Bridge to Artificial Intelligence (Bridge2AI)
Bridge to Artificial Intelligence (Bridge2AI)
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Authors | Journal | PubMedID | Publication Date |
|---|---|---|---|---|
| Deep learning to predict rapid progression of Alzheimer's disease from pooled clinical trials: A retrospective study. | Ma, Xiaotian; Shyer, Madison; Harris, Kristofer; Wang, Dulin; Hsu, Yu-Chun; Farrell, Christine; Goodwin, Nathan; Anjum, Sahar; Bukhbinder, Avram S; Dean, Sarah; Khan, Tanveer; Hunter, David; Schulz, Paul E; Jiang, Xiaoqian; Kim, Yejin | PLOS digital health | 38598464 | 2024 Apr |
| A primer for quantum computing and its applications to healthcare and biomedical research. | Durant, Thomas J S; Knight, Elizabeth; Nelson, Brent; Dudgeon, Sarah; Lee, Seung J; Walliman, Dominic; Young, Hobart P; Ohno-Machado, Lucila; Schulz, Wade L | Journal of the American Medical Informatics Association : JAMIA | 38934288 | 2024 Aug 01 |
| Correlations Between Anxiety and/or Depression Diagnoses and Dysphagia Severity. | Doruk, Can; Mocchetti, Valentina; Rives, Hal; Christos, Paul; Rameau, Anaïs | The Laryngoscope | 37942834 | 2024 May |
| ARTIFICIAL INTELLIGENCE FOR OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY-BASED DISEASE ACTIVITY PREDICTION IN AGE-RELATED MACULAR DEGENERATION. | Heinke, Anna; Zhang, Haochen; Deussen, Daniel; Galang, Carlo Miguel B; Warter, Alexandra; Kalaw, Fritz Gerald P; Bartsch, Dirk-Uwe G; Cheng, Lingyun; An, Cheolhong; Nguyen, Truong; Freeman, William R | Retina (Philadelphia, Pa.) | 37988102 | 2024 Mar 01 |
| SPeC: A Soft Prompt-Based Calibration on Performance Variability of Large Language Model in Clinical Notes Summarization. | Chuang, Yu-Neng; Tang, Ruixiang; Jiang, Xiaoqian; Hu, Xia | Journal of biomedical informatics | 38325698 | 2024 Mar |
| Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews and meta-analyses. | Zavalis, Emmanuel A; Rameau, Anaïs; Saraswathula, Anirudh; Vist, Joachim; Schuit, Ewoud; Ioannidis, John P | BMJ open | 38195174 | 2024 Jan 09 |
| Design and Usability of an Open-Source, Low-Cost Flexible Laryngoscope for Resource-Limited Settings. | Srinivasan, Yashes; Shamritsky, David; Bhatta, Asmita; Chou, Ellaine; Pham, Trang; Sanghvi, Yashi; Woolf, Lily; Zhang, Michael; Odigie, Eseosa; Chidziva, Clemence; Muganda, Erasmus; Zimani, Priscilla; de Faria, Newton; Rameau, Anaïs | JAMA otolaryngology-- head & neck surgery | 38451500 | 2024 Apr 01 |
| Building a house without foundations? A 24-country qualitative interview study on artificial intelligence in intensive care medicine. | McLennan, Stuart; Fiske, Amelia; Celi, Leo Anthony | BMJ health & care informatics | 38642921 | 2024 Apr 19 |
| Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. | Clark, Timothy; Mohan, Jillian; Schaffer, Leah; Obernier, Kirsten; Al Manir, Sadnan; Churas, Christopher P; Dailamy, Amir; Doctor, Yesh; Forget, Antoine; Hansen, Jan Niklas; Hu, Mengzhou; Lenkiewicz, Joanna; Levinson, Maxwell Adam; Marquez, Charlotte; Nourreddine, Sami; Niestroy, Justin; Pratt, Dexter; Qian, Gege; Thaker, Swathi; Bélisle-Pipon, Jean-Christophe; Brandt, Cynthia; Chen, Jake; Ding, Ying; Fodeh, Samah; Krogan, Nevan; Lundberg, Emma; Mali, Prashant; Payne-Foster, Pamela; Ratcliffe, Sarah; Ravitsky, Vardit; Sali, Andrej; Schulz, Wade; Ideker, Trey | bioRxiv : the preprint server for biology | 38826258 | 2024 May 24 |
| Artificial Intelligence in Otolaryngology: Topics in Epistemology & Ethics. | Tai, Katie; Zhao, Robin; Rameau, Anaïs | Otolaryngologic clinics of North America | 38839555 | 2024 Oct |
| Robust genome and cell engineering via in vitro and in situ circularized RNAs. | Tong, Michael; Palmer, Nathan; Dailamy, Amir; Kumar, Aditya; Khaliq, Hammza; Han, Sangwoo; Finburgh, Emma; Wing, Madeleine; Hong, Camilla; Xiang, Yichen; Miyasaki, Katelyn; Portell, Andrew; Rainaldi, Joseph; Suhardjo, Amanda; Nourreddine, Sami; Chew, Wei Leong; Kwon, Ester J; Mali, Prashant | Nature biomedical engineering | 39187662 | 2024 Aug 26 |
| Ethical considerations for large language models in ophthalmology. | Kalaw, Fritz Gerald P; Baxter, Sally L | Current opinion in ophthalmology | 39259616 | 2024 Nov 01 |
| Interface-guided phenotyping of coding variants in the transcription factor RUNX1. | Ozturk, Kivilcim; Panwala, Rebecca; Sheen, Jeanna; Ford, Kyle; Jayne, Nathan; Portell, Andrew; Zhang, Dong-Er; Hutter, Stephan; Haferlach, Torsten; Ideker, Trey; Mali, Prashant; Carter, Hannah | Cell reports | 38968069 | 2024 Jul 23 |
| Virtual Reality for Pain Management During High-Resolution Manometry: A Randomized Clinical Trial. | Palte, Ilan; Stewart, Sarah; Rives, Hal; Curtis, James A; Enver, Necati; Tritter, Andrew; Andreadis, Katerina; Mocchetti, Valentina; Schnoll-Sussman, Felice; Soumekh, Amir; Zarnegar, Rasa; Katz, Philip; Rameau, Anaïs | The Laryngoscope | 37497865 | 2024 Mar |
| PipeVal: light-weight extensible tool for file validation. | Patel, Yash; Beshlikyan, Arpi; Jordan, Madison; Kim, Gina; Holmes, Aaron; Yamaguchi, Takafumi N; Boutros, Paul C | Bioinformatics (Oxford, England) | 38341658 | 2024 Feb 01 |
| NFTest: automated testing of Nextflow pipelines. | Patel, Yash; Zhu, Chenghao; Yamaguchi, Takafumi N; Bugh, Yuan Zhe; Tian, Mao; Holmes, Aaron; Fitz-Gibbon, Sorel T; Boutros, Paul C | Bioinformatics (Oxford, England) | 38341660 | 2024 Feb 01 |
| BRSET: A Brazilian Multilabel Ophthalmological Dataset of Retina Fundus Photos. | Nakayama, Luis Filipe; Restrepo, David; Matos, João; Ribeiro, Lucas Zago; Malerbi, Fernando Korn; Celi, Leo Anthony; Regatieri, Caio Saito | medRxiv : the preprint server for health sciences | 38343827 | 2024 Jan 23 |
| Mondrian Abstraction and Language Model Embeddings for Differential Pathway Analysis. | Al Abir, Fuad; Chen, Jake Y | bioRxiv : the preprint server for biology | 38659966 | 2024 Aug 19 |
| DF-DM: A foundational process model for multimodal data fusion in the artificial intelligence era. | Restrepo, David; Wu, Chenwei; Vásquez-Venegas, Constanza; Nakayama, Luis Filipe; Celi, Leo Anthony; López, Diego M | Research square | 38746100 | 2024 Apr 23 |
| Social Determinants of Health and Limitation of Life-Sustaining Therapy in Neurocritical Care: A CHoRUS Pilot Project. | Kwak, Gloria Hyunjung; Kamdar, Hera A; Douglas, Molly J; Hu, Hui; Ack, Sophie E; Lissak, India A; Williams, Andrew E; Yechoor, Nirupama; Rosenthal, Eric S | Neurocritical care | 38844599 | 2024 Jun 06 |
| Patient-Centered Equitable and Safe Artificial Intelligence in Otolaryngology-Head and Neck Surgery. | Tai, Katherine; Zhao, Robin; Rameau, Anaïs | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38943446 | 2024 Jun 29 |
| High Prevalence of Artifacts in Optical Coherence Tomography With Adequate Signal Strength. | Lin, Wei-Chun; Coyner, Aaron S; Amankwa, Charles E; Lucero, Abigail; Wollstein, Gadi; Schuman, Joel S; Ishikawa, Hiroshi | Translational vision science & technology | 39196579 | 2024 Aug 01 |
| Developing an image-based grading scale for peripheral drusen to investigate associations of peripheral drusen type with age-related macular degeneration. | Sharma, Paripoorna; Kalaw, Fritz Gerald P; Lin, Andrew; Walker, Evan H; Borooah, Shyamanga | Scientific reports | 39198593 | 2024 Aug 29 |
| Competing interests: digital health and indigenous data sovereignty. | Cordes, Ashley; Bak, Marieke; Lyndon, Mataroria; Hudson, Maui; Fiske, Amelia; Celi, Leo Anthony; McLennan, Stuart | NPJ digital medicine | 38965365 | 2024 Jul 04 |
| Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. | Low, Daniel M; Rao, Vishwanatha; Randolph, Gregory; Song, Phillip C; Ghosh, Satrajit S | medRxiv : the preprint server for health sciences | 33501466 | 2024 Mar 20 |
| Validation of a 3D-Printed Percutaneous Injection Laryngoplasty Simulator: A Randomized Controlled Trial. | Kostas, Julianna C; Lee, Andrew S; Arunkumar, Amit; Han, Catherine; Lee, Mark; Goel, Alexander N; Alrassi, James; Crosby, Tyler; Clark, Christine M; Amin, Milan; Abu-Ghanem, Sara; Kirke, Diana; Rameau, Anaïs | The Laryngoscope | 37466294 | 2024 Jan |
| Ultra-wide field and new wide field composite retinal image registration with AI-enabled pipeline and 3D distortion correction algorithm. | Kalaw, Fritz Gerald P; Cavichini, Melina; Zhang, Junkang; Wen, Bo; Lin, Andrew C; Heinke, Anna; Nguyen, Truong; An, Cheolhong; Bartsch, Dirk-Uwe G; Cheng, Lingyun; Freeman, William R | Eye (London, England) | 38114568 | 2024 Apr |
| Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms. | Steinberg, Philippa L; Liu, Lydia Y; Neiman-Golden, Anna; Patel, Yash; Boutros, Paul C | bioRxiv : the preprint server for biology | 38370678 | 2024 Feb 08 |
| Current Practices in Voice Data Collection and Limitations to Voice AI Research: A National Survey. | Evangelista, Emily; Kale, Rohan; McCutcheon, Desiree; Rameau, Anais; Gelbard, Alexander; Powell, Maria; Johns, Michael; Law, Anthony; Song, Phillip; Naunheim, Matthew; Watts, Stephanie; Bryson, Paul C; Crowson, Matthew G; Pinto, Jeremy; Bridge2AI-Voice; Bensoussan, Yael | The Laryngoscope | 38087983 | 2024 Mar |
| Peer review of GPT-4 technical report and systems card. | Gallifant, Jack; Fiske, Amelia; Levites Strekalova, Yulia A; Osorio-Valencia, Juan S; Parke, Rachael; Mwavu, Rogers; Martinez, Nicole; Gichoya, Judy Wawira; Ghassemi, Marzyeh; Demner-Fushman, Dina; McCoy, Liam G; Celi, Leo Anthony; Pierce, Robin | PLOS digital health | 38236824 | 2024 Jan |
| Cough Sounds in Screening and Diagnostics: A Scoping Review. | Hegde, Siddhi; Sreeram, Shreya; Alter, Isaac L; Shor, Chaya; Valdez, Tulio A; Meister, Kara D; Rameau, Anaïs | The Laryngoscope | 37672667 | 2024 Mar |
| Long-Term Surgical Outcomes of Glaucoma Drainage Implants in Eyes with Preoperative Intraocular Pressure Less than 19 mmHg. | Hallaj, Shahin; Wong, Jae-Chiang; Hock, Lauren E; Kolomeyer, Natasha Nayak; Shukla, Aakriti G; Pro, Michael J; Moster, Marlene R; Myers, Jonathan S; Razeghinejad, Reza; Lee, Daniel | Journal of ophthalmology | 38304290 | 2024 |
| Effect of manual OCTA segmentation correction to improve image quality and visibility of choroidal neovascularization in AMD. | Deussen, Daniel N; Heinke, Anna; Elsner, Wyatt; Galang, Carlo Miguel B; Kalaw, Fritz Gerald P; Warter, Alexandra; Bartsch, Dirk-Uwe; Cheng, Lingyun; Freeman, William R | Scientific reports | 38886462 | 2024 Jun 18 |
| De novo generation of multi-target compounds using deep generative chemistry. | Munson, Brenton P; Chen, Michael; Bogosian, Audrey; Kreisberg, Jason F; Licon, Katherine; Abagyan, Ruben; Kuenzi, Brent M; Ideker, Trey | Nature communications | 38710699 | 2024 May 06 |
| Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review. | Lacson, Roger; Yu, Yufei; Kuo, Tsung-Ting; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 38726710 | 2024 May 20 |
| Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. | Low, Daniel M; Rao, Vishwanatha; Randolph, Gregory; Song, Phillip C; Ghosh, Satrajit S | PLOS digital health | 38814939 | 2024 May |
| Elective Surgery Trends and Outcomes of Nonagenarians and Centenarians in Otolaryngology-Head and Neck Surgery: A NSQIP Study. | Srinivasan, Yashes; Briano, Juan; Czaja, Sara; Lachs, Mark S; Rosen, Anthony E; Stewart, Michael G; Rameau, Anaïs | The Laryngoscope | 38587164 | 2024 Sep |
| Voice Disorders and Hearing Loss May Be Additive Risk Factors for Depression in a National Cohort. | Rameau, Anaïs; Tucker, Lauren H; Denham, Michael W; Kang, Yung Jee; Choi, Nayeon; Lachs, Mark; Rosen, Tony Ehren; Stewart, Michael; Czaja, Sara; Golub, Justin S | The Laryngoscope | 38804637 | 2024 Sep |
| Just how transformative will AI/ML be for immuno-oncology? | Bottomly, Daniel; McWeeney, Shannon | Journal for immunotherapy of cancer | 38531545 | 2024 Mar 25 |
| Artificial intelligence in healthcare: Opportunities come with landmines. | Iqbal, Usman; Hsu, Yi-Hsin Elsa; Celi, Leo Anthony; Li, Yu-Chuan Jack | BMJ health & care informatics | 38839426 | 2024 Jun 05 |
| A Clinician's Guide to Sharing Data for AI in Ophthalmology. | Gim, Nayoon; Wu, Yue; Blazes, Marian; Lee, Cecilia S; Wang, Ruikang K; Lee, Aaron Y | Investigative ophthalmology & visual science | 38864811 | 2024 Jun 03 |
| Multi-modal contrastive learning of subcellular organization using DICE. | Nasser, Rami; Schaffer, Leah V; Ideker, Trey; Sharan, Roded | Bioinformatics (Oxford, England) | 39230695 | 2024 Sep 01 |
| Deriving Automated Device Metadata From Intracranial Pressure Waveforms: A Transforming Research and Clinical Knowledge in Traumatic Brain Injury ICU Physiology Cohort Analysis. | Ack, Sophie E; Dolmans, Rianne G F; Foreman, Brandon; Manley, Geoffrey T; Rosenthal, Eric S; Zabihi, Morteza | Critical care explorations | 39016273 | 2024 Jul 01 |
| Concurrent Validity of a Low-Cost Manometer for Objective Assessments of Respiratory Muscle Strength. | Curtis, James A; Mocchetti, Valentina; Rameau, Anaïs | The Laryngoscope | 37837395 | 2024 Apr |
| Minimizing bias when using artificial intelligence in critical care medicine. | Ranard, Benjamin L; Park, Soojin; Jia, Yugang; Zhang, Yiye; Alwan, Fatima; Celi, Leo Anthony; Lusczek, Elizabeth R | Journal of critical care | 38552451 | 2024 Aug |
| Does diversity beget diversity? A scientometric analysis of over 150,000 studies and 49,000 authors published in high-impact medical journals between 2007 and 2022. | Charpignon, Marie-Laure; Matos, João; Nakayama, Luis; Gallifant, Jack; Alfonso, Pia Gabrielle I; Cobanaj, Marisa; Fiske, Amelia; Gates, Alexander J; Ho, Frances Dominique V; Jain, Urvish; Kashkooli, Mohammad; McCoy, Liam G; Shaffer, Jonathan; Link Woite, Naira; Celi, Leo Anthony | medRxiv : the preprint server for health sciences | 38562711 | 2024 Mar 22 |
| Why federated learning will do little to overcome the deeply embedded biases in clinical medicine. | Sauer, Christopher Martin; Pucher, Gernot; Celi, Leo Anthony | Intensive care medicine | 38829532 | 2024 Aug |
| Female Surgical Ergonomics in Otolaryngology: A National Survey Study. | Morse, Elliot; Tai, Katherine; Harpel, Lexa; Born, Hayley; Krishna, Priya; Rameau, Anaïs | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 37890071 | 2024 Mar |
| In Response to Concurrent Validity of the IOPI and Tongueometer Orofacial Strength Measurement Devices. | Curtis, James A; Mocchetti, Valentina; Rameau, Anaïs | The Laryngoscope | 37905777 | 2024 Jan |
| Evaluation of large language models for discovery of gene set function. | Hu, Mengzhou; Alkhairy, Sahar; Lee, Ingoo; Pillich, Rudolf T; Fong, Dylan; Smith, Kevin; Bachelder, Robin; Ideker, Trey; Pratt, Dexter | ArXiv | 37731657 | 2024 Apr 01 |
| Developing a Continuous Severity Scale for Macular Telangiectasia Type 2 Using Deep Learning and Implications for Disease Grading. | Wu, Yue; Egan, Catherine; Olvera-Barrios, Abraham; Scheppke, Lea; Peto, Tunde; Charbel Issa, Peter; Heeren, Tjebo F C; Leung, Irene; Rajesh, Anand E; Tufail, Adnan; Lee, Cecilia S; Chew, Emily Y; Friedlander, Martin; Lee, Aaron Y | Ophthalmology | 37739233 | 2024 Feb |
| Using Generative Artificial Intelligence in the Production and Dissemination of Innovation in Otolaryngology-Ethical Considerations. | Khoury, Carolyn Jane; Enver, Necati; Paderno, Alberto; Ratti, Emanuele; Rameau, Anaïs | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38044483 | 2024 Jun |
| Testing the 'Faith Moves Mountains model' to increase Alzheimer's disease awareness, detection, and diagnosis among rural, racially, and ethnically diverse older adults. | Wiese, Lisa Kirk; Williams, Ishan C; Holt, Janet K; Williams, Christine L; Lingler, Jennifer; Galvin, James E; Schoenberg, Nancy E | Aging & mental health | 38127408 | 2024 Jun |
| Tools for assembling the cell: Towards the era of cell structural bioinformatics. | Hu, Mengzhou; Zhang, Xikun; Latham, Andrew; Šali, Andrej; Ideker, Trey; Lundberg, Emma | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 38160316 | 2024 |
| Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes. | Cesnik, Anthony; Schaffer, Leah V; Gaur, Ishan; Jain, Mayank; Ideker, Trey; Lundberg, Emma | Annual review of biomedical data science | 38748859 | 2024 Aug |
| A multimodal framework for extraction and fusion of satellite images and public health data. | Moukheiber, Dana; Restrepo, David; Cajas, Sebastián Andrés; Montoya, María Patricia Arbeláez; Celi, Leo Anthony; Kuo, Kuan-Ting; López, Diego M; Moukheiber, Lama; Moukheiber, Mira; Moukheiber, Sulaiman; Osorio-Valencia, Juan Sebastian; Purkayastha, Saptarshi; Paddo, Atika Rahman; Wu, Chenwei; Kuo, Po-Chih | Scientific data | 38879585 | 2024 Jun 15 |
| Differences in macular thickness associated with peripheral retinal vessel whitening in diabetic patients. | Kalaw, Fritz Gerald P; Sharma, Paripoorna; Walker, Evan; Borooah, Shyamanga | Scientific reports | 39191790 | 2024 Aug 27 |
| Best practices to evaluate the impact of biomedical research software-metric collection beyond citations. | Afiaz, Awan; Ivanov, Andrey A; Chamberlin, John; Hanauer, David; Savonen, Candace L; Goldman, Mary J; Morgan, Martin; Reich, Michael; Getka, Alexander; Holmes, Aaron; Pati, Sarthak; Knight, Dan; Boutros, Paul C; Bakas, Spyridon; Caporaso, J Gregory; Del Fiol, Guilherme; Hochheiser, Harry; Haas, Brian; Schloss, Patrick D; Eddy, James A; Albrecht, Jake; Fedorov, Andrey; Waldron, Levi; Hoffman, Ava M; Bradshaw, Richard L; Leek, Jeffrey T; Wright, Carrie | Bioinformatics (Oxford, England) | 39067017 | 2024 Aug 02 |
| Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. | Low, Daniel M; Rao, Vishwanatha; Randolph, Gregory; Song, Phillip C; Ghosh, Satrajit S | medRxiv : the preprint server for health sciences | 33501466 | 2023 Oct 23 |
| Early Biomarker Signatures in Surgical Sepsis. | Madushani, R W M A; Patel, Vishal; Loftus, Tyler; Ren, Yuanfang; Li, Han Jacob; Velez, Laura; Wu, Quran; Adhikari, Lasith; Efron, Philip; Segal, Mark; Ozrazgat-Baslanti, Tezcan; Rashidi, Parisa; Bihorac, Azra; Sepsis and Critical Illness Research Center Investigators | The Journal of surgical research | 35569215 | 2022 Sep |
| Training Deep Learning Models to Work on Multiple Devices by Cross-Domain Learning with No Additional Annotations. | Wu, Yue; Olvera-Barrios, Abraham; Yanagihara, Ryan; Kung, Timothy-Paul H; Lu, Randy; Leung, Irene; Mishra, Amit V; Nussinovitch, Hanan; Grimaldi, Gabriela; Blazes, Marian; Lee, Cecilia S; Egan, Catherine; Tufail, Adnan; Lee, Aaron Y | Ophthalmology | 36154868 | 2022 Sep 22 |
| Quorum-based model learning on a blockchain hierarchical clinical research network using smart contracts. | Kuo, Tsung-Ting; Pham, Anh | International journal of medical informatics | 36402113 | 2023 Jan |
| Continuous ECG monitoring should be the heart of bedside AI-based predictive analytics monitoring for early detection of clinical deterioration. | Monfredi, Oliver J; Moore, Christopher C; Sullivan, Brynne A; Keim-Malpass, Jessica; Fairchild, Karen D; Loftus, Tyler J; Bihorac, Azra; Krahn, Katherine N; Dubrawski, Artur; Lake, Douglas E; Moorman, J Randall; Clermont, Gilles | Journal of electrocardiology | 36434848 | 2023 |
| Multi-dimensional patient acuity estimation with longitudinal EHR tokenization and flexible transformer networks. | Shickel, Benjamin; Silva, Brandon; Ozrazgat-Baslanti, Tezcan; Ren, Yuanfang; Khezeli, Kia; Guan, Ziyuan; Tighe, Patrick J; Bihorac, Azra; Rashidi, Parisa | Frontiers in digital health | 36440460 | 2022 |
| Diabetic Retinopathy and Dementia Association, Beyond Diabetes Severity. | Lee, Cecilia S; Krakauer, Chloe; Su, Yu-Ru; Walker, Rod; Blazes, Marian; McCurry, Susan M; Bowen, James D; McCormick, Wayne C; Lee, Aaron Y; Boyko, Edward; O'Hare, Ann; Larson, Eric B; Crane, Paul K | American journal of ophthalmology | 36513155 | 2022 Dec 10 |
| RNA editing: Expanding the potential of RNA therapeutics. | Booth, Brian J; Nourreddine, Sami; Katrekar, Dhruva; Savva, Yiannis; Bose, Debojit; Long, Thomas J; Huss, David J; Mali, Prashant | Molecular therapy : the journal of the American Society of Gene Therapy | 36620962 | 2023 Jan 07 |
| ADGR: Admixture-Informed Differential Gene Regulation. | Lee, In-Hee; Kong, Sek Won | Genes | 36672888 | 2023 Jan 05 |
| Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews. | Zavalis, Emmanuel A; Rameau, Anaïs; Saraswathula, Anirudh; Vist, Joachim; Schuit, Ewoud; Ioannidis, John P A | medRxiv : the preprint server for health sciences | 36778340 | 2023 Feb 01 |
| Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. | Kuo, Tsung-Ting; Pham, Anh; Edelson, Maxim E; Kim, Jihoon; Chan, Jason; Gupta, Yash; Ohno-Machado, Lucila; R2D2 Consortium | Journal of the American Medical Informatics Association : JAMIA | 36916740 | 2023 May 19 |
| Human-Centered Design to Address Biases in Artificial Intelligence. | Chen, You; Clayton, Ellen Wright; Novak, Laurie Lovett; Anders, Shilo; Malin, Bradley | Journal of medical Internet research | 36961506 | 2023 Mar 24 |
| Female Surgical Ergonomics in Otolaryngology: A Qualitative Study. | Morse, Elliot; Harpel, Lexa; Born, Hayley; Rameau, Anaïs | The Laryngoscope | 37096670 | 2023 Apr 25 |
| Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation. | Ford, Kyle; Munson, Brenton P; Fong, Samson H; Panwala, Rebecca; Chu, Wai Keung; Rainaldi, Joseph; Plongthongkum, Nongluk; Arunachalam, Vinayagam; Kostrowicki, Jarek; Meluzzi, Dario; Kreisberg, Jason F; Jensen-Pergakes, Kristen; VanArsdale, Todd; Paul, Th | Scientific reports | 37169829 | 2023 May 11 |
| Using Natural Language Processing to Predict Fatal Drug Overdose From Autopsy Narrative Text: Algorithm Development and Validation Study. | Tang, Leigh Anne; Korona-Bailey, Jessica; Zaras, Dimitrios; Roberts, Allison; Mukhopadhyay, Sutapa; Espy, Stephen; Walsh, Colin G | JMIR public health and surveillance | 37204824 | 2023 May 19 |
| A multi-scale map of protein assemblies in the DNA damage response. | Kratz, Anton; Kim, Minkyu; Kelly, Marcus R; Zheng, Fan; Koczor, Christopher A; Li, Jianfeng; Ono, Keiichiro; Qin, Yue; Churas, Christopher; Chen, Jing; Pillich, Rudolf T; Park, Jisoo; Modak, Maya; Collier, Rachel; Licon, Kate; Pratt, Dexter; Sobol, Robert | Cell systems | 37220749 | 2023 Jun 21 |
| Race, Ethnicity, Insurance and Population Density Associations with Pediatric Strabismus and Strabismic Amblyopia in the IRIS® Registry. | Rajesh, Anand E; Davidson, Oliver; Lacy, Megan; Chandramohan, Arthika; Lee, Aaron Y; Lee, Cecilia S; Tarczy-Hornoch, Kristina; IRIS® Registry Analytic Center Consortium | Ophthalmology | 37331481 | 2023 Jun 16 |
| Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? | Afiaz, Awan; Ivanov, Andrey; Chamberlin, John; Hanauer, David; Savonen, Candace; Goldman, Mary J; Morgan, Martin; Reich, Michael; Getka, Alexander; Holmes, Aaron; Pati, Sarthak; Knight, Dan; Boutros, Paul C; Bakas, Spyridon; Caporaso, J Gregory; Fiol, Guilherme Del; Hochheiser, Harry; Haas, Brian; Schloss, Patrick D; Eddy, James A; Albrecht, Jake; Fedorov, Andrey; Waldron, Levi; Hoffman, Ava M; Bradshaw, Richard L; Leek, Jeffrey T; Wright, Carrie | ArXiv | 37332562 | 2023 Jun 05 |
| Optimized Risk Score to Predict Mortality in Patients With Cardiogenic Shock in the Cardiac Intensive Care Unit. | Yamga, Eric; Mantena, Sreekar; Rosen, Darin; Bucholz, Emily M; Yeh, Robert W; Celi, Leo A; Ustun, Berk; Butala, Neel M | Journal of the American Heart Association | 37345819 | 2023 Jul 04 |
| Practice-Pattern Variation in Sedation of Neurotrauma Patients in the Intensive Care Unit: An International Survey. | Dolmans, Rianne G F; Nahed, Brian V; Robertson, Faith C; Peul, Wilco C; Rosenthal, Eric S; Broekman, Marike L D | Journal of intensive care medicine | 37415510 | 2023 Dec |
| Ethnicity is not biology: retinal pigment score to evaluate biological variability from ophthalmic imaging using machine learning. | Rajesh, Anand E; Olvera-Barrios, Abraham; Warwick, Alasdair N; Wu, Yue; Stuart, Kelsey V; Biradar, Mahantesh; Ung, Chuin Ying; Khawaja, Anthony P; Luben, Robert; Foster, Paul J; Lee, Cecilia S; Tufail, Adnan; Lee, Aaron Y; Egan, Catherine; EPIC Norfolk, U | medRxiv : the preprint server for health sciences | 37461664 | 2023 Jul 06 |
| Validation of a 3D-Printed Percutaneous Injection Laryngoplasty Simulator: A Randomized Controlled Trial. | Kostas, Julianna C; Lee, Andrew S; Arunkumar, Amit; Han, Catherine; Lee, Mark; Goel, Alexander N; Alrassi, James; Crosby, Tyler; Clark, Christine M; Amin, Milan; Abu-Ghanem, Sara; Kirke, Diana; Rameau, Anaïs | The Laryngoscope | 37466294 | 2024 Jan |
| Evaluating Access to Laser Eye Surgery by Driving Times Using Medicare Data and Geographical Mapping. | Shaffer, Jamie; Rajesh, Anand; Stewart, Michael W; Lee, Aaron Y; Miller, Darby D; Lee, Cecilia S; Francis, Courtney E | JAMA ophthalmology | 37471084 | 2023 Aug 01 |
| Virtual Reality for Pain Management During High-Resolution Manometry: A Randomized Clinical Trial. | Palte, Ilan; Stewart, Sarah; Rives, Hal; Curtis, James A; Enver, Necati; Tritter, Andrew; Andreadis, Katerina; Mocchetti, Valentina; Schnoll-Sussman, Felice; Soumekh, Amir; Zarnegar, Rasa; Katz, Philip; Rameau, Anaïs | The Laryngoscope | 37497865 | 2023 Jul 27 |
| Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial Networks. | Li, Bin; Shi, Xinghua; Gao, Hongchang; Jiang, Xiaoqian; Zhang, Kai; Harmanci, Arif O; Malin, Bradley | bioRxiv : the preprint server for biology | 37609241 | 2023 Aug 26 |
| Microperimetry Findings in Pentosan Polysulfate Maculopathy. | Most, Jesse; Kalaw, Fritz Gerald P; Walker, Evan; Arias, Juan D; Charng, Jason; Baxter, Sally L; Nudleman, Eric; Ferreyra, Henry; Freeman, William R; Chen, Fred K; Borooah, Shyamanga | Ophthalmology. Retina | 37619623 | 2023 Nov |
| Artificial Intelligence Governance and Otolaryngology-Head and Neck Surgery. | Nwosu, Obinna I; Crowson, Matthew G; Rameau, Anaïs | The Laryngoscope | 37658749 | 2023 Nov |
| Cough Sounds in Screening and Diagnostics: A Scoping Review. | Hegde, Siddhi; Sreeram, Shreya; Alter, Isaac L; Shor, Chaya; Valdez, Tulio A; Meister, Kara D; Rameau, Anaïs | The Laryngoscope | 37672667 | 2023 Sep 06 |
| Outcomes of Gender-Affirming Voice and Communication Modification Training for Non-binary Individuals: A Case Series. | Chadwick, Keith A; Liao, David; Alter, Isaac L; Coleman, Rachel; Andreadis, Katerina; Riekki, Rebecca; Waldman, Jack; Rives, Hal; Pitti, Mary; Rameau, Anaïs | Journal of voice : official journal of the Voice Foundation | 37673753 | 2023 Sep 04 |
| Common Data Elements for Disorders of Consciousness: Recommendations from the Working Group on Physiology and Big Data. | Beqiri, Erta; Badjatia, Neeraj; Ercole, Ari; Foreman, Brandon; Hu, Peter; Hu, Xiao; LaRovere, Kerri; Meyfroidt, Geert; Moberg, Dick; Robba, Chiara; Rosenthal, Eric S; Smielewski, Peter; Wainwright, Mark S; Park, Soojin; Curing Coma Campaign and its Contri | Neurocritical care | 37704934 | 2023 Dec |
| Investigating the Influence of Artificial Intelligence on Adolescent Health: An Urgent Call to Action. | Brisson, Julien; Bélisle-Pipon, Jean-Christophe; Ravitsky, Vardit | The Journal of adolescent health : official publication of the Society for Adolescent Medicine | 37716717 | 2023 Oct |
| Artificial Intelligence and Diabetic Retinopathy: AI Framework, Prospective Studies, Head-to-head Validation, and Cost-effectiveness. | Rajesh, Anand E; Davidson, Oliver Q; Lee, Cecilia S; Lee, Aaron Y | Diabetes care | 37729502 | 2023 Oct 01 |
| Trends and practices following the 2016 hydroxychloroquine screening guidelines. | Kalaw, Fritz Gerald P; Arnett, Justin; Baxter, Sally L; Walker, Evan; Pedersen, Brian; Borooah, Shyamanga | Scientific reports | 37730825 | 2023 Sep 20 |
| Evaluation of large language models for discovery of gene set function. | Hu, Mengzhou; Alkhairy, Sahar; Lee, Ingoo; Pillich, Rudolf T; Bachelder, Robin; Ideker, Trey; Pratt, Dexter | ArXiv | 37731657 | 2023 Sep 07 |
| Developing a Continuous Severity Scale for Macular Telangiectasia Type 2 Using Deep Learning and Implications for Disease Grading. | Wu, Yue; Egan, Catherine; Olvera-Barrios, Abraham; Scheppke, Lea; Peto, Tunde; Charbel Issa, Peter; Heeren, Tjebo F C; Leung, Irene; Rajesh, Anand E; Tufail, Adnan; Lee, Cecilia S; Chew, Emily Y; Friedlander, Martin; Lee, Aaron Y | Ophthalmology | 37739233 | 2023 Sep 20 |
| Generative AI, Specific Moral Values: A Closer Look at ChatGPT's New Ethical Implications for Medical AI. | Victor, Gavin; Bélisle-Pipon, Jean-Christophe; Ravitsky, Vardit | The American journal of bioethics : AJOB | 37812098 | 2023 Oct |
| A comparative atlas of single-cell chromatin accessibility in the human brain. | Li, Yang Eric; Preissl, Sebastian; Miller, Michael; Johnson, Nicholas D; Wang, Zihan; Jiao, Henry; Zhu, Chenxu; Wang, Zhaoning; Xie, Yang; Poirion, Olivier; Kern, Colin; Pinto-Duarte, Antonio; Tian, Wei; Siletti, Kimberly; Emerson, Nora; Osteen, Julia; Lucero, Jacinta; Lin, Lin; Yang, Qian; Zhu, Quan; Zemke, Nathan; Espinoza, Sarah; Yanny, Anna Marie; Nyhus, Julie; Dee, Nick; Casper, Tamara; Shapovalova, Nadiya; Hirschstein, Daniel; Hodge, Rebecca D; Linnarsson, Sten; Bakken, Trygve; Levi, Boaz; Keene, C Dirk; Shang, Jingbo; Lein, Ed; Wang, Allen; Behrens, M Margarita; Ecker, Joseph R; Ren, Bing | Science (New York, N.Y.) | 37824643 | 2023 Oct 13 |
| Concurrent Validity of a Low-Cost Manometer for Objective Assessments of Respiratory Muscle Strength. | Curtis, James A; Mocchetti, Valentina; Rameau, Anaïs | The Laryngoscope | 37837395 | 2024 Apr |
| Forecasting algorithms in the ICU. | Rooney, Sydney R; Clermont, Gilles | Journal of electrocardiology | 37883866 | 2023 |
| Female Surgical Ergonomics in Otolaryngology: A National Survey Study. | Morse, Elliot; Tai, Katherine; Harpel, Lexa; Born, Hayley; Krishna, Priya; Rameau, Anaïs | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 37890071 | 2023 Oct 27 |
| In Response to Concurrent Validity of the IOPI and Tongueometer Orofacial Strength Measurement Devices. | Curtis, James A; Mocchetti, Valentina; Rameau, Anaïs | The Laryngoscope | 37905777 | 2024 Jan |
| Correlations Between Anxiety and/or Depression Diagnoses and Dysphagia Severity. | Doruk, Can; Mocchetti, Valentina; Rives, Hal; Christos, Paul; Rameau, Anaïs | The Laryngoscope | 37942834 | 2023 Nov 09 |
| Predicting multiple sclerosis severity with multimodal deep neural networks. | Zhang, Kai; Lincoln, John A; Jiang, Xiaoqian; Bernstam, Elmer V; Shams, Shayan | BMC medical informatics and decision making | 37946182 | 2023 Nov 09 |
| POSTCARDS from a SIESTA: Crossing the Translational and Generalizability Gap for Predictive Models of Acute Respiratory Distress Syndrome-Related Mortality. | Wong, An-Kwok Ian; Kamaleswaran, Rishikesan | Critical care medicine | 37971334 | 2023 Dec 01 |
| ClotCatcher: a novel natural language model to accurately adjudicate venous thromboembolism from radiology reports. | Wang, Jeffrey; de Vale, Joao Souza; Gupta, Saransh; Upadhyaya, Pulakesh; Lisboa, Felipe A; Schobel, Seth A; Elster, Eric A; Dente, Christopher J; Buchman, Timothy G; Kamaleswaran, Rishikesan | BMC medical informatics and decision making | 37974186 | 2023 Nov 16 |
| Artificial intelligence for OCTA-based disease activity prediction in age-related macular degeneration. | Heinke, Anna; Zhang, Haochen; Deussen, Daniel; Galang, Carlo Miguel B; Warter, Alexandra; Paguiligan Kalaw, Fritz Gerald; Bartsch, Dirk-Uwe G; Cheng, Lingyun; An, Cheolhong; Nguyen, Truong; Freeman, William R | Retina (Philadelphia, Pa.) | 37988102 | 2023 Oct 31 |
| Large language models and their impact in ophthalmology. | Betzler, Bjorn Kaijun; Chen, Haichao; Cheng, Ching-Yu; Lee, Cecilia S; Ning, Guochen; Song, Su Jeong; Lee, Aaron Y; Kawasaki, Ryo; van Wijngaarden, Peter; Grzybowski, Andrzej; He, Mingguang; Li, Dawei; Ran Ran, An; Ting, Daniel Shu Wei; Teo, Kelvin; Ruamv | The Lancet. Digital health | 38000875 | 2023 Dec |
| Evaluation of Publications from the American Academy of Ophthalmology: A 5-Year Analysis of Ophthalmology Literature. | Kalaw, Fritz Gerald P; Tavakoli, Kiana; Baxter, Sally L | Ophthalmology science | 38025157 | 2023 Dec |
| A Novel Low-Cost, Open-Source, Three-Dimensionally Printed Thyroplasty Simulator. | Kostas, Julianna C; Lee, Mark; Rameau, Anaïs | Journal of voice : official journal of the Voice Foundation | 38036381 | 2023 Nov 29 |
| Using Generative Artificial Intelligence in the Production and Dissemination of Innovation in Otolaryngology-Ethical Considerations. | Khoury, Carolyn Jane; Enver, Necati; Paderno, Alberto; Ratti, Emanuele; Rameau, Anaïs | Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery | 38044483 | 2023 Dec 03 |
| BOSC 2023, the 24th annual Bioinformatics Open Source Conference. | Harris, Nomi L; Fields, Christopher J; Hokamp, Karsten; Just, Jérémy; Khetani, Radhika; Maia, Jessica; Ménager, Hervé; Munoz-Torres, Monica C; Unni, Deepak; Williams, Jason | F1000Research | 38076297 | 2023 |
| Current Practices in Voice Data Collection and Limitations to Voice AI Research: A National Survey. | Evangelista, Emily; Kale, Rohan; McCutcheon, Desiree; Rameau, Anais; Gelbard, Alexander; Powell, Maria; Johns, Michael; Law, Anthony; Song, Phillip; Naunheim, Matthew; Watts, Stephanie; Bryson, Paul C; Crowson, Matthew G; Pinto, Jeremy; Bridge2AI-Voice; B | The Laryngoscope | 38087983 | 2023 Dec 13 |
| Ultra-wide field and new wide field composite retinal image registration with AI-enabled pipeline and 3D distortion correction algorithm. | Kalaw, Fritz Gerald P; Cavichini, Melina; Zhang, Junkang; Wen, Bo; Lin, Andrew C; Heinke, Anna; Nguyen, Truong; An, Cheolhong; Bartsch, Dirk-Uwe G; Cheng, Lingyun; Freeman, William R | Eye (London, England) | 38114568 | 2023 Dec 19 |
| Availability of evidence and comparative effectiveness for surgical versus drug interventions: an overview of systematic reviews and meta-analyses. | Zavalis, Emmanuel A; Rameau, Anaïs; Saraswathula, Anirudh; Vist, Joachim; Schuit, Ewoud; Ioannidis, John P | BMJ open | 38195174 | 2024 Jan 09 |
| Split Learning for Distributed Collaborative Training of Deep Learning Models in Health Informatics. | Li, Zhuohang; Yan, Chao; Zhang, Xinmeng; Gharibi, Gharib; Yin, Zhijun; Jiang, Xiaoqian; Malin, Bradley A | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222326 | 2023 |
| Large Language Models for Healthcare Data Augmentation: An Example on Patient-Trial Matching. | Yuan, Jiayi; Tang, Ruixiang; Jiang, Xiaoqian; Hu, Xia | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222339 | 2023 |
| Sensitive Data Detection with High-Throughput Machine Learning Models in Electrical Health Records. | Zhang, Kai; Jiang, Xiaoqian | AMIA ... Annual Symposium proceedings. AMIA Symposium | 38222389 | 2023 |
| Peer review of GPT-4 technical report and systems card. | Gallifant, Jack; Fiske, Amelia; Levites Strekalova, Yulia A; Osorio-Valencia, Juan S; Parke, Rachael; Mwavu, Rogers; Martinez, Nicole; Gichoya, Judy Wawira; Ghassemi, Marzyeh; Demner-Fushman, Dina; McCoy, Liam G; Celi, Leo Anthony; Pierce, Robin | PLOS digital health | 38236824 | 2024 Jan |
| Long-Term Surgical Outcomes of Glaucoma Drainage Implants in Eyes with Preoperative Intraocular Pressure Less than 19 mmHg. | Hallaj, Shahin; Wong, Jae-Chiang; Hock, Lauren E; Kolomeyer, Natasha Nayak; Shukla, Aakriti G; Pro, Michael J; Moster, Marlene R; Myers, Jonathan S; Razeghinejad, Reza; Lee, Daniel | Journal of ophthalmology | 38304290 | 2024 |
| PipeVal: light-weight extensible tool for file validation. | Patel, Yash; Beshlikyan, Arpi; Jordan, Madison; Kim, Gina; Holmes, Aaron; Yamaguchi, Takafumi N; Boutros, Paul C | Bioinformatics (Oxford, England) | 38341658 | 2024 Feb 01 |
| NFTest: automated testing of Nextflow pipelines. | Patel, Yash; Zhu, Chenghao; Yamaguchi, Takafumi N; Bugh, Yuan Zhe; Tian, Mao; Holmes, Aaron; Fitz-Gibbon, Sorel T; Boutros, Paul C | Bioinformatics (Oxford, England) | 38341660 | 2024 Feb 01 |
| BRSET: A Brazilian Multilabel Ophthalmological Dataset of Retina Fundus Photos. | Nakayama, Luis Filipe; Restrepo, David; Matos, João; Ribeiro, Lucas Zago; Malerbi, Fernando Korn; Celi, Leo Anthony; Regatieri, Caio Saito | medRxiv : the preprint server for health sciences | 38343827 | 2024 Jan 23 |
| Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms. | Steinberg, Philippa L; Liu, Lydia Y; Neiman-Golden, Anna; Patel, Yash; Boutros, Paul C | bioRxiv : the preprint server for biology | 38370678 | 2024 Feb 08 |
| Just how transformative will AI/ML be for immuno-oncology? | Bottomly, Daniel; McWeeney, Shannon | Journal for immunotherapy of cancer | 38531545 | 2024 Mar 25 |
| Ensuring Trust in Genomics Research. | Ayday, Erman; Vaidya, Jaideep; Jiang, Xiaoqian; Telenti, Amalio | ... IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications : (TPS-ISA ...). IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications | 38562180 | 2023 Nov |
| Does diversity beget diversity? A scientometric analysis of over 150,000 studies and 49,000 authors published in high-impact medical journals between 2007 and 2022. | Charpignon, Marie-Laure; Matos, João; Nakayama, Luis; Gallifant, Jack; Alfonso, Pia Gabrielle I; Cobanaj, Marisa; Fiske, Amelia; Gates, Alexander J; Ho, Frances Dominique V; Jain, Urvish; Kashkooli, Mohammad; McCoy, Liam G; Shaffer, Jonathan; Link Woite, | medRxiv : the preprint server for health sciences | 38562711 | 2024 Mar 22 |
| Dynamic Delirium Prediction in the Intensive Care Unit using Machine Learning on Electronic Health Records. | Contreras, Miguel; Silva, Brandon; Shickel, Benjamin; Bandyopadhyay, Sabyasachi; Guan, Ziyuan; Ren, Yuanfang; Ozrazgat-Baslanti, Tezcan; Khezeli, Kia; Bihorac, Azra; Rashidi, Parisa | ... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics | 38585187 | 2023 Oct |
