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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Authors | Journal | PubMedID | Publication Date |
|---|---|---|---|---|
| Easy Hi-C: A Low-Input Method for Capturing Genome Organization. | Lu, Leina; Jin, Fulai | Methods in molecular biology (Clifton, N.J.) | 36427146 | 2023 |
| Novel correlative analysis identifies multiple genomic variations impacting ASD with macrocephaly. | Fu, Chen; Ngo, Justine; Zhang, Shanshan; Lu, Leina; Miron, Alexander; Schafer, Simon; Gage, Fred H; Jin, Fulai; Schumacher, Fredrick R; Wynshaw-Boris, Anthony | Human molecular genetics | 36519762 | 2023 May 05 |
| High-quality nuclei isolation from postmortem human heart muscle tissues for single-cell studies. | Araten, Sarah; Mathieu, Ronald; Jetly, Anushka; Shin, Hoon; Hilal, Nazia; Zhang, Bo; Morillo, Katherine; Nandan, Deepa; Sivankutty, Indu; Chen, Ming Hui; Choudhury, Sangita | Journal of molecular and cellular cardiology | 36977444 | 2023 Jun |
| Ancestry-related differences in chromatin accessibility and gene expression of APOE ε4 are associated with Alzheimer's disease risk. | Celis, Katrina; Moreno, Maria D M Muniz; Rajabli, Farid; Whitehead, Patrice; Hamilton-Nelson, Kara; Dykxhoorn, Derek M; Nuytemans, Karen; Wang, Liyong; Flanagan, Margaret; Weintraub, Sandra; Geula, Changiz; Gearing, Marla; Dalgard, Clifton L; Jin, Fulai; Bennett, David A; Schuck, Theresa; Pericak-Vance, Margaret A; Griswold, Anthony J; Young, Juan I; Vance, Jeffery M | Alzheimer's & dementia : the journal of the Alzheimer's Association | 37037656 | 2023 Sep |
| Single-cell multi-omics defines the cell-type-specific impact of splicing aberrations in human hematopoietic clonal outgrowths. | Cortés-López, Mariela; Chamely, Paulina; Hawkins, Allegra G; Stanley, Robert F; Swett, Ariel D; Ganesan, Saravanan; Mouhieddine, Tarek H; Dai, Xiaoguang; Kluegel, Lloyd; Chen, Celine; Batta, Kiran; Furer, Nili; Vedula, Rahul S; Beaulaurier, John; Drong, Alexander W; Hickey, Scott; Dusaj, Neville; Mullokandov, Gavriel; Stasiw, Adam M; Su, Jiayu; Chaligné, Ronan; Juul, Sissel; Harrington, Eoghan; Knowles, David A; Potenski, Catherine J; Wiseman, Daniel H; Tanay, Amos; Shlush, Liran; Lindsley, Robert C; Ghobrial, Irene M; Taylor, Justin; Abdel-Wahab, Omar; Gaiti, Federico; Landau, Dan A | Cell stem cell | 37582363 | 2023 Sep 07 |
| Single-cell somatic copy number variants in brain using different amplification methods and reference genomes. | Kalef-Ezra, Ester; Turan, Zeliha Gozde; Perez-Rodriguez, Diego; Bomann, Ida; Behera, Sairam; Morley, Caoimhe; Scholz, Sonja W; Jaunmuktane, Zane; Demeulemeester, Jonas; Sedlazeck, Fritz J; Proukakis, Christos | bioRxiv : the preprint server for biology | 37609320 | 2023 Nov 21 |
| Single cell multiomic analysis reveals diabetes-associated β-cell heterogeneity driven by HNF1A. | Weng, Chen; Gu, Anniya; Zhang, Shanshan; Lu, Leina; Ke, Luxin; Gao, Peidong; Liu, Xiaoxiao; Wang, Yuntong; Hu, Peinan; Plummer, Dylan; MacDonald, Elise; Zhang, Saixian; Xi, Jiajia; Lai, Sisi; Leskov, Konstantin; Yuan, Kyle; Jin, Fulai; Li, Yan | Nature communications | 37669939 | 2023 Sep 05 |
| LINE-1 retrotransposition and its deregulation in cancers: implications for therapeutic opportunities. | Mendez-Dorantes, Carlos; Burns, Kathleen H | Genes & development | 38092519 | 2023 Dec 26 |
| Slide-tags enables single-nucleus barcoding for multimodal spatial genomics. | Russell, Andrew J C; Weir, Jackson A; Nadaf, Naeem M; Shabet, Matthew; Kumar, Vipin; Kambhampati, Sandeep; Raichur, Ruth; Marrero, Giovanni J; Liu, Sophia; Balderrama, Karol S; Vanderburg, Charles R; Shanmugam, Vignesh; Tian, Luyi; Iorgulescu, J Bryan; Yoon, Charles H; Wu, Catherine J; Macosko, Evan Z; Chen, Fei | Nature | 38093010 | 2024 Jan |
| Modbed track: Visualization of modified bases in single-molecule sequencing. | Li, Daofeng; Zhuo, Xiaoyu; Harrison, Jessica K; Liu, Shane; Wang, Ting | Cell genomics | 38116122 | 2023 Dec 13 |
| ATM-deficiency-induced microglial activation promotes neurodegeneration in ataxia-telangiectasia. | Lai, Jenny; Demirbas, Didem; Kim, Junho; Jeffries, Ailsa M; Tolles, Allie; Park, Junseok; Chittenden, Thomas W; Buckley, Patrick G; Yu, Timothy W; Lodato, Michael A; Lee, Eunjung Alice | Cell reports | 38159274 | 2024 Jan 23 |
| Subclonal Cancer Driver Mutations Are Prevalent in the Unresected Peritumoral Edema of Adult Diffuse Gliomas. | Underhill, Hunter R; Karsy, Michael; Davidson, Christian J; Hellwig, Sabine; Stevenson, Samuel; Goold, Eric A; Vincenti, Sydney; Sellers, Drew L; Dean, Charlie; Harrison, Brion E; Bronner, Mary P; Colman, Howard; Jensen, Randy L | Cancer research | 38270917 | 2024 Apr 01 |
| magpie: A power evaluation method for differential RNA methylation analysis in N6-methyladenosine sequencing. | Guo, Zhenxing; Duan, Daoyu; Tang, Wen; Zhu, Julia; Bush, William S; Zhang, Liangliang; Zhu, Xiaofeng; Jin, Fulai; Feng, Hao | PLoS computational biology | 38346081 | 2024 Feb |
| Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. | Gustafson, Jonas A; Gibson, Sophia B; Damaraju, Nikhita; Zalusky, Miranda Pg; Hoekzema, Kendra; Twesigomwe, David; Yang, Lei; Snead, Anthony A; Richmond, Phillip A; De Coster, Wouter; Olson, Nathan D; Guarracino, Andrea; Li, Qiuhui; Miller, Angela L; Goffena, Joy; Anderson, Zachery; Storz, Sophie Hr; Ward, Sydney A; Sinha, Maisha; Gonzaga-Jauregui, Claudia; Clarke, Wayne E; Basile, Anna O; Corvelo, André; Reeves, Catherine; Helland, Adrienne; Musunuri, Rajeeva Lochan; Revsine, Mahler; Patterson, Karynne E; Paschal, Cate R; Zakarian, Christina; Goodwin, Sara; Jensen, Tanner D; Robb, Esther; 1000 Genomes ONT Sequencing Consortium; University of Washington Center for Rare Disease Research (UW-CRDR); Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium; McCombie, W Richard; Sedlazeck, Fritz J; Zook, Justin M; Montgomery, Stephen B; Garrison, Erik; Kolmogorov, Mikhail; Schatz, Michael C; McLaughlin Jr, Richard N; Dashnow, Harriet; Zody, Michael C; Loose, Matt; Jain, Miten; Eichler, Evan E; Miller, Danny E | medRxiv : the preprint server for health sciences | 38496498 | 2024 Mar 07 |
| The benefit of a complete reference genome for cancer structural variant analysis. | Paulin, Luis F; Fan, Jeremy; O'Neill, Kieran; Pleasance, Erin; Porter, Vanessa L; Jones, Steven J M; Sedlazeck, Fritz J | medRxiv : the preprint server for health sciences | 38562786 | 2024 Mar 18 |
