Knockout Mouse Phenotyping Program (KOMP2)
Knockout Mouse Phenotyping Program (KOMP2)
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date |
|---|---|---|---|---|---|
| Identification of genes required for eye development by high-throughput screening of mouse knockouts. | Moore BA, Leonard BC, Sebbag L, Edwards SG, Cooper A, Imai DM, Straiton E, Santos L, Reilly C, Griffey SM, Bower L, Clary D, Mason J, Roux MJ, Meziane H, Herault Y, International Mouse Phenotyping Consortium, McKerlie C, Flenniken AM, Nutter LMJ, Berberovic Z, Owen C, Newbigging S, Adissu H, Eskandarian M, Hsu CW, Kalaga S, Udensi U, Asomugha C, Bohat R, Gallegos JJ, Seavitt JR, Heaney JD, Beaudet AL, Dickinson ME, Justice MJ, Philip V, Kumar V, Svenson KL, Braun RE, Wells S, Cater H, Stewart M, Clementson-Mobbs S, Joynson R, Gao X, Suzuki T, Wakana S, Smedley D, Seong JK, Tocchini-Valentini G, Moore M, Fletcher C, Karp N, Ramirez-Solis R, White JK, de Angelis MH, Wurst W, Thomasy SM, Flicek P, Parkinson H, Brown SDM, Meehan TF, Nishina PM, Murray SA, Krebs MP, Mallon AM, Lloyd KCK, Murphy CJ, Moshiri A | Communications biology | 30588515 | Commun Biol | 2018 |
| Progress towards completing the mutant mouse null resource. | Peterson KA, Murray SA | Mammalian genome : official journal of the International Mammalian Genome Society | 34698892 | Mamm Genome | 2022 Mar |
| Genetic analysis of Pycr1 and Pycr2 in mice. | Stum MG, Tadenev ALD, Seburn KL, Miers KE, Poon PP, McMaster CR, Robinson C, Kane C, Silva KA, Cliften PF, Sundberg JP, Reinholdt LG, John SWM, Burgess RW | Genetics | 33734376 | Genetics | 2021 May 17 |
| Identifying genetic determinants of inflammatory pain in mice using a large-scale gene-targeted screen. | Wotton JM, Peterson E, Flenniken AM, Bains RS, Veeraragavan S, Bower LR, Bubier JA, Parisien M, Bezginov A, Haselimashhadi H, Mason J, Moore MA, Stewart ME, Clary DA, Delbarre DJ, Anderson LC, D'Souza A, Goodwin LO, Harrison ME, Huang Z, Mckay M, Qu D, Santos L, Srinivasan S, Urban R, Vukobradovic I, Ward CS, Willett AM, Braun RE, Brown SDM, Dickinson ME, Heaney JD, Kumar V, Lloyd KCK, Mallon AM, McKerlie C, Murray SA, Nutter LMJ, Parkinson H, Seavitt JR, Wells S, Samaco RC, Chesler EJ, Smedley D, Diatchenko L, Baumbauer KM, Young EE, Bonin RP, Mandillo S, White JK, International Mouse Phenotyping Consortium | Pain | 35552317 | Pain | 2022 Jun 1 |
| CRIPT exonic deletion and a novel missense mutation in a female with short stature, dysmorphic features, microcephaly, and pigmentary abnormalities. | Leduc MS, Niu Z, Bi W, Zhu W, Miloslavskaya I, Chiang T, Streff H, Seavitt JR, Murray SA, Eng C, Chan A, Yang Y, Lalani SR | American journal of medical genetics. Part A | 27250922 | Am J Med Genet A | 2016 Aug |
| A Seminiferous Tubule Squash Technique for the Cytological Analysis of Spermatogenesis Using the Mouse Model. | Wellard SR, Hopkins J, Jordan PW | Journal of visualized experiments : JoVE | 29443055 | J Vis Exp | 2018 Feb 6 |
| Overlapping roles for PLK1 and Aurora A during meiotic centrosome biogenesis in mouse spermatocytes. | Wellard SR, Zhang Y, Shults C, Zhao X, McKay M, Murray SA, Jordan PW | EMBO reports | 33615678 | EMBO Rep | 2021 Apr 7 |
| A single-cell time-lapse of mouse prenatal development from gastrula to birth. | Qiu C, Martin BK, Welsh IC, Daza RM, Le TM, Huang X, Nichols EK, Taylor ML, Fulton O, O'Day DR, Gomes AR, Ilcisin S, Srivatsan S, Deng X, Disteche CM, Noble WS, Hamazaki N, Moens CB, Kimelman D, Cao J, Schier AF, Spielmann M, Murray SA, Trapnell C, Shendure J | Nature | 38355799 | Nature | 2024 Feb |
| Extensive identification of genes involved in congenital and structural heart disorders and cardiomyopathy. | Spielmann N, Miller G, Oprea TI, Hsu CW, Fobo G, Frishman G, Montrone C, Haseli Mashhadi H, Mason J, Munoz Fuentes V, Leuchtenberger S, Ruepp A, Wagner M, Westphal DS, Wolf C, Görlach A, Sanz-Moreno A, Cho YL, Teperino R, Brandmaier S, Sharma S, Galter IR, Östereicher MA, Zapf L, Mayer-Kuckuk P, Rozman J, Teboul L, Bunton-Stasyshyn RKA, Cater H, Stewart M, Christou S, Westerberg H, Willett AM, Wotton JM, Roper WB, Christiansen AE, Ward CS, Heaney JD, Reynolds CL, Prochazka J, Bower L, Clary D, Selloum M, Bou About G, Wendling O, Jacobs H, Leblanc S, Meziane H, Sorg T, Audain E, Gilly A, Rayner NW, IMPC consortium, Genomics England Research Consortium, Hitz MP, Zeggini E, Wolf E, Sedlacek R, Murray SA, Svenson KL, Braun RE, White JK, Kelsey L, Gao X, Shiroishi T, Xu Y, Seong JK, Mammano F, Tocchini-Valentini GP, Beaudet AL, Meehan TF, Parkinson H, Smedley D, Mallon AM, Wells SE, Grallert H, Wurst W, Marschall S, Fuchs H, Brown SDM, Flenniken AM, Nutter LMJ, McKerlie C, Herault Y, Lloyd KCK, Dickinson ME, Gailus-Durner V, Hrabe de Angelis M | Nature cardiovascular research | 39195995 | Nat Cardiovasc Res | 2022 Feb |
| The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation. | Muñoz-Fuentes V, Cacheiro P, Meehan TF, Aguilar-Pimentel JA, Brown SDM, Flenniken AM, Flicek P, Galli A, Mashhadi HH, Hrabě de Angelis M, Kim JK, Lloyd KCK, McKerlie C, Morgan H, Murray SA, Nutter LMJ, Reilly PT, Seavitt JR, Seong JK, Simon M, Wardle-Jones H, Mallon AM, Smedley D, Parkinson HE, IMPC consortium | Conservation genetics (Print) | 30100824 | Conserv Genet | 2018 |
| Phenotyping first-generation genome editing mutants: a new standard? | Teboul L, Murray SA, Nolan PM | Mammalian genome : official journal of the International Mammalian Genome Society | 28756587 | Mamm Genome | 2017 Aug |
| Robust mouse tracking in complex environments using neural networks. | Geuther BQ, Deats SP, Fox KJ, Murray SA, Braun RE, White JK, Chesler EJ, Lutz CM, Kumar V | Communications biology | 30937403 | Commun Biol | 2019 |
| A large scale hearing loss screen reveals an extensive unexplored genetic landscape for auditory dysfunction. | Bowl MR, Simon MM, Ingham NJ, Greenaway S, Santos L, Cater H, Taylor S, Mason J, Kurbatova N, Pearson S, Bower LR, Clary DA, Meziane H, Reilly P, Minowa O, Kelsey L, International Mouse Phenotyping Consortium, Tocchini-Valentini GP, Gao X, Bradley A, Skarnes WC, Moore M, Beaudet AL, Justice MJ, Seavitt J, Dickinson ME, Wurst W, de Angelis MH, Herault Y, Wakana S, Nutter LMJ, Flenniken AM, McKerlie C, Murray SA, Svenson KL, Braun RE, West DB, Lloyd KCK, Adams DJ, White J, Karp N, Flicek P, Smedley D, Meehan TF, Parkinson HE, Teboul LM, Wells S, Steel KP, Mallon AM, Brown SDM | Nature communications | 29026089 | Nat Commun | 2017 Oct 12 |
| The Deep Genome Project. | Lloyd KCK, Adams DJ, Baynam G, Beaudet AL, Bosch F, Boycott KM, Braun RE, Caulfield M, Cohn R, Dickinson ME, Dobbie MS, Flenniken AM, Flicek P, Galande S, Gao X, Grobler A, Heaney JD, Herault Y, de Angelis MH, Lupski JR, Lyonnet S, Mallon AM, Mammano F, MacRae CA, McInnes R, McKerlie C, Meehan TF, Murray SA, Nutter LMJ, Obata Y, Parkinson H, Pepper MS, Sedlacek R, Seong JK, Shiroishi T, Smedley D, Tocchini-Valentini G, Valle D, Wang CL, Wells S, White J, Wurst W, Xu Y, Brown SDM | Genome biology | 32008577 | Genome Biol | 2020 Feb 3 |
| Snx3 is important for mammalian neural tube closure via its role in canonical and non-canonical WNT signaling. | Brown HM, Murray SA, Northrup H, Au KS, Niswander LA | Development (Cambridge, England) | 33214242 | Development | 2020 Nov 19 |
| Mouse mutagenesis and phenotyping to generate models of development and disease. | Gridley T, Murray SA | Current topics in developmental biology | 35461561 | Curr Top Dev Biol | 2022 |
| Mendelian gene identification through mouse embryo viability screening. | Cacheiro P, Westerberg CH, Mager J, Dickinson ME, Nutter LMJ, Muñoz-Fuentes V, Hsu CW, Van den Veyver IB, Flenniken AM, McKerlie C, Murray SA, Teboul L, Heaney JD, Lloyd KCK, Lanoue L, Braun RE, White JK, Creighton AK, Laurin V, Guo R, Qu D, Wells S, Cleak J, Bunton-Stasyshyn R, Stewart M, Harrisson J, Mason J, Haseli Mashhadi H, Parkinson H, Mallon AM, International Mouse Phenotyping Consortium, Genomics England Research Consortium, Smedley D | Genome medicine | 36229886 | Genome Med | 2022 Oct 13 |
| High-throughput discovery of novel developmental phenotypes. | Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, International Mouse Phenotyping Consortium, Jackson Laboratory, Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris (ICS), Charles River Laboratories, MRC Harwell, Toronto Centre for Phenogenomics, Wellcome Trust Sanger Institute, RIKEN BioResource Center, MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bućan M, Murray SA | Nature | 27626380 | Nature | 2016 Sep 22 |
| SVEP1 plays a crucial role in epidermal differentiation. | Samuelov L, Li Q, Bochner R, Najor NA, Albrecht L, Malchin N, Goldsmith T, Grafi-Cohen M, Vodo D, Fainberg G, Meilik B, Goldberg I, Warshauer E, Rogers T, Edie S, Ishida-Yamamoto A, Burzenski L, Erez N, Murray SA, Irvine AD, Shultz L, Green KJ, Uitto J, Sprecher E, Sarig O | Experimental dermatology | 27892606 | Exp Dermatol | 2017 May |
| A Gene Implicated in Activation of Retinoic Acid Receptor Targets Is a Novel Renal Agenesis Gene in Humans. | Brophy PD, Rasmussen M, Parida M, Bonde G, Darbro BW, Hong X, Clarke JC, Peterson KA, Denegre J, Schneider M, Sussman CR, Sunde L, Lildballe DL, Hertz JM, Cornell RA, Murray SA, Manak JR | Genetics | 28739660 | Genetics | 2017 Sep |
| Sebaceous gland abnormalities in fatty acyl CoA reductase 2 (Far2) null mice result in primary cicatricial alopecia. | Sundberg JP, Shen T, Fiehn O, Rice RH, Silva KA, Kennedy VE, Gott NE, Dionne LA, Bechtold LS, Murray SA, Kuiper R, Pratt CH | PloS one | 30372477 | PLoS One | 2018 |
| Machine learning-based automated phenotyping of inflammatory nocifensive behavior in mice. | Wotton JM, Peterson E, Anderson L, Murray SA, Braun RE, Chesler EJ, White JK, Kumar V | Molecular pain | 32955381 | Mol Pain | 2020 Jan-Dec |
| Identification of genetic elements in metabolism by high-throughput mouse phenotyping. | Rozman J, Rathkolb B, Oestereicher MA, Schütt C, Ravindranath AC, Leuchtenberger S, Sharma S, Kistler M, Willershäuser M, Brommage R, Meehan TF, Mason J, Haselimashhadi H, IMPC Consortium, Hough T, Mallon AM, Wells S, Santos L, Lelliott CJ, White JK, Sorg T, Champy MF, Bower LR, Reynolds CL, Flenniken AM, Murray SA, Nutter LMJ, Svenson KL, West D, Tocchini-Valentini GP, Beaudet AL, Bosch F, Braun RB, Dobbie MS, Gao X, Herault Y, Moshiri A, Moore BA, Kent Lloyd KC, McKerlie C, Masuya H, Tanaka N, Flicek P, Parkinson HE, Sedlacek R, Seong JK, Wang CL, Moore M, Brown SD, Tschöp MH, Wurst W, Klingenspor M, Wolf E, Beckers J, Machicao F, Peter A, Staiger H, Häring HU, Grallert H, Campillos M, Maier H, Fuchs H, Gailus-Durner V, Werner T, Hrabe de Angelis M | Nature communications | 29348434 | Nat Commun | 2018 Jan 18 |
| Response to "Unexpected mutations after CRISPR-Cas9 editing in vivo". | Nutter LMJ, Heaney JD, Lloyd KCK, Murray SA, Seavitt JR, Skarnes WC, Teboul L, Brown SDM, Moore M | Nature methods | 29600991 | Nat Methods | 2018 Apr |
| CRISPRtools: a flexible computational platform for performing CRISPR/Cas9 experiments in the mouse. | Peterson KA, Beane GL, Goodwin LO, Kutny PM, Reinholdt LG, Murray SA | Mammalian genome : official journal of the International Mammalian Genome Society | 28280930 | Mamm Genome | 2017 Aug |
| Of mice and CRISPR: The post-CRISPR future of the mouse as a model system for the human condition. | Liu ET, Bolcun-Filas E, Grass DS, Lutz C, Murray S, Shultz L, Rosenthal N | EMBO reports | 28119373 | EMBO Rep | 2017 Feb |
| Large-scale discovery of mouse transgenic integration sites reveals frequent structural variation and insertional mutagenesis. | Goodwin LO, Splinter E, Davis TL, Urban R, He H, Braun RE, Chesler EJ, Kumar V, van Min M, Ndukum J, Philip VM, Reinholdt LG, Svenson K, White JK, Sasner M, Lutz C, Murray SA | Genome research | 30659012 | Genome Res | 2019 Mar |
| Generation and Characterization of a Knockout Mouse of an Enhancer of EBF3. | Hurtado EC, Wotton JM, Gulka A, Burke C, Ng JK, Bah I, Manuel J, Heins H, Murray SA, Gorkin DU, White JK, Peterson KA, Turner TN | bioRxiv : the preprint server for biology | 39829799 | bioRxiv | 2025 Jan 10 |
| Lethal phenotypes in Mendelian disorders. | Cacheiro P, Lawson S, Van den Veyver IB, Marengo G, Zocche D, Murray SA, Duyzend M, Robinson PN, Smedley D | Genetics in medicine : official journal of the American College of Medical Genetics | 38629401 | Genet Med | 2024 Jul |
| Lethal phenotypes in Mendelian disorders. | Cacheiro P, Lawson S, Van den Veyver IB, Marengo G, Zocche D, Murray SA, Duyzend M, Robinson PN, Smedley D | medRxiv : the preprint server for health sciences | 38260283 | medRxiv | 2024 Jan 13 |
| Discovery and validation of genes driving drug-intake and related behavioral traits in mice. | Roy TA, Bubier JA, Dickson PE, Wilcox TD, Ndukum J, Clark JW, Sukoff Rizzo SJ, Crabbe JC, Denegre JM, Svenson KL, Braun RE, Kumar V, Murray SA, White JK, Philip VM, Chesler EJ | Genes, brain, and behavior | 38164795 | Genes Brain Behav | 2024 Jan 2 |
| Impact of essential genes on the success of genome editing experiments generating 3313 new genetically engineered mouse lines. | Elrick H, Peterson KA, Willis BJ, Lanza DG, Acar EF, Ryder EJ, Teboul L, Kasparek P, Birling MC, Adams DJ, Bradley A, Braun RE, Brown SD, Caulder A, Codner GF, DeMayo FJ, Dickinson ME, Doe B, Duddy G, Gertsenstein M, Goodwin LO, Hérault Y, Lintott LG, Lloyd KCK, Lorenzo I, Mackenzie M, Mallon AM, McKerlie C, Parkinson H, Ramirez-Solis R, Seavitt JR, Sedlacek R, Skarnes WC, Smedley D, Wells S, White JK, Wood JA, International Mouse Phenotyping Consortium, Murray SA, Heaney JD, Nutter LMJ | Scientific reports | 39349521 | Sci Rep | 2024 Sep 30 |
| A resource of targeted mutant mouse lines for 5,061 genes. | Birling MC, Yoshiki A, Adams DJ, Ayabe S, Beaudet AL, Bottomley J, Bradley A, Brown SDM, Bürger A, Bushell W, Chiani F, Chin HG, Christou S, Codner GF, DeMayo FJ, Dickinson ME, Doe B, Donahue LR, Fray MD, Gambadoro A, Gao X, Gertsenstein M, Gomez-Segura A, Goodwin LO, Heaney JD, Hérault Y, de Angelis MH, Jiang ST, Justice MJ, Kasparek P, King RE, Kühn R, Lee H, Lee YJ, Liu Z, Lloyd KCK, Lorenzo I, Mallon AM, McKerlie C, Meehan TF, Fuentes VM, Newman S, Nutter LMJ, Oh GT, Pavlovic G, Ramirez-Solis R, Rosen B, Ryder EJ, Santos LA, Schick J, Seavitt JR, Sedlacek R, Seisenberger C, Seong JK, Skarnes WC, Sorg T, Steel KP, Tamura M, Tocchini-Valentini GP, Wang CL, Wardle-Jones H, Wattenhofer-Donzé M, Wells S, Wiles MV, Willis BJ, Wood JA, Wurst W, Xu Y, International Mouse Phenotyping Consortium (IMPC), Teboul L, Murray SA | Nature genetics | 33833456 | Nat Genet | 2021 Apr |
| Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium. | Meehan TF, Conte N, West DB, Jacobsen JO, Mason J, Warren J, Chen CK, Tudose I, Relac M, Matthews P, Karp N, Santos L, Fiegel T, Ring N, Westerberg H, Greenaway S, Sneddon D, Morgan H, Codner GF, Stewart ME, Brown J, Horner N, International Mouse Phenotyping Consortium, Haendel M, Washington N, Mungall CJ, Reynolds CL, Gallegos J, Gailus-Durner V, Sorg T, Pavlovic G, Bower LR, Moore M, Morse I, Gao X, Tocchini-Valentini GP, Obata Y, Cho SY, Seong JK, Seavitt J, Beaudet AL, Dickinson ME, Herault Y, Wurst W, de Angelis MH, Lloyd KCK, Flenniken AM, Nutter LMJ, Newbigging S, McKerlie C, Justice MJ, Murray SA, Svenson KL, Braun RE, White JK, Bradley A, Flicek P, Wells S, Skarnes WC, Adams DJ, Parkinson H, Mallon AM, Brown SDM, Smedley D | Nature genetics | 28650483 | Nat Genet | 2017 Aug |
| Systematic screening for skin, hair, and nail abnormalities in a large-scale knockout mouse program. | Sundberg JP, Dadras SS, Silva KA, Kennedy VE, Garland G, Murray SA, Sundberg BA, Schofield PN, Pratt CH | PloS one | 28700664 | PLoS One | 2017 |
| Mouse mutant phenotyping at scale reveals novel genes controlling bone mineral density. | Swan AL, Schütt C, Rozman J, Del Mar Muñiz Moreno M, Brandmaier S, Simon M, Leuchtenberger S, Griffiths M, Brommage R, Keskivali-Bond P, Grallert H, Werner T, Teperino R, Becker L, Miller G, Moshiri A, Seavitt JR, Cissell DD, Meehan TF, Acar EF, Lelliott CJ, Flenniken AM, Champy MF, Sorg T, Ayadi A, Braun RE, Cater H, Dickinson ME, Flicek P, Gallegos J, Ghirardello EJ, Heaney JD, Jacquot S, Lally C, Logan JG, Teboul L, Mason J, Spielmann N, McKerlie C, Murray SA, Nutter LMJ, Odfalk KF, Parkinson H, Prochazka J, Reynolds CL, Selloum M, Spoutil F, Svenson KL, Vales TS, Wells SE, White JK, Sedlacek R, Wurst W, Lloyd KCK, Croucher PI, Fuchs H, Williams GR, Bassett JHD, Gailus-Durner V, Herault Y, Mallon AM, Brown SDM, Mayer-Kuckuk P, Hrabe de Angelis M, IMPC Consortium | PLoS genetics | 33370286 | PLoS Genet | 2020 Dec |
| Detection of CRISPR-mediated genome modifications through altered methylation patterns of CpG islands. | Farris MH, Texter PA, Mora AA, Wiles MV, Mac Garrigle EF, Klaus SA, Rosfjord K | BMC genomics | 33267773 | BMC Genomics | 2020 Dec 2 |
| APOBEC1 complementation factor (A1CF) is dispensable for C-to-U RNA editing in vivo. | Snyder EM, McCarty C, Mehalow A, Svenson KL, Murray SA, Korstanje R, Braun RE | RNA (New York, N.Y.) | 28069890 | RNA | 2017 Apr |
| Soft windowing application to improve analysis of high-throughput phenotyping data. | Haselimashhadi H, Mason JC, Munoz-Fuentes V, López-Gómez F, Babalola K, Acar EF, Kumar V, White J, Flenniken AM, King R, Straiton E, Seavitt JR, Gaspero A, Garza A, Christianson AE, Hsu CW, Reynolds CL, Lanza DG, Lorenzo I, Green JR, Gallegos JJ, Bohat R, Samaco RC, Veeraragavan S, Kim JK, Miller G, Fuchs H, Garrett L, Becker L, Kang YK, Clary D, Cho SY, Tamura M, Tanaka N, Soo KD, Bezginov A, About GB, Champy MF, Vasseur L, Leblanc S, Meziane H, Selloum M, Reilly PT, Spielmann N, Maier H, Gailus-Durner V, Sorg T, Hiroshi M, Yuichi O, Heaney JD, Dickinson ME, Wolfgang W, Tocchini-Valentini GP, Lloyd KCK, McKerlie C, Seong JK, Yann H, de Angelis MH, Brown SDM, Smedley D, Flicek P, Mallon AM, Parkinson H, Meehan TF | Bioinformatics (Oxford, England) | 31591642 | Bioinformatics | 2020 Mar 1 |
| Prevalence of sexual dimorphism in mammalian phenotypic traits. | Karp NA, Mason J, Beaudet AL, Benjamini Y, Bower L, Braun RE, Brown SDM, Chesler EJ, Dickinson ME, Flenniken AM, Fuchs H, Angelis MH, Gao X, Guo S, Greenaway S, Heller R, Herault Y, Justice MJ, Kurbatova N, Lelliott CJ, Lloyd KCK, Mallon AM, Mank JE, Masuya H, McKerlie C, Meehan TF, Mott RF, Murray SA, Parkinson H, Ramirez-Solis R, Santos L, Seavitt JR, Smedley D, Sorg T, Speak AO, Steel KP, Svenson KL, International Mouse Phenotyping Consortium, Wakana S, West D, Wells S, Westerberg H, Yaacoby S, White JK | Nature communications | 28650954 | Nat Commun | 2017 Jun 26 |
| DISCOVERY AND VALIDATION OF GENES DRIVING DRUG-INTAKE AND RELATED BEHAVIORAL TRAITS IN MICE. | Roy TA, Bubier JA, Dickson PE, Wilcox TD, Ndukum J, Clark JW, Rizzo SJS, Crabbe JC, Denegre JM, Svenson KL, Braun RE, Kumar V, Murray SA, White JK, Philip VM, Chesler EJ | bioRxiv : the preprint server for biology | 37503148 | bioRxiv | 2023 Jul 10 |
| Whole genome analysis for 163 gRNAs in Cas9-edited mice reveals minimal off-target activity. | Peterson KA, Khalouei S, Hanafi N, Wood JA, Lanza DG, Lintott LG, Willis BJ, Seavitt JR, Braun RE, Dickinson ME, White JK, Lloyd KCK, Heaney JD, Murray SA, Ramani A, Nutter LMJ | Communications biology | 37301944 | Commun Biol | 2023 Jun 10 |
| A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pup. | Qiu C, Martin BK, Welsh IC, Daza RM, Le TM, Huang X, Nichols EK, Taylor ML, Fulton O, O'Day DR, Gomes AR, Ilcisin S, Srivatsan S, Deng X, Disteche CM, Noble WS, Hamazaki N, Moens CB, Kimelman D, Cao J, Schier AF, Spielmann M, Murray SA, Trapnell C, Shendure J | bioRxiv : the preprint server for biology | 37066300 | bioRxiv | 2023 Apr 5 |
| Identification of a heterogeneous and dynamic ciliome during embryonic development and cell differentiation. | Elliott KH, Balchand SK, Bonatto Paese CL, Chang CF, Yang Y, Brown KM, Rasicci DT, He H, Thorner K, Chaturvedi P, Murray SA, Chen J, Porollo A, Peterson KA, Brugmann SA | Development (Cambridge, England) | 36971348 | Development | 2023 Apr 15 |
| Comprehensive ECG reference intervals in C57BL/6N substrains provide a generalizable guide for cardiac electrophysiology studies in mice. | Oestereicher MA, Wotton JM, Ayabe S, Bou About G, Cheng TK, Choi JH, Clary D, Dew EM, Elfertak L, Guimond A, Haseli Mashhadi H, Heaney JD, Kelsey L, Keskivali-Bond P, Lopez Gomez F, Marschall S, McFarland M, Meziane H, Munoz Fuentes V, Nam KH, Nichtová Z, Pimm D, Bower L, Prochazka J, Rozman J, Santos L, Stewart M, Tanaka N, Ward CS, Willett AME, Wilson R, Braun RE, Dickinson ME, Flenniken AM, Herault Y, Lloyd KCK, Mallon AM, McKerlie C, Murray SA, Nutter LMJ, Sedlacek R, Seong JK, Sorg T, Tamura M, Wells S, Schneltzer E, Fuchs H, Gailus-Durner V, Hrabe de Angelis M, White JK, Spielmann N | Mammalian genome : official journal of the International Mammalian Genome Society | 37294348 | Mamm Genome | 2023 Jun |
| Further optimization of mouse spermatozoa evaporative drying techniques. | Elmoazzen HY, Lee GY, Li MW, McGinnis LK, Lloyd KC, Toner M, Biggers JD | Cryobiology | 19375415 | Cryobiology | 2009 Aug |
| Agouti C57BL/6N embryonic stem cells for mouse genetic resources. | Pettitt SJ, Liang Q, Rairdan XY, Moran JL, Prosser HM, Beier DR, Lloyd KC, Bradley A, Skarnes WC | Nature methods | 19525957 | Nat Methods | 2009 Jul |
| A novel 3D mouse embryo atlas based on micro-CT. | Wong MD, Dorr AE, Walls JR, Lerch JP, Henkelman RM | Development (Cambridge, England) | 22872090 | Development | 2012 Sep |
| Immunohistochemical analysis of sphingosine phosphate lyase expression during murine development. | Newbigging S, Zhang M, Saba JD | Gene expression patterns : GEP | 23041657 | Gene Expr Patterns | 2013 Jan-Feb |
| Structural and functional concepts in current mouse phenotyping and archiving facilities. | Kollmus H, Post R, Brielmeier M, Fernández J, Fuchs H, McKerlie C, Montoliu L, Otaegui PJ, Rebelo M, Riedesel H, Ruberte J, Sedlacek R, de Angelis MH, Schughart K | Journal of the American Association for Laboratory Animal Science : JAALAS | 23043807 | J Am Assoc Lab Anim Sci | 2012 Jul |
| Sphingosine-1-phosphate lyase expression in embryonic and adult murine tissues. | Borowsky AD, Bandhuvula P, Kumar A, Yoshinaga Y, Nefedov M, Fong LG, Zhang M, Baridon B, Dillard L, de Jong P, Young SG, West DB, Saba JD | Journal of lipid research | 22781001 | J Lipid Res | 2012 Sep |
| Mutations in SELENBP1, encoding a novel human methanethiol oxidase, cause extraoral halitosis. | Pol A, Renkema GH, Tangerman A, Winkel EG, Engelke UF, de Brouwer APM, Lloyd KC, Araiza RS, van den Heuvel L, Omran H, Olbrich H, Oude Elberink M, Gilissen C, Rodenburg RJ, Sass JO, Schwab KO, Schäfer H, Venselaar H, Sequeira JS, Op den Camp HJM, Wevers RA | Nature genetics | 29255262 | Nat Genet | 2018 Jan |
| Sympathetic inputs regulate adaptive thermogenesis in brown adipose tissue through cAMP-Salt inducible kinase axis. | Paulo E, Wu D, Wang Y, Zhang Y, Wu Y, Swaney DL, Soucheray M, Jimenez-Morales D, Chawla A, Krogan NJ, Wang B | Scientific reports | 30030465 | Sci Rep | 2018 Jul 20 |
| Renal proteomic analysis of RGC-32 knockout mice reveals the potential mechanism of RGC-32 in regulating cell cycle. | Hu YJ, Zhou Q, Li ZY, Feng D, Sun L, Shen YL, Huang WY | American journal of translational research | 29636874 | Am J Transl Res | 2018 |
| Beyond autophagy: a novel role for autism-linked Wdfy3 in brain mitophagy. | Napoli E, Song G, Panoutsopoulos A, Riyadh MA, Kaushik G, Halmai J, Levenson R, Zarbalis KS, Giulivi C | Scientific reports | 30054502 | Sci Rep | 2018 Jul 27 |
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| Cardiac reprogramming factor Gata4 reduces postinfarct cardiac fibrosis through direct repression of the profibrotic mediator snail. | Mathison M, Singh VP, Sanagasetti D, Yang L, Pinnamaneni JP, Yang J, Rosengart TK | The Journal of thoracic and cardiovascular surgery | 28711329 | J Thorac Cardiovasc Surg | 2017 Nov |
| Classifying murine glomerulonephritis using optical coherence tomography and optical coherence elastography. | Liu CH, Du Y, Singh M, Wu C, Han Z, Li J, Chang A, Mohan C, Larin KV | Journal of biophotonics | 26791097 | J Biophotonics | 2016 Aug |
| Optical coherence tomography as a tool for real-time visual feedback and biomechanical assessment of dermal filler injections: preliminary results in a pig skin model. | Singh M, Wang S, Yee RW, Larin KV | Experimental dermatology | 26910121 | Exp Dermatol | 2016 Jun |
| Cardiovascular Patterning as Determined by Hemodynamic Forces and Blood Vessel Genetics. | Anderson GA, Udan RS, Dickinson ME, Henkelman RM | PloS one | 26340748 | PLoS One | 2015 |
| In vivo micro-scale tomography of ciliary behavior in the mammalian oviduct. | Wang S, Burton JC, Behringer RR, Larina IV | Scientific reports | 26279472 | Sci Rep | 2015 Aug 17 |
| Optical Coherence Tomography for live imaging of mammalian development. | Larina IV, Larin KV, Justice MJ, Dickinson ME | Current opinion in genetics & development | 21962442 | Curr Opin Genet Dev | 2011 Oct |
| Preclinical research in Rett syndrome: setting the foundation for translational success. | Katz DM, Berger-Sweeney JE, Eubanks JH, Justice MJ, Neul JL, Pozzo-Miller L, Blue ME, Christian D, Crawley JN, Giustetto M, Guy J, Howell CJ, Kron M, Nelson SB, Samaco RC, Schaevitz LR, St Hillaire-Clarke C, Young JL, Zoghbi HY, Mamounas LA | Disease models & mechanisms | 23115203 | Dis Model Mech | 2012 Nov |
| Three-Dimensional High-Frequency Ultrasonography for Early Detection and Characterization of Embryo Implantation Site Development in the Mouse. | Peavey MC, Reynolds CL, Szwarc MM, Gibbons WE, Valdes CT, DeMayo FJ, Lydon JP | PloS one | 28046063 | PLoS One | 2017 |
| Evaluating the Effects of Riboflavin/UV-A and Rose-Bengal/Green Light Cross-Linking of the Rabbit Cornea by Noncontact Optical Coherence Elastography. | Singh M, Li J, Han Z, Vantipalli S, Liu CH, Wu C, Raghunathan R, Aglyamov SR, Twa MD, Larin KV | Investigative ophthalmology & visual science | 27409461 | Invest Ophthalmol Vis Sci | 2016 Jul 1 |
| Four-dimensional live imaging of hemodynamics in mammalian embryonic heart with Doppler optical coherence tomography. | Wang S, Lakomy DS, Garcia MD, Lopez AL 3rd, Larin KV, Larina IV | Journal of biophotonics | 26996292 | J Biophotonics | 2016 Aug |
| Long-term pulmonary and cardiovascular morbidities of neonatal hyperoxia exposure in mice. | Menon RT, Shrestha AK, Reynolds CL, Barrios R, Shivanna B | The international journal of biochemistry & cell biology | 29223466 | Int J Biochem Cell Biol | 2018 Jan |
| A scoring system for the evaluation of the mutated Crb1/rd8-derived retinal lesions in C57BL/6N mice. | Concas D, Cater H, Wells S | F1000Research | 28928942 | F1000Res | 2017 |
| Hippo Signaling Plays an Essential Role in Cell State Transitions during Cardiac Fibroblast Development. | Xiao Y, Hill MC, Zhang M, Martin TJ, Morikawa Y, Wang S, Moise AR, Wythe JD, Martin JF | Developmental cell | 29689192 | Dev Cell | 2018 Apr 23 |
| Quantitative assessment of corneal viscoelasticity using optical coherence elastography and a modified Rayleigh-Lamb equation. | Han Z, Aglyamov SR, Li J, Singh M, Wang S, Vantipalli S, Wu C, Liu CH, Twa MD, Larin KV | Journal of biomedical optics | 25649624 | J Biomed Opt | 2015 Feb |
| Differentiating untreated and cross-linked porcine corneas of the same measured stiffness with optical coherence elastography. | Li J, Han Z, Singh M, Twa MD, Larin KV | Journal of biomedical optics | 25408955 | J Biomed Opt | 2014 Nov |
| Phase-sensitive optical coherence elastography at 1.5 million A-Lines per second. | Singh M, Wu C, Liu CH, Li J, Schill A, Nair A, Larin KV | Optics letters | 26030564 | Opt Lett | 2015 Jun 1 |
| Knock-in mice harboring a Ca(2+) desensitizing mutation in cardiac troponin C develop early onset dilated cardiomyopathy. | McConnell BK, Singh S, Fan Q, Hernandez A, Portillo JP, Reiser PJ, Tikunova SB | Frontiers in physiology | 26379556 | Front Physiol | 2015 |
| Rotational imaging optical coherence tomography for full-body mouse embryonic imaging. | Wu C, Sudheendran N, Singh M, Larina IV, Dickinson ME, Larin KV | Journal of biomedical optics | 26848543 | J Biomed Opt | 2016 Feb |
| C13orf31 (FAMIN) is a central regulator of immunometabolic function. | Cader MZ, Boroviak K, Zhang Q, Assadi G, Kempster SL, Sewell GW, Saveljeva S, Ashcroft JW, Clare S, Mukhopadhyay S, Brown KP, Tschurtschenthaler M, Raine T, Doe B, Chilvers ER, Griffin JL, Kaneider NC, Floto RA, D'Amato M, Bradley A, Wakelam MJ, Dougan G, Kaser A | Nature immunology | 27478939 | Nat Immunol | 2016 Sep |
| Mesp1 Marked Cardiac Progenitor Cells Repair Infarcted Mouse Hearts. | Liu Y, Chen L, Diaz AD, Benham A, Xu X, Wijaya CS, Fa'ak F, Luo W, Soibam B, Azares A, Yu W, Lyu Q, Stewart MD, Gunaratne P, Cooney A, McConnell BK, Schwartz RJ | Scientific reports | 27538477 | Sci Rep | 2016 Aug 19 |
| Noncontact Elastic Wave Imaging Optical Coherence Elastography for Evaluating Changes in Corneal Elasticity Due to Crosslinking. | Singh M, Li J, Vantipalli S, Wang S, Han Z, Nair A, Aglyamov SR, Twa MD, Larin KV | IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society | 27547022 | IEEE J Sel Top Quantum Electron | 2016 May-Jun |
| Vascular development and hemodynamic force in the mouse yolk sac. | Garcia MD, Larina IV | Frontiers in physiology | 25191274 | Front Physiol | 2014 |
| Special section guest editorial: Optical coherence tomography and interferometry: advanced engineering and biomedical applications. | Larin KV, Tuchin VV, Vitkin A | Journal of biomedical optics | 24570205 | J Biomed Opt | 2014 Feb |
| Tie-2 Cre-Mediated Deficiency of Extracellular Signal-Regulated Kinase 2 Potentiates Experimental Bronchopulmonary Dysplasia-Associated Pulmonary Hypertension in Neonatal Mice. | Menon RT, Shrestha AK, Barrios R, Reynolds C, Shivanna B | International journal of molecular sciences | 32244398 | Int J Mol Sci | 2020 Mar 31 |
| Optical coherence elastography for tissue characterization: a review. | Wang S, Larin KV | Journal of biophotonics | 25412100 | J Biophotonics | 2015 Apr |
| Rapid conversion of EUCOMM/KOMP-CSD alleles in mouse embryos using a cell-permeable Cre recombinase. | Ryder E, Doe B, Gleeson D, Houghton R, Dalvi P, Grau E, Habib B, Miklejewska E, Newman S, Sethi D, Sinclair C, Vyas S, Wardle-Jones H, Sanger Mouse Genetics Project, Bottomley J, Bussell J, Galli A, Salisbury J, Ramirez-Solis R | Transgenic research | 24197666 | Transgenic Res | 2014 Feb |
| A mouse model for inducible overexpression of Prdm14 results in rapid-onset and highly penetrant T-cell acute lymphoblastic leukemia (T-ALL). | Carofino BL, Ayanga B, Justice MJ | Disease models & mechanisms | 24046360 | Dis Model Mech | 2013 Nov |
| The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotyping. | Brown SD, Moore MW | Mammalian genome : official journal of the International Mammalian Genome Society | 22940749 | Mamm Genome | 2012 Oct |
| Dynamic imaging and quantitative analysis of cranial neural tube closure in the mouse embryo using optical coherence tomography. | Wang S, Garcia MD, Lopez AL 3rd, Overbeek PA, Larin KV, Larina IV | Biomedical optics express | 28101427 | Biomed Opt Express | 2017 Jan 1 |
| Algorithms for improved 3-D reconstruction of live mammalian embryo vasculature from optical coherence tomography data. | Kulkarni PM, Rey-Villamizar N, Merouane A, Sudheendran N, Wang S, Garcia M, Larina IV, Roysam B, Larin KV | Quantitative imaging in medicine and surgery | 25694962 | Quant Imaging Med Surg | 2015 Feb |
| A chemical chaperone improves muscle function in mice with a RyR1 mutation. | Lee CS, Hanna AD, Wang H, Dagnino-Acosta A, Joshi AD, Knoblauch M, Xia Y, Georgiou DK, Xu J, Long C, Amano H, Reynolds C, Dong K, Martin JC, Lagor WR, Rodney GG, Sahin E, Sewry C, Hamilton SL | Nature communications | 28337975 | Nat Commun | 2017 Mar 24 |
| Quantifying tissue viscoelasticity using optical coherence elastography and the Rayleigh wave model. | Han Z, Singh M, Aglyamov SR, Liu CH, Nair A, Raghunathan R, Wu C, Li J, Larin KV | Journal of biomedical optics | 27653931 | J Biomed Opt | 2016 Sep 1 |
| The impact of intraocular pressure on elastic wave velocity estimates in the crystalline lens. | Park S, Yoon H, Larin KV, Emelianov SY, Aglyamov SR | Physics in medicine and biology | 27997379 | Phys Med Biol | 2017 Feb 7 |
| Neonatal cardiac dysfunction and transcriptome changes caused by the absence of Celf1. | Giudice J, Xia Z, Li W, Cooper TA | Scientific reports | 27759042 | Sci Rep | 2016 Oct 19 |
| Junctophilin-2 gene therapy rescues heart failure by normalizing RyR2-mediated Ca(2+) release. | Reynolds JO, Quick AP, Wang Q, Beavers DL, Philippen LE, Showell J, Barreto-Torres G, Thuerauf DJ, Doroudgar S, Glembotski CC, Wehrens XH | International journal of cardiology | 27760414 | Int J Cardiol | 2016 Dec 15 |
| Investigating Elastic Anisotropy of the Porcine Cornea as a Function of Intraocular Pressure With Optical Coherence Elastography. | Singh M, Li J, Han Z, Wu C, Aglyamov SR, Twa MD, Larin KV | Journal of refractive surgery (Thorofare, N.J. : 1995) | 27505317 | J Refract Surg | 2016 Aug 1 |
| Analysis of the effects of curvature and thickness on elastic wave velocity in cornea-like structures by finite element modeling and optical coherence elastography. | Han Z, Li J, Singh M, Aglyamov SR, Wu C, Liu CH, Larin KV | Applied physics letters | 26130825 | Appl Phys Lett | 2015 Jun 8 |
| Biomechanical assessment of myocardial infarction using optical coherence elastography. | Wang S, Singh M, Tran TT, Leach J, Aglyamov SR, Larina IV, Martin JF, Larin KV | Biomedical optics express | 29552408 | Biomed Opt Express | 2018 Feb 1 |
| Enhanced Cardiomyocyte NLRP3 Inflammasome Signaling Promotes Atrial Fibrillation. | Yao C, Veleva T, Scott L Jr, Cao S, Li L, Chen G, Jeyabal P, Pan X, Alsina KM, Abu-Taha I Dr, Ghezelbash S, Reynolds CL, Shen YH, LeMaire SA, Schmitz W, Müller FU, El-Armouche A, Tony Eissa N, Beeton C, Nattel S, Wehrens XHT, Dobrev D, Li N | Circulation | 29802206 | Circulation | 2018 Nov 13 |
| A novel model of gestational diabetes: Acute high fat high sugar diet results in insulin resistance and beta cell dysfunction during pregnancy in mice. | Mishra A, Ruano SH, Saha PK, Pennington KA | PloS one | 36520818 | PLoS One | 2022 |
| Hippo pathway deletion in adult resting cardiac fibroblasts initiates a cell state transition with spontaneous and self-sustaining fibrosis. | Xiao Y, Hill MC, Li L, Deshmukh V, Martin TJ, Wang J, Martin JF | Genes & development | 31558567 | Genes Dev | 2019 Nov 1 |
| PIK3CA variants selectively initiate brain hyperactivity during gliomagenesis. | Yu K, Lin CJ, Hatcher A, Lozzi B, Kong K, Huang-Hobbs E, Cheng YT, Beechar VB, Zhu W, Zhang Y, Chen F, Mills GB, Mohila CA, Creighton CJ, Noebels JL, Scott KL, Deneen B | Nature | 31996845 | Nature | 2020 Feb |
| Adrenomedullin Is Necessary to Resolve Hyperoxia-Induced Experimental Bronchopulmonary Dysplasia and Pulmonary Hypertension in Mice. | Menon RT, Shrestha AK, Reynolds CL, Barrios R, Caron KM, Shivanna B | The American journal of pathology | 32093901 | Am J Pathol | 2020 Mar |
| Luciferase Reporter Mice for In Vivo Monitoring and Ex Vivo Assessment of Hypothalamic Signaling of Socs3 Expression. | Cordonier EL, Liu T, Saito K, Chen SS, Xu Y, Fukuda M | Journal of the Endocrine Society | 31214662 | J Endocr Soc | 2019 Jul 1 |
| Optical coherence tomography guided microinjections in live mouse embryos: high-resolution targeted manipulation for mouse embryonic research. | Syed SH, Coughlin AJ, Garcia MD, Wang S, West JL, Larin KV, Larina IV | Journal of biomedical optics | 25581495 | J Biomed Opt | 2015 May |
| Quantitative methods for reconstructing tissue biomechanical properties in optical coherence elastography: a comparison study. | Han Z, Li J, Singh M, Wu C, Liu CH, Wang S, Idugboe R, Raghunathan R, Sudheendran N, Aglyamov SR, Twa MD, Larin KV | Physics in medicine and biology | 25860076 | Phys Med Biol | 2015 May 7 |
| Interactive and independent effects of early lipopolysaccharide and hyperoxia exposure on developing murine lungs. | Shrestha AK, Menon RT, El-Saie A, Barrios R, Reynolds C, Shivanna B | American journal of physiology. Lung cellular and molecular physiology | 32901520 | Am J Physiol Lung Cell Mol Physiol | 2020 Dec 1 |
| A cellular atlas of Pitx2-dependent cardiac development. | Hill MC, Kadow ZA, Li L, Tran TT, Wythe JD, Martin JF | Development (Cambridge, England) | 31201182 | Development | 2019 Jun 14 |
| Phenotypic assessment of pulmonary hypertension using high-resolution echocardiography is feasible in neonatal mice with experimental bronchopulmonary dysplasia and pulmonary hypertension: a step toward preventing chronic obstructive pulmonary disease. | Reynolds CL, Zhang S, Shrestha AK, Barrios R, Shivanna B | International journal of chronic obstructive pulmonary disease | 27478373 | Int J Chron Obstruct Pulmon Dis | 2016 |
| Loss-of-Function Mutations in FRRS1L Lead to an Epileptic-Dyskinetic Encephalopathy. | Madeo M, Stewart M, Sun Y, Sahir N, Wiethoff S, Chandrasekar I, Yarrow A, Rosenfeld JA, Yang Y, Cordeiro D, McCormick EM, Muraresku CC, Jepperson TN, McBeth LJ, Seidahmed MZ, El Khashab HY, Hamad M, Azzedine H, Clark K, Corrochano S, Wells S, Elting MW, Weiss MM, Burn S, Myers A, Landsverk M, Crotwell PL, Waisfisz Q, Wolf NI, Nolan PM, Padilla-Lopez S, Houlden H, Lifton R, Mane S, Singh BB, Falk MJ, Mercimek-Mahmutoglu S, Bilguvar K, Salih MA, Acevedo-Arozena A, Kruer MC | American journal of human genetics | 27236917 | Am J Hum Genet | 2016 Jun 2 |
| SPEG (Striated Muscle Preferentially Expressed Protein Kinase) Is Essential for Cardiac Function by Regulating Junctional Membrane Complex Activity. | Quick AP, Wang Q, Philippen LE, Barreto-Torres G, Chiang DY, Beavers D, Wang G, Khalid M, Reynolds JO, Campbell HM, Showell J, McCauley MD, Scholten A, Wehrens XH | Circulation research | 27729468 | Circ Res | 2017 Jan 6 |
| Loss of arylformamidase with reduced thymidine kinase expression leads to impaired glucose tolerance. | Hugill AJ, Stewart ME, Yon MA, Probert F, Cox IJ, Hough TA, Scudamore CL, Bentley L, Wall G, Wells SE, Cox RD | Biology open | 26432886 | Biol Open | 2015 Oct 2 |
| Live four-dimensional optical coherence tomography reveals embryonic cardiac phenotype in mouse mutant. | Lopez AL 3rd, Wang S, Larin KV, Overbeek PA, Larina IV | Journal of biomedical optics | 26385422 | J Biomed Opt | 2015 |
| Zic3 is required in the extra-cardiac perinodal region of the lateral plate mesoderm for left-right patterning and heart development. | Jiang Z, Zhu L, Hu L, Slesnick TC, Pautler RG, Justice MJ, Belmont JW | Human molecular genetics | 23184148 | Hum Mol Genet | 2013 Mar 1 |
| Yap and Taz play a crucial role in neural crest-derived craniofacial development. | Wang J, Xiao Y, Hsu CW, Martinez-Traverso IM, Zhang M, Bai Y, Ishii M, Maxson RE, Olson EN, Dickinson ME, Wythe JD, Martin JF | Development (Cambridge, England) | 26718006 | Development | 2016 Feb 1 |
| Rapid, noninvasive quantitation of skin disease in systemic sclerosis using optical coherence elastography. | Du Y, Liu CH, Lei L, Singh M, Li J, Hicks MJ, Larin KV, Mohan C | Journal of biomedical optics | 27048877 | J Biomed Opt | 2016 Apr 30 |
| High-resolution three-dimensional in vivo imaging of mouse oviduct using optical coherence tomography. | Burton JC, Wang S, Stewart CA, Behringer RR, Larina IV | Biomedical optics express | 26203393 | Biomed Opt Express | 2015 Jul 1 |
| Optical coherence tomography for embryonic imaging: a review. | Raghunathan R, Singh M, Dickinson ME, Larin KV | Journal of biomedical optics | 27228503 | J Biomed Opt | 2016 May 1 |
| Dystrophin-glycoprotein complex sequesters Yap to inhibit cardiomyocyte proliferation. | Morikawa Y, Heallen T, Leach J, Xiao Y, Martin JF | Nature | 28581498 | Nature | 2017 Jul 13 |
| Speckle variance optical coherence tomography of blood flow in the beating mouse embryonic heart. | Grishina OA, Wang S, Larina IV | Journal of biophotonics | 28417585 | J Biophotonics | 2017 May |
| Tead1 is required for maintaining adult cardiomyocyte function, and its loss results in lethal dilated cardiomyopathy. | Liu R, Lee J, Kim BS, Wang Q, Buxton SK, Balasubramanyam N, Kim JJ, Dong J, Zhang A, Li S, Gupte AA, Hamilton DJ, Martin JF, Rodney GG, Coarfa C, Wehrens XH, Yechoor VK, Moulik M | JCI insight | 28878117 | JCI Insight | 2017 Sep 7 |
| Lorentz force optical coherence elastography. | Wu C, Singh M, Han Z, Raghunathan R, Liu CH, Li J, Schill A, Larin KV | Journal of biomedical optics | 27622242 | J Biomed Opt | 2016 Sep 1 |
| Long-range Pitx2c enhancer-promoter interactions prevent predisposition to atrial fibrillation. | Zhang M, Hill MC, Kadow ZA, Suh JH, Tucker NR, Hall AW, Tran TT, Swinton PS, Leach JP, Margulies KB, Ellinor PT, Li N, Martin JF | Proceedings of the National Academy of Sciences of the United States of America | 31636200 | Proc Natl Acad Sci U S A | 2019 Nov 5 |
| Identification of distinct stool metabolites in women with endometriosis for non-invasive diagnosis and potential for microbiota-based therapies. | Talwar C, Davuluri GVN, Kamal AHM, Coarfa C, Han SJ, Veeraragavan S, Parsawar K, Putluri N, Hoffman K, Jimenez P, Biest S, Kommagani R | Med (New York, N.Y.) | 39395412 | Med | 2025 Feb 14 |
| CRISPR-Cas9-mediated genome editing and guide RNA design. | Wiles MV, Qin W, Cheng AW, Wang H | Mammalian genome : official journal of the International Mammalian Genome Society | 25991564 | Mamm Genome | 2015 Oct |
| Scaling up phenotyping studies. | Svenson KL | Nature biotechnology | 26544146 | Nat Biotechnol | 2015 Nov |
| Effector gene expression underlying neuron subtype-specific traits in the Motor Ganglion of Ciona. | Gibboney S, Orvis J, Kim K, Johnson CJ, Martinez-Feduchi P, Lowe EK, Sharma S, Stolfi A | Developmental biology | 31639337 | Dev Biol | 2020 Feb 1 |
| ADAD2 regulates heterochromatin in meiotic and post-meiotic male germ cells via translation of MDC1. | Chukrallah LG, Badrinath A, Vittor GG, Snyder EM | Journal of cell science | 35191498 | J Cell Sci | 2022 Feb 15 |
| ADAD1 and ADAD2, testis-specific adenosine deaminase domain-containing proteins, are required for male fertility. | Snyder E, Chukrallah L, Seltzer K, Goodwin L, Braun RE | Scientific reports | 32665638 | Sci Rep | 2020 Jul 14 |
| Elevation of 20-carbon long chain bases due to a mutation in serine palmitoyltransferase small subunit b results in neurodegeneration. | Zhao L, Spassieva S, Gable K, Gupta SD, Shi LY, Wang J, Bielawski J, Hicks WL, Krebs MP, Naggert J, Hannun YA, Dunn TM, Nishina PM | Proceedings of the National Academy of Sciences of the United States of America | 26438849 | Proc Natl Acad Sci U S A | 2015 Oct 20 |
| Excavating the Genome: Large-Scale Mutagenesis Screening for the Discovery of New Mouse Models. | Sundberg JP, Dadras SS, Silva KA, Kennedy VE, Murray SA, Denegre JM, Schofield PN, King LE Jr, Wiles MV, Pratt CH | The journal of investigative dermatology. Symposium proceedings | 26551941 | J Investig Dermatol Symp Proc | 2015 Nov |
| Meiosis-specific cohesin component, Stag3 is essential for maintaining centromere chromatid cohesion, and required for DNA repair and synapsis between homologous chromosomes. | Hopkins J, Hwang G, Jacob J, Sapp N, Bedigian R, Oka K, Overbeek P, Murray S, Jordan PW | PLoS genetics | 24992337 | PLoS Genet | 2014 Jul |
| The complex genetics of hypoplastic left heart syndrome. | Liu X, Yagi H, Saeed S, Bais AS, Gabriel GC, Chen Z, Peterson KA, Li Y, Schwartz MC, Reynolds WT, Saydmohammed M, Gibbs B, Wu Y, Devine W, Chatterjee B, Klena NT, Kostka D, de Mesy Bentley KL, Ganapathiraju MK, Dexheimer P, Leatherbury L, Khalifa O, Bhagat A, Zahid M, Pu W, Watkins S, Grossfeld P, Murray SA, Porter GA Jr, Tsang M, Martin LJ, Benson DW, Aronow BJ, Lo CW | Nature genetics | 28530678 | Nat Genet | 2017 Jul |
| A graph theoretical approach to experimental prioritization in genome-scale investigations. | Grady SK, Peterson KA, Murray SA, Baker EJ, Langston MA, Chesler EJ | Mammalian genome : official journal of the International Mammalian Genome Society | 39191873 | Mamm Genome | 2024 Dec |
| The perfect host: a mouse host embryo facilitating more efficient germ line transmission of genetically modified embryonic stem cells. | Taft RA, Low BE, Byers SL, Murray SA, Kutny P, Wiles MV | PloS one | 23844102 | PLoS One | 2013 |
| Mutations in SMG9, Encoding an Essential Component of Nonsense-Mediated Decay Machinery, Cause a Multiple Congenital Anomaly Syndrome in Humans and Mice. | Shaheen R, Anazi S, Ben-Omran T, Seidahmed MZ, Caddle LB, Palmer K, Ali R, Alshidi T, Hagos S, Goodwin L, Hashem M, Wakil SM, Abouelhoda M, Colak D, Murray SA, Alkuraya FS | American journal of human genetics | 27018474 | Am J Hum Genet | 2016 Apr 7 |
| WDFY4 is required for cross-presentation in response to viral and tumor antigens. | Theisen DJ, Davidson JT 4th, Briseño CG, Gargaro M, Lauron EJ, Wang Q, Desai P, Durai V, Bagadia P, Brickner JR, Beatty WL, Virgin HW, Gillanders WE, Mosammaparast N, Diamond MS, Sibley LD, Yokoyama W, Schreiber RD, Murphy TL, Murphy KM | Science (New York, N.Y.) | 30409884 | Science | 2018 Nov 9 |
| Safety, efficacy and efficiency of laser-assisted IVF in subfertile mutant mouse strains. | Li MW, Kinchen KL, Vallelunga JM, Young DL, Wright KD, Gorano LN, Wasson K, Lloyd KC | Reproduction (Cambridge, England) | 23315689 | Reproduction | 2013 Mar 1 |
| Aneuploidy screening of embryonic stem cell clones by metaphase karyotyping and droplet digital polymerase chain reaction. | Codner GF, Lindner L, Caulder A, Wattenhofer-Donzé M, Radage A, Mertz A, Eisenmann B, Mianné J, Evans EP, Beechey CV, Fray MD, Birling MC, Hérault Y, Pavlovic G, Teboul L | BMC cell biology | 27496052 | BMC Cell Biol | 2016 Aug 5 |
| Genetically Engineered Mice by Pronuclear DNA microinjection. | Demayo JL, Wang J, Liang D, Zhang R, Demayo FJ | Current protocols in mouse biology | 23024927 | Curr Protoc Mouse Biol | 2012 Sep 1 |
| Importing genetically altered animals: ensuring quality. | Birling MC, Fray MD, Kasparek P, Kopkanova J, Massimi M, Matteoni R, Montoliu L, Nutter LMJ, Raspa M, Rozman J, Ryder EJ, Scavizzi F, Voikar V, Wells S, Pavlovic G, Teboul L | Mammalian genome : official journal of the International Mammalian Genome Society | 34536110 | Mamm Genome | 2022 Mar |
| Revealing hidden complexities of genomic rearrangements generated with Cas9. | Boroviak K, Fu B, Yang F, Doe B, Bradley A | Scientific reports | 28993641 | Sci Rep | 2017 Oct 9 |
| High-resolution μCT of a mouse embryo using a compact laser-driven X-ray betatron source. | Cole JM, Symes DR, Lopes NC, Wood JC, Poder K, Alatabi S, Botchway SW, Foster PS, Gratton S, Johnson S, Kamperidis C, Kononenko O, De Lazzari M, Palmer CAJ, Rusby D, Sanderson J, Sandholzer M, Sarri G, Szoke-Kovacs Z, Teboul L, Thompson JM, Warwick JR, Westerberg H, Hill MA, Norris DP, Mangles SPD, Najmudin Z | Proceedings of the National Academy of Sciences of the United States of America | 29871946 | Proc Natl Acad Sci U S A | 2018 Jun 19 |
| Endothelial TFEB (Transcription Factor EB) Positively Regulates Postischemic Angiogenesis. | Fan Y, Lu H, Liang W, Garcia-Barrio MT, Guo Y, Zhang J, Zhu T, Hao Y, Zhang J, Chen YE | Circulation research | 29467198 | Circ Res | 2018 Mar 30 |
| Loss of function of NCOR1 and NCOR2 impairs memory through a novel GABAergic hypothalamus-CA3 projection. | Zhou W, He Y, Rehman AU, Kong Y, Hong S, Ding G, Yalamanchili HK, Wan YW, Paul B, Wang C, Gong Y, Zhou W, Liu H, Dean J, Scalais E, O'Driscoll M, Morton JEV, DDD study, Hou X, Wu Q, Tong Q, Liu Z, Liu P, Xu Y, Sun Z | Nature neuroscience | 30664766 | Nat Neurosci | 2019 Feb |
| Long-read sequencing for fast and robust identification of correct genome-edited alleles: PCR-based and Cas9 capture methods. | McCabe CV, Price PD, Codner GF, Allan AJ, Caulder A, Christou S, Loeffler J, Mackenzie M, Malzer E, Mianné J, Nowicki KJ, O'Neill EJ, Pike FJ, Hutchison M, Petit-Demoulière B, Stewart ME, Gates H, Wells S, Sanderson ND, Teboul L | PLoS genetics | 38457464 | PLoS Genet | 2024 Mar |
| Universal Southern blot protocol with cold or radioactive probes for the validation of alleles obtained by homologous recombination. | Codner GF, Erbs V, Loeffler J, Chessum L, Caulder A, Jullien N, Wells S, Birling MC, Teboul L | Methods (San Diego, Calif.) | 32599056 | Methods | 2021 Jul |
| Screening and validation of genome-edited animals. | Bunton-Stasyshyn RK, Codner GF, Teboul L | Laboratory animals | 34192966 | Lab Anim | 2022 Feb |
| Anticipating and Identifying Collateral Damage in Genome Editing. | Burgio G, Teboul L | Trends in genetics : TIG | 33039248 | Trends Genet | 2020 Dec |
| Analysing the outcome of CRISPR-aided genome editing in embryos: Screening, genotyping and quality control. | Mianné J, Codner GF, Caulder A, Fell R, Hutchison M, King R, Stewart ME, Wells S, Teboul L | Methods (San Diego, Calif.) | 28363792 | Methods | 2017 May 15 |
| Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR. | Haeussler M, Schönig K, Eckert H, Eschstruth A, Mianné J, Renaud JB, Schneider-Maunoury S, Shkumatava A, Teboul L, Kent J, Joly JS, Concordet JP | Genome biology | 27380939 | Genome Biol | 2016 Jul 5 |
| A gene expression resource generated by genome-wide lacZ profiling in the mouse. | Tuck E, Estabel J, Oellrich A, Maguire AK, Adissu HA, Souter L, Siragher E, Lillistone C, Green AL, Wardle-Jones H, Carragher DM, Karp NA, Smedley D, Adams NC, Sanger Institute Mouse Genetics Project, Bussell JN, Adams DJ, Ramírez-Solis R, Steel KP, Galli A, White JK | Disease models & mechanisms | 26398943 | Dis Model Mech | 2015 Nov |
| Chromosome engineering in zygotes with CRISPR/Cas9. | Boroviak K, Doe B, Banerjee R, Yang F, Bradley A | Genesis (New York, N.Y. : 2000) | 26742453 | Genesis | 2016 Feb |
