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Single Cell Analysis (218)
Publication TitleAuthorsJournalPublication DatePage NoPubMedID
Spatial colocalization and functional link of purinosomes with mitochondria.French, Jarrod B; Jones, Sara A; Deng, Huayun; Pedley, Anthony M; Kim, Doory; Chan, Chung Yu; Hu, Haibei; Pugh, Raymond J; Zhao, Hong; Zhang, Youxin; Huang, Tony Jun; Fang, Ye; Zhuang, Xiaowei; Benkovic, Stephen JScience (New York, N.Y.).2016 Feb 12;733-726912862
Single-Cell Detection of Secreted A? and sAPP? from Human IPSC-Derived Neurons and Astrocytes.Liao, Mei-Chen; Muratore, Christina R; Gierahn, Todd M; Sullivan, Sarah E; Srikanth, Priya; De Jager, Philip L; Love, J Christopher; Young-Pearse, Tracy LThe Journal of neuroscience : the official journal of the Society for Neuroscience.2016 Feb 3;1730-4626843653
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis.Fan, Jean; Salathia, Neeraj; Liu, Rui; Kaeser, Gwendolyn E; Yung, Yun C; Herman, Joseph L; Kaper, Fiona; Fan, Jian-Bing; Zhang, Kun; Chun, Jerold; Kharchenko, Peter VNature methods.2016 Mar;241-426780092
A robust nonlinear tissue-component discrimination method for computational pathology.Sarnecki, Jacob S; Burns, Kathleen H; Wood, Laura D; Waters, Kevin M; Hruban, Ralph H; Wirtz, Denis; Wu, Pei-HsunLaboratory investigation; a journal of technical methods and pathology.2016 Jan 18;26779829
Expanding the CRISPR imaging toolset with Staphylococcus aureus Cas9 for simultaneous imaging of multiple genomic loci.Chen, Baohui; Hu, Jeffrey; Almeida, Ricardo; Liu, Harrison; Balakrishnan, Sanjeev; Covill-Cooke, Christian; Lim, Wendell A; Huang, BoNucleic acids research.2016 Jan 5;26740581
Generation and functional assessment of 3D multicellular spheroids in droplet based microfluidics platform.Sabhachandani, P; Motwani, V; Cohen, N; Sarkar, S; Torchilin, V; Konry, TLab on a chip.2016 Jan 26;497-50526686985
T Cell Dynamic Activation and Functional Analysis in Nanoliter Droplet Microarray.Sarkar, Saheli; Motwani, Vinny; Sabhachandani, Pooja; Cohen, Noa; Konry, TaniaJournal of clinical & cellular immunology.2015 Jun;26613065
Cell cycle features of C. elegans germline stem/progenitor cells vary temporally and spatially.Roy, Debasmita; Michaelson, David; Hochman, Tsivia; Santella, Anthony; Bao, Zhirong; Goldberg, Judith D; Hubbard, E Jane AlbertDevelopmental biology.2016 Jan 1;261-7126577869
Cytometry-based single-cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF-?-induced apoptosis in vivo.Simmons, Alan J; Banerjee, Amrita; McKinley, Eliot T; Scurrah, Cherie' R; Herring, Charles A; Gewin, Leslie S; Masuzaki, Ryota; Karp, Seth J; Franklin, Jeffrey L; Gerdes, Michael J; Irish, Jonathan M; Coffey, Robert J; Lau, Ken SMolecular systems biology.2015 Oct;83526519361
Modeling developmental neuropsychiatric disorders with iPSC technology: challenges and opportunities.Young-Pearse, Tracy L; Morrow, Eric MCurrent opinion in neurobiology.2016 Feb;66-7326517284
Reusable acoustic tweezers for disposable devices.Guo, Feng; Xie, Yuliang; Li, Sixing; Lata, James; Ren, Liqiang; Mao, Zhangming; Ren, Baiyang; Wu, Mengxi; Ozcelik, Adem; Huang, Tony JunLab on a chip.2015 Dec 21;4517-2326507411
Senescent stromal cells induce cancer cell migration via inhibition of RhoA/ROCK/myosin-based cell contractility.Aifuwa, Ivie; Giri, Anjil; Longe, Nick; Lee, Sang Hyuk; An, Steven S; Wirtz, DenisOncotarget.2015 Oct 13;30516-3126483365
Induced pluripotent stem cells as a discovery tool for Alzheimer?s disease.Sullivan, Sarah E; Young-Pearse, Tracy LBrain research.2015 Oct 13;26459988
Phenotypic drug profiling in droplet microfluidics for better targeting of drug-resistant tumors.Sarkar, S; Cohen, N; Sabhachandani, P; Konry, TLab on a chip.2015 Dec 7;4441-5026456240
The origin and implementation of the Broadening Experiences in Scientific Training programs: an NIH common fund initiative.F.J. Meyers, A. Mathur, C.N. Fuhrmann, T.C. O’Brien, I. Wefes, P.A. Labosky, D.S. Duncan, A. August, A. Feig, K.L. Gould, M.J. Friedlander, C.B. Schaffer, A. Van Wart, and R. ChalkleyThe FASEB Journal2015 Oct 2;26432783
Half dozen of one, six billion of the other: What can small- and large-scale molecular systems biology learn from one another?Mellis, Ian A; Raj, ArjunGenome research.2015 Oct;1466-7226430156
Three-dimensional matrix fiber alignment modulates cell migration and MT1-MMP utility by spatially and temporally directing protrusions.Fraley, Stephanie I; Wu, Pei-Hsun; He, Lijuan; Feng, Yunfeng; Krisnamurthy, Ranjini; Longmore, Gregory D; Wirtz, DenisScientific reports.2015;1458026423227
Cellular Deconstruction: Finding Meaning in Individual Cell Variation.Eberwine, James; Kim, JunhyongTrends in cell biology.2015 Oct;569-7826410403
Functional enrichment by direct plasmid recovery after fluorescence activated cell sorting.Ramesh, Balakrishnan; Frei, Christopher S; Cirino, Patrick C; Varadarajan, NavinBioTechniques.2015 Sep;157-6126345509
A spatiotemporally controllable chemical gradient generator via acoustically oscillating sharp-edge structures.Huang, Po-Hsun; Chan, Chung Yu; Li, Peng; Nama, Nitesh; Xie, Yuliang; Wei, Cheng-Hsin; Chen, Yuchao; Ahmed, Daniel; Huang, Tony JunLab on a chip.2015 Nov 7;4166-7626338516
Normal mammary epithelial cells promote carcinoma basement membrane invasion by inducing microtubule-rich protrusions.Lee, Meng-Horng; Wu, Pei-Hsun; Gilkes, Daniele; Aifuwa, Ivie; Wirtz, DenisOncotarget.2015 Oct 20;32634-4526334095
Tuning Sensitivity of CAR to EGFR Density Limits Recognition of Normal Tissue While Maintaining Potent Antitumor Activity.Caruso, Hillary G; Hurton, Lenka V; Najjar, Amer; Rushworth, David; Ang, Sonny; Olivares, Simon; Mi, Tiejuan; Switzer, Kirsten; Singh, Harjeet; Huls, Helen; Lee, Dean A; Heimberger, Amy B; Champlin, Richard E; Cooper, Laurence J NCancer research.2015 Sep 1;3505-1826330164
The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo.Du, Zhuo; Santella, Anthony; He, Fei; Shah, Pavak K; Kamikawa, Yuko; Bao, ZhirongDevelopmental cell.2015 Sep 14;592-60726321128
A high-throughput acoustic cell sorter.Ren, Liqiang; Chen, Yuchao; Li, Peng; Mao, Zhangming; Huang, Po-Hsun; Rufo, Joseph; Guo, Feng; Wang, Lin; McCoy, J Philip; Levine, Stewart J; Huang, Tony JunLab on a chip.2015 Oct 7;3870-926289231
Imaging Tumor Acidity: pH-Low Insertion Peptide Probe for Optoacoustic Tomography.Reshetnyak, Yana KClinical cancer research : an official journal of the American Association for Cancer Research.2015 Jul 29;26224874
Exploring bubble oscillation and mass transfer enhancement in acoustic-assisted liquid-liquid extraction with a microfluidic device.Xie, Yuliang; Chindam, Chandraprakash; Nama, Nitesh; Yang, Shikuan; Lu, Mengqian; Zhao, Yanhui; Mai, John D; Costanzo, Francesco; Huang, Tony JunScientific reports.2015;1257226223474
Integration of cell-cell and cell-ECM adhesion in vertebrate morphogenesis.McMillen, Patrick; Holley, Scott ACurrent opinion in cell biology.2015 Oct;48-5326189063
Plasmofluidics: Merging Light and Fluids at the Micro-/Nanoscale.Wang, Mingsong; Zhao, Chenglong; Miao, Xiaoyu; Zhao, Yanhui; Rufo, Joseph; Liu, Yan Jun; Huang, Tony Jun; Zheng, YuebingSmall (Weinheim an der Bergstrasse, Germany).2015 Sep 16;4423-4426140612
Piwi Is a Key Regulator of Both Somatic and Germline Stem Cells in the Drosophila Testis.Gonzalez, Jacob; Qi, Hongying; Liu, Na; Lin, HaifanCell reports.2015 Jul 7;150-6126119740
Multiplexed detection of viral infections using rapid in situ RNA analysis on a chip.Shaffer, Sydney M; Joshi, Rohan P; Chambers, Benjamin S; Sterken, David; Biaesch, Andrew G; Gabrieli, David J; Li, Yang; Feemster, Kristen A; Hensley, Scott E; Issadore, David; Raj, ArjunLab on a chip.2015 Aug 7;3170-8226113495
Inhibition of Spleen Tyrosine Kinase Potentiates Paclitaxel-Induced Cytotoxicity in Ovarian Cancer Cells by Stabilizing Microtubules.Yu, Yu; Gaillard, Stephanie; Phillip, Jude M; Huang, Tai-Chung; Pinto, Sneha M; Tessarollo, Nayara G; Zhang, Zhen; Pandey, Akhilesh; Wirtz, Denis; Ayhan, Ayse; Davidson, Ben; Wang, Tian-Li; Shih, Ie-MingCancer cell.2015 Jul 13;82-9626096845
Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING).Merouane, Amine; Rey-Villamizar, Nicolas; Lu, Yanbin; Liadi, Ivan; Romain, Gabrielle; Lu, Jennifer; Singh, Harjeet; Cooper, Laurence J N; Varadarajan, Navin; Roysam, BadrinathBioinformatics (Oxford, England).2015 Oct 1;3189-9726059718
Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation.Dueck, Hannah; Khaladkar, Mugdha; Kim, Tae Kyung; Spaethling, Jennifer M; Francis, Chantal; Suresh, Sangita; Fisher, Stephen A; Seale, Patrick; Beck, Sheryl G; Bartfai, Tamas; Kuhn, Bernhard; Eberwine, James; Kim, JunhyongGenome biology.2015;12226056000
Mechanical Allostery: Evidence for a Force Requirement in the Proteolytic Activation of Notch.Gordon, Wendy R; Zimmerman, Brandon; He, Li; Miles, Laura J; Huang, Jiuhong; Tiyanont, Kittichoat; McArthur, Debbie G; Aster, Jon C; Perrimon, Norbert; Loparo, Joseph J; Blacklow, Stephen CDevelopmental cell.2015 Jun 22;729-3626051539
WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration.Santella, Anthony; Catena, Raúl; Kovacevic, Ismar; Shah, Pavak; Yu, Zidong; Marquina-Solis, Javier; Kumar, Abhishek; Wu, Yicong; Schaff, James; Colón-Ramos, Daniel; Shroff, Hari; Mohler, William A; Bao, ZhirongBMC bioinformatics.2015;18926051157
Scalable microfluidics for single-cell RNA printing and sequencing.Bose, Sayantan; Wan, Zhenmao; Carr, Ambrose; Rizvi, Abbas H; Vieira, Gregory; Pe'er, Dana; Sims, Peter AGenome biology.2015;12026047807
Variations in dysfunction of sister chromatid cohesion in esco2 mutant zebrafish reflect the phenotypic diversity of Roberts syndrome.Percival, Stefanie M; Thomas, Holly R; Amsterdam, Adam; Carroll, Andrew J; Lees, Jacqueline A; Yost, H Joseph; Parant, John MDisease models & mechanisms.2015 Aug 1;941-5526044958
Compact and modular multicolour fluorescence detector for droplet microfluidics.Cole, Russell H; de Lange, Niek; Gartner, Zev J; Abate, Adam RLab on a chip.2015 Jul 7;2754-826032595
A New Interleukin-13 Amino-Coated Gadolinium Metallofullerene Nanoparticle for Targeted MRI Detection of Glioblastoma Tumor Cells.Li, Tinghui; Murphy, Susan; Kiselev, Boris; Bakshi, Kanwarpal S; Zhang, Jianyuan; Eltahir, Amnah; Zhang, Yafen; Chen, Ying; Zhu, Jie; Davis, Richey M; Madsen, Louis A; Morris, John R; Karolyi, Daniel R; LaConte, Stephen M; Sheng, Zhi; Dorn, Harry CJournal of the American Chemical Society.2015 Jun 24;7881-826022213
Numerical study of acoustophoretic motion of particles in a PDMS microchannel driven by surface acoustic waves.Nama, Nitesh; Barnkob, Rune; Mao, Zhangming; Kähler, Christian J; Costanzo, Francesco; Huang, Tony JunLab on a chip.2015 Jun 21;2700-926001199
Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.Klein, Allon M; Mazutis, Linas; Akartuna, Ilke; Tallapragada, Naren; Veres, Adrian; Li, Victor; Peshkin, Leonid; Weitz, David A; Kirschner, Marc WCell.2015 May 21;1187-20126000487
Rapid and Localized Mechanical Stimulation and Adhesion Assay: TRPM7 Involvement in Calcium Signaling and Cell Adhesion.Nishitani, Wagner Shin; Alencar, Adriano Mesquita; Wang, YingxiaoPloS one.2015;e012644025946314
Tuning noise in gene expression.Tyagi, SanjayMolecular systems biology.2015 May;80525943344
Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo.Onjiko, Rosemary M; Moody, Sally A; Nemes, PeterProceedings of the National Academy of Sciences of the United States of America.2015 May 26;6545-5025941375
Transforming training to reflect the workforce.Mathur, Ambika; Meyers, Frederick J; Chalkley, Roger; O'Brien, Theresa C; Fuhrmann, Cynthia NScience translational medicine.2015 Apr 29;285ed425925677
Closed-loop, ultraprecise, automated craniotomies.Pak, Nikita; Siegle, Joshua H; Kinney, Justin P; Denman, Daniel J; Blanche, Timothy J; Boyden, Edward SJournal of neurophysiology.2015 Jun 1;3943-5325855700
SNES: single nucleus exome sequencing.Leung, Marco L; Wang, Yong; Waters, Jill; Navin, Nicholas EGenome biology.2015;5525853327
Acoustic separation of circulating tumor cells.Li, Peng; Mao, Zhangming; Peng, Zhangli; Zhou, Lanlan; Chen, Yuchao; Huang, Po-Hsun; Truica, Cristina I; Drabick, Joseph J; El-Deiry, Wafik S; Dao, Ming; Suresh, Subra; Huang, Tony JunProceedings of the National Academy of Sciences of the United States of America.2015 Apr 21;4970-525848039
Neuregulin stimulation of cardiomyocyte regeneration in mice and human myocardium reveals a therapeutic window.Polizzotti, Brian D; Ganapathy, Balakrishnan; Walsh, Stuart; Choudhury, Sangita; Ammanamanchi, Niyatie; Bennett, David G; dos Remedios, Cristobal G; Haubner, Bernhard J; Penninger, Josef M; Kühn, BernhardScience translational medicine.2015 Apr 1;281ra4525834111
Brief Report: Oxidative Stress Mediates Cardiomyocyte Apoptosis in a Human Model of Danon Disease and Heart Failure.Hashem, Sherin I; Perry, Cynthia N; Bauer, Matthieu; Han, Sangyoon; Clegg, Stacey D; Ouyang, Kunfu; Deacon, Dekker C; Spinharney, Mary; Panopoulos, Athanasia D; Izpisua Belmonte, Juan Carlos; Frazer, Kelly A; Chen, Ju; Gong, Qiuming; Zhou, Zhengfeng; Chi,Stem cells (Dayton, Ohio).2015 Jul;2343-5025826782
The tissue mechanics of vertebrate body elongation and segmentation.McMillen, Patrick; Holley, Scott ACurrent opinion in genetics & development.2015 Jun;106-1125796079
Identification of novel long noncoding RNAs underlying vertebrate cardiovascular development.Kurian, Leo; Aguirre, Aitor; Sancho-Martinez, Ignacio; Benner, Christopher; Hishida, Tomoaki; Nguyen, Thai B; Reddy, Pradeep; Nivet, Emmanuel; Krause, Marie N; Nelles, David A; Rodriguez Esteban, Concepcion; Campistol, Josep M; Yeo, Gene W; Izpisua BelmonCirculation.2015 Apr 7;1278-9025739401
Ploidy-Seq: inferring mutational chronology by sequencing polyploid tumor subpopulations.Malhotra, Ankit; Wang, Yong; Waters, Jill; Chen, Ken; Meric-Bernstam, Funda; Hall, Ira M; Navin, Nicholas EGenome medicine.2015;625729435
Statistical analysis of cell migration in 3D using the anisotropic persistent random walk model.Wu, Pei-Hsun; Giri, Anjil; Wirtz, DenisNature protocols.2015 Mar;517-2725719270
Normalization and noise reduction for single cell RNA-seq experiments.Ding, Bo; Zheng, Lina; Zhu, Yun; Li, Nan; Jia, Haiyang; Ai, Rizi; Wildberg, Andre; Wang, WeiBioinformatics (Oxford, England).2015 Jul 1;2225-725717193
Individual Motile CD4(+) T Cells Can Participate in Efficient Multikilling through Conjugation to Multiple Tumor Cells.Liadi, Ivan; Singh, Harjeet; Romain, Gabrielle; Rey-Villamizar, Nicolas; Merouane, Amine; Adolacion, Jay R T; Kebriaei, Partow; Huls, Helen; Qiu, Peng; Roysam, Badrinath; Cooper, Laurence J N; Varadarajan, NavinCancer immunology research.2015 May;473-8225711538
COX-2 dependent regulation of mechanotransduction in human breast cancer cells.Yoon, A-Rum; Stasinopoulos, Ioannis; Kim, Jae Hun; Yong, Hwan Mee; Kilic, Onur; Wirtz, Denis; Bhujwalla, Zaver M; An, Steven SCancer biology & therapy.2015;430-725701047
Cytoskeletal tension induces the polarized architecture of the nucleus.Kim, Dong-Hwee; Wirtz, DenisBiomaterials.2015 Apr;161-7225701041
Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues.Lee, Je Hyuk; Daugharthy, Evan R; Scheiman, Jonathan; Kalhor, Reza; Ferrante, Thomas C; Terry, Richard; Turczyk, Brian M; Yang, Joyce L; Lee, Ho Suk; Aach, John; Zhang, Kun; Church, George MNature protocols.2015 Mar;442-5825675209
Single-cell analysis shows that paracrine signaling by first responder cells shapes the interferon-? response to viral infection.Patil, Sonali; Fribourg, Miguel; Ge, Yongchao; Batish, Mona; Tyagi, Sanjay; Hayot, Fernand; Sealfon, Stuart CScience signaling.2015 Feb 10;ra1625670204
Distinct mechanisms regulating mechanical force-induced Ca²? signals at the plasma membrane and the ER in human MSCs.Kim, Tae-Jin; Joo, Chirlmin; Seong, Jihye; Vafabakhsh, Reza; Botvinick, Elliot L; Berns, Michael W; Palmer, Amy E; Wang, Ning; Ha, Taekjip; Jakobsson, Eric; Sun, Jie; Wang, YingxiaoeLife.2015;e0487625667984
Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves.Guo, Feng; Zhou, Weijie; Li, Peng; Mao, Zhangming; Yennawar, Neela H; French, Jarrod B; Huang, Tony JunSmall (Weinheim an der Bergstrasse, Germany).2015 Jun;2733-725641793
Controlling lipid micelle stability using oligonucleotide headgroups.Wilner, Samantha E; Sparks, Samuel E; Cowburn, David; Girvin, Mark E; Levy, MatthewJournal of the American Chemical Society.2015 Feb 18;2171-425634639
Advanced targeted nanomedicine.Arachchige, Mohan C M; Reshetnyak, Yana K; Andreev, Oleg AJournal of biotechnology.2015 May 20;88-9725615945
Optical clearing in dense connective tissues to visualize cellular connectivity in situ.Calve, Sarah; Ready, Andrew; Huppenbauer, Christopher; Main, Russell; Neu, Corey PPloS one.2015;e011666225581165
Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.Kim, Daniel H; Marinov, Georgi K; Pepke, Shirley; Singer, Zakary S; He, Peng; Williams, Brian; Schroth, Gary P; Elowitz, Michael B; Wold, Barbara JCell stem cell.2015 Jan 8;88-10125575081
Single-neuron isolation for RNA analysis using pipette capture and laser capture microdissection.Lovatt, Ditte; Bell, Thomas; Eberwine, JamesCold Spring Harbor protocols.2015 Jan;pdb.prot07243925561613
Efficient delivery and functional expression of transfected modified mRNA in human embryonic stem cell-derived retinal pigmented epithelial cells.Hansson, Magnus L; Albert, Silvia; González Somermeyer, Louisa; Peco, Rubén; Mejía-Ramírez, Eva; Montserrat, Núria; Izpisua Belmonte, Juan CarlosThe Journal of biological chemistry.2015 Feb 27;5661-7225555917
A FRET-Based Biosensor for Imaging SYK Activities in Living Cells.Xiang, Xue; Sun, Jie; Wu, Jianhua; He, Hai-Tao; Wang, Yingxiao; Zhu, ChengCellular and molecular bioengineering.2011 Dec;670-67725541586
Controlling cell-cell interactions using surface acoustic waves.Guo, Feng; Li, Peng; French, Jarrod B; Mao, Zhangming; Zhao, Hong; Li, Sixing; Nama, Nitesh; Fick, James R; Benkovic, Stephen J; Huang, Tony JunProceedings of the National Academy of Sciences of the United States of America.2015 Jan 6;43-825535339
E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis.Du, Zhuo; He, Fei; Yu, Zidong; Bowerman, Bruce; Bao, ZhirongDevelopmental biology.2015 Feb 15;267-7925523393
In vivo activation of a conserved microRNA program induces mammalian heart regeneration.Aguirre, Aitor; Montserrat, Nuria; Zacchigna, Serena; Nivet, Emmanuel; Hishida, Tomoaki; Krause, Marie N; Kurian, Leo; Ocampo, Alejandro; Vazquez-Ferrer, Eric; Rodriguez-Esteban, Concepcion; Kumar, Sachin; Moresco, James J; Yates 3rd, John R; Campistol, JCell stem cell.2014 Nov 6;589-60425517466
Transcriptional expression of myelin basic protein in oligodendrocytes depends on functional syntaxin 4: a potential correlation with autocrine signaling.Bijlard, Marjolein; Klunder, Bert; de Jonge, Jenny C; Nomden, Anita; Tyagi, Sanjay; de Vries, Hans; Hoekstra, Dick; Baron, WiaMolecular and cellular biology.2015 Feb;675-8725512606
Profiling T cell activation using single-molecule fluorescence in situ hybridization and flow cytometry.Bushkin, Yuri; Radford, Felix; Pine, Richard; Lardizabal, Alfred; Mangura, Bonita T; Gennaro, Maria Laura; Tyagi, SanjayJournal of immunology (Baltimore, Md. : 1950).2015 Jan 15;836-4125505292
High-throughput genome editing and phenotyping facilitated by high resolution melting curve analysis.Thomas, Holly R; Percival, Stefanie M; Yoder, Bradley K; Parant, John MPloS one.2014;e11463225503746
Single-cell variation leads to population invariance in NF-*B signaling dynamics.Hughey, Jacob J; Gutschow, Miriam V; Bajar, Bryce T; Covert, Markus WMolecular biology of the cell.2015 Feb 1;583-9025473117
RE: stem cells loaded with multimechanistic oncolytic herpes simplex virus variants for brain tumor therapy.Krause, Marie N; Sancho-Martinez, Ignacio; Izpisua Belmonte, Juan CarlosJournal of the National Cancer Institute.2015 Jan;36825473104
Switching from protease-independent to protease-dependent cancer cell invasion.He, Lijuan; Wirtz, DenisBiophysical journal.2014 Dec 2;2484-525468324
Reprogramming by lineage specifiers: blurring the lines between pluripotency and differentiation.Sancho-Martinez, Ignacio; Ocampo, Alejandro; Izpisua Belmonte, Juan CarlosCurrent opinion in genetics & development.2014 Oct;57-6325461451
Optical clearing in collagen- and proteoglycan-rich osteochondral tissues.Neu, C P; Novak, T; Gilliland, K F; Marshall, P; Calve, SOsteoarthritis and cartilage / OARS, Osteoarthritis Research Society.2015 Mar;405-1325454370
Microchip amplifier for in vitro, in vivo, and automated whole cell patch-clamp recording.Harrison, Reid R; Kolb, Ilya; Kodandaramaiah, Suhasa B; Chubykin, Alexander A; Yang, Aimei; Bear, Mark F; Boyden, Edward S; Forest, Craig RJournal of neurophysiology.2015 Feb 15;1275-8225429119
Single-cell tracking with PET using a novel trajectory reconstruction algorithm.Lee, Keum Sil; Kim, Tae Jin; Pratx, GuillemIEEE transactions on medical imaging.2015 Apr;994-100325423651
Acoustofluidic chemical waveform generator and switch.Ahmed, Daniel; Muddana, Hari S; Lu, Mengqian; French, Jarrod B; Ozcelik, Adem; Fang, Ye; Butler, Peter J; Benkovic, Stephen J; Manz, Andreas; Huang, Tony JunAnalytical chemistry.2014 Dec 2;11803-1025405550
Standing surface acoustic wave (SSAW)-based cell washing.Li, Sixing; Ding, Xiaoyun; Mao, Zhangming; Chen, Yuchao; Nama, Nitesh; Guo, Feng; Li, Peng; Wang, Lin; Cameron, Craig E; Huang, Tony JunLab on a chip.2015 Jan 7;331-825372273
Prolonged mechanical stretch initiates intracellular calcium oscillations in human mesenchymal stem cells.Kim, Tae-Jin; Sun, Jie; Lu, Shaoying; Qi, Ying-Xin; Wang, YingxiaoPloS one.2014;e10937825329052
Cardiac regeneration based on mechanisms of cardiomyocyte proliferation and differentiation.Senyo, Samuel E; Lee, Richard T; Kuhn, BernhardStem cell research.2014 Nov;532-4125306390
Dual-view plane illumination microscopy for rapid and spatially isotropic imaging.Kumar, Abhishek; Wu, Yicong; Christensen, Ryan; Chandris, Panagiotis; Gandler, William; McCreedy, Evan; Bokinsky, Alexandra; Colon-Ramos, Daniel A; Bao, Zhirong; McAuliffe, Matthew; Rondeau, Gary; Shroff, HariNature protocols.2014 Nov;2555-7325299154
The KRUPPEL-like transcription factor DATILOGRAFO is required in specific cholinergic neurons for sexual receptivity in Drosophila females.Schinaman, Joseph Moeller; Giesey, Rachel Lynn; Mizutani, Claudia Mieko; Lukacsovich, Tamas; Sousa-Neves, RuiPLoS biology.2014 Oct;e100196425291190
Tip-enhanced laser ablation sample transfer for biomolecule mass spectrometry.Ghorai, Suman; Seneviratne, Chinthaka A; Murray, Kermit KJournal of the American Society for Mass Spectrometry.2015 Jan;63-7025287125
Functional imaging in OA: role of imaging in the evaluation of tissue biomechanics.Neu, C POsteoarthritis and cartilage / OARS, Osteoarthritis Research Society.2014 Oct;1349-5925278049
Muscling up the heart: a preadolescent cardiomyocyte proliferation contributes to heart growth.Zhang, Cheng-Hai; Kuhn, BernhardCirculation research.2014 Sep 26;690-225258401
Antibody Fc engineering improves frequency and promotes kinetic boosting of serial killing mediated by NK cells.Romain, Gabrielle; Senyukov, Vladimir; Rey-Villamizar, Nicolas; Merouane, Amine; Kelton, William; Liadi, Ivan; Mahendra, Ankit; Charab, Wissam; Georgiou, George; Roysam, Badrinath; Lee, Dean A; Varadarajan, NavinBlood.2014 Nov 20;3241-925232058
Cancer genomics: one cell at a time.Navin, Nicholas EGenome biology.2014;45225222669
Sorting out where fibroblasts come from.Moore-Morris, Thomas; Tallquist, Michelle D; Evans, Sylvia MCirculation research.2014 Sep 12;602-425214570
Conversion of human fibroblasts into monocyte-like progenitor cells.Pulecio, Julian; Nivet, Emmanuel; Sancho-Martinez, Ignacio; Vitaloni, Marianna; Guenechea, Guillermo; Xia, Yun; Kurian, Leo; Dubova, Ilir; Bueren, Juan; Laricchia-Robbio, Leopoldo; Izpisua Belmonte, Juan CarlosStem cells (Dayton, Ohio).2014 Nov;2923-3825175072
Modeling of the dorsal gradient across species reveals interaction between embryo morphology and Toll signaling pathway during evolution.Ambrosi, Priscilla; Chahda, Juan Sebastian; Koslen, Hannah R; Chiel, Hillel J; Mizutani, Claudia MiekoPLoS computational biology.2014 Aug;e100380725165818
Spatial and temporal organization of signaling pathways.Housden, Benjamin E; Perrimon, NorbertTrends in biochemical sciences.2014 Oct;457-6425155749
Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing.Yang, Bin; Treweek, Jennifer B; Kulkarni, Rajan P; Deverman, Benjamin E; Chen, Chun-Kan; Lubeck, Eric; Shah, Sheel; Cai, Long; Gradinaru, VivianaCell2014 Aug 14945-5825088144
Clonal evolution in breast cancer revealed by single nucleus genome sequencing.Wang, Yong; Waters, Jill; Leung, Marco L; Unruh, Anna; Roh, Whijae; Shi, Xiuqing; Chen, Ken; Scheet, Paul; Vattathil, Selina; Liang, Han; Multani, Asha; Zhang, Hong; Zhao, Rui; Michor, Franziska; Meric-Bernstam, Funda; Navin, Nicholas ENature2014 Aug 14155-6025079324
Dynamic heterogeneity and DNA methylation in embryonic stem cells.Singer, Zakary S; Yong, John; Tischler, Julia; Hackett, Jamie A; Altinok, Alphan; Surani, M Azim; Cai, Long; Elowitz, Michael BMolecular cell.2014 Jul 17;319-3125038413
Targeting breast tumors with pH (low) insertion peptides.Adochite, Ramona-Cosmina; Moshnikova, Anna; Carlin, Sean D; Guerrieri, Renato A; Andreev, Oleg A; Lewis, Jason S; Reshetnyak, Yana KMolecular pharmaceutics.2014 Aug 4;2896-90525004202
Regeneration: making muscle from hPSCs.Zhu, Xiping; Fu, Lina; Yi, Fei; Liu, Guang-Hui; Ocampo, Alejandro; Qu, Jing; Izpisua Belmonte, Juan CarlosCell research.2014 Oct;1159-6125001388
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Universal artificial antigen presenting cells to selectively propagate T cells expressing chimeric antigen receptor independent of specificity.Rushworth, David; Jena, Bipulendu; Olivares, Simon; Maiti, Sourindra; Briggs, Neima; Somanchi, Srinivas; Dai, Jianliang; Lee, Dean; Cooper, Laurence J NJournal of immunotherapy (Hagerstown, Md. : 1997)2014 May204-1324714354
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Fusion FISH imaging: single-molecule detection of gene fusion transcripts in situ.Markey, Fatu Badiane; Ruezinsky, William; Tyagi, Sanjay; Batish, MonaPloS one2014e9348824675777
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Targeted ablation of nesprin 1 and nesprin 2 from murine myocardium results in cardiomyopathy, altered nuclear morphology and inhibition of the biomechanical gene response.Banerjee, Indroneal; Zhang, Jianlin; Moore-Morris, Thomas; Pfeiffer, Emily; Buchholz, Kyle S; Liu, Ao; Ouyang, Kunfu; Stroud, Matthew J; Gerace, Larry; Evans, Sylvia M; McCulloch, Andrew; Chen, JuPLoS genetics.2014 Feb;e100411424586179
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Human heart rate: heritability of resting and stress values in twin pairs, and influence of genetic variation in the adrenergic pathway at a microribonucleic acid (microrna) motif in the 3'-UTR of cytochrome b561 [corrected].Zhang, Kuixing; Deacon, Dekker C; Rao, Fangwen; Schork, Andrew J; Fung, Maple M; Waalen, Jill; Schork, Nicholas J; Nievergelt, Caroline M; Chi, Neil C; O'Connor, Daniel TJournal of the American College of Cardiology.2014 Feb 4;358-6824140660
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Efficient generation of human iPSCs by a synthetic self-replicative RNA.Yoshioka, Naohisa; Gros, Edwige; Li, Hai-Ri; Kumar, Shantanu; Deacon, Dekker C; Maron, Cornelia; Muotri, Alysson R; Chi, Neil C; Fu, Xiang-Dong; Yu, Benjamin D; Dowdy, Steven FCell stem cell.2013 Aug 1;246-5423910086
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Detection and isolation of auto-reactive human antibodies from primary B cells.Sendra, Victor G; Lie, Anthony; Romain, Gabrielle; Agarwal, Sandeep K; Varadarajan, NavinMethods (San Diego, Calif.)2013 Jun 26NULL23811296
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Manufacture of clinical-grade CD19-specific T cells stably expressing chimeric antigen receptor using Sleeping Beauty system and artificial antigen presenting cells.Singh, Harjeet; Figliola, Matthew J; Dawson, Margaret J; Olivares, Simon; Zhang, Ling; Yang, Ge; Maiti, Sourindra; Manuri, Pallavi; Senyukov, Vladimir; Jena, Bipulendu; Kebriaei, Partow; Champlin, Richard E; Huls, Helen; Cooper, Laurence J NPloS one2013e6413823741305
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The antagonistic roles of PDGF and integrin ýývýý3 in regulating ROS production at focal adhesions.Lin, Li-Jung; Grimme, Jill M; Sun, Jie; Lu, Shaoying; Gai, Lisa; Cropek, Donald M; Wang, YingxiaoBiomaterials2013 May3807-1523465490
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High-throughput secretomic analysis of single cells to assess functional cellular heterogeneity.Lu, Yao; Chen, Jonathan J; Mu, Luye; Xue, Qiong; Wu, Yu; Wu, Pei-Hsun; Li, Jie; Vortmeyer, Alexander O; Miller-Jensen, Kathryn; Wirtz, Denis; Fan, RongAnalytical chemistry2013 Feb 192548-5623339603
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Comparative genomic hybridization and transcriptome analysis with a pan-genome microarray reveal distinctions between JP2 and non-JP2 genotypes of Aggregatibacter actinomycetemcomitans.Huang, Y; Kittichotirat, W; Mayer, M P A; Hall, R; Bumgarner, R; Chen, CMolecular oral microbiology2013 Feb17-Jan23194436
Beating in a dish: new hopes for cardiomyocyte regeneration.Gu, Ying; Yi, Fei; Liu, Guang-Hui; Izpisua Belmonte, Juan CarlosCell research.2013 Mar;314-623184058
Characterization of the effects of an rpoC mutation that confers resistance to the Fst peptide toxin-antitoxin system toxin.Brinkman, Cassandra L; Bumgarner, Roger; Kittichotirat, Weerayuth; Dunman, Paul M; Kuechenmeister, Lisa J; Weaver, Keith EJournal of bacteriology2013 Jan156-6623104812
Generation of a drug-inducible reporter system to study cell reprogramming in human cells.Ruiz, Sergio; Panopoulos, Athanasia D; Montserrat, Nuria; Multon, Marie-Christine; Daury, Aurelie; Rocher, Corinne; Spanakis, Emmanuel; Batchelder, Erika M; Orsini, Cecile; Deleuze, Jean-Francois; Izpisua Belmonte, Juan CarlosThe Journal of biological chemistry.2012 Nov 23;40767-7823019325
Red-shifted fluorescent proteins monitor enzymatic activity in live HT-1080 cells with fluorescence lifetime imaging microscopy (FLIM).Eichorst, J P; Clegg, R M; Wang, YJournal of microscopy2012 Oct77-8922971220
The dawn of angiogenesis modeling: regenerating vasculature from human pluripotent stem cells.Yi, Fei; Qu, Jing; Liu, Guang-Hui; Izpisua Belmonte, Juan CarlosCell research.2013 Jan;5-Mar22964710
Elimination of dendritic spines with long-term memory is specific to active circuits.Sanders, Jeff; Cowansage, Kiriana; Baumgartel, Karsten; Mayford, MarkThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Sep 512570-822956846
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Genome sequence of a serotype b non-JP2 aggregatibacter actinomycetemcomitans strain, ANH9381, from a periodontally healthy individual.Chen, Casey; Kittichotirat, Weerayuth; Chen, Weizhen; Downey, Jennifer S; Bumgarner, RogerJournal of bacteriology2012 Apr183722408240
The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming.Panopoulos, Athanasia D; Yanes, Oscar; Ruiz, Sergio; Kida, Yasuyuki S; Diep, Dinh; Tautenhahn, Ralf; Herrerias, Aida; Batchelder, Erika M; Plongthongkum, Nongluk; Lutz, Margaret; Berggren, W Travis; Zhang, Kun; Evans, Ronald M; Siuzdak, Gary; Izpisua BelmCell research.2012 Jan;168-7722064701
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Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1.Chen, Casey; Kittichotirat, Weerayuth; Chen, Weizhen; Downey, Jennifer S; Si, Yan; Bumgarner, RogerJournal of bacteriology2010 May2643-420348265
Genome sequence of Aggregatibacter actinomycetemcomitans serotype c strain D11S-1.Chen, Casey; Kittichotirat, Weerayuth; Si, Yan; Bumgarner, RogerJournal of bacteriology2009 Dec7378-919820097
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Identification of a genomic island of Actinobacillus actinomycetemcomitans.Chen, Weizhen; Wang, Ying; Chen, CaseyJournal of periodontology.2005 Nov2052-6016277576
Genetic basis for conversion of rough-to-smooth colony morphology in Actinobacillus actinomycetemcomitans.Wang, Ying; Liu, Amy; Chen, CaseyInfection and immunity. 2005 Jun3749-5315908406
Cytokine responses of human gingival fibroblasts to Actinobacillus actinomycetemcomitans cytolethal distending toxin.Belibasakis, G N; Johansson, A; Wang, Y; Chen, C; Lagergard, T; Kalfas, S; Lerner, U HCytokine. 2005 Apr 2156-6315804596
The cytolethal distending toxin induces receptor activator of NF-kappaB ligand expression in human gingival fibroblasts and periodontal ligament cells.Belibasakis, G N; Johansson, A; Wang, Y; Chen, C; Kalfas, S; Lerner, U HInfection and immunity. 2005 Jan342-5115618171
Cell cycle arrest of human gingival fibroblasts and periodontal ligament cells by Actinobacillus actinomycetemcomitans: involvement of the cytolethal distending toxin.Belibasakis, G N; Mattsson, A; Wang, Y; Chen, C; Johansson, AAPMIS : acta pathologica, microbiologica, et immunologica Scandinavica. 2004 Oct674-8515601319
Clonal distribution of natural competence in Actinobacillus actinomycetemcomitans.Fujise, O; Lakio, L; Wang, Y; Asikainen, S; Chen, COral microbiology and immunology. 2004 Oct340-215327649
Clonal diversity and stability of subgingival Eikenella corrodens.Fujise, O; Chen, W; Rich, S; Chen, CJournal of clinical microbiology. 2004 May2036-4215131167
Induction of T-cell apoptosis by Actinobacillus actinomycetemcomitans mutants with deletion of ltxA and cdtABC genes: possible activity of GroEL-like molecule.Nalbant, A; Chen, C; Wang, Y; Zadeh, H HOral microbiology and immunology. 2003 Dec339-4914622339
Type IV pilus gene homologs pilABCD are required for natural transformation in Actinobacillus actinomycetemcomitans.Wang, Ying; Shi, Wenyuan; Chen, Weizhen; Chen, CaseyGene. 2003 Jul 17249-5512909361
Natural transformation and DNA uptake signal sequences in Actinobacillus actinomycetemcomitans.Wang, Ying; Goodman, Steve D; Redfield, Rosemary J; Chen, CaseyJournal of bacteriology.2002 Jul3442-912057937
Susceptibilities of Eikenella corrodens, Prevotella intermedia, and Prevotella nigrescens clinical isolates to amoxicillin and tetracycline.Luong, N; Tsai, J; Chen, CAntimicrobial agents and chemotherapy.2001 Nov3253-511600394
Frequency of 530-bp deletion in Actinobacillus actinomycetemcomitans leukotoxin promoter region.Contreras, A; Rusitanonta, T; Chen, C; Wagner, W G; Michalowicz, B S; Slots, JOral microbiology and immunology. 2000 Oct338-4011154428
Importance of Dialister pneumosintes in human periodontitis.Contreras, A; Doan, N; Chen, C; Rusitanonta, T; Flynn, M J; Slots, JOral microbiology and immunology.2000 Aug269-7211154414
Molecular identification of Dialister pneumosintes in subgingival plaque of humans.Doan, N; Contreras, A; Flynn, J; Slots, J; Chen, CJournal of clinical microbiology.2000 Aug3043-710921975

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