Program Publications
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Authors | Journal | PubMedID | Publication Date |
|---|---|---|---|---|
| Phosphorylated Gβ is a directional cue during yeast gradient tracking. | Abdul-Ganiyu, Rashida; Venegas, Leon A; Wang, Xin; Puerner, Charles; Arkowitz, Robert A; Kay, Brian K; Stone, David E | Science signaling | 33975981 | 2021 05 11 |
| Structural basis for activation of SAGA histone acetyltransferase Gcn5 by partner subunit Ada2. | Sun, Jian; Paduch, Marcin; Kim, Sang-Ah; Kramer, Ryan M; Barrios, Adam F; Lu, Vincent; Luke, Judy; Usatyuk, Svitlana; Kossiakoff, Anthony A; Tan, Song | Proceedings of the National Academy of Sciences of the United States of America | 30224453 | 2018 Oct 02 |
| A toolbox of immunoprecipitation-grade monoclonal antibodies to human transcription factors. | Venkataraman, Anand; Yang, Kun; Irizarry, Jose; Mackiewicz, Mark; Mita, Paolo; Kuang, Zheng; Xue, Lin; Ghosh, Devlina; Liu, Shuang; Ramos, Pedro; Hu, Shaohui; Bayron Kain, Diane; Keegan, Sarah; Saul, Richard; Colantonio, Simona; Zhang, Hongyan; Behn, Florencia Pauli; Song, Guang; Albino, Edisa; Asencio, Lillyann; Ramos, Leonardo; Lugo, Luvir; Morell, Gloriner; Rivera, Javier; Ruiz, Kimberly; Almodovar, Ruth; Nazario, Luis; Murphy, Keven; Vargas, Ivan; Rivera-Pacheco, Zully Ann; Rosa, Christian; Vargas, Moises; McDade, Jessica; Clark, Brian S; Yoo, Sooyeon; Khambadkone, Seva G; de Melo, Jimmy; Stevanovic, Milanka; Jiang, Lizhi; Li, Yana; Yap, Wendy Y; Jones, Brittany; Tandon, Atul; Campbell, Elliot; Montelione, Gaetano T; Anderson, Stephen; Myers, Richard M; Boeke, Jef D; Fenyö, David; Whiteley, Gordon; Bader, Joel S; Pino, Ignacio; Eichinger, Daniel J; Zhu, Heng; Blackshaw, Seth | Nature methods | 29638227 | 2018 May |
| Generating FN3-Based Affinity Reagents Through Phage Display. | Gorman, Kevin; McGinnis, Jennifer; Kay, Brian | Current protocols in chemical biology | 29927113 | 2018 06 |
| Many Routes to an Antibody Heavy-Chain CDR3: Necessary, Yet Insufficient, for Specific Binding. | D'Angelo, Sara; Ferrara, Fortunato; Naranjo, Leslie; Erasmus, M Frank; Hraber, Peter; Bradbury, Andrew R M | Frontiers in immunology | 29568296 | 2018 |
| Antibody Specificity Profiling Using Protein Microarrays. | Ramos-López, Pedro; Irizarry, José; Pino, Ignacio; Blackshaw, Seth | Methods in molecular biology (Clifton, N.J.) | 29714021 | 2018 |
| Analysis of KLF4 regulated genes in cancer cells reveals a role of DNA methylation in promoter- enhancer interactions. | Oyinlade, Olutobi; Wei, Shuang; Kammers, Kai; Liu, Sheng; Wang, Shuyan; Ma, Ding; Huang, Zhi-Yong; Qian, Jiang; Zhu, Heng; Wan, Jun; Xia, Shuli | Epigenetics | 30058478 | 2018 |
| Methylated cis-regulatory elements mediate KLF4-dependent gene transactivation and cell migration. | Wan, Jun; Su, Yijing; Song, Qifeng; Tung, Brian; Oyinlade, Olutobi; Liu, Sheng; Ying, Mingyao; Ming, Guo-Li; Song, Hongjun; Qian, Jiang; Zhu, Heng; Xia, Shuli | eLife | 28553926 | 2017 05 29 |
| Generating Conformation and Complex-Specific Synthetic Antibodies. | Paduch, Marcin; Kossiakoff, Anthony A | Methods in molecular biology (Clifton, N.J.) | 28255876 | 2017 |
| Fluorescence ImmunoPrecipitation (FLIP): a Novel Assay for High-Throughput IP. | Mita, Paolo; Lhakhang, Tenzin; Li, Donghui; Eichinger, Daniel J; Fenyo, David; Boeke, Jef D | Biological procedures online | 27528826 | 2016 |
| The NIH Protein Capture Reagents Program (PCRP): a standardized protein affinity reagent toolbox. | Blackshaw, Seth; Venkataraman, Anand; Irizarry, Jose; Yang, Kun; Anderson, Stephen; Campbell, Elliot; Gatlin, Christine L; Freeman, Nancy L; Basavappa, Ravi; Stewart, Randall; Loss, Michael A; Pino, Ignacio; Zhu, Heng; Bader, Joel S | Nature methods | 27684578 | 2016 Sep 29 |
| Applications in high-content functional protein microarrays. | Moore, Cedric D; Ajala, Olutobi Z; Zhu, Heng | Current opinion in chemical biology | 26599287 | 2016 Feb |
| A polar ring endows improved specificity to an antibody fragment. | Schaefer, Zachary P; Bailey, Lucas J; Kossiakoff, Anthony A | Protein science : a publication of the Protein Society | 27334407 | 2016 Jul |
| Determination of equilibrium dissociation constants for recombinant antibodies by high-throughput affinity electrophoresis. | Pan, Yuchen; Sackmann, Eric K; Wypisniak, Karolina; Hornsby, Michael; Datwani, Sammy S; Herr, Amy E | Scientific reports | 28008969 | 2016 Dec 23 |
| In Vitro Selection of pH-Activated DNA Nanostructures. | Fong, Faye Yi; Oh, Seung Soo; Hawker, Craig J; Soh, H Tom | Angewandte Chemie (International ed. in English) | 27809385 | 2016 Dec 05 |
| The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets. | Keller, Mark P; Paul, Pradyut K; Rabaglia, Mary E; Stapleton, Donnie S; Schueler, Kathryn L; Broman, Aimee Teo; Ye, Shuyun Isabella; Leng, Ning; Brandon, Christopher J; Neto, Elias Chaibub; Plaisier, Christopher L; Simonett, Shane P; Kebede, Melkam A; Sheynkman, Gloria M; Klein, Mark A; Baliga, Nitin S; Smith, Lloyd M; Broman, Karl W; Yandell, Brian S; Kendziorski, Christina; Attie, Alan D | PLoS genetics | 27935966 | 2016 Dec |
| Directed Evolution of a Highly Specific FN3 Monobody to the SH3 Domain of Human Lyn Tyrosine Kinase. | Huang, Renhua; Fang, Pete; Hao, Zengping; Kay, Brian K | PloS one | 26731115 | 2016 |
| A comparison of phosphospecific affinity reagents reveals the utility of recombinant Forkhead-associated domains in recognizing phosphothreonine-containing peptides. | Venegas, Leon A; Pershad, Kritika; Bankole, Oluwadamilola; Shah, Noman; Kay, Brian K | New biotechnology | 26772725 | 2016 Sep 25 |
| Ligand-targeted theranostic nanomedicines against cancer. | Yao, Virginia J; D'Angelo, Sara; Butler, Kimberly S; Theron, Christophe; Smith, Tracey L; Marchiò, Serena; Gelovani, Juri G; Sidman, Richard L; Dobroff, Andrey S; Brinker, C Jeffrey; Bradbury, Andrew R M; Arap, Wadih; Pasqualini, Renata | Journal of controlled release : official journal of the Controlled Release Society | 26772878 | 2016 10 28 |
| Generating Recombinant Antibodies to Membrane Proteins through Phage Display. | Huang, Renhua; Kiss, Margaret M; Batonick, Melissa; Weiner, Michael P; Kay, Brian K | Antibodies (Basel, Switzerland) | 31557992 | 2016 May 02 |
| Optimizing Production of Antigens and Fabs in the Context of Generating Recombinant Antibodies to Human Proteins. | Zhong, Nan; Loppnau, Peter; Seitova, Alma; Ravichandran, Mani; Fenner, Maria; Jain, Harshika; Bhattacharya, Anandi; Hutchinson, Ashley; Paduch, Marcin; Lu, Vincent; Olszewski, Michal; Kossiakoff, Anthony A; Dowdell, Evan; Koide, Akiko; Koide, Shohei; Huang, Haiming; Nadeem, Vincent; Sidhu, Sachdev S; Greenblatt, Jack F; Marcon, Edyta; Arrowsmith, Cheryl H; Edwards, Aled M; Gräslund, Susanne | PloS one | 26437229 | 2015 |
| In vivo elimination of parental clones in general and site-directed mutagenesis. | Holland, Erika G; Acca, Felicity E; Belanger, Kristina M; Bylo, Mary E; Kay, Brian K; Weiner, Michael P; Kiss, Margaret M | Journal of immunological methods | 25523926 | 2015 Feb |
| Streamlining the Pipeline for Generation of Recombinant Affinity Reagents by Integrating the Affinity Maturation Step. | Huang, Renhua; Gorman, Kevin T; Vinci, Chris R; Dobrovetsky, Elena; Gräslund, Susanne; Kay, Brian K | International journal of molecular sciences | 26437402 | 2015 Sep 30 |
| Comparative analysis of eukaryotic cell-free expression systems. | Hartsough, Emily M; Shah, Pankti; Larsen, Andrew C; Chaput, John C | BioTechniques | 26345507 | 2015 Sep |
| Array-based discovery of aptamer pairs. | Cho, Minseon; Oh, Seung Soo; Nie, Jeff; Stewart, Ron; Radeke, Monte J; Eisenstein, Michael; Coffey, Peter J; Thomson, James A; Soh, H Tom | Analytical chemistry | 25495696 | 2015 Jan 06 |
| Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. | Shortreed, Michael R; Wenger, Craig D; Frey, Brian L; Sheynkman, Gloria M; Scalf, Mark; Keller, Mark P; Attie, Alan D; Smith, Lloyd M | Journal of proteome research | 26418581 | 2015 Nov 06 |
| Recombinant renewable polyclonal antibodies. | Ferrara, Fortunato; D'Angelo, Sara; Gaiotto, Tiziano; Naranjo, Leslie; Tian, Hongzhao; Gräslund, Susanne; Dobrovetsky, Elena; Hraber, Peter; Lund-Johansen, Fridtjof; Saragozza, Silvia; Sblattero, Daniele; Kiss, Csaba; Bradbury, Andrew R M | mAbs | 25530082 | 2015 |
| Deep sequencing in library selection projects: what insight does it bring? | Glanville, J; D'Angelo, S; Khan, T A; Reddy, S T; Naranjo, L; Ferrara, F; Bradbury, A R M | Current opinion in structural biology | 26451649 | 2015 Aug |
| Carbon Substrates: A Stable Foundation for Biomolecular Arrays. | Lockett, Matthew R; Smith, Lloyd M | Annual review of analytical chemistry (Palo Alto, Calif.) | 26048550 | 2015 |
| Large scale production of phage antibody libraries using a bioreactor. | Ferrara, Fortunato; Kim, Chang-Yub; Naranjo, Leslie A; Bradbury, Andrew R M | mAbs | 25524379 | 2015 |
| A New Versatile Immobilization Tag Based on the Ultra High Affinity and Reversibility of the Calmodulin-Calmodulin Binding Peptide Interaction. | Mukherjee, Somnath; Ura, Marcin; Hoey, Robert J; Kossiakoff, Anthony A | Journal of molecular biology | 26159704 | 2015 Aug 14 |
| Characterization of monoclonal antibody's binding kinetics using oblique-incidence reflectivity difference approach. | Liu, Shuang; Zhang, Hongyan; Dai, Jun; Hu, Shaohu; Pino, Ignacio; Eichinger, Daniel J; Lyu, Huibin; Zhu, Heng | mAbs | 25530170 | 2015 |
| Generating Recombinant Antibodies against Putative Biomarkers of Retinal Injury. | Kierny, Michael R; Cunningham, Thomas D; Bouhenni, Rachida A; Edward, Deepak P; Kay, Brian K | PloS one | 25902199 | 2015 |
| YcgC represents a new protein deacetylase family in prokaryotes. | Tu, Shun; Guo, Shu-Juan; Chen, Chien-Sheng; Liu, Cheng-Xi; Jiang, He-Wei; Ge, Feng; Deng, Jiao-Yu; Zhou, Yi-Ming; Czajkowsky, Daniel M; Li, Yang; Qi, Bang-Ruo; Ahn, Young-Hoon; Cole, Philip A; Zhu, Heng; Tao, Sheng-Ce | eLife | 26716769 | 2015 Dec 30 |
| Integrated electrochemical microsystems for genetic detection of pathogens at the point of care. | Hsieh, Kuangwen; Ferguson, B Scott; Eisenstein, Michael; Plaxco, Kevin W; Soh, H Tom | Accounts of chemical research | 25785632 | 2015 Apr 21 |
| Systematic Prediction of Scaffold Proteins Reveals New Design Principles in Scaffold-Mediated Signal Transduction. | Hu, Jianfei; Neiswinger, Johnathan; Zhang, Jin; Zhu, Heng; Qian, Jiang | PLoS computational biology | 26393507 | 2015 |
| An improved single-chain Fab platform for efficient display and recombinant expression. | Koerber, James T; Hornsby, Michael J; Wells, James A | Journal of molecular biology | 25481745 | 2015 Jan 30 |
| A High Through-put Platform for Recombinant Antibodies to Folded Proteins. | Hornsby, Michael; Paduch, Marcin; Miersch, Shane; Sääf, Annika; Matsuguchi, Tet; Lee, Brian; Wypisniak, Karolina; Doak, Allison; King, Daniel; Usatyuk, Svitlana; Perry, Kimberly; Lu, Vince; Thomas, William; Luke, Judy; Goodman, Jay; Hoey, Robert J; Lai, Darson; Griffin, Carly; Li, Zhijian; Vizeacoumar, Franco J; Dong, Debbie; Campbell, Elliot; Anderson, Stephen; Zhong, Nan; Gräslund, Susanne; Koide, Shohei; Moffat, Jason; Sidhu, Sachdev; Kossiakoff, Anthony; Wells, James | Molecular & cellular proteomics : MCP | 26290498 | 2015 Oct |
| Toward a systems-level view of dynamic phosphorylation networks. | Newman, Robert H; Zhang, Jin; Zhu, Heng | Frontiers in genetics | 25177341 | 2014 |
| Particle display: a quantitative screening method for generating high-affinity aptamers. | Wang, Jinpeng; Gong, Qiang; Maheshwari, Nupur; Eisenstein, Michael; Arcila, Mary Luz; Kosik, Kenneth S; Soh, H Tom | Angewandte Chemie (International ed. in English) | 24644057 | 2014 May 05 |
| Development of a full-length human protein production pipeline. | Saul, Justin; Petritis, Brianne; Sau, Sujay; Rauf, Femina; Gaskin, Michael; Ober-Reynolds, Benjamin; Mineyev, Irina; Magee, Mitch; Chaput, John; Qiu, Ji; LaBaer, Joshua | Protein science : a publication of the Protein Society | 24806540 | 2014 Aug |
| Accurate zygote-specific discrimination of single-nucleotide polymorphisms using microfluidic electrochemical DNA melting curves. | Yang, Allen H J; Hsieh, Kuangwen; Patterson, Adriana S; Ferguson, B Scott; Eisenstein, Michael; Plaxco, Kevin W; Soh, H Tom | Angewandte Chemie (International ed. in English) | 24520069 | 2014 Mar 17 |
| Synthetic aptamer-polymer hybrid constructs for programmed drug delivery into specific target cells. | Oh, Seung Soo; Lee, Bongjae F; Leibfarth, Frank A; Eisenstein, Michael; Robb, Maxwell J; Lynd, Nathaniel A; Hawker, Craig J; Soh, H Tom | Journal of the American Chemical Society | 25290917 | 2014 Oct 22 |
| From deep sequencing to actual clones. | D'Angelo, Sara; Kumar, Sandeep; Naranjo, Leslie; Ferrara, Fortunato; Kiss, Csaba; Bradbury, Andrew R M | Protein engineering, design & selection : PEDS | 25183780 | 2014 Oct |
| Label-free, real-time detection of the dynamic processes of protein degradation using oblique-incidence reflectivity difference method. | Liu, S; Zhu, J H; He, L P; Dai, J; Lu, H B; Wu, L; Jin, K J; Yang, G Z; Zhu, H | Applied physics letters | 24803682 | 2014 Apr 21 |
| MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers. | Jiang, Peng; Meyer, Susanne; Hou, Zhonggang; Propson, Nicholas E; Soh, H Tom; Thomson, James A; Stewart, Ron | Bioinformatics (Oxford, England) | 24872422 | 2014 Sep 15 |
| Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations. | Sheynkman, Gloria M; Johnson, James E; Jagtap, Pratik D; Shortreed, Michael R; Onsongo, Getiria; Frey, Brian L; Griffin, Timothy J; Smith, Lloyd M | BMC genomics | 25149441 | 2014 Aug 22 |
| The antibody mining toolbox: an open source tool for the rapid analysis of antibody repertoires. | D'Angelo, Sara; Glanville, Jacob; Ferrara, Fortunato; Naranjo, Leslie; Gleasner, Cheryl D; Shen, Xiaohong; Bradbury, Andrew R M; Kiss, Csaba | mAbs | 24423623 | 2014 Jan-Feb |
| General approach for characterizing in vitro selected peptides with protein binding affinity. | Larsen, Andrew C; Gillig, Annabelle; Shah, Pankti; Sau, Sujay P; Fenton, Kathryn E; Chaput, John C | Analytical chemistry | 24970615 | 2014 Aug 05 |
| Automated solid-phase synthesis of high capacity oligo-dT cellulose for affinity purification of poly-A tagged biomolecules. | Sau, Sujay P; Larsen, Andrew C; Chaput, John C | Bioorganic & medicinal chemistry letters | 25467163 | 2014 Dec 15 |
| Enzymatic fabrication of high-density RNA arrays. | Wu, Cheng-Hsien; Holden, Matthew T; Smith, Lloyd M | Angewandte Chemie (International ed. in English) | 25339581 | 2014 Dec 1 |
| An improved Protein G with higher affinity for human/rabbit IgG Fc domains exploiting a computationally designed polar network. | Jha, Ramesh K; Gaiotto, Tiziano; Bradbury, Andrew R M; Strauss, Charlie E M | Protein engineering, design & selection : PEDS | 24632761 | 2014 Apr |
| Aptamer-based cell imaging reagents capable of fluorescence switching. | Jung, Yun Kyung; Woo, Min-Ah; Soh, H Tom; Park, Hyun Gyu | Chemical communications (Cambridge, England) | 25182171 | 2014 Oct 21 |
| Phage display technology for human monoclonal antibodies. | Deantonio, Cecilia; Cotella, Diego; Macor, Paolo; Santoro, Claudio; Sblattero, Daniele | Methods in molecular biology (Clifton, N.J.) | 24037846 | 2014 |
| A human proteome microarray identifies that the heterogeneous nuclear ribonucleoprotein K (hnRNP K) recognizes the 5' terminal sequence of the hepatitis C virus RNA. | Fan, Baochang; Lu, Kuan-Yi; Reymond Sutandy, F X; Chen, Yi-Wen; Konan, Kouacou; Zhu, Heng; Kao, C Cheng; Chen, Chien-Sheng | Molecular & cellular proteomics : MCP | 24113282 | 2014 Jan |
| PhosphoNetworks: a database for human phosphorylation networks. | Hu, Jianfei; Rho, Hee-Sool; Newman, Robert H; Zhang, Jin; Zhu, Heng; Qian, Jiang | Bioinformatics (Oxford, England) | 24227675 | 2014 Jan 01 |
| Applications for an engineered Protein-G variant with a pH controllable affinity to antibody fragments. | Bailey, Lucas J; Sheehy, Kimberly M; Hoey, Robert J; Schaefer, Zachary P; Ura, Marcin; Kossiakoff, Anthony A | Journal of immunological methods | 25450256 | 2014 Dec 15 |
| New centromere autoantigens identified in systemic sclerosis using centromere protein microarrays. | Song, Guang; Hu, Chaojun; Zhu, Heng; Wang, Li; Zhang, Fengchun; Li, Yongzhe; Wu, Lin | The Journal of rheumatology | 23418382 | 2013 Apr |
| Overview of protein microarrays. | Sutandy, F X Reymond; Qian, Jiang; Chen, Chien-Sheng; Zhu, Heng | Current protocols in protein science | 23546620 | 2013 Apr |
| Generating conformation-specific synthetic antibodies to trap proteins in selected functional states. | Paduch, Marcin; Koide, Akiko; Uysal, Serdar; Rizk, Shahir S; Koide, Shohei; Kossiakoff, Anthony A | Methods (San Diego, Calif.) | 23280336 | 2013 Mar 15 |
| AXM mutagenesis: an efficient means for the production of libraries for directed evolution of proteins. | Holland, Erika G; Buhr, Diane L; Acca, Felicity E; Alderman, Dawn; Bovat, Kristin; Busygina, Valeria; Kay, Brian K; Weiner, Michael P; Kiss, Margaret M | Journal of immunological methods | 23680235 | 2013 Aug 30 |
| In vitro selection of shape-changing DNA nanostructures capable of binding-induced cargo release. | Oh, Seung Soo; Plakos, Kory; Xiao, Yi; Eisenstein, Michael; Soh, H Tom | ACS nano | 24168267 | 2013 Nov 26 |
| Specific binder for Lightning-Link® biotinylated proteins from an antibody phage library. | Ferrara, Fortunato; Naranjo, Leslie A; D'Angelo, Sara; Kiss, Csaba; Bradbury, Andrew R M | Journal of immunological methods | 23850993 | 2013 Sep 30 |
| Interactome mapping: using protein microarray technology to reconstruct diverse protein networks. | Uzoma, Ijeoma; Zhu, Heng | Genomics, proteomics & bioinformatics | 23395178 | 2013 Feb |
| Fabrication of oligonucleotide and protein arrays on rigid and flexible substrates coated with reactive polymer multilayers. | Broderick, Adam H; Carter, Matthew C D; Lockett, Matthew R; Smith, Lloyd M; Lynn, David M | ACS applied materials & interfaces | 23237360 | 2013 Jan 23 |
| Controlling the function of DNA nanostructures with specific trigger sequences. | Deborggraeve, Stijn; Dai, Jian Yuan; Xiao, Yi; Soh, Hyongsok Tom | Chemical communications (Cambridge, England) | 23192255 | 2013 Jan 14 |
| VirD: a virion display array for profiling functional membrane proteins. | Hu, Shaohui; Feng, Yingzhu; Henson, Brandon; Wang, Bochu; Huang, Xiaofang; Li, Min; Desai, Prashant; Zhu, Heng | Analytical chemistry | 23941274 | 2013 Sep 03 |
| DNA methylation presents distinct binding sites for human transcription factors. | Hu, Shaohui; Wan, Jun; Su, Yijing; Song, Qifeng; Zeng, Yaxue; Nguyen, Ha Nam; Shin, Jaehoon; Cox, Eric; Rho, Hee Sool; Woodard, Crystal; Xia, Shuli; Liu, Shuang; Lyu, Huibin; Ming, Guo-Li; Wade, Herschel; Song, Hongjun; Qian, Jiang; Zhu, Heng | eLife | 24015356 | 2013 Sep 03 |
| CDR-H3 diversity is not required for antigen recognition by synthetic antibodies. | Persson, Helena; Ye, Wei; Wernimont, Amy; Adams, Jarrett J; Koide, Akiko; Koide, Shohei; Lam, Robert; Sidhu, Sachdev S | Journal of molecular biology | 23219464 | 2013 Feb 22 |
| Generating thermal stable variants of protein domains through phage display. | Pershad, Kritika; Kay, Brian K | Methods (San Diego, Calif.) | 23276752 | 2013 Mar 15 |
| Development of an efficient targeted cell-SELEX procedure for DNA aptamer reagents. | Meyer, Susanne; Maufort, John P; Nie, Jeff; Stewart, Ron; McIntosh, Brian E; Conti, Lisa R; Ahmad, Kareem M; Soh, H Tom; Thomson, James A | PloS one | 23967247 | 2013 |
| Quantitative selection and parallel characterization of aptamers. | Cho, Minseon; Soo Oh, Seung; Nie, Jeff; Stewart, Ron; Eisenstein, Michael; Chambers, James; Marth, Jamey D; Walker, Faye; Thomson, James A; Soh, H Tom | Proceedings of the National Academy of Sciences of the United States of America | 24167271 | 2013 Nov 12 |
| Real-time, aptamer-based tracking of circulating therapeutic agents in living animals. | Ferguson, Brian Scott; Hoggarth, David A; Maliniak, Dan; Ploense, Kyle; White, Ryan J; Woodward, Nick; Hsieh, Kuangwen; Bonham, Andrew J; Eisenstein, Michael; Kippin, Tod E; Plaxco, Kevin W; Soh, Hyongsok Tom | Science translational medicine | 24285484 | 2013 Nov 27 |
| Construction of human activity-based phosphorylation networks. | Newman, Robert H; Hu, Jianfei; Rho, Hee-Sool; Xie, Zhi; Woodard, Crystal; Neiswinger, John; Cooper, Christopher; Shirley, Matthew; Clark, Hillary M; Hu, Shaohui; Hwang, Woochang; Jeong, Jun Seop; Wu, George; Lin, Jimmy; Gao, Xinxin; Ni, Qiang; Goel, Renu; Xia, Shuli; Ji, Hongkai; Dalby, Kevin N; Birnbaum, Morris J; Cole, Philip A; Knapp, Stefan; Ryazanov, Alexey G; Zack, Donald J; Blackshaw, Seth; Pawson, Tony; Gingras, Anne-Claude; Desiderio, Stephen; Pandey, Akhilesh; Turk, Benjamin E; Zhang, Jin; Zhu, Heng; Qian, Jiang | Molecular systems biology | 23549483 | 2013 |
| SH3 domains come of age. | Kay, Brian K | FEBS letters | 22683951 | 2012 Aug 14 |
| Selection is more intelligent than design: improving the affinity of a bivalent ligand through directed evolution. | Ahmad, Kareem M; Xiao, Yi; Soh, H Tom | Nucleic acids research | 23042245 | 2012 Dec |
| Improvements to the Kunkel mutagenesis protocol for constructing primary and secondary phage-display libraries. | Huang, Renhua; Fang, Pete; Kay, Brian K | Methods (San Diego, Calif.) | 22959950 | 2012 Sep |
| Directed evolution of the forkhead-associated domain to generate anti-phosphospecific reagents by phage display. | Pershad, Kritika; Wypisniak, Karolina; Kay, Brian K | Journal of molecular biology | 22985966 | 2012 Nov 23 |
| Selection strategy to generate aptamer pairs that bind to distinct sites on protein targets. | Gong, Qiang; Wang, Jinpeng; Ahmad, Kareem M; Csordas, Andrew T; Zhou, Jiehua; Nie, Jeff; Stewart, Ron; Thomson, James A; Rossi, John J; Soh, H Tom | Analytical chemistry | 22624874 | 2012 Jun 19 |
| Rapid identification of monospecific monoclonal antibodies using a human proteome microarray. | Jeong, Jun Seop; Jiang, Lizhi; Albino, Edisa; Marrero, Josean; Rho, Hee Sool; Hu, Jianfei; Hu, Shaohui; Vera, Carlos; Bayron-Poueymiroy, Diane; Rivera-Pacheco, Zully Ann; Ramos, Leonardo; Torres-Castro, Cecil; Qian, Jiang; Bonaventura, Joseph; Boeke, Jef D; Yap, Wendy Y; Pino, Ignacio; Eichinger, Daniel J; Zhu, Heng; Blackshaw, Seth | Molecular & cellular proteomics : MCP | 22307071 | 2012 Jun |
| Functional protein microarray as molecular decathlete: a versatile player in clinical proteomics. | Zhu, Heng; Cox, Eric; Qian, Jiang | Proteomics. Clinical applications | 23027439 | 2012 Dec |
| A roadmap to generate renewable protein binders to the human proteome. | Colwill, Karen; Renewable Protein Binder Working Group; Gräslund, Susanne | Nature methods | 21572409 | 2011 May 15 |
