Big Data to Knowledge (1160)
Publication TitleAuthorsJournalPublication DatePage NoPubMedID
Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities.Zitnik, Marinka; Nguyen, Francis; Wang, Bo; Leskovec, Jure; Goldenberg, Anna; Hoffman, Michael MAn international journal on information fusion.2019 Oct;30467459
Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder.Athreya, Arjun; Iyer, Ravishankar; Neavin, Drew; Wang, Liewei; Weinshilboum, Richard; Kaddurah-Daouk, Rima; Rush, John; Frye, Mark; Bobo, WilliamIEEE computational intelligence magazine.2018 Aug;30467458
EDGE EXCHANGEABLE MODELS FOR INTERACTION NETWORKS.Crane, Harry; Dempsey, WalterJournal of the American Statistical Association.2018;30467447
Assessing Time-Varying Causal Effect Moderation in Mobile Health.Boruvka, Audrey; Almirall, Daniel; Witkiewitz, Katie; Murphy, Susan AJournal of the American Statistical Association.2018;30467446
Repurposing Citizen Science Games as Software Tools for Professional Scientists.Cooper, Seth; Sterling, Amy L R; Kleffner, Robert; Silversmith, William M; Siegel, Justin BFDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games.2018 Aug;30465045
Learning Time Series Detection Models from Temporally Imprecise Labels.Adams, Roy J; Marlin, Benjamin MProceedings of machine learning research.2017 Apr;30465043
Yum-Me: A Personalized Nutrient-Based Meal Recommender System.Yang, Longqi; Hsieh, Cheng-Kang; Yang, Hongjian; Pollak, John P; Dell, Nicola; Belongie, Serge; Cole, Curtis; Estrin, DeborahACM transactions on information systems.2017 Aug;30464375
A reference set of curated biomedical data and metadata from clinical case reports.Caufield, J Harry; Zhou, Yijiang; Garlid, Anders O; Setty, Shaun P; Liem, David A; Cao, Quan; Lee, Jessica M; Murali, Sanjana; Spendlove, Sarah; Wang, Wei; Zhang, Li; Sun, Yizhou; Bui, Alex; Hermjakob, Henning; Watson, Karol E; Ping, PeipeiScientific data.2018 Nov 20;30457569
BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud.Torre, Denis; Lachmann, Alexander; Ma'ayan, AviCell systems.2018 Nov 08;30447998
Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease.Tu, Yanshuai; Wen, Chengfeng; Zhang, Wen; Wu, Jianfeng; Zhang, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Reiman, Eric M; Wang, YalinConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference.2018 Jul;30440425
Elevated allostatic load early in the course of schizophrenia.Savransky, Anya; Chiappelli, Joshua; Fisseha, Feven; Wisner, Krista M; Xiaoming, Du; Mirmomen, S Milad; Jones, Aaron D; Adhikari, Bhim M; Bruce, Heather A; Rowland, Laura M; Hong, L ElliotTranslational psychiatry.2018 Nov 12;30420620
A conceptual framework for clinicians working with artificial intelligence and health-assistive Smart Homes.Dermody, Gordana; Fritz, RoschelleNursing inquiry.2018 Nov 12;30417510
rConverse: Moment by Moment Conversation Detection Using a Mobile Respiration Sensor.Bari, Rummana; Adams, Roy J; Rahman, Mahbubur; Parsons, Megan Battles; Buder, Eugene H; Kumar, SantoshProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies.2018 Mar;30417165
Citizen Science for Mining the Biomedical Literature.Tsueng, Ginger; Nanis, Steven M; Fouquier, Jennifer; Good, Benjamin M; Su, Andrew ICitizen science : theory and practice.2016;30416754
Estimating the effect size of surgery to improve walking in children with cerebral palsy from retrospective observational clinical data.Rajagopal, Apoorva; Kidzi?ski, ?ukasz; McGlaughlin, Alec S; Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael HScientific reports.2018 Nov 05;30397268
Matrix metalloproteinase-12 as an endogenous resolution promoting factor following myocardial infarction.Mouton, Alan J; Rivera Gonzalez, Osvaldo J; Kaminski, Amanda R; Moore, Edwin T; Lindsey, Merry LPharmacological research.2018 Nov;30394317
Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms.Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, RoseStroke.2018 Sep;30354989
atSNPInfrastructure, a case study for searching billions of records while providing significant cost savings over cloud providers.IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum : [proceedings]. IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum.2018 May;30349760
Chromosome assembly of large and complex genomes using multiple references.Kolmogorov, Mikhail; Armstrong, Joel; Raney, Brian J; Streeter, Ian; Dunn, Matthew; Yang, Fengtang; Odom, Duncan; Flicek, Paul; Keane, Thomas M; Thybert, David; Paten, Benedict; Pham, SonGenome research.2018 11;30341161
Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments.Bacher, Rhonda; Leng, Ning; Chu, Li-Fang; Ni, Zijian; Thomson, James A; Kendziorski, Christina; Stewart, RonBMC bioinformatics.2018 Oct 16;30326833
Automated detection of outbreaks of antimicrobial-resistant bacteria in Japan.Tsutsui, A; Yahara, K; Clark, A; Fujimoto, K; Kawakami, S; Chikumi, H; Iguchi, M; Yagi, T; Baker, M A; O'Brien, T; Stelling, JThe Journal of hospital infection.2018 Oct 12;30321629
Logistic regression model training based on the approximate homomorphic encryption.Kim, Andrey; Song, Yongsoo; Kim, Miran; Lee, Keewoo; Cheon, Jung HeeBMC medical genomics.2018 Oct 11;30309349
Typing tumors using pathways selected by somatic evolution.Wang, Sheng; Ma, Jianzhu; Zhang, Wei; Shen, John Paul; Huang, Justin; Peng, Jian; Ideker, TreyNature communications.2018 Oct 08;30297789
A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts.Caufield, John Harry; Liem, David A; Garlid, Anders O; Zhou, Yijiang; Watson, Karol; Bui, Alex A T; Wang, Wei; Ping, PeipeiJournal of visualized experiments : JoVE.2018 Sep 20;30295669
Targeted sequencing identifies a missense variant in the BEST3 gene associated with antihypertensive response to hydrochlorothiazide.Singh, Sonal; Wang, Zhiying; Shahin, Mohamed H; Langaee, Taimour Y; Gong, Yan; Turner, Stephen T; Chapman, Arlene B; Gums, John G; McDonough, Caitrin W; Bailey, Kent R; Beitelshees, Amber L; Cooper-DeHoff, Rhonda M; Scherer, Steve; Boerwinkle, Eric; JohnsPharmacogenetics and genomics.2018 Nov;30289819
mCerebrum: A Mobile Sensing Software Platform for Development and Validation of Digital Biomarkers and Interventions.Hossain, Syed Monowar; Hnat, Timothy; Saleheen, Nazir; Nasrin, Nusrat Jahan; Noor, Joseph; Ho, Bo-Jhang; Condie, Tyson; Srivastava, Mani; Kumar, SantoshProceedings of the ... International Conference on Embedded Networked Sensor Systems. International Conference on Embedded Networked Sensor Systems.2017 Nov;30288504
Approximating Isotope Distributions of Biomolecule Fragments.Goldfarb, Dennis; Lafferty, Michael J; Herring, Laura E; Wang, Wei; Major, Michael BACS omega.2018 Sep 30;30288463
Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities.Halilaj, Eni; Rajagopal, Apoorva; Fiterau, Madalina; Hicks, Jennifer L; Hastie, Trevor J; Delp, Scott LJournal of biomechanics.2018 Sep 13;30279002
Randomization-Based Statistical Inference: A Resampling and Simulation Infrastructure.Dinov, Ivo D; Palanimalai, Selvam; Khare, Ashwini; Christou, NicolasTeaching statistics.2018;30270947
Structure and Protein Interaction-based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17.Zhang, Chengxin; Wei, Xiaoqiong; Omenn, Gilbert S; Zhang, YangJournal of proteome research.2018 Sep 28;30265558
Genetic risk for schizophrenia and autism, social impairment and developmental pathways to psychosis.Velthorst, Eva; Froudist-Walsh, Sean; Stahl, Eli; Ruderfer, Douglas; Ivanov, Ilyan; Buxbaum, Joseph; iPSYCH-Broad ASD Group, the IMAGEN consortiumTranslational psychiatry.2018 Sep 26;30258131
Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data.Köksal, Ali Sinan; Beck, Kirsten; Cronin, Dylan R; McKenna, Aaron; Camp, Nathan D; Srivastava, Saurabh; MacGilvray, Matthew E; Bodík, Rastislav; Wolf-Yadlin, Alejandro; Fraenkel, Ernest; Fisher, Jasmin; Gitter, AnthonyCell reports.2018 Sep 25;30257219
Smaller hippocampal CA1 subfield volume in posttraumatic stress disorder.Chen, Lyon W; Sun, Delin; Davis, Sarah L; Haswell, Courtney C; Dennis, Emily L; Swanson, Chelsea A; Whelan, Christopher D; Gutman, Boris; Jahanshad, Neda; Iglesias, Juan Eugenio; Thompson, Paul; Mid-Atlantic MIRECC Workgroup; Wagner, H Ryan; Saemann, PhilDepression and anxiety.2018 Nov;30256497
Extracellular Matrix in Cardiovascular Pathophysiology.Bloksgaard, Maria; Lindsey, Merry L; Martinez-Lemus, Luis AAmerican journal of physiology. Heart and circulatory physiology.2018 Sep 21;30239231
Symptom dimensions in obsessive-compulsive disorder as predictors of neurobiology and treatment response.Thorsen, Anders Lillevik; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile ACurrent treatment options in psychiatry.2018 Mar;30237966
AspEm: Embedding Learning by Aspects in Heterogeneous Information Networks.Shi, Yu; Gui, Huan; Zhu, Qi; Kaplan, Lance; Han, JiaweiProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2018;30221081
PReP: Path-Based Relevance from a Probabilistic Perspective in Heterogeneous Information Networks.Shi, Yu; Chan, Po-Wei; Zhuang, Honglei; Gui, Huan; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2017 Aug;30221026
3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification.Kalinin, Alexandr A; Allyn-Feuer, Ari; Ade, Alex; Fon, Gordon-Victor; Meixner, Walter; Dilworth, David; Husain, Syed S; de Wett, Jeffrey R; Higgins, Gerald A; Zheng, Gen; Creekmore, Amy; Wiley, John W; Verdone, James E; Veltri, Robert W; Pienta, Kenneth J; Coffey, Donald S; Athey, Brian D; Dinov, Ivo DScientific reports.;30209281
A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways.Lu, Songjian; Fan, Xiaonan; Chen, Lujia; Lu, XinghuaPloS one.2018;30208101
SequencEnG: an Interactive Knowledge Base of Sequencing Techniques.Zhang, Yi; Manjunath, Mohith; Kim, Yeonsung; Heintz, Joerg; Song, Jun SBioinformatics (Oxford, England).2018 Sep 08;30202870
Collaborative Problem Solving in an Open-Ended Scientific Discovery Game.Bauer, Aaron; Popovi?, ZoranProceedings of the ACM on human-computer interaction.2017 Nov;30198019
Motor neuron loss and neuroinflammation in a model of ?-synuclein-induced neurodegeneration.Sorrentino, Zachary A; Xia, Yuxing; Funk, Cory; Riffe, Cara J; Rutherford, Nicola J; Ceballos Diaz, Carolina; Sacino, Amanda N; Price, Nathan D; Golde, Todd E; Giasson, Benoit I; Chakrabarty, ParamitaNeurobiology of disease.2018 Dec;30195075
The ventromedial prefrontal cortex: a putative locus for trait inattention.Albaugh, Matthew D; Potter, Alexandra SNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.2019 Jan;30194422
Efficacy of Contextually Tailored Suggestions for Physical Activity: A Micro-randomized Optimization Trial of HeartSteps.Klasnja, Predrag; Smith, Shawna; Seewald, Nicholas J; Lee, Andy; Hall, Kelly; Luers, Brook; Hekler, Eric B; Murphy, Susan AAnnals of behavioral medicine : a publication of the Society of Behavioral Medicine.2018 Sep 05;30192907
Mixed Graphical Models for Integrative Causal Analysis with Application to Chronic Lung Disease Diagnosis and Prognosis.Sedgewick, Andrew J; Buschur, Kristina; Shi, Ivy; Ramsey, Joseph D; Raghu, Vineet K; Manatakis, Dimitris V; Zhang, Yingze; Bon, Jessica; Chandra, Divay; Karoleski, Chad; Sciurba, Frank C; Spirtes, Peter; Glymour, Clark; Benos, Panayiotis VBioinformatics (Oxford, England).2018 Sep 05;30192904
A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol.Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Turner, Jessica; Grotegerd, Dominik; Dannlowski, Udo; Kugel, Harald; Engelen, Jennifer; Dietsche, Bruno; Krug, Axel; Kircher, Tilo; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Boedhoe, Premika S W; van der Werf, Ysbrand D; van den Heuvel, Odile A; Ipser, Jonathan; Uhlmann, Anne; Stein, Dan J; Dickie, Erin; Voineskos, Aristotle N; Malhotra, Anil K; Pizzagalli, Fabrizio; Calhoun, Vince D; Waller, Lea; Veer, Ilja M; Walter, Hernik; Buchanan, Robert W; Glahn, David C; Hong, L Elliot; Thompson, Paul M; Kochunov, PeterBrain imaging and behavior.;30191514
Generalized Score Functions for Causal Discovery.Huang, Biwei; Zhang, Kun; Lin, Yizhu; Schölkopf, Bernhard; Glymour, ClarkKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2018 Aug;30191079
Exogenous CXCL4 Infusion Inhibits Macrophage Phagocytosis by Limiting CD36 Signaling to Enhance Post-myocardial Infarction Cardiac Dilation and Mortality.Lindsey, Merry L; Jung, Mira; Yabluchanskiy, Andriy; Cannon, Presley L; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; DeLeon-Pennell, Kristine Y; Valerio, Fritz M; Harrison, Courtney L; Ripplinger, Crystal M; Hall, Michael E; Ma, YonggangCardiovascular research.2018 Aug 29;30169632
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.Bukhari, Syed Ahmad Chan; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Rubelt, Florian; Cheung, Kei-Hoi; Kleinstein, Steven HFrontiers in immunology.2018;30166985
Controlled feature selection and compressive big data analytics: Applications to biomedical and health studies.Marino, Simeone; Xu, Jiachen; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Dinov, Ivo DPloS one.2018;30161148
Extracellular matrix roles in cardiorenal fibrosis: Potential therapeutic targets for CVD and CKD in the elderly.Toba, Hiroe; Lindsey, Merry LPharmacology & therapeutics.2018 Aug 25;30149103
Comparison of strategies for scalable causal discovery of latent variable models from mixed data.Raghu, Vineet K; Ramsey, Joseph D; Morris, Alison; Manatakis, Dimitrios V; Sprites, Peter; Chrysanthis, Panos K; Glymour, Clark; Benos, Panayiotis VInternational journal of data science and analytics.2018;30148202
HiGlass: web-based visual exploration and analysis of genome interaction maps.Kerpedjiev, Peter; Abdennur, Nezar; Lekschas, Fritz; McCallum, Chuck; Dinkla, Kasper; Strobelt, Hendrik; Luber, Jacob M; Ouellette, Scott B; Azhir, Alaleh; Kumar, Nikhil; Hwang, Jeewon; Lee, Soohyun; Alver, Burak H; Pfister, Hanspeter; Mirny, Leonid A; PaGenome biology.2018 08 24;30143029
Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy.Journal of proteome research.2018 Aug 31;30141336
Scoring Bayesian Networks of Mixed Variables.Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory FInternational journal of data science and analytics.2018 Aug;30140730
EarBit: Using Wearable Sensors to Detect Eating Episodes in Unconstrained Environments.Bedri, Abdelkareem; Li, Richard; Haynes, Malcolm; Kosaraju, Raj Prateek; Grover, Ishaan; Prioleau, Temiloluwa; Beh, Min Yan; Goel, Mayank; Starner, Thad; Abowd, GregoryProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies.2017 Sep;30135957
LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling.DeLeon-Pennell, Kristine Y; Mouton, Alan J; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry LBasic research in cardiology.2018 08 21;30132266
Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative.Halilaj, E; Le, Y; Hicks, J L; Hastie, T J; Delp, S LOsteoarthritis and cartilage.;30130590
Variation graph toolkit improves read mapping by representing genetic variation in the reference.Garrison, Erik; Sirén, Jouni; Novak, Adam M; Hickey, Glenn; Eizenga, Jordan M; Dawson, Eric T; Jones, William; Garg, Shilpa; Markello, Charles; Lin, Michael F; Paten, Benedict; Durbin, RichardNature biotechnology.2018 Oct;30125266
HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS.Wu, Jianfeng; Zhang, Jie; Shi, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2018 Apr;30123414
COMT Val158Met Polymorphism and Social Impairment Interactively Affect Attention-Deficit Hyperactivity Symptoms in Healthy Adolescents.Millenet, Sabina K; Nees, Frauke; Heintz, Stefan; Bach, Christiane; Frank, Josef; Vollstädt-Klein, Sabine; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Fröhner, Juliane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaire, Herve; Martinot, Jean-Luc; Martinot, Marie-Laure P; Papadoulos, Dimitri O; Paus, Tomá?; Poustka, Luise; Rietschel, Marcella; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Banaschewski, Tobias; Hohmann, SarahFrontiers in genetics.;30108607
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.Carass, Aaron; Cuzzocreo, Jennifer L; Han, Shuo; Hernandez-Castillo, Carlos R; Rasser, Paul E; Ganz, Melanie; Beliveau, Vincent; Dolz, Jose; Ben Ayed, Ismail; Desrosiers, Christian; Thyreau, Benjamin; Romero, José E; Coupé, Pierrick; Manjón, José V; FonovNeuroImage.2018 Dec;30099076
Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals.Meyer, Wynn K; Jamison, Jerrica; Richter, Rebecca; Woods, Stacy E; Partha, Raghavendran; Kowalczyk, Amanda; Kronk, Charles; Chikina, Maria; Bonde, Robert K; Crocker, Daniel E; Gaspard, Joseph; Lanyon, Janet M; Marsillach, Judit; Furlong, Clement E; Clark, Nathan LScience (New York, N.Y.).2018 08 10;30093596
Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline.Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Fox, Peter T; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, PeterHuman brain mapping.2018 Dec;30052318
Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling.Kim, Hosung; Caldairou, Benoit; Bernasconi, Andrea; Bernasconi, NedaFrontiers in neuroinformatics.2018;30050423
Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging.Petrov, Dmitry; Gutman, Boris A; Yu, Shih-Hua Julie; van Erp, Theo G M; Turner, Jessica A; Schmaal, Lianne; Veltman, Dick; Wang, Lei; Alpert, Kathryn; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Ching, Christopher R K; Calhoun, Vince; Glahn, David; Satterthwaite, Theodore D; Andreasen, Ole Andreas; Borgwardt, Stefan; Howells, Fleur; Groenewold, Nynke; Voineskos, Aristotle; Radua, Joaquim; Potkin, Steven G; Crespo-Facorro, Benedicto; Tordesillas-Gutiérrez, Diana; Shen, Li; Lebedeva, Irina; Spalletta, Gianfranco; Donohoe, Gary; Kochunov, Peter; Rosa, Pedro G P; James, Anthony; Dannlowski, Udo; Baune, Bernhard T; Aleman, André; Gotlib, Ian H; Walter, Henrik; Walter, Martin; Soares, Jair C; Ehrlich, Stefan; Gur, Ruben C; Doan, N Trung; Agartz, Ingrid; Westlye, Lars T; Harrisberger, Fabienne; Riecher-Rössler, Anita; Uhlmann, Anne; Stein, Dan J; Dickie, Erin W; Pomarol-Clotet, Edith; Fuentes-Claramonte, Paola; Canales-Rodríguez, Erick Jorge; Salvador, Raymond; Huang, Alexander J; Roiz-Santiañez, Roberto; Cong, Shan; Tomyshev, Alexander; Piras, Fabrizio; Vecchio, Daniela; Banaj, Nerisa; Ciullo, Valentina; Hong, Elliot; Busatto, Geraldo; Zanetti, Marcus V; Serpa, Mauricio H; Cervenka, Simon; Kelly, Sinead; Grotegerd, Dominik; Sacchet, Matthew D; Veer, Ilya M; Li, Meng; Wu, Mon-Ju; Irungu, Benson; Walton, Esther; Thompson, Paul MMachine learning in medical imaging. MLMI (Workshop).2017 Sep;30035274
Learning causality and causality-related learning: some recent progress.Zhang, Kun; Schölkopf, Bernhard; Spirtes, Peter; Glymour, ClarkNational science review.2018 Jan;30034911
ENIGMA MILITARY BRAIN INJURY: A COORDINATED META-ANALYSIS OF DIFFUSION MRI FROM MULTIPLE COHORTS.Dennis, Emily L; Wilde, Elisabeth A; Newsome, Mary R; Scheibel, Randall S; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin S C; Drennon, Ann Marie; York, Gerald E; Bigler, Erin D; Abildskov, Tracy J; Taylor, Brian A; Jaramillo, Carlos A; Eapen, Blessen; Belanger, Heather; Gupta, Vikash; Morey, Rajendra; Haswell, Courtney; Levin, Harvey S; Hinds 2nd, Sidney R; Walker, William C; Thompson, Paul M; Tate, David FProceedings. IEEE International Symposium on Biomedical Imaging.2018 Apr;30034577
Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata.Jang, MiHyun; Patted, Tejal; Gil, Yolanda; Garijo, Daniel; Ratnakar, Varun; Ji, Jie; Wang, Prince; McMahon, Aggie; Thompson, Paul M; Jahanshad, NedaCEUR workshop proceedings.2017 Oct;30034319
Selecting Optimal Subset to release under Differentially Private M-estimators from Hybrid Datasets.Wang, Meng; Ji, Zhanglong; Kim, Hyeon-Eui; Wang, Shuang; Xiong, Li; Jiang, XiaoqianIEEE transactions on knowledge and data engineering.2018 Mar 01;30034201
Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans.Shiroishi, Mark S; Gupta, Vikash; Bigjahan, Bavrina; Cen, Steven Y; Rashid, Faisal; Hwang, Darryl H; Lerner, Alexander; Boyko, Orest B; Liu, Chia-Shang Jason; Law, Meng; Thompson, Paul M; Jahanshad, NedaProceedings of SPIE--the International Society for Optical Engineering.2017 Oct;30034079
Statistical considerations in reporting cardiovascular research.Lindsey, Merry L; Gray, Gillian A; Wood, Susan K; Curran-Everett, DouglasAmerican journal of physiology. Heart and circulatory physiology.2018 Aug 01;30028200
MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES.Zhang, Jie; Tu, Yanshuai; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2018 Apr;30023040
Comparison of privacy-protecting analytic and data-sharing methods: A simulation study.Yoshida, Kazuki; Gruber, Susan; Fireman, Bruce H; Toh, SengweePharmacoepidemiology and drug safety.2018 Sep;30022561
Toward Increasing Engagement in Substance Use Data Collection: Development of the Substance Abuse Research Assistant App and Protocol for a Microrandomized Trial Using Adolescents and Emerging Adults.Rabbi, Mashfiqui; Philyaw Kotov, Meredith; Cunningham, Rebecca; Bonar, Erin E; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, SusanJMIR research protocols.2018 Jul 18;30021714
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.Baheti, Saurabh; Tang, Xiaojia; O'Brien, Daniel R; Chia, Nicholas; Roberts, Lewis R; Nelson, Heidi; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Kocher, Jean-Pierre A; Kalari, Krishna RBMC bioinformatics.2018 Jul 17;30016933
Neural correlates of cognitive function and symptoms in attention-deficit/hyperactivity disorder in adults.Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Lin, Dongdong; Jiang, Wenhao; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, JingyuNeuroImage. Clinical.2018;30013920
A synthetic-diploid benchmark for accurate variant-calling evaluation.Li, Heng; Bloom, Jonathan M; Farjoun, Yossi; Fleharty, Mark; Gauthier, Laura; Neale, Benjamin; MacArthur, DanielNature methods.2018 Aug;30013044
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata.Bukhari, Syed Ahmad Chan; Martínez-Romero, Marcos; O' Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Cheung, Kei-Hoi; Kleinstein, Steven HBMC bioinformatics.2018 Jul 16;30012108
Quantitative temporal analysis of protein dynamics in cardiac remodeling.McClatchy, Daniel B; Ma, Yuanhui; Liem, David A; Ng, Dominic C M; Ping, Peipei; Yates 3rd, John RJournal of molecular and cellular cardiology.2018 Aug;30009778
A Screening Rule for ?1-Regularized Ising Model Estimation.Kuang, Zhaobin; Geng, Sinong; Page, DavidAdvances in neural information processing systems.2017 Dec;29983538
Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge.Saul, Michael C; Blatti, Charles; Yang, Wei; Bukhari, Syed A; Shpigler, Hagai Y; Troy, Joseph M; Seward, Christopher H; Sloofman, Laura; Chandrasekaran, Sriram; Bell, Alison M; Stubbs, Lisa; Robinson, Gene E; Zhao, Sihai D; Sinha, SaurabhGenes, brain, and behavior.2018 Jul 02;29968347
Cortical Brain Abnormalities in 4474 Individuals With Schizophrenia and 5098 Control Subjects via the Enhancing Neuro Imaging Genetics Through Meta Analysis (ENIGMA) Consortium.van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Bustillo, Juan R; Clark, Vincent P; Agartz, Ingrid; Mueller, Bryon A; Cahn, Wiepke; de Zwarte, Sonja M C; Hulshoff Pol, Hilleke E; Kahn, René S; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Dale, Anders M; Doan, Nhat Trung; Gurholt, Tiril P; Hartberg, Cecilie B; Haukvik, Unn K; Jørgensen, Kjetil N; Lagerberg, Trine V; Melle, Ingrid; Westlye, Lars T; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Zilles, David; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Carr, Vaughan J; Catts, Stanley; Cropley, Vanessa L; Fullerton, Janice M; Green, Melissa J; Henskens, Frans A; Jablensky, Assen; Lenroot, Rhoshel K; Mowry, Bryan J; Michie, Patricia T; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Morris, Derek W; Hong, Elliot; Kochunov, Peter; Beard, Lauren M; Gur, Raquel E; Gur, Ruben C; Satterthwaite, Theodore D; Wolf, Daniel H; Belger, Aysenil; Brown, Gregory G; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; O'Leary, Daniel S; Potkin, Steven G; Preda, Adrian; Voyvodic, James; Lim, Kelvin O; McEwen, Sarah; Yang, Fude; Tan, Yunlong; Tan, Shuping; Wang, Zhiren; Fan, Fengmei; Chen, Jingxu; Xiang, Hong; Tang, Shiyou; Guo, Hua; Wan, Ping; Wei, Dong; Bockholt, Henry J; Ehrlich, Stefan; Wolthusen, Rick P F; King, Margaret D; Shoemaker, Jody M; Sponheim, Scott R; De Haan, Lieuwe; Koenders, Laura; Machielsen, Marise W; van Amelsvoort, Therese; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; McKenna, Peter J; Pomarol-Clotet, Edith; Salvador, Raymond; Corvin, Aiden; Donohoe, Gary; Kelly, Sinead; Whelan, Christopher D; Dickie, Erin W; Rotenberg, David; Voineskos, Aristotle N; Ciufolini, Simone; Radua, Joaquim; Dazzan, Paola; Murray, Robin; Reis Marques, Tiago; Simmons, Andrew; Borgwardt, Stefan; Egloff, Laura; Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Wang, Lei; Jönsson, Erik G; Koops, Sanne; Sommer, Iris E C; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Stephen, Julia M; Kwon, Jun Soo; Yun, Je-Yeon; Cannon, Dara M; McDonald, Colm; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Busatto, Geraldo F; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; Hagenaars, Saskia P; McIntosh, Andrew M; Whalley, Heather C; Lawrie, Stephen M; Knöchel, Christian; Oertel-Knöchel, Viola; Stäblein, Michael; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; McMahon, Agnes; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica ABiological psychiatry.2018 May 14;29960671
SigMat: a classification scheme for gene signature matching.Xiao, Jinfeng; Blatti, Charles; Sinha, SaurabhBioinformatics (Oxford, England).2018 Jul 01;29950002
Significant concordance of genetic variation that increases both the risk for obsessive-compulsive disorder and the volumes of the nucleus accumbens and putamen.Hibar, Derrek P; Cheung, Joshua W; Medland, Sarah E; Mufford, Mary S; Jahanshad, Neda; Dalvie, Shareefa; Ramesar, Raj; Stewart, Evelyn; van den Heuvel, Odile A; Pauls, David L; Knowles, James A; Stein, Dan J; Thompson, Paul M; Enhancing Neuro Imaging Genetics through Meta Analysis (ENIGMA) Consortium and International Obsessive Compulsive Disorder Foundation Genetics Collaborative (IOCDF-GC)The British journal of psychiatry : the journal of mental science.2018 Jul;29947313
Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.Smit, Dirk J A; Wright, Margaret J; Meyers, Jacquelyn L; Martin, Nicholas G; Ho, Yvonne Y W; Malone, Stephen M; Zhang, Jian; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Denys, Damiaan; Hansell, Narelle K; Hottenga, Jouke-Jan; McGue, Matt; van Beijsterveldt, Catharina E M; Jahanshad, Neda; Thompson, Paul M; Whelan, Christopher D; Medland, Sarah E; Porjesz, Bernice; Lacono, William G; Boomsma, Dorret IHuman brain mapping.2018 Jun 26;29947131
A design framework and exemplar metrics for FAIRness.Wilkinson, Mark D; Sansone, Susanna-Assunta; Schultes, Erik; Doorn, Peter; Bonino da Silva Santos, Luiz Olavo; Dumontier, MichelScientific data.2018 06 26;29944145
Fonduer: Knowledge Base Construction from Richly Formatted Data.Proceedings. ACM-Sigmod International Conference on Management of Data.2018 Jun;29937618
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.Stathias, Vasileios; Koleti, Amar; Vidovi?, Du?ica; Cooper, Daniel J; Jagodnik, Kathleen M; Terryn, Raymond; Forlin, Michele; Chung, Caty; Torre, Denis; Ayad, Nagi; Medvedovic, Mario; Ma'ayan, Avi; Pillai, Ajay; Schürer, Stephan CScientific data.2018 Jun 19;29917015
Reg-ulating macrophage infiltration to alter wound healing following myocardial infarction.Lindsey, Merry LCardiovascular research.2018 Oct 01;29912288
A Hierarchical Framework for State-Space Matrix Inference and Clustering.Zuo, Chandler; Chen, Kailei; Hewitt, Kyle J; Bresnick, Emery H; Kele?, SündüzThe annals of applied statistics.2016 Sep;29910842
Causal Discovery from Temporally Aggregated Time Series.Gong, Mingming; Zhang, Kun; Schölkopf, Bernhard; Glymour, Clark; Tao, DachengUncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence.2017 Aug;29899680
Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation.Hanson, Casey; Cairns, Junmei; Wang, Liewei; Sinha, SaurabhGenome research.2018 08;29898900
Large-scale mapping of cortical alterations in 22q11.2 deletion syndrome: Convergence with idiopathic psychosis and effects of deletion size.Sun, Daqiang; Ching, Christopher R K; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Villalon-Reina, Julio E; Qu, Xiaoping; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Vorstman, Jacob; Fiksinski, Ania; Koops, Sanne; Ruparel, Kosha; Roalf, David R; Gur, Raquel E; Schmitt, J Eric; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Bassett, Anne S; Chow, Eva W C; Butcher, Nancy J; Vila-Rodriguez, Fidel; Doherty, Joanne; Cunningham, Adam; van den Bree, Marianne B M; Linden, David E J; Moss, Hayley; Owen, Michael J; Murphy, Kieran C; McDonald-McGinn, Donna M; Emanuel, Beverly; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Bearden, Carrie EMolecular psychiatry.2018 Jun 13;29895892
Network-based approaches to examining stress in the adolescent brain.Ho, Tiffany C; Dennis, Emily L; Thompson, Paul M; Gotlib, Ian HNeurobiology of stress.2018 Feb;29888310
Utility of Genetic Testing in Addition to Mammography for Determining Risk of Breast Cancer Depends on Patient Age.Feld, Shara I; Fan, Jun; Yuan, Ming; Wu, Yirong; Woo, Kaitlin M; Alexandridis, Roxana; Burnside, Elizabeth SAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888046
Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data.Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Liu, Sijia; Liu, Hongfang; Jiang, GuoqianAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888045
Real-time Protection of Genomic Data Sharing in Beacon Services.Bu, Diyue; Wang, Xiaofeng; Tang, HaixuAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888039
What's in a Note? Unpacking Predictive Value in Clinical Note Representations.Boag, Willie; Doss, Dustin; Naumann, Tristan; Szolovits, PeterAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888035
Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation.Fiddes, Ian T; Armstrong, Joel; Diekhans, Mark; Nachtweide, Stefanie; Kronenberg, Zev N; Underwood, Jason G; Gordon, David; Earl, Dent; Keane, Thomas; Eichler, Evan E; Haussler, David; Stanke, Mario; Paten, BenedictGenome research.;29884752
Multiple Testing of Submatrices of a Precision Matrix with Applications to Identification of Between Pathway Interactions.Xia, Yin; Cai, Tianxi; Cai, T TonyJournal of the American Statistical Association.;29881130
High-resolution comparative analysis of great ape genomes.Kronenberg, Zev N; Fiddes, Ian T; Gordon, David; Murali, Shwetha; Cantsilieris, Stuart; Meyerson, Olivia S; Underwood, Jason G; Nelson, Bradley J; Chaisson, Mark J P; Dougherty, Max L; Munson, Katherine M; Hastie, Alex R; Diekhans, Mark; Hormozdiari, FereScience (New York, N.Y.).;29880660
Predicting Adverse Drug Effects from Literature- and Database-Mined Assertions.La, Mary K; Sedykh, Alexander; Fourches, Denis; Muratov, Eugene; Tropsha, AlexanderDrug safety.2018 Jun 06;29876834
Data Programming: Creating Large Training Sets, Quickly.Ratner, Alexander; De Sa, Christopher; Wu, Sen; Selsam, Daniel; Ré, ChristopherAdvances in neural information processing systems.2016 Dec;29872252
Mapping macrophage polarization over the myocardial infarction time continuum.Mouton, Alan J; DeLeon-Pennell, Kristine Y; Rivera Gonzalez, Osvaldo J; Flynn, Elizabeth R; Freeman, Tom C; Saucerman, Jeffrey J; Garrett, Michael R; Ma, Yonggang; Harmancey, Romain; Lindsey, Merry LBasic research in cardiology.2018 Jun 04;29868933
Acute changes in foot strike pattern and cadence affect running parameters associated with tibial stress fractures.Yong, Jennifer R; Silder, Amy; Montgomery, Kate L; Fredericson, Michael; Delp, Scott LJournal of biomechanics.2018 Jul 25;29866518
The Added Value of Diffusion-Weighted MRI-Derived Structural Connectome in Evaluating Mild Cognitive Impairment: A Multi-Cohort Validation1.Wang, Qi; Guo, Lei; Thompson, Paul M; Jack, Clifford R; Dodge, Hiroko; Zhan, Liang; Zhou, Jiayu; Alzheimer?s Disease Neuroimaging Initiative and National Alzheimer?s Coordinating CenterJournal of Alzheimer's disease : JAD.2018;29865049
Big data sharing and analysis to advance research in post-traumatic epilepsy.Duncan, Dominique; Vespa, Paul; Pitkänen, Asla; Braimah, Adebayo; Lapinlampi, Niina; Toga, Arthur WNeurobiology of disease.2018 Jun 01;29864492
Quantifying the Impact of Rare and Ultra-rare Coding Variation across the Phenotypic Spectrum.Ganna, Andrea; Satterstrom, F Kyle; Zekavat, Seyedeh M; Das, Indraniel; Kurki, Mitja I; Churchhouse, Claire; Alfoldi, Jessica; Martin, Alicia R; Havulinna, Aki S; Byrnes, Andrea; Thompson, Wesley K; Nielsen, Philip R; Karczewski, Konrad J; Saarentaus, ElmAmerican journal of human genetics.2018 Jun 07;29861106
Association between inflammation and systolic blood pressure in RA compared to patients without RA.Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine PArthritis research & therapy.2018 Jun 01;29855349
A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis.Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, LucilaAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854240
Mining Hierarchies and Similarity Clusters from Value Set Repositories.Peterson, Kevin J; Jiang, Guoqian; Brue, Scott M; Shen, Feichen; Liu, HongfangAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854206
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations.Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark AAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854196
Framing Electronic Medical Records as Polylingual Documents in Query Expansion.Huang, Edward W; Wang, Sheng; Lee, Doris Jung-Lin; Zhang, Runshun; Liu, Baoyan; Zhou, Xuezhong; Zhai, ChengXiangAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854161
Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms.Can, Anil; Rudy, Robert F; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, RoseStroke.2018 Jul;29844027
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.Clarke, Daniel J B; Kuleshov, Maxim V; Schilder, Brian M; Torre, Denis; Duffy, Mary E; Keenan, Alexandra B; Lachmann, Alexander; Feldmann, Axel S; Gundersen, Gregory W; Silverstein, Moshe C; Wang, Zichen; Ma'ayan, AviNucleic acids research.2018 Jul 02;29800326
Progress Toward Cancer Data Ecosystems.Grossman, Robert LCancer journal (Sudbury, Mass.).2018 May/Jun;29794537
Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews.Cheng Ye, M S; Fabbri, DanielJournal of biomedical informatics.;29793071
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE).Lill, Jennie R; van Veelen, Peter A; Tenzer, Stefan; Admon, Arie; Caron, Etienne; Elias, Joshua E; Heck, Albert J R; Marcilla, Miguel; Marino, Fabio; Müller, Markus; Peters, Bjoern; Purcell, Anthony; Sette, Alessandro; Sturm, Theo; Ternette, Nicola; VizcaProteomics.2018 Jun;29791771
Stressful Life Events, ADHD Symptoms, and Brain Structure in Early Adolescence.Humphreys, Kathryn L; Watts, Emily L; Dennis, Emily L; King, Lucy S; Thompson, Paul M; Gotlib, Ian HJournal of abnormal child psychology.2018 May 21;29785533
Classifying Alzheimer's disease with brain imaging and genetic data using a neural network framework.Ning, Kaida; Chen, Bo; Sun, Fengzhu; Hobel, Zachary; Zhao, Lu; Matloff, Will; Alzheimer's Disease Neuroimaging Initiative; Toga, Arthur WNeurobiology of aging.2018 Aug;29784544
I'll Be Back: On the Multiple Lives of Users of a Mobile Activity Tracking Application.Lin, Zhiyuan; Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2018 Apr;29780978
Modeling Interdependent and Periodic Real-World Action Sequences.Kurashima, Takeshi; Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2018 Apr;29780977
Modeling Individual Cyclic Variation in Human Behavior.Pierson, Emma; Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2018 Apr;29780976
The Selective Labels Problem: Evaluating Algorithmic Predictions in the Presence of Unobservables.Lakkaraju, Himabindu; Kleinberg, Jon; Leskovec, Jure; Ludwig, Jens; Mullainathan, SendhilKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2017 Aug;29780658
Development of an Algorithm to Identify Patients with Physician-Documented Insomnia.Kartoun, Uri; Aggarwal, Rahul; Beam, Andrew L; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Kohane, Isaac S; Shaw, Stanley YScientific reports.2018 May 18;29777125
Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.Liem, David A; Murali, Sanjana; Sigdel, Dibakar; Shi, Yu; Wang, Xuan; Shen, Jiaming; Choi, Howard; Caufield, John H; Wang, Wei; Ping, Peipei; Han, JiaWeiAmerican journal of physiology. Heart and circulatory physiology.2018 Oct 01;29775406
The Mouse Heart Attack Research Tool 1.0 database.DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ma, Yonggang; Yabluchanskiy, Andriy; Zamilpa, Rogelio; Chiao, Ying Ann; Cannon, Presley L; Kaplan, Abdullah; Cates, Courtney A; Flynn, Elizabeth R; Halade, Ganesh V; de Castro Brás, Lisandra E; LindseAmerican journal of physiology. Heart and circulatory physiology.2018 Sep 01;29775405
Local Higher-Order Graph Clustering.Yin, Hao; Benson, Austin R; Leskovec, Jure; Gleich, David FKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.;29770258
Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data.Hallac, David; Vare, Sagar; Boyd, Stephen; Leskovec, JureKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.;29770257
Network Inference via the Time-Varying Graphical Lasso.Hallac, David; Park, Youngsuk; Boyd, Stephen; Leskovec, JureKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.;29770256
Snorkel: Rapid Training Data Creation with Weak Supervision.Ratner, Alexander; Bach, Stephen H; Ehrenberg, Henry; Fries, Jason; Wu, Sen; Ré, ChristopherProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.;29770249
Population-Scale Pervasive Health.Althoff, TimIEEE pervasive computing.;29770105
Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium.Kong, Xiang-Zhen; Mathias, Samuel R; Guadalupe, Tulio; ENIGMA Laterality Working Group; Glahn, David C; Franke, Barbara; Crivello, Fabrice; Tzourio-Mazoyer, Nathalie; Fisher, Simon E; Thompson, Paul M; Francks, ClydeProceedings of the National Academy of Sciences of the United States of America.;29764998
ERMrest: A Collaborative Data Catalog with Fine Grain Access Control.Czajkowski, Karl; Kesselman, Carl; Schuler, RobertProceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience.2017 Oct;29756002
Experiences with Deriva: An Asset Management Platform for Accelerating eScience.Bugacov, Alejandro; Czajkowski, Karl; Kesselman, Carl; Kumar, Anoop; Schuler, Robert E; Tangmunarunkit, HongsudaProceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience.2017 Oct;29756001
Pharmacovigilance via Baseline Regularization with Large-Scale Longitudinal Observational Data.Kuang, Zhaobin; Peissig, Peggy; Costa, Vítor Santos; Maclin, Richard; Page, DavidKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2017 Aug;29755826
A Constraint Optimization Approach to Causal Discovery from Subsampled Time Series Data.Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, DavidInternational journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society.2017 Nov;29755201
HUMAN DECISIONS AND MACHINE PREDICTIONS.Kleinberg, Jon; Lakkaraju, Himabindu; Leskovec, Jure; Ludwig, Jens; Mullainathan, SendhilThe quarterly journal of economics.2018 Feb 01;29755141
Assigning matrix metalloproteinase roles in ischaemic cardiac remodelling.Lindsey, Merry LNature reviews. Cardiology.2018 May 11;29752454
Magnetic resonance spectroscopy of fiber tracts in children with traumatic brain injury: A combined MRS - Diffusion MRI study.Dennis, Emily L; Babikian, Talin; Alger, Jeffry; Rashid, Faisal; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FHuman brain mapping.2018 May 10;29749094
Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.Mulugeta, Lealem; Drach, Andrew; Erdemir, Ahmet; Hunt, C A; Horner, Marc; Ku, Joy P; Myers Jr, Jerry G; Vadigepalli, Rajanikanth; Lytton, William WFrontiers in neuroinformatics.2018;29713272
Biases in electronic health record data due to processes within the healthcare system: retrospective observational study.Agniel, Denis; Kohane, Isaac S; Weber, Griffin MBMJ (Clinical research ed.).2018 04 30;29712648
Quantifying predictive capability of electronic health records for the most harmful breast cancer.Wu, Yirong; Fan, Jun; Peissig, Peggy; Berg, Richard; Tafti, Ahmad Pahlavan; Yin, Jie; Yuan, Ming; Page, David; Cox, Jennifer; Burnside, Elizabeth SProceedings of SPIE--the International Society for Optical Engineering.2018 Feb;29706685
A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models.Scientific reports.2018 Apr 26;29700343
Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine.Circulation research.2018 Apr 27;29700073
Testing associations between cannabis use and subcortical volumes in two large population-based samples.Gillespie, Nathan A; Neale, Michael C; Bates, Timothy C; Eyler, Lisa T; Fennema-Notestine, Christine; Vassileva, Jasmin; Lyons, Michael J; Prom-Wormley, Elizabeth C; McMahon, Katie L; Thompson, Paul M; de Zubicaray, Greig; Hickie, Ian B; McGrath, John J; Strike, Lachlan T; Rentería, Miguel E; Panizzon, Matthew S; Martin, Nicholas G; Franz, Carol E; Kremen, William S; Wright, Margaret JAddiction (Abingdon, England).2018 Apr 24;29691937
Micropublication: incentivizing community curation and placing unpublished data into the public domain.Raciti, Daniela; Yook, Karen; Harris, Todd W; Schedl, Tim; Sternberg, Paul WDatabase : the journal of biological databases and curation.2018 01 01;29688367
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.Vita, Randi; Overton, James A; Mungall, Christopher J; Sette, Alessandro; Peters, BjoernDatabase : the journal of biological databases and curation.2018 01 01;29688354
Multimodal Teaching Analytics: Automated Extraction of Orchestration Graphs from Wearable Sensor Data.Prieto, Luis P; Sharma, Kshitij; Kidzinski, ?ukasz; Rodríguez-Triana, María Jesús; Dillenbourg, PierreJournal of computer assisted learning.2018 Apr;29686446
SeleCon: Scalable IoT Device Selection and Control Using Hand Gestures.Alanwar, Amr; Alzantot, Moustafa; Ho, Bo-Jhang; Martin, Paul; Srivastava, ManiIoTDI 2017 : 2017 IEEE/ACM Second International Conference on Internet-of-Things Design and Implementation : proceedings : 18-20 April 2017, Pittsburgh, Pennsylvania, USA. IoTDI (Conference) (2nd : 2017 : Pittsburgh, Pa.).2017 Apr;29683151
Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation.Kim, Miran; Song, Yongsoo; Wang, Shuang; Xia, Yuhou; Jiang, XiaoqianJMIR medical informatics.2018 Apr 17;29666041
Individual differences in stop-related activity are inflated by the adaptive algorithm in the stop signal task.D'Alberto, Nicholas; Chaarani, Bader; Orr, Catherine A; Spechler, Philip A; Albaugh, Matthew D; Allgaier, Nicholas; Wonnell, Alexander; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Itterman, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Robbins, Trevor W; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, HughHuman brain mapping.2018 Apr 15;29656430
Effects of green tea on miRNA and microbiome of oral epithelium.Adami, Guy R; Tangney, Christy C; Tang, Jessica L; Zhou, Yalu; Ghaffari, Saba; Naqib, Ankur; Sinha, Saurabh; Green, Stefan J; Schwartz, Joel LScientific reports.2018 Apr 12;29651001
Massive mining of publicly available RNA-seq data from human and mouse.Lachmann, Alexander; Torre, Denis; Keenan, Alexandra B; Jagodnik, Kathleen M; Lee, Hoyjin J; Wang, Lily; Silverstein, Moshe C; Ma'ayan, AviNature communications.;29636450
SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications.Kalinin, Alexandr A; Palanimalai, Selvam; Dinov, Ivo DProceedings of the 2nd Workshop on Human-In-the-Loop Data Analytics. Workshop on Human-In-the-Loop Data Analytics (2nd : 2017 : Chicago, Ill.).2017 Apr;29630069
CIDER: Enhancing the Performance of Computational Eyeglasses.Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, DeepakProceedings. Eye Tracking Research & Applications Symposium.2016 Mar;29629433
Emu: Engagement Modeling for User Studies.Ho, Bo-Jhang; Nikzad, Nima; Balaji, Bharathan; Srivastava, ManiProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2017 Sep;29629432
RSTensorFlow: GPU Enabled TensorFlow for Deep Learning on Commodity Android Devices.Alzantot, Moustafa; Wang, Yingnan; Ren, Zhengshuang; Srivastava, Mani BMobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services.2017 Jun;29629431
Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture.Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, RoseStroke.2018 May;29622625
Ketamine and ketamine metabolites as novel estrogen receptor ligands: Induction of cytochrome P450 and AMPA glutamate receptor gene expression.Ho, Ming-Fen; Correia, Cristina; Ingle, James N; Kaddurah-Daouk, Rima; Wang, Liewei; Kaufmann, Scott H; Weinshilboum, Richard MBiochemical pharmacology.2018 Jun;29621538
Content Is King: Databases Preserve the Collective Information of Science.Yates 3rd, John RJournal of biomolecular techniques : JBT.2018 Apr;29618955
Presurgical localization and spatial shift of resting state networks in patients with brain metastases.Ding, Ju-Rong; Zhu, Fangmei; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Thompson, Paul MBrain imaging and behavior.2018 Apr 02;29611075
Structural dynamics is a determinant of the functional significance of missense variants.Ponzoni, Luca; Bahar, IvetProceedings of the National Academy of Sciences of the United States of America.2018 Apr 17;29610305
Binary Classifier Calibration Using an Ensemble of Piecewise Linear Regression Models.Naeini, Mahdi Pakdaman; Cooper, Gregory FKnowledge and information systems.2018 Jan;29606784
Physical activity is associated with changes in knee cartilage microstructure.Halilaj, E; Hastie, T J; Gold, G E; Delp, S LOsteoarthritis and cartilage.2018 Jun;29605382
Optimizing Digital Integrated Care via Micro-Randomized Trials.Walton, Ashley; Nahum-Shani, Inbal; Crosby, Lori; Klasnja, Predrag; Murphy, SusanClinical pharmacology and therapeutics.2018 Mar 31;29604043
SnapVX: A Network-Based Convex Optimization Solver.Hallac, David; Wong, Christopher; Diamond, Steven; Sharang, Abhijit; Sosi?, Rok; Boyd, Stephen; Leskovec, JureJournal of machine learning research : JMLR.2017;29599649
Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines.Ellrott, Kyle; Bailey, Matthew H; Saksena, Gordon; Covington, Kyle R; Kandoth, Cyriac; Stewart, Chip; Hess, Julian; Ma, Singer; Chiotti, Kami E; McLellan, Michael; Sofia, Heidi J; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li; MC3 Working Group; Cancer Genome Atlas Research NetworkCell systems.2018 Mar 28;29596782
Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression.Wilson, Ander; Zigler, Corwin M; Patel, Chirag J; Dominici, FrancescaBiometrics.2018 09;29569228
Genetic Drivers of Pancreatic Islet Function.Keller, Mark P; Gatti, Daniel M; Schueler, Kathryn L; Rabaglia, Mary E; Stapleton, Donnie S; Simecek, Petr; Vincent, Matthew; Allen, Sadie; Broman, Aimee Teo; Bacher, Rhonda; Kendziorski, Christina; Broman, Karl W; Yandell, Brian S; Churchill, Gary A; AttGenetics.2018 05;29567659
Biomedical informatics and machine learning for clinical genomics.Diao, James A; Kohane, Isaac S; Manrai, Arjun KHuman molecular genetics.2018 May 01;29566172
QSAR-Driven Design and Discovery of Novel Compounds With Antiplasmodial and Transmission Blocking Activities.Lima, Marilia N N; Melo-Filho, Cleber C; Cassiano, Gustavo C; Neves, Bruno J; Alves, Vinicius M; Braga, Rodolpho C; Cravo, Pedro V L; Muratov, Eugene N; Calit, Juliana; Bargieri, Daniel Y; Costa, Fabio T M; Andrade, Carolina HFrontiers in pharmacology.2018;29559909
Linear assembly of a human centromere on the Y chromosome.Jain, Miten; Olsen, Hugh E; Turner, Daniel J; Stoddart, David; Bulazel, Kira V; Paten, Benedict; Haussler, David; Willard, Huntington F; Akeson, Mark; Miga, Karen HNature biotechnology.2018 Mar 19;29553574
Predicting Daily Activities From Egocentric Images Using Deep Learning.Castro, Daniel; Hickson, Steven; Bettadapura, Vinay; Thomaz, Edison; Abowd, Gregory; Christensen, Henrik; Essa, IrfanProceedings. International Symposium on Wearable Computers.2015 Aug;29553145
Developing Optimized Adaptive Interventions in Education.Almirall, Daniel; Kasari, Connie; McCaffrey, Daniel F; Nahum-Shani, InbalJournal of research on educational effectiveness.2018;29552270
Emotional Processing in Obsessive-Compulsive Disorder: A Systematic Review and Meta-analysis of 25 Functional Neuroimaging Studies.Thorsen, Anders Lillevik; Hagland, Pernille; Radua, Joaquim; Mataix-Cols, David; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile ABiological psychiatry. Cognitive neuroscience and neuroimaging.2018 Feb 03;29550459
Adding Reg3? to the acute coronary syndrome prognostic marker list.Lindsey, Merry L; Mouton, Alan J; Ma, YonggangInternational journal of cardiology.2018 05 01;29544938
Anytime Exploration for Multi-armed Bandits using Confidence Information.Jun, Kwang-Sung; Nowak, RobertJMLR workshop and conference proceedings.2016 Jun;29541329
Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters.Sweeney, Timothy E; Azad, Tej D; Donato, Michele; Haynes, Winston A; Perumal, Thanneer M; Henao, Ricardo; Bermejo-Martin, Jesús F; Almansa, Raquel; Tamayo, Eduardo; Howrylak, Judith A; Choi, Augustine; Parnell, Grant P; Tang, Benjamin; Nichols, Marshall; Woods, Christopher W; Ginsburg, Geoffrey S; Kingsmore, Stephen F; Omberg, Larsson; Mangravite, Lara M; Wong, Hector R; Tsalik, Ephraim L; Langley, Raymond J; Khatri, PurveshCritical care medicine.2018 Mar 13;29537985
A Practical Approach for Recognizing Eating Moments with Wrist-Mounted Inertial Sensing.Thomaz, Edison; Essa, Irfan; Abowd, Gregory DProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2015 Sep;29520397
Discovery of Causal Models that Contain Latent Variables through Bayesian Scoring of Independence Constraints.Jabbari, Fattaneh; Ramsey, Joseph; Spirtes, Peter; Cooper, GregoryMachine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference).2017 Sep;29520396
Chronodes: Interactive Multifocus Exploration of Event Sequences.Polack JR., Peter J; Chen, Shang-Tse; Kahng, Minsuk; DE Barbaro, Kaya; Basole, Rahul; Sharmin, Moushumi; Chau, Duen HorngACM transactions on interactive intelligent systems.2018 Feb;29515937
RNA expression profiling in sulfamethoxazole-treated patients with a range of in vitro lymphocyte cytotoxicity phenotypes.Reinhart, Jennifer M; Rose, Warren; Panyard, Daniel J; Newton, Michael A; Liebenstein, Tyler K; Yee, Jeremiah; Trepanier, Lauren APharmacology research & perspectives.2018 04;29511567
Susceptibility of brain atrophy toTRIB3in Alzheimer's disease, evidence from functional prioritization in imaging genetics.Lorenzi, Marco; Altmann, Andre; Gutman, Boris; Wray, Selina; Arber, Charles; Hibar, Derrek P; Jahanshad, Neda; Schott, Jonathan M; Alexander, Daniel C; Thompson, Paul M; Ourselin, Sebastien; Alzheimer?s Disease Neuroimaging InitiativeProceedings of the National Academy of Sciences of the United States of America.2018 Mar 20;29511103
Some methods for heterogeneous treatment effect estimation in high dimensions.Powers, Scott; Qian, Junyang; Jung, Kenneth; Schuler, Alejandro; Shah, Nigam H; Hastie, Trevor; Tibshirani, RobertStatistics in medicine.2018 May 20;29508417
Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation.Sadat, Md Nazmus; Jiang, Xiaoqian; Aziz, Md Momin Al; Wang, Shuang; Mohammed, NomanJMIR medical informatics.2018 Mar 05;29506966
Exploring Symmetric and Asymmetric Bimanual Eating Detection with Inertial Sensors on the Wrist.Thomaz, Edison; Bedri, Abdelkareem; Prioleau, Temiloluwa; Essa, Irfan; Abowd, Gregory DDigitalBiomarkers'17 : proceedings of the 1st Workshop on Digital Biomarkers : June 23, 2017, Niagara Falls, NY, USA. Workshop on Digital Biomarkers (1st : 2017 : Niagara Falls, N.Y.).2017 Jul;29505038
SARA: A Mobile App to Engage Users in Health Data Collection.Rabbi, Mashfiqui; Philyaw-Kotov, Meredith; Lee, Jinseok; Mansour, Anthony; Dent, Laura; Wang, Xiaolei; Cunningham, Rebecca; Bonar, Erin; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, SusanProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2017 Sep;29503985
From Pressure to Path: Barometer-based Vehicle Tracking.Ho, Bo-Jhang; Martin, Paul; Swaminathan, Prashanth; Srivastava, ManiBuildSys'15 : proceedings of the 2nd ACM International Conference on Embedded Systems for Energy-Efficient Buildings : November 4-5, 2015, Seoul, South Korea. ACM Conference on Embedded Systems for Energy-Efficient Buildings (2nd : 2015....2015 Nov;29503981
Survival models and health sequences.Dempsey, Walter; McCullagh, PeterLifetime data analysis.2018 Mar 03;29502184
Neuroimaging of the Injured Pediatric Brain: Methods and New Lessons.Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FThe Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.;29488436
Exploring applications of crowdsourcing to cryo-EM.Bruggemann, Jacob; Lander, Gabriel C; Su, Andrew IJournal of structural biology.2018 Jul;29486249
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses.Torre, Denis; Krawczuk, Patrycja; Jagodnik, Kathleen M; Lachmann, Alexander; Wang, Zichen; Wang, Lily; Kuleshov, Maxim V; Ma'ayan, AviScientific data.2018 Feb 27;29485625
Comment.Reiss, Philip T; Goldsmith, JeffJournal of the American Statistical Association.2017;29479124
Assessing the Practice of Biomedical Ontology Evaluation: Gaps and Opportunities.Amith, Muhammad F; He, Zhe; Bian, Jiang; Antonio Lossio-Ventura, Juan; Tao, CuiJournal of biomedical informatics.2018 Feb 17;29462669
Superbubbles, Ultrabubbles, and Cacti.Paten, Benedict; Eizenga, Jordan M; Rosen, Yohei M; Novak, Adam M; Garrison, Erik; Hickey, GlennJournal of computational biology : a journal of computational molecular cell biology.2018 Feb 20;29461862
Learning Activity Predictors from Sensor Data: Algorithms, Evaluation, and Applications.Minor, Bryan; Doppa, Janardhan Rao; Cook, Diane JIEEE transactions on knowledge and data engineering.2017 Dec 01;29456436
A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.Toor, Jugmohit S; Rao, Arjun A; McShan, Andrew C; Yarmarkovich, Mark; Nerli, Santrupti; Yamaguchi, Karissa; Madejska, Ada A; Nguyen, Son; Tripathi, Sarvind; Maris, John M; Salama, Sofie R; Haussler, David; Sgourakis, Nikolaos GFrontiers in immunology.2018;29441070
Quantitative high-throughput phenotypic screening of pediatric cancer cell lines identifies multiple opportunities for drug repurposing.Shen, Min; Asawa, Rosita; Zhang, Ya-Qin; Cunningham, Elizabeth; Sun, Hongmao; Tropsha, Alexander; Janzen, William P; Muratov, Eugene N; Capuzzi, Stephen J; Farag, Sherif; Jadhav, Ajit; Blatt, Julie; Simeonov, Anton; Martinez, Natalia JOncotarget.2018 Jan 12;29435139
Nanopore sequencing and assembly of a human genome with ultra-long reads.Jain, Miten; Koren, Sergey; Miga, Karen H; Quick, Josh; Rand, Arthur C; Sasani, Thomas A; Tyson, John R; Beggs, Andrew D; Dilthey, Alexander T; Fiddes, Ian T; Malla, Sunir; Marriott, Hannah; Nieto, Tom; O'Grady, Justin; Olsen, Hugh E; Pedersen, Brent S; Rhie, Arang; Richardson, Hollian; Quinlan, Aaron R; Snutch, Terrance P; Tee, Louise; Paten, Benedict; Phillippy, Adam M; Simpson, Jared T; Loman, Nicholas J; Loose, MatthewNature biotechnology.2018 Jan 29;29431738
Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging.Kim, Hyunwoo J; Adluru, Nagesh; Suri, Heemanshu; Vemuri, Baba C; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2017 Jul;29430166
Integrated Theory- and Data-driven Feature Selection in Gene Expression Data Analysis.Raghu, Vineet K; Ge, Xiaoyu; Chrysanthis, Panos K; Benos, Panayiotis VProceedings. International Conference on Data Engineering.2017 Apr;29422764
iLid: Low-power Sensing of Fatigue and Drowsiness Measures on a Computational Eyeglass.Rostaminia, Soha; Mayberry, Addison; Ganesan, Deepak; Marlin, Benjamin; Gummeson, JeremyProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies.2017 Jun;29417956
Online Graph Completion: Multivariate Signal Recovery in Computer Vision.Kim, Won Hwa; Jalal, Mona; Hwang, Seongjae; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2017 Jul;29416294
The Incremental Multiresolution Matrix Factorization Algorithm.Ithapu, Vamsi K; Kondor, Risi; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2017 Jul;29416293
Neuroanatomical morphometric characterization of sex differences in youth using statistical learning.Sepehrband, Farshid; Lynch, Kirsten M; Cabeen, Ryan P; Gonzalez-Zacarias, Clio; Zhao, Lu; D'Arcy, Mike; Kesselman, Carl; Herting, Megan M; Dinov, Ivo D; Toga, Arthur W; Clark, Kristi ANeuroImage.2018 May 15;29414494
The Influence of Study-Level Inference Models and Study Set Size on Coordinate-Based fMRI Meta-Analyses.Bossier, Han; Seurinck, Ruth; Kühn, Simone; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Martinot, Jean-Luc; Lemaitre, Herve; Paus, Tomá?; Millenet, Sabina; Moerkerke, BeatrijsFrontiers in neuroscience.2017;29403344
Anyone Can Become a Troll: Causes of Trolling Behavior in Online Discussions.Cheng, Justin; Bernstein, Michael; Danescu-Niculescu-Mizil, Cristian; Leskovec, JureCSCW : proceedings of the Conference on Computer-Supported Cooperative Work. Conference on Computer-Supported Cooperative Work.2017 Feb-Mar;29399664
Gaussian Quadrature for Kernel Features.Dao, Tri; De Sa, Christopher; Ré, ChristopherAdvances in neural information processing systems.2017 Dec;29398882
Understanding and Optimizing Asynchronous Low-Precision Stochastic Gradient Descent.De Sa, Christopher; Feldman, Matthew; Ré, Christopher; Olukotun, KunleProceedings. International Symposium on Computer Architecture.2017 Jun;29391770
Inferring Generative Model Structure with Static Analysis.Varma, Paroma; He, Bryan; Bajaj, Payal; Banerjee, Imon; Khandwala, Nishith; Rubin, Daniel L; Ré, ChristopherAdvances in neural information processing systems.2017 Dec;29391769
Two-Sample Tests for High-Dimensional Linear Regression with an Application to Detecting Interactions.Xia, Yin; Cai, Tianxi; Cai, T TonyStatistica Sinica.2018 Jan;29386856
Statistical tests and identifiability conditions for pooling and analyzing multisite datasets.Zhou, Hao Henry; Singh, Vikas; Johnson, Sterling C; Wahba, Grace; Alzheimer?s Disease Neuroimaging InitiativeProceedings of the National Academy of Sciences of the United States of America.2018 Feb 13;29386387
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.Menschaert, Gerben; Wang, Xiaojing; Jones, Andrew R; Ghali, Fawaz; Fenyö, David; Olexiouk, Volodimir; Zhang, Bing; Deutsch, Eric W; Ternent, Tobias; Vizcaíno, Juan AntonioGenome biology.2018 01 31;29386051
Interleukins and their signaling pathways in the Reactome biological pathway database.Jupe, Steve; Ray, Keith; Roca, Corina Duenas; Varusai, Thawfeek; Shamovsky, Veronica; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, HenningThe Journal of allergy and clinical immunology.2018 Apr;29378288
Cognitive genomics: Searching for the genetic roots of neuropsychological functioning.Bearden, Carrie E; Glahn, David CNeuropsychology.2017 Nov;29376674
Using Collaborative Simulation Modeling to Develop a Web-Based Tool to Support Policy-Level Decision Making About Breast Cancer Screening Initiation Age.Burnside, Elizabeth S; Lee, Sandra J; Bennette, Carrie; Near, Aimee M; Alagoz, Oguzhan; Huang, Hui; van den Broek, Jeroen J; Kim, Joo Yeon; Ergun, Mehmet A; van Ravesteyn, Nicolien T; Stout, Natasha K; de Koning, Harry J; Mandelblatt, Jeanne SMDM policy & practice.2017 Jul;29376135
Learning to Compose Domain-Specific Transformations for Data Augmentation.Ratner, Alexander J; Ehrenberg, Henry R; Hussain, Zeshan; Dunnmon, Jared; Ré, ChristopherAdvances in neural information processing systems.2017 Dec;29375240
Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study.Whelan, Christopher D; Altmann, Andre; Botía, Juan A; Jahanshad, Neda; Hibar, Derrek P; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bartolini, Emanuele; Bergo, Felipe P G; Bernardes, Tauana; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carr, Sarah J; Chen, Jian; Chen, Shuai; Cherubini, Andrea; David, Philippe; Domin, Martin; Foley, Sonya; França, Wendy; Haaker, Gerrit; Isaev, Dmitry; Keller, Simon S; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Langner, Soenke; Lenge, Matteo; Leyden, Kelly M; Liu, Min; Loi, Richard Q; Martin, Pascal; Mascalchi, Mario; Morita, Marcia E; Pariente, Jose C; Rodríguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Yao, Yi; Yasuda, Clarissa L; Zhang, Guohao; Bargalló, Nuria; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris C; Blümcke, Ingmar; Carlson, Chad; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Focke, Niels K; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Kälviäinen, Reetta; Kochunov, Peter; Kwan, Patrick; Labate, Angelo; McDonald, Carrie R; Meletti, Stefano; O'Brien, Terence J; Ourselin, Sebastien; Richardson, Mark P; Striano, Pasquale; Thesen, Thomas; Wiest, Roland; Zhang, Junsong; Vezzani, Annamaria; Ryten, Mina; Thompson, Paul M; Sisodiya, Sanjay MBrain : a journal of neurology.2018 Feb 01;29365066
e wrapper: Operationalizing engagement strategies in mHealth.Wagner 3rd, Blake; Liu, Elaine; Shaw, Steven D; Iakovlev, Gleb; Zhou, Linlu; Harrington, Christina; Abowd, Gregory; Yoon, Carolyn; Kumar, Santosh; Murphy, Susan; Spring, Bonnie; Nahum-Shani, InbalProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2017 Sep;29362728
mHealth Visual Discovery Dashboard.Fang, Dezhi; Hohman, Fred; Polack, Peter; Sarker, Hillol; Kahng, Minsuk; Sharmin, Moushumi; al'Absi, Mustafa; Chau, Duen HorngProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2017 Sep;29354812
ShapeShop: Towards Understanding Deep Learning Representations via Interactive Experimentation.Hohman, Fred; Hodas, Nathan; Chau, Duen HorngExtended abstracts on Human factors in computing systems. CHI Conference.2017 May;29354810
Loyalty in Online Communities.Hamilton, William L; Zhang, Justine; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, JureProceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media.2017 May;29354326
Community Identity and User Engagement in a Multi-Community Landscape.Zhang, Justine; Hamilton, William L; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, JureProceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media.2017 May;29354325
Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer-associated genetic variant rs4415084.Zhang, Yi; Manjunath, Mohith; Zhang, Shilu; Chasman, Deborah; Roy, Sushmita; Song, Jun SCancer research.2018 Jan 19;29351903
Guidelines for authors and reviewers on antibody use in physiology studies.Brooks, Heddwen L; Lindsey, Merry LAmerican journal of physiology. Heart and circulatory physiology.2018 Apr 01;29351459
Guidelines for measuring cardiac physiology in mice.Lindsey, Merry L; Kassiri, Zamaneh; Virag, Jitka A I; de Castro Brás, Lisandra E; Scherrer-Crosbie, MarielleAmerican journal of physiology. Heart and circulatory physiology.2018 Apr 01;29351456
Guidelines for experimental models of myocardial ischemia and infarction.Lindsey, Merry L; Bolli, Roberto; Canty Jr, John M; Du, Xiao-Jun; Frangogiannis, Nikolaos G; Frantz, Stefan; Gourdie, Robert G; Holmes, Jeffrey W; Jones, Steven P; Kloner, Robert A; Lefer, David J; Liao, Ronglih; Murphy, Elizabeth; Ping, Peipei; PrzyklenkAmerican journal of physiology. Heart and circulatory physiology.2018 Apr 01;29351451
MIRO: guidelines for minimum information for the reporting of an ontology.Matentzoglu, Nicolas; Malone, James; Mungall, Chris; Stevens, RobertJournal of biomedical semantics.2018 Jan 18;29347969
Robust Dynamic Risk Prediction with Longitudinal Studies.Zhou, Qian M; Dai, Wei; Zheng, Yingye; Cai, TianxiStatistical theory and related fields.2017;29335682
Learning Tree-Structured Detection Cascades for Heterogeneous Networks of Embedded Devices.Dadkhahi, Hamid; Marlin, Benjamin MKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2017 Aug;29333328
A bibliometric review of drug repurposing.Baker, Nancy C; Ekins, Sean; Williams, Antony J; Tropsha, AlexanderDrug discovery today.2018 Mar;29330123
Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis WProteomics.2018 Feb;29319931
Standardized Effect Sizes for Preventive Mobile Health Interventions in Micro-randomized Trials.Luers, Brook; Klasnja, Predrag; Murphy, SusanPrevention science : the official journal of the Society for Prevention Research.2018 Jan 09;29318443
Integrated omics dissection of proteome dynamics during cardiac remodeling.Lau, Edward; Cao, Quan; Lam, Maggie P Y; Wang, Jie; Ng, Dominic C M; Bleakley, Brian J; Lee, Jessica M; Liem, David A; Wang, Ding; Hermjakob, Henning; Ping, PeipeiNature communications.;29317621
Gut microbiome populations are associated with structure-specific changes in white matter architecture.Ong, Irene M; Gonzalez, Jose G; McIlwain, Sean J; Sawin, Emily A; Schoen, Andrew J; Adluru, Nagesh; Alexander, Andrew L; Yu, John-Paul JTranslational psychiatry.2018 Jan 10;29317592
Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide.Marshall, Iain J; Noel-Storr, Anna; Kuiper, Joël; Thomas, James; Wallace, Byron CResearch synthesis methods.;29314757
Interactive Exploration on Large Genomic Datasets.Tu, EricEECS technical report series.;29308454
Hypothesis Testing in Unsupervised Domain Adaptation with Applications in Alzheimer's Disease.Zhou, Hao Henry; Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, VikasAdvances in neural information processing systems.2016;29308004
Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function.Sallam, Tamer; Sandhu, Jaspreet; Tontonoz, PeterCirculation research.2018 Jan 05;29301847
Chemotext: A Publicly Available Web Server for Mining Drug-Target-Disease Relationships in PubMed.Capuzzi, Stephen J; Thornton, Thomas E; Liu, Kammy; Baker, Nancy; Lam, Wai In; O'Banion, Colin P; Muratov, Eugene N; Pozefsky, Diane; Tropsha, AlexanderJournal of chemical information and modeling.;29300482
Linking temporal medical records using non-protected health information data.Bonomi, Luca; Jiang, XiaoqianStatistical methods in medical research.2017 Jan 01;29298592
Building Interoperable FHIR-Based Vocabulary Mapping Services: A Case Study of OHDSI Vocabularies and Mappings.Jiang, Guoqian; Kiefer, Richard; Prud'hommeaux, Eric; Solbrig, Harold RStudies in health technology and informatics.2017;29295408
A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR.Jiang, Guoqian; Kiefer, Richard C; Sharma, Deepak K; Prud'hommeaux, Eric; Solbrig, Harold RStudies in health technology and informatics.2017;29295227
Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications.Hong, Na; Prodduturi, Naresh; Wang, Chen; Jiang, GuoqianStudies in health technology and informatics.2017;29295223
Investigating the differential contributions of sex and brain size to gray matter asymmetry.Kurth, Florian; Thompson, Paul M; Luders, EileenCortex; a journal devoted to the study of the nervous system and behavior.2018 Feb;29287244
Proteomic analysis of the cardiac extracellular matrix: clinical research applications.Lindsey, Merry L; Jung, Mira; Hall, Michael E; DeLeon-Pennell, Kristine YExpert review of proteomics.2018 Feb;29285949
Neural response to working memory demand predicts neurocognitive deficits in HIV.Cohen, Ronald A; Siegel, S; Gullett, J M; Porges, E; Woods, A J; Huang, H; Zhu, Y; Tashima, K; Ding, M-ZJournal of neurovirology.2018 Jun;29280107
Center of Excellence for Mobile Sensor Data-to-Knowledge (MD2K).Kumar, Santosh; Abowd, Gregory; Abraham, William T; al'Absi, Mustafa; Chau, Duen Horng Polo; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Hnat, Timothy; Hossain, Syed Monowar; Ives, Zachary; Kerr, Jacqueline; Marlin, Benjamin M; Murphy, Susan; Rehg, James M; Nahum-Shani, Inbal; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, DaveIEEE pervasive computing.2017 Apr-Jun;29276451
Neural circuitry underlying sustained attention in healthy adolescents and in ADHD symptomatology.O'Halloran, Laura; Cao, Zhipeng; Ruddy, Kathy; Jollans, Lee; Albaugh, Matthew D; Aleni, Andrea; Potter, Alexandra S; Vahey, Nigel; Banaschewski, Tobias; Hohmann, Sarah; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Kelly, Clare; Whelan, RobertNeuroImage.2018 04 01;29274748
MinION-based long-read sequencing and assembly extends theCaenorhabditis elegansreference genome.Tyson, John R; O'Neil, Nigel J; Jain, Miten; Olsen, Hugh E; Hieter, Philip; Snutch, Terrance PGenome research.2018 Feb;29273626
SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis.Magis, Andrew T; Funk, Cory C; Price, Nathan DIEEE life sciences letters.2015 Aug;29270443
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API.Gutiérrez-Sacristán, Alba; Guedj, Romain; Korodi, Gabor; Stedman, Jason; Furlong, Laura I; Patel, Chirag J; Kohane, Isaac S; Avillach, PaulBioinformatics (Oxford, England).2017 Dec 18;29267850
A community effort to protect genomic data sharing, collaboration and outsourcing.Wang, Shuang; Jiang, Xiaoqian; Tang, Haixu; Wang, Xiaofeng; Bu, Diyue; Carey, Knox; Dyke, Stephanie Om; Fox, Dov; Jiang, Chao; Lauter, Kristin; Malin, Bradley; Sofia, Heidi; Telenti, Amalio; Wang, Lei; Wang, Wenhao; Ohno-Machado, LucilaNPJ genomic medicine.2017;29263842
Deep Learning based Classification of FDG-PET Data for Alzheimers Disease Categories.Singh, Shibani; Srivastava, Anant; Mi, Liang; Caselli, Richard J; Chen, Kewei; Goradia, Dhruman; Reiman, Eric M; Wang, YalinProceedings of SPIE--the International Society for Optical Engineering.2017 Oct;29263566
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.Glusman, Gustavo; Rose, Peter W; Prli?, Andreas; Dougherty, Jennifer; Duarte, José M; Hoffman, Andrew S; Barton, Geoffrey J; Bendixen, Emøke; Bergquist, Timothy; Bock, Christian; Brunk, Elizabeth; Buljan, Marija; Burley, Stephen K; Cai, Binghuang; Carter, Hannah; Gao, JianJiong; Godzik, Adam; Heuer, Michael; Hicks, Michael; Hrabe, Thomas; Karchin, Rachel; Leman, Julia Koehler; Lane, Lydie; Masica, David L; Mooney, Sean D; Moult, John; Omenn, Gilbert S; Pearl, Frances; Pejaver, Vikas; Reynolds, Sheila M; Rokem, Ariel; Schwede, Torsten; Song, Sicheng; Tilgner, Hagen; Valasatava, Yana; Zhang, Yang; Deutsch, Eric WGenome medicine.2017 Dec 18;29254494
Complete hazard ranking to analyze right-censored data: An ALS survival study.Huang, Zhengnan; Zhang, Hongjiu; Boss, Jonathan; Goutman, Stephen A; Mukherjee, Bhramar; Dinov, Ivo D; Guan, Yuanfang; Pooled Resource Open-Access ALS Clinical Trials ConsortiumPLoS computational biology.;29253881
Understanding cardiac extracellular matrix remodeling to develop biomarkers of myocardial infarction outcomes.Nielsen, Signe Holm; Mouton, Alan J; DeLeon-Pennell, Kristine Y; Genovese, Federica; Karsdal, Morten; Lindsey, Merry LMatrix biology : journal of the International Society for Matrix Biology.;29247693
Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research.Erdemir, Ahmet; Hunter, Peter J; Holzapfel, Gerhard A; Loew, Leslie M; Middleton, John; Jacobs, Christopher R; Nithiarasu, Perumal; Löhner, Rainlad; Wei, Guowei; Winkelstein, Beth A; Barocas, Victor H; Guilak, Farshid; Ku, Joy P; Hicks, Jennifer L; Delp, Scott L; Sacks, Michael; Weiss, Jeffrey A; Ateshian, Gerard A; Maas, Steve A; McCulloch, Andrew D; Peng, Grace C YJournal of biomechanical engineering.2018 Feb 01;29247253
Data-Driven Mammography Screening Practices-Reply.Lee, Cindy S; Sickles, Edward A; Burnside, Elizabeth SJAMA oncology.2017 Dec 14;29242927
Embedding Learning with Events in Heterogeneous Information Networks.Gui, Huan; Liu, Jialu; Tao, Fangbo; Jiang, Meng; Norick, Brandon; Kaplan, Lance; Han, JiaweiIEEE transactions on knowledge and data engineering.2017 Nov;29242698
Finding Pure Sub-Models for Improved Differentiation of Bi-Factor and Second-Order Models.Yang, Renjie; Spirtes, Peter; Scheines, Richard; Reise, Steven P; Mansoff, MaxwellStructural equation modeling : a multidisciplinary journal.2017;29230085
An Optimal Transportation based Univariate Neuroimaging Index.Mi, Liang; Zhang, Wen; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Reiman, Eric M; Gu, Xianfeng; Wang, YalinProceedings. IEEE International Conference on Computer Vision.2017;29225556
Action Centered Contextual Bandits.Greenewald, Kristjan; Tewari, Ambuj; Klasnja, Predrag; Murphy, SusanAdvances in neural information processing systems.2017 Dec;29225449
Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure.P Tafti, Ahmad; Badger, Jonathan; LaRose, Eric; Shirzadi, Ehsan; Mahnke, Andrea; Mayer, John; Ye, Zhan; Page, David; Peissig, PeggyJMIR medical informatics.2017 Dec 08;29222076
VisAGE: Integrating external knowledge into electronic medical record visualization.Huang, Edward W; Wang, Sheng; Zhai, ChengXiangPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2018;29218916
Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline.Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, PeterPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2018;29218892
Democratizing data science through data science training.Van Horn, John Darrell; Fierro, Lily; Kamdar, Jeana; Gordon, Jonathan; Stewart, Crystal; Bhattrai, Avnish; Abe, Sumiko; Lei, Xiaoxiao; O'Driscoll, Caroline; Sinha, Aakanchha; Jain, Priyambada; Burns, Gully; Lerman, Kristina; Ambite, José LuisPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2018;29218890
Large-scale analysis of disease pathways in the human interactome.Agrawal, Monica; Zitnik, Marinka; Leskovec, JurePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2018;29218874
Smaller Hippocampal Volume in Posttraumatic Stress Disorder: A Multisite ENIGMA-PGC Study: Subcortical Volumetry Results From Posttraumatic Stress Disorder Consortia.Logue, Mark W; van Rooij, Sanne J H; Dennis, Emily L; Davis, Sarah L; Hayes, Jasmeet P; Stevens, Jennifer S; Densmore, Maria; Haswell, Courtney C; Ipser, Jonathan; Koch, Saskia B J; Korgaonkar, Mayuresh; Lebois, Lauren A M; Peverill, Matthew; Baker, Justin T; Boedhoe, Premika S W; Frijling, Jessie L; Gruber, Staci A; Harpaz-Rotem, Ilan; Jahanshad, Neda; Koopowitz, Sheri; Levy, Ifat; Nawijn, Laura; O'Connor, Lauren; Olff, Miranda; Salat, David H; Sheridan, Margaret A; Spielberg, Jeffrey M; van Zuiden, Mirjam; Winternitz, Sherry R; Wolff, Jonathan D; Wolf, Erika J; Wang, Xin; Wrocklage, Kristen; Abdallah, Chadi G; Bryant, Richard A; Geuze, Elbert; Jovanovic, Tanja; Kaufman, Milissa L; King, Anthony P; Krystal, John H; Lagopoulos, Jim; Bennett, Maxwell; Lanius, Ruth; Liberzon, Israel; McGlinchey, Regina E; McLaughlin, Katie A; Milberg, William P; Miller, Mark W; Ressler, Kerry J; Veltman, Dick J; Stein, Dan J; Thomaes, Kathleen; Thompson, Paul M; Morey, Rajendra ABiological psychiatry.2018 Feb 01;29217296
KAT2A coupled with the ?-KGDH complex acts as a histone H3 succinyltransferase.Wang, Yugang; Guo, Yusong R; Liu, Ke; Yin, Zheng; Liu, Rui; Xia, Yan; Tan, Lin; Yang, Peiying; Lee, Jong-Ho; Li, Xin-Jian; Hawke, David; Zheng, Yanhua; Qian, Xu; Lyu, Jianxin; He, Jie; Xing, Dongming; Tao, Yizhi Jane; Lu, ZhiminNature.2017 12 14;29211711
Development and application of two semi-automated tools for targeted medical product surveillance in a distributed data network.Connolly, John G; Wang, Shirley V; Fuller, Candace C; Toh, Sengwee; Panozzo, Catherine A; Cocoros, Noelle; Zhou, Meijia; Gagne, Joshua J; Maro, Judith CCurrent epidemiology reports.2017 Dec;29204333
Estimating Effects of Dynamic Treatment Strategies in Pharmacoepidemiologic Studies with Time-varying Confounding: A Primer.Li, Xiaojuan; Young, Jessica G; Toh, SengweeCurrent epidemiology reports.2017 Dec;29204332
Pharmacoepidemiology in the era of real-world evidence.Toh, SengweeCurrent epidemiology reports.2017 Dec;29204331
Estimating bounds on causal effects in high-dimensional and possibly confounded systems.Malinsky, Daniel; Spirtes, PeterInternational journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society.2017 Sep;29203954
APPROXIMATING PRINCIPAL GENETIC COMPONENTS OF SUBCORTICAL SHAPE.Gutman, Boris A; Pizzagalli, Fabrizio; Jahanshad, Neda; Wright, Margaret J; McMahon, Katie L; de Zubicaray, Greig; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201284
A COMPARISON OF NETWORK DEFINITIONS FOR DETECTING SEX DIFFERENCES IN BRAIN CONNECTIVITY USING SUPPORT VECTOR MACHINES.Hafzalla, George W; Ragothaman, Anjanibhargavi; Faskowitz, Joshua; Jahanshad, Neda; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Braskie, Meredith N; Prasad, Gautam; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201283
THE IMPACT OF MATCHING FUNCTIONAL ON ATROPHY MEASUREMENT FROM GEODESIC SHOOTING IN DIFFEOMORPHISMS.Fleishman, Greg M; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201282
Graph theoretical approaches towards understanding differences in frontoparietal and default mode networks in Autism.Riedel, Brandalyn C; Jahanshad, Neda; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201281
A NETWORK APPROACH TO EXAMINING INJURY SEVERITY IN PEDIATRIC TBI.Dennis, Emily L; Rashid, Faisal; Jahanshad, Neda; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201280
MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS.Dennis, Emily L; Rashid, Faisal; Faskowitz, Josh; Jin, Yan; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Hickie, Ian B; Wright, Margaret J; Jahanshad, Neda; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201279
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.Keenan, Alexandra B; Jenkins, Sherry L; Jagodnik, Kathleen M; Koplev, Simon; He, Edward; Torre, Denis; Wang, Zichen; Dohlman, Anders B; Silverstein, Moshe C; Lachmann, Alexander; Kuleshov, Maxim V; Ma'ayan, Avi; Stathias, Vasileios; Terryn, Raymond; Cooper, Daniel; Forlin, Michele; Koleti, Amar; Vidovic, Dusica; Chung, Caty; Schürer, Stephan C; Vasiliauskas, Jouzas; Pilarczyk, Marcin; Shamsaei, Behrouz; Fazel, Mehdi; Ren, Yan; Niu, Wen; Clark, Nicholas A; White, Shana; Mahi, Naim; Zhang, Lixia; Kouril, Michal; Reichard, John F; Sivaganesan, Siva; Medvedovic, Mario; Meller, Jaroslaw; Koch, Rick J; Birtwistle, Marc R; Iyengar, Ravi; Sobie, Eric A; Azeloglu, Evren U; Kaye, Julia; Osterloh, Jeannette; Haston, Kelly; Kalra, Jaslin; Finkbiener, Steve; Li, Jonathan; Milani, Pamela; Adam, Miriam; Escalante-Chong, Renan; Sachs, Karen; Lenail, Alex; Ramamoorthy, Divya; Fraenkel, Ernest; Daigle, Gavin; Hussain, Uzma; Coye, Alyssa; Rothstein, Jeffrey; Sareen, Dhruv; Ornelas, Loren; Banuelos, Maria; Mandefro, Berhan; Ho, Ritchie; Svendsen, Clive N; Lim, Ryan G; Stocksdale, Jennifer; Casale, Malcolm S; Thompson, Terri G; Wu, Jie; Thompson, Leslie M; Dardov, Victoria; Venkatraman, Vidya; Matlock, Andrea; Van Eyk, Jennifer E; Jaffe, Jacob D; Papanastasiou, Malvina; Subramanian, Aravind; Golub, Todd R; Erickson, Sean D; Fallahi-Sichani, Mohammad; Hafner, Marc; Gray, Nathanael S; Lin, Jia-Ren; Mills, Caitlin E; Muhlich, Jeremy L; Niepel, Mario; Shamu, Caroline E; Williams, Elizabeth H; Wrobel, David; Sorger, Peter K; Heiser, Laura M; Gray, Joe W; Korkola, James E; Mills, Gordon B; LaBarge, Mark; Feiler, Heidi S; Dane, Mark A; Bucher, Elmar; Nederlof, Michel; Sudar, Damir; Gross, Sean; Kilburn, David F; Smith, Rebecca; Devlin, Kaylyn; Margolis, Ron; Derr, Leslie; Lee, Albert; Pillai, AjayCell systems.2017 Nov 24;29199020
Methylation of OPRL1 mediates the effect of psychosocial stress on binge drinking in adolescents.Ruggeri, Barbara; Macare, Christine; Stopponi, Serena; Jia, Tianye; Carvalho, Fabiana M; Robert, Gabriel; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Sommer, Wolfgang H; Bakalkin, Georgy; Ciccocioppo, Roberto; Schumann, Gunter; IMAGEN consortiumJournal of child psychology and psychiatry, and allied disciplines.2017 Dec 02;29197086
Preterm birth leads to hyper-reactive cognitive control processing and poor white matter organization in adulthood.Olsen, Alexander; Dennis, Emily L; Evensen, Kari Anne I; Husby Hollund, Ingrid Marie; Løhaugen, Gro C C; Thompson, Paul M; Brubakk, Ann-Mari; Eikenes, Live; Håberg, Asta KNeuroImage.;29191480
Reactome diagram viewer: data structures and strategies to boost performance.Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Marin-Garcia, Pablo; Ping, Peipei; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, HenningBioinformatics (Oxford, England).;29186351
Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies.Kochunov, Peter; Dickie, Erin W; Viviano, Joseph D; Turner, Jessica; Kingsley, Peter B; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Fieremans, Els; Novikov, Dmitry; Veraart, Jelle; Hong, Elliot L; Malhotra, Anil K; Buchanan, Robert W; Chavez, Sofia; Voineskos, Aristotle NHuman brain mapping.2018 Feb;29181875
Neuroimaging genomics in psychiatry-a translational approach.Mufford, Mary S; Stein, Dan J; Dalvie, Shareefa; Groenewold, Nynke A; Thompson, Paul M; Jahanshad, NedaGenome medicine.2017 Nov 27;29179742
A volumetric conformal mapping approach for clustering white matter fibers in the brain.Gupta, Vikash; Prasad, Gautam; Thompson, PaulSpectral and shape analysis in medical imaging : first International Workshop, SeSAMI 2016, held in conjunction with MICCAI 2016, Athens, Greece, October 21, 2016 : revised selected papers. SeSAMI (Workshop) (1st : 2016 : Athens, Greece).2016 Oct;29177252
A Visual Analytics Approach to Understanding Care Process Variation and Conformance.Basole, Rahul C; Park, Hyunwoo; Gupta, Mayank; Braunstein, Mark L; Chau, Duen Horng; Thompson, MichaelProceedings of the 2015 Workshop on Visual Analytics in Healthcare.2015 Oct;29177250
A Continuous Model of Cortical Connectivity.Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul MMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.2016 Oct;29147688
Multi-modal Registration Improves Group Discrimination in Pediatric Traumatic Brain Injury.Dennis, Emily L; Rashid, Faisal; Villalon-Reina, Julio; Prasad, Gautam; Faskowitz, Joshua; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul MBrainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries : second International Workshop, BrainLes 2016, with the challenges on BRATS, ISLES and mTOP 2016, held in conjunction with MICCAI 2016, Athens, Greece, Octob....2016 Oct;29147687
Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.Chen, Chi-Hua; Wang, Yunpeng; Lo, Min-Tzu; Schork, Andrew; Fan, Chun-Chieh; Holland, Dominic; Kauppi, Karolina; Smeland, Olav B; Djurovic, Srdjan; Sanyal, Nilotpal; Hibar, Derrek P; Thompson, Paul M; Thompson, Wesley K; Andreassen, Ole A; Dale, Anders MScientific reports.;29147026
Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics.Ding, Michael Q; Chen, Lujia; Cooper, Gregory F; Young, Jonathan D; Lu, XinghuaMolecular cancer research : MCR.2017 Nov 13;29133589
An empirical Bayes test for allelic-imbalance detection in ChIP-seq.Zhang, Qi; Keles, SündüzBiostatistics (Oxford, England).;29126153
Cardiac macrophage biology in the steady-state heart, the aging heart, and following myocardial infarction.Ma, Yonggang; Mouton, Alan J; Lindsey, Merry LTranslational research : the journal of laboratory and clinical medicine.2018 01;29106912
Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase.O'Banion, Colin P; Priestman, Melanie A; Hughes, Robert M; Herring, Laura E; Capuzzi, Stephen J; Lawrence, David SCell chemical biology.2017 Oct 25;29104065
Pharmacogenomics: Precision Medicine and Drug Response.Weinshilboum, Richard M; Wang, LieweiMayo Clinic proceedings.2017 Nov;29101939
Aggregating and Predicting Sequence Labels from Crowd Annotations.Nguyen, An T; Wallace, Byron C; Li, Junyi Jessy; Nenkova, Ani; Lease, MatthewProceedings of the conference. Association for Computational Linguistics. Meeting.2017;29093611
Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images.Spagnolo, Daniel M; Al-Kofahi, Yousef; Zhu, Peihong; Lezon, Timothy R; Gough, Albert; Stern, Andrew M; Lee, Adrian V; Ginty, Fiona; Sarachan, Brion; Taylor, D Lansing; Chennubhotla, S ChakraCancer research.2017 Nov 01;29092944
A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).Kuderna, Lukas F K; Tomlinson, Chad; Hillier, LaDeana W; Tran, Annabel; Fiddes, Ian T; Armstrong, Joel; Laayouni, Hafid; Gordon, David; Huddleston, John; Garcia Perez, Raquel; Povolotskaya, Inna; Serres Armero, Aitor; Gómez Garrido, Jèssica; Ho, Daniel; Ribeca, Paolo; Alioto, Tyler; Green, Richard E; Paten, Benedict; Navarro, Arcadi; Betranpetit, Jaume; Herrero, Javier; Eichler, Evan E; Sharp, Andrew J; Feuk, Lars; Warren, Wesley C; Marques-Bonet, TomasGigaScience.2017 Nov 01;29092041
To Three or not to Three: Improving Human Computation Game Onboarding with a Three-Star System.Gaston, Jacqueline; Cooper, SethProceedings of the SIGCHI conference on human factors in computing systems . CHI Conference.2017;29082386
WormBase 2017: molting into a new stage.Lee, Raymond Y N; Howe, Kevin L; Harris, Todd W; Arnaboldi, Valerio; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Davis, Paul; Gao, Sibyl; Grove, Christian; Kishore, Ranjana; Muller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Raciti, DNucleic acids research.2018 Jan 04;29069413
An Assessment of Imaging Informatics for Precision Medicine in Cancer.Chennubhotla, C; Clarke, L P; Fedorov, A; Foran, D; Harris, G; Helton, E; Nordstrom, R; Prior, F; Rubin, D; Saltz, J H; Shalley, E; Sharma, AYearbook of medical informatics.2017 Aug;29063549
Translational MRI Volumetry with NeuroQuant: Effects of Version and Normative Data on Relationships with Memory Performance in Healthy Older Adults and Patients with Mild Cognitive Impairment.Stelmokas, Julija; Yassay, Lance; Giordani, Bruno; Dodge, Hiroko H; Dinov, Ivo D; Bhaumik, Arijit; Sathian, K; Hampstead, Benjamin MJournal of Alzheimer's disease : JAD.2017;29060939
PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals.Wenzel, Sally E; Tyurina, Yulia Y; Zhao, Jinming; St Croix, Claudette M; Dar, Haider H; Mao, Gaowei; Tyurin, Vladimir A; Anthonymuthu, Tamil S; Kapralov, Alexandr A; Amoscato, Andrew A; Mikulska-Ruminska, Karolina; Shrivastava, Indira H; Kenny, Elizabeth M; Yang, Qin; Rosenbaum, Joel C; Sparvero, Louis J; Emlet, David R; Wen, Xiaoyan; Minami, Yoshinori; Qu, Feng; Watkins, Simon C; Holman, Theodore R; VanDemark, Andrew P; Kellum, John A; Bahar, Ivet; Bay?r, Hülya; Kagan, Valerian ECell.2017 Oct 19;29053969
Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach.Wang, Shulei; Arena, Ellen T; Eliceiri, Kevin W; Yuan, MingIEEE transactions on image processing : a publication of the IEEE Signal Processing Society.2018 Feb;29053465
Pharmacogenomic Discovery to Function and Mechanism: Breast Cancer as a Case Study.Wang, Liewei; Ingle, James; Weinshilboum, RichardClinical pharmacology and therapeutics.2018 Feb;29052219
Variation in a range of mTOR-related genes associates with intracranial volume and intellectual disability.Reijnders, M R F; Kousi, M; van Woerden, G M; Klein, M; Bralten, J; Mancini, G M S; van Essen, T; Proietti-Onori, M; Smeets, E E J; van Gastel, M; Stegmann, A P A; Stevens, S J C; Lelieveld, S H; Gilissen, C; Pfundt, R; Tan, P L; Kleefstra, T; Franke, B; Elgersma, Y; Katsanis, N; Brunner, H GNature communications.2017 Oct 20;29051493
Using the Telephone Interview for Cognitive Status and Telephone Montreal Cognitive Assessment for Evaluating Vascular Cognitive Impairment: Promising Call or Put on Hold?Cohen, Ronald A; Alexander, Gene EStroke.2017 11;29042491
County-level assessment of United States kindergarten vaccination rates for measles mumps rubella (MMR) for the 2014-2015 school year.Kluberg, Sheryl A; McGinnis, Denise P; Hswen, Yulin; Majumder, Maimuna S; Santillana, Mauricio; Brownstein, John SVaccine.;29037574
Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies.Wang, Meng; Ji, Zhanglong; Wang, Shuang; Kim, Jihoon; Yang, Hai; Jiang, Xiaoqian; Ohno-Machado, LucilaBioinformatics (Oxford, England).2017 Dec 01;29036461
Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling.Partha, Raghavendran; Chauhan, Bharesh K; Ferreira, Zelia; Robinson, Joseph D; Lathrop, Kira; Nischal, Ken K; Chikina, Maria; Clark, Nathan LeLife.2017 Oct 16;29035697
TeachEnG: a Teaching Engine for Genomics.Kim, Minji; Kim, Yeonsung; Qian, Lei; Song, Jun SBioinformatics (Oxford, England).2017 Oct 15;29028264
A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC.Campbell, Walter S; Karlsson, Daniel; Vreeman, Daniel J; Lazenby, Audrey J; Talmon, Geoffrey A; Campbell, James RJournal of the American Medical Informatics Association : JAMIA.2017 Sep 13;29024958
Landscape of X chromosome inactivation across human tissues.Tukiainen, Taru; Villani, Alexandra-Chloé; Yen, Angela; Rivas, Manuel A; Marshall, Jamie L; Satija, Rahul; Aguirre, Matt; Gauthier, Laura; Fleharty, Mark; Kirby, Andrew; Cummings, Beryl B; Castel, Stephane E; Karczewski, Konrad J; Aguet, François; Byrnes, Andrea; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Lappalainen, Tuuli; Regev, Aviv; Ardlie, Kristin G; Hacohen, Nir; MacArthur, Daniel GNature.2017 Oct 11;29022598
Genetic effects on gene expression across human tissues.GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Lead analysts:; Laboratory, Data Analysis &Coordinating Center (LDACC):; NIH program management:; Biospecimen collection:; Pathology:; eQTL manuscript working group:; Battle, Alexis; Brown, Christopher D; Engelhardt, Barbara E; Montgomery, Stephen BNature.2017 Oct 11;29022597
Dynamic landscape and regulation of RNA editing in mammals.Tan, Meng How; Li, Qin; Shanmugam, Raghuvaran; Piskol, Robert; Kohler, Jennefer; Young, Amy N; Liu, Kaiwen Ivy; Zhang, Rui; Ramaswami, Gokul; Ariyoshi, Kentaro; Gupte, Ankita; Keegan, Liam P; George, Cyril X; Ramu, Avinash; Huang, Ni; Pollina, Elizabeth A; Leeman, Dena S; Rustighi, Alessandra; Goh, Y P Sharon; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Chawla, Ajay; Del Sal, Giannino; Peltz, Gary; Brunet, Anne; Conrad, Donald F; Samuel, Charles E; O'Connell, Mary A; Walkley, Carl R; Nishikura, Kazuko; Li, Jin BillyNature.2017 Oct 11;29022589
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis.Yang, Fan; Wang, Jiebiao; GTEx Consortium; Pierce, Brandon L; Chen, Lin SGenome research.2017 Nov;29021290
Co-expression networks reveal the tissue-specific regulation of transcription and splicing.Saha, Ashis; Kim, Yungil; Gewirtz, Ariel D H; Jo, Brian; Gao, Chuan; McDowell, Ian C; GTEx Consortium; Engelhardt, Barbara E; Battle, AlexisGenome research.2017 Nov;29021288
Ultrafast Comparison of Personal Genomes via Precomputed Genome Fingerprints.Glusman, Gustavo; Mauldin, Denise E; Hood, Leroy E; Robinson, MaxFrontiers in genetics.2017;29018478
Association between anti-citrullinated fibrinogen antibodies and coronary artery disease in rheumatoid arthritis.Hejblum, Boris P; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Sparks, Jeffrey A; Sokolove, Jeremy; Cai, Tianxi; Liao, Katherine PArthritis care & research.2017 Oct 09;28992379
How Gamification Affects Physical Activity: Large-scale Analysis of Walking Challenges in a Mobile Application.Shameli, Ali; Althoff, Tim; Saberi, Amin; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2017 Apr;28990011
Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma.Young, Jonathan D; Cai, Chunhui; Lu, XinghuaBMC bioinformatics.2017 Oct 03;28984190
Applying family analyses to electronic health records to facilitate genetic research.Huang, Xiayuan; Elston, Robert C; Rosa, Guilherme J; Mayer, John; Ye, Zhan; Kitchner, Terrie; Brilliant, Murray H; Page, David; Hebbring, Scott J; Stegle, OliverBioinformatics (Oxford, England).2018 Feb 15;28968884
Structural Neuroimaging of Anorexia Nervosa: Future Directions in the Quest for Mechanisms Underlying Dynamic Alterations.King, Joseph A; Frank, Guido K W; Thompson, Paul M; Ehrlich, StefanBiological psychiatry.;28967386
IPI59: An Actionable Biomarker to Improve Treatment Response in Serous Ovarian Carcinoma Patients.Choi, J; Ye, S; Eng, K H; Korthauer, K; Bradley, W H; Rader, J S; Kendziorski, CStatistics in biosciences.2017 Jun;28966695
Causal Discovery from Nonstationary/Heterogeneous Data: Skeleton Estimation and Orientation Determination.Zhang, Kun; Huang, Biwei; Zhang, Jiji; Glymour, Clark; Schölkopf, BernhardIJCAI : proceedings of the conference.2017 Aug;28966540
Objective measurement of function following lumbar spinal stenosis decompression reveals improved functional capacity with stagnant real-life physical activity.Smuck, Matthew; Muaremi, Amir; Zheng, Patricia; Norden, Justin; Sinha, Aman; Hu, Richard; Tomkins-Lane, ChristyThe spine journal : official journal of the North American Spine Society.2018 Jan;28962914
Citizen science applied to building healthier community environments: advancing the field through shared construct and measurement development.Hinckson, Erica; Schneider, Margaret; Winter, Sandra J; Stone, Emily; Puhan, Milo; Stathi, Afroditi; Porter, Michelle M; Gardiner, Paul A; Dos Santos, Daniela Lopes; Wolff, Andrea; King, Abby CThe international journal of behavioral nutrition and physical activity.2017 Sep 29;28962580
EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING.Zhang, Jie; Fan, Yonghui; Li, Qingyang; Thompson, Paul M; Ye, Jieping; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2017 Apr;28959379
Algorithmic Advances and Applications from RECOMB 2017.Cell systems.2017 Sep 27;28957652
GraphSpace: stimulating interdisciplinary collaborations in network biology.Bharadwaj, Aditya; Singh, Divit P; Ritz, Anna; Tegge, Allison N; Poirel, Christopher L; Kraikivski, Pavel; Adames, Neil; Luther, Kurt; Kale, Shiv D; Peccoud, Jean; Tyson, John J; Murali, T MBioinformatics (Oxford, England).2017 Oct 01;28957495
Optimizing Open-Ended Crowdsourcing: The Next Frontier in Crowdsourced Data Management.Parameswaran, Aditya; Sarma, Akash Das; Venkataraman, VipulBulletin of the Technical Committee on Data Engineering.2016 Dec;28951893
DNA repair deficiency biomarkers and the 70-gene ultra-high risk signature as predictors of veliparib/carboplatin response in the I-SPY 2 breast cancer trial.Wolf, Denise M; Yau, Christina; Sanil, Ashish; Glas, Annuska; Petricoin, Emanuel; Wulfkuhle, Julia; Severson, Tesa M; Linn, Sabine; Brown-Swigart, Lamorna; Hirst, Gillian; Buxton, Meredith; DeMichele, Angela; Hylton, Nola; Symmans, Fraser; Yee, Doug; Paoloni, Melissa; Esserman, Laura; Berry, Don; Rugo, Hope; Olopade, Olufunmilayo; van 't Veer, LauraNPJ breast cancer.2017;28948212
Topographic Regularity for Tract Filtering in Brain Connectivity.Wang, Junyan; Aydogan, Dogu Baran; Varma, Rohit; Toga, Arthur W; Shi, YonggangInformation processing in medical imaging : proceedings of the ... conference.2017 Jun;28943732
Multi-Source Multi-Target Dictionary Learning for Prediction of Cognitive Decline.Zhang, Jie; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, YalinInformation processing in medical imaging : proceedings of the ... conference.2017 Jun;28943731
Creating a data resource: what will it take to build a medical information commons?Deverka, Patricia A; Majumder, Mary A; Villanueva, Angela G; Anderson, Margaret; Bakker, Annette C; Bardill, Jessica; Boerwinkle, Eric; Bubela, Tania; Evans, Barbara J; Garrison, Nanibaa' A; Gibbs, Richard A; Gentleman, Robert; Glazer, David; Goldstein, Melissa M; Greely, Hank; Harris, Crane; Knoppers, Bartha M; Koenig, Barbara A; Kohane, Isaac S; La Rosa, Salvatore; Mattison, John; O'Donnell, Christopher J; Rai, Arti K; Rehm, Heidi L; Rodriguez, Laura L; Shelton, Robert; Simoncelli, Tania; Terry, Sharon F; Watson, Michael S; Wilbanks, John; Cook-Deegan, Robert; McGuire, Amy LGenome medicine.2017 Sep 22;28938910
The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays.Schwenk, Jochen M; Omenn, Gilbert S; Sun, Zhi; Campbell, David S; Baker, Mark S; Overall, Christopher M; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric WJournal of proteome research.2017 Dec 01;28938075
Systematic integration of biomedical knowledge prioritizes drugs for repurposing.Himmelstein, Daniel Scott; Lizee, Antoine; Hessler, Christine; Brueggeman, Leo; Chen, Sabrina L; Hadley, Dexter; Green, Ari; Khankhanian, Pouya; Baranzini, Sergio EeLife.2017 Sep 22;28936969
Enhancing Diffusion MRI Measures By Integrating Grey and White Matter Morphometry With Hyperbolic Wasserstein Distance.Zhang, Wen; Shi, Jie; Yu, Jun; Zhan, Liang; Thompson, Paul M; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2017;28936280
Periodontal-induced chronic inflammation triggers macrophage secretion of Ccl12 to inhibit fibroblast-mediated cardiac wound healing.DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ero, Osasere K; Cates, Courtney A; Flynn, Elizabeth R; Cannon, Presley L; Jung, Mira; Shannon, De'Aries; Garrett, Michael R; Buchanan, William; Hall, Michael E; Ma, Yonggang; Lindsey, Merry LJCI insight.2017 Sep 21;28931761
Precision annotation of digital samples in NCBI's gene expression omnibus.Hadley, Dexter; Pan, James; El-Sayed, Osama; Aljabban, Jihad; Aljabban, Imad; Azad, Tej D; Hadied, Mohamad O; Raza, Shuaib; Rayikanti, Benjamin Abhishek; Chen, Bin; Paik, Hyojung; Aran, Dvir; Spatz, Jordan; Himmelstein, Daniel; Panahiazar, Maryam; Bhattacharya, Sanchita; Sirota, Marina; Musen, Mark A; Butte, Atul JScientific data.2017 Sep 19;28925997
Comments on ''Personalized dose finding using outcome weighted learning''.Fan, Jun; Yuan, MingJournal of the American Statistical Association.2017;28919653
ARCHITECTURAL PATTERNS FOR DIFFERENTIAL DIAGNOSIS OF PROLIFERATIVE BREAST LESIONS FROM HISTOPATHOLOGICAL IMAGES.Nguyen, L; Tosun, A B; Fine, J L; Taylor, D L; Chennubhotla, S CProceedings. IEEE International Symposium on Biomedical Imaging.2017 Apr;28890755
Unique transcriptomic response to sepsis is observed among patients of different age groups.Raymond, Steven L; López, María Cecilia; Baker, Henry V; Larson, Shawn D; Efron, Philip A; Sweeney, Timothy E; Khatri, Purvesh; Moldawer, Lyle L; Wynn, James LPloS one.2017;28886074
Predicting multicellular function through multi-layer tissue networks.Zitnik, Marinka; Leskovec, JureBioinformatics (Oxford, England).2017 Jul 15;28881986
Modelling haplotypes with respect to reference cohort variation graphs.Rosen, Yohei; Eizenga, Jordan; Paten, BenedictBioinformatics (Oxford, England).2017 Jul 15;28881971
Using information technology to improve surveillance of antimicrobial resistance in South East Asia.Vong, Sirenda; Anciaux, Amaury; Hulth, Anette; Stelling, John; Thamlikitkul, Visanu; Gupta, Sunil; Fuks, Jonas M; Walia, K?mini; Rattanumpawan, Pinyo; Eremin, Sergey; Tisocki, Klara; Sedai, Tika R; Sharma, AnujBMJ (Clinical research ed.).2017 09 05;28874344
Phelan-McDermid syndrome data network: Integrating patient reported outcomes with clinical notes and curated genetic reports.Kothari, Cartik; Wack, Maxime; Hassen-Khodja, Claire; Finan, Sean; Savova, Guergana; O'Boyle, Megan; Bliss, Geraldine; Cornell, Andria; Horn, Elizabeth J; Davis, Rebecca; Jacobs, Jacquelyn; Kohane, Isaac; Avillach, PaulAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.2017 Sep 01;28862395
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project.Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Overall, Christopher M; Deutsch, Eric WJournal of proteome research.2017 Dec 01;28853897
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.Deutsch, Eric W; Orchard, Sandra; Binz, Pierre-Alain; Bittremieux, Wout; Eisenacher, Martin; Hermjakob, Henning; Kawano, Shin; Lam, Henry; Mayer, Gerhard; Menschaert, Gerben; Perez-Riverol, Yasset; Salek, Reza M; Tabb, David L; Tenzer, Stefan; Vizcaíno, Juan Antonio; Walzer, Mathias; Jones, Andrew RJournal of proteome research.2017 Dec 01;28849660
Apolipoprotein E Genotype and Sex Risk Factors for Alzheimer Disease: A Meta-analysis.Neu, Scott C; Pa, Judy; Kukull, Walter; Beekly, Duane; Kuzma, Amanda; Gangadharan, Prabhakaran; Wang, Li-San; Romero, Klaus; Arneric, Stephen P; Redolfi, Alberto; Orlandi, Daniele; Frisoni, Giovanni B; Au, Rhoda; Devine, Sherral; Auerbach, Sanford; Espinosa, Ana; Boada, Mercè; Ruiz, Agustín; Johnson, Sterling C; Koscik, Rebecca; Wang, Jiun-Jie; Hsu, Wen-Chuin; Chen, Yao-Liang; Toga, Arthur WJAMA neurology.2017 Oct 01;28846757
High-Definition Medicine.Torkamani, Ali; Andersen, Kristian G; Steinhubl, Steven R; Topol, Eric JCell.2017 Aug 24;28841416
Refinement by integration: aggregated effects of multimodal imaging markers on adult ADHD.Wolfers, Thomas; Arenas, Alberto Llera; Onnink, A Marten H; Dammers, Janneke; Hoogman, Martine; Zwiers, Marcel P; Buitelaar, Jan K; Franke, Barbara; Marquand, Andre F; Beckmann, Christian FJournal of psychiatry & neuroscience : JPN.2017 Nov;28832320
Long Noncoding RNA Facilitated Gene Therapy Reduces Atherosclerosis in a Murine Model of Familial Hypercholesterolemia.Tontonoz, Peter; Wu, Xiaohui; Jones, Marius; Zhang, Zhengyi; Salisbury, David; Sallam, TamerCirculation.2017 Aug 22;28827223
Anxiety-related experience-dependent white matter structural differences in adolescence: A monozygotic twin difference approach.Adluru, Nagesh; Luo, Zhan; Van Hulle, Carol A; Schoen, Andrew J; Davidson, Richard J; Alexander, Andrew L; Goldsmith, H HillScientific reports.2017 Aug 18;28821748
SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort.Rueda, Manuel; Torkamani, AliBMC bioinformatics.2017 Aug 18;28821228
D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization.Sharma, Deepak K; Solbrig, Harold R; Prud'hommeaux, Eric; Lee, Kate; Pathak, Jyotishman; Jiang, GuoqianAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2017;28815140
Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance.Emad, Amin; Cairns, Junmei; Kalari, Krishna R; Wang, Liewei; Sinha, SaurabhGenome biology.2017 Aug 11;28800781
Utility of BI-RADS Assessment Category 4 Subdivisions for Screening Breast MRI.Strigel, Roberta M; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie R; DeMartini, Wendy BAJR. American journal of roentgenology.2017 Jun;28792802
PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension.Chen, Feng; Wang, Chenghong; Dai, Wenrui; Jiang, Xiaoqian; Mohammed, Noman; Al Aziz, Md Momin; Sadat, Md Nazmus; Sahinalp, Cenk; Lauter, Kristin; Wang, ShuangBMC medical genomics.2017 Jul 26;28786365
Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoid-derived hematologic malignancies.Kurtz, Stephen E; Eide, Christopher A; Kaempf, Andy; Khanna, Vishesh; Savage, Samantha L; Rofelty, Angela; English, Isabel; Ho, Hibery; Pandya, Ravi; Bolosky, William J; Poon, Hoifung; Deininger, Michael W; Collins, Robert; Swords, Ronan T; Watts, Justin; Pollyea, Daniel A; Medeiros, Bruno C; Traer, Elie; Tognon, Cristina E; Mori, Motomi; Druker, Brian J; Tyner, Jeffrey WProceedings of the National Academy of Sciences of the United States of America.2017 Sep 05;28784769
Consistency of BRCA1 and BRCA2 Variant Classifications Among Clinical Diagnostic Laboratories.Lincoln, Stephen E; Yang, Shan; Cline, Melissa S; Kobayashi, Yuya; Zhang, Can; Topper, Scott; Haussler, David; Paten, Benedict; Nussbaum, Robert LJCO precision oncology.2017 Jul;28782058
Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data.Shin, Sunyoung; Kele?, SündüzStatistics in biosciences.2017 Jun;28781711
Association of White Matter With Core Cognitive Deficits in Patients With Schizophrenia.Kochunov, Peter; Coyle, Thomas R; Rowland, Laura M; Jahanshad, Neda; Thompson, Paul M; Kelly, Sinead; Du, Xiaoming; Sampath, Hemalatha; Bruce, Heather; Chiappelli, Joshua; Ryan, Meghann; Fisseha, Feven; Savransky, Anya; Adhikari, Bhim; Chen, Shuo; Paciga, Sara A; Whelan, Christopher D; Xie, Zhiyong; Hyde, Craig L; Chen, Xing; Schubert, Christian R; O'Donnell, Patricio; Hong, L ElliotJAMA psychiatry.2017 Sep 01;28768312
Effect of tobacco smoking on frontal cortical thickness development: A longitudinal study in a mixed cohort of ADHD-affected and -unaffected youth.Akkermans, Sophie E A; van Rooij, Daan; Rommelse, Nanda; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Mennes, Maarten; Buitelaar, Jan KEuropean neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology.2017 10;28764867
Genome-wide association analysis identifies common variants influencing infant brain volumes.Xia, K; Zhang, J; Ahn, M; Jha, S; Crowley, J J; Szatkiewicz, J; Li, T; Zou, F; Zhu, H; Hibar, D; Thompson, P; ENIGMA Consortium; Sullivan, P F; Styner, M; Gilmore, J H; Knickmeyer, R CTranslational psychiatry.2017 Aug 01;28763065
Chalcone Derivatives: Promising Starting Points for Drug Design.Gomes, Marcelo N; Muratov, Eugene N; Pereira, Maristela; Peixoto, Josana C; Rosseto, Lucimar P; Cravo, Pedro V L; Andrade, Carolina H; Neves, Bruno JMolecules (Basel, Switzerland).2017 Jul 25;28757583
Principles of Dataset Versioning: Exploring the Recreation/Storage Tradeoff.Bhattacherjee, Souvik; Chavan, Amit; Huang, Silu; Deshpande, Amol; Parameswaran, AdityaProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;28752014
Mobile Monitoring of Traumatic Brain Injury in Older Adults: Challenges and Opportunities.Irimia, Andrei; Wei, Susan; Lu, Nanshu; Moore, Constance M; Kennedy, David NNeuroinformatics.2017 Jul;28748392
Testing the comparative effects of physical activity advice by humans vs. computers in underserved populations: The COMPASS trial design, methods, and baseline characteristics.King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Garcia, Dulce; Chazaro, Aldo; Blanco, German; Hauser, Michelle; Fierros, Fernando; Ahn, David K; Diaz, Jose; Done, Monica; Fernandez, Juan; Bickmore, TimothyContemporary clinical trials.2017 Oct;28739541
Modernization of Enoxaparin Molecular Weight Determination Using Homogeneous Standards.Arnold, Katelyn M; Capuzzi, Stephen J; Xu, Yongmei; Muratov, Eugene N; Carrick, Kevin; Szajek, Anita Y; Tropsha, Alexander; Liu, JianPharmaceuticals (Basel, Switzerland).2017 Jul 22;28737679
Shallow Representation Learning via Kernel PCA Improves QSAR Modelability.Rensi, Stefano E; Altman, Russ BJournal of chemical information and modeling.;28727421
Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM.Gutierrez-Barragan, Felipe; Ithapu, Vamsi K; Hinrichs, Chris; Maumet, Camille; Johnson, Sterling C; Nichols, Thomas E; Singh, Vikas; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2017 Oct 01;28720551
Gramene Database: Navigating Plant Comparative Genomics Resources.Gupta, Parul; Naithani, Sushma; Tello-Ruiz, Marcela Karey; Chougule, Kapeel; D'Eustachio, Peter; Fabregat, Antonio; Jiao, Yinping; Keays, Maria; Lee, Young Koung; Kumari, Sunita; Mulvaney, Joseph; Olson, Andrew; Preece, Justin; Stein, Joshua; Wei, Sharon; Weiser, Joel; Huerta, Laura; Petryszak, Robert; Kersey, Paul; Stein, Lincoln D; Ware, Doreen; Jaiswal, PankajCurrent plant biology.2016 Nov;28713666
A graph extension of the positional Burrows-Wheeler transform and its applications.Novak, Adam M; Garrison, Erik; Paten, BenedictAlgorithms for molecular biology : AMB.2017;28702075
Large-scale physical activity data reveal worldwide activity inequality.Althoff, Tim; Sosi?, Rok; Hicks, Jennifer L; King, Abby C; Delp, Scott L; Leskovec, JureNature.2017 07 20;28693034
Origins of lymphatic and distant metastases in human colorectal cancer.Naxerova, Kamila; Reiter, Johannes G; Brachtel, Elena; Lennerz, Jochen K; van de Wetering, Marc; Rowan, Andrew; Cai, Tianxi; Clevers, Hans; Swanton, Charles; Nowak, Martin A; Elledge, Stephen J; Jain, Rakesh KScience (New York, N.Y.).2017 07 07;28684519
An exploration of crowdsourcing citation screening for systematic reviews.Mortensen, Michael L; Adam, Gaelen P; Trikalinos, Thomas A; Kraska, Tim; Wallace, Byron CResearch synthesis methods.2017 Jul 04;28677322
A Simple Approach to Shared Decision Making in Cancer Screening.Schrager, Sarina B; Phillips, Gina; Burnside, ElizabethFamily practice management.2017 May/Jun;28671358
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.Nadon, Celine; Van Walle, Ivo; Gerner-Smidt, Peter; Campos, Josefina; Chinen, Isabel; Concepcion-Acevedo, Jeniffer; Gilpin, Brent; Smith, Anthony M; Man Kam, Kai; Perez, Enrique; Trees, Eija; Kubota, Kristy; Takkinen, Johanna; Nielsen, Eva Møller; CarletoEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.2017 06 08;28662764
Inducing Domain-Specific Sentiment Lexicons from Unlabeled Corpora.Hamilton, William L; Clark, Kevin; Leskovec, Jure; Jurafsky, DanProceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing.2016 Nov;28660257
Machine Learning Consensus Scoring Improves Performance Across Targets in Structure-Based Virtual Screening.Ericksen, Spencer S; Wu, Haozhen; Zhang, Huikun; Michael, Lauren A; Newton, Michael A; Hoffmann, F Michael; Wildman, Scott AJournal of chemical information and modeling.2017 Jul 24;28654262
UpSetR: an R package for the visualization of intersecting sets and their properties.Conway, Jake R; Lex, Alexander; Gehlenborg, NilsBioinformatics (Oxford, England).2017 Sep 15;28645171
Predicting structured metadata from unstructured metadata.Posch, Lisa; Panahiazar, Maryam; Dumontier, Michel; Gevaert, OlivierDatabase : the journal of biological databases and curation.;28637268
Anxiety modulates the relation between attention-deficit/hyperactivity disorder severity and working memory-related brain activity.van der Meer, Dennis; Hoekstra, Pieter J; van Rooij, Daan; Winkler, Anderson M; van Ewijk, Hanneke; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Hartman, Catharina AThe world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry.2017 Mar 01;28635543
ClinVar data parsing.Zhang, Xiaolei; Minikel, Eric V; O'Donnell-Luria, Anne H; MacArthur, Daniel G; Ware, James S; Weisburd, BenWellcome open research.2017;28630944
Temporally Factorized Network Modeling for Evolutionary Network Analysis.Yu, Wenchao; Aggarwal, Charu C; Wang, WeiProceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining.2017 Feb;28626845
Big Data Analytics with Datalog Queries on Spark.Shkapsky, Alexander; Yang, Mohan; Interlandi, Matteo; Chiu, Hsuan; Condie, Tyson; Zaniolo, CarloProceedings. ACM-Sigmod International Conference on Management of Data.2016 Jun-Jul;28626296
Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO).Panahiazar, Maryam; Dumontier, Michel; Gevaert, OlivierJournal of biomedical informatics.;28625880
Psychosocial Stress and Brain Function in Adolescent Psychopathology.Quinlan, Erin Burke; Cattrell, Anna; Jia, Tianye; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Conrod, Patricia J; Desrivieres, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Glennon, Jeffrey C; Buitelaar, Jan K; Happé, Francesca; Loth, Eva; Barker, Edward D; Schumann, Gunter; IMAGEN ConsortiumThe American journal of psychiatry.2017 08 01;28618856
ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis.Zhang, Guohao; Kochunov, Peter; Hong, Elliot; Kelly, Sinead; Whelan, Christopher; Jahanshad, Neda; Thompson, Paul; Chen, JianBMC bioinformatics.2017 Jun 06;28617224
The Arf6 activator Efa6/PSD3 confers regional specificity and modulates ethanol consumption in Drosophila and humans.Gonzalez, D A; Jia, T; Pinzón, J H; Acevedo, S F; Ojelade, S A; Xu, B; Tay, N; Desrivières, S; Hernandez, J L; Banaschewski, T; Büchel, C; Bokde, A L W; Conrod, P J; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P A; Heinz, A; Ittermann, B; Lathrop, M; Martinot, J-L; Paus, T; Smolka, M N; IMAGEN Consortium; Rodan, A R; Schumann, G; Rothenfluh, AMolecular psychiatry.2017 Jun 13;28607459
Association of longitudinal white matter degeneration and cerebrospinal fluid biomarkers of neurodegeneration, inflammation and Alzheimer's disease in late-middle-aged adults.Racine, Annie M; Merluzzi, Andrew P; Adluru, Nagesh; Norton, Derek; Koscik, Rebecca L; Clark, Lindsay R; Berman, Sara E; Nicholas, Christopher R; Asthana, Sanjay; Alexander, Andrew L; Blennow, Kaj; Zetterberg, Henrik; Kim, Won Hwa; Singh, Vikas; Carlsson, Cynthia M; Bendlin, Barbara B; Johnson, Sterling CBrain imaging and behavior.2017 Jun 09;28600739
Female-specific association of NOS1 genotype with white matter microstructure in ADHD patients and controls.van Ewijk, Hanneke; Bralten, Janita; van Duin, Esther D A; Hakobjan, Marina; Buitelaar, Jan K; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina; Hoogman, Martine; Oosterlaan, Jaap; Franke, BarbaraJournal of child psychology and psychiatry, and allied disciplines.2017 Aug;28589541
Predicting attention-deficit/hyperactivity disorder severity from psychosocial stress and stress-response genes: a random forest regression approach.van der Meer, D; Hoekstra, P J; van Donkelaar, M; Bralten, J; Oosterlaan, J; Heslenfeld, D; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C ATranslational psychiatry.2017 Jun 06;28585928
Dead simple OWL design patterns.Osumi-Sutherland, David; Courtot, Melanie; Balhoff, James P; Mungall, ChristopherJournal of biomedical semantics.2017 Jun 05;28583177
QSAR-driven design, synthesis and discovery of potent chalcone derivatives with antitubercular activity.Gomes, Marcelo N; Braga, Rodolpho C; Grzelak, Edyta M; Neves, Bruno J; Muratov, Eugene; Ma, Rui; Klein, Larry L; Cho, Sanghyun; Oliveira, Guilherme R; Franzblau, Scott G; Andrade, Carolina HortaEuropean journal of medicinal chemistry.2017 May 10;28582669
Genetic influences on individual differences in longitudinal changes in global and subcortical brain volumes: Results of the ENIGMA plasticity working group.Brouwer, Rachel M; Panizzon, Matthew S; Glahn, David C; Hibar, Derrek P; Hua, Xue; Jahanshad, Neda; Abramovic, Lucija; de Zubicaray, Greig I; Franz, Carol E; Hansell, Narelle K; Hickie, Ian B; Koenis, Marinka M G; Martin, Nicholas G; Mather, Karen A; McMahon, Katie L; Schnack, Hugo G; Strike, Lachlan T; Swagerman, Suzanne C; Thalamuthu, Anbupalam; Wen, Wei; Gilmore, John H; Gogtay, Nitin; Kahn, René S; Sachdev, Perminder S; Wright, Margaret J; Boomsma, Dorret I; Kremen, William S; Thompson, Paul M; Hulshoff Pol, Hilleke EHuman brain mapping.2017 Sep;28580697
Cultural Shift or Linguistic Drift? Comparing Two Computational Measures of Semantic Change.Hamilton, William L; Leskovec, Jure; Jurafsky, DanProceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing.2016 Nov;28580459
A review of active learning approaches to experimental design for uncovering biological networks.Sverchkov, Yuriy; Craven, MarkPLoS computational biology.2017 Jun;28570593
Structure-Leveraged Methods in Breast Cancer Risk Prediction.Fan, Jun; Wu, Yirong; Yuan, Ming; Page, David; Liu, Jie; Ong, Irene M; Peissig, Peggy; Burnside, ElizabethJournal of machine learning research : JMLR.2016 Dec;28559747
Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics.Barger, Jamie L; Vann, James M; Cray, Nicole L; Pugh, Thomas D; Mastaloudis, Angela; Hester, Shelly N; Wood, Steven M; Newton, Michael A; Weindruch, Richard; Prolla, Tomas AAging cell.2017 Aug;28556428
VISAGE: Interactive Visual Graph Querying.Pienta, Robert; Navathe, Shamkant; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen HorngAVI : proceedings of the Workshop on Advanced Visual Interfaces. AVI (Conference).2016 Jun;28553670
Statistical Methods for Latent Class Quantitative Trait Loci Mapping.Ye, Shuyun; Bacher, Rhonda; Keller, Mark P; Attie, Alan D; Kendziorski, ChristinaGenetics.2017 07;28550015
Prefrontal cortical thinning links to negative symptoms in schizophrenia via the ENIGMA consortium.Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Morch-Johnsen, L; Færden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Jahanshad, N; De Rossi, P; Piras, F; Banaj, N; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, SPsychological medicine.2018 Jan;28545597
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.Bernstein, Matthew N; Doan, AnHai; Dewey, Colin NBioinformatics (Oxford, England).2017 Sep 15;28535296
Using high-resolution variant frequencies to empower clinical genome interpretation.Whiffin, Nicola; Minikel, Eric; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel; Ware, James SGenetics in medicine : official journal of the American College of Medical Genetics.2017 Oct;28518168
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics.Vizcaíno, Juan Antonio; Mayer, Gerhard; Perkins, Simon; Barsnes, Harald; Vaudel, Marc; Perez-Riverol, Yasset; Ternent, Tobias; Uszkoreit, Julian; Eisenacher, Martin; Fischer, Lutz; Rappsilber, Juri; Netz, Eugen; Walzer, Mathias; Kohlbacher, Oliver; Leitner, Alexander; Chalkley, Robert J; Ghali, Fawaz; Martínez-Bartolomé, Salvador; Deutsch, Eric W; Jones, Andrew RMolecular & cellular proteomics : MCP.2017 Jul;28515314
Diverging volumetric trajectories following pediatric traumatic brain injury.Dennis, Emily L; Faskowitz, Joshua; Rashid, Faisal; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Jahanshad, Neda; Thompson, Paul M; Asarnow, Robert FNeuroImage. Clinical.2017;28507895
Heritability of Hippocampal Formation Sub-region Volumes.Greenspan, Kiefer S; Arakelian, Claire R; van Erp, Theo G MJournal of neurology and neuroscience.2016;28503392
L1-Regularized Least Squares for Support Recovery of High Dimensional Single Index Models with Gaussian Designs.Neykov, Matey; Liu, Jun S; Cai, TianxiJournal of machine learning research : JMLR.2016 May;28503101
Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions.Xia, Yin; Cai, Tianxi; Cai, T TonyBiometrika.2015 Jun;28502988
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.Jagodnik, Kathleen M; Koplev, Simon; Jenkins, Sherry L; Ohno-Machado, Lucila; Paten, Benedict; Schurer, Stephan C; Dumontier, Michel; Verborgh, Ruben; Bui, Alex; Ping, Peipei; McKenna, Neil J; Madduri, Ravi; Pillai, Ajay; Ma'ayan, AviJournal of biomedical informatics.2017 07;28501646
Continuous representations of brain connectivity using spatial point processes.Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul MMedical image analysis.2017 Oct;28487128
Discovering and linking public omics data sets using the Omics Discovery Index.Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; Hermjakob, HenningNature biotechnology.2017 05 09;28486464
Deep learning for healthcare: review, opportunities and challenges.Miotto, Riccardo; Wang, Fei; Wang, Shuang; Jiang, Xiaoqian; Dudley, Joel TBriefings in bioinformatics.2017 May 06;28481991
Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.Kleffner, Robert; Flatten, Jeff; Leaver-Fay, Andrew; Baker, David; Siegel, Justin B; Khatib, Firas; Cooper, SethBioinformatics (Oxford, England).2017 Sep 01;28481970
Experimental Design on a Budget for Sparse Linear Models and Applications.Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Singh, VikasJMLR workshop and conference proceedings.2016 Jun;28479945
Widespread Allelic Heterogeneity in Complex Traits.Hormozdiari, Farhad; Zhu, Anthony; Kichaev, Gleb; Ju, Chelsea J-T; Segrè, Ayellet V; Joo, Jong Wha J; Won, Hyejung; Sankararaman, Sriram; Pasaniuc, Bogdan; Shifman, Sagiv; Eskin, EleazarAmerican journal of human genetics.2017 May 04;28475861
Associations of the Intellectual Disability Gene MYT1L with Helix-Loop-Helix Gene Expression, Hippocampus Volume and Hippocampus Activation During Memory Retrieval.Kepa, Agnieszka; Martinez Medina, Lourdes; Erk, Susanne; Srivastava, Deepak P; Fernandes, Alinda; Toro, Roberto; Lévi, Sabine; Ruggeri, Barbara; Fernandes, Cathy; Degenhardt, Franziska; Witt, Stephanie H; Meyer-Lindenberg, Andreas; Poncer, Jean-Christophe; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Müller, Christian P; Heinz, Andreas; Walter, Henrik; Schumann, Gunter; Desrivières, SylvaneNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.2017 Dec;28470180
Subcortical brain structure and suicidal behaviour in major depressive disorder: a meta-analysis from the ENIGMA-MDD working group.Rentería, M E; Schmaal, L; Hibar, D P; Couvy-Duchesne, B; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hatton, S N; Lagopoulos, J; Veltman, D J; van der Wee, N; van Erp, T G M; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Godlewska, B R; Cowen, P J; Penninx, B W J H; Jahanshad, N; Thompson, P M; Wright, M J; Martin, N G; Christensen, H; Hickie, I BTranslational psychiatry.2017 May 02;28463239
Connectome imaging for mapping human brain pathways.Shi, Y; Toga, A WMolecular psychiatry.2017 Sep;28461700
Cortical abnormalities in bipolar disorder: an MRI analysis of 6503 individuals from the ENIGMA Bipolar Disorder Working Group.Hibar, D P; Westlye, L T; Doan, N T; Jahanshad, N; Cheung, J W; Ching, C R K; Versace, A; Bilderbeck, A C; Uhlmann, A; Mwangi, B; Krämer, B; Overs, B; Hartberg, C B; Abé, C; Dima, D; Grotegerd, D; Sprooten, E; Bøen, E; Jimenez, E; Howells, F M; Delvecchio, G; Temmingh, H; Starke, J; Almeida, J R C; Goikolea, J M; Houenou, J; Beard, L M; Rauer, L; Abramovic, L; Bonnin, M; Ponteduro, M F; Keil, M; Rive, M M; Yao, N; Yalin, N; Najt, P; Rosa, P G; Redlich, R; Trost, S; Hagenaars, S; Fears, S C; Alonso-Lana, S; van Erp, T G M; Nickson, T; Chaim-Avancini, T M; Meier, T B; Elvsåshagen, T; Haukvik, U K; Lee, W H; Schene, A H; Lloyd, A J; Young, A H; Nugent, A; Dale, A M; Pfennig, A; McIntosh, A M; Lafer, B; Baune, B T; Ekman, C J; Zarate, C A; Bearden, C E; Henry, C; Simhandl, C; McDonald, C; Bourne, C; Stein, D J; Wolf, D H; Cannon, D M; Glahn, D C; Veltman, D J; Pomarol-Clotet, E; Vieta, E; Canales-Rodriguez, E J; Nery, F G; Duran, F L S; Busatto, G F; Roberts, G; Pearlson, G D; Goodwin, G M; Kugel, H; Whalley, H C; Ruhe, H G; Soares, J C; Fullerton, J M; Rybakowski, J K; Savitz, J; Chaim, K T; Fatjó-Vilas, M; Soeiro-de-Souza, M G; Boks, M P; Zanetti, M V; Otaduy, M C G; Schaufelberger, M S; Alda, M; Ingvar, M; Phillips, M L; Kempton, M J; Bauer, M; Landén, M; Lawrence, N S; van Haren, N E M; Horn, N R; Freimer, N B; Gruber, O; Schofield, P R; Mitchell, P B; Kahn, R S; Lenroot, R; Machado-Vieira, R; Ophoff, R A; Sarró, S; Frangou, S; Satterthwaite, T D; Hajek, T; Dannlowski, U; Malt, U F; Arolt, V; Gattaz, W F; Drevets, W C; Caseras, X; Agartz, I; Thompson, P M; Andreassen, O AMolecular psychiatry.2017 May 02;28461699
IL-10 improves cardiac remodeling after myocardial infarction by stimulating M2 macrophage polarization and fibroblast activation.Jung, Mira; Ma, Yonggang; Iyer, Rugmani Padmanabhan; DeLeon-Pennell, Kristine Y; Yabluchanskiy, Andriy; Garrett, Michael R; Lindsey, Merry LBasic research in cardiology.2017 May;28439731
The C677T variant in MTHFR modulates associations between brain integrity, mood, and cognitive functioning in old age.Roussotte, Florence F; Hua, Xue; Narr, Katherine L; Small, Gary W; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeBiological psychiatry. Cognitive neuroscience and neuroimaging.2017 Apr;28435933
Computer-aided discovery of two novel chalcone-like compounds active and selective against Leishmania infantum.Gomes, Marcelo N; Alcântara, Laura M; Neves, Bruno J; Melo-Filho, Cleber C; Freitas-Junior, Lucio H; Moraes, Carolina B; Ma, Rui; Franzblau, Scott G; Muratov, Eugene; Andrade, Carolina HortaBioorganic & medicinal chemistry letters.2017 Jun 01;28434763
Emerging Global Initiatives in Neurogenetics: The Enhancing Neuroimaging Genetics through Meta-analysis (ENIGMA) Consortium.Bearden, Carrie E; Thompson, Paul MNeuron.2017 Apr 19;28426957
Association of Patient Age With Outcomes of Current-Era, Large-Scale Screening Mammography: Analysis of Data From the National Mammography Database.Lee, Cindy S; Sengupta, Debapriya; Bhargavan-Chatfield, Mythreyi; Sickles, Edward A; Burnside, Elizabeth S; Zuley, Margarita LJAMA oncology.2017 Aug 01;28426842
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes.Roy, Sushmita; Sridharan, RupaGenome research.2017 Jul;28424352
Progressive Dictionary Learning with Hierarchical Predictive Structure for Scalable Video Coding.Dai, Wenrui; Shen, Yangmei; Xiong, Hongkai; Jiang, Xiaoqian; Zou, Junni; Taubman, DavidIEEE transactions on image processing : a publication of the IEEE Signal Processing Society.2017 Apr 12;28422683
Validation of the Sepsis MetaScore for Diagnosis of Neonatal Sepsis.Sweeney, Timothy E; Wynn, James L; Cernada, María; Serna, Eva; Wong, Hector R; Baker, Henry V; Vento, Máximo; Khatri, PurveshJournal of the Pediatric Infectious Diseases Society.2017 Apr 13;28419265
SCnorm: robust normalization of single-cell RNA-seq data.Bacher, Rhonda; Chu, Li-Fang; Leng, Ning; Gasch, Audrey P; Thomson, James A; Stewart, Ron M; Newton, Michael; Kendziorski, ChristinaNature methods.2017 Jun;28418000
Noise-induced symmetry breaking far from equilibrium and the emergence of biological homochirality.Jafarpour, Farshid; Biancalani, Tommaso; Goldenfeld, NigelPhysical review. E.2017 Mar;28415353
Matrix Metalloproteinases in Myocardial Infarction and Heart Failure.DeLeon-Pennell, Kristine Y; Meschiari, Cesar A; Jung, Mira; Lindsey, Merry LProgress in molecular biology and translational science.2017;28413032
Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides?Alves, Vinicius M; Muratov, Eugene N; Zakharov, Alexey; Muratov, Nail N; Andrade, Carolina H; Tropsha, AlexanderFood and chemical toxicology : an international journal published for the British Industrial Biological Research Association.2017 Apr 12;28412406
Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis.Agniel, Denis; Cai, TianxiBiometrics.2017 Dec;28407213
Optimizing Interactive Development of Data-Intensive Applications.Interlandi, Matteo; Tetali, Sai Deep; Gulzar, Muhammad Ali; Noor, Joseph; Condie, Tyson; Kim, Miryung; Millstein, ToddProceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference).2016 Oct;28405637
Toil enables reproducible, open source, big biomedical data analyses.Vivian, John; Rao, Arjun Arkal; Nothaft, Frank Austin; Ketchum, Christopher; Armstrong, Joel; Novak, Adam; Pfeil, Jacob; Narkizian, Jake; Deran, Alden D; Musselman-Brown, Audrey; Schmidt, Hannes; Amstutz, Peter; Craft, Brian; Goldman, Mary; Rosenbloom, Kate; Cline, Melissa; O'Connor, Brian; Hanna, Megan; Birger, Chet; Kent, W James; Patterson, David A; Joseph, Anthony D; Zhu, Jingchun; Zaranek, Sasha; Getz, Gad; Haussler, David; Paten, BenedictNature biotechnology.2017 Apr 11;28398314
EFhd2/Swiprosin-1 is a common genetic determinator for sensation-seeking/low anxiety and alcohol addiction.Mielenz, D; Reichel, M; Jia, T; Quinlan, E B; Stöckl, T; Mettang, M; Zilske, D; Kirmizi-Alsan, E; Schönberger, P; Praetner, M; Huber, S E; Amato, D; Schwarz, M; Purohit, P; Brachs, S; Spranger, J; Hess, A; Büttner, C; Ekici, A B; Perez-Branguli, F; Winner, B; Rauschenberger, V; Banaschewski, T; Bokde, A L W; Büchel, C; Conrod, P J; Desrivières, S; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Lemaitre, H; Nees, F; Paus, T; Smolka, M N; IMAGEN Consortium; Schambony, A; Bäuerle, T; Eulenburg, V; Alzheimer, C; Lourdusamy, A; Schumann, G; Müller, C PMolecular psychiatry.2018 May;28397836
A million variables and more: the Fast Greedy Equivalence Search algorithm for learning high-dimensional graphical causal models, with an application to functional magnetic resonance images.Ramsey, Joseph; Glymour, Madelyn; Sanchez-Romero, Ruben; Glymour, ClarkInternational journal of data science and analytics.2017 Mar;28393106
Shape Analysis with Hyperbolic Wasserstein Distance.Shi, Jie; Zhang, Wen; Wang, YalinProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2016 Jun;28392672
Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data.Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, DavidIJCAI : proceedings of the conference.2016 Jul;28392671
Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses.Baker, K S; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, H M; Guzmán-Verri, C; Mather, A E; Diaz Velasco, S; Zamudio Rojas, M L; Forbester, J L; Connor, T R; Keddy, K H; Smith, A M; López de Delgado, E A; AnClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.2017 Nov;28389276
Combining clinical and genomics queries using i2b2 - Three methods.Murphy, Shawn N; Avillach, Paul; Bellazzi, Riccardo; Phillips, Lori; Gabetta, Matteo; Eran, Alal; McDuffie, Michael T; Kohane, Isaac SPloS one.2017;28388645
Mutation of WIF1: a potential novel cause of a Nail-Patella-like disorder.Jones, Marilyn C; Topol, Sarah E; Rueda, Manuel; Oliveira, Glenn; Phillips, Tierney; Spencer, Emily G; Torkamani, AliGenetics in medicine : official journal of the American College of Medical Genetics.2017 Oct;28383544
Structuring supplemental materials in support of reproducibility.Greenbaum, Dov; Rozowsky, Joel; Stodden, Victoria; Gerstein, MarkGenome biology.2017 Apr 05;28381262
Positive symptoms associate with cortical thinning in the superior temporal gyrus via the ENIGMA Schizophrenia consortium.Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; Van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Mørch-Johnsen, L; Faerden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Preda, A; De Rossi, P; Piras, F; Banaj, N; Ciullo, V; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, SActa psychiatrica Scandinavica.2017 May;28369804
Envisioning the Future of 'Big Data' Biomedicine.Bui, Alex A T; Darrell Van Horn, John; NIH BD2K Centers ConsortiumJournal of biomedical informatics.2017 Mar 30;28366789
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.Putman, Tim E; Lelong, Sebastien; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Diesh, Colin; Dunn, Nathan; Munoz-Torres, Monica; Stupp, Gregory S; Wu, Chunlei; Su, Andrew I; Good, Benjamin MDatabase : the journal of biological databases and curation.2017 Jan 01;28365742
Cardiac Fibroblast Activation Post-Myocardial Infarction: Current Knowledge Gaps.Ma, Yonggang; Iyer, Rugmani Padmanabhan; Jung, Mira; Czubryt, Michael P; Lindsey, Merry LTrends in pharmacological sciences.2017 May;28365093
An algorithm for direct causal learning of influences on patient outcomes.Rathnam, Chandramouli; Lee, Sanghoon; Jiang, XiaArtificial intelligence in medicine.2017 Jan;28363452
Revealing common disease mechanisms shared by tumors of different tissues of origin through semantic representation of genomic alterations and topic modeling.Chen, Vicky; Paisley, John; Lu, XinghuaBMC genomics.2017 03 14;28361690
Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine.Ping, Peipei; Watson, Karol; Han, Jiawei; Bui, AlexCirculation research.2017 Mar 31;28360346
Genome graphs and the evolution of genome inference.Paten, Benedict; Novak, Adam M; Eizenga, Jordan M; Garrison, ErikGenome research.2017 May;28360232
Binary Classifier Calibration Using an Ensemble of Linear Trend Estimation.Naeini, Mahdi Pakdaman; Cooper, Gregory FProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2016 May;28357158
Online Actions with Offline Impact: How Online Social Networks Influence Online and Offline User Behavior.Althoff, Tim; Jindal, Pranav; Leskovec, JureProceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining.2017 Feb;28345078
Large-scale Analysis of Counseling Conversations: An Application of Natural Language Processing to Mental Health.Althoff, Tim; Clark, Kevin; Leskovec, JureTransactions of the Association for Computational Linguistics.2016;28344978
SNAP: A General Purpose Network Analysis and Graph Mining Library.Leskovec, Jure; Sosi?, RokACM transactions on intelligent systems and technology.2016 Oct;28344853
Ensuring Rapid Mixing and Low Bias for Asynchronous Gibbs Sampling.De Sa, Christopher; Olukotun, Kunle; Ré, ChristopherJMLR workshop and conference proceedings.2016;28344730
Control Engineering Methods for the Design of Robust Behavioral Treatments.Bekiroglu, Korkut; Lagoa, Constantino; Murphy, Suzan A; Lanza, Stephanie TIEEE transactions on control systems technology : a publication of the IEEE Control Systems Society.2017 May;28344431
Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much.He, Bryan; De Sa, Christopher; Mitliagkas, Ioannis; Ré, ChristopherAdvances in neural information processing systems.2016;28344429
DeepDive: Declarative Knowledge Base Construction.De Sa, Christopher; Ratner, Alex; Ré, Christopher; Shin, Jaeho; Wang, Feiran; Wu, Sen; Zhang, CeSIGMOD record.2016 Mar;28344371
Privacy and Security in Mobile Health: A Research Agenda.Kotz, David; Gunter, Carl A; Kumar, Santosh; Weiner, Jonathan PComputer.2016 Jun;28344359
Muscle-tendon mechanics explain unexpected effects of exoskeleton assistance on metabolic rate during walking.Jackson, Rachel W; Dembia, Christopher L; Delp, Scott L; Collins, Steven HThe Journal of experimental biology.2017 Jun 01;28341663
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.Raisaro, Jean Louis; Tramèr, Florian; Ji, Zhanglong; Bu, Diyue; Zhao, Yongan; Carey, Knox; Lloyd, David; Sofia, Heidi; Baker, Dixie; Flicek, Paul; Shringarpure, Suyash; Bustamante, Carlos; Wang, Shuang; Jiang, Xiaoqian; Ohno-Machado, Lucila; Tang, Haixu; Wang, XiaoFeng; Hubaux, Jean-PierreJournal of the American Medical Informatics Association : JAMIA.2017 Jul 01;28339683
Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings.Sauerwald, Natalie; Zhang, She; Kingsford, Carl; Bahar, IvetNucleic acids research.2017 Apr 20;28334818
Use of WHONET-SaTScan system for simulated real-time detection of antimicrobial resistance clusters in a hospital in Italy, 2012 to 2014.Natale, Alessandra; Stelling, John; Meledandri, Marcello; Messenger, Louisa A; D'Ancona, FortunatoEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.2017 Mar 16;28333615
Network analysis: a novel method for mapping neonatal acute transport patterns in California.Kunz, S N; Zupancic, J A F; Rigdon, J; Phibbs, C S; Lee, H C; Gould, J B; Leskovec, J; Profit, JJournal of perinatology : official journal of the California Perinatal Association.2017 Jun;28333155
Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images.Nguyen, Luong; Tosun, Akif Burak; Fine, Jeffrey L; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S ChakraIEEE transactions on medical imaging.2017 Jul;28328502
Liberal Entity Extraction: Rapid Construction of Fine-Grained Entity Typing Systems.Huang, Lifu; May, Jonathan; Pan, Xiaoman; Ji, Heng; Ren, Xiang; Han, Jiawei; Zhao, Lin; Hendler, James ABig data.2017 03;28328252
Functional Neuroimaging Predictors of Self-Reported Psychotic Symptoms in Adolescents.Bourque, Josiane; Spechler, Philip A; Potvin, Stéphane; Whelan, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère-Martinot, Marie-Laure; McEwen, Sarah C; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Conrod, Patricia J; IMAGEN ConsortiumThe American journal of psychiatry.2017 06 01;28320226
Programming and Runtime Support to Blaze FPGA Accelerator Deployment at Datacenter Scale.Huang, Muhuan; Wu, Di; Yu, Cody Hao; Fang, Zhenman; Interlandi, Matteo; Condie, Tyson; Cong, JasonProceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference).2016 Oct;28317049
Computational Drug Repositioning Using Continuous Self-Controlled Case Series.Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, DavidKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;28316874
Binary Classifier Calibration using an Ensemble of Near Isotonic Regression Models.Naeini, Mahdi Pakdaman; Cooper, Gregory FProceedings. IEEE International Conference on Data Mining.2016 Dec;28316511
Extracting Databases from Dark Data with DeepDive.Zhang, Ce; Shin, Jaeho; Ré, Christopher; Cafarella, Michael; Niu, FengProceedings. ACM-Sigmod International Conference on Management of Data.2016 Jun-Jul;28316365
The impact of aging on cardiac extracellular matrix.Meschiari, Cesar A; Ero, Osasere Kelvin; Pan, Haihui; Finkel, Toren; Lindsey, Merry LGeroScience.2017 Feb;28299638
Diverging white matter trajectories in children after traumatic brain injury: The RAPBI study.Dennis, Emily L; Rashid, Faisal; Ellis, Monica U; Babikian, Talin; Vlasova, Roza M; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FNeurology.2017 Apr 11;28298549
Augmented estimation for t-year survival with censored regression models.Zheng, Yu; Cai, TianxiBiometrics.2017 Dec;28294286
The authors reply.Sweeney, Timothy E; Khatri, PurveshCritical care medicine.2017 Apr;28291107
Laissez-Faire : Fully Asymmetric Backscatter Communication.Hu, Pan; Zhang, Pengyu; Ganesan, DeepakProceedings of ACM SIGCOMM ... Conference. ACM SIGCOMM Conference.2015 Aug;28286885
HSPA5 Gene encoding Hsp70 chaperone BiP in the endoplasmic reticulum.Wang, Jie; Lee, Jessica; Liem, David; Ping, PeipeiGene.2017 Jun 30;28286085
Measurement Error and Causal Discovery.Scheines, Richard; Ramsey, JosephCEUR workshop proceedings.2016 Jun;28280453
Sequence robust association test for familial data.Dai, Wei; Yang, Ming; Wang, Chaolong; Cai, TianxiBiometrics.2017 09;28273695
Modeling the Temporal Evolution of Postoperative Complications.Feld, Shara I; Cobian, Alexander G; Tevis, Sarah E; Kennedy, Gregory D; Craven, Mark WAMIA ... Annual Symposium proceedings. AMIA Symposium.2016;28269851
An Extended SNOMED CT Concept Model for Observations in Molecular Genetics.Campbell, James R; Talmon, Geoffrey; Cushman-Vokoun, Allison; Karlsson, Daniel; Scott Campbell, WAMIA ... Annual Symposium proceedings. AMIA Symposium.2016;28269830
Fractional anisotropy derived from the diffusion tensor distribution function boosts power to detect Alzheimer's disease deficits.Nir, Talia M; Jahanshad, Neda; Villalon-Reina, Julio E; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Zhan, Liang; Leow, Alex D; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Diseaase Neuroimaginng Initiative (ADNI)Magnetic resonance in medicine.2017 Dec;28266059
Latent Variable Graphical Model Selection using Harmonic Analysis: Applications to the Human Connectome Project (HCP).Kim, Won Hwa; Kim, Hyunwoo J; Adluru, Nagesh; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2016 Jun;28255221
Mammography Screening: Gaps in Patient's and Physician's Needs for Shared Decision-Making.DuBenske, Lori L; Schrager, Sarina; McDowell, Helene; Wilke, Lee G; Trentham-Dietz, Amy; Burnside, Elizabeth SThe breast journal.2017 Mar;28252231
Analytic Complexity and Challenges in Identifying Mixtures of Exposures Associated with Phenotypes in the Exposome Era.Patel, Chirag JCurrent epidemiology reports.2017;28251040
Reactome pathway analysis: a high-performance in-memory approach.Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Forner, Oscar; Marin-Garcia, Pablo; Arnau, Vicente; D'Eustachio, Peter; Stein, Lincoln; Hermjakob, HenningBMC bioinformatics.2017 Mar 02;28249561
Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation.Rahmani, Elior; Zaitlen, Noah; Baran, Yael; Eng, Celeste; Hu, Donglei; Galanter, Joshua; Oh, Sam; Burchard, Esteban G; Eskin, Eleazar; Zou, James; Halperin, EranNature methods.2017 Feb 28;28245214
Reproducibility of tract-based white matter microstructural measures using the ENIGMA-DTI protocol.Acheson, Ashley; Wijtenburg, S Andrea; Rowland, Laura M; Winkler, Anderson; Mathias, Charles W; Hong, L Elliot; Jahanshad, Neda; Patel, Binish; Thompson, Paul M; McGuire, Stephen A; Sherman, Paul M; Kochunov, Peter; Dougherty, Donald MBrain and behavior.2017 02;28239525
A Hybrid Causal Search Algorithm for Latent Variable Models.Ogarrio, Juan Miguel; Spirtes, Peter; Ramsey, JoeJMLR workshop and conference proceedings.2016 Aug;28239434
Domain Adaptation with Conditional Transferable Components.Gong, Mingming; Zhang, Kun; Liu, Tongliang; Tao, Dacheng; Glymour, Clark; Schölkopf, BernhardJMLR workshop and conference proceedings.2016 Jun;28239433
Inattention and Reaction Time Variability Are Linked to Ventromedial Prefrontal Volume in Adolescents.Albaugh, Matthew D; Orr, Catherine; Chaarani, Bader; Althoff, Robert R; Allgaier, Nicholas; D'Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Penttila, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra SBiological psychiatry.2017 Nov 01;28237458
Physical performance analysis: A new approach to assessing free-living physical activity in musculoskeletal pain and mobility-limited populations.Smuck, Matthew; Tomkins-Lane, Christy; Ith, Ma Agnes; Jarosz, Renata; Kao, Ming-Chih JeffreyPloS one.2017;28235039
Effects of dopaminergic genes, prenatal adversities, and their interaction on attention-deficit/hyperactivity disorder and neural correlates of response inhibition.van der Meer, Dennis; Hartman, Catharina A; van Rooij, Daan; Franke, Barbara; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Buitelaar, Jan K; Hoekstra, Pieter JJournal of psychiatry & neuroscience : JPN.2017 Mar;28234207
Data-Driven Contextual Valence Shifter Quantification for Multi-Theme Sentiment Analysis.Yu, Hongkun; Shang, Jingbo; Hsu, Meichun; Castellanos, Malú; Han, JiaweiProceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management.2016 Oct;28232874
Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group.BRAINS (Brain Imaging in Normal Subjects) Expert Working Group; Shenkin, Susan D; Pernet, Cyril; Nichols, Thomas E; Poline, Jean-Baptiste; Matthews, Paul M; van der Lugt, Aad; Mackay, Clare; Lanyon, Linda; Mazoyer, Bernard; Boardman, James P; Thompson, Paul M; Fox, Nick; Marcus, Daniel S; Sheikh, Aziz; Cox, Simon R; Anblagan, Devasuda; Job, Dominic E; Dickie, David Alexander; Rodriguez, David; Wardlaw, Joanna MNeuroImage.2017 Jun;28232121
Biologically Relevant Heterogeneity: Metrics and Practical Insights.Gough, Albert; Stern, Andrew M; Maier, John; Lezon, Timothy; Shun, Tong-Ying; Chennubhotla, Chakra; Schurdak, Mark E; Haney, Steven A; Taylor, D LansingSLAS discovery.2017 Mar;28231035
Pathogenic ASXL1 somatic variants in reference databases complicate germline variant interpretation for Bohring-Opitz Syndrome.Carlston, Colleen M; O'Donnell-Luria, Anne H; Underhill, Hunter R; Cummings, Beryl B; Weisburd, Ben; Minikel, Eric V; Birnbaum, Daniel P; Exome Aggregation Consortium; Tvrdik, Tatiana; MacArthur, Daniel G; Mao, RongHuman mutation.2017 May;28229513
Representing Documents via Latent Keyphrase Inference.Liu, Jialu; Ren, Xiang; Shang, Jingbo; Cassidy, Taylor; Voss, Clare R; Han, JiaweiProceedings of the ... International World-Wide Web Conference. International WWW Conference.2016 Apr;28229132
Chemoproteomic profiling and discovery of protein electrophiles in human cells.Matthews, Megan L; He, Lin; Horning, Benjamin D; Olson, Erika J; Correia, Bruno E; Yates 3rd, John R; Dawson, Philip E; Cravatt, Benjamin FNature chemistry.2017 Mar;28221344
Subcortical brain volume differences in participants with attention deficit hyperactivity disorder in children and adults: a cross-sectional mega-analysis.Hoogman, Martine; Bralten, Janita; Hibar, Derrek P; Mennes, Maarten; Zwiers, Marcel P; Schweren, Lizanne S J; van Hulzen, Kimm J E; Medland, Sarah E; Shumskaya, Elena; Jahanshad, Neda; Zeeuw, Patrick de; Szekely, Eszter; Sudre, Gustavo; Wolfers, Thomas; Onnink, Alberdingk M H; Dammers, Janneke T; Mostert, Jeanette C; Vives-Gilabert, Yolanda; Kohls, Gregor; Oberwelland, Eileen; Seitz, Jochen; Schulte-Rüther, Martin; Ambrosino, Sara; Doyle, Alysa E; Høvik, Marie F; Dramsdahl, Margaretha; Tamm, Leanne; van Erp, Theo G M; Dale, Anders; Schork, Andrew; Conzelmann, Annette; Zierhut, Kathrin; Baur, Ramona; McCarthy, Hazel; Yoncheva, Yuliya N; Cubillo, Ana; Chantiluke, Kaylita; Mehta, Mitul A; Paloyelis, Yannis; Hohmann, Sarah; Baumeister, Sarah; Bramati, Ivanei; Mattos, Paulo; Tovar-Moll, Fernanda; Douglas, Pamela; Banaschewski, Tobias; Brandeis, Daniel; Kuntsi, Jonna; Asherson, Philip; Rubia, Katya; Kelly, Clare; Martino, Adriana Di; Milham, Michael P; Castellanos, Francisco X; Frodl, Thomas; Zentis, Mariam; Lesch, Klaus-Peter; Reif, Andreas; Pauli, Paul; Jernigan, Terry L; Haavik, Jan; Plessen, Kerstin J; Lundervold, Astri J; Hugdahl, Kenneth; Seidman, Larry J; Biederman, Joseph; Rommelse, Nanda; Heslenfeld, Dirk J; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Polier, Georg von; Konrad, Kerstin; Vilarroya, Oscar; Ramos-Quiroga, Josep Antoni; Soliva, Joan Carles; Durston, Sarah; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Thompson, Paul M; Franke, BarbaraThe lancet. Psychiatry.2017 Apr;28219628
Mapping DNA methylation with high-throughput nanopore sequencing.Rand, Arthur C; Jain, Miten; Eizenga, Jordan M; Musselman-Brown, Audrey; Olsen, Hugh E; Akeson, Mark; Paten, BenedictNature methods.2017 Apr;28218897
Estimating Causal Effects with Ancestral Graph Markov Models.Malinsky, Daniel; Spirtes, PeterJMLR workshop and conference proceedings.2016 Aug;28217244
Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx).Solbrig, Harold R; Prud'hommeaux, Eric; Grieve, Grahame; McKenzie, Lloyd; Mandel, Joshua C; Sharma, Deepak K; Jiang, GuoqianJournal of biomedical informatics.2017 03;28213144
Septic Cardiomyopathy: Getting to the Heart of the Matter.Sweeney, Timothy E; Khatri, PurveshCritical care medicine.2017 Mar;28212222
A general statistical framework for subgroup identification and comparative treatment scoring.Chen, Shuai; Tian, Lu; Cai, Tianxi; Yu, MenggangBiometrics.2017 Dec;28211943
FacetGist: Collective Extraction of Document Facets in Large Technical Corpora.Siddiqui, Tarique; Ren, Xiang; Parameswaran, Aditya; Han, JiaweiProceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management.2016 Oct;28210517
Interactive Data Exploration with Smart Drill-Down.Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, AdityaProceedings. International Conference on Data Engineering.2016 May;28210096
Dynamics of Large Multi-View Social Networks: Synergy, Cannibalization and Cross-View Interplay.Shi, Yu; Kim, Myunghwan; Chatterjee, Shaunak; Tiwari, Mitul; Ghosh, Souvik; Rosales, RómerKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;28203486
Causal Discovery from Subsampled Time Series Data by Constraint Optimization.Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, DavidJMLR workshop and conference proceedings.2016 Aug;28203316
The Exposome Research Paradigm: an Opportunity to Understand the Environmental Basis for Human Health and Disease.Buck Louis, Germaine M; Smarr, Melissa M; Patel, Chirag JCurrent environmental health reports.2017 Mar;28194614
Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples.Kosmicki, Jack A; Samocha, Kaitlin E; Howrigan, Daniel P; Sanders, Stephan J; Slowikowski, Kamil; Lek, Monkol; Karczewski, Konrad J; Cutler, David J; Devlin, Bernie; Roeder, Kathryn; Buxbaum, Joseph D; Neale, Benjamin M; MacArthur, Daniel G; Wall, Dennis P; Robinson, Elise B; Daly, Mark JNature genetics.2017 Apr;28191890
Dual PI3K/mTOR Inhibition in Colorectal Cancers withAPCandPIK3CAMutations.Foley, Tyler M; Payne, Susan N; Pasch, Cheri A; Yueh, Alex E; Van De Hey, Dana R; Korkos, Demetra P; Clipson, Linda; Maher, Molly E; Matkowskyj, Kristina A; Newton, Michael A; Deming, Dustin AMolecular cancer research : MCR.2017 02 09;28184015
Predictive Modeling of Physician-Patient Dynamics That Influence Sleep Medication Prescriptions and Clinical Decision-Making.Beam, Andrew L; Kartoun, Uri; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Shaw, Stanley Y; Kohane, Isaac SScientific reports.2017 Feb 09;28181568
Independent value added by diffusion MRI for prediction of cognitive function in older adults.Scott, Julia A; Tosun, Duygu; Braskie, Meredith N; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNINeuroImage. Clinical.2017;28180075
Squish: Near-Optimal Compression for Archival of Relational Datasets.Gao, Yihan; Parameswaran, AdityaKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;28180028
Mining Discriminative Patterns to Predict Health Status for Cardiopulmonary Patients.Cheng, Qian; Shang, Jingbo; Juen, Joshua; Han, Jiawei; Schatz, BruceACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine.2016 Oct;28174760
MACFP: Maximal Approximate Consecutive Frequent Pattern Mining under Edit Distance.Shang, Jingbo; Peng, Jian; Han, JiaweiProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2016 May;28174677
Effect of Physical Activity on Self-Reported Disability in Older Adults: Results from the LIFE Study.Manini, Todd M; Beavers, Daniel P; Pahor, Marco; Guralnik, Jack M; Spring, Bonnie; Church, Timothy S; King, Abby C; Folta, Sara C; Glynn, Nancy W; Marsh, Anthony P; Gill, Thomas M; LIFE study investigatorsJournal of the American Geriatrics Society.2017 May;28168689
Phantom PAINS: Problems with the Utility of Alerts for Pan-Assay INterference CompoundS.Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, AlexanderJournal of chemical information and modeling.2017 Mar 27;28165734
DPClass: An Effective but Concise Discriminative Patterns-Based Classification Framework.Shang, Jingbo; Tong, Wenzhu; Peng, Jian; Han, JiaweiProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2016 May;28163983
GMove: Group-Level Mobility Modeling Using Geo-Tagged Social Media.Zhang, Chao; Zhang, Keyang; Yuan, Quan; Zhang, Luming; Hanratty, Tim; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;28163978
Decibel: The Relational Dataset Branching System.Maddox, Michael; Goehring, David; Elmore, Aaron J; Madden, Samuel; Parameswaran, Aditya; Deshpande, AmolProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2016 May;28149668
Towards Globally Optimal Crowdsourcing Quality Management: The Uniform Worker Setting.Das Sarma, Akash; Parameswaran, Aditya; Widom, JenniferProceedings. ACM-Sigmod International Conference on Management of Data.2016 Jun-Jul;28149000
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.Griffith, Malachi; Spies, Nicholas C; Krysiak, Kilannin; McMichael, Joshua F; Coffman, Adam C; Danos, Arpad M; Ainscough, Benjamin J; Ramirez, Cody A; Rieke, Damian T; Kujan, Lynzey; Barnell, Erica K; Wagner, Alex H; Skidmore, Zachary L; Wollam, Amber; Liu, Connor J; Jones, Martin R; Bilski, Rachel L; Lesurf, Robert; Feng, Yan-Yang; Shah, Nakul M; Bonakdar, Melika; Trani, Lee; Matlock, Matthew; Ramu, Avinash; Campbell, Katie M; Spies, Gregory C; Graubert, Aaron P; Gangavarapu, Karthik; Eldred, James M; Larson, David E; Walker, Jason R; Good, Benjamin M; Wu, Chunlei; Su, Andrew I; Dienstmann, Rodrigo; Margolin, Adam A; Tamborero, David; Lopez-Bigas, Nuria; Jones, Steven J M; Bose, Ron; Spencer, David H; Wartman, Lukas D; Wilson, Richard K; Mardis, Elaine R; Griffith, Obi LNature genetics.2017 Jan 31;28138153
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.Rice, Edward S; Kohno, Satomi; John, John St; Pham, Son; Howard, Jonathan; Lareau, Liana F; O'Connell, Brendan L; Hickey, Glenn; Armstrong, Joel; Deran, Alden; Fiddes, Ian; Platt 2nd, Roy N; Gresham, Cathy; McCarthy, Fiona; Kern, Colin; Haan, David; Phan, Tan; Schmidt, Carl; Sanford, Jeremy R; Ray, David A; Paten, Benedict; Guillette Jr, Louis J; Green, Richard EGenome research.2017 May;28137821
Simultaneous Modeling of Disease Status and Clinical Phenotypes To Increase Power in Genome-Wide Association Studies.Bilow, Michael; Crespo, Fernando; Pan, Zhicheng; Eskin, Eleazar; Eyheramendy, SusanaGenetics.2017 Mar;28132020
White matter hyperintensities correlate to cognition and fiber tract integrity in older adults with HIV.Watson, Christa; Busovaca, Edgar; Foley, Jessica M; Allen, I Elaine; Schwarz, Christopher G; Jahanshad, Neda; Nir, Talia M; Esmaeili-Firidouni, Pardis; Milanini, Benedetta; Rosen, Howard; Carmichael, Owen T; Thompson, Paul M; Valcour, Victor GJournal of neurovirology.2017 Jun;28101804
Novel genetic loci associated with hippocampal volume.Hibar, Derrek P (see original citation for additional authors)Nature communications.2017 Jan 18;28098162
Brain substrates of reward processing and the ?-opioid receptor: a pathway into pain?Nees, Frauke; Becker, Susanne; Millenet, Sabina; Banaschewski, Tobias; Poustka, Luise; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Desrivières, Sylvane; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Flor, Herta; IMAGEN consortiumPain.;28092323
Hierarchical Span-Based Conditional Random Fields for Labeling and Segmenting Events in Wearable Sensor Data Streams.Adams, Roy J; Saleheen, Nazir; Thomaz, Edison; Parate, Abhinav; Kumar, Santosh; Marlin, Benjamin MProceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning.2016 Jun;28090606
Domain Adaptation Methods for Improving Lab-to-field Generalization of Cocaine Detection using Wearable ECG.Natarajan, Annamalai; Angarita, Gustavo; Gaiser, Edward; Malison, Robert; Ganesan, Deepak; Marlin, Benjamin MProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2016 Sep;28090605
Evaluating surrogate marker information using censored data.Parast, Layla; Cai, Tianxi; Tian, LuStatistics in medicine.2017 May 20;28088843
Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies.Nikolova, Olga; Moser, Russell; Kemp, Christopher; Gönen, Mehmet; Margolin, Adam ABioinformatics (Oxford, England).2017 May 01;28082455
Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information.Li, Xiao; Dunn, Jessilyn; Salins, Denis; Zhou, Gao; Zhou, Wenyu; Schüssler-Fiorenza Rose, Sophia Miryam; Perelman, Dalia; Colbert, Elizabeth; Runge, Ryan; Rego, Shannon; Sonecha, Ria; Datta, Somalee; McLaughlin, Tracey; Snyder, Michael PPLoS biology.2017 Jan;28081144
EmptyHeaded: A Relational Engine for Graph Processing.Aberger, Christopher R; Tu, Susan; Olukotun, Kunle; Ré, ChristopherProceedings. ACM-Sigmod International Conference on Management of Data.2016 Jun-Jul;28077912
Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health.Manrai, Arjun K; Cui, Yuxia; Bushel, Pierre R; Hall, Molly; Karakitsios, Spyros; Mattingly, Carolyn J; Ritchie, Marylyn; Schmitt, Charles; Sarigiannis, Denis A; Thomas, Duncan C; Wishart, David; Balshaw, David M; Patel, Chirag JAnnual review of public health.2017 03 20;28068484
Hyperbolic Space Sparse Coding with Its Application on Prediction of Alzheimer's Disease in Mild Cognitive Impairment.Zhang, Jie; Shi, Jie; Stonnington, Cynthia; Li, Qingyang; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, YalinMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.2016 Oct;28066843
Finding Significant Stress Episodes in a Discontinuous Time Series of Rapidly Varying Mobile Sensor Data.Sarker, Hillol; Tyburski, Matthew; Rahman, Md Mahbubur; Hovsepian, Karen; Sharmin, Moushumi; Epstein, David H; Preston, Kenzie L; Furr-Holden, C Debra; Milam, Adam; Nahum-Shani, Inbal; al'Absi, Mustafa; Kumar, SantoshProceedings of the SIGCHI conference on human factors in computing systems. CHI Conference.2016 May;28058409
mSieve: Differential Behavioral Privacy in Time Series of Mobile Sensor Data.Saleheen, Nazir; Chakraborty, Supriyo; Ali, Nasir; Mahbubur Rahman, Md; Hossain, Syed Monowar; Bari, Rummana; Buder, Eugene; Srivastava, Mani; Kumar, SantoshProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2016 Sep;28058408
Preparatory co-activation of the ankle muscles may prevent ankle inversion injuries.DeMers, Matthew S; Hicks, Jennifer L; Delp, Scott LJournal of biomechanics.2017 Feb 08;28057351
Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease.Mayers, Michael D; Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis WJournal of proteome research.2017 Feb 03;28052195
Identifying disordered eating behaviours in adolescents: how do parent and adolescent reports differ by sex and age?Bartholdy, Savani; Allen, Karina; Hodsoll, John; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Mennigen, Eva; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, UlrikeEuropean child & adolescent psychiatry.2017 Jun;28050706
Structured Matrix Completion with Applications to Genomic Data Integration.Cai, Tianxi; Cai, T Tony; Zhang, AnruJournal of the American Statistical Association.2016;28042188
Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of Tumorigenesis.Zhou, Zhuan; Luo, Aiping; Shrivastava, Indira; He, Mingjing; Huang, Yi; Bahar, Ivet; Liu, Zhihua; Wan, YongEBioMedicine.2017 Feb;28040451
Towards a Holistic Cortical Thickness Descriptor: Heat Kernel-Based Grey Matter Morphology Signatures.Wang, Gang; Wang, Yalin; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2017 Feb 15;28033566
A SMART data analysis method for constructing adaptive treatment strategies for substance use disorders.Nahum-Shani, Inbal; Ertefaie, Ashkan; Lu, Xi Lucy; Lynch, Kevin G; McKay, James R; Oslin, David W; Almirall, DanielAddiction (Abingdon, England).2017 May;28029718
Allostatic load and reduced cortical thickness in schizophrenia.Chiappelli, Joshua; Kochunov, Peter; Savransky, Anya; Fisseha, Feven; Wisner, Krista; Du, Xiaoming; Rowland, Laura M; Hong, L ElliotPsychoneuroendocrinology.2017 Mar;28027496
Relationship of a common OXTR gene variant to brain structure and default mode network function in healthy humans.Wang, Junping; Braskie, Meredith N; Hafzalla, George W; Faskowitz, Joshua; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Yu, Chunshui; Thompson, Paul MNeuroImage.2017 Feb 15;28017919
Proteomics Research in Cardiovascular Medicine and Biomarker Discovery.Lam, Maggie P Y; Ping, Peipei; Murphy, ElizabethJournal of the American College of Cardiology.2016 Dec 27;28007144
Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome.Garlid, Anders Olav; Polson, Jennifer S; Garlid, Keith D; Hermjakob, Henning; Ping, PeipeiHandbook of experimental pharmacology.2017;27995389
Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers.Spagnolo, Daniel M; Gyanchandani, Rekha; Al-Kofahi, Yousef; Stern, Andrew M; Lezon, Timothy R; Gough, Albert; Meyer, Dan E; Ginty, Fiona; Sarachan, Brion; Fine, Jeffrey; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S ChakraJournal of pathology informatics.2016;27994939
mCrave: Continuous Estimation of Craving During Smoking Cessation.Chatterjee, Soujanya; Hovsepian, Karen; Sarker, Hillol; Saleheen, Nazir; al'Absi, Mustafa; Atluri, Gowtham; Ertin, Emre; Lam, Cho; Lemieux, Andrine; Nakajima, Motohiro; Spring, Bonnie; Wetter, David W; Kumar, SantoshProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2016 Sep;27990501
Screening Breast MRI Outcomes in Routine Clinical Practice: Comparison to BI-RADS Benchmarks.Strigel, Roberta M; Rollenhagen, Jennifer; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie; DeMartini, Wendy BAcademic radiology.2017 Apr;27986508
Cardiovascular proteomics in the era of big data: experimental and computational advances.Lam, Maggie P Y; Lau, Edward; Ng, Dominic C M; Wang, Ding; Ping, PeipeiClinical proteomics.2016;27980500
Heritability of the shape of subcortical brain structures in the general population.Roshchupkin, Gennady V; Gutman, Boris A; Vernooij, Meike W; Jahanshad, Neda; Martin, Nicholas G; Hofman, Albert; McMahon, Katie L; van der Lee, Sven J; van Duijn, Cornelia M; de Zubicaray, Greig I; Uitterlinden, André G; Wright, Margaret J; Niessen, Wiro J; Thompson, Paul M; Ikram, M Arfan; Adams, Hieab H HNature communications.2016 Dec 15;27976715
Influence of donor age on induced pluripotent stem cells.Lo Sardo, Valentina; Ferguson, William; Erikson, Galina A; Topol, Eric J; Baldwin, Kristin K; Torkamani, AliNature biotechnology.2017 Jan;27941802
Large-scale identification of patients with cerebral aneurysms using natural language processing.Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Can, Anil; Abd-El-Barr, Muhammad; Gainer, Vivian; Shadick, Nancy A; Murphy, Shawn; Cai, Tianxi; Savova, Guergana; Weiss, Scott T; Du, RoseNeurology.2017 Jan 10;27927935
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.Deutsch, Eric W; Csordas, Attila; Sun, Zhi; Jarnuczak, Andrew; Perez-Riverol, Yasset; Ternent, Tobias; Campbell, David S; Bernal-Llinares, Manuel; Okuda, Shujiro; Kawano, Shin; Moritz, Robert L; Carver, Jeremy J; Wang, Mingxun; Ishihama, Yasushi; Bandeira, Nuno; Hermjakob, Henning; Vizcaíno, Juan AntonioNucleic acids research.2017 Jan 04;27924013
Childhood adversity impacts on brain subcortical structures relevant to depression.Frodl, Thomas; Janowitz, Deborah; Schmaal, Lianne; Tozzi, Leonardo; Dobrowolny, Henrik; Stein, Dan J; Veltman, Dick J; Wittfeld, Katharina; van Erp, Theo G M; Jahanshad, Neda; Block, Andrea; Hegenscheid, Katrin; Völzke, Henry; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Frey, Eva Maria; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Schnell, Knut; Grotegerd, Dominik; Arolt, Volker; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Zurowski, Bartosz; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Thompson, Paul M; Hibar, Derrek P; Dannlowski, Udo; Grabe, Hans JJournal of psychiatric research.2017 Mar;27918926
The UCSC Genome Browser database: 2017 update.Tyner, Cath; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Eisenhart, Christopher; Fischer, Clayton M; Gibson, David; Gonzalez, Jairo Navarro; Guruvadoo, Luvina; Haeussler, Maximilian; Heitner, Steve; Hinrichs, Angie S; Karolchik, Donna; Lee, Brian T; Lee, Christopher M; Nejad, Parisa; Raney, Brian J; Rosenbloom, Kate R; Speir, Matthew L; Villarreal, Chris; Vivian, John; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W JamesNucleic acids research.2017 Jan 04;27899642
The ExAC browser: displaying reference data information from over 60 000 exomes.Karczewski, Konrad J; Weisburd, Ben; Thomas, Brett; Solomonson, Matthew; Ruderfer, Douglas M; Kavanagh, David; Hamamsy, Tymor; Lek, Monkol; Samocha, Kaitlin E; Cummings, Beryl B; Birnbaum, Daniel; The Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel GNucleic acids research.2017 Jan 04;27899611
The Human Phenotype Ontology in 2017.Köhler, Sebastian; Vasilevsky, Nicole A; Engelstad, Mark; Foster, Erin; McMurry, Julie; Aymé, Ségolène; Baynam, Gareth; Bello, Susan M; Boerkoel, Cornelius F; Boycott, Kym M; Brudno, Michael; Buske, Orion J; Chinnery, Patrick F; Cipriani, Valentina; Connell, Laureen E; Dawkins, Hugh J S; DeMare, Laura E; Devereau, Andrew D; de Vries, Bert B A; Firth, Helen V; Freson, Kathleen; Greene, Daniel; Hamosh, Ada; Helbig, Ingo; Hum, Courtney; Jähn, Johanna A; James, Roger; Krause, Roland; F Laulederkind, Stanley J; Lochmüller, Hanns; Lyon, Gholson J; Ogishima, Soichi; Olry, Annie; Ouwehand, Willem H; Pontikos, Nikolas; Rath, Ana; Schaefer, Franz; Scott, Richard H; Segal, Michael; Sergouniotis, Panagiotis I; Sever, Richard; Smith, Cynthia L; Straub, Volker; Thompson, Rachel; Turner, Catherine; Turro, Ernest; Veltman, Marijcke W M; Vulliamy, Tom; Yu, Jing; von Ziegenweidt, Julie; Zankl, Andreas; Züchner, Stephan; Zemojtel, Tomasz; Jacobsen, Julius O B; Groza, Tudor; Smedley, Damian; Mungall, Christopher J; Haendel, Melissa; Robinson, Peter NNucleic acids research.2017 Jan 04;27899602
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements.Mi, Huaiyu; Huang, Xiaosong; Muruganujan, Anushya; Tang, Haiming; Mills, Caitlin; Kang, Diane; Thomas, Paul DNucleic acids research.2017 Jan 04;27899595
THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE.Garmire, Lana X; Gliske, Stephen; Nguyen, Quynh C; Chen, Jonathan H; Nemati, Shamim; VAN Horn, John D; Moore, Jason H; Shreffler, Carol; Dunn, MichellePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2016;27897014
DATA SHARING AND REPRODUCIBLE CLINICAL GENETIC TESTING: SUCCESSES AND CHALLENGES.Yang, Shan; Cline, Melissa; Zhang, Can; Paten, Benedict; Lincoln, Stephen EPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2017;27896972
EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.Haynes, Winston A; Vallania, Francesco; Liu, Charles; Bongen, Erika; Tomczak, Aurelie; Andres-Terrè, Marta; Lofgren, Shane; Tam, Andrew; Deisseroth, Cole A; Li, Matthew D; Sweeney, Timothy E; Khatri, PurveshPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2017;27896970
PROSNET: INTEGRATING HOMOLOGY WITH MOLECULAR NETWORKS FOR PROTEIN FUNCTION PREDICTION.Wang, Sheng; Qu, Meng; Peng, JianPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2017;27896959
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.Jain, Miten; Olsen, Hugh E; Paten, Benedict; Akeson, MarkGenome biology.2016 11 25;27887629
Genome-wide association studies of drug response and toxicity: an opportunity for genome medicine.Giacomini, Kathleen M; Yee, Sook Wah; Mushiroda, Taisei; Weinshilboum, Richard M; Ratain, Mark J; Kubo, MichiakiNature reviews. Drug discovery.2017 Jan;27885282
Enabling an Open Data Ecosystem for the Neurosciences.Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, BrianNeuron.2016 Nov 23;27883904
3D tract-specific local and global analysis of white matter integrity in Alzheimer's disease.Jin, Yan; Huang, Chao; Daianu, Madelaine; Zhan, Liang; Dennis, Emily L; Reid, Robert I; Jack Jr, Clifford R; Zhu, Hongtu; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeHuman brain mapping.2017 Mar;27883250
A review of validation strategies for computational drug repositioning.Brown, Adam S; Patel, Chirag JBriefings in bioinformatics.2018 01 01;27881429
Multimodal neuroimaging of male and female brain structure in health and disease across the life span.Jahanshad, Neda; Thompson, Paul MJournal of neuroscience research.2017 01 02;27870421
Colocalization of GWAS and eQTL Signals Detects Target Genes.Hormozdiari, Farhad; van de Bunt, Martijn; Segrè, Ayellet V; Li, Xiao; Joo, Jong Wha J; Bilow, Michael; Sul, Jae Hoon; Sankararaman, Sriram; Pasaniuc, Bogdan; Eskin, EleazarAmerican journal of human genetics.2016 Dec 01;27866706
Extension of research data repository system to support direct compute access to biomedical datasets: enhancing Dataverse to support large datasets.McKinney, Bill; Meyer, Peter A; Crosas, Mercè; Sliz, PiotrAnnals of the New York Academy of Sciences.2017 Jan;27862010
RNA-Binding Protein IGF2BP1 in Cutaneous Squamous Cell Carcinoma.Kim, TaeWon; Havighurst, Thomas; Kim, KyungMann; Hebbring, Scott J; Ye, Zhan; Aylward, Juliet; Keles, Sunduz; Xu, Yaohui G; Spiegelman, Vladimir SThe Journal of investigative dermatology.2017 Mar;27856289
Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set.Li, Hui; Zhu, Yitan; Burnside, Elizabeth S; Huang, Erich; Drukker, Karen; Hoadley, Katherine A; Fan, Cheng; Conzen, Suzanne D; Zuley, Margarita; Net, Jose M; Sutton, Elizabeth; Whitman, Gary J; Morris, Elizabeth; Perou, Charles M; Ji, Yuan; Giger, Maryellen LNPJ breast cancer.2016;27853751
Interpretable Decision Sets: A Joint Framework for Description and Prediction.Lakkaraju, Himabindu; Bach, Stephen H; Jure, LeskovecKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;27853627
node2vec: Scalable Feature Learning for Networks.Grover, Aditya; Leskovec, JureKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;27853626
Development of a dynamic computational model of social cognitive theory.Riley, William T; Martin, Cesar A; Rivera, Daniel E; Hekler, Eric B; Adams, Marc A; Buman, Matthew P; Pavel, Misha; King, Abby CTranslational behavioral medicine.2016 12;27848208
A network-based phenotype mapping approach to identify genes that modulate drug response phenotypes.Cairns, Junmei; Ung, Choong Yong; da Rocha, Edroaldo Lummertz; Zhang, Cheng; Correia, Cristina; Weinshilboum, Richard; Wang, Liewei; Li, HuScientific reports.2016 Nov 14;27841317
Bias correction in species distribution models: pooling survey and collection data for multiple species.Fithian, William; Elith, Jane; Hastie, Trevor; Keith, David AMethods in ecology and evolution.2015 Apr;27840673
Topological false discovery rates for brain mapping based on signal height.Li, Junning; Gahm, Jin Kyu; Shi, Yonggang; Toga, Arthur WNeuroImage.;27838286
A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets.Zuo, Chandler; Chen, Kailei; Kele?, SündüzJournal of computational biology : a journal of computational molecular cell biology.2016 Nov 11;27835030
Private and Efficient Query Processing on Outsourced Genomic Databases.Ghasemi, Reza; Al Aziz, Md Momin; Mohammed, Noman; Dehkordi, Massoud Hadian; Jiang, XiaoqianIEEE journal of biomedical and health informatics.2017 09;27834660
Diffusion-weighted imaging uncovers likely sources of processing-speed deficits in schizophrenia.Kochunov, Peter; Rowland, Laura M; Fieremans, Els; Veraart, Jelle; Jahanshad, Neda; Eskandar, George; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Shukla, Dinesh; Sampath, Hemalatha; Thompson, Paul M; Hong, L ElliotProceedings of the National Academy of Sciences of the United States of America.2016 Nov 22;27834215
Growing Wikipedia Across Languages via Recommendation.Wulczyn, Ellery; West, Robert; Zia, Leila; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2016 Apr;27819073
Functional connectivity in cortico-subcortical brain networks underlying reward processing in attention-deficit/hyperactivity disorder.Oldehinkel, Marianne; Beckmann, Christian F; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, MaartenNeuroImage. Clinical.2016;27818941
Gait biomechanics in the era of data science.Ferber, Reed; Osis, Sean T; Hicks, Jennifer L; Delp, Scott LJournal of biomechanics.2016 12 08;27814971
Attention-Deficit/Hyperactivity Disorder symptoms coincide with altered striatal connectivity.Oldehinkel, Marianne; Beckmann, Christian F; Pruim, Raimon H R; van Oort, Erik S B; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, MaartenBiological psychiatry. Cognitive neuroscience and neuroimaging.2016 Jul;27812554
Tensor Spectral Clustering for Partitioning Higher-order Network Structures.Benson, Austin R; Gleich, David F; Leskovec, JureProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2015;27812399
T2-Imaging Changes in the Nigrosome-1 Relate to Clinical Measures of Parkinson's Disease.Fu, Katherine A; Nathan, Romil; Dinov, Ivo D; Li, Junning; Toga, Arthur WFrontiers in neurology.2016;27812347
Coupled Harmonic Bases for Longitudinal Characterization of Brain Networks.Hwang, Seong Jae; Adluru, Nagesh; Collins, Maxwell D; Ravi, Sathya N; Bendlin, Barbara B; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2016 Jun-Jul;27812274
Enabling an Open Data Ecosystem for the Neurosciences.Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, BrianNeuron.2016 Nov 02;27810004
Adaptive Signal Recovery on Graphs via Harmonic Analysis for Experimental Design in Neuroimaging.Kim, Won Hwa; Hwang, Seong Jae; Adluru, Nagesh; Johnson, Sterling C; Singh, VikasComputer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision.2016 Oct;27807594
Quantifying unobserved protein-coding variants in human populations provides a roadmap for large-scale sequencing projects.Zou, James; Valiant, Gregory; Valiant, Paul; Karczewski, Konrad; Chan, Siu On; Samocha, Kaitlin; Lek, Monkol; Sunyaev, Shamil; Daly, Mark; MacArthur, Daniel GNature communications.2016 Oct 31;27796292
Abundant Inverse Regression using Sufficient Reduction and its Applications.Kim, Hyunwoo J; Smith, Brandon M; Adluru, Nagesh; Dyer, Charles R; Johnson, Sterling C; Singh, VikasComputer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision.2016 Oct;27796010
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia A; Lennartsson, Andreas; Drabløs, Finn; Ramilowski, Jordan A; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R R; Kasukawa, Takeya; Kawaji, HideyaNucleic acids research.2017 Jan 04;27794045
Objective measurement of free-living physical activity (performance) in lumbar spinal stenosis: are physical activity guidelines being met?Norden, Justin; Smuck, Matthew; Sinha, Aman; Hu, Richard; Tomkins-Lane, ChristyThe spine journal : official journal of the North American Spine Society.2017 Jan;27793759
Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis.Liao, Katherine P; Sparks, Jeffrey A; Hejblum, Boris P; Kuo, I-Hsin; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Gainer, Vivian S; Liu, Weidong; Cai, T Tony; Sokolove, Jeremy; Cai, TianxiArthritis & rheumatology (Hoboken, N.J.).2017 Apr;27792870
Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience.Links, Amanda E; Draper, David; Lee, Elizabeth; Guzman, Jessica; Valivullah, Zaheer; Maduro, Valerie; Lebedev, Vlad; Didenko, Maxim; Tomlin, Garrick; Brudno, Michael; Girdea, Marta; Dumitriu, Sergiu; Haendel, Melissa A; Mungall, Christopher J; Smedley, DaFrontiers in medicine.2016;27785453
A statistical approach for identifying differential distributions in single-cell RNA-seq experiments.Korthauer, Keegan D; Chu, Li-Fang; Newton, Michael A; Li, Yuan; Thomson, James; Stewart, Ron; Kendziorski, ChristinaGenome biology.2016 Oct 25;27782827
A database of human exposomes and phenomes from the US National Health and Nutrition Examination Survey.Patel, Chirag J; Pho, Nam; McDuffie, Michael; Easton-Marks, Jeremy; Kothari, Cartik; Kohane, Isaac S; Avillach, PaulScientific data.2016 10 25;27779619
Computational pan-genomics: status, promises and challenges.Computational Pan-Genomics ConsortiumBriefings in bioinformatics.2016 Oct 21;27769991
Causal Clustering for 1-Factor Measurement Models.Kummerfeld, Erich; Ramsey, JosephKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016;27766182
Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data.Kang, Eun Yong; Martin, Lisa; Mangul, Serghei; Isvilanonda, Warin; Zou, Jennifer; Ben-David, Eyal; Han, Buhm; Lusis, Aldons J; Shifman, Sagiv; Eskin, EleazarGenetics.2016 Oct 07;27765809
Publicly Available Data Provide Evidence against NR1H3 R415Q Causing Multiple Sclerosis.Minikel, Eric Vallabh; MacArthur, Daniel GNeuron.2016 Oct 19;27764668
Signal-Oriented Pathway Analyses Reveal a Signaling Complex as a Synthetic Lethal Target for p53 Mutations.Lu, Songjian; Cai, Chunhui; Yan, Gonghong; Zhou, Zhuan; Wan, Yong; Chen, Vicky; Chen, Lujia; Cooper, Gregory F; Obeid, Lina M; Hannun, Yusuf A; Lee, Adrian V; Lu, XinghuaCancer research.2016 Dec 01;27758891
Exome chip analyses in adult attention deficit hyperactivity disorder.Zayats, T; Jacobsen, K K; Kleppe, R; Jacob, C P; Kittel-Schneider, S; Ribasés, M; Ramos-Quiroga, J A; Richarte, V; Casas, M; Mota, N R; Grevet, E H; Klein, M; Corominas, J; Bralten, J; Galesloot, T; Vasquez, A A; Herms, S; Forstner, A J; Larsson, H; Breen, G; Asherson, P; Gross-Lesch, S; Lesch, K P; Cichon, S; Gabrielsen, M B; Holmen, O L; Bau, C H D; Buitelaar, J; Kiemeney, L; Faraone, S V; Cormand, B; Franke, B; Reif, A; Haavik, J; Johansson, STranslational psychiatry.2016 10 18;27754487
Early matrix metalloproteinase-9 inhibition post-myocardial infarction worsens cardiac dysfunction by delaying inflammation resolution.Iyer, Rugmani Padmanabhan; de Castro Brás, Lisandra E; Patterson, Nicolle L; Bhowmick, Manishabrata; Flynn, Elizabeth R; Asher, Majdouline; Cannon, Presley L; Deleon-Pennell, Kristine Y; Fields, Gregg B; Lindsey, Merry LJournal of molecular and cellular cardiology.2016 Nov;27746126
Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex.Guadalupe, Tulio; Mathias, Samuel R; vanErp, Theo G M; Whelan, Christopher D; Zwiers, Marcel P; Abe, Yoshinari; Abramovic, Lucija; Agartz, Ingrid; Andreassen, Ole A; Arias-Vásquez, Alejandro; Aribisala, Benjamin S; Armstrong, Nicola J; Arolt, Volker; Artiges, Eric; Ayesa-Arriola, Rosa; Baboyan, Vatche G; Banaschewski, Tobias; Barker, Gareth; Bastin, Mark E; Baune, Bernhard T; Blangero, John; Bokde, Arun L W; Boedhoe, Premika S W; Bose, Anushree; Brem, Silvia; Brodaty, Henry; Bromberg, Uli; Brooks, Samantha; Büchel, Christian; Buitelaar, Jan; Calhoun, Vince D; Cannon, Dara M; Cattrell, Anna; Cheng, Yuqi; Conrod, Patricia J; Conzelmann, Annette; Corvin, Aiden; Crespo-Facorro, Benedicto; Crivello, Fabrice; Dannlowski, Udo; de Zubicaray, Greig I; de Zwarte, Sonja M C; Deary, Ian J; Desrivières, Sylvane; Doan, Nhat Trung; Donohoe, Gary; Dørum, Erlend S; Ehrlich, Stefan; Espeseth, Thomas; Fernández, Guillén; Flor, Herta; Fouche, Jean-Paul; Frouin, Vincent; Fukunaga, Masaki; Gallinat, Jürgen; Garavan, Hugh; Gill, Michael; Suarez, Andrea Gonzalez; Gowland, Penny; Grabe, Hans J; Grotegerd, Dominik; Gruber, Oliver; Hagenaars, Saskia; Hashimoto, Ryota; Hauser, Tobias U; Heinz, Andreas; Hibar, Derrek P; Hoekstra, Pieter J; Hoogman, Martine; Howells, Fleur M; Hu, Hao; Hulshoff Pol, Hilleke E; Huyser, Chaim; Ittermann, Bernd; Jahanshad, Neda; Jönsson, Erik G; Jurk, Sarah; Kahn, Rene S; Kelly, Sinead; Kraemer, Bernd; Kugel, Harald; Kwon, Jun Soo; Lemaitre, Herve; Lesch, Klaus-Peter; Lochner, Christine; Luciano, Michelle; Marquand, Andre F; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Martinot, Jean-Luc; Mataix-Cols, David; Mather, Karen; McDonald, Colm; McMahon, Katie L; Medland, Sarah E; Menchón, José M; Morris, Derek W; Mothersill, Omar; Maniega, Susana Munoz; Mwangi, Benson; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswaamy, Janardhanan C; Nees, Frauke; Nordvik, Jan E; Onnink, A Marten H; Opel, Nils; Ophoff, Roel; Paillère Martinot, Marie-Laure; Papadopoulos Orfanos, Dimitri; Pauli, Paul; Paus, Tomá?; Poustka, Luise; Reddy, Janardhan Yc; Renteria, Miguel E; Roiz-Santiáñez, Roberto; Roos, Annerine; Royle, Natalie A; Sachdev, Perminder; Sánchez-Juan, Pascual; Schmaal, Lianne; Schumann, Gunter; Shumskaya, Elena; Smolka, Michael N; Soares, Jair C; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Toro, Roberto; Turner, Jessica A; Tzourio-Mazoyer, Nathalie; Uhlmann, Anne; Hernández, Maria Valdés; van den Heuvel, Odile A; van der Meer, Dennis; van Haren, Neeltje E M; Veltman, Dick J; Venkatasubramanian, Ganesan; Vetter, Nora C; Vuletic, Daniella; Walitza, Susanne; Walter, Henrik; Walton, Esther; Wang, Zhen; Wardlaw, Joanna; Wen, Wei; Westlye, Lars T; Whelan, Robert; Wittfeld, Katharina; Wolfers, Thomas; Wright, Margaret J; Xu, Jian; Xu, Xiufeng; Yun, Je-Yeon; Zhao, JingJing; Franke, Barbara; Thompson, Paul M; Glahn, David C; Mazoyer, Bernard; Fisher, Simon E; Francks, ClydeBrain imaging and behavior.2017 Oct;27738994
Molecular Autopsy for Sudden Unexpected Death.Torkamani, Ali; Muse, Evan D; Spencer, Emily G; Rueda, Manuel; Wagner, Glenn N; Lucas, Jonathan R; Topol, Eric JJAMA.2016 Oct 11;27727376
Partitioning heritability analysis reveals a shared genetic basis of brain anatomy and schizophrenia.Lee, P H; Baker, J T; Holmes, A J; Jahanshad, N; Ge, T; Jung, J-Y; Cruz, Y; Manoach, D S; Hibar, D P; Faskowitz, J; McMahon, K L; de Zubicaray, G I; Martin, N H; Wright, M J; Öngür, D; Buckner, R; Roffman, J; Thompson, P M; Smoller, J WMolecular psychiatry.2016 Dec;27725656
A regulatory circuit of miR-125b/miR-20b and Wnt signalling controls glioblastoma phenotypes through FZD6-modulated pathways.Huang, Tianzhi; Alvarez, Angel A; Pangeni, Rajendra P; Horbinski, Craig M; Lu, Songjian; Kim, Sung-Hak; James, C David; J Raizer, Jeffery; A Kessler, John; Brenann, Cameron W; Sulman, Erik P; Finocchiaro, Gaetano; Tan, Ming; Nishikawa, Ryo; Lu, Xinghua; Nakano, Ichiro; Hu, Bo; Cheng, Shi-YuanNature communications.2016 10 04;27698350
Ultra-rare disruptive and damaging mutations influence educational attainment in the general population.Ganna, Andrea; Genovese, Giulio; Howrigan, Daniel P; Byrnes, Andrea; Kurki, Mitja; Zekavat, Seyedeh M; Whelan, Christopher W; Kals, Mart; Nivard, Michel G; Bloemendal, Alex; Bloom, Jonathan M; Goldstein, Jacqueline I; Poterba, Timothy; Seed, Cotton; Handsaker, Robert E; Natarajan, Pradeep; Mägi, Reedik; Gage, Diane; Robinson, Elise B; Metspalu, Andres; Salomaa, Veikko; Suvisaari, Jaana; Purcell, Shaun M; Sklar, Pamela; Kathiresan, Sekar; Daly, Mark J; McCarroll, Steven A; Sullivan, Patrick F; Palotie, Aarno; Esko, Tõnu; Hultman, Christina; Neale, Benjamin MNature neuroscience.2016 12;27694993
Novel genetic loci underlying human intracranial volume identified through genome-wide association.Adams, Hieab H H (see original citation for additional authors)Nature neuroscience.2016 12;27694991
Phase i trials in melanoma: A framework to translate preclinical findings to the clinic.Kim, Eunjung; Rebecca, Vito W; Smalley, Keiran S M; Anderson, Alexander R AEuropean journal of cancer (Oxford, England : 1990).2016 Nov;27689717
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs.Zerbino, Daniel R; Ballinger, Tracy; Paten, Benedict; Hickey, Glenn; Haussler, DavidBMC bioinformatics.2016 Sep 29;27687569
MeSHDD: Literature-based drug-drug similarity for drug repositioning.Brown, Adam S; Patel, Chirag JJournal of the American Medical Informatics Association : JAMIA.2016 Sep 27;27678460
Quantitative magnetic resonance imaging traits as endophenotypes for genetic mapping in epilepsy.Alhusaini, Saud; Whelan, Christopher D; Sisodiya, Sanjay M; Thompson, Paul MNeuroImage. Clinical.2016;27672556
Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications.Tao, Chenyang; Nichols, Thomas E; Hua, Xue; Ching, Christopher R K; Rolls, Edmund T; Thompson, Paul M; Feng, Jianfeng; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2017 Jan 01;27666385
Just-in-Time Adaptive Interventions (JITAIs) in Mobile Health: Key Components and Design Principles for Ongoing Health Behavior Support.Nahum-Shani, Inbal; Smith, Shawna N; Spring, Bonnie J; Collins, Linda M; Witkiewitz, Katie; Tewari, Ambuj; Murphy, Susan AAnnals of behavioral medicine : a publication of the Society of Behavioral Medicine.2016 Sep 23;27663578
Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running.Uchida, Thomas K; Seth, Ajay; Pouya, Soha; Dembia, Christopher L; Hicks, Jennifer L; Delp, Scott LPloS one.2016;27656901
Actigraphy features for predicting mobility disability in older adults.Kheirkhahan, Matin; Tudor-Locke, Catrine; Axtell, Robert; Buman, Matthew P; Fielding, Roger A; Glynn, Nancy W; Guralnik, Jack M; King, Abby C; White, Daniel K; Miller, Michael E; Siddique, Juned; Brubaker, Peter; Rejeski, W Jack; Ranshous, Stephen; Pahor, Marco; Ranka, Sanjay; Manini, Todd MPhysiological measurement.2016 Sep 21;27653966
Adapting extracellular matrix proteomics for clinical studies on cardiac remodeling post-myocardial infarction.Lindsey, Merry L; Hall, Michael E; Harmancey, Romain; Ma, YonggangClinical proteomics.2016;27651752
Conformal invariants for multiply connected surfaces: Application to landmark curve-based brain morphometry analysis.Shi, Jie; Zhang, Wen; Tang, Miao; Caselli, Richard J; Wang, YalinMedical image analysis.2017 Jan;27639215
Cerebral amyloid is associated with greater white-matter hyperintensity accrual in cognitively normal older adults.Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNINeurobiology of aging.2016 12;27639120
Methods to increase reproducibility in differential gene expression via meta-analysis.Sweeney, Timothy E; Haynes, Winston A; Vallania, Francesco; Ioannidis, John P; Khatri, PurveshNucleic acids research.2017 01 09;27634930
Ruminative brooding is associated with salience network coherence in early pubertal youth.Ordaz, Sarah J; LeMoult, Joelle; Colich, Natalie L; Prasad, Gautam; Pollak, Madeline; Popolizio, Morgan; Price, Alexandra; Greicius, Michael; Gotlib, Ian HSocial cognitive and affective neuroscience.2017 Feb 01;27633394
Surrogate-assisted feature extraction for high-throughput phenotyping.Yu, Sheng; Chakrabortty, Abhishek; Liao, Katherine P; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, TianxiJournal of the American Medical Informatics Association : JAMIA.;27632993
Perspective: Beyond the genome.Leppert, John; Patel, ChiragNature.2016 09 15;27626778
Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates.Sievers, Chelsie K; Zou, Luli S; Pickhardt, Perry J; Matkowskyj, Kristina A; Albrecht, Dawn M; Clipson, Linda; Bacher, Jeffery W; Pooler, B Dustin; Moawad, Fouad J; Cash, Brooks D; Reichelderfer, Mark; Vo, Tien N; Newton, Michael A; Larget, Bret R; Halberg, Richard BGut.2016 Sep 08;27609830
Distinct Subcortical Volume Alterations in Pediatric and Adult OCD: A Worldwide Meta- and Mega-Analysis.Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Ameis, Stephanie H; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Fitzgerald, Kate D; Fouche, Jean-Paul; Giménez, Mònica; Gruner, Patricia; Hanna, Gregory L; Hibar, Derrek P; Hoexter, Marcelo Q; Hu, Hao; Huyser, Chaim; Ikari, Keisuke; Jahanshad, Neda; Kathmann, Norbert; Kaufmann, Christian; Koch, Kathrin; Kwon, Jun Soo; Lazaro, Luisa; Liu, Yanni; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Piras, Fabrizio; Piras, Federica; Pittenger, Christopher; Reddy, Y C Janardhan; Sato, Joao R; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stevens, Michael C; Szeszko, Philip R; Tolin, David F; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; van Wingen, Guido A; Xu, Jian; Xu, Xiufeng; Yun, Je-Yeon; Zhao, Qing; ENIGMA OCD Working Group; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile AThe American journal of psychiatry.2017 01 01;27609241
Overview of the interactive task in BioCreative V.Wang, Qinghua; S Abdul, Shabbir; Almeida, Lara; Ananiadou, Sophia; Balderas-Martínez, Yalbi I; Batista-Navarro, Riza; Campos, David; Chilton, Lucy; Chou, Hui-Jou; Contreras, Gabriela; Cooper, Laurel; Dai, Hong-Jie; Ferrell, Barbra; Fluck, Juliane; Gama-Castro, Socorro; George, Nancy; Gkoutos, Georgios; Irin, Afroza K; Jensen, Lars J; Jimenez, Silvia; Jue, Toni R; Keseler, Ingrid; Madan, Sumit; Matos, Sérgio; McQuilton, Peter; Milacic, Marija; Mort, Matthew; Natarajan, Jeyakumar; Pafilis, Evangelos; Pereira, Emiliano; Rao, Shruti; Rinaldi, Fabio; Rothfels, Karen; Salgado, David; Silva, Raquel M; Singh, Onkar; Stefancsik, Raymund; Su, Chu-Hsien; Subramani, Suresh; Tadepally, Hamsa D; Tsaprouni, Loukia; Vasilevsky, Nicole; Wang, Xiaodong; Chatr-Aryamontri, Andrew; Laulederkind, Stanley J F; Matis-Mitchell, Sherri; McEntyre, Johanna; Orchard, Sandra; Pundir, Sangya; Rodriguez-Esteban, Raul; Van Auken, Kimberly; Lu, Zhiyong; Schaeffer, Mary; Wu, Cathy H; Hirschman, Lynette; Arighi, Cecilia NDatabase : the journal of biological databases and curation.2016;27589961
Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.Deutsch, Eric W; Sun, Zhi; Campbell, David S; Binz, Pierre-Alain; Farrah, Terry; Shteynberg, David; Mendoza, Luis; Omenn, Gilbert S; Moritz, Robert LJournal of proteome research.2016 Nov 04;27577934
Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress.Papale, Ligia A; Li, Sisi; Madrid, Andy; Zhang, Qi; Chen, Li; Chopra, Pankaj; Jin, Peng; Kele?, Sündüz; Alisch, Reid SNeurobiology of disease.2016 Dec;27576189
Making the cut: improved ranking and selection for large-scale inference.Henderson, Nicholas C; Newton, Michael AJournal of the Royal Statistical Society. Series B, Statistical methodology.2016 Sep;27570475
Structural asymmetries of the human cerebellum in relation to cerebral cortical asymmetries and handedness.Kavaklioglu, Tulya; Guadalupe, Tulio; Zwiers, Marcel; Marquand, Andre F; Onnink, Marten; Shumskaya, Elena; Brunner, Han; Fernandez, Guillen; Fisher, Simon E; Francks, ClydeBrain structure & function.2016 Aug 26;27566607
Making a meaningful impact: modelling simultaneous frictional collisions in spatial multibody systems.Uchida, Thomas K; Sherman, Michael A; Delp, Scott LProceedings. Mathematical, physical, and engineering sciences.2015 May 08;27547093
Predicting Social Anxiety Treatment Outcome Based on Therapeutic Email Conversations.Hoogendoorn, Mark; Berger, Thomas; Schulz, Ava; Stolz, Timo; Szolovits, PeterIEEE journal of biomedical and health informatics.2017 Sep;27542187
Integration of 60,000 exomes and ACMG guidelines question the role of Catecholaminergic Polymorphic Ventricular Tachycardia-associated variants.Paludan-Müller, C; Ahlberg, G; Ghouse, J; Herfelt, C; Svendsen, J H; Haunsø, S; Kanters, J K; Olesen, M SClinical genetics.2017 01;27538377
Analysis of protein-coding genetic variation in 60,706 humans.Lek, Monkol; Karczewski, Konrad J; Minikel, Eric V; Samocha, Kaitlin E; Banks, Eric; Fennell, Timothy; O'Donnell-Luria, Anne H; Ware, James S; Hill, Andrew J; Cummings, Beryl B; Tukiainen, Taru; Birnbaum, Daniel P; Kosmicki, Jack A; Duncan, Laramie E; Estrada, Karol; Zhao, Fengmei; Zou, James; Pierce-Hoffman, Emma; Berghout, Joanne; Cooper, David N; Deflaux, Nicole; DePristo, Mark; Do, Ron; Flannick, Jason; Fromer, Menachem; Gauthier, Laura; Goldstein, Jackie; Gupta, Namrata; Howrigan, Daniel; Kiezun, Adam; Kurki, Mitja I; Moonshine, Ami Levy; Natarajan, Pradeep; Orozco, Lorena; Peloso, Gina M; Poplin, Ryan; Rivas, Manuel A; Ruano-Rubio, Valentin; Rose, Samuel A; Ruderfer, Douglas M; Shakir, Khalid; Stenson, Peter D; Stevens, Christine; Thomas, Brett P; Tiao, Grace; Tusie-Luna, Maria T; Weisburd, Ben; Won, Hong-Hee; Yu, Dongmei; Altshuler, David M; Ardissino, Diego; Boehnke, Michael; Danesh, John; Donnelly, Stacey; Elosua, Roberto; Florez, Jose C; Gabriel, Stacey B; Getz, Gad; Glatt, Stephen J; Hultman, Christina M; Kathiresan, Sekar; Laakso, Markku; McCarroll, Steven; McCarthy, Mark I; McGovern, Dermot; McPherson, Ruth; Neale, Benjamin M; Palotie, Aarno; Purcell, Shaun M; Saleheen, Danish; Scharf, Jeremiah M; Sklar, Pamela; Sullivan, Patrick F; Tuomilehto, Jaakko; Tsuang, Ming T; Watkins, Hugh C; Wilson, James G; Daly, Mark J; MacArthur, Daniel G; Exome Aggregation ConsortiumNature.2016 08 18;27535533
Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm.Chu, Li-Fang; Leng, Ning; Zhang, Jue; Hou, Zhonggang; Mamott, Daniel; Vereide, David T; Choi, Jeea; Kendziorski, Christina; Stewart, Ron; Thomson, James AGenome biology.2016 Aug 17;27534536
Patterns of genic intolerance of rare copy number variation in 59,898 human exomes.Ruderfer, Douglas M; Hamamsy, Tymor; Lek, Monkol; Karczewski, Konrad J; Kavanagh, David; Samocha, Kaitlin E; Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel G; Fromer, Menachem; Purcell, Shaun MNature genetics.2016 Oct;27533299
A comprehensive and scalable database search system for metaproteomics.Chatterjee, Sandip; Stupp, Gregory S; Park, Sung Kyu Robin; Ducom, Jean-Christophe; Yates 3rd, John R; Su, Andrew I; Wolan, Dennis WBMC genomics.2016 08 16;27528457
Leveraging Citizen Science and Information Technology for Population Physical Activity Promotion.King, Abby C; Winter, Sandra J; Sheats, Jylana L; Rosas, Lisa G; Buman, Matthew P; Salvo, Deborah; Rodriguez, Nicole M; Seguin, Rebecca A; Moran, Mika; Garber, Randi; Broderick, Bonnie; Zieff, Susan G; Sarmiento, Olga Lucia; Gonzalez, Silvia A; Banchoff, Ann; Dommarco, Juan RiveraTranslational journal of the American College of Sports Medicine.2016 May 15;27525309
Blockwise Human Brain Network Visual Comparison Using NodeTrix Representation.Yang, Xinsong; Shi, Lei; Daianu, Madelaine; Tong, Hanghang; Liu, Qingsong; Thompson, PaulIEEE transactions on visualization and computer graphics.2017 Jan;27514058
APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE.Zhang, Jie; Stonnington, Cynthia; Li, Qingyang; Shi, Jie; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Thompson, Paul M; Ye, Jieping; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2016 Apr;27499829
MORPHOMETRIC ANALYSIS OF HIPPOCAMPUS AND LATERAL VENTRICLE REVEALS REGIONAL DIFFERENCE BETWEEN COGNITIVELY STABLE AND DECLINING PERSONS.Zhang, Wen; Shi, Jie; Stonnington, Cynthia; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2016 Apr;27499828
Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations.Dinov, Ivo D; Heavner, Ben; Tang, Ming; Glusman, Gustavo; Chard, Kyle; Darcy, Mike; Madduri, Ravi; Pa, Judy; Spino, Cathie; Kesselman, Carl; Foster, Ian; Deutsch, Eric W; Price, Nathan D; Van Horn, John D; Ames, Joseph; Clark, Kristi; Hood, Leroy; Hampstead, Benjamin M; Dauer, William; Toga, Arthur WPloS one.2016;27494614
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.Deutsch, Eric W; Overall, Christopher M; Van Eyk, Jennifer E; Baker, Mark S; Paik, Young-Ki; Weintraub, Susan T; Lane, Lydie; Martens, Lennart; Vandenbrouck, Yves; Kusebauch, Ulrike; Hancock, William S; Hermjakob, Henning; Aebersold, Ruedi; Moritz, Robert L; Omenn, Gilbert SJournal of proteome research.2016 Nov 04;27490519
Quantifying patterns of brain activity: Distinguishing unaffected siblings from participants with ADHD and healthy individuals.Wolfers, Thomas; van Rooij, Daan; Oosterlaan, Jaap; Heslenfeld, Dirk; Hartman, Catharina A; Hoekstra, Pieter J; Beckmann, Christian F; Franke, Barbara; Buitelaar, Jan K; Marquand, Andre FNeuroImage. Clinical.2016;27489770
Prioritizing individual genetic variants after kernel machine testing using variable selection.He, Qianchuan; Cai, Tianxi; Liu, Yang; Zhao, Ni; Harmon, Quaker E; Almli, Lynn M; Binder, Elisabeth B; Engel, Stephanie M; Ressler, Kerry J; Conneely, Karen N; Lin, Xihong; Wu, Michael CGenetic epidemiology.2016 Dec;27488097
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications.Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Beavis, Ronald C; Overall, Christopher M; Deutsch, Eric WJournal of proteome research.2016 Nov 04;27487407
KCNE4 and KCNE5: K(+) channel regulation and cardiac arrhythmogenesis.Abbott, Geoffrey WGene.2016 Nov 30;27484720
Connecting the Dots: From Big Data to Healthy Heart.Lau, Edward; Watson, Karol E; Ping, PeipeiCirculation.2016 Aug 02;27481999
Efficient Queries of Stand-off Annotations for Natural Language Processing on Electronic Medical Records.Luo, Yuan; Szolovits, PeterBiomedical informatics insights.2016;27478379
Heterochronicity of white matter development and aging explains regional patient control differences in schizophrenia.Kochunov, Peter; Ganjgahi, Habib; Winkler, Anderson; Kelly, Sinead; Shukla, Dinesh K; Du, Xiaoming; Jahanshad, Neda; Rowland, Laura; Sampath, Hemalatha; Patel, Binish; O'Donnell, Patricio; Xie, Zhiyong; Paciga, Sara A; Schubert, Christian R; Chen, Jian; Zhang, Guohao; Thompson, Paul M; Nichols, Thomas E; Hong, L ElliotHuman brain mapping.2016 Dec;27477775
Brain structural changes following adaptive cognitive training assessed by Tensor-Based Morphometry (TBM).Colom, Roberto; Hua, Xue; Martínez, Kenia; Burgaleta, Miguel; Román, Francisco J; Gunter, Jeffrey L; Carmona, Susanna; Jaeggi, Susanne M; Thompson, Paul MNeuropsychologia.2016 Oct;27477628
Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability.Jiang, Peng; Nelson, Jeffrey D; Leng, Ning; Collins, Michael; Swanson, Scott; Dewey, Colin N; Thomson, James A; Stewart, RonDevelopmental biology.2017 06 15;27475628
Comparison of genomic data via statistical distribution.Amiri, Saeid; Dinov, Ivo DJournal of theoretical biology.2016 Oct 21;27460589
Environment-Wide Association Study of Blood Pressure in the National Health and Nutrition Examination Survey (1999-2012).McGinnis, Denise P; Brownstein, John S; Patel, Chirag JScientific reports.2016 Jul 26;27457472
Correction: Effects of Three Motivationally Targeted Mobile Device Applications on Initial Physical Activity and Sedentary Behavior Change in Midlife and Older Adults: A Randomized Trial.PLOS ONE StaffPloS one.2016;27442244
On longitudinal prediction with time-to-event outcome: Comparison of modeling options.Maziarz, Marlena; Heagerty, Patrick; Cai, Tianxi; Zheng, YingyeBiometrics.2017 Mar;27438160
Volumetric and shape analyses of subcortical structures in United States service members with mild traumatic brain injury.Tate, David F; Wade, Benjamin S C; Velez, Carmen S; Drennon, Ann Marie; Bolzenius, Jacob; Gutman, Boris A; Thompson, Paul M; Lewis, Jeffrey D; Wilde, Elisabeth A; Bigler, Erin D; Shenton, Martha E; Ritter, John L; York, Gerald EJournal of neurology.2016 Oct;27435967
Crowdsourcing biomedical research: leveraging communities as innovation engines.Saez-Rodriguez, Julio; Costello, James C; Friend, Stephen H; Kellen, Michael R; Mangravite, Lara; Meyer, Pablo; Norman, Thea; Stolovitzky, GustavoNature reviews. Genetics.2016 07 15;27418159
Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq.Liu, Peng; Sanalkumar, Rajendran; Bresnick, Emery H; Kele?, Sündüz; Dewey, Colin NGenome research.2016 08;27405803
Network Lasso: Clustering and Optimization in Large Graphs.Hallac, David; Leskovec, Jure; Boyd, StephenKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;27398260
Full-Body Musculoskeletal Model for Muscle-Driven Simulation of Human Gait.Rajagopal, Apoorva; Dembia, Christopher L; DeMers, Matthew S; Delp, Denny D; Hicks, Jennifer L; Delp, Scott LIEEE transactions on bio-medical engineering.2016 10;27392337
Interplay between stress response genes associated with attention-deficit hyperactivity disorder and brain volume.van der Meer, D; Hoekstra, P J; Bralten, J; van Donkelaar, M; Heslenfeld, D J; Oosterlaan, J; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C AGenes, brain, and behavior.2016 09;27391809
BigDebug: Debugging Primitives for Interactive Big Data Processing in Spark.Gulzar, Muhammad Ali; Interlandi, Matteo; Yoo, Seunghyun; Tetali, Sai Deep; Condie, Tyson; Millstein, Todd; Kim, MiryungProceedings - International Conference on Software Engineering. International Conference on Software Engineering.2016 May;27390389
Using automatically extracted information from mammography reports for decision-support.Bozkurt, Selen; Gimenez, Francisco; Burnside, Elizabeth S; Gulkesen, Kemal H; Rubin, Daniel LJournal of biomedical informatics.2016 Aug;27388877
Higher-order organization of complex networks.Benson, Austin R; Gleich, David F; Leskovec, JureScience (New York, N.Y.).2016 Jul 08;27387949
Genetic Dissection of Cardiac Remodeling in an Isoproterenol-Induced Heart Failure Mouse Model.Wang, Jessica Jen-Chu; Rau, Christoph; Avetisyan, Rozeta; Ren, Shuxun; Romay, Milagros C; Stolin, Gabriel; Gong, Ke Wei; Wang, Yibin; Lusis, Aldons JPLoS genetics.2016 07;27385019
Mapping Murine Corneal Neovascularization and Weight Loss Virulence Determinants in the Herpes Simplex Virus 1 Genome and the Detection of an Epistatic Interaction between the UL and IRS/US Regions.Lee, Kyubin; Kolb, Aaron W; Larsen, Inna; Craven, Mark; Brandt, Curtis RJournal of virology.2016 09 15;27384650
Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.Haeussler, Maximilian; Schönig, Kai; Eckert, Hélène; Eschstruth, Alexis; Mianné, Joffrey; Renaud, Jean-Baptiste; Schneider-Maunoury, Sylvie; Shkumatava, Alena; Teboul, Lydia; Kent, Jim; Joly, Jean-Stephane; Concordet, Jean-PaulGenome biology.2016 Jul 05;27380939
The C677T variant in MTHFR modulates associations between blood-based and cerebrospinal fluid biomarkers of neurodegeneration.Roussotte, Florence F; Narr, Katherine L; Small, Gary W; Thompson, Paul M; Alzheimer?s Disease Neuroimaging InitiativeNeuroreport.2016 Aug 17;27380243
Using the laws of thermodynamics to understand how matrix metalloproteinases coordinate the myocardial response to injury.Iyer, Rugmani Padmanabhan; Jung, Mira; Lindsey, Merry LMetalloproteinases in medicine.2015;27376092
CVXPY: A Python-Embedded Modeling Language for Convex Optimization.Diamond, Steven; Boyd, StephenJournal of machine learning research : JMLR.2016 Apr;27375369
Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems.Lam, Maggie P Y; Venkatraman, Vidya; Xing, Yi; Lau, Edward; Cao, Quan; Ng, Dominic C M; Su, Andrew I; Ge, Junbo; Van Eyk, Jennifer E; Ping, PeipeiJournal of proteome research.2016 Nov 04;27356587
Effects of Three Motivationally Targeted Mobile Device Applications on Initial Physical Activity and Sedentary Behavior Change in Midlife and Older Adults: A Randomized Trial.King, Abby C; Hekler, Eric B; Grieco, Lauren A; Winter, Sandra J; Sheats, Jylana L; Buman, Matthew P; Banerjee, Banny; Robinson, Thomas N; Cirimele, JessePloS one.2016;27352250
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis.Noren, David P; Long, Byron L; Norel, Raquel; Rrhissorrakrai, Kahn; Hess, Kenneth; Hu, Chenyue Wendy; Bisberg, Alex J; Schultz, Andre; Engquist, Erik; Liu, Li; Lin, Xihui; Chen, Gregory M; Xie, Honglei; Hunter, Geoffrey A M; Boutros, Paul C; Stepanov, Oleg; DREAM 9 AML-OPC Consortium; Norman, Thea; Friend, Stephen H; Stolovitzky, Gustavo; Kornblau, Steven; Qutub, Amina APLoS computational biology.2016 06;27351836
Disentangling the autism-anxiety overlap: fMRI of reward processing in a community-based longitudinal study.Mikita, N; Simonoff, E; Pine, D S; Goodman, R; Artiges, E; Banaschewski, T; Bokde, A L; Bromberg, U; Büchel, C; Cattrell, A; Conrod, P J; Desrivières, S; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Heinz, A; Ittermann, B; Jurk, S; Martinot, J L; Paillère Martinot, M L; Nees, F; Papadopoulos Orfanos, D; Paus, T; Poustka, L; Smolka, M N; Walter, H; Whelan, R; Schumann, G; Stringaris, ATranslational psychiatry.2016 06 28;27351599
Identification of Gene Loci That Overlap Between Schizophrenia and Educational Attainment.Le Hellard, Stéphanie; Wang, Yunpeng; Witoelar, Aree; Zuber, Verena; Bettella, Francesco; Hugdahl, Kenneth; Espeseth, Thomas; Steen, Vidar M; Melle, Ingrid; Desikan, Rahul; Schork, Andrew J; Thompson, Wesley K; Dale, Anders M; Djurovic, Srdjan; Andreassen, Ole A; Schizophrenia Working Group of the Psychiatric Genomics ConsortiumSchizophrenia bulletin.2017 05 01;27338279
A Utility/Cost Analysis of Breast Cancer Risk Prediction Algorithms.Abbey, Craig K; Wu, Yirong; Burnside, Elizabeth S; Wunderlich, Adam; Samuelson, Frank W; Boone, John MProceedings of SPIE--the International Society for Optical Engineering.2016 Feb 27;27335532
Taming the Wild: A Unified Analysis of Hogwild!-Style Algorithms.De Sa, Christopher; Zhang, Ce; Olukotun, Kunle; Ré, ChristopherAdvances in neural information processing systems.2015 Dec;27330264
Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals.Chikina, Maria; Robinson, Joseph D; Clark, Nathan LMolecular biology and evolution.2016 Sep;27329977
Caffe con Troll: Shallow Ideas to Speed Up Deep Learning.Hadjis, Stefan; Abuzaid, Firas; Zhang, Ce; Ré, ChristopherProceedings of the Fourth Workshop on Data analytics at sCale (DanaC 2015) : May 31st, 2015, Melbourne, Australia. Workshop on Data Analytics in the Cloud (4th : 2015 : Melbourne, Vic.).2015 May-Jun;27314106
What Is Going on Inside the Arrows? Discovering the Hidden Springs in Causal Models.Murray-Watters, Alexander; Glymour, ClarkPhilosophy of science.2015 Oct;27313331
PRKCE gene encoding protein kinase C-epsilon-Dual roles at sarcomeres and mitochondria in cardiomyocytes.Scruggs, Sarah B; Wang, Ding; Ping, PeipeiGene.2016 Sep 15;27312950
DeepMeSH: deep semantic representation for improving large-scale MeSH indexing.Peng, Shengwen; You, Ronghui; Wang, Hongning; Zhai, Chengxiang; Mamitsuka, Hiroshi; Zhu, ShanfengBioinformatics (Oxford, England).2016 06 15;27307646
Using genomic annotations increases statistical power to detect eGenes.Duong, Dat; Zou, Jennifer; Hormozdiari, Farhad; Sul, Jae Hoon; Ernst, Jason; Han, Buhm; Eskin, EleazarBioinformatics (Oxford, England).2016 Jun 15;27307612
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.Bravo, Àlex; Li, Tong Shu; Su, Andrew I; Good, Benjamin M; Furlong, Laura IDatabase : the journal of biological databases and curation.2016;27307137
Integrated analysis of gray and white matter alterations in attention-deficit/hyperactivity disorder.Francx, Winke; Llera, Alberto; Mennes, Maarten; Zwiers, Marcel P; Faraone, Stephen V; Oosterlaan, Jaap; Heslenfeld, Dirk; Hoekstra, Pieter J; Hartman, Catharina A; Franke, Barbara; Buitelaar, Jan K; Beckmann, Christian FNeuroImage. Clinical.2016;27298764
Learning mixed graphical models with separate sparsity parameters and stability-based model selection.Sedgewick, Andrew J; Shi, Ivy; Donovan, Rory M; Benos, Panayiotis VBMC bioinformatics.2016 Jun 06;27294886
Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium.Salomonis, Nathan; Dexheimer, Phillip J; Omberg, Larsson; Schroll, Robin; Bush, Stacy; Huo, Jeffrey; Schriml, Lynn; Ho Sui, Shannan; Keddache, Mehdi; Mayhew, Christopher; Shanmukhappa, Shiva Kumar; Wells, James; Daily, Kenneth; Hubler, Shane; Wang, Yuliang; Zambidis, Elias; Margolin, Adam; Hide, Winston; Hatzopoulos, Antonis K; Malik, Punam; Cancelas, Jose A; Aronow, Bruce J; Lutzko, CarolynStem cell reports.;27293150
Imputing Phenotypes for Genome-wide Association Studies.Hormozdiari, Farhad; Kang, Eun Yong; Bilow, Michael; Ben-David, Eyal; Vulpe, Chris; McLachlan, Stela; Lusis, Aldons J; Han, Buhm; Eskin, EleazarAmerican journal of human genetics.2016 Jul 7;27292110
MULTI-RESOLUTION STATISTICAL ANALYSIS ON GRAPH STRUCTURED DATA IN NEUROIMAGING.Kim, Won Hwa; Singh, Vikas; Chung, Moo K; Adluru, Nagesh; Bendlin, Barbara B; Johnson, Sterling CProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;27284387
Rapidly Mixing Gibbs Sampling for a Class of Factor Graphs Using Hierarchy Width.De Sa, Christopher; Zhang, Ce; Olukotun, Kunle; Ré, ChristopherAdvances in neural information processing systems.2015 Dec;27279724
Discriminatory power of common genetic variants in personalized breast cancer diagnosis.Wu, Yirong; Abbey, Craig K; Liu, Jie; Ong, Irene; Peissig, Peggy; Onitilo, Adedayo A; Fan, Jun; Yuan, Ming; Burnside, Elizabeth SProceedings of SPIE--the International Society for Optical Engineering.2016 Feb 27;27279675
A Database Framework for Classifier Engineering.Kimelfeld, Benny; Ré, ChristopherCEUR workshop proceedings.2015 May;27274719
Opinion: Big data biomedicine offers big higher education opportunities.Van Horn, John DarrellProceedings of the National Academy of Sciences of the United States of America.2016 Jun 7;27274038
Kernel machine score test for pathway analysis in the presence of semi-competing risks.Neykov, Matey; Hejblum, Boris P; Sinnott, Jennifer AStatistical methods in medical research.2016 Jun 02;27255336
MET network in PubMed: a text-mined network visualization and curation system.Dai, Hong-Jie; Su, Chu-Hsien; Lai, Po-Ting; Huang, Ming-Siang; Jonnagaddala, Jitendra; Rose Jue, Toni; Rao, Shruti; Chou, Hui-Jou; Milacic, Marija; Singh, Onkar; Syed-Abdul, Shabbir; Hsu, Wen-LianDatabase : the journal of biological databases and curation.2016;27242035
Knowledge gaps to understanding cardiac macrophage polarization following myocardial infarction.Lindsey, Merry L; Saucerman, Jeffrey J; DeLeon-Pennell, Kristine YBiochimica et biophysica acta.2016 Dec;27240543
Robust Multi-Network Clustering via Joint Cross-Domain Cluster Alignment.Liu, Rui; Cheng, Wei; Tong, Hanghang; Wang, Wei; Zhang, XiangProceedings. IEEE International Conference on Data Mining.2015 Nov;27239167
A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions.Fotuhi Siahpirani, Alireza; Ay, Ferhat; Roy, SushmitaGenome biology.2016 May 27;27233632
ApoE ?4 Is Associated With Cognition, Brain Integrity, and Atrophy in HIV Over Age 60.Wendelken, Lauren A; Jahanshad, Neda; Rosen, Howard J; Busovaca, Edgar; Allen, Isabel; Coppola, Giovanni; Adams, Collin; Rankin, Katherine P; Milanini, Benedetta; Clifford, Katherine; Wojta, Kevin; Nir, Talia M; Gutman, Boris A; Thompson, Paul M; Valcour, VictorJournal of acquired immune deficiency syndromes (1999).2016 Dec 01;27228100
Developmentally Sensitive Interaction Effects of Genes and the Social Environment on Total and Subcortical Brain Volumes.Richards, Jennifer S; Arias Vásquez, Alejandro; Franke, Barbara; Hoekstra, Pieter J; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Buitelaar, Jan K; Hartman, Catharina APloS one.2016;27218681
Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging: Structural connectivity of the human brain.Li, Junning; Shi, Yonggang; Toga, Arthur WIEEE signal processing magazine.2016 May;27212872
Genome Editing with CRISPR-Cas9: Can It Get Any Better?Haeussler, Maximilian; Concordet, Jean-PaulJournal of genetics and genomics = Yi chuan xue bao.2016 May 20;27210042
MMP-9 signaling in the left ventricle following myocardial infarction.Iyer, Rugmani Padmanabhan; Jung, Mira; Lindsey, Merry LAmerican journal of physiology. Heart and circulatory physiology.2016 Jul 01;27208160
Reactome from a WikiPathways Perspective.Bohler, Anwesha; Wu, Guanming; Kutmon, Martina; Pradhana, Leontius Adhika; Coort, Susan L; Hanspers, Kristina; Haw, Robin; Pico, Alexander R; Evelo, Chris TPLoS computational biology.2016 05;27203685
A comprehensive tractography study of patients with bipolar disorder and their unaffected siblings.Sprooten, Emma; Barrett, Jennifer; McKay, D Reese; Knowles, Emma E; Mathias, Samuel R; Winkler, Anderson M; Brumbaugh, Margaret S; Landau, Stefanie; Cyr, Lindsay; Kochunov, Peter; Glahn, David CHuman brain mapping.;27198848
Causal discovery and inference: concepts and recent methodological advances.Spirtes, Peter; Zhang, KunApplied informatics.2016;27195202
Attention-deficit/hyperactivity disorder.Faraone, Stephen V; Asherson, Philip; Banaschewski, Tobias; Biederman, Joseph; Buitelaar, Jan K; Ramos-Quiroga, Josep Antoni; Rohde, Luis Augusto; Sonuga-Barke, Edmund J S; Tannock, Rosemary; Franke, BarbaraNature reviews. Disease primers.2015 08 06;27189265
Rate-Agnostic (Causal) Structure Learning.Plis, Sergey; Danks, David; Freeman, Cynthia; Calhoun, VinceAdvances in neural information processing systems.2015 Dec;27182188
Markov Boundary Discovery with Ridge Regularized Linear Models.Strobl, Eric V; Visweswaran, ShyamJournal of causal inference.2016 Mar;27170915
Testing differential susceptibility: Plasticity genes, the social environment, and their interplay in adolescent response inhibition.Richards, Jennifer S; Arias Vásquez, Alejandro; van Rooij, Daan; van der Meer, Dennis; Franke, Barbara; Hoekstra, Pieter J; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Hartman, Catharina A; Buitelaar, Jan KThe world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry.2017 Jun;27170266
Probability Distributome: A Web Computational Infrastructure for Exploring the Properties, Interrelations, and Applications of Probability Distributions.Dinov, Ivo D; Siegrist, Kyle; Pearl, Dennis K; Kalinin, Alexandr; Christou, NicolasComputational statistics.2016 Jun;27158191
High-performance web services for querying gene and variant annotation.Xin, Jiwen; Mark, Adam; Afrasiabi, Cyrus; Tsueng, Ginger; Juchler, Moritz; Gopal, Nikhil; Stupp, Gregory S; Putman, Timothy E; Ainscough, Benjamin J; Griffith, Obi L; Torkamani, Ali; Whetzel, Patricia L; Mungall, Christopher J; Mooney, Sean D; Su, Andrew I; Wu, ChunleiGenome biology.2016 May 06;27154141
Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.Gangavarapu, Karthik; Babji, Vyshakh; Meißner, Tobias; Su, Andrew I; Good, Benjamin MBioinformatics (Oxford, England).2016 Jul 01;27153723
Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks.Blatti, Charles; Sinha, SaurabhBioinformatics (Oxford, England).2016 Jul 15;27153592
Facilitating a culture of responsible and effective sharing of cancer genome data.Siu, Lillian L; Lawler, Mark; Haussler, David; Knoppers, Bartha Maria; Lewin, Jeremy; Vis, Daniel J; Liao, Rachel G; Andre, Fabrice; Banks, Ian; Barrett, J Carl; Caldas, Carlos; Camargo, Anamaria Aranha; Fitzgerald, Rebecca C; Mao, Mao; Mattison, John E; Pao, William; Sellers, William R; Sullivan, Patrick; Teh, Bin Tean; Ward, Robyn L; ZenKlusen, Jean Claude; Sawyers, Charles L; Voest, Emile ENature medicine.2016 05 05;27149219
An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem.Lu, Songjian; Mandava, Gunasheil; Yan, Gaibo; Lu, XinghuaAlgorithms for molecular biology : AMB.2016;27148394
MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays.Li, Hui; Zhu, Yitan; Burnside, Elizabeth S; Drukker, Karen; Hoadley, Katherine A; Fan, Cheng; Conzen, Suzanne D; Whitman, Gary J; Sutton, Elizabeth J; Net, Jose M; Ganott, Marie; Huang, Erich; Morris, Elizabeth A; Perou, Charles M; Ji, Yuan; Giger, Maryellen LRadiology.2016 Nov;27144536
Mindtagger: A Demonstration of Data Labeling in Knowledge Base Construction.Shin, Jaeho; Ré, Christopher; Cafarella, MichaelProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;27144082
Incremental Knowledge Base Construction Using DeepDive.Shin, Jaeho; Wu, Sen; Wang, Feiran; De Sa, Christopher; Zhang, Ce; Ré, ChristopherProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Jul;27144081
Cortical abnormalities in adults and adolescents with major depression based on brain scans from 20 cohorts worldwide in the ENIGMA Major Depressive Disorder Working Group.Schmaal, L; Hibar, D P; Sämann, P G; Hall, G B; Baune, B T; Jahanshad, N; Cheung, J W; van Erp, T G M; Bos, D; Ikram, M A; Vernooij, M W; Niessen, W J; Tiemeier, H; Hofman, A; Wittfeld, K; Grabe, H J; Janowitz, D; Bülow, R; Selonke, M; Völzke, H; Grotegerd, D; Dannlowski, U; Arolt, V; Opel, N; Heindel, W; Kugel, H; Hoehn, D; Czisch, M; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Wright, M J; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Martin, N G; Gillespie, N A; Goya-Maldonado, R; Gruber, O; Krämer, B; Hatton, S N; Lagopoulos, J; Hickie, I B; Frodl, T; Carballedo, A; Frey, E M; van Velzen, L S; Penninx, B W J H; van Tol, M-J; van der Wee, N J; Davey, C G; Harrison, B J; Mwangi, B; Cao, B; Soares, J C; Veer, I M; Walter, H; Schoepf, D; Zurowski, B; Konrad, C; Schramm, E; Normann, C; Schnell, K; Sacchet, M D; Gotlib, I H; MacQueen, G M; Godlewska, B R; Nickson, T; McIntosh, A M; Papmeyer, M; Whalley, H C; Hall, J; Sussmann, J E; Li, M; Walter, M; Aftanas, L; Brack, I; Bokhan, N A; Thompson, P M; Veltman, D JMolecular psychiatry.2017 Jun;27137745
Whole-Genome Sequencing of a Healthy Aging Cohort.Erikson, Galina A; Bodian, Dale L; Rueda, Manuel; Molparia, Bhuvan; Scott, Erick R; Scott-Van Zeeland, Ashley A; Topol, Sarah E; Wineinger, Nathan E; Niederhuber, John E; Topol, Eric J; Torkamani, AliCell.2016 May 05;27114037
Cognitive profiles and heritability estimates in the Old Order Amish.Kuehner, Ryan M; Kochunov, Peter; Nugent, Katie L; Jurius, Deanna E; Savransky, Anya; Gaudiot, Christopher; Bruce, Heather A; Gold, James; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L ElliotPsychiatric genetics.2016 08;27105171
Transformation Invariant Control of Voxel-Wise False Discovery Rate.Li, Junning; Shi, Yonggang; Toga, Arthur WIEEE transactions on medical imaging.2016 10;27101602
Developing a clinical utility framework to evaluate prediction models in radiogenomics.Wu, Yirong; Liu, Jie; Del Rio, Alejandro Munoz; Page, David C; Alagoz, Oguzhan; Peissig, Peggy; Onitilo, Adedayo A; Burnside, Elizabeth SProceedings of SPIE--the International Society for Optical Engineering.2015 Feb 21;27095854
A crowdsourcing workflow for extracting chemical-induced disease relations from free text.Li, Tong Shu; Bravo, Àlex; Furlong, Laura I; Good, Benjamin M; Su, Andrew IDatabase : the journal of biological databases and curation.2016;27087308
Utilizing uncoded consultation notes from electronic medical records for predictive modeling of colorectal cancer.Hoogendoorn, Mark; Szolovits, Peter; Moons, Leon M G; Numans, Mattijs EArtificial intelligence in medicine.2016 May;27085847
A Projection free method for Generalized Eigenvalue Problem with a nonsmooth Regularizer.Hwang, Seong Jae; Collins, Maxwell D; Ravi, Sathya N; Ithapu, Vamsi K; Adluru, Nagesh; Johnson, Sterling C; Singh, VikasProceedings. IEEE International Conference on Computer Vision.2015 Dec;27081374
Ringo: Interactive Graph Analytics on Big-Memory Machines.Perez, Yonathan; Sosi?, Rok; Banerjee, Arijit; Puttagunta, Rohan; Raison, Martin; Shah, Pararth; Leskovec, JureProceedings. ACM-Sigmod International Conference on Management of Data.2015 May-Jun;27081215
Machine Reading for Extraction of Bacteria and Habitat Taxonomies.Kordjamshidi, Parisa; Massa, Wouter; Provoost, Thomas; Moens, Marie-FrancineBiomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference).2015 Jan;27077141
Donor Retention in Online Crowdfunding Communities: A Case Study of DonorsChoose.org.Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2015 May;27077139
Mesochronal Structure Learning.Plis, Sergey; Danks, David; Yang, JianyuUncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence.2015 Jul 12;27076793
Ventral Striatum Connectivity During Reward Anticipation in Adolescent Smokers.Jollans, Lee; Zhipeng, Cao; Icke, Ilknur; Greene, Ciara; Kelly, Clare; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Whelan, RobertDevelopmental neuropsychology.2016 Jan-Mar;27074029
Effect of Electroconvulsive Therapy on Striatal Morphometry in Major Depressive Disorder.Wade, Benjamin S C; Joshi, Shantanu H; Njau, Stephanie; Leaver, Amber M; Vasavada, Megha; Woods, Roger P; Gutman, Boris A; Thompson, Paul M; Espinoza, Randall; Narr, Katherine LNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.2016 09;27067127
ExpertBayes: Automatically refining manually built Bayesian networks.Almeida, Ezilda; Ferreira, Pedro; Vinhoza, Tiago; Dutra, Inês; Li, Jingwei; Wu, Yirong; Burnside, ElizabethProceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications.2014 Dec;27066596
Influence of APOE Genotype on Hippocampal Atrophy over Time - An N=1925 Surface-Based ADNI Study.Li, Bolun; Shi, Jie; Gutman, Boris A; Baxter, Leslie C; Thompson, Paul M; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging InitiativePloS one.2016;27065111
Query-Based Outlier Detection in Heterogeneous Information Networks.Kuck, Jonathan; Zhuang, Honglei; Yan, Xifeng; Cam, Hasan; Han, JiaweiAdvances in database technology : proceedings. International Conference on Extending Database Technology.2015 Mar;27064397
Systematic correlation of environmental exposure and physiological and self-reported behaviour factors with leukocyte telomere length.Patel, Chirag J; Manrai, Arjun K; Corona, Erik; Kohane, Isaac SInternational journal of epidemiology.2016 Apr 8;27059547
Design and computational analysis of single-cell RNA-sequencing experiments.Bacher, Rhonda; Kendziorski, ChristinaGenome biology.2016 Apr 07;27052890
Adolescent behavioral and neural reward sensitivity: a test of the differential susceptibility theory.Richards, J S; Arias Vásquez, A; von Rhein, D; van der Meer, D; Franke, B; Hoekstra, P J; Heslenfeld, D J; Oosterlaan, J; Faraone, S V; Buitelaar, J K; Hartman, C ATranslational psychiatry.2016 Apr 05;27045841
Brainhack: a collaborative workshop for the open neuroscience community.Cameron Craddock, R; S Margulies, Daniel; Bellec, Pierre; Nolan Nichols, B; Alcauter, Sarael; A Barrios, Fernando; Burnod, Yves; J Cannistraci, Christopher; Cohen-Adad, Julien; De Leener, Benjamin; Dery, Sebastien; Downar, Jonathan; Dunlop, Katharine; R Franco, Alexandre; Seligman Froehlich, Caroline; J Gerber, Andrew; S Ghosh, Satrajit; J Grabowski, Thomas; Hill, Sean; Sólon Heinsfeld, Anibal; Matthew Hutchison, R; Kundu, Prantik; R Laird, Angela; Liew, Sook-Lei; J Lurie, Daniel; G McLaren, Donald; Meneguzzi, Felipe; Mennes, Maarten; Mesmoudi, Salma; O'Connor, David; H Pasaye, Erick; Peltier, Scott; Poline, Jean-Baptiste; Prasad, Gautam; Fraga Pereira, Ramon; Quirion, Pierre-Olivier; Rokem, Ariel; S Saad, Ziad; Shi, Yonggang; C Strother, Stephen; Toro, Roberto; Q Uddin, Lucina; D Van Horn, John; W Van Meter, John; C Welsh, Robert; Xu, TingGigaScience.2016;27042293
Interpolation on the manifold of K component GMMs.Kim, Hyunwoo J; Adluru, Nagesh; Banerjee, Monami; Vemuri, Baba C; Singh, VikasProceedings. IEEE International Conference on Computer Vision.2015 Dec;27042169
On Statistical Analysis of Neuroimages with Imperfect Registration.Kim, Won Hwa; Ravi, Sathya N; Johnson, Sterling C; Okonkwo, Ozioma C; Singh, VikasProceedings. IEEE International Conference on Computer Vision.2015 Dec;27042168
CIDER: Enabling Robustness-Power Tradeoffs on a Computational Eyeglass.Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Ganesan, Deepak; Marlin, Benjamin; Salthouse, ChristopherProceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking.2015 Sep;27042165
Multiple testing correction in linear mixed models.Joo, Jong Wha J; Hormozdiari, Farhad; Han, Buhm; Eskin, EleazarGenome biology.2016;27039378
KnowSim: A Document Similarity Measure on Structured Heterogeneous Information Networks.Wang, Chenguang; Song, Yangqiu; Li, Haoran; Zhang, Ming; Han, JiaweiProceedings. IEEE International Conference on Data Mining.2015 Nov;27034626
Mining Multi-Aspect Reflection of News Events in Twitter: Discovery, Linking and Presentation.Wang, Jingjing; Tong, Wenzhu; Yu, Hongkun; Li, Min; Ma, Xiuli; Cai, Haoyan; Hanratty, Tim; Han, JiaweiProceedings. IEEE International Conference on Data Mining.2015 Nov;27034625
Long-read sequence assembly of the gorilla genome.Gordon, David; Huddleston, John; Chaisson, Mark J P; Hill, Christopher M; Kronenberg, Zev N; Munson, Katherine M; Malig, Maika; Raja, Archana; Fiddes, Ian; Hillier, LaDeana W; Dunn, Christopher; Baker, Carl; Armstrong, Joel; Diekhans, Mark; Paten, Benedict; Shendure, Jay; Wilson, Richard K; Haussler, David; Chin, Chen-Shan; Eichler, Evan EScience (New York, N.Y.).2016 Apr 01;27034376
Autism spectrum disorder and attention-deficit/hyperactivity disorder in early childhood: A review of unique and shared characteristics and developmental antecedents.Visser, Janne C; Rommelse, Nanda N J; Greven, Corina U; Buitelaar, Jan KNeuroscience and biobehavioral reviews.2016 06;27026637
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.Putman, Tim E; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Wu, Chunlei; Su, Andrew I; Good, Benjamin MDatabase : the journal of biological databases and curation.2016;27022157
Efficient Learning of Continuous-Time Hidden Markov Models for Disease Progression.Liu, Yu-Ying; Li, Shuang; Li, Fuxin; Song, Le; Rehg, James MAdvances in neural information processing systems.2015;27019571
Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies.Rahmani, Elior; Zaitlen, Noah; Baran, Yael; Eng, Celeste; Hu, Donglei; Galanter, Joshua; Oh, Sam; Burchard, Esteban G; Eskin, Eleazar; Zou, James; Halperin, EranNature methods.2016 May;27018579
Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics.Lavallée-Adam, Mathieu; Yates 3rd, John RCurrent protocols in bioinformatics.2016 Mar 24;27010334
Heritability and genetic correlation between the cerebral cortex and associated white matter connections.Shen, Kai-Kai; Doré, Vincent; Rose, Stephen; Fripp, Jurgen; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Thompson, Paul M; Wright, Margaret J; Salvado, OlivierHuman brain mapping.;27006297
Pathway analysis in attention deficit hyperactivity disorder: An ensemble approach.Mooney, Michael A; McWeeney, Shannon K; Faraone, Stephen V; Hinney, Anke; Hebebrand, Johannes; IMAGE2 Consortium; German ADHD GWAS Group; Nigg, Joel T; Wilmot, BethAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.2016 Sep;27004716
Neural basis of reward anticipation and its genetic determinants.Jia, Tianye; Macare, Christine; Desrivières, Sylvane; Gonzalez, Dante A; Tao, Chenyang; Ji, Xiaoxi; Ruggeri, Barbara; Nees, Frauke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Dove, Rachel; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Lemaitre, Hervé; Martinot, Jean-Luc; Paus, Tomá?; Pausova, Zdenka; Poline, Jean-Baptiste; Rietschel, Marcella; Robbins, Trevor; Smolka, Michael N; Müller, Christian P; Feng, Jianfeng; Rothenfluh, Adrian; Flor, Herta; Schumann, Gunter; IMAGEN ConsortiumProceedings of the National Academy of Sciences of the United States of America.2016 Apr 05;27001827
Identifying predictive markers for personalized treatment selection.Shen, Yuanyuan; Cai, TianxiBiometrics.2016 Dec;26999054
A role for the bacterial GATC methylome in antibiotic stress survival.Cohen, Nadia R; Ross, Christian A; Jain, Saloni; Shapiro, Rebecca S; Gutierrez, Arnaud; Belenky, Peter; Li, Hu; Collins, James JNature genetics.2016 05;26998690
A history of breast cancer and older age allow risk stratification of mammographic BI-RADS 3 ratings in the diagnostic setting.Benndorf, Matthias; Wu, Yirong; Burnside, Elizabeth SClinical imaging.2016 Mar-Apr;26995570
Tensor factorization toward precision medicine.Luo, Yuan; Wang, Fei; Szolovits, PeterBriefings in bioinformatics.2017 05 01;26994614
Statistical Inference Models for Image Datasets with Systematic Variations.Kim, Won Hwa; Bendlin, Barbara B; Chung, Moo K; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2015 Jun;26989336
Wikidata as a semantic framework for the Gene Wiki initiative.Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Mitraka, Elvira; Turner, Julia; Putman, Tim; Leong, Justin; Naik, Chinmay; Pavlidis, Paul; Schriml, Lynn; Good, Benjamin M; Su, Andrew IDatabase : the journal of biological databases and curation.2016;26989148
A large dataset of protein dynamics in the mammalian heart proteome.Lau, Edward; Cao, Quan; Ng, Dominic C M; Bleakley, Brian J; Dincer, T Umut; Bot, Brian M; Wang, Ding; Liem, David A; Lam, Maggie P Y; Ge, Junbo; Ping, PeipeiScientific data.2016;26977904
Manifold-valued Dirichlet Processes.Kim, Hyunwoo J; Xu, Jia; Vemuri, Baba C; Singh, VikasProceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning.2015 Jul;26973982
Gaze-enabled Egocentric Video Summarization via Constrained Submodular Maximization.Xut, Jia; Mukherjee, Lopamudra; Li, Yin; Warner, Jamieson; Rehg, James M; Singht, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2015 Jun;26973428
Delving into Egocentric Actions.Li, Yin; Ye, Zhefan; Rehg, James MProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2015 Jun;26973427
The effect of increased genetic risk for Alzheimer's disease on hippocampal and amygdala volume.Lupton, Michelle K; Strike, Lachlan; Hansell, Narelle K; Wen, Wei; Mather, Karen A; Armstrong, Nicola J; Thalamuthu, Anbupalam; McMahon, Katie L; de Zubicaray, Greig I; Assareh, Amelia A; Simmons, Andrew; Proitsi, Petroula; Powell, John F; Montgomery, Grant W; Hibar, Derrek P; Westman, Eric; Tsolaki, Magda; Kloszewska, Iwona; Soininen, Hilkka; Mecocci, Patrizia; Velas, Bruno; Lovestone, Simon; Alzheimer's Disease Neuroimaging Initiative; Brodaty, Henry; Ames, David; Trollor, Julian N; Martin, Nicholas G; Thompson, Paul M; Sachdev, Perminder S; Wright, Margaret JNeurobiology of aging.2016 Apr;26973105
Calponin isoforms CNN1, CNN2 and CNN3: Regulators for actin cytoskeleton functions in smooth muscle and non-muscle cells.Liu, Rong; Jin, J-PGene.2016 Jul 01;26970176
Age, APOE and sex: Triad of risk of Alzheimer's disease.Riedel, Brandalyn C; Thompson, Paul M; Brinton, Roberta DiazThe Journal of steroid biochemistry and molecular biology.2016 Jun;26969397
Electrophysiological Endophenotypes for Schizophrenia.Owens, Emily M; Bachman, Peter; Glahn, David C; Bearden, Carrie EHarvard review of psychiatry.2016 Mar-Apr;26954597
Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution.Gasch, Audrey P; Hose, James; Newton, Michael A; Sardi, Maria; Yong, Mun; Wang, ZhishieLife.2016;26949252
Data publication with the structural biology data grid supports live analysis.Meyer, Peter A; Socias, Stephanie; Key, Jason; Ransey, Elizabeth; Tjon, Emily C; Buschiazzo, Alejandro; Lei, Ming; Botka, Chris; Withrow, James; Neau, David; Rajashankar, Kanagalaghatta; Anderson, Karen S; Baxter, Richard H; Blacklow, Stephen C; Boggon, Titus J; Bonvin, Alexandre M J J; Borek, Dominika; Brett, Tom J; Caflisch, Amedeo; Chang, Chung-I; Chazin, Walter J; Corbett, Kevin D; Cosgrove, Michael S; Crosson, Sean; Dhe-Paganon, Sirano; Di Cera, Enrico; Drennan, Catherine L; Eck, Michael J; Eichman, Brandt F; Fan, Qing R; Ferré-D'Amaré, Adrian R; Fromme, J Christopher; Garcia, K Christopher; Gaudet, Rachelle; Gong, Peng; Harrison, Stephen C; Heldwein, Ekaterina E; Jia, Zongchao; Keenan, Robert J; Kruse, Andrew C; Kvansakul, Marc; McLellan, Jason S; Modis, Yorgo; Nam, Yunsun; Otwinowski, Zbyszek; Pai, Emil F; Pereira, Pedro José Barbosa; Petosa, Carlo; Raman, C S; Rapoport, Tom A; Roll-Mecak, Antonina; Rosen, Michael K; Rudenko, Gabby; Schlessinger, Joseph; Schwartz, Thomas U; Shamoo, Yousif; Sondermann, Holger; Tao, Yizhi J; Tolia, Niraj H; Tsodikov, Oleg V; Westover, Kenneth D; Wu, Hao; Foster, Ian; Fraser, James S; Maia, Filipe R N C; Gonen, Tamir; Kirchhausen, Tom; Diederichs, Kay; Crosas, Mercè; Sliz, PiotrNature communications.2016 Mar 07;26947396
Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models.Sul, Jae Hoon; Bilow, Michael; Yang, Wen-Yun; Kostem, Emrah; Furlotte, Nick; He, Dan; Eskin, EleazarPLoS genetics.2016 Mar;26943367
Health and population effects of rare gene knockouts in adult humans with related parents.Narasimhan, Vagheesh M; Hunt, Karen A; Mason, Dan; Baker, Christopher L; Karczewski, Konrad J; Barnes, Michael R; Barnett, Anthony H; Bates, Chris; Bellary, Srikanth; Bockett, Nicholas A; Giorda, Kristina; Griffiths, Christopher J; Hemingway, Harry; Jia, Zhilong; Kelly, M Ann; Khawaja, Hajrah A; Lek, Monkol; McCarthy, Shane; McEachan, Rosie; O'Donnell-Luria, Anne; Paigen, Kenneth; Parisinos, Constantinos A; Sheridan, Eamonn; Southgate, Laura; Tee, Louise; Thomas, Mark; Xue, Yali; Schnall-Levin, Michael; Petkov, Petko M; Tyler-Smith, Chris; Maher, Eamonn R; Trembath, Richard C; MacArthur, Daniel G; Wright, John; Durbin, Richard; van Heel, David AScience (New York, N.Y.).2016 Apr 22;26940866
Enlarged striatal volume in adults with ADHD carrying the 9-6 haplotype of the dopamine transporter gene DAT1.Onnink, A Marten H; Franke, Barbara; van Hulzen, Kimm; Zwiers, Marcel P; Mostert, Jeanette C; Schene, Aart H; Heslenfeld, Dirk J; Oosterlaan, Jaap; Hoekstra, Pieter J; Hartman, Catharina A; Vasquez, Alejandro Arias; Kan, Cornelis C; Buitelaar, Jan; Hoogman, MartineJournal of neural transmission (Vienna, Austria : 1996).2016 Aug;26935821
Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running.Uchida, Thomas K; Hicks, Jennifer L; Dembia, Christopher L; Delp, Scott LPloS one.2016;26930416
Sharing big biomedical data.Toga, Arthur W; Dinov, Ivo DJournal of big data.2015;26929900
The Implicitome: A Resource for Rationalizing Gene-Disease Associations.Hettne, Kristina M; Thompson, Mark; van Haagen, Herman H H B M; van der Horst, Eelke; Kaliyaperumal, Rajaram; Mina, Eleni; Tatum, Zuotian; Laros, Jeroen F J; van Mulligen, Erik M; Schuemie, Martijn; Aten, Emmelien; Li, Tong Shu; Bruskiewich, Richard; Good, Benjamin M; Su, Andrew I; Kors, Jan A; den Dunnen, Johan; van Ommen, Gert-Jan B; Roos, Marco; 't Hoen, Peter A C; Mons, Barend; Schultes, Erik APloS one.2016;26919047
Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data.Dinov, Ivo DGigaScience.2016;26918190
Guidelines for the functional annotation of microRNAs using the Gene Ontology.Huntley, Rachael P; Sitnikov, Dmitry; Orlic-Milacic, Marija; Balakrishnan, Rama; D'Eustachio, Peter; Gillespie, Marc E; Howe, Doug; Kalea, Anastasia Z; Maegdefessel, Lars; Osumi-Sutherland, David; Petri, Victoria; Smith, Jennifer R; Van Auken, Kimberly; Wood, Valerie; Zampetaki, Anna; Mayr, Manuel; Lovering, Ruth CRNA (New York, N.Y.).2016 May;26917558
Estimation and testing for multiple regulation of multivariate mixed outcomes.Agniel, Denis; Liao, Katherine P; Cai, TianxiBiometrics.2016 Dec;26910481
Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis.Sweeney, Timothy E; Braviak, Lindsay; Tato, Cristina M; Khatri, PurveshThe Lancet. Respiratory medicine.2016 Mar;26907218
Response to Dr Fried & Dr Kievit, and Dr Malhi et al.Schmaal, L; Veltman, D J; van Erp, T G M; Sämann, P G; Frodl, T; Jahanshad, N; Loehrer, E; Vernooij, M W; Niessen, W J; Ikram, M A; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Hoehn, D; Czisch, M; Lagopoulos, J; Hatton, S N; Hickie, I B; Goya-Maldonado, R; Krämer, B; Gruber, O; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Wright, M J; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hall, G B; van Velzen, L S; van Tol, M-J; van der Wee, N J; Veer, I M; Walter, H; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; McIntosh, A M; Whalley, H C; Sussmann, J E; Godlewska, B R; Fischer, F H; Penninx, B W J H; Thompson, P M; Hibar, D PMolecular psychiatry.2016 06;26903270
The Use of Behavior Change Techniques and Theory in Technologies for Cardiovascular Disease Prevention and Treatment in Adults: A Comprehensive Review.Winter, Sandra J; Sheats, Jylana L; King, Abby CProgress in cardiovascular diseases.2016 May-Jun;26902519
Inferring causal molecular networks: empirical assessment through a community-based effort.Hill, Steven M; Heiser, Laura M; Cokelaer, Thomas; Unger, Michael; Nesser, Nicole K; Carlin, Daniel E; Zhang, Yang; Sokolov, Artem; Paull, Evan O; Wong, Chris K; Graim, Kiley; Bivol, Adrian; Wang, Haizhou; Zhu, Fan; Afsari, Bahman; Danilova, Ludmila V; Favorov, Alexander V; Lee, Wai Shing; Taylor, Dane; Hu, Chenyue W; Long, Byron L; Noren, David P; Bisberg, Alexander J; HPN-DREAM Consortium; Mills, Gordon B; Gray, Joe W; Kellen, Michael; Norman, Thea; Friend, Stephen; Qutub, Amina A; Fertig, Elana J; Guan, Yuanfang; Song, Mingzhou; Stuart, Joshua M; Spellman, Paul T; Koeppl, Heinz; Stolovitzky, Gustavo; Saez-Rodriguez, Julio; Mukherjee, SachNature methods.2016 Apr;26901648
DataSpread: Unifying Databases and Spreadsheets.Bendre, Mangesh; Sun, Bofan; Zhang, Ding; Zhou, Xinyan; Chang, Kevin ChenChuan; Parameswaran, AdityaProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;26900487
Barriers and Negative Nudges: Exploring Challenges in Food Journaling.Cordeiro, Felicia; Epstein, Daniel A; Thomaz, Edison; Bales, Elizabeth; Jagannathan, Arvind K; Abowd, Gregory D; Fogarty, JamesProceedings of the SIGCHI conference on human factors in computing systems. CHI Conference.2015 Apr;26894233
Early developmental gene enhancers affect subcortical volumes in the adult human brain.Becker, Martin; Guadalupe, Tulio; Franke, Barbara; Hibar, Derrek P; Renteria, Miguel E; Stein, Jason L; Thompson, Paul M; Francks, Clyde; Vernes, Sonja C; Fisher, Simon EHuman brain mapping.2016 May;26890892
Durable Disease Control with MEK Inhibition in a Patient with NRAS-mutated Atypical Chronic Myeloid Leukemia.Khanna, Vishesh; Pierce, Scott T; Dao, Kim-Hien T; Tognon, Cristina E; Hunt, David E; Junio, Brian; Tyner, Jeffrey W; Druker, Brian JCureus.2015 Dec 17;26870618
ksRepo: a generalized platform for computational drug repositioning.Brown, Adam S; Kong, Sek Won; Kohane, Isaac S; Patel, Chirag JBMC bioinformatics.2016 Feb 09;26860211
Subcortical volumetric abnormalities in bipolar disorder.Hibar, D P; Westlye, L T; van Erp, T G M; Rasmussen, J; Leonardo, C D; Faskowitz, J; Haukvik, U K; Hartberg, C B; Doan, N T; Agartz, I; Dale, A M; Gruber, O; Krämer, B; Trost, S; Liberg, B; Abé, C; Ekman, C J; Ingvar, M; Landén, M; Fears, S C; Freimer, N B; Bearden, C E; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes; Sprooten, E; Glahn, D C; Pearlson, G D; Emsell, L; Kenney, J; Scanlon, C; McDonald, C; Cannon, D M; Almeida, J; Versace, A; Caseras, X; Lawrence, N S; Phillips, M L; Dima, D; Delvecchio, G; Frangou, S; Satterthwaite, T D; Wolf, D; Houenou, J; Henry, C; Malt, U F; Bøen, E; Elvsåshagen, T; Young, A H; Lloyd, A J; Goodwin, G M; Mackay, C E; Bourne, C; Bilderbeck, A; Abramovic, L; Boks, M P; van Haren, N E M; Ophoff, R A; Kahn, R S; Bauer, M; Pfennig, A; Alda, M; Hajek, T; Mwangi, B; Soares, J C; Nickson, T; Dimitrova, R; Sussmann, J E; Hagenaars, S; Whalley, H C; McIntosh, A M; Thompson, P M; Andreassen, O AMolecular psychiatry.2016 Dec;26857596
Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept.Franke, Barbara; Stein, Jason L; Ripke, Stephan; Anttila, Verneri; Hibar, Derrek P; van Hulzen, Kimm J E; Arias-Vasquez, Alejandro; Smoller, Jordan W; Nichols, Thomas E; Neale, Michael C; McIntosh, Andrew M; Lee, Phil; McMahon, Francis J; Meyer-Lindenberg, Andreas; Mattheisen, Manuel; Andreassen, Ole A; Gruber, Oliver; Sachdev, Perminder S; Roiz-Santiañez, Roberto; Saykin, Andrew J; Ehrlich, Stefan; Mather, Karen A; Turner, Jessica A; Schwarz, Emanuel; Thalamuthu, Anbupalam; Shugart, Yin Yao; Ho, Yvonne Yw; Martin, Nicholas G; Wright, Margaret J; Schizophrenia Working Group of the Psychiatric Genomics Consortium; ENIGMA Consortium; O'Donovan, Michael C; Thompson, Paul M; Neale, Benjamin M; Medland, Sarah E; Sullivan, Patrick FNature neuroscience.2016 Mar;26854805
Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations.Luo, Yuan; Uzuner, Özlem; Szolovits, PeterBriefings in bioinformatics.2017 Jan;26851224
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.Putnam, Nicholas H; O'Connell, Brendan L; Stites, Jonathan C; Rice, Brandon J; Blanchette, Marco; Calef, Robert; Troll, Christopher J; Fields, Andrew; Hartley, Paul D; Sugnet, Charles W; Haussler, David; Rokhsar, Daniel S; Green, Richard EGenome research.2016 Mar;26848124
GenAp: a distributed SQL interface for genomic data.Kozanitis, Christos; Patterson, David ABMC bioinformatics.2016 Feb 04;26846841
Surpassing Humans and Computers with JellyBean: Crowd-Vision-Hybrid Counting Algorithms.Sarma, Akash Das; Jain, Ayush; Nandi, Arnab; Parameswaran, Aditya; Widom, JenniferProceedings of the ... AAAI Conference on Human Computation and Crowdsourcing.2015 Nov;26844304
Smart Drill-Down: A New Data Exploration Operator.Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, AdityaProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;26844008
Collaborative Data Analytics with DataHub.Bhardwaj, Anant; Karger, David; Subramanyam, Harihar; Deshpande, Amol; Madden, Sam; Wu, Eugene; Elmore, Aaron; Parameswaran, Aditya; Zhang, RebeccaProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;26844007
Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data.Guo, Wentian; Li, Hui; Zhu, Yitan; Lan, Li; Yang, Shengjie; Drukker, Karen; Morris, Elizabeth; Burnside, Elizabeth; Whitman, Gary; Giger, Maryellen L; Ji, Yuan; Tcga Breast Phenotype Research GroupJournal of medical imaging (Bellingham, Wash.).2015 10;26835491
Developing a utility decision framework to evaluate predictive models in breast cancer risk estimation.Wu, Yirong; Abbey, Craig K; Chen, Xianqiao; Liu, Jie; Page, David C; Alagoz, Oguzhan; Peissig, Peggy; Onitilo, Adedayo A; Burnside, Elizabeth SJournal of medical imaging (Bellingham, Wash.).2015 Oct;26835489
MinION Analysis and Reference Consortium: Phase 1 data release and analysis.Ip, Camilla L C; Loose, Matthew; Tyson, John R; de Cesare, Mariateresa; Brown, Bonnie L; Jain, Miten; Leggett, Richard M; Eccles, David A; Zalunin, Vadim; Urban, John M; Piazza, Paolo; Bowden, Rory J; Paten, Benedict; Mwaigwisya, Solomon; Batty, Elizabeth M; Simpson, Jared T; Snutch, Terrance P; Birney, Ewan; Buck, David; Goodwin, Sara; Jansen, Hans J; O'Grady, Justin; Olsen, Hugh E; MinION Analysis and Reference ConsortiumF1000Research.2015;26834992
CAreDroid: Adaptation Framework for Android Context-Aware Applications.Elmalaki, Salma; Wanner, Lucas; Srivastava, ManiProceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking.2015 Sep;26834512
Quantification of private information leakage from phenotype-genotype data: linking attacks.Harmanci, Arif; Gerstein, MarkNature methods.2016 Mar;26828419
Temporal neutrophil polarization following myocardial infarction.Ma, Yonggang; Yabluchanskiy, Andriy; Iyer, Rugmani Padmanabhan; Cannon, Presley L; Flynn, Elizabeth R; Jung, Mira; Henry, Jeffrey; Cates, Courtney A; Deleon-Pennell, Kristine Y; Lindsey, Merry LCardiovascular research.2016 May 01;26825554
Characterising resting-state functional connectivity in a large sample of adults with ADHD.Mostert, Jeanette C; Shumskaya, Elena; Mennes, Maarten; Onnink, A Marten H; Hoogman, Martine; Kan, Cornelis C; Arias Vasquez, Alejandro; Buitelaar, Jan; Franke, Barbara; Norris, David GProgress in neuro-psychopharmacology & biological psychiatry.2016 Jun 03;26825495
Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma.Ceccarelli, Michele; Barthel, Floris P; Malta, Tathiane M; Sabedot, Thais S; Salama, Sofie R; Murray, Bradley A; Morozova, Olena; Newton, Yulia; Radenbaugh, Amie; Pagnotta, Stefano M; Anjum, Samreen; Wang, Jiguang; Manyam, Ganiraju; Zoppoli, Pietro; Ling, Shiyun; Rao, Arjun A; Grifford, Mia; Cherniack, Andrew D; Zhang, Hailei; Poisson, Laila; Carlotti Jr, Carlos Gilberto; Tirapelli, Daniela Pretti da Cunha; Rao, Arvind; Mikkelsen, Tom; Lau, Ching C; Yung, W K Alfred; Rabadan, Raul; Huse, Jason; Brat, Daniel J; Lehman, Norman L; Barnholtz-Sloan, Jill S; Zheng, Siyuan; Hess, Kenneth; Rao, Ganesh; Meyerson, Matthew; Beroukhim, Rameen; Cooper, Lee; Akbani, Rehan; Wrensch, Margaret; Haussler, David; Aldape, Kenneth D; Laird, Peter W; Gutmann, David H; TCGA Research Network; Noushmehr, Houtan; Iavarone, Antonio; Verhaak, Roel G WCell.2016 Jan 28;26824661
Genetic imaging consortium for addiction medicine: From neuroimaging to genes.Mackey, Scott; Kan, Kees-Jan; Chaarani, Bader; Alia-Klein, Nelly; Batalla, Albert; Brooks, Samantha; Cousijn, Janna; Dagher, Alain; de Ruiter, Michiel; Desrivieres, Sylvane; Feldstein Ewing, Sarah W; Goldstein, Rita Z; Goudriaan, Anna E; Heitzeg, Mary M; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Morales, Angelica M; Paulus, Martin P; Paus, Tomas; Pearlson, Godfrey; Schluter, Renée; Momenan, Reza; Schmaal, Lianne; Schumann, Gunter; Sinha, Rajita; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot A; Solowij, Nadia; Tapert, Susan; Uhlmann, Anne; Veltman, Dick; van Holst, Ruth; Walter, Henrik; Wright, Margaret J; Yucel, Murat; Yurgelun-Todd, Deborah; Hibar, Derrek P; Jahanshad, Neda; Thompson, Paul M; Glahn, David C; Garavan, Hugh; Conrod, PatriciaProgress in brain research.2016;26822360
REEF: Retainable Evaluator Execution Framework.Weimer, Markus; Chen, Yingda; Chun, Byung-Gon; Condie, Tyson; Curino, Carlo; Douglas, Chris; Lee, Yunseong; Majestro, Tony; Malkhi, Dahlia; Matusevych, Sergiy; Myers, Brandon; Narayanamurthy, Shravan; Ramakrishnan, Raghu; Rao, Sriram; Sears, Russell; Sezgin, Beysim; Wang, JuliaProceedings. ACM-Sigmod International Conference on Management of Data.2015 May-Jun;26819493
Leveraging Genomic Annotations and Pleiotropic Enrichment for Improved Replication Rates in Schizophrenia GWAS.Wang, Yunpeng; Thompson, Wesley K; Schork, Andrew J; Holland, Dominic; Chen, Chi-Hua; Bettella, Francesco; Desikan, Rahul S; Li, Wen; Witoelar, Aree; Zuber, Verena; Devor, Anna; Bipolar Disorder and Schizophrenia Working Group of the Psychiatric Genomics Consortium; Enhancing Neuro Imaging Genetics through Meta Analysis Consortium; Nöthen, Markus M; Rietschel, Marcella; Chen, Qiang; Werge, Thomas; Cichon, Sven; Weinberger, Daniel R; Djurovic, Srdjan; O'Donovan, Michael; Visscher, Peter M; Andreassen, Ole A; Dale, Anders MPLoS genetics.2016 Jan;26808560
Randomised trials for the Fitbit generation.Dempsey, Walter; Liao, Peng; Klasnja, Pedja; Nahum-Shani, Inbal; Murphy, Susan ASignificance (Oxford, England).2015 Dec 1;26807137
The GAAIN Entity Mapper: An Active-Learning System for Medical Data Mapping.Ashish, Naveen; Dewan, Peehoo; Toga, Arthur WFrontiers in neuroinformatics.2015;26793094
Quantifying prion disease penetrance using large population control cohorts.Minikel, Eric Vallabh; Vallabh, Sonia M; Lek, Monkol; Estrada, Karol; Samocha, Kaitlin E; Sathirapongsasuti, J Fah; McLean, Cory Y; Tung, Joyce Y; Yu, Linda P C; Gambetti, Pierluigi; Blevins, Janis; Zhang, Shulin; Cohen, Yvonne; Chen, Wei; Yamada, Masahito; Hamaguchi, Tsuyoshi; Sanjo, Nobuo; Mizusawa, Hidehiro; Nakamura, Yosikazu; Kitamoto, Tetsuyuki; Collins, Steven J; Boyd, Alison; Will, Robert G; Knight, Richard; Ponto, Claudia; Zerr, Inga; Kraus, Theo F J; Eigenbrod, Sabina; Giese, Armin; Calero, Miguel; de Pedro-Cuesta, Jesús; Haïk, Stéphane; Laplanche, Jean-Louis; Bouaziz-Amar, Elodie; Brandel, Jean-Philippe; Capellari, Sabina; Parchi, Piero; Poleggi, Anna; Ladogana, Anna; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Marshall, Jamie L; Boehnke, Michael; Laakso, Markku; Mohlke, Karen L; Kähler, Anna; Chambert, Kimberly; McCarroll, Steven; Sullivan, Patrick F; Hultman, Christina M; Purcell, Shaun M; Sklar, Pamela; van der Lee, Sven J; Rozemuller, Annemieke; Jansen, Casper; Hofman, Albert; Kraaij, Robert; van Rooij, Jeroen G J; Ikram, M Arfan; Uitterlinden, André G; van Duijn, Cornelia M; Exome Aggregation Consortium (ExAC); Daly, Mark J; MacArthur, Daniel GScience translational medicine.2016 Jan 20;26791950
Abnormal asymmetries in subcortical brain volume in schizophrenia.Okada, N; Fukunaga, M; Yamashita, F; Koshiyama, D; Yamamori, H; Ohi, K; Yasuda, Y; Fujimoto, M; Watanabe, Y; Yahata, N; Nemoto, K; Hibar, D P; van Erp, T G M; Fujino, H; Isobe, M; Isomura, S; Natsubori, T; Narita, H; Hashimoto, N; Miyata, J; Koike, S; Takahashi, T; Yamasue, H; Matsuo, K; Onitsuka, T; Iidaka, T; Kawasaki, Y; Yoshimura, R; Watanabe, Y; Suzuki, M; Turner, J A; Takeda, M; Thompson, P M; Ozaki, N; Kasai, K; Hashimoto, RMolecular psychiatry.2016 10;26782053
Rapid Sampling for Visualizations with Ordering Guarantees.Kim, Albert; Blais, Eric; Parameswaran, Aditya; Indyk, Piotr; Madden, Sam; Rubinfeld, RonittProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Jan;26779380
SeeDB: Efficient Data-Driven Visualization Recommendations to Support Visual Analytics.Vartak, Manasi; Rahman, Sajjadur; Madden, Samuel; Parameswaran, Aditya; Polyzotis, NeoklisProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Sep;26779379
REPRODUCIBLE AND SHAREABLE QUANTIFICATIONS OF PATHOGENICITY.Manrai, Arjun K; Wang, Brice L; Patel, Chirag J; Kohane, Isaac SPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2016;26776189
TNNT1, TNNT2, and TNNT3: Isoform genes, regulation, and structure-function relationships.Wei, Bin; Jin, J-PGene.2016 May 10;26774798
May the fibrosis be with you: Is discoidin domain receptor 2 the receptor we have been looking for?DeLeon-Pennell, Kristine YJournal of molecular and cellular cardiology.2016 Feb;26772530
Heritability and reliability of automatically segmented human hippocampal formation subregions.Whelan, Christopher D; Hibar, Derrek P; van Velzen, Laura S; Zannas, Anthony S; Carrillo-Roa, Tania; McMahon, Katie; Prasad, Gautam; Kelly, Sinéad; Faskowitz, Joshua; deZubiracay, Greig; Iglesias, Juan E; van Erp, Theo G M; Frodl, Thomas; Martin, Nicholas G; Wright, Margaret J; Jahanshad, Neda; Schmaal, Lianne; Sämann, Philipp G; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2016 Mar;26747746
Head Motion and Inattention/Hyperactivity Share Common Genetic Influences: Implications for fMRI Studies of ADHD.Couvy-Duchesne, Baptiste; Ebejer, Jane L; Gillespie, Nathan A; Duffy, David L; Hickie, Ian B; Thompson, Paul M; Martin, Nicholas G; de Zubicaray, Greig I; McMahon, Katie L; Medland, Sarah E; Wright, Margaret JPloS one.2016;26745144
OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data.Leng, Ning; Choi, Jeea; Chu, Li-Fang; Thomson, James A; Kendziorski, Christina; Stewart, RonBioinformatics (Oxford, England).2016 May 01;26743507
The Budding Yeast Ubiquitin Protease Ubp7 Is a Novel Component Involved in S Phase Progression.Böhm, Stefanie; Szakal, Barnabas; Herken, Benjamin W; Sullivan, Meghan R; Mihalevic, Michael J; Kabbinavar, Faiz F; Branzei, Dana; Clark, Nathan L; Bernstein, Kara AThe Journal of biological chemistry.2016 Feb 26;26740628
UCSC Data Integrator and Variant Annotation Integrator.Hinrichs, Angie S; Raney, Brian J; Speir, Matthew L; Rhead, Brooke; Casper, Jonathan; Karolchik, Donna; Kuhn, Robert M; Rosenbloom, Kate R; Zweig, Ann S; Haussler, David; Kent, W JamesBioinformatics (Oxford, England).2016 May 01;26740527
The crossroads of inflammation, fibrosis, and arrhythmia following myocardial infarction.Francis Stuart, Samantha D; De Jesus, Nicole M; Lindsey, Merry L; Ripplinger, Crystal MJournal of molecular and cellular cardiology.2016 Feb;26739214
LRP5: A novel anti-inflammatory macrophage marker that positively regulates migration and phagocytosis.Ma, YonggangJournal of molecular and cellular cardiology.2016 Feb;26739212
Conditional Random Fields for Morphological Analysis of Wireless ECG Signals.Natarajan, Annamalai; Gaiser, Edward; Angarita, Gustavo; Malison, Robert; Ganesan, Deepak; Marlin, BenjaminACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine.2014;26726321
Titian: Data Provenance Support in Spark.Interlandi, Matteo; Shah, Kshitij; Tetali, Sai Deep; Gulzar, Muhammad Ali; Yoo, Seunghyun; Kim, Miryung; Millstein, Todd; Condie, TysonProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Nov;26726305
Matrix metalloproteinases as input and output signals for post-myocardial infarction remodeling.Lindsey, Merry L; Iyer, Rugmani Padmanabhan; Jung, Mira; DeLeon-Pennell, Kristine Y; Ma, YonggangJournal of molecular and cellular cardiology.2016 Feb;26721597
Comment: Getting a handle on HAND in the era of cART.Cohen, Ronald A; Navia, BradfordNeurology.2016 Jan 26;26718565
Debiasing Crowdsourced Batches.Zhuang, Honglei; Parameswaran, Aditya; Roth, Dan; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26713175
Fast Inbound Top-K Query for Random Walk with Restart.Zhang, Chao; Jiang, Shan; Chen, Yucheng; Sun, Yidan; Han, JiaweiMachine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference).2015 Sep;26709392
TOPTRAC: Topical Trajectory Pattern Mining.Kim, Younghoon; Han, Jiawei; Yuan, CangzhouKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26709365
Sample size calculations for micro-randomized trials in mHealth.Liao, Peng; Klasnja, Predrag; Tewari, Ambuj; Murphy, Susan AStatistics in medicine.2016 05 30;26707831
Robust Classification of Information Networks by Consistent Graph Learning.Zhi, Shi; Han, Jiawei; Gu, QuanquanMachine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference).2015 Sep;26705541
Leveraging Pattern Semantics for Extracting Entities in Enterprises.Tao, Fangbo; Zhao, Bo; Fuxman, Ariel; Li, Yang; Han, JiaweiProceedings of the ... International World-Wide Web Conference. International WWW Conference.2015 May;26705540
Graph Regularized Meta-path Based Transductive Regression in Heterogeneous Information Network.Wan, Mengting; Ouyang, Yunbo; Kaplan, Lance; Han, JiaweiProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2015 Apr-May;26705510
Automatic Entity Recognition and Typing from Massive Text Corpora: A Phrase and Network Mining Approach.Ren, Xiang; El-Kishky, Ahmed; Wang, Chi; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26705508
Modeling Truth Existence in Truth Discovery.Zhi, Shi; Zhao, Bo; Tong, Wenzhu; Gao, Jing; Yu, Dian; Ji, Heng; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26705507
Assembler: Efficient Discovery of Spatial Co-evolving Patterns in Massive Geo-sensory Data.Zhang, Chao; Zheng, Yu; Ma, Xiuli; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26705506
Towards Interactive Construction of Topical Hierarchy: A Recursive Tensor Decomposition Approach.Wang, Chi; Liu, Xueqing; Song, Yanglei; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26705505
Incorporating World Knowledge to Document Clustering via Heterogeneous Information Networks.Wang, Chenguang; Song, Yangqiu; El-Kishky, Ahmed; Roth, Dan; Zhang, Ming; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26705504
ClusType: Effective Entity Recognition and Typing by Relation Phrase-Based Clustering.Ren, Xiang; El-Kishky, Ahmed; Wang, Chi; Tao, Fangbo; Voss, Clare R; Ji, Heng; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26705503
On the Discovery of Evolving Truth.Li, Yaliang; Li, Qi; Gao, Jing; Su, Lu; Zhao, Bo; Fan, Wei; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26705502
Mining Quality Phrases from Massive Text Corpora.Liu, Jialu; Shang, Jingbo; Wang, Chi; Ren, Xiang; Han, JiaweiProceedings. ACM-Sigmod International Conference on Management of Data.2015 May-Jun;26705375
The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine.Hesselager, Marianne O; Codrea, Marius C; Sun, Zhi; Deutsch, Eric W; Bennike, Tue B; Stensballe, Allan; Bundgaard, Louise; Moritz, Robert L; Bendixen, EmøkeProteomics.2016 Feb;26699206
A predictive enrichment procedure to identify potential responders to a new therapy for randomized, comparative controlled clinical studies.Li, Junlong; Zhao, Lihui; Tian, Lu; Cai, Tianxi; Claggett, Brian; Callegaro, Andrea; Dizier, Benjamin; Spiessens, Bart; Ulloa-Montoya, Fernando; Wei, Lee-JenBiometrics.2016 Sep;26689167
RisQ: Recognizing Smoking Gestures with Inertial Sensors on a Wristband.Parate, Abhinav; Chiu, Meng-Chieh; Chadowitz, Chaniel; Ganesan, Deepak; Kalogerakis, EvangelosMobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services.2014 Jun;26688835
Protein kinase A catalytic subunit isoform PRKACA; History, function and physiology.Turnham, Rigney E; Scott, John DGene.2016 Feb 15;26687711
Multi-Shell Hybrid Diffusion Imaging (HYDI) at 7 Tesla in TgF344-AD Transgenic Alzheimer Rats.Daianu, Madelaine; Jacobs, Russell E; Weitz, Tara M; Town, Terrence C; Thompson, Paul MPloS one.2015;26683657
Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses.Andres-Terre, Marta; McGuire, Helen M; Pouliot, Yannick; Bongen, Erika; Sweeney, Timothy E; Tato, Cristina M; Khatri, PurveshImmunity.2015 Dec 15;26682989
Voxel-based morphometry analysis reveals frontal brain differences in participants with ADHD and their unaffected siblings.Bralten, Janita; Greven, Corina U; Franke, Barbara; Mennes, Maarten; Zwiers, Marcel P; Rommelse, Nanda N J; Hartman, Catharina; van der Meer, Dennis; O'Dwyer, Laurence; Oosterlaan, Jaap; Hoekstra, Pieter J; Heslenfeld, Dirk; Arias-Vasquez, Alejandro; Buitelaar, Jan KJournal of psychiatry & neuroscience : JPN.2016 Jun;26679925
Disrupted rich club network in behavioral variant frontotemporal dementia and early-onset Alzheimer's disease.Daianu, Madelaine; Mezher, Adam; Mendez, Mario F; Jahanshad, Neda; Jimenez, Elvira E; Thompson, Paul MHuman brain mapping.2016 Mar;26678225
Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves.Buffon, Giseli; Blasi, Édina A R; Adamski, Janete M; Ferla, Noeli J; Berger, Markus; Santi, Lucélia; Lavallée-Adam, Mathieu; Yates 3rd, John R; Beys-da-Silva, Walter O; Sperotto, Raul AJournal of proteome research.2016 Feb 05;26667653
ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide.Thompson, Paul M; Andreassen, Ole A; Arias-Vasquez, Alejandro; Bearden, Carrie E; Boedhoe, Premika S; Brouwer, Rachel M; Buckner, Randy L; Buitelaar, Jan K; Bulayeva, Kazima B; Cannon, Dara M; Cohen, Ronald A; Conrod, Patricia J; Dale, Anders M; Deary, Ian J; Dennis, Emily L; de Reus, Marcel A; Desrivieres, Sylvane; Dima, Danai; Donohoe, Gary; Fisher, Simon E; Fouche, Jean-Paul; Francks, Clyde; Frangou, Sophia; Franke, Barbara; Ganjgahi, Habib; Garavan, Hugh; Glahn, David C; Grabe, Hans J; Guadalupe, Tulio; Gutman, Boris A; Hashimoto, Ryota; Hibar, Derrek P; Holland, Dominic; Hoogman, Martine; Pol, Hilleke E Hulshoff; Hosten, Norbert; Jahanshad, Neda; Kelly, Sinead; Kochunov, Peter; Kremen, William S; Lee, Phil H; Mackey, Scott; Martin, Nicholas G; Mazoyer, Bernard; McDonald, Colm; Medland, Sarah E; Morey, Rajendra A; Nichols, Thomas E; Paus, Tomas; Pausova, Zdenka; Schmaal, Lianne; Schumann, Gunter; Shen, Li; Sisodiya, Sanjay M; Smit, Dirk J A; Smoller, Jordan W; Stein, Dan J; Stein, Jason L; Toro, Roberto; Turner, Jessica A; van den Heuvel, Martijn P; van den Heuvel, Odile L; van Erp, Theo G M; van Rooij, Daan; Veltman, Dick J; Walter, Henrik; Wang, Yalin; Wardlaw, Joanna M; Whelan, Christopher D; Wright, Margaret J; Ye, Jieping; ENIGMA ConsortiumNeuroImage.;26658930
The Reactome pathway Knowledgebase.Fabregat, Antonio; Sidiropoulos, Konstantinos; Garapati, Phani; Gillespie, Marc; Hausmann, Kerstin; Haw, Robin; Jassal, Bijay; Jupe, Steven; Korninger, Florian; McKay, Sheldon; Matthews, Lisa; May, Bruce; Milacic, Marija; Rothfels, Karen; Shamovsky, Veronica; Webber, Marissa; Weiser, Joel; Williams, Mark; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, PeterNucleic acids research.2016 Jan 4;26656494
Microrandomized trials: An experimental design for developing just-in-time adaptive interventions.Klasnja, Predrag; Hekler, Eric B; Shiffman, Saul; Boruvka, Audrey; Almirall, Daniel; Tewari, Ambuj; Murphy, Susan AHealth psychology : official journal of the Division of Health Psychology, American Psychological Association.2015 Dec;26651463
Building health behavior models to guide the development of just-in-time adaptive interventions: A pragmatic framework.Nahum-Shani, Inbal; Hekler, Eric B; Spruijt-Metz, DonnaHealth psychology : official journal of the Division of Health Psychology, American Psychological Association.2015 Dec;26651462
Cerebral Amyloid and Hypertension are Independently Associated with White Matter Lesions in Elderly.Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; Alzheimer?s Disease Neuroimaging InitiativeFrontiers in aging neuroscience.2015;26648866
Characterizing Smoking and Drinking Abstinence from Social Media.Tamersoy, Acar; De Choudhury, Munmun; Chau, Duen HorngHT ... : the proceedings of the ... ACM Conference on Hypertext and Social Media. ACM Conference on Hypertext and Social Media.2015 Sep;26640831
Algebraic connectivity of brain networks shows patterns of segregation leading to reduced network robustness in Alzheimer's disease.Daianu, Madelaine; Jahanshad, Neda; Nir, Talia M; Leonardo, Cassandra D; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matthew A; Thompson, Paul MComputational diffusion MRI : MICCAI Workshop, Boston, MA, USA, September 2014. CDMRI (Workshop) (6th : 2014 : Boston, Mass.).2014;26640830
Mapping abnormal subcortical brain morphometry in an elderly HIV+ cohort.Wade, Benjamin S C; Valcour, Victor G; Wendelken-Riegelhaupt, Lauren; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Gutman, Boris A; Thompson, Paul MNeuroImage. Clinical.2015;26640768
Saul: Towards Declarative Learning Based Programming.Kordjamshidi, Parisa; Roth, Dan; Wu, HaoIJCAI : proceedings of the conference.2015 Jul;26635465
Using computer-extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage.Burnside, Elizabeth S; Drukker, Karen; Li, Hui; Bonaccio, Ermelinda; Zuley, Margarita; Ganott, Marie; Net, Jose M; Sutton, Elizabeth J; Brandt, Kathleen R; Whitman, Gary J; Conzen, Suzanne D; Lan, Li; Ji, Yuan; Zhu, Yitan; Jaffe, Carl C; Huang, Erich P; Freymann, John B; Kirby, Justin S; Morris, Elizabeth A; Giger, Maryellen LCancer.2016 Mar 01;26619259
Binary Classifier Calibration Using a Bayesian Non-Parametric Approach.Naeini, Mahdi Pakdaman; Cooper, Gregory F; Hauskrecht, MilosProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2015;26613068
Genome-wide alterations in hippocampal 5-hydroxymethylcytosine links plasticity genes to acute stress.Li, Sisi; Papale, Ligia A; Zhang, Qi; Madrid, Andy; Chen, Li; Chopra, Pankaj; Kele?, Sündüz; Jin, Peng; Alisch, Reid SNeurobiology of disease.2016 Feb;26598390
The UCSC Genome Browser database: 2016 update.Speir, Matthew L; Zweig, Ann S; Rosenbloom, Kate R; Raney, Brian J; Paten, Benedict; Nejad, Parisa; Lee, Brian T; Learned, Katrina; Karolchik, Donna; Hinrichs, Angie S; Heitner, Steve; Harte, Rachel A; Haeussler, Maximilian; Guruvadoo, Luvina; Fujita, Pauline A; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P; Haussler, David; Kuhn, Robert M; Kent, W JamesNucleic acids research.2016 Jan 4;26590259
Cracking the brain's genetic code.Thompson, Paul MProceedings of the National Academy of Sciences of the United States of America.2015 Dec 15;26582794
Childhood abuse and deprivation are associated with distinct sex-dependent differences in brain morphology.Everaerd, Daphne; Klumpers, Floris; Zwiers, Marcel; Guadalupe, Tulio; Franke, Barbara; van Oostrom, Iris; Schene, Aart; Fernández, Guillén; Tendolkar, IndiraNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.2016 Jun;26576924
Sharing the wealth: Neuroimaging data repositories.Eickhoff, Simon; Nichols, Thomas E; Van Horn, John D; Turner, Jessica ANeuroImage.2016 Jan 1;1065-826574120
Entorhinal Cortex Thickness across the Human Lifespan.Hasan, Khader M; Mwangi, Benson; Cao, Bo; Keser, Zafer; Tustison, Nicholas J; Kochunov, Peter; Frye, Richard E; Savatic, Mirjana; Soares, JairJournal of neuroimaging : official journal of the American Society of Neuroimaging.2016 May;26565394
Center of excellence for mobile sensor data-to-knowledge (MD2K).Kumar, Santosh; Abowd, Gregory D; Abraham, William T; al'Absi, Mustafa; Beck, J Gayle; Chau, Duen Horng; Condie, Tyson; Conroy, David E; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Lam, Cho; Marlin, Benjamin; Marsh, Clay B; Murphy, Susan A; Nahum-Shani, Inbal; Patrick, Kevin; Rehg, James M; Sharmin, Moushumi; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, David WJournal of the American Medical Informatics Association : JAMIA.2015 Nov;26555017
Jagged1 (JAG1): Structure, expression, and disease associations.Grochowski, Christopher M; Loomes, Kathleen M; Spinner, Nancy BGene.2016 Jan 15;26548814
MRI-based brain atrophy rates in ADNI phase 2: acceleration and enrichment considerations for clinical trials.Hua, Xue; Ching, Christopher R K; Mezher, Adam; Gutman, Boris A; Hibar, Derrek P; Bhatt, Priya; Leow, Alex D; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeNeurobiology of aging.2016 Jan;26545631
puffMarker: A Multi-Sensor Approach for Pinpointing the Timing of First Lapse in Smoking Cessation.Saleheen, Nazir; Ali, Amin Ahsan; Hossain, Syed Monowar; Sarker, Hillol; Chatterjee, Soujanya; Marlin, Benjamin; Ertin, Emre; al'Absi, Mustafa; Kumar, SantoshProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2015 Sep;26543927
Stress: Towards a Gold Standard for Continuous Stress Assessment in the Mobile Environment.Hovsepian, Karen; al'Absi, Mustafa; Ertin, Emre; Kamarck, Thomas; Nakajima, Motohiro; Kumar, SantoshProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2015 Sep;26543926
Automated-immunosensor with centrifugal fluid valves for salivary cortisol measurement.Yamaguchi, Masaki; Katagata, Hiroki; Tezuka, Yuki; Niwa, Daisuke; Shetty, VivekSensing and Bio-Sensing Research.2014 Aug;26543818
Visualization of Time-Series Sensor Data to Inform the Design of Just-In-Time Adaptive Stress Interventions.Sharmin, Moushumi; Raij, Andrew; Epstien, David; Nahum-Shani, Inbal; Beck, J Gayle; Vhaduri, Sudip; Preston, Kenzie; Kumar, SantoshProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2015 Sep;26539566
iShadow: Design of a Wearable, Real-Time Mobile Gaze Tracker.Mayberry, Addison; Hu, Pan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, DeepakMobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services.2014 Jun;26539565
Heritability of complex white matter diffusion traits assessed in a population isolate.Kochunov, Peter; Fu, Mao; Nugent, Katie; Wright, Susan N; Du, Xiaoming; Muellerklein, Florian; Morrissey, Mary; Eskandar, George; Shukla, Dinesh K; Jahanshad, Neda; Thompson, Paul M; Patel, Binish; Postolache, Teodor T; Strauss, Kevin A; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L ElliotHuman brain mapping.2016 Feb;26538488
TNNI1, TNNI2 and TNNI3: Evolution, regulation, and protein structure-function relationships.Sheng, Juan-Juan; Jin, Jian-PingGene.2016 Jan 15;26526134
Global Data Sharing in Alzheimer Disease Research.Ashish, Naveen; Bhatt, Priya; Toga, Arthur WAlzheimer disease and associated disorders.2016 Apr-Jun;26523713
An advanced white matter tract analysis in frontotemporal dementia and early-onset Alzheimer's disease.Daianu, Madelaine; Mendez, Mario F; Baboyan, Vatche G; Jin, Yan; Melrose, Rebecca J; Jimenez, Elvira E; Thompson, Paul MBrain imaging and behavior.2016 Dec;26515192
Comparing Mammography Abnormality Features to Genetic Variants in the Prediction of Breast Cancer in Women Recommended for Breast Biopsy.Burnside, Elizabeth S; Liu, Jie; Wu, Yirong; Onitilo, Adedayo A; McCarty, Catherine A; Page, C David; Peissig, Peggy L; Trentham-Dietz, Amy; Kitchner, Terrie; Fan, Jun; Yuan, MingAcademic radiology.2016 Jan;26514439
Transcriptomic and genetic studies identify NFAT5 as a candidate gene for cocaine dependence.Fernàndez-Castillo, N; Cabana-Domínguez, J; Soriano, J; Sànchez-Mora, C; Roncero, C; Grau-López, L; Ros-Cucurull, E; Daigre, C; van Donkelaar, M M J; Franke, B; Casas, M; Ribasés, M; Cormand, BTranslational psychiatry.2015;26506053
Computational discovery of transcription factors associated with drug response.Hanson, C; Cairns, J; Wang, L; Sinha, SThe pharmacogenomics journal.2016 Nov;26503816
The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects.Kochunov, Peter; Thompson, Paul M; Winkler, Anderson; Morrissey, Mary; Fu, Mao; Coyle, Thomas R; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Gaudiot, Christopher; Sampath, Hemalatha; Eskandar, George; Jahanshad, Neda; Patel, Binish; Rowland, Laura; Nichols, Thomas E; O'Connell, Jeffrey R; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L ElliotNeuroImage.2016 Jan 15;26499807
A comprehensive Candida albicans PeptideAtlas build enables deep proteome coverage.Vialas, Vital; Sun, Zhi; Reales-Calderón, Jose A; Hernáez, María L; Casas, Vanessa; Carrascal, Montserrat; Abián, Joaquín; Monteoliva, Lucía; Deutsch, Eric W; Moritz, Robert L; Gil, ConchaJournal of proteomics.2016 Jan 10;26493587
Neurocognitive Deficits in Attention-Deficit/Hyperactivity Disorder With and Without Comorbid Oppositional Defiant Disorder.Noordermeer, Siri D S; Luman, Marjolein; Buitelaar, Jan K; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Faraone, Stephen V; Heslenfeld, Dirk J; Oosterlaan, JaapJournal of attention disorders.2015 Oct 20;26486602
Age exacerbates HIV-associated white matter abnormalities.Seider, Talia R; Gongvatana, Assawin; Woods, Adam J; Chen, Huaihou; Porges, Eric C; Cummings, Tiffany; Correia, Stephen; Tashima, Karen; Cohen, Ronald AJournal of neurovirology.2016 Apr;26446690
Risk of Type 2 Diabetes Is Lower in US Adults Taking Chromium-Containing Supplements.McIver, David J; Grizales, Ana Maria; Brownstein, John S; Goldfine, Allison BThe Journal of nutrition.2015 Dec;26446484
Structural Neuroimaging Genetics Interactions in Alzheimer's Disease.Moon, Seok Woo; Dinov, Ivo D; Kim, Jaebum; Zamanyan, Alen; Hobel, Sam; Thompson, Paul M; Toga, Arthur WJournal of Alzheimer's disease : JAD.2015;26444770
Optimal mass transport for shape matching and comparison.Su, Zhengyu; Wang, Yalin; Shi, Rui; Zeng, Wei; Sun, Jian; Luo, Feng; Gu, XianfengIEEE transactions on pattern analysis and machine intelligence.2015 Nov;26440265
Endothelial nitric oxide synthase: From biochemistry and gene structure to clinical implications of NOS3 polymorphisms.Oliveira-Paula, Gustavo H; Lacchini, Riccardo; Tanus-Santos, Jose EGene.2016 Jan 10;26428312
Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism.Papale, Ligia A; Zhang, Qi; Li, Sisi; Chen, Kailei; Kele?, Sündüz; Alisch, Reid SHuman molecular genetics.2015 Dec 15;26423458
Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis.Hu, Dong; Gur, Mert; Zhou, Zhuan; Gamper, Armin; Hung, Mien-Chie; Fujita, Naoya; Lan, Li; Bahar, Ivet; Wan, YongNature communications.2015;26420673
Medial Demons Registration Localizes The Degree of Genetic Influence Over Subcortical Shape Variability: An N= 1480 Meta-Analysis.Gutman, Boris A; Jahanshad, Neda; Ching, Christopher R K; Wang, Yalin; Kochunov, Peter V; Nichols, Thomas E; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413211
GENETIC ANALYSIS OF STRUCTURAL BRAIN CONNECTIVITY USING DICCCOL MODELS OF DIFFUSION MRI IN 522 TWINS.Zhu, Dajiang; Zhan, Liang; Faskowitz, Joshua; Daianu, Madelaine; Jahanshad, Neda; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413210
Detecting Genetic Risk Factors for Alzheimer's Disease in Whole Genome Sequence Data via Lasso Screening.Yang, Tao; Wang, Jie; Sun, Qian; Hibar, Derrek P; Jahanshad, Neda; Liu, Li; Wang, Yalin; Zhan, Liang; Thompson, Paul M; Ye, JiepingProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413209
Information-Theoretic Characterization of Blood Panel Predictors for Brain Atrophy and Cognitive Decline in the Elderly.Madsen, Sarah K; Ver Steeg, Greg; Mezher, Adam; Jahanshad, Neda; Nir, Talia M; Hua, Xue; Gutman, Boris A; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative (ADNI)Proceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413208
MAPPING ABNORMAL SUBCORTICAL BRAIN MORPHOMETRY IN AN ELDERLY HIV+ COHORT.Wade, Benjamin S C; Valcour, Victor G; Wendelken-Riegelhaupt, Lauren; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Wang, Yalin; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413207
WHITE MATTER INTEGRITY IN TRAUMATIC BRAIN INJURY: EFFECTS OF PERMISSIBLE FIBER TURNING ANGLE.Dennis, Emily L; Jin, Yan; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413206
SPECTRAL GRAPH THEORY AND GRAPH ENERGY METRICS SHOW EVIDENCE FOR THE ALZHEIMER'S DISEASE DISCONNECTION SYNDROME IN APOE-4 RISK GENE CARRIERS.Daianu, Madelaine; Mezher, Adam; Jahanshad, Neda; Hibar, Derrek P; Nir, Talia M; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413205
HERITABILITY OF BRAIN NETWORK TOPOLOGY IN 853 TWINS AND SIBLINGS.Zhan, L; Jahanshad, N; Faskowitz, J; Zhu, D; Prasad, G; Martin, N G; de Zubicaray, G I; McMahon, K L; Wright, M J; Thompson, P MProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413204
AUTOMATED MULTI-ATLAS LABELING OF THE FORNIX AND ITS INTEGRITY IN ALZHEIMER'S DISEASE.Jin, Yan; Shi, Yonggang; Zhan, Liang; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative (ADNI)Proceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413203
Boosting Classification Accuracy of Diffusion MRI Derived Brain Networks for the Subtypes of Mild Cognitive Impairment Using Higher Order Singular Value Decomposition.Zhan, L; Liu, Y; Zhou, J; Ye, J; Thompson, P MProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413202
FEATURE SELECTION IMPROVES THE ACCURACY OF CLASSIFYING ALZHEIMER DISEASE USING DIFFUSION TENSOR IMAGES.Demirhan, Ay?e; Nir, Talia M; Zavaliangos-Petropulu, Artemis; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M; Jahanshad, Neda; Alzheimer?s Disease Neuroimaging Initiative (ADNI)Proceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413201
Random Forest Classification of Depression Status Based On Subcortical Brain Morphometry Following Electroconvulsive Therapy.Wade, Benjamin S C; Joshi, Shantanu H; Pirnia, Tara; Leaver, Amber M; Woods, Roger P; Thompson, Paul M; Espinoza, Randall; Narr, Katherine LProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;26413200
KCNE1 and KCNE3: The yin and yang of voltage-gated K(+) channel regulation.Abbott, Geoffrey WGene.2016 Jan 15;26410412
Tensor-Based Morphometry Reveals Volumetric Deficits in Moderate=Severe Pediatric Traumatic Brain Injury.Dennis, Emily L; Hua, Xue; Villalon-Reina, Julio; Moran, Lisa M; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FJournal of neurotrauma.2016 05 01;26393494
p38 MAP kinases in the heart.Yokota, Tomohiro; Wang, YibinGene.2016 Jan 10;26390817
Structure and functional roles of Epac2 (Rapgef4).Sugawara, Kenji; Shibasaki, Tadao; Takahashi, Harumi; Seino, SusumuGene.2016 Jan 10;26390815
Genes influence the amplitude and timing of brain hemodynamic responses.Shan, Zuyao Y; Vinkhuyzen, Anna A E; Thompson, Paul M; McMahon, Katie L; Blokland, Gabriëlla A M; de Zubicaray, Greig I; Calhoun, Vince; Martin, Nicholas G; Visscher, Peter M; Wright, Margaret J; Reutens, David CNeuroImage.2016 Jan 01;26375212
Similar Subgroups Based on Cognitive Performance Parse Heterogeneity in Adults With ADHD and Healthy Controls.Mostert, Jeanette C; Hoogman, Martine; Onnink, A Marten H; van Rooij, Daan; von Rhein, Daniel; van Hulzen, Kimm J E; Dammers, Janneke; Kan, Cornelis C; Buitelaar, Jan K; Norris, David G; Franke, BarbaraJournal of attention disorders.2018 Feb;26374770
Backward multiple imputation estimation of the conditional lifetime expectancy function with application to censored human longevity data.Kong, Jing; Klein, Barbara E K; Klein, Ronald; Wahba, GraceProceedings of the National Academy of Sciences of the United States of America.2015 Sep 29;26371300
MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI.Fan, Qiuyun; Witzel, Thomas; Nummenmaa, Aapo; Van Dijk, Koene R A; Van Horn, John D; Drews, Michelle K; Somerville, Leah H; Sheridan, Margaret A; Santillana, Rosario M; Snyder, Jenna; Hedden, Trey; Shaw, Emily E; Hollinshead, Marisa O; Renvall, Ville; Zanzonico, Roberta; Keil, Boris; Cauley, Stephen; Polimeni, Jonathan R; Tisdall, Dylan; Buckner, Randy L; Wedeen, Van J; Wald, Lawrence L; Toga, Arthur W; Rosen, Bruce RNeuroImage.2016 Jan 01;26364861
The cardiac sodium channel gene SCN5A and its gene product NaV1.5: Role in physiology and pathophysiology.Veerman, Christiaan C; Wilde, Arthur A M; Lodder, Elisabeth MGene.2015 Dec 1;26361848
Fused Lasso Screening Rules via the Monotonicity of Subdifferentials.Wang, Jie; Fan, Wei; Ye, JiepingIEEE transactions on pattern analysis and machine intelligence.2015 Sep;26353128
Cannabis use in early adolescence: Evidence of amygdala hypersensitivity to signals of threat.Spechler, Philip A; Orr, Catherine A; Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Morton, Aaron; Snowe, Mitchell P; Hudson, Kelsey E; Althoff, Robert R; Higgins, Stephen T; Cattrell, Anna; Flor, Herta; Nees, Frauke; Banaschewski, Tobias; Bokde, Arun L W; Whelan, Robert; Büchel, Christian; Bromberg, Uli; Conrod, Patricia; Frouin, Vincent; Papadopoulos, Dimitri; Gallinat, Jurgen; Heinz, Andreas; Walter, Henrik; Ittermann, Bernd; Gowland, Penny; Paus, Tomá?; Poustka, Luise; Martinot, Jean-Luc; Artiges, Eric; Smolka, Michael N; Schumann, Gunter; Garavan, Hugh; IMAGEN ConsortiumDevelopmental cognitive neuroscience.2015 Dec;26347227
A predictive modeling approach for cell line-specific long-range regulatory interactions.Roy, Sushmita; Siahpirani, Alireza Fotuhi; Chasman, Deborah; Knaack, Sara; Ay, Ferhat; Stewart, Ron; Wilson, Michael; Sridharan, RupaNucleic acids research.2015 Oct 15;26338778
Large-scale extraction of gene interactions from full-text literature using DeepDive.Mallory, Emily K; Zhang, Ce; Ré, Christopher; Altman, Russ BBioinformatics (Oxford, England).2016 Jan 1;26338771
Cognitive heterogeneity in adult attention deficit/hyperactivity disorder: A systematic analysis of neuropsychological measurements.Mostert, Jeanette C; Onnink, A Marten H; Klein, Marieke; Dammers, Janneke; Harneit, Anais; Schulten, Theresa; van Hulzen, Kimm J E; Kan, Cornelis C; Slaats-Willemse, Dorine; Buitelaar, Jan K; Franke, Barbara; Hoogman, MartineEuropean neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology.2015 Nov;26336867
Predicting malignancy from mammography findings and image-guided core biopsies.Ferreira, Pedro; Fonseca, Nuno A; Dutra, Inês; Woods, Ryan; Burnside, ElizabethInternational journal of data mining and bioinformatics.2015;26333262
The Global Alzheimer's Association Interactive Network.Toga, Arthur W; Neu, Scott C; Bhatt, Priya; Crawford, Karen L; Ashish, NaveenAlzheimer's & dementia : the journal of the Alzheimer's Association.2016 Jan;26318022
Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets.Lu, Songjian; Lu, Kevin N; Cheng, Shi-Yuan; Hu, Bo; Ma, Xiaojun; Nystrom, Nicholas; Lu, XinghuaPLoS computational biology.2015 Aug;26317392
Leveraging Interaction between Genetic Variants and Mammographic Findings for Personalized Breast Cancer Diagnosis.Liu, Jie; Wu, Yirong; Ong, Irene; Page, David; Peissig, Peggy; McCarty, Catherine; Onitilo, Adedayo A; Burnside, ElizabethAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2015;26306250
The Matchmaker Exchange: a platform for rare disease gene discovery.Philippakis, Anthony A; Azzariti, Danielle R; Beltran, Sergi; Brookes, Anthony J; Brownstein, Catherine A; Brudno, Michael; Brunner, Han G; Buske, Orion J; Carey, Knox; Doll, Cassie; Dumitriu, Sergiu; Dyke, Stephanie O M; den Dunnen, Johan T; Firth, Helen V; Gibbs, Richard A; Girdea, Marta; Gonzalez, Michael; Haendel, Melissa A; Hamosh, Ada; Holm, Ingrid A; Huang, Lijia; Hurles, Matthew E; Hutton, Ben; Krier, Joel B; Misyura, Andriy; Mungall, Christopher J; Paschall, Justin; Paten, Benedict; Robinson, Peter N; Schiettecatte, François; Sobreira, Nara L; Swaminathan, Ganesh J; Taschner, Peter E; Terry, Sharon F; Washington, Nicole L; Züchner, Stephan; Boycott, Kym M; Rehm, Heidi LHuman mutation.2015 Oct;915-2126295439
Pivotal role of computers and software in mass spectrometry - SEQUEST and 20 years of tandem MS database searching.Yates 3rd, John RJournal of the American Society for Mass Spectrometry.2015 Nov;26286455
Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium.van Erp, T G M; Hibar, D P; Rasmussen, J M; Glahn, D C; Pearlson, G D; Andreassen, O A; Agartz, I; Westlye, L T; Haukvik, U K; Dale, A M; Melle, I; Hartberg, C B; Gruber, O; Kraemer, B; Zilles, D; Donohoe, G; Kelly, S; McDonald, C; Morris, D W; Cannon, D M; Corvin, A; Machielsen, M W J; Koenders, L; de Haan, L; Veltman, D J; Satterthwaite, T D; Wolf, D H; Gur, R C; Gur, R E; Potkin, S G; Mathalon, D H; Mueller, B A; Preda, A; Macciardi, F; Ehrlich, S; Walton, E; Hass, J; Calhoun, V D; Bockholt, H J; Sponheim, S R; Shoemaker, J M; van Haren, N E M; Pol, H E H; Ophoff, R A; Kahn, R S; Roiz-Santiañez, R; Crespo-Facorro, B; Wang, L; Alpert, K I; Jönsson, E G; Dimitrova, R; Bois, C; Whalley, H C; McIntosh, A M; Lawrie, S M; Hashimoto, R; Thompson, P M; Turner, J AMolecular psychiatry.2016 Apr;26283641
Tissue Inhibitor of Metalloproteinase-1: Actions beyond Matrix Metalloproteinase Inhibition.Lindsey, Merry L; Yabluchanskiy, Andriy; Ma, YonggangCardiology.2015;26279068
The mobilize center: an NIH big data to knowledge center to advance human movement research and improve mobility.Ku, Joy P; Hicks, Jennifer L; Hastie, Trevor; Leskovec, Jure; Ré, Christopher; Delp, Scott LJournal of the American Medical Informatics Association : JAMIA.2015 Nov;26272077
The circular relationship between matrix metalloproteinase-9 and inflammation following myocardial infarction.Deleon-Pennell, Kristine Y; Altara, Raffaele; Yabluchanskiy, Andriy; Modesti, Alessandra; Lindsey, Merry LIUBMB life.2015 Aug;26269290
Simulation-Based Design for Wearable Robotic Systems: An Optimization Framework for Enhancing a Standing Long Jump.Ong, Carmichael F; Hicks, Jennifer L; Delp, Scott LIEEE transactions on bio-medical engineering.2016 05;26258930
Boosting brain connectome classification accuracy in Alzheimer's disease using higher-order singular value decomposition.Zhan, Liang; Liu, Yashu; Wang, Yalin; Zhou, Jiayu; Jahanshad, Neda; Ye, Jieping; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI)Frontiers in neuroscience.2015;26257601
Adaptability of protein structures to enable functional interactions and evolutionary implications.Haliloglu, Turkan; Bahar, IvetCurrent opinion in structural biology.2015 Dec;26254902
ERC analysis: web-based inference of gene function via evolutionary rate covariation.Wolfe, Nicholas W; Clark, Nathan LBioinformatics (Oxford, England).2015 Dec 01;26243019
Smartphone applications to support weight loss: current perspectives.Pellegrini, Christine A; Pfammatter, Angela F; Conroy, David E; Spring, BonnieAdvanced health care technologies.2015 Jul;26236766
SOCR data dashboard: an integrated big data archive mashing medicare, labor, census and econometric information.Husain, Syed S; Kalinin, Alexandr; Truong, Anh; Dinov, Ivo DJournal of big data.2015;26236573
A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes.Gutman, Boris; Fletcher, Thomas; Cardoso, M Jorge; Fleishman, Greg; Lorenzi, Marco; Thompson, Paul; Ourselin, SebastienInformation processing in medical imaging : proceedings of the ... conference.2015 Jul;26236122
External validation of a publicly available computer assisted diagnostic tool for mammographic mass lesions with two high prevalence research datasets.Benndorf, Matthias; Burnside, Elizabeth S; Herda, Christoph; Langer, Mathias; Kotter, ElmarMedical physics.2015 Aug;26233224
Structure and function of cardiac troponin C (TNNC1): Implications for heart failure, cardiomyopathies, and troponin modulating drugs.Li, Monica X; Hwang, Peter MGene.2015 Oct 25;26232335
Heritability of the network architecture of intrinsic brain functional connectivity.Sinclair, Benjamin; Hansell, Narelle K; Blokland, Gabriëlla A M; Martin, Nicholas G; Thompson, Paul M; Breakspear, Michael; de Zubicaray, Greig I; Wright, Margaret J; McMahon, Katie LNeuroImage.2015 Nov 01;26226088
A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes.Gutman, Boris A; Fletcher, P Thomas; Cardoso, M Jorge; Fleishman, Greg M; Lorenzi, Marco; Thompson, Paul M; Ourselin, SebastienInformation processing in medical imaging : proceedings of the ... conference.2015;26221675
Striatal activity and reduced white matter increase frontal activity in youths with family histories of alcohol and other substance-use disorders performing a go/no-go task.Acheson, Ashley; Tagamets, Malle A; Winkler, Anderson; Rowland, Laura M; Mathias, Charles W; Wright, Susan N; Hong, L Elliot; Kochunov, Peter; Dougherty, Donald MBrain and behavior.2015 Jul;26221573
Canonical, stable, general mapping using context schemes.Novak, Adam M; Rosen, Yohei; Haussler, David; Paten, BenedictBioinformatics (Oxford, England).2015 Nov 15;26220960
Simultaneous Longitudinal Registration with Group-Wise Similarity Prior.Fleishman, Greg M; Gutman, Boris A; Fletcher, P Thomas; Thompson, Paul MInformation processing in medical imaging : proceedings of the ... conference.2015;26213451
Controlling False Discovery Rate in Signal Space for Transformation-Invariant Thresholding of Statistical Maps.Li, Junning; Shi, Yonggang; Toga, Arthur WInformation processing in medical imaging : proceedings of the ... conference.2015;26213450
The FHL2 regulation in the transcriptional circuitry of human cancers.Cao, Cyanne Ye; Mok, Simon Wing-Fai; Cheng, Vincent Wing-Sang; Tsui, Stephen Kwok-WingGene.2015 Nov 01;26211626
KnowEnG: a knowledge engine for genomics.Sinha, Saurabh; Song, Jun; Weinshilboum, Richard; Jongeneel, Victor; Han, JiaweiJournal of the American Medical Informatics Association : JAMIA.2015 Nov;26205246
App-enabled trial participation: Tectonic shift or tepid rumble?Friend, Stephen HScience translational medicine.2015 Jul 22;26203077
Big biomedical data as the key resource for discovery science.Toga, Arthur W; Foster, Ian; Kesselman, Carl; Madduri, Ravi; Chard, Kyle; Deutsch, Eric W; Price, Nathan D; Glusman, Gustavo; Heavner, Benjamin D; Dinov, Ivo D; Ames, Joseph; Van Horn, John; Kramer, Roger; Hood, LeroyJournal of the American Medical Informatics Association : JAMIA.2015 Nov;26198305
Assessing incremental value of biomarkers with multi-phase nested case-control studies.Zhou, Qian M; Zheng, Yingye; Chibnik, Lori B; Karlson, Elizabeth W; Cai, TianxiBiometrics.2015 Dec;26195245
The Alzheimer's Disease Neuroimaging Initiative informatics core: A decade in review.Toga, Arthur W; Crawford, Karen LAlzheimer's & dementia : the journal of the Alzheimer's Association.2015 Jul;832-926194316
Cortisol Reactivity to Stress and Its Association With White Matter Integrity in Adults With Schizophrenia.Nugent, Katie L; Chiappelli, Joshua; Sampath, Hemalatha; Rowland, Laura M; Thangavelu, Kavita; Davis, Beshaun; Du, Xiaoming; Muellerklein, Florian; Daughters, Stacey; Kochunov, Peter; Hong, L ElliotPsychosomatic medicine.2015 Sep;26186431
Callosal Function in Pediatric Traumatic Brain Injury Linked to Disrupted White Matter Integrity.Dennis, Emily L; Ellis, Monica U; Marion, Sarah D; Jin, Yan; Moran, Lisa; Olsen, Alexander; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FThe Journal of neuroscience : the official journal of the Society for Neuroscience.2015 Jul 15;26180196
The NIH BD2K center for big data in translational genomics.Paten, Benedict; Diekhans, Mark; Druker, Brian J; Friend, Stephen; Guinney, Justin; Gassner, Nadine; Guttman, Mitchell; Kent, W James; Mantey, Patrick; Margolin, Adam A; Massie, Matt; Novak, Adam M; Nothaft, Frank; Pachter, Lior; Patterson, David; Smuga-Otto, Maciej; Stuart, Joshua M; Van't Veer, Laura; Wold, Barbara; Haussler, DavidJournal of the American Medical Informatics Association : JAMIA.2015 Nov;26174866
ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity.Xu, T; Park, S K; Venable, J D; Wohlschlegel, J A; Diedrich, J K; Cociorva, D; Lu, B; Liao, L; Hewel, J; Han, X; Wong, C C L; Fonslow, B; Delahunty, C; Gao, Y; Shah, H; Yates 3rd, J RJournal of proteomics.2015 Nov 03;26171723
Rsu1 regulates ethanol consumption in Drosophila and humans.Ojelade, Shamsideen A; Jia, Tianye; Rodan, Aylin R; Chenyang, Tao; Kadrmas, Julie L; Cattrell, Anna; Ruggeri, Barbara; Charoen, Pimphen; Lemaitre, Hervé; Banaschewski, Tobias; Büchel, Christian; Bokde, Arun L W; Carvalho, Fabiana; Conrod, Patricia J; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Lubbe, Steven; Martinot, Jean-Luc; Paus, Tomás; Smolka, Michael N; Spanagel, Rainer; O'Reilly, Paul F; Laitinen, Jaana; Veijola, Juha M; Feng, Jianfeng; Desrivières, Sylvane; Jarvelin, Marjo-Riitta; IMAGEN Consortium; Schumann, Gunter; Rothenfluh, AdrianProceedings of the National Academy of Sciences of the United States of America.2015 Jul 28;26170296
Rich club network analysis shows distinct patterns of disruption in frontotemporal dementia and Alzheimer's disease.Daianu, Madelaine; Jahanshad, Neda; Villalon-Reina, Julio E; Mendez, Mario F; Bartzokis, George; Jimenez, Elvira E; Joshi, Aditi; Barsuglia, Joseph; Thompson, Paul MMathematics and visualization.2014;26161050
Prioritizing Proteomics Assay Development for Clinical Translation.Lam, Maggie P Y; Venkatraman, Vidya; Cao, Quan; Wang, Ding; Dincer, T Umut; Lau, Edward; Su, Andrew I; Xing, Yi; Ge, Junbo; Ping, Peipei; Van Eyk, Jennifer EJournal of the American College of Cardiology.2015 Jul 14;26160638
Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification.Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Beavis, Ronald C; Nesvizhskii, Alexey I; Deutsch, Eric WJournal of proteome research.2015 Sep 4;26155816
Big Data: Astronomical or Genomical?Stephens, Zachary D; Lee, Skylar Y; Faghri, Faraz; Campbell, Roy H; Zhai, Chengxiang; Efron, Miles J; Iyer, Ravishankar; Schatz, Michael C; Sinha, Saurabh; Robinson, Gene EPLoS biology.2015 Jul;26151137
State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet.Deutsch, Eric W; Sun, Zhi; Campbell, David; Kusebauch, Ulrike; Chu, Caroline S; Mendoza, Luis; Shteynberg, David; Omenn, Gilbert S; Moritz, Robert LJournal of proteome research.2015 Sep 4;26139527
The center for causal discovery of biomedical knowledge from big data.Cooper, Gregory F; Bahar, Ivet; Becich, Michael J; Benos, Panayiotis V; Berg, Jeremy; Espino, Jeremy U; Glymour, Clark; Jacobson, Rebecca Crowley; Kienholz, Michelle; Lee, Adrian V; Lu, Xinghua; Scheines, Richard; Center for Causal Discovery teamJournal of the American Medical Informatics Association : JAMIA.2015 Nov;26138794
The KCNE2 K? channel regulatory subunit: Ubiquitous influence, complex pathobiology.Abbott, Geoffrey WGene.2015 Sep 15;26123744
Development of the human fetal hippocampal formation during early second trimester.Ge, Xinting; Shi, Yonggang; Li, Junning; Zhang, Zhonghe; Lin, Xiangtao; Zhan, Jinfeng; Ge, Haitao; Xu, Junhai; Yu, Qiaowen; Leng, Yuan; Teng, Gaojun; Feng, Lei; Meng, Haiwei; Tang, Yuchun; Zang, Fengchao; Toga, Arthur W; Liu, ShuweiNeuroImage.2015 Oct 01;26123377
Subcortical brain alterations in major depressive disorder: findings from the ENIGMA Major Depressive Disorder working group.Schmaal, L; Veltman, D J; van Erp, T G M; Sämann, P G; Frodl, T; Jahanshad, N; Loehrer, E; Tiemeier, H; Hofman, A; Niessen, W J; Vernooij, M W; Ikram, M A; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Hoehn, D; Czisch, M; Lagopoulos, J; Hatton, S N; Hickie, I B; Goya-Maldonado, R; Krämer, B; Gruber, O; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Martin, N G; Gillespie, N A; Wright, M J; Hall, G B; MacQueen, G M; Frey, E M; Carballedo, A; van Velzen, L S; van Tol, M J; van der Wee, N J; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Nickson, T; McIntosh, A M; Papmeyer, M; Whalley, H C; Sussmann, J E; Godlewska, B R; Cowen, P J; Fischer, F H; Rose, M; Penninx, B W J H; Thompson, P M; Hibar, D PMolecular psychiatry.2016 06;26122586
The center for expanded data annotation and retrieval.Musen, Mark A; Bean, Carol A; Cheung, Kei-Hoi; Dumontier, Michel; Durante, Kim A; Gevaert, Olivier; Gonzalez-Beltran, Alejandra; Khatri, Purvesh; Kleinstein, Steven H; O'Connor, Martin J; Pouliot, Yannick; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Wiser, Jeffrey A; CEDAR teamJournal of the American Medical Informatics Association : JAMIA.2015 Nov;26112029
Perfusion shift from white to gray matter may account for processing speed deficits in schizophrenia.Wright, Susan N; Hong, L Elliot; Winkler, Anderson M; Chiappelli, Joshua; Nugent, Katie; Muellerklein, Florian; Du, Xioming; Rowland, Laura M; Wang, Danny J J; Kochunov, PeterHuman brain mapping.2015 Oct;26108347
Personalized Modeling for Prediction with Decision-Path Models.Visweswaran, Shyam; Ferreira, Antonio; Ribeiro, Guilherme A; Oliveira, Alexandre C; Cooper, Gregory FPloS one.2015;26098570
atSNP: transcription factor binding affinity testing for regulatory SNP detection.Zuo, Chandler; Shin, Sunyoung; Kele?, SündüzBioinformatics (Oxford, England).2015 Oct 15;26092860
Brain Imaging and Neurodevelopment in HIV-uninfected Thai Children Born to HIV-infected Mothers.Jahanshad, Neda; Couture, Marie-Claude; Prasitsuebsai, Wasana; Nir, Talia M; Aurpibul, Linda; Thompson, Paul M; Pruksakaew, Kanchana; Lerdlum, Sukalaya; Visrutaratna, Pannee; Catella, Stephanie; Desai, Akash; Kerr, Stephen J; Puthanakit, Thanyawee; Paul, Robert; Ananworanich, Jintanat; Valcour, Victor G; SEARCH 012 and PREDICT Study GroupsThe Pediatric infectious disease journal.2015 Sep;26090574
Edge-Centered DTI Connectivity Analysis: Application to Schizophrenia.Herskovits, Edward H; Hong, L Elliot; Kochunov, Peter; Sampath, Hemalatha; Chen, RongNeuroinformatics.2015 Oct;26078102
Atrial natriuretic peptide in cardiovascular biology and disease (NPPA).Song, Wei; Wang, Hao; Wu, QingyuGene.2015 Sep 10;26074089
Functions of myosin light chain-2 (MYL2) in cardiac muscle and disease.Sheikh, Farah; Lyon, Robert C; Chen, JuGene.2015 Sep 10;26074085
Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome.Hewitt, Kyle J; Kim, Duk Hyoung; Devadas, Prithvia; Prathibha, Rajalekshmi; Zuo, Chandler; Sanalkumar, Rajendran; Johnson, Kirby D; Kang, Yoon-A; Kim, Jin-Soo; Dewey, Colin N; Keles, Sunduz; Bresnick, Emery HMolecular cell.2015 Jul 2;26073540
Exploiting ontology graph for predicting sparsely annotated gene function.Wang, Sheng; Cho, Hyunghoon; Zhai, ChengXiang; Berger, Bonnie; Peng, JianBioinformatics (Oxford, England).2015 Jun 15;26072504
Identification of causal genes for complex traits.Hormozdiari, Farhad; Kichaev, Gleb; Yang, Wen-Yun; Pasaniuc, Bogdan; Eskin, EleazarBioinformatics (Oxford, England).2015 Jun 15;i206-1326072484
BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks.Richiardi, Jonas; Altmann, Andre; Milazzo, Anna-Clare; Chang, Catie; Chakravarty, M Mallar; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia; Fauth-Bühler, Mira; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Lemaître, Hervé; Mann, Karl F; Martinot, Jean-Luc; Nees, Frauke; Paus, Tomá?; Pausova, Zdenka; Rietschel, Marcella; Robbins, Trevor W; Smolka, Michael N; Spanagel, Rainer; Ströhle, Andreas; Schumann, Gunter; Hawrylycz, Mike; Poline, Jean-Baptiste; Greicius, Michael D; IMAGEN consortiumScience (New York, N.Y.).2015 Jun 12;26068849
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.Cancer Genome Atlas Research Network (see original citation for additional authors)The New England journal of medicine.2015 Jun 25;26061751
Sharing data in the global alzheimer's association interactive network.Neu, Scott C; Crawford, Karen L; Toga, Arthur WNeuroImage.2015 Jun 4;26049147
Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research.Chen, Bin; Sirota, Marina; Fan-Minogue, Hua; Hadley, Dexter; Butte, Atul JBMC medical genomics.2015;26043652
Rich club analysis in the Alzheimer's disease connectome reveals a relatively undisturbed structural core network.Daianu, Madelaine; Jahanshad, Neda; Nir, Talia M; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeHuman brain mapping.2015 Aug;3087-10326037224
Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium.van Erp, T G M; Hibar, D P; Rasmussen, J M; Glahn, D C; Pearlson, G D; Andreassen, O A; Agartz, I; Westlye, L T; Haukvik, U K; Dale, A M; Melle, I; Hartberg, C B; Gruber, O; Kraemer, B; Zilles, D; Donohoe, G; Kelly, S; McDonald, C; Morris, D W; Cannon, D M; Corvin, A; Machielsen, M W J; Koenders, L; de Haan, L; Veltman, D J; Satterthwaite, T D; Wolf, D H; Gur, R C; Gur, R E; Potkin, S G; Mathalon, D H; Mueller, B A; Preda, A; Macciardi, F; Ehrlich, S; Walton, E; Hass, J; Calhoun, V D; Bockholt, H J; Sponheim, S R; Shoemaker, J M; van Haren, N E M; Hulshoff Pol, H E; Pol, H E H; Ophoff, R A; Kahn, R S; Roiz-Santiañez, R; Crespo-Facorro, B; Wang, L; Alpert, K I; Jönsson, E G; Dimitrova, R; Bois, C; Whalley, H C; McIntosh, A M; Lawrie, S M; Hashimoto, R; Thompson, P M; Turner, J AMolecular psychiatry.2016 Apr;26033243
Therapeutically Targetable ALK Mutations in Leukemia.Maxson, Julia E; Davare, Monika A; Luty, Samuel B; Eide, Christopher A; Chang, Bill H; Loriaux, Marc M; Tognon, Cristina E; Bottomly, Daniel; Wilmot, Beth; McWeeney, Shannon K; Druker, Brian J; Tyner, Jeffrey WCancer research.2015 Jun 01;26032424
Accurate and fast multiple-testing correction in eQTL studies.Sul, Jae Hoon; Raj, Towfique; de Jong, Simone; de Bakker, Paul I W; Raychaudhuri, Soumya; Ophoff, Roel A; Stranger, Barbara E; Eskin, Eleazar; Han, BuhmAmerican journal of human genetics.2015 Jun 4;857-6826027500
Multi-resolution statistical analysis of brain connectivity graphs in preclinical Alzheimer's disease.Kim, Won Hwa; Adluru, Nagesh; Chung, Moo K; Okonkwo, Ozioma C; Johnson, Sterling C; B Bendlin, Barbara; Singh, VikasNeuroImage.2015 Sep;26025289
GLO-STIX: Graph-Level Operations for Specifying Techniques and Interactive eXploration.Stolper, Charles D; Kahng, Minsuk; Lin, Zhiyuan; Foerster, Florian; Goel, Aakash; Stasko, John; Chau, Duen HorngIEEE transactions on visualization and computer graphics.2014 Dec 31;26005315
From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics.Lavallée-Adam, Mathieu; Park, Sung Kyu Robin; Martínez-Bartolomé, Salvador; He, Lin; Yates 3rd, John RJournal of the American Society for Mass Spectrometry.2015 Nov;26002791
Trans-species learning of cellular signaling systems with bimodal deep belief networks.Chen, Lujia; Cai, Chunhui; Chen, Vicky; Lu, XinghuaBioinformatics (Oxford, England).2015 Sep 15;25995230
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection.Ewing, Adam D; Houlahan, Kathleen E; Hu, Yin; Ellrott, Kyle; Caloian, Cristian; Yamaguchi, Takafumi N; Bare, J Christopher; P'ng, Christine; Waggott, Daryl; Sabelnykova, Veronica Y; ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants; Kellen, Michael R; Norman, Thea C; Haussler, David; Friend, Stephen H; Stolovitzky, Gustavo; Margolin, Adam A; Stuart, Joshua M; Boutros, Paul CNature methods.2015 Jul;25984700
Association of Protein Phosphatase PPM1G With Alcohol Use Disorder and Brain Activity During Behavioral Control in a Genome-Wide Methylation Analysis.Ruggeri, Barbara; Nymberg, Charlotte; Vuoksimaa, Eero; Lourdusamy, Anbarasu; Wong, Cybele P; Carvalho, Fabiana M; Jia, Tianye; Cattrell, Anna; Macare, Christine; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Fauth-Bühler, Mira; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Pausova, Zdenka; Paus, Tomá?; Rietschel, Marcella; Robbins, Trevor; Smolka, Michael N; Spanagel, Rainer; Bakalkin, Georgy; Mill, Jonathan; Sommer, Wolfgang H; Rose, Richard J; Yan, Jia; Aliev, Fazil; Dick, Danielle; Kaprio, Jaakko; Desrivières, Sylvane; Schumann, Gunter; IMAGEN ConsortiumThe American journal of psychiatry.2015 Jun;25982659
The Image and Data Archive at the Laboratory of Neuro Imaging.Crawford, Karen L; Neu, Scott C; Toga, Arthur WNeuroImage.2015 May 14;25982516
The digital phenotype.Jain, Sachin H; Powers, Brian W; Hawkins, Jared B; Brownstein, John SNature biotechnology.2015 May;25965751
Human paraoxonase-1 (PON1): Gene structure and expression, promiscuous activities and multiple physiological roles.Mackness, Mike; Mackness, BhartiGene.2015 Aug 1;25965560
Deviant white matter structure in adults with attention-deficit/hyperactivity disorder points to aberrant myelination and affects neuropsychological performance.Onnink, A Marten H; Zwiers, Marcel P; Hoogman, Martine; Mostert, Jeanette C; Dammers, Janneke; Kan, Cornelis C; Vasquez, Alejandro Arias; Schene, Aart H; Buitelaar, Jan; Franke, BarbaraProgress in neuro-psychopharmacology & biological psychiatry.2015 Dec 03;25956761
Structural Brain Changes in Early-Onset Alzheimer's Disease Subjects Using the LONI Pipeline Environment.Moon, Seok Woo; Dinov, Ivo D; Hobel, Sam; Zamanyan, Alen; Choi, Young Chil; Shi, Ran; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging InitiativeJournal of neuroimaging : official journal of the American Society of Neuroimaging.2015 Sep;728-3725940587
Muscle LIM Protein: Master regulator of cardiac and skeletal muscle functions.Vafiadaki, Elizabeth; Arvanitis, Demetrios A; Sanoudou, DespinaGene.2015 Jul 15;25936993
Comparison of nine tractography algorithms for detecting abnormal structural brain networks in Alzheimer's disease.Zhan, Liang; Zhou, Jiayu; Wang, Yalin; Jin, Yan; Jahanshad, Neda; Prasad, Gautam; Nir, Talia M; Leonardo, Cassandra D; Ye, Jieping; Thompson, Paul M; For The Alzheimer's Disease Neuroimaging InitiativeFrontiers in aging neuroscience.2015;25926791
Recombination Analysis of Herpes Simplex Virus 1 Reveals a Bias toward GC Content and the Inverted Repeat Regions.Lee, Kyubin; Kolb, Aaron W; Sverchkov, Yuriy; Cuellar, Jacqueline A; Craven, Mark; Brandt, Curtis RJournal of virology.2015 Jul;25926637
Continuous in-the-field measurement of heart rate: Correlates of drug use, craving, stress, and mood in polydrug users.Kennedy, Ashley P; Epstein, David H; Jobes, Michelle L; Agage, Daniel; Tyburski, Matthew; Phillips, Karran A; Ali, Amin Ahsan; Bari, Rummana; Hossain, Syed Monowar; Hovsepian, Karen; Rahman, Md Mahbubur; Ertin, Emre; Kumar, Santosh; Preston, Kenzie LDrug and alcohol dependence.2015 Jun 01;25920802
Toward a complete dataset of drug-drug interaction information from publicly available sources.Ayvaz, Serkan; Horn, John; Hassanzadeh, Oktie; Zhu, Qian; Stan, Johann; Tatonetti, Nicholas P; Vilar, Santiago; Brochhausen, Mathias; Samwald, Matthias; Rastegar-Mojarad, Majid; Dumontier, Michel; Boyce, Richard DJournal of biomedical informatics.2015 Jun;25917055
Multiset Statistics for Gene Set Analysis.Newton, Michael A; Wang, ZhishiAnnual review of statistics and its application.2015 Apr;25914887
A Transformation Similarity Constraint for Groupwise Nonlinear Registration in Longitudinal Neuro Imaging Studies.Fleishman, Greg M; Gutman, Boris A; Fletcher, P Thomas; Thompson, PaulProceedings of SPIE--the International Society for Optical Engineering.2015 Mar 20;25914796
Structured learning for spatial information extraction from biomedical text: bacteria biotopes.Kordjamshidi, Parisa; Roth, Dan; Moens, Marie-FrancineBMC bioinformatics.2015;25909637
Novel Neuroimaging Methods to Understand How HIV Affects the Brain.Thompson, Paul M; Jahanshad, NedaCurrent HIV/AIDS reports.2015 Jun;25902966
Crowdsourcing in biomedicine: challenges and opportunities.Khare, Ritu; Good, Benjamin M; Leaman, Robert; Su, Andrew I; Lu, ZhiyongBriefings in bioinformatics.2016 Jan;25888696
Alterations in frontal white matter neurochemistry and microstructure in schizophrenia: implications for neuroinflammation.Chiappelli, J; Hong, L E; Wijtenburg, S A; Du, X; Gaston, F; Kochunov, P; Rowland, L MTranslational psychiatry.2015 Apr 14;25871973
Estimating Drivers' Stress from GPS Traces.Vhaduri, Sudip; Ali, Amin; Sharmin, Moushumi; Hovsepian, Karen; Kumar, SantoshProceedings : AutomotiveUI 2014 : 6th International Conference on Automotive User Interfaces and Interactive Vehicular Applications : September 17-19, 2014, Seattle, Washington, USA. International Conference on Automotive User Interface....2014 Sep 17;25866847
MMap: Fast Billion-Scale Graph Computation on a PC via Memory Mapping.Lin, Zhiyuan; Kahng, Minsuk; Sabrin, Kaeser Md; Chau, Duen Horng Polo; Lee, Ho; Kang, UProceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data.2014 Oct;25866846
Interactive Querying over Large Network Data: Scalability, Visualization, and Interaction Design.Pienta, Robert; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen HorngIUI. International Conference on Intelligent User Interfaces.2015 Mar-Apr;25859567
Inferring Meal Eating Activities in Real World Settings from Ambient Sounds: A Feasibility Study.Thomaz, Edison; Zhang, Cheng; Essa, Irfan; Abowd, Gregory DIUI. International Conference on Intelligent User Interfaces.2015 Mar-Apr;25859566
MAGE: Matching Approximate Patterns in Richly-Attributed Graphs.Pienta, Robert; Tamersoy, Acar; Tong, Hanghang; Chau, Duen HorngProceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data.2014 Oct;25859565
Towards Scalable Graph Computation on Mobile Devices.Chen, Yiqi; Lin, Zhiyuan; Pienta, Robert; Kahng, Minsuk; Chau, Duen HorngProceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data.2014 Oct;25859564
7T Multi-shell Hybrid Diffusion Imaging (HYDI) for Mapping Brain Connectivity in Mice.Daianu, Madelaine; Jahanshad, Neda; Villalon-Reina, Julio E; Prasad, Gautam; Jacobs, Russell E; Barnes, Samuel; Zlokovic, Berislav V; Montagne, Axel; Thompson, Paul MProceedings of SPIE--the International Society for Optical Engineering.2015 Mar 20;25859293
Communication of brain network core connections altered in behavioral variant frontotemporal dementia but possibly preserved in early-onset Alzheimer's disease.Daianu, Madelaine; Jahanshad, Neda; Mendez, Mario F; Bartzokis, George; Jimenez, Elvira E; Thompson, Paul MProceedings of SPIE--the International Society for Optical Engineering.2015 Mar 20;25848494
EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.Leng, Ning; Li, Yuan; McIntosh, Brian E; Nguyen, Bao Kim; Duffin, Bret; Tian, Shulan; Thomson, James A; Dewey, Colin N; Stewart, Ron; Kendziorski, ChristinaBioinformatics (Oxford, England).2015 Aug 15;25847007
Subcortical shape and volume abnormalities in an elderly HIV+ cohort.Wade, Benjamin S C; Valcour, Victor; Busovaca, Edgar; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Wang, Yalin; Thompson, Paul MProceedings of SPIE--the International Society for Optical Engineering.2015 Mar 17;25844123
Are We There Yet? Feasibility of Continuous Stress Assessment via Wireless Physiological Sensors.Rahman, Mahbubur; Bari, Rummana; Ali, Amin Ahsan; Sharmin, Moushumi; Raij, Andrew; Hovsepian, Karen; Hossain, Syed Monowar; Ertin, Emre; Kennedy, Ashley; Epstein, David H; Preston, Kenzie L; Jobes, Michelle; Beck, J Gayle; Kedia, Satish; Ward, Kenneth D; al'Absi, Mustafa; Kumar, SantoshACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine.2014;25821861
Harnessing the heart of big data.Scruggs, Sarah B; Watson, Karol; Su, Andrew I; Hermjakob, Henning; Yates 3rd, John R; Lindsey, Merry L; Ping, PeipeiCirculation research.2015 Mar 27;25814682
Fast and powerful heritability inference for family-based neuroimaging studies.Ganjgahi, Habib; Winkler, Anderson M; Glahn, David C; Blangero, John; Kochunov, Peter; Nichols, Thomas ENeuroImage.2015 Jul 15;25812717
Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified.Marinov, Georgi K; Wang, Jie; Handler, Dominik; Wold, Barbara J; Weng, Zhiping; Hannon, Gregory J; Aravin, Alexei A; Zamore, Phillip D; Brennecke, Julius; Toth, Katalin FejesDevelopmental cell.2015 Mar 23;25805138
Assessing the Availability of Users to Engage in Just-in-Time Intervention in the Natural Environment.Sarker, Hillol; Sharmin, Moushumi; Ali, Amin Ahsan; Rahman, Md Mahbubur; Bari, Rummana; Hossain, Syed Monowar; Kumar, SantoshProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2014;25798455
Cortical thickness and brain volumetric analysis in body dysmorphic disorder.Madsen, Sarah K; Zai, Alex; Pirnia, Tara; Arienzo, Donatello; Zhan, Liang; Moody, Teena D; Thompson, Paul M; Feusner, Jamie DPsychiatry research.2015 Apr 30;25797401
Shared genetic variance between obesity and white matter integrity in Mexican Americans.Spieker, Elena A; Kochunov, Peter; Rowland, Laura M; Sprooten, Emma; Winkler, Anderson M; Olvera, Rene L; Almasy, Laura; Duggirala, Ravi; Fox, Peter T; Blangero, John; Glahn, David C; Curran, Joanne EFrontiers in genetics.2015;25763009
Spatial and temporal dynamics of the cardiac mitochondrial proteome.Lau, Edward; Huang, Derrick; Cao, Quan; Dincer, T Umut; Black, Caitie M; Lin, Amanda J; Lee, Jessica M; Wang, Ding; Liem, David A; Lam, Maggie P Y; Ping, PeipeiExpert review of proteomics.2015 Apr;25752359
Contributions of Feature Binding During Encoding and Functional Connectivity of the Medial Temporal Lobe Structures to Episodic Memory Deficits Across the Prodromal and First-Episode Phases of Schizophrenia.Haut, Kristen M; van Erp, Theo G M; Knowlton, Barbara; Bearden, Carrie E; Subotnik, Kenneth; Ventura, Joseph; Nuechterlein, Keith H; Cannon, Tyrone DClinical psychological science : a journal of the Association for Psychological Science.2015 Mar;25750836
Medical data transformation using rewriting.Ashish, Naveen; Toga, Arthur WFrontiers in neuroinformatics.2015;25750622
Heritability of fractional anisotropy in human white matter: a comparison of Human Connectome Project and ENIGMA-DTI data.Kochunov, Peter; Jahanshad, Neda; Marcus, Daniel; Winkler, Anderson; Sprooten, Emma; Nichols, Thomas E; Wright, Susan N; Hong, L Elliot; Patel, Binish; Behrens, Timothy; Jbabdi, Saad; Andersson, Jesper; Lenglet, Christophe; Yacoub, Essa; Moeller, Steen; Auerbach, Eddie; Ugurbil, Kamil; Sotiropoulos, Stamatios N; Brouwer, Rachel M; Landman, Bennett; Lemaitre, Hervé; den Braber, Anouk; Zwiers, Marcel P; Ritchie, Stuart; van Hulzen, Kimm; Almasy, Laura; Curran, Joanne; deZubicaray, Greig I; Duggirala, Ravi; Fox, Peter; Martin, Nicholas G; McMahon, Katie L; Mitchell, Braxton; Olvera, Rene L; Peterson, Charles; Starr, John; Sussmann, Jessika; Wardlaw, Joanna; Wright, Margie; Boomsma, Dorret I; Kahn, Rene; de Geus, Eco J C; Williamson, Douglas E; Hariri, Ahmad; van 't Ent, Dennis; Bastin, Mark E; McIntosh, Andrew; Deary, Ian J; Hulshoff Pol, Hilleke E; Blangero, John; Thompson, Paul M; Glahn, David C; Van Essen, David CNeuroImage.2015 May 01;25747917
White matter disruption in moderate/severe pediatric traumatic brain injury: advanced tract-based analyses.Dennis, Emily L; Jin, Yan; Villalon-Reina, Julio E; Zhan, Liang; Kernan, Claudia L; Babikian, Talin; Mink, Richard B; Babbitt, Christopher J; Johnson, Jeffrey L; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FNeuroImage. Clinical.2015;25737958
Genome-Wide Analyses of Working-Memory Ability: A Review.Knowles, E E M; Mathias, S R; McKay, D R; Sprooten, E; Blangero, John; Almasy, Laura; Glahn, D CCurrent behavioral neuroscience reports.2014 Dec;25729637
Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model.Furlotte, Nicholas A; Eskin, EleazarGenetics.2015 May;59-6825724382
A Pilot Randomized Trial of Text-Messaging for Symptom Awareness and Diabetes Knowledge in Adolescents With Type 1 Diabetes.Han, Yi; Faulkner, Melissa Spezia; Fritz, Heather; Fadoju, Doris; Muir, Andrew; Abowd, Gregory D; Head, Lauren; Arriaga, Rosa IJournal of pediatric nursing.2015 Nov-Dec;25720675
Cognitive decline preceding the onset of psychosis in patients with 22q11.2 deletion syndrome.Vorstman, Jacob A S; Breetvelt, Elemi J; Duijff, Sasja N; Eliez, Stephan; Schneider, Maude; Jalbrzikowski, Maria; Armando, Marco; Vicari, Stefano; Shashi, Vandana; Hooper, Stephen R; Chow, Eva W C; Fung, Wai Lun Alan; Butcher, Nancy J; Young, Donald A; McDonald-McGinn, Donna M; Vogels, Annick; van Amelsvoort, Therese; Gothelf, Doron; Weinberger, Ronnie; Weizman, Abraham; Klaassen, Petra W J; Koops, Sanne; Kates, Wendy R; Antshel, Kevin M; Simon, Tony J; Ousley, Opal Y; Swillen, Ann; Gur, Raquel E; Bearden, Carrie E; Kahn, René S; Bassett, Anne S; International Consortium on Brain and Behavior in 22q11.2 Deletion SyndromeJAMA psychiatry.2015 Apr;25715178
Regional hippocampal damage in heart failure.Woo, Mary A; Ogren, Jennifer A; Abouzeid, Christiane M; Macey, Paul M; Sairafian, Kevin G; Saharan, Priya S; Thompson, Paul M; Fonarow, Gregg C; Hamilton, Michele A; Harper, Ronald M; Kumar, RajeshEuropean journal of heart failure.2015 May;25704495
Predicting the Naturalistic Course of Major Depressive Disorder Using Clinical and Multimodal Neuroimaging Information: A Multivariate Pattern Recognition Study.Schmaal, Lianne; Marquand, Andre F; Rhebergen, Didi; van Tol, Marie-José; Ruhé, Henricus G; van der Wee, Nic J A; Veltman, Dick J; Penninx, Brenda W J HBiological psychiatry.2015 Aug 15;25702259
D-ribose aids heart failure patients with preserved ejection fraction and diastolic dysfunction: a pilot study.Bayram, Melike; St Cyr, J A; Abraham, William TTherapeutic advances in cardiovascular disease.2015 Jun;25701016
A novel cortical thickness estimation method based on volumetric Laplace-Beltrami operator and heat kernel.Wang, Gang; Zhang, Xiaofeng; Su, Qingtang; Shi, Jie; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging InitiativeMedical image analysis.2015 May;4202425700360
Integrative analysis of 111 reference human epigenomes.Roadmap Epigenomics Consortium; Kundaje, Anshul; Meuleman, Wouter; Ernst, Jason; Bilenky, Misha; Yen, Angela; Heravi-Moussavi, Alireza; Kheradpour, Pouya; Zhang, Zhizhuo; Wang, Jianrong; Ziller, Michael J; Amin, Viren; Whitaker, John W; Schultz, Matthew D; Ward, Lucas D; Sarkar, Abhishek; Quon, Gerald; Sandstrom, Richard S; Eaton, Matthew L; Wu, Yi-Chieh; Pfenning, Andreas R; Wang, Xinchen; Claussnitzer, Melina; Liu, Yaping; Coarfa, Cristian; Harris, R Alan; Shoresh, Noam; Epstein, Charles B; Gjoneska, Elizabeta; Leung, Danny; Xie, Wei; Hawkins, R David; Lister, Ryan; Hong, Chibo; Gascard, Philippe; Mungall, Andrew J; Moore, Richard; Chuah, Eric; Tam, Angela; Canfield, Theresa K; Hansen, R Scott; Kaul, Rajinder; Sabo, Peter J; Bansal, Mukul S; Carles, Annaick; Dixon, Jesse R; Farh, Kai-How; Feizi, Soheil; Karlic, Rosa; Kim, Ah-Ram; Kulkarni, Ashwinikumar; Li, Daofeng; Lowdon, Rebecca; Elliott, GiNell; Mercer, Tim R; Neph, Shane J; Onuchic, Vitor; Polak, Paz; Rajagopal, Nisha; Ray, Pradipta; Sallari, Richard C; Siebenthall, Kyle T; Sinnott-Armstrong, Nicholas A; Stevens, Michael; Thurman, Robert E; Wu, Jie; Zhang, Bo; Zhou, Xin; Beaudet, Arthur E; Boyer, Laurie A; De Jager, Philip L; Farnham, Peggy J; Fisher, Susan J; Haussler, David; Jones, Steven J M; Li, Wei; Marra, Marco A; McManus, Michael T; Sunyaev, Shamil; Thomson, James A; Tlsty, Thea D; Tsai, Li-Huei; Wang, Wei; Waterland, Robert A; Zhang, Michael Q; Chadwick, Lisa H; Bernstein, Bradley E; Costello, Joseph F; Ecker, Joseph R; Hirst, Martin; Meissner, Alexander; Milosavljevic, Aleksandar; Ren, Bing; Stamatoyannopoulos, John A; Wang, Ting; Kellis, ManolisNature.2015 Feb 19;317-3025693563
The Genome 10K Project: a way forward.Koepfli, Klaus-Peter; Paten, Benedict; Genome 10K Community of Scientists; O'Brien, Stephen JAnnual review of animal biosciences.2015;25689317
Improved data analysis for the MinION nanopore sequencer.Jain, Miten; Fiddes, Ian T; Miga, Karen H; Olsen, Hugh E; Paten, Benedict; Akeson, MarkNature methods.2015 Apr;25686389
Evolutionary signatures amongst disease genes permit novel methods for gene prioritization and construction of informative gene-based networks.Priedigkeit, Nolan; Wolfe, Nicholas; Clark, Nathan LPLoS genetics.2015 Feb;25679399
Association of BNP and Troponin Levels with Outcome among Cardiac Resynchronization Therapy Recipients.Shalaby, Alaa A; Abraham, William T; Fonarow, Gregg C; Bersohn, Malcolm M; Gorcsan 3rd, John; Lee, Li-Yin; Halilovic, Jasmina; Saba, Samir; Maisel, Alan; Singh, Jagmeet P; Sonel, Ali; Kadish, AlanPacing and clinical electrophysiology : PACE.2015 May;25677851
Frontal and striatal alterations associated with psychopathic traits in adolescents.Yang, Yaling; Narr, Katherine L; Baker, Laura A; Joshi, Shantanu H; Jahanshad, Neda; Raine, Adrian; Thompson, Paul MPsychiatry research.2015 Mar 30;25676553
Gene interactions and structural brain change in early-onset Alzheimer's disease subjects using the pipeline environment.Moon, Seok Woo; Dinov, Ivo D; Zamanyan, Alen; Shi, Ran; Genco, Alex; Hobel, Sam; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging Initiative (ADNI)Psychiatry investigation.2015 Jan;25670955
Evaluation of an electronic health record-supported obesity management protocol implemented in a community health center: a cautionary note.Steglitz, Jeremy; Sommers, Mary; Talen, Mary R; Thornton, Louise K; Spring, BonnieJournal of the American Medical Informatics Association : JAMIA.2015 Jul;25665700
Database of genomic biomarkers for cancer drugs and clinical targetability in solid tumors.Dienstmann, Rodrigo; Jang, In Sock; Bot, Brian; Friend, Stephen; Guinney, JustinCancer discovery.2015 Feb;25656898
Impact of Early and Late Visual Deprivation on the Structure of the Corpus Callosum: A Study Combining Thickness Profile with Surface Tensor-Based Morphometry.Shi, Jie; Collignon, Olivier; Xu, Liang; Wang, Gang; Kang, Yue; Leporé, Franco; Lao, Yi; Joshi, Anand A; Leporé, Natasha; Wang, YalinNeuroinformatics.2015 Jul;25649876
Prevalence of metabolic syndrome and its association with physical capacity, disability, and self-rated health in Lifestyle Interventions and Independence for Elders Study participants.Botoseneanu, Anda; Ambrosius, Walter T; Beavers, Daniel P; de Rekeneire, Nathalie; Anton, Stephen; Church, Timothy; Folta, Sara C; Goodpaster, Bret H; King, Abby C; Nicklas, Barbara J; Spring, Bonnie; Wang, Xuewen; Gill, Thomas M; LIFE Study GroupsJournal of the American Geriatrics Society.2015 Feb;25645664
Sleep disordered breathing and post-discharge mortality in patients with acute heart failure.Khayat, Rami; Jarjoura, David; Porter, Kyle; Sow, Angela; Wannemacher, Jacob; Dohar, Robert; Pleister, Adam; Abraham, William TEuropean heart journal.2015 Jun 14;25636743
Social embeddedness in an online weight management programme is linked to greater weight loss.Poncela-Casasnovas, Julia; Spring, Bonnie; McClary, Daniel; Moller, Arlen C; Mukogo, Rufaro; Pellegrini, Christine A; Coons, Michael J; Davidson, Miriam; Mukherjee, Satyam; Nunes Amaral, Luis AJournal of the Royal Society, Interface.2015 Mar 6;25631561
Detecting and targetting oncogenic fusion proteins in the genomic era.Davare, Monika A; Tognon, Cristina EBiology of the cell.2015 May;25631473
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics.Deutsch, Eric W; Mendoza, Luis; Shteynberg, David; Slagel, Joseph; Sun, Zhi; Moritz, Robert LProteomics. Clinical applications.2015 Aug;25631240
Genomic structural variants are linked with intellectual disability.Bulayeva, Kazima; Lesch, Klaus-Peter; Bulayev, Oleg; Walsh, Christopher; Glatt, Stephen; Gurgenova, Farida; Omarova, Jamilja; Berdichevets, Irina; Thompson, Paul MJournal of neural transmission (Vienna, Austria : 1996).2015 Sep;25626716
Design and protocol of a randomized multiple behavior change trial: Make Better Choices 2 (MBC2).Pellegrini, Christine A; Steglitz, Jeremy; Johnston, Winter; Warnick, Jennifer; Adams, Tiara; McFadden, H G; Siddique, Juned; Hedeker, Donald; Spring, BonnieContemporary clinical trials.2015 Mar;25625810
Investigating the genetics of hippocampal volume in older adults without dementia.Mather, Karen A; Armstrong, Nicola J; Wen, Wei; Kwok, John B; Assareh, Amelia A; Thalamuthu, Anbupalam; Reppermund, Simone; Duesing, Konsta; Wright, Margaret J; Ames, David; Trollor, Julian N; Brodaty, Henry; Schofield, Peter R; Sachdev, Perminder SPloS one.2015;25625606
Common genetic variants influence human subcortical brain structures.Hibar, Derrek P (see original citation for additional authors)Nature.2015 Apr 09;25607358
T-ReCS: stable selection of dynamically formed groups of features with application to prediction of clinical outcomes.Huang, Grace T; Tsamardinos, Ioannis; Raghu, Vineet; Kaminski, Naftali; Benos, Panayiotis VPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2015;25592602
Stepwise group sparse regression (SGSR): gene-set-based pharmacogenomic predictive models with stepwise selection of functional priors.Jang, In Sock; Dienstmann, Rodrigo; Margolin, Adam A; Guinney, JustinPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2015;25592566
CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations.Chikina, Maria; Zaslavsky, Elena; Sealfon, Stuart CBioinformatics (Oxford, England).2015 May 15;25583121
Multivariate General Linear Models (MGLM) on Riemannian Manifolds with Applications to Statistical Analysis of Diffusion Weighted Images.Kim, Hyunwoo J; Adluru, Nagesh; Collins, Maxwell D; Chung, Moo K; Bendlin, Barbara B; Johnson, Sterling C; Davidson, Richard J; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2014 Jun 23;25580070
Development of an online, publicly accessible naive Bayesian decision support tool for mammographic mass lesions based on the American College of Radiology (ACR) BI-RADS lexicon.Benndorf, Matthias; Kotter, Elmar; Langer, Mathias; Herda, Christoph; Wu, Yirong; Burnside, Elizabeth SEuropean radiology.2015 Jun;25576230
Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.Kim, Daniel H; Marinov, Georgi K; Pepke, Shirley; Singer, Zakary S; He, Peng; Williams, Brian; Schroth, Gary P; Elowitz, Michael B; Wold, Barbara JCell stem cell.2015 Jan 8;88-10125575081
Mechanisms and clinical consequences of untreated central sleep apnea in heart failure.Costanzo, Maria Rosa; Khayat, Rami; Ponikowski, Piotr; Augostini, Ralph; Stellbrink, Christoph; Mianulli, Marcus; Abraham, William TJournal of the American College of Cardiology.2015 Jan 06;25572513
Building a pan-genome reference for a population.Nguyen, Ngan; Hickey, Glenn; Zerbino, Daniel R; Raney, Brian; Earl, Dent; Armstrong, Joel; Kent, W James; Haussler, David; Paten, BenedictJournal of computational biology : a journal of computational molecular cell biology.2015 May;25565268
Abnormalities in cortical gray matter density in borderline personality disorder.Rossi, R; Lanfredi, M; Pievani, M; Boccardi, M; Rasser, P E; Thompson, P M; Cavedo, E; Cotelli, M; Rosini, S; Beneduce, R; Bignotti, S; Magni, L R; Rillosi, L; Magnaldi, S; Cobelli, M; Rossi, G; Frisoni, G BEuropean psychiatry : the journal of the Association of European Psychiatrists.2015 Feb;25561291
Impact of family structure and common environment on heritability estimation for neuroimaging genetics studies using Sequential Oligogenic Linkage Analysis Routines.Koran, Mary Ellen; Thornton-Wells, Tricia A; Jahanshad, Neda; Glahn, David C; Thompson, Paul M; Blangero, John; Nichols, Thomas E; Kochunov, Peter; Landman, Bennett AJournal of medical imaging (Bellingham, Wash.).2014 Jun 27;25558465
Low plasma ApoE levels are associated with smaller hippocampal size in the Alzheimer's disease neuroimaging initiative cohort.Teng, Edmond; Chow, Nicole; Hwang, Kristy S; Thompson, Paul M; Gylys, Karen H; Cole, Gregory M; Jack Jr, Clifford R; Shaw, Leslie M; Trojanowski, John Q; Soares, Holly D; Weiner, Michael W; Apostolova, Liana G; Alzheimer?s Disease Neuroimaging InitiativeDementia and geriatric cognitive disorders.2014 Dec 24;154-6625547651
Abnormal hippocampal morphology in dissociative identity disorder and post-traumatic stress disorder correlates with childhood trauma and dissociative symptoms.Chalavi, Sima; Vissia, Eline M; Giesen, Mechteld E; Nijenhuis, Ellert R S; Draijer, Nel; Cole, James H; Dazzan, Paola; Pariante, Carmine M; Madsen, Sarah K; Rajagopalan, Priya; Thompson, Paul M; Toga, Arthur W; Veltman, Dick J; Reinders, Antje A T SHuman brain mapping.2015 May;25545784
Stratifying patients at the risk of heart failure hospitalization using existing device diagnostic thresholds.Sharma, Vinod; Rathman, Lisa D; Small, Roy S; Whellan, David J; Koehler, Jodi; Warman, Eduardo; Abraham, William THeart & lung : the journal of critical care.2015 Mar-Apr;25543319
Heart failure and respiratory hospitalizations are reduced in patients with heart failure and chronic obstructive pulmonary disease with the use of an implantable pulmonary artery pressure monitoring device.Krahnke, Jason S; Abraham, William T; Adamson, Philip B; Bourge, Robert C; Bauman, Jordan; Ginn, Greg; Martinez, Fernando J; Criner, Gerard J; Champion Trial Study GroupJournal of cardiac failure.2015 Mar;25541376
Identifying Drug (Cocaine) Intake Events from Acute Physiological Response in the Presence of Free-living Physical Activity.Hossain, Syed Monowar; Ali, Amin Ahsan; Rahman, Mahbubur; Ertin, Emre; Epstein, David; Kennedy, Ashley; Preston, Kenzie; Umbricht, Annie; Chen, Yixin; Kumar, SantoshIPSN : [proceedings]. IPSN (Conference).2014;25531010
Genetics of microstructure of the corpus callosum in older adults.Kanchibhotla, Sri C; Mather, Karen A; Thalamuthu, Anbupalam; Zhuang, Lin; Schofield, Peter R; Kwok, John B J; Ames, David; Wright, Margaret J; Trollor, Julian N; Wen, Wei; Sachdev, Perminder SPloS one.2014;25514436
Carriers of a common variant in the dopamine transporter gene have greater dementia risk, cognitive decline, and faster ventricular expansion.Roussotte, Florence F; Gutman, Boris A; Hibar, Derrek P; Madsen, Sarah K; Narr, Katherine L; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI)Alzheimer's & dementia : the journal of the Alzheimer's Association.2015 Oct;25496873
Partial volume correction in quantitative amyloid imaging.Su, Yi; Blazey, Tyler M; Snyder, Abraham Z; Raichle, Marcus E; Marcus, Daniel S; Ances, Beau M; Bateman, Randall J; Cairns, Nigel J; Aldea, Patricia; Cash, Lisa; Christensen, Jon J; Friedrichsen, Karl; Hornbeck, Russ C; Farrar, Angela M; Owen, Christopher J; Mayeux, Richard; Brickman, Adam M; Klunk, William; Price, Julie C; Thompson, Paul M; Ghetti, Bernadino; Saykin, Andrew J; Sperling, Reisa A; Johnson, Keith A; Schofield, Peter R; Buckles, Virginia; Morris, John C; Benzinger, Tammie L S; Dominantly Inherited Alzheimer NetworkNeuroImage.2015 Feb 15;25485714
Effects of changing from non-accelerated to accelerated MRI for follow-up in brain atrophy measurement.Leung, Kelvin K; Malone, Ian M; Ourselin, Sebastien; Gunter, Jeffrey L; Bernstein, Matt A; Thompson, Paul M; Jack Jr, Clifford R; Weiner, Michael W; Fox, Nick C; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2015 Feb 15;46-5325481794
The effect of reverse remodeling on long-term survival in mildly symptomatic patients with heart failure receiving cardiac resynchronization therapy: results of the REVERSE study.Gold, Michael R; Daubert, Claude; Abraham, William T; Ghio, Stefano; St John Sutton, Martin; Hudnall, John Harrison; Cerkvenik, Jeffrey; Linde, CeciliaHeart rhythm.2015 Mar;25460860
Higher homocysteine associated with thinner cortical gray matter in 803 participants from the Alzheimer's Disease Neuroimaging Initiative.Madsen, Sarah K; Rajagopalan, Priya; Joshi, Shantanu H; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI)Neurobiology of aging.2015 Jan;S203-1025444607
Connectivity network measures predict volumetric atrophy in mild cognitive impairment.Nir, Talia M; Jahanshad, Neda; Toga, Arthur W; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI)Neurobiology of aging.2015 Jan;S113-2025444606
Does MRI scan acceleration affect power to track brain change?Ching, Christopher R K; Hua, Xue; Hibar, Derrek P; Ward, Chadwick P; Gunter, Jeffrey L; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeNeurobiology of aging.2015 Jan;S167-7725444601
Diffusion weighted imaging-based maximum density path analysis and classification of Alzheimer's disease.Nir, Talia M; Villalon-Reina, Julio E; Prasad, Gautam; Jahanshad, Neda; Joshi, Shantanu H; Toga, Arthur W; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI)Neurobiology of aging.2015 Jan;S132-4025444597
Occipital sources of resting-state alpha rhythms are related to local gray matter density in subjects with amnesic mild cognitive impairment and Alzheimer's disease.Babiloni, Claudio; Del Percio, Claudio; Boccardi, Marina; Lizio, Roberta; Lopez, Susanna; Carducci, Filippo; Marzano, Nicola; Soricelli, Andrea; Ferri, Raffaele; Triggiani, Antonio Ivano; Prestia, Annapaola; Salinari, Serenella; Rasser, Paul E; Basar, Erol; Famà, Francesco; Nobili, Flavio; Yener, Görsev; Emek-Sava?, Derya Durusu; Gesualdo, Loreto; Mundi, Ciro; Thompson, Paul M; Rossini, Paolo M; Frisoni, Giovanni BNeurobiology of aging.2015 Feb;25442118
The UCSC Genome Browser database: 2015 update.Rosenbloom, Kate R; Armstrong, Joel; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Dreszer, Timothy R; Fujita, Pauline A; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A; Heitner, Steve; Hickey, Glenn; Hinrichs, Angie S; Hubley, Robert; Karolchik, Donna; Learned, Katrina; Lee, Brian T; Li, Chin H; Miga, Karen H; Nguyen, Ngan; Paten, Benedict; Raney, Brian J; Smit, Arian F A; Speir, Matthew L; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W JamesNucleic acids research.2015 Jan;25428374
Comparative Effectiveness Research: A Roadmap for Physical Activity and Lifestyle.Jakicic, John M; Sox, Harold; Blair, Steven N; Bensink, Mark; Johnson, William G; King, Abby C; Lee, I-Min; Nahum-Shani, Inbal; Sallis, James F; Sallis, Robert E; Craft, Lynette; Whitehead, James R; Ainsworth, Barbara EMedicine and science in sports and exercise.2015 Aug;25426735
Altered white matter microstructure is associated with social cognition and psychotic symptoms in 22q11.2 microdeletion syndrome.Jalbrzikowski, Maria; Villalon-Reina, Julio E; Karlsgodt, Katherine H; Senturk, Damla; Chow, Carolyn; Thompson, Paul M; Bearden, Carrie EFrontiers in behavioral neuroscience.2014;25426042
Processing shotgun proteomics data on the Amazon cloud with the trans-proteomic pipeline.Slagel, Joseph; Mendoza, Luis; Shteynberg, David; Deutsch, Eric W; Moritz, Robert LMolecular & cellular proteomics : MCP.2015 Feb;25418363
Connectopathy in ageing and dementia.Toga, Arthur W; Thompson, Paul MBrain : a journal of neurology.2014 Dec;25413934
RADIA: RNA and DNA integrated analysis for somatic mutation detection.Radenbaugh, Amie J; Ma, Singer; Ewing, Adam; Stuart, Joshua M; Collisson, Eric A; Zhu, Jingchun; Haussler, DavidPloS one.2014;e11151625405470
Dynamic Treatment Regimes.Chakraborty, Bibhas; Murphy, Susan AAnnual review of statistics and its application.2014;25401119
A Comparison of Methamphetamine Users to a Matched NHANES Cohort: Propensity Score Analyses for Oral Health Care and Dental Service Need.Murphy, Debra A; Harrell, Lauren; Fintzy, Rachel; Belin, Thomas R; Gutierrez, Alexis; Vitero, Steven J; Shetty, VivekThe journal of behavioral health services & research.2016 Oct;25398257
The UCSC Cancer Genomics Browser: update 2015.Goldman, Mary; Craft, Brian; Swatloski, Teresa; Cline, Melissa; Morozova, Olena; Diekhans, Mark; Haussler, David; Zhu, JingchunNucleic acids research.2015 Jan;25392408
Associations between depression and anxiety symptoms and retinal vessel caliber in adolescents and young adults.Meier, Madeline H; Gillespie, Nathan A; Hansell, Narelle K; Hewitt, Alex W; Hickie, Ian B; Lu, Yi; MacGregor, Stuart; Medland, Sarah E; Sun, Cong; Wong, Tien Y; Wright, Margaret J; Zhu, Gu; Martin, Nicholas G; Mackey, David APsychosomatic medicine.2014 Nov-Dec;25373892
Thalamic alterations in preterm neonates and their relation to ventral striatum disturbances revealed by a combined shape and pose analysis.Lao, Yi; Wang, Yalin; Shi, Jie; Ceschin, Rafael; Nelson, Marvin D; Panigrahy, Ashok; Leporé, NatashaBrain structure & function.2016 Jan;25366970
Dynamic treatment regimes: technical challenges and applications.Laber, Eric B; Lizotte, Daniel J; Qian, Min; Pelham, William E; Murphy, Susan AElectronic journal of statistics.2014;25356091
Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.Benyamin, Beben; Esko, Tonu; Ried, Janina S; Radhakrishnan, Aparna; Vermeulen, Sita H; Traglia, Michela; Gögele, Martin; Anderson, Denise; Broer, Linda; Podmore, Clara; Luan, Jian'an; Kutalik, Zoltan; Sanna, Serena; van der Meer, Peter; Tanaka, Toshiko; Wang, Fudi; Westra, Harm-Jan; Franke, Lude; Mihailov, Evelin; Milani, Lili; Hälldin, Jonas; Häldin, Jonas; Winkelmann, Juliane; Meitinger, Thomas; Thiery, Joachim; Peters, Annette; Waldenberger, Melanie; Rendon, Augusto; Jolley, Jennifer; Sambrook, Jennifer; Kiemeney, Lambertus A; Sweep, Fred C; Sala, Cinzia F; Schwienbacher, Christine; Pichler, Irene; Hui, Jennie; Demirkan, Ayse; Isaacs, Aaron; Amin, Najaf; Steri, Maristella; Waeber, Gérard; Verweij, Niek; Powell, Joseph E; Nyholt, Dale R; Heath, Andrew C; Madden, Pamela A F; Visscher, Peter M; Wright, Margaret J; Montgomery, Grant W; Martin, Nicholas G; Hernandez, Dena; Bandinelli, Stefania; van der Harst, Pim; Uda, Manuela; Vollenweider, Peter; Scott, Robert A; Langenberg, Claudia; Wareham, Nicholas J; InterAct Consortium; van Duijn, Cornelia; Beilby, John; Pramstaller, Peter P; Hicks, Andrew A; Ouwehand, Willem H; Oexle, Konrad; Gieger, Christian; Metspalu, Andres; Camaschella, Clara; Toniolo, Daniela; Swinkels, Dorine W; Whitfield, John BNature communications.2014 Oct 29;25352340
Navigating protected genomics data with UCSC Genome Browser in a Box.Haeussler, Maximilian; Raney, Brian J; Hinrichs, Angie S; Clawson, Hiram; Zweig, Ann S; Karolchik, Donna; Casper, Jonathan; Speir, Matthew L; Haussler, David; Kent, W JamesBioinformatics (Oxford, England).2015 Mar 01;25348212
Pleiotropic locus for emotion recognition and amygdala volume identified using univariate and bivariate linkage.Knowles, Emma E M; McKay, D Reese; Kent Jr, Jack W; Sprooten, Emma; Carless, Melanie A; Curran, Joanne E; de Almeida, Marcio A A; Dyer, Thomas D; Göring, Harald H H; Olvera, Rene L; Duggirala, Ravi; Fox, Peter T; Almasy, Laura; Blangero, John; Glahn, David CThe American journal of psychiatry.2015 Feb 1;25322361
Toward better benchmarking: challenge-based methods assessment in cancer genomics.Boutros, Paul C; Margolin, Adam A; Stuart, Joshua M; Califano, Andrea; Stolovitzky, GustavoGenome biology.2014 Sep 17;25314947
Mapping ventricular expansion onto cortical gray matter in older adults.Madsen, Sarah K; Gutman, Boris A; Joshi, Shantanu H; Toga, Arthur W; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI)Neurobiology of aging.2015 Jan;S32-4125311280
Structural abnormality of the corticospinal tract in major depressive disorder.Sacchet, Matthew D; Prasad, Gautam; Foland-Ross, Lara C; Joshi, Shantanu H; Hamilton, J Paul; Thompson, Paul M; Gotlib, Ian HBiology of mood & anxiety disorders.2014;25295159
Simulation studies as designed experiments: the comparison of penalized regression models in the ''large p, small n'' setting.Chaibub Neto, Elias; Bare, J Christopher; Margolin, Adam APloS one.2014;25289666
A randomized controlled trial to evaluate the safety and efficacy of cardiac contractility modulation in patients with moderately reduced left ventricular ejection fraction and a narrow QRS duration: study rationale and design.Abraham, William T; Lindenfeld, JoAnn; Reddy, Vivek Y; Hasenfuss, Gerd; Kuck, Karl-Heinz; Boscardin, John; Gibbons, Robert; Burkhoff, Daniel; FIX-HF-5C Investigators and CoordinatorsJournal of cardiac failure.2015 Jan;25285748
Studying ventricular abnormalities in mild cognitive impairment with hyperbolic Ricci flow and tensor-based morphometry.Shi, Jie; Stonnington, Cynthia M; Thompson, Paul M; Chen, Kewei; Gutman, Boris; Reschke, Cole; Baxter, Leslie C; Reiman, Eric M; Caselli, Richard J; Wang, Yalin; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2015 Jan 01;25285374
Joint genetic analysis of hippocampal size in mouse and human identifies a novel gene linked to neurodegenerative disease.Ashbrook, David G; Williams, Robert W; Lu, Lu; Stein, Jason L; Hibar, Derrek P; Nichols, Thomas E; Medland, Sarah E; Thompson, Paul M; Hager, ReinmarBMC genomics.2014 Oct 03;25280473
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.Jacobs, Frank M J; Greenberg, David; Nguyen, Ngan; Haeussler, Maximilian; Ewing, Adam D; Katzman, Sol; Paten, Benedict; Salama, Sofie R; Haussler, DavidNature.2014 Dec 11;25274305
Alignathon: a competitive assessment of whole-genome alignment methods.Earl, Dent; Nguyen, Ngan; Hickey, Glenn; Harris, Robert S; Fitzgerald, Stephen; Beal, Kathryn; Seledtsov, Igor; Molodtsov, Vladimir; Raney, Brian J; Clawson, Hiram; Kim, Jaebum; Kemena, Carsten; Chang, Jia-Ming; Erb, Ionas; Poliakov, Alexander; Hou, Minmei; Herrero, Javier; Kent, William James; Solovyev, Victor; Darling, Aaron E; Ma, Jian; Notredame, Cedric; Brudno, Michael; Dubchak, Inna; Haussler, David; Paten, BenedictGenome research.2014 Dec;25273068
The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data.Wilks, Christopher; Cline, Melissa S; Weiler, Erich; Diehkans, Mark; Craft, Brian; Martin, Christy; Murphy, Daniel; Pierce, Howdy; Black, John; Nelson, Donavan; Litzinger, Brian; Hatton, Thomas; Maltbie, Lori; Ainsworth, Michael; Allen, Patrick; Rosewood, Linda; Mitchell, Elizabeth; Smith, Bradley; Warner, Jim; Groboske, John; Telc, Haifang; Wilson, Daniel; Sanford, Brian; Schmidt, Hannes; Haussler, David; Maltbie, DanielDatabase : the journal of biological databases and curation.2014;25267794
Introduction to SMART designs for the development of adaptive interventions: with application to weight loss research.Almirall, Daniel; Nahum-Shani, Inbal; Sherwood, Nancy E; Murphy, Susan ATranslational behavioral medicine.2014 Sep;25264466
Brain connectivity and novel network measures for Alzheimer's disease classification.Prasad, Gautam; Joshi, Shantanu H; Nir, Talia M; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI)Neurobiology of aging.2015 Jan;S121-3125264345
Genome-wide interaction analysis reveals replicated epistatic effects on brain structure.Hibar, Derrek P; Stein, Jason L; Jahanshad, Neda; Kohannim, Omid; Hua, Xue; Toga, Arthur W; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Wright, Margaret J; Alzheimer's Disease Neuroimaging Initiative; Weiner, Michael W; Thompson, Paul MNeurobiology of aging.2015 Jan;S151-825264344
Empowering imaging biomarkers of Alzheimer's disease.Gutman, Boris A; Wang, Yalin; Yanovsky, Igor; Hua, Xue; Toga, Arthur W; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeNeurobiology of aging.2015 Jan;S69-8025260848
Seemingly unrelated regression empowers detection of network failure in dementia.Jahanshad, Neda; Nir, Talia M; Toga, Arthur W; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeNeurobiology of aging.2015 Jan;S103-1225257986
Physical activity, body mass index, and brain atrophy in Alzheimer's disease.Boyle, Christina P; Raji, Cyrus A; Erickson, Kirk I; Lopez, Oscar L; Becker, James T; Gach, H Michael; Longstreth Jr, W T; Teverovskiy, Leonid; Kuller, Lewis H; Carmichael, Owen T; Thompson, Paul MNeurobiology of aging.2015 Jan;25248607
Designing adaptive intensive interventions using methods from engineering.Lagoa, Constantino M; Bekiroglu, Korkut; Lanza, Stephanie T; Murphy, Susan AJournal of consulting and clinical psychology.2014 Oct;25244394
Relationship between Systemic and Cerebral Vascular Disease and Brain Structure Integrity in Normal Elderly Individuals.Riverol, Mario; Becker, James T; López, Oscar L; Raji, Cyrus A; Thompson, Paul M; Carmichael, Owen T; Gach, H Michael; Longstreth Jr, William T; Fried, Linda; Tracy, Russell P; Kuller, Lewis HJournal of Alzheimer's disease : JAD.2015;25213770
Genetic architecture of subcortical brain regions: common and region-specific genetic contributions.Rentería, M E; Hansell, N K; Strike, L T; McMahon, K L; de Zubicaray, G I; Hickie, I B; Thompson, P M; Martin, N G; Medland, S E; Wright, M JGenes, brain, and behavior.2014 Nov;25199620
Sparse kernel machine regression for ordinal outcomes.Shen, Yuanyuan; Liao, Katherine P; Cai, TianxiBiometrics.2015 Mar;25196727
Heritability of head motion during resting state functional MRI in 462 healthy twins.Couvy-Duchesne, Baptiste; Blokland, Gabriëlla A M; Hickie, Ian B; Thompson, Paul M; Martin, Nicholas G; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margaret JNeuroImage.2014 Nov 15;25132021
Skull-stripping with machine learning deformable organisms.Prasad, Gautam; Joshi, Anand A; Feng, Albert; Toga, Arthur W; Thompson, Paul M; Terzopoulos, DemetriJournal of neuroscience methods.2014 Oct 30;25124851
Regular fish consumption and age-related brain gray matter loss.Raji, Cyrus A; Erickson, Kirk I; Lopez, Oscar L; Kuller, Lewis H; Gach, H Michael; Thompson, Paul M; Riverol, Mario; Becker, James TAmerican journal of preventive medicine.2014 Oct;25084680
Shared genetic factors influence amygdala volumes and risk for alcoholism.Dager, Alecia D; McKay, D Reese; Kent Jr, Jack W; Curran, Joanne E; Knowles, Emma; Sprooten, Emma; Göring, Harald H H; Dyer, Thomas D; Pearlson, Godfrey D; Olvera, Rene L; Fox, Peter T; Lovallo, William R; Duggirala, Ravi; Almasy, Laura; Blangero, John; Glahn, David CNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.2015 Jan;25079289
Obesity gene NEGR1 associated with white matter integrity in healthy young adults.Dennis, Emily L; Jahanshad, Neda; Braskie, Meredith N; Warstadt, Nicholus M; Hibar, Derrek P; Kohannim, Omid; Nir, Talia M; McMahon, Katie L; de Zubicaray, Greig I; Montgomery, Grant W; Martin, Nicholas G; Toga, Arthur W; Wright, Margaret J; Thompson, Paul MNeuroImage.2014 Nov 15;25072390
Functional connectivity in autosomal dominant and late-onset Alzheimer disease.Thomas, Jewell B; Brier, Matthew R; Bateman, Randall J; Snyder, Abraham Z; Benzinger, Tammie L; Xiong, Chengjie; Raichle, Marcus; Holtzman, David M; Sperling, Reisa A; Mayeux, Richard; Ghetti, Bernardino; Ringman, John M; Salloway, Stephen; McDade, Eric; Rossor, Martin N; Ourselin, Sebastien; Schofield, Peter R; Masters, Colin L; Martins, Ralph N; Weiner, Michael W; Thompson, Paul M; Fox, Nick C; Koeppe, Robert A; Jack Jr, Clifford R; Mathis, Chester A; Oliver, Angela; Blazey, Tyler M; Moulder, Krista; Buckles, Virginia; Hornbeck, Russ; Chhatwal, Jasmeer; Schultz, Aaron P; Goate, Alison M; Fagan, Anne M; Cairns, Nigel J; Marcus, Daniel S; Morris, John C; Ances, Beau MJAMA neurology.2014 Sep;1111-2225069482
Progressive reduction in cortical thickness as psychosis develops: a multisite longitudinal neuroimaging study of youth at elevated clinical risk.Cannon, Tyrone D; Chung, Yoonho; He, George; Sun, Daqiang; Jacobson, Aron; van Erp, Theo G M; McEwen, Sarah; Addington, Jean; Bearden, Carrie E; Cadenhead, Kristin; Cornblatt, Barbara; Mathalon, Daniel H; McGlashan, Thomas; Perkins, Diana; Jeffries, Clark; Seidman, Larry J; Tsuang, Ming; Walker, Elaine; Woods, Scott W; Heinssen, Robert; North American Prodrome Longitudinal Study ConsortiumBiological psychiatry.2015 Jan 15;25034946
Mediodorsal and visual thalamic connectivity differ in schizophrenia and bipolar disorder with and without psychosis history.Anticevic, Alan; Yang, Genevieve; Savic, Aleksandar; Murray, John D; Cole, Michael W; Repovs, Grega; Pearlson, Godfrey D; Glahn, David CSchizophrenia bulletin.2014 Nov;25031221
Serum cholesterol and variant in cholesterol-related gene CETP predict white matter microstructure.Warstadt, Nicholus M; Dennis, Emily L; Jahanshad, Neda; Kohannim, Omid; Nir, Talia M; McMahon, Katie L; de Zubicaray, Greig I; Montgomery, Grant W; Henders, Anjali K; Martin, Nicholas G; Whitfield, John B; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, MNeurobiology of aging2014 Jun 2NULL24997672
Healthy lifestyle change and subclinical atherosclerosis in young adults: Coronary Artery Risk Development in Young Adults (CARDIA) study.Spring, Bonnie; Moller, Arlen C; Colangelo, Laura A; Siddique, Juned; Roehrig, Megan; Daviglus, Martha L; Polak, Joseph F; Reis, Jared P; Sidney, Stephen; Liu, KiangCirculation.2014 Jul 01;24982115
Investigating brain connectivity heritability in a twin study using diffusion imaging data.Shen, Kai-Kai; Rose, Stephen; Fripp, Jurgen; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Thompson, Paul M; Wright, Margaret J; Salvado, OlivierNeuroImage.2014 Oct 15;24973604
A multiple imputation strategy for sequential multiple assignment randomized trials.Shortreed, Susan M; Laber, Eric; Scott Stroup, T; Pineau, Joelle; Murphy, Susan AStatistics in medicine.2014 Oct 30;24919867
Neural dysregulation during a working memory task in human immunodeficiency virus-seropositive and hepatitis C coinfected individuals.Caldwell, J Z K; Gongvatana, A; Navia, B A; Sweet, L H; Tashima, K; Ding, M; Cohen, R AJournal of neurovirology.2014 Aug;24867610
Whole-genome analyses of whole-brain data: working within an expanded search space.Medland, Sarah E; Jahanshad, Neda; Neale, Benjamin M; Thompson, Paul MNature neuroscience2014 Jun791-80024866045
Optimization of remotely delivered intensive lifestyle treatment for obesity using the Multiphase Optimization Strategy: Opt-IN study protocol.Pellegrini, Christine A; Hoffman, Sara A; Collins, Linda M; Spring, BonnieContemporary clinical trials.2014 Jul;24846621
Left atrial decompression through unidirectional left-to-right interatrial shunt for the treatment of left heart failure: first-in-man experience with the V-Wave device.Amat-Santos, Ignacio J; Bergeron, Sebastien; Bernier, Mathieu; Allende, Ricardo; Barbosa Ribeiro, Henrique; Urena, Marina; Pibarot, Philippe; Verheye, Stefan; Keren, Gad; Yaacoby, Menashe; Nitzan, Yaacov; Abraham, William T; Rodés-Cabau, JosepEuroIntervention : journal of EuroPCR in collaboration with the Working Group on Interventional Cardiology of the European Society of Cardiology.2015 Jan;24832489
Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics.Jin, Yan; Shi, Yonggang; Zhan, Liang; Gutman, Boris A; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margaret J; Toga, Arthur W; Thompson, Paul MNeuroImage.2014 Oct 15;24821529
Relationship between salivary cortisol and depression in adolescent survivors of a major natural disaster.Yonekura, Takashi; Takeda, Kazunori; Shetty, Vivek; Yamaguchi, MasakiThe journal of physiological sciences : JPS.2014 Jul;24744089
Medial temporal atrophy in early and late-onset Alzheimer's disease.Cavedo, Enrica; Pievani, Michela; Boccardi, Marina; Galluzzi, Samantha; Bocchetta, Martina; Bonetti, Matteo; Thompson, Paul M; Frisoni, Giovanni BNeurobiology of aging.2014 Sep;24721821
A latent class analysis of cancer risk behaviors among U.S. college students.Kang, Joseph; Ciecierski, Christina Czart; Malin, Emily L; Carroll, Allison J; Gidea, Marian; Craft, Lynette L; Spring, Bonnie; Hitsman, BrianPreventive medicine.2014 Jul;24704131
Predictors of CNS injury as measured by proton magnetic resonance spectroscopy in the setting of chronic HIV infection and CART.Harezlak, J; Cohen, R; Gongvatana, A; Taylor, M; Buchthal, S; Schifitto, G; Zhong, J; Daar, E S; Alger, J R; Brown, M; Singer, E J; Campbell, T B; McMahon, D; So, Y T; Yiannoutsos, C T; Navia, B A; HIV Neuroimaging ConsortiumJournal of neurovirology.2014 Jun;24696364
Neuroanatomical correlates of emotional blunting in behavioral variant frontotemporal dementia and early-onset Alzheimer's disease.Lee, Grace J; Lu, Po H; Mather, Michelle J; Shapira, Jill; Jimenez, Elvira; Leow, Alex D; Thompson, Paul M; Mendez, Mario FJournal of Alzheimer's disease : JAD.2014;24685626
Verbal memory declines more rapidly with age in HIV infected versus uninfected adults.Seider, Talia R; Luo, Xi; Gongvatana, Assawin; Devlin, Kathryn N; de la Monte, Suzanne M; Chasman, Jesse D; Yan, Peisi; Tashima, Karen T; Navia, Bradford; Cohen, Ronald AJournal of clinical and experimental neuropsychology.2014;24645772
Visual hallucinations are associated with hyperconnectivity between the amygdala and visual cortex in people with a diagnosis of schizophrenia.Ford, Judith M; Palzes, Vanessa A; Roach, Brian J; Potkin, Steven G; van Erp, Theo G M; Turner, Jessica A; Mueller, Bryon A; Calhoun, Vincent D; Voyvodic, Jim; Belger, Aysenil; Bustillo, Juan; Vaidya, Jatin G; Preda, Adrian; McEwen, Sarah C; Functional Imaging Biomedical Informatics Research Network; Mathalon, Daniel HSchizophrenia bulletin.2015 Jan;24619536
Hippocampal and amygdalar local structural differences in elderly patients with schizophrenia.Prestia, Annapaola; Cavedo, Enrica; Boccardi, Marina; Muscio, Cristina; Adorni, Andrea; Geroldi, Cristina; Bonetti, Matteo; Thompson, Paul M; Frisoni, Giovanni BThe American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry.2015 Jan;24534522
Single nucleotide polymorphism in the neuroplastin locus associates with cortical thickness and intellectual ability in adolescents.Desrivières, S; Lourdusamy, A; Tao, C; Toro, R; Jia, T; Loth, E; Medina, L M; Kepa, A; Fernandes, A; Ruggeri, B; Carvalho, F M; Cocks, G; Banaschewski, T; Barker, G J; Bokde, A L W; Büchel, C; Conrod, P J; Flor, H; Heinz, A; Gallinat, J; Garavan, H; Gowland, P; Brühl, R; Lawrence, C; Mann, K; Martinot, M L P; Nees, F; Lathrop, M; Poline, J-B; Rietschel, M; Thompson, P; Fauth-Bühler, M; Smolka, M N; Pausova, Z; Paus, T; Feng, J; Schumann, G; IMAGEN ConsortiumMolecular psychiatry.2015 Feb;24514566
A group-mediated, home-based physical activity intervention for patients with peripheral artery disease: effects on social and psychological function.Rejeski, W Jack; Spring, Bonnie; Domanchuk, Kathryn; Tao, Huimin; Tian, Lu; Zhao, Lihui; McDermott, Mary MJournal of translational medicine.2014 Jan 28;24467875
The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain imaging and behavior2014 Jun153-8224399358
Altered relationships between age and functional brain activation in adolescents at clinical high risk for psychosis.Karlsgodt, Katherine H; van Erp, Theo G M; Bearden, Carrie E; Cannon, Tyrone DPsychiatry research.2014 Jan 30;24144510
Psychophysiological responses to stress following alcohol intake in social drinkers who are at risk of hazardous drinking.Nakajima, Motohiro; Kumar, Santosh; Wittmers, Lorentz; Scott, Marcia S; al'Absi, MustafaBiological psychology.2013 Apr;23313460