Big Data to Knowledge (1927)
Publication TitleAuthorsJournalPublication DatePage NoPubMedID
IntelligentPooling: Practical Thompson Sampling for mHealth.Tomkins, Sabina; Liao, Peng; Klasnja, Predrag; Murphy, SusanMachine learning2021 Sep34621105
Cortical and subcortical brain structure in generalized anxiety disorder: findings from 28 research sites in the ENIGMA-Anxiety Working Group.Harrewijn, Anita; Cardinale, Elise M; Groenewold, Nynke A; Bas-Hoogendam, Janna Marie; Aghajani, Moji; Hilbert, Kevin; Cardoner, Narcis; Porta-Casteràs, Daniel; Gosnell, Savannah; Salas, Ramiro; Jackowski, Andrea P; Pan, Pedro M; Salum, Giovanni A; Blair, Karina S; Blair, James R; Hammoud, Mira Z; Milad, Mohammed R; Burkhouse, Katie L; Phan, K Luan; Schroeder, Heidi K; Strawn, Jeffrey R; Beesdo-Baum, Katja; Jahanshad, Neda; Thomopoulos, Sophia I; Buckner, Randy; Nielsen, Jared A; Smoller, Jordan W; Soares, Jair C; Mwangi, Benson; Wu, Mon-Ju; Zunta-Soares, Giovana B; Assaf, Michal; Diefenbach, Gretchen J; Brambilla, Paolo; Maggioni, Eleonora; Hofmann, David; Straube, Thomas; Andreescu, Carmen; Berta, Rachel; Tamburo, Erica; Price, Rebecca B; Manfro, Gisele G; Agosta, Federica; Canu, Elisa; Cividini, Camilla; Filippi, Massimo; Kostić, Milutin; Munjiza Jovanovic, Ana; Alberton, Bianca A V; Benson, Brenda; Freitag, Gabrielle F; Filippi, Courtney A; Gold, Andrea L; Leibenluft, Ellen; Ringlein, Grace V; Werwath, Kathryn E; Zwiebel, Hannah; Zugman, André; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Völzke, Henry; Bülow, Robin; Balderston, Nicholas L; Ernst, Monique; Grillon, Christian; Mujica-Parodi, Lilianne R; van Nieuwenhuizen, Helena; Critchley, Hugo D; Makovac, Elena; Mancini, Matteo; Meeten, Frances; Ottaviani, Cristina; Ball, Tali M; Fonzo, Gregory A; Paulus, Martin P; Stein, Murray B; Gur, Raquel E; Gur, Ruben C; Kaczkurkin, Antonia N; Larsen, Bart; Satterthwaite, Theodore D; Harper, Jennifer; Myers, Michael; Perino, Michael T; Sylvester, Chad M; Yu, Qiongru; Lueken, Ulrike; Veltman, Dick J; Thompson, Paul M; Stein, Dan J; Van der Wee, Nic J A; Winkler, Anderson M; Pine, Daniel STranslational psychiatry2021 10 0134599145
Personalized HeartSteps: A Reinforcement Learning Algorithm for Optimizing Physical Activity.Liao, Peng; Greenewald, Kristjan; Klasnja, Predrag; Murphy, SusanProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies2020 Mar34527853
Rare variants in the endocytic pathway are associated with Alzheimer's disease, its related phenotypes, and functional consequences.Zhan, Lingyu; Li, Jiajin; Jew, Brandon; Sul, Jae HoonPLoS genetics2021 Sep34516545
Physarum Powered Differentiable Linear Programming Layers and Applications.Meng, Zihang; Ravi, Sathya N; Singh, VikasProceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence2021 Feb34484857
Signaligner Pro: A Tool to Explore and Annotate Multi-day Raw Accelerometer Data.Ponnada, Aditya; Cooper, Seth; Tang, Qu; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, StephenProceedings of the ... IEEE International Conference on Pervasive Computing and Communications. IEEE International Conference on Pervasive Computing and Communications2021 Mar34458663
CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping.Wen, Andrew; Rasmussen, Luke V; Stone, Daniel; Liu, Sijia; Kiefer, Rick; Adekkanattu, Prakash; Brandt, Pascal S; Pacheco, Jennifer A; Luo, Yuan; Wang, Fei; Pathak, Jyotishman; Liu, Hongfang; Jiang, GuoqianAMIA ... Annual Symposium proceedings. AMIA Symposium202134457178
Integration of NLP2FHIR Representation with Deep Learning Models for EHR Phenotyping: A Pilot Study on Obesity Datasets.Liu, Sijia; Luo, Yuan; Stone, Daniel; Zong, Nansu; Wen, Andrew; Yu, Yue; Rasmussen, Luke V; Wang, Fei; Pathak, Jyotishman; Liu, Hongfang; Jiang, GuoqianAMIA ... Annual Symposium proceedings. AMIA Symposium202134457156
Self-reported oil spill exposure and birth outcomes among southern Louisiana women at the time of the Gulf oil spill: The GROWH study.Harville, Emily W; Shankar, Arti; Buekens, Pierre; Wickliffe, Jeffrey K; Lichtveld, Maureen YInternational journal of hygiene and environmental health2021 Aug34450543
INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants.Dong, Chenyang; Simonett, Shane P; Shin, Sunyoung; Stapleton, Donnie S; Schueler, Kathryn L; Churchill, Gary A; Lu, Leina; Liu, Xiaoxiao; Jin, Fulai; Li, Yan; Attie, Alan D; Keller, Mark P; Keleş, SündüzGenome biology2021 08 2334425882
Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis.Aygün, Nil; Elwell, Angela L; Liang, Dan; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Mory, Jessica; Hadden-Ford, Ellie; Krupa, Oleh; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Love, Michael I; Stein, Jason LAmerican journal of human genetics2021 09 0234416157
Deep reinforcement learning for modeling human locomotion control in neuromechanical simulation.Song, Seungmoon; Kidziński, Łukasz; Peng, Xue Bin; Ong, Carmichael; Hicks, Jennifer; Levine, Sergey; Atkeson, Christopher G; Delp, Scott LJournal of neuroengineering and rehabilitation2021 08 1634399772
Testing the effectiveness of community-engaged citizen science to promote physical activity, foster healthier neighborhood environments, and advance health equity in vulnerable communities: The Steps for Change randomized controlled trial design and methoKing, Abby C; Campero, Maria I; Garcia, Dulce; Blanco-Velazquez, Isela; Banchoff, Ann; Fierros, Fernando; Escobar, Michele; Cortes, Ana L; Sheats, Jylana L; Hua, Jenna; Chazaro, Aldo; Done, Monica; Espinosa, Patricia Rodriguez; Vuong, Daniel; Ahn, David KContemporary clinical trials2021 Sep34371162
Inferring and Comparing Game Difficulty Curves using Player-vs-Level Match Data.Sarkar, Anurag; Cooper, SethIEEE Conference on Games 2019 : London, United Kingdom, 20-23 August 20192019 Aug34355222
Artificial intelligence for classification of temporal lobe epilepsy with ROI-level MRI data: A worldwide ENIGMA-Epilepsy study.Gleichgerrcht, Ezequiel; Munsell, Brent C; Alhusaini, Saud; Alvim, Marina K M; Bargalló, Núria; Bender, Benjamin; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris; Blackmon, Karen; Caligiuri, Maria Eugenia; Cendes, Fernando; Concha, Luis; Desmond, Patricia M; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Duncan, John S; Focke, Niels K; Gambardella, Antonio; Gong, Bo; Guerrini, Renzo; Hatton, Sean N; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kotikalapudi, Raviteja; Kreilkamp, Barbara A K; Labate, Angelo; Langner, Soenke; Larivière, Sara; Lenge, Matteo; Lui, Elaine; Martin, Pascal; Mascalchi, Mario; Meletti, Stefano; O'Brien, Terence J; Pardoe, Heath R; Pariente, Jose C; Xian Rao, Jun; Richardson, Mark P; Rodríguez-Cruces, Raúl; Rüber, Theodor; Sinclair, Ben; Soltanian-Zadeh, Hamid; Stein, Dan J; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Elisabetta Vaudano, Anna; Vivash, Lucy; von Podewills, Felix; Vos, Sjoerd B; Weber, Bernd; Yao, Yi; Lin Yasuda, Clarissa; Zhang, Junsong; Thompson, Paul M; Sisodiya, Sanjay M; McDonald, Carrie R; Bonilha, Leonardo; ENIGMA-Epilepsy Working GroupNeuroImage. Clinical202134339947
Indirectly-Supervised Anomaly Detection of Clinically-Meaningful Health Events from Smart Home Data.Dahmen, Jessamyn; Cook, Diane JACM transactions on intelligent systems and technology2021 Mar34336375
A Survey of Unsupervised Deep Domain Adaptation.Wilson, Garrett; Cook, Diane JACM transactions on intelligent systems and technology2020 Sep34336374
Effects of eight neuropsychiatric copy number variants on human brain structure.Modenato, Claudia; Kumar, Kuldeep; Moreau, Clara; Martin-Brevet, Sandra; Huguet, Guillaume; Schramm, Catherine; Jean-Louis, Martineau; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Douard, Elise; Thébault-Dagher, Fanny; Côté, Valérie; Charlebois, Audrey-Rose; Deguire, Florence; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurèlie; Richetin, Sonia; 16p11.2 European Consortium; Simons Searchlight Consortium; Melie-Garcia, Lester; Kushan, Leila; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Chakravarty, Mallar; Bzdok, Danilo; Bearden, Carrie E; Draganski, Bogdan; Jacquemont, SébastienTranslational psychiatry2021 07 2034285187
Sensing leg movement enhances wearable monitoring of energy expenditure.Slade, Patrick; Kochenderfer, Mykel J; Delp, Scott L; Collins, Steven HNature communications2021 07 1334257310
Haplotype-based membership inference from summary genomic data.Bu, Diyue; Wang, Xiaofeng; Tang, HaixuBioinformatics (Oxford, England)2021 07 1234252973
Published anti-SARS-CoV-2 in vitro hits share common mechanisms of action that synergize with antivirals.Xing, Jing; Paithankar, Shreya; Liu, Ke; Uhl, Katie; Li, Xiaopeng; Ko, Meehyun; Kim, Seungtaek; Haskins, Jeremy; Chen, BinBriefings in bioinformatics2021 Jul 0934245241
Standardization of assay representation in the Ontology for Biomedical Investigations.Vita, Randi; Zheng, Jie; Jackson, Rebecca; Dooley, Damion; Overton, James A; Miller, Mark A; Berrios, Daniel C; Scheuermann, Richard H; He, Yongqun; McGinty, Hande Küçük; Brochhausen, Mathias; Lin, Aisyah Yu; Jain, Sagar B; Chibucos, Marcus C; Judkins, John; Giglio, Michelle G; Feng, Irene Y; Burns, Gully; Brush, Matthew H; Peters, Bjoern; Stoeckert Jr, Christian JDatabase : the journal of biological databases and curation2021 07 0934244718
Quick-start infrastructure for untargeted metabolomics analysis in GNPS.Leao, Tiago F; Clark, Chase M; Bauermeister, Anelize; Elijah, Emmanuel O; Gentry, Emily C; Husband, Makhai; Oliveira, Michelli F; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter CNature metabolism2021 0734244695
Causal Inference Gates Corticostriatal Learning.Dorfman, Hayley M; Tomov, Momchil S; Cheung, Bernice; Clarke, Dennis; Gershman, Samuel J; Hughes, Brent LThe Journal of neuroscience : the official journal of the Society for Neuroscience2021 Aug 1134244363
Regulations and Norms for Reuse of Residual Clinical Biospecimens and Health Data.Umberfield, Elizabeth E; Kardia, Sharon L R; Jiang, Yun; Thomer, Andrea K; Harris, Marcelline RWestern journal of nursing research2021 Jul 0834238076
A critical overview of computational approaches employed for COVID-19 drug discovery.Muratov , Eugene N; Amaro , Rommie; Andrade , Carolina H; Brown , Nathan; Ekins , Sean; Fourches , Denis; Isayev , Olexandr; Kozakov , Dima; Medina-Franco , José L; Merz , Kenneth M; Oprea , Tudor I; Poroikov , Vladimir; Schneider , Gisbert; Todd , Matthew H; Varnek , Alexandre; Winkler , David A; Zakharov , Alexey V; Cherkasov , Artem; Tropsha , AlexanderChemical Society reviews2021 Aug 2134212944
The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets.Larivière, Sara; Paquola, Casey; Park, Bo-Yong; Royer, Jessica; Wang, Yezhou; Benkarim, Oualid; Vos de Wael, Reinder; Valk, Sofie L; Thomopoulos, Sophia I; Kirschner, Matthias; Lewis, Lindsay B; Evans, Alan C; Sisodiya, Sanjay M; McDonald, Carrie R; Thompson, Paul M; Bernhardt, Boris CNature methods2021 Jul34194050
Universal Spectrum Identifier for mass spectra.Deutsch, Eric W; Perez-Riverol, Yasset; Carver, Jeremy; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Binz, Pierre-Alain; Pullman, Benjamin; Sun, Zhi; Shofstahl, Jim; Bittremieux, Wout; Mak, Tytus D; Klein, Joshua; Zhu, Yunping; Lam, Henry; Vizcaíno, Juan Antonio; Bandeira, NunoNature methods2021 Jul34183830
Brain Correlates of Suicide Attempt in 18,925 Participants Across 18 International Cohorts.Campos, Adrian I; Thompson, Paul M; Veltman, Dick J; Pozzi, Elena; van Veltzen, Laura S; Jahanshad, Neda; Adams, Mark J; Baune, Bernhard T; Berger, Klaus; Brosch, Katharina; Bülow, Robin; Connolly, Colm G; Dannlowski, Udo; Davey, Christopher G; de Zubicaray, Greig I; Dima, Danai; Erwin-Grabner, Tracy; Evans, Jennifer W; Fu, Cynthia H Y; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans J; Grotegerd, Dominik; Harris, Matthew A; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Ho, Tiffany C; Kircher, Tilo; Krug, Axel; Lagopoulos, Jim; Lemke, Hannah; McMahon, Katie; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; Medland, Sarah E; Meinert, Susanne; Meller, Tina; Nenadic, Igor; Opel, Nils; Redlich, Ronny; Reneman, Liesbeth; Repple, Jonathan; Sacchet, Matthew D; Schmitt, Simon; Schrantee, Anouk; Sim, Kang; Singh, Aditya; Stein, Frederike; Strike, Lachlan T; van der Wee, Nic J A; van der Werff, Steven J A; Völzke, Henry; Waltemate, Lena; Whalley, Heather C; Wittfeld, Katharina; Wright, Margaret J; Yang, Tony T; Zarate, Carlos A; Schmaal, Lianne; Rentería, Miguel E; ENIGMA-MDD Working GroupBiological psychiatry2021 08 1534172278
ReVibe: A Context-assisted Evening Recall Approach to Improve Self-report Adherence.Rabbi, Mashfiqui; Li, Katherine; Yan, H Yanna; Hall, Kelly; Klasnja, Predrag; Murphy, SusanProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies2019 Dec34164595
Lessons Learned for Identifying and Annotating Permissions in Clinical Consent Forms.Umberfield, Elizabeth E; Jiang, Yun; Fenton, Susan H; Stansbury, Cooper; Ford, Kathleen; Crist, Kaycee; Kardia, Sharon L R; Thomer, Andrea K; Harris, Marcelline RApplied clinical informatics2021 0534161986
Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses.Moon, Changsung; Jin, Chunming; Dong, Xialan; Abrar, Saad; Zheng, Weifan; Chirkova, Rada Y; Tropsha, AlexanderJournal of biomedical informatics2021 0734119691
Automated Detection of Stressful Conversations Using Wearable Physiological and Inertial Sensors.Bari, Rummana; Rahman, Md Mahbubur; Saleheen, Nazir; Parsons, Megan Battles; Buder, Eugene H; Kumar, SantoshProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies2020 Dec34099995
Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging.Ning, Kaida; Duffy, Ben A; Franklin, Meredith; Matloff, Will; Zhao, Lu; Arzouni, Nibal; Sun, Fengzhu; Toga, Arthur WNeurobiology of aging2021 0934098431
Multimodal EEG-fMRI: advancing insight into large-scale human brain dynamics.Chang, Catie; Chen, Jingyuan ECurrent opinion in biomedical engineering2021 Jun34095643
Optimizing Nondecomposable Data Dependent Regularizers via Lagrangian Reparameterization Offers Significant Performance and Efficiency Gains.Ravi, Sathya N; Venkatesh, Abhay; Fung, Glenn M; Singh, VikasProceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence2020 Jun 1634094697
Rare variants regulate expression of nearby individual genes in multiple tissues.Li, Jiajin; Kong, Nahyun; Han, Buhm; Sul, Jae HoonPLoS genetics2021 0634061836
Interaction Between SNP Genotype and Efficacy of Anastrozole and Exemestane in Early-Stage Breast Cancer.Cairns, Junmei; Kalari, Krishna R; Ingle, James N; Shepherd, Lois E; Ellis, Matthew J; Goss, Paul E; Barman, Poulami; Carlson, Erin E; Goodnature, Barbara; Goetz, Matthew P; Weinshilboum, Richard M; Gao, Huanyao; Wang, LieweiClinical pharmacology and therapeutics2021 May 2834048027
Wearable sensors enable personalized predictions of clinical laboratory measurements.Dunn, Jessilyn; Kidzinski, Lukasz; Runge, Ryan; Witt, Daniel; Hicks, Jennifer L; Schüssler-Fiorenza Rose, Sophia Miryam; Li, Xiao; Bahmani, Amir; Delp, Scott L; Hastie, Trevor; Snyder, Michael PNature medicine2021 Jun34031607
What Does the Evidence Say? Models to Help Make Sense of the Biomedical Literature.Wallace, Byron CIJCAI : proceedings of the conference2019 Aug34025086
Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation.Liang, Dan; Elwell, Angela L; Aygün, Nil; Krupa, Oleh; Wolter, Justin M; Kyere, Felix A; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Yusupova, Marianna; Garrett, Melanie E; Ashley-Koch, Allison; Crawford, Gregory E; Love, Michael I; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Stein, Jason LNature neuroscience2021 Jul34017130
The SistematX Web Portal of Natural Products: An Update.Costa, Renan P O; Lucena, Lucas F; Silva, Lorena Mara A; Zocolo, Guilherme Julião; Herrera-Acevedo, Chonny; Scotti, Luciana; Da-Costa, Fernando Batista; Ionov, Nikita; Poroikov, Vladimir; Muratov, Eugene N; Scotti, Marcus TJournal of chemical information and modeling2021 06 2834014674
Testing the extreme male brain hypothesis: Is autism spectrum disorder associated with a more male-typical brain?van Eijk, Liza; Zietsch, Brendan PAutism research : official journal of the International Society for Autism Research2021 0834008924
Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR): Holistic Approach to Unravel Antibacterial Resistance in East Africa (HATUA).Asiimwe, Benon B; Kiiru, John; Mshana, Stephen E; Neema, Stella; Keenan, Katherine; Kesby, Mike; Mwanga, Joseph R; Sloan, Derek J; Mmbaga, Blandina T; Smith, V Anne; Gillespie, Stephen H; Lynch, Andy G; Sandeman, Alison; Stelling, John; Elliott, Alison; Aanensen, David M; Kibiki, Gibson E; Sabiiti, Wilber; Holden, Matthew T G; HATUA ConsortiumBMJ open2021 03 0834006022
Mobile Health: making the leap to research and clinics.Ku, Joy P; Sim, IdaNPJ digital medicine2021 May 1433990671
fMRI-based detection of alertness predicts behavioral response variability.Goodale, Sarah E; Ahmed, Nafis; Zhao, Chong; de Zwart, Jacco A; Özbay, Pinar S; Picchioni, Dante; Duyn, Jeff; Englot, Dario J; Morgan, Victoria L; Chang, CatieeLife2021 May 0733960930
Endocannabinoid Gene × Gene Interaction Association to Alcohol Use Disorder in Two Adolescent Cohorts.Elkrief, Laurent; Spinney, Sean; Vosberg, Daniel E; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Pausova, Zdenka; Paus, Tomáš; Huguet, Guillaume; Conrod, Patricia; IMAGEN consortiumFrontiers in psychiatry202133959052
White matter hyperintensities segmentation using the ensemble U-Net with multi-scale highlighting foregrounds.Park, Gilsoon; Hong, Jinwoo; Duffy, Ben A; Lee, Jong-Min; Kim, HosungNeuroImage2021 08 1533957235
A high-quality bonobo genome refines the analysis of hominid evolution.Mao, Yafei; Catacchio, Claudia R; Hillier, LaDeana W; Porubsky, David; Li, Ruiyang; Sulovari, Arvis; Fernandes, Jason D; Montinaro, Francesco; Gordon, David S; Storer, Jessica M; Haukness, Marina; Fiddes, Ian T; Murali, Shwetha Canchi; Dishuck, Philip C; Hsieh, PingHsun; Harvey, William T; Audano, Peter A; Mercuri, Ludovica; Piccolo, Ilaria; Antonacci, Francesca; Munson, Katherine M; Lewis, Alexandra P; Baker, Carl; Underwood, Jason G; Hoekzema, Kendra; Huang, Tzu-Hsueh; Sorensen, Melanie; Walker, Jerilyn A; Hoffman, Jinna; Thibaud-Nissen, Françoise; Salama, Sofie R; Pang, Andy W C; Lee, Joyce; Hastie, Alex R; Paten, Benedict; Batzer, Mark A; Diekhans, Mark; Ventura, Mario; Eichler, Evan ENature2021 May 0533953399
Sex is a defining feature of neuroimaging phenotypes in major brain disorders.Salminen, Lauren E; Tubi, Meral A; Bright, Joanna; Thomopoulos, Sophia I; Wieand, Alyssa; Thompson, Paul MHuman brain mapping2021 May 0533949018
Exploring JSON-LD as an Executable Definition of FHIR RDF to Enable.Solbrig, Harold R; Solbrig, Harold R; Prud'hommeaux, Eric; Booth, David; Endle, Cory M; Stone, Daniel J; Jiang, GuoqianAMIA ... Annual Symposium proceedings. AMIA Symposium202033936490
Patient-Specific Modeling with Personalized Decision Paths.Johnson, Adriana; Cooper, Gregory F; Visweswaran, ShyamAMIA ... Annual Symposium proceedings. AMIA Symposium202033936434
Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data.Brown, Katherine A; Sarkar, Indra Neil; Chen, Elizabeth SAMIA ... Annual Symposium proceedings. AMIA Symposium202033936398
Multi-task Dictionary Learning based on Convolutional Neural Networks for Longitudinal Clinical Score Predictions in Alzheimer's Disease.Dong, Qunxi; Zhang, Jie; Li, Qingyang; Thompson, Pau M; Caselli, Richard J; Ye, Jieping; Wang, Yalin; Alzheimers Disease Neuroimaging InitiativeHuman brain and artificial intelligence : first International Workshop, HBAI 2019, held in conjunction with IJCAI 2019, Macao, China, August 12, 2019, revised selected papers. HBAI (Conference) (1st : 2019 : Macau, China)201933907742
Reward Processing in Novelty Seekers: A Transdiagnostic Psychiatric Imaging Biomarker.Qi, Shile; Schumann, Gunter; Bustillo, Juan; Turner, Jessica A; Jiang, Rongtao; Zhi, Dongmei; Fu, Zening; Mayer, Andrew R; Vergara, Victor M; Silva, Rogers F; Iraji, Armin; Chen, Jiayu; Damaraju, Eswar; Ma, Xiaohong; Yang, Xiao; Stevens, Michael; Mathalon, Daniel H; Ford, Judith M; Voyvodic, James; Mueller, Bryon A; Belger, Aysenil; Potkin, Steven G; Preda, Adrian; Zhuo, Chuanjun; Xu, Yong; Chu, Congying; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Calhoun, Vince D; Sui, Jing; IMAGEN ConsortiumBiological psychiatry2021 Oct 1533875230
A Full RNS Variant of Approximate Homomorphic Encryption.Cheon, Jung Hee; Han, Kyoohyung; Kim, Andrey; Kim, Miran; Song, YongsooSelected areas in cryptography : ... annual international workshop, SAC ... proceedings. SAC (Conference)201833870337
Geometric Brain Surface Network For Brain Cortical Parcellation.Zhang, Wen; Wang, YalinGraph Learning in Medical Imaging : First International Workshop, GLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 17, 2019, Proceedings201933870335
THE STRATIFIED MICRO-RANDOMIZED TRIAL DESIGN: SAMPLE SIZE CONSIDERATIONS FOR TESTING NESTED CAUSAL EFFECTS OF TIME-VARYING TREATMENTS.Dempsey, Walter; Liao, Peng; Kumar, Santosh; Murphy, Susan AThe annals of applied statistics2020 Jun33868539
Large-Scale Analysis of Visualization Options in a Citizen Science Game.Miller, Josh Aaron; Lee, Vivian; Cooper, Seth; El-Nasr, Magy SeifProceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play2019 Oct33860290
Social Media Activism and Convergence in Tweet Topics After the Initial #MeToo Movement for Two Distinct Groups of Twitter Users.Baik, Jason M; Nyein, Thet H; Modrek, SepidehJournal of interpersonal violence2021 Apr 1233840303
Artificial intelligence decision-making in mobile health.Menictas, Marianne; Rabbi, Mashfiqui; Klasnja, Predrag; Murphy, SusanThe biochemist2019 Oct33828355
Associations Between Exposure to Gestational Diabetes Mellitus In Utero and Daily Energy Intake, Brain Responses to Food Cues, and Adiposity in Children.Luo, Shan; Angelo, Brendan C; Chow, Ting; Monterosso, John R; Thompson, Paul M; Xiang, Anny H; Page, Kathleen ADiabetes care2021 May33827804
The interaction of child abuse and rs1360780 of the FKBP5 gene is associated with amygdala resting-state functional connectivity in young adults.Wesarg, Christiane; Veer, Ilya M; Oei, Nicole Y L; Daedelow, Laura S; Lett, Tristram A; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Brühl, Rüdiger; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Heinz, Andreas; Walter, Henrik; IMAGEN ConsortiumHuman brain mapping2021 Jul33818852
Robust Cortical Thickness Morphometry of Neonatal Brain and Systematic Evaluation Using Multi-Site MRI Datasets.Liu, Mengting; Lepage, Claude; Kim, Sharon Y; Jeon, Seun; Kim, Sun Hyung; Simon, Julia Pia; Tanaka, Nina; Yuan, Shiyu; Islam, Tasfiya; Peng, Bailin; Arutyunyan, Knarik; Surento, Wesley; Kim, Justin; Jahanshad, Neda; Styner, Martin A; Toga, Arthur W; Barkovich, Anthony James; Xu, Duan; Evans, Alan C; Kim, HosungFrontiers in neuroscience202133815050
Off-Policy Estimation of Long-Term Average Outcomes with Applications to Mobile Health.Liao, Peng; Klasnja, Predrag; Murphy, SusanJournal of the American Statistical Association202133814653
Structural and functional brain alterations revealed by neuroimaging in CNV carriers.Moreau, Clara A; Ching, Christopher Rk; Kumar, Kuldeep; Jacquemont, Sebastien; Bearden, Carrie ECurrent opinion in genetics & development2021 0633812299
Multi-Resemblance Multi-Target Low-Rank Coding for Prediction of Cognitive Decline With Longitudinal Brain Images.Zhang, Jie; Wu, Jianfeng; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, YalinIEEE transactions on medical imaging2021 0833798076
Characterizing neuroanatomic heterogeneity in people with and without ADHD based on subcortical brain volumes.Li, Ting; van Rooij, Daan; Roth Mota, Nina; Buitelaar, Jan K; ENIGMA ADHD Working Group; Hoogman, Martine; Arias Vasquez, Alejandro; Franke, BarbaraJournal of child psychology and psychiatry, and allied disciplines2021 Mar 3033786843
Selective morphological and volumetric alterations in the hippocampus of children exposed in utero to gestational diabetes mellitus.Lynch, Kirsten M; Alves, Jasmin M; Chow, Ting; Clark, Kristi A; Luo, Shan; Toga, Arthur W; Xiang, Anny H; Page, Kathleen AHuman brain mapping2021 Mar 2533764653
A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: A useful proteomic resource for a versatile pathogen.Reales-Calderón, J A; Sun, Z; Mascaraque, V; Pérez-Navarro, E; Vialás, V; Deutsch, E W; Moritz, R L; Gil, C; Martínez, J L; Molero, GJournal of proteomics2021 05 1533757883
Analysis of structural brain asymmetries in attention-deficit/hyperactivity disorder in 39 datasets.Postema, Merel C; Hoogman, Martine; Ambrosino, Sara; Asherson, Philip; Banaschewski, Tobias; Bandeira, Cibele E; Baranov, Alexandr; Bau, Claiton H D; Baumeister, Sarah; Baur-Streubel, Ramona; Bellgrove, Mark A; Biederman, Joseph; Bralten, Janita; Brandeis, Daniel; Brem, Silvia; Buitelaar, Jan K; Busatto, Geraldo F; Castellanos, Francisco X; Cercignani, Mara; Chaim-Avancini, Tiffany M; Chantiluke, Kaylita C; Christakou, Anastasia; Coghill, David; Conzelmann, Annette; Cubillo, Ana I; Cupertino, Renata B; de Zeeuw, Patrick; Doyle, Alysa E; Durston, Sarah; Earl, Eric A; Epstein, Jeffery N; Ethofer, Thomas; Fair, Damien A; Fallgatter, Andreas J; Faraone, Stephen V; Frodl, Thomas; Gabel, Matt C; Gogberashvili, Tinatin; Grevet, Eugenio H; Haavik, Jan; Harrison, Neil A; Hartman, Catharina A; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hohmann, Sarah; Høvik, Marie F; Jernigan, Terry L; Kardatzki, Bernd; Karkashadze, Georgii; Kelly, Clare; Kohls, Gregor; Konrad, Kerstin; Kuntsi, Jonna; Lazaro, Luisa; Lera-Miguel, Sara; Lesch, Klaus-Peter; Louza, Mario R; Lundervold, Astri J; Malpas, Charles B; Mattos, Paulo; McCarthy, Hazel; Namazova-Baranova, Leyla; Nicolau, Rosa; Nigg, Joel T; Novotny, Stephanie E; Oberwelland Weiss, Eileen; O'Gorman Tuura, Ruth L; Oosterlaan, Jaap; Oranje, Bob; Paloyelis, Yannis; Pauli, Paul; Picon, Felipe A; Plessen, Kerstin J; Ramos-Quiroga, J Antoni; Reif, Andreas; Reneman, Liesbeth; Rosa, Pedro G P; Rubia, Katya; Schrantee, Anouk; Schweren, Lizanne J S; Seitz, Jochen; Shaw, Philip; Silk, Tim J; Skokauskas, Norbert; Soliva Vila, Juan C; Stevens, Michael C; Sudre, Gustavo; Tamm, Leanne; Tovar-Moll, Fernanda; van Erp, Theo G M; Vance, Alasdair; Vilarroya, Oscar; Vives-Gilabert, Yolanda; von Polier, Georg G; Walitza, Susanne; Yoncheva, Yuliya N; Zanetti, Marcus V; Ziegler, Georg C; Glahn, David C; Jahanshad, Neda; Medland, Sarah E; ENIGMA ADHD Working Group; Thompson, Paul M; Fisher, Simon E; Franke, Barbara; Francks, ClydeJournal of child psychology and psychiatry, and allied disciplines2021 Oct33748971
The role of maternal BMI on brain food cue reactivity in children: a preliminary study.Luo, Shan; Angelo, Brendan; Chow, Ting; Monterosso, John R; Xiang, Anny H; Thompson, Paul M; Page, Kathleen ABrain imaging and behavior2021 Mar 1833738669
Assessment of Extractability and Accuracy of Electronic Health Record Data for Joint Implant Registries.Giori, Nicholas J; Radin, John; Callahan, Alison; Fries, Jason A; Halilaj, Eni; Ré, Christopher; Delp, Scott L; Shah, Nigam H; Harris, Alex H SJAMA network open2021 03 0133720372
Predicting future cognitive decline with hyperbolic stochastic coding.Zhang, Jie; Dong, Qunxi; Shi, Jie; Li, Qingyang; Stonnington, Cynthia M; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, YalinMedical image analysis2021 0533711742
Unsupervised Word Embedding Learning by Incorporating Local and Global Contexts.Meng, Yu; Huang, Jiaxin; Wang, Guangyuan; Wang, Zihan; Zhang, Chao; Han, JiaweiFrontiers in big data202033693384
The emerging clinical role of wearables: factors for successful implementation in healthcare.Smuck, Matthew; Odonkor, Charles A; Wilt, Jonathan K; Schmidt, Nicolas; Swiernik, Michael ANPJ digital medicine2021 Mar 1033692479
Published Anti-SARS-CoV-2 In Vitro Hits Share Common Mechanisms of Action that Synergize with Antivirals.Xing, Jing; Paithankar, Shreya; Liu, Ke; Uhl, Katie; Li, Xiaopeng; Ko, Meehyun; Kim, Seungtaek; Haskins, Jeremy; Chen, BinbioRxiv : the preprint server for biology2021 Mar 0433688643
Differential predictors for alcohol use in adolescents as a function of familial risk.Tschorn, Mira; Lorenz, Robert C; O'Reilly, Paul F; Reichenberg, Abraham; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Heinz, Andreas; Rapp, Michael A; IMAGEN ConsortiumTranslational psychiatry2021 Mar 0433664233
Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression.MahmoudianDehkordi, Siamak; Ahmed, Ahmed T; Bhattacharyya, Sudeepa; Han, Xianlin; Baillie, Rebecca A; Arnold, Matthias; Skime, Michelle K; John-Williams, Lisa St; Moseley, M Arthur; Thompson, J Will; Louie, Gregory; Riva-Posse, Patricio; Craighead, W Edward; McDonald, William; Krishnan, Ranga; Rush, A John; Frye, Mark A; Dunlop, Boadie W; Weinshilboum, Richard M; Kaddurah-Daouk, Rima; Mood Disorders Precision Medicine Consortium (MDPMC)Translational psychiatry2021 Mar 0233654056
Examination of the association between exposure to childhood maltreatment and brain structure in young adults: a machine learning analysis.Price, Matthew; Albaugh, Matthew; Hahn, Sage; Juliano, Anthony C; Fani, Negar; Brier, Zoe M F; Legrand, Alison C; van Stolk-Cooke, Katherine; Chaarani, Bader; Potter, Alexandra; Peck, Kelly; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, HughNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology2021 1033637836
Smoking Cessation Using Wearable Sensors: Protocol for a Microrandomized Trial.Hernandez, Laura M; Wetter, David W; Kumar, Santosh; Sutton, Steven K; Vinci, ChristineJMIR research protocols2021 Feb 2433625366
Cortical thickness across the lifespan: Data from 17,075 healthy individuals aged 3-90 years.Frangou, Sophia; Modabbernia, Amirhossein; Williams, Steven C R; Papachristou, Efstathios; Doucet, Gaelle E; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andersson, Micael; Andreasen, Nancy C; Andreassen, Ole A; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Buckner, Randy L; Calhoun, Vincent; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Cervenka, Simon; Chaim-Avancini, Tiffany M; Ching, Christopher R K; Chubar, Victoria; Clark, Vincent P; Conrod, Patricia; Conzelmann, Annette; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; Dale, Anders M; Davey, Christopher; de Geus, Eco J C; de Haan, Lieuwe; de Zubicaray, Greig I; den Braber, Anouk; Dickie, Erin W; Di Giorgio, Annabella; Doan, Nhat Trung; Dørum, Erlend S; Ehrlich, Stefan; Erk, Susanne; Espeseth, Thomas; Fatouros-Bergman, Helena; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Frodl, Thomas; Fuentes-Claramonte, Paola; Glahn, David C; Gotlib, Ian H; Grabe, Hans-Jörgen; Grimm, Oliver; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Rachel E; Gur, Ruben C; Harrison, Ben J; Hartman, Catharine A; Hatton, Sean N; Heinz, Andreas; Heslenfeld, Dirk J; Hibar, Derrek P; Hickie, Ian B; Ho, Beng-Choon; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony; Jernigan, Terry L; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kahn, Rene; Kalnin, Andrew; Kanai, Ryota; Klein, Marieke; Klyushnik, Tatyana P; Koenders, Laura; Koops, Sanne; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lázaro, Luisa; Lebedeva, Irina; Lee, Won Hee; Lesch, Klaus-Peter; Lochner, Christine; Machielsen, Marise W J; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Colm; McDonald, Brenna C; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; Menchón, José M; Medland, Sarah E; Meyer-Lindenberg, Andreas; Naaijen, Jilly; Najt, Pablo; Nakao, Tomohiro; Nordvik, Jan E; Nyberg, Lars; Oosterlaan, Jaap; de la Foz, Víctor Ortiz-García; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Potkin, Steven G; Radua, Joaquim; Reif, Andreas; Rinker, Daniel A; Roffman, Joshua L; Rosa, Pedro G P; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sánchez-Juan, Pascual; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Schmaal, Lianne; Schnell, Knut; Schumann, Gunter; Sim, Kang; Smoller, Jordan W; Sommer, Iris; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Swagerman, Suzanne C; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; Turner, Jessica A; Uhlmann, Anne; van den Heuvel, Odile A; van den Meer, Dennis; van der Wee, Nic J A; van Haren, Neeltje E M; van 't Ent, Dennis; van Erp, Theo G M; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Walton, Esther; Wang, Lei; Wang, Yang; Wassink, Thomas H; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather; Wierenga, Lara M; Wittfeld, Katharina; Wolf, Daniel H; Worker, Amanda; Wright, Margaret J; Yang, Kun; Yoncheva, Yulyia; Zanetti, Marcus V; Ziegler, Georg C; Karolinska Schizophrenia Project (KaSP); Thompson, Paul M; Dima, DanaiHuman brain mapping2021 Feb 1733595143
Subcortical volumes across the lifespan: Data from 18,605 healthy individuals aged 3-90 years.Dima, Danai; Modabbernia, Amirhossein; Papachristou, Efstathios; Doucet, Gaelle E; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andersson, Micael; Andreasen, Nancy C; Andreassen, Ole A; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Buckner, Randy L; Calhoun, Vincent; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Cervenka, Simon; Chaim-Avancini, Tiffany M; Ching, Christopher R K; Chubar, Victoria; Clark, Vincent P; Conrod, Patricia; Conzelmann, Annette; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; Dale, Anders M; Davey, Christopher; de Geus, Eco J C; de Haan, Lieuwe; de Zubicaray, Greig I; den Braber, Anouk; Dickie, Erin W; Di Giorgio, Annabella; Doan, Nhat Trung; Dørum, Erlend S; Ehrlich, Stefan; Erk, Susanne; Espeseth, Thomas; Fatouros-Bergman, Helena; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Frodl, Thomas; Fuentes-Claramonte, Paola; Glahn, David C; Gotlib, Ian H; Grabe, Hans-Jörgen; Grimm, Oliver; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Rachel E; Gur, Ruben C; Harrison, Ben J; Hartman, Catharine A; Hatton, Sean N; Heinz, Andreas; Heslenfeld, Dirk J; Hibar, Derrek P; Hickie, Ian B; Ho, Beng-Choon; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony; Jernigan, Terry L; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kahn, Rene; Kalnin, Andrew; Kanai, Ryota; Klein, Marieke; Klyushnik, Tatyana P; Koenders, Laura; Koops, Sanne; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lázaro, Luisa; Lebedeva, Irina; Lee, Won Hee; Lesch, Klaus-Peter; Lochner, Christine; Machielsen, Marise W J; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Colm; McDonald, Brenna C; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; Menchón, José M; Medland, Sarah E; Meyer-Lindenberg, Andreas; Naaijen, Jilly; Najt, Pablo; Nakao, Tomohiro; Nordvik, Jan E; Nyberg, Lars; Oosterlaan, Jaap; de la Foz, Víctor Ortiz-García; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Potkin, Steven G; Radua, Joaquim; Reif, Andreas; Rinker, Daniel A; Roffman, Joshua L; Rosa, Pedro G P; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sánchez-Juan, Pascual; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Schmaal, Lianne; Schnell, Knut; Schumann, Gunter; Sim, Kang; Smoller, Jordan W; Sommer, Iris; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Swagerman, Suzanne C; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; Turner, Jessica A; Uhlmann, Anne; van den Heuvel, Odile A; van den Meer, Dennis; van der Wee, Nic J A; van Haren, Neeltje E M; Van't Ent, Dennis; van Erp, Theo G M; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Walton, Esther; Wang, Lei; Wang, Yang; Wassink, Thomas H; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather; Wierenga, Lara M; Williams, Steven C R; Wittfeld, Katharina; Wolf, Daniel H; Worker, Amanda; Wright, Margaret J; Yang, Kun; Yoncheva, Yulyia; Zanetti, Marcus V; Ziegler, Georg C; Thompson, Paul M; Frangou, Sophia; Karolinska Schizophrenia Project (KaSP)Human brain mapping2021 Feb 1133570244
Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study.Emad, Amin; Sinha, SaurabhNPJ systems biology and applications2021 Feb 0833558504
Neural network involving medial orbitofrontal cortex and dorsal periaqueductal gray regulation in human alcohol abuse.Jia, Tianye; Xie, Chao; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Robbins, Trevor W; Feng, Jianfeng; IMAGEN ConsortiumScience advances2021 Feb33536210
Digital Medicine Community Perspectives and Challenges: Survey Study.Bent, Brinnae; Sim, Ida; Dunn, Jessilyn PJMIR mHealth and uHealth2021 Feb 0333533721
Daily, weekly, seasonal and menstrual cycles in women's mood, behaviour and vital signs.Pierson, Emma; Althoff, Tim; Thomas, Daniel; Hillard, Paula; Leskovec, JureNature human behaviour2021 0633526880
Evidence for similar structural brain anomalies in youth and adult attention-deficit/hyperactivity disorder: a machine learning analysis.Zhang-James, Yanli; Helminen, Emily C; Liu, Jinru; ENIGMA-ADHD Working Group; Franke, Barbara; Hoogman, Martine; Faraone, Stephen VTranslational psychiatry2021 Feb 0133526765
Mapping cortical and subcortical asymmetries in substance dependence: Findings from the ENIGMA Addiction Working Group.Cao, Zhipeng; Ottino-Gonzalez, Jonatan; Cupertino, Renata B; Schwab, Nathan; Hoke, Colin; Catherine, Orr; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Momenan, Reza; Paulus, Martin P; Schmaal, Lianne; Sinha, Rajita; Sjoerds, Zsuzsika; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Uhlmann, Anne; van Holst, Ruth J; Veltman, Dick J; Wiers, Reinout W; Yücel, Murat; Zhang, Sheng; Jahanshad, Neda; Thompson, Paul M; Conrod, Patricia; Mackey, Scott; Garavan, HughAddiction biology2021 0933508888
Are psychotic-like experiences related to a discontinuation of cannabis consumption in young adults?Daedelow, Laura S; Banaschewski, Tobias; Berning, Moritz; Bokde, Arun L W; Brühl, Rüdiger; Burke Quinlan, Erin; Curran, H Valerie; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Hardon, Anita; Kaminski, Jakob; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Murray, Hayley; Nees, Frauke; Oei, Nicole Y L; Papadopoulos Orfanos, Dimitri; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Rosenthal, Annika; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Wiers, Reinout W; Schumann, Gunter; Heinz, Andreas; ERANID Consortium; IMAGEN ConsortiumSchizophrenia research2021 0233493775
The Human Brain Is Best Described as Being on a Female/Male Continuum: Evidence from a Neuroimaging Connectivity Study.Zhang, Yi; Luo, Qiang; Huang, Chu-Chung; Lo, Chun-Yi Zac; Langley, Christelle; Desrivières, Sylvane; Quinlan, Erin Burke; Banaschewski, Tobias; Millenet, Sabina; Bokde, Arun L W; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Paillère-Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Tsai, Shih-Jen; Lin, Ching-Po; Bullmore, Ed; Schumann, Gunter; Sahakian, Barbara J; Feng, Jianfeng; IMAGEN consortiumCerebral cortex (New York, N.Y. : 1991)2021 05 1033471126
FairALM: Augmented Lagrangian Method for Training Fair Models with Little Regret.Lokhande, Vishnu Suresh; Akash, Aditya Kumar; Ravi, Sathya N; Singh, VikasComputer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision2020 Aug33462570
Generating Accurate Pseudo-labels in Semi-Supervised Learning and Avoiding Overconfident Predictions via Hermite Polynomial Activations.Lokhande, Vishnu Suresh; Tasneeyapant, Songwong; Venkatesh, Abhay; Ravi, Sathya N; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition2020 Jun33462534
Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions.Duffy, Ben A; Zhao, Lu; Sepehrband, Farshid; Min, Joyce; Wang, Danny Jj; Shi, Yonggang; Toga, Arthur W; Kim, Hosung; Alzheimer's Disease Neuroimaging InitiativeNeuroImage2021 Jan 1533460797
Structural brain imaging studies offer clues about the effects of the shared genetic etiology among neuropsychiatric disorders.Radonjić, Nevena V; Hess, Jonathan L; Rovira, Paula; Andreassen, Ole; Buitelaar, Jan K; Ching, Christopher R K; Franke, Barbara; Hoogman, Martine; Jahanshad, Neda; McDonald, Carrie; Schmaal, Lianne; Sisodiya, Sanjay M; Stein, Dan J; van den Heuvel, Odile A; van Erp, Theo G M; van Rooij, Daan; Veltman, Dick J; Thompson, Paul; Faraone, Stephen VMolecular psychiatry2021 0633456050
Association of Immunosuppression and Viral Load With Subcortical Brain Volume in an International Sample of People Living With HIV.Nir, Talia M; Fouche, Jean-Paul; Ananworanich, Jintanat; Ances, Beau M; Boban, Jasmina; Brew, Bruce J; Chaganti, Joga R; Chang, Linda; Ching, Christopher R K; Cysique, Lucette A; Ernst, Thomas; Faskowitz, Joshua; Gupta, Vikash; Harezlak, Jaroslaw; Heaps-Woodruff, Jodi M; Hinkin, Charles H; Hoare, Jacqueline; Joska, John A; Kallianpur, Kalpana J; Kuhn, Taylor; Lam, Hei Y; Law, Meng; Lebrun-Frénay, Christine; Levine, Andrew J; Mondot, Lydiane; Nakamoto, Beau K; Navia, Bradford A; Pennec, Xavier; Porges, Eric C; Salminen, Lauren E; Shikuma, Cecilia M; Surento, Wesley; Thames, April D; Valcour, Victor; Vassallo, Matteo; Woods, Adam J; Thompson, Paul M; Cohen, Ronald A; Paul, Robert; Stein, Dan J; Jahanshad, NedaJAMA network open2021 01 0433449093
A neural network to predict the knee adduction moment in patients with osteoarthritis using anatomical landmarks obtainable from 2D video analysis.Boswell, M A; Uhlrich, S D; Kidziński, Ł; Thomas, K; Kolesar, J A; Gold, G E; Beaupre, G S; Delp, S LOsteoarthritis and cartilage2021 Mar33422707
xGAP: A python based efficient, modular, extensible and fault tolerant genomic analysis pipeline for variant discovery.Gorla, Aditya; Jew, Brandon; Zhang, Luke; Sul, Jae HoonBioinformatics (Oxford, England)2021 Jan 0833416856
Coordinating Global Multi-Site Studies of Military-Relevant Traumatic Brain Injury: Opportunities, Challenges, and Harmonization Guidelines.Tate, David F; Dennis, Emily L; Adams, John T; Adamson, Maheen M; Belanger, Heather G; Bigler, Erin D; Bouchard, Heather C; Clark, Alexandra L; Delano-Wood, Lisa M; Disner, Seth G; Eapen, Blessen C; Franz, Carol E; Geuze, Elbert; Goodrich-Hunsaker, Naomi J; Han, Kihwan; Hayes, Jasmeet P; Hinds 2nd, Sidney R; Hodges, Cooper B; Hovenden, Elizabeth S; Irimia, Andrei; Kenney, Kimbra; Koerte, Inga K; Kremen, William S; Levin, Harvey S; Lindsey, Hannah M; Morey, Rajendra A; Newsome, Mary R; Ollinger, John; Pugh, Mary Jo; Scheibel, Randall S; Shenton, Martha E; Sullivan, Danielle R; Taylor, Brian A; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin Sc; Wang, Xin; Ware, Ashley L; Zafonte, Ross; Thompson, Paul M; Wilde, Elisabeth ABrain imaging and behavior2021 Apr33409819
Network Analysis Reveals a Distinct Axis of Macrophage Activation in Response to Conflicting Inflammatory Cues.Liu, Xiaji; Zhang, Jingyuan; Zeigler, Angela C; Nelson, Anders R; Lindsey, Merry L; Saucerman, Jeffrey JJournal of immunology (Baltimore, Md. : 1950)2021 Feb 1533408259
Exploring the value of MALDI-TOF MS for the detection of clonal outbreaks of Burkholderia contaminans.Fiamanya, Selali; Cipolla, Lucía; Prieto, Mónica; Stelling, JohnJournal of microbiological methods2021 Feb33383044
Using indication embeddings to represent patient health for drug safety studies.Melamed, Rachel DJAMIA open2020 Oct33376961
Unmixing for Causal Inference: Thoughts on McCaffrey and Danks.Zhang, Kun; Glymour, Madelyn R KThe British journal for the philosophy of science2020 Dec33376450
OpenSim Moco: Musculoskeletal optimal control.Dembia, Christopher L; Bianco, Nicholas A; Falisse, Antoine; Hicks, Jennifer L; Delp, Scott LPLoS computational biology2020 1233370252
Community Approaches for Integrating Environmental Exposures into Human Models of Disease.Thessen, Anne E; Grondin, Cynthia J; Kulkarni, Resham D; Brander, Susanne; Truong, Lisa; Vasilevsky, Nicole A; Callahan, Tiffany J; Chan, Lauren E; Westra, Brian; Willis, Mary; Rothenberg, Sarah E; Jarabek, Annie M; Burgoon, Lyle; Korrick, Susan A; Haendel, Melissa AEnvironmental health perspectives2020 1233369481
FreeSurfer-based segmentation of hippocampal subfields: A review of methods and applications, with a novel quality control procedure for ENIGMA studies and other collaborative efforts.Sämann, Philipp G; Iglesias, Juan Eugenio; Gutman, Boris; Grotegerd, Dominik; Leenings, Ramona; Flint, Claas; Dannlowski, Udo; Clarke-Rubright, Emily K; Morey, Rajendra A; van Erp, Theo G M; Whelan, Christopher D; Han, Laura K M; van Velzen, Laura S; Cao, Bo; Augustinack, Jean C; Thompson, Paul M; Jahanshad, Neda; Schmaal, LianneHuman brain mapping2020 Dec 2733368865
OCTAD: an open workspace for virtually screening therapeutics targeting precise cancer patient groups using gene expression features.Zeng, Billy; Glicksberg, Benjamin S; Newbury, Patrick; Chekalin, Evgeny; Xing, Jing; Liu, Ke; Wen, Anita; Chow, Caven; Chen, BinNature protocols2021 0233361798
Obstacles to the reuse of study metadata in ClinicalTrials.gov.Miron, Laura; Gonçalves, Rafael S; Musen, Mark AScientific data2020 12 1833339830
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.Warren, Wesley C; Harris, R Alan; Haukness, Marina; Fiddes, Ian T; Murali, Shwetha C; Fernandes, Jason; Dishuck, Philip C; Storer, Jessica M; Raveendran, Muthuswamy; Hillier, LaDeana W; Porubsky, David; Mao, Yafei; Gordon, David; Vollger, Mitchell R; Lewis, Alexandra P; Munson, Katherine M; DeVogelaere, Elizabeth; Armstrong, Joel; Diekhans, Mark; Walker, Jerilyn A; Tomlinson, Chad; Graves-Lindsay, Tina A; Kremitzki, Milinn; Salama, Sofie R; Audano, Peter A; Escalona, Merly; Maurer, Nicholas W; Antonacci, Francesca; Mercuri, Ludovica; Maggiolini, Flavia A M; Catacchio, Claudia Rita; Underwood, Jason G; O'Connor, David H; Sanders, Ashley D; Korbel, Jan O; Ferguson, Betsy; Kubisch, H Michael; Picker, Louis; Kalin, Ned H; Rosene, Douglas; Levine, Jon; Abbott, David H; Gray, Stanton B; Sanchez, Mar M; Kovacs-Balint, Zsofia A; Kemnitz, Joseph W; Thomasy, Sara M; Roberts, Jeffrey A; Kinnally, Erin L; Capitanio, John P; Skene, J H Pate; Platt, Michael; Cole, Shelley A; Green, Richard E; Ventura, Mario; Wiseman, Roger W; Paten, Benedict; Batzer, Mark A; Rogers, Jeffrey; Eichler, Evan EScience (New York, N.Y.)2020 12 1833335035
Synergistic and Antagonistic Drug Combinations against SARS-CoV-2.Bobrowski, Tesia; Chen, Lu; Eastman, Richard T; Itkin, Zina; Shinn, Paul; Chen, Catherine Z; Guo, Hui; Zheng, Wei; Michael, Sam; Simeonov, Anton; Hall, Matthew D; Zakharov, Alexey V; Muratov, Eugene NMolecular therapy : the journal of the American Society of Gene Therapy2021 02 0333333292
High-fidelity musculoskeletal modeling reveals a motor planning contribution to the speed-accuracy tradeoff.Al Borno, Mazen; Vyas, Saurabh; Shenoy, Krishna V; Delp, Scott LeLife.2020 Dec 16;33325369
Comparison of segmentation-free and segmentation-dependent computer-aided diagnosis of breast masses on a public mammography dataset.Sawyer Lee, Rebecca; Dunnmon, Jared A; He, Ann; Tang, Siyi; Ré, Christopher; Rubin, Daniel LJournal of biomedical informatics2021 0133309994
Vascular Geometry Associated with Anterior Communicating Artery Aneurysm Formation.Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, RoseWorld neurosurgery2021 Feb33307259
Engagement With a Behavior Change App for Alcohol Reduction: Data Visualization for Longitudinal Observational Study.Bell, Lauren; Garnett, Claire; Qian, Tianchen; Perski, Olga; Williamson, Elizabeth; Potts, Henry WwJournal of medical Internet research2020 12 1133306026
The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area.Tilot, Amanda K; Khramtsova, Ekaterina A; Liang, Dan; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Liu, Siyao; Brotman, Sarah M; Thompson, Paul M; Medland, Sarah E; Macciardi, Fabio; Stranger, Barbara E; Davis, Lea K; Fisher, Simon E; Stein, Jason LCerebral cortex (New York, N.Y. : 1991)2021 03 0533290510
MicroRNA miR-24-3p reduces DNA damage responses, apoptosis, and susceptibility to chronic obstructive pulmonary disease.Nouws, Jessica; Wan, Feng; Finnemore, Eric; Roque, Willy; Kim, So-Jin; Bazan, Isabel; Li, Chuan-Xing; Skold, C Magnus; Dai, Qile; Yan, Xiting; Chioccioli, Maurizio; Neumeister, Veronique; Britto, Clemente J; Sweasy, Joann; Bindra, Ranjit; Wheelock, Åsa M; Gomez, Jose L; Kaminski, Naftali; Lee, Patty J; Sauler, MaorJCI insight2021 Jan 2533290275
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Identification of Dysregulated Genes for Late-Onset Alzheimer's Disease Using Gene Expression Data in Brain.Arzouni, Nibal; Matloff, Will; Zhao, Lu; Ning, Kaida; Toga, Arthur WJournal of Alzheimer's disease & Parkinsonism202033282526
COVID-19 Knowledge Extractor (COKE): A Tool and a Web Portal to Extract Drug - Target Protein Associations from the CORD-19 Corpus of Scientific Publications on COVID-19.Korn, Daniel; Pervitsky, Vera; Bobrowski, Tesia; Alves, Vinicius; Schmitt, Charles; Bizon, Cristopher; Baker, Nancy; Chirkova, Rada; Cherkasov, Artem; Muratov, Eugene; Tropsha, AlexanderChemRxiv : the preprint server for chemistry2020 Nov 2633269341
The Human Phenotype Ontology in 2021.Köhler, Sebastian; Gargano, Michael; Matentzoglu, Nicolas; Carmody, Leigh C; Lewis-Smith, David; Vasilevsky, Nicole A; Danis, Daniel; Balagura, Ganna; Baynam, Gareth; Brower, Amy M; Callahan, Tiffany J; Chute, Christopher G; Est, Johanna L; Galer, Peter D; Ganesan, Shiva; Griese, Matthias; Haimel, Matthias; Pazmandi, Julia; Hanauer, Marc; Harris, Nomi L; Hartnett, Michael J; Hastreiter, Maximilian; Hauck, Fabian; He, Yongqun; Jeske, Tim; Kearney, Hugh; Kindle, Gerhard; Klein, Christoph; Knoflach, Katrin; Krause, Roland; Lagorce, David; McMurry, Julie A; Miller, Jillian A; Munoz-Torres, Monica C; Peters, Rebecca L; Rapp, Christina K; Rath, Ana M; Rind, Shahmir A; Rosenberg, Avi Z; Segal, Michael M; Seidel, Markus G; Smedley, Damian; Talmy, Tomer; Thomas, Yarlalu; Wiafe, Samuel A; Xian, Julie; Yüksel, Zafer; Helbig, Ingo; Mungall, Christopher J; Haendel, Melissa A; Robinson, Peter NNucleic acids research2021 01 0833264411
Association of Genetic and Phenotypic Assessments With Onset of Disordered Eating Behaviors and Comorbid Mental Health Problems Among Adolescents.Robinson, Lauren; Zhang, Zuo; Jia, Tianye; Bobou, Marina; Roach, Anna; Campbell, Iain; Irish, Madeleine; Quinlan, Erin Burke; Tay, Nicole; Barker, Edward D; Banaschewski, Tobias; Bokde, Arun L W; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Stringaris, Argyris; Penttilä, Jani; van Noort, Betteke; Grimmer, Yvonne; Martinot, Marie-Laure Paillère; Insensee, Corinna; Becker, Andreas; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike; Desrivières, Sylvane; IMAGEN ConsortiumJAMA network open2020 12 0133263759
Metaanalysis Reveals Genetic Correlates of Osteoporosis Pathogenesis.Hasan, Laith K; Aljabban, Jihad; Rohr, Michael; Mukhtar, Mohamed; Adapa, Nikhil; Salim, Rahaf; Aljabban, Nabeal; Syed, Saad; Syed, Sharjeel; Panahiazar, Maryam; Hadley, Dexter; Jarjour, WaelThe Journal of rheumatology2020 Dec 0133262303
Patch-Based Surface Morphometry Feature Selection with Federated Group Lasso Regression.Wu, Jianfeng; Zhang, Jie; Li, Qingyang; Su, Yi; Chen, Kewei; Reiman, Eric M; Wang, Jie; Lepore, Natasha; Ye, Jieping; Thompson, Paul M; Wang, YalinProceedings of SPIE--the International Society for Optical Engineering.2020 Oct;33250550
Bridging the Brain and Data Sciences.Van Horn, John DarrellBig data2021 0633211552
Network-based atrophy modeling in the common epilepsies: A worldwide ENIGMA study.Larivière, Sara; Rodríguez-Cruces, Raúl; Royer, Jessica; Caligiuri, Maria Eugenia; Gambardella, Antonio; Concha, Luis; Keller, Simon S; Cendes, Fernando; Yasuda, Clarissa; Bonilha, Leonardo; Gleichgerrcht, Ezequiel; Focke, Niels K; Domin, Martin; von Podewills, Felix; Langner, Soenke; Rummel, Christian; Wiest, Roland; Martin, Pascal; Kotikalapudi, Raviteja; O'Brien, Terence J; Sinclair, Benjamin; Vivash, Lucy; Desmond, Patricia M; Alhusaini, Saud; Doherty, Colin P; Cavalleri, Gianpiero L; Delanty, Norman; Kälviäinen, Reetta; Jackson, Graeme D; Kowalczyk, Magdalena; Mascalchi, Mario; Semmelroch, Mira; Thomas, Rhys H; Soltanian-Zadeh, Hamid; Davoodi-Bojd, Esmaeil; Zhang, Junsong; Lenge, Matteo; Guerrini, Renzo; Bartolini, Emanuele; Hamandi, Khalid; Foley, Sonya; Weber, Bernd; Depondt, Chantal; Absil, Julie; Carr, Sarah J A; Abela, Eugenio; Richardson, Mark P; Devinsky, Orrin; Severino, Mariasavina; Striano, Pasquale; Tortora, Domenico; Hatton, Sean N; Vos, Sjoerd B; Duncan, John S; Whelan, Christopher D; Thompson, Paul M; Sisodiya, Sanjay M; Bernasconi, Andrea; Labate, Angelo; McDonald, Carrie R; Bernasconi, Neda; Bernhardt, Boris CScience advances.2020 Nov;33208365
Uncovering Effective Explanations for Interactive Genomic Data Analysis.Huang, Silu; Blatti, Charles; Sinha, Saurabh; Parameswaran, AdityaPatterns (New York, N.Y.).2020 Sep 11;33205133
The Clinical Kinase Index: A Method to Prioritize Understudied Kinases as Drug Targets for the Treatment of Cancer.Essegian, Derek; Khurana, Rimpi; Stathias, Vasileios; Schürer, Stephan CCell reports. Medicine.2020 Oct 20;33205077
Association Between the Economic Environment and the Living Organ Donation Rate: Evidence and Implications.Lee, Sean S; Sielski, Michael W; Charpentier, Kevin PJournal of the American College of Surgeons2021 0233197569
Hidden Stratification Causes Clinically Meaningful Failures in Machine Learning for Medical Imaging.Oakden-Rayner, Luke; Dunnmon, Jared; Carneiro, Gustavo; Ré, ChristopherProceedings of the ACM Conference on Health, Inference, and Learning.2020 Apr;33196064
Using novel mobile sensors to assess stress and smoking lapse.Nakajima, Motohiro; Lemieux, Andrine M; Fiecas, Mark; Chatterjee, Soujanya; Sarker, Hillol; Saleheen, Nazir; Ertin, Emre; Kumar, Santosh; al'Absi, MustafaInternational journal of psychophysiology : official journal of the International Organization of Psychophysiology2020 1233189770
Atlas55+: Brain Functional Atlas of Resting-State Networks for Late Adulthood.Doucet, Gaelle E; Labache, Loic; Thompson, Paul M; Joliot, Marc; Frangou, Sophia; Alzheimer’s Disease Neuroimaging InitiativeCerebral cortex (New York, N.Y. : 1991)2021 02 0533188411
Dense sampling of bird diversity increases power of comparative genomics.Feng, Shaohong; Stiller, Josefin; Deng, Yuan; Armstrong, Joel; Fang, Qi; Reeve, Andrew Hart; Xie, Duo; Chen, Guangji; Guo, Chunxue; Faircloth, Brant C; Petersen, Bent; Wang, Zongji; Zhou, Qi; Diekhans, Mark; Chen, Wanjun; Andreu-Sánchez, Sergio; Margaryan, Ashot; Howard, Jason Travis; Parent, Carole; Pacheco, George; Sinding, Mikkel-Holger S; Puetz, Lara; Cavill, Emily; Ribeiro, Ângela M; Eckhart, Leopold; Fjeldså, Jon; Hosner, Peter A; Brumfield, Robb T; Christidis, Les; Bertelsen, Mads F; Sicheritz-Ponten, Thomas; Tietze, Dieter Thomas; Robertson, Bruce C; Song, Gang; Borgia, Gerald; Claramunt, Santiago; Lovette, Irby J; Cowen, Saul J; Njoroge, Peter; Dumbacher, John Philip; Ryder, Oliver A; Fuchs, Jérôme; Bunce, Michael; Burt, David W; Cracraft, Joel; Meng, Guanliang; Hackett, Shannon J; Ryan, Peter G; Jønsson, Knud Andreas; Jamieson, Ian G; da Fonseca, Rute R; Braun, Edward L; Houde, Peter; Mirarab, Siavash; Suh, Alexander; Hansson, Bengt; Ponnikas, Suvi; Sigeman, Hanna; Stervander, Martin; Frandsen, Paul B; van der Zwan, Henriette; van der Sluis, Rencia; Visser, Carina; Balakrishnan, Christopher N; Clark, Andrew G; Fitzpatrick, John W; Bowman, Reed; Chen, Nancy; Cloutier, Alison; Sackton, Timothy B; Edwards, Scott V; Foote, Dustin J; Shakya, Subir B; Sheldon, Frederick H; Vignal, Alain; Soares, André E R; Shapiro, Beth; González-Solís, Jacob; Ferrer-Obiol, Joan; Rozas, Julio; Riutort, Marta; Tigano, Anna; Friesen, Vicki; Dalén, Love; Urrutia, Araxi O; Székely, Tamás; Liu, Yang; Campana, Michael G; Corvelo, André; Fleischer, Robert C; Rutherford, Kim M; Gemmell, Neil J; Dussex, Nicolas; Mouritsen, Henrik; Thiele, Nadine; Delmore, Kira; Liedvogel, Miriam; Franke, Andre; Hoeppner, Marc P; Krone, Oliver; Fudickar, Adam M; Milá, Borja; Ketterson, Ellen D; Fidler, Andrew Eric; Friis, Guillermo; Parody-Merino, Ángela M; Battley, Phil F; Cox, Murray P; Lima, Nicholas Costa Barroso; Prosdocimi, Francisco; Parchman, Thomas Lee; Schlinger, Barney A; Loiselle, Bette A; Blake, John G; Lim, Haw Chuan; Day, Lainy B; Fuxjager, Matthew J; Baldwin, Maude W; Braun, Michael J; Wirthlin, Morgan; Dikow, Rebecca B; Ryder, T Brandt; Camenisch, Glauco; Keller, Lukas F; DaCosta, Jeffrey M; Hauber, Mark E; Louder, Matthew I M; Witt, Christopher C; McGuire, Jimmy A; Mudge, Joann; Megna, Libby C; Carling, Matthew D; Wang, Biao; Taylor, Scott A; Del-Rio, Glaucia; Aleixo, Alexandre; Vasconcelos, Ana Tereza Ribeiro; Mello, Claudio V; Weir, Jason T; Haussler, David; Li, Qiye; Yang, Huanming; Wang, Jian; Lei, Fumin; Rahbek, Carsten; Gilbert, M Thomas P; Graves, Gary R; Jarvis, Erich D; Paten, Benedict; Zhang, GuojieNature2020 1133177665
Progressive Cactus is a multiple-genome aligner for the thousand-genome era.Armstrong, Joel; Hickey, Glenn; Diekhans, Mark; Fiddes, Ian T; Novak, Adam M; Deran, Alden; Fang, Qi; Xie, Duo; Feng, Shaohong; Stiller, Josefin; Genereux, Diane; Johnson, Jeremy; Marinescu, Voichita Dana; Alföldi, Jessica; Harris, Robert S; Lindblad-Toh, Kerstin; Haussler, David; Karlsson, Elinor; Jarvis, Erich D; Zhang, Guojie; Paten, BenedictNature.2020 11;33177663
COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database.Korn, Daniel; Bobrowski, Tesia; Li, Michael; Kebede, Yaphet; Wang, Patrick; Owen, Phillips; Vaidya, Gaurav; Muratov, Eugene; Chirkova, Rada; Bizon, Chris; Tropsha, AlexanderBioinformatics (Oxford, England)2021 05 0133175089
The effect of body mass index on hippocampal morphology and memory performance in late childhood and adolescence.Lynch, Kirsten M; Page, Kathleen A; Shi, Yonggang; Xiang, Anny H; Toga, Arthur W; Clark, Kristi AHippocampus.2020 Nov 11;33174346
Sex differences in viral entry protein expression, host responses to SARS-CoV-2, and in vitro responses to sex steroid hormone treatment in COVID-19.Sun, Mengying; Shankar, Rama; Ko, Meehyun; Chang, Christopher Daniel; Yeh, Shan-Ju; Li, Shilong; Liu, Ke; Zhou, Guoli; Xing, Jing; VanVelsen, Austin; VanVelsen, Tyler; Paithankar, Shreya; Feng, Benjamin Y; Young, Krista; Strug, Michael; Turco, Lauren; Wang, Zichen; Schadt, Eric; Chen, Rong; Li, Xiaohong; Oskotsky, Tomiko; Sirota, Marina; Glicksberg, Benjamin S; Nadkarni, Girish N; Moeser, Adam J; Li, Li; Kim, Seungtaek; Zhou, Jiayu; Chen, BinResearch square.2020 Nov 04;33173861
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project.Hoopmann, Michael R; Kusebauch, Ulrike; Palmblad, Magnus; Bandeira, Nuno; Shteynberg, David D; He, Lingjie; Xia, Bin; Stoychev, Stoyan H; Omenn, Gilbert S; Weintraub, Susan T; Moritz, Robert LJournal of proteome research2020 12 0433166149
ppmHR: A Privacy-protecting Tool to Fit Inverse Probability Weighted Cox Models in Multisite Studies.Shu, Di; Toh, SengweeEpidemiology (Cambridge, Mass.)2021 03 0133165009
Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data.Zong, Nansu; Stone, Daniel J; Sharma, Deepak K; Wen, Andrew; Wang, Chen; Yu, Yue; Huang, Ming; Liu, Sijia; Liu, Hongfang; Shi, Qian; Jiang, GuoqianInternational journal of medical informatics.2021 Jan;33160272
Learning to encode cellular responses to systematic perturbations with deep generative models.Xue, Yifan; Ding, Michael Q; Lu, XinghuaNPJ systems biology and applications.2020 11 06;33159077
Balancing Accuracy and Privacy in Federated Queries of Clinical Data Repositories: Algorithm Development and Validation.Yu, Yun William; Weber, Griffin MJournal of medical Internet research.2020 Nov 03;33141090
Linear mixed models with endogenous covariates: modeling sequential treatment effects with application to a mobile health study.Qian, Tianchen; Klasnja, Predrag; Murphy, Susan AStatistical science : a review journal of the Institute of Mathematical Statistics.2020;33132496
Staphylococcus aureus antimicrobial susceptibility trends and cluster detection in Vermont: 2012-2018.Stelling, John; Read, Jennifer S; Peters, Rob; Clark, Adam; Bokhari, Marissa; O'Brien, Thomas FExpert review of anti-infective therapy2021 0633131354
Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors.Manjunath, Mohith; Yan, Jialu; Youn, Yeoan; Drucker, Kristen L; Kollmeyer, Thomas M; McKinney, Andrew M; Zazubovich, Valter; Zhang, Yi; Costello, Joseph F; Eckel-Passow, Jeanette; Selvin, Paul R; Jenkins, Robert B; Song, Jun SNeuro-oncology2021 04 1233130899
Reconstruction of respiratory variation signals from fMRI data.Salas, Jorge A; Bayrak, Roza G; Huo, Yuankai; Chang, CatieNeuroImage2021 01 1533129927
Cardiac Imaging of Aortic Valve Area From 34 287 UK Biobank Participants Reveals Novel Genetic Associations and Shared Genetic Comorbidity With Multiple Disease Phenotypes.Córdova-Palomera, Aldo; Tcheandjieu, Catherine; Fries, Jason A; Varma, Paroma; Chen, Vincent S; Fiterau, Madalina; Xiao, Ke; Tejeda, Heliodoro; Keavney, Bernard D; Cordell, Heather J; Tanigawa, Yosuke; Venkataraman, Guhan; Rivas, Manuel A; Ré, Christopher; Ashley, Euan; Priest, James RCirculation. Genomic and precision medicine2020 1233125279
A large-scale genome-wide association study meta-analysis of cannabis use disorder.Johnson, Emma C; Demontis, Ditte; Thorgeirsson, Thorgeir E; Walters, Raymond K; Polimanti, Renato; Hatoum, Alexander S; Sanchez-Roige, Sandra; Paul, Sarah E; Wendt, Frank R; Clarke, Toni-Kim; Lai, Dongbing; Reginsson, Gunnar W; Zhou, Hang; He, June; Baranger, David A A; Gudbjartsson, Daniel F; Wedow, Robbee; Adkins, Daniel E; Adkins, Amy E; Alexander, Jeffry; Bacanu, Silviu-Alin; Bigdeli, Tim B; Boden, Joseph; Brown, Sandra A; Bucholz, Kathleen K; Bybjerg-Grauholm, Jonas; Corley, Robin P; Degenhardt, Louisa; Dick, Danielle M; Domingue, Benjamin W; Fox, Louis; Goate, Alison M; Gordon, Scott D; Hack, Laura M; Hancock, Dana B; Hartz, Sarah M; Hickie, Ian B; Hougaard, David M; Krauter, Kenneth; Lind, Penelope A; McClintick, Jeanette N; McQueen, Matthew B; Meyers, Jacquelyn L; Montgomery, Grant W; Mors, Ole; Mortensen, Preben B; Nordentoft, Merete; Pearson, John F; Peterson, Roseann E; Reynolds, Maureen D; Rice, John P; Runarsdottir, Valgerdur; Saccone, Nancy L; Sherva, Richard; Silberg, Judy L; Tarter, Ralph E; Tyrfingsson, Thorarinn; Wall, Tamara L; Webb, Bradley T; Werge, Thomas; Wetherill, Leah; Wright, Margaret J; Zellers, Stephanie; Adams, Mark J; Bierut, Laura J; Boardman, Jason D; Copeland, William E; Farrer, Lindsay A; Foroud, Tatiana M; Gillespie, Nathan A; Grucza, Richard A; Harris, Kathleen Mullan; Heath, Andrew C; Hesselbrock, Victor; Hewitt, John K; Hopfer, Christian J; Horwood, John; Iacono, William G; Johnson, Eric O; Kendler, Kenneth S; Kennedy, Martin A; Kranzler, Henry R; Madden, Pamela A F; Maes, Hermine H; Maher, Brion S; Martin, Nicholas G; McGue, Matthew; McIntosh, Andrew M; Medland, Sarah E; Nelson, Elliot C; Porjesz, Bernice; Riley, Brien P; Stallings, Michael C; Vanyukov, Michael M; Vrieze, Scott; Psychiatric Genomics Consortium Substance Use Disorders Workgroup; Davis, Lea K; Bogdan, Ryan; Gelernter, Joel; Edenberg, Howard J; Stefansson, Kari; Børglum, Anders D; Agrawal, ArpanaThe lancet. Psychiatry.2020 Dec;33096046
Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia.Moreau, Clara A; Urchs, Sebastian G W; Kuldeep, Kumar; Orban, Pierre; Schramm, Catherine; Dumas, Guillaume; Labbe, Aurélie; Huguet, Guillaume; Douard, Elise; Quirion, Pierre-Olivier; Lin, Amy; Kushan, Leila; Grot, Stephanie; Luck, David; Mendrek, Adrianna; Potvin, Stephane; Stip, Emmanuel; Bourgeron, Thomas; Evans, Alan C; Bearden, Carrie E; Bellec, Pierre; Jacquemont, SebastienNature communications.2020 10 19;33077750
In vivo hippocampal subfield volumes in bipolar disorder-A mega-analysis from The Enhancing Neuro Imaging Genetics through Meta-Analysis Bipolar Disorder Working Group.Haukvik, Unn K; Gurholt, Tiril P; Nerland, Stener; Elvsåshagen, Torbjørn; Akudjedu, Theophilus N; Alda, Martin; Alnaes, Dag; Alonso-Lana, Silvia; Bauer, Jochen; Baune, Bernhard T; Benedetti, Francesco; Berk, Michael; Bettella, Francesco; Bøen, Erlend; Bonnín, Caterina M; Brambilla, Paolo; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Dandash, Orwa; Dannlowski, Udo; Delvecchio, Giuseppe; Díaz-Zuluaga, Ana M; van Erp, Theo G M; Fatjó-Vilas, Mar; Foley, Sonya F; Förster, Katharina; Fullerton, Janice M; Goikolea, José M; Grotegerd, Dominik; Gruber, Oliver; Haarman, Bartholomeus C M; Haatveit, Beathe; Hajek, Tomas; Hallahan, Brian; Harris, Mathew; Hawkins, Emma L; Howells, Fleur M; Hülsmann, Carina; Jahanshad, Neda; Jørgensen, Kjetil N; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Kuplicki, Rayus; Lagerberg, Trine V; Lancaster, Thomas M; Lenroot, Rhoshel K; Lonning, Vera; López-Jaramillo, Carlos; Malt, Ulrik F; McDonald, Colm; McIntosh, Andrew M; McPhilemy, Genevieve; van der Meer, Dennis; Melle, Ingrid; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadi?, Igor; Oertel, Viola; Oldani, Lucio; Opel, Nils; Otaduy, Maria C G; Overs, Bronwyn J; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Radua, Joaquim; Rauer, Lisa; Redlich, Ronny; Repple, Jonathan; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salminen, Lauren E; Salvador, Raymond; Sarró, Salvador; Savitz, Jonathan; Schene, Aart H; Sim, Kang; Soeiro-de-Souza, Marcio G; Stäblein, Michael; Stein, Dan J; Stein, Frederike; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Veltman, Dick J; Vieta, Eduard; Waltemate, Lena; Westlye, Lars T; Whalley, Heather C; Sämann, Philipp G; Thompson, Paul M; Ching, Christopher R K; Andreassen, Ole A; Agartz, Ingrid; ENIGMA Bipolar Disorder Working GroupHuman brain mapping.2020 Oct 19;33073925
Regularization of Deep Neural Networks for EEG Seizure Detection to Mitigate Overfitting.Saqib, Mohammed; Zhu, Yuanda; Wang, May Dongmei; Beaulieu-Jones, BrettProceedings : Annual International Computer Software and Applications Conference. COMPSAC.2020 Jul;33073266
A high-stringency blueprint of the human proteome.Adhikari, Subash; Nice, Edouard C; Deutsch, Eric W; Lane, Lydie; Omenn, Gilbert S; Pennington, Stephen R; Paik, Young-Ki; Overall, Christopher M; Corrales, Fernando J; Cristea, Ileana M; Van Eyk, Jennifer E; Uhlén, Mathias; Lindskog, Cecilia; Chan, Daniel W; Bairoch, Amos; Waddington, James C; Justice, Joshua L; LaBaer, Joshua; Rodriguez, Henry; He, Fuchu; Kostrzewa, Markus; Ping, Peipei; Gundry, Rebekah L; Stewart, Peter; Srivastava, Sanjeeva; Srivastava, Sudhir; Nogueira, Fabio C S; Domont, Gilberto B; Vandenbrouck, Yves; Lam, Maggie P Y; Wennersten, Sara; Vizcaino, Juan Antonio; Wilkins, Marc; Schwenk, Jochen M; Lundberg, Emma; Bandeira, Nuno; Marko-Varga, Gyorgy; Weintraub, Susan T; Pineau, Charles; Kusebauch, Ulrike; Moritz, Robert L; Ahn, Seong Beom; Palmblad, Magnus; Snyder, Michael P; Aebersold, Ruedi; Baker, Mark SNature communications.2020 10 16;33067450
Association between childhood trauma and risk for obesity: a putative neurocognitive developmental pathway.Luo, Qiang; Zhang, Lingli; Huang, Chu-Chung; Zheng, Yan; Kanen, Jonathan W; Zhao, Qi; Yao, Ye; Quinlan, Erin B; Jia, Tianye; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Sahakian, Barbara J; Schumann, Gunter; Li, Fei; Feng, Jianfeng; Desrivières, Sylvane; Robbins, Trevor W; IMAGEN consortiumBMC medicine.2020 Oct 15;33054810
Greater male than female variability in regional brain structure across the lifespan.Wierenga, Lara M; Doucet, Gaelle E; Dima, Danai; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andreassen, Ole A; Anticevic, Alan; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; den Braber, Anouk; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Calhoun, Vince D; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Chaim-Avancini, Tiffany M; Ching, Christopher Rk; Clark, Vincent P; Conrod, Patricia J; Conzelmann, Annette; Crivello, Fabrice; Davey, Christopher G; Dickie, Erin W; Ehrlich, Stefan; Van't Ent, Dennis; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Fuentes-Claramonte, Paola; de Geus, Eco Jc; Di Giorgio, Annabella; Glahn, David C; Gotlib, Ian H; Grabe, Hans J; Gruber, Oliver; Gruner, Patricia; Gur, Raquel E; Gur, Ruben C; Gurholt, Tiril P; de Haan, Lieuwe; Haatveit, Beathe; Harrison, Ben J; Hartman, Catharina A; Hatton, Sean N; Heslenfeld, Dirk J; van den Heuvel, Odile A; Hickie, Ian B; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony C; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kalnin, Andrew J; Karolinska Schizophrenia Project (KaSP) Consortium; Klein, Marieke; Koenders, Laura; Kolskår, Knut K; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lazaro, Luisa; Lebedeva, Irina S; Lee, Phil H; Lochner, Christine; Machielsen, Marise Wj; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Brenna C; McDonald, Colm; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; van der Meer, Dennis; Menchón, José M; Naaijen, Jilly; Nyberg, Lars; Oosterlaan, Jaap; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Radua, Joaquim; Reif, Andreas; Richard, Geneviève; Roffman, Joshua L; Rosa, Pedro Gp; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Sim, Kang; Simmons, Andrew; Smoller, Jordan W; Sommer, Iris E; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Szeszko, Philip R; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Trollor, Julian N; Uhlmann, Anne; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Wang, Lei; Wang, Yang; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather C; Williams, Steven Cr; Wittfeld, Katharina; Wolf, Daniel H; Wright, Margaret J; Yoncheva, Yuliya N; Zanetti, Marcus V; Ziegler, Georg C; de Zubicaray, Greig I; Thompson, Paul M; Crone, Eveline A; Frangou, Sophia; Tamnes, Christian KHuman brain mapping.2020 Oct 12;33044802
Structural neuroimaging biomarkers for obsessive-compulsive disorder in the ENIGMA-OCD consortium: medication matters.Bruin, Willem B; Taylor, Luke; Thomas, Rajat M; Shock, Jonathan P; Zhutovsky, Paul; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Assogna, Francesca; Benedetti, Francesco; Beucke, Jan C; Boedhoe, Premika S W; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Brennan, Brian P; Buitelaar, Jan K; Calvo, Rosa; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Ely, Benjamin A; Feusner, Jamie D; Fitzgerald, Kate D; Fouche, Jean-Paul; Fridgeirsson, Egill A; Gruner, Patricia; Gürsel, Deniz A; Hauser, Tobias U; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Hu, Hao; Huyser, Chaim; Ivanov, Iliyan; James, Anthony; Jaspers-Fayer, Fern; Kathmann, Norbert; Kaufmann, Christian; Koch, Kathrin; Kuno, Masaru; Kvale, Gerd; Kwon, Jun Soo; Liu, Yanni; Lochner, Christine; Lázaro, Luisa; Marques, Paulo; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Moreira, Pedro S; Morer, Astrid; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika L; O'Neill, Joseph; Pariente, Jose C; Perriello, Chris; Piacentini, John; Piras, Fabrizio; Piras, Federica; Reddy, Y C Janardhan; Rus-Oswald, Oana G; Sakai, Yuki; Sato, João R; Schmaal, Lianne; Shimizu, Eiji; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Tolin, David F; Venkatasubramanian, Ganesan; Wang, Zhen; Yun, Je-Yeon; van Rooij, Daan; ENIGMA-OCD Working Group; Thompson, Paul M; van den Heuvel, Odile A; Stein, Dan J; van Wingen, Guido ATranslational psychiatry.2020 Oct 08;33033241
Intelligence, educational attainment, and brain structure in those at familial high-risk for schizophrenia or bipolar disorder.de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Alonso-Lana, Silvia; Bearden, Carrie E; Bertolino, Alessandro; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Canales-Rodríguez, Erick J; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Del Mar Bonnin, Caterina; Demro, Caroline; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fatjó-Vilas, Mar; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goikolea, Jose M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hidiroglu Ongun, Ceren; Hillegers, Manon H J; Houenou, Josselin; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Nabulsi, Leila; Newport, Jason; Olman, Cheryl A; van Os, Jim; Overs, Bronwyn J; Ozerdem, Aysegul; Pergola, Giulio; Picchioni, Marco M; Piguet, Camille; Pomarol-Clotet, Edith; Radua, Joaquim; Ramsay, Ian S; Richter, Anja; Roberts, Gloria; Salvador, Raymond; Saricicek Aydogan, Aybala; Sarró, Salvador; Schofield, Peter R; Simsek, Esma M; Simsek, Fatma; Soares, Jair C; Sponheim, Scott R; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Vieta, Eduard; Walter, Henrik; Weinberger, Daniel R; Whalley, Heather C; Wu, Mon-Ju; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; Thomopoulos, Sophia I; van Erp, Theo G M; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E MHuman brain mapping.2020 Oct 07;33027543
Substance Use Initiation, Particularly Alcohol, in Drug-Naive Adolescents: Possible Predictors and Consequences From a Large Cohort Naturalistic Study.Ivanov, Iliyan; Parvaz, Muhammad A; Velthorst, Eva; Shaik, Riaz B; Sandin, Sven; Gan, Gabriela; Spechler, Philip; Albaugh, Matthew D; Chaarani, Bader; Mackey, Scott; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; IMAGEN ConsortiumJournal of the American Academy of Child and Adolescent Psychiatry2021 0533011213
A semantic similarity based methodology for predicting protein-protein interactions: Evaluation with P53-interacting kinases.Cox, Steven; Dong, Xialan; Rai, Ruhi; Christopherson, Laura; Zheng, Weifan; Tropsha, Alexander; Schmitt, CharlesJournal of biomedical informatics2020 1133007449
Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective.Erdemir, Ahmet; Mulugeta, Lealem; Ku, Joy P; Drach, Andrew; Horner, Marc; Morrison, Tina M; Peng, Grace C Y; Vadigepalli, Rajanikanth; Lytton, William W; Myers Jr, Jerry GJournal of translational medicine.2020 09 29;32993675
Graph-based regularization for regression problems with alignment and highly-correlated designs.Li, Yuan; Mark, Benjamin; Raskutti, Garvesh; Willett, Rebecca; Song, Hyebin; Neiman, DavidSIAM journal on mathematics of data science.2020;32968717
Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.Hofer, Edith; Roshchupkin, Gennady V; Adams, Hieab H H; Knol, Maria J; Lin, Honghuang; Li, Shuo; Zare, Habil; Ahmad, Shahzad; Armstrong, Nicola J; Satizabal, Claudia L; Bernard, Manon; Bis, Joshua C; Gillespie, Nathan A; Luciano, Michelle; Mishra, Aniket; Scholz, Markus; Teumer, Alexander; Xia, Rui; Jian, Xueqiu; Mosley, Thomas H; Saba, Yasaman; Pirpamer, Lukas; Seiler, Stephan; Becker, James T; Carmichael, Owen; Rotter, Jerome I; Psaty, Bruce M; Lopez, Oscar L; Amin, Najaf; van der Lee, Sven J; Yang, Qiong; Himali, Jayandra J; Maillard, Pauline; Beiser, Alexa S; DeCarli, Charles; Karama, Sherif; Lewis, Lindsay; Harris, Mat; Bastin, Mark E; Deary, Ian J; Veronica Witte, A; Beyer, Frauke; Loeffler, Markus; Mather, Karen A; Schofield, Peter R; Thalamuthu, Anbupalam; Kwok, John B; Wright, Margaret J; Ames, David; Trollor, Julian; Jiang, Jiyang; Brodaty, Henry; Wen, Wei; Vernooij, Meike W; Hofman, Albert; Uitterlinden, André G; Niessen, Wiro J; Wittfeld, Katharina; Bülow, Robin; Völker, Uwe; Pausova, Zdenka; Bruce Pike, G; Maingault, Sophie; Crivello, Fabrice; Tzourio, Christophe; Amouyel, Philippe; Mazoyer, Bernard; Neale, Michael C; Franz, Carol E; Lyons, Michael J; Panizzon, Matthew S; Andreassen, Ole A; Dale, Anders M; Logue, Mark; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie N; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Pizzagalli, Fabrizio; Stein, Jason L; Thompson, Paul M; Medland, Sarah E; ENIGMA consortium; Sachdev, Perminder S; Kremen, William S; Wardlaw, Joanna M; Villringer, Arno; van Duijn, Cornelia M; Grabe, Hans J; Longstreth Jr, William T; Fornage, Myriam; Paus, Tomas; Debette, Stephanie; Arfan Ikram, M; Schmidt, Helena; Schmidt, Reinhold; Seshadri, SudhaNature communications.2020 09 22;32963231
PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments.Liu, Peng; Soukup, Alexandra A; Bresnick, Emery H; Dewey, Colin N; Kele?, SündüzGenome research.2020 Nov;32958497
The reliability and heritability of cortical folds and their genetic correlations across hemispheres.Pizzagalli, Fabrizio; Auzias, Guillaume; Yang, Qifan; Mathias, Samuel R; Faskowitz, Joshua; Boyd, Joshua D; Amini, Armand; Rivière, Denis; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Mangin, Jean-François; Glahn, David C; Blangero, John; Wright, Margaret J; Thompson, Paul M; Kochunov, Peter; Jahanshad, NedaCommunications biology.2020 Sep 15;32934300
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project.Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Cristea, Ileana M; Corrales, Fernando J; Lindskog, Cecilia; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen R; Snyder, Michael P; Baker, Mark S; Bandeira, Nuno; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric WJournal of proteome research.2020 Dec 04;32931287
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Choi, Meena; Carver, Jeremy; Chiva, Cristina; Tzouros, Manuel; Huang, Ting; Tsai, Tsung-Heng; Pullman, Benjamin; Bernhardt, Oliver M; Hüttenhain, Ruth; Teo, Guo Ci; Perez-Riverol, Yasset; Muntel, Jan; Müller, Maik; Goetze, Sandra; Pavlou, Maria; Verschueren, Erik; Wollscheid, Bernd; Nesvizhskii, Alexey I; Reiter, Lukas; Dunkley, Tom; Sabidó, Eduard; Bandeira, Nuno; Vitek, OlgaNature methods.2020 Oct;32929271
Suitability of administrative claims databases for bariatric surgery research - is the glass half-full or half-empty?Li, Xiaojuan; Lewis, Kristina H; Callaway, Katherine; Wharam, J Frank; Toh, SengweeBMC medical research methodology.2020 Sep 07;32894060
Ten simple rules for an inclusive summer coding program for non-computer-science undergraduates.Pennings, Pleuni; Banuelos, Mayra M; Catalan, Francisca L; Caudill, Victoria R; Chakalov, Bozhidar; Hernandez, Selena; Jones, Jeanice; Okorie, Chinomnso; Modrek, Sepideh; Rohlfs, Rori; Adelstein, NicolePLoS computational biology2020 0932881872
mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements.Bhamber, Ranjeet S; Jankevics, Andris; Deutsch, Eric W; Jones, Andrew R; Dowsey, Andrew WJournal of proteome research2021 Jan 0132864978
Neural Correlates of Adolescent Irritability and Its Comorbidity With Psychiatric Disorders.Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Spechler, Philip A; Potter, Alexandra; Banaschewski, Tobias; Millenet, Sabina; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Paus, Tomáš; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Stringaris, Argyris; Higgins, Stephen T; Schumann, Gunter; Garavan, Hugh; Althoff, Robert R; IMAGEN ConsortiumJournal of the American Academy of Child and Adolescent Psychiatry2020 1232860907
Compressive Big Data Analytics: An ensemble meta-algorithm for high-dimensional multisource datasets.Marino, Simeone; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Toga, Arthur W; Zhao, Lu; Jian, Yingsi; Yang, Yichen; Chen, Yehu; Wu, Qiucheng; Wild, Jessica; Cummings, Brandon; Dinov, Ivo DPloS one.2020;32857775
Feature-based molecular networking in the GNPS analysis environment.Nothias, Louis-Félix; Petras, Daniel; Schmid, Robin; Dührkop, Kai; Rainer, Johannes; Sarvepalli, Abinesh; Protsyuk, Ivan; Ernst, Madeleine; Tsugawa, Hiroshi; Fleischauer, Markus; Aicheler, Fabian; Aksenov, Alexander A; Alka, Oliver; Allard, Pierre-Marie; Barsch, Aiko; Cachet, Xavier; Caraballo-Rodriguez, Andres Mauricio; Da Silva, Ricardo R; Dang, Tam; Garg, Neha; Gauglitz, Julia M; Gurevich, Alexey; Isaac, Giorgis; Jarmusch, Alan K; Kameník, Zden?k; Kang, Kyo Bin; Kessler, Nikolas; Koester, Irina; Korf, Ansgar; Le Gouellec, Audrey; Ludwig, Marcus; Martin H, Christian; McCall, Laura-Isobel; McSayles, Jonathan; Meyer, Sven W; Mohimani, Hosein; Morsy, Mustafa; Moyne, Oriane; Neumann, Steffen; Neuweger, Heiko; Nguyen, Ngoc Hung; Nothias-Esposito, Melissa; Paolini, Julien; Phelan, Vanessa V; Pluskal, Tomá?; Quinn, Robert A; Rogers, Simon; Shrestha, Bindesh; Tripathi, Anupriya; van der Hooft, Justin J J; Vargas, Fernando; Weldon, Kelly C; Witting, Michael; Yang, Heejung; Zhang, Zheng; Zubeil, Florian; Kohlbacher, Oliver; Böcker, Sebastian; Alexandrov, Theodore; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter CNature methods.2020 09;32839597
Neuroimaging PheWAS (Phenome-Wide Association Study): A Free Cloud-Computing Platform for Big-Data, Brain-Wide Imaging Association Studies.Zhao, Lu; Batta, Ishaan; Matloff, William; O'Driscoll, Caroline; Hobel, Samuel; Toga, Arthur WNeuroinformatics2020 Aug 2132822005
DataRemix: a universal data transformation for optimal inference from gene expression datasets.Mao, Weiguang; Rahimikollu, Javad; Hausler, Ryan; Chikina, MariaBioinformatics (Oxford, England)2021 05 1732821903
A review investigating the relationship between cannabis use and adolescent cognitive functioning.Cyrus, Elena; Coudray, Makella S; Kiplagat, Sandra; Mariano, Yandra; Noel, Ines; Galea, Jerome T; Hadley, Dexter; Dévieux, Jessy G; Wagner, EricCurrent opinion in psychology2021 0432818908
White matter abnormalities across different epilepsy syndromes in adults: an ENIGMA-Epilepsy study.Hatton, Sean N; Huynh, Khoa H; Bonilha, Leonardo; Abela, Eugenio; Alhusaini, Saud; Altmann, Andre; Alvim, Marina K M; Balachandra, Akshara R; Bartolini, Emanuele; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris; Bargallo, Núria; Caldairou, Benoit; Caligiuri, Maria E; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Davoodi-Bojd, Esmaeil; Desmond, Patricia M; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Duncan, John S; Focke, Niels K; Foley, Sonya F; Gambardella, Antonio; Gleichgerrcht, Ezequiel; Guerrini, Renzo; Hamandi, Khalid; Ishikawa, Akari; Keller, Simon S; Kochunov, Peter V; Kotikalapudi, Raviteja; Kreilkamp, Barbara A K; Kwan, Patrick; Labate, Angelo; Langner, Soenke; Lenge, Matteo; Liu, Min; Lui, Elaine; Martin, Pascal; Mascalchi, Mario; Moreira, José C V; Morita-Sherman, Marcia E; O'Brien, Terence J; Pardoe, Heath R; Pariente, José C; Ribeiro, Letícia F; Richardson, Mark P; Rocha, Cristiane S; Rodríguez-Cruces, Raúl; Rosenow, Felix; Severino, Mariasavina; Sinclair, Benjamin; Soltanian-Zadeh, Hamid; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Tortora, Domenico; Velakoulis, Dennis; Vezzani, Annamaria; Vivash, Lucy; von Podewils, Felix; Vos, Sjoerd B; Weber, Bernd; Winston, Gavin P; Yasuda, Clarissa L; Zhu, Alyssa H; Thompson, Paul M; Whelan, Christopher D; Jahanshad, Neda; Sisodiya, Sanjay M; McDonald, Carrie RBrain : a journal of neurology.2020 Aug 01;32814957
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.Funk, Cory C; Casella, Alex M; Jung, Segun; Richards, Matthew A; Rodriguez, Alex; Shannon, Paul; Donovan-Maiye, Rory; Heavner, Ben; Chard, Kyle; Xiao, Yukai; Glusman, Gustavo; Ertekin-Taner, Nilufer; Golde, Todd E; Toga, Arthur; Hood, Leroy; Van Horn, John D; Kesselman, Carl; Foster, Ian; Madduri, Ravi; Price, Nathan D; Ament, Seth ACell reports.2020 Aug 18;32814038
Brain structure and habitat: Do the brains of our children tell us where they have been brought up?Kühn, Simone; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Meyer-Lindenberg, Andreas; Gallinat, JürgenNeuroImage2020 11 1532800993
The clinical utility of proton magnetic resonance spectroscopy in traumatic brain injury: recommendations from the ENIGMA MRS working group.Bartnik-Olson, Brenda L; Alger, Jeffry R; Babikian, Talin; Harris, Ashley D; Holshouser, Barbara; Kirov, Ivan I; Maudsley, Andrew A; Thompson, Paul M; Dennis, Emily L; Tate, David F; Wilde, Elisabeth A; Lin, AlexanderBrain imaging and behavior2020 Aug 1432797399
Exploration of PCORnet Data Resources for Assessing Use of Molecular-Guided Cancer Treatment.Carnahan, Ryan M; Waitman, Lemuel R; Charlton, Mary E; Schroeder, Mary C; Bossler, Aaron D; Campbell, W Scott; Campbell, James R; McDowell, Bradley D; Smith, Nicholas C; Gryzlak, Brian M; Chrischilles, Elizabeth AJCO clinical cancer informatics.2020 Aug;32795185
Deep neural networks enable quantitative movement analysis using single-camera videos.Kidzi?ski, ?ukasz; Yang, Bryan; Hicks, Jennifer L; Rajagopal, Apoorva; Delp, Scott L; Schwartz, Michael HNature communications.2020 08 13;32792511
A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia.Luo, Yuan; Eran, Alal; Palmer, Nathan; Avillach, Paul; Levy-Moonshine, Ami; Szolovits, Peter; Kohane, Isaac SNature medicine.2020 Sep;32778826
Cross-Modal Data Programming Enables Rapid Medical Machine Learning.Dunnmon, Jared A; Ratner, Alexander J; Saab, Khaled; Khandwala, Nishith; Markert, Matthew; Sagreiya, Hersh; Goldman, Roger; Lee-Messer, Christopher; Lungren, Matthew P; Rubin, Daniel L; Ré, ChristopherPatterns (New York, N.Y.).2020 May 08;32776018
ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants.Manjunath, Mohith; Zhang, Yi; Zhang, Shilu; Roy, Sushmita; Perez-Pinera, Pablo; Song, Jun SFrontiers in genetics.2020;32765587
Notifications to Improve Engagement With an Alcohol Reduction App: Protocol for a Micro-Randomized Trial.Bell, Lauren; Garnett, Claire; Qian, Tianchen; Perski, Olga; Potts, Henry W W; Williamson, ElizabethJMIR research protocols.2020 Aug 07;32763878
Performing Group Difference Testing on Graph Structured Data from GANs: Analysis and Applications in Neuroimaging.Dinh, Tuan Quang; Xiong, Yunyang; Huang, Zhichun; Vo, Tien; Mishra, Akshay; Kim, Won Hwa; Ravi, Sathya; Singh, VikasIEEE transactions on pattern analysis and machine intelligence2020 Aug 0732763848
Chemical Biology Toolkit for DCLK1 Reveals Connection to RNA Processing.Liu, Yan; Ferguson, Fleur M; Li, Lianbo; Kuljanin, Miljan; Mills, Caitlin E; Subramanian, Kartik; Harshbarger, Wayne; Gondi, Sudershan; Wang, Jinhua; Sorger, Peter K; Mancias, Joseph D; Gray, Nathanael S; Westover, Kenneth DCell chemical biology.2020 Aug 04;32755567
Behavioral Differences Between Subject Groups Identified Using Smart Homes and Change Point Detection.Sprint, Gina; Cook, Diane J; Fritz, RoschelleIEEE journal of biomedical and health informatics2021 Feb32750924
Ethical issues in global neuroimaging genetics collaborations.Palk, Andrea; Illes, Judy; Thompson, Paul M; Stein, Dan JNeuroImage.2020 11 01;32736000
Challenges and opportunities for neuroimaging in young patients with traumatic brain injury: a coordinated effort towards advancing discovery from the ENIGMA pediatric moderate/severe TBI group.Dennis, Emily L; Caeyenberghs, Karen; Asarnow, Robert F; Babikian, Talin; Bartnik-Olson, Brenda; Bigler, Erin D; Figaji, Anthony; Giza, Christopher C; Goodrich-Hunsaker, Naomi J; Hodges, Cooper B; Hoskinson, Kristen R; Königs, Marsh; Levin, Harvey S; Lindsey, Hannah M; Livny, Abigail; Max, Jeffrey E; Merkley, Tricia L; Newsome, Mary R; Olsen, Alexander; Ryan, Nicholas P; Spruiell, Matthew S; Suskauer, Stacy J; Thomopoulos, Sophia I; Ware, Ashley L; Watson, Christopher G; Wheeler, Anne L; Yeates, Keith Owen; Zielinski, Brandon A; Thompson, Paul M; Tate, David F; Wilde, Elisabeth ABrain imaging and behavior2020 Jul 3032734437
The ENIGMA sports injury working group:- an international collaboration to further our understanding of sport-related brain injury.Koerte, Inga K; Esopenko, Carrie; Hinds 2nd, Sidney R; Shenton, Martha E; Bonke, Elena M; Bazarian, Jeffrey J; Bickart, Kevin C; Bigler, Erin D; Bouix, Sylvain; Buckley, Thomas A; Choe, Meeryo C; Echlin, Paul S; Gill, Jessica; Giza, Christopher C; Hayes, Jasmeet; Hodges, Cooper B; Irimia, Andrei; Johnson, Paula K; Kenney, Kimbra; Levin, Harvey S; Lin, Alexander P; Lindsey, Hannah M; Lipton, Michael L; Max, Jeffrey E; Mayer, Andrew R; Meier, Timothy B; Merchant-Borna, Kian; Merkley, Tricia L; Mills, Brian D; Newsome, Mary R; Porfido, Tara; Stephens, Jaclyn A; Tartaglia, Maria Carmela; Ware, Ashley L; Zafonte, Ross D; Zeineh, Michael M; Thompson, Paul M; Tate, David F; Dennis, Emily L; Wilde, Elisabeth A; Baron, DavidBrain imaging and behavior.2020 Jul 27;32720179
iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.Kuo, Tsung-Ting; Jiang, Xiaoqian; Tang, Haixu; Wang, XiaoFeng; Bath, Tyler; Bu, Diyue; Wang, Lei; Harmanci, Arif; Zhang, Shaojie; Zhi, Degui; Sofia, Heidi J; Ohno-Machado, LucilaBMC medical genomics.2020 Jul 21;32693816
Using blockchain to log genome dataset access: efficient storage and query.Gürsoy, Gamze; Bjornson, Robert; Green, Molly E; Gerstein, MarkBMC medical genomics.2020 Jul 21;32693796
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.Shafin, Kishwar; Pesout, Trevor; Lorig-Roach, Ryan; Haukness, Marina; Olsen, Hugh E; Bosworth, Colleen; Armstrong, Joel; Tigyi, Kristof; Maurer, Nicholas; Koren, Sergey; Sedlazeck, Fritz J; Marschall, Tobias; Mayes, Simon; Costa, Vania; Zook, Justin M; Liu, Kelvin J; Kilburn, Duncan; Sorensen, Melanie; Munson, Katy M; Vollger, Mitchell R; Monlong, Jean; Garrison, Erik; Eichler, Evan E; Salama, Sofie; Haussler, David; Green, Richard E; Akeson, Mark; Phillippy, Adam; Miga, Karen H; Carnevali, Paolo; Jain, Miten; Paten, BenedictNature biotechnology.2020 09;32686750
Applying surface-based morphometry to study ventricular abnormalities of cognitively unimpaired subjects prior to clinically significant memory decline.Dong, Qunxi; Zhang, Wen; Stonnington, Cynthia M; Wu, Jianfeng; Gutman, Boris A; Chen, Kewei; Su, Yi; Baxter, Leslie C; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, YalinNeuroImage. Clinical.2020;32683323
Learning from history: do not flatten the curve of antiviral research!Bobrowski, Tesia; Melo-Filho, Cleber C; Korn, Daniel; Alves, Vinicius M; Popov, Konstantin I; Auerbach, Scott; Schmitt, Charles; Moorman, Nathaniel J; Muratov, Eugene N; Tropsha, AlexanderDrug discovery today.2020 Jul 15;32679173
SCAM Detective: Accurate Predictor of Small, Colloidally Aggregating Molecules.Alves, Vinicius M; Capuzzi, Stephen J; Braga, Rodolpho C; Korn, Daniel; Hochuli, Joshua E; Bowler, Kyle H; Yasgar, Adam; Rai, Ganesha; Simeonov, Anton; Muratov, Eugene N; Zakharov, Alexey V; Tropsha, AlexanderJournal of chemical information and modeling2020 08 2432678597
Pred-Skin: A Web Portal for Accurate Prediction of Human Skin Sensitizers.Borba, Joyce V B; Braga, Rodolpho C; Alves, Vinicius M; Muratov, Eugene N; Kleinstreuer, Nicole; Tropsha, Alexander; Andrade, Carolina HortaChemical research in toxicology2021 02 1532673477
Age and morphology of posterior communicating artery aneurysms.Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, RoseScientific reports.2020 Jul 14;32665589
Spatial domain analysis predicts risk of colorectal cancer recurrence and infers associated tumor microenvironment networks.Uttam, Shikhar; Stern, Andrew M; Sevinsky, Christopher J; Furman, Samantha; Pullara, Filippo; Spagnolo, Daniel; Nguyen, Luong; Gough, Albert; Ginty, Fiona; Lansing Taylor, D; Chakra Chennubhotla, SNature communications.2020 07 14;32665557
Telomere-to-telomere assembly of a complete human X chromosome.Miga, Karen H; Koren, Sergey; Rhie, Arang; Vollger, Mitchell R; Gershman, Ariel; Bzikadze, Andrey; Brooks, Shelise; Howe, Edmund; Porubsky, David; Logsdon, Glennis A; Schneider, Valerie A; Potapova, Tamara; Wood, Jonathan; Chow, William; Armstrong, Joel; Nature.2020 09;32663838
Testing the effectiveness of physical activity advice delivered via text messaging vs. human phone advisors in a Latino population: The On The Move randomized controlled trial design and methods.King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Espinosa, Patricia Rodriguez; Garcia, Dulce; Hauser, Michelle; Done, Monica; Patel, Michele L; Parikh, Nina M; Corral, Cecilia; Ahn, David KContemporary clinical trials2020 0832659437
Privacy-preserving construction of generalized linear mixed model for biomedical computation.Zhu, Rui; Jiang, Chao; Wang, Xiaofeng; Wang, Shuang; Zheng, Hao; Tang, HaixuBioinformatics (Oxford, England).2020 Jul 01;32657380
Disruption and Compensation of Sulcation-based Covariance Networks in Neonatal Brain Growth after Perinatal Injury.Kim, Sharon Y; Liu, Mengting; Hong, Seok-Jun; Toga, Arthur W; Barkovich, A James; Xu, Duan; Kim, HosungCerebral cortex (New York, N.Y. : 1991)2020 11 0332656563
Superior breast cancer metastasis risk stratification using an epithelial-mesenchymal-amoeboid transition gene signature.Emad, Amin; Ray, Tania; Jensen, Tor W; Parat, Meera; Natrajan, Rachael; Sinha, Saurabh; Ray, Partha SBreast cancer research : BCR.2020 Jul 08;32641077
Discovery of Synergistic and Antagonistic Drug Combinations against SARS-CoV-2 In Vitro.Bobrowski, Tesia; Chen, Lu; Eastman, Richard T; Itkin, Zina; Shinn, Paul; Chen, Catherine; Guo, Hui; Zheng, Wei; Michael, Sam; Simeonov, Anton; Hall, Matthew D; Zakharov, Alexey V; Muratov, Eugene NbioRxiv : the preprint server for biology.2020 Jun 30;32637956
ENIGMA-anxiety working group: Rationale for and organization of large-scale neuroimaging studies of anxiety disorders.Bas-Hoogendam, Janna Marie; Groenewold, Nynke A; Aghajani, Moji; Freitag, Gabrielle F; Harrewijn, Anita; Hilbert, Kevin; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Veltman, Dick J; Winkler, Anderson M; Lueken, Ulrike; Pine, Daniel S; van der Wee, Nic J A; Stein, Dan JHuman brain mapping.2020 Jul 03;32618421
Physiological changes in sleep that affect fMRI inference.Duyn, Jeff H; Ozbay, Pinar S; Chang, Catie; Picchioni, DanteCurrent opinion in behavioral sciences.2020 Jun;32613032
COVID-KOP: Integrating Emerging COVID-19 Data with the ROBOKOP Database.Korn, Daniel; Bobrowski, Tesia; Li, Michael; Kebede, Yaphet; Wang, Patrick; Owen, Phillips; Vaidya, Gaurav; Muratov, Eugene; Chirkova, Rada; Bizon, Chris; Tropsha, AlexanderChemRxiv : the preprint server for chemistry.2020 Jun 18;32601612
The IMAGEN study: a decade of imaging genetics in adolescents.Mascarell Mari?i?, Lea; Walter, Henrik; Rosenthal, Annika; Ripke, Stephan; Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Itterman, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Whelan, Robert; Kaminski, Jakob; Schumann, Gunter; Heinz, Andreas; IMAGEN consortiumMolecular psychiatry.2020 Nov;32601453
Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts.Ding, Hongxu; Bailey, Andrew D; Jain, Miten; Olsen, Hugh; Paten, BenedictBioinformatics (Oxford, England).2020 Dec 08;32597959
Mega-analysis methods in ENIGMA: The experience of the generalized anxiety disorder working group.Zugman, André; Harrewijn, Anita; Cardinale, Elise M; Zwiebel, Hannah; Freitag, Gabrielle F; Werwath, Katy E; Bas-Hoogendam, Janna M; Groenewold, Nynke A; Aghajani, Moji; Hilbert, Kevin; Cardoner, Narcis; Porta-Casteràs, Daniel; Gosnell, Savannah; Salas, Ramiro; Blair, Karina S; Blair, James R; Hammoud, Mira Z; Milad, Mohammed; Burkhouse, Katie; Phan, K Luan; Schroeder, Heidi K; Strawn, Jeffrey R; Beesdo-Baum, Katja; Thomopoulos, Sophia I; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Nielsen, Jared A; Buckner, Randy; Smoller, Jordan W; Mwangi, Benson; Soares, Jair C; Wu, Mon-Ju; Zunta-Soares, Giovana B; Jackowski, Andrea P; Pan, Pedro M; Salum, Giovanni A; Assaf, Michal; Diefenbach, Gretchen J; Brambilla, Paolo; Maggioni, Eleonora; Hofmann, David; Straube, Thomas; Andreescu, Carmen; Berta, Rachel; Tamburo, Erica; Price, Rebecca; Manfro, Gisele G; Critchley, Hugo D; Makovac, Elena; Mancini, Matteo; Meeten, Frances; Ottaviani, Cristina; Agosta, Federica; Canu, Elisa; Cividini, Camilla; Filippi, Massimo; Kosti?, Milutin; Munjiza, Ana; Filippi, Courtney A; Leibenluft, Ellen; Alberton, Bianca A V; Balderston, Nicholas L; Ernst, Monique; Grillon, Christian; Mujica-Parodi, Lilianne R; van Nieuwenhuizen, Helena; Fonzo, Gregory A; Paulus, Martin P; Stein, Murray B; Gur, Raquel E; Gur, Ruben C; Kaczkurkin, Antonia N; Larsen, Bart; Satterthwaite, Theodore D; Harper, Jennifer; Myers, Michael; Perino, Michael T; Yu, Qiongru; Sylvester, Chad M; Veltman, Dick J; Lueken, Ulrike; Van der Wee, Nic J A; Stein, Dan J; Jahanshad, Neda; Thompson, Paul M; Pine, Daniel S; Winkler, Anderson MHuman brain mapping.2020 Jun 29;32596977
Comparison of de-duplication methods used by WHO Global Antimicrobial Resistance Surveillance System (GLASS) and Japan Nosocomial Infections Surveillance (JANIS) in the surveillance of antimicrobial resistance.Kajihara, Toshiki; Yahara, Koji; Stelling, John; Eremin, Sergey Romualdovich; Tornimbene, Barbara; Thamlikitkul, Visanu; Hirabayashi, Aki; Anzai, Eiko; Wakai, Satoyo; Matsunaga, Nobuaki; Hayakawa, Kayoko; Ohmagari, Norio; Sugai, Motoyuki; Shibayama, KeigoPloS one.2020;32589639
Surveillance of antimicrobial resistance and evolving microbial populations in Vermont: 2011-2018.Stelling, John; Read, Jennifer S; Fritch, William; O'Brien, Thomas F; Peters, Rob; Clark, Adam; Bokhari, Marissa; Lion, Mattia; Katwa, Parisha; Kelso, PatsyExpert review of anti-infective therapy.2020 Oct;32552054
Wearable microPosters.Lee, James; Sternberg, PaulmicroPublication biology.2019 Nov 26;32550402
Directed remodeling of the mouse gut microbiome inhibits the development of atherosclerosis.Chen, Poshen B; Black, Audrey S; Sobel, Adam L; Zhao, Yannan; Mukherjee, Purba; Molparia, Bhuvan; Moore, Nina E; Aleman Muench, German R; Wu, Jiejun; Chen, Weixuan; Pinto, Antonio F M; Maryanoff, Bruce E; Saghatelian, Alan; Soroosh, Pejman; Torkamani, Ali; Leman, Luke J; Ghadiri, M RezaNature biotechnology.2020 Jun 15;32541956
Subcortical Brain Volume, Regional Cortical Thickness, and Cortical Surface Area Across Disorders: Findings From the ENIGMA ADHD, ASD, and OCD Working Groups.Boedhoe, Premika S W (see original citation for additional authors)The American journal of psychiatry2020 09 0132539527
SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins.Chen, Fan; Kele?, SündüzGenome biology.2020 06 12;32532357
Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold.Ferguson, Fleur M; Liu, Yan; Harshbarger, Wayne; Huang, Ling; Wang, Jinhua; Deng, Xianming; Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander; Muthuswamy, Senthil; Westover, Kenneth D; Gray, Nathanael SJournal of medicinal chemistry2020 07 2332530623
Automated outbreak detection of hospital-associated pathogens: Value to infection prevention programs.Baker, Meghan A; Yokoe, Deborah S; Stelling, John; Kleinman, Ken; Kaganov, Rebecca E; Letourneau, Alyssa R; Varma, Neha; O'Brien, Thomas; Kulldorff, Martin; Babalola, Damilola; Barrett, Craig; Drees, Marci; Coady, Micaela H; Isaacs, Amanda; Platt, Richard; Huang, Susan S; CDC Prevention Epicenters ProgramInfection control and hospital epidemiology2020 0932519624
Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.Armstrong, Nicola J; Mather, Karen A; Sargurupremraj, Muralidharan; Knol, Maria J; Malik, Rainer; Satizabal, Claudia L; Yanek, Lisa R; Wen, Wei; Gudnason, Vilmundur G; Dueker, Nicole D; Elliott, Lloyd T; Hofer, Edith; Bis, Joshua; Jahanshad, Neda; Li, Shuo; Logue, Mark A; Luciano, Michelle; Scholz, Markus; Smith, Albert V; Trompet, Stella; Vojinovic, Dina; Xia, Rui; Alfaro-Almagro, Fidel; Ames, David; Amin, Najaf; Amouyel, Philippe; Beiser, Alexa S; Brodaty, Henry; Deary, Ian J; Fennema-Notestine, Christine; Gampawar, Piyush G; Gottesman, Rebecca; Griffanti, Ludovica; Jack Jr, Clifford R; Jenkinson, Mark; Jiang, Jiyang; Kral, Brian G; Kwok, John B; Lampe, Leonie; C M Liewald, David; Maillard, Pauline; Marchini, Jonathan; Bastin, Mark E; Mazoyer, Bernard; Pirpamer, Lukas; Rafael Romero, José; Roshchupkin, Gennady V; Schofield, Peter R; Schroeter, Matthias L; Stott, David J; Thalamuthu, Anbupalam; Trollor, Julian; Tzourio, Christophe; van der Grond, Jeroen; Vernooij, Meike W; Witte, Veronica A; Wright, Margaret J; Yang, Qiong; Morris, Zoe; Siggurdsson, Siggi; Psaty, Bruce; Villringer, Arno; Schmidt, Helena; Haberg, Asta K; van Duijn, Cornelia M; Jukema, J Wouter; Dichgans, Martin; Sacco, Ralph L; Wright, Clinton B; Kremen, William S; Becker, Lewis C; Thompson, Paul M; Mosley, Thomas H; Wardlaw, Joanna M; Ikram, M Arfan; Adams, Hieab H H; Seshadri, Sudha; Sachdev, Perminder S; Smith, Stephen M; Launer, Lenore; Longstreth, William; DeCarli, Charles; Schmidt, Reinhold; Fornage, Myriam; Debette, Stephanie; Nyquist, Paul AStroke.2020 Jul;32517579
A geometric framework for statistical analysis of trajectories with distinct temporal spans.Chakraborty, Rudrasis; Singh, Vikas; Adluru, Nagesh; Vemuri, Baba CProceedings. IEEE International Conference on Computer Vision.2017 Oct;32514257
Reversal of Infected Host Gene Expression Identifies Repurposed Drug Candidates for COVID-19.Xing, Jing; Shankar, Rama; Drelich, Aleksandra; Paithankar, Shreya; Chekalin, Eugene; Dexheimer, Thomas; Rajasekaran, Surender; Tseng, Chien-Te Kent; Chen, BinbioRxiv : the preprint server for biology.2020 Apr 09;32511305
Pre-operative gastrocnemius lengths in gait predict outcomes following gastrocnemius lengthening surgery in children with cerebral palsy.Rajagopal, Apoorva; Kidzi?ski, ?ukasz; McGlaughlin, Alec S; Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael HPloS one.2020;32502157
Distributed Regression Analysis Application in Large Distributed Data Networks: Analysis of Precision and Operational Performance.Her, Qoua; Malenfant, Jessica; Zhang, Zilu; Vilk, Yury; Young, Jessica; Tabano, David; Hamilton, Jack; Johnson, Ron; Raebel, Marsha; Boudreau, Denise; Toh, SengweeJMIR medical informatics.2020 Jun 04;32496200
Using Ethereum blockchain to store and query pharmacogenomics data via smart contracts.Gürsoy, Gamze; Brannon, Charlotte M; Gerstein, MarkBMC medical genomics.2020 06 01;32487214
The effects of motor modularity on performance, learning and generalizability in upper-extremity reaching: a computational analysis.Al Borno, Mazen; Hicks, Jennifer L; Delp, Scott LJournal of the Royal Society, Interface.2020 06;32486950
Macromolecular modeling and design in Rosetta: recent methods and frameworks.Leman, Julia Koehler; Weitzner, Brian D; Lewis, Steven M; Adolf-Bryfogle, Jared; Alam, Nawsad; Alford, Rebecca F; Aprahamian, Melanie; Baker, David; Barlow, Kyle A; Barth, Patrick; Basanta, Benjamin; Bender, Brian J; Blacklock, Kristin; Bonet, Jaume; Boyken, Scott E; Bradley, Phil; Bystroff, Chris; Conway, Patrick; Cooper, Seth; Correia, Bruno E; Coventry, Brian; Das, Rhiju; De Jong, René M; DiMaio, Frank; Dsilva, Lorna; Dunbrack, Roland; Ford, Alexander S; Frenz, Brandon; Fu, Darwin Y; Geniesse, Caleb; Goldschmidt, Lukasz; Gowthaman, Ragul; Gray, Jeffrey J; Gront, Dominik; Guffy, Sharon; Horowitz, Scott; Huang, Po-Ssu; Huber, Thomas; Jacobs, Tim M; Jeliazkov, Jeliazko R; Johnson, David K; Kappel, Kalli; Karanicolas, John; Khakzad, Hamed; Khar, Karen R; Khare, Sagar D; Khatib, Firas; Khramushin, Alisa; King, Indigo C; Kleffner, Robert; Koepnick, Brian; Kortemme, Tanja; Kuenze, Georg; Kuhlman, Brian; Kuroda, Daisuke; Labonte, Jason W; Lai, Jason K; Lapidoth, Gideon; Leaver-Fay, Andrew; Lindert, Steffen; Linsky, Thomas; London, Nir; Lubin, Joseph H; Lyskov, Sergey; Maguire, Jack; Malmström, Lars; Marcos, Enrique; Marcu, Orly; Marze, Nicholas A; Meiler, Jens; Moretti, Rocco; Mulligan, Vikram Khipple; Nerli, Santrupti; Norn, Christoffer; Ó'Conchúir, Shane; Ollikainen, Noah; Ovchinnikov, Sergey; Pacella, Michael S; Pan, Xingjie; Park, Hahnbeom; Pavlovicz, Ryan E; Pethe, Manasi; Pierce, Brian G; Pilla, Kala Bharath; Raveh, Barak; Renfrew, P Douglas; Burman, Shourya S Roy; Rubenstein, Aliza; Sauer, Marion F; Scheck, Andreas; Schief, William; Schueler-Furman, Ora; Sedan, Yuval; Sevy, Alexander M; Sgourakis, Nikolaos G; Shi, Lei; Siegel, Justin B; Silva, Daniel-Adriano; Smith, Shannon; Song, Yifan; Stein, Amelie; Szegedy, Maria; Teets, Frank D; Thyme, Summer B; Wang, Ray Yu-Ruei; Watkins, Andrew; Zimmerman, Lior; Bonneau, RichardNature methods.2020 07;32483333
Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines.Argimón, Silvia; Masim, Melissa A L; Gayeta, June M; Lagrada, Marietta L; Macaranas, Polle K V; Cohen, Victoria; Limas, Marilyn T; Espiritu, Holly O; Palarca, Janziel C; Chilam, Jeremiah; Jamoralin Jr, Manuel C; Villamin, Alfred S; Borlasa, Janice B; Olorosa, Agnettah M; Hernandez, Lara F T; Boehme, Karis D; Jeffrey, Benjamin; Abudahab, Khalil; Hufano, Charmian M; Sia, Sonia B; Stelling, John; Holden, Matthew T G; Aanensen, David M; Carlos, Celia CNature communications.2020 Jun 01;32483195
Cross-sectional and longitudinal associations of family income-to-needs ratio with cortical and subcortical brain volume in adolescent boys and girls.King, Lucy S; Dennis, Emily L; Humphreys, Kathryn L; Thompson, Paul M; Gotlib, Ian HDevelopmental cognitive neuroscience.2020 May 18;32479375
Developing a FHIR-based Framework for Phenome Wide Association Studies: A Case Study with A Pan-Cancer Cohort.Zong, Nansu; Sharma, Deepak K; Yu, Yue; Egan, Jan B; Davila, Jaime I; Wang, Chen; Jiang, GuoqianAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2020;32477698
ENIGMA MDD: seven years of global neuroimaging studies of major depression through worldwide data sharing.Schmaal, Lianne; Pozzi, Elena; C Ho, Tiffany; van Velzen, Laura S; Veer, Ilya M; Opel, Nils; Van Someren, Eus J W; Han, Laura K M; Aftanas, Lybomir; Aleman, André; Baune, Bernhard T; Berger, Klaus; Blanken, Tessa F; Capitão, Liliana; Couvy-Duchesne, Baptiste; R Cullen, Kathryn; Dannlowski, Udo; Davey, Christopher; Erwin-Grabner, Tracy; Evans, Jennifer; Frodl, Thomas; Fu, Cynthia H Y; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans J; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gutman, Boris A; Hall, Geoffrey B; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Hilland, Eva; Irungu, Benson; Jonassen, Rune; Kelly, Sinead; Kircher, Tilo; Klimes-Dougan, Bonnie; Krug, Axel; Landrø, Nils Inge; Lagopoulos, Jim; Leerssen, Jeanne; Li, Meng; Linden, David E J; MacMaster, Frank P; M McIntosh, Andrew; Mehler, David M A; Nenadi?, Igor; Penninx, Brenda W J H; Portella, Maria J; Reneman, Liesbeth; Rentería, Miguel E; Sacchet, Matthew D; G Sämann, Philipp; Schrantee, Anouk; Sim, Kang; Soares, Jair C; Stein, Dan J; Tozzi, Leonardo; van Der Wee, Nic J A; van Tol, Marie-José; Vermeiren, Robert; Vives-Gilabert, Yolanda; Walter, Henrik; Walter, Martin; Whalley, Heather C; Wittfeld, Katharina; Whittle, Sarah; Wright, Margaret J; Yang, Tony T; Zarate Jr, Carlos; Thomopoulos, Sophia I; Jahanshad, Neda; Thompson, Paul M; Veltman, Dick JTranslational psychiatry.2020 May 29;32472038
Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA.Radua, Joaquim; Vieta, Eduard; Shinohara, Russell; Kochunov, Peter; Quidé, Yann; Green, Melissa J; Weickert, Cynthia S; Weickert, Thomas; Bruggemann, Jason; Kircher, Tilo; Nenadi?, Igor; Cairns, Murray J; Seal, Marc; Schall, Ulrich; Henskens, Frans; Fullerton, Janice M; Mowry, Bryan; Pantelis, Christos; Lenroot, Rhoshel; Cropley, Vanessa; Loughland, Carmel; Scott, Rodney; Wolf, Daniel; Satterthwaite, Theodore D; Tan, Yunlong; Sim, Kang; Piras, Fabrizio; Spalletta, Gianfranco; Banaj, Nerisa; Pomarol-Clotet, Edith; Solanes, Aleix; Albajes-Eizagirre, Anton; Canales-Rodríguez, Erick J; Sarro, Salvador; Di Giorgio, Annabella; Bertolino, Alessandro; Stäblein, Michael; Oertel, Viola; Knöchel, Christian; Borgwardt, Stefan; du Plessis, Stefan; Yun, Je-Yeon; Kwon, Jun Soo; Dannlowski, Udo; Hahn, Tim; Grotegerd, Dominik; Alloza, Clara; Arango, Celso; Janssen, Joost; Díaz-Caneja, Covadonga; Jiang, Wenhao; Calhoun, Vince; Ehrlich, Stefan; Yang, Kun; Cascella, Nicola G; Takayanagi, Yoichiro; Sawa, Akira; Tomyshev, Alexander; Lebedeva, Irina; Kaleda, Vasily; Kirschner, Matthias; Hoschl, Cyril; Tomecek, David; Skoch, Antonin; van Amelsvoort, Therese; Bakker, Geor; James, Anthony; Preda, Adrian; Weideman, Andrea; Stein, Dan J; Howells, Fleur; Uhlmann, Anne; Temmingh, Henk; López-Jaramillo, Carlos; Díaz-Zuluaga, Ana; Fortea, Lydia; Martinez-Heras, Eloy; Solana, Elisabeth; Llufriu, Sara; Jahanshad, Neda; Thompson, Paul; Turner, Jessica; van Erp, Theo; ENIGMA Consortium collaboratorsNeuroImage.2020 Sep;32470572
The ENIGMA-Epilepsy working group: Mapping disease from large data sets.Sisodiya, Sanjay M; Whelan, Christopher D; Hatton, Sean N; Huynh, Khoa; Altmann, Andre; Ryten, Mina; Vezzani, Annamaria; Caligiuri, Maria Eugenia; Labate, Angelo; Gambardella, Antonio; Ives-Deliperi, Victoria; Meletti, Stefano; Munsell, Brent C; Bonilha, Leonardo; Tondelli, Manuela; Rebsamen, Michael; Rummel, Christian; Vaudano, Anna Elisabetta; Wiest, Roland; Balachandra, Akshara R; Bargalló, Núria; Bartolini, Emanuele; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris; Caldairou, Benoit; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Desmond, Patricia M; Domin, Martin; Duncan, John S; Focke, Niels K; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Jahanshad, Neda; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kowalczyk, Magdalena A; Kreilkamp, Barbara A K; Kwan, Patrick; Lariviere, Sara; Lenge, Matteo; Lopez, Seymour M; Martin, Pascal; Mascalchi, Mario; Moreira, José C V; Morita-Sherman, Marcia E; Pardoe, Heath R; Pariente, Jose C; Raviteja, Kotikalapudi; Rocha, Cristiane S; Rodríguez-Cruces, Raúl; Seeck, Margitta; Semmelroch, Mira K H G; Sinclair, Benjamin; Soltanian-Zadeh, Hamid; Stein, Dan J; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Thomopoulos, Sophia I; Velakoulis, Dennis; Vivash, Lucy; Weber, Bernd; Yasuda, Clarissa Lin; Zhang, Junsong; Thompson, Paul M; McDonald, Carrie R; ENIGMA Consortium Epilepsy Working GroupHuman brain mapping.2020 May 29;32468614
The effect of LRRK2 loss-of-function variants in humans.Whiffin, Nicola; Armean, Irina M; Kleinman, Aaron; Marshall, Jamie L; Minikel, Eric V; Goodrich, Julia K; Quaife, Nicholas M; Cole, Joanne B; Wang, Qingbo; Karczewski, Konrad J; Cummings, Beryl B; Francioli, Laurent; Laricchia, Kristen; Guan, Anna; Alipanahi, Babak; Morrison, Peter; Baptista, Marco A S; Merchant, Kalpana M; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Ware, James S; Havulinna, Aki S; Iliadou, Bozenna; Lee, Jung-Jin; Nadkarni, Girish N; Whiteman, Cole; 23andMe Research Team; Daly, Mark; Esko, Tõnu; Hultman, Christina; Loos, Ruth J F; Milani, Lili; Palotie, Aarno; Pato, Carlos; Pato, Michele; Saleheen, Danish; Sullivan, Patrick F; Alföldi, Jessica; Cannon, Paul; MacArthur, Daniel GNature medicine.2020 Jun;32461697
Transcript expression-aware annotation improves rare variant interpretation.Cummings, Beryl B; Karczewski, Konrad J; Kosmicki, Jack A; Seaby, Eleanor G; Watts, Nicholas A; Singer-Berk, Moriel; Mudge, Jonathan M; Karjalainen, Juha; Satterstrom, F Kyle; O'Donnell-Luria, Anne H; Poterba, Timothy; Seed, Cotton; Solomonson, Matthew; Alföldi, Jessica; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Daly, Mark J; MacArthur, Daniel GNature.2020 May;32461655
The mutational constraint spectrum quantified from variation in 141,456 humans.Karczewski, Konrad J; Francioli, Laurent C; Tiao, Grace; Cummings, Beryl B; Alföldi, Jessica; Wang, Qingbo; Collins, Ryan L; Laricchia, Kristen M; Ganna, Andrea; Birnbaum, Daniel P; Gauthier, Laura D; Brand, Harrison; Solomonson, Matthew; Watts, Nicholas A; Rhodes, Daniel; Singer-Berk, Moriel; England, Eleina M; Seaby, Eleanor G; Kosmicki, Jack A; Walters, Raymond K; Tashman, Katherine; Farjoun, Yossi; Banks, Eric; Poterba, Timothy; Wang, Arcturus; Seed, Cotton; Whiffin, Nicola; Chong, Jessica X; Samocha, Kaitlin E; Pierce-Hoffman, Emma; Zappala, Zachary; O'Donnell-Luria, Anne H; Minikel, Eric Vallabh; Weisburd, Ben; Lek, Monkol; Ware, James S; Vittal, Christopher; Armean, Irina M; Bergelson, Louis; Cibulskis, Kristian; Connolly, Kristen M; Covarrubias, Miguel; Donnelly, Stacey; Ferriera, Steven; Gabriel, Stacey; Gentry, Jeff; Gupta, Namrata; Jeandet, Thibault; Kaplan, Diane; Llanwarne, Christopher; Munshi, Ruchi; Novod, Sam; Petrillo, Nikelle; Roazen, David; Ruano-Rubio, Valentin; Saltzman, Andrea; Schleicher, Molly; Soto, Jose; Tibbetts, Kathleen; Tolonen, Charlotte; Wade, Gordon; Talkowski, Michael E; Genome Aggregation Database Consortium; Neale, Benjamin M; Daly, Mark J; MacArthur, Daniel GNature.2020 05;32461654
Evaluating drug targets through human loss-of-function genetic variation.Minikel, Eric Vallabh; Karczewski, Konrad J; Martin, Hilary C; Cummings, Beryl B; Whiffin, Nicola; Rhodes, Daniel; Alföldi, Jessica; Trembath, Richard C; van Heel, David A; Daly, Mark J; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Schreiber, Stuart L; MacArthur, Daniel GNature.2020 05;32461653
Characterising the loss-of-function impact of 5' untranslated region variants in 15,708 individuals.Whiffin, Nicola; Karczewski, Konrad J; Zhang, Xiaolei; Chothani, Sonia; Smith, Miriam J; Evans, D Gareth; Roberts, Angharad M; Quaife, Nicholas M; Schafer, Sebastian; Rackham, Owen; Alföldi, Jessica; O'Donnell-Luria, Anne H; Francioli, Laurent C; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Cook, Stuart A; Barton, Paul J R; MacArthur, Daniel G; Ware, James SNature communications.2020 05 27;32461616
Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes.Wang, Qingbo; Pierce-Hoffman, Emma; Cummings, Beryl B; Alföldi, Jessica; Francioli, Laurent C; Gauthier, Laura D; Hill, Andrew J; O'Donnell-Luria, Anne H; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Karczewski, Konrad J; MacArthur, Daniel GNature communications.2020 05 27;32461613
An Assessment of Environmental Health Measures in the Deepwater Horizon Research Consortia.Pan, Huaqin; Edwards, Stephen W; Ives, Cataia; Covert, Hannah; Harville, Emily W; Lichtveld, Maureen Y; Wickliffe, Jeffrey K; Hamilton, Carol MCurrent opinion in toxicology.2019 Aug;32457927
Pangenome Graphs.Eizenga, Jordan M; Novak, Adam M; Sibbesen, Jonas A; Heumos, Simon; Ghaffaari, Ali; Hickey, Glenn; Chang, Xian; Seaman, Josiah D; Rounthwaite, Robin; Ebler, Jana; Rautiainen, Mikko; Garg, Shilpa; Paten, Benedict; Marschall, Tobias; Sirén, Jouni; Garrison, ErikAnnual review of genomics and human genetics2020 08 3132453966
Linked patterns of biological and environmental covariation with brain structure in adolescence: a population-based longitudinal study.Modabbernia, Amirhossein; Reichenberg, Abraham; Ing, Alex; Moser, Dominik A; Doucet, Gaelle E; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth J; Becker, Andreas; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Garavan, Hugh; Gowland, Penny; Grigis, Antoine; Grimmer, Yvonne; Heinz, Andreas; Insensee, Corinna; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Millenet, Sabina; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Penttilä, Jani; Poustka, Luise; Smolka, Michael N; Stringaris, Argyris; van Noort, Betteke M; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Frangou, Sophia; IMAGEN ConsortiumMolecular psychiatry2020 May 2232444868
Cognitive and brain development is independently influenced by socioeconomic status and polygenic scores for educational attainment.Judd, Nicholas; Sauce, Bruno; Wiedenhoeft, John; Tromp, Jeshua; Chaarani, Bader; Schliep, Alexander; van Noort, Betteke; Penttilä, Jani; Grimmer, Yvonne; Insensee, Corinna; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Klingberg, TorkelProceedings of the National Academy of Sciences of the United States of America.2020 06 02;32430323
Machine learning on drug-specific data to predict small molecule teratogenicity.Challa, Anup P; Beam, Andrew L; Shen, Min; Peryea, Tyler; Lavieri, Robert R; Lippmann, Ethan S; Aronoff, David MReproductive toxicology (Elmsford, N.Y.).2020 Aug;32428651
Consortium neuroscience of attention deficit/hyperactivity disorder and autism spectrum disorder: The ENIGMA adventure.Hoogman, Martine; van Rooij, Daan; Klein, Marieke; Boedhoe, Premika; Ilioska, Iva; Li, Ting; Patel, Yash; Postema, Merel C; Zhang-James, Yanli; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Banaschewski, Tobias; Bau, Claiton H D; Behrmann, Marlene; Bellgrove, Mark A; Brandeis, Daniel; Brem, Silvia; Busatto, Geraldo F; Calderoni, Sara; Calvo, Rosa; Castellanos, Francisco X; Coghill, David; Conzelmann, Annette; Daly, Eileen; Deruelle, Christine; Dinstein, Ilan; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Epstein, Jeffery N; Fair, Damien A; Fitzgerald, Jacqueline; Freitag, Christine M; Frodl, Thomas; Gallagher, Louise; Grevet, Eugenio H; Haavik, Jan; Hoekstra, Pieter J; Janssen, Joost; Karkashadze, Georgii; King, Joseph A; Konrad, Kerstin; Kuntsi, Jonna; Lazaro, Luisa; Lerch, Jason P; Lesch, Klaus-Peter; Louza, Mario R; Luna, Beatriz; Mattos, Paulo; McGrath, Jane; Muratori, Filippo; Murphy, Clodagh; Nigg, Joel T; Oberwelland-Weiss, Eileen; O'Gorman Tuura, Ruth L; O'Hearn, Kirsten; Oosterlaan, Jaap; Parellada, Mara; Pauli, Paul; Plessen, Kerstin J; Ramos-Quiroga, J Antoni; Reif, Andreas; Reneman, Liesbeth; Retico, Alessandra; Rosa, Pedro G P; Rubia, Katya; Shaw, Philip; Silk, Tim J; Tamm, Leanne; Vilarroya, Oscar; Walitza, Susanne; Jahanshad, Neda; Faraone, Stephen V; Francks, Clyde; van den Heuvel, Odile A; Paus, Tomas; Thompson, Paul M; Buitelaar, Jan K; Franke, BarbaraHuman brain mapping.2020 May 18;32420680
A Natural Language Interface for Dissemination of Reproducible Biomedical Data Science.John, Rogers Jeffrey Leo; Patel, Jignesh M; Alexander, Andrew L; Singh, Vikas; Adluru, NageshMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.2018 Sep;32412016
Conditional Recurrent Flow: Conditional Generation of Longitudinal Samples with Applications to Neuroimaging.Hwang, Seong Jae; Tao, Zirui; Kim, Won Hwa; Singh, VikasProceedings. IEEE International Conference on Computer Vision.2019 Oct-Nov;32405276
Dilated Convolutional Neural Networks for Sequential Manifold-valued Data.Zhen, Xingjian; Chakraborty, Rudrasis; Vogt, Nicholas; Bendlin, Barbara B; Singh, VikasProceedings. IEEE International Conference on Computer Vision.2019 Oct-Nov;32405275
Sampling-free Uncertainty Estimation in Gated Recurrent Units with Applications to Normative Modeling in Neuroimaging.Hwang, Seong Jae; Mehta, Ronak R; Kim, Hyunwoo J; Johnson, Sterling C; Singh, VikasUncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence.2019 Jul;32405271
Goal-setting And Achievement In Activity Tracking Apps: A Case Study Of MyFitnessPal.Gordon, Mitchell L; Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2019 May;32368761
EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning.Kuo, Tsung-Ting; Gabriel, Rodney A; Cidambi, Krishna R; Ohno-Machado, LucilaJournal of the American Medical Informatics Association : JAMIA.2020 May 01;32364235
Engaging citizen scientists to build healthy park environments in Colombia.Rubio, María Alejandra; Triana, Camilo; King, Abby C; Rosas, Lisa G; Banchoff, Ann W; Rubiano, Oscar; Chrisinger, Benjamin W; Sarmiento, Olga LHealth promotion international2021 Mar 1232361761
QSAR without borders.Muratov, Eugene N; Bajorath, Jürgen; Sheridan, Robert P; Tetko, Igor V; Filimonov, Dmitry; Poroikov, Vladimir; Oprea, Tudor I; Baskin, Igor I; Varnek, Alexandre; Roitberg, Adrian; Isayev, Olexandr; Curtarolo, Stefano; Fourches, Denis; Cohen, Yoram; Aspuru-Guzik, Alan; Winkler, David A; Agrafiotis, Dimitris; Cherkasov, Artem; Tropsha, AlexanderChemical Society reviews2020 06 0732356548
Riemannian Variance Filtering: An Independent Filtering Scheme for Statistical Tests on Manifold-valued Data.Zheng, Ligang; Kim, Hyunwoo J; Adluru, Nagesh; Newton, Michael A; Singh, VikasConference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops.2017 Jul;32355573
The turning and barrier course reveals gait parameters for detecting freezing of gait and measuring the efficacy of deep brain stimulation.O'Day, Johanna; Syrkin-Nikolau, Judy; Anidi, Chioma; Kidzinski, Lukasz; Delp, Scott; Bronte-Stewart, HelenPloS one.2020;32348346
From a deep learning model back to the brain-Identifying regional predictors and their relation to aging.Levakov, Gidon; Rosenthal, Gideon; Shelef, Ilan; Raviv, Tammy Riklin; Avidan, GaliaHuman brain mapping.2020 Aug 15;32320123
Efficient Relative Attribute Learning using Graph Neural Networks.Meng, Zihang; Adluru, Nagesh; Kim, Hyunwoo J; Fung, Glenn; Singh, VikasComputer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision.2018 Sep;32318687
Neurobehavioural characterisation and stratification of reinforcement-related behaviour.Jia, Tianye; Ing, Alex; Quinlan, Erin Burke; Tay, Nicole; Luo, Qiang; Francesca, Biondo; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Feng, Jianfeng; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN ConsortiumNature human behaviour.2020 05;32313235
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study.Adekkanattu, Prakash; Jiang, Guoqian; Luo, Yuan; Kingsbury, Paul R; Xu, Zhenxing; Rasmussen, Luke V; Pacheco, Jennifer A; Kiefer, Richard C; Stone, Daniel J; Brandt, Pascal S; Yao, Liang; Zhong, Yizhen; Deng, Yu; Wang, Fei; Ancker, Jessica S; Campion, Thomas R; Pathak, JyotishmanAMIA ... Annual Symposium proceedings. AMIA Symposium.2019;32308812
Automated Classification of Radiographic Knee Osteoarthritis Severity Using Deep Neural Networks.Thomas, Kevin A; Kidziński, Łukasz; Halilaj, Eni; Fleming, Scott L; Venkataraman, Guhan R; Oei, Edwin H G; Gold, Garry E; Delp, Scott LRadiology. Artificial intelligence2020 Mar 1832280948
Region-specific sex differences in the hippocampus.van Eijk, Liza; Hansell, Narelle K; Strike, Lachlan T; Couvy-Duchesne, Baptiste; de Zubicaray, Greig I; Thompson, Paul M; McMahon, Katie L; Zietsch, Brendan P; Wright, Margaret JNeuroImage.2020 07 15;32278894
Parity is associated with cognitive function and brain age in both females and males.Ning, Kaida; Zhao, Lu; Franklin, Meredith; Matloff, Will; Batta, Ishaan; Arzouni, Nibal; Sun, Fengzhu; Toga, Arthur WScientific reports2020 04 0832269255
EIF3H Orchestrates Hippo Pathway-Mediated Oncogenesis via Catalytic Control of YAP Stability.Zhou, Zhuan; Zhou, Honghong; Ponzoni, Luca; Luo, Aiping; Zhu, Rui; He, Mingjing; Huang, Yi; Guan, Kun-Liang; Bahar, Ivet; Liu, Zhihua; Wan, YongCancer research.2020 Jun 15;32269044
G2SAT: Learning to Generate SAT Formulas.You, Jiaxuan; Wu, Haoze; Barrett, Clark; Ramanujan, Raghuram; Leskovec, JureAdvances in neural information processing systems.2019 Dec;32265581
GNNExplainer: Generating Explanations for Graph Neural Networks.Ying, Rex; Bourgeois, Dylan; You, Jiaxuan; Zitnik, Marinka; Leskovec, JureAdvances in neural information processing systems.2019 Dec;32265580
Optimizing Connectivity-Driven Brain Parcellation Using Ensemble Clustering.Kurmukov, Anvar; Mussabaeva, Ayagoz; Denisova, Yulia; Moyer, Daniel; Jahanshad, Neda; Thompson, Paul M; Gutman, Boris ABrain connectivity.2020 05;32264696
Hyperbolic Graph Convolutional Neural Networks.Chami, Ines; Ying, Rex; Ré, Christopher; Leskovec, JureAdvances in neural information processing systems.2019 Dec;32256024
Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study.Tu, Yanshuai; Mi, Liang; Zhang, Wen; Zhang, Haomeng; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Gu, Xianfeng; Wang, Yalin; Alzheimer?s Disease Neuroimaging InitiativeNeuroinformatics.2020 Apr 06;32253701
Scanner invariant representations for diffusion MRI harmonization.Moyer, Daniel; Ver Steeg, Greg; Tax, Chantal M W; Thompson, Paul MMagnetic resonance in medicine.2020 Apr 06;32250475
GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets.Gutiérrez-Sacristán, Alba; De Niz, Carlos; Kothari, Cartik; Kong, Sek Won; Mandl, Kenneth D; Avillach, PaulBriefings in bioinformatics2021 01 1832249310
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.Wagner, Alex H; Walsh, Brian; Mayfield, Georgia; Tamborero, David; Sonkin, Dmitriy; Krysiak, Kilannin; Deu-Pons, Jordi; Duren, Ryan P; Gao, Jianjiong; McMurry, Julie; Patterson, Sara; Del Vecchio Fitz, Catherine; Pitel, Beth A; Sezerman, Ozman U; Ellrott, Kyle; Warner, Jeremy L; Rieke, Damian T; Aittokallio, Tero; Cerami, Ethan; Ritter, Deborah I; Schriml, Lynn M; Freimuth, Robert R; Haendel, Melissa; Raca, Gordana; Madhavan, Subha; Baudis, Michael; Beckmann, Jacques S; Dienstmann, Rodrigo; Chakravarty, Debyani; Li, Xuan Shirley; Mockus, Susan; Elemento, Olivier; Schultz, Nikolaus; Lopez-Bigas, Nuria; Lawler, Mark; Goecks, Jeremy; Griffith, Malachi; Griffith, Obi L; Margolin, Adam A; Variant Interpretation for Cancer ConsortiumNature genetics.2020 04;32246132
Foot strike pattern during running alters muscle-tendon dynamics of the gastrocnemius and the soleus.Yong, Jennifer R; Dembia, Christopher L; Silder, Amy; Jackson, Rachel W; Fredericson, Michael; Delp, Scott LScientific reports.2020 Apr 03;32245985
Use of social media to assess the impact of equitable state policies on LGBTQ patient experiences: An exploratory study.Hswen, Yulin; Zhang, Amanda; Sewalk, Kara; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared BHealthcare (Amsterdam, Netherlands).2020 Jun;32241681
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments.Gonçalves, Rafael S; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark AThe semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference.2017 Oct;32219223
Scene Graph Prediction with Limited Labels.Chen, Vincent S; Varma, Paroma; Krishna, Ranjay; Bernstein, Michael; Ré, Christopher; Fei-Fei, LiProceedings. IEEE International Conference on Computer Vision.2019 Oct-Nov;32218709
The Relationship Between White Matter Microstructure and General Cognitive Ability in Patients With Schizophrenia and Healthy Participants in the ENIGMA Consortium.Holleran, Laurena; Kelly, Sinead; Alloza, Clara; Agartz, Ingrid; Andreassen, Ole A; Arango, Celso; Banaj, Nerisa; Calhoun, Vince; Cannon, Dara; Carr, Vaughan; Corvin, Aiden; Glahn, David C; Gur, Ruben; Hong, Elliot; Hoschl, Cyril; Howells, Fleur M; James, Anthony; Janssen, Joost; Kochunov, Peter; Lawrie, Stephen M; Liu, Jingyu; Martinez, Covadonga; McDonald, Colm; Morris, Derek; Mothersill, David; Pantelis, Christos; Piras, Fabrizio; Potkin, Steven; Rasser, Paul E; Roalf, David; Rowland, Laura; Satterthwaite, Theodore; Schall, Ulrich; Spalletta, Gianfranco; Spaniel, Filip; Stein, Dan J; Uhlmann, Anne; Voineskos, Aristotle; Zalesky, Andrew; van Erp, Theo G M; Turner, Jessica A; Deary, Ian J; Thompson, Paul M; Jahanshad, Neda; Donohoe, GaryThe American journal of psychiatry2020 06 0132212855
Subcortical shape alterations in major depressive disorder: Findings from the ENIGMA major depressive disorder working group.Ho, Tiffany C; Gutman, Boris; Pozzi, Elena; Grabe, Hans J; Hosten, Norbert; Wittfeld, Katharina; Völzke, Henry; Baune, Bernhard; Dannlowski, Udo; Förster, Katharina; Grotegerd, Dominik; Redlich, Ronny; Jansen, Andreas; Kircher, Tilo; Krug, Axel; Meinert, Susanne; Nenadic, Igor; Opel, Nils; Dinga, Richard; Veltman, Dick J; Schnell, Knut; Veer, Ilya; Walter, Henrik; Gotlib, Ian H; Sacchet, Matthew D; Aleman, André; Groenewold, Nynke A; Stein, Dan J; Li, Meng; Walter, Martin; Ching, Christopher R K; Jahanshad, Neda; Ragothaman, Anjanibhargavi; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Thompson, Paul M; Sämann, Philipp G; Schmaal, LianneHuman brain mapping.2020 Mar 21;32198905
ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries.Thompson, Paul M; Jahanshad, Neda; Ching, Christopher R K; Salminen, Lauren E; Thomopoulos, Sophia I; Bright, Joanna; Baune, Bernhard T; Bertolín, Sara; Bralten, Janita; Bruin, Willem B; Bülow, Robin; Chen, Jian; Chye, Yann; Dannlowski, Udo; de Kovel, Carolien G F; Donohoe, Gary; Eyler, Lisa T; Faraone, Stephen V; Favre, Pauline; Filippi, Courtney A; Frodl, Thomas; Garijo, Daniel; Gil, Yolanda; Grabe, Hans J; Grasby, Katrina L; Hajek, Tomas; Han, Laura K M; Hatton, Sean N; Hilbert, Kevin; Ho, Tiffany C; Holleran, Laurena; Homuth, Georg; Hosten, Norbert; Houenou, Josselin; Ivanov, Iliyan; Jia, Tianye; Kelly, Sinead; Klein, Marieke; Kwon, Jun Soo; Laansma, Max A; Leerssen, Jeanne; Lueken, Ulrike; Nunes, Abraham; Neill, Joseph O'; Opel, Nils; Piras, Fabrizio; Piras, Federica; Postema, Merel C; Pozzi, Elena; Shatokhina, Natalia; Soriano-Mas, Carles; Spalletta, Gianfranco; Sun, Daqiang; Teumer, Alexander; Tilot, Amanda K; Tozzi, Leonardo; van der Merwe, Celia; Van Someren, Eus J W; van Wingen, Guido A; Völzke, Henry; Walton, Esther; Wang, Lei; Winkler, Anderson M; Wittfeld, Katharina; Wright, Margaret J; Yun, Je-Yeon; Zhang, Guohao; Zhang-James, Yanli; Adhikari, Bhim M; Agartz, Ingrid; Aghajani, Moji; Aleman, André; Althoff, Robert R; Altmann, Andre; Andreassen, Ole A; Baron, David A; Bartnik-Olson, Brenda L; Marie Bas-Hoogendam, Janna; Baskin-Sommers, Arielle R; Bearden, Carrie E; Berner, Laura A; Boedhoe, Premika S W; Brouwer, Rachel M; Buitelaar, Jan K; Caeyenberghs, Karen; Cecil, Charlotte A M; Cohen, Ronald A; Cole, James H; Conrod, Patricia J; De Brito, Stephane A; de Zwarte, Sonja M C; Dennis, Emily L; Desrivieres, Sylvane; Dima, Danai; Ehrlich, Stefan; Esopenko, Carrie; Fairchild, Graeme; Fisher, Simon E; Fouche, Jean-Paul; Francks, Clyde; Frangou, Sophia; Franke, Barbara; Garavan, Hugh P; Glahn, David C; Groenewold, Nynke A; Gurholt, Tiril P; Gutman, Boris A; Hahn, Tim; Harding, Ian H; Hernaus, Dennis; Hibar, Derrek P; Hillary, Frank G; Hoogman, Martine; Hulshoff Pol, Hilleke E; Jalbrzikowski, Maria; Karkashadze, George A; Klapwijk, Eduard T; Knickmeyer, Rebecca C; Kochunov, Peter; Koerte, Inga K; Kong, Xiang-Zhen; Liew, Sook-Lei; Lin, Alexander P; Logue, Mark W; Luders, Eileen; Macciardi, Fabio; Mackey, Scott; Mayer, Andrew R; McDonald, Carrie R; McMahon, Agnes B; Medland, Sarah E; Modinos, Gemma; Morey, Rajendra A; Mueller, Sven C; Mukherjee, Pratik; Namazova-Baranova, Leyla; Nir, Talia M; Olsen, Alexander; Paschou, Peristera; Pine, Daniel S; Pizzagalli, Fabrizio; Rentería, Miguel E; Rohrer, Jonathan D; Sämann, Philipp G; Schmaal, Lianne; Schumann, Gunter; Shiroishi, Mark S; Sisodiya, Sanjay M; Smit, Dirk J A; Sønderby, Ida E; Stein, Dan J; Stein, Jason L; Tahmasian, Masoud; Tate, David F; Turner, Jessica A; van den Heuvel, Odile A; van der Wee, Nic J A; van der Werf, Ysbrand D; van Erp, Theo G M; van Haren, Neeltje E M; van Rooij, Daan; van Velzen, Laura S; Veer, Ilya M; Veltman, Dick J; Villalon-Reina, Julio E; Walter, Henrik; Whelan, Christopher D; Wilde, Elisabeth A; Zarei, Mojtaba; Zelman, Vladimir; ENIGMA ConsortiumTranslational psychiatry.2020 Mar 20;32198361
The genetic architecture of the human cerebral cortex.Grasby, Katrina L (see original citation for additional authors)Science (New York, N.Y.).2020 03 20;32193296
Wikidata as a knowledge graph for the life sciences.Waagmeester, Andra; Stupp, Gregory; Burgstaller-Muehlbacher, Sebastian; Good, Benjamin M; Griffith, Malachi; Griffith, Obi L; Hanspers, Kristina; Hermjakob, Henning; Hudson, Toby S; Hybiske, Kevin; Keating, Sarah M; Manske, Magnus; Mayers, Michael; Mietchen, Daniel; Mitraka, Elvira; Pico, Alexander R; Putman, Timothy; Riutta, Anders; Queralt-Rosinach, Nuria; Schriml, Lynn M; Shafee, Thomas; Slenter, Denise; Stephan, Ralf; Thornton, Katherine; Tsueng, Ginger; Tu, Roger; Ul-Hasan, Sabah; Willighagen, Egon; Wu, Chunlei; Su, Andrew IeLife.2020 Mar 17;32180547
FKBP5 haplotypes and PTSD modulate the resting-state brain activity in Han Chinese adults who lost their only child.Qi, Rongfeng; Luo, Yifeng; Zhang, Li; Weng, Yifei; Surento, Wesley; Jahanshad, Neda; Xu, Qiang; Yin, Yan; Li, Lingjiang; Cao, Zhihong; Thompson, Paul M; Lu, Guang MingTranslational psychiatry.2020 Mar 13;32170058
Mutation effect estimation on protein-protein interactions using deep contextualized representation learning.Zhou, Guangyu; Chen, Muhao; Ju, Chelsea J T; Wang, Zheng; Jiang, Jyun-Yu; Wang, WeiNAR genomics and bioinformatics2020 Jun32166223
Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization.Bravo, Rafael R; Baratchart, Etienne; West, Jeffrey; Schenck, Ryan O; Miller, Anna K; Gallaher, Jill; Gatenbee, Chandler D; Basanta, David; Robertson-Tessi, Mark; Anderson, Alexander R APLoS computational biology.2020 03;32155140
An overview of the first 5?years of the ENIGMA obsessive-compulsive disorder working group: The power of worldwide collaboration.van den Heuvel, Odile A; Boedhoe, Premika S W; Bertolin, Sara; Bruin, Willem B; Francks, Clyde; Ivanov, Iliyan; Jahanshad, Neda; Kong, Xiang-Zhen; Kwon, Jun Soo; O'Neill, Joseph; Paus, Tomas; Patel, Yash; Piras, Fabrizio; Schmaal, Lianne; Soriano-Mas, Carles; Spalletta, Gianfranco; van Wingen, Guido A; Yun, Je-Yeon; Vriend, Chris; Simpson, H Blair; van Rooij, Daan; Hoexter, Marcelo Q; Hoogman, Martine; Buitelaar, Jan K; Arnold, Paul; Beucke, Jan C; Benedetti, Francesco; Bollettini, Irene; Bose, Anushree; Brennan, Brian P; De Nadai, Alessandro S; Fitzgerald, Kate; Gruner, Patricia; Grünblatt, Edna; Hirano, Yoshiyuki; Huyser, Chaim; James, Anthony; Koch, Kathrin; Kvale, Gerd; Lazaro, Luisa; Lochner, Christine; Marsh, Rachel; Mataix-Cols, David; Morgado, Pedro; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika; Pittenger, Christopher; Reddy, Y C Janardhan; Sato, João R; Soreni, Noam; Stewart, S Evelyn; Taylor, Stephan F; Tolin, David; Thomopoulos, Sophia I; Veltman, Dick J; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; Thompson, Paul M; Stein, Dan J; ENIGMA-OCD working groupHuman brain mapping.2020 Mar 10;32154629
Resting-state ''physiological networks''.Chen, Jingyuan E; Lewis, Laura D; Chang, Catie; Tian, Qiyuan; Fultz, Nina E; Ohringer, Ned A; Rosen, Bruce R; Polimeni, Jonathan RNeuroImage.2020 Jun;32145437
Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records.Zong, Nansu; Wen, Andrew; Stone, Daniel J; Sharma, Deepak K; Wang, Chen; Yu, Yue; Liu, Hongfang; Shi, Qian; Jiang, GuoqianJCO clinical cancer informatics.2020 03;32134686
Educational attainment polygenic scores are associated with cortical total surface area and regions important for language and memory.Mitchell, Brittany L; Cuéllar-Partida, Gabriel; Grasby, Katrina L; Campos, Adrian I; Strike, Lachlan T; Hwang, Liang-Dar; Okbay, Aysu; Thompson, Paul M; Medland, Sarah E; Martin, Nicholas G; Wright, Margaret J; Rentería, Miguel ENeuroImage.2020 05 15;32126298
Modernizing the Methods and Analytics Curricula for Health Science Doctoral Programs.Dinov, Ivo DFrontiers in public health.2020;32117857
Semantic concept schema of the linear mixed model of experimental observations.?wiek-Kupczy?ska, Hanna; Filipiak, Katarzyna; Markiewicz, Augustyn; Rocca-Serra, Philippe; Gonzalez-Beltran, Alejandra N; Sansone, Susanna-Assunta; Millet, Emilie J; van Eeuwijk, Fred; ?awrynowicz, Agnieszka; Krajewski, Pawe?Scientific data.2020 02 27;32109232
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format.Eng, Jimmy K; Deutsch, Eric WProteomics.2020 Feb 27;32106352
BrainAGE and regional volumetric analysis of a Buddhist monk: a longitudinal MRI case study.Adluru, Nagesh; Korponay, Cole H; Norton, Derek L; Goldman, Robin I; Davidson, Richard JNeurocase.2020 04;32100616
Anastrozole has an Association between Degree of Estrogen Suppression and Outcomes in Early Breast Cancer and is a Ligand for Estrogen Receptor ?.Ingle, James N; Cairns, Junmei; Suman, Vera J; Shepherd, Lois E; Fasching, Peter A; Hoskin, Tanya L; Singh, Ravinder J; Desta, Zeruesenay; Kalari, Krishna R; Ellis, Matthew J; Goss, Paul E; Chen, Bingshu E; Volz, Bernhard; Barman, Poulami; Carlson, Erin E; Haddad, Tufia; Goetz, Matthew P; Goodnature, Barbara; Cuellar, Matthew E; Walters, Michael A; Correia, Cristina; Kaufmann, Scott H; Weinshilboum, Richard M; Wang, LieweiClinical cancer research : an official journal of the American Association for Cancer Research.2020 Jun 15;32098767
Bayesian Framework for Detecting Gene Expression Outliers in Individual Samples.Vivian, John; Eizenga, Jordan M; Beale, Holly C; Vaske, Olena M; Paten, BenedictJCO clinical cancer informatics.2020 Feb;32097024
Contribution of common and rare variants to bipolar disorder susceptibility in extended pedigrees from population isolates.Sul, Jae Hoon; Service, Susan K; Huang, Alden Y; Ramensky, Vasily; Hwang, Sun-Goo; Teshiba, Terri M; Park, YoungJun; Ori, Anil P S; Zhang, Zhongyang; Mullins, Niamh; Olde Loohuis, Loes M; Fears, Scott C; Araya, Carmen; Araya, Xinia; Spesny, Mitzi; Bejarano, Julio; Ramirez, Margarita; Castrillón, Gabriel; Gomez-Makhinson, Juliana; Lopez, Maria C; Montoya, Gabriel; Montoya, Claudia P; Aldana, Ileana; Escobar, Javier I; Ospina-Duque, Jorge; Kremeyer, Barbara; Bedoya, Gabriel; Ruiz-Linares, Andres; Cantor, Rita M; Molina, Julio; Coppola, Giovanni; Ophoff, Roel A; Macaya, Gabriel; Lopez-Jaramillo, Carlos; Reus, Victor; Bearden, Carrie E; Sabatti, Chiara; Freimer, Nelson BTranslational psychiatry.2020 Feb 24;32094344
Magnitude and timing of major white matter tract maturation from infancy through adolescence with NODDI.Lynch, Kirsten M; Cabeen, Ryan P; Toga, Arthur W; Clark, Kristi ANeuroImage.2020 May 15;32092432
sMRT: Multi-Resident Tracking in Smart Homes with Sensor Vectorization.Wang, Tinghui; Cook, Diane JIEEE transactions on pattern analysis and machine intelligence.2020 Feb 13;32070942
Deep Learning-driven research for drug discovery: Tackling Malaria.Neves, Bruno J; Braga, Rodolpho C; Alves, Vinicius M; Lima, Marília N N; Cassiano, Gustavo C; Muratov, Eugene N; Costa, Fabio T M; Andrade, Carolina HortaPLoS computational biology.2020 02;32069285
Developing a Suite of Online Learning Modules on the Components of Next-Generation Sequencing Projects.Wright, Robert AMedical reference services quarterly.2020 Jan-Mar;32069203
Small airways pathology in idiopathic pulmonary fibrosis: a retrospective cohort study.Verleden, Stijn E; Tanabe, Naoya; McDonough, John E; Vasilescu, Drago? M; Xu, Feng; Wuyts, Wim A; Piloni, Davide; De Sadeleer, Laurens; Willems, Stijn; Mai, Cindy; Hostens, Jeroen; Cooper, Joel D; Verbeken, Erik K; Verschakelen, Johny; Galban, Craig J; Van Raemdonck, Dirk E; Colby, Thomas V; Decramer, Marc; Verleden, Geert M; Kaminski, Naftali; Hackett, Tillie-Louise; Vanaudenaerde, Bart M; Hogg, James CThe Lancet. Respiratory medicine.2020 Jun;32061334
Genotyping structural variants in pangenome graphs using the vg toolkit.Hickey, Glenn; Heller, David; Monlong, Jean; Sibbesen, Jonas A; Sirén, Jouni; Eizenga, Jordan; Dawson, Eric T; Garrison, Erik; Novak, Adam M; Paten, BenedictGenome biology.2020 Feb 12;32051000
Mapping Subcortical Brain Alterations in 22q11.2 Deletion Syndrome: Effects of Deletion Size and Convergence With Idiopathic Neuropsychiatric Illness.Ching, Christopher R K; Gutman, Boris A; Sun, Daqiang; Villalon Reina, Julio; Ragothaman, Anjanibhargavi; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Lin, Amy; Jonas, Rachel K; Kushan, Leila; Pacheco-Hansen, Laura; Vajdi, Ariana; Forsyth, Jennifer K; Jalbrzikowski, Maria; Bakker, Geor; van Amelsvoort, Therese; Antshel, Kevin M; Fremont, Wanda; Kates, Wendy R; Campbell, Linda E; McCabe, Kathryn L; Craig, Michael C; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan G; Murphy, Kieran C; Fiksinski, Ania; Koops, Sanne; Vorstman, Jacob; Crowley, T Blaine; Emanuel, Beverly S; Gur, Raquel E; McDonald-McGinn, Donna M; Roalf, David R; Ruparel, Kosha; Schmitt, J Eric; Zackai, Elaine H; Durdle, Courtney A; Goodrich-Hunsaker, Naomi J; Simon, Tony J; Bassett, Anne S; Butcher, Nancy J; Chow, Eva W C; Vila-Rodriguez, Fidel; Cunningham, Adam; Doherty, Joanne; Linden, David E; Moss, Hayley; Owen, Michael J; van den Bree, Marianne; Crossley, Nicolas A; Repetto, Gabriela M; Thompson, Paul M; Bearden, Carrie EThe American journal of psychiatry.2020 07 01;32046535
The empirical replicability of task-based fMRI as a function of sample size.Bossier, Han; Roels, Sanne P; Seurinck, Ruth; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner Dipl-Psych, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Moerkerke, Beatrijs; IMAGEN ConsortiumNeuroImage.2020 05 15;32036019
Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data.Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Wang, Chen; Liu, Hongfang; Jiang, GuoqianJAMIA open.2019 Dec;32025655
Genetic contributors to risk of schizophrenia in the presence of a 22q11.2 deletion.Cleynen, Isabelle; Engchuan, Worrawat; Hestand, Matthew S; Heung, Tracy; Holleman, Aaron M; Johnston, H Richard; Monfeuga, Thomas; McDonald-McGinn, Donna M; Gur, Raquel E; Morrow, Bernice E; Swillen, Ann; Vorstman, Jacob A S; Bearden, Carrie E; Chow, Eva W C; van den Bree, Marianne; Emanuel, Beverly S; Vermeesch, Joris R; Warren, Stephen T; Owen, Michael J; Chopra, Pankaj; Cutler, David J; Duncan, Richard; Kotlar, Alex V; Mulle, Jennifer G; Voss, Anna J; Zwick, Michael E; Diacou, Alexander; Golden, Aaron; Guo, Tingwei; Lin, Jhih-Rong; Wang, Tao; Zhang, Zhengdong; Zhao, Yingjie; Marshall, Christian; Merico, Daniele; Jin, Andrea; Lilley, Brenna; Salmons, Harold I; Tran, Oanh; Holmans, Peter; Pardinas, Antonio; Walters, James T R; Demaerel, Wolfram; Boot, Erik; Butcher, Nancy J; Costain, Gregory A; Lowther, Chelsea; Evers, Rens; van Amelsvoort, Therese A M J; van Duin, Esther; Vingerhoets, Claudia; Breckpot, Jeroen; Devriendt, Koen; Vergaelen, Elfi; Vogels, Annick; Crowley, T Blaine; McGinn, Daniel E; Moss, Edward M; Sharkus, Robert J; Unolt, Marta; Zackai, Elaine H; Calkins, Monica E; Gallagher, Robert S; Gur, Ruben C; Tang, Sunny X; Fritsch, Rosemarie; Ornstein, Claudia; Repetto, Gabriela M; Breetvelt, Elemi; Duijff, Sasja N; Fiksinski, Ania; Moss, Hayley; Niarchou, Maria; Murphy, Kieran C; Prasad, Sarah E; Daly, Eileen M; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan G; Buzzanca, Antonio; Fabio, Fabio Di; Digilio, Maria C; Pontillo, Maria; Marino, Bruno; Vicari, Stefano; Coleman, Karlene; Cubells, Joseph F; Ousley, Opal Y; Carmel, Miri; Gothelf, Doron; Mekori-Domachevsky, Ehud; Michaelovsky, Elena; Weinberger, Ronnie; Weizman, Abraham; Kushan, Leila; Jalbrzikowski, Maria; Armando, Marco; Eliez, Stéphan; Sandini, Corrado; Schneider, Maude; Béna, Frédérique Sloan; Antshel, Kevin M; Fremont, Wanda; Kates, Wendy R; Belzeaux, Raoul; Busa, Tiffany; Philip, Nicole; Campbell, Linda E; McCabe, Kathryn L; Hooper, Stephen R; Schoch, Kelly; Shashi, Vandana; Simon, Tony J; Tassone, Flora; Arango, Celso; Fraguas, David; García-Miñaúr, Sixto; Morey-Canyelles, Jaume; Rosell, Jordi; Suñer, Damià H; Raventos-Simic, Jasna; International 22q11.2DS Brain and Behavior Consortium; Epstein, Michael P; Williams, Nigel M; Bassett, Anne SMolecular psychiatry.2020 Feb 03;32015465
Association of relative brain age with tobacco smoking, alcohol consumption, and genetic variants.Ning, Kaida; Zhao, Lu; Matloff, Will; Sun, Fengzhu; Toga, Arthur WScientific reports2020 01 3032001736
Genetic correlations between subcortical brain volumes and psychiatric disorders.Ohi, Kazutaka; Shimada, Takamitsu; Kataoka, Yuzuru; Yasuyama, Toshiki; Kawasaki, Yasuhiro; Shioiri, Toshiki; Thompson, Paul MThe British journal of psychiatry : the journal of mental science.2020 05;32000869
Decreased functional connectivity of hippocampal subregions and methylation of the NR3C1 gene in Han Chinese adults who lost their only child.Qi, Rongfeng; Luo, Yifeng; Zhang, Li; Weng, Yifei; Surento, Wesley; Xu, Qiang; Jahanshad, Neda; Li, Lingjiang; Cao, Zhihong; Lu, Guang Ming; Thompson, Paul MPsychological medicine2020 Jan 2731983347
Knowledge-guided analysis of ''omics'' data using the KnowEnG cloud platform.Blatti 3rd, Charles; Emad, Amin; Berry, Matthew J; Gatzke, Lisa; Epstein, Milt; Lanier, Daniel; Rizal, Pramod; Ge, Jing; Liao, Xiaoxia; Sobh, Omar; Lambert, Mike; Post, Corey S; Xiao, Jinfeng; Groves, Peter; Epstein, Aidan T; Chen, Xi; Srinivasan, Subhashini; Lehnert, Erik; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard M; Song, Jun S; Jongeneel, C Victor; Han, Jiawei; Ravaioli, Umberto; Sobh, Nahil; Bushell, Colleen B; Sinha, SaurabhPLoS biology.2020 01;31971940
Tissue-guided LASSO for prediction of clinical drug response using preclinical samples.Huang, Edward W; Bhope, Ameya; Lim, Jing; Sinha, Saurabh; Emad, AminPLoS computational biology.2020 01;31967990
Privacy-preserving model learning on a blockchain network-of-networks.Kuo, Tsung-Ting; Kim, Jihoon; Gabriel, Rodney AJournal of the American Medical Informatics Association : JAMIA.2020 Mar 01;31943009
Rare copy number variants in over 100,000 European ancestry subjects reveal multiple disease associations.Li, Yun Rose; Glessner, Joseph T; Coe, Bradley P; Li, Jin; Mohebnasab, Maede; Chang, Xiao; Connolly, John; Kao, Charlly; Wei, Zhi; Bradfield, Jonathan; Kim, Cecilia; Hou, Cuiping; Khan, Munir; Mentch, Frank; Qiu, Haijun; Bakay, Marina; Cardinale, Christopher; Lemma, Maria; Abrams, Debra; Bridglall-Jhingoor, Andrew; Behr, Meckenzie; Harrison, Shanell; Otieno, George; Thomas, Alexandria; Wang, Fengxiang; Chiavacci, Rosetta; Wu, Lawrence; Hadley, Dexter; Goldmuntz, Elizabeth; Elia, Josephine; Maris, John; Grundmeier, Robert; Devoto, Marcella; Keating, Brendan; March, Michael; Pellagrino, Renata; Grant, Struan F A; Sleiman, Patrick M A; Li, Mingyao; Eichler, Evan E; Hakonarson, HakonNature communications.2020 01 14;31937769
Sympathetic activity contributes to the fMRI signal.Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, JeffCommunications biology.2019 Nov 18;31925226
Ancestral Folate Promotes Neuronal Regeneration in Serial Generations of Progeny.Patel, Nirav J; Hogan, Kirk J; Rizk, Elias; Stewart, Krista; Madrid, Andy; Vadakkadath Meethal, Sivan; Alisch, Reid; Borth, Laura; Papale, Ligia A; Ondoma, Solomon; Gorges, Logan R; Weber, Kara; Lake, Wendell; Bauer, Andrew; Hariharan, Nithya; Kuehn, Thomas; Cook, Thomas; Keles, Sunduz; Newton, Michael A; Iskandar, Bermans JMolecular neurobiology.2020 Jan 10;31919777
BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization.Liang, Lifan; Zhu, Kunju; Lu, SongjianBioinformatics (Oxford, England)2020 07 0131913438
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data.Pratapa, Aditya; Jalihal, Amogh P; Law, Jeffrey N; Bharadwaj, Aditya; Murali, T MNature methods.2020 Feb;31907445
Machine and deep learning approaches for cancer drug repurposing.Issa, Naiem T; Stathias, Vasileios; Schürer, Stephan; Dakshanamurthy, SivanesanSeminars in cancer biology.2020 Jan 03;31904426
Brain Imaging Genomics: Integrated Analysis and Machine Learning.Shen, Li; Thompson, Paul MProceedings of the IEEE. Institute of Electrical and Electronics Engineers.2020 Jan;31902950
Impaired vigilance networks in temporal lobe epilepsy: Mechanisms and clinical implications.Englot, Dario J; Morgan, Victoria L; Chang, CatieEpilepsia.2020 Feb;31901182
Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma.Chen, Bin; Garmire, Lana; Calvisi, Diego F; Chua, Mei-Sze; Kelley, Robin K; Chen, XinNature reviews. Gastroenterology & hepatology.2020 Apr;31900465
Large-Scale Simultaneous Testing of Cross-Covariance Matrices with Applications to PheWAS.Cai, Tianxi; Cai, T Tony; Liao, Katherine; Liu, WeidongStatistica Sinica.2019 Apr;31889766
On the Downstream Performance of Compressed Word Embeddings.May, Avner; Zhang, Jian; Dao, Tri; Ré, ChristopherAdvances in neural information processing systems.2019 Dec;31885428
Slice-based Learning: A Programming Model for Residual Learning in Critical Data Slices.Chen, Vincent S; Wu, Sen; Weng, Zhenzhen; Ratner, Alexander; Ré, ChristopherAdvances in neural information processing systems.2019 Dec;31871391
A Geometric Framework for Feature Mappings in Multimodal Fusion of Brain Image Data.Zhang, Wen; Mi, Liang; Thompson, Paul M; Wang, YalinInformation processing in medical imaging : proceedings of the ... conference.2019 Jun;31871388
Prevalence of Inherited Mutations in Breast Cancer Predisposition Genes among Women in Uganda and Cameroon.Adedokun, Babatunde; Zheng, Yonglan; Ndom, Paul; Gakwaya, Antony; Makumbi, Timothy; Zhou, Alicia Y; Yoshimatsu, Toshio F; Rodriguez, Alex; Madduri, Ravi K; Foster, Ian T; Sallam, Aminah; Olopade, Olufunmilayo I; Huo, DezhengCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.2020 Feb;31871109
Analytic and Data Sharing Options in Real-World Multidatabase Studies of Comparative Effectiveness and Safety of Medical Products.Toh, SengweeClinical pharmacology and therapeutics.2019 Dec 23;31869442
Heterogeneous network embedding enabling accurate disease association predictions.Xiong, Yun; Guo, Mengjie; Ruan, Lu; Kong, Xiangnan; Tang, Chunlei; Zhu, Yangyong; Wang, WeiBMC medical genomics.2019 12 23;31865913
Altered white matter microstructural organization in posttraumatic stress disorder across 3047 adults: results from the PGC-ENIGMA PTSD consortium.Dennis, Emily L; Disner, Seth G; Fani, Negar; Salminen, Lauren E; Logue, Mark; Clarke, Emily K; Haswell, Courtney C; Averill, Christopher L; Baugh, Lee A; Bomyea, Jessica; Bruce, Steven E; Cha, Jiook; Choi, Kyle; Davenport, Nicholas D; Densmore, Maria; du Plessis, Stefan; Forster, Gina L; Frijling, Jessie L; Gonenc, Atilla; Gruber, Staci; Grupe, Daniel W; Guenette, Jeffrey P; Hayes, Jasmeet; Hofmann, David; Ipser, Jonathan; Jovanovic, Tanja; Kelly, Sinead; Kennis, Mitzy; Kinzel, Philipp; Koch, Saskia B J; Koerte, Inga; Koopowitz, Sheri; Korgaonkar, Mayuresh; Krystal, John; Lebois, Lauren A M; Li, Gen; Magnotta, Vincent A; Manthey, Antje; May, Geoff J; Menefee, Deleene S; Nawijn, Laura; Nelson, Steven M; Neufeld, Richard W J; Nitschke, Jack B; O'Doherty, Daniel; Peverill, Matthew; Ressler, Kerry J; Roos, Annerine; Sheridan, Margaret A; Sierk, Anika; Simmons, Alan; Simons, Raluca M; Simons, Jeffrey S; Stevens, Jennifer; Suarez-Jimenez, Benjamin; Sullivan, Danielle R; Théberge, Jean; Tran, Jana K; van den Heuvel, Leigh; van der Werff, Steven J A; van Rooij, Sanne J H; van Zuiden, Mirjam; Velez, Carmen; Verfaellie, Mieke; Vermeiren, Robert R J M; Wade, Benjamin S C; Wager, Tor; Walter, Henrik; Winternitz, Sherry; Wolff, Jonathan; York, Gerald; Zhu, Ye; Zhu, Xi; Abdallah, Chadi G; Bryant, Richard; Daniels, Judith K; Davidson, Richard J; Fercho, Kelene A; Franz, Carol; Geuze, Elbert; Gordon, Evan M; Kaufman, Milissa L; Kremen, William S; Lagopoulos, Jim; Lanius, Ruth A; Lyons, Michael J; McCauley, Stephen R; McGlinchey, Regina; McLaughlin, Katie A; Milberg, William; Neria, Yuval; Olff, Miranda; Seedat, Soraya; Shenton, Martha; Sponheim, Scott R; Stein, Dan J; Stein, Murray B; Straube, Thomas; Tate, David F; van der Wee, Nic J A; Veltman, Dick J; Wang, Li; Wilde, Elisabeth A; Thompson, Paul M; Kochunov, Peter; Jahanshad, Neda; Morey, Rajendra AMolecular psychiatry.2019 Dec 19;31857689
ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest.Li, Jiajin; Jew, Brandon; Zhan, Lingyu; Hwang, Sungoo; Coppola, Giovanni; Freimer, Nelson B; Sul, Jae HoonPLoS computational biology.2019 Dec;31851693
Association of Gray Matter and Personality Development With Increased Drunkenness Frequency During Adolescence.Robert, Gabriel H; Luo, Qiang; Yu, Tao; Chu, Congying; Ing, Alex; Jia, Tianye; Papadopoulos Orfanos, Dimitri; Burke-Quinlan, Erin; Desrivières, Sylvane; Ruggeri, Barbara; Spechler, Philip; Chaarani, Bader; Tay, Nicole; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Barker, Ted; Garavan, Hugh; Schumann, Gunter; IMAGEN ConsortiumJAMA psychiatry2020 04 0131851304
Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases.Salfati, Elias L; Spencer, Emily G; Topol, Sarah E; Muse, Evan D; Rueda, Manuel; Lucas, Jonathan R; Wagner, Glenn N; Campman, Steven; Topol, Eric J; Torkamani, AliGenome medicine.2019 12 17;31847883
Analysis of stimulus-induced brain dynamics during naturalistic paradigms.Simony, Erez; Chang, CatieNeuroImage.2019 Dec 13;31843711
Learning High-dimensional Generalized Linear Autoregressive Models.Hall, Eric C; Raskutti, Garvesh; Willett, Rebecca MIEEE transactions on information theory.2019 Apr;31839683
Research Themes and Trends in Ten Top-Ranked Nephrology Journals: A Text Mining Analysis.Zengul, Ferhat D; Lee, Timmy; Delen, Dursun; Almehmi, Ammar; Ivankova, Nataliya V; Mehta, Tapan; Topuz, KazimAmerican journal of nephrology.2020;31838480
Leveraging allelic imbalance to refine fine-mapping for eQTL studies.Zou, Jennifer; Hormozdiari, Farhad; Jew, Brandon; Castel, Stephane E; Lappalainen, Tuuli; Ernst, Jason; Sul, Jae Hoon; Eskin, EleazarPLoS genetics.2019 12;31834882
Engineered BRET-Based Biologic Light Sources Enable Spatiotemporal Control over Diverse Optogenetic Systems.Parag-Sharma, Kshitij; O'Banion, Colin P; Henry, Erin C; Musicant, Adele M; Cleveland, John L; Lawrence, David S; Amelio, Antonio LACS synthetic biology.2020 01 17;31834783
Cortical Microstructural Alterations in Mild Cognitive Impairment and Alzheimer's Disease Dementia.Vogt, Nicholas M; Hunt, Jack F; Adluru, Nagesh; Dean, Douglas C; Johnson, Sterling C; Asthana, Sanjay; Yu, John-Paul J; Alexander, Andrew L; Bendlin, Barbara BCerebral cortex (New York, N.Y. : 1991)2020 05 1431833550
Cortical Surfaces Mediate the Relationship Between Polygenic Scores for Intelligence and General Intelligence.Lett, Tristram A; Vogel, Bob O; Ripke, Stephan; Wackerhagen, Carolin; Erk, Susanne; Awasthi, Swapnil; Trubetskoy, Vassily; Brandl, Eva J; Mohnke, Sebastian; Veer, Ilya M; Nöthen, Markus M; Rietschel, Marcella; Degenhardt, Franziska; Romanczuk-Seiferth, Nina; Witt, Stephanie H; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Tost, Heike; Meyer-Lindenberg, Andreas; Heinz, Andreas; Walter, Henrik; IMAGEN consortiumCerebral cortex (New York, N.Y. : 1991).2020 04 14;31828294
Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics.Barry, Christopher; Schmitz, Matthew T; Argus, Cara; Bolin, Jennifer M; Probasco, Mitchell D; Leng, Ning; Duffin, Bret M; Steill, John; Swanson, Scott; McIntosh, Brian E; Stewart, Ron; Kendziorski, Christina; Thomson, James A; Bacher, RhondaPLoS computational biology.2019 12;31815944
Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets.Morrow, Alyssa Kramer; He, George Zhixuan; Nothaft, Frank Austin; Tu, Eric Tongching; Paschall, Justin; Yosef, Nir; Joseph, Anthony DouglasCell systems.2019 12 18;31812694
Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group.Jia, Tianye; Chu, Congying; Liu, Yun; van Dongen, Jenny; Papastergios, Evangelos; Armstrong, Nicola J; Bastin, Mark E; Carrillo-Roa, Tania; den Braber, Anouk; Harris, Mathew; Jansen, Rick; Liu, Jingyu; Luciano, Michelle; Ori, Anil P S; Roiz Santiañez, Roberto; Ruggeri, Barbara; Sarkisyan, Daniil; Shin, Jean; Sungeun, Kim; Tordesillas Gutiérrez, Diana; Van't Ent, Dennis; Ames, David; Artiges, Eric; Bakalkin, Georgy; Banaschewski, Tobias; Bokde, Arun L W; Brodaty, Henry; Bromberg, Uli; Brouwer, Rachel; Büchel, Christian; Burke Quinlan, Erin; Cahn, Wiepke; de Zubicaray, Greig I; Ehrlich, Stefan; Ekström, Tomas J; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hoare, Jacqueline; Ittermann, Bernd; Jahanshad, Neda; Jiang, Jiyang; Kwok, John B; Martin, Nicholas G; Martinot, Jean-Luc; Mather, Karen A; McMahon, Katie L; McRae, Allan F; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Sämann, Philipp G; Schofield, Peter R; Smolka, Michael N; Stein, Dan J; Strike, Lachlan T; Teeuw, Jalmar; Thalamuthu, Anbupalam; Trollor, Julian; Walter, Henrik; Wardlaw, Joanna M; Wen, Wei; Whelan, Robert; Apostolova, Liana G; Binder, Elisabeth B; Boomsma, Dorret I; Calhoun, Vince; Crespo-Facorro, Benedicto; Deary, Ian J; Hulshoff Pol, Hilleke; Ophoff, Roel A; Pausova, Zdenka; Sachdev, Perminder S; Saykin, Andrew; Wright, Margaret J; Thompson, Paul M; Schumann, Gunter; Desrivières, SylvaneMolecular psychiatry.2019 Dec 06;31811260
Privacy-protecting estimation of adjusted risk ratios using modified Poisson regression in multi-center studies.Shu, Di; Young, Jessica G; Toh, SengweeBMC medical research methodology.2019 Dec 05;31805872
Learning the Structure of a Nonstationary Vector Autoregression.Malinsky, Daniel; Spirtes, PeterProceedings of machine learning research.2019 Apr;31803862
Reactome and ORCID-fine-grained credit attribution for community curation.Viteri, Guilherme; Matthews, Lisa; Varusai, Thawfeek; Gillespie, Marc; Milacic, Marija; Cook, Justin; Weiser, Joel; Shorser, Solomon; Sidiropoulos, Konstantinos; Fabregat, Antonio; Haw, Robin; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, HenningDatabase : the journal of biological databases and curation.2019 01 01;31802127
Recursive Feature Elimination by Sensitivity Testing.Escanilla, Nicholas Sean; Hellerstein, Lisa; Kleiman, Ross; Kuang, Zhaobin; Shull, James D; Page, DavidProceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications.2018 Dec;31799516
Navigating ethical quandaries with the privacy dilemma of biomedical datasets.Gürsoy, Gamze; Doerr, Megan; Wilbanks, John; Wagner, Jennifer K; Tang, Haixu; Brenner, Steven EPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2020;31797643
From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer.Tao, Yifeng; Cai, Chunhui; Cohen, William W; Lu, XinghuaPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2020;31797588
Expertise and Engagement: Re-Designing Citizen Science Games With Players' Minds in Mind.Miller, Josh Aaron; Narayan, Uttkarsh; Hantsbarger, Matthew; Cooper, Seth; El-Nasr, Magy SeifFDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games.2019 Aug;31788674
A Kernel Theory of Modern Data Augmentation.Dao, Tri; Gu, Albert; Ratner, Alexander J; Smith, Virginia; De Sa, Christopher; Ré, ChristopherProceedings of machine learning research.2019 Jun;31777848
Learning Fast Algorithms for Linear Transforms Using Butterfly Factorizations.Dao, Tri; Gu, Albert; Eichhorn, Matthew; Rudra, Atri; Ré, ChristopherProceedings of machine learning research.2019 Jun;31777847
Low-Precision Random Fourier Features for Memory-Constrained Kernel Approximation.Zhang, Jian; May, Avner; Dao, Tri; Ré, ChristopherProceedings of machine learning research.2019 Apr;31777846
Snuba: Automating Weak Supervision to Label Training Data.Varma, Paroma; Ré, ChristopherProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2018 Nov;31777681
Snorkel DryBell: A Case Study in Deploying Weak Supervision at Industrial Scale.Bach, Stephen H; Rodriguez, Daniel; Liu, Yintao; Luo, Chong; Shao, Haidong; Xia, Cassandra; Sen, Souvik; Ratner, Alex; Hancock, Braden; Alborzi, Houman; Kuchhal, Rahul; Ré, Chris; Malkin, RobProceedings. ACM-Sigmod International Conference on Management of Data.2019 Jun-Jul;31777414
Designing Videogames to Crowdsource Accelerometer Data Annotation for Activity Recognition Research.Ponnada, Aditya; Cooper, Seth; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, StephenProceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play.2019 Oct;31768505
Sympathetic activity contributes to the fMRI signal.Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, JeffCommunications biology.2019;31754651
Subcortical surface morphometry in substance dependence: An ENIGMA addiction working group study.Chye, Yann; Mackey, Scott; Gutman, Boris A; Ching, Christopher R K; Batalla, Albert; Blaine, Sara; Brooks, Samantha; Caparelli, Elisabeth C; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Jahanshad, Neda; Kaag, Anne M; Korucuoglu, Ozlem; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Meda, Shashwath A; Momenan, Reza; Morales, Angelica; Orr, Catherine; Paulus, Martin P; Pearlson, Godfrey; Reneman, Liesbeth; Schmaal, Lianne; Sinha, Rajita; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Tang, Deborah; Uhlmann, Anne; van Holst, Ruth; Veltman, Dick J; Verdejo-Garcia, Antonio; Wiers, Reinout W; Yücel, Murat; Thompson, Paul M; Conrod, Patricia; Garavan, HughAddiction biology.2019 Nov 20;31746534
When can Multi-Site Datasets be Pooled for Regression? Hypothesis Tests, ?2-consistency and Neuroscience Applications.Zhou, Hao Henry; Zhang, Yilin; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, VikasProceedings of machine learning research.2017 Aug;31742253
Nanopore native RNA sequencing of a human poly(A) transcriptome.Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, WinstonNature methods2019 1231740818
Interaction effect of alcohol consumption and Alzheimer disease polygenic risk score on the brain cortical thickness of cognitively normal subjects.Matloff, William J; Zhao, Lu; Ning, Kaida; Conti, David V; Toga, Arthur WAlcohol (Fayetteville, N.Y.).2020 Jun;31734309
Building de novo cryo-electron microscopy structures collaboratively with citizen scientists.Khatib, Firas; Desfosses, Ambroise; Foldit Players; Koepnick, Brian; Flatten, Jeff; Popovi?, Zoran; Baker, David; Cooper, Seth; Gutsche, Irina; Horowitz, ScottPLoS biology.2019 11;31714936
Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data.Pomaznoy, Mikhail; Sethi, Ashu; Greenbaum, Jason; Peters, BjoernScientific reports.2019 Nov 08;31704962
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.Stathias, Vasileios; Turner, John; Koleti, Amar; Vidovic, Dusica; Cooper, Daniel; Fazel-Najafabadi, Mehdi; Pilarczyk, Marcin; Terryn, Raymond; Chung, Caty; Umeano, Afoma; Clarke, Daniel J B; Lachmann, Alexander; Evangelista, John Erol; Ma'ayan, Avi; Medvedovic, Mario; Schürer, Stephan CNucleic acids research.2020 01 08;31701147
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.Deutsch, Eric W; Bandeira, Nuno; Sharma, Vagisha; Perez-Riverol, Yasset; Carver, Jeremy J; Kundu, Deepti J; García-Seisdedos, David; Jarnuczak, Andrew F; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; Hermjakob, Henning; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan ANucleic acids research.2020 Jan 08;31686107
Identifying biological markers for improved precision medicine in psychiatry.Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN ConsortiumMolecular psychiatry.2020 Feb;31676814
Risk factors for development of aminoglycoside resistance among gram-negative rods.Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James AAmerican journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists.2019 10 30;31665763
Association of Copy Number Variation of the 15q11.2 BP1-BP2 Region With Cortical and Subcortical Morphology and Cognition.Writing Committee for the ENIGMA-CNV Working Group; van der Meer, Dennis; Sønderby, Ida E; Kaufmann, Tobias; Walters, G Bragi; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Micael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas B; Blangero, John; Boomsma, Dorret I; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Cahn, Wiepke; Calhoun, Vince D; Caspers, Svenja; Cavalleri, Gianpiero L; Ching, Christopher R K; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivieres, Sylvane; Di Forti, Marta; Doherty, Joanne L; Donohoe, Gary; Ehrlich, Stefan; Eising, Else; Espeseth, Thomas; Fisher, Simon E; Fladby, Tormod; Frei, Oleksandr; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans J; Groenewold, Nynke A; Gústafsson, Ómar; Haavik, Jan; Haberg, Asta K; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Hibar, Derrek P; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Ikeda, Masashi; Jacquemont, Sébastien; Jahanshad, Neda; Jockwitz, Christiane; Johansson, Stefan; Jönsson, Erik G; Kikuchi, Masataka; Knowles, Emma E M; Kwok, John B; Le Hellard, Stephanie; Linden, David E J; Liu, Jingyu; Lundervold, Arvid; Lundervold, Astri J; Martin, Nicholas G; Mather, Karen A; Mathias, Samuel R; McMahon, Katie L; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Moreau, Clara; Morris, Derek W; Mühleisen, Thomas W; Murray, Robin M; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel A; Owen, Michael J; Paus, Tomas; Pausova, Zdenka; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Quinlan, Erin Burke; Reinbold, Céline S; Reis Marques, Tiago; Rucker, James J H; Sachdev, Perminder S; Sando, Sigrid B; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Silva, Ana I; Sisodiya, Sanjay M; Steen, Vidar M; Stein, Dan J; Strike, Lachlan T; Tamnes, Christian K; Teumer, Alexander; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; Uhlmann, Anne; Úlfarsson, Magnús Ö; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Wen, Wei; Wittfeld, Katharina; Wright, Margaret J; Zayats, Tetyana; Dale, Anders M; Djurovic, Srdjan; Agartz, Ingrid; Westlye, Lars T; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul M; Andreassen, Ole AJAMA psychiatry2020 04 0131665216
A Novel Machine Learning Model Developed to Assist in Patient Selection for Outpatient Total Shoulder Arthroplasty.Biron, Dustin R; Sinha, Ishan; Kleiner, Justin E; Aluthge, Dilum P; Goodman, Avi D; Sarkar, I Neil; Cohen, Eric; Daniels, Alan HThe Journal of the American Academy of Orthopaedic Surgeons.2019 Oct 24;31663914
Effects of initial planning on task execution performance of older adults: A naturalistic assessment paradigm.Brown, Katelyn D; Schmitter-Edgecombe, MaureenJournal of clinical and experimental neuropsychology2020 0231658865
TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome.Garlid, Anders O; Schaffer, Calvin T; Kim, Jaewoo; Bhatt, Hirsh; Guevara-Gonzalez, Vladimir; Ping, PeipeiGene.2020 Feb 05;31647997
SMARTS: the social media-based addiction recovery and intervention targeting server.Jha, Deeptanshu; Singh, RahulBioinformatics (Oxford, England)2019 Oct 2431647520
Behavioral problems in perinatally HIV-infected young children with early antiretroviral therapy and HIV-exposed uninfected young children: prevalence and associated factors.Jantarabenjakul, Watsamon; Chonchaiya, Weerasak; Puthanakit, Thanyawee; Anugulruengkitt, Suvaporn; Theerawit, Tuangtip; Payapanon, Jesdapron; Sophonphan, Jiratchaya; Veeravigrom, Montida; Jahanshad, Neda; Thompson, Paul M; Ananworanich, Jintanat; Malee, Kathleen; Pancharoen, Chitsanu; DOET studyAIDS care.2020 04;31635484
Effects of ketamine and midazolam on resting state connectivity and comparison with ENIGMA connectivity deficit patterns in schizophrenia.Adhikari, Bhim M; Dukart, Juergen; Hipp, Joerg F; Forsyth, Anna; McMillan, Rebecca; Muthukumaraswamy, Suresh D; Ryan, Meghann C; Hong, L Elliot; Eickhoff, Simon B; Jahandshad, Neda; Thompson, Paul M; Rowland, Laura M; Kochunov, PeterHuman brain mapping.2020 Feb 15;31633254
Investigating genetic links between grapheme-colour synaesthesia and neuropsychiatric traits.Tilot, Amanda K; Vino, Arianna; Kucera, Katerina S; Carmichael, Duncan A; van den Heuvel, Loes; den Hoed, Joery; Sidoroff-Dorso, Anton V; Campbell, Archie; Porteous, David J; St Pourcain, Beate; van Leeuwen, Tessa M; Ward, Jamie; Rouw, Romke; Simner, Julia; Fisher, Simon EPhilosophical transactions of the Royal Society of London. Series B, Biological sciences.2019 12 09;31630655
Hierarchical associations of alcohol use disorder symptoms in late adolescence with markers during early adolescence.Kühn, Simone; Lisofsky, Nina; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Gallinat, Jürgen; IMAGEN ConsortiumAddictive behaviors.2020 01;31622946
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries.Hong, Na; Wen, Andrew; Stone, Daniel J; Tsuji, Shintaro; Kingsbury, Paul R; Rasmussen, Luke V; Pacheco, Jennifer A; Adekkanattu, Prakash; Wang, Fei; Luo, Yuan; Pathak, Jyotishman; Liu, Hongfang; Jiang, GuoqianJournal of biomedical informatics.2019 Nov;31622801
Systemic Mitochondrial Oxidative Phosphorylation Protein Levels Correlate with Neuroimaging Measures in Chronically HIV-Infected Individuals.Kallianpur, Kalpana J; Walker, Maegen; Gerschenson, Mariana; Shikuma, Cecilia M; Gangcuangco, Louie Mar A; Kohorn, Lindsay; Libutti, Daniel E; Nir, Talia M; Jahanshad, Neda; Thompson, Paul M; Paul, RobertAIDS research and human retroviruses.2020 01;31617381
Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia.Paik, Hyojung; Kan, Matthew J; Rappoport, Nadav; Hadley, Dexter; Sirota, Marina; Chen, Bin; Manber, Udi; Cho, Seong Beom; Butte, Atul JScientific data.2019 10 15;31615985
An overlapping pattern of cerebral cortical thinning is associated with both positive symptoms and aggression in schizophrenia via the ENIGMA consortium.Wong, Ting Yat; Radua, Joaquim; Pomarol-Clotet, Edith; Salvador, Raymond; Albajes-Eizagirre, Anton; Solanes, Aleix; Canales-Rodriguez, Erick J; Guerrero-Pedraza, Amalia; Sarro, Salvador; Kircher, Tilo; Nenadic, Igor; Krug, Axel; Grotegerd, Dominik; Dannlowski, Udo; Borgwardt, Stefan; Riecher-Rössler, Anita; Schmidt, Andre; Andreou, Christina; Huber, Christian G; Turner, Jessica; Calhoun, Vince; Jiang, Wenhao; Clark, Sarah; Walton, Esther; Spalletta, Gianfranco; Banaj, Nerisa; Piras, Fabrizio; Ciullo, Valentina; Vecchio, Daniela; Lebedeva, Irina; Tomyshev, Alexander S; Kaleda, Vasily; Klushnik, Tatyana; Filho, Geraldo Busatto; Zanetti, Marcus Vinicius; Serpa, Mauricio Henriques; Penteado Rosa, Pedro Gomes; Hashimoto, Ryota; Fukunaga, Masaki; Richter, Anja; Krämer, Bernd; Gruber, Oliver; Voineskos, Aristotle N; Dickie, Erin W; Tomecek, David; Skoch, Antonin; Spaniel, Filip; Hoschl, Cyril; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Holleran, Laurena; Ciufolini, Simone; Marques, Tiago Reis; Dazzan, Paola; Murray, Robin; Lamsma, Jelle; Cahn, Wiepke; van Haren, Neeltje; Díaz-Zuluaga, Ana M; Pineda-Zapata, Julián A; Vargas, Cristian; López-Jaramillo, Carlos; van Erp, Theo G M; Gur, Ruben C; Nickl-Jockschat, ThomasPsychological medicine.2020 09;31615588
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS.Liao, Katherine P; Sun, Jiehuan; Cai, Tianrun A; Link, Nicholas; Hong, Chuan; Huang, Jie; Huffman, Jennifer E; Gronsbell, Jessica; Zhang, Yichi; Ho, Yuk-Lam; Castro, Victor; Gainer, Vivian; Murphy, Shawn N; O'Donnell, Christopher J; Gaziano, J Michael; Cho, Kelly; Szolovits, Peter; Kohane, Isaac S; Yu, Sheng; Cai, TianxiJournal of the American Medical Informatics Association : JAMIA.2019 11 01;31613361
DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark.Linderman, Michael D; Chia, Davin; Wallace, Forrest; Nothaft, Frank ABMC bioinformatics.2019 Oct 11;31604420
Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways.Horgusluoglu-Moloch, Emrin; Risacher, Shannon L; Crane, Paul K; Hibar, Derrek; Thompson, Paul M; Saykin, Andrew J; Nho, Kwangsik; Alzheimer?s Disease Neuroimaging Initiative (ADNI)Scientific reports.2019 Oct 10;31601890
Transcriptional regulatory model of fibrosis progression in the human lung.McDonough, John E; Ahangari, Farida; Li, Qin; Jain, Siddhartha; Verleden, Stijn E; Herazo-Maya, Jose; Vukmirovic, Milica; DeIuliis, Giuseppe; Tzouvelekis, Argyrios; Tanabe, Naoya; Chu, Fanny; Yan, Xiting; Verschakelen, Johny; Homer, Robert J; Manatakis, Dimitris V; Zhang, Junke; Ding, Jun; Maes, Karen; De Sadeleer, Laurens; Vos, Robin; Neyrinck, Arne; Benos, Panayiotis V; Bar-Joseph, Ziv; Tantin, Dean; Hogg, James C; Vanaudenaerde, Bart M; Wuyts, Wim A; Kaminski, NaftaliJCI insight.2019 Nov 14;31600171
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.Deutsch, Eric W; Lane, Lydie; Overall, Christopher M; Bandeira, Nuno; Baker, Mark S; Pineau, Charles; Moritz, Robert L; Corrales, Fernando; Orchard, Sandra; Van Eyk, Jennifer E; Paik, Young-Ki; Weintraub, Susan T; Vandenbrouck, Yves; Omenn, Gilbert SJournal of proteome research.2019 Dec 06;31599596
An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling.Hong, Na; Wang, Kui; Wu, Sizhu; Shen, Feichen; Yao, Lixia; Jiang, GuoqianJournal of healthcare informatics research.2019 Sep;31598581
Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations.Ong, Carmichael F; Geijtenbeek, Thomas; Hicks, Jennifer L; Delp, Scott LPLoS computational biology.2019 10;31589597
Noninvasive Detection of Colorectal Carcinomas Using Serum Protein Biomarkers.Ivancic, Melanie M; Megna, Bryant W; Sverchkov, Yuriy; Craven, Mark; Reichelderfer, Mark; Pickhardt, Perry J; Sussman, Michael R; Kennedy, Gregory DThe Journal of surgical research.2020 02;31586890
Medical device surveillance with electronic health records.Callahan, Alison; Fries, Jason A; Ré, Christopher; Huddleston 3rd, James I; Giori, Nicholas J; Delp, Scott; Shah, Nigam HNPJ digital medicine.2019;31583282
Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data.Ignjatovic, Vera; Geyer, Philipp E; Palaniappan, Krishnan K; Chaaban, Jessica E; Omenn, Gilbert S; Baker, Mark S; Deutsch, Eric W; Schwenk, Jochen MJournal of proteome research.2019 Dec 06;31573204
Sample size considerations for comparing dynamic treatment regimens in a sequential multiple-assignment randomized trial with a continuous longitudinal outcome.Seewald, Nicholas J; Kidwell, Kelley M; Nahum-Shani, Inbal; Wu, Tianshuang; McKay, James R; Almirall, DanielStatistical methods in medical research.2019 Oct 01;31571526
Training Complex Models with Multi-Task Weak Supervision.Ratner, Alexander; Hancock, Braden; Dunnmon, Jared; Sala, Frederic; Pandey, Shreyash; Ré, ChristopherProceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence.2019 Jan-Feb;31565535
Robot-Enabled Support of Daily Activities in Smart Home Environments.Wilson, Garrett; Pereyda, Christopher; Raghunath, Nisha; de la Cruz, Gabriel; Goel, Shivam; Nesaei, Sepehr; Minor, Bryan; Schmitter-Edgecombe, Maureen; Taylor, Matthew E; Cook, Diane JCognitive systems research.2019 May;31565029
Safe Expectations: Current State and Future Directions for Medication Safety in Pregnancy Research.Wood, Mollie E; Andrade, Susan E; Toh, SengweeClinical therapeutics.2019 Sep 25;31563392
Chalcones as a basis for computer-aided drug design: innovative approaches to tackle malaria.Lima, Marilia Nn; Neves, Bruno J; Cassiano, Gustavo C; Gomes, Marcelo N; Tomaz, Kaira Cp; Ferreira, Leticia T; Tavella, Tatyana A; Calit, Juliana; Bargieri, Daniel Y; Muratov, Eugene N; Costa, Fabio Tm; Andrade, Carolina HortaFuture medicinal chemistry.2019 10;31556721
The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data.Kim, Hosung; Irimia, Andrei; Hobel, Samuel M; Pogosyan, Mher; Tang, Haoteng; Petrosyan, Petros; Blanco, Rita Esquivel Castelo; Duffy, Ben A; Zhao, Lu; Crawford, Karen L; Liew, Sook-Lei; Clark, Kristi; Law, Meng; Mukherjee, Pratik; Manley, Geoffrey T; Van Horn, John D; Toga, Arthur WFrontiers in neuroinformatics201931555116
Domain Generalization via Multidomain Discriminant Analysis.Hu, Shoubo; Zhang, Kun; Chen, Zhitang; Chan, LaiwanUncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence.2019 Jul;31555066
Learning Disentangled Semantic Representation for Domain Adaptation.Cai, Ruichu; Li, Zijian; Wei, Pengfei; Qiao, Jie; Zhang, Kun; Hao, ZhifengIJCAI : proceedings of the conference.2019 Aug;31555039
Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation.Guerrero, Jose M; Adluru, Nagesh; Bendlin, Barbara B; Goldsmith, H Hill; Schaefer, Stacey M; Davidson, Richard J; Kecskemeti, Steven R; Zhang, Hui; Alexander, Andrew LPloS one201931553719
A fast divide-and-conquer sparse Cox regression.Wang, Yan; Hong, Chuan; Palmer, Nathan; Di, Qian; Schwartz, Joel; Kohane, Isaac; Cai, TianxiBiostatistics (Oxford, England)2021 Apr 1031545341
The case for openness in engineering research.Berg, Devin R; Niemeyer, Kyle EF1000Research.2018;31543946
Evaluating FAIR maturity through a scalable, automated, community-governed framework.Wilkinson, Mark D; Dumontier, Michel; Sansone, Susanna-Assunta; Bonino da Silva Santos, Luiz Olavo; Prieto, Mario; Batista, Dominique; McQuilton, Peter; Kuhn, Tobias; Rocca-Serra, Philippe; Crosas, Merc?; Schultes, ErikScientific data.2019 09 20;31541130
Predicting pregnancy using large-scale data from a women's health tracking mobile application.Liu, Bo; Shi, Shuyang; Wu, Yongshang; Thomas, Daniel; Symul, Laura; Pierson, Emma; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2019 May;31538145
Inferring Multidimensional Rates of Aging from Cross-Sectional Data.Pierson, Emma; Koh, Pang Wei; Hashimoto, Tatsunori; Koller, Daphne; Leskovec, Jure; Eriksson, Nicholas; Liang, PercyProceedings of machine learning research.2019 Apr;31538144
Predicting Dynamic Embedding Trajectory in Temporal Interaction Networks.Kumar, Srijan; Zhang, Xikun; Leskovec, JureKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2019 Aug;31538030
Amalgamating evidence of dynamics.Danks, David; Plis, SergeySynthese.2019 Aug;31527987
Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes.Xue, Yifan; Cooper, Gregory; Cai, Chunhui; Lu, Songjian; Hu, Baoli; Ma, Xiaojun; Lu, XinghuaScientific reports.2019 Sep 13;31519988
Multifaceted protein-protein interaction prediction based on Siamese residual RCNN.Chen, Muhao; Ju, Chelsea J-T; Zhou, Guangyu; Chen, Xuelu; Zhang, Tianran; Chang, Kai-Wei; Zaniolo, Carlo; Wang, WeiBioinformatics (Oxford, England).2019 07 15;31510705
The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment.Zhang, Yi; Manjunath, Mohith; Yan, Jialu; Baur, Brittany A; Zhang, Shilu; Roy, Sushmita; Song, Jun SFrontiers in genetics.2019;31507631
Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts.Tsueng, Ginger; Nanis, Max; Fouquier, Jennifer T; Mayers, Michael; Good, Benjamin M; Su, Andrew IBioinformatics (Oxford, England).2019 Sep 03;31504205
Causal Discovery and Forecasting in Nonstationary Environments with State-Space Models.Huang, Biwei; Zhang, Kun; Gong, Mingming; Glymour, ClarkProceedings of machine learning research.2019 Jun;31497778
Data-Driven Approach to Multiple-Source Domain Adaptation.Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, KunProceedings of machine learning research.2019 Apr;31497777
Low-Dimensional Density Ratio Estimation for Covariate Shift Correction.Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, KunProceedings of machine learning research.2019 Apr;31497776
A privacy-preserving distributed filtering framework for NLP artifacts.Sadat, Md Nazmus; Aziz, Md Momin Al; Mohammed, Noman; Pakhomov, Serguei; Liu, Hongfang; Jiang, XiaoqianBMC medical informatics and decision making.2019 Sep 07;31493797
Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics.Köhler, Sebastian; Øien, N Christine; Buske, Orion J; Groza, Tudor; Jacobsen, Julius O B; McNamara, Craig; Vasilevsky, Nicole; Carmody, Leigh C; Gourdine, J P; Gargano, Michael; McMurry, Julie A; Danis, Daniel; Mungall, Christopher J; Smedley, Damian; Haendel, Melissa; Robinson, Peter NCurrent protocols in human genetics.2019 Sep;31479590
Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data.Hicks, Allison L; Wheeler, Nicole; Sánchez-Busó, Leonor; Rakeman, Jennifer L; Harris, Simon R; Grad, Yonatan HPLoS computational biology.2019 09;31479500
A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS.McMahon, Mary; Contreras, Adrian; Holm, Mikael; Uechi, Tamayo; Forester, Craig M; Pang, Xiaming; Jackson, Cody; Calvert, Meredith E; Chen, Bin; Quigley, David A; Luk, John M; Kelley, R Kate; Gordan, John D; Gill, Ryan M; Blanchard, Scott C; Ruggero, DavideeLife.2019 09 03;31478838
White matter disturbances in major depressive disorder: a coordinated analysis across 20 international cohorts in the ENIGMA MDD working group.van Velzen, Laura S; Kelly, Sinead; Isaev, Dmitry; Aleman, Andre; Aftanas, Lyubomir I; Bauer, Jochen; Baune, Bernhard T; Brak, Ivan V; Carballedo, Angela; Connolly, Colm G; Couvy-Duchesne, Baptiste; Cullen, Kathryn R; Danilenko, Konstantin V; Dannlowski, Udo; Enneking, Verena; Filimonova, Elena; Förster, Katharina; Frodl, Thomas; Gotlib, Ian H; Groenewold, Nynke A; Grotegerd, Dominik; Harris, Mathew A; Hatton, Sean N; Hawkins, Emma L; Hickie, Ian B; Ho, Tiffany C; Jansen, Andreas; Kircher, Tilo; Klimes-Dougan, Bonnie; Kochunov, Peter; Krug, Axel; Lagopoulos, Jim; Lee, Renick; Lett, Tristram A; Li, Meng; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; McLellan, Quinn; Meinert, Susanne; Nenadi?, Igor; Osipov, Evgeny; Penninx, Brenda W J H; Portella, Maria J; Repple, Jonathan; Roos, Annerine; Sacchet, Matthew D; Sämann, Philipp G; Schnell, Knut; Shen, Xueyi; Sim, Kang; Stein, Dan J; van Tol, Marie-Jose; Tomyshev, Alexander S; Tozzi, Leonardo; Veer, Ilya M; Vermeiren, Robert; Vives-Gilabert, Yolanda; Walter, Henrik; Walter, Martin; van der Wee, Nic J A; van der Werff, Steven J A; Schreiner, Melinda Westlund; Whalley, Heather C; Wright, Margaret J; Yang, Tony T; Zhu, Alyssa; Veltman, Dick J; Thompson, Paul M; Jahanshad, Neda; Schmaal, LianneMolecular psychiatry.2019 Aug 30;31471575
Functional Brain Hyperactivations Are Linked to an Electrophysiological Measure of Slow Interhemispheric Transfer Time after Pediatric Moderate/Severe Traumatic Brain Injury.Olsen, Alexander; Babikian, Talin; Dennis, Emily L; Ellis-Blied, Monica U; Giza, Christopher; Marion, Sarah DeBoard; Mink, Richard; Johnson, Jeffrey; Babbitt, Christopher J; Thompson, Paul M; Asarnow, Robert FJournal of neurotrauma.2020 Jan 15;31469049
Practical Considerations for Data Collection and Management in Mobile Health Micro-randomized Trials.Seewald, Nicholas J; Smith, Shawna N; Lee, Andy Jinseok; Klasnja, Predrag; Murphy, Susan AStatistics in biosciences.2019 Jul;31462937
Learning High-dimensional Directed Acyclic Graphs with Mixed Data-types.Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory FProceedings of machine learning research.2019 Aug;31453569
Inverse probability weighted Cox model in multi-site studies without sharing individual-level data.Shu, Di; Yoshida, Kazuki; Fireman, Bruce H; Toh, SengweeStatistical methods in medical research.2019 Aug 26;31448681
The Association Between Familial Risk and Brain Abnormalities Is Disease Specific: An ENIGMA-Relatives Study of Schizophrenia and Bipolar Disorder.de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Aleman, André; Alpert, Kathryn I; Bearden, Carrie E; Bertolino, Alessandro; Bois, Catherine; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Frankland, Andrew; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; de Haan, Lieuwe; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hillegers, Manon H J; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krabbendam, Lydia; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Marsman, Jan-Bernard C; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Najt, Pablo; Neilson, Emma; Newport, Jason; van Os, Jim; Overs, Bronwyn; Ozerdem, Aysegul; Picchioni, Marco M; Richter, Anja; Roberts, Gloria; Aydogan, Aybala Saricicek; Schofield, Peter R; Simsek, Fatma; Soares, Jair C; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Walter, Henrik; Wang, Lei; Weinberger, Daniel R; Whalley, Heather C; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; van Erp, Theo G M; Turner, Jessica A; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E MBiological psychiatry.2019 10 01;31443932
Context-Aware Delivery of Ecological Momentary Assessment.Aminikhanghahi, Samaneh; Schmitter-Edgecombe, Maureen; Cook, Diane JIEEE journal of biomedical and health informatics2020 0431443058
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project.Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen; Snyder, Michael P; Baker, Mark S; Deutsch, Eric WJournal of proteome research.2019 Dec 06;31430157
APOE?4 Gene Dose and Sex Effects on Alzheimer's Disease MRI Biomarkers in Older Adults with Mild Cognitive Impairment.Hobel, Zachary; Isenberg, A Lisette; Raghupathy, Dhvani; Mack, Wendy; Pa, Judy; Alzheimer?s Disease Neuroimaging Initiative and the Australian Imaging Biomarkers and Lifestyle flagship study of ageingJournal of Alzheimer's disease : JAD.2019;31424388
Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis.Zheng, Zihao; Mergaert, Aisha M; Fahmy, Lauren M; Bawadekar, Mandar; Holmes, Caitlyn L; Ong, Irene M; Bridges, Alan J; Newton, Michael A; Shelef, Miriam AArthritis & rheumatology (Hoboken, N.J.).2019 Aug 08;31397047
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types.Yu, K; Chen, B; Aran, D; Charalel, J; Yau, C; Wolf, D M; van 't Veer, L J; Butte, A J; Goldstein, T; Sirota, MNature communications.2019 Aug 08;31395879
Architecture and usability of OntoKeeper, an ontology evaluation tool.Amith, Muhammad; Manion, Frank; Liang, Chen; Harris, Marcelline; Wang, Dennis; He, Yongqun; Tao, CuiBMC medical informatics and decision making.2019 08 08;31391056
Quantifying the impact of public omics data.Perez-Riverol, Yasset; Zorin, Andrey; Dass, Gaurhari; Vu, Manh-Tu; Xu, Pan; Glont, Mihai; Vizcaíno, Juan Antonio; Jarnuczak, Andrew F; Petryszak, Robert; Ping, Peipei; Hermjakob, HenningNature communications.2019 Aug 05;31383865
Predicting kinase inhibitors using bioactivity matrix derived informer sets.Zhang, Huikun; Ericksen, Spencer S; Lee, Ching-Pei; Ananiev, Gene E; Wlodarchak, Nathan; Yu, Peng; Mitchell, Julie C; Gitter, Anthony; Wright, Stephen J; Hoffmann, F Michael; Wildman, Scott A; Newton, Michael APLoS computational biology.2019 08;31381559
Sequence tube maps: making graph genomes intuitive to commuters.Beyer, Wolfgang; Novak, Adam M; Hickey, Glenn; Chan, Jeffrey; Tan, Vanessa; Paten, Benedict; Zerbino, Daniel RBioinformatics (Oxford, England).2019 Dec 15;31368484
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping.Sánchez, Luis Francisco Hernández; Burger, Bram; Horro, Carlos; Fabregat, Antonio; Johansson, Stefan; Njølstad, Pål Rasmus; Barsnes, Harald; Hermjakob, Henning; Vaudel, MarcGigaScience.2019 08 01;31363752
Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements.Tsueng, Ginger; Kumar, Arun; Nanis, Steven M; Su, Andrew IHuman computation (Fairfax, Va.).2019;31363486
New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.Evangelou, Evangelos; Gao, He; Chu, Congying; Ntritsos, Georgios; Blakeley, Paul; Butts, Andrew R; Pazoki, Raha; Suzuki, Hideaki; Koskeridis, Fotios; Yiorkas, Andrianos M; Karaman, Ibrahim; Elliott, Joshua; Luo, Qiang; Aeschbacher, Stefanie; Bartz, Traci M; Baumeister, Sebastian E; Braund, Peter S; Brown, Michael R; Brody, Jennifer A; Clarke, Toni-Kim; Dimou, Niki; Faul, Jessica D; Homuth, Georg; Jackson, Anne U; Kentistou, Katherine A; Joshi, Peter K; Lemaitre, Rozenn N; Lind, Penelope A; Lyytikäinen, Leo-Pekka; Mangino, Massimo; Milaneschi, Yuri; Nelson, Christopher P; Nolte, Ilja M; Perälä, Mia-Maria; Polasek, Ozren; Porteous, David; Ratliff, Scott M; Smith, Jennifer A; Stan?áková, Alena; Teumer, Alexander; Tuominen, Samuli; Thériault, Sébastien; Vangipurapu, Jagadish; Whitfield, John B; Wood, Alexis; Yao, Jie; Yu, Bing; Zhao, Wei; Arking, Dan E; Auvinen, Juha; Liu, Chunyu; Männikkö, Minna; Risch, Lorenz; Rotter, Jerome I; Snieder, Harold; Veijola, Juha; Blakemore, Alexandra I; Boehnke, Michael; Campbell, Harry; Conen, David; Eriksson, Johan G; Grabe, Hans J; Guo, Xiuqing; van der Harst, Pim; Hartman, Catharina A; Hayward, Caroline; Heath, Andrew C; Jarvelin, Marjo-Riitta; Kähönen, Mika; Kardia, Sharon L R; Kühne, Michael; Kuusisto, Johanna; Laakso, Markku; Lahti, Jari; Lehtimäki, Terho; McIntosh, Andrew M; Mohlke, Karen L; Morrison, Alanna C; Martin, Nicholas G; Oldehinkel, Albertine J; Penninx, Brenda W J H; Psaty, Bruce M; Raitakari, Olli T; Rudan, Igor; Samani, Nilesh J; Scott, Laura J; Spector, Tim D; Verweij, Niek; Weir, David R; Wilson, James F; Levy, Daniel; Tzoulaki, Ioanna; Bell, Jimmy D; Matthews, Paul M; Rothenfluh, Adrian; Desrivières, Sylvane; Schumann, Gunter; Elliott, PaulNature human behaviour.2019 09;31358974
Altered white matter microstructure in 22q11.2 deletion syndrome: a multisite diffusion tensor imaging study.Villalón-Reina, Julio E; Martínez, Kenia; Qu, Xiaoping; Ching, Christopher R K; Nir, Talia M; Kothapalli, Deydeep; Corbin, Conor; Sun, Daqiang; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Emanuel, Beverly; McDonald-McGinn, Donna M; Vorstman, Jacob A S; Fiksinski, Ania M; Koops, Sanne; Ruparel, Kosha; Roalf, David; Gur, Raquel E; Eric Schmitt, J; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Doherty, Joanne L; Cunningham, Adam C; van den Bree, Marianne; Linden, David E J; Owen, Michael; Moss, Hayley; Kelly, Sinead; Donohoe, Gary; Murphy, Kieran C; Arango, Celso; Jahanshad, Neda; Thompson, Paul M; Bearden, Carrie EMolecular psychiatry.2019 Jul 29;31358905
ROBOT: A Tool for Automating Ontology Workflows.Jackson, Rebecca C; Balhoff, James P; Douglass, Eric; Harris, Nomi L; Mungall, Christopher J; Overton, James ABMC bioinformatics.2019 Jul 29;31357927
Temporal Poisson Square Root Graphical Models.Geng, Sinong; Kuang, Zhaobin; Peissig, Peggy; Page, DavidProceedings of machine learning research.2018 Jul;31355361
Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases.O'Banion, Colin P; Vickerman, Brianna M; Haar, Lauren; Lawrence, David SCell chemical biology.2019 Oct 17;31353320
No Alterations of Brain Structural Asymmetry in Major Depressive Disorder: An ENIGMA Consortium Analysis.de Kovel, Carolien G F; Aftanas, Lyubomir; Aleman, André; Alexander-Bloch, Aaron F; Baune, Bernhard T; Brack, Ivan; Bülow, Robin; Busatto Filho, Geraldo; Carballedo, Angela; Connolly, Colm G; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Dohm, Katharina; Erwin-Grabner, Tracy; Frodl, Thomas; Fu, Cynthia H Y; Hall, Geoffrey B; Glahn, David C; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans Jörgen; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Harris, Mathew A; Harrison, Ben J; Hatton, Sean N; Hickie, Ian B; Ho, Tiffany C; Jahanshad, Neda; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leehr, Elisabeth J; Li, Meng; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew M; McLellan, Quinn; Medland, Sarah E; Mueller, Bryon A; Nenadic, Igor; Osipov, Evgeny; Papmeyer, Martina; Portella, Maria J; Reneman, Liesbeth; Rosa, Pedro G P; Sacchet, Matthew D; Schnell, Knut; Schrantee, Anouk; Sim, Kang; Simulionyte, Egle; Sindermann, Lisa; Singh, Aditya; Stein, Dan J; Ubani, Benjamin N; Van der Wee, Nic J A; Van der Werff, Steven J A; Veer, Ilya M; Vives-Gilabert, Yolanda; Völzke, Henry; Walter, Henrik; Walter, Martin; Schreiner, Melinda Westlund; Whalley, Heather; Winter, Nils; Wittfeld, Katharina; Yang, Tony T; Yüksel, Dilara; Zaremba, Dario; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Francks, ClydeThe American journal of psychiatry.2019 12 01;31352813
White Matter in Schizophrenia Treatment Resistance.Kochunov, Peter; Huang, Junchao; Chen, Song; Li, Yanli; Tan, Shuping; Fan, Fengmei; Feng, Wei; Wang, Yunhui; Rowland, Laura M; Savransky, Anya; Du, Xiaoming; Chiappelli, Joshua; Chen, Shuo; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Adhikari, Bhim; Sampath, Hemalatha; Cui, Yimin; Wang, Zhiren; Yang, Fude; Tan, Yunlong; Hong, L ElliotThe American journal of psychiatry.2019 10 01;31352812
We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts?Wheeler, NicoleThorax.2019 Sep;31331948
iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies.Rojo, Constanza; Zhang, Qi; Kele?, SündüzGenetic epidemiology.2019 10;31328826
Heavy drinking in adolescents is associated with change in brainstem microstructure and reward sensitivity.Galinowski, André; Miranda, Ruben; Lemaitre, Hervé; Artiges, Eric; Paillère Martinot, Marie-Laure; Filippi, Irina; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Stringaris, Argyris; Becker, Andreas; Isensee, Corinna; Struve, Maren; Fadai, Tahmine; Kappel, Viola; Goodman, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gallinat, Juergen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hohmann, Sarah; Jurk, Sarah; Millenet, Sabina; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Poustka, Luise; Quinlan, Erin Burke; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; IMAGEN ConsortiumAddiction biology.2020 May;31328396
Cannabis-Associated Psychotic-like Experiences Are Mediated by Developmental Changes in the Parahippocampal Gyrus.Yu, Tao; Jia, Tianye; Zhu, Liping; Desrivières, Sylvane; Macare, Christine; Bi, Yan; Bokde, Arun L W; Quinlan, Erin Burke; Heinz, Andreas; Ittermann, Bernd; Liu, ChuanXin; Ji, Lei; Banaschewski, Tobias; Ren, Decheng; Du, Li; Hou, Binyin; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Luo, Qiang; Chu, Congying; Paus, Tomas; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Smolka, Michael N; Vetter, Nora C; Mennigen, Eva; Lei, Cai; Walter, Henrik; Fröhner, Juliane H; Whelan, Robert; He, Guang; He, Lin; Schumann, Gunter; Robert, Gabriel; IMAGEN ConsortiumJournal of the American Academy of Child and Adolescent Psychiatry2020 0531326579
Fast Causal Inference with Non-Random Missingness by Test-Wise Deletion.Strobl, Eric V; Visweswaran, Shyam; Spirtes, Peter LInternational journal of data science and analytics.2018 Aug;31321289
Functional network connectivity impairments and core cognitive deficits in schizophrenia.Adhikari, Bhim M; Hong, L Elliot; Sampath, Hemalatha; Chiappelli, Joshua; Jahanshad, Neda; Thompson, Paul M; Rowland, Laura M; Calhoun, Vince D; Du, Xiaoming; Chen, Shuo; Kochunov, PeterHuman brain mapping.2019 11 01;31313441
Irritability and brain volume in adolescents: cross-sectional and longitudinal associations.Dennis, Emily L; Humphreys, Kathryn L; King, Lucy S; Thompson, Paul M; Gotlib, Ian HSocial cognitive and affective neuroscience.2019 07 31;31309969
Weakly supervised classification of aortic valve malformations using unlabeled cardiac MRI sequences.Fries, Jason A; Varma, Paroma; Chen, Vincent S; Xiao, Ke; Tejeda, Heliodoro; Saha, Priyanka; Dunnmon, Jared; Chubb, Henry; Maskatia, Shiraz; Fiterau, Madalina; Delp, Scott; Ashley, Euan; Ré, Christopher; Priest, James RNature communications.2019 Jul 15;31308376
Best practices for analyzing large-scale health data from wearables and smartphone apps.Hicks, Jennifer L; Althoff, Tim; Sosic, Rok; Kuhar, Peter; Bostjancic, Bojan; King, Abby C; Leskovec, Jure; Delp, Scott LNPJ digital medicine.2019;31304391
Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants.Cline, Melissa S; Babbi, Giulia; Bonache, Sandra; Cao, Yue; Casadio, Rita; de la Cruz, Xavier; Díez, Orland; Gutiérrez-Enríquez, Sara; Katsonis, Panagiotis; Lai, Carmen; Lichtarge, Olivier; Martelli, Pier L; Mishne, Gilad; Moles-Fernández, Alejandro; Montalban, Gemma; Mooney, Sean D; O'Conner, Robert; Ootes, Lars; Özkan, Selen; Padilla, Natalia; Pagel, Kymberleigh A; Pejaver, Vikas; Radivojac, Predrag; Riera, Casandra; Savojardo, Castrense; Shen, Yang; Sun, Yuanfei; Topper, Scott; Parsons, Michael T; Spurdle, Amanda B; Goldgar, David E; ENIGMA ConsortiumHuman mutation.2019 Sep;31294896
Single Nucleotide Polymorphisms at a Distance from Aryl Hydrocarbon Receptor (AHR) Binding Sites Influence AHR Ligand-Dependent Gene Expression.Neavin, Drew R; Lee, Jeong-Heon; Liu, Duan; Ye, Zhenqing; Li, Hu; Wang, Liewei; Ordog, Tamas; Weinshilboum, Richard MDrug metabolism and disposition: the biological fate of chemicals.2019 09;31292129
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline.Shteynberg, David D; Deutsch, Eric W; Campbell, David S; Hoopmann, Michael R; Kusebauch, Ulrike; Lee, Dave; Mendoza, Luis; Midha, Mukul Kumar; Sun, Zhi; Whetton, Anthony D; Moritz, Robert LJournal of proteome research.2019 Jul 10;31290668
Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference.Cai, Chunhui; Cooper, Gregory F; Lu, Kevin N; Ma, Xiaojun; Xu, Shuping; Zhao, Zhenlong; Chen, Xueer; Xue, Yifan; Lee, Adrian V; Clark, Nathan; Chen, Vicky; Lu, Songjian; Chen, Lujia; Yu, Liyue; Hochheiser, Harry S; Jiang, Xia; Wang, Q Jane; Lu, XinghuaPLoS computational biology.2019 07;31276486
Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients.Bhattacharyya, Sudeepa; Ahmed, Ahmed T; Arnold, Matthias; Liu, Duan; Luo, Chunqiao; Zhu, Hongjie; Mahmoudiandehkordi, Siamak; Neavin, Drew; Louie, Gregory; Dunlop, Boadie W; Frye, Mark A; Wang, Liewei; Weinshilboum, Richard M; Krishnan, Ranga R; Rush, A John; Kaddurah-Daouk, RimaTranslational psychiatry.2019 Jul 04;31273200
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.He, Yongqun; Duncan, William D; Cooper, Daniel J; Hansen, Jens; Iyengar, Ravi; Ong, Edison; Walker, Kendal; Tibi, Omar; Smith, Sam; Serra, Lucas M; Zheng, Jie; Sarntivijai, Sirarat; Schürer, Stephan; O'Shea, K Sue; Diehl, Alexander DBMC bioinformatics.2019 Apr 25;31272389
The joint effect of aging and HIV infection on microstructure of white matter bundles.Kuhn, Taylor; Jin, Yan; Huang, Chao; Kim, Yeun; Nir, Talia M; Gullett, Joseph M; Jones, Jacob D; Sayegh, Phillip; Chung, Caroline; Dang, Bianca H; Singer, Elyse J; Shattuck, David W; Jahanshad, Neda; Bookheimer, Susan Y; Hinkin, Charles H; Zhu, Hongtu; Thompson, Paul M; Thames, April DHuman brain mapping.2019 10 15;31271489
Altered Cortical Brain Structure and Increased Risk for Disease Seen Decades After Perinatal Exposure to Maternal Smoking: A Study of 9000 Adults in the UK Biobank.Salminen, Lauren E; Wilcox, Rand R; Zhu, Alyssa H; Riedel, Brandalyn C; Ching, Christopher R K; Rashid, Faisal; Thomopoulos, Sophia I; Saremi, Arvin; Harrison, Marc B; Ragothaman, Anjanibhargavi; Knight, Victoria; Boyle, Christina P; Medland, Sarah E; Thompson, Paul M; Jahanshad, NedaCerebral cortex (New York, N.Y. : 1991).2019 Jul 04;31271414
Predicting development of adolescent drinking behaviour from whole brain structure at 14 years of age.Kühn, Simone; Mascharek, Anna; Banaschewski, Tobias; Bodke, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivieres, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomas; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Lindenberger, Ulman; Gallinat, Jürgen; IMAGEN ConsortiumeLife.2019 Jul 02;31262402
Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results.Martínez-Bartolomé, Salvador; Bamberger, Tom Casimir; Lavallée-Adam, Mathieu; McClatchy, Daniel B; Yates 3rd, John RJournal of proteome research.2019 08 02;31260318
Machine Learning Assisted Discovery of Novel Predictive Lab Tests Using Electronic Health Record Data.Kleiman, Ross; Kuusisto, Finn; Ross, Ian; Peissig, Peggy L; Stewart, Ron; Page, C David; Weiss, JeremyAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2019;31259012
Privacy-Preserving Collaborative Prediction using Random Forests.Giacomelli, Irene; Jha, Somesh; Kleiman, Ross; Page, David; Yoon, KyonghwanAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2019;31258977
A model for initiating research data management services at academic libraries.Read, Kevin B; Koos, Jessica; Miller, Rebekah S; Miller, Cathryn F; Phillips, Gesina A; Scheinfeld, Laurel; Surkis, AlisaJournal of the Medical Library Association : JMLA.2019 Jul;31258450
Cheminformatics-driven discovery of polymeric micelle formulations for poorly soluble drugs.Alves, Vinicius M; Hwang, Duhyeong; Muratov, Eugene; Sokolsky-Papkov, Marina; Varlamova, Ekaterina; Vinod, Natasha; Lim, Chaemin; Andrade, Carolina H; Tropsha, Alexander; Kabanov, AlexanderScience advances.2019 06;31249867
Pathway-level information extractor (PLIER) for gene expression data.Mao, Weiguang; Zaslavsky, Elena; Hartmann, Boris M; Sealfon, Stuart C; Chikina, MariaNature methods.2019 07;31249421
Augmenting subnetwork inference with information extracted from the scientific literature.Kiblawi, Sid; Chasman, Deborah; Henning, Amanda; Park, Eunju; Poon, Hoifung; Gould, Michael; Ahlquist, Paul; Craven, MarkPLoS computational biology.2019 Jun;31246951
Machine learning techniques for personalized breast cancer risk prediction: comparison with the BCRAT and BOADICEA models.Ming, Chang; Viassolo, Valeria; Probst-Hensch, Nicole; Chappuis, Pierre O; Dinov, Ivo D; Katapodi, Maria CBreast cancer research : BCR.2019 06 20;31221197
Review of Causal Discovery Methods Based on Graphical Models.Glymour, Clark; Zhang, Kun; Spirtes, PeterFrontiers in genetics.2019;31214249
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases.Martínez-Romero, Marcos; O'Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Hardi, Josef; Graybeal, John; Musen, Mark ADatabase : the journal of biological databases and curation.2019 01 01;31210270
Inferring causation from time series in Earth system sciences.Runge, Jakob; Bathiany, Sebastian; Bollt, Erik; Camps-Valls, Gustau; Coumou, Dim; Deyle, Ethan; Glymour, Clark; Kretschmer, Marlene; Mahecha, Miguel D; Muñoz-Marí, Jordi; van Nes, Egbert H; Peters, Jonas; Quax, Rick; Reichstein, Markus; Scheffer, Marten; Schölkopf, Bernhard; Spirtes, Peter; Sugihara, George; Sun, Jie; Zhang, Kun; Zscheischler, JakobNature communications.2019 Jun 14;31201306
Accelerated Stochastic Power Iteration.De Sa, Christopher; He, Bryan; Mitliagkas, Ioannis; Ré, Christopher; Xu, PengProceedings of machine learning research.2018;31187095
Age-based versus Risk-based Mammography Screening in Women 40-49 Years Old: A Cross-sectional Study.Burnside, Elizabeth S; Trentham-Dietz, Amy; Shafer, Christina M; Hampton, John M; Alagoz, Oguz; Cox, Jennifer R; Mischo, Eric; Schrager, Sarina B; Wilke, Lee GRadiology.2019 Aug;31184557
Quantifying performance of machine learning methods for neuroimaging data.Jollans, Lee; Boyle, Rory; Artiges, Eric; Banaschewski, Tobias; Desrivières, Sylvane; Grigis, Antoine; Martinot, Jean-Luc; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Whelan, RobertNeuroImage.2019 Oct 01;31173905
Rapid energy expenditure estimation for ankle assisted and inclined loaded walking.Slade, Patrick; Troutman, Rachel; Kochenderfer, Mykel J; Collins, Steven H; Delp, Scott LJournal of neuroengineering and rehabilitation.2019 Jun 06;31171003
De novo protein design by citizen scientists.Koepnick, Brian; Flatten, Jeff; Husain, Tamir; Ford, Alex; Silva, Daniel-Adriano; Bick, Matthew J; Bauer, Aaron; Liu, Gaohua; Ishida, Yojiro; Boykov, Alexander; Estep, Roger D; Kleinfelter, Susan; Nørgård-Solano, Toke; Wei, Linda; Players, Foldit; Montelione, Gaetano T; DiMaio, Frank; Popovi?, Zoran; Khatib, Firas; Cooper, Seth; Baker, DavidNature.2019 Jun;31168091
Haplotype-aware diplotyping from noisy long reads.Ebler, Jana; Haukness, Marina; Pesout, Trevor; Marschall, Tobias; Paten, BenedictGenome biology.2019 06 03;31159868
Optogenetic perturbation of the biochemical pathways that control cell behavior.Haar, Lauren L; Lawrence, David S; Hughes, Robert MMethods in enzymology.2019;31155059
Multi-Site Meta-Analysis of Morphometry.Jahanshad, Neda; Faskowitz, Joshua; Roshchupkin, Gennady; Hibar, Derrek P; Gutman, Boris A; Tustison, Nicholas J; Adams, Hieab H H; Niessen, Wiro J; Vernooij, Meike W; Ikram, M Arfan; Zwiers, Marcel P; Vasquez, Alejandro Arias; Franke, Barbara; Kroll, Jennifer L; Mwangi, Benson; Soares, Jair C; Ing, Alex; Desrivieres, Sylvane; Schumann, Gunter; Hansell, Narelle K; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul MIEEE/ACM transactions on computational biology and bioinformatics.2019 Sep-Oct;31135366
10Kin1day: A Bottom-Up Neuroimaging Initiative.van den Heuvel, Martijn P; Scholtens, Lianne H; van der Burgh, Hannelore K; Agosta, Federica; Alloza, Clara; Arango, Celso; Auyeung, Bonnie; Baron-Cohen, Simon; Basaia, Silvia; Benders, Manon J N L; Beyer, Frauke; Booij, Linda; Braun, Kees P J; Filho, Geraldo Busatto; Cahn, Wiepke; Cannon, Dara M; Chaim-Avancini, Tiffany M; Chan, Sandra S M; Chen, Eric Y H; Crespo-Facorro, Benedicto; Crone, Eveline A; Dannlowski, Udo; de Zwarte, Sonja M C; Dietsche, Bruno; Donohoe, Gary; Plessis, Stefan Du; Durston, Sarah; Díaz-Caneja, Covadonga M; Díaz-Zuluaga, Ana M; Emsley, Robin; Filippi, Massimo; Frodl, Thomas; Gorges, Martin; Graff, Beata; Grotegerd, Dominik; G?secki, Dariusz; Hall, Julie M; Holleran, Laurena; Holt, Rosemary; Hopman, Helene J; Jansen, Andreas; Janssen, Joost; Jodzio, Krzysztof; Jäncke, Lutz; Kaleda, Vasiliy G; Kassubek, Jan; Masouleh, Shahrzad Kharabian; Kircher, Tilo; Koevoets, Martijn G J C; Kostic, Vladimir S; Krug, Axel; Lawrie, Stephen M; Lebedeva, Irina S; Lee, Edwin H M; Lett, Tristram A; Lewis, Simon J G; Liem, Franziskus; Lombardo, Michael V; Lopez-Jaramillo, Carlos; Margulies, Daniel S; Markett, Sebastian; Marques, Paulo; Martínez-Zalacaín, Ignacio; McDonald, Colm; McIntosh, Andrew M; McPhilemy, Genevieve; Meinert, Susanne L; Menchón, José M; Montag, Christian; Moreira, Pedro S; Morgado, Pedro; Mothersill, David O; Mérillat, Susan; Müller, Hans-Peter; Nabulsi, Leila; Najt, Pablo; Narkiewicz, Krzysztof; Naumczyk, Patrycja; Oranje, Bob; Ortiz-Garcia de la Foz, Victor; Peper, Jiska S; Pineda, Julian A; Rasser, Paul E; Redlich, Ronny; Repple, Jonathan; Reuter, Martin; Rosa, Pedro G P; Ruigrok, Amber N V; Sabisz, Agnieszka; Schall, Ulrich; Seedat, Soraya; Serpa, Mauricio H; Skouras, Stavros; Soriano-Mas, Carles; Sousa, Nuno; Szurowska, Edyta; Tomyshev, Alexander S; Tordesillas-Gutierrez, Diana; Valk, Sofie L; van den Berg, Leonard H; van Erp, Theo G M; van Haren, Neeltje E M; van Leeuwen, Judith M C; Villringer, Arno; Vinkers, Christiaan H; Vollmar, Christian; Waller, Lea; Walter, Henrik; Whalley, Heather C; Witkowska, Marta; Witte, A Veronica; Zanetti, Marcus V; Zhang, Rui; de Lange, Siemon CFrontiers in neurology.2019;31133958
Exploring the Utility of Developer Exhaust.Zhang, Jian; Lam, Max; Wang, Stephanie; Varma, Paroma; Nardi, Luigi; Olukotun, Kunle; Ré, ChristopherProceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.).2018 Jun;31131381
Representation Tradeoffs for Hyperbolic Embeddings.De Sa, Christopher; Gu, Albert; Ré, Christopher; Sala, FredericProceedings of machine learning research.2018;31131375
A two-pronged progress in structured dense matrixvector multiplication.De Sa, Christopher; Gu, Albert; Puttagunta, Rohan; Ré, Christopher; Rudra, AtriProceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms.2018 Jan;31130802
Learning Compressed Transforms with Low Displacement Rank.Thomas, Anna T; Gu, Albert; Dao, Tri; Rudra, Atri; Ré, ChristopherAdvances in neural information processing systems.2018 Dec;31130799
Training Classifiers with Natural Language Explanations.Hancock, Braden; Bringmann, Martin; Varma, Paroma; Liang, Percy; Wang, Stephanie; Ré, ChristopherProceedings of the conference. Association for Computational Linguistics. Meeting.2018 Jul;31130772
Design, construction, and validation of optogenetic proteins.O'Banion, Colin P; Goswami, Anwesha; Lawrence, David SMethods in enzymology.2019;31128778
The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services.Avesani, Paolo; McPherson, Brent; Hayashi, Soichi; Caiafa, Cesar F; Henschel, Robert; Garyfallidis, Eleftherios; Kitchell, Lindsey; Bullock, Daniel; Patterson, Andrew; Olivetti, Emanuele; Sporns, Olaf; Saykin, Andrew J; Wang, Lei; Dinov, Ivo; Hancock, David; Caron, Bradley; Qian, Yiming; Pestilli, FrancoScientific data.2019 May 23;31123325
Neural Correlates of Failed Inhibitory Control as an Early Marker of Disordered Eating in Adolescents.Bartholdy, Savani; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike; IMAGEN ConsortiumBiological psychiatry.2019 06 01;31122340
ChEA3: transcription factor enrichment analysis by orthogonal omics integration.Keenan, Alexandra B; Torre, Denis; Lachmann, Alexander; Leong, Ariel K; Wojciechowicz, Megan L; Utti, Vivian; Jagodnik, Kathleen M; Kropiwnicki, Eryk; Wang, Zichen; Ma'ayan, AviNucleic acids research.2019 Jul 02;31114921
Identifying the molecular and cellular signature of cardiac dilation following myocardial infarction.Lindsey, Merry L; Ma, Yonggang; Flynn, Elizabeth R; Winniford, Michael D; Hall, Michael E; DeLeon-Pennell, Kristine YBiochimica et biophysica acta. Molecular basis of disease.2019 Jul 01;31109452
Automated Phrase Mining from Massive Text Corpora.Shang, Jingbo; Liu, Jialu; Jiang, Meng; Ren, Xiang; Voss, Clare R; Han, JiaweiIEEE transactions on knowledge and data engineering.2018 Oct;31105412
Exercise ameliorates deficits in neural microstructure in a Disc1 model of psychiatric illness.Barnett, Brian R; Anderson, Jacqueline M; Torres-Velázquez, Maribel; Yi, Sue Y; Rowley, Paul A; Yu, John-Paul JMagnetic resonance imaging.2019 Sep;31103832
Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data.Liu, Ke; Newbury, Patrick A; Glicksberg, Benjamin S; Zeng, William Z D; Paithankar, Shreya; Andrechek, Eran R; Chen, BinNature communications.2019 05 15;31092827
Interactive impact of childhood maltreatment, depression, and age on cortical brain structure: mega-analytic findings from a large multi-site cohort.Tozzi, Leonardo; Garczarek, Lisa; Janowitz, Deborah; Stein, Dan J; Wittfeld, Katharina; Dobrowolny, Henrik; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Bülow, Robin; Völzke, Henry; Klinger-König, Johanna; Schnell, Knut; Schoepf, Dieter; Grotegerd, Dominik; Opel, Nils; Dannlowski, Udo; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Kircher, Tilo; Jüksel, Dilara; Nenadić, Igor; Krug, Axel; Hahn, Tim; Steinsträter, Olaf; Redlich, Ronny; Zaremba, Dario; Zurowski, Bartosz; Fu, Cynthia H Y; Dima, Danai; Cole, James; Grabe, Hans J; Connolly, Colm G; Yang, Tony T; Ho, Tiffany C; LeWinn, Kaja Z; Li, Meng; Groenewold, Nynke A; Salminen, Lauren E; Walter, Martin; Simmons, Alan N; van Erp, Theo G M; Jahanshad, Neda; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Hibar, Derrek P; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Frodl, Thomas; ‘for the ENIGMA-MDD Consortium’Psychological medicine2020 0431084657
Proteomics Standards Initiative Extended FASTA Format.Binz, Pierre-Alain; Shofstahl, Jim; Vizcaíno, Juan Antonio; Barsnes, Harald; Chalkley, Robert J; Menschaert, Gerben; Alpi, Emanuele; Clauser, Karl; Eng, Jimmy K; Lane, Lydie; Seymour, Sean L; Sánchez, Luis Francisco Hernández; Mayer, Gerhard; Eisenacher, Martin; Perez-Riverol, Yasset; Kapp, Eugene A; Mendoza, Luis; Baker, Peter R; Collins, Andrew; Van Den Bossche, Tim; Deutsch, Eric WJournal of proteome research.2019 Jun 07;31081335
The Effect of Cardiac Preservation Solutions on Heart Transplant Survival.Carter, Kristen T; Lirette, Seth T; Baran, David A; Creswell, Lawrence L; Panos, Anthony L; Cochran, Richard P; Copeland, Jack G; Copeland, HannahThe Journal of surgical research.2019 10;31078900
Low Smoking Exposure, the Adolescent Brain, and the Modulating Role of CHRNA5 Polymorphisms.Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Spechler, Philip A; Potter, Alexandra; Orr, Catherine; D'Alberto, Nicholas; Hudson, Kelsey E; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Higgins, Stephen T; Schumann, Gunter; Althoff, Robert R; Stein, Elliot A; Garavan, Hugh; IMAGEN ConsortiumBiological psychiatry. Cognitive neuroscience and neuroimaging.2019 Jul;31072760
modEnrichr: a suite of gene set enrichment analysis tools for model organisms.Kuleshov, Maxim V; Diaz, Jennifer E L; Flamholz, Zachary N; Keenan, Alexandra B; Lachmann, Alexander; Wojciechowicz, Megan L; Cagan, Ross L; Ma'ayan, AviNucleic acids research.2019 Jul 02;31069376
Behind Distribution Shift: Mining Driving Forces of Changes and Causal Arrows.Huang, Biwei; Zhang, Kun; Zhang, Jiji; Sanchez-Romero, Ruben; Glymour, Clark; Schölkopf, BernhardProceedings. IEEE International Conference on Data Mining.2017 Nov;31068766
Imputation Strategy for Reliable Regional MRI Morphological Measurements.Sta Cruz, Shaina; Dinov, Ivo D; Herting, Megan M; González-Zacarías, Clio; Kim, Hosung; Toga, Arthur W; Sepehrband, FarshidNeuroinformatics.2019 May 04;31054076
Amygdalar reactivity is associated with prefrontal cortical thickness in a large population-based sample of adolescents.Albaugh, Matthew D; Hudziak, James J; Orr, Catherine; Spechler, Philip A; Chaarani, Bader; Mackey, Scott; Lepage, Claude; Fonov, Vladimir; Rioux, Pierre; Evans, Alan C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh; IMAGEN ConsortiumPloS one.2019;31048888
Integrating data and knowledge to identify functional modules of genes: a multilayer approach.Liang, Lifan; Chen, Vicky; Zhu, Kunju; Fan, Xiaonan; Lu, Xinghua; Lu, SongjianBMC bioinformatics.2019 May 02;31046665
Reappraisal of variants previously linked with sudden infant death syndrome: results from three population-based cohorts.Paludan-Müller, Christian; Ghouse, Jonas; Vad, Oliver B; Herfelt, Cecilie B; Lundegaard, Pia; Ahlberg, Gustav; Schmitt, Nicole; Svendsen, Jesper H; Haunsø, Stig; Bundgaard, Henning; Hansen, Torben; Kanters, Jørgen K; Olesen, Morten SEuropean journal of human genetics : EJHG.2019 Sep;31043699
A two-tiered curriculum to improve data management practices for researchers.Read, Kevin B; Larson, Catherine; Gillespie, Colleen; Oh, So Young; Surkis, AlisaPloS one.2019;31042776
Preference-Sensitive Management of Post-Mammography Decisions in Breast Cancer Diagnosis.Ayvaci, Mehmet Ulvi Saygi; Alagoz, Oguzhan; Ahsen, Mehmet Eren; Burnside, Elizabeth SProduction and operations management.2018 Dec;31031555
Mapping abnormal subcortical neurodevelopment in a cohort of Thai children with HIV.Wade, Benjamin S C; Valcour, Victor G; Puthanakit, Thanyawee; Saremi, Arvin; Gutman, Boris A; Nir, Talia M; Watson, Christa; Aurpibul, Linda; Kosalaraksa, Pope; Ounchanum, Pradthana; Kerr, Stephen; Dumrongpisutikul, Netsiri; Visrutaratna, Pannee; Srinakarin, Jiraporn; Pothisri, Monthana; Narr, Katherine L; Thompson, Paul M; Ananworanich, Jintanat; Paul, Robert H; Jahanshad, Neda; PREDICT and Resilience Study GroupsNeuroImage. Clinical.2019 Apr 02;31029050
Machine learning for phenotyping opioid overdose events.Badger, Jonathan; LaRose, Eric; Mayer, John; Bashiri, Fereshteh; Page, David; Peissig, PeggyJournal of biomedical informatics.2019 Jun;31028874
Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures.Cooper, Daniel J; Schürer, StephanMolecules (Basel, Switzerland).2019 Apr 23;31018579
Artificial intelligence in healthcare.Yu, Kun-Hsing; Beam, Andrew L; Kohane, Isaac SNature biomedical engineering.2018 10;31015651
Brain Imaging of the Cortex in ADHD: A Coordinated Analysis of Large-Scale Clinical and Population-Based Samples.Hoogman, Martine; Muetzel, Ryan; Guimaraes, Joao P; Shumskaya, Elena; Mennes, Maarten; Zwiers, Marcel P; Jahanshad, Neda; Sudre, Gustavo; Wolfers, Thomas; Earl, Eric A; Soliva Vila, Juan Carlos; Vives-Gilabert, Yolanda; Khadka, Sabin; Novotny, Stephanie E; Hartman, Catharina A; Heslenfeld, Dirk J; Schweren, Lizanne J S; Ambrosino, Sara; Oranje, Bob; de Zeeuw, Patrick; Chaim-Avancini, Tiffany M; Rosa, Pedro G P; Zanetti, Marcus V; Malpas, Charles B; Kohls, Gregor; von Polier, Georg G; Seitz, Jochen; Biederman, Joseph; Doyle, Alysa E; Dale, Anders M; van Erp, Theo G M; Epstein, Jeffery N; Jernigan, Terry L; Baur-Streubel, Ramona; Ziegler, Georg C; Zierhut, Kathrin C; Schrantee, Anouk; Høvik, Marie F; Lundervold, Astri J; Kelly, Clare; McCarthy, Hazel; Skokauskas, Norbert; O'Gorman Tuura, Ruth L; Calvo, Anna; Lera-Miguel, Sara; Nicolau, Rosa; Chantiluke, Kaylita C; Christakou, Anastasia; Vance, Alasdair; Cercignani, Mara; Gabel, Matt C; Asherson, Philip; Baumeister, Sarah; Brandeis, Daniel; Hohmann, Sarah; Bramati, Ivanei E; Tovar-Moll, Fernanda; Fallgatter, Andreas J; Kardatzki, Bernd; Schwarz, Lena; Anikin, Anatoly; Baranov, Alexandr; Gogberashvili, Tinatin; Kapilushniy, Dmitry; Solovieva, Anastasia; El Marroun, Hanan; White, Tonya; Karkashadze, Georgii; Namazova-Baranova, Leyla; Ethofer, Thomas; Mattos, Paulo; Banaschewski, Tobias; Coghill, David; Plessen, Kerstin J; Kuntsi, Jonna; Mehta, Mitul A; Paloyelis, Yannis; Harrison, Neil A; Bellgrove, Mark A; Silk, Tim J; Cubillo, Ana I; Rubia, Katya; Lazaro, Luisa; Brem, Silvia; Walitza, Susanne; Frodl, Thomas; Zentis, Mariam; Castellanos, Francisco X; Yoncheva, Yuliya N; Haavik, Jan; Reneman, Liesbeth; Conzelmann, Annette; Lesch, Klaus-Peter; Pauli, Paul; Reif, Andreas; Tamm, Leanne; Konrad, Kerstin; Oberwelland Weiss, Eileen; Busatto, Geraldo F; Louza, Mario R; Durston, Sarah; Hoekstra, Pieter J; Oosterlaan, Jaap; Stevens, Michael C; Ramos-Quiroga, J Antoni; Vilarroya, Oscar; Fair, Damien A; Nigg, Joel T; Thompson, Paul M; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Tiemeier, Henning; Bralten, Janita; Franke, BarbaraThe American journal of psychiatry.2019 Jul 01;31014101
Automated Debugging in Data-Intensive Scalable Computing.Gulzar, Muhammad Ali; Interlandi, Matteo; Han, Xueyuan; Li, Mingda; Condie, Tyson; Kim, MiryungProceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference).2017 Sep;31008457
Adding data provenance support to Apache Spark.Interlandi, Matteo; Ekmekji, Ari; Shah, Kshitij; Gulzar, Muhammad Ali; Tetali, Sai Deep; Kim, Miryung; Millstein, Todd; Condie, TysonThe VLDB journal : very large data bases : a publication of the VLDB Endowment.2018 Oct;31007500
Neuroimaging Evidence for Right Orbitofrontal Cortex Differences in Adolescents With Emotional and Behavioral Dysregulation.Spechler, Philip A; Chaarani, Bader; Orr, Catherine; Mackey, Scott; Higgins, Stephen T; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Althoff, Robert R; IMAGEN ConsortiumJournal of the American Academy of Child and Adolescent Psychiatry.2019 11;31004740
Deep Learning Benchmarks on L1000 Gene Expression Data.McDermott, Matthew; Wang, Jennifer; Zhao, Wen Ning; Sheridan, Steven D; Szolovits, Peter; Kohane, Isaac; Haggarty, Stephen J; Perlis, Roy HIEEE/ACM transactions on computational biology and bioinformatics.2019 Apr 11;30990190
An average-case sublinear forward algorithm for the haploid Li and Stephens model.Rosen, Yohei M; Paten, Benedict JAlgorithms for molecular biology : AMB.2019;30988694
Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms.Can, Anil; Lai, Pui Man Rosalind; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, RoseScientific reports.2019 Apr 15;30988354
ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets.Pullman, Benjamin S; Wertz, Julie; Carver, Jeremy; Bandeira, NunoJournal of proteome research.2018 12 07;30985146
Assessing the value of a censored surrogate outcome.Parast, Layla; Tian, Lu; Cai, TianxiLifetime data analysis.2019 Apr 12;30980316
Predictive Big Data Analytics using the UK Biobank Data.Zhou, Yiwang; Zhao, Lu; Zhou, Nina; Zhao, Yi; Marino, Simeone; Wang, Tuo; Sun, Hanbo; Toga, Arthur W; Dinov, Ivo DScientific reports.2019 Apr 12;30979917
Reproducible big data science: A case study in continuous FAIRness.Madduri, Ravi; Chard, Kyle; D'Arcy, Mike; Jung, Segun C; Rodriguez, Alexis; Sulakhe, Dinanath; Deutsch, Eric; Funk, Cory; Heavner, Ben; Richards, Matthew; Shannon, Paul; Glusman, Gustavo; Price, Nathan; Kesselman, Carl; Foster, IanPloS one.2019;30973881
Modeling Dynamic Missingness of Implicit Feedback for Recommendation.Wang, Menghan; Gong, Mingming; Zheng, Xiaolin; Zhang, KunAdvances in neural information processing systems.2018 Dec;30971864
Multi-domain Causal Structure Learning in Linear Systems.Ghassami, AmirEmad; Kiyavash, Negar; Huang, Biwei; Zhang, KunAdvances in neural information processing systems.2018 Dec;30971863
A data citation roadmap for scholarly data repositories.Fenner, Martin; Crosas, Mercè; Grethe, Jeffrey S; Kennedy, David; Hermjakob, Henning; Rocca-Serra, Phillippe; Durand, Gustavo; Berjon, Robin; Karcher, Sebastian; Martone, Maryann; Clark, TimScientific data.2019 04 10;30971690
HDDA: DataSifter: statistical obfuscation of electronic health records and other sensitive datasets.Marino, Simeone; Zhou, Nina; Zhao, Yi; Wang, Lu; Wu, Qiucheng; Dinov, Ivo DJournal of statistical computation and simulation.2018;30962669
Causal Discovery from Discrete Data using Hidden Compact Representation.Cai, Ruichu; Qiao, Jie; Zhang, Kun; Zhang, Zhenjie; Hao, ZhifengAdvances in neural information processing systems.2018 Dec;30956519
Unveiling the Kinomes of Leishmania infantum and L. braziliensis Empowers the Discovery of New Kinase Targets and Antileishmanial Compounds.Borba, Joyce V B; Silva, Arthur C; Ramos, Pablo I P; Grazzia, Nathalia; Miguel, Danilo C; Muratov, Eugene N; Furnham, Nicholas; Andrade, Carolina HComputational and structural biotechnology journal.2019;30949306
Learning one's genetic risk changes physiology independent of actual genetic risk.Turnwald, Bradley P; Goyer, J Parker; Boles, Danielle Z; Silder, Amy; Delp, Scott L; Crum, Alia JNature human behaviour.2019 Jan;30932047
Snorkel MeTaL: Weak Supervision for Multi-Task Learning.Ratner, Alex; Hancock, Braden; Dunnmon, Jared; Goldman, Roger; Ré, ChristopherProceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.).2018 Jun;30931438
Learning the Network Structure of Heterogeneous Data via Pairwise Exponential Markov Random Fields.Park, Youngsuk; Hallac, David; Boyd, Stephen; Leskovec, JureProceedings of machine learning research.2017 Apr;30931433
Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data.Kochunov, Peter; Patel, Binish; Ganjgahi, Habib; Donohue, Brian; Ryan, Meghann; Hong, Elliot L; Chen, Xu; Adhikari, Bhim; Jahanshad, Neda; Thompson, Paul M; Van't Ent, Dennis; den Braber, Anouk; de Geus, Eco J C; Brouwer, Rachel M; Boomsma, Dorret I; Hulshoff Pol, Hilleke E; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Nichols, Thomas EFrontiers in neuroinformatics.2019;30914942
Standardizing Analytic Methods and Reporting in Activity Monitor Validation Studies.Welk, Gregory J; Bai, Yang; Lee, Jung-Min; Godino, Job; Saint-Maurice, Pedro F; Carr, LucasMedicine and science in sports and exercise.2019 08;30913159
Anticipating innovations in structural biology.Berman, Helen M; Lawson, Catherine L; Vallat, Brinda; Gabanyi, Margaret JQuarterly reviews of biophysics.2018 01;30912485
Mechanical activation of noncoding-RNA-mediated regulation of disease-associated phenotypes in human cardiomyocytes.Kumar, Aditya; Thomas, Stephanie K; Wong, Kirsten C; Lo Sardo, Valentina; Cheah, Daniel S; Hou, Yang-Hsun; Placone, Jesse K; Tenerelli, Kevin P; Ferguson, William C; Torkamani, Ali; Topol, Eric J; Baldwin, Kristin K; Engler, Adam JNature biomedical engineering.2019 Feb;30911429
Comparison of blockchain platforms: a systematic review and healthcare examples.Kuo, Tsung-Ting; Zavaleta Rojas, Hugo; Ohno-Machado, LucilaJournal of the American Medical Informatics Association : JAMIA.2019 05 01;30907419
Creating a digital memory notebook application for individuals with mild cognitive impairment to support everyday functioning.Raghunath, Nisha; Dahmen, Jessamyn; Brown, Katelyn; Cook, Diane; Schmitter-Edgecombe, MaureenDisability and rehabilitation. Assistive technology2020 0530907223
iSurvive: An Interpretable, Event-time Prediction Model for mHealth.Dempsey, Walter H; Moreno, Alexander; Scott, Christy K; Dennis, Michael L; Gustafson, David H; Murphy, Susan A; Rehg, James MProceedings of machine learning research.2017;30906932
ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data.Manjunath, Mohith; Zhang, Yi; Yeo, Steve H; Sobh, Omar; Russell, Nathan; Followell, Christian; Bushell, Colleen; Ravaioli, Umberto; Song, Jun SPeerJ. Computer science.2018;30906871
Concordance of genetic variation that increases risk for tourette syndrome and that influences its underlying neurocircuitry.Mufford, Mary; Cheung, Josh; Jahanshad, Neda; van der Merwe, Celia; Ding, Linda; Groenewold, Nynke; Koen, Nastassja; Chimusa, Emile R; Dalvie, Shareefa; Ramesar, Raj; Knowles, James A; Lochner, Christine; Hibar, Derrek P; Paschou, Peristera; van den Heuvel, Odile A; Medland, Sarah E; Scharf, Jeremiah M; Mathews, Carol A; Thompson, Paul M; Stein, Dan J; Psychiatric Genomics Consortium - Tourette Syndrome working groupTranslational psychiatry.2019 Mar 22;30902966
The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia: design, results and future prospects.Middeldorp, Christel M; Felix, Janine F; Mahajan, Anubha; EArly Genetics Lifecourse Epidemiology (EAGLE) consortium; Early Growth Genetics (EGG) consortium; McCarthy, Mark IEuropean journal of epidemiology.2019 Mar;30887376
Learning the Structure of Generative Models without Labeled Data.Bach, Stephen H; He, Bryan; Ratner, Alexander; Ré, ChristopherProceedings of machine learning research.2017 Aug;30882087
ShortFuse: Biomedical Time Series Representations in the Presence of Structured Information.Fiterau, Madalina; Bhooshan, Suvrat; Fries, Jason; Bournhonesque, Charles; Hicks, Jennifer; Halilaj, Eni; Ré, Christopher; Delp, ScottProceedings of machine learning research.2017 Aug;30882086
Ancestral characterization of 1018 cancer cell lines highlights disparities and reveals gene expression and mutational differences.Kessler, Michael D; Bateman, Nicholas W; Conrads, Thomas P; Maxwell, George L; Dunning Hotopp, Julie C; O'Connor, Timothy DCancer.2019 Mar 13;30865299
When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data.Gürsoy, Gamze; Harmanci, Arif; Tang, Haixu; Ayday, Erman; Brenner, Steven EPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing201930864339
AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets.Hu, Zhiyue Tom; Ye, Yuting; Newbury, Patrick A; Huang, Haiyan; Chen, BinPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2019;30864327
Mapping causal pathways from genetics to neuropsychiatric disorders using genome-wide imaging genetics: Current status and future directions.Le, Brandon D; Stein, Jason LPsychiatry and clinical neurosciences.2019 Jul;30864184
Risk Factors for Development of Carbapenem Resistance Among Gram-Negative Rods.Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James AOpen forum infectious diseases.2019 Mar;30863785
SynSys: A Synthetic Data Generation System for Healthcare Applications.Dahmen, Jessamyn; Cook, DianeSensors (Basel, Switzerland).2019 Mar 08;30857130
Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications.Sigdel, Dibakar; Kyi, Vincent; Zhang, Aiden; Setty, Shaun P; Liem, David A; Shi, Yu; Wang, Xuan; Shen, Jiaming; Wang, Wei; Han, JiaWei; Ping, PeipeiJournal of visualized experiments : JoVE.2019 02 23;30855564
Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX.Wang, Wenhao; Chen, Guoxing; Pan, Xiaorui; Zhang, Yinqian; Wang, XiaoFeng; Bindschaedler, Vincent; Tang, Haixu; Gunter, Carl AConference on Computer and Communications Security : proceedings of the ... conference on computer and communications security. ACM Conference on Computer and Communications Security.2017 Oct-Nov;30853868
Unsupervised classification of multi-omics data during cardiac remodeling using deep learning.Chung, Neo Christopher; Mirza, Bilal; Choi, Howard; Wang, Jie; Wang, Ding; Ping, Peipei; Wang, WeiMethods (San Diego, Calif.).2019 Mar 07;30853547
Leveraging Big Data to Transform Drug Discovery.Glicksberg, Benjamin S; Li, Li; Chen, Rong; Dudley, Joel; Chen, BinMethods in molecular biology (Clifton, N.J.).2019;30848458
How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM).Küçük McGinty, Hande; Visser, Ubbo; Schürer, StephanMethods in molecular biology (Clifton, N.J.).2019;30848456
Resting-state brain information flow predicts cognitive flexibility in humans.Chén, Oliver Y; Cao, Hengyi; Reinen, Jenna M; Qian, Tianchen; Gou, Jiangtao; Phan, Huy; De Vos, Maarten; Cannon, Tyrone DScientific reports.2019 03 07;30846746
Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity.Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon ECurrent biology : CB.2019 Mar 04;30836076
Federated discovery and sharing of genomic data using Beacons.Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, SerenaNature biotechnology.2019 03;30833764
Distributed learning from multiple EHR databases: Contextual embedding models for medical events.Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, QiJournal of biomedical informatics.2019 Apr;30825539
Enhancing safe routes to school programs through community-engaged citizen science: two pilot investigations in lower density areas of Santa Clara County, California, USA.Rodriguez, Nicole M; Arce, Alisa; Kawaguchi, Alice; Hua, Jenna; Broderick, Bonnie; Winter, Sandra J; King, Abby CBMC public health.2019 Mar 01;30823917
A Probabilistic Model to Support Radiologists' Classification Decisions in Mammography Practice.Zeng, Jiaming; Gimenez, Francisco; Burnside, Elizabeth S; Rubin, Daniel L; Shachter, RossMedical decision making : an international journal of the Society for Medical Decision Making.2019 04;30819048
Genetic Markers of ADHD-Related Variations in Intracranial Volume.Klein, Marieke; Walters, Raymond K; Demontis, Ditte; Stein, Jason L; Hibar, Derrek P; Adams, Hieab H; Bralten, Janita; Roth Mota, Nina; Schachar, Russell; Sonuga-Barke, Edmund; Mattheisen, Manuel; Neale, Benjamin M; Thompson, Paul M; Medland, Sarah E; Børglum, Anders D; Faraone, Stephen V; Arias-Vasquez, Alejandro; Franke, BarbaraThe American journal of psychiatry.2019 03 01;30818988
Improving breast cancer risk prediction by using demographic risk factors, abnormality features on mammograms and genetic variants.Feld, Shara I; Woo, Kaitlin M; Alexandridis, Roxana; Wu, Yirong; Liu, Jie; Peissig, Peggy; Onitilo, Adedayo A; Cox, Jennifer; Page, C David; Burnside, Elizabeth SAMIA ... Annual Symposium proceedings. AMIA Symposium.2018;30815167
Privacy-preserving biomedical data dissemination via a hybrid approach.Jiang, Yichen; Wang, Chenghong; Wu, Zhixuan; Du, Xin; Wang, ShuangAMIA ... Annual Symposium proceedings. AMIA Symposium.2018;30815160
Automated Population of an i2b2 Clinical Data Warehouse using FHIR.Solbrig, Harold R; Hong, Na; Murphy, Shawn N; Jiang, GuoqianAMIA ... Annual Symposium proceedings. AMIA Symposium.2018;30815141
Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP.Hong, Na; Wen, Andrew; Mojarad, Majid Rastegar; Sohn, Sunghwan; Liu, Hongfang; Jiang, GuoqianAMIA ... Annual Symposium proceedings. AMIA Symposium.2018;30815098
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0).Mi, Huaiyu; Muruganujan, Anushya; Huang, Xiaosong; Ebert, Dustin; Mills, Caitlin; Guo, Xinyu; Thomas, Paul DNature protocols.2019 03;30804569
Pubertal maturation and sex effects on the default-mode network connectivity implicated in mood dysregulation.Ernst, Monique; Benson, Brenda; Artiges, Eric; Gorka, Adam X; Lemaitre, Herve; Lago, Tiffany; Miranda, Ruben; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Translational psychiatry.2019 Feb 25;30804326
Just-in-Time but Not Too Much: Determining Treatment Timing in Mobile Health.Liao, Peng; Dempsey, Walter; Sarker, Hillol; Hossain, Syed Monowar; Al'absi, Mustafa; Klasnja, Predrag; Murphy, SusanProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies.2018 Dec;30801052
A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards: From Sequencer to Electronic Health Record.Campbell, Walter S; Carter, Alexis B; Cushman-Vokoun, Allison M; Greiner, Timothy C; Dash, Rajesh C; Routbort, Mark; de Baca, Monica E; Campbell, James RThe Journal of molecular diagnostics : JMD.2019 Feb 20;30797065
Estimating feedforward and feedback effective connections from fMRI time series: Assessments of statistical methods.Sanchez-Romero, Ruben; Ramsey, Joseph D; Zhang, Kun; Glymour, Madelyn R K; Huang, Biwei; Glymour, ClarkNetwork neuroscience (Cambridge, Mass.).2019;30793083
Wearable Sleep Technology in Clinical and Research Settings.DE Zambotti, Massimiliano; Cellini, Nicola; Goldstone, Aimée; Colrain, Ian M; Baker, Fiona CMedicine and science in sports and exercise.2019 07;30789439
Crowdsourcing to delineate skin affected by chronic graft-vs-host disease.Tkaczyk, Eric R; Coco, Joseph R; Wang, Jianing; Chen, Fuyao; Ye, Cheng; Jagasia, Madan H; Dawant, Benoit M; Fabbri, DanielSkin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI).2019 Jul;30786065
The variable quality of metadata about biological samples used in biomedical experiments.Gonçalves, Rafael S; Musen, Mark AScientific data.2019 Feb 19;30778255
Racial Differences in Maintaining Optimal Health Behaviors Into Middle Age.Booth 3rd, John N; Allen, Norrina B; Calhoun, David; Carson, April P; Deng, Luqin; Goff Jr, David C; Redden, David T; Reis, Jared P; Shimbo, Daichi; Shikany, James M; Sidney, Stephen; Spring, Bonnie; Lewis, Cora E; Muntner, PaulAmerican journal of preventive medicine.2019 Mar;30777156
Instance-Specific Bayesian Network Structure Learning.Jabbari, Fattaneh; Visweswaran, Shyam; Cooper, Gregory FProceedings of machine learning research.2018 Sep;30775723
An Integrated Analysis of Neural Network Correlates of Categorical and Dimensional Models of Attention-Deficit/Hyperactivity Disorder.Pruim, Raimon H R; Beckmann, Christian F; Oldehinkel, Marianne; Oosterlaan, Jaap; Heslenfeld, Dirk; Hartman, Catharina A; Hoekstra, Pieter J; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Mennes, MaartenBiological psychiatry. Cognitive neuroscience and neuroimaging.2019 05;30773473
Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders.Pearl, Jocelynn R; Colantuoni, Carlo; Bergey, Dani E; Funk, Cory C; Shannon, Paul; Basu, Bijoya; Casella, Alex M; Oshone, Rediet T; Hood, Leroy; Price, Nathan D; Ament, Seth ACell systems.2019 02 27;30772379
Progressive brain atrophy in chronically infected and treated HIV+ individuals.Nir, Talia M; Jahanshad, Neda; Ching, Christopher R K; Cohen, Ronald A; Harezlak, Jaroslaw; Schifitto, Giovanni; Lam, Hei Y; Hua, Xue; Zhong, Jianhui; Zhu, Tong; Taylor, Michael J; Campbell, Thomas B; Daar, Eric S; Singer, Elyse J; Alger, Jeffry R; ThompsJournal of neurovirology.2019 Feb 14;30767174
Evolution of resilience in protein interactomes across the tree of life.Zitnik, Marinka; Sosi?, Rok; Feldman, Marcus W; Leskovec, JureProceedings of the National Academy of Sciences of the United States of America.2019 Mar 05;30765515
Hyperbolic Wasserstein Distance for Shape Indexing.Shi, Jie; Wang, YalinIEEE transactions on pattern analysis and machine intelligence.2019 Feb 08;30763239
DPPred: An Effective Prediction Framework with Concise Discriminative Patterns.Shang, Jingbo; Jiang, Meng; Tong, Wenzhu; Xiao, Jinfeng; Peng, Jian; Han, Jiawei; Pooled Resource Open-Access ALS Clinical Trials Consortium*IEEE transactions on knowledge and data engineering.2018 Jul;30745791
Feasibility of using social media to monitor outdoor air pollution in London, England.Hswen, Yulin; Qin, Qiuyuan; Brownstein, John S; Hawkins, Jared BPreventive medicine.2019 04;30742873
Feature extraction for phenotyping from semantic and knowledge resources.Ning, Wenxin; Chan, Stephanie; Beam, Andrew; Yu, Ming; Geva, Alon; Liao, Katherine; Mullen, Mary; Mandl, Kenneth D; Kohane, Isaac; Cai, Tianxi; Yu, ShengJournal of biomedical informatics.2019 Mar;30738949
ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model.Yu, Yue; Ruddy, Kathryn J; Hong, Na; Tsuji, Shintaro; Wen, Andrew; Shah, Nilay D; Jiang, GuoqianJournal of biomedical informatics.2019 Mar;30738946
Objective risk stratification of prostate cancer using machine learning and radiomics applied to multiparametric magnetic resonance images.Varghese, Bino; Chen, Frank; Hwang, Darryl; Palmer, Suzanne L; De Castro Abreu, Andre Luis; Ukimura, Osamu; Aron, Monish; Aron, Manju; Gill, Inderbir; Duddalwar, Vinay; Pandey, GauravScientific reports.2019 Feb 07;30733585
Glycoproteomic Profiling Provides Candidate Myocardial Infarction Predictors of Later Progression to Heart Failure.Deleon-Pennell, Kristine Y; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry LACS omega.2019 Jan 31;30729226
Predicting opioid dependence from electronic health records with machine learning.Ellis, Randall J; Wang, Zichen; Genes, Nicholas; Ma'ayan, AviBioData mining.2019;30728857
The Cortical Neuroimmune Regulator TANK Affects Emotional Processing and Enhances Alcohol Drinking: A Translational Study.Müller, Christian P; Chu, Congying; Qin, Liya; Liu, Chunyu; Xu, Bing; Gao, He; Ruggeri, Barbara; Hieber, Saskia; Schneider, Julia; Jia, Tianye; Tay, Nicole; Akira, Shizuo; Satoh, Takashi; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Bakalkin, Georgy; Liu, Yun; Desrivières, Sylvane; Elliott, Paul; Eulenburg, Volker; Levy, Daniel; Crews, Fulton; Schumann, GunterCerebral cortex (New York, N.Y. : 1991).2019 04 01;30721969
Adaptive Identification of Cortical and Subcortical Imaging Markers of Early Life Stress and Posttraumatic Stress Disorder.Salminen, Lauren E; Morey, Rajendra A; Riedel, Brandalyn C; Jahanshad, Neda; Dennis, Emily L; Thompson, Paul MJournal of neuroimaging : official journal of the American Society of Neuroimaging.2019 Feb 03;30714246
Selecting precise reference normal tissue samples for cancer research using a deep learning approach.Zeng, William Z D; Glicksberg, Benjamin S; Li, Yangyan; Chen, BinBMC medical genomics.2019 Jan 31;30704474
Automatic real-time gait event detection in children using deep neural networks.Kidzi?ski, ?ukasz; Delp, Scott; Schwartz, MichaelPloS one.2019;30703141
An Acute Randomized Controlled Trial of Noninvasive Peripheral Nerve Stimulation in Essential Tremor.Pahwa, Rajesh; Dhall, Rohit; Ostrem, Jill; Gwinn, Ryder; Lyons, Kelly; Ro, Susie; Dietiker, Cameron; Luthra, Nijee; Chidester, Paula; Hamner, Samuel; Ross, Erika; Delp, ScottNeuromodulation : journal of the International Neuromodulation Society.2019 Jul;30701655
Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD.Chen, Guocai; Jia, Yuxi; Zhu, Lisha; Li, Ping; Zhang, Lin; Tao, Cui; Jim Zheng, WBMC medical informatics and decision making.2019 Jan 31;30700303
Concordance of genetic variation that increases risk for anxiety disorders and posttraumatic stress disorders and that influences their underlying neurocircuitry.van der Merwe, Celia; Jahanshad, Neda; Cheung, Josh W; Mufford, Mary; Groenewold, Nynke A; Koen, Nastassja; Ramesar, Rajkumar; Dalvie, Shareefa; ENIGMA Consortium PGC-PTSD; Knowles, James A; Hibar, Derrek P; Nievergelt, Caroline M; Koenen, Karestan C; Liberzon, Israel; Ressler, Kerry J; Medland, Sarah E; Morey, Rajendra A; Thompson, Paul M; Stein, Dan JJournal of affective disorders.2019 02 15;30699873
Machine Learning and Integrative Analysis of Biomedical Big Data.Mirza, Bilal; Wang, Wei; Wang, Jie; Choi, Howard; Chung, Neo Christopher; Ping, PeipeiGenes.2019 01 28;30696086
Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data.Grossman, Robert LTrends in genetics : TIG.2019 Mar;30691868
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics.Hoffmann, Nils; Rein, Joel; Sachsenberg, Timo; Hartler, Jürgen; Haug, Kenneth; Mayer, Gerhard; Alka, Oliver; Dayalan, Saravanan; Pearce, Jake T M; Rocca-Serra, Philippe; Qi, Da; Eisenacher, Martin; Perez-Riverol, Yasset; Vizcaíno, Juan Antonio; Salek, Reza M; Neumann, Steffen; Jones, Andrew RAnalytical chemistry.2019 Mar 05;30688441
The principles of tomorrow's university.Katz, Daniel S; Allen, Gabrielle; Barba, Lorena A; Berg, Devin R; Bik, Holly; Boettiger, Carl; Borgman, Christine L; Brown, C Titus; Buck, Stuart; Burd, Randy; de Waard, Anita; Eve, Martin Paul; Granger, Brian E; Greenberg, Josh; Howe, Adina; Howe, Bill; Khanna, May; Killeen, Timothy L; Mayernik, Matthew; McKiernan, Erin; Mentzel, Chris; Merchant, Nirav; Niemeyer, Kyle E; Noren, Laura; Nusser, Sarah M; Reed, Daniel A; Seidel, Edward; Smith, MacKenzie; Spies, Jeffrey R; Turk, Matt; Van Horn, John D; Walsh, JayF1000Research.2018;30687499
Context-Specific Nested Effects Models.Sverchkov, Yuriy; Ho, Yi-Hsuan; Gasch, Audrey; Craven, MarkResearch in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005-).2018 Apr;30680375
Reproducible grey matter patterns index a multivariate, global alteration of brain structure in schizophrenia and bipolar disorder.Schwarz, Emanuel; Doan, Nhat Trung; Pergola, Giulio; Westlye, Lars T; Kaufmann, Tobias; Wolfers, Thomas; Brecheisen, Ralph; Quarto, Tiziana; Ing, Alex J; Carlo, Pasquale Di; Gurholt, Tiril P; Harms, Robbert L; Noirhomme, Quentin; Moberget, Torgeir; Agartz, Ingrid; Andreassen, Ole A; Bellani, Marcella; Bertolino, Alessandro; Blasi, Giuseppe; Brambilla, Paolo; Buitelaar, Jan K; Cervenka, Simon; Flyckt, Lena; Frangou, Sophia; Franke, Barbara; Hall, Jeremy; Heslenfeld, Dirk J; Kirsch, Peter; McIntosh, Andrew M; Nöthen, Markus M; Papassotiropoulos, Andreas; de Quervain, Dominique J-F; Rietschel, Marcella; Schumann, Gunter; Tost, Heike; Witt, Stephanie H; Zink, Mathias; Meyer-Lindenberg, Andreas; IMAGEMEND Consortium, Karolinska Schizophrenia Project (KaSP) ConsortiumTranslational psychiatry.2019 Jan 17;30664633
A Data Analysis Method for Using Longitudinal Binary Outcome Data from a SMART to Compare Adaptive Interventions.Dziak, John J; Yap, Jamie R T; Almirall, Daniel; McKay, James R; Lynch, Kevin G; Nahum-Shani, InbalMultivariate behavioral research.2019 Jan 20;30663401
A Potential Role for the STXBP5-AS1 Gene in Adult ADHD Symptoms.Arias-Vásquez, A; Groffen, A J; Spijker, S; Ouwens, K G; Klein, M; Vojinovic, D; Galesloot, T E; Bralten, J; Hottenga, J J; van der Most, P J; Kattenberg, V M; Pool, R; Nolte, I M; Penninx, B W J H; Fedko, I O; Dolan, C V; Nivard, M G; den Braber, A; van Duijn, C M; Hoekstra, P J; Buitelaar, J K; Kiemeney, L A; Hoogman, M; Middeldorp, C M; Draisma, H H M; Vermeulen, S H; Sánchez-Mora, C; Ramos-Quiroga, J A; Ribasés, M; EAGLE-ADHD Consortium; Hartman, C A; Kooij, J J S; Amin, N; Smit, A B; Franke, B; Boomsma, D IBehavior genetics.2019 05;30659475
PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient.Kalari, Krishna R; Sinnwell, Jason P; Thompson, Kevin J; Tang, Xiaojia; Carlson, Erin E; Yu, Jia; Vedell, Peter T; Ingle, James N; Weinshilboum, Richard M; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Suman, VeraJCO clinical cancer informatics.2018 12;30652605
Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.Dudenkov, Tanda M; Liu, Duan; Cairns, Junmei; Devarajan, Sandhya; Zhuang, Yongxian; Ingle, James N; Buzdar, Aman U; Robson, Mark E; Kubo, Michiaki; Batzler, Anthony; Barman, Poulami; Jenkins, Gregory D; Carlson, Erin E; Goetz, Matthew P; Northfelt, Donald W; Moreno-Aspitia, Alvaro; Desta, Zeruesenay; Reid, Joel M; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard MClinical pharmacology and therapeutics.2019 Jan 16;30648747
Development and Validation of an Electronic Health Record-Based Machine Learning Model to Estimate Delirium Risk in Newly Hospitalized Patients Without Known Cognitive Impairment.Wong, Andrew; Young, Albert T; Liang, April S; Gonzales, Ralph; Douglas, Vanja C; Hadley, DexterJAMA network open.2018 08 03;30646095
Grey Matter Volume Differences Associated with Extremely Low Levels of Cannabis Use in Adolescence.Orr, Catherine; Spechler, Philip; Cao, Zhipeng; Albaugh, Matthew; Chaarani, Bader; Mackey, Scott; D'Souza, Deepak; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Radhakrishnan, Rajiv; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra; Garavan, HughThe Journal of neuroscience : the official journal of the Society for Neuroscience.2019 Mar 06;30643026
The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology.Schnetz, Michael P; Hochheiser, Harry S; Danks, David J; Landsittel, Douglas P; Vogt, Keith M; Ibinson, James W; Whitehurst, Steven L; McDermott, Sean P; Duque, Melissa Giraldo; Kaynar, Ata MBMC medical research methodology.2019 Jan 14;30642260
Creating custom Foldit puzzles for teaching biochemistry.Dsilva, Lorna; Mittal, Shubhi; Koepnick, Brian; Flatten, Jeff; Cooper, Seth; Horowitz, ScottBiochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.2019 Jan 14;30638297
Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes.Hejblum, Boris P; Weber, Griffin M; Liao, Katherine P; Palmer, Nathan P; Churchill, Susanne; Shadick, Nancy A; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, TianxiScientific data.2019 Jan 08;30620344
Analytic Tools for Post-traumatic Epileptogenesis Biomarker Search in Multimodal Dataset of an Animal Model and Human Patients.Duncan, Dominique; Barisano, Giuseppe; Cabeen, Ryan; Sepehrband, Farshid; Garner, Rachael; Braimah, Adebayo; Vespa, Paul; Pitkänen, Asla; Law, Meng; Toga, Arthur WFrontiers in neuroinformatics.2018;30618695
Decreased brain connectivity in smoking contrasts with increased connectivity in drinking.Cheng, Wei; Rolls, Edmund T; Robbins, Trevor W; Gong, Weikang; Liu, Zhaowen; Lv, Wujun; Du, Jingnan; Wen, Hongkai; Ma, Liang; Quinlan, Erin Burke; Garavan, Hugh; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Smolka, Michael N; Schumann, Gunter; Kendrick, Keith; Feng, JianfengeLife.2019 Jan 08;30616717
Notch signaling activation induces cell death in MAPKi-resistant melanoma cells.Mikheil, Dareen M; Prabhakar, Kirthana; Arshad, Ayyan; Rodriguez, Carlos I; Newton, Michael A; Setaluri, VijayasaradhiPigment cell & melanoma research.2019 Jan 07;30614626
A Monte Carlo Approach to Skill-Based Automated Playtesting.Horn, Britton; Miller, Josh Aaron; Smith, Gillian; Cooper, SethProceedings. AAAI Artificial Intelligence and Interactive Digital Entertainment Conference.2018 Nov;30613687
Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.Soler Artigas, María; Sánchez-Mora, Cristina; Rovira, Paula; Richarte, Vanesa; Garcia-Martínez, Iris; Pagerols, Mireia; Demontis, Ditte; Stringer, Sven; ADHD Group of the Psychiatric Genomics Consortium, International Cannabis Consortium; Vink, Jacqueline M; Børglum, Anders D; Neale, Benjamin M; Franke, Barbara; Faraone, Stephen V; Casas, Miguel; Ramos-Quiroga, Josep Antoni; Ribasés, MartaMolecular psychiatry.2020 Oct;30610198
Using High-Resolution Variant Frequencies Empowers Clinical Genome Interpretation and Enables Investigation of Genetic Architecture.Whiffin, Nicola; Roberts, Angharad M; Minikel, Eric; Zappala, Zach; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Harrison, Steven M; Thomson, Kate L; Sage, Helen; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel G; Ware, James SAmerican journal of human genetics.2019 01 03;30609406
Discovering functional impacts of miRNAs in cancers using a causal deep learning model.Chen, Lujia; Lu, XinghuaBMC medical genomics.2018 Dec 31;30598118
Potential corner case cautions regarding publicly available implementations of the National Cancer Institute's nonwear/wear classification algorithm for accelerometer data.Moore 4th, Hyatt E; Haydel, K Farish; Banda, Jorge A; Fiterau, Madalina; Desai, Manisha; Robinson, Thomas NPloS one.2018;30596771
Maximizing the promise of citizen science to advance health and prevent disease.King, Abby C; Winter, Sandra J; Chrisinger, Benjamin W; Hua, Jenna; Banchoff, Ann WPreventive medicine.2019 Feb;30593793
BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2.Cline, Melissa S; Liao, Rachel G; Parsons, Michael T; Paten, Benedict; Alquaddoomi, Faisal; Antoniou, Antonis; Baxter, Samantha; Brody, Larry; Cook-Deegan, Robert; Coffin, Amy; Couch, Fergus J; Craft, Brian; Currie, Robert; Dlott, Chloe C; Dolman, Lena; den Dunnen, Johan T; Dyke, Stephanie O M; Domchek, Susan M; Easton, Douglas; Fischmann, Zachary; Foulkes, William D; Garber, Judy; Goldgar, David; Goldman, Mary J; Goodhand, Peter; Harrison, Steven; Haussler, David; Kato, Kazuto; Knoppers, Bartha; Markello, Charles; Nussbaum, Robert; Offit, Kenneth; Plon, Sharon E; Rashbass, Jem; Rehm, Heidi L; Robson, Mark; Rubinstein, Wendy S; Stoppa-Lyonnet, Dominique; Tavtigian, Sean; Thorogood, Adrian; Zhang, Can; Zimmermann, Marc; BRCA Challenge Authors; Burn, John; Chanock, Stephen; Rätsch, Gunnar; Spurdle, Amanda BPLoS genetics.2018 12;30586411
Pharmacokinetic-Pharmacodynamic interaction associated with venlafaxine-XR remission in patients with major depressive disorder with history of citalopram / escitalopram treatment failure.Ahmed, Ahmed T; Biernacka, Joanna M; Jenkins, Gregory; Rush, A John; Shinozaki, Gen; Veldic, Marin; Kung, Simon; Bobo, William V; Hall-Flavin, Daniel K; Weinshilboum, Richard M; Wang, Liewei; Frye, Mark AJournal of affective disorders.2019 03 01;30578947
A concise and persistent feature to study brain resting-state network dynamics: Findings from the Alzheimer's Disease Neuroimaging Initiative.Kuang, Liqun; Han, Xie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin; Alzheimer's Disease Neuroimaging InitiativeHuman brain mapping.2019 Mar;30569583
BMI-related cortical morphometry changes are associated with altered white matter structure.Medic, Nenad; Kochunov, Peter; Ziauddeen, Hisham; Ersche, Karen D; Nathan, Pradeep J; Ronan, Lisa; Fletcher, Paul CInternational journal of obesity (2005).2019 03;30568264
Using machine learning to identify health outcomes from electronic health record data.Wong, Jenna; Horwitz, Mara Murray; Zhou, Li; Toh, SengweeCurrent epidemiology reports.2018 Dec;30555773
Exchangeable Markov survival processes and weak continuity of predictive distributions.Dempsey, Walter; McCullagh, PeterElectronic journal of statistics.2017;30555616
Uncovering Biologically Coherent Peripheral Signatures of Health and Risk for Alzheimer's Disease in the Aging Brain.Riedel, Brandalyn C; Daianu, Madelaine; Ver Steeg, Greg; Mezher, Adam; Salminen, Lauren E; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging InitiativeFrontiers in aging neuroscience.2018;30555318
Stochastic Learning for Sparse Discrete Markov Random Fields with Controlled Gradient Approximation Error.Geng, Sinong; Kuang, Zhaobin; Liu, Jie; Wright, Stephen; Page, DavidUncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence.2018 Aug;30555282
Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity.Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon ECurrent biology : CB.2019 Jan 07;30554901
A nurse-driven method for developing artificial intelligence in ''smart'' homes for aging-in-place.Fritz, Roschelle L; Dermody, GordanaNursing outlook.2018 Nov 23;30551883
A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization.Kuang, Zhaobin; Bao, Yujia; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Willett, Rebecca; Page, DavidMethods in molecular biology (Clifton, N.J.).2019;30547447
ADAPTIVE GRADIENT DESCENT OPTIMIZATION OF INITIAL MOMENTA FOR GEODESIC SHOOTING IN DIFFEOMORPHISMS.Fleishman, Greg M; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017 Apr;30546823
Monitoring Online Discussions About Suicide Among Twitter Users With Schizophrenia: Exploratory Study.Hswen, Yulin; Naslund, John A; Brownstein, John S; Hawkins, Jared BJMIR mental health.2018 Dec 13;30545811
Peer victimization and its impact on adolescent brain development and psychopathology.Quinlan, Erin Burke; Barker, Edward D; Luo, Qiang; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN ConsortiumMolecular psychiatry.2020 11;30542059
Age-Related Differences in Brain Morphology and the Modifiers in Middle-Aged and Older Adults.Zhao, Lu; Matloff, William; Ning, Kaida; Kim, Hosung; Dinov, Ivo D; Toga, Arthur WCerebral cortex (New York, N.Y. : 1991).2019 09 13;30535294
Validity of Privacy-Protecting Analytical Methods That Use Only Aggregate-Level Information to Conduct Multivariable-Adjusted Analysis in Distributed Data Networks.Li, Xiaojuan; Fireman, Bruce H; Curtis, Jeffrey R; Arterburn, David E; Fisher, David P; Moyneur, Érick; Gallagher, Mia; Raebel, Marsha A; Nowell, W Benjamin; Lagreid, Lindsay; Toh, SengweeAmerican journal of epidemiology.2019 Apr 01;30535131
atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding.Shin, Sunyoung; Hudson, Rebecca; Harrison, Christopher; Craven, Mark; Kele?, SündüzBioinformatics (Oxford, England).2019 08 01;30534948
Genetic analysis of neurodegenerative diseases in a pathology cohort.Blauwendraat, Cornelis; Pletnikova, Olga; Geiger, Joshua T; Murphy, Natalie A; Abramzon, Yevgeniya; Rudow, Gay; Mamais, Adamantios; Sabir, Marya S; Crain, Barbara; Ahmed, Sarah; Rosenthal, Liana S; Bakker, Catherine C; Faghri, Faraz; Chia, Ruth; Ding, JinNeurobiology of aging.2019 Apr;30528841
Unveiling the Role of the Most Impactful Cardiovascular Risk Locus through Haplotype Editing.Lo Sardo, Valentina; Chubukov, Pavel; Ferguson, William; Kumar, Aditya; Teng, Evan L; Duran, Michael; Zhang, Lei; Cost, Gregory; Engler, Adam J; Urnov, Fyodor; Topol, Eric J; Torkamani, Ali; Baldwin, Kristin KCell.2018 Dec 13;30528432
Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma.Hong, Na; Zhang, Ning; Wu, Huawei; Lu, Shanshan; Yu, Yue; Hou, Li; Lu, Yinying; Liu, Hongfang; Jiang, GuoqianBMC medical informatics and decision making.2018 12 07;30526572
Allele-Specific Methylation of SPDEF: A Novel Moderator of Psychosocial Stress and Substance Abuse.Tay, Nicole; Macare, Christine; Liu, Yun; Ruggeri, Barbara; Jia, Tianye; Chu, Congying; Biondo, Francesca; Ing, Alex; Luo, Qiang; Sarkysian, Daniil; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Frieling, Helge; Bleich, Stefan; Barker, Edward D; Syvänen, Ann-Christine; Rüegg, Joëlle; Ekström, Tomas J; Bakalkin, Georgy; Schumann, Gunter; IMAGEN ConsortiumThe American journal of psychiatry.2019 02 01;30525907
Collaboration Matters: Honey Bee Health as a Transdisciplinary Model for Understanding Real-World Complexity.Suryanarayanan, Sainath; Kleinman, Daniel Lee; Gratton, Claudio; Toth, Amy; Guedot, Christelle; Groves, Russell; Piechowski, John; Moore, Brad; Hagedorn, Deborah; Kauth, Dayton; Swan, Heather; Celley, MaryBioscience.2018 Dec 01;30524133
A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry.Swearingen, Kristian E; Eng, Jimmy K; Shteynberg, David; Vigdorovich, Vladimir; Springer, Timothy A; Mendoza, Luis; Sather, D Noah; Deutsch, Eric W; Kappe, Stefan H I; Moritz, Robert LJournal of proteome research.2019 Feb 01;30523691
The Role of the Aryl Hydrocarbon Receptor (AHR) in Immune and Inflammatory Diseases.Neavin, Drew R; Liu, Duan; Ray, Balmiki; Weinshilboum, Richard MInternational journal of molecular sciences.2018 Dec 03;30513921
Practical Model Selection for Prospective Virtual Screening.Liu, Shengchao; Alnammi, Moayad; Ericksen, Spencer S; Voter, Andrew F; Ananiev, Gene E; Keck, James L; Hoffmann, F Michael; Wildman, Scott A; Gitter, AnthonyJournal of chemical information and modeling.2019 Jan 28;30500183
Genomic kinship construction to enhance genetic analyses in the human connectome project data.Kochunov, Peter; Donohue, Brian; Mitchell, Braxton D; Ganjgahi, Habib; Adhikari, Bhim; Ryan, Meghann; Medland, Sarah E; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Fieremans, Els; Novikov, Dmitry S; Marcus, Daniel; Van Essen, David C; Glahn, David Human brain mapping.2019 Apr 01;30496643
High-frequency actionable pathogenic exome variants in an average-risk cohort.Rego, Shannon; Dagan-Rosenfeld, Orit; Zhou, Wenyu; Sailani, M Reza; Limcaoco, Patricia; Colbert, Elizabeth; Avina, Monika; Wheeler, Jessica; Craig, Colleen; Salins, Denis; Röst, Hannes L; Dunn, Jessilyn; McLaughlin, Tracey; Steinmetz, Lars M; Bernstein, Jonathan A; Snyder, Michael PCold Spring Harbor molecular case studies.2018 12;30487145
Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions.Schleifer, Charles; Lin, Amy; Kushan, Leila; Ji, Jie Lisa; Yang, Genevieve; Bearden, Carrie E; Anticevic, AlanThe Journal of neuroscience : the official journal of the Society for Neuroscience.2019 Feb 13;30478034
Protein Inference Using PIA Workflows and PSI Standard File Formats.Uszkoreit, Julian; Perez-Riverol, Yasset; Eggers, Britta; Marcus, Katrin; Eisenacher, MartinJournal of proteome research.2019 02 01;30474983
Reply to: New Meta- and Mega-analyses of Magnetic Resonance Imaging Findings in Schizophrenia: Do They Really Increase Our Knowledge About the Nature of the Disease Process?van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Clark, Vincent P; Mueller, Bryon A; de Zwarte, Sonja M C; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Gurholt, Tiril P; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Catts, Stanley; Fullerton, Janice M; Green, Melissa J; Henskens, Frans; Jablensky, Assen; Mowry, Bryan J; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Hong, Elliot; Kochunov, Peter; Gur, Raquel E; Gur, Ruben C; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; Potkin, Steven G; Preda, Adrian; Fan, Fengmei; Ehrlich, Stefan; King, Margaret D; De Haan, Lieuwe; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; Pomarol-Clotet, Edith; Kelly, Sinead; Ciufolini, Simone; Radua, Joaquim; Murray, Robin; Marques, Tiago Reis; Simmons, Andrew; Borgwardt, Stefan; Schönborn-Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Yun, Je-Yeon; Cannon, Dara M; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; McIntosh, Andrew M; Whalley, Heather C; Knöchel, Christian; Oertel-Knöchel, Viola; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica ABiological psychiatry.2019 04 01;30470561
Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities.Zitnik, Marinka; Nguyen, Francis; Wang, Bo; Leskovec, Jure; Goldenberg, Anna; Hoffman, Michael MAn international journal on information fusion.2019 Oct;30467459
Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder.Athreya, Arjun; Iyer, Ravishankar; Neavin, Drew; Wang, Liewei; Weinshilboum, Richard; Kaddurah-Daouk, Rima; Rush, John; Frye, Mark; Bobo, WilliamIEEE computational intelligence magazine.2018 Aug;30467458
EDGE EXCHANGEABLE MODELS FOR INTERACTION NETWORKS.Crane, Harry; Dempsey, WalterJournal of the American Statistical Association.2018;30467447
Assessing Time-Varying Causal Effect Moderation in Mobile Health.Boruvka, Audrey; Almirall, Daniel; Witkiewitz, Katie; Murphy, Susan AJournal of the American Statistical Association.2018;30467446
Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers.Lituiev, Dmytro S; Trivedi, Hari; Panahiazar, Maryam; Norgeot, Beau; Seo, Youngho; Franc, Benjamin; Harnish, Roy; Kawczynski, Michael; Hadley, DexterJournal of digital imaging.2019 Apr;30465142
Repurposing Citizen Science Games as Software Tools for Professional Scientists.Cooper, Seth; Sterling, Amy L R; Kleffner, Robert; Silversmith, William M; Siegel, Justin BFDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games.2018 Aug;30465045
Learning Time Series Detection Models from Temporally Imprecise Labels.Adams, Roy J; Marlin, Benjamin MProceedings of machine learning research.2017 Apr;30465043
Yum-Me: A Personalized Nutrient-Based Meal Recommender System.Yang, Longqi; Hsieh, Cheng-Kang; Yang, Hongjian; Pollak, John P; Dell, Nicola; Belongie, Serge; Cole, Curtis; Estrin, DeborahACM transactions on information systems.2017 Aug;30464375
Model-Based and Model-Free Techniques for Amyotrophic Lateral Sclerosis Diagnostic Prediction and Patient Clustering.Tang, Ming; Gao, Chao; Goutman, Stephen A; Kalinin, Alexandr; Mukherjee, Bhramar; Guan, Yuanfang; Dinov, Ivo DNeuroinformatics.2018 Nov 20;30460455
A reference set of curated biomedical data and metadata from clinical case reports.Caufield, J Harry; Zhou, Yijiang; Garlid, Anders O; Setty, Shaun P; Liem, David A; Cao, Quan; Lee, Jessica M; Murali, Sanjana; Spendlove, Sarah; Wang, Wei; Zhang, Li; Sun, Yizhou; Bui, Alex; Hermjakob, Henning; Watson, Karol E; Ping, PeipeiScientific data.2018 Nov 20;30457569
Mutations of the mitochondrial carrier translocase channel subunit TIM22 cause early-onset mitochondrial myopathy.Pacheu-Grau, David; Callegari, Sylvie; Emperador, Sonia; Thompson, Kyle; Aich, Abhishek; Topol, Sarah E; Spencer, Emily G; McFarland, Robert; Ruiz-Pesini, Eduardo; Torkamani, Ali; Taylor, Robert W; Montoya, Julio; Rehling, PeterHuman molecular genetics.2018 12 01;30452684
BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud.Torre, Denis; Lachmann, Alexander; Ma'ayan, AviCell systems.2018 Nov 08;30447998
Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease.Tu, Yanshuai; Wen, Chengfeng; Zhang, Wen; Wu, Jianfeng; Zhang, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Reiman, Eric M; Wang, YalinConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference.2018 Jul;30440425
Elevated allostatic load early in the course of schizophrenia.Savransky, Anya; Chiappelli, Joshua; Fisseha, Feven; Wisner, Krista M; Xiaoming, Du; Mirmomen, S Milad; Jones, Aaron D; Adhikari, Bhim M; Bruce, Heather A; Rowland, Laura M; Hong, L ElliotTranslational psychiatry.2018 Nov 12;30420620
A conceptual framework for clinicians working with artificial intelligence and health-assistive Smart Homes.Dermody, Gordana; Fritz, RoschelleNursing inquiry.2018 Nov 12;30417510
rConverse: Moment by Moment Conversation Detection Using a Mobile Respiration Sensor.Bari, Rummana; Adams, Roy J; Rahman, Mahbubur; Parsons, Megan Battles; Buder, Eugene H; Kumar, SantoshProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies.2018 Mar;30417165
Citizen Science for Mining the Biomedical Literature.Tsueng, Ginger; Nanis, Steven M; Fouquier, Jennifer; Good, Benjamin M; Su, Andrew ICitizen science : theory and practice.2016;30416754
Understanding the Hidden Complexity of Latin American Population Isolates.Mooney, Jazlyn A; Huber, Christian D; Service, Susan; Sul, Jae Hoon; Marsden, Clare D; Zhang, Zhongyang; Sabatti, Chiara; Ruiz-Linares, Andrés; Bedoya, Gabriel; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes; Freimer, Nelson; Lohmueller, Kirk EAmerican journal of human genetics.2018 11 01;30401458
A Deep Learning Model to Predict a Diagnosis of Alzheimer Disease by Using 18F-FDG PET of the Brain.Ding, Yiming; Sohn, Jae Ho; Kawczynski, Michael G; Trivedi, Hari; Harnish, Roy; Jenkins, Nathaniel W; Lituiev, Dmytro; Copeland, Timothy P; Aboian, Mariam S; Mari Aparici, Carina; Behr, Spencer C; Flavell, Robert R; Huang, Shih-Ying; Zalocusky, Kelly A; Nardo, Lorenzo; Seo, Youngho; Hawkins, Randall A; Hernandez Pampaloni, Miguel; Hadley, Dexter; Franc, Benjamin LRadiology.2019 Feb;30398430
Estimating the effect size of surgery to improve walking in children with cerebral palsy from retrospective observational clinical data.Rajagopal, Apoorva; Kidzi?ski, ?ukasz; McGlaughlin, Alec S; Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael HScientific reports.2018 Nov 05;30397268
The PRIDE database and related tools and resources in 2019: improving support for quantification data.Perez-Riverol, Yasset; Csordas, Attila; Bai, Jingwen; Bernal-Llinares, Manuel; Hewapathirana, Suresh; Kundu, Deepti J; Inuganti, Avinash; Griss, Johannes; Mayer, Gerhard; Eisenacher, Martin; Pérez, Enrique; Uszkoreit, Julian; Pfeuffer, Julianus; Sachsenberg, Timo; Yilmaz, Sule; Tiwary, Shivani; Cox, Jürgen; Audain, Enrique; Walzer, Mathias; Jarnuczak, Andrew F; Ternent, Tobias; Brazma, Alvis; Vizcaíno, Juan AntonioNucleic acids research.2019 Jan 08;30395289
Matrix metalloproteinase-12 as an endogenous resolution promoting factor following myocardial infarction.Mouton, Alan J; Rivera Gonzalez, Osvaldo J; Kaminski, Amanda R; Moore, Edwin T; Lindsey, Merry LPharmacological research.2018 Nov;30394317
Whole-Genome Alignment and Comparative Annotation.Armstrong, Joel; Fiddes, Ian T; Diekhans, Mark; Paten, BenedictAnnual review of animal biosciences.2019 Feb 15;30379572
Chemistry-Wide Association Studies (CWAS): A Novel Framework for Identifying and Interpreting Structure-Activity Relationships.Low, Yen S; Alves, Vinicius M; Fourches, Denis; Sedykh, Alexander; Andrade, Carolina Horta; Muratov, Eugene N; Rusyn, Ivan; Tropsha, AlexanderJournal of chemical information and modeling.2018 11 26;30376324
Feasibility and Acceptability of Mobile Phone-Based Auto-Personalized Physical Activity Recommendations for Chronic Pain Self-Management: Pilot Study on Adults.Rabbi, Mashfiqui; Aung, Min Sh; Gay, Geri; Reid, M Cary; Choudhury, TanzeemJournal of medical Internet research.2018 Oct 26;30368433
Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms.Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, RoseStroke.2018 Sep;30354989
Automated feature selection of predictors in electronic medical records data.Gronsbell, Jessica; Minnier, Jessica; Yu, Sheng; Liao, Katherine; Cai, TianxiBiometrics.2019 03;30353541
atSNPInfrastructure, a case study for searching billions of records while providing significant cost savings over cloud providers.IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum : [proceedings]. IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum.2018 May;30349760
Chromosome assembly of large and complex genomes using multiple references.Kolmogorov, Mikhail; Armstrong, Joel; Raney, Brian J; Streeter, Ian; Dunn, Matthew; Yang, Fengtang; Odom, Duncan; Flicek, Paul; Keane, Thomas M; Thybert, David; Paten, Benedict; Pham, SonGenome research.2018 11;30341161
Mega-Analysis of Gray Matter Volume in Substance Dependence: General and Substance-Specific Regional Effects.Mackey, Scott; Allgaier, Nicholas; Chaarani, Bader; Spechler, Philip; Orr, Catherine; Bunn, Janice; Allen, Nicholas B; Alia-Klein, Nelly; Batalla, Albert; Blaine, Sara; Brooks, Samantha; Caparelli, Elisabeth; Chye, Yann Ying; Cousijn, Janna; Dagher, Alain; Desrivieres, Sylvane; Feldstein-Ewing, Sarah; Foxe, John J; Goldstein, Rita Z; Goudriaan, Anna E; Heitzeg, Mary M; Hester, Robert; Hutchison, Kent; Korucuoglu, Ozlem; Li, Chiang-Shan R; London, Edythe; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; May, April; Momenan, Reza; Morales, Angelica; Paulus, Martin P; Pearlson, Godfrey; Rousseau, Marc-Etienne; Salmeron, Betty Jo; Schluter, Renée; Schmaal, Lianne; Schumann, Gunter; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot A; Sinha, Rajita; Solowij, Nadia; Tapert, Susan; Uhlmann, Anne; Veltman, Dick; van Holst, Ruth; Whittle, Sarah; Wright, Margaret J; Yücel, Murat; Zhang, Sheng; Yurgelun-Todd, Deborah; Hibar, Derrek P; Jahanshad, Neda; Evans, Alan; Thompson, Paul M; Glahn, David C; Conrod, Patricia; Garavan, Hugh; ENIGMA Addiction Working GroupThe American journal of psychiatry.2019 Feb 01;30336705
Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments.Bacher, Rhonda; Leng, Ning; Chu, Li-Fang; Ni, Zijian; Thomson, James A; Kendziorski, Christina; Stewart, RonBMC bioinformatics.2018 Oct 16;30326833
Why surveillance of antimicrobial resistance needs to be automated and comprehensive.O'Brien, Thomas F; Clark, Adam; Peters, Rob; Stelling, JohnJournal of global antimicrobial resistance.2019 06;30326273
Automated detection of outbreaks of antimicrobial-resistant bacteria in Japan.Tsutsui, A; Yahara, K; Clark, A; Fujimoto, K; Kawakami, S; Chikumi, H; Iguchi, M; Yagi, T; Baker, M A; O'Brien, T; Stelling, JThe Journal of hospital infection.2018 Oct 12;30321629
Logistic regression model training based on the approximate homomorphic encryption.Kim, Andrey; Song, Yongsoo; Kim, Miran; Lee, Keewoo; Cheon, Jung HeeBMC medical genomics.2018 Oct 11;30309349
Syntactic Patterns Improve Information Extraction for Medical Search.Patel, Roma; Yang, Yinfei; Marshall, Iain; Nenkova, Ani; Wallace, Byron CProceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting.2018 Jun;30306147
A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature.Nye, Benjamin; Jessy Li, Junyi; Patel, Roma; Yang, Yinfei; Marshall, Iain J; Nenkova, Ani; Wallace, Byron CProceedings of the conference. Association for Computational Linguistics. Meeting.2018 Jul;30305770
Mapping the Heterogeneous Phenotype of Schizophrenia and Bipolar Disorder Using Normative Models.Wolfers, Thomas; Doan, Nhat Trung; Kaufmann, Tobias; Alnæs, Dag; Moberget, Torgeir; Agartz, Ingrid; Buitelaar, Jan K; Ueland, Torill; Melle, Ingrid; Franke, Barbara; Andreassen, Ole A; Beckmann, Christian F; Westlye, Lars T; Marquand, Andre FJAMA psychiatry.2018 11 01;30304337
Patchwork of contrasting medication cultures across the USA.Melamed, Rachel D; Rzhetsky, AndreyNature communications.2018 10 09;30301884
Typing tumors using pathways selected by somatic evolution.Wang, Sheng; Ma, Jianzhu; Zhang, Wei; Shen, John Paul; Huang, Justin; Peng, Jian; Ideker, TreyNature communications.2018 Oct 08;30297789
A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts.Caufield, John Harry; Liem, David A; Garlid, Anders O; Zhou, Yijiang; Watson, Karol; Bui, Alex A T; Wang, Wei; Ping, PeipeiJournal of visualized experiments : JoVE.2018 Sep 20;30295669
Framing the challenges of artificial intelligence in medicine.Yu, Kun-Hsing; Kohane, Isaac SBMJ quality & safety.2019 03;30291179
Targeted sequencing identifies a missense variant in the BEST3 gene associated with antihypertensive response to hydrochlorothiazide.Singh, Sonal; Wang, Zhiying; Shahin, Mohamed H; Langaee, Taimour Y; Gong, Yan; Turner, Stephen T; Chapman, Arlene B; Gums, John G; McDonough, Caitrin W; Bailey, Kent R; Beitelshees, Amber L; Cooper-DeHoff, Rhonda M; Scherer, Steve; Boerwinkle, Eric; JohnsPharmacogenetics and genomics.2018 Nov;30289819
mCerebrum: A Mobile Sensing Software Platform for Development and Validation of Digital Biomarkers and Interventions.Hossain, Syed Monowar; Hnat, Timothy; Saleheen, Nazir; Nasrin, Nusrat Jahan; Noor, Joseph; Ho, Bo-Jhang; Condie, Tyson; Srivastava, Mani; Kumar, SantoshProceedings of the ... International Conference on Embedded Networked Sensor Systems. International Conference on Embedded Networked Sensor Systems.2017 Nov;30288504
Approximating Isotope Distributions of Biomolecule Fragments.Goldfarb, Dennis; Lafferty, Michael J; Herring, Laura E; Wang, Wei; Major, Michael BACS omega.2018 Sep 30;30288463
Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia.Sønderby, Ida E; Gústafsson, Ómar; Doan, Nhat Trung; Hibar, Derrek P; Martin-Brevet, Sandra; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Michael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas; Blangero, John; Boomsma, Dorret I; Bralten, Janita; Brattbak, Hans-Richard; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Calhoun, Vince; Caspers, Svenja; Cavalleri, Gianpiero; Chen, Chi-Hua; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dale, Anders M; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivières, Sylvane; Donohoe, Gary; Draganski, Bogdan; Ehrlich, Stefan; Espeseth, Thomas; Fisher, Simon E; Franke, Barbara; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans; Groenewold, Nynke A; Haavik, Jan; Håberg, Asta; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Heinz, Andreas; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff, Hilleke E; Ikeda, Masashi; Jahanshad, Neda; Jernigan, Terry; Jockwitz, Christiane; Johansson, Stefan; Jonsdottir, Gudrun A; Jönsson, Erik G; Kahn, Rene; Kaufmann, Tobias; Kelly, Sinead; Kikuchi, Masataka; Knowles, Emma E M; Kolskår, Knut K; Kwok, John B; Hellard, Stephanie Le; Leu, Costin; Liu, Jingyu; Lundervold, Astri J; Lundervold, Arvid; Martin, Nicholas G; Mather, Karen; Mathias, Samuel R; McCormack, Mark; McMahon, Katie L; McRae, Allan; Milaneschi, Yuri; Moreau, Clara; Morris, Derek; Mothersill, David; Mühleisen, Thomas W; Murray, Robin; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel; Paus, Tomas; Pausova, Zdenka; Penninx, Brenda; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Pudas, Sara; Quinlan, Erin; Quintana, Daniel S; Reinbold, Céline S; Marques, Tiago Reis; Reymond, Alexandre; Richard, Genevieve; Rodriguez-Herreros, Borja; Roiz-Santiañez, Roberto; Rokicki, Jarek; Rucker, James; Sachdev, Perminder; Sanders, Anne-Marthe; Sando, Sigrid B; Schmaal, Lianne; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Sisodiya, Sanjay; Steen, Vidar M; Stein, Dan J; Steinberg, Stacy; Strike, Lachlan; Teumer, Alexander; Thalamuthu, Anbu; Tordesillas-Gutierrez, Diana; Turner, Jessica; Ueland, Torill; Uhlmann, Anne; Ulfarsson, Magnus O; van 't Ent, Dennis; van der Meer, Dennis; van Haren, Neeltje E M; Vaskinn, Anja; Vassos, Evangelos; Walters, G Bragi; Wang, Yunpeng; Wen, Wei; Whelan, Christopher D; Wittfeld, Katharina; Wright, Margie; Yamamori, Hidenaga; Zayats, Tetyana; Agartz, Ingrid; Westlye, Lars T; Jacquemont, Sébastien; Djurovic, Srdjan; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul; Andreassen, Ole A; 16p11.2 European Consortium, for the ENIGMA-CNV working groupMolecular psychiatry.2020 03;30283035
Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities.Halilaj, Eni; Rajagopal, Apoorva; Fiterau, Madalina; Hicks, Jennifer L; Hastie, Trevor J; Delp, Scott LJournal of biomechanics.2018 Sep 13;30279002
Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies.Wu, Yue; Hormozdiari, Farhad; Joo, Jong Wha J; Eskin, EleazarJournal of computational biology : a journal of computational molecular cell biology.2019 Nov;30272994
Hippocampal Shape Maturation in Childhood and Adolescence.Lynch, Kirsten M; Shi, Yonggang; Toga, Arthur W; Clark, Kristi A; Pediatric Imaging, Neurocognition and Genetics StudyCerebral cortex (New York, N.Y. : 1991).2019 08 14;30272143
Randomization-Based Statistical Inference: A Resampling and Simulation Infrastructure.Dinov, Ivo D; Palanimalai, Selvam; Khare, Ashwini; Christou, NicolasTeaching statistics.2018;30270947
Expanding the use of spectral libraries in proteomics.Deutsch, Eric W; Perez-Riverol, Yasset; Chalkley, Robert J; Wilhelm, Mathias; Tate, Stephen; Sachsenberg, Timo; Walzer, Mathias; Käll, Lukas; Delanghe, Bernard; Böcker, Sebastian; Schymanski, Emma L; Wilmes, Paul; Dorfer, Viktoria; Kuster, Bernhard; VoldeJournal of proteome research.2018 Oct 01;30270626
Structure and Protein Interaction-based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17.Zhang, Chengxin; Wei, Xiaoqiong; Omenn, Gilbert S; Zhang, YangJournal of proteome research.2018 Sep 28;30265558
Wearables and the medical revolution.Dunn, Jessilyn; Runge, Ryan; Snyder, MichaelPersonalized medicine.2018 09;30259801
Genetic risk for schizophrenia and autism, social impairment and developmental pathways to psychosis.Velthorst, Eva; Froudist-Walsh, Sean; Stahl, Eli; Ruderfer, Douglas; Ivanov, Ilyan; Buxbaum, Joseph; iPSYCH-Broad ASD Group, the IMAGEN consortiumTranslational psychiatry.2018 Sep 26;30258131
Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data.Köksal, Ali Sinan; Beck, Kirsten; Cronin, Dylan R; McKenna, Aaron; Camp, Nathan D; Srivastava, Saurabh; MacGilvray, Matthew E; Bodík, Rastislav; Wolf-Yadlin, Alejandro; Fraenkel, Ernest; Fisher, Jasmin; Gitter, AnthonyCell reports.2018 Sep 25;30257219
Smaller hippocampal CA1 subfield volume in posttraumatic stress disorder.Chen, Lyon W; Sun, Delin; Davis, Sarah L; Haswell, Courtney C; Dennis, Emily L; Swanson, Chelsea A; Whelan, Christopher D; Gutman, Boris; Jahanshad, Neda; Iglesias, Juan Eugenio; Thompson, Paul; Mid-Atlantic MIRECC Workgroup; Wagner, H Ryan; Saemann, PhilDepression and anxiety.2018 Nov;30256497
Associations Between Positron Emission Tomography Amyloid Pathology and Diffusion Tensor Imaging Brain Connectivity in Pre-Clinical Alzheimer's Disease.Hwang, Seong Jae; Adluru, Nagesh; Kim, Won Hwa; Johnson, Sterling C; Bendlin, Barbara B; Singh, VikasBrain connectivity.2019 03;30255713
All-night functional magnetic resonance imaging sleep studies.Moehlman, Thomas M; de Zwart, Jacco A; Chappel-Farley, Miranda G; Liu, Xiao; McClain, Irene B; Chang, Catie; Mandelkow, Hendrik; Özbay, Pinar S; Johnson, Nicholas L; Bieber, Rebecca E; Fernandez, Katharine A; King, Kelly A; Zalewski, Christopher K; Brewer, Carmen C; van Gelderen, Peter; Duyn, Jeff H; Picchioni, DanteJournal of neuroscience methods.2019 Mar 15;30243817
Mapping adolescent reward anticipation, receipt, and prediction error during the monetary incentive delay task.Cao, Zhipeng; Bennett, Marc; Orr, Catherine; Icke, Ilknur; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Whelan, Robert; IMAGEN ConsortiumHuman brain mapping.2019 01;30240509
Extracellular Matrix in Cardiovascular Pathophysiology.Bloksgaard, Maria; Lindsey, Merry L; Martinez-Lemus, Luis AAmerican journal of physiology. Heart and circulatory physiology.2018 Sep 21;30239231
Symptom dimensions in obsessive-compulsive disorder as predictors of neurobiology and treatment response.Thorsen, Anders Lillevik; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile ACurrent treatment options in psychiatry.2018 Mar;30237966
Flexible and Fast Mapping of Peptides to a Proteome with ProteoMapper.Mendoza, Luis; Deutsch, Eric W; Sun, Zhi; Campbell, David S; Shteynberg, David D; Moritz, Robert LJournal of proteome research.2018 Sep 28;30230343
AspEm: Embedding Learning by Aspects in Heterogeneous Information Networks.Shi, Yu; Gui, Huan; Zhu, Qi; Kaplan, Lance; Han, JiaweiProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2018;30221081
PReP: Path-Based Relevance from a Probabilistic Perspective in Heterogeneous Information Networks.Shi, Yu; Chan, Po-Wei; Zhuang, Honglei; Gui, Huan; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2017 Aug;30221026
Investigating inequities in hospital care among lesbian, gay, bisexual, and transgender (LGBT) individuals using social media.Hswen, Yulin; Sewalk, Kara C; Alsentzer, Emily; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared BSocial science & medicine (1982).2018 10;30219749
3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification.Kalinin, Alexandr A; Allyn-Feuer, Ari; Ade, Alex; Fon, Gordon-Victor; Meixner, Walter; Dilworth, David; Husain, Syed S; de Wett, Jeffrey R; Higgins, Gerald A; Zheng, Gen; Creekmore, Amy; Wiley, John W; Verdone, James E; Veltri, Robert W; Pienta, Kenneth J; Coffey, Donald S; Athey, Brian D; Dinov, Ivo DScientific reports.;30209281
A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways.Lu, Songjian; Fan, Xiaonan; Chen, Lujia; Lu, XinghuaPloS one.2018;30208101
SequencEnG: an Interactive Knowledge Base of Sequencing Techniques.Zhang, Yi; Manjunath, Mohith; Kim, Yeonsung; Heintz, Joerg; Song, Jun SBioinformatics (Oxford, England).2018 Sep 08;30202870
Collaborative Problem Solving in an Open-Ended Scientific Discovery Game.Bauer, Aaron; Popovi?, ZoranProceedings of the ACM on human-computer interaction.2017 Nov;30198019
Motor neuron loss and neuroinflammation in a model of ?-synuclein-induced neurodegeneration.Sorrentino, Zachary A; Xia, Yuxing; Funk, Cory; Riffe, Cara J; Rutherford, Nicola J; Ceballos Diaz, Carolina; Sacino, Amanda N; Price, Nathan D; Golde, Todd E; Giasson, Benoit I; Chakrabarty, ParamitaNeurobiology of disease.2018 Dec;30195075
The ventromedial prefrontal cortex: a putative locus for trait inattention.Albaugh, Matthew D; Potter, Alexandra SNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.2019 Jan;30194422
Efficacy of Contextually Tailored Suggestions for Physical Activity: A Micro-randomized Optimization Trial of HeartSteps.Klasnja, Predrag; Smith, Shawna; Seewald, Nicholas J; Lee, Andy; Hall, Kelly; Luers, Brook; Hekler, Eric B; Murphy, Susan AAnnals of behavioral medicine : a publication of the Society of Behavioral Medicine.2018 Sep 05;30192907
Mixed Graphical Models for Integrative Causal Analysis with Application to Chronic Lung Disease Diagnosis and Prognosis.Sedgewick, Andrew J; Buschur, Kristina; Shi, Ivy; Ramsey, Joseph D; Raghu, Vineet K; Manatakis, Dimitris V; Zhang, Yingze; Bon, Jessica; Chandra, Divay; Karoleski, Chad; Sciurba, Frank C; Spirtes, Peter; Glymour, Clark; Benos, Panayiotis VBioinformatics (Oxford, England).2018 Sep 05;30192904
A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol.Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Turner, Jessica; Grotegerd, Dominik; Dannlowski, Udo; Kugel, Harald; Engelen, Jennifer; Dietsche, Bruno; Krug, Axel; Kircher, Tilo; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Boedhoe, Premika S W; van der Werf, Ysbrand D; van den Heuvel, Odile A; Ipser, Jonathan; Uhlmann, Anne; Stein, Dan J; Dickie, Erin; Voineskos, Aristotle N; Malhotra, Anil K; Pizzagalli, Fabrizio; Calhoun, Vince D; Waller, Lea; Veer, Ilja M; Walter, Hernik; Buchanan, Robert W; Glahn, David C; Hong, L Elliot; Thompson, Paul M; Kochunov, PeterBrain imaging and behavior.;30191514
Generalized Score Functions for Causal Discovery.Huang, Biwei; Zhang, Kun; Lin, Yizhu; Schölkopf, Bernhard; Glymour, ClarkKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2018 Aug;30191079
The conserved protective cyclic AMP-phosphodiesterase function PDE4B is expressed in the adenoma and adjacent normal colonic epithelium of mammals and silenced in colorectal cancer.Pleiman, Jennifer K; Irving, Amy A; Wang, Zhishi; Toraason, Erik; Clipson, Linda; Dove, William F; Deming, Dustin A; Newton, Michael APLoS genetics.2018 09;30188895
Using structural MRI to identify bipolar disorders - 13 site machine learning study in 3020 individuals from the ENIGMA Bipolar Disorders Working Group.Nunes, Abraham; Schnack, Hugo G; Ching, Christopher R K; Agartz, Ingrid; Akudjedu, Theophilus N; Alda, Martin; Alnæs, Dag; Alonso-Lana, Silvia; Bauer, Jochen; Baune, Bernhard T; Bøen, Erlend; Bonnin, Caterina Del Mar; Busatto, Geraldo F; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Chaim-Avancini, Tiffany M; Dannlowski, Udo; Díaz-Zuluaga, Ana M; Dietsche, Bruno; Doan, Nhat Trung; Duchesnay, Edouard; Elvsåshagen, Torbjørn; Emden, Daniel; Eyler, Lisa T; Fatjó-Vilas, Mar; Favre, Pauline; Foley, Sonya F; Fullerton, Janice M; Glahn, David C; Goikolea, Jose M; Grotegerd, Dominik; Hahn, Tim; Henry, Chantal; Hibar, Derrek P; Houenou, Josselin; Howells, Fleur M; Jahanshad, Neda; Kaufmann, Tobias; Kenney, Joanne; Kircher, Tilo T J; Krug, Axel; Lagerberg, Trine V; Lenroot, Rhoshel K; López-Jaramillo, Carlos; Machado-Vieira, Rodrigo; Malt, Ulrik F; McDonald, Colm; Mitchell, Philip B; Mwangi, Benson; Nabulsi, Leila; Opel, Nils; Overs, Bronwyn J; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Redlich, Ronny; Roberts, Gloria; Rosa, Pedro G; Salvador, Raymond; Satterthwaite, Theodore D; Soares, Jair C; Stein, Dan J; Temmingh, Henk S; Trappenberg, Thomas; Uhlmann, Anne; van Haren, Neeltje E M; Vieta, Eduard; Westlye, Lars T; Wolf, Daniel H; Yüksel, Dilara; Zanetti, Marcus V; Andreassen, Ole A; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working GroupMolecular psychiatry.2020 Sep;30171211
Exogenous CXCL4 Infusion Inhibits Macrophage Phagocytosis by Limiting CD36 Signaling to Enhance Post-myocardial Infarction Cardiac Dilation and Mortality.Lindsey, Merry L; Jung, Mira; Yabluchanskiy, Andriy; Cannon, Presley L; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; DeLeon-Pennell, Kristine Y; Valerio, Fritz M; Harrison, Courtney L; Ripplinger, Crystal M; Hall, Michael E; Ma, YonggangCardiovascular research.2018 Aug 29;30169632
Maturation of the Human Cerebral Cortex During Adolescence: Myelin or Dendritic Arbor?Patel, Y; Shin, J; Gowland, P A; Pausova, Z; Paus, T; IMAGEN consortiumCerebral cortex (New York, N.Y. : 1991).2019 07 22;30169567
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.Bukhari, Syed Ahmad Chan; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Rubelt, Florian; Cheung, Kei-Hoi; Kleinstein, Steven HFrontiers in immunology.2018;30166985
Controlled feature selection and compressive big data analytics: Applications to biomedical and health studies.Marino, Simeone; Xu, Jiachen; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Dinov, Ivo DPloS one.2018;30161148
Smaller subcortical volume in Parkinson patients with rapid eye movement sleep behavior disorder.Kamps, Sanne; van den Heuvel, Odile A; van der Werf, Ysbrand D; Berendse, Henk W; Weintraub, Daniel; Vriend, ChrisBrain imaging and behavior.2019 Oct;30155787
Extracellular matrix roles in cardiorenal fibrosis: Potential therapeutic targets for CVD and CKD in the elderly.Toba, Hiroe; Lindsey, Merry LPharmacology & therapeutics.2018 Aug 25;30149103
Comparison of strategies for scalable causal discovery of latent variable models from mixed data.Raghu, Vineet K; Ramsey, Joseph D; Morris, Alison; Manatakis, Dimitrios V; Sprites, Peter; Chrysanthis, Panos K; Glymour, Clark; Benos, Panayiotis VInternational journal of data science and analytics.2018;30148202
HiGlass: web-based visual exploration and analysis of genome interaction maps.Kerpedjiev, Peter; Abdennur, Nezar; Lekschas, Fritz; McCallum, Chuck; Dinkla, Kasper; Strobelt, Hendrik; Luber, Jacob M; Ouellette, Scott B; Azhir, Alaleh; Kumar, Nikhil; Hwang, Jeewon; Lee, Soohyun; Alver, Burak H; Pfister, Hanspeter; Mirny, Leonid A; PaGenome biology.2018 08 24;30143029
Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy.Journal of proteome research.2018 Aug 31;30141336
Scoring Bayesian Networks of Mixed Variables.Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory FInternational journal of data science and analytics.2018 Aug;30140730
EarBit: Using Wearable Sensors to Detect Eating Episodes in Unconstrained Environments.Bedri, Abdelkareem; Li, Richard; Haynes, Malcolm; Kosaraju, Raj Prateek; Grover, Ishaan; Prioleau, Temiloluwa; Beh, Min Yan; Goel, Mayank; Starner, Thad; Abowd, GregoryProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies.2017 Sep;30135957
LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling.DeLeon-Pennell, Kristine Y; Mouton, Alan J; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry LBasic research in cardiology.2018 08 21;30132266
Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative.Halilaj, E; Le, Y; Hicks, J L; Hastie, T J; Delp, S LOsteoarthritis and cartilage.;30130590
Large Scale Semi-Automated Labeling of Routine Free-Text Clinical Records for Deep Learning.Trivedi, Hari M; Panahiazar, Maryam; Liang, April; Lituiev, Dmytro; Chang, Peter; Sohn, Jae Ho; Chen, Yunn-Yi; Franc, Benjamin L; Joe, Bonnie; Hadley, DexterJournal of digital imaging.2019 Feb;30128778
Variation graph toolkit improves read mapping by representing genetic variation in the reference.Garrison, Erik; Sirén, Jouni; Novak, Adam M; Hickey, Glenn; Eizenga, Jordan M; Dawson, Eric T; Jones, William; Garg, Shilpa; Markello, Charles; Lin, Michael F; Paten, Benedict; Durbin, RichardNature biotechnology.2018 Oct;30125266
HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS.Wu, Jianfeng; Zhang, Jie; Shi, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2018 Apr;30123414
COMT Val158Met Polymorphism and Social Impairment Interactively Affect Attention-Deficit Hyperactivity Symptoms in Healthy Adolescents.Millenet, Sabina K; Nees, Frauke; Heintz, Stefan; Bach, Christiane; Frank, Josef; Vollstädt-Klein, Sabine; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Fröhner, Juliane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaire, Herve; Martinot, Jean-Luc; Martinot, Marie-Laure P; Papadoulos, Dimitri O; Paus, Tomá?; Poustka, Luise; Rietschel, Marcella; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Banaschewski, Tobias; Hohmann, SarahFrontiers in genetics.;30108607
Distinct brain structure and behavior related to ADHD and conduct disorder traits.Bayard, Frida; Nymberg Thunell, Charlotte; Abé, Christoph; Almeida, Rita; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; Penttilä, Jani; Kappel, Viola; Grimmer, Yvonne; Fadai, Tahmine; van Noort, Betteke; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Petrovic, Predrag; IMAGEN ConsortiumMolecular psychiatry.2020 Nov;30108313
Iterative Design of Visual Analytics for a Clinician-in-the-loop Smart Home.Ghods, Alireza; Caffrey, Kathleen; Lin, Beiyu; Fraga, Kylie; Fritz, Roschelle; Schmitter-Edgecombe, Maureen; Hundhausen, Christopher; Cook, Diane JIEEE journal of biomedical and health informatics.2018 Aug 08;30106700
A neurobiological pathway to smoking in adolescence: TTC12-ANKK1-DRD2 variants and reward response.Macare, Christine; Ducci, Francesca; Zhang, Yuning; Ruggeri, Barbara; Jia, Tianye; Kaakinen, Marika; Kalsi, Gursharan; Charoen, Pimphen; Casoni, Filippo; Peters, Jan; Bromberg, Uli; Hill, Matthew; Buxton, Jessica; Blakemore, Alexandra; Veijola, Juha; Büchel, Christian; Banaschewski, Tobias; Bokde, Arun L W; Conrod, Patricia; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Martinot, Jean-Luc; Paus, Tomá?; Desrivières, Sylvane; Munafò, Marcus; Järvelin, Marjo-Riitta; Schumann, Gunter; IMAGEN ConsortiumEuropean neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology.2018 10;30104163
Linkage of the ACR National Mammography Database to the Network of State Cancer Registries: Proof of Concept Evaluation by the ACR National Mammography Database Committee.Zuley, Margarita L; Nishikawa, Robert M; Lee, Cindy S; Burnside, Elizabeth; Rosenberg, Robert; Sickles, Edward A; Berg, Wendie; Leung, Jessica; Harvey, Jennifer; Sengupta, Debapriya; Gur, DavidJournal of the American College of Radiology : JACR.2019 Jan;30100161
Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project.Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Snyder, Michael; Baker, Mark S; Deutsch, Eric WJournal of proteome research.2018 Aug 23;30099871
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.Carass, Aaron; Cuzzocreo, Jennifer L; Han, Shuo; Hernandez-Castillo, Carlos R; Rasser, Paul E; Ganz, Melanie; Beliveau, Vincent; Dolz, Jose; Ben Ayed, Ismail; Desrosiers, Christian; Thyreau, Benjamin; Romero, José E; Coupé, Pierrick; Manjón, José V; FonovNeuroImage.2018 Dec;30099076
Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals.Meyer, Wynn K; Jamison, Jerrica; Richter, Rebecca; Woods, Stacy E; Partha, Raghavendran; Kowalczyk, Amanda; Kronk, Charles; Chikina, Maria; Bonde, Robert K; Crocker, Daniel E; Gaspard, Joseph; Lanyon, Janet M; Marsillach, Judit; Furlong, Clement E; Clark, Nathan LScience (New York, N.Y.).2018 08 10;30093596
Attention deficit hyperactivity disorder symptoms as antecedents of later psychotic outcomes in 22q11.2 deletion syndrome.Niarchou, Maria; Chawner, Samuel J R A; Fiksinski, Ania; Vorstman, Jacob A S; Maeder, Johanna; Schneider, Maude; Eliez, Stephan; Armando, Marco; Pontillo, Maria; Vicari, Stefano; McDonald-McGinn, Donna M; Emanuel, Beverly S; Zackai, Elaine H; Bearden, Carrie E; Shashi, Vandana; Hooper, Stephen R; Owen, Michael J; Gur, Raquel E; Wray, Naomi R; van den Bree, Marianne B M; Thapar, Anita; International 22q11.2 Deletion Syndrome Brain and Behavior ConsortiumSchizophrenia research.2019 02;30093352
Web services for data warehouses: OMOP and PCORnet on i2b2.Klann, Jeffrey G; Phillips, Lori C; Herrick, Christopher; Joss, Matthew A H; Wagholikar, Kavishwar B; Murphy, Shawn NJournal of the American Medical Informatics Association : JAMIA.2018 10 01;30085008
A tissue-based draft map of the murine MHC class I immunopeptidome.Schuster, Heiko; Shao, Wenguang; Weiss, Tobias; Pedrioli, Patrick G A; Roth, Patrick; Weller, Michael; Campbell, David S; Deutsch, Eric W; Moritz, Robert L; Planz, Oliver; Rammensee, Hans-Georg; Aebersold, Ruedi; Caron, EtienneScientific data.2018 08 07;30084848
Network enhancement as a general method to denoise weighted biological networks.Wang, Bo; Pourshafeie, Armin; Zitnik, Marinka; Zhu, Junjie; Bustamante, Carlos D; Batzoglou, Serafim; Leskovec, JureNature communications.2018 08 06;30082777
Mapping and interpreting the dynamic connectivity of the brain.Chang, Catie; Keilholz, Shella; Miller, Robyn; Woolrich, MarkNeuroImage.2018 10 15;30075278
Examination of the Neural Basis of Psychoticlike Experiences in Adolescence During Reward Processing.Papanastasiou, Evangelos; Mouchlianitis, Elias; Joyce, Dan W; McGuire, Philip; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Spechler, Philip; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Shergill, Sukhwinder; IMAGEN ConsortiumJAMA psychiatry.2018 10 01;30073329
Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline.Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Fox, Peter T; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, PeterHuman brain mapping.2018 Dec;30052318
Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling.Kim, Hosung; Caldairou, Benoit; Bernasconi, Andrea; Bernasconi, NedaFrontiers in neuroinformatics.2018;30050423
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement.Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi PLoS computational biology.2018 07;30048444
Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging.Petrov, Dmitry; Gutman, Boris A; Yu, Shih-Hua Julie; van Erp, Theo G M; Turner, Jessica A; Schmaal, Lianne; Veltman, Dick; Wang, Lei; Alpert, Kathryn; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Ching, Christopher R K; Calhoun, Vince; Glahn, David; Satterthwaite, Theodore D; Andreasen, Ole Andreas; Borgwardt, Stefan; Howells, Fleur; Groenewold, Nynke; Voineskos, Aristotle; Radua, Joaquim; Potkin, Steven G; Crespo-Facorro, Benedicto; Tordesillas-Gutiérrez, Diana; Shen, Li; Lebedeva, Irina; Spalletta, Gianfranco; Donohoe, Gary; Kochunov, Peter; Rosa, Pedro G P; James, Anthony; Dannlowski, Udo; Baune, Bernhard T; Aleman, André; Gotlib, Ian H; Walter, Henrik; Walter, Martin; Soares, Jair C; Ehrlich, Stefan; Gur, Ruben C; Doan, N Trung; Agartz, Ingrid; Westlye, Lars T; Harrisberger, Fabienne; Riecher-Rössler, Anita; Uhlmann, Anne; Stein, Dan J; Dickie, Erin W; Pomarol-Clotet, Edith; Fuentes-Claramonte, Paola; Canales-Rodríguez, Erick Jorge; Salvador, Raymond; Huang, Alexander J; Roiz-Santiañez, Roberto; Cong, Shan; Tomyshev, Alexander; Piras, Fabrizio; Vecchio, Daniela; Banaj, Nerisa; Ciullo, Valentina; Hong, Elliot; Busatto, Geraldo; Zanetti, Marcus V; Serpa, Mauricio H; Cervenka, Simon; Kelly, Sinead; Grotegerd, Dominik; Sacchet, Matthew D; Veer, Ilya M; Li, Meng; Wu, Mon-Ju; Irungu, Benson; Walton, Esther; Thompson, Paul MMachine learning in medical imaging. MLMI (Workshop).2017 Sep;30035274
Learning causality and causality-related learning: some recent progress.Zhang, Kun; Schölkopf, Bernhard; Spirtes, Peter; Glymour, ClarkNational science review.2018 Jan;30034911
ENIGMA MILITARY BRAIN INJURY: A COORDINATED META-ANALYSIS OF DIFFUSION MRI FROM MULTIPLE COHORTS.Dennis, Emily L; Wilde, Elisabeth A; Newsome, Mary R; Scheibel, Randall S; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin S C; Drennon, Ann Marie; York, Gerald E; Bigler, Erin D; Abildskov, Tracy J; Taylor, Brian A; Jaramillo, Carlos A; Eapen, Blessen; Belanger, Heather; Gupta, Vikash; Morey, Rajendra; Haswell, Courtney; Levin, Harvey S; Hinds 2nd, Sidney R; Walker, William C; Thompson, Paul M; Tate, David FProceedings. IEEE International Symposium on Biomedical Imaging.2018 Apr;30034577
Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata.Jang, MiHyun; Patted, Tejal; Gil, Yolanda; Garijo, Daniel; Ratnakar, Varun; Ji, Jie; Wang, Prince; McMahon, Aggie; Thompson, Paul M; Jahanshad, NedaCEUR workshop proceedings.2017 Oct;30034319
Selecting Optimal Subset to release under Differentially Private M-estimators from Hybrid Datasets.Wang, Meng; Ji, Zhanglong; Kim, Hyeon-Eui; Wang, Shuang; Xiong, Li; Jiang, XiaoqianIEEE transactions on knowledge and data engineering.2018 Mar 01;30034201
Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans.Shiroishi, Mark S; Gupta, Vikash; Bigjahan, Bavrina; Cen, Steven Y; Rashid, Faisal; Hwang, Darryl H; Lerner, Alexander; Boyko, Orest B; Liu, Chia-Shang Jason; Law, Meng; Thompson, Paul M; Jahanshad, NedaProceedings of SPIE--the International Society for Optical Engineering.2017 Oct;30034079
Statistical considerations in reporting cardiovascular research.Lindsey, Merry L; Gray, Gillian A; Wood, Susan K; Curran-Everett, DouglasAmerican journal of physiology. Heart and circulatory physiology.2018 Aug 01;30028200
MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES.Zhang, Jie; Tu, Yanshuai; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2018 Apr;30023040
Comparison of privacy-protecting analytic and data-sharing methods: A simulation study.Yoshida, Kazuki; Gruber, Susan; Fireman, Bruce H; Toh, SengweePharmacoepidemiology and drug safety.2018 Sep;30022561
Toward Increasing Engagement in Substance Use Data Collection: Development of the Substance Abuse Research Assistant App and Protocol for a Microrandomized Trial Using Adolescents and Emerging Adults.Rabbi, Mashfiqui; Philyaw Kotov, Meredith; Cunningham, Rebecca; Bonar, Erin E; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, SusanJMIR research protocols.2018 Jul 18;30021714
Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass.Wang, Ana Y; Thuy-Boun, Peter S; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis WJournal of proteome research.2018 09 07;30019906
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.Baheti, Saurabh; Tang, Xiaojia; O'Brien, Daniel R; Chia, Nicholas; Roberts, Lewis R; Nelson, Heidi; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Kocher, Jean-Pierre A; Kalari, Krishna RBMC bioinformatics.2018 Jul 17;30016933
Neural correlates of cognitive function and symptoms in attention-deficit/hyperactivity disorder in adults.Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Lin, Dongdong; Jiang, Wenhao; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, JingyuNeuroImage. Clinical.2018;30013920
A synthetic-diploid benchmark for accurate variant-calling evaluation.Li, Heng; Bloom, Jonathan M; Farjoun, Yossi; Fleharty, Mark; Gauthier, Laura; Neale, Benjamin; MacArthur, DanielNature methods.2018 Aug;30013044
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata.Bukhari, Syed Ahmad Chan; Martínez-Romero, Marcos; O' Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Cheung, Kei-Hoi; Kleinstein, Steven HBMC bioinformatics.2018 Jul 16;30012108
Quantitative temporal analysis of protein dynamics in cardiac remodeling.McClatchy, Daniel B; Ma, Yuanhui; Liem, David A; Ng, Dominic C M; Ping, Peipei; Yates 3rd, John RJournal of molecular and cellular cardiology.2018 Aug;30009778
SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol.Jiang, Yichen; Hamer, Jenny; Wang, Chenghong; Jiang, Xiaoqian; Kim, Miran; Song, Yongsoo; Xia, Yuhou; Mohammed, Noman; Sadat, Md Nazmus; Wang, ShuangIEEE/ACM transactions on computational biology and bioinformatics.2019 Jan-Feb;29994005
SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution.Sadat, Md Nazmus; Al Aziz, Md Momin; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Wang, ShuangIEEE/ACM transactions on computational biology and bioinformatics.2019 Jan-Feb;29993695
Visual Analytics in Deep Learning: An Interrogative Survey for the Next Frontiers.Hohman, Fred Matthew; Kahng, Minsuk; Pienta, Robert; Chau, Duen HorngIEEE transactions on visualization and computer graphics.2018 Jun 04;29993551
Imaging genetics in neurodevelopmental psychopathology.Klein, Marieke; van Donkelaar, Marjolein; Verhoef, Ellen; Franke, BarbaraAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.2017 07;29984470
A Screening Rule for ?1-Regularized Ising Model Estimation.Kuang, Zhaobin; Geng, Sinong; Page, DavidAdvances in neural information processing systems.2017 Dec;29983538
Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge.Saul, Michael C; Blatti, Charles; Yang, Wei; Bukhari, Syed A; Shpigler, Hagai Y; Troy, Joseph M; Seward, Christopher H; Sloofman, Laura; Chandrasekaran, Sriram; Bell, Alison M; Stubbs, Lisa; Robinson, Gene E; Zhao, Sihai D; Sinha, SaurabhGenes, brain, and behavior.2018 Jul 02;29968347
Cortical Brain Abnormalities in 4474 Individuals With Schizophrenia and 5098 Control Subjects via the Enhancing Neuro Imaging Genetics Through Meta Analysis (ENIGMA) Consortium.van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Bustillo, Juan R; Clark, Vincent P; Agartz, Ingrid; Mueller, Bryon A; Cahn, Wiepke; de Zwarte, Sonja M C; Hulshoff Pol, Hilleke E; Kahn, René S; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Dale, Anders M; Doan, Nhat Trung; Gurholt, Tiril P; Hartberg, Cecilie B; Haukvik, Unn K; Jørgensen, Kjetil N; Lagerberg, Trine V; Melle, Ingrid; Westlye, Lars T; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Zilles, David; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Carr, Vaughan J; Catts, Stanley; Cropley, Vanessa L; Fullerton, Janice M; Green, Melissa J; Henskens, Frans A; Jablensky, Assen; Lenroot, Rhoshel K; Mowry, Bryan J; Michie, Patricia T; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Morris, Derek W; Hong, Elliot; Kochunov, Peter; Beard, Lauren M; Gur, Raquel E; Gur, Ruben C; Satterthwaite, Theodore D; Wolf, Daniel H; Belger, Aysenil; Brown, Gregory G; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; O'Leary, Daniel S; Potkin, Steven G; Preda, Adrian; Voyvodic, James; Lim, Kelvin O; McEwen, Sarah; Yang, Fude; Tan, Yunlong; Tan, Shuping; Wang, Zhiren; Fan, Fengmei; Chen, Jingxu; Xiang, Hong; Tang, Shiyou; Guo, Hua; Wan, Ping; Wei, Dong; Bockholt, Henry J; Ehrlich, Stefan; Wolthusen, Rick P F; King, Margaret D; Shoemaker, Jody M; Sponheim, Scott R; De Haan, Lieuwe; Koenders, Laura; Machielsen, Marise W; van Amelsvoort, Therese; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; McKenna, Peter J; Pomarol-Clotet, Edith; Salvador, Raymond; Corvin, Aiden; Donohoe, Gary; Kelly, Sinead; Whelan, Christopher D; Dickie, Erin W; Rotenberg, David; Voineskos, Aristotle N; Ciufolini, Simone; Radua, Joaquim; Dazzan, Paola; Murray, Robin; Reis Marques, Tiago; Simmons, Andrew; Borgwardt, Stefan; Egloff, Laura; Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Wang, Lei; Jönsson, Erik G; Koops, Sanne; Sommer, Iris E C; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Stephen, Julia M; Kwon, Jun Soo; Yun, Je-Yeon; Cannon, Dara M; McDonald, Colm; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Busatto, Geraldo F; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; Hagenaars, Saskia P; McIntosh, Andrew M; Whalley, Heather C; Lawrie, Stephen M; Knöchel, Christian; Oertel-Knöchel, Viola; Stäblein, Michael; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; McMahon, Agnes; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica ABiological psychiatry.2018 May 14;29960671
Prioritizing network communities.Zitnik, Marinka; Sosi?, Rok; Leskovec, JureNature communications.2018 06 29;29959323
SigMat: a classification scheme for gene signature matching.Xiao, Jinfeng; Blatti, Charles; Sinha, SaurabhBioinformatics (Oxford, England).2018 Jul 01;29950002
Modeling polypharmacy side effects with graph convolutional networks.Zitnik, Marinka; Agrawal, Monica; Leskovec, JureBioinformatics (Oxford, England).2018 07 01;29949996
Talking the Walk: Perceptions of Neighborhood Characteristics from Users of Open Streets Programs in Latin America and the USA.Zieff, Susan G; Musselman, Elaine A; Sarmiento, Olga L; Gonzalez, Silvia A; Aguilar-Farias, Nicolas; Winter, Sandra J; Hipp, J Aaron; Quijano, Karoll; King, Abby CJournal of urban health : bulletin of the New York Academy of Medicine.2018 Dec;29948785
Significant concordance of genetic variation that increases both the risk for obsessive-compulsive disorder and the volumes of the nucleus accumbens and putamen.Hibar, Derrek P; Cheung, Joshua W; Medland, Sarah E; Mufford, Mary S; Jahanshad, Neda; Dalvie, Shareefa; Ramesar, Raj; Stewart, Evelyn; van den Heuvel, Odile A; Pauls, David L; Knowles, James A; Stein, Dan J; Thompson, Paul M; Enhancing Neuro Imaging Genetics through Meta Analysis (ENIGMA) Consortium and International Obsessive Compulsive Disorder Foundation Genetics Collaborative (IOCDF-GC)The British journal of psychiatry : the journal of mental science.2018 Jul;29947313
Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.Smit, Dirk J A; Wright, Margaret J; Meyers, Jacquelyn L; Martin, Nicholas G; Ho, Yvonne Y W; Malone, Stephen M; Zhang, Jian; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Denys, Damiaan; Hansell, Narelle K; Hottenga, Jouke-Jan; McGue, Matt; van Beijsterveldt, Catharina E M; Jahanshad, Neda; Thompson, Paul M; Whelan, Christopher D; Medland, Sarah E; Porjesz, Bernice; Lacono, William G; Boomsma, Dorret IHuman brain mapping.2018 Jun 26;29947131
A design framework and exemplar metrics for FAIRness.Wilkinson, Mark D; Sansone, Susanna-Assunta; Schultes, Erik; Doorn, Peter; Bonino da Silva Santos, Luiz Olavo; Dumontier, MichelScientific data.2018 06 26;29944145
Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.Savage, Jeanne E; Jansen, Philip R; Stringer, Sven; Watanabe, Kyoko; Bryois, Julien; de Leeuw, Christiaan A; Nagel, Mats; Awasthi, Swapnil; Barr, Peter B; Coleman, Jonathan R I; Grasby, Katrina L; Hammerschlag, Anke R; Kaminski, Jakob A; Karlsson, Robert; Krapohl, Eva; Lam, Max; Nygaard, Marianne; Reynolds, Chandra A; Trampush, Joey W; Young, Hannah; Zabaneh, Delilah; Hägg, Sara; Hansell, Narelle K; Karlsson, Ida K; Linnarsson, Sten; Montgomery, Grant W; Muñoz-Manchado, Ana B; Quinlan, Erin B; Schumann, Gunter; Skene, Nathan G; Webb, Bradley T; White, Tonya; Arking, Dan E; Avramopoulos, Dimitrios; Bilder, Robert M; Bitsios, Panos; Burdick, Katherine E; Cannon, Tyrone D; Chiba-Falek, Ornit; Christoforou, Andrea; Cirulli, Elizabeth T; Congdon, Eliza; Corvin, Aiden; Davies, Gail; Deary, Ian J; DeRosse, Pamela; Dickinson, Dwight; Djurovic, Srdjan; Donohoe, Gary; Conley, Emily Drabant; Eriksson, Johan G; Espeseth, Thomas; Freimer, Nelson A; Giakoumaki, Stella; Giegling, Ina; Gill, Michael; Glahn, David C; Hariri, Ahmad R; Hatzimanolis, Alex; Keller, Matthew C; Knowles, Emma; Koltai, Deborah; Konte, Bettina; Lahti, Jari; Le Hellard, Stephanie; Lencz, Todd; Liewald, David C; London, Edythe; Lundervold, Astri J; Malhotra, Anil K; Melle, Ingrid; Morris, Derek; Need, Anna C; Ollier, William; Palotie, Aarno; Payton, Antony; Pendleton, Neil; Poldrack, Russell A; Räikkönen, Katri; Reinvang, Ivar; Roussos, Panos; Rujescu, Dan; Sabb, Fred W; Scult, Matthew A; Smeland, Olav B; Smyrnis, Nikolaos; Starr, John M; Steen, Vidar M; Stefanis, Nikos C; Straub, Richard E; Sundet, Kjetil; Tiemeier, Henning; Voineskos, Aristotle N; Weinberger, Daniel R; Widen, Elisabeth; Yu, Jin; Abecasis, Goncalo; Andreassen, Ole A; Breen, Gerome; Christiansen, Lene; Debrabant, Birgit; Dick, Danielle M; Heinz, Andreas; Hjerling-Leffler, Jens; Ikram, M Arfan; Kendler, Kenneth S; Martin, Nicholas G; Medland, Sarah E; Pedersen, Nancy L; Plomin, Robert; Polderman, Tinca J C; Ripke, Stephan; van der Sluis, Sophie; Sullivan, Patrick F; Vrieze, Scott I; Wright, Margaret J; Posthuma, DanielleNature genetics.2018 Jul;29942086
Fonduer: Knowledge Base Construction from Richly Formatted Data.Proceedings. ACM-Sigmod International Conference on Management of Data.2018 Jun;29937618
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.Readhead, Ben; Haure-Mirande, Jean-Vianney; Funk, Cory C; Richards, Matthew A; Shannon, Paul; Haroutunian, Vahram; Sano, Mary; Liang, Winnie S; Beckmann, Noam D; Price, Nathan D; Reiman, Eric M; Schadt, Eric E; Ehrlich, Michelle E; Gandy, Sam; Dudley, Joel TNeuron.2018 Jul 11;29937276
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.Stathias, Vasileios; Koleti, Amar; Vidovi?, Du?ica; Cooper, Daniel J; Jagodnik, Kathleen M; Terryn, Raymond; Forlin, Michele; Chung, Caty; Torre, Denis; Ayad, Nagi; Medvedovic, Mario; Ma'ayan, Avi; Pillai, Ajay; Schürer, Stephan CScientific data.2018 Jun 19;29917015
Ventromedial Prefrontal Volume in Adolescence Predicts Hyperactive/Inattentive Symptoms in Adulthood.Albaugh, Matthew D; Ivanova, Masha; Chaarani, Bader; Orr, Catherine; Allgaier, Nicholas; Althoff, Robert R; D' Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Penttilä, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra SCerebral cortex (New York, N.Y. : 1991).2019 05 01;29912404
Reg-ulating macrophage infiltration to alter wound healing following myocardial infarction.Lindsey, Merry LCardiovascular research.2018 Oct 01;29912288
A Hierarchical Framework for State-Space Matrix Inference and Clustering.Zuo, Chandler; Chen, Kailei; Hewitt, Kyle J; Bresnick, Emery H; Kele?, SündüzThe annals of applied statistics.2016 Sep;29910842
Causal Discovery from Temporally Aggregated Time Series.Gong, Mingming; Zhang, Kun; Schölkopf, Bernhard; Glymour, Clark; Tao, DachengUncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence.2017 Aug;29899680
Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation.Hanson, Casey; Cairns, Junmei; Wang, Liewei; Sinha, SaurabhGenome research.2018 08;29898900
Prompting Technology and Persons With Dementia: The Significance of Context and Communication.Braley, Rachel; Fritz, Rochelle; Van Son, Catherine R; Schmitter-Edgecombe, MaureenThe Gerontologist2019 01 0929897450
Large-scale mapping of cortical alterations in 22q11.2 deletion syndrome: Convergence with idiopathic psychosis and effects of deletion size.Sun, Daqiang; Ching, Christopher R K; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Villalon-Reina, Julio E; Qu, Xiaoping; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Vorstman, Jacob; Fiksinski, Ania; Koops, Sanne; Ruparel, Kosha; Roalf, David R; Gur, Raquel E; Schmitt, J Eric; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Bassett, Anne S; Chow, Eva W C; Butcher, Nancy J; Vila-Rodriguez, Fidel; Doherty, Joanne; Cunningham, Adam; van den Bree, Marianne B M; Linden, David E J; Moss, Hayley; Owen, Michael J; Murphy, Kieran C; McDonald-McGinn, Donna M; Emanuel, Beverly; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Bearden, Carrie EMolecular psychiatry.2018 Jun 13;29895892
The initiation of cannabis use in adolescence is predicted by sex-specific psychosocial and neurobiological features.Spechler, Philip A; Allgaier, Nicholas; Chaarani, Bader; Whelan, Robert; Watts, Richard; Orr, Catherine; Albaugh, Matthew D; D'Alberto, Nicholas; Higgins, Stephen T; Hudson, Kelsey E; Mackey, Scott; Potter, Alexandra; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Althoff, Robert R; Garavan, Hugh; IMAGEN ConsortiumThe European journal of neuroscience.2019 08;29889330
Network-based approaches to examining stress in the adolescent brain.Ho, Tiffany C; Dennis, Emily L; Thompson, Paul M; Gotlib, Ian HNeurobiology of stress.2018 Feb;29888310
A Crowdsourcing Framework for Medical Data Sets.Ye, Cheng; Coco, Joseph; Epishova, Anna; Hajaj, Chen; Bogardus, Henry; Novak, Laurie; Denny, Joshua; Vorobeychik, Yevgeniy; Lasko, Thomas; Malin, Bradley; Fabbri, DanielAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888085
Utility of Genetic Testing in Addition to Mammography for Determining Risk of Breast Cancer Depends on Patient Age.Feld, Shara I; Fan, Jun; Yuan, Ming; Wu, Yirong; Woo, Kaitlin M; Alexandridis, Roxana; Burnside, Elizabeth SAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888046
Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data.Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Liu, Sijia; Liu, Hongfang; Jiang, GuoqianAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888045
Real-time Protection of Genomic Data Sharing in Beacon Services.Bu, Diyue; Wang, Xiaofeng; Tang, HaixuAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888039
What's in a Note? Unpacking Predictive Value in Clinical Note Representations.Boag, Willie; Doss, Dustin; Naumann, Tristan; Szolovits, PeterAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2018;29888035
Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation.Fiddes, Ian T; Armstrong, Joel; Diekhans, Mark; Nachtweide, Stefanie; Kronenberg, Zev N; Underwood, Jason G; Gordon, David; Earl, Dent; Keane, Thomas; Eichler, Evan E; Haussler, David; Stanke, Mario; Paten, BenedictGenome research.;29884752
Multiple Testing of Submatrices of a Precision Matrix with Applications to Identification of Between Pathway Interactions.Xia, Yin; Cai, Tianxi; Cai, T TonyJournal of the American Statistical Association.;29881130
High-resolution comparative analysis of great ape genomes.Kronenberg, Zev N; Fiddes, Ian T; Gordon, David; Murali, Shwetha; Cantsilieris, Stuart; Meyerson, Olivia S; Underwood, Jason G; Nelson, Bradley J; Chaisson, Mark J P; Dougherty, Max L; Munson, Katherine M; Hastie, Alex R; Diekhans, Mark; Hormozdiari, FereScience (New York, N.Y.).;29880660
Predicting Adverse Drug Effects from Literature- and Database-Mined Assertions.La, Mary K; Sedykh, Alexander; Fourches, Denis; Muratov, Eugene; Tropsha, AlexanderDrug safety.2018 Jun 06;29876834
Data Programming: Creating Large Training Sets, Quickly.Ratner, Alexander; De Sa, Christopher; Wu, Sen; Selsam, Daniel; Ré, ChristopherAdvances in neural information processing systems.2016 Dec;29872252
Mapping macrophage polarization over the myocardial infarction time continuum.Mouton, Alan J; DeLeon-Pennell, Kristine Y; Rivera Gonzalez, Osvaldo J; Flynn, Elizabeth R; Freeman, Tom C; Saucerman, Jeffrey J; Garrett, Michael R; Ma, Yonggang; Harmancey, Romain; Lindsey, Merry LBasic research in cardiology.2018 Jun 04;29868933
Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage.Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, JaideepIEEE internet computing.2018 Mar-Apr;29867290
Acute changes in foot strike pattern and cadence affect running parameters associated with tibial stress fractures.Yong, Jennifer R; Silder, Amy; Montgomery, Kate L; Fredericson, Michael; Delp, Scott LJournal of biomechanics.2018 Jul 25;29866518
The Added Value of Diffusion-Weighted MRI-Derived Structural Connectome in Evaluating Mild Cognitive Impairment: A Multi-Cohort Validation1.Wang, Qi; Guo, Lei; Thompson, Paul M; Jack, Clifford R; Dodge, Hiroko; Zhan, Liang; Zhou, Jiayu; Alzheimer?s Disease Neuroimaging Initiative and National Alzheimer?s Coordinating CenterJournal of Alzheimer's disease : JAD.2018;29865049
Big data sharing and analysis to advance research in post-traumatic epilepsy.Duncan, Dominique; Vespa, Paul; Pitkänen, Asla; Braimah, Adebayo; Lapinlampi, Niina; Toga, Arthur WNeurobiology of disease.2018 Jun 01;29864492
Quantifying the Impact of Rare and Ultra-rare Coding Variation across the Phenotypic Spectrum.Ganna, Andrea; Satterstrom, F Kyle; Zekavat, Seyedeh M; Das, Indraniel; Kurki, Mitja I; Churchhouse, Claire; Alfoldi, Jessica; Martin, Alicia R; Havulinna, Aki S; Byrnes, Andrea; Thompson, Wesley K; Nielsen, Philip R; Karczewski, Konrad J; Saarentaus, ElmAmerican journal of human genetics.2018 Jun 07;29861106
Association between inflammation and systolic blood pressure in RA compared to patients without RA.Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine PArthritis research & therapy.2018 Jun 01;29855349
SCOTCH: Secure Counting Of encrypTed genomiC data using a Hybrid approach.Chenghong, Wang; Jiang, Yichen; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Al Aziz, Md Momin; Sadat, Md Nazmus; Wang, ShuangAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854245
A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis.Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, LucilaAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854240
Mining Hierarchies and Similarity Clusters from Value Set Repositories.Peterson, Kevin J; Jiang, Guoqian; Brue, Scott M; Shen, Feichen; Liu, HongfangAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854206
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations.Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark AAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854196
Framing Electronic Medical Records as Polylingual Documents in Query Expansion.Huang, Edward W; Wang, Sheng; Lee, Doris Jung-Lin; Zhang, Runshun; Liu, Baoyan; Zhou, Xuezhong; Zhai, ChengXiangAMIA ... Annual Symposium proceedings. AMIA Symposium.2017;29854161
Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms.Can, Anil; Rudy, Robert F; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, RoseStroke.2018 Jul;29844027
Multi-Descriptor Read Across (MuDRA): A Simple and Transparent Approach for Developing Accurate Quantitative Structure-Activity Relationship Models.Alves, Vinicius M; Golbraikh, Alexander; Capuzzi, Stephen J; Liu, Kammy; Lam, Wai In; Korn, Daniel Robert; Pozefsky, Diane; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, AlexanderJournal of chemical information and modeling.2018 06 25;29809005
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.Clarke, Daniel J B; Kuleshov, Maxim V; Schilder, Brian M; Torre, Denis; Duffy, Mary E; Keenan, Alexandra B; Lachmann, Alexander; Feldmann, Axel S; Gundersen, Gregory W; Silverstein, Moshe C; Wang, Zichen; Ma'ayan, AviNucleic acids research.2018 Jul 02;29800326
Progress Toward Cancer Data Ecosystems.Grossman, Robert LCancer journal (Sudbury, Mass.).2018 May/Jun;29794537
Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews.Cheng Ye, M S; Fabbri, DanielJournal of biomedical informatics.;29793071
A Flow Procedure for Linearization of Genome Sequence Graphs.Haussler, David; Smuga-Otto, Maciej; Eizenga, Jordan M; Paten, Benedict; Novak, Adam M; Nikitin, Sergei; Zueva, Maria; Miagkov, DmitriiJournal of computational biology : a journal of computational molecular cell biology.2018 07;29792514
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE).Lill, Jennie R; van Veelen, Peter A; Tenzer, Stefan; Admon, Arie; Caron, Etienne; Elias, Joshua E; Heck, Albert J R; Marcilla, Miguel; Marino, Fabio; Müller, Markus; Peters, Bjoern; Purcell, Anthony; Sette, Alessandro; Sturm, Theo; Ternette, Nicola; VizcaProteomics.2018 Jun;29791771
PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies.Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine PJournal of the American Medical Informatics Association : JAMIA.2018 10 01;29788308
Stressful Life Events, ADHD Symptoms, and Brain Structure in Early Adolescence.Humphreys, Kathryn L; Watts, Emily L; Dennis, Emily L; King, Lucy S; Thompson, Paul M; Gotlib, Ian HJournal of abnormal child psychology.2018 May 21;29785533
Classifying Alzheimer's disease with brain imaging and genetic data using a neural network framework.Ning, Kaida; Chen, Bo; Sun, Fengzhu; Hobel, Zachary; Zhao, Lu; Matloff, Will; Alzheimer's Disease Neuroimaging Initiative; Toga, Arthur WNeurobiology of aging.2018 Aug;29784544
Weighted SGD for ? p Regression with Randomized Preconditioning.Yang, Jiyan; Chow, Yin-Lam; Ré, Christopher; Mahoney, Michael WProceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms.2016 Jan;29782626
I'll Be Back: On the Multiple Lives of Users of a Mobile Activity Tracking Application.Lin, Zhiyuan; Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2018 Apr;29780978
Modeling Interdependent and Periodic Real-World Action Sequences.Kurashima, Takeshi; Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2018 Apr;29780977
Modeling Individual Cyclic Variation in Human Behavior.Pierson, Emma; Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2018 Apr;29780976
The Selective Labels Problem: Evaluating Algorithmic Predictions in the Presence of Unobservables.Lakkaraju, Himabindu; Kleinberg, Jon; Leskovec, Jure; Ludwig, Jens; Mullainathan, SendhilKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2017 Aug;29780658
Development of an Algorithm to Identify Patients with Physician-Documented Insomnia.Kartoun, Uri; Aggarwal, Rahul; Beam, Andrew L; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Kohane, Isaac S; Shaw, Stanley YScientific reports.2018 May 18;29777125
Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology.Bae, J Alexander; Mu, Shang; Kim, Jinseop S; Turner, Nicholas L; Tartavull, Ignacio; Kemnitz, Nico; Jordan, Chris S; Norton, Alex D; Silversmith, William M; Prentki, Rachel; Sorek, Marissa; David, Celia; Jones, Devon L; Bland, Doug; Sterling, Amy L R; Park, Jungman; Briggman, Kevin L; Seung, H Sebastian; EyewirersCell.2018 05 17;29775596
Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.Liem, David A; Murali, Sanjana; Sigdel, Dibakar; Shi, Yu; Wang, Xuan; Shen, Jiaming; Choi, Howard; Caufield, John H; Wang, Wei; Ping, Peipei; Han, JiaWeiAmerican journal of physiology. Heart and circulatory physiology.2018 Oct 01;29775406
The Mouse Heart Attack Research Tool 1.0 database.DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ma, Yonggang; Yabluchanskiy, Andriy; Zamilpa, Rogelio; Chiao, Ying Ann; Cannon, Presley L; Kaplan, Abdullah; Cates, Courtney A; Flynn, Elizabeth R; Halade, Ganesh V; de Castro Brás, Lisandra E; LindseAmerican journal of physiology. Heart and circulatory physiology.2018 Sep 01;29775405
Local Higher-Order Graph Clustering.Yin, Hao; Benson, Austin R; Leskovec, Jure; Gleich, David FKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.;29770258
Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data.Hallac, David; Vare, Sagar; Boyd, Stephen; Leskovec, JureKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.;29770257
Network Inference via the Time-Varying Graphical Lasso.Hallac, David; Park, Youngsuk; Boyd, Stephen; Leskovec, JureKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.;29770256
Snorkel: Rapid Training Data Creation with Weak Supervision.Ratner, Alexander; Bach, Stephen H; Ehrenberg, Henry; Fries, Jason; Wu, Sen; Ré, ChristopherProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.;29770249
Population-Scale Pervasive Health.Althoff, TimIEEE pervasive computing.Oct-Dec 201729770105
Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium.Kong, Xiang-Zhen; Mathias, Samuel R; Guadalupe, Tulio; ENIGMA Laterality Working Group; Glahn, David C; Franke, Barbara; Crivello, Fabrice; Tzourio-Mazoyer, Nathalie; Fisher, Simon E; Thompson, Paul M; Francks, ClydeProceedings of the National Academy of Sciences of the United States of America.;29764998
Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes.Grove, Christian; Cain, Scott; Chen, Wen J; Davis, Paul; Harris, Todd; Howe, Kevin L; Kishore, Ranjana; Lee, Raymond; Paulini, Michael; Raciti, Daniela; Tuli, Mary Ann; Van Auken, Kimberly; Williams, Gary; WormBase ConsortiumMethods in molecular biology (Clifton, N.J.).2018;29761466
ERMrest: A Collaborative Data Catalog with Fine Grain Access Control.Czajkowski, Karl; Kesselman, Carl; Schuler, RobertProceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience.2017 Oct;29756002
Experiences with Deriva: An Asset Management Platform for Accelerating eScience.Bugacov, Alejandro; Czajkowski, Karl; Kesselman, Carl; Kumar, Anoop; Schuler, Robert E; Tangmunarunkit, HongsudaProceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience.2017 Oct;29756001
Pharmacovigilance via Baseline Regularization with Large-Scale Longitudinal Observational Data.Kuang, Zhaobin; Peissig, Peggy; Costa, Vítor Santos; Maclin, Richard; Page, DavidKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2017 Aug;29755826
A Constraint Optimization Approach to Causal Discovery from Subsampled Time Series Data.Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, DavidInternational journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society.2017 Nov;29755201
HUMAN DECISIONS AND MACHINE PREDICTIONS.Kleinberg, Jon; Lakkaraju, Himabindu; Leskovec, Jure; Ludwig, Jens; Mullainathan, SendhilThe quarterly journal of economics.2018 Feb 01;29755141
Assigning matrix metalloproteinase roles in ischaemic cardiac remodelling.Lindsey, Merry LNature reviews. Cardiology.2018 May 11;29752454
Magnetic resonance spectroscopy of fiber tracts in children with traumatic brain injury: A combined MRS - Diffusion MRI study.Dennis, Emily L; Babikian, Talin; Alger, Jeffry; Rashid, Faisal; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FHuman brain mapping.2018 May 10;29749094
Diverse reprogramming codes for neuronal identity.Tsunemoto, Rachel; Lee, Sohyon; Sz?cs, Attila; Chubukov, Pavel; Sokolova, Irina; Blanchard, Joel W; Eade, Kevin T; Bruggemann, Jacob; Wu, Chunlei; Torkamani, Ali; Sanna, Pietro Paolo; Baldwin, Kristin KNature.2018 05;29743677
A Secure Alignment Algorithm for Mapping Short Reads to Human Genome.Zhao, Yongan; Wang, Xiaofeng; Tang, HaixuJournal of computational biology : a journal of computational molecular cell biology.2018 06;29741956
Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease.Gao, Chao; Sun, Hanbo; Wang, Tuo; Tang, Ming; Bohnen, Nicolaas I; Müller, Martijn L T M; Herman, Talia; Giladi, Nir; Kalinin, Alexandr; Spino, Cathie; Dauer, William; Hausdorff, Jeffrey M; Dinov, Ivo DScientific reports.2018 05 08;29740058
Uniform resolution of compact identifiers for biomedical data.Wimalaratne, Sarala M; Juty, Nick; Kunze, John; Janée, Greg; McMurry, Julie A; Beard, Niall; Jimenez, Rafael; Grethe, Jeffrey S; Hermjakob, Henning; Martone, Maryann E; Clark, TimScientific data.2018 05 08;29737976
Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization.Ponzoni, Luca; Zhang, She; Cheng, Mary Hongying; Bahar, IvetPhilosophical transactions of the Royal Society of London. Series B, Biological sciences.2018 06 19;29735731
Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.Mulugeta, Lealem; Drach, Andrew; Erdemir, Ahmet; Hunt, C A; Horner, Marc; Ku, Joy P; Myers Jr, Jerry G; Vadigepalli, Rajanikanth; Lytton, William WFrontiers in neuroinformatics.2018;29713272
Biases in electronic health record data due to processes within the healthcare system: retrospective observational study.Agniel, Denis; Kohane, Isaac S; Weber, Griffin MBMJ (Clinical research ed.).2018 04 30;29712648
Quantifying predictive capability of electronic health records for the most harmful breast cancer.Wu, Yirong; Fan, Jun; Peissig, Peggy; Berg, Richard; Tafti, Ahmad Pahlavan; Yin, Jie; Yuan, Ming; Page, David; Cox, Jennifer; Burnside, Elizabeth SProceedings of SPIE--the International Society for Optical Engineering.2018 Feb;29706685
A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models.Scientific reports.2018 Apr 26;29700343
Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine.Circulation research.2018 Apr 27;29700073
Personal Omics for Precision Health.Kellogg, Ryan A; Dunn, Jessilyn; Snyder, Michael PCirculation research.2018 04 27;29700064
Deep learning in pharmacogenomics: from gene regulation to patient stratification.Kalinin, Alexandr A; Higgins, Gerald A; Reamaroon, Narathip; Soroushmehr, Sayedmohammadreza; Allyn-Feuer, Ari; Dinov, Ivo D; Najarian, Kayvan; Athey, Brian DPharmacogenomics.2018 05;29697304
Testing associations between cannabis use and subcortical volumes in two large population-based samples.Gillespie, Nathan A; Neale, Michael C; Bates, Timothy C; Eyler, Lisa T; Fennema-Notestine, Christine; Vassileva, Jasmin; Lyons, Michael J; Prom-Wormley, Elizabeth C; McMahon, Katie L; Thompson, Paul M; de Zubicaray, Greig; Hickie, Ian B; McGrath, John J; Strike, Lachlan T; Rentería, Miguel E; Panizzon, Matthew S; Martin, Nicholas G; Franz, Carol E; Kremen, William S; Wright, Margaret JAddiction (Abingdon, England).2018 Apr 24;29691937
Micropublication: incentivizing community curation and placing unpublished data into the public domain.Raciti, Daniela; Yook, Karen; Harris, Todd W; Schedl, Tim; Sternberg, Paul WDatabase : the journal of biological databases and curation.2018 01 01;29688367
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.Vita, Randi; Overton, James A; Mungall, Christopher J; Sette, Alessandro; Peters, BjoernDatabase : the journal of biological databases and curation.2018 01 01;29688354
Multimodal Teaching Analytics: Automated Extraction of Orchestration Graphs from Wearable Sensor Data.Prieto, Luis P; Sharma, Kshitij; Kidzinski, ?ukasz; Rodríguez-Triana, María Jesús; Dillenbourg, PierreJournal of computer assisted learning.2018 Apr;29686446
SeleCon: Scalable IoT Device Selection and Control Using Hand Gestures.Alanwar, Amr; Alzantot, Moustafa; Ho, Bo-Jhang; Martin, Paul; Srivastava, ManiIoTDI 2017 : 2017 IEEE/ACM Second International Conference on Internet-of-Things Design and Implementation : proceedings : 18-20 April 2017, Pittsburgh, Pennsylvania, USA. IoTDI (Conference) (2nd : 2017 : Pittsburgh, Pa.).2017 Apr;29683151
Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation.Kim, Miran; Song, Yongsoo; Wang, Shuang; Xia, Yuhou; Jiang, XiaoqianJMIR medical informatics.2018 Apr 17;29666041
Individual differences in stop-related activity are inflated by the adaptive algorithm in the stop signal task.D'Alberto, Nicholas; Chaarani, Bader; Orr, Catherine A; Spechler, Philip A; Albaugh, Matthew D; Allgaier, Nicholas; Wonnell, Alexander; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Itterman, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Robbins, Trevor W; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, HughHuman brain mapping.2018 Apr 15;29656430
Effects of green tea on miRNA and microbiome of oral epithelium.Adami, Guy R; Tangney, Christy C; Tang, Jessica L; Zhou, Yalu; Ghaffari, Saba; Naqib, Ankur; Sinha, Saurabh; Green, Stefan J; Schwartz, Joel LScientific reports.2018 Apr 12;29651001
Whole Brain Magnetic Resonance Spectroscopic Determinants of Functional Outcomes in Pediatric Moderate/Severe Traumatic Brain Injury.Babikian, Talin; Alger, Jeffry R; Ellis-Blied, Monica U; Giza, Christopher C; Dennis, Emily; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeff; Thompson, Paul M; Asarnow, Robert FJournal of neurotrauma.2018 07 15;29649959
Massive mining of publicly available RNA-seq data from human and mouse.Lachmann, Alexander; Torre, Denis; Keenan, Alexandra B; Jagodnik, Kathleen M; Lee, Hoyjin J; Wang, Lily; Silverstein, Moshe C; Ma'ayan, AviNature communications.;29636450
SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications.Kalinin, Alexandr A; Palanimalai, Selvam; Dinov, Ivo DProceedings of the 2nd Workshop on Human-In-the-Loop Data Analytics. Workshop on Human-In-the-Loop Data Analytics (2nd : 2017 : Chicago, Ill.).2017 Apr;29630069
CIDER: Enhancing the Performance of Computational Eyeglasses.Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, DeepakProceedings. Eye Tracking Research & Applications Symposium.2016 Mar;29629433
Emu: Engagement Modeling for User Studies.Ho, Bo-Jhang; Nikzad, Nima; Balaji, Bharathan; Srivastava, ManiProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2017 Sep;29629432
RSTensorFlow: GPU Enabled TensorFlow for Deep Learning on Commodity Android Devices.Alzantot, Moustafa; Wang, Yingnan; Ren, Zhengshuang; Srivastava, Mani BMobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services.2017 Jun;29629431
Using Smart City Technology to Make Healthcare Smarter.Cook, Diane J; Duncan, Glen; Sprint, Gina; Fritz, RoschelleProceedings of the IEEE. Institute of Electrical and Electronics Engineers.2018 Apr;29628528
Computer-Aided Discovery and Characterization of Novel Ebola Virus Inhibitors.Capuzzi, Stephen J; Sun, Wei; Muratov, Eugene N; Martínez-Romero, Carles; He, Shihua; Zhu, Wenjun; Li, Hao; Tawa, Gregory; Fisher, Ethan G; Xu, Miao; Shinn, Paul; Qiu, Xiangguo; García-Sastre, Adolfo; Zheng, Wei; Tropsha, AlexanderJournal of medicinal chemistry.2018 04 26;29624387
Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture.Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, RoseStroke.2018 May;29622625
Ketamine and ketamine metabolites as novel estrogen receptor ligands: Induction of cytochrome P450 and AMPA glutamate receptor gene expression.Ho, Ming-Fen; Correia, Cristina; Ingle, James N; Kaddurah-Daouk, Rima; Wang, Liewei; Kaufmann, Scott H; Weinshilboum, Richard MBiochemical pharmacology.2018 Jun;29621538
Content Is King: Databases Preserve the Collective Information of Science.Yates 3rd, John RJournal of biomolecular techniques : JBT.2018 Apr;29618955
Cell-centred meta-analysis reveals baseline predictors of anti-TNF? non-response in biopsy and blood of patients with IBD.Gaujoux, Renaud; Starosvetsky, Elina; Maimon, Naama; Vallania, Francesco; Bar-Yoseph, Haggai; Pressman, Sigal; Weisshof, Roni; Goren, Idan; Rabinowitz, Keren; Waterman, Matti; Yanai, Henit; Dotan, Iris; Sabo, Edmond; Chowers, Yehuda; Khatri, Purvesh; Shen-Orr, Shai S; Israeli IBD research Network (IIRN)Gut.2019 04;29618496
Magnetic resonance imaging does not reveal structural alterations in the brain of grapheme-color synesthetes.Dojat, Michel; Pizzagalli, Fabrizio; Hupé, Jean-MichelPloS one.2018;29617401
Presurgical localization and spatial shift of resting state networks in patients with brain metastases.Ding, Ju-Rong; Zhu, Fangmei; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Thompson, Paul MBrain imaging and behavior.2018 Apr 02;29611075
Structural dynamics is a determinant of the functional significance of missense variants.Ponzoni, Luca; Bahar, IvetProceedings of the National Academy of Sciences of the United States of America.2018 Apr 17;29610305
Implementing Wearable Sensors for Continuous Assessment of Daytime Heart Rate Response in Inpatient Rehabilitation.Weeks, Douglas L; Sprint, Gina L; Stilwill, Virgeen; Meisen-Vehrs, Amy Lou; Cook, Diane JTelemedicine journal and e-health : the official journal of the American Telemedicine Association.2018 Apr 02;29608421
Binary Classifier Calibration Using an Ensemble of Piecewise Linear Regression Models.Naeini, Mahdi Pakdaman; Cooper, Gregory FKnowledge and information systems.2018 Jan;29606784
Physical activity is associated with changes in knee cartilage microstructure.Halilaj, E; Hastie, T J; Gold, G E; Delp, S LOsteoarthritis and cartilage.2018 Jun;29605382
Optimizing Digital Integrated Care via Micro-Randomized Trials.Walton, Ashley; Nahum-Shani, Inbal; Crosby, Lori; Klasnja, Predrag; Murphy, SusanClinical pharmacology and therapeutics.2018 Mar 31;29604043
SnapVX: A Network-Based Convex Optimization Solver.Hallac, David; Wong, Christopher; Diamond, Steven; Sharang, Abhijit; Sosi?, Rok; Boyd, Stephen; Leskovec, JureJournal of machine learning research : JMLR.2017;29599649
Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines.Ellrott, Kyle; Bailey, Matthew H; Saksena, Gordon; Covington, Kyle R; Kandoth, Cyriac; Stewart, Chip; Hess, Julian; Ma, Singer; Chiotti, Kami E; McLellan, Michael; Sofia, Heidi J; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li; MC3 Working Group; Cancer Genome Atlas Research NetworkCell systems.2018 Mar 28;29596782
Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression.Wilson, Ander; Zigler, Corwin M; Patel, Chirag J; Dominici, FrancescaBiometrics.2018 09;29569228
Genetic Drivers of Pancreatic Islet Function.Keller, Mark P; Gatti, Daniel M; Schueler, Kathryn L; Rabaglia, Mary E; Stapleton, Donnie S; Simecek, Petr; Vincent, Matthew; Allen, Sadie; Broman, Aimee Teo; Bacher, Rhonda; Kendziorski, Christina; Broman, Karl W; Yandell, Brian S; Churchill, Gary A; AttGenetics.2018 05;29567659
Interaction between striatal volume and DAT1 polymorphism predicts working memory development during adolescence.Nemmi, F; Nymberg, C; Darki, F; Banaschewski, T; Bokde, A L W; Büchel, C; Flor, H; Frouin, V; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Nees, F; Paus, T; Smolka, M N; Robbins, T W; Schumann, G; Klingberg, T; IMAGEN consortiumDevelopmental cognitive neuroscience.2018 04;29567584
Biomedical informatics and machine learning for clinical genomics.Diao, James A; Kohane, Isaac S; Manrai, Arjun KHuman molecular genetics.2018 May 01;29566172
QSAR-Driven Design and Discovery of Novel Compounds With Antiplasmodial and Transmission Blocking Activities.Lima, Marilia N N; Melo-Filho, Cleber C; Cassiano, Gustavo C; Neves, Bruno J; Alves, Vinicius M; Braga, Rodolpho C; Cravo, Pedro V L; Muratov, Eugene N; Calit, Juliana; Bargieri, Daniel Y; Costa, Fabio T M; Andrade, Carolina HFrontiers in pharmacology.2018;29559909
PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets.Martínez-Bartolomé, Salvador; Medina-Aunon, J Alberto; López-García, Miguel Ángel; González-Tejedo, Carmen; Prieto, Gorka; Navajas, Rosana; Salazar-Donate, Emilio; Fernández-Costa, Carolina; Yates 3rd, John R; Albar, Juan PabloJournal of proteome research.2018 04 06;29558135
Extending the Construct Network of Trait Disinhibition to the Neuroimaging Domain: Validation of a Bridging Scale for Use in the European IMAGEN Project.Brislin, Sarah J; Patrick, Christopher J; Flor, Herta; Nees, Frauke; Heinrich, Angela; Drislane, Laura E; Yancey, James R; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; van Noort, Betteke; Grimmer, Yvonne; Fadai, Tahmine; Schumann, Gunter; Foell, JensAssessment.2019 06;29557190
Linear assembly of a human centromere on the Y chromosome.Jain, Miten; Olsen, Hugh E; Turner, Daniel J; Stoddart, David; Bulazel, Kira V; Paten, Benedict; Haussler, David; Willard, Huntington F; Akeson, Mark; Miga, Karen HNature biotechnology.2018 Mar 19;29553574
Predicting Daily Activities From Egocentric Images Using Deep Learning.Castro, Daniel; Hickson, Steven; Bettadapura, Vinay; Thomaz, Edison; Abowd, Gregory; Christensen, Henrik; Essa, IrfanProceedings. International Symposium on Wearable Computers.2015 Aug;29553145
Developing Optimized Adaptive Interventions in Education.Almirall, Daniel; Kasari, Connie; McCaffrey, Daniel F; Nahum-Shani, InbalJournal of research on educational effectiveness.2018;29552270
Emotional Processing in Obsessive-Compulsive Disorder: A Systematic Review and Meta-analysis of 25 Functional Neuroimaging Studies.Thorsen, Anders Lillevik; Hagland, Pernille; Radua, Joaquim; Mataix-Cols, David; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile ABiological psychiatry. Cognitive neuroscience and neuroimaging.2018 Feb 03;29550459
Adding Reg3? to the acute coronary syndrome prognostic marker list.Lindsey, Merry L; Mouton, Alan J; Ma, YonggangInternational journal of cardiology.2018 05 01;29544938
Anytime Exploration for Multi-armed Bandits using Confidence Information.Jun, Kwang-Sung; Nowak, RobertJMLR workshop and conference proceedings.2016 Jun;29541329
Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters.Sweeney, Timothy E; Azad, Tej D; Donato, Michele; Haynes, Winston A; Perumal, Thanneer M; Henao, Ricardo; Bermejo-Martin, Jesús F; Almansa, Raquel; Tamayo, Eduardo; Howrylak, Judith A; Choi, Augustine; Parnell, Grant P; Tang, Benjamin; Nichols, Marshall; Woods, Christopher W; Ginsburg, Geoffrey S; Kingsmore, Stephen F; Omberg, Larsson; Mangravite, Lara M; Wong, Hector R; Tsalik, Ephraim L; Langley, Raymond J; Khatri, PurveshCritical care medicine.2018 Mar 13;29537985
A Practical Approach for Recognizing Eating Moments with Wrist-Mounted Inertial Sensing.Thomaz, Edison; Essa, Irfan; Abowd, Gregory DProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2015 Sep;29520397
Discovery of Causal Models that Contain Latent Variables through Bayesian Scoring of Independence Constraints.Jabbari, Fattaneh; Ramsey, Joseph; Spirtes, Peter; Cooper, GregoryMachine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference).2017 Sep;29520396
Chronodes: Interactive Multifocus Exploration of Event Sequences.Polack JR., Peter J; Chen, Shang-Tse; Kahng, Minsuk; DE Barbaro, Kaya; Basole, Rahul; Sharmin, Moushumi; Chau, Duen HorngACM transactions on interactive intelligent systems.2018 Feb;29515937
RNA expression profiling in sulfamethoxazole-treated patients with a range of in vitro lymphocyte cytotoxicity phenotypes.Reinhart, Jennifer M; Rose, Warren; Panyard, Daniel J; Newton, Michael A; Liebenstein, Tyler K; Yee, Jeremiah; Trepanier, Lauren APharmacology research & perspectives.2018 04;29511567
Susceptibility of brain atrophy toTRIB3in Alzheimer's disease, evidence from functional prioritization in imaging genetics.Lorenzi, Marco; Altmann, Andre; Gutman, Boris; Wray, Selina; Arber, Charles; Hibar, Derrek P; Jahanshad, Neda; Schott, Jonathan M; Alexander, Daniel C; Thompson, Paul M; Ourselin, Sebastien; Alzheimer?s Disease Neuroimaging InitiativeProceedings of the National Academy of Sciences of the United States of America.2018 Mar 20;29511103
Some methods for heterogeneous treatment effect estimation in high dimensions.Powers, Scott; Qian, Junyang; Jung, Kenneth; Schuler, Alejandro; Shah, Nigam H; Hastie, Trevor; Tibshirani, RobertStatistics in medicine.2018 May 20;29508417
Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation.Sadat, Md Nazmus; Jiang, Xiaoqian; Aziz, Md Momin Al; Wang, Shuang; Mohammed, NomanJMIR medical informatics.2018 Mar 05;29506966
Exploring Symmetric and Asymmetric Bimanual Eating Detection with Inertial Sensors on the Wrist.Thomaz, Edison; Bedri, Abdelkareem; Prioleau, Temiloluwa; Essa, Irfan; Abowd, Gregory DDigitalBiomarkers'17 : proceedings of the 1st Workshop on Digital Biomarkers : June 23, 2017, Niagara Falls, NY, USA. Workshop on Digital Biomarkers (1st : 2017 : Niagara Falls, N.Y.).2017 Jul;29505038
SARA: A Mobile App to Engage Users in Health Data Collection.Rabbi, Mashfiqui; Philyaw-Kotov, Meredith; Lee, Jinseok; Mansour, Anthony; Dent, Laura; Wang, Xiaolei; Cunningham, Rebecca; Bonar, Erin; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, SusanProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2017 Sep;29503985
From Pressure to Path: Barometer-based Vehicle Tracking.Ho, Bo-Jhang; Martin, Paul; Swaminathan, Prashanth; Srivastava, ManiBuildSys'15 : proceedings of the 2nd ACM International Conference on Embedded Systems for Energy-Efficient Buildings : November 4-5, 2015, Seoul, South Korea. ACM Conference on Embedded Systems for Energy-Efficient Buildings (2nd : 2015....2015 Nov;29503981
Survival models and health sequences.Dempsey, Walter; McCullagh, PeterLifetime data analysis.2018 Mar 03;29502184
Neuroimaging of the Injured Pediatric Brain: Methods and New Lessons.Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FThe Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.;29488436
Exploring applications of crowdsourcing to cryo-EM.Bruggemann, Jacob; Lander, Gabriel C; Su, Andrew IJournal of structural biology.2018 Jul;29486249
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses.Torre, Denis; Krawczuk, Patrycja; Jagodnik, Kathleen M; Lachmann, Alexander; Wang, Zichen; Wang, Lily; Kuleshov, Maxim V; Ma'ayan, AviScientific data.2018 Feb 27;29485625
Comment.Reiss, Philip T; Goldsmith, JeffJournal of the American Statistical Association.2017;29479124
Assessing the Practice of Biomedical Ontology Evaluation: Gaps and Opportunities.Amith, Muhammad F; He, Zhe; Bian, Jiang; Antonio Lossio-Ventura, Juan; Tao, CuiJournal of biomedical informatics.2018 Feb 17;29462669
Superbubbles, Ultrabubbles, and Cacti.Paten, Benedict; Eizenga, Jordan M; Rosen, Yohei M; Novak, Adam M; Garrison, Erik; Hickey, GlennJournal of computational biology : a journal of computational molecular cell biology.2018 Feb 20;29461862
Learning Activity Predictors from Sensor Data: Algorithms, Evaluation, and Applications.Minor, Bryan; Doppa, Janardhan Rao; Cook, Diane JIEEE transactions on knowledge and data engineering.2017 Dec 01;29456436
A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.Toor, Jugmohit S; Rao, Arjun A; McShan, Andrew C; Yarmarkovich, Mark; Nerli, Santrupti; Yamaguchi, Karissa; Madejska, Ada A; Nguyen, Son; Tripathi, Sarvind; Maris, John M; Salama, Sofie R; Haussler, David; Sgourakis, Nikolaos GFrontiers in immunology.2018;29441070
Quantitative high-throughput phenotypic screening of pediatric cancer cell lines identifies multiple opportunities for drug repurposing.Shen, Min; Asawa, Rosita; Zhang, Ya-Qin; Cunningham, Elizabeth; Sun, Hongmao; Tropsha, Alexander; Janzen, William P; Muratov, Eugene N; Capuzzi, Stephen J; Farag, Sherif; Jadhav, Ajit; Blatt, Julie; Simeonov, Anton; Martinez, Natalia JOncotarget.2018 Jan 12;29435139
Nanopore sequencing and assembly of a human genome with ultra-long reads.Jain, Miten; Koren, Sergey; Miga, Karen H; Quick, Josh; Rand, Arthur C; Sasani, Thomas A; Tyson, John R; Beggs, Andrew D; Dilthey, Alexander T; Fiddes, Ian T; Malla, Sunir; Marriott, Hannah; Nieto, Tom; O'Grady, Justin; Olsen, Hugh E; Pedersen, Brent S; Rhie, Arang; Richardson, Hollian; Quinlan, Aaron R; Snutch, Terrance P; Tee, Louise; Paten, Benedict; Phillippy, Adam M; Simpson, Jared T; Loman, Nicholas J; Loose, MatthewNature biotechnology.2018 Jan 29;29431738
Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging.Kim, Hyunwoo J; Adluru, Nagesh; Suri, Heemanshu; Vemuri, Baba C; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2017 Jul;29430166
Systematic identification of correlates of HIV infection: an X-wide association study.Patel, Chirag J; Bhattacharya, Jay; Ioannidis, John P A; Bendavid, EranAIDS (London, England).2018 04 24;29424772
Integrated Theory- and Data-driven Feature Selection in Gene Expression Data Analysis.Raghu, Vineet K; Ge, Xiaoyu; Chrysanthis, Panos K; Benos, Panayiotis VProceedings. International Conference on Data Engineering.2017 Apr;29422764
iLid: Low-power Sensing of Fatigue and Drowsiness Measures on a Computational Eyeglass.Rostaminia, Soha; Mayberry, Addison; Ganesan, Deepak; Marlin, Benjamin; Gummeson, JeremyProceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies.2017 Jun;29417956
Online Graph Completion: Multivariate Signal Recovery in Computer Vision.Kim, Won Hwa; Jalal, Mona; Hwang, Seongjae; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2017 Jul;29416294
The Incremental Multiresolution Matrix Factorization Algorithm.Ithapu, Vamsi K; Kondor, Risi; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2017 Jul;29416293
Neuroanatomical morphometric characterization of sex differences in youth using statistical learning.Sepehrband, Farshid; Lynch, Kirsten M; Cabeen, Ryan P; Gonzalez-Zacarias, Clio; Zhao, Lu; D'Arcy, Mike; Kesselman, Carl; Herting, Megan M; Dinov, Ivo D; Toga, Arthur W; Clark, Kristi ANeuroImage.2018 May 15;29414494
The Influence of Study-Level Inference Models and Study Set Size on Coordinate-Based fMRI Meta-Analyses.Bossier, Han; Seurinck, Ruth; Kühn, Simone; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Martinot, Jean-Luc; Lemaitre, Herve; Paus, Tomá?; Millenet, Sabina; Moerkerke, BeatrijsFrontiers in neuroscience.2017;29403344
Anyone Can Become a Troll: Causes of Trolling Behavior in Online Discussions.Cheng, Justin; Bernstein, Michael; Danescu-Niculescu-Mizil, Cristian; Leskovec, JureCSCW : proceedings of the Conference on Computer-Supported Cooperative Work. Conference on Computer-Supported Cooperative Work.2017 Feb-Mar;29399664
Gaussian Quadrature for Kernel Features.Dao, Tri; De Sa, Christopher; Ré, ChristopherAdvances in neural information processing systems.2017 Dec;29398882
Understanding and Optimizing Asynchronous Low-Precision Stochastic Gradient Descent.De Sa, Christopher; Feldman, Matthew; Ré, Christopher; Olukotun, KunleProceedings. International Symposium on Computer Architecture.2017 Jun;29391770
Inferring Generative Model Structure with Static Analysis.Varma, Paroma; He, Bryan; Bajaj, Payal; Banerjee, Imon; Khandwala, Nishith; Rubin, Daniel L; Ré, ChristopherAdvances in neural information processing systems.2017 Dec;29391769
Benefits of and Barriers to Pharmacogenomics-Guided Treatment for Major Depressive Disorder.Ahmed, Ahmed T; Weinshilboum, Richard; Frye, Mark AClinical pharmacology and therapeutics.2018 May;29388201
Two-Sample Tests for High-Dimensional Linear Regression with an Application to Detecting Interactions.Xia, Yin; Cai, Tianxi; Cai, T TonyStatistica Sinica.2018 Jan;29386856
Statistical tests and identifiability conditions for pooling and analyzing multisite datasets.Zhou, Hao Henry; Singh, Vikas; Johnson, Sterling C; Wahba, Grace; Alzheimer?s Disease Neuroimaging InitiativeProceedings of the National Academy of Sciences of the United States of America.2018 Feb 13;29386387
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.Menschaert, Gerben; Wang, Xiaojing; Jones, Andrew R; Ghali, Fawaz; Fenyö, David; Olexiouk, Volodimir; Zhang, Bing; Deutsch, Eric W; Ternent, Tobias; Vizcaíno, Juan AntonioGenome biology.2018 01 31;29386051
Interleukins and their signaling pathways in the Reactome biological pathway database.Jupe, Steve; Ray, Keith; Roca, Corina Duenas; Varusai, Thawfeek; Shamovsky, Veronica; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, HenningThe Journal of allergy and clinical immunology.2018 Apr;29378288
Hippo Cascade Controls Lineage Commitment of Liver Tumors in Mice and Humans.Zhang, Shanshan; Wang, Jingxiao; Wang, Haichuan; Fan, Lingling; Fan, Biao; Zeng, Billy; Tao, Junyan; Li, Xiaolei; Che, Li; Cigliano, Antonio; Ribback, Silvia; Dombrowski, Frank; Chen, Bin; Cong, Wenming; Wei, Lixin; Calvisi, Diego F; Chen, XinThe American journal of pathology.2018 04;29378174
Reactome graph database: Efficient access to complex pathway data.Fabregat, Antonio; Korninger, Florian; Viteri, Guilherme; Sidiropoulos, Konstantinos; Marin-Garcia, Pablo; Ping, Peipei; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, HenningPLoS computational biology.2018 01;29377902
Cortical Abnormalities Associated With Pediatric and Adult Obsessive-Compulsive Disorder: Findings From the ENIGMA Obsessive-Compulsive Disorder Working Group.Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Calvo, RosaThe American journal of psychiatry.2018 05 01;29377733
Cognitive genomics: Searching for the genetic roots of neuropsychological functioning.Bearden, Carrie E; Glahn, David CNeuropsychology.2017 Nov;29376674
Using Collaborative Simulation Modeling to Develop a Web-Based Tool to Support Policy-Level Decision Making About Breast Cancer Screening Initiation Age.Burnside, Elizabeth S; Lee, Sandra J; Bennette, Carrie; Near, Aimee M; Alagoz, Oguzhan; Huang, Hui; van den Broek, Jeroen J; Kim, Joo Yeon; Ergun, Mehmet A; van Ravesteyn, Nicolien T; Stout, Natasha K; de Koning, Harry J; Mandelblatt, Jeanne SMDM policy & practice.2017 Jul;29376135
Learning to Compose Domain-Specific Transformations for Data Augmentation.Ratner, Alexander J; Ehrenberg, Henry R; Hussain, Zeshan; Dunnmon, Jared; Ré, ChristopherAdvances in neural information processing systems.2017 Dec;29375240
Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 1: From Methodology to Clinical Implementation.Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, RasuJournal of the American College of Radiology : JACR.2018 03;29366600
Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 2: From Clinical Implementation to Enterprise.Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, RasuJournal of the American College of Radiology : JACR.2018 03;29366598
Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study.Whelan, Christopher D; Altmann, Andre; Botía, Juan A; Jahanshad, Neda; Hibar, Derrek P; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bartolini, Emanuele; Bergo, Felipe P G; Bernardes, Tauana; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carr, Sarah J; Chen, Jian; Chen, Shuai; Cherubini, Andrea; David, Philippe; Domin, Martin; Foley, Sonya; França, Wendy; Haaker, Gerrit; Isaev, Dmitry; Keller, Simon S; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Langner, Soenke; Lenge, Matteo; Leyden, Kelly M; Liu, Min; Loi, Richard Q; Martin, Pascal; Mascalchi, Mario; Morita, Marcia E; Pariente, Jose C; Rodríguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Yao, Yi; Yasuda, Clarissa L; Zhang, Guohao; Bargalló, Nuria; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris C; Blümcke, Ingmar; Carlson, Chad; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Focke, Niels K; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Kälviäinen, Reetta; Kochunov, Peter; Kwan, Patrick; Labate, Angelo; McDonald, Carrie R; Meletti, Stefano; O'Brien, Terence J; Ourselin, Sebastien; Richardson, Mark P; Striano, Pasquale; Thesen, Thomas; Wiest, Roland; Zhang, Junsong; Vezzani, Annamaria; Ryten, Mina; Thompson, Paul M; Sisodiya, Sanjay MBrain : a journal of neurology.2018 Feb 01;29365066
e wrapper: Operationalizing engagement strategies in mHealth.Wagner 3rd, Blake; Liu, Elaine; Shaw, Steven D; Iakovlev, Gleb; Zhou, Linlu; Harrington, Christina; Abowd, Gregory; Yoon, Carolyn; Kumar, Santosh; Murphy, Susan; Spring, Bonnie; Nahum-Shani, InbalProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2017 Sep;29362728
Co-activation patterns in resting-state fMRI signals.Liu, Xiao; Zhang, Nanyin; Chang, Catie; Duyn, Jeff HNeuroImage.2018 10 15;29355767
mHealth Visual Discovery Dashboard.Fang, Dezhi; Hohman, Fred; Polack, Peter; Sarker, Hillol; Kahng, Minsuk; Sharmin, Moushumi; al'Absi, Mustafa; Chau, Duen HorngProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2017 Sep;29354812
ShapeShop: Towards Understanding Deep Learning Representations via Interactive Experimentation.Hohman, Fred; Hodas, Nathan; Chau, Duen HorngExtended abstracts on Human factors in computing systems. CHI Conference.2017 May;29354810
Lingual Gyrus Surface Area Is Associated with Anxiety-Depression Severity in Young Adults: A Genetic Clustering Approach.Couvy-Duchesne, Baptiste; Strike, Lachlan T; de Zubicaray, Greig I; McMahon, Katie L; Thompson, Paul M; Hickie, Ian B; Martin, Nicholas G; Wright, Margaret JeNeuro.2018 Jan-Feb;29354681
Loyalty in Online Communities.Hamilton, William L; Zhang, Justine; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, JureProceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media.2017 May;29354326
Community Identity and User Engagement in a Multi-Community Landscape.Zhang, Justine; Hamilton, William L; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, JureProceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media.2017 May;29354325
Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer-associated genetic variant rs4415084.Zhang, Yi; Manjunath, Mohith; Zhang, Shilu; Chasman, Deborah; Roy, Sushmita; Song, Jun SCancer research.2018 Jan 19;29351903
Are minor alleles more likely to be risk alleles?Kido, Takashi; Sikora-Wohlfeld, Weronika; Kawashima, Minae; Kikuchi, Shinichi; Kamatani, Naoyuki; Patwardhan, Anil; Chen, Richard; Sirota, Marina; Kodama, Keiichi; Hadley, Dexter; Butte, Atul JBMC medical genomics.2018 01 19;29351777
Guidelines for authors and reviewers on antibody use in physiology studies.Brooks, Heddwen L; Lindsey, Merry LAmerican journal of physiology. Heart and circulatory physiology.2018 Apr 01;29351459
Guidelines for measuring cardiac physiology in mice.Lindsey, Merry L; Kassiri, Zamaneh; Virag, Jitka A I; de Castro Brás, Lisandra E; Scherrer-Crosbie, MarielleAmerican journal of physiology. Heart and circulatory physiology.2018 Apr 01;29351456
Guidelines for experimental models of myocardial ischemia and infarction.Lindsey, Merry L; Bolli, Roberto; Canty Jr, John M; Du, Xiao-Jun; Frangogiannis, Nikolaos G; Frantz, Stefan; Gourdie, Robert G; Holmes, Jeffrey W; Jones, Steven P; Kloner, Robert A; Lefer, David J; Liao, Ronglih; Murphy, Elizabeth; Ping, Peipei; PrzyklenkAmerican journal of physiology. Heart and circulatory physiology.2018 Apr 01;29351451
MIRO: guidelines for minimum information for the reporting of an ontology.Matentzoglu, Nicolas; Malone, James; Mungall, Chris; Stevens, RobertJournal of biomedical semantics.2018 Jan 18;29347969
Robust Dynamic Risk Prediction with Longitudinal Studies.Zhou, Qian M; Dai, Wei; Zheng, Yingye; Cai, TianxiStatistical theory and related fields.2017;29335682
Learning Tree-Structured Detection Cascades for Heterogeneous Networks of Embedded Devices.Dadkhahi, Hamid; Marlin, Benjamin MKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2017 Aug;29333328
A bibliometric review of drug repurposing.Baker, Nancy C; Ekins, Sean; Williams, Antony J; Tropsha, AlexanderDrug discovery today.2018 Mar;29330123
Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis WProteomics.2018 Feb;29319931
Standardized Effect Sizes for Preventive Mobile Health Interventions in Micro-randomized Trials.Luers, Brook; Klasnja, Predrag; Murphy, SusanPrevention science : the official journal of the Society for Prevention Research.2018 Jan 09;29318443
A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth.Rappoport, Nadav; Toung, Jonathan; Hadley, Dexter; Wong, Ronald J; Fujioka, Kazumichi; Reuter, Jason; Abbott, Charles W; Oh, Sam; Hu, Donglei; Eng, Celeste; Huntsman, Scott; Bodian, Dale L; Niederhuber, John E; Hong, Xiumei; Zhang, Ge; Sikora-Wohfeld, Weronika; Gignoux, Christopher R; Wang, Hui; Oehlert, John; Jelliffe-Pawlowski, Laura L; Gould, Jeffrey B; Darmstadt, Gary L; Wang, Xiaobin; Bustamante, Carlos D; Snyder, Michael P; Ziv, Elad; Patsopoulos, Nikolaos A; Muglia, Louis J; Burchard, Esteban; Shaw, Gary M; O'Brodovich, Hugh M; Stevenson, David K; Butte, Atul J; Sirota, MarinaScientific reports.2018 01 09;29317701
Integrated omics dissection of proteome dynamics during cardiac remodeling.Lau, Edward; Cao, Quan; Lam, Maggie P Y; Wang, Jie; Ng, Dominic C M; Bleakley, Brian J; Lee, Jessica M; Liem, David A; Wang, Ding; Hermjakob, Henning; Ping, PeipeiNature communications.;29317621
Gut microbiome populations are associated with structure-specific changes in white matter architecture.Ong, Irene M; Gonzalez, Jose G; McIlwain, Sean J; Sawin, Emily A; Schoen, Andrew J; Adluru, Nagesh; Alexander, Andrew L; Yu, John-Paul JTranslational psychiatry.2018 Jan 10;29317592
Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide.Marshall, Iain J; Noel-Storr, Anna; Kuiper, Joël; Thomas, James; Wallace, Byron CResearch synthesis methods.;29314757
Interactive Exploration on Large Genomic Datasets.Tu, EricEECS technical report series.;29308454
Hypothesis Testing in Unsupervised Domain Adaptation with Applications in Alzheimer's Disease.Zhou, Hao Henry; Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, VikasAdvances in neural information processing systems.2016;29308004
Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function.Sallam, Tamer; Sandhu, Jaspreet; Tontonoz, PeterCirculation research.2018 Jan 05;29301847
Chemotext: A Publicly Available Web Server for Mining Drug-Target-Disease Relationships in PubMed.Capuzzi, Stephen J; Thornton, Thomas E; Liu, Kammy; Baker, Nancy; Lam, Wai In; O'Banion, Colin P; Muratov, Eugene N; Pozefsky, Diane; Tropsha, AlexanderJournal of chemical information and modeling.;29300482
Linking temporal medical records using non-protected health information data.Bonomi, Luca; Jiang, XiaoqianStatistical methods in medical research.2017 Jan 01;29298592
Building Interoperable FHIR-Based Vocabulary Mapping Services: A Case Study of OHDSI Vocabularies and Mappings.Jiang, Guoqian; Kiefer, Richard; Prud'hommeaux, Eric; Solbrig, Harold RStudies in health technology and informatics.2017;29295408
A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR.Jiang, Guoqian; Kiefer, Richard C; Sharma, Deepak K; Prud'hommeaux, Eric; Solbrig, Harold RStudies in health technology and informatics.2017;29295227
Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications.Hong, Na; Prodduturi, Naresh; Wang, Chen; Jiang, GuoqianStudies in health technology and informatics.2017;29295223
Expressing Biomedical Ontologies in Natural Language for Expert Evaluation.Amith, Muhammad; Manion, Frank J; Harris, Marcelline R; Zhang, Yaoyun; Xu, Hua; Tao, CuiStudies in health technology and informatics.2017;29295217
Investigating the differential contributions of sex and brain size to gray matter asymmetry.Kurth, Florian; Thompson, Paul M; Luders, EileenCortex; a journal devoted to the study of the nervous system and behavior.2018 Feb;29287244
Proteomic analysis of the cardiac extracellular matrix: clinical research applications.Lindsey, Merry L; Jung, Mira; Hall, Michael E; DeLeon-Pennell, Kristine YExpert review of proteomics.2018 Feb;29285949
Neural response to working memory demand predicts neurocognitive deficits in HIV.Cohen, Ronald A; Siegel, S; Gullett, J M; Porges, E; Woods, A J; Huang, H; Zhu, Y; Tashima, K; Ding, M-ZJournal of neurovirology.2018 Jun;29280107
Center of Excellence for Mobile Sensor Data-to-Knowledge (MD2K).Kumar, Santosh; Abowd, Gregory; Abraham, William T; al'Absi, Mustafa; Chau, Duen Horng Polo; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Hnat, Timothy; Hossain, Syed Monowar; Ives, Zachary; Kerr, Jacqueline; Marlin, Benjamin M; Murphy, Susan; Rehg, James M; Nahum-Shani, Inbal; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, DaveIEEE pervasive computing.2017 Apr-Jun;29276451
Neural circuitry underlying sustained attention in healthy adolescents and in ADHD symptomatology.O'Halloran, Laura; Cao, Zhipeng; Ruddy, Kathy; Jollans, Lee; Albaugh, Matthew D; Aleni, Andrea; Potter, Alexandra S; Vahey, Nigel; Banaschewski, Tobias; Hohmann, Sarah; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Kelly, Clare; Whelan, RobertNeuroImage.2018 04 01;29274748
MinION-based long-read sequencing and assembly extends theCaenorhabditis elegansreference genome.Tyson, John R; O'Neil, Nigel J; Jain, Miten; Olsen, Hugh E; Hieter, Philip; Snutch, Terrance PGenome research.2018 Feb;29273626
SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis.Magis, Andrew T; Funk, Cory C; Price, Nathan DIEEE life sciences letters.2015 Aug;29270443
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API.Gutiérrez-Sacristán, Alba; Guedj, Romain; Korodi, Gabor; Stedman, Jason; Furlong, Laura I; Patel, Chirag J; Kohane, Isaac S; Avillach, PaulBioinformatics (Oxford, England).2017 Dec 18;29267850
A community effort to protect genomic data sharing, collaboration and outsourcing.Wang, Shuang; Jiang, Xiaoqian; Tang, Haixu; Wang, Xiaofeng; Bu, Diyue; Carey, Knox; Dyke, Stephanie Om; Fox, Dov; Jiang, Chao; Lauter, Kristin; Malin, Bradley; Sofia, Heidi; Telenti, Amalio; Wang, Lei; Wang, Wenhao; Ohno-Machado, LucilaNPJ genomic medicine.2017;29263842
Deep Learning based Classification of FDG-PET Data for Alzheimers Disease Categories.Singh, Shibani; Srivastava, Anant; Mi, Liang; Caselli, Richard J; Chen, Kewei; Goradia, Dhruman; Reiman, Eric M; Wang, YalinProceedings of SPIE--the International Society for Optical Engineering.2017 Oct;29263566
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.Glusman, Gustavo; Rose, Peter W; Prli?, Andreas; Dougherty, Jennifer; Duarte, José M; Hoffman, Andrew S; Barton, Geoffrey J; Bendixen, Emøke; Bergquist, Timothy; Bock, Christian; Brunk, Elizabeth; Buljan, Marija; Burley, Stephen K; Cai, Binghuang; Carter, Hannah; Gao, JianJiong; Godzik, Adam; Heuer, Michael; Hicks, Michael; Hrabe, Thomas; Karchin, Rachel; Leman, Julia Koehler; Lane, Lydie; Masica, David L; Mooney, Sean D; Moult, John; Omenn, Gilbert S; Pearl, Frances; Pejaver, Vikas; Reynolds, Sheila M; Rokem, Ariel; Schwede, Torsten; Song, Sicheng; Tilgner, Hagen; Valasatava, Yana; Zhang, Yang; Deutsch, Eric WGenome medicine.2017 Dec 18;29254494
Complete hazard ranking to analyze right-censored data: An ALS survival study.Huang, Zhengnan; Zhang, Hongjiu; Boss, Jonathan; Goutman, Stephen A; Mukherjee, Bhramar; Dinov, Ivo D; Guan, Yuanfang; Pooled Resource Open-Access ALS Clinical Trials ConsortiumPLoS computational biology.;29253881
Understanding cardiac extracellular matrix remodeling to develop biomarkers of myocardial infarction outcomes.Nielsen, Signe Holm; Mouton, Alan J; DeLeon-Pennell, Kristine Y; Genovese, Federica; Karsdal, Morten; Lindsey, Merry LMatrix biology : journal of the International Society for Matrix Biology.;29247693
Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research.Erdemir, Ahmet; Hunter, Peter J; Holzapfel, Gerhard A; Loew, Leslie M; Middleton, John; Jacobs, Christopher R; Nithiarasu, Perumal; Löhner, Rainlad; Wei, Guowei; Winkelstein, Beth A; Barocas, Victor H; Guilak, Farshid; Ku, Joy P; Hicks, Jennifer L; Delp, Scott L; Sacks, Michael; Weiss, Jeffrey A; Ateshian, Gerard A; Maas, Steve A; McCulloch, Andrew D; Peng, Grace C YJournal of biomechanical engineering.2018 Feb 01;29247253
Data-Driven Mammography Screening Practices-Reply.Lee, Cindy S; Sickles, Edward A; Burnside, Elizabeth SJAMA oncology.2017 Dec 14;29242927
Embedding Learning with Events in Heterogeneous Information Networks.Gui, Huan; Liu, Jialu; Tao, Fangbo; Jiang, Meng; Norick, Brandon; Kaplan, Lance; Han, JiaweiIEEE transactions on knowledge and data engineering.2017 Nov;29242698
Finding Pure Sub-Models for Improved Differentiation of Bi-Factor and Second-Order Models.Yang, Renjie; Spirtes, Peter; Scheines, Richard; Reise, Steven P; Mansoff, MaxwellStructural equation modeling : a multidisciplinary journal.2017;29230085
An Optimal Transportation based Univariate Neuroimaging Index.Mi, Liang; Zhang, Wen; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Reiman, Eric M; Gu, Xianfeng; Wang, YalinProceedings. IEEE International Conference on Computer Vision.2017;29225556
Action Centered Contextual Bandits.Greenewald, Kristjan; Tewari, Ambuj; Klasnja, Predrag; Murphy, SusanAdvances in neural information processing systems.2017 Dec;29225449
Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure.P Tafti, Ahmad; Badger, Jonathan; LaRose, Eric; Shirzadi, Ehsan; Mahnke, Andrea; Mayer, John; Ye, Zhan; Page, David; Peissig, PeggyJMIR medical informatics.2017 Dec 08;29222076
VisAGE: Integrating external knowledge into electronic medical record visualization.Huang, Edward W; Wang, Sheng; Zhai, ChengXiangPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2018;29218916
Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline.Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, PeterPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2018;29218892
Democratizing data science through data science training.Van Horn, John Darrell; Fierro, Lily; Kamdar, Jeana; Gordon, Jonathan; Stewart, Crystal; Bhattrai, Avnish; Abe, Sumiko; Lei, Xiaoxiao; O'Driscoll, Caroline; Sinha, Aakanchha; Jain, Priyambada; Burns, Gully; Lerman, Kristina; Ambite, José LuisPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2018;29218890
Large-scale analysis of disease pathways in the human interactome.Agrawal, Monica; Zitnik, Marinka; Leskovec, JurePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2018;29218874
Smaller Hippocampal Volume in Posttraumatic Stress Disorder: A Multisite ENIGMA-PGC Study: Subcortical Volumetry Results From Posttraumatic Stress Disorder Consortia.Logue, Mark W; van Rooij, Sanne J H; Dennis, Emily L; Davis, Sarah L; Hayes, Jasmeet P; Stevens, Jennifer S; Densmore, Maria; Haswell, Courtney C; Ipser, Jonathan; Koch, Saskia B J; Korgaonkar, Mayuresh; Lebois, Lauren A M; Peverill, Matthew; Baker, Justin T; Boedhoe, Premika S W; Frijling, Jessie L; Gruber, Staci A; Harpaz-Rotem, Ilan; Jahanshad, Neda; Koopowitz, Sheri; Levy, Ifat; Nawijn, Laura; O'Connor, Lauren; Olff, Miranda; Salat, David H; Sheridan, Margaret A; Spielberg, Jeffrey M; van Zuiden, Mirjam; Winternitz, Sherry R; Wolff, Jonathan D; Wolf, Erika J; Wang, Xin; Wrocklage, Kristen; Abdallah, Chadi G; Bryant, Richard A; Geuze, Elbert; Jovanovic, Tanja; Kaufman, Milissa L; King, Anthony P; Krystal, John H; Lagopoulos, Jim; Bennett, Maxwell; Lanius, Ruth; Liberzon, Israel; McGlinchey, Regina E; McLaughlin, Katie A; Milberg, William P; Miller, Mark W; Ressler, Kerry J; Veltman, Dick J; Stein, Dan J; Thomaes, Kathleen; Thompson, Paul M; Morey, Rajendra ABiological psychiatry.2018 Feb 01;29217296
KAT2A coupled with the ?-KGDH complex acts as a histone H3 succinyltransferase.Wang, Yugang; Guo, Yusong R; Liu, Ke; Yin, Zheng; Liu, Rui; Xia, Yan; Tan, Lin; Yang, Peiying; Lee, Jong-Ho; Li, Xin-Jian; Hawke, David; Zheng, Yanhua; Qian, Xu; Lyu, Jianxin; He, Jie; Xing, Dongming; Tao, Yizhi Jane; Lu, ZhiminNature.2017 12 14;29211711
Development and application of two semi-automated tools for targeted medical product surveillance in a distributed data network.Connolly, John G; Wang, Shirley V; Fuller, Candace C; Toh, Sengwee; Panozzo, Catherine A; Cocoros, Noelle; Zhou, Meijia; Gagne, Joshua J; Maro, Judith CCurrent epidemiology reports.2017 Dec;29204333
Estimating Effects of Dynamic Treatment Strategies in Pharmacoepidemiologic Studies with Time-varying Confounding: A Primer.Li, Xiaojuan; Young, Jessica G; Toh, SengweeCurrent epidemiology reports.2017 Dec;29204332
Pharmacoepidemiology in the era of real-world evidence.Toh, SengweeCurrent epidemiology reports.2017 Dec;29204331
Estimating bounds on causal effects in high-dimensional and possibly confounded systems.Malinsky, Daniel; Spirtes, PeterInternational journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society.2017 Sep;29203954
APPROXIMATING PRINCIPAL GENETIC COMPONENTS OF SUBCORTICAL SHAPE.Gutman, Boris A; Pizzagalli, Fabrizio; Jahanshad, Neda; Wright, Margaret J; McMahon, Katie L; de Zubicaray, Greig; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201284
A COMPARISON OF NETWORK DEFINITIONS FOR DETECTING SEX DIFFERENCES IN BRAIN CONNECTIVITY USING SUPPORT VECTOR MACHINES.Hafzalla, George W; Ragothaman, Anjanibhargavi; Faskowitz, Joshua; Jahanshad, Neda; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Braskie, Meredith N; Prasad, Gautam; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201283
THE IMPACT OF MATCHING FUNCTIONAL ON ATROPHY MEASUREMENT FROM GEODESIC SHOOTING IN DIFFEOMORPHISMS.Fleishman, Greg M; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201282
Graph theoretical approaches towards understanding differences in frontoparietal and default mode networks in Autism.Riedel, Brandalyn C; Jahanshad, Neda; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201281
A NETWORK APPROACH TO EXAMINING INJURY SEVERITY IN PEDIATRIC TBI.Dennis, Emily L; Rashid, Faisal; Jahanshad, Neda; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201280
MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS.Dennis, Emily L; Rashid, Faisal; Faskowitz, Josh; Jin, Yan; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Hickie, Ian B; Wright, Margaret J; Jahanshad, Neda; Thompson, Paul MProceedings. IEEE International Symposium on Biomedical Imaging.2017;29201279
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.Keenan, Alexandra B; Jenkins, Sherry L; Jagodnik, Kathleen M; Koplev, Simon; He, Edward; Torre, Denis; Wang, Zichen; Dohlman, Anders B; Silverstein, Moshe C; Lachmann, Alexander; Kuleshov, Maxim V; Ma'ayan, Avi; Stathias, Vasileios; Terryn, Raymond; Cooper, Daniel; Forlin, Michele; Koleti, Amar; Vidovic, Dusica; Chung, Caty; Schürer, Stephan C; Vasiliauskas, Jouzas; Pilarczyk, Marcin; Shamsaei, Behrouz; Fazel, Mehdi; Ren, Yan; Niu, Wen; Clark, Nicholas A; White, Shana; Mahi, Naim; Zhang, Lixia; Kouril, Michal; Reichard, John F; Sivaganesan, Siva; Medvedovic, Mario; Meller, Jaroslaw; Koch, Rick J; Birtwistle, Marc R; Iyengar, Ravi; Sobie, Eric A; Azeloglu, Evren U; Kaye, Julia; Osterloh, Jeannette; Haston, Kelly; Kalra, Jaslin; Finkbiener, Steve; Li, Jonathan; Milani, Pamela; Adam, Miriam; Escalante-Chong, Renan; Sachs, Karen; Lenail, Alex; Ramamoorthy, Divya; Fraenkel, Ernest; Daigle, Gavin; Hussain, Uzma; Coye, Alyssa; Rothstein, Jeffrey; Sareen, Dhruv; Ornelas, Loren; Banuelos, Maria; Mandefro, Berhan; Ho, Ritchie; Svendsen, Clive N; Lim, Ryan G; Stocksdale, Jennifer; Casale, Malcolm S; Thompson, Terri G; Wu, Jie; Thompson, Leslie M; Dardov, Victoria; Venkatraman, Vidya; Matlock, Andrea; Van Eyk, Jennifer E; Jaffe, Jacob D; Papanastasiou, Malvina; Subramanian, Aravind; Golub, Todd R; Erickson, Sean D; Fallahi-Sichani, Mohammad; Hafner, Marc; Gray, Nathanael S; Lin, Jia-Ren; Mills, Caitlin E; Muhlich, Jeremy L; Niepel, Mario; Shamu, Caroline E; Williams, Elizabeth H; Wrobel, David; Sorger, Peter K; Heiser, Laura M; Gray, Joe W; Korkola, James E; Mills, Gordon B; LaBarge, Mark; Feiler, Heidi S; Dane, Mark A; Bucher, Elmar; Nederlof, Michel; Sudar, Damir; Gross, Sean; Kilburn, David F; Smith, Rebecca; Devlin, Kaylyn; Margolis, Ron; Derr, Leslie; Lee, Albert; Pillai, AjayCell systems.2017 Nov 24;29199020
Methylation of OPRL1 mediates the effect of psychosocial stress on binge drinking in adolescents.Ruggeri, Barbara; Macare, Christine; Stopponi, Serena; Jia, Tianye; Carvalho, Fabiana M; Robert, Gabriel; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Sommer, Wolfgang H; Bakalkin, Georgy; Ciccocioppo, Roberto; Schumann, Gunter; IMAGEN consortiumJournal of child psychology and psychiatry, and allied disciplines.2017 Dec 02;29197086
Preterm birth leads to hyper-reactive cognitive control processing and poor white matter organization in adulthood.Olsen, Alexander; Dennis, Emily L; Evensen, Kari Anne I; Husby Hollund, Ingrid Marie; Løhaugen, Gro C C; Thompson, Paul M; Brubakk, Ann-Mari; Eikenes, Live; Håberg, Asta KNeuroImage.;29191480
Reactome diagram viewer: data structures and strategies to boost performance.Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Marin-Garcia, Pablo; Ping, Peipei; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, HenningBioinformatics (Oxford, England).;29186351
Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies.Kochunov, Peter; Dickie, Erin W; Viviano, Joseph D; Turner, Jessica; Kingsley, Peter B; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Fieremans, Els; Novikov, Dmitry; Veraart, Jelle; Hong, Elliot L; Malhotra, Anil K; Buchanan, Robert W; Chavez, Sofia; Voineskos, Aristotle NHuman brain mapping.2018 Feb;29181875
Neuroimaging genomics in psychiatry-a translational approach.Mufford, Mary S; Stein, Dan J; Dalvie, Shareefa; Groenewold, Nynke A; Thompson, Paul M; Jahanshad, NedaGenome medicine.2017 Nov 27;29179742
A volumetric conformal mapping approach for clustering white matter fibers in the brain.Gupta, Vikash; Prasad, Gautam; Thompson, PaulSpectral and shape analysis in medical imaging : first International Workshop, SeSAMI 2016, held in conjunction with MICCAI 2016, Athens, Greece, October 21, 2016 : revised selected papers. SeSAMI (Workshop) (1st : 2016 : Athens, Greece).2016 Oct;29177252
A Visual Analytics Approach to Understanding Care Process Variation and Conformance.Basole, Rahul C; Park, Hyunwoo; Gupta, Mayank; Braunstein, Mark L; Chau, Duen Horng; Thompson, MichaelProceedings of the 2015 Workshop on Visual Analytics in Healthcare.2015 Oct;29177250
Diffusion MRI in pediatric brain injury.Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FChild's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery.2017 Oct;29149383
A Continuous Model of Cortical Connectivity.Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul MMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.2016 Oct;29147688
Multi-modal Registration Improves Group Discrimination in Pediatric Traumatic Brain Injury.Dennis, Emily L; Rashid, Faisal; Villalon-Reina, Julio; Prasad, Gautam; Faskowitz, Joshua; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul MBrainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries : second International Workshop, BrainLes 2016, with the challenges on BRATS, ISLES and mTOP 2016, held in conjunction with MICCAI 2016, Athens, Greece, Octob....2016 Oct;29147687
Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.Chen, Chi-Hua; Wang, Yunpeng; Lo, Min-Tzu; Schork, Andrew; Fan, Chun-Chieh; Holland, Dominic; Kauppi, Karolina; Smeland, Olav B; Djurovic, Srdjan; Sanyal, Nilotpal; Hibar, Derrek P; Thompson, Paul M; Thompson, Wesley K; Andreassen, Ole A; Dale, Anders MScientific reports.;29147026
Cortical and Subcortical Brain Morphometry Differences Between Patients With Autism Spectrum Disorder and Healthy Individuals Across the Lifespan: Results From the ENIGMA ASD Working Group.van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Busatto, Geraldo F; Calderoni, Sara; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis Souza; Durston, Sarah; Ecker, Christine; Fair, Damien; Fedor, Jennifer; Fitzgerald, Jackie; Freitag, Christine M; Gallagher, Louise; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; Lerch, Jason; Luna, Beatriz; Martinho, Mauricio Moller; McGrath, Jane; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot; Thompson, Paul M; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Buitelaar, Jan KThe American journal of psychiatry.2018 04 01;29145754
Altered connectivity patterns among resting state networks in patients with ischemic white matter lesions.Ding, Ju-Rong; Ding, Xin; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Wang, Qingsong; Thompson, PaulBrain imaging and behavior.2018 Oct;29134612
Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics.Ding, Michael Q; Chen, Lujia; Cooper, Gregory F; Young, Jonathan D; Lu, XinghuaMolecular cancer research : MCR.2017 Nov 13;29133589
Enabling phenotypic big data with PheNorm.Yu, Sheng; Ma, Yumeng; Gronsbell, Jessica; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Liao, Katherine P; Cai, TianxiJournal of the American Medical Informatics Association : JAMIA.2018 01 01;29126253
An empirical Bayes test for allelic-imbalance detection in ChIP-seq.Zhang, Qi; Keles, SündüzBiostatistics (Oxford, England).;29126153
Privacy-preserving techniques of genomic data-a survey.Aziz, Md Momin Al; Sadat, Md Nazmus; Alhadidi, Dima; Wang, Shuang; Jiang, Xiaoqian; Brown, Cheryl L; Mohammed, NomanBriefings in bioinformatics.2019 05 21;29121240
Cardiac macrophage biology in the steady-state heart, the aging heart, and following myocardial infarction.Ma, Yonggang; Mouton, Alan J; Lindsey, Merry LTranslational research : the journal of laboratory and clinical medicine.2018 01;29106912
Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase.O'Banion, Colin P; Priestman, Melanie A; Hughes, Robert M; Herring, Laura E; Capuzzi, Stephen J; Lawrence, David SCell chemical biology.2017 Oct 25;29104065
Pharmacogenomics: Precision Medicine and Drug Response.Weinshilboum, Richard M; Wang, LieweiMayo Clinic proceedings.2017 Nov;29101939
Aggregating and Predicting Sequence Labels from Crowd Annotations.Nguyen, An T; Wallace, Byron C; Li, Junyi Jessy; Nenkova, Ani; Lease, MatthewProceedings of the conference. Association for Computational Linguistics. Meeting.2017;29093611
Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images.Spagnolo, Daniel M; Al-Kofahi, Yousef; Zhu, Peihong; Lezon, Timothy R; Gough, Albert; Stern, Andrew M; Lee, Adrian V; Ginty, Fiona; Sarachan, Brion; Taylor, D Lansing; Chennubhotla, S ChakraCancer research.2017 Nov 01;29092944
A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).Kuderna, Lukas F K; Tomlinson, Chad; Hillier, LaDeana W; Tran, Annabel; Fiddes, Ian T; Armstrong, Joel; Laayouni, Hafid; Gordon, David; Huddleston, John; Garcia Perez, Raquel; Povolotskaya, Inna; Serres Armero, Aitor; Gómez Garrido, Jèssica; Ho, Daniel; Ribeca, Paolo; Alioto, Tyler; Green, Richard E; Paten, Benedict; Navarro, Arcadi; Betranpetit, Jaume; Herrero, Javier; Eichler, Evan E; Sharp, Andrew J; Feuk, Lars; Warren, Wesley C; Marques-Bonet, TomasGigaScience.2017 Nov 01;29092041
To Three or not to Three: Improving Human Computation Game Onboarding with a Three-Star System.Gaston, Jacqueline; Cooper, SethProceedings of the SIGCHI conference on human factors in computing systems . CHI Conference.2017;29082386
WormBase 2017: molting into a new stage.Lee, Raymond Y N; Howe, Kevin L; Harris, Todd W; Arnaboldi, Valerio; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Davis, Paul; Gao, Sibyl; Grove, Christian; Kishore, Ranjana; Muller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Raciti, DNucleic acids research.2018 Jan 04;29069413
Imagining the ''open'' university: Sharing scholarship to improve research and education.McKiernan, Erin CPLoS biology.2017 Oct;29065148
An Assessment of Imaging Informatics for Precision Medicine in Cancer.Chennubhotla, C; Clarke, L P; Fedorov, A; Foran, D; Harris, G; Helton, E; Nordstrom, R; Prior, F; Rubin, D; Saltz, J H; Shalley, E; Sharma, AYearbook of medical informatics.2017 Aug;29063549
Grappling with the Future Use of Big Data for Translational Medicine and Clinical Care.Murphy, S; Castro, V; Mandl, KYearbook of medical informatics.2017 Aug;29063545
Translational MRI Volumetry with NeuroQuant: Effects of Version and Normative Data on Relationships with Memory Performance in Healthy Older Adults and Patients with Mild Cognitive Impairment.Stelmokas, Julija; Yassay, Lance; Giordani, Bruno; Dodge, Hiroko H; Dinov, Ivo D; Bhaumik, Arijit; Sathian, K; Hampstead, Benjamin MJournal of Alzheimer's disease : JAD.2017;29060939
PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals.Wenzel, Sally E; Tyurina, Yulia Y; Zhao, Jinming; St Croix, Claudette M; Dar, Haider H; Mao, Gaowei; Tyurin, Vladimir A; Anthonymuthu, Tamil S; Kapralov, Alexandr A; Amoscato, Andrew A; Mikulska-Ruminska, Karolina; Shrivastava, Indira H; Kenny, Elizabeth M; Yang, Qin; Rosenbaum, Joel C; Sparvero, Louis J; Emlet, David R; Wen, Xiaoyan; Minami, Yoshinori; Qu, Feng; Watkins, Simon C; Holman, Theodore R; VanDemark, Andrew P; Kellum, John A; Bahar, Ivet; Bay?r, Hülya; Kagan, Valerian ECell.2017 Oct 19;29053969
Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach.Wang, Shulei; Arena, Ellen T; Eliceiri, Kevin W; Yuan, MingIEEE transactions on image processing : a publication of the IEEE Signal Processing Society.2018 Feb;29053465
Pharmacogenomic Discovery to Function and Mechanism: Breast Cancer as a Case Study.Wang, Liewei; Ingle, James; Weinshilboum, RichardClinical pharmacology and therapeutics.2018 Feb;29052219
Variation in a range of mTOR-related genes associates with intracranial volume and intellectual disability.Reijnders, M R F; Kousi, M; van Woerden, G M; Klein, M; Bralten, J; Mancini, G M S; van Essen, T; Proietti-Onori, M; Smeets, E E J; van Gastel, M; Stegmann, A P A; Stevens, S J C; Lelieveld, S H; Gilissen, C; Pfundt, R; Tan, P L; Kleefstra, T; Franke, B; Elgersma, Y; Katsanis, N; Brunner, H GNature communications.2017 Oct 20;29051493
Using the Telephone Interview for Cognitive Status and Telephone Montreal Cognitive Assessment for Evaluating Vascular Cognitive Impairment: Promising Call or Put on Hold?Cohen, Ronald A; Alexander, Gene EStroke.2017 11;29042491
Widespread white matter microstructural differences in schizophrenia across 4322 individuals: results from the ENIGMA Schizophrenia DTI Working Group.Kelly, S; Jahanshad, N; Zalesky, A; Kochunov, P; Agartz, I; Alloza, C; Andreassen, O A; Arango, C; Banaj, N; Bouix, S; Bousman, C A; Brouwer, R M; Bruggemann, J; Bustillo, J; Cahn, W; Calhoun, V; Cannon, D; Carr, V; Catts, S; Chen, J; Chen, J-X; Chen, X; Chiapponi, C; Cho, Kl K; Ciullo, V; Corvin, A S; Crespo-Facorro, B; Cropley, V; De Rossi, P; Diaz-Caneja, C M; Dickie, E W; Ehrlich, S; Fan, F-M; Faskowitz, J; Fatouros-Bergman, H; Flyckt, L; Ford, J M; Fouche, J-P; Fukunaga, M; Gill, M; Glahn, D C; Gollub, R; Goudzwaard, E D; Guo, H; Gur, R E; Gur, R C; Gurholt, T P; Hashimoto, R; Hatton, S N; Henskens, F A; Hibar, D P; Hickie, I B; Hong, L E; Horacek, J; Howells, F M; Hulshoff Pol, H E; Hyde, C L; Isaev, D; Jablensky, A; Jansen, P R; Janssen, J; Jönsson, E G; Jung, L A; Kahn, R S; Kikinis, Z; Liu, K; Klauser, P; Knöchel, C; Kubicki, M; Lagopoulos, J; Langen, C; Lawrie, S; Lenroot, R K; Lim, K O; Lopez-Jaramillo, C; Lyall, A; Magnotta, V; Mandl, R C W; Mathalon, D H; McCarley, R W; McCarthy-Jones, S; McDonald, C; McEwen, S; McIntosh, A; Melicher, T; Mesholam-Gately, R I; Michie, P T; Mowry, B; Mueller, B A; Newell, D T; O'Donnell, P; Oertel-Knöchel, V; Oestreich, L; Paciga, S A; Pantelis, C; Pasternak, O; Pearlson, G; Pellicano, G R; Pereira, A; Pineda Zapata, J; Piras, F; Potkin, S G; Preda, A; Rasser, P E; Roalf, D R; Roiz, R; Roos, A; Rotenberg, D; Satterthwaite, T D; Savadjiev, P; Schall, U; Scott, R J; Seal, M L; Seidman, L J; Shannon Weickert, C; Whelan, C D; Shenton, M E; Kwon, J S; Spalletta, G; Spaniel, F; Sprooten, E; Stäblein, M; Stein, D J; Sundram, S; Tan, Y; Tan, S; Tang, S; Temmingh, H S; Westlye, L T; Tønnesen, S; Tordesillas-Gutierrez, D; Doan, N T; Vaidya, J; van Haren, N E M; Vargas, C D; Vecchio, D; Velakoulis, D; Voineskos, A; Voyvodic, J Q; Wang, Z; Wan, P; Wei, D; Weickert, T W; Whalley, H; White, T; Whitford, T J; Wojcik, J D; Xiang, H; Xie, Z; Yamamori, H; Yang, F; Yao, N; Zhang, G; Zhao, J; van Erp, T G M; Turner, J; Thompson, P M; Donohoe, GMolecular psychiatry.2018 05;29038599
County-level assessment of United States kindergarten vaccination rates for measles mumps rubella (MMR) for the 2014-2015 school year.Kluberg, Sheryl A; McGinnis, Denise P; Hswen, Yulin; Majumder, Maimuna S; Santillana, Mauricio; Brownstein, John SVaccine.;29037574
Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies.Wang, Meng; Ji, Zhanglong; Wang, Shuang; Kim, Jihoon; Yang, Hai; Jiang, Xiaoqian; Ohno-Machado, LucilaBioinformatics (Oxford, England).2017 Dec 01;29036461
Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling.Partha, Raghavendran; Chauhan, Bharesh K; Ferreira, Zelia; Robinson, Joseph D; Lathrop, Kira; Nischal, Ken K; Chikina, Maria; Clark, Nathan LeLife.2017 Oct 16;29035697
TeachEnG: a Teaching Engine for Genomics.Kim, Minji; Kim, Yeonsung; Qian, Lei; Song, Jun SBioinformatics (Oxford, England).2017 Oct 15;29028264
A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC.Campbell, Walter S; Karlsson, Daniel; Vreeman, Daniel J; Lazenby, Audrey J; Talmon, Geoffrey A; Campbell, James RJournal of the American Medical Informatics Association : JAMIA.2017 Sep 13;29024958
Landscape of X chromosome inactivation across human tissues.Tukiainen, Taru; Villani, Alexandra-Chloé; Yen, Angela; Rivas, Manuel A; Marshall, Jamie L; Satija, Rahul; Aguirre, Matt; Gauthier, Laura; Fleharty, Mark; Kirby, Andrew; Cummings, Beryl B; Castel, Stephane E; Karczewski, Konrad J; Aguet, François; Byrnes, Andrea; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Lappalainen, Tuuli; Regev, Aviv; Ardlie, Kristin G; Hacohen, Nir; MacArthur, Daniel GNature.2017 Oct 11;29022598
Genetic effects on gene expression across human tissues.GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Lead analysts:; Laboratory, Data Analysis &Coordinating Center (LDACC):; NIH program management:; Biospecimen collection:; Pathology:; eQTL manuscript working group:; Battle, Alexis; Brown, Christopher D; Engelhardt, Barbara E; Montgomery, Stephen BNature.2017 Oct 11;29022597
Dynamic landscape and regulation of RNA editing in mammals.Tan, Meng How; Li, Qin; Shanmugam, Raghuvaran; Piskol, Robert; Kohler, Jennefer; Young, Amy N; Liu, Kaiwen Ivy; Zhang, Rui; Ramaswami, Gokul; Ariyoshi, Kentaro; Gupte, Ankita; Keegan, Liam P; George, Cyril X; Ramu, Avinash; Huang, Ni; Pollina, Elizabeth A; Leeman, Dena S; Rustighi, Alessandra; Goh, Y P Sharon; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Chawla, Ajay; Del Sal, Giannino; Peltz, Gary; Brunet, Anne; Conrad, Donald F; Samuel, Charles E; O'Connell, Mary A; Walkley, Carl R; Nishikura, Kazuko; Li, Jin BillyNature.2017 Oct 11;29022589
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis.Yang, Fan; Wang, Jiebiao; GTEx Consortium; Pierce, Brandon L; Chen, Lin SGenome research.2017 Nov;29021290
Co-expression networks reveal the tissue-specific regulation of transcription and splicing.Saha, Ashis; Kim, Yungil; Gewirtz, Ariel D H; Jo, Brian; Gao, Chuan; McDowell, Ian C; GTEx Consortium; Engelhardt, Barbara E; Battle, AlexisGenome research.2017 Nov;29021288
Ultrafast Comparison of Personal Genomes via Precomputed Genome Fingerprints.Glusman, Gustavo; Mauldin, Denise E; Hood, Leroy E; Robinson, MaxFrontiers in genetics.2017;29018478
Association between anti-citrullinated fibrinogen antibodies and coronary artery disease in rheumatoid arthritis.Hejblum, Boris P; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Sparks, Jeffrey A; Sokolove, Jeremy; Cai, Tianxi; Liao, Katherine PArthritis care & research.2017 Oct 09;28992379
How Gamification Affects Physical Activity: Large-scale Analysis of Walking Challenges in a Mobile Application.Shameli, Ali; Althoff, Tim; Saberi, Amin; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2017 Apr;28990011
Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma.Young, Jonathan D; Cai, Chunhui; Lu, XinghuaBMC bioinformatics.2017 Oct 03;28984190
Applying family analyses to electronic health records to facilitate genetic research.Huang, Xiayuan; Elston, Robert C; Rosa, Guilherme J; Mayer, John; Ye, Zhan; Kitchner, Terrie; Brilliant, Murray H; Page, David; Hebbring, Scott J; Stegle, OliverBioinformatics (Oxford, England).2018 Feb 15;28968884
Structural Neuroimaging of Anorexia Nervosa: Future Directions in the Quest for Mechanisms Underlying Dynamic Alterations.King, Joseph A; Frank, Guido K W; Thompson, Paul M; Ehrlich, StefanBiological psychiatry.;28967386
IPI59: An Actionable Biomarker to Improve Treatment Response in Serous Ovarian Carcinoma Patients.Choi, J; Ye, S; Eng, K H; Korthauer, K; Bradley, W H; Rader, J S; Kendziorski, CStatistics in biosciences.2017 Jun;28966695
Causal Discovery from Nonstationary/Heterogeneous Data: Skeleton Estimation and Orientation Determination.Zhang, Kun; Huang, Biwei; Zhang, Jiji; Glymour, Clark; Schölkopf, BernhardIJCAI : proceedings of the conference.2017 Aug;28966540
Objective measurement of function following lumbar spinal stenosis decompression reveals improved functional capacity with stagnant real-life physical activity.Smuck, Matthew; Muaremi, Amir; Zheng, Patricia; Norden, Justin; Sinha, Aman; Hu, Richard; Tomkins-Lane, ChristyThe spine journal : official journal of the North American Spine Society.2018 Jan;28962914
Citizen science applied to building healthier community environments: advancing the field through shared construct and measurement development.Hinckson, Erica; Schneider, Margaret; Winter, Sandra J; Stone, Emily; Puhan, Milo; Stathi, Afroditi; Porter, Michelle M; Gardiner, Paul A; Dos Santos, Daniela Lopes; Wolff, Andrea; King, Abby CThe international journal of behavioral nutrition and physical activity.2017 Sep 29;28962580
EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING.Zhang, Jie; Fan, Yonghui; Li, Qingyang; Thompson, Paul M; Ye, Jieping; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2017 Apr;28959379
Algorithmic Advances and Applications from RECOMB 2017.Cell systems.2017 Sep 27;28957652
GraphSpace: stimulating interdisciplinary collaborations in network biology.Bharadwaj, Aditya; Singh, Divit P; Ritz, Anna; Tegge, Allison N; Poirel, Christopher L; Kraikivski, Pavel; Adames, Neil; Luther, Kurt; Kale, Shiv D; Peccoud, Jean; Tyson, John J; Murali, T MBioinformatics (Oxford, England).2017 Oct 01;28957495
Optimizing Open-Ended Crowdsourcing: The Next Frontier in Crowdsourced Data Management.Parameswaran, Aditya; Sarma, Akash Das; Venkataraman, VipulBulletin of the Technical Committee on Data Engineering.2016 Dec;28951893
DNA repair deficiency biomarkers and the 70-gene ultra-high risk signature as predictors of veliparib/carboplatin response in the I-SPY 2 breast cancer trial.Wolf, Denise M; Yau, Christina; Sanil, Ashish; Glas, Annuska; Petricoin, Emanuel; Wulfkuhle, Julia; Severson, Tesa M; Linn, Sabine; Brown-Swigart, Lamorna; Hirst, Gillian; Buxton, Meredith; DeMichele, Angela; Hylton, Nola; Symmans, Fraser; Yee, Doug; Paoloni, Melissa; Esserman, Laura; Berry, Don; Rugo, Hope; Olopade, Olufunmilayo; van 't Veer, LauraNPJ breast cancer.2017;28948212
Topographic Regularity for Tract Filtering in Brain Connectivity.Wang, Junyan; Aydogan, Dogu Baran; Varma, Rohit; Toga, Arthur W; Shi, YonggangInformation processing in medical imaging : proceedings of the ... conference.2017 Jun;28943732
Multi-Source Multi-Target Dictionary Learning for Prediction of Cognitive Decline.Zhang, Jie; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, YalinInformation processing in medical imaging : proceedings of the ... conference.2017 Jun;28943731
Creating a data resource: what will it take to build a medical information commons?Deverka, Patricia A; Majumder, Mary A; Villanueva, Angela G; Anderson, Margaret; Bakker, Annette C; Bardill, Jessica; Boerwinkle, Eric; Bubela, Tania; Evans, Barbara J; Garrison, Nanibaa' A; Gibbs, Richard A; Gentleman, Robert; Glazer, David; Goldstein, Melissa M; Greely, Hank; Harris, Crane; Knoppers, Bartha M; Koenig, Barbara A; Kohane, Isaac S; La Rosa, Salvatore; Mattison, John; O'Donnell, Christopher J; Rai, Arti K; Rehm, Heidi L; Rodriguez, Laura L; Shelton, Robert; Simoncelli, Tania; Terry, Sharon F; Watson, Michael S; Wilbanks, John; Cook-Deegan, Robert; McGuire, Amy LGenome medicine.2017 Sep 22;28938910
The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays.Schwenk, Jochen M; Omenn, Gilbert S; Sun, Zhi; Campbell, David S; Baker, Mark S; Overall, Christopher M; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric WJournal of proteome research.2017 Dec 01;28938075
Systematic integration of biomedical knowledge prioritizes drugs for repurposing.Himmelstein, Daniel Scott; Lizee, Antoine; Hessler, Christine; Brueggeman, Leo; Chen, Sabrina L; Hadley, Dexter; Green, Ari; Khankhanian, Pouya; Baranzini, Sergio EeLife.2017 Sep 22;28936969
Enhancing Diffusion MRI Measures By Integrating Grey and White Matter Morphometry With Hyperbolic Wasserstein Distance.Zhang, Wen; Shi, Jie; Yu, Jun; Zhan, Liang; Thompson, Paul M; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2017;28936280
Periodontal-induced chronic inflammation triggers macrophage secretion of Ccl12 to inhibit fibroblast-mediated cardiac wound healing.DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ero, Osasere K; Cates, Courtney A; Flynn, Elizabeth R; Cannon, Presley L; Jung, Mira; Shannon, De'Aries; Garrett, Michael R; Buchanan, William; Hall, Michael E; Ma, Yonggang; Lindsey, Merry LJCI insight.2017 Sep 21;28931761
Precision annotation of digital samples in NCBI's gene expression omnibus.Hadley, Dexter; Pan, James; El-Sayed, Osama; Aljabban, Jihad; Aljabban, Imad; Azad, Tej D; Hadied, Mohamad O; Raza, Shuaib; Rayikanti, Benjamin Abhishek; Chen, Bin; Paik, Hyojung; Aran, Dvir; Spatz, Jordan; Himmelstein, Daniel; Panahiazar, Maryam; Bhattacharya, Sanchita; Sirota, Marina; Musen, Mark A; Butte, Atul JScientific data.2017 Sep 19;28925997
Comments on ''Personalized dose finding using outcome weighted learning''.Fan, Jun; Yuan, MingJournal of the American Statistical Association.2017;28919653
ARCHITECTURAL PATTERNS FOR DIFFERENTIAL DIAGNOSIS OF PROLIFERATIVE BREAST LESIONS FROM HISTOPATHOLOGICAL IMAGES.Nguyen, L; Tosun, A B; Fine, J L; Taylor, D L; Chennubhotla, S CProceedings. IEEE International Symposium on Biomedical Imaging.2017 Apr;28890755
Unique transcriptomic response to sepsis is observed among patients of different age groups.Raymond, Steven L; López, María Cecilia; Baker, Henry V; Larson, Shawn D; Efron, Philip A; Sweeney, Timothy E; Khatri, Purvesh; Moldawer, Lyle L; Wynn, James LPloS one.2017;28886074
Predicting multicellular function through multi-layer tissue networks.Zitnik, Marinka; Leskovec, JureBioinformatics (Oxford, England).2017 Jul 15;28881986
Modelling haplotypes with respect to reference cohort variation graphs.Rosen, Yohei; Eizenga, Jordan; Paten, BenedictBioinformatics (Oxford, England).2017 Jul 15;28881971
Overdominant Effect of a CHRNA4 Polymorphism on Cingulo-Opercular Network Activity and Cognitive Control.Sadaghiani, Sepideh; Ng, Bernard; Altmann, Andre; Poline, Jean-Baptiste; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Gallinat, Jürgen; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Lemaitre, Hervé; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Napolioni, Valerio; Greicius, MichaelThe Journal of neuroscience : the official journal of the Society for Neuroscience.2017 10 04;28877969
Using information technology to improve surveillance of antimicrobial resistance in South East Asia.Vong, Sirenda; Anciaux, Amaury; Hulth, Anette; Stelling, John; Thamlikitkul, Visanu; Gupta, Sunil; Fuks, Jonas M; Walia, K?mini; Rattanumpawan, Pinyo; Eremin, Sergey; Tisocki, Klara; Sedai, Tika R; Sharma, AnujBMJ (Clinical research ed.).2017 09 05;28874344
Phelan-McDermid syndrome data network: Integrating patient reported outcomes with clinical notes and curated genetic reports.Kothari, Cartik; Wack, Maxime; Hassen-Khodja, Claire; Finan, Sean; Savova, Guergana; O'Boyle, Megan; Bliss, Geraldine; Cornell, Andria; Horn, Elizabeth J; Davis, Rebecca; Jacobs, Jacquelyn; Kohane, Isaac; Avillach, PaulAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.2017 Sep 01;28862395
Data-analysis strategies for image-based cell profiling.Caicedo, Juan C; Cooper, Sam; Heigwer, Florian; Warchal, Scott; Qiu, Peng; Molnar, Csaba; Vasilevich, Aliaksei S; Barry, Joseph D; Bansal, Harmanjit Singh; Kraus, Oren; Wawer, Mathias; Paavolainen, Lassi; Herrmann, Markus D; Rohban, Mohammad; Hung, Jane; Hennig, Holger; Concannon, John; Smith, Ian; Clemons, Paul A; Singh, Shantanu; Rees, Paul; Horvath, Peter; Linington, Roger G; Carpenter, Anne ENature methods.2017 Aug 31;28858338
A signal-based method for finding driver modules of breast cancer metastasis to the lung.Yan, Gaibo; Chen, Vicky; Lu, Xinghua; Lu, SongjianScientific reports.2017 08 30;28855549
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project.Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Overall, Christopher M; Deutsch, Eric WJournal of proteome research.2017 Dec 01;28853897
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.Deutsch, Eric W; Orchard, Sandra; Binz, Pierre-Alain; Bittremieux, Wout; Eisenacher, Martin; Hermjakob, Henning; Kawano, Shin; Lam, Henry; Mayer, Gerhard; Menschaert, Gerben; Perez-Riverol, Yasset; Salek, Reza M; Tabb, David L; Tenzer, Stefan; Vizcaíno, Juan Antonio; Walzer, Mathias; Jones, Andrew RJournal of proteome research.2017 Dec 01;28849660
Apolipoprotein E Genotype and Sex Risk Factors for Alzheimer Disease: A Meta-analysis.Neu, Scott C; Pa, Judy; Kukull, Walter; Beekly, Duane; Kuzma, Amanda; Gangadharan, Prabhakaran; Wang, Li-San; Romero, Klaus; Arneric, Stephen P; Redolfi, Alberto; Orlandi, Daniele; Frisoni, Giovanni B; Au, Rhoda; Devine, Sherral; Auerbach, Sanford; Espinosa, Ana; Boada, Mercè; Ruiz, Agustín; Johnson, Sterling C; Koscik, Rebecca; Wang, Jiun-Jie; Hsu, Wen-Chuin; Chen, Yao-Liang; Toga, Arthur WJAMA neurology.2017 Oct 01;28846757
High-Definition Medicine.Torkamani, Ali; Andersen, Kristian G; Steinhubl, Steven R; Topol, Eric JCell.2017 Aug 24;28841416
Refinement by integration: aggregated effects of multimodal imaging markers on adult ADHD.Wolfers, Thomas; Arenas, Alberto Llera; Onnink, A Marten H; Dammers, Janneke; Hoogman, Martine; Zwiers, Marcel P; Buitelaar, Jan K; Franke, Barbara; Marquand, Andre F; Beckmann, Christian FJournal of psychiatry & neuroscience : JPN.2017 Nov;28832320
Long Noncoding RNA Facilitated Gene Therapy Reduces Atherosclerosis in a Murine Model of Familial Hypercholesterolemia.Tontonoz, Peter; Wu, Xiaohui; Jones, Marius; Zhang, Zhengyi; Salisbury, David; Sallam, TamerCirculation.2017 Aug 22;28827223
Anxiety-related experience-dependent white matter structural differences in adolescence: A monozygotic twin difference approach.Adluru, Nagesh; Luo, Zhan; Van Hulle, Carol A; Schoen, Andrew J; Davidson, Richard J; Alexander, Andrew L; Goldsmith, H HillScientific reports.2017 Aug 18;28821748
SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort.Rueda, Manuel; Torkamani, AliBMC bioinformatics.2017 Aug 18;28821228
D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization.Sharma, Deepak K; Solbrig, Harold R; Prud'hommeaux, Eric; Lee, Kate; Pathak, Jyotishman; Jiang, GuoqianAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2017;28815140
Precision Diagnosis Of Melanoma And Other Skin Lesions From Digital Images.Bhattacharya, Abhishek; Young, Albert; Wong, Andrew; Stalling, Simone; Wei, Maria; Hadley, DexterAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.2017;28815132
Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance.Emad, Amin; Cairns, Junmei; Kalari, Krishna R; Wang, Liewei; Sinha, SaurabhGenome biology.2017 Aug 11;28800781
Utility of BI-RADS Assessment Category 4 Subdivisions for Screening Breast MRI.Strigel, Roberta M; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie R; DeMartini, Wendy BAJR. American journal of roentgenology.2017 Jun;28792802
PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension.Chen, Feng; Wang, Chenghong; Dai, Wenrui; Jiang, Xiaoqian; Mohammed, Noman; Al Aziz, Md Momin; Sadat, Md Nazmus; Sahinalp, Cenk; Lauter, Kristin; Wang, ShuangBMC medical genomics.2017 Jul 26;28786365
Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoid-derived hematologic malignancies.Kurtz, Stephen E; Eide, Christopher A; Kaempf, Andy; Khanna, Vishesh; Savage, Samantha L; Rofelty, Angela; English, Isabel; Ho, Hibery; Pandya, Ravi; Bolosky, William J; Poon, Hoifung; Deininger, Michael W; Collins, Robert; Swords, Ronan T; Watts, Justin; Pollyea, Daniel A; Medeiros, Bruno C; Traer, Elie; Tognon, Cristina E; Mori, Motomi; Druker, Brian J; Tyner, Jeffrey WProceedings of the National Academy of Sciences of the United States of America.2017 Sep 05;28784769
Consistency of BRCA1 and BRCA2 Variant Classifications Among Clinical Diagnostic Laboratories.Lincoln, Stephen E; Yang, Shan; Cline, Melissa S; Kobayashi, Yuya; Zhang, Can; Topper, Scott; Haussler, David; Paten, Benedict; Nussbaum, Robert LJCO precision oncology.2017 Jul;28782058
Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data.Shin, Sunyoung; Kele?, SündüzStatistics in biosciences.2017 Jun;28781711
Association of White Matter With Core Cognitive Deficits in Patients With Schizophrenia.Kochunov, Peter; Coyle, Thomas R; Rowland, Laura M; Jahanshad, Neda; Thompson, Paul M; Kelly, Sinead; Du, Xiaoming; Sampath, Hemalatha; Bruce, Heather; Chiappelli, Joshua; Ryan, Meghann; Fisseha, Feven; Savransky, Anya; Adhikari, Bhim; Chen, Shuo; Paciga, Sara A; Whelan, Christopher D; Xie, Zhiyong; Hyde, Craig L; Chen, Xing; Schubert, Christian R; O'Donnell, Patricio; Hong, L ElliotJAMA psychiatry.2017 Sep 01;28768312
Effect of tobacco smoking on frontal cortical thickness development: A longitudinal study in a mixed cohort of ADHD-affected and -unaffected youth.Akkermans, Sophie E A; van Rooij, Daan; Rommelse, Nanda; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Mennes, Maarten; Buitelaar, Jan KEuropean neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology.2017 10;28764867
Genome-wide association analysis identifies common variants influencing infant brain volumes.Xia, K; Zhang, J; Ahn, M; Jha, S; Crowley, J J; Szatkiewicz, J; Li, T; Zou, F; Zhu, H; Hibar, D; Thompson, P; ENIGMA Consortium; Sullivan, P F; Styner, M; Gilmore, J H; Knickmeyer, R CTranslational psychiatry.2017 Aug 01;28763065
Chalcone Derivatives: Promising Starting Points for Drug Design.Gomes, Marcelo N; Muratov, Eugene N; Pereira, Maristela; Peixoto, Josana C; Rosseto, Lucimar P; Cravo, Pedro V L; Andrade, Carolina H; Neves, Bruno JMolecules (Basel, Switzerland).2017 Jul 25;28757583
Principles of Dataset Versioning: Exploring the Recreation/Storage Tradeoff.Bhattacherjee, Souvik; Chavan, Amit; Huang, Silu; Deshpande, Amol; Parameswaran, AdityaProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;28752014
Mobile Monitoring of Traumatic Brain Injury in Older Adults: Challenges and Opportunities.Irimia, Andrei; Wei, Susan; Lu, Nanshu; Moore, Constance M; Kennedy, David NNeuroinformatics.2017 Jul;28748392
Testing the comparative effects of physical activity advice by humans vs. computers in underserved populations: The COMPASS trial design, methods, and baseline characteristics.King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Garcia, Dulce; Chazaro, Aldo; Blanco, German; Hauser, Michelle; Fierros, Fernando; Ahn, David K; Diaz, Jose; Done, Monica; Fernandez, Juan; Bickmore, TimothyContemporary clinical trials.2017 Oct;28739541
Modernization of Enoxaparin Molecular Weight Determination Using Homogeneous Standards.Arnold, Katelyn M; Capuzzi, Stephen J; Xu, Yongmei; Muratov, Eugene N; Carrick, Kevin; Szajek, Anita Y; Tropsha, Alexander; Liu, JianPharmaceuticals (Basel, Switzerland).2017 Jul 22;28737679
Shallow Representation Learning via Kernel PCA Improves QSAR Modelability.Rensi, Stefano E; Altman, Russ BJournal of chemical information and modeling.;28727421
Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM.Gutierrez-Barragan, Felipe; Ithapu, Vamsi K; Hinrichs, Chris; Maumet, Camille; Johnson, Sterling C; Nichols, Thomas E; Singh, Vikas; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2017 Oct 01;28720551
Gramene Database: Navigating Plant Comparative Genomics Resources.Gupta, Parul; Naithani, Sushma; Tello-Ruiz, Marcela Karey; Chougule, Kapeel; D'Eustachio, Peter; Fabregat, Antonio; Jiao, Yinping; Keays, Maria; Lee, Young Koung; Kumari, Sunita; Mulvaney, Joseph; Olson, Andrew; Preece, Justin; Stein, Joshua; Wei, Sharon; Weiser, Joel; Huerta, Laura; Petryszak, Robert; Kersey, Paul; Stein, Lincoln D; Ware, Doreen; Jaiswal, PankajCurrent plant biology.2016 Nov;28713666
A graph extension of the positional Burrows-Wheeler transform and its applications.Novak, Adam M; Garrison, Erik; Paten, BenedictAlgorithms for molecular biology : AMB.2017;28702075
Simulating ideal assistive devices to reduce the metabolic cost of walking with heavy loads.Dembia, Christopher L; Silder, Amy; Uchida, Thomas K; Hicks, Jennifer L; Delp, Scott LPloS one.2017;28700630
Large-scale physical activity data reveal worldwide activity inequality.Althoff, Tim; Sosi?, Rok; Hicks, Jennifer L; King, Abby C; Delp, Scott L; Leskovec, JureNature.2017 07 20;28693034
Origins of lymphatic and distant metastases in human colorectal cancer.Naxerova, Kamila; Reiter, Johannes G; Brachtel, Elena; Lennerz, Jochen K; van de Wetering, Marc; Rowan, Andrew; Cai, Tianxi; Clevers, Hans; Swanton, Charles; Nowak, Martin A; Elledge, Stephen J; Jain, Rakesh KScience (New York, N.Y.).2017 07 07;28684519
An exploration of crowdsourcing citation screening for systematic reviews.Mortensen, Michael L; Adam, Gaelen P; Trikalinos, Thomas A; Kraska, Tim; Wallace, Byron CResearch synthesis methods.2017 Jul 04;28677322
A Simple Approach to Shared Decision Making in Cancer Screening.Schrager, Sarina B; Phillips, Gina; Burnside, ElizabethFamily practice management.2017 May/Jun;28671358
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.Nadon, Celine; Van Walle, Ivo; Gerner-Smidt, Peter; Campos, Josefina; Chinen, Isabel; Concepcion-Acevedo, Jeniffer; Gilpin, Brent; Smith, Anthony M; Man Kam, Kai; Perez, Enrique; Trees, Eija; Kubota, Kristy; Takkinen, Johanna; Nielsen, Eva Møller; CarletoEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.2017 06 08;28662764
Inducing Domain-Specific Sentiment Lexicons from Unlabeled Corpora.Hamilton, William L; Clark, Kevin; Leskovec, Jure; Jurafsky, DanProceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing.2016 Nov;28660257
Machine Learning Consensus Scoring Improves Performance Across Targets in Structure-Based Virtual Screening.Ericksen, Spencer S; Wu, Haozhen; Zhang, Huikun; Michael, Lauren A; Newton, Michael A; Hoffmann, F Michael; Wildman, Scott AJournal of chemical information and modeling.2017 Jul 24;28654262
UpSetR: an R package for the visualization of intersecting sets and their properties.Conway, Jake R; Lex, Alexander; Gehlenborg, NilsBioinformatics (Oxford, England).2017 Sep 15;28645171
Predicting structured metadata from unstructured metadata.Posch, Lisa; Panahiazar, Maryam; Dumontier, Michel; Gevaert, OlivierDatabase : the journal of biological databases and curation.;28637268
Anxiety modulates the relation between attention-deficit/hyperactivity disorder severity and working memory-related brain activity.van der Meer, Dennis; Hoekstra, Pieter J; van Rooij, Daan; Winkler, Anderson M; van Ewijk, Hanneke; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Hartman, Catharina AThe world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry.2017 Mar 01;28635543
ClinVar data parsing.Zhang, Xiaolei; Minikel, Eric V; O'Donnell-Luria, Anne H; MacArthur, Daniel G; Ware, James S; Weisburd, BenWellcome open research.2017;28630944
Temporally Factorized Network Modeling for Evolutionary Network Analysis.Yu, Wenchao; Aggarwal, Charu C; Wang, WeiProceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining.2017 Feb;28626845
Big Data Analytics with Datalog Queries on Spark.Shkapsky, Alexander; Yang, Mohan; Interlandi, Matteo; Chiu, Hsuan; Condie, Tyson; Zaniolo, CarloProceedings. ACM-Sigmod International Conference on Management of Data.2016 Jun-Jul;28626296
Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO).Panahiazar, Maryam; Dumontier, Michel; Gevaert, OlivierJournal of biomedical informatics.;28625880
Psychosocial Stress and Brain Function in Adolescent Psychopathology.Quinlan, Erin Burke; Cattrell, Anna; Jia, Tianye; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Conrod, Patricia J; Desrivieres, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Glennon, Jeffrey C; Buitelaar, Jan K; Happé, Francesca; Loth, Eva; Barker, Edward D; Schumann, Gunter; IMAGEN ConsortiumThe American journal of psychiatry.2017 08 01;28618856
ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis.Zhang, Guohao; Kochunov, Peter; Hong, Elliot; Kelly, Sinead; Whelan, Christopher; Jahanshad, Neda; Thompson, Paul; Chen, JianBMC bioinformatics.2017 Jun 06;28617224
Characterising omission errors in everyday task completion and cognitive correlates in individuals with mild cognitive impairment and dementia.Beaver, Jenna; Wilson, Kaci B; Schmitter-Edgecombe, MaureenNeuropsychological rehabilitation2019 Jun28617099
The Arf6 activator Efa6/PSD3 confers regional specificity and modulates ethanol consumption in Drosophila and humans.Gonzalez, D A; Jia, T; Pinzón, J H; Acevedo, S F; Ojelade, S A; Xu, B; Tay, N; Desrivières, S; Hernandez, J L; Banaschewski, T; Büchel, C; Bokde, A L W; Conrod, P J; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P A; Heinz, A; Ittermann, B; Lathrop, M; Martinot, J-L; Paus, T; Smolka, M N; IMAGEN Consortium; Rodan, A R; Schumann, G; Rothenfluh, AMolecular psychiatry.2017 Jun 13;28607459
Association of longitudinal white matter degeneration and cerebrospinal fluid biomarkers of neurodegeneration, inflammation and Alzheimer's disease in late-middle-aged adults.Racine, Annie M; Merluzzi, Andrew P; Adluru, Nagesh; Norton, Derek; Koscik, Rebecca L; Clark, Lindsay R; Berman, Sara E; Nicholas, Christopher R; Asthana, Sanjay; Alexander, Andrew L; Blennow, Kaj; Zetterberg, Henrik; Kim, Won Hwa; Singh, Vikas; Carlsson, Cynthia M; Bendlin, Barbara B; Johnson, Sterling CBrain imaging and behavior.2017 Jun 09;28600739
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation.Martínez-Romero, Marcos; Jonquet, Clement; O'Connor, Martin J; Graybeal, John; Pazos, Alejandro; Musen, Mark AJournal of biomedical semantics.2017 Jun 07;28592275
Female-specific association of NOS1 genotype with white matter microstructure in ADHD patients and controls.van Ewijk, Hanneke; Bralten, Janita; van Duin, Esther D A; Hakobjan, Marina; Buitelaar, Jan K; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina; Hoogman, Martine; Oosterlaan, Jaap; Franke, BarbaraJournal of child psychology and psychiatry, and allied disciplines.2017 Aug;28589541
Predicting attention-deficit/hyperactivity disorder severity from psychosocial stress and stress-response genes: a random forest regression approach.van der Meer, D; Hoekstra, P J; van Donkelaar, M; Bralten, J; Oosterlaan, J; Heslenfeld, D; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C ATranslational psychiatry.2017 Jun 06;28585928
Dead simple OWL design patterns.Osumi-Sutherland, David; Courtot, Melanie; Balhoff, James P; Mungall, ChristopherJournal of biomedical semantics.2017 Jun 05;28583177
QSAR-driven design, synthesis and discovery of potent chalcone derivatives with antitubercular activity.Gomes, Marcelo N; Braga, Rodolpho C; Grzelak, Edyta M; Neves, Bruno J; Muratov, Eugene; Ma, Rui; Klein, Larry L; Cho, Sanghyun; Oliveira, Guilherme R; Franzblau, Scott G; Andrade, Carolina HortaEuropean journal of medicinal chemistry.2017 May 10;28582669
Genetic influences on individual differences in longitudinal changes in global and subcortical brain volumes: Results of the ENIGMA plasticity working group.Brouwer, Rachel M; Panizzon, Matthew S; Glahn, David C; Hibar, Derrek P; Hua, Xue; Jahanshad, Neda; Abramovic, Lucija; de Zubicaray, Greig I; Franz, Carol E; Hansell, Narelle K; Hickie, Ian B; Koenis, Marinka M G; Martin, Nicholas G; Mather, Karen A; McMahon, Katie L; Schnack, Hugo G; Strike, Lachlan T; Swagerman, Suzanne C; Thalamuthu, Anbupalam; Wen, Wei; Gilmore, John H; Gogtay, Nitin; Kahn, René S; Sachdev, Perminder S; Wright, Margaret J; Boomsma, Dorret I; Kremen, William S; Thompson, Paul M; Hulshoff Pol, Hilleke EHuman brain mapping.2017 Sep;28580697
Cultural Shift or Linguistic Drift? Comparing Two Computational Measures of Semantic Change.Hamilton, William L; Leskovec, Jure; Jurafsky, DanProceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing.2016 Nov;28580459
A review of active learning approaches to experimental design for uncovering biological networks.Sverchkov, Yuriy; Craven, MarkPLoS computational biology.2017 Jun;28570593
Structure-Leveraged Methods in Breast Cancer Risk Prediction.Fan, Jun; Wu, Yirong; Yuan, Ming; Page, David; Liu, Jie; Ong, Irene M; Peissig, Peggy; Burnside, ElizabethJournal of machine learning research : JMLR.2016 Dec;28559747
Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics.Barger, Jamie L; Vann, James M; Cray, Nicole L; Pugh, Thomas D; Mastaloudis, Angela; Hester, Shelly N; Wood, Steven M; Newton, Michael A; Weindruch, Richard; Prolla, Tomas AAging cell.2017 Aug;28556428
VISAGE: Interactive Visual Graph Querying.Pienta, Robert; Navathe, Shamkant; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen HorngAVI : proceedings of the Workshop on Advanced Visual Interfaces. AVI (Conference).2016 Jun;28553670
Statistical Methods for Latent Class Quantitative Trait Loci Mapping.Ye, Shuyun; Bacher, Rhonda; Keller, Mark P; Attie, Alan D; Kendziorski, ChristinaGenetics.2017 07;28550015
Prefrontal cortical thinning links to negative symptoms in schizophrenia via the ENIGMA consortium.Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Morch-Johnsen, L; Færden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Jahanshad, N; De Rossi, P; Piras, F; Banaj, N; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, SPsychological medicine.2018 Jan;28545597
Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach.Wallace, Byron C; Noel-Storr, Anna; Marshall, Iain J; Cohen, Aaron M; Smalheiser, Neil R; Thomas, JamesJournal of the American Medical Informatics Association : JAMIA.2017 Nov 01;28541493
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.Bernstein, Matthew N; Doan, AnHai; Dewey, Colin NBioinformatics (Oxford, England).2017 Sep 15;28535296
Using high-resolution variant frequencies to empower clinical genome interpretation.Whiffin, Nicola; Minikel, Eric; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel; Ware, James SGenetics in medicine : official journal of the American College of Medical Genetics.2017 Oct;28518168
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics.Vizcaíno, Juan Antonio; Mayer, Gerhard; Perkins, Simon; Barsnes, Harald; Vaudel, Marc; Perez-Riverol, Yasset; Ternent, Tobias; Uszkoreit, Julian; Eisenacher, Martin; Fischer, Lutz; Rappsilber, Juri; Netz, Eugen; Walzer, Mathias; Kohlbacher, Oliver; Leitner, Alexander; Chalkley, Robert J; Ghali, Fawaz; Martínez-Bartolomé, Salvador; Deutsch, Eric W; Jones, Andrew RMolecular & cellular proteomics : MCP.2017 Jul;28515314
Diverging volumetric trajectories following pediatric traumatic brain injury.Dennis, Emily L; Faskowitz, Joshua; Rashid, Faisal; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Jahanshad, Neda; Thompson, Paul M; Asarnow, Robert FNeuroImage. Clinical.2017;28507895
Heritability of Hippocampal Formation Sub-region Volumes.Greenspan, Kiefer S; Arakelian, Claire R; van Erp, Theo G MJournal of neurology and neuroscience.2016;28503392
L1-Regularized Least Squares for Support Recovery of High Dimensional Single Index Models with Gaussian Designs.Neykov, Matey; Liu, Jun S; Cai, TianxiJournal of machine learning research : JMLR.2016 May;28503101
Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions.Xia, Yin; Cai, Tianxi; Cai, T TonyBiometrika.2015 Jun;28502988
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.Jagodnik, Kathleen M; Koplev, Simon; Jenkins, Sherry L; Ohno-Machado, Lucila; Paten, Benedict; Schurer, Stephan C; Dumontier, Michel; Verborgh, Ruben; Bui, Alex; Ping, Peipei; McKenna, Neil J; Madduri, Ravi; Pillai, Ajay; Ma'ayan, AviJournal of biomedical informatics.2017 07;28501646
Continuous representations of brain connectivity using spatial point processes.Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul MMedical image analysis.2017 Oct;28487128
Discovering and linking public omics data sets using the Omics Discovery Index.Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; Hermjakob, HenningNature biotechnology.2017 05 09;28486464
Deep learning for healthcare: review, opportunities and challenges.Miotto, Riccardo; Wang, Fei; Wang, Shuang; Jiang, Xiaoqian; Dudley, Joel TBriefings in bioinformatics.2017 May 06;28481991
Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.Kleffner, Robert; Flatten, Jeff; Leaver-Fay, Andrew; Baker, David; Siegel, Justin B; Khatib, Firas; Cooper, SethBioinformatics (Oxford, England).2017 Sep 01;28481970
Experimental Design on a Budget for Sparse Linear Models and Applications.Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Singh, VikasJMLR workshop and conference proceedings.2016 Jun;28479945
Widespread Allelic Heterogeneity in Complex Traits.Hormozdiari, Farhad; Zhu, Anthony; Kichaev, Gleb; Ju, Chelsea J-T; Segrè, Ayellet V; Joo, Jong Wha J; Won, Hyejung; Sankararaman, Sriram; Pasaniuc, Bogdan; Shifman, Sagiv; Eskin, EleazarAmerican journal of human genetics.2017 May 04;28475861
Associations of the Intellectual Disability Gene MYT1L with Helix-Loop-Helix Gene Expression, Hippocampus Volume and Hippocampus Activation During Memory Retrieval.Kepa, Agnieszka; Martinez Medina, Lourdes; Erk, Susanne; Srivastava, Deepak P; Fernandes, Alinda; Toro, Roberto; Lévi, Sabine; Ruggeri, Barbara; Fernandes, Cathy; Degenhardt, Franziska; Witt, Stephanie H; Meyer-Lindenberg, Andreas; Poncer, Jean-Christophe; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Müller, Christian P; Heinz, Andreas; Walter, Henrik; Schumann, Gunter; Desrivières, SylvaneNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.2017 Dec;28470180
Subcortical brain structure and suicidal behaviour in major depressive disorder: a meta-analysis from the ENIGMA-MDD working group.Rentería, M E; Schmaal, L; Hibar, D P; Couvy-Duchesne, B; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hatton, S N; Lagopoulos, J; Veltman, D J; van der Wee, N; van Erp, T G M; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Godlewska, B R; Cowen, P J; Penninx, B W J H; Jahanshad, N; Thompson, P M; Wright, M J; Martin, N G; Christensen, H; Hickie, I BTranslational psychiatry.2017 May 02;28463239
Connectome imaging for mapping human brain pathways.Shi, Y; Toga, A WMolecular psychiatry.2017 Sep;28461700
Cortical abnormalities in bipolar disorder: an MRI analysis of 6503 individuals from the ENIGMA Bipolar Disorder Working Group.Hibar, D P; Westlye, L T; Doan, N T; Jahanshad, N; Cheung, J W; Ching, C R K; Versace, A; Bilderbeck, A C; Uhlmann, A; Mwangi, B; Krämer, B; Overs, B; Hartberg, C B; Abé, C; Dima, D; Grotegerd, D; Sprooten, E; Bøen, E; Jimenez, E; Howells, F M; Delvecchio, G; Temmingh, H; Starke, J; Almeida, J R C; Goikolea, J M; Houenou, J; Beard, L M; Rauer, L; Abramovic, L; Bonnin, M; Ponteduro, M F; Keil, M; Rive, M M; Yao, N; Yalin, N; Najt, P; Rosa, P G; Redlich, R; Trost, S; Hagenaars, S; Fears, S C; Alonso-Lana, S; van Erp, T G M; Nickson, T; Chaim-Avancini, T M; Meier, T B; Elvsåshagen, T; Haukvik, U K; Lee, W H; Schene, A H; Lloyd, A J; Young, A H; Nugent, A; Dale, A M; Pfennig, A; McIntosh, A M; Lafer, B; Baune, B T; Ekman, C J; Zarate, C A; Bearden, C E; Henry, C; Simhandl, C; McDonald, C; Bourne, C; Stein, D J; Wolf, D H; Cannon, D M; Glahn, D C; Veltman, D J; Pomarol-Clotet, E; Vieta, E; Canales-Rodriguez, E J; Nery, F G; Duran, F L S; Busatto, G F; Roberts, G; Pearlson, G D; Goodwin, G M; Kugel, H; Whalley, H C; Ruhe, H G; Soares, J C; Fullerton, J M; Rybakowski, J K; Savitz, J; Chaim, K T; Fatjó-Vilas, M; Soeiro-de-Souza, M G; Boks, M P; Zanetti, M V; Otaduy, M C G; Schaufelberger, M S; Alda, M; Ingvar, M; Phillips, M L; Kempton, M J; Bauer, M; Landén, M; Lawrence, N S; van Haren, N E M; Horn, N R; Freimer, N B; Gruber, O; Schofield, P R; Mitchell, P B; Kahn, R S; Lenroot, R; Machado-Vieira, R; Ophoff, R A; Sarró, S; Frangou, S; Satterthwaite, T D; Hajek, T; Dannlowski, U; Malt, U F; Arolt, V; Gattaz, W F; Drevets, W C; Caseras, X; Agartz, I; Thompson, P M; Andreassen, O AMolecular psychiatry.2017 May 02;28461699
Flexible Analog Search with Kernel PCA Embedded Molecule Vectors.Rensi, Stefano; Altman, Russ BComputational and structural biotechnology journal.2017;28458783
IL-10 improves cardiac remodeling after myocardial infarction by stimulating M2 macrophage polarization and fibroblast activation.Jung, Mira; Ma, Yonggang; Iyer, Rugmani Padmanabhan; DeLeon-Pennell, Kristine Y; Yabluchanskiy, Andriy; Garrett, Michael R; Lindsey, Merry LBasic research in cardiology.2017 May;28439731
The C677T variant in MTHFR modulates associations between brain integrity, mood, and cognitive functioning in old age.Roussotte, Florence F; Hua, Xue; Narr, Katherine L; Small, Gary W; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeBiological psychiatry. Cognitive neuroscience and neuroimaging.2017 Apr;28435933
Computer-aided discovery of two novel chalcone-like compounds active and selective against Leishmania infantum.Gomes, Marcelo N; Alcântara, Laura M; Neves, Bruno J; Melo-Filho, Cleber C; Freitas-Junior, Lucio H; Moraes, Carolina B; Ma, Rui; Franzblau, Scott G; Muratov, Eugene; Andrade, Carolina HortaBioorganic & medicinal chemistry letters.2017 Jun 01;28434763
Emerging Global Initiatives in Neurogenetics: The Enhancing Neuroimaging Genetics through Meta-analysis (ENIGMA) Consortium.Bearden, Carrie E; Thompson, Paul MNeuron.2017 Apr 19;28426957
Association of Patient Age With Outcomes of Current-Era, Large-Scale Screening Mammography: Analysis of Data From the National Mammography Database.Lee, Cindy S; Sengupta, Debapriya; Bhargavan-Chatfield, Mythreyi; Sickles, Edward A; Burnside, Elizabeth S; Zuley, Margarita LJAMA oncology.2017 Aug 01;28426842
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes.Roy, Sushmita; Sridharan, RupaGenome research.2017 Jul;28424352
Progressive Dictionary Learning with Hierarchical Predictive Structure for Scalable Video Coding.Dai, Wenrui; Shen, Yangmei; Xiong, Hongkai; Jiang, Xiaoqian; Zou, Junni; Taubman, DavidIEEE transactions on image processing : a publication of the IEEE Signal Processing Society.2017 Apr 12;28422683
Validation of the Sepsis MetaScore for Diagnosis of Neonatal Sepsis.Sweeney, Timothy E; Wynn, James L; Cernada, María; Serna, Eva; Wong, Hector R; Baker, Henry V; Vento, Máximo; Khatri, PurveshJournal of the Pediatric Infectious Diseases Society.2017 Apr 13;28419265
SCnorm: robust normalization of single-cell RNA-seq data.Bacher, Rhonda; Chu, Li-Fang; Leng, Ning; Gasch, Audrey P; Thomson, James A; Stewart, Ron M; Newton, Michael; Kendziorski, ChristinaNature methods.2017 Jun;28418000
Noise-induced symmetry breaking far from equilibrium and the emergence of biological homochirality.Jafarpour, Farshid; Biancalani, Tommaso; Goldenfeld, NigelPhysical review. E.2017 Mar;28415353
Matrix Metalloproteinases in Myocardial Infarction and Heart Failure.DeLeon-Pennell, Kristine Y; Meschiari, Cesar A; Jung, Mira; Lindsey, Merry LProgress in molecular biology and translational science.2017;28413032
Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides?Alves, Vinicius M; Muratov, Eugene N; Zakharov, Alexey; Muratov, Nail N; Andrade, Carolina H; Tropsha, AlexanderFood and chemical toxicology : an international journal published for the British Industrial Biological Research Association.2017 Apr 12;28412406
Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis.Agniel, Denis; Cai, TianxiBiometrics.2017 Dec;28407213
Optimizing Interactive Development of Data-Intensive Applications.Interlandi, Matteo; Tetali, Sai Deep; Gulzar, Muhammad Ali; Noor, Joseph; Condie, Tyson; Kim, Miryung; Millstein, ToddProceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference).2016 Oct;28405637
Omicseq: a web-based search engine for exploring omics datasets.Sun, Xiaobo; Pittard, William S; Xu, Tianlei; Chen, Li; Zwick, Michael E; Jiang, Xiaoqian; Wang, Fusheng; Qin, Zhaohui SNucleic acids research.2017 07 03;28402462
Toil enables reproducible, open source, big biomedical data analyses.Vivian, John; Rao, Arjun Arkal; Nothaft, Frank Austin; Ketchum, Christopher; Armstrong, Joel; Novak, Adam; Pfeil, Jacob; Narkizian, Jake; Deran, Alden D; Musselman-Brown, Audrey; Schmidt, Hannes; Amstutz, Peter; Craft, Brian; Goldman, Mary; Rosenbloom, Kate; Cline, Melissa; O'Connor, Brian; Hanna, Megan; Birger, Chet; Kent, W James; Patterson, David A; Joseph, Anthony D; Zhu, Jingchun; Zaranek, Sasha; Getz, Gad; Haussler, David; Paten, BenedictNature biotechnology.2017 Apr 11;28398314
EFhd2/Swiprosin-1 is a common genetic determinator for sensation-seeking/low anxiety and alcohol addiction.Mielenz, D; Reichel, M; Jia, T; Quinlan, E B; Stöckl, T; Mettang, M; Zilske, D; Kirmizi-Alsan, E; Schönberger, P; Praetner, M; Huber, S E; Amato, D; Schwarz, M; Purohit, P; Brachs, S; Spranger, J; Hess, A; Büttner, C; Ekici, A B; Perez-Branguli, F; Winner, B; Rauschenberger, V; Banaschewski, T; Bokde, A L W; Büchel, C; Conrod, P J; Desrivières, S; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Lemaitre, H; Nees, F; Paus, T; Smolka, M N; IMAGEN Consortium; Schambony, A; Bäuerle, T; Eulenburg, V; Alzheimer, C; Lourdusamy, A; Schumann, G; Müller, C PMolecular psychiatry.2018 May;28397836
A million variables and more: the Fast Greedy Equivalence Search algorithm for learning high-dimensional graphical causal models, with an application to functional magnetic resonance images.Ramsey, Joseph; Glymour, Madelyn; Sanchez-Romero, Ruben; Glymour, ClarkInternational journal of data science and analytics.2017 Mar;28393106
Shape Analysis with Hyperbolic Wasserstein Distance.Shi, Jie; Zhang, Wen; Wang, YalinProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2016 Jun;28392672
Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data.Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, DavidIJCAI : proceedings of the conference.2016 Jul;28392671
Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses.Baker, K S; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, H M; Guzmán-Verri, C; Mather, A E; Diaz Velasco, S; Zamudio Rojas, M L; Forbester, J L; Connor, T R; Keddy, K H; Smith, A M; López de Delgado, E A; AnClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.2017 Nov;28389276
Combining clinical and genomics queries using i2b2 - Three methods.Murphy, Shawn N; Avillach, Paul; Bellazzi, Riccardo; Phillips, Lori; Gabetta, Matteo; Eran, Alal; McDuffie, Michael T; Kohane, Isaac SPloS one.2017;28388645
Mutation of WIF1: a potential novel cause of a Nail-Patella-like disorder.Jones, Marilyn C; Topol, Sarah E; Rueda, Manuel; Oliveira, Glenn; Phillips, Tierney; Spencer, Emily G; Torkamani, AliGenetics in medicine : official journal of the American College of Medical Genetics.2017 Oct;28383544
Structuring supplemental materials in support of reproducibility.Greenbaum, Dov; Rozowsky, Joel; Stodden, Victoria; Gerstein, MarkGenome biology.2017 Apr 05;28381262
Positive symptoms associate with cortical thinning in the superior temporal gyrus via the ENIGMA Schizophrenia consortium.Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; Van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Mørch-Johnsen, L; Faerden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Preda, A; De Rossi, P; Piras, F; Banaj, N; Ciullo, V; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, SActa psychiatrica Scandinavica.2017 May;28369804
Envisioning the Future of 'Big Data' Biomedicine.Bui, Alex A T; Darrell Van Horn, John; NIH BD2K Centers ConsortiumJournal of biomedical informatics.2017 Mar 30;28366789
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.Putman, Tim E; Lelong, Sebastien; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Diesh, Colin; Dunn, Nathan; Munoz-Torres, Monica; Stupp, Gregory S; Wu, Chunlei; Su, Andrew I; Good, Benjamin MDatabase : the journal of biological databases and curation.2017 Jan 01;28365742
Cardiac Fibroblast Activation Post-Myocardial Infarction: Current Knowledge Gaps.Ma, Yonggang; Iyer, Rugmani Padmanabhan; Jung, Mira; Czubryt, Michael P; Lindsey, Merry LTrends in pharmacological sciences.2017 May;28365093
An algorithm for direct causal learning of influences on patient outcomes.Rathnam, Chandramouli; Lee, Sanghoon; Jiang, XiaArtificial intelligence in medicine.2017 Jan;28363452
Revealing common disease mechanisms shared by tumors of different tissues of origin through semantic representation of genomic alterations and topic modeling.Chen, Vicky; Paisley, John; Lu, XinghuaBMC genomics.2017 03 14;28361690
Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine.Ping, Peipei; Watson, Karol; Han, Jiawei; Bui, AlexCirculation research.2017 Mar 31;28360346
Genome graphs and the evolution of genome inference.Paten, Benedict; Novak, Adam M; Eizenga, Jordan M; Garrison, ErikGenome research.2017 May;28360232
Binary Classifier Calibration Using an Ensemble of Linear Trend Estimation.Naeini, Mahdi Pakdaman; Cooper, Gregory FProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2016 May;28357158
Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice.Saul, Michael C; Seward, Christopher H; Troy, Joseph M; Zhang, Huimin; Sloofman, Laura G; Lu, Xiaochen; Weisner, Patricia A; Caetano-Anolles, Derek; Sun, Hao; Zhao, Sihai Dave; Chandrasekaran, Sriram; Sinha, Saurabh; Stubbs, LisaGenome research.2017 06;28356321
Online Actions with Offline Impact: How Online Social Networks Influence Online and Offline User Behavior.Althoff, Tim; Jindal, Pranav; Leskovec, JureProceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining.2017 Feb;28345078
Large-scale Analysis of Counseling Conversations: An Application of Natural Language Processing to Mental Health.Althoff, Tim; Clark, Kevin; Leskovec, JureTransactions of the Association for Computational Linguistics.2016;28344978
SNAP: A General Purpose Network Analysis and Graph Mining Library.Leskovec, Jure; Sosi?, RokACM transactions on intelligent systems and technology.2016 Oct;28344853
The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows.O'Connor, Brian D; Yuen, Denis; Chung, Vincent; Duncan, Andrew G; Liu, Xiang Kun; Patricia, Janice; Paten, Benedict; Stein, Lincoln; Ferretti, VincentF1000Research.2017;28344774
Ensuring Rapid Mixing and Low Bias for Asynchronous Gibbs Sampling.De Sa, Christopher; Olukotun, Kunle; Ré, ChristopherJMLR workshop and conference proceedings.2016;28344730
Control Engineering Methods for the Design of Robust Behavioral Treatments.Bekiroglu, Korkut; Lagoa, Constantino; Murphy, Suzan A; Lanza, Stephanie TIEEE transactions on control systems technology : a publication of the IEEE Control Systems Society.2017 May;28344431
Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much.He, Bryan; De Sa, Christopher; Mitliagkas, Ioannis; Ré, ChristopherAdvances in neural information processing systems.2016;28344429
DeepDive: Declarative Knowledge Base Construction.De Sa, Christopher; Ratner, Alex; Ré, Christopher; Shin, Jaeho; Wang, Feiran; Wu, Sen; Zhang, CeSIGMOD record.2016 Mar;28344371
Privacy and Security in Mobile Health: A Research Agenda.Kotz, David; Gunter, Carl A; Kumar, Santosh; Weiner, Jonathan PComputer.2016 Jun;28344359
Muscle-tendon mechanics explain unexpected effects of exoskeleton assistance on metabolic rate during walking.Jackson, Rachel W; Dembia, Christopher L; Delp, Scott L; Collins, Steven HThe Journal of experimental biology.2017 Jun 01;28341663
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.Raisaro, Jean Louis; Tramèr, Florian; Ji, Zhanglong; Bu, Diyue; Zhao, Yongan; Carey, Knox; Lloyd, David; Sofia, Heidi; Baker, Dixie; Flicek, Paul; Shringarpure, Suyash; Bustamante, Carlos; Wang, Shuang; Jiang, Xiaoqian; Ohno-Machado, Lucila; Tang, Haixu; Wang, XiaoFeng; Hubaux, Jean-PierreJournal of the American Medical Informatics Association : JAMIA.2017 Jul 01;28339683
Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings.Sauerwald, Natalie; Zhang, She; Kingsford, Carl; Bahar, IvetNucleic acids research.2017 Apr 20;28334818
Use of WHONET-SaTScan system for simulated real-time detection of antimicrobial resistance clusters in a hospital in Italy, 2012 to 2014.Natale, Alessandra; Stelling, John; Meledandri, Marcello; Messenger, Louisa A; D'Ancona, FortunatoEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.2017 Mar 16;28333615
Network analysis: a novel method for mapping neonatal acute transport patterns in California.Kunz, S N; Zupancic, J A F; Rigdon, J; Phibbs, C S; Lee, H C; Gould, J B; Leskovec, J; Profit, JJournal of perinatology : official journal of the California Perinatal Association.2017 Jun;28333155
Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images.Nguyen, Luong; Tosun, Akif Burak; Fine, Jeffrey L; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S ChakraIEEE transactions on medical imaging.2017 Jul;28328502
Liberal Entity Extraction: Rapid Construction of Fine-Grained Entity Typing Systems.Huang, Lifu; May, Jonathan; Pan, Xiaoman; Ji, Heng; Ren, Xiang; Han, Jiawei; Zhao, Lin; Hendler, James ABig data.2017 03;28328252
Functional Neuroimaging Predictors of Self-Reported Psychotic Symptoms in Adolescents.Bourque, Josiane; Spechler, Philip A; Potvin, Stéphane; Whelan, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère-Martinot, Marie-Laure; McEwen, Sarah C; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Conrod, Patricia J; IMAGEN ConsortiumThe American journal of psychiatry.2017 06 01;28320226
Programming and Runtime Support to Blaze FPGA Accelerator Deployment at Datacenter Scale.Huang, Muhuan; Wu, Di; Yu, Cody Hao; Fang, Zhenman; Interlandi, Matteo; Condie, Tyson; Cong, JasonProceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference).2016 Oct;28317049
Computational Drug Repositioning Using Continuous Self-Controlled Case Series.Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, DavidKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;28316874
Binary Classifier Calibration using an Ensemble of Near Isotonic Regression Models.Naeini, Mahdi Pakdaman; Cooper, Gregory FProceedings. IEEE International Conference on Data Mining.2016 Dec;28316511
Extracting Databases from Dark Data with DeepDive.Zhang, Ce; Shin, Jaeho; Ré, Christopher; Cafarella, Michael; Niu, FengProceedings. ACM-Sigmod International Conference on Management of Data.2016 Jun-Jul;28316365
The impact of aging on cardiac extracellular matrix.Meschiari, Cesar A; Ero, Osasere Kelvin; Pan, Haihui; Finkel, Toren; Lindsey, Merry LGeroScience.2017 Feb;28299638
Diverging white matter trajectories in children after traumatic brain injury: The RAPBI study.Dennis, Emily L; Rashid, Faisal; Ellis, Monica U; Babikian, Talin; Vlasova, Roza M; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert FNeurology.2017 Apr 11;28298549
Augmented estimation for t-year survival with censored regression models.Zheng, Yu; Cai, TianxiBiometrics.2017 Dec;28294286
The authors reply.Sweeney, Timothy E; Khatri, PurveshCritical care medicine.2017 Apr;28291107
Laissez-Faire : Fully Asymmetric Backscatter Communication.Hu, Pan; Zhang, Pengyu; Ganesan, DeepakProceedings of ACM SIGCOMM ... Conference. ACM SIGCOMM Conference.2015 Aug;28286885
HSPA5 Gene encoding Hsp70 chaperone BiP in the endoplasmic reticulum.Wang, Jie; Lee, Jessica; Liem, David; Ping, PeipeiGene.2017 Jun 30;28286085
Measurement Error and Causal Discovery.Scheines, Richard; Ramsey, JosephCEUR workshop proceedings.2016 Jun;28280453
Sequence robust association test for familial data.Dai, Wei; Yang, Ming; Wang, Chaolong; Cai, TianxiBiometrics.2017 09;28273695
Modeling the Temporal Evolution of Postoperative Complications.Feld, Shara I; Cobian, Alexander G; Tevis, Sarah E; Kennedy, Gregory D; Craven, Mark WAMIA ... Annual Symposium proceedings. AMIA Symposium.2016;28269851
An Extended SNOMED CT Concept Model for Observations in Molecular Genetics.Campbell, James R; Talmon, Geoffrey; Cushman-Vokoun, Allison; Karlsson, Daniel; Scott Campbell, WAMIA ... Annual Symposium proceedings. AMIA Symposium.2016;28269830
Fractional anisotropy derived from the diffusion tensor distribution function boosts power to detect Alzheimer's disease deficits.Nir, Talia M; Jahanshad, Neda; Villalon-Reina, Julio E; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Zhan, Liang; Leow, Alex D; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Diseaase Neuroimaginng Initiative (ADNI)Magnetic resonance in medicine.2017 Dec;28266059
Latent Variable Graphical Model Selection using Harmonic Analysis: Applications to the Human Connectome Project (HCP).Kim, Won Hwa; Kim, Hyunwoo J; Adluru, Nagesh; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2016 Jun;28255221
Mammography Screening: Gaps in Patient's and Physician's Needs for Shared Decision-Making.DuBenske, Lori L; Schrager, Sarina; McDowell, Helene; Wilke, Lee G; Trentham-Dietz, Amy; Burnside, Elizabeth SThe breast journal.2017 Mar;28252231
Analytic Complexity and Challenges in Identifying Mixtures of Exposures Associated with Phenotypes in the Exposome Era.Patel, Chirag JCurrent epidemiology reports.2017;28251040
Reactome pathway analysis: a high-performance in-memory approach.Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Forner, Oscar; Marin-Garcia, Pablo; Arnau, Vicente; D'Eustachio, Peter; Stein, Lincoln; Hermjakob, HenningBMC bioinformatics.2017 Mar 02;28249561
Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation.Rahmani, Elior; Zaitlen, Noah; Baran, Yael; Eng, Celeste; Hu, Donglei; Galanter, Joshua; Oh, Sam; Burchard, Esteban G; Eskin, Eleazar; Zou, James; Halperin, EranNature methods.2017 Feb 28;28245214
Reproducibility of tract-based white matter microstructural measures using the ENIGMA-DTI protocol.Acheson, Ashley; Wijtenburg, S Andrea; Rowland, Laura M; Winkler, Anderson; Mathias, Charles W; Hong, L Elliot; Jahanshad, Neda; Patel, Binish; Thompson, Paul M; McGuire, Stephen A; Sherman, Paul M; Kochunov, Peter; Dougherty, Donald MBrain and behavior.2017 02;28239525
A Hybrid Causal Search Algorithm for Latent Variable Models.Ogarrio, Juan Miguel; Spirtes, Peter; Ramsey, JoeJMLR workshop and conference proceedings.2016 Aug;28239434
Domain Adaptation with Conditional Transferable Components.Gong, Mingming; Zhang, Kun; Liu, Tongliang; Tao, Dacheng; Glymour, Clark; Schölkopf, BernhardJMLR workshop and conference proceedings.2016 Jun;28239433
Inattention and Reaction Time Variability Are Linked to Ventromedial Prefrontal Volume in Adolescents.Albaugh, Matthew D; Orr, Catherine; Chaarani, Bader; Althoff, Robert R; Allgaier, Nicholas; D'Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Penttila, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra SBiological psychiatry.2017 Nov 01;28237458
Physical performance analysis: A new approach to assessing free-living physical activity in musculoskeletal pain and mobility-limited populations.Smuck, Matthew; Tomkins-Lane, Christy; Ith, Ma Agnes; Jarosz, Renata; Kao, Ming-Chih JeffreyPloS one.2017;28235039
Effects of dopaminergic genes, prenatal adversities, and their interaction on attention-deficit/hyperactivity disorder and neural correlates of response inhibition.van der Meer, Dennis; Hartman, Catharina A; van Rooij, Daan; Franke, Barbara; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Buitelaar, Jan K; Hoekstra, Pieter JJournal of psychiatry & neuroscience : JPN.2017 Mar;28234207
Data-Driven Contextual Valence Shifter Quantification for Multi-Theme Sentiment Analysis.Yu, Hongkun; Shang, Jingbo; Hsu, Meichun; Castellanos, Malú; Han, JiaweiProceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management.2016 Oct;28232874
Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group.BRAINS (Brain Imaging in Normal Subjects) Expert Working Group; Shenkin, Susan D; Pernet, Cyril; Nichols, Thomas E; Poline, Jean-Baptiste; Matthews, Paul M; van der Lugt, Aad; Mackay, Clare; Lanyon, Linda; Mazoyer, Bernard; Boardman, James P; Thompson, Paul M; Fox, Nick; Marcus, Daniel S; Sheikh, Aziz; Cox, Simon R; Anblagan, Devasuda; Job, Dominic E; Dickie, David Alexander; Rodriguez, David; Wardlaw, Joanna MNeuroImage.2017 Jun;28232121
Biologically Relevant Heterogeneity: Metrics and Practical Insights.Gough, Albert; Stern, Andrew M; Maier, John; Lezon, Timothy; Shun, Tong-Ying; Chennubhotla, Chakra; Schurdak, Mark E; Haney, Steven A; Taylor, D LansingSLAS discovery.2017 Mar;28231035
Pathogenic ASXL1 somatic variants in reference databases complicate germline variant interpretation for Bohring-Opitz Syndrome.Carlston, Colleen M; O'Donnell-Luria, Anne H; Underhill, Hunter R; Cummings, Beryl B; Weisburd, Ben; Minikel, Eric V; Birnbaum, Daniel P; Exome Aggregation Consortium; Tvrdik, Tatiana; MacArthur, Daniel G; Mao, RongHuman mutation.2017 May;28229513
Representing Documents via Latent Keyphrase Inference.Liu, Jialu; Ren, Xiang; Shang, Jingbo; Cassidy, Taylor; Voss, Clare R; Han, JiaweiProceedings of the ... International World-Wide Web Conference. International WWW Conference.2016 Apr;28229132
Chemoproteomic profiling and discovery of protein electrophiles in human cells.Matthews, Megan L; He, Lin; Horning, Benjamin D; Olson, Erika J; Correia, Bruno E; Yates 3rd, John R; Dawson, Philip E; Cravatt, Benjamin FNature chemistry.2017 Mar;28221344
Subcortical brain volume differences in participants with attention deficit hyperactivity disorder in children and adults: a cross-sectional mega-analysis.Hoogman, Martine; Bralten, Janita; Hibar, Derrek P; Mennes, Maarten; Zwiers, Marcel P; Schweren, Lizanne S J; van Hulzen, Kimm J E; Medland, Sarah E; Shumskaya, Elena; Jahanshad, Neda; Zeeuw, Patrick de; Szekely, Eszter; Sudre, Gustavo; Wolfers, Thomas; Onnink, Alberdingk M H; Dammers, Janneke T; Mostert, Jeanette C; Vives-Gilabert, Yolanda; Kohls, Gregor; Oberwelland, Eileen; Seitz, Jochen; Schulte-Rüther, Martin; Ambrosino, Sara; Doyle, Alysa E; Høvik, Marie F; Dramsdahl, Margaretha; Tamm, Leanne; van Erp, Theo G M; Dale, Anders; Schork, Andrew; Conzelmann, Annette; Zierhut, Kathrin; Baur, Ramona; McCarthy, Hazel; Yoncheva, Yuliya N; Cubillo, Ana; Chantiluke, Kaylita; Mehta, Mitul A; Paloyelis, Yannis; Hohmann, Sarah; Baumeister, Sarah; Bramati, Ivanei; Mattos, Paulo; Tovar-Moll, Fernanda; Douglas, Pamela; Banaschewski, Tobias; Brandeis, Daniel; Kuntsi, Jonna; Asherson, Philip; Rubia, Katya; Kelly, Clare; Martino, Adriana Di; Milham, Michael P; Castellanos, Francisco X; Frodl, Thomas; Zentis, Mariam; Lesch, Klaus-Peter; Reif, Andreas; Pauli, Paul; Jernigan, Terry L; Haavik, Jan; Plessen, Kerstin J; Lundervold, Astri J; Hugdahl, Kenneth; Seidman, Larry J; Biederman, Joseph; Rommelse, Nanda; Heslenfeld, Dirk J; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Polier, Georg von; Konrad, Kerstin; Vilarroya, Oscar; Ramos-Quiroga, Josep Antoni; Soliva, Joan Carles; Durston, Sarah; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Thompson, Paul M; Franke, BarbaraThe lancet. Psychiatry.2017 Apr;28219628
Mapping DNA methylation with high-throughput nanopore sequencing.Rand, Arthur C; Jain, Miten; Eizenga, Jordan M; Musselman-Brown, Audrey; Olsen, Hugh E; Akeson, Mark; Paten, BenedictNature methods.2017 Apr;28218897
Estimating Causal Effects with Ancestral Graph Markov Models.Malinsky, Daniel; Spirtes, PeterJMLR workshop and conference proceedings.2016 Aug;28217244
Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx).Solbrig, Harold R; Prud'hommeaux, Eric; Grieve, Grahame; McKenzie, Lloyd; Mandel, Joshua C; Sharma, Deepak K; Jiang, GuoqianJournal of biomedical informatics.2017 03;28213144
Septic Cardiomyopathy: Getting to the Heart of the Matter.Sweeney, Timothy E; Khatri, PurveshCritical care medicine.2017 Mar;28212222
A general statistical framework for subgroup identification and comparative treatment scoring.Chen, Shuai; Tian, Lu; Cai, Tianxi; Yu, MenggangBiometrics.2017 Dec;28211943
FacetGist: Collective Extraction of Document Facets in Large Technical Corpora.Siddiqui, Tarique; Ren, Xiang; Parameswaran, Aditya; Han, JiaweiProceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management.2016 Oct;28210517
Interactive Data Exploration with Smart Drill-Down.Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, AdityaProceedings. International Conference on Data Engineering.2016 May;28210096
Dynamics of Large Multi-View Social Networks: Synergy, Cannibalization and Cross-View Interplay.Shi, Yu; Kim, Myunghwan; Chatterjee, Shaunak; Tiwari, Mitul; Ghosh, Souvik; Rosales, RómerKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;28203486
Causal Discovery from Subsampled Time Series Data by Constraint Optimization.Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, DavidJMLR workshop and conference proceedings.2016 Aug;28203316
The Exposome Research Paradigm: an Opportunity to Understand the Environmental Basis for Human Health and Disease.Buck Louis, Germaine M; Smarr, Melissa M; Patel, Chirag JCurrent environmental health reports.2017 Mar;28194614
Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples.Kosmicki, Jack A; Samocha, Kaitlin E; Howrigan, Daniel P; Sanders, Stephan J; Slowikowski, Kamil; Lek, Monkol; Karczewski, Konrad J; Cutler, David J; Devlin, Bernie; Roeder, Kathryn; Buxbaum, Joseph D; Neale, Benjamin M; MacArthur, Daniel G; Wall, Dennis P; Robinson, Elise B; Daly, Mark JNature genetics.2017 Apr;28191890
Dual PI3K/mTOR Inhibition in Colorectal Cancers withAPCandPIK3CAMutations.Foley, Tyler M; Payne, Susan N; Pasch, Cheri A; Yueh, Alex E; Van De Hey, Dana R; Korkos, Demetra P; Clipson, Linda; Maher, Molly E; Matkowskyj, Kristina A; Newton, Michael A; Deming, Dustin AMolecular cancer research : MCR.2017 02 09;28184015
Predictive Modeling of Physician-Patient Dynamics That Influence Sleep Medication Prescriptions and Clinical Decision-Making.Beam, Andrew L; Kartoun, Uri; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Shaw, Stanley Y; Kohane, Isaac SScientific reports.2017 Feb 09;28181568
Independent value added by diffusion MRI for prediction of cognitive function in older adults.Scott, Julia A; Tosun, Duygu; Braskie, Meredith N; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNINeuroImage. Clinical.2017;28180075
Squish: Near-Optimal Compression for Archival of Relational Datasets.Gao, Yihan; Parameswaran, AdityaKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;28180028
Network-level assessment of reward-related activation in patients with ADHD and healthy individuals.von Rhein, Daniel; Beckmann, Christian F; Franke, Barbara; Oosterlaan, Jaap; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina A; Luman, Marjolein; Faraone, Stephen V; Cools, Roshan; Buitelaar, Jan K; Mennes, MaartenHuman brain mapping.2017 05;28176434
Mining Discriminative Patterns to Predict Health Status for Cardiopulmonary Patients.Cheng, Qian; Shang, Jingbo; Juen, Joshua; Han, Jiawei; Schatz, BruceACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine.2016 Oct;28174760
MACFP: Maximal Approximate Consecutive Frequent Pattern Mining under Edit Distance.Shang, Jingbo; Peng, Jian; Han, JiaweiProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2016 May;28174677
Effect of Physical Activity on Self-Reported Disability in Older Adults: Results from the LIFE Study.Manini, Todd M; Beavers, Daniel P; Pahor, Marco; Guralnik, Jack M; Spring, Bonnie; Church, Timothy S; King, Abby C; Folta, Sara C; Glynn, Nancy W; Marsh, Anthony P; Gill, Thomas M; LIFE study investigatorsJournal of the American Geriatrics Society.2017 May;28168689
Phantom PAINS: Problems with the Utility of Alerts for Pan-Assay INterference CompoundS.Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, AlexanderJournal of chemical information and modeling.2017 Mar 27;28165734
DPClass: An Effective but Concise Discriminative Patterns-Based Classification Framework.Shang, Jingbo; Tong, Wenzhu; Peng, Jian; Han, JiaweiProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2016 May;28163983
GMove: Group-Level Mobility Modeling Using Geo-Tagged Social Media.Zhang, Chao; Zhang, Keyang; Yuan, Quan; Zhang, Luming; Hanratty, Tim; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;28163978
Brain imaging genetics in ADHD and beyond - Mapping pathways from gene to disorder at different levels of complexity.Klein, Marieke; Onnink, Marten; van Donkelaar, Marjolein; Wolfers, Thomas; Harich, Benjamin; Shi, Yan; Dammers, Janneke; Arias-Vásquez, Alejandro; Hoogman, Martine; Franke, BarbaraNeuroscience and biobehavioral reviews.2017 Sep;28159610
Decibel: The Relational Dataset Branching System.Maddox, Michael; Goehring, David; Elmore, Aaron J; Madden, Samuel; Parameswaran, Aditya; Deshpande, AmolProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2016 May;28149668
Towards Globally Optimal Crowdsourcing Quality Management: The Uniform Worker Setting.Das Sarma, Akash; Parameswaran, Aditya; Widom, JenniferProceedings. ACM-Sigmod International Conference on Management of Data.2016 Jun-Jul;28149000
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.Griffith, Malachi; Spies, Nicholas C; Krysiak, Kilannin; McMichael, Joshua F; Coffman, Adam C; Danos, Arpad M; Ainscough, Benjamin J; Ramirez, Cody A; Rieke, Damian T; Kujan, Lynzey; Barnell, Erica K; Wagner, Alex H; Skidmore, Zachary L; Wollam, Amber; Liu, Connor J; Jones, Martin R; Bilski, Rachel L; Lesurf, Robert; Feng, Yan-Yang; Shah, Nakul M; Bonakdar, Melika; Trani, Lee; Matlock, Matthew; Ramu, Avinash; Campbell, Katie M; Spies, Gregory C; Graubert, Aaron P; Gangavarapu, Karthik; Eldred, James M; Larson, David E; Walker, Jason R; Good, Benjamin M; Wu, Chunlei; Su, Andrew I; Dienstmann, Rodrigo; Margolin, Adam A; Tamborero, David; Lopez-Bigas, Nuria; Jones, Steven J M; Bose, Ron; Spencer, David H; Wartman, Lukas D; Wilson, Richard K; Mardis, Elaine R; Griffith, Obi LNature genetics.2017 Jan 31;28138153
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.Rice, Edward S; Kohno, Satomi; John, John St; Pham, Son; Howard, Jonathan; Lareau, Liana F; O'Connell, Brendan L; Hickey, Glenn; Armstrong, Joel; Deran, Alden; Fiddes, Ian; Platt 2nd, Roy N; Gresham, Cathy; McCarthy, Fiona; Kern, Colin; Haan, David; Phan, Tan; Schmidt, Carl; Sanford, Jeremy R; Ray, David A; Paten, Benedict; Guillette Jr, Louis J; Green, Richard EGenome research.2017 May;28137821
Simultaneous Modeling of Disease Status and Clinical Phenotypes To Increase Power in Genome-Wide Association Studies.Bilow, Michael; Crespo, Fernando; Pan, Zhicheng; Eskin, Eleazar; Eyheramendy, SusanaGenetics.2017 Mar;28132020
White matter hyperintensities correlate to cognition and fiber tract integrity in older adults with HIV.Watson, Christa; Busovaca, Edgar; Foley, Jessica M; Allen, I Elaine; Schwarz, Christopher G; Jahanshad, Neda; Nir, Talia M; Esmaeili-Firidouni, Pardis; Milanini, Benedetta; Rosen, Howard; Carmichael, Owen T; Thompson, Paul M; Valcour, Victor GJournal of neurovirology.2017 Jun;28101804
Novel genetic loci associated with hippocampal volume.Hibar, Derrek P (see original citation for additional authors)Nature communications.2017 Jan 18;28098162
Brain substrates of reward processing and the ?-opioid receptor: a pathway into pain?Nees, Frauke; Becker, Susanne; Millenet, Sabina; Banaschewski, Tobias; Poustka, Luise; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Desrivières, Sylvane; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Flor, Herta; IMAGEN consortiumPain.;28092323
Hierarchical Span-Based Conditional Random Fields for Labeling and Segmenting Events in Wearable Sensor Data Streams.Adams, Roy J; Saleheen, Nazir; Thomaz, Edison; Parate, Abhinav; Kumar, Santosh; Marlin, Benjamin MProceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning.2016 Jun;28090606
Domain Adaptation Methods for Improving Lab-to-field Generalization of Cocaine Detection using Wearable ECG.Natarajan, Annamalai; Angarita, Gustavo; Gaiser, Edward; Malison, Robert; Ganesan, Deepak; Marlin, Benjamin MProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2016 Sep;28090605
Evaluating surrogate marker information using censored data.Parast, Layla; Cai, Tianxi; Tian, LuStatistics in medicine.2017 May 20;28088843
Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies.Nikolova, Olga; Moser, Russell; Kemp, Christopher; Gönen, Mehmet; Margolin, Adam ABioinformatics (Oxford, England).2017 May 01;28082455
Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information.Li, Xiao; Dunn, Jessilyn; Salins, Denis; Zhou, Gao; Zhou, Wenyu; Schüssler-Fiorenza Rose, Sophia Miryam; Perelman, Dalia; Colbert, Elizabeth; Runge, Ryan; Rego, Shannon; Sonecha, Ria; Datta, Somalee; McLaughlin, Tracey; Snyder, Michael PPLoS biology.2017 Jan;28081144
EmptyHeaded: A Relational Engine for Graph Processing.Aberger, Christopher R; Tu, Susan; Olukotun, Kunle; Ré, ChristopherProceedings. ACM-Sigmod International Conference on Management of Data.2016 Jun-Jul;28077912
Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health.Manrai, Arjun K; Cui, Yuxia; Bushel, Pierre R; Hall, Molly; Karakitsios, Spyros; Mattingly, Carolyn J; Ritchie, Marylyn; Schmitt, Charles; Sarigiannis, Denis A; Thomas, Duncan C; Wishart, David; Balshaw, David M; Patel, Chirag JAnnual review of public health.2017 03 20;28068484
Hyperbolic Space Sparse Coding with Its Application on Prediction of Alzheimer's Disease in Mild Cognitive Impairment.Zhang, Jie; Shi, Jie; Stonnington, Cynthia; Li, Qingyang; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, YalinMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.2016 Oct;28066843
Finding Significant Stress Episodes in a Discontinuous Time Series of Rapidly Varying Mobile Sensor Data.Sarker, Hillol; Tyburski, Matthew; Rahman, Md Mahbubur; Hovsepian, Karen; Sharmin, Moushumi; Epstein, David H; Preston, Kenzie L; Furr-Holden, C Debra; Milam, Adam; Nahum-Shani, Inbal; al'Absi, Mustafa; Kumar, SantoshProceedings of the SIGCHI conference on human factors in computing systems. CHI Conference.2016 May;28058409
mSieve: Differential Behavioral Privacy in Time Series of Mobile Sensor Data.Saleheen, Nazir; Chakraborty, Supriyo; Ali, Nasir; Mahbubur Rahman, Md; Hossain, Syed Monowar; Bari, Rummana; Buder, Eugene; Srivastava, Mani; Kumar, SantoshProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2016 Sep;28058408
Preparatory co-activation of the ankle muscles may prevent ankle inversion injuries.DeMers, Matthew S; Hicks, Jennifer L; Delp, Scott LJournal of biomechanics.2017 Feb 08;28057351
Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease.Mayers, Michael D; Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis WJournal of proteome research.2017 Feb 03;28052195
Identifying disordered eating behaviours in adolescents: how do parent and adolescent reports differ by sex and age?Bartholdy, Savani; Allen, Karina; Hodsoll, John; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Mennigen, Eva; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, UlrikeEuropean child & adolescent psychiatry.2017 Jun;28050706
Structured Matrix Completion with Applications to Genomic Data Integration.Cai, Tianxi; Cai, T Tony; Zhang, AnruJournal of the American Statistical Association.2016;28042188
Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of Tumorigenesis.Zhou, Zhuan; Luo, Aiping; Shrivastava, Indira; He, Mingjing; Huang, Yi; Bahar, Ivet; Liu, Zhihua; Wan, YongEBioMedicine.2017 Feb;28040451
Towards a Holistic Cortical Thickness Descriptor: Heat Kernel-Based Grey Matter Morphology Signatures.Wang, Gang; Wang, Yalin; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2017 Feb 15;28033566
A SMART data analysis method for constructing adaptive treatment strategies for substance use disorders.Nahum-Shani, Inbal; Ertefaie, Ashkan; Lu, Xi Lucy; Lynch, Kevin G; McKay, James R; Oslin, David W; Almirall, DanielAddiction (Abingdon, England).2017 May;28029718
Allostatic load and reduced cortical thickness in schizophrenia.Chiappelli, Joshua; Kochunov, Peter; Savransky, Anya; Fisseha, Feven; Wisner, Krista; Du, Xiaoming; Rowland, Laura M; Hong, L ElliotPsychoneuroendocrinology.2017 Mar;28027496
Relationship of a common OXTR gene variant to brain structure and default mode network function in healthy humans.Wang, Junping; Braskie, Meredith N; Hafzalla, George W; Faskowitz, Joshua; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Yu, Chunshui; Thompson, Paul MNeuroImage.2017 Feb 15;28017919
Proteomics Research in Cardiovascular Medicine and Biomarker Discovery.Lam, Maggie P Y; Ping, Peipei; Murphy, ElizabethJournal of the American College of Cardiology.2016 Dec 27;28007144
Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome.Garlid, Anders Olav; Polson, Jennifer S; Garlid, Keith D; Hermjakob, Henning; Ping, PeipeiHandbook of experimental pharmacology.2017;27995389
Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers.Spagnolo, Daniel M; Gyanchandani, Rekha; Al-Kofahi, Yousef; Stern, Andrew M; Lezon, Timothy R; Gough, Albert; Meyer, Dan E; Ginty, Fiona; Sarachan, Brion; Fine, Jeffrey; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S ChakraJournal of pathology informatics.2016;27994939
mCrave: Continuous Estimation of Craving During Smoking Cessation.Chatterjee, Soujanya; Hovsepian, Karen; Sarker, Hillol; Saleheen, Nazir; al'Absi, Mustafa; Atluri, Gowtham; Ertin, Emre; Lam, Cho; Lemieux, Andrine; Nakajima, Motohiro; Spring, Bonnie; Wetter, David W; Kumar, SantoshProceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference).2016 Sep;27990501
Screening Breast MRI Outcomes in Routine Clinical Practice: Comparison to BI-RADS Benchmarks.Strigel, Roberta M; Rollenhagen, Jennifer; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie; DeMartini, Wendy BAcademic radiology.2017 Apr;27986508
Cardiovascular proteomics in the era of big data: experimental and computational advances.Lam, Maggie P Y; Lau, Edward; Ng, Dominic C M; Wang, Ding; Ping, PeipeiClinical proteomics.2016;27980500
Heritability of the shape of subcortical brain structures in the general population.Roshchupkin, Gennady V; Gutman, Boris A; Vernooij, Meike W; Jahanshad, Neda; Martin, Nicholas G; Hofman, Albert; McMahon, Katie L; van der Lee, Sven J; van Duijn, Cornelia M; de Zubicaray, Greig I; Uitterlinden, André G; Wright, Margaret J; Niessen, Wiro J; Thompson, Paul M; Ikram, M Arfan; Adams, Hieab H HNature communications.2016 Dec 15;27976715
First Steps Into the Brave New Transdiscipline of Mobile Health.Spring, Bonnie; Pfammatter, Angela; Alshurafa, NabilJAMA cardiology.2017 Jan 01;27973672
Influence of donor age on induced pluripotent stem cells.Lo Sardo, Valentina; Ferguson, William; Erikson, Galina A; Topol, Eric J; Baldwin, Kristin K; Torkamani, AliNature biotechnology.2017 Jan;27941802
Large-scale identification of patients with cerebral aneurysms using natural language processing.Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Can, Anil; Abd-El-Barr, Muhammad; Gainer, Vivian; Shadick, Nancy A; Murphy, Shawn; Cai, Tianxi; Savova, Guergana; Weiss, Scott T; Du, RoseNeurology.2017 Jan 10;27927935
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.Deutsch, Eric W; Csordas, Attila; Sun, Zhi; Jarnuczak, Andrew; Perez-Riverol, Yasset; Ternent, Tobias; Campbell, David S; Bernal-Llinares, Manuel; Okuda, Shujiro; Kawano, Shin; Moritz, Robert L; Carver, Jeremy J; Wang, Mingxun; Ishihama, Yasushi; Bandeira, Nuno; Hermjakob, Henning; Vizcaíno, Juan AntonioNucleic acids research.2017 Jan 04;27924013
Childhood adversity impacts on brain subcortical structures relevant to depression.Frodl, Thomas; Janowitz, Deborah; Schmaal, Lianne; Tozzi, Leonardo; Dobrowolny, Henrik; Stein, Dan J; Veltman, Dick J; Wittfeld, Katharina; van Erp, Theo G M; Jahanshad, Neda; Block, Andrea; Hegenscheid, Katrin; Völzke, Henry; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Frey, Eva Maria; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Schnell, Knut; Grotegerd, Dominik; Arolt, Volker; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Zurowski, Bartosz; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Thompson, Paul M; Hibar, Derrek P; Dannlowski, Udo; Grabe, Hans JJournal of psychiatric research.2017 Mar;27918926
The UCSC Genome Browser database: 2017 update.Tyner, Cath; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Eisenhart, Christopher; Fischer, Clayton M; Gibson, David; Gonzalez, Jairo Navarro; Guruvadoo, Luvina; Haeussler, Maximilian; Heitner, Steve; Hinrichs, Angie S; Karolchik, Donna; Lee, Brian T; Lee, Christopher M; Nejad, Parisa; Raney, Brian J; Rosenbloom, Kate R; Speir, Matthew L; Villarreal, Chris; Vivian, John; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W JamesNucleic acids research.2017 Jan 04;27899642
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.Mungall, Christopher J; McMurry, Julie A; Köhler, Sebastian; Balhoff, James P; Borromeo, Charles; Brush, Matthew; Carbon, Seth; Conlin, Tom; Dunn, Nathan; Engelstad, Mark; Foster, Erin; Gourdine, J P; Jacobsen, Julius O B; Keith, Dan; Laraway, Bryan; Lewis, Suzanna E; NguyenXuan, Jeremy; Shefchek, Kent; Vasilevsky, Nicole; Yuan, Zhou; Washington, Nicole; Hochheiser, Harry; Groza, Tudor; Smedley, Damian; Robinson, Peter N; Haendel, Melissa ANucleic acids research.2017 01 04;27899636
The ExAC browser: displaying reference data information from over 60 000 exomes.Karczewski, Konrad J; Weisburd, Ben; Thomas, Brett; Solomonson, Matthew; Ruderfer, Douglas M; Kavanagh, David; Hamamsy, Tymor; Lek, Monkol; Samocha, Kaitlin E; Cummings, Beryl B; Birnbaum, Daniel; The Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel GNucleic acids research.2017 Jan 04;27899611
The Human Phenotype Ontology in 2017.Köhler, Sebastian; Vasilevsky, Nicole A; Engelstad, Mark; Foster, Erin; McMurry, Julie; Aymé, Ségolène; Baynam, Gareth; Bello, Susan M; Boerkoel, Cornelius F; Boycott, Kym M; Brudno, Michael; Buske, Orion J; Chinnery, Patrick F; Cipriani, Valentina; Connell, Laureen E; Dawkins, Hugh J S; DeMare, Laura E; Devereau, Andrew D; de Vries, Bert B A; Firth, Helen V; Freson, Kathleen; Greene, Daniel; Hamosh, Ada; Helbig, Ingo; Hum, Courtney; Jähn, Johanna A; James, Roger; Krause, Roland; F Laulederkind, Stanley J; Lochmüller, Hanns; Lyon, Gholson J; Ogishima, Soichi; Olry, Annie; Ouwehand, Willem H; Pontikos, Nikolas; Rath, Ana; Schaefer, Franz; Scott, Richard H; Segal, Michael; Sergouniotis, Panagiotis I; Sever, Richard; Smith, Cynthia L; Straub, Volker; Thompson, Rachel; Turner, Catherine; Turro, Ernest; Veltman, Marijcke W M; Vulliamy, Tom; Yu, Jing; von Ziegenweidt, Julie; Zankl, Andreas; Züchner, Stephan; Zemojtel, Tomasz; Jacobsen, Julius O B; Groza, Tudor; Smedley, Damian; Mungall, Christopher J; Haendel, Melissa; Robinson, Peter NNucleic acids research.2017 Jan 04;27899602
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements.Mi, Huaiyu; Huang, Xiaosong; Muruganujan, Anushya; Tang, Haiming; Mills, Caitlin; Kang, Diane; Thomas, Paul DNucleic acids research.2017 Jan 04;27899595
THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE.Garmire, Lana X; Gliske, Stephen; Nguyen, Quynh C; Chen, Jonathan H; Nemati, Shamim; VAN Horn, John D; Moore, Jason H; Shreffler, Carol; Dunn, MichellePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2016;27897014
DATA SHARING AND REPRODUCIBLE CLINICAL GENETIC TESTING: SUCCESSES AND CHALLENGES.Yang, Shan; Cline, Melissa; Zhang, Can; Paten, Benedict; Lincoln, Stephen EPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2017;27896972
EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.Haynes, Winston A; Vallania, Francesco; Liu, Charles; Bongen, Erika; Tomczak, Aurelie; Andres-Terrè, Marta; Lofgren, Shane; Tam, Andrew; Deisseroth, Cole A; Li, Matthew D; Sweeney, Timothy E; Khatri, PurveshPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2017;27896970
PROSNET: INTEGRATING HOMOLOGY WITH MOLECULAR NETWORKS FOR PROTEIN FUNCTION PREDICTION.Wang, Sheng; Qu, Meng; Peng, JianPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2017;27896959
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.Jain, Miten; Olsen, Hugh E; Paten, Benedict; Akeson, MarkGenome biology.2016 11 25;27887629
Genome-wide association studies of drug response and toxicity: an opportunity for genome medicine.Giacomini, Kathleen M; Yee, Sook Wah; Mushiroda, Taisei; Weinshilboum, Richard M; Ratain, Mark J; Kubo, MichiakiNature reviews. Drug discovery.2017 Jan;27885282
Enabling an Open Data Ecosystem for the Neurosciences.Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, BrianNeuron.2016 Nov 23;27883904
3D tract-specific local and global analysis of white matter integrity in Alzheimer's disease.Jin, Yan; Huang, Chao; Daianu, Madelaine; Zhan, Liang; Dennis, Emily L; Reid, Robert I; Jack Jr, Clifford R; Zhu, Hongtu; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeHuman brain mapping.2017 Mar;27883250
A review of validation strategies for computational drug repositioning.Brown, Adam S; Patel, Chirag JBriefings in bioinformatics.2018 01 01;27881429
Multimodal neuroimaging of male and female brain structure in health and disease across the life span.Jahanshad, Neda; Thompson, Paul MJournal of neuroscience research.2017 01 02;27870421
Colocalization of GWAS and eQTL Signals Detects Target Genes.Hormozdiari, Farhad; van de Bunt, Martijn; Segrè, Ayellet V; Li, Xiao; Joo, Jong Wha J; Bilow, Michael; Sul, Jae Hoon; Sankararaman, Sriram; Pasaniuc, Bogdan; Eskin, EleazarAmerican journal of human genetics.2016 Dec 01;27866706
Extension of research data repository system to support direct compute access to biomedical datasets: enhancing Dataverse to support large datasets.McKinney, Bill; Meyer, Peter A; Crosas, Mercè; Sliz, PiotrAnnals of the New York Academy of Sciences.2017 Jan;27862010
RNA-Binding Protein IGF2BP1 in Cutaneous Squamous Cell Carcinoma.Kim, TaeWon; Havighurst, Thomas; Kim, KyungMann; Hebbring, Scott J; Ye, Zhan; Aylward, Juliet; Keles, Sunduz; Xu, Yaohui G; Spiegelman, Vladimir SThe Journal of investigative dermatology.2017 Mar;27856289
Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set.Li, Hui; Zhu, Yitan; Burnside, Elizabeth S; Huang, Erich; Drukker, Karen; Hoadley, Katherine A; Fan, Cheng; Conzen, Suzanne D; Zuley, Margarita; Net, Jose M; Sutton, Elizabeth; Whitman, Gary J; Morris, Elizabeth; Perou, Charles M; Ji, Yuan; Giger, Maryellen LNPJ breast cancer.2016;27853751
Interpretable Decision Sets: A Joint Framework for Description and Prediction.Lakkaraju, Himabindu; Bach, Stephen H; Jure, LeskovecKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;27853627
node2vec: Scalable Feature Learning for Networks.Grover, Aditya; Leskovec, JureKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016 Aug;27853626
Development of a dynamic computational model of social cognitive theory.Riley, William T; Martin, Cesar A; Rivera, Daniel E; Hekler, Eric B; Adams, Marc A; Buman, Matthew P; Pavel, Misha; King, Abby CTranslational behavioral medicine.2016 12;27848208
A network-based phenotype mapping approach to identify genes that modulate drug response phenotypes.Cairns, Junmei; Ung, Choong Yong; da Rocha, Edroaldo Lummertz; Zhang, Cheng; Correia, Cristina; Weinshilboum, Richard; Wang, Liewei; Li, HuScientific reports.2016 Nov 14;27841317
Bias correction in species distribution models: pooling survey and collection data for multiple species.Fithian, William; Elith, Jane; Hastie, Trevor; Keith, David AMethods in ecology and evolution.2015 Apr;27840673
Topological false discovery rates for brain mapping based on signal height.Li, Junning; Gahm, Jin Kyu; Shi, Yonggang; Toga, Arthur WNeuroImage.;27838286
A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets.Zuo, Chandler; Chen, Kailei; Kele?, SündüzJournal of computational biology : a journal of computational molecular cell biology.2016 Nov 11;27835030
Private and Efficient Query Processing on Outsourced Genomic Databases.Ghasemi, Reza; Al Aziz, Md Momin; Mohammed, Noman; Dehkordi, Massoud Hadian; Jiang, XiaoqianIEEE journal of biomedical and health informatics.2017 09;27834660
Diffusion-weighted imaging uncovers likely sources of processing-speed deficits in schizophrenia.Kochunov, Peter; Rowland, Laura M; Fieremans, Els; Veraart, Jelle; Jahanshad, Neda; Eskandar, George; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Shukla, Dinesh; Sampath, Hemalatha; Thompson, Paul M; Hong, L ElliotProceedings of the National Academy of Sciences of the United States of America.2016 Nov 22;27834215
Growing Wikipedia Across Languages via Recommendation.Wulczyn, Ellery; West, Robert; Zia, Leila; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2016 Apr;27819073
Functional connectivity in cortico-subcortical brain networks underlying reward processing in attention-deficit/hyperactivity disorder.Oldehinkel, Marianne; Beckmann, Christian F; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, MaartenNeuroImage. Clinical.2016;27818941
Gait biomechanics in the era of data science.Ferber, Reed; Osis, Sean T; Hicks, Jennifer L; Delp, Scott LJournal of biomechanics.2016 12 08;27814971
Attention-Deficit/Hyperactivity Disorder symptoms coincide with altered striatal connectivity.Oldehinkel, Marianne; Beckmann, Christian F; Pruim, Raimon H R; van Oort, Erik S B; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, MaartenBiological psychiatry. Cognitive neuroscience and neuroimaging.2016 Jul;27812554
Tensor Spectral Clustering for Partitioning Higher-order Network Structures.Benson, Austin R; Gleich, David F; Leskovec, JureProceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining.2015;27812399
T2-Imaging Changes in the Nigrosome-1 Relate to Clinical Measures of Parkinson's Disease.Fu, Katherine A; Nathan, Romil; Dinov, Ivo D; Li, Junning; Toga, Arthur WFrontiers in neurology.2016;27812347
Coupled Harmonic Bases for Longitudinal Characterization of Brain Networks.Hwang, Seong Jae; Adluru, Nagesh; Collins, Maxwell D; Ravi, Sathya N; Bendlin, Barbara B; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2016 Jun-Jul;27812274
Enabling an Open Data Ecosystem for the Neurosciences.Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, BrianNeuron.2016 Nov 02;27810004
Adaptive Signal Recovery on Graphs via Harmonic Analysis for Experimental Design in Neuroimaging.Kim, Won Hwa; Hwang, Seong Jae; Adluru, Nagesh; Johnson, Sterling C; Singh, VikasComputer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision.2016 Oct;27807594
Quantifying unobserved protein-coding variants in human populations provides a roadmap for large-scale sequencing projects.Zou, James; Valiant, Gregory; Valiant, Paul; Karczewski, Konrad; Chan, Siu On; Samocha, Kaitlin; Lek, Monkol; Sunyaev, Shamil; Daly, Mark; MacArthur, Daniel GNature communications.2016 Oct 31;27796292
Abundant Inverse Regression using Sufficient Reduction and its Applications.Kim, Hyunwoo J; Smith, Brandon M; Adluru, Nagesh; Dyer, Charles R; Johnson, Sterling C; Singh, VikasComputer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision.2016 Oct;27796010
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia A; Lennartsson, Andreas; Drabløs, Finn; Ramilowski, Jordan A; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R R; Kasukawa, Takeya; Kawaji, HideyaNucleic acids research.2017 Jan 04;27794045
Objective measurement of free-living physical activity (performance) in lumbar spinal stenosis: are physical activity guidelines being met?Norden, Justin; Smuck, Matthew; Sinha, Aman; Hu, Richard; Tomkins-Lane, ChristyThe spine journal : official journal of the North American Spine Society.2017 Jan;27793759
Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis.Liao, Katherine P; Sparks, Jeffrey A; Hejblum, Boris P; Kuo, I-Hsin; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Gainer, Vivian S; Liu, Weidong; Cai, T Tony; Sokolove, Jeremy; Cai, TianxiArthritis & rheumatology (Hoboken, N.J.).2017 Apr;27792870
Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience.Links, Amanda E; Draper, David; Lee, Elizabeth; Guzman, Jessica; Valivullah, Zaheer; Maduro, Valerie; Lebedev, Vlad; Didenko, Maxim; Tomlin, Garrick; Brudno, Michael; Girdea, Marta; Dumitriu, Sergiu; Haendel, Melissa A; Mungall, Christopher J; Smedley, DaFrontiers in medicine.2016;27785453
A statistical approach for identifying differential distributions in single-cell RNA-seq experiments.Korthauer, Keegan D; Chu, Li-Fang; Newton, Michael A; Li, Yuan; Thomson, James; Stewart, Ron; Kendziorski, ChristinaGenome biology.2016 Oct 25;27782827
A database of human exposomes and phenomes from the US National Health and Nutrition Examination Survey.Patel, Chirag J; Pho, Nam; McDuffie, Michael; Easton-Marks, Jeremy; Kothari, Cartik; Kohane, Isaac S; Avillach, PaulScientific data.2016 10 25;27779619
Computational pan-genomics: status, promises and challenges.Computational Pan-Genomics ConsortiumBriefings in bioinformatics.2016 Oct 21;27769991
Causal Clustering for 1-Factor Measurement Models.Kummerfeld, Erich; Ramsey, JosephKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2016;27766182
Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data.Kang, Eun Yong; Martin, Lisa; Mangul, Serghei; Isvilanonda, Warin; Zou, Jennifer; Ben-David, Eyal; Han, Buhm; Lusis, Aldons J; Shifman, Sagiv; Eskin, EleazarGenetics.2016 Oct 07;27765809
Publicly Available Data Provide Evidence against NR1H3 R415Q Causing Multiple Sclerosis.Minikel, Eric Vallabh; MacArthur, Daniel GNeuron.2016 Oct 19;27764668
Signal-Oriented Pathway Analyses Reveal a Signaling Complex as a Synthetic Lethal Target for p53 Mutations.Lu, Songjian; Cai, Chunhui; Yan, Gonghong; Zhou, Zhuan; Wan, Yong; Chen, Vicky; Chen, Lujia; Cooper, Gregory F; Obeid, Lina M; Hannun, Yusuf A; Lee, Adrian V; Lu, XinghuaCancer research.2016 Dec 01;27758891
Exome chip analyses in adult attention deficit hyperactivity disorder.Zayats, T; Jacobsen, K K; Kleppe, R; Jacob, C P; Kittel-Schneider, S; Ribasés, M; Ramos-Quiroga, J A; Richarte, V; Casas, M; Mota, N R; Grevet, E H; Klein, M; Corominas, J; Bralten, J; Galesloot, T; Vasquez, A A; Herms, S; Forstner, A J; Larsson, H; Breen, G; Asherson, P; Gross-Lesch, S; Lesch, K P; Cichon, S; Gabrielsen, M B; Holmen, O L; Bau, C H D; Buitelaar, J; Kiemeney, L; Faraone, S V; Cormand, B; Franke, B; Reif, A; Haavik, J; Johansson, STranslational psychiatry.2016 10 18;27754487
Early matrix metalloproteinase-9 inhibition post-myocardial infarction worsens cardiac dysfunction by delaying inflammation resolution.Iyer, Rugmani Padmanabhan; de Castro Brás, Lisandra E; Patterson, Nicolle L; Bhowmick, Manishabrata; Flynn, Elizabeth R; Asher, Majdouline; Cannon, Presley L; Deleon-Pennell, Kristine Y; Fields, Gregg B; Lindsey, Merry LJournal of molecular and cellular cardiology.2016 Nov;27746126
Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex.Guadalupe, Tulio; Mathias, Samuel R; vanErp, Theo G M; Whelan, Christopher D; Zwiers, Marcel P; Abe, Yoshinari; Abramovic, Lucija; Agartz, Ingrid; Andreassen, Ole A; Arias-Vásquez, Alejandro; Aribisala, Benjamin S; Armstrong, Nicola J; Arolt, Volker; Artiges, Eric; Ayesa-Arriola, Rosa; Baboyan, Vatche G; Banaschewski, Tobias; Barker, Gareth; Bastin, Mark E; Baune, Bernhard T; Blangero, John; Bokde, Arun L W; Boedhoe, Premika S W; Bose, Anushree; Brem, Silvia; Brodaty, Henry; Bromberg, Uli; Brooks, Samantha; Büchel, Christian; Buitelaar, Jan; Calhoun, Vince D; Cannon, Dara M; Cattrell, Anna; Cheng, Yuqi; Conrod, Patricia J; Conzelmann, Annette; Corvin, Aiden; Crespo-Facorro, Benedicto; Crivello, Fabrice; Dannlowski, Udo; de Zubicaray, Greig I; de Zwarte, Sonja M C; Deary, Ian J; Desrivières, Sylvane; Doan, Nhat Trung; Donohoe, Gary; Dørum, Erlend S; Ehrlich, Stefan; Espeseth, Thomas; Fernández, Guillén; Flor, Herta; Fouche, Jean-Paul; Frouin, Vincent; Fukunaga, Masaki; Gallinat, Jürgen; Garavan, Hugh; Gill, Michael; Suarez, Andrea Gonzalez; Gowland, Penny; Grabe, Hans J; Grotegerd, Dominik; Gruber, Oliver; Hagenaars, Saskia; Hashimoto, Ryota; Hauser, Tobias U; Heinz, Andreas; Hibar, Derrek P; Hoekstra, Pieter J; Hoogman, Martine; Howells, Fleur M; Hu, Hao; Hulshoff Pol, Hilleke E; Huyser, Chaim; Ittermann, Bernd; Jahanshad, Neda; Jönsson, Erik G; Jurk, Sarah; Kahn, Rene S; Kelly, Sinead; Kraemer, Bernd; Kugel, Harald; Kwon, Jun Soo; Lemaitre, Herve; Lesch, Klaus-Peter; Lochner, Christine; Luciano, Michelle; Marquand, Andre F; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Martinot, Jean-Luc; Mataix-Cols, David; Mather, Karen; McDonald, Colm; McMahon, Katie L; Medland, Sarah E; Menchón, José M; Morris, Derek W; Mothersill, Omar; Maniega, Susana Munoz; Mwangi, Benson; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswaamy, Janardhanan C; Nees, Frauke; Nordvik, Jan E; Onnink, A Marten H; Opel, Nils; Ophoff, Roel; Paillère Martinot, Marie-Laure; Papadopoulos Orfanos, Dimitri; Pauli, Paul; Paus, Tomá?; Poustka, Luise; Reddy, Janardhan Yc; Renteria, Miguel E; Roiz-Santiáñez, Roberto; Roos, Annerine; Royle, Natalie A; Sachdev, Perminder; Sánchez-Juan, Pascual; Schmaal, Lianne; Schumann, Gunter; Shumskaya, Elena; Smolka, Michael N; Soares, Jair C; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Toro, Roberto; Turner, Jessica A; Tzourio-Mazoyer, Nathalie; Uhlmann, Anne; Hernández, Maria Valdés; van den Heuvel, Odile A; van der Meer, Dennis; van Haren, Neeltje E M; Veltman, Dick J; Venkatasubramanian, Ganesan; Vetter, Nora C; Vuletic, Daniella; Walitza, Susanne; Walter, Henrik; Walton, Esther; Wang, Zhen; Wardlaw, Joanna; Wen, Wei; Westlye, Lars T; Whelan, Robert; Wittfeld, Katharina; Wolfers, Thomas; Wright, Margaret J; Xu, Jian; Xu, Xiufeng; Yun, Je-Yeon; Zhao, JingJing; Franke, Barbara; Thompson, Paul M; Glahn, David C; Mazoyer, Bernard; Fisher, Simon E; Francks, ClydeBrain imaging and behavior.2017 Oct;27738994
Molecular Autopsy for Sudden Unexpected Death.Torkamani, Ali; Muse, Evan D; Spencer, Emily G; Rueda, Manuel; Wagner, Glenn N; Lucas, Jonathan R; Topol, Eric JJAMA.2016 Oct 11;27727376
Partitioning heritability analysis reveals a shared genetic basis of brain anatomy and schizophrenia.Lee, P H; Baker, J T; Holmes, A J; Jahanshad, N; Ge, T; Jung, J-Y; Cruz, Y; Manoach, D S; Hibar, D P; Faskowitz, J; McMahon, K L; de Zubicaray, G I; Martin, N H; Wright, M J; Öngür, D; Buckner, R; Roffman, J; Thompson, P M; Smoller, J WMolecular psychiatry.2016 Dec;27725656
A regulatory circuit of miR-125b/miR-20b and Wnt signalling controls glioblastoma phenotypes through FZD6-modulated pathways.Huang, Tianzhi; Alvarez, Angel A; Pangeni, Rajendra P; Horbinski, Craig M; Lu, Songjian; Kim, Sung-Hak; James, C David; J Raizer, Jeffery; A Kessler, John; Brenann, Cameron W; Sulman, Erik P; Finocchiaro, Gaetano; Tan, Ming; Nishikawa, Ryo; Lu, Xinghua; Nakano, Ichiro; Hu, Bo; Cheng, Shi-YuanNature communications.2016 10 04;27698350
Ultra-rare disruptive and damaging mutations influence educational attainment in the general population.Ganna, Andrea; Genovese, Giulio; Howrigan, Daniel P; Byrnes, Andrea; Kurki, Mitja; Zekavat, Seyedeh M; Whelan, Christopher W; Kals, Mart; Nivard, Michel G; Bloemendal, Alex; Bloom, Jonathan M; Goldstein, Jacqueline I; Poterba, Timothy; Seed, Cotton; Handsaker, Robert E; Natarajan, Pradeep; Mägi, Reedik; Gage, Diane; Robinson, Elise B; Metspalu, Andres; Salomaa, Veikko; Suvisaari, Jaana; Purcell, Shaun M; Sklar, Pamela; Kathiresan, Sekar; Daly, Mark J; McCarroll, Steven A; Sullivan, Patrick F; Palotie, Aarno; Esko, Tõnu; Hultman, Christina; Neale, Benjamin MNature neuroscience.2016 12;27694993
Novel genetic loci underlying human intracranial volume identified through genome-wide association.Adams, Hieab H H (see original citation for additional authors)Nature neuroscience.2016 12;27694991
Phase i trials in melanoma: A framework to translate preclinical findings to the clinic.Kim, Eunjung; Rebecca, Vito W; Smalley, Keiran S M; Anderson, Alexander R AEuropean journal of cancer (Oxford, England : 1990).2016 Nov;27689717
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs.Zerbino, Daniel R; Ballinger, Tracy; Paten, Benedict; Hickey, Glenn; Haussler, DavidBMC bioinformatics.2016 Sep 29;27687569
MeSHDD: Literature-based drug-drug similarity for drug repositioning.Brown, Adam S; Patel, Chirag JJournal of the American Medical Informatics Association : JAMIA.2016 Sep 27;27678460
Quantitative magnetic resonance imaging traits as endophenotypes for genetic mapping in epilepsy.Alhusaini, Saud; Whelan, Christopher D; Sisodiya, Sanjay M; Thompson, Paul MNeuroImage. Clinical.2016;27672556
Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications.Tao, Chenyang; Nichols, Thomas E; Hua, Xue; Ching, Christopher R K; Rolls, Edmund T; Thompson, Paul M; Feng, Jianfeng; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2017 Jan 01;27666385
Just-in-Time Adaptive Interventions (JITAIs) in Mobile Health: Key Components and Design Principles for Ongoing Health Behavior Support.Nahum-Shani, Inbal; Smith, Shawna N; Spring, Bonnie J; Collins, Linda M; Witkiewitz, Katie; Tewari, Ambuj; Murphy, Susan AAnnals of behavioral medicine : a publication of the Society of Behavioral Medicine.2016 Sep 23;27663578
Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running.Uchida, Thomas K; Seth, Ajay; Pouya, Soha; Dembia, Christopher L; Hicks, Jennifer L; Delp, Scott LPloS one.2016;27656901
Actigraphy features for predicting mobility disability in older adults.Kheirkhahan, Matin; Tudor-Locke, Catrine; Axtell, Robert; Buman, Matthew P; Fielding, Roger A; Glynn, Nancy W; Guralnik, Jack M; King, Abby C; White, Daniel K; Miller, Michael E; Siddique, Juned; Brubaker, Peter; Rejeski, W Jack; Ranshous, Stephen; Pahor, Marco; Ranka, Sanjay; Manini, Todd MPhysiological measurement.2016 Sep 21;27653966
Adapting extracellular matrix proteomics for clinical studies on cardiac remodeling post-myocardial infarction.Lindsey, Merry L; Hall, Michael E; Harmancey, Romain; Ma, YonggangClinical proteomics.2016;27651752
Conformal invariants for multiply connected surfaces: Application to landmark curve-based brain morphometry analysis.Shi, Jie; Zhang, Wen; Tang, Miao; Caselli, Richard J; Wang, YalinMedical image analysis.2017 Jan;27639215
Cerebral amyloid is associated with greater white-matter hyperintensity accrual in cognitively normal older adults.Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNINeurobiology of aging.2016 12;27639120
Methods to increase reproducibility in differential gene expression via meta-analysis.Sweeney, Timothy E; Haynes, Winston A; Vallania, Francesco; Ioannidis, John P; Khatri, PurveshNucleic acids research.2017 01 09;27634930
Ruminative brooding is associated with salience network coherence in early pubertal youth.Ordaz, Sarah J; LeMoult, Joelle; Colich, Natalie L; Prasad, Gautam; Pollak, Madeline; Popolizio, Morgan; Price, Alexandra; Greicius, Michael; Gotlib, Ian HSocial cognitive and affective neuroscience.2017 Feb 01;27633394
Surrogate-assisted feature extraction for high-throughput phenotyping.Yu, Sheng; Chakrabortty, Abhishek; Liao, Katherine P; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, TianxiJournal of the American Medical Informatics Association : JAMIA.;27632993
Perspective: Beyond the genome.Leppert, John; Patel, ChiragNature.2016 09 15;27626778
Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates.Sievers, Chelsie K; Zou, Luli S; Pickhardt, Perry J; Matkowskyj, Kristina A; Albrecht, Dawn M; Clipson, Linda; Bacher, Jeffery W; Pooler, B Dustin; Moawad, Fouad J; Cash, Brooks D; Reichelderfer, Mark; Vo, Tien N; Newton, Michael A; Larget, Bret R; Halberg, Richard BGut.2016 Sep 08;27609830
Distinct Subcortical Volume Alterations in Pediatric and Adult OCD: A Worldwide Meta- and Mega-Analysis.Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Ameis, Stephanie H; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Fitzgerald, Kate D; Fouche, Jean-Paul; Giménez, Mònica; Gruner, Patricia; Hanna, Gregory L; Hibar, Derrek P; Hoexter, Marcelo Q; Hu, Hao; Huyser, Chaim; Ikari, Keisuke; Jahanshad, Neda; Kathmann, Norbert; Kaufmann, Christian; Koch, Kathrin; Kwon, Jun Soo; Lazaro, Luisa; Liu, Yanni; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Piras, Fabrizio; Piras, Federica; Pittenger, Christopher; Reddy, Y C Janardhan; Sato, Joao R; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stevens, Michael C; Szeszko, Philip R; Tolin, David F; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; van Wingen, Guido A; Xu, Jian; Xu, Xiufeng; Yun, Je-Yeon; Zhao, Qing; ENIGMA OCD Working Group; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile AThe American journal of psychiatry.2017 01 01;27609241
Overview of the interactive task in BioCreative V.Wang, Qinghua; S Abdul, Shabbir; Almeida, Lara; Ananiadou, Sophia; Balderas-Martínez, Yalbi I; Batista-Navarro, Riza; Campos, David; Chilton, Lucy; Chou, Hui-Jou; Contreras, Gabriela; Cooper, Laurel; Dai, Hong-Jie; Ferrell, Barbra; Fluck, Juliane; Gama-Castro, Socorro; George, Nancy; Gkoutos, Georgios; Irin, Afroza K; Jensen, Lars J; Jimenez, Silvia; Jue, Toni R; Keseler, Ingrid; Madan, Sumit; Matos, Sérgio; McQuilton, Peter; Milacic, Marija; Mort, Matthew; Natarajan, Jeyakumar; Pafilis, Evangelos; Pereira, Emiliano; Rao, Shruti; Rinaldi, Fabio; Rothfels, Karen; Salgado, David; Silva, Raquel M; Singh, Onkar; Stefancsik, Raymund; Su, Chu-Hsien; Subramani, Suresh; Tadepally, Hamsa D; Tsaprouni, Loukia; Vasilevsky, Nicole; Wang, Xiaodong; Chatr-Aryamontri, Andrew; Laulederkind, Stanley J F; Matis-Mitchell, Sherri; McEntyre, Johanna; Orchard, Sandra; Pundir, Sangya; Rodriguez-Esteban, Raul; Van Auken, Kimberly; Lu, Zhiyong; Schaeffer, Mary; Wu, Cathy H; Hirschman, Lynette; Arighi, Cecilia NDatabase : the journal of biological databases and curation.2016;27589961
Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.Deutsch, Eric W; Sun, Zhi; Campbell, David S; Binz, Pierre-Alain; Farrah, Terry; Shteynberg, David; Mendoza, Luis; Omenn, Gilbert S; Moritz, Robert LJournal of proteome research.2016 Nov 04;27577934
Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress.Papale, Ligia A; Li, Sisi; Madrid, Andy; Zhang, Qi; Chen, Li; Chopra, Pankaj; Jin, Peng; Kele?, Sündüz; Alisch, Reid SNeurobiology of disease.2016 Dec;27576189
Making the cut: improved ranking and selection for large-scale inference.Henderson, Nicholas C; Newton, Michael AJournal of the Royal Statistical Society. Series B, Statistical methodology.2016 Sep;27570475
Structural asymmetries of the human cerebellum in relation to cerebral cortical asymmetries and handedness.Kavaklioglu, Tulya; Guadalupe, Tulio; Zwiers, Marcel; Marquand, Andre F; Onnink, Marten; Shumskaya, Elena; Brunner, Han; Fernandez, Guillen; Fisher, Simon E; Francks, ClydeBrain structure & function.2016 Aug 26;27566607
Making a meaningful impact: modelling simultaneous frictional collisions in spatial multibody systems.Uchida, Thomas K; Sherman, Michael A; Delp, Scott LProceedings. Mathematical, physical, and engineering sciences.2015 May 08;27547093
Predicting Social Anxiety Treatment Outcome Based on Therapeutic Email Conversations.Hoogendoorn, Mark; Berger, Thomas; Schulz, Ava; Stolz, Timo; Szolovits, PeterIEEE journal of biomedical and health informatics.2017 Sep;27542187
Integration of 60,000 exomes and ACMG guidelines question the role of Catecholaminergic Polymorphic Ventricular Tachycardia-associated variants.Paludan-Müller, C; Ahlberg, G; Ghouse, J; Herfelt, C; Svendsen, J H; Haunsø, S; Kanters, J K; Olesen, M SClinical genetics.2017 01;27538377
Analysis of protein-coding genetic variation in 60,706 humans.Lek, Monkol; Karczewski, Konrad J; Minikel, Eric V; Samocha, Kaitlin E; Banks, Eric; Fennell, Timothy; O'Donnell-Luria, Anne H; Ware, James S; Hill, Andrew J; Cummings, Beryl B; Tukiainen, Taru; Birnbaum, Daniel P; Kosmicki, Jack A; Duncan, Laramie E; Estrada, Karol; Zhao, Fengmei; Zou, James; Pierce-Hoffman, Emma; Berghout, Joanne; Cooper, David N; Deflaux, Nicole; DePristo, Mark; Do, Ron; Flannick, Jason; Fromer, Menachem; Gauthier, Laura; Goldstein, Jackie; Gupta, Namrata; Howrigan, Daniel; Kiezun, Adam; Kurki, Mitja I; Moonshine, Ami Levy; Natarajan, Pradeep; Orozco, Lorena; Peloso, Gina M; Poplin, Ryan; Rivas, Manuel A; Ruano-Rubio, Valentin; Rose, Samuel A; Ruderfer, Douglas M; Shakir, Khalid; Stenson, Peter D; Stevens, Christine; Thomas, Brett P; Tiao, Grace; Tusie-Luna, Maria T; Weisburd, Ben; Won, Hong-Hee; Yu, Dongmei; Altshuler, David M; Ardissino, Diego; Boehnke, Michael; Danesh, John; Donnelly, Stacey; Elosua, Roberto; Florez, Jose C; Gabriel, Stacey B; Getz, Gad; Glatt, Stephen J; Hultman, Christina M; Kathiresan, Sekar; Laakso, Markku; McCarroll, Steven; McCarthy, Mark I; McGovern, Dermot; McPherson, Ruth; Neale, Benjamin M; Palotie, Aarno; Purcell, Shaun M; Saleheen, Danish; Scharf, Jeremiah M; Sklar, Pamela; Sullivan, Patrick F; Tuomilehto, Jaakko; Tsuang, Ming T; Watkins, Hugh C; Wilson, James G; Daly, Mark J; MacArthur, Daniel G; Exome Aggregation ConsortiumNature.2016 08 18;27535533
Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm.Chu, Li-Fang; Leng, Ning; Zhang, Jue; Hou, Zhonggang; Mamott, Daniel; Vereide, David T; Choi, Jeea; Kendziorski, Christina; Stewart, Ron; Thomson, James AGenome biology.2016 Aug 17;27534536
Patterns of genic intolerance of rare copy number variation in 59,898 human exomes.Ruderfer, Douglas M; Hamamsy, Tymor; Lek, Monkol; Karczewski, Konrad J; Kavanagh, David; Samocha, Kaitlin E; Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel G; Fromer, Menachem; Purcell, Shaun MNature genetics.2016 Oct;27533299
Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples.Walsh, Roddy; Thomson, Kate L; Ware, James S; Funke, Birgit H; Woodley, Jessica; McGuire, Karen J; Mazzarotto, Francesco; Blair, Edward; Seller, Anneke; Taylor, Jenny C; Minikel, Eric V; Exome Aggregation Consortium; MacArthur, Daniel G; Farrall, Martin; Cook, Stuart A; Watkins, HughGenetics in medicine : official journal of the American College of Medical Genetics.2017 02;27532257
Statistical detection of geographic clusters of resistant Escherichia coli in a regional network with WHONET and SaTScan.Park, Rachel; O'Brien, Thomas F; Huang, Susan S; Baker, Meghan A; Yokoe, Deborah S; Kulldorff, Martin; Barrett, Craig; Swift, Jamie; Stelling, John; Centers for Disease Control and Prevention Epicenters ProgramExpert review of anti-infective therapy.2016 11;27530311
A comprehensive and scalable database search system for metaproteomics.Chatterjee, Sandip; Stupp, Gregory S; Park, Sung Kyu Robin; Ducom, Jean-Christophe; Yates 3rd, John R; Su, Andrew I; Wolan, Dennis WBMC genomics.2016 08 16;27528457
Leveraging Citizen Science and Information Technology for Population Physical Activity Promotion.King, Abby C; Winter, Sandra J; Sheats, Jylana L; Rosas, Lisa G; Buman, Matthew P; Salvo, Deborah; Rodriguez, Nicole M; Seguin, Rebecca A; Moran, Mika; Garber, Randi; Broderick, Bonnie; Zieff, Susan G; Sarmiento, Olga Lucia; Gonzalez, Silvia A; Banchoff, Ann; Dommarco, Juan RiveraTranslational journal of the American College of Sports Medicine.2016 May 15;27525309
Blockwise Human Brain Network Visual Comparison Using NodeTrix Representation.Yang, Xinsong; Shi, Lei; Daianu, Madelaine; Tong, Hanghang; Liu, Qingsong; Thompson, PaulIEEE transactions on visualization and computer graphics.2017 Jan;27514058
APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE.Zhang, Jie; Stonnington, Cynthia; Li, Qingyang; Shi, Jie; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Thompson, Paul M; Ye, Jieping; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2016 Apr;27499829
MORPHOMETRIC ANALYSIS OF HIPPOCAMPUS AND LATERAL VENTRICLE REVEALS REGIONAL DIFFERENCE BETWEEN COGNITIVELY STABLE AND DECLINING PERSONS.Zhang, Wen; Shi, Jie; Stonnington, Cynthia; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, YalinProceedings. IEEE International Symposium on Biomedical Imaging.2016 Apr;27499828
Apolipoprotein A5 fifteen years anniversary: Lessons from genetic epidemiology.Hubacek, Jaroslav AGene.2016 Oct 30;27496343
Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations.Dinov, Ivo D; Heavner, Ben; Tang, Ming; Glusman, Gustavo; Chard, Kyle; Darcy, Mike; Madduri, Ravi; Pa, Judy; Spino, Cathie; Kesselman, Carl; Foster, Ian; Deutsch, Eric W; Price, Nathan D; Van Horn, John D; Ames, Joseph; Clark, Kristi; Hood, Leroy; Hampstead, Benjamin M; Dauer, William; Toga, Arthur WPloS one.2016;27494614
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.Deutsch, Eric W; Overall, Christopher M; Van Eyk, Jennifer E; Baker, Mark S; Paik, Young-Ki; Weintraub, Susan T; Lane, Lydie; Martens, Lennart; Vandenbrouck, Yves; Kusebauch, Ulrike; Hancock, William S; Hermjakob, Henning; Aebersold, Ruedi; Moritz, Robert L; Omenn, Gilbert SJournal of proteome research.2016 Nov 04;27490519
Quantifying patterns of brain activity: Distinguishing unaffected siblings from participants with ADHD and healthy individuals.Wolfers, Thomas; van Rooij, Daan; Oosterlaan, Jaap; Heslenfeld, Dirk; Hartman, Catharina A; Hoekstra, Pieter J; Beckmann, Christian F; Franke, Barbara; Buitelaar, Jan K; Marquand, Andre FNeuroImage. Clinical.2016;27489770
Prioritizing individual genetic variants after kernel machine testing using variable selection.He, Qianchuan; Cai, Tianxi; Liu, Yang; Zhao, Ni; Harmon, Quaker E; Almli, Lynn M; Binder, Elisabeth B; Engel, Stephanie M; Ressler, Kerry J; Conneely, Karen N; Lin, Xihong; Wu, Michael CGenetic epidemiology.2016 Dec;27488097
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications.Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Beavis, Ronald C; Overall, Christopher M; Deutsch, Eric WJournal of proteome research.2016 Nov 04;27487407
KCNE4 and KCNE5: K(+) channel regulation and cardiac arrhythmogenesis.Abbott, Geoffrey WGene.2016 Nov 30;27484720
Connecting the Dots: From Big Data to Healthy Heart.Lau, Edward; Watson, Karol E; Ping, PeipeiCirculation.2016 Aug 02;27481999
Efficient Queries of Stand-off Annotations for Natural Language Processing on Electronic Medical Records.Luo, Yuan; Szolovits, PeterBiomedical informatics insights.2016;27478379
Heterochronicity of white matter development and aging explains regional patient control differences in schizophrenia.Kochunov, Peter; Ganjgahi, Habib; Winkler, Anderson; Kelly, Sinead; Shukla, Dinesh K; Du, Xiaoming; Jahanshad, Neda; Rowland, Laura; Sampath, Hemalatha; Patel, Binish; O'Donnell, Patricio; Xie, Zhiyong; Paciga, Sara A; Schubert, Christian R; Chen, Jian; Zhang, Guohao; Thompson, Paul M; Nichols, Thomas E; Hong, L ElliotHuman brain mapping.2016 Dec;27477775
Brain structural changes following adaptive cognitive training assessed by Tensor-Based Morphometry (TBM).Colom, Roberto; Hua, Xue; Martínez, Kenia; Burgaleta, Miguel; Román, Francisco J; Gunter, Jeffrey L; Carmona, Susanna; Jaeggi, Susanne M; Thompson, Paul MNeuropsychologia.2016 Oct;27477628
Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability.Jiang, Peng; Nelson, Jeffrey D; Leng, Ning; Collins, Michael; Swanson, Scott; Dewey, Colin N; Thomson, James A; Stewart, RonDevelopmental biology.2017 06 15;27475628
Comparison of genomic data via statistical distribution.Amiri, Saeid; Dinov, Ivo DJournal of theoretical biology.2016 Oct 21;27460589
Environment-Wide Association Study of Blood Pressure in the National Health and Nutrition Examination Survey (1999-2012).McGinnis, Denise P; Brownstein, John S; Patel, Chirag JScientific reports.2016 Jul 26;27457472
Correction: Effects of Three Motivationally Targeted Mobile Device Applications on Initial Physical Activity and Sedentary Behavior Change in Midlife and Older Adults: A Randomized Trial.PLOS ONE StaffPloS one.2016;27442244
On longitudinal prediction with time-to-event outcome: Comparison of modeling options.Maziarz, Marlena; Heagerty, Patrick; Cai, Tianxi; Zheng, YingyeBiometrics.2017 Mar;27438160
Volumetric and shape analyses of subcortical structures in United States service members with mild traumatic brain injury.Tate, David F; Wade, Benjamin S C; Velez, Carmen S; Drennon, Ann Marie; Bolzenius, Jacob; Gutman, Boris A; Thompson, Paul M; Lewis, Jeffrey D; Wilde, Elisabeth A; Bigler, Erin D; Shenton, Martha E; Ritter, John L; York, Gerald EJournal of neurology.2016 Oct;27435967
Crowdsourcing biomedical research: leveraging communities as innovation engines.Saez-Rodriguez, Julio; Costello, James C; Friend, Stephen H; Kellen, Michael R; Mangravite, Lara; Meyer, Pablo; Norman, Thea; Stolovitzky, GustavoNature reviews. Genetics.2016 07 15;27418159
Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq.Liu, Peng; Sanalkumar, Rajendran; Bresnick, Emery H; Kele?, Sündüz; Dewey, Colin NGenome research.2016 08;27405803
Network Lasso: Clustering and Optimization in Large Graphs.Hallac, David; Leskovec, Jure; Boyd, StephenKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;27398260
Full-Body Musculoskeletal Model for Muscle-Driven Simulation of Human Gait.Rajagopal, Apoorva; Dembia, Christopher L; DeMers, Matthew S; Delp, Denny D; Hicks, Jennifer L; Delp, Scott LIEEE transactions on bio-medical engineering.2016 10;27392337
Interplay between stress response genes associated with attention-deficit hyperactivity disorder and brain volume.van der Meer, D; Hoekstra, P J; Bralten, J; van Donkelaar, M; Heslenfeld, D J; Oosterlaan, J; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C AGenes, brain, and behavior.2016 09;27391809
BigDebug: Debugging Primitives for Interactive Big Data Processing in Spark.Gulzar, Muhammad Ali; Interlandi, Matteo; Yoo, Seunghyun; Tetali, Sai Deep; Condie, Tyson; Millstein, Todd; Kim, MiryungProceedings - International Conference on Software Engineering. International Conference on Software Engineering.2016 May;27390389
Using automatically extracted information from mammography reports for decision-support.Bozkurt, Selen; Gimenez, Francisco; Burnside, Elizabeth S; Gulkesen, Kemal H; Rubin, Daniel LJournal of biomedical informatics.2016 Aug;27388877
Higher-order organization of complex networks.Benson, Austin R; Gleich, David F; Leskovec, JureScience (New York, N.Y.).2016 Jul 08;27387949
Genetic Dissection of Cardiac Remodeling in an Isoproterenol-Induced Heart Failure Mouse Model.Wang, Jessica Jen-Chu; Rau, Christoph; Avetisyan, Rozeta; Ren, Shuxun; Romay, Milagros C; Stolin, Gabriel; Gong, Ke Wei; Wang, Yibin; Lusis, Aldons JPLoS genetics.2016 07;27385019
Mapping Murine Corneal Neovascularization and Weight Loss Virulence Determinants in the Herpes Simplex Virus 1 Genome and the Detection of an Epistatic Interaction between the UL and IRS/US Regions.Lee, Kyubin; Kolb, Aaron W; Larsen, Inna; Craven, Mark; Brandt, Curtis RJournal of virology.2016 09 15;27384650
Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.Haeussler, Maximilian; Schönig, Kai; Eckert, Hélène; Eschstruth, Alexis; Mianné, Joffrey; Renaud, Jean-Baptiste; Schneider-Maunoury, Sylvie; Shkumatava, Alena; Teboul, Lydia; Kent, Jim; Joly, Jean-Stephane; Concordet, Jean-PaulGenome biology.2016 Jul 05;27380939
The C677T variant in MTHFR modulates associations between blood-based and cerebrospinal fluid biomarkers of neurodegeneration.Roussotte, Florence F; Narr, Katherine L; Small, Gary W; Thompson, Paul M; Alzheimer?s Disease Neuroimaging InitiativeNeuroreport.2016 Aug 17;27380243
Using the laws of thermodynamics to understand how matrix metalloproteinases coordinate the myocardial response to injury.Iyer, Rugmani Padmanabhan; Jung, Mira; Lindsey, Merry LMetalloproteinases in medicine.2015;27376092
CVXPY: A Python-Embedded Modeling Language for Convex Optimization.Diamond, Steven; Boyd, StephenJournal of machine learning research : JMLR.2016 Apr;27375369
Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems.Lam, Maggie P Y; Venkatraman, Vidya; Xing, Yi; Lau, Edward; Cao, Quan; Ng, Dominic C M; Su, Andrew I; Ge, Junbo; Van Eyk, Jennifer E; Ping, PeipeiJournal of proteome research.2016 Nov 04;27356587
Effects of Three Motivationally Targeted Mobile Device Applications on Initial Physical Activity and Sedentary Behavior Change in Midlife and Older Adults: A Randomized Trial.King, Abby C; Hekler, Eric B; Grieco, Lauren A; Winter, Sandra J; Sheats, Jylana L; Buman, Matthew P; Banerjee, Banny; Robinson, Thomas N; Cirimele, JessePloS one.2016;27352250
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis.Noren, David P; Long, Byron L; Norel, Raquel; Rrhissorrakrai, Kahn; Hess, Kenneth; Hu, Chenyue Wendy; Bisberg, Alex J; Schultz, Andre; Engquist, Erik; Liu, Li; Lin, Xihui; Chen, Gregory M; Xie, Honglei; Hunter, Geoffrey A M; Boutros, Paul C; Stepanov, Oleg; DREAM 9 AML-OPC Consortium; Norman, Thea; Friend, Stephen H; Stolovitzky, Gustavo; Kornblau, Steven; Qutub, Amina APLoS computational biology.2016 06;27351836
Disentangling the autism-anxiety overlap: fMRI of reward processing in a community-based longitudinal study.Mikita, N; Simonoff, E; Pine, D S; Goodman, R; Artiges, E; Banaschewski, T; Bokde, A L; Bromberg, U; Büchel, C; Cattrell, A; Conrod, P J; Desrivières, S; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Heinz, A; Ittermann, B; Jurk, S; Martinot, J L; Paillère Martinot, M L; Nees, F; Papadopoulos Orfanos, D; Paus, T; Poustka, L; Smolka, M N; Walter, H; Whelan, R; Schumann, G; Stringaris, ATranslational psychiatry.2016 06 28;27351599
Identification of Gene Loci That Overlap Between Schizophrenia and Educational Attainment.Le Hellard, Stéphanie; Wang, Yunpeng; Witoelar, Aree; Zuber, Verena; Bettella, Francesco; Hugdahl, Kenneth; Espeseth, Thomas; Steen, Vidar M; Melle, Ingrid; Desikan, Rahul; Schork, Andrew J; Thompson, Wesley K; Dale, Anders M; Djurovic, Srdjan; Andreassen, Ole A; Schizophrenia Working Group of the Psychiatric Genomics ConsortiumSchizophrenia bulletin.2017 05 01;27338279
A Utility/Cost Analysis of Breast Cancer Risk Prediction Algorithms.Abbey, Craig K; Wu, Yirong; Burnside, Elizabeth S; Wunderlich, Adam; Samuelson, Frank W; Boone, John MProceedings of SPIE--the International Society for Optical Engineering.2016 Feb 27;27335532
Taming the Wild: A Unified Analysis of Hogwild!-Style Algorithms.De Sa, Christopher; Zhang, Ce; Olukotun, Kunle; Ré, ChristopherAdvances in neural information processing systems.2015 Dec;27330264
Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals.Chikina, Maria; Robinson, Joseph D; Clark, Nathan LMolecular biology and evolution.2016 Sep;27329977
Caffe con Troll: Shallow Ideas to Speed Up Deep Learning.Hadjis, Stefan; Abuzaid, Firas; Zhang, Ce; Ré, ChristopherProceedings of the Fourth Workshop on Data analytics at sCale (DanaC 2015) : May 31st, 2015, Melbourne, Australia. Workshop on Data Analytics in the Cloud (4th : 2015 : Melbourne, Vic.).2015 May-Jun;27314106
What Is Going on Inside the Arrows? Discovering the Hidden Springs in Causal Models.Murray-Watters, Alexander; Glymour, ClarkPhilosophy of science.2015 Oct;27313331
PRKCE gene encoding protein kinase C-epsilon-Dual roles at sarcomeres and mitochondria in cardiomyocytes.Scruggs, Sarah B; Wang, Ding; Ping, PeipeiGene.2016 Sep 15;27312950
DeepMeSH: deep semantic representation for improving large-scale MeSH indexing.Peng, Shengwen; You, Ronghui; Wang, Hongning; Zhai, Chengxiang; Mamitsuka, Hiroshi; Zhu, ShanfengBioinformatics (Oxford, England).2016 06 15;27307646
Using genomic annotations increases statistical power to detect eGenes.Duong, Dat; Zou, Jennifer; Hormozdiari, Farhad; Sul, Jae Hoon; Ernst, Jason; Han, Buhm; Eskin, EleazarBioinformatics (Oxford, England).2016 Jun 15;27307612
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.Bravo, Àlex; Li, Tong Shu; Su, Andrew I; Good, Benjamin M; Furlong, Laura IDatabase : the journal of biological databases and curation.2016;27307137
Integrated analysis of gray and white matter alterations in attention-deficit/hyperactivity disorder.Francx, Winke; Llera, Alberto; Mennes, Maarten; Zwiers, Marcel P; Faraone, Stephen V; Oosterlaan, Jaap; Heslenfeld, Dirk; Hoekstra, Pieter J; Hartman, Catharina A; Franke, Barbara; Buitelaar, Jan K; Beckmann, Christian FNeuroImage. Clinical.2016;27298764
Learning mixed graphical models with separate sparsity parameters and stability-based model selection.Sedgewick, Andrew J; Shi, Ivy; Donovan, Rory M; Benos, Panayiotis VBMC bioinformatics.2016 Jun 06;27294886
Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium.Salomonis, Nathan; Dexheimer, Phillip J; Omberg, Larsson; Schroll, Robin; Bush, Stacy; Huo, Jeffrey; Schriml, Lynn; Ho Sui, Shannan; Keddache, Mehdi; Mayhew, Christopher; Shanmukhappa, Shiva Kumar; Wells, James; Daily, Kenneth; Hubler, Shane; Wang, Yuliang; Zambidis, Elias; Margolin, Adam; Hide, Winston; Hatzopoulos, Antonis K; Malik, Punam; Cancelas, Jose A; Aronow, Bruce J; Lutzko, CarolynStem cell reports.;27293150
Imputing Phenotypes for Genome-wide Association Studies.Hormozdiari, Farhad; Kang, Eun Yong; Bilow, Michael; Ben-David, Eyal; Vulpe, Chris; McLachlan, Stela; Lusis, Aldons J; Han, Buhm; Eskin, EleazarAmerican journal of human genetics.2016 Jul 7;27292110
MULTI-RESOLUTION STATISTICAL ANALYSIS ON GRAPH STRUCTURED DATA IN NEUROIMAGING.Kim, Won Hwa; Singh, Vikas; Chung, Moo K; Adluru, Nagesh; Bendlin, Barbara B; Johnson, Sterling CProceedings. IEEE International Symposium on Biomedical Imaging.2015 Apr;27284387
Rapidly Mixing Gibbs Sampling for a Class of Factor Graphs Using Hierarchy Width.De Sa, Christopher; Zhang, Ce; Olukotun, Kunle; Ré, ChristopherAdvances in neural information processing systems.2015 Dec;27279724
Discriminatory power of common genetic variants in personalized breast cancer diagnosis.Wu, Yirong; Abbey, Craig K; Liu, Jie; Ong, Irene; Peissig, Peggy; Onitilo, Adedayo A; Fan, Jun; Yuan, Ming; Burnside, Elizabeth SProceedings of SPIE--the International Society for Optical Engineering.2016 Feb 27;27279675
A Database Framework for Classifier Engineering.Kimelfeld, Benny; Ré, ChristopherCEUR workshop proceedings.2015 May;27274719
Opinion: Big data biomedicine offers big higher education opportunities.Van Horn, John DarrellProceedings of the National Academy of Sciences of the United States of America.2016 Jun 7;27274038
Kernel machine score test for pathway analysis in the presence of semi-competing risks.Neykov, Matey; Hejblum, Boris P; Sinnott, Jennifer AStatistical methods in medical research.2016 Jun 02;27255336
MET network in PubMed: a text-mined network visualization and curation system.Dai, Hong-Jie; Su, Chu-Hsien; Lai, Po-Ting; Huang, Ming-Siang; Jonnagaddala, Jitendra; Rose Jue, Toni; Rao, Shruti; Chou, Hui-Jou; Milacic, Marija; Singh, Onkar; Syed-Abdul, Shabbir; Hsu, Wen-LianDatabase : the journal of biological databases and curation.2016;27242035
Knowledge gaps to understanding cardiac macrophage polarization following myocardial infarction.Lindsey, Merry L; Saucerman, Jeffrey J; DeLeon-Pennell, Kristine YBiochimica et biophysica acta.2016 Dec;27240543
Robust Multi-Network Clustering via Joint Cross-Domain Cluster Alignment.Liu, Rui; Cheng, Wei; Tong, Hanghang; Wang, Wei; Zhang, XiangProceedings. IEEE International Conference on Data Mining.2015 Nov;27239167
A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions.Fotuhi Siahpirani, Alireza; Ay, Ferhat; Roy, SushmitaGenome biology.2016 May 27;27233632
ApoE ?4 Is Associated With Cognition, Brain Integrity, and Atrophy in HIV Over Age 60.Wendelken, Lauren A; Jahanshad, Neda; Rosen, Howard J; Busovaca, Edgar; Allen, Isabel; Coppola, Giovanni; Adams, Collin; Rankin, Katherine P; Milanini, Benedetta; Clifford, Katherine; Wojta, Kevin; Nir, Talia M; Gutman, Boris A; Thompson, Paul M; Valcour, VictorJournal of acquired immune deficiency syndromes (1999).2016 Dec 01;27228100
Developmentally Sensitive Interaction Effects of Genes and the Social Environment on Total and Subcortical Brain Volumes.Richards, Jennifer S; Arias Vásquez, Alejandro; Franke, Barbara; Hoekstra, Pieter J; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Buitelaar, Jan K; Hartman, Catharina APloS one.2016;27218681
Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging: Structural connectivity of the human brain.Li, Junning; Shi, Yonggang; Toga, Arthur WIEEE signal processing magazine.2016 May;27212872
Genome Editing with CRISPR-Cas9: Can It Get Any Better?Haeussler, Maximilian; Concordet, Jean-PaulJournal of genetics and genomics = Yi chuan xue bao.2016 May 20;27210042
MMP-9 signaling in the left ventricle following myocardial infarction.Iyer, Rugmani Padmanabhan; Jung, Mira; Lindsey, Merry LAmerican journal of physiology. Heart and circulatory physiology.2016 Jul 01;27208160
Reactome from a WikiPathways Perspective.Bohler, Anwesha; Wu, Guanming; Kutmon, Martina; Pradhana, Leontius Adhika; Coort, Susan L; Hanspers, Kristina; Haw, Robin; Pico, Alexander R; Evelo, Chris TPLoS computational biology.2016 05;27203685
A comprehensive tractography study of patients with bipolar disorder and their unaffected siblings.Sprooten, Emma; Barrett, Jennifer; McKay, D Reese; Knowles, Emma E; Mathias, Samuel R; Winkler, Anderson M; Brumbaugh, Margaret S; Landau, Stefanie; Cyr, Lindsay; Kochunov, Peter; Glahn, David CHuman brain mapping.;27198848
Causal discovery and inference: concepts and recent methodological advances.Spirtes, Peter; Zhang, KunApplied informatics.2016;27195202
Attention-deficit/hyperactivity disorder.Faraone, Stephen V; Asherson, Philip; Banaschewski, Tobias; Biederman, Joseph; Buitelaar, Jan K; Ramos-Quiroga, Josep Antoni; Rohde, Luis Augusto; Sonuga-Barke, Edmund J S; Tannock, Rosemary; Franke, BarbaraNature reviews. Disease primers.2015 08 06;27189265
Rate-Agnostic (Causal) Structure Learning.Plis, Sergey; Danks, David; Freeman, Cynthia; Calhoun, VinceAdvances in neural information processing systems.2015 Dec;27182188
Pallidum and lateral ventricle volume enlargement in autism spectrum disorder.Turner, Andia H; Greenspan, Kiefer S; van Erp, Theo G MPsychiatry research. Neuroimaging.2016 Jun 30;27179315
Markov Boundary Discovery with Ridge Regularized Linear Models.Strobl, Eric V; Visweswaran, ShyamJournal of causal inference.2016 Mar;27170915
Testing differential susceptibility: Plasticity genes, the social environment, and their interplay in adolescent response inhibition.Richards, Jennifer S; Arias Vásquez, Alejandro; van Rooij, Daan; van der Meer, Dennis; Franke, Barbara; Hoekstra, Pieter J; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Hartman, Catharina A; Buitelaar, Jan KThe world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry.2017 Jun;27170266
Probability Distributome: A Web Computational Infrastructure for Exploring the Properties, Interrelations, and Applications of Probability Distributions.Dinov, Ivo D; Siegrist, Kyle; Pearl, Dennis K; Kalinin, Alexandr; Christou, NicolasComputational statistics.2016 Jun;27158191
High-performance web services for querying gene and variant annotation.Xin, Jiwen; Mark, Adam; Afrasiabi, Cyrus; Tsueng, Ginger; Juchler, Moritz; Gopal, Nikhil; Stupp, Gregory S; Putman, Timothy E; Ainscough, Benjamin J; Griffith, Obi L; Torkamani, Ali; Whetzel, Patricia L; Mungall, Christopher J; Mooney, Sean D; Su, Andrew I; Wu, ChunleiGenome biology.2016 May 06;27154141
Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.Gangavarapu, Karthik; Babji, Vyshakh; Meißner, Tobias; Su, Andrew I; Good, Benjamin MBioinformatics (Oxford, England).2016 Jul 01;27153723
Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks.Blatti, Charles; Sinha, SaurabhBioinformatics (Oxford, England).2016 Jul 15;27153592
Facilitating a culture of responsible and effective sharing of cancer genome data.Siu, Lillian L; Lawler, Mark; Haussler, David; Knoppers, Bartha Maria; Lewin, Jeremy; Vis, Daniel J; Liao, Rachel G; Andre, Fabrice; Banks, Ian; Barrett, J Carl; Caldas, Carlos; Camargo, Anamaria Aranha; Fitzgerald, Rebecca C; Mao, Mao; Mattison, John E; Pao, William; Sellers, William R; Sullivan, Patrick; Teh, Bin Tean; Ward, Robyn L; ZenKlusen, Jean Claude; Sawyers, Charles L; Voest, Emile ENature medicine.2016 05 05;27149219
An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem.Lu, Songjian; Mandava, Gunasheil; Yan, Gaibo; Lu, XinghuaAlgorithms for molecular biology : AMB.2016;27148394
MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays.Li, Hui; Zhu, Yitan; Burnside, Elizabeth S; Drukker, Karen; Hoadley, Katherine A; Fan, Cheng; Conzen, Suzanne D; Whitman, Gary J; Sutton, Elizabeth J; Net, Jose M; Ganott, Marie; Huang, Erich; Morris, Elizabeth A; Perou, Charles M; Ji, Yuan; Giger, Maryellen LRadiology.2016 Nov;27144536
Mindtagger: A Demonstration of Data Labeling in Knowledge Base Construction.Shin, Jaeho; Ré, Christopher; Cafarella, MichaelProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;27144082
Incremental Knowledge Base Construction Using DeepDive.Shin, Jaeho; Wu, Sen; Wang, Feiran; De Sa, Christopher; Zhang, Ce; Ré, ChristopherProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Jul;27144081
Cortical abnormalities in adults and adolescents with major depression based on brain scans from 20 cohorts worldwide in the ENIGMA Major Depressive Disorder Working Group.Schmaal, L; Hibar, D P; Sämann, P G; Hall, G B; Baune, B T; Jahanshad, N; Cheung, J W; van Erp, T G M; Bos, D; Ikram, M A; Vernooij, M W; Niessen, W J; Tiemeier, H; Hofman, A; Wittfeld, K; Grabe, H J; Janowitz, D; Bülow, R; Selonke, M; Völzke, H; Grotegerd, D; Dannlowski, U; Arolt, V; Opel, N; Heindel, W; Kugel, H; Hoehn, D; Czisch, M; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Wright, M J; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Martin, N G; Gillespie, N A; Goya-Maldonado, R; Gruber, O; Krämer, B; Hatton, S N; Lagopoulos, J; Hickie, I B; Frodl, T; Carballedo, A; Frey, E M; van Velzen, L S; Penninx, B W J H; van Tol, M-J; van der Wee, N J; Davey, C G; Harrison, B J; Mwangi, B; Cao, B; Soares, J C; Veer, I M; Walter, H; Schoepf, D; Zurowski, B; Konrad, C; Schramm, E; Normann, C; Schnell, K; Sacchet, M D; Gotlib, I H; MacQueen, G M; Godlewska, B R; Nickson, T; McIntosh, A M; Papmeyer, M; Whalley, H C; Hall, J; Sussmann, J E; Li, M; Walter, M; Aftanas, L; Brack, I; Bokhan, N A; Thompson, P M; Veltman, D JMolecular psychiatry.2017 Jun;27137745
Whole-Genome Sequencing of a Healthy Aging Cohort.Erikson, Galina A; Bodian, Dale L; Rueda, Manuel; Molparia, Bhuvan; Scott, Erick R; Scott-Van Zeeland, Ashley A; Topol, Sarah E; Wineinger, Nathan E; Niederhuber, John E; Topol, Eric J; Torkamani, AliCell.2016 May 05;27114037
Cognitive profiles and heritability estimates in the Old Order Amish.Kuehner, Ryan M; Kochunov, Peter; Nugent, Katie L; Jurius, Deanna E; Savransky, Anya; Gaudiot, Christopher; Bruce, Heather A; Gold, James; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L ElliotPsychiatric genetics.2016 08;27105171
Transformation Invariant Control of Voxel-Wise False Discovery Rate.Li, Junning; Shi, Yonggang; Toga, Arthur WIEEE transactions on medical imaging.2016 10;27101602
Developing a clinical utility framework to evaluate prediction models in radiogenomics.Wu, Yirong; Liu, Jie; Del Rio, Alejandro Munoz; Page, David C; Alagoz, Oguzhan; Peissig, Peggy; Onitilo, Adedayo A; Burnside, Elizabeth SProceedings of SPIE--the International Society for Optical Engineering.2015 Feb 21;27095854
A crowdsourcing workflow for extracting chemical-induced disease relations from free text.Li, Tong Shu; Bravo, Àlex; Furlong, Laura I; Good, Benjamin M; Su, Andrew IDatabase : the journal of biological databases and curation.2016;27087308
Utilizing uncoded consultation notes from electronic medical records for predictive modeling of colorectal cancer.Hoogendoorn, Mark; Szolovits, Peter; Moons, Leon M G; Numans, Mattijs EArtificial intelligence in medicine.2016 May;27085847
A Projection free method for Generalized Eigenvalue Problem with a nonsmooth Regularizer.Hwang, Seong Jae; Collins, Maxwell D; Ravi, Sathya N; Ithapu, Vamsi K; Adluru, Nagesh; Johnson, Sterling C; Singh, VikasProceedings. IEEE International Conference on Computer Vision.2015 Dec;27081374
Ringo: Interactive Graph Analytics on Big-Memory Machines.Perez, Yonathan; Sosi?, Rok; Banerjee, Arijit; Puttagunta, Rohan; Raison, Martin; Shah, Pararth; Leskovec, JureProceedings. ACM-Sigmod International Conference on Management of Data.2015 May-Jun;27081215
Machine Reading for Extraction of Bacteria and Habitat Taxonomies.Kordjamshidi, Parisa; Massa, Wouter; Provoost, Thomas; Moens, Marie-FrancineBiomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference).2015 Jan;27077141
Donor Retention in Online Crowdfunding Communities: A Case Study of DonorsChoose.org.Althoff, Tim; Leskovec, JureProceedings of the ... International World-Wide Web Conference. International WWW Conference.2015 May;27077139
Mesochronal Structure Learning.Plis, Sergey; Danks, David; Yang, JianyuUncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence.2015 Jul 12;27076793
Ventral Striatum Connectivity During Reward Anticipation in Adolescent Smokers.Jollans, Lee; Zhipeng, Cao; Icke, Ilknur; Greene, Ciara; Kelly, Clare; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Whelan, RobertDevelopmental neuropsychology.2016 Jan-Mar;27074029
Effect of Electroconvulsive Therapy on Striatal Morphometry in Major Depressive Disorder.Wade, Benjamin S C; Joshi, Shantanu H; Njau, Stephanie; Leaver, Amber M; Vasavada, Megha; Woods, Roger P; Gutman, Boris A; Thompson, Paul M; Espinoza, Randall; Narr, Katherine LNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.2016 09;27067127
ExpertBayes: Automatically refining manually built Bayesian networks.Almeida, Ezilda; Ferreira, Pedro; Vinhoza, Tiago; Dutra, Inês; Li, Jingwei; Wu, Yirong; Burnside, ElizabethProceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications.2014 Dec;27066596
Influence of APOE Genotype on Hippocampal Atrophy over Time - An N=1925 Surface-Based ADNI Study.Li, Bolun; Shi, Jie; Gutman, Boris A; Baxter, Leslie C; Thompson, Paul M; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging InitiativePloS one.2016;27065111
Query-Based Outlier Detection in Heterogeneous Information Networks.Kuck, Jonathan; Zhuang, Honglei; Yan, Xifeng; Cam, Hasan; Han, JiaweiAdvances in database technology : proceedings. International Conference on Extending Database Technology.2015 Mar;27064397
Systematic correlation of environmental exposure and physiological and self-reported behaviour factors with leukocyte telomere length.Patel, Chirag J; Manrai, Arjun K; Corona, Erik; Kohane, Isaac SInternational journal of epidemiology.2016 Apr 8;27059547
Design and computational analysis of single-cell RNA-sequencing experiments.Bacher, Rhonda; Kendziorski, ChristinaGenome biology.2016 Apr 07;27052890
Adolescent behavioral and neural reward sensitivity: a test of the differential susceptibility theory.Richards, J S; Arias Vásquez, A; von Rhein, D; van der Meer, D; Franke, B; Hoekstra, P J; Heslenfeld, D J; Oosterlaan, J; Faraone, S V; Buitelaar, J K; Hartman, C ATranslational psychiatry.2016 Apr 05;27045841
Brainhack: a collaborative workshop for the open neuroscience community.Cameron Craddock, R; S Margulies, Daniel; Bellec, Pierre; Nolan Nichols, B; Alcauter, Sarael; A Barrios, Fernando; Burnod, Yves; J Cannistraci, Christopher; Cohen-Adad, Julien; De Leener, Benjamin; Dery, Sebastien; Downar, Jonathan; Dunlop, Katharine; R Franco, Alexandre; Seligman Froehlich, Caroline; J Gerber, Andrew; S Ghosh, Satrajit; J Grabowski, Thomas; Hill, Sean; Sólon Heinsfeld, Anibal; Matthew Hutchison, R; Kundu, Prantik; R Laird, Angela; Liew, Sook-Lei; J Lurie, Daniel; G McLaren, Donald; Meneguzzi, Felipe; Mennes, Maarten; Mesmoudi, Salma; O'Connor, David; H Pasaye, Erick; Peltier, Scott; Poline, Jean-Baptiste; Prasad, Gautam; Fraga Pereira, Ramon; Quirion, Pierre-Olivier; Rokem, Ariel; S Saad, Ziad; Shi, Yonggang; C Strother, Stephen; Toro, Roberto; Q Uddin, Lucina; D Van Horn, John; W Van Meter, John; C Welsh, Robert; Xu, TingGigaScience.2016;27042293
Interpolation on the manifold of K component GMMs.Kim, Hyunwoo J; Adluru, Nagesh; Banerjee, Monami; Vemuri, Baba C; Singh, VikasProceedings. IEEE International Conference on Computer Vision.2015 Dec;27042169
On Statistical Analysis of Neuroimages with Imperfect Registration.Kim, Won Hwa; Ravi, Sathya N; Johnson, Sterling C; Okonkwo, Ozioma C; Singh, VikasProceedings. IEEE International Conference on Computer Vision.2015 Dec;27042168
CIDER: Enabling Robustness-Power Tradeoffs on a Computational Eyeglass.Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Ganesan, Deepak; Marlin, Benjamin; Salthouse, ChristopherProceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking.2015 Sep;27042165
Multiple testing correction in linear mixed models.Joo, Jong Wha J; Hormozdiari, Farhad; Han, Buhm; Eskin, EleazarGenome biology.2016;27039378
KnowSim: A Document Similarity Measure on Structured Heterogeneous Information Networks.Wang, Chenguang; Song, Yangqiu; Li, Haoran; Zhang, Ming; Han, JiaweiProceedings. IEEE International Conference on Data Mining.2015 Nov;27034626
Mining Multi-Aspect Reflection of News Events in Twitter: Discovery, Linking and Presentation.Wang, Jingjing; Tong, Wenzhu; Yu, Hongkun; Li, Min; Ma, Xiuli; Cai, Haoyan; Hanratty, Tim; Han, JiaweiProceedings. IEEE International Conference on Data Mining.2015 Nov;27034625
Long-read sequence assembly of the gorilla genome.Gordon, David; Huddleston, John; Chaisson, Mark J P; Hill, Christopher M; Kronenberg, Zev N; Munson, Katherine M; Malig, Maika; Raja, Archana; Fiddes, Ian; Hillier, LaDeana W; Dunn, Christopher; Baker, Carl; Armstrong, Joel; Diekhans, Mark; Paten, Benedict; Shendure, Jay; Wilson, Richard K; Haussler, David; Chin, Chen-Shan; Eichler, Evan EScience (New York, N.Y.).2016 Apr 01;27034376
Autism spectrum disorder and attention-deficit/hyperactivity disorder in early childhood: A review of unique and shared characteristics and developmental antecedents.Visser, Janne C; Rommelse, Nanda N J; Greven, Corina U; Buitelaar, Jan KNeuroscience and biobehavioral reviews.2016 06;27026637
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.Putman, Tim E; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Wu, Chunlei; Su, Andrew I; Good, Benjamin MDatabase : the journal of biological databases and curation.2016;27022157
Efficient Learning of Continuous-Time Hidden Markov Models for Disease Progression.Liu, Yu-Ying; Li, Shuang; Li, Fuxin; Song, Le; Rehg, James MAdvances in neural information processing systems.2015;27019571
Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies.Rahmani, Elior; Zaitlen, Noah; Baran, Yael; Eng, Celeste; Hu, Donglei; Galanter, Joshua; Oh, Sam; Burchard, Esteban G; Eskin, Eleazar; Zou, James; Halperin, EranNature methods.2016 May;27018579
Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics.Lavallée-Adam, Mathieu; Yates 3rd, John RCurrent protocols in bioinformatics.2016 Mar 24;27010334
Heritability and genetic correlation between the cerebral cortex and associated white matter connections.Shen, Kai-Kai; Doré, Vincent; Rose, Stephen; Fripp, Jurgen; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Thompson, Paul M; Wright, Margaret J; Salvado, OlivierHuman brain mapping.;27006297
Pathway analysis in attention deficit hyperactivity disorder: An ensemble approach.Mooney, Michael A; McWeeney, Shannon K; Faraone, Stephen V; Hinney, Anke; Hebebrand, Johannes; IMAGE2 Consortium; German ADHD GWAS Group; Nigg, Joel T; Wilmot, BethAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.2016 Sep;27004716
Neural basis of reward anticipation and its genetic determinants.Jia, Tianye; Macare, Christine; Desrivières, Sylvane; Gonzalez, Dante A; Tao, Chenyang; Ji, Xiaoxi; Ruggeri, Barbara; Nees, Frauke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Dove, Rachel; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Lemaitre, Hervé; Martinot, Jean-Luc; Paus, Tomá?; Pausova, Zdenka; Poline, Jean-Baptiste; Rietschel, Marcella; Robbins, Trevor; Smolka, Michael N; Müller, Christian P; Feng, Jianfeng; Rothenfluh, Adrian; Flor, Herta; Schumann, Gunter; IMAGEN ConsortiumProceedings of the National Academy of Sciences of the United States of America.2016 Apr 05;27001827
Identifying predictive markers for personalized treatment selection.Shen, Yuanyuan; Cai, TianxiBiometrics.2016 Dec;26999054
A role for the bacterial GATC methylome in antibiotic stress survival.Cohen, Nadia R; Ross, Christian A; Jain, Saloni; Shapiro, Rebecca S; Gutierrez, Arnaud; Belenky, Peter; Li, Hu; Collins, James JNature genetics.2016 05;26998690
Volume and Value of Big Healthcare Data.Dinov, Ivo DJournal of medical statistics and informatics.2016;26998309
A history of breast cancer and older age allow risk stratification of mammographic BI-RADS 3 ratings in the diagnostic setting.Benndorf, Matthias; Wu, Yirong; Burnside, Elizabeth SClinical imaging.2016 Mar-Apr;26995570
Tensor factorization toward precision medicine.Luo, Yuan; Wang, Fei; Szolovits, PeterBriefings in bioinformatics.2017 05 01;26994614
Statistical Inference Models for Image Datasets with Systematic Variations.Kim, Won Hwa; Bendlin, Barbara B; Chung, Moo K; Johnson, Sterling C; Singh, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2015 Jun;26989336
Wikidata as a semantic framework for the Gene Wiki initiative.Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Mitraka, Elvira; Turner, Julia; Putman, Tim; Leong, Justin; Naik, Chinmay; Pavlidis, Paul; Schriml, Lynn; Good, Benjamin M; Su, Andrew IDatabase : the journal of biological databases and curation.2016;26989148
A large dataset of protein dynamics in the mammalian heart proteome.Lau, Edward; Cao, Quan; Ng, Dominic C M; Bleakley, Brian J; Dincer, T Umut; Bot, Brian M; Wang, Ding; Liem, David A; Lam, Maggie P Y; Ge, Junbo; Ping, PeipeiScientific data.2016;26977904
Manifold-valued Dirichlet Processes.Kim, Hyunwoo J; Xu, Jia; Vemuri, Baba C; Singh, VikasProceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning.2015 Jul;26973982
Gaze-enabled Egocentric Video Summarization via Constrained Submodular Maximization.Xut, Jia; Mukherjee, Lopamudra; Li, Yin; Warner, Jamieson; Rehg, James M; Singht, VikasProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2015 Jun;26973428
Delving into Egocentric Actions.Li, Yin; Ye, Zhefan; Rehg, James MProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.2015 Jun;26973427
The effect of increased genetic risk for Alzheimer's disease on hippocampal and amygdala volume.Lupton, Michelle K; Strike, Lachlan; Hansell, Narelle K; Wen, Wei; Mather, Karen A; Armstrong, Nicola J; Thalamuthu, Anbupalam; McMahon, Katie L; de Zubicaray, Greig I; Assareh, Amelia A; Simmons, Andrew; Proitsi, Petroula; Powell, John F; Montgomery, Grant W; Hibar, Derrek P; Westman, Eric; Tsolaki, Magda; Kloszewska, Iwona; Soininen, Hilkka; Mecocci, Patrizia; Velas, Bruno; Lovestone, Simon; Alzheimer's Disease Neuroimaging Initiative; Brodaty, Henry; Ames, David; Trollor, Julian N; Martin, Nicholas G; Thompson, Paul M; Sachdev, Perminder S; Wright, Margaret JNeurobiology of aging.2016 Apr;26973105
Calponin isoforms CNN1, CNN2 and CNN3: Regulators for actin cytoskeleton functions in smooth muscle and non-muscle cells.Liu, Rong; Jin, J-PGene.2016 Jul 01;26970176
Age, APOE and sex: Triad of risk of Alzheimer's disease.Riedel, Brandalyn C; Thompson, Paul M; Brinton, Roberta DiazThe Journal of steroid biochemistry and molecular biology.2016 Jun;26969397
Electrophysiological Endophenotypes for Schizophrenia.Owens, Emily M; Bachman, Peter; Glahn, David C; Bearden, Carrie EHarvard review of psychiatry.2016 Mar-Apr;26954597
Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution.Gasch, Audrey P; Hose, James; Newton, Michael A; Sardi, Maria; Yong, Mun; Wang, ZhishieLife.2016;26949252
Data publication with the structural biology data grid supports live analysis.Meyer, Peter A; Socias, Stephanie; Key, Jason; Ransey, Elizabeth; Tjon, Emily C; Buschiazzo, Alejandro; Lei, Ming; Botka, Chris; Withrow, James; Neau, David; Rajashankar, Kanagalaghatta; Anderson, Karen S; Baxter, Richard H; Blacklow, Stephen C; Boggon, Titus J; Bonvin, Alexandre M J J; Borek, Dominika; Brett, Tom J; Caflisch, Amedeo; Chang, Chung-I; Chazin, Walter J; Corbett, Kevin D; Cosgrove, Michael S; Crosson, Sean; Dhe-Paganon, Sirano; Di Cera, Enrico; Drennan, Catherine L; Eck, Michael J; Eichman, Brandt F; Fan, Qing R; Ferré-D'Amaré, Adrian R; Fromme, J Christopher; Garcia, K Christopher; Gaudet, Rachelle; Gong, Peng; Harrison, Stephen C; Heldwein, Ekaterina E; Jia, Zongchao; Keenan, Robert J; Kruse, Andrew C; Kvansakul, Marc; McLellan, Jason S; Modis, Yorgo; Nam, Yunsun; Otwinowski, Zbyszek; Pai, Emil F; Pereira, Pedro José Barbosa; Petosa, Carlo; Raman, C S; Rapoport, Tom A; Roll-Mecak, Antonina; Rosen, Michael K; Rudenko, Gabby; Schlessinger, Joseph; Schwartz, Thomas U; Shamoo, Yousif; Sondermann, Holger; Tao, Yizhi J; Tolia, Niraj H; Tsodikov, Oleg V; Westover, Kenneth D; Wu, Hao; Foster, Ian; Fraser, James S; Maia, Filipe R N C; Gonen, Tamir; Kirchhausen, Tom; Diederichs, Kay; Crosas, Mercè; Sliz, PiotrNature communications.2016 Mar 07;26947396
Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models.Sul, Jae Hoon; Bilow, Michael; Yang, Wen-Yun; Kostem, Emrah; Furlotte, Nick; He, Dan; Eskin, EleazarPLoS genetics.2016 Mar;26943367
Health and population effects of rare gene knockouts in adult humans with related parents.Narasimhan, Vagheesh M; Hunt, Karen A; Mason, Dan; Baker, Christopher L; Karczewski, Konrad J; Barnes, Michael R; Barnett, Anthony H; Bates, Chris; Bellary, Srikanth; Bockett, Nicholas A; Giorda, Kristina; Griffiths, Christopher J; Hemingway, Harry; Jia, Zhilong; Kelly, M Ann; Khawaja, Hajrah A; Lek, Monkol; McCarthy, Shane; McEachan, Rosie; O'Donnell-Luria, Anne; Paigen, Kenneth; Parisinos, Constantinos A; Sheridan, Eamonn; Southgate, Laura; Tee, Louise; Thomas, Mark; Xue, Yali; Schnall-Levin, Michael; Petkov, Petko M; Tyler-Smith, Chris; Maher, Eamonn R; Trembath, Richard C; MacArthur, Daniel G; Wright, John; Durbin, Richard; van Heel, David AScience (New York, N.Y.).2016 Apr 22;26940866
Enlarged striatal volume in adults with ADHD carrying the 9-6 haplotype of the dopamine transporter gene DAT1.Onnink, A Marten H; Franke, Barbara; van Hulzen, Kimm; Zwiers, Marcel P; Mostert, Jeanette C; Schene, Aart H; Heslenfeld, Dirk J; Oosterlaan, Jaap; Hoekstra, Pieter J; Hartman, Catharina A; Vasquez, Alejandro Arias; Kan, Cornelis C; Buitelaar, Jan; Hoogman, MartineJournal of neural transmission (Vienna, Austria : 1996).2016 Aug;26935821
Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running.Uchida, Thomas K; Hicks, Jennifer L; Dembia, Christopher L; Delp, Scott LPloS one.2016;26930416
Sharing big biomedical data.Toga, Arthur W; Dinov, Ivo DJournal of big data.2015;26929900
The Implicitome: A Resource for Rationalizing Gene-Disease Associations.Hettne, Kristina M; Thompson, Mark; van Haagen, Herman H H B M; van der Horst, Eelke; Kaliyaperumal, Rajaram; Mina, Eleni; Tatum, Zuotian; Laros, Jeroen F J; van Mulligen, Erik M; Schuemie, Martijn; Aten, Emmelien; Li, Tong Shu; Bruskiewich, Richard; Good, Benjamin M; Su, Andrew I; Kors, Jan A; den Dunnen, Johan; van Ommen, Gert-Jan B; Roos, Marco; 't Hoen, Peter A C; Mons, Barend; Schultes, Erik APloS one.2016;26919047
Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data.Dinov, Ivo DGigaScience.2016;26918190
Guidelines for the functional annotation of microRNAs using the Gene Ontology.Huntley, Rachael P; Sitnikov, Dmitry; Orlic-Milacic, Marija; Balakrishnan, Rama; D'Eustachio, Peter; Gillespie, Marc E; Howe, Doug; Kalea, Anastasia Z; Maegdefessel, Lars; Osumi-Sutherland, David; Petri, Victoria; Smith, Jennifer R; Van Auken, Kimberly; Wood, Valerie; Zampetaki, Anna; Mayr, Manuel; Lovering, Ruth CRNA (New York, N.Y.).2016 May;26917558
Estimation and testing for multiple regulation of multivariate mixed outcomes.Agniel, Denis; Liao, Katherine P; Cai, TianxiBiometrics.2016 Dec;26910481
Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis.Sweeney, Timothy E; Braviak, Lindsay; Tato, Cristina M; Khatri, PurveshThe Lancet. Respiratory medicine.2016 Mar;26907218
Response to Dr Fried & Dr Kievit, and Dr Malhi et al.Schmaal, L; Veltman, D J; van Erp, T G M; Sämann, P G; Frodl, T; Jahanshad, N; Loehrer, E; Vernooij, M W; Niessen, W J; Ikram, M A; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Hoehn, D; Czisch, M; Lagopoulos, J; Hatton, S N; Hickie, I B; Goya-Maldonado, R; Krämer, B; Gruber, O; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Wright, M J; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hall, G B; van Velzen, L S; van Tol, M-J; van der Wee, N J; Veer, I M; Walter, H; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; McIntosh, A M; Whalley, H C; Sussmann, J E; Godlewska, B R; Fischer, F H; Penninx, B W J H; Thompson, P M; Hibar, D PMolecular psychiatry.2016 06;26903270
The Use of Behavior Change Techniques and Theory in Technologies for Cardiovascular Disease Prevention and Treatment in Adults: A Comprehensive Review.Winter, Sandra J; Sheats, Jylana L; King, Abby CProgress in cardiovascular diseases.2016 May-Jun;26902519
Inferring causal molecular networks: empirical assessment through a community-based effort.Hill, Steven M; Heiser, Laura M; Cokelaer, Thomas; Unger, Michael; Nesser, Nicole K; Carlin, Daniel E; Zhang, Yang; Sokolov, Artem; Paull, Evan O; Wong, Chris K; Graim, Kiley; Bivol, Adrian; Wang, Haizhou; Zhu, Fan; Afsari, Bahman; Danilova, Ludmila V; Favorov, Alexander V; Lee, Wai Shing; Taylor, Dane; Hu, Chenyue W; Long, Byron L; Noren, David P; Bisberg, Alexander J; HPN-DREAM Consortium; Mills, Gordon B; Gray, Joe W; Kellen, Michael; Norman, Thea; Friend, Stephen; Qutub, Amina A; Fertig, Elana J; Guan, Yuanfang; Song, Mingzhou; Stuart, Joshua M; Spellman, Paul T; Koeppl, Heinz; Stolovitzky, Gustavo; Saez-Rodriguez, Julio; Mukherjee, SachNature methods.2016 Apr;26901648
DataSpread: Unifying Databases and Spreadsheets.Bendre, Mangesh; Sun, Bofan; Zhang, Ding; Zhou, Xinyan; Chang, Kevin ChenChuan; Parameswaran, AdityaProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;26900487
Barriers and Negative Nudges: Exploring Challenges in Food Journaling.Cordeiro, Felicia; Epstein, Daniel A; Thomaz, Edison; Bales, Elizabeth; Jagannathan, Arvind K; Abowd, Gregory D; Fogarty, JamesProceedings of the SIGCHI conference on human factors in computing systems. CHI Conference.2015 Apr;26894233
Early developmental gene enhancers affect subcortical volumes in the adult human brain.Becker, Martin; Guadalupe, Tulio; Franke, Barbara; Hibar, Derrek P; Renteria, Miguel E; Stein, Jason L; Thompson, Paul M; Francks, Clyde; Vernes, Sonja C; Fisher, Simon EHuman brain mapping.2016 May;26890892
Durable Disease Control with MEK Inhibition in a Patient with NRAS-mutated Atypical Chronic Myeloid Leukemia.Khanna, Vishesh; Pierce, Scott T; Dao, Kim-Hien T; Tognon, Cristina E; Hunt, David E; Junio, Brian; Tyner, Jeffrey W; Druker, Brian JCureus.2015 Dec 17;26870618
ksRepo: a generalized platform for computational drug repositioning.Brown, Adam S; Kong, Sek Won; Kohane, Isaac S; Patel, Chirag JBMC bioinformatics.2016 Feb 09;26860211
Subcortical volumetric abnormalities in bipolar disorder.Hibar, D P; Westlye, L T; van Erp, T G M; Rasmussen, J; Leonardo, C D; Faskowitz, J; Haukvik, U K; Hartberg, C B; Doan, N T; Agartz, I; Dale, A M; Gruber, O; Krämer, B; Trost, S; Liberg, B; Abé, C; Ekman, C J; Ingvar, M; Landén, M; Fears, S C; Freimer, N B; Bearden, C E; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes; Sprooten, E; Glahn, D C; Pearlson, G D; Emsell, L; Kenney, J; Scanlon, C; McDonald, C; Cannon, D M; Almeida, J; Versace, A; Caseras, X; Lawrence, N S; Phillips, M L; Dima, D; Delvecchio, G; Frangou, S; Satterthwaite, T D; Wolf, D; Houenou, J; Henry, C; Malt, U F; Bøen, E; Elvsåshagen, T; Young, A H; Lloyd, A J; Goodwin, G M; Mackay, C E; Bourne, C; Bilderbeck, A; Abramovic, L; Boks, M P; van Haren, N E M; Ophoff, R A; Kahn, R S; Bauer, M; Pfennig, A; Alda, M; Hajek, T; Mwangi, B; Soares, J C; Nickson, T; Dimitrova, R; Sussmann, J E; Hagenaars, S; Whalley, H C; McIntosh, A M; Thompson, P M; Andreassen, O AMolecular psychiatry.2016 Dec;26857596
Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept.Franke, Barbara; Stein, Jason L; Ripke, Stephan; Anttila, Verneri; Hibar, Derrek P; van Hulzen, Kimm J E; Arias-Vasquez, Alejandro; Smoller, Jordan W; Nichols, Thomas E; Neale, Michael C; McIntosh, Andrew M; Lee, Phil; McMahon, Francis J; Meyer-Lindenberg, Andreas; Mattheisen, Manuel; Andreassen, Ole A; Gruber, Oliver; Sachdev, Perminder S; Roiz-Santiañez, Roberto; Saykin, Andrew J; Ehrlich, Stefan; Mather, Karen A; Turner, Jessica A; Schwarz, Emanuel; Thalamuthu, Anbupalam; Shugart, Yin Yao; Ho, Yvonne Yw; Martin, Nicholas G; Wright, Margaret J; Schizophrenia Working Group of the Psychiatric Genomics Consortium; ENIGMA Consortium; O'Donovan, Michael C; Thompson, Paul M; Neale, Benjamin M; Medland, Sarah E; Sullivan, Patrick FNature neuroscience.2016 Mar;26854805
Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations.Luo, Yuan; Uzuner, Özlem; Szolovits, PeterBriefings in bioinformatics.2017 Jan;26851224
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.Putnam, Nicholas H; O'Connell, Brendan L; Stites, Jonathan C; Rice, Brandon J; Blanchette, Marco; Calef, Robert; Troll, Christopher J; Fields, Andrew; Hartley, Paul D; Sugnet, Charles W; Haussler, David; Rokhsar, Daniel S; Green, Richard EGenome research.2016 Mar;26848124
GenAp: a distributed SQL interface for genomic data.Kozanitis, Christos; Patterson, David ABMC bioinformatics.2016 Feb 04;26846841
Surpassing Humans and Computers with JellyBean: Crowd-Vision-Hybrid Counting Algorithms.Sarma, Akash Das; Jain, Ayush; Nandi, Arnab; Parameswaran, Aditya; Widom, JenniferProceedings of the ... AAAI Conference on Human Computation and Crowdsourcing.2015 Nov;26844304
Smart Drill-Down: A New Data Exploration Operator.Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, AdityaProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;26844008
Collaborative Data Analytics with DataHub.Bhardwaj, Anant; Karger, David; Subramanyam, Harihar; Deshpande, Amol; Madden, Sam; Wu, Eugene; Elmore, Aaron; Parameswaran, Aditya; Zhang, RebeccaProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Aug;26844007
Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data.Guo, Wentian; Li, Hui; Zhu, Yitan; Lan, Li; Yang, Shengjie; Drukker, Karen; Morris, Elizabeth; Burnside, Elizabeth; Whitman, Gary; Giger, Maryellen L; Ji, Yuan; Tcga Breast Phenotype Research GroupJournal of medical imaging (Bellingham, Wash.).2015 10;26835491
Developing a utility decision framework to evaluate predictive models in breast cancer risk estimation.Wu, Yirong; Abbey, Craig K; Chen, Xianqiao; Liu, Jie; Page, David C; Alagoz, Oguzhan; Peissig, Peggy; Onitilo, Adedayo A; Burnside, Elizabeth SJournal of medical imaging (Bellingham, Wash.).2015 Oct;26835489
MinION Analysis and Reference Consortium: Phase 1 data release and analysis.Ip, Camilla L C; Loose, Matthew; Tyson, John R; de Cesare, Mariateresa; Brown, Bonnie L; Jain, Miten; Leggett, Richard M; Eccles, David A; Zalunin, Vadim; Urban, John M; Piazza, Paolo; Bowden, Rory J; Paten, Benedict; Mwaigwisya, Solomon; Batty, Elizabeth M; Simpson, Jared T; Snutch, Terrance P; Birney, Ewan; Buck, David; Goodwin, Sara; Jansen, Hans J; O'Grady, Justin; Olsen, Hugh E; MinION Analysis and Reference ConsortiumF1000Research.2015;26834992
CAreDroid: Adaptation Framework for Android Context-Aware Applications.Elmalaki, Salma; Wanner, Lucas; Srivastava, ManiProceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking.2015 Sep;26834512
Quantification of private information leakage from phenotype-genotype data: linking attacks.Harmanci, Arif; Gerstein, MarkNature methods.2016 Mar;26828419
Temporal neutrophil polarization following myocardial infarction.Ma, Yonggang; Yabluchanskiy, Andriy; Iyer, Rugmani Padmanabhan; Cannon, Presley L; Flynn, Elizabeth R; Jung, Mira; Henry, Jeffrey; Cates, Courtney A; Deleon-Pennell, Kristine Y; Lindsey, Merry LCardiovascular research.2016 May 01;26825554
Characterising resting-state functional connectivity in a large sample of adults with ADHD.Mostert, Jeanette C; Shumskaya, Elena; Mennes, Maarten; Onnink, A Marten H; Hoogman, Martine; Kan, Cornelis C; Arias Vasquez, Alejandro; Buitelaar, Jan; Franke, Barbara; Norris, David GProgress in neuro-psychopharmacology & biological psychiatry.2016 Jun 03;26825495
Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma.Ceccarelli, Michele; Barthel, Floris P; Malta, Tathiane M; Sabedot, Thais S; Salama, Sofie R; Murray, Bradley A; Morozova, Olena; Newton, Yulia; Radenbaugh, Amie; Pagnotta, Stefano M; Anjum, Samreen; Wang, Jiguang; Manyam, Ganiraju; Zoppoli, Pietro; Ling, Shiyun; Rao, Arjun A; Grifford, Mia; Cherniack, Andrew D; Zhang, Hailei; Poisson, Laila; Carlotti Jr, Carlos Gilberto; Tirapelli, Daniela Pretti da Cunha; Rao, Arvind; Mikkelsen, Tom; Lau, Ching C; Yung, W K Alfred; Rabadan, Raul; Huse, Jason; Brat, Daniel J; Lehman, Norman L; Barnholtz-Sloan, Jill S; Zheng, Siyuan; Hess, Kenneth; Rao, Ganesh; Meyerson, Matthew; Beroukhim, Rameen; Cooper, Lee; Akbani, Rehan; Wrensch, Margaret; Haussler, David; Aldape, Kenneth D; Laird, Peter W; Gutmann, David H; TCGA Research Network; Noushmehr, Houtan; Iavarone, Antonio; Verhaak, Roel G WCell.2016 Jan 28;26824661
Genetic imaging consortium for addiction medicine: From neuroimaging to genes.Mackey, Scott; Kan, Kees-Jan; Chaarani, Bader; Alia-Klein, Nelly; Batalla, Albert; Brooks, Samantha; Cousijn, Janna; Dagher, Alain; de Ruiter, Michiel; Desrivieres, Sylvane; Feldstein Ewing, Sarah W; Goldstein, Rita Z; Goudriaan, Anna E; Heitzeg, Mary M; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Morales, Angelica M; Paulus, Martin P; Paus, Tomas; Pearlson, Godfrey; Schluter, Renée; Momenan, Reza; Schmaal, Lianne; Schumann, Gunter; Sinha, Rajita; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot A; Solowij, Nadia; Tapert, Susan; Uhlmann, Anne; Veltman, Dick; van Holst, Ruth; Walter, Henrik; Wright, Margaret J; Yucel, Murat; Yurgelun-Todd, Deborah; Hibar, Derrek P; Jahanshad, Neda; Thompson, Paul M; Glahn, David C; Garavan, Hugh; Conrod, PatriciaProgress in brain research.2016;26822360
REEF: Retainable Evaluator Execution Framework.Weimer, Markus; Chen, Yingda; Chun, Byung-Gon; Condie, Tyson; Curino, Carlo; Douglas, Chris; Lee, Yunseong; Majestro, Tony; Malkhi, Dahlia; Matusevych, Sergiy; Myers, Brandon; Narayanamurthy, Shravan; Ramakrishnan, Raghu; Rao, Sriram; Sears, Russell; Sezgin, Beysim; Wang, JuliaProceedings. ACM-Sigmod International Conference on Management of Data.2015 May-Jun;26819493
Leveraging Genomic Annotations and Pleiotropic Enrichment for Improved Replication Rates in Schizophrenia GWAS.Wang, Yunpeng; Thompson, Wesley K; Schork, Andrew J; Holland, Dominic; Chen, Chi-Hua; Bettella, Francesco; Desikan, Rahul S; Li, Wen; Witoelar, Aree; Zuber, Verena; Devor, Anna; Bipolar Disorder and Schizophrenia Working Group of the Psychiatric Genomics Consortium; Enhancing Neuro Imaging Genetics through Meta Analysis Consortium; Nöthen, Markus M; Rietschel, Marcella; Chen, Qiang; Werge, Thomas; Cichon, Sven; Weinberger, Daniel R; Djurovic, Srdjan; O'Donovan, Michael; Visscher, Peter M; Andreassen, Ole A; Dale, Anders MPLoS genetics.2016 Jan;26808560
Randomised trials for the Fitbit generation.Dempsey, Walter; Liao, Peng; Klasnja, Pedja; Nahum-Shani, Inbal; Murphy, Susan ASignificance (Oxford, England).2015 Dec 1;26807137
The GAAIN Entity Mapper: An Active-Learning System for Medical Data Mapping.Ashish, Naveen; Dewan, Peehoo; Toga, Arthur WFrontiers in neuroinformatics.2015;26793094
Quantifying prion disease penetrance using large population control cohorts.Minikel, Eric Vallabh; Vallabh, Sonia M; Lek, Monkol; Estrada, Karol; Samocha, Kaitlin E; Sathirapongsasuti, J Fah; McLean, Cory Y; Tung, Joyce Y; Yu, Linda P C; Gambetti, Pierluigi; Blevins, Janis; Zhang, Shulin; Cohen, Yvonne; Chen, Wei; Yamada, Masahito; Hamaguchi, Tsuyoshi; Sanjo, Nobuo; Mizusawa, Hidehiro; Nakamura, Yosikazu; Kitamoto, Tetsuyuki; Collins, Steven J; Boyd, Alison; Will, Robert G; Knight, Richard; Ponto, Claudia; Zerr, Inga; Kraus, Theo F J; Eigenbrod, Sabina; Giese, Armin; Calero, Miguel; de Pedro-Cuesta, Jesús; Haïk, Stéphane; Laplanche, Jean-Louis; Bouaziz-Amar, Elodie; Brandel, Jean-Philippe; Capellari, Sabina; Parchi, Piero; Poleggi, Anna; Ladogana, Anna; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Marshall, Jamie L; Boehnke, Michael; Laakso, Markku; Mohlke, Karen L; Kähler, Anna; Chambert, Kimberly; McCarroll, Steven; Sullivan, Patrick F; Hultman, Christina M; Purcell, Shaun M; Sklar, Pamela; van der Lee, Sven J; Rozemuller, Annemieke; Jansen, Casper; Hofman, Albert; Kraaij, Robert; van Rooij, Jeroen G J; Ikram, M Arfan; Uitterlinden, André G; van Duijn, Cornelia M; Exome Aggregation Consortium (ExAC); Daly, Mark J; MacArthur, Daniel GScience translational medicine.2016 Jan 20;26791950
Abnormal asymmetries in subcortical brain volume in schizophrenia.Okada, N; Fukunaga, M; Yamashita, F; Koshiyama, D; Yamamori, H; Ohi, K; Yasuda, Y; Fujimoto, M; Watanabe, Y; Yahata, N; Nemoto, K; Hibar, D P; van Erp, T G M; Fujino, H; Isobe, M; Isomura, S; Natsubori, T; Narita, H; Hashimoto, N; Miyata, J; Koike, S; Takahashi, T; Yamasue, H; Matsuo, K; Onitsuka, T; Iidaka, T; Kawasaki, Y; Yoshimura, R; Watanabe, Y; Suzuki, M; Turner, J A; Takeda, M; Thompson, P M; Ozaki, N; Kasai, K; Hashimoto, RMolecular psychiatry.2016 10;26782053
Rapid Sampling for Visualizations with Ordering Guarantees.Kim, Albert; Blais, Eric; Parameswaran, Aditya; Indyk, Piotr; Madden, Sam; Rubinfeld, RonittProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Jan;26779380
SeeDB: Efficient Data-Driven Visualization Recommendations to Support Visual Analytics.Vartak, Manasi; Rahman, Sajjadur; Madden, Samuel; Parameswaran, Aditya; Polyzotis, NeoklisProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Sep;26779379
REPRODUCIBLE AND SHAREABLE QUANTIFICATIONS OF PATHOGENICITY.Manrai, Arjun K; Wang, Brice L; Patel, Chirag J; Kohane, Isaac SPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.2016;26776189
TNNT1, TNNT2, and TNNT3: Isoform genes, regulation, and structure-function relationships.Wei, Bin; Jin, J-PGene.2016 May 10;26774798
May the fibrosis be with you: Is discoidin domain receptor 2 the receptor we have been looking for?DeLeon-Pennell, Kristine YJournal of molecular and cellular cardiology.2016 Feb;26772530
Heritability and reliability of automatically segmented human hippocampal formation subregions.Whelan, Christopher D; Hibar, Derrek P; van Velzen, Laura S; Zannas, Anthony S; Carrillo-Roa, Tania; McMahon, Katie; Prasad, Gautam; Kelly, Sinéad; Faskowitz, Joshua; deZubiracay, Greig; Iglesias, Juan E; van Erp, Theo G M; Frodl, Thomas; Martin, Nicholas G; Wright, Margaret J; Jahanshad, Neda; Schmaal, Lianne; Sämann, Philipp G; Thompson, Paul M; Alzheimer's Disease Neuroimaging InitiativeNeuroImage.2016 Mar;26747746
Head Motion and Inattention/Hyperactivity Share Common Genetic Influences: Implications for fMRI Studies of ADHD.Couvy-Duchesne, Baptiste; Ebejer, Jane L; Gillespie, Nathan A; Duffy, David L; Hickie, Ian B; Thompson, Paul M; Martin, Nicholas G; de Zubicaray, Greig I; McMahon, Katie L; Medland, Sarah E; Wright, Margaret JPloS one.2016;26745144
OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data.Leng, Ning; Choi, Jeea; Chu, Li-Fang; Thomson, James A; Kendziorski, Christina; Stewart, RonBioinformatics (Oxford, England).2016 May 01;26743507
The Budding Yeast Ubiquitin Protease Ubp7 Is a Novel Component Involved in S Phase Progression.Böhm, Stefanie; Szakal, Barnabas; Herken, Benjamin W; Sullivan, Meghan R; Mihalevic, Michael J; Kabbinavar, Faiz F; Branzei, Dana; Clark, Nathan L; Bernstein, Kara AThe Journal of biological chemistry.2016 Feb 26;26740628
UCSC Data Integrator and Variant Annotation Integrator.Hinrichs, Angie S; Raney, Brian J; Speir, Matthew L; Rhead, Brooke; Casper, Jonathan; Karolchik, Donna; Kuhn, Robert M; Rosenbloom, Kate R; Zweig, Ann S; Haussler, David; Kent, W JamesBioinformatics (Oxford, England).2016 May 01;26740527
The crossroads of inflammation, fibrosis, and arrhythmia following myocardial infarction.Francis Stuart, Samantha D; De Jesus, Nicole M; Lindsey, Merry L; Ripplinger, Crystal MJournal of molecular and cellular cardiology.2016 Feb;26739214
LRP5: A novel anti-inflammatory macrophage marker that positively regulates migration and phagocytosis.Ma, YonggangJournal of molecular and cellular cardiology.2016 Feb;26739212
Conditional Random Fields for Morphological Analysis of Wireless ECG Signals.Natarajan, Annamalai; Gaiser, Edward; Angarita, Gustavo; Malison, Robert; Ganesan, Deepak; Marlin, BenjaminACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine.2014;26726321
Titian: Data Provenance Support in Spark.Interlandi, Matteo; Shah, Kshitij; Tetali, Sai Deep; Gulzar, Muhammad Ali; Yoo, Seunghyun; Kim, Miryung; Millstein, Todd; Condie, TysonProceedings of the VLDB Endowment. International Conference on Very Large Data Bases.2015 Nov;26726305
Matrix metalloproteinases as input and output signals for post-myocardial infarction remodeling.Lindsey, Merry L; Iyer, Rugmani Padmanabhan; Jung, Mira; DeLeon-Pennell, Kristine Y; Ma, YonggangJournal of molecular and cellular cardiology.2016 Feb;26721597
Comment: Getting a handle on HAND in the era of cART.Cohen, Ronald A; Navia, BradfordNeurology.2016 Jan 26;26718565
Debiasing Crowdsourced Batches.Zhuang, Honglei; Parameswaran, Aditya; Roth, Dan; Han, JiaweiKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26713175
Fast Inbound Top-K Query for Random Walk with Restart.Zhang, Chao; Jiang, Shan; Chen, Yucheng; Sun, Yidan; Han, JiaweiMachine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference).2015 Sep;26709392
TOPTRAC: Topical Trajectory Pattern Mining.Kim, Younghoon; Han, Jiawei; Yuan, CangzhouKDD : proceedings. International Conference on Knowledge Discovery & Data Mining.2015 Aug;26709365
Sample size calculations for micro-randomized trials in mHealth.Liao, Peng; Klasnja, Predrag; Tewari, Ambuj; Murphy, Susan AStatistics in medicine.2016 05 30;26707831
Robust Classification of Information Networks by Consistent Graph Learning.Zhi, Shi; Han, Jiawei; Gu, QuanquanMachine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference).2015 Sep;26705541
Leveraging Pattern Semantics for Extracting Entities in Enterprises.Tao, Fangbo; Zhao, Bo; Fuxman, Ariel; Li, Yang; Han, JiaweiProceedings of the ... International World-Wide Web Conference. International WWW Conference.2015 May;26705540
Graph Regularized Meta-path Based Transductive Regression in H