, Cash S, Junior VM, Gupta A, Ghanta M, Nearing B, Nascimento FA, Struck A, Kim J, Sartipi S, Tauton AM, Fernandes M, Sun H, Bayas G, Gallagher K, Wagenaar JB, Sinha N, Lee-Messer C, Silvers CT, Gunapati B, Rosand J, Peters J, Loddenkemper T, Lee JW, Zafar S, Westover MB Epilepsia 40464151 Epilepsia 2025 Sep https://www.ncbi.nlm.nih.gov/pubmed/40464151
The TRIPOD-LLM reporting guideline for studies using large language models. Gallifant J, Afshar M, Ameen S, Aphinyanaphongs Y, Chen S, Cacciamani G, Demner-Fushman D, Dligach D, Daneshjou R, Fernandes C, Hansen LH, Landman A, Lehmann L, McCoy LG, Miller T, Moreno A, Munch N, Restrepo D, Savova G, Umeton R, Gichoya JW, Collins GS, Moons KGM, Celi LA, Bitterman DS Nature medicine 39779929 Nat Med 2025 Jan https://www.ncbi.nlm.nih.gov/pubmed/39779929
Evaluating the feasibility of prehospital point-of-care EEG: The prehospital implementation of rapid EEG (PHIRE) study. Guterman EL, Mercer MP, Wood AJ, Amorim E, Kleen JK, Gerard D, Kellison C, Yamashita S, Auerbach B, Joshi N, Sporer KA Journal of the American College of Emergency Physicians open 39281726 J Am Coll Emerg Physicians Open 2024 Oct https://www.ncbi.nlm.nih.gov/pubmed/39281726
GRACE-ICU: A multimodal nomogram-based approach for illness severity assessment of older adults in the ICU. Liu X, Yeung W, Chen Z, Hao S, Yang Z, Sun X, Liu C, Mao Z, Yan M, Yan W, Cao D, Feng M, Li D, Zhang Z, Celi LA NPJ digital medicine 40804187 NPJ Digit Med 2025 Aug 13 https://www.ncbi.nlm.nih.gov/pubmed/40804187
Multi-View Echocardiographic Embedding for Accessible AI Development. Tohyama T, Han A, Yoon D, Paik K, Gow B, Izath N, Kpodonu J, Celi LA medRxiv : the preprint server for health sciences 40894133 medRxiv 2025 Oct 29 https://www.ncbi.nlm.nih.gov/pubmed/40894133
Contextual nonmedical health factors and critical care-related outcomes: a systematic review. Adiyeke E, Fleeting C, Davidson A, Sree Vedala SA, Johnson C, Uddin R, Newsom M, Guo SJ, Guo Y, Ozrazgat-Baslanti T, Bihorac A Critical care (London, England) 41354824 Crit Care 2025 Dec 7 https://www.ncbi.nlm.nih.gov/pubmed/41354824
Trends and practices following the 2016 hydroxychloroquine screening guidelines. Kalaw FGP, Arnett J, Baxter SL, Walker E, Pedersen B, Borooah S Scientific reports 37730825 Sci Rep 2023 Sep 20 https://www.ncbi.nlm.nih.gov/pubmed/37730825
Developing a Continuous Severity Scale for Macular Telangiectasia Type 2 Using Deep Learning and Implications for Disease Grading. Wu Y, Egan C, Olvera-Barrios A, Scheppke L, Peto T, Charbel Issa P, Heeren TFC, Leung I, Rajesh AE, Tufail A, Lee CS, Chew EY, Friedlander M, Lee AY Ophthalmology 37739233 Ophthalmology 2024 Feb https://www.ncbi.nlm.nih.gov/pubmed/37739233
Disparities in Eye Care Utilization Among Refugee and Migrant Populations. Copado IA, Hallaj S, Radha Saseendrakumar B, Baxter SL Translational vision science & technology 38376863 Transl Vis Sci Technol 2024 Feb 1 https://www.ncbi.nlm.nih.gov/pubmed/38376863
ARTIFICIAL INTELLIGENCE FOR OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY-BASED DISEASE ACTIVITY PREDICTION IN AGE-RELATED MACULAR DEGENERATION. Heinke A, Zhang H, Deussen D, Galang CMB, Warter A, Kalaw FGP, Bartsch DG, Cheng L, An C, Nguyen T, Freeman WR Retina (Philadelphia, Pa.) 37988102 Retina 2024 Mar 1 https://www.ncbi.nlm.nih.gov/pubmed/37988102
Large language models and their impact in ophthalmology. Betzler BK, Chen H, Cheng CY, Lee CS, Ning G, Song SJ, Lee AY, Kawasaki R, van Wijngaarden P, Grzybowski A, He M, Li D, Ran Ran A, Ting DSW, Teo K, Ruamviboonsuk P, Sivaprasad S, Chaudhary V, Tadayoni R, Wang X, Cheung CY, Zheng Y, Wang YX, Tham YC, Wong TY The Lancet. Digital health 38000875 Lancet Digit Health 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/38000875
Evaluating Access to Laser Eye Surgery by Driving Times Using Medicare Data and Geographical Mapping. Shaffer J, Rajesh A, Stewart MW, Lee AY, Miller DD, Lee CS, Francis CE JAMA ophthalmology 37471084 JAMA Ophthalmol 2023 Aug 1 https://www.ncbi.nlm.nih.gov/pubmed/37471084
Foundation models in ophthalmology. Chia MA, Antaki F, Zhou Y, Turner AW, Lee AY, Keane PA The British journal of ophthalmology 38834291 Br J Ophthalmol 2024 Sep 20 https://www.ncbi.nlm.nih.gov/pubmed/38834291
A Clinician's Guide to Sharing Data for AI in Ophthalmology. Gim N, Wu Y, Blazes M, Lee CS, Wang RK, Lee AY Investigative ophthalmology & visual science 38864811 Invest Ophthalmol Vis Sci 2024 Jun 3 https://www.ncbi.nlm.nih.gov/pubmed/38864811
A review of ophthalmology education in the era of generative artificial intelligence. Heinke A, Radgoudarzi N, Huang BB, Baxter SL Asia-Pacific journal of ophthalmology (Philadelphia, Pa.) 39134176 Asia Pac J Ophthalmol (Phila) 2024 Jul-Aug https://www.ncbi.nlm.nih.gov/pubmed/39134176
RETINAL VESSELS WHITENING IN RETINITIS PIGMENTOSA. Yassin SH, Wagner NE, Kalaw FGP, Sharma P, Arias JD, Tran M, Nagel I, Walker E, Borooah S Retina (Philadelphia, Pa.) 40262144 Retina 2025 May 1 https://www.ncbi.nlm.nih.gov/pubmed/40262144
Variations in Using Diagnosis Codes for Defining Age-Related Macular Degeneration Cohorts. Kalaw FGP, Chen JS, Baxter SL Informatics (MDPI) 40012991 Informatics (MDPI) 2024 Jun https://www.ncbi.nlm.nih.gov/pubmed/40012991
Developing a 10-Layer Retinal Segmentation for MacTel Using Semi-Supervised Learning. Verma A, Tzaridis S, Blazes M, Friedlander M, Lee AY, Wu Y Translational vision science & technology 39499591 Transl Vis Sci Technol 2024 Nov 4 https://www.ncbi.nlm.nih.gov/pubmed/39499591
Retinal Vessel Plexus Differentiation Based on OCT Angiography Using Deep Learning. Shaffer JL, De Sisternes L, Rajesh AE, Blazes MS, Kihara Y, Lee CS, Lewis WH, Goldberg RA, Manivannan N, Lee AY Ophthalmology science 39624795 Ophthalmol Sci 2025 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/39624795
Predictors of Health Care Disparities in Fuchs Dystrophy Treatment Using the IRIS Registry. Jiang Y, Davidson O, Blazes M, Rajesh AE, Lomazow W, Bagsadarova Y, Lee AY, Lee CS, Sundararajan M, IRIS Registry Analytic Center Consortium Cornea 39778162 Cornea 2026 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/39778162
AI-READI: rethinking AI data collection, preparation and sharing in diabetes research and beyond. AI-READI Consortium Nature metabolism 39516364 Nat Metab 2024 Dec https://www.ncbi.nlm.nih.gov/pubmed/39516364
Comparison of a Novel Ultra-Widefield Three-Color Scanning Laser Ophthalmoscope to Other Retinal Imaging Modalities in Chorioretinal Lesion Imaging. Nagel ID, Heinke A, Agnihotri AP, Yassin S, Cheng L, Camp AS, Scott NL, Kalaw FGP, Borooah S, Bartsch DG, Mueller AJ, Mehta N, Freeman WR Translational vision science & technology 39804659 Transl Vis Sci Technol 2025 Jan 2 https://www.ncbi.nlm.nih.gov/pubmed/39804659
Automated Quantitative Assessment of Retinal Vascular Tortuosity in Patients with Sickle Cell Disease. Chen JS, Kalaw FGP, Nudleman ED, Scott NL Ophthalmology science 39886358 Ophthalmol Sci 2025 Mar-Apr https://www.ncbi.nlm.nih.gov/pubmed/39886358
Dry eye disease treatment improves subjective quality-of-life responses in patients with AMD, independent of disease stage. Mehta NN, Nagel ID, Agnihotri A, Heinke A, Cheng L, Bartsch DU, Freeman WR, Gomez ML PloS one 39913504 PLoS One 2025 https://www.ncbi.nlm.nih.gov/pubmed/39913504
Enhancing diagnostic accuracy in rare and common fundus diseases with a knowledge-rich vision-language model. Wang M, Lin T, Lin A, Yu K, Peng Y, Wang L, Chen C, Zou K, Liang H, Chen M, Yao X, Zhang M, Huang B, Zheng C, Zhang P, Chen W, Luo Y, Chen Y, Xia H, Shi T, Zhang Q, Guo J, Chen X, Wang J, Tham YC, Liu D, Wong W, Thakur S, Fenner BJ, Fang D, Liu S, Liu Q, Huang Y, Zeng H, Meng Y, Zhou Y, Jiang Z, Qiu M, Zhang C, Chen X, Wang SY, Lee CS, Sobrin L, Cheung CY, Pang CP, Keane PA, Cheng CY, Chen H, Fu H Nature communications 40592857 Nat Commun 2025 Jul 1 https://www.ncbi.nlm.nih.gov/pubmed/40592857
Systemic Carbonic Anhydrase Inhibitors in Common Ophthalmic Diseases: A Scoping Review from A Clinical Standpoint. Hallaj S, Shalaby WS, Sinha S, Myers JS, Razeghinejad R Current ophthalmology reports 40642047 Curr Ophthalmol Rep 2025 https://www.ncbi.nlm.nih.gov/pubmed/40642047
Next-generation phenotyping of inherited retinal diseases from multimodal imaging with Eye2Gene. Pontikos N, Woof WA, Lin S, Ghoshal B, Mendes BS, Veturi A, Nguyen Q, Javanmardi B, Georgiou M, Hustinx A, Ibarra-Arellano MA, Moghul I, Liu Y, Pfau K, Pfau M, Shah M, Yu J, Al-Khuzaei S, Wagner SK, Daich Varela M, Cabral de Guimarães TA, Sen S, Naik G, Sumodhee D, Fu DJ, Kabiri N, Furman J, Liefers B, Lee AY, De Silva SR, Marques C, Motta F, Fujinami-Yokokawa Y, Hardcastle AJ, Arno G, Lorenz B, Herrmann P, Fujinami K, Sallum J, Madhusudhan S, Downes SM, Holz FG, Balaskas K, Webster AR, Mahroo OA, Krawitz PM, Michaelides M Nature machine intelligence 40567353 Nat Mach Intell 2025 https://www.ncbi.nlm.nih.gov/pubmed/40567353
Glaucoma Detection and Structured OCT Report Generation via a Fine-tuned Multimodal Large Language Model. Jalili J, Gavhane Y, Walker E, Heinke A, Bowd C, Belghith A, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Baxter SL, Weinreb RN, Zangwill LM, Christopher M ArXiv 41256877 ArXiv 2025 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/41256877
Performance of General-Purpose Vision Language Models and Ophthalmology Foundation Models in Glaucoma Detection and Function Prediction. Jalili J, Huynh J, Walker E, Chuter BG, Bowd C, Heinke A, Belghith A, Goldbaum MH, Fazio MA, Girkin CA, De Moraes CG, Liebmann JM, Baxter SL, Weinreb RN, Zangwill LM, Christopher M Translational vision science & technology 41258693 Transl Vis Sci Technol 2025 Nov 3 https://www.ncbi.nlm.nih.gov/pubmed/41258693
What will the future role for large language models (LLMs) be in managing patients with glaucoma? Tavakoli K, Hallaj S, Baxter SL Expert review of ophthalmology 40800545 Expert Rev Ophthalmol 2025 Jun https://www.ncbi.nlm.nih.gov/pubmed/40800545
High Myopia Normative Database of Peripapillary Retinal Nerve Fiber Layer Thickness to Detect Myopic Glaucoma in a Chinese Population. Song Y, Li F, Chong RS, Wang W, Ran AR, Lin F, Wang P, Wang Z, Jiang J, Kong K, Jin L, Chen M, Sun J, Wang D, Tham CC, Lam DSC, Zangwill LM, Weinreb RN, Aung T, Jonas JB, Ohno-Matsui K, Cheng CY, Bressler NM, Sun X, Cheung CY, Chen S, Zhang X, Glaucoma Suspects with High Myopia Study Group Ophthalmology 37499953 Ophthalmology 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/37499953
Microperimetry Findings in Pentosan Polysulfate Maculopathy. Most J, Kalaw FGP, Walker E, Arias JD, Charng J, Baxter SL, Nudleman E, Ferreyra H, Freeman WR, Chen FK, Borooah S Ophthalmology. Retina 37619623 Ophthalmol Retina 2023 Nov https://www.ncbi.nlm.nih.gov/pubmed/37619623
Long-Term Surgical Outcomes of Glaucoma Drainage Implants in Eyes with Preoperative Intraocular Pressure Less than 19 mmHg. Hallaj S, Wong JC, Hock LE, Kolomeyer NN, Shukla AG, Pro MJ, Moster MR, Myers JS, Razeghinejad R, Lee D Journal of ophthalmology 38304290 J Ophthalmol 2024 https://www.ncbi.nlm.nih.gov/pubmed/38304290
Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. Kalaw FGP, Tavakoli K, Baxter SL Ophthalmology science 38025157 Ophthalmol Sci 2023 Dec https://www.ncbi.nlm.nih.gov/pubmed/38025157
Variations in Electronic Health Record-Based Definitions of Diabetic Retinopathy Cohorts: A Literature Review and Quantitative Analysis. Chen JS, Copado IA, Vallejos C, Kalaw FGP, Soe P, Cai CX, Toy BC, Borkar D, Sun CQ, Shantha JG, Baxter SL Ophthalmology science 38560278 Ophthalmol Sci 2024 Jul-Aug https://www.ncbi.nlm.nih.gov/pubmed/38560278
Ultra-wide field and new wide field composite retinal image registration with AI-enabled pipeline and 3D distortion correction algorithm. Kalaw FGP, Cavichini M, Zhang J, Wen B, Lin AC, Heinke A, Nguyen T, An C, Bartsch DG, Cheng L, Freeman WR Eye (London, England) 38114568 Eye (Lond) 2024 Apr https://www.ncbi.nlm.nih.gov/pubmed/38114568
Publicly available imaging datasets for age-related macular degeneration: Evaluation according to the Findable, Accessible, Interoperable, Reusable (FAIR) principles. Gim N, Ferguson A, Blazes M, Soundarajan S, Gasimova A, Jiang Y, Sánchez CI, Zalunardo L, Corradetti G, Elze T, Honda N, Waheed NK, Cairns AM, Canto-Soler MV, Domalpally A, Durbin M, Ferrara D, Hu J, Nair P, Lee AY, Sadda SR, Keenan TDL, Patel B, Lee CS, Ryan Initiative For Macular Research (RIMR) Consortium Experimental eye research 40089134 Exp Eye Res 2025 Jun https://www.ncbi.nlm.nih.gov/pubmed/40089134
Gap Analysis of Glaucoma Examination Concept Representations within Standard Systemized Nomenclature of Medicine - Clinical Terms. Hallaj S, Khawaja AP, Rodrigues IAS, Boland MV, Brown EN, Chen A, Stagg BC, Stein JD, Sun CQ, Mahe-Cook AL, Swaminathan SS, Wang SY, Xu BY, Weinreb RN, Baxter SL Ophthalmology. Glaucoma 39147325 Ophthalmol Glaucoma 2025 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/39147325
Large language models in ophthalmology: a scoping review on their utility for clinicians, researchers, patients, and educators. Artiaga JCM, Guevarra MCB, Sosuan GMN, Agnihotri AP, Nagel ID, Kalaw FGP Eye (London, England) 40855372 Eye (Lond) 2025 Oct https://www.ncbi.nlm.nih.gov/pubmed/40855372
Faricimab at 6 and 12 mg reduces pigment epithelium detachment in treatment-resistant macular neovascularization: an OCT and AI analysis. Nagel ID, Tran MD, Zhang H, Cheng L, Heinke A, Mehta NN, Bartsch DU, Kalaw FGP, Morsy M, Mueller AJ, Freeman WR Scientific reports 41028859 Sci Rep 2025 Sep 30 https://www.ncbi.nlm.nih.gov/pubmed/41028859
Deep Learning-Based Detection of Reticular Pseudodrusen in Age-Related Macular Degeneration. Kumar H, Bagdasarova Y, Song S, Hickey DG, Cohn AC, Okada M, Finger RP, Terheyden JH, Hogg RE, Gabrielle PH, Arnould L, Jannaud M, Hadoux X, van Wijngaarden P, Abbott CJ, Hodgson LAB, Schwartz R, Tufail A, Chew EY, Lee CS, Fletcher EL, Bahlo M, Ansell BRE, Pébay A, Guymer RH, Lee AY, Wu Z Clinical & experimental ophthalmology 40922557 Clin Exp Ophthalmol 2026 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/40922557
A Data-driven Age-related Macular Degeneration Severity Scoring System Leveraging the AREDS Studies and Clinical Electronic Medical Records. Lee CS, Su YR, Walker RL, Krakauer C, Blazes M, Johnson EA, Cronkite D, Bowers W, Hess C, Arterburn D, Agrón E, Chew EY, Crane PK Ophthalmology 40311699 Ophthalmology 2025 Oct https://www.ncbi.nlm.nih.gov/pubmed/40311699
High Prevalence of Artifacts in Optical Coherence Tomography With Adequate Signal Strength. Lin WC, Coyner AS, Amankwa CE, Lucero A, Wollstein G, Schuman JS, Ishikawa H Translational vision science & technology 39196579 Transl Vis Sci Technol 2024 Aug 1 https://www.ncbi.nlm.nih.gov/pubmed/39196579
Association Between Glucagon-Like Peptide-1 Receptor Agonists Exposure and Intraocular Pressure Change: GLP-1 Receptor Agonists and Intraocular Pressure Change. Hallaj S, Halfpenny W, Chuter BG, Weinreb RN, Baxter SL, Cui QN American journal of ophthalmology 39237049 Am J Ophthalmol 2025 Jan https://www.ncbi.nlm.nih.gov/pubmed/39237049
Associations Between Physical Activity and Glaucoma: Analysis of the National Institutes of Health All of Us Research Program. Akarapimand P, Hallaj S, Weinreb RN, Baxter SL Journal of glaucoma 41370653 J Glaucoma 2026 Jan 1 https://www.ncbi.nlm.nih.gov/pubmed/41370653
Fostering Multidisciplinary Collaboration in Artificial Intelligence and Machine Learning Education: Tutorial Based on the AI-READI Bootcamp. Nishihara TW, Kalaw FGP, Engmann A, Motoyoshi A, Mensah-Kane P, Gupta D, Patronilo V, Zangwill LM, Hallaj S, Panahi A, Cottrell GW, Voytek B, de Sa VR, Baxter SL JMIR medical education 41461109 JMIR Med Educ 2025 Dec 29 https://www.ncbi.nlm.nih.gov/pubmed/41461109
Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. Wu Y, Olvera-Barrios A, Yanagihara R, Kung TH, Lu R, Leung I, Mishra AV, Nussinovitch H, Grimaldi G, Blazes M, Lee CS, Egan C, Tufail A, Lee AY Ophthalmology 36154868 Ophthalmology 2023 Feb https://www.ncbi.nlm.nih.gov/pubmed/36154868
Artificial Intelligence and Diabetic Retinopathy: AI Framework, Prospective Studies, Head-to-head Validation, and Cost-effectiveness. Rajesh AE, Davidson OQ, Lee CS, Lee AY Diabetes care 37729502 Diabetes Care 2023 Oct 1 https://www.ncbi.nlm.nih.gov/pubmed/37729502
Race, Ethnicity, Insurance, and Population Density Associations with Pediatric Strabismus and Strabismic Amblyopia in the IRIS® Registry. Rajesh AE, Davidson O, Lacy M, Chandramohan A, Lee AY, Lee CS, Tarczy-Hornoch K, IRIS® Registry Analytic Center Consortium Ophthalmology 37331481 Ophthalmology 2023 Oct https://www.ncbi.nlm.nih.gov/pubmed/37331481
Outer Retinal Thinning is Associated With Brain Atrophy in Early Age-Related Macular Degeneration. Jiang Y, Swain T, Gim N, Blazes M, Donald CM, Rokem A, Owen JP, Balu N, Clark ME, Goerdt L, McGwin G, Hunt D, Curcio CA, Levendovszky SR, Trittschuh EH, Owsley C, Lee CS American journal of ophthalmology 39369929 Am J Ophthalmol 2025 Jan https://www.ncbi.nlm.nih.gov/pubmed/39369929
Developing an image-based grading scale for peripheral drusen to investigate associations of peripheral drusen type with age-related macular degeneration. Sharma P, Kalaw FGP, Lin A, Walker EH, Borooah S Scientific reports 39198593 Sci Rep 2024 Aug 29 https://www.ncbi.nlm.nih.gov/pubmed/39198593
Effect of manual OCTA segmentation correction to improve image quality and visibility of choroidal neovascularization in AMD. Deussen DN, Heinke A, Elsner W, Galang CMB, Kalaw FGP, Warter A, Bartsch DU, Cheng L, Freeman WR Scientific reports 38886462 Sci Rep 2024 Jun 18 https://www.ncbi.nlm.nih.gov/pubmed/38886462
RETINAL STRUCTURAL CHANGES AFTER CESSATION OF PENTOSAN POLYSULFATE SODIUM. Kalaw FGP, Most J, Kako RN, Sharma P, Arias JD, Chen JS, Lin AC, Walker E, Bartsch DG, Baxter SL, Ferreyra H, Freeman WR, Borooah S Retina (Philadelphia, Pa.) 39174300 Retina 2024 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/39174300
Evaluating a Foundation Artificial Intelligence Model for Glaucoma Detection Using Color Fundus Photographs. Chuter B, Huynh J, Hallaj S, Walker E, Liebmann JM, Fazio MA, Girkin CA, Weinreb RN, Christopher M, Zangwill LM Ophthalmology science 39650567 Ophthalmol Sci 2025 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/39650567
Cross-sectional design and protocol for Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights (AI-READI). Owsley C, Matthies DS, McGwin G, Edberg JC, Baxter SL, Zangwill LM, Owen JP, Lee CS, AI-READI Consortium BMJ open 39915016 BMJ Open 2025 Feb 6 https://www.ncbi.nlm.nih.gov/pubmed/39915016
Retinal imaging in an era of open science and privacy protection. Gim N, Blazes M, Sánchez CI, Zalunardo L, Corradetti G, Elze T, Honda N, Waheed NK, Cairns AM, Canto-Soler MV, Domalpally A, Durbin M, Ferrara D, Hu J, Nair P, Sadda SR, Keenan TDL, Lee CS, RIMR Consortium Experimental eye research 40090567 Exp Eye Res 2025 Jun https://www.ncbi.nlm.nih.gov/pubmed/40090567
Quantification of Optical Coherence Tomography Features in >3500 Patients with Inherited Retinal Disease Reveals Novel Genotype-Phenotype Associations. Woof W, de Guimarães TAC, Al-Khuzaei S, Varela MD, Shah M, Naik G, Sen S, Bagga P, Mendes B, Chan YW, Lin S, Ghoshal B, Liefers B, Fu DJ, Georgiou M, da Silva AS, Nguyen Q, Liu Y, Sumodhee D, Fujinami-Yokokawa Y, Patel PJ, Furman J, Moghul I, Moosajee M, Sallum J, De Silva SR, Lorenz B, Herrmann P, Holz FG, Fujinami K, Webster AR, Mahroo OA, Downes SM, Madhusuhan S, Balaskas K, Michaelides M, Pontikos N medRxiv : the preprint server for health sciences 40630585 medRxiv 2025 Jul 3 https://www.ncbi.nlm.nih.gov/pubmed/40630585
Beyond convolutions and supervised learning with transformers and representation learning for retinal image analysis. Wu Y, Lee CS, Lee AY Progress in retinal and eye research 41352580 Prog Retin Eye Res 2026 Jan https://www.ncbi.nlm.nih.gov/pubmed/41352580
Eye Adult Changes in Thought (Eye ACT) Study: Design and Report on the Inaugural Cohort. Lee CS, Ferguson AN, Gibbons LE, Walker R, Su YR, Krakauer C, Brush M, Kam J, Larson EB, Arterburn DE, Crane PK, Eye ACT Study Group: Journal of Alzheimer's disease : JAD 38875039 J Alzheimers Dis 2024 https://www.ncbi.nlm.nih.gov/pubmed/38875039
Just how transformative will AI/ML be for immuno-oncology? Bottomly D, McWeeney S Journal for immunotherapy of cancer 38531545 J Immunother Cancer 2024 Mar 25 https://www.ncbi.nlm.nih.gov/pubmed/38531545
Ethnicity is not biology: retinal pigment score to evaluate biological variability from ophthalmic imaging using machine learning. Rajesh AE, Olvera-Barrios A, Warwick AN, Wu Y, Stuart KV, Biradar M, Ung CY, Khawaja AP, Luben R, Foster PJ, Lee CS, Tufail A, Lee AY, Egan C, EPIC Norfolk, UK Biobank Eye and Vision Consortium medRxiv : the preprint server for health sciences 37461664 medRxiv 2023 Jul 6 https://www.ncbi.nlm.nih.gov/pubmed/37461664
Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. Lee CS, Krakauer C, Su YR, Walker RL, Blazes M, McCurry SM, Bowen JD, McCormick WC, Lee AY, Boyko EJ, O'Hare AM, Larson EB, Crane PK American journal of ophthalmology 36513155 Am J Ophthalmol 2023 May https://www.ncbi.nlm.nih.gov/pubmed/36513155
Cross-instrument optical coherence tomography-angiography (OCTA)-based prediction of age-related macular degeneration (AMD) disease activity using artificial intelligence. Heinke A, Zhang H, Broniarek K, Michalska-Małecka K, Elsner W, Galang CMB, Deussen DN, Warter A, Kalaw F, Nagel I, Agnihotri A, Mehta NN, Klaas JE, Schmelter V, Kozak I, Baxter SL, Bartsch DU, Cheng L, An C, Nguyen T, Freeman WR Scientific reports 39511248 Sci Rep 2024 Nov 7 https://www.ncbi.nlm.nih.gov/pubmed/39511248
The march to harmonized imaging standards for retinal imaging. Gim N, Ferguson AN, Blazes M, Lee CS, Lee AY Progress in retinal and eye research 40360070 Prog Retin Eye Res 2025 Jul https://www.ncbi.nlm.nih.gov/pubmed/40360070
Machine learning derived retinal pigment score from ophthalmic imaging shows ethnicity is not biology. Rajesh AE, Olvera-Barrios A, Warwick AN, Wu Y, Stuart KV, Biradar MI, Ung CY, Khawaja AP, Luben R, Foster PJ, Cleland CR, Makupa WU, Denniston AK, Burton MJ, Bastawrous A, Keane PA, Chia MA, Turner AW, Lee CS, Tufail A, Lee AY, Egan C, UK Biobank Eye and Vision Consortium Nature communications 39746957 Nat Commun 2025 Jan 2 https://www.ncbi.nlm.nih.gov/pubmed/39746957
Associations between dementia and exposure to topical glaucoma medications. Davidson O, Lee ML, Kam JP, Brush M, Rajesh A, Blazes M, Arterburn DE, Duerr E, Gibbons LE, Crane PK, Lee CS, Eye ACT study group Journal of Alzheimer's disease : JAD 39834248 J Alzheimers Dis 2025 Feb https://www.ncbi.nlm.nih.gov/pubmed/39834248
Glaucoma Detection and Feature Identification via GPT-4V Fundus Image Analysis. Jalili J, Jiravarnsirikul A, Bowd C, Chuter B, Belghith A, Goldbaum MH, Baxter SL, Weinreb RN, Zangwill LM, Christopher M Ophthalmology science 39877464 Ophthalmol Sci 2025 Mar-Apr https://www.ncbi.nlm.nih.gov/pubmed/39877464
Differences in macular thickness associated with peripheral retinal vessel whitening in diabetic patients. Kalaw FGP, Sharma P, Walker E, Borooah S Scientific reports 39191790 Sci Rep 2024 Aug 27 https://www.ncbi.nlm.nih.gov/pubmed/39191790
Federated Learning in Glaucoma: A Comprehensive Review and Future Perspectives. Hallaj S, Chuter BG, Lieu AC, Singh P, Kalpathy-Cramer J, Xu BY, Christopher M, Zangwill LM, Weinreb RN, Baxter SL Ophthalmology. Glaucoma 39214457 Ophthalmol Glaucoma 2025 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/39214457
Ethical considerations for large language models in ophthalmology. Kalaw FGP, Baxter SL Current opinion in ophthalmology 39259616 Curr Opin Ophthalmol 2024 Nov 1 https://www.ncbi.nlm.nih.gov/pubmed/39259616
Estimating Uncertainty of Geographic Atrophy Segmentations with Bayesian Deep Learning. Spaide T, Rajesh AE, Gim N, Blazes M, Lee CS, Macivannan N, Lee G, Lewis W, Salehi A, de Sisternes L, Herrera G, Shen M, Gregori G, Rosenfeld PJ, Pramil V, Waheed N, Wu Y, Zhang Q, Lee AY Ophthalmology science 39380882 Ophthalmol Sci 2025 Jan-Feb https://www.ncbi.nlm.nih.gov/pubmed/39380882
Barriers to Extracting and Harmonizing Glaucoma Testing Data: Gaps, Shortcomings, and the Pursuit of FAIRness. Radgoudarzi N, Hallaj S, Boland MV, Stagg B, Wang SY, Xu B, Swaminathan SS, Brown EN, Chen A, Sun CQ, Amarasekera DC, Myers JS, Saifee M, Halfpenny W, Dirkes K, Zangwill L, Goetz KE, Hribar M, Baxter SL Ophthalmology science 39429240 Ophthalmol Sci 2024 Nov-Dec https://www.ncbi.nlm.nih.gov/pubmed/39429240
ARTIFICIAL INTELLIGENCE-ENHANCED OPTICAL COHERENCE TOMOGRAPHY ANALYSIS FOR DETECTING INTERNAL LIMITING MEMBRANE REMOVAL IN EPIRETINAL MEMBRANE SURGERY. Mehta NN, Le AD, Nagel ID, Agnihotri A, Heinke A, Cheng L, Bartsch DU, Tran M, Truong N, Cheolhong A, Freeman WR Retina (Philadelphia, Pa.) 40638841 Retina 2025 Dec 1 https://www.ncbi.nlm.nih.gov/pubmed/40638841
Ground Truth Reliability and Clinical Generalisability in Deep Learning for Reticular Pseudodrusen-Response. Kumar H, Bagdasarova Y, Guymer RH, Lee AY, Wu Z Clinical & experimental ophthalmology 41839708 Clin Exp Ophthalmol 2026 Mar 16 https://www.ncbi.nlm.nih.gov/pubmed/41839708

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