NIH Director's Pioneer Award
NIH Director's Pioneer Award
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Author | Journal Name | PubMedID | Journal Abbreviation | Publication Date | PubMedLink |
|---|---|---|---|---|---|---|
| Metabolic plasticity drives development during mammalian embryogenesis. | Sharpley MS, Chi F, Hoeve JT, Banerjee U | Developmental cell | 34428399 | Dev Cell | 2021 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/34428399 |
| Glycolysis-Independent Glucose Metabolism Distinguishes TE from ICM Fate during Mammalian Embryogenesis. | Chi F, Sharpley MS, Nagaraj R, Roy SS, Banerjee U | Developmental cell | 32197068 | Dev Cell | 2020 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/32197068 |
| Reversible switching between epigenetic states in honeybee behavioral subcastes. | Herb BR, Wolschin F, Hansen KD, Aryee MJ, Langmead B, Irizarry R, Amdam GV, Feinberg AP | Nature neuroscience | 22983211 | Nat Neurosci | 2012 Oct | https://www.ncbi.nlm.nih.gov/pubmed/22983211 |
| Regulated noise in the epigenetic landscape of development and disease. | Pujadas E, Feinberg AP | Cell | 22424224 | Cell | 2012 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/22424224 |
| The glove-like structure of the conserved membrane protein TatC provides insight into signal sequence recognition in twin-arginine translocation. | Ramasamy S, Abrol R, Suloway CJ, Clemons WM Jr | Structure (London, England : 1993) | 23583035 | Structure | 2013 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/23583035 |
| Minimal requirements for inhibition of MraY by lysis protein E from bacteriophage ΦX174. | Tanaka S, Clemons WM Jr | Molecular microbiology | 22742425 | Mol Microbiol | 2012 Sep | https://www.ncbi.nlm.nih.gov/pubmed/22742425 |
| The evolution of bacterial mechanosensitive channels. | Booth IR, Miller S, Müller A, Lehtovirta-Morley L | Cell calcium | 25591932 | Cell Calcium | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/25591932 |
| Principles of connectivity among morphologically defined cell types in adult neocortex. | Jiang X, Shen S, Cadwell CR, Berens P, Sinz F, Ecker AS, Patel S, Tolias AS | Science (New York, N.Y.) | 26612957 | Science | 2015 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/26612957 |
| On the Structure of Neuronal Population Activity under Fluctuations in Attentional State. | Ecker AS, Denfield GH, Bethge M, Tolias AS | The Journal of neuroscience : the official journal of the Society for Neuroscience | 26843656 | J Neurosci | 2016 Feb 3 | https://www.ncbi.nlm.nih.gov/pubmed/26843656 |
| Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq. | Cadwell CR, Scala F, Li S, Livrizzi G, Shen S, Sandberg R, Jiang X, Tolias AS | Nature protocols | 29189773 | Nat Protoc | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/29189773 |
| Waking State: Rapid Variations Modulate Neural and Behavioral Responses. | McGinley MJ, Vinck M, Reimer J, Batista-Brito R, Zagha E, Cadwell CR, Tolias AS, Cardin JA, McCormick DA | Neuron | 26402600 | Neuron | 2015 Sep 23 | https://www.ncbi.nlm.nih.gov/pubmed/26402600 |
| Pupil fluctuations track fast switching of cortical states during quiet wakefulness. | Reimer J, Froudarakis E, Cadwell CR, Yatsenko D, Denfield GH, Tolias AS | Neuron | 25374359 | Neuron | 2014 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/25374359 |
| Improved estimation and interpretation of correlations in neural circuits. | Yatsenko D, Josić K, Ecker AS, Froudarakis E, Cotton RJ, Tolias AS | PLoS computational biology | 25826696 | PLoS Comput Biol | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/25826696 |
| Learning divisive normalization in primary visual cortex. | Burg MF, Cadena SA, Denfield GH, Walker EY, Tolias AS, Bethge M, Ecker AS | PLoS computational biology | 34097695 | PLoS Comput Biol | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34097695 |
| Benchmarking Spike Rate Inference in Population Calcium Imaging. | Theis L, Berens P, Froudarakis E, Reimer J, Román Rosón M, Baden T, Euler T, Tolias AS, Bethge M | Neuron | 27151639 | Neuron | 2016 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/27151639 |
| Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq. | Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Bethge M, Tolias KF, Sandberg R, Tolias AS | Nature biotechnology | 26689543 | Nat Biotechnol | 2016 Feb | https://www.ncbi.nlm.nih.gov/pubmed/26689543 |
| Attentional fluctuations induce shared variability in macaque primary visual cortex. | Denfield GH, Ecker AS, Shinn TJ, Bethge M, Tolias AS | Nature communications | 29985411 | Nat Commun | 2018 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/29985411 |
| Deep convolutional models improve predictions of macaque V1 responses to natural images. | Cadena SA, Denfield GH, Walker EY, Gatys LA, Tolias AS, Bethge M, Ecker AS | PLoS computational biology | 31013278 | PLoS Comput Biol | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/31013278 |
| Population code in mouse V1 facilitates readout of natural scenes through increased sparseness. | Froudarakis E, Berens P, Ecker AS, Cotton RJ, Sinz FH, Yatsenko D, Saggau P, Bethge M, Tolias AS | Nature neuroscience | 24747577 | Nat Neurosci | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24747577 |
| Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex. | Reimer J, McGinley MJ, Liu Y, Rodenkirch C, Wang Q, McCormick DA, Tolias AS | Nature communications | 27824036 | Nat Commun | 2016 Nov 8 | https://www.ncbi.nlm.nih.gov/pubmed/27824036 |
| Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex. | Cadwell CR, Scala F, Fahey PG, Kobak D, Mulherkar S, Sinz FH, Papadopoulos S, Tan ZH, Johnsson P, Hartmanis L, Li S, Cotton RJ, Tolias KF, Sandberg R, Berens P, Jiang X, Tolias AS | eLife | 32134385 | Elife | 2020 Mar 5 | https://www.ncbi.nlm.nih.gov/pubmed/32134385 |
| Perspectives on best practices for gene therapy programs. | Cheever TR, Berkley D, Braun S, Brown RH, Byrne BJ, Chamberlain JS, Cwik V, Duan D, Federoff HJ, High KA, Kaspar BK, Klinger KW, Larkindale J, Lincecum J, Mavilio F, McDonald CL, McLaughlin J, Weiss McLeod B, Mendell JR, Nuckolls G, Stedman HH, Tagle DA, Vandenberghe LH, Wang H, Wernett PJ, Wilson JM, Porter JD, Gubitz AK | Human gene therapy | 25654329 | Hum Gene Ther | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/25654329 |
| Retinal gene therapy coming of age. | Cepko CL, Vandenberghe LH | Human gene therapy | 23458444 | Hum Gene Ther | 2013 Mar | https://www.ncbi.nlm.nih.gov/pubmed/23458444 |
| AAV9 targets cone photoreceptors in the nonhuman primate retina. | Vandenberghe LH, Bell P, Maguire AM, Xiao R, Hopkins TB, Grant R, Bennett J, Wilson JM | PloS one | 23382846 | PLoS One | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23382846 |
| Efficient transduction and optogenetic stimulation of retinal bipolar cells by a synthetic adeno-associated virus capsid and promoter. | Cronin T, Vandenberghe LH, Hantz P, Juttner J, Reimann A, Kacsó AE, Huckfeldt RM, Busskamp V, Kohler H, Lagali PS, Roska B, Bennett J | EMBO molecular medicine | 25092770 | EMBO Mol Med | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25092770 |
| In Silico Reconstruction of the Viral Evolutionary Lineage Yields a Potent Gene Therapy Vector. | Zinn E, Pacouret S, Khaychuk V, Turunen HT, Carvalho LS, Andres-Mateos E, Shah S, Shelke R, Maurer AC, Plovie E, Xiao R, Vandenberghe LH | Cell reports | 26235624 | Cell Rep | 2015 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/26235624 |
| Basal exon skipping and genetic pleiotropy: A predictive model of disease pathogenesis. | Drivas TG, Wojno AP, Tucker BA, Stone EM, Bennett J | Science translational medicine | 26062849 | Sci Transl Med | 2015 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/26062849 |
| A synthetic AAV vector enables safe and efficient gene transfer to the mammalian inner ear. | Landegger LD, Pan B, Askew C, Wassmer SJ, Gluck SD, Galvin A, Taylor R, Forge A, Stankovic KM, Holt JR, Vandenberghe LH | Nature biotechnology | 28165475 | Nat Biotechnol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28165475 |
| The Assembly-Activating Protein Promotes Stability and Interactions between AAV's Viral Proteins to Nucleate Capsid Assembly. | Maurer AC, Pacouret S, Cepeda Diaz AK, Blake J, Andres-Mateos E, Vandenberghe LH | Cell reports | 29742436 | Cell Rep | 2018 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/29742436 |
| Restoration of Vision and Retinal Responses After Adeno-Associated Virus-Mediated Optogenetic Therapy in Blind Dogs. | Nikonov S, Aravand P, Lyubarsky A, Nikonov R, Luo AJ, Wei Z, Maguire AM, Phelps NT, Shpylchak I, Willett K, Aleman TS, Huckfeldt RM, Ramachandran PS, Bennett J | Translational vision science & technology | 35604672 | Transl Vis Sci Technol | 2022 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/35604672 |
| Gene delivery to the retina: from mouse to man. | Bennett J, Chung DC, Maguire A | Methods in enzymology | 22365778 | Methods Enzymol | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22365778 |
| Controlling AAV Tropism in the Nervous System with Natural and Engineered Capsids. | Castle MJ, Turunen HT, Vandenberghe LH, Wolfe JH | Methods in molecular biology (Clifton, N.J.) | 26611584 | Methods Mol Biol | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26611584 |
| Promising and delivering gene therapies for vision loss. | Carvalho LS, Vandenberghe LH | Vision research | 25094052 | Vision Res | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/25094052 |
| What Is Next for Retinal Gene Therapy? | Vandenberghe LH | Cold Spring Harbor perspectives in medicine | 25877395 | Cold Spring Harb Perspect Med | 2015 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/25877395 |
| In vitro and in vivo rescue of aberrant splicing in CEP290-associated LCA by antisense oligonucleotide delivery. | Garanto A, Chung DC, Duijkers L, Corral-Serrano JC, Messchaert M, Xiao R, Bennett J, Vandenberghe LH, Collin RW | Human molecular genetics | 27106101 | Hum Mol Genet | 2016 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/27106101 |
| Adeno-associated virus: fit to serve. | Zinn E, Vandenberghe LH | Current opinion in virology | 25128609 | Curr Opin Virol | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25128609 |
| Structured Variability in Purkinje Cell Activity during Locomotion. | Sauerbrei BA, Lubenov EV, Siapas AG | Neuron | 26291165 | Neuron | 2015 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/26291165 |
| Spatial tuning and brain state account for dorsal hippocampal CA1 activity in a non-spatial learning task. | Shan KQ, Lubenov EV, Papadopoulou M, Siapas AG | eLife | 27487561 | Elife | 2016 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/27487561 |
| Nanofabricated Neural Probes for Dense 3-D Recordings of Brain Activity. | Rios G, Lubenov EV, Chi D, Roukes ML, Siapas AG | Nano letters | 27766885 | Nano Lett | 2016 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/27766885 |
| Brain State Dependence of Hippocampal Subthreshold Activity in Awake Mice. | Hulse BK, Lubenov EV, Siapas AG | Cell reports | 28052244 | Cell Rep | 2017 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/28052244 |
| Model-based spike sorting with a mixture of drifting t-distributions. | Shan KQ, Lubenov EV, Siapas AG | Journal of neuroscience methods | 28652008 | J Neurosci Methods | 2017 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/28652008 |
| Membrane Potential Dynamics of CA1 Pyramidal Neurons during Hippocampal Ripples in Awake Mice. | Hulse BK, Moreaux LC, Lubenov EV, Siapas AG | Neuron | 26889811 | Neuron | 2016 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/26889811 |
| Endogenous Retroviral Envelope Syncytin Induces HIV-1 Spreading and Establishes HIV Reservoirs in Placenta. | Tang Y, Woodward BO, Pastor L, George AM, Petrechko O, Nouvet FJ, Haas DW, Jiang G, Hildreth JEK | Cell reports | 32234485 | Cell Rep | 2020 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/32234485 |
| Large-scale imaging in small brains. | Ahrens MB, Engert F | Current opinion in neurobiology | 25636154 | Curr Opin Neurobiol | 2015 Jun | https://www.ncbi.nlm.nih.gov/pubmed/25636154 |
| Spinal projection neurons control turning behaviors in zebrafish. | Huang KH, Ahrens MB, Dunn TW, Engert F | Current biology : CB | 23910662 | Curr Biol | 2013 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/23910662 |
| Bipolar cell-photoreceptor connectivity in the zebrafish (Danio rerio) retina. | Li YN, Tsujimura T, Kawamura S, Dowling JE | The Journal of comparative neurology | 22907678 | J Comp Neurol | 2012 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/22907678 |
| Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish. | Dunn TW, Gebhardt C, Naumann EA, Riegler C, Ahrens MB, Engert F, Del Bene F | Neuron | 26804997 | Neuron | 2016 Feb 3 | https://www.ncbi.nlm.nih.gov/pubmed/26804997 |
| Navigational strategies underlying phototaxis in larval zebrafish. | Chen X, Engert F | Frontiers in systems neuroscience | 24723859 | Front Syst Neurosci | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24723859 |
| A compressed sensing framework for efficient dissection of neural circuits. | Lee JB, Yonar A, Hallacy T, Shen CH, Milloz J, Srinivasan J, Kocabas A, Ramanathan S | Nature methods | 30573831 | Nat Methods | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30573831 |
| Pluripotency factors in embryonic stem cells regulate differentiation into germ layers. | Thomson M, Liu SJ, Zou LN, Smith Z, Meissner A, Ramanathan S | Cell | 21663792 | Cell | 2011 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/21663792 |
| Identification of the long, edited dsRNAome of LPS-stimulated immune cells. | Blango MG, Bass BL | Genome research | 27197207 | Genome Res | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27197207 |
| Drosophila dicer-2 cleavage is mediated by helicase- and dsRNA termini-dependent states that are modulated by Loquacious-PD. | Sinha NK, Trettin KD, Aruscavage PJ, Bass BL | Molecular cell | 25891075 | Mol Cell | 2015 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/25891075 |
| Potential role for snoRNAs in PKR activation during metabolic stress. | Youssef OA, Safran SA, Nakamura T, Nix DA, Hotamisligil GS, Bass BL | Proceedings of the National Academy of Sciences of the United States of America | 25848059 | Proc Natl Acad Sci U S A | 2015 Apr 21 | https://www.ncbi.nlm.nih.gov/pubmed/25848059 |
| Genome-wide profiling of the C. elegans dsRNAome. | Whipple JM, Youssef OA, Aruscavage PJ, Nix DA, Hong C, Johnson WE, Bass BL | RNA (New York, N.Y.) | 25805852 | RNA | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25805852 |
| Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress. | Saikia M, Krokowski D, Guan BJ, Ivanov P, Parisien M, Hu GF, Anderson P, Pan T, Hatzoglou M | The Journal of biological chemistry | 23086926 | J Biol Chem | 2012 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/23086926 |
| Disease tolerance as a defense strategy. | Medzhitov R, Schneider DS, Soares MP | Science (New York, N.Y.) | 22363001 | Science | 2012 Feb 24 | https://www.ncbi.nlm.nih.gov/pubmed/22363001 |
| How the fly balances its ability to combat different pathogens. | Chambers MC, Lightfield KL, Schneider DS | PLoS pathogens | 23271964 | PLoS Pathog | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/23271964 |
| Tolerance of infections. | Ayres JS, Schneider DS | Annual review of immunology | 22224770 | Annu Rev Immunol | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22224770 |
| Tracing personalized health curves during infections. | Schneider DS | PLoS biology | 21957398 | PLoS Biol | 2011 Sep | https://www.ncbi.nlm.nih.gov/pubmed/21957398 |
| Guided Homing of Cells in Multi-Photon Microfabricated Bioscaffolds. | Skylar-Scott MA, Liu MC, Wu Y, Dixit A, Yanik MF | Advanced healthcare materials | 27059425 | Adv Healthc Mater | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27059425 |
| Cholinergic Signaling Controls Conditioned Fear Behaviors and Enhances Plasticity of Cortical-Amygdala Circuits. | Jiang L, Kundu S, Lederman JD, López-Hernández GY, Ballinger EC, Wang S, Talmage DA, Role LW | Neuron | 27161525 | Neuron | 2016 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/27161525 |
| Electrophysiological properties of basal forebrain cholinergic neurons identified by genetic and optogenetic tagging. | López-Hernández GY, Ananth M, Jiang L, Ballinger EC, Talmage DA, Role LW | Journal of neurochemistry | 28791701 | J Neurochem | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28791701 |
| Targeted gene knockout by direct delivery of zinc-finger nuclease proteins. | Gaj T, Guo J, Kato Y, Sirk SJ, Barbas CF 3rd | Nature methods | 22751204 | Nat Methods | 2012 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/22751204 |
| Structural characterization of anti-inflammatory immunoglobulin G Fc proteins. | Ahmed AA, Giddens J, Pincetic A, Lomino JV, Ravetch JV, Wang LX, Bjorkman PJ | Journal of molecular biology | 25036289 | J Mol Biol | 2014 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/25036289 |
| Intra-spike crosslinking overcomes antibody evasion by HIV-1. | Galimidi RP, Klein JS, Politzer MS, Bai S, Seaman MS, Nussenzweig MC, West AP Jr, Bjorkman PJ | Cell | 25635457 | Cell | 2015 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/25635457 |
| Antibody engineering for increased potency, breadth and half-life. | Sievers SA, Scharf L, West AP Jr, Bjorkman PJ | Current opinion in HIV and AIDS | 25760931 | Curr Opin HIV AIDS | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25760931 |
| Structural insights on the role of antibodies in HIV-1 vaccine and therapy. | West AP Jr, Scharf L, Scheid JF, Klein F, Bjorkman PJ, Nussenzweig MC | Cell | 24529371 | Cell | 2014 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/24529371 |
| Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120. | West AP Jr, Diskin R, Nussenzweig MC, Bjorkman PJ | Proceedings of the National Academy of Sciences of the United States of America | 22745174 | Proc Natl Acad Sci U S A | 2012 Jul 24 | https://www.ncbi.nlm.nih.gov/pubmed/22745174 |
| Computational analysis of anti-HIV-1 antibody neutralization panel data to identify potential functional epitope residues. | West AP Jr, Scharf L, Horwitz J, Klein F, Nussenzweig MC, Bjorkman PJ | Proceedings of the National Academy of Sciences of the United States of America | 23754383 | Proc Natl Acad Sci U S A | 2013 Jun 25 | https://www.ncbi.nlm.nih.gov/pubmed/23754383 |
| Design and characterization of structured protein linkers with differing flexibilities. | Klein JS, Jiang S, Galimidi RP, Keeffe JR, Bjorkman PJ | Protein engineering, design & selection : PEDS | 25301959 | Protein Eng Des Sel | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25301959 |
| Approach for targeting Ras with small molecules that activate SOS-mediated nucleotide exchange. | Burns MC, Sun Q, Daniels RN, Camper D, Kennedy JP, Phan J, Olejniczak ET, Lee T, Waterson AG, Rossanese OW, Fesik SW | Proceedings of the National Academy of Sciences of the United States of America | 24550516 | Proc Natl Acad Sci U S A | 2014 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/24550516 |
| Surface reengineering of RPA70N enables cocrystallization with an inhibitor of the replication protein A interaction motif of ATR interacting protein. | Feldkamp MD, Frank AO, Kennedy JP, Patrone JD, Vangamudi B, Waterson AG, Fesik SW, Chazin WJ | Biochemistry | 23962067 | Biochemistry | 2013 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/23962067 |
| Discovery of a potent inhibitor of replication protein a protein-protein interactions using a fragment-linking approach. | Frank AO, Feldkamp MD, Kennedy JP, Waterson AG, Pelz NF, Patrone JD, Vangamudi B, Camper DV, Rossanese OW, Chazin WJ, Fesik SW | Journal of medicinal chemistry | 24147804 | J Med Chem | 2013 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/24147804 |
| Discovery of Protein-Protein Interaction Inhibitors of Replication Protein A. | Patrone JD, Kennedy JP, Frank AO, Feldkamp MD, Vangamudi B, Pelz NF, Rossanese OW, Waterson AG, Chazin WJ, Fesik SW | ACS medicinal chemistry letters | 23914285 | ACS Med Chem Lett | 2013 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/23914285 |
| Fragment-based drug discovery using NMR spectroscopy. | Harner MJ, Frank AO, Fesik SW | Journal of biomolecular NMR | 23686385 | J Biomol NMR | 2013 Jun | https://www.ncbi.nlm.nih.gov/pubmed/23686385 |
| Discovery of small molecules that bind to K-Ras and inhibit Sos-mediated activation. | Sun Q, Burke JP, Phan J, Burns MC, Olejniczak ET, Waterson AG, Lee T, Rossanese OW, Fesik SW | Angewandte Chemie (International ed. in English) | 22566140 | Angew Chem Int Ed Engl | 2012 Jun 18 | https://www.ncbi.nlm.nih.gov/pubmed/22566140 |
| Fragment Optimization of Reversible Binding to the Switch II Pocket on KRAS Leads to a Potent, In Vivo Active KRAS(G12C) Inhibitor. | Bröker J, Waterson AG, Smethurst C, Kessler D, Böttcher J, Mayer M, Gmaschitz G, Phan J, Little A, Abbott JR, Sun Q, Gmachl M, Rudolph D, Arnhof H, Rumpel K, Savarese F, Gerstberger T, Mischerikow N, Treu M, Herdeis L, Wunberg T, Gollner A, Weinstabl H, Mantoulidis A, Krämer O, McConnell DB, W Fesik S | Journal of medicinal chemistry | 36300829 | J Med Chem | 2022 Nov 10 | https://www.ncbi.nlm.nih.gov/pubmed/36300829 |
| Discovery of Quinazolines That Activate SOS1-Mediated Nucleotide Exchange on RAS. | Abbott JR, Patel PA, Howes JE, Akan DT, Kennedy JP, Burns MC, Browning CF, Sun Q, Rossanese OW, Phan J, Waterson AG, Fesik SW | ACS medicinal chemistry letters | 30258545 | ACS Med Chem Lett | 2018 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/30258545 |
| MYC and MCL1 Cooperatively Promote Chemotherapy-Resistant Breast Cancer Stem Cells via Regulation of Mitochondrial Oxidative Phosphorylation. | Lee KM, Giltnane JM, Balko JM, Schwarz LJ, Guerrero-Zotano AL, Hutchinson KE, Nixon MJ, Estrada MV, Sánchez V, Sanders ME, Lee T, Gómez H, Lluch A, Pérez-Fidalgo JA, Wolf MM, Andrejeva G, Rathmell JC, Fesik SW, Arteaga CL | Cell metabolism | 28978427 | Cell Metab | 2017 Oct 3 | https://www.ncbi.nlm.nih.gov/pubmed/28978427 |
| Discovery of potent myeloid cell leukemia 1 (Mcl-1) inhibitors using fragment-based methods and structure-based design. | Friberg A, Vigil D, Zhao B, Daniels RN, Burke JP, Garcia-Barrantes PM, Camper D, Chauder BA, Lee T, Olejniczak ET, Fesik SW | Journal of medicinal chemistry | 23244564 | J Med Chem | 2013 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/23244564 |
| A method for the second-site screening of K-Ras in the presence of a covalently attached first-site ligand. | Sun Q, Phan J, Friberg AR, Camper DV, Olejniczak ET, Fesik SW | Journal of biomolecular NMR | 25087006 | J Biomol NMR | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25087006 |
| Drugging the undruggable RAS: Mission possible? | Cox AD, Fesik SW, Kimmelman AC, Luo J, Der CJ | Nature reviews. Drug discovery | 25323927 | Nat Rev Drug Discov | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25323927 |
| Discovery of tricyclic indoles that potently inhibit Mcl-1 using fragment-based methods and structure-based design. | Burke JP, Bian Z, Shaw S, Zhao B, Goodwin CM, Belmar J, Browning CF, Vigil D, Friberg A, Camper DV, Rossanese OW, Lee T, Olejniczak ET, Fesik SW | Journal of medicinal chemistry | 25844895 | J Med Chem | 2015 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/25844895 |
| Interaction with WDR5 promotes target gene recognition and tumorigenesis by MYC. | Thomas LR, Wang Q, Grieb BC, Phan J, Foshage AM, Sun Q, Olejniczak ET, Clark T, Dey S, Lorey S, Alicie B, Howard GC, Cawthon B, Ess KC, Eischen CM, Zhao Z, Fesik SW, Tansey WP | Molecular cell | 25818646 | Mol Cell | 2015 May 7 | https://www.ncbi.nlm.nih.gov/pubmed/25818646 |
| Discovery of Sulfonamide-Derived Agonists of SOS1-Mediated Nucleotide Exchange on RAS Using Fragment-Based Methods. | Sarkar D, Olejniczak ET, Phan J, Coker JA, Sai J, Arnold A, Beesetty Y, Waterson AG, Fesik SW | Journal of medicinal chemistry | 32673492 | J Med Chem | 2020 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/32673492 |
| A high-throughput fluorescence polarization anisotropy assay for the 70N domain of replication protein A. | Souza-Fagundes EM, Frank AO, Feldkamp MD, Dorset DC, Chazin WJ, Rossanese OW, Olejniczak ET, Fesik SW | Analytical biochemistry | 22197419 | Anal Biochem | 2012 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/22197419 |
| Discovery of 2-Indole-acylsulfonamide Myeloid Cell Leukemia 1 (Mcl-1) Inhibitors Using Fragment-Based Methods. | Pelz NF, Bian Z, Zhao B, Shaw S, Tarr JC, Belmar J, Gregg C, Camper DV, Goodwin CM, Arnold AL, Sensintaffar JL, Friberg A, Rossanese OW, Lee T, Olejniczak ET, Fesik SW | Journal of medicinal chemistry | 26878343 | J Med Chem | 2016 Mar 10 | https://www.ncbi.nlm.nih.gov/pubmed/26878343 |
| Identification and Optimization of Anthranilic Acid Based Inhibitors of Replication Protein A. | Patrone JD, Pelz NF, Bates BS, Souza-Fagundes EM, Vangamudi B, Camper DV, Kuznetsov AG, Browning CF, Feldkamp MD, Frank AO, Gilston BA, Olejniczak ET, Rossanese OW, Waterson AG, Chazin WJ, Fesik SW | ChemMedChem | 26748787 | ChemMedChem | 2016 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/26748787 |
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| LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates. | Moughon SE, Samudrala R | BMC bioinformatics | 21920038 | BMC Bioinformatics | 2011 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/21920038 |
| Structure prediction of partial-length protein sequences. | Laurenzi A, Hung LH, Samudrala R | International journal of molecular sciences | 23867606 | Int J Mol Sci | 2013 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/23867606 |
| Homo-dimerization and ligand binding by the leucine-rich repeat domain at RHG1/RFS2 underlying resistance to two soybean pathogens. | Afzal AJ, Srour A, Goil A, Vasudaven S, Liu T, Samudrala R, Dogra N, Kohli P, Malakar A, Lightfoot DA | BMC plant biology | 23497186 | BMC Plant Biol | 2013 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/23497186 |
| CANDOCK: Chemical Atomic Network-Based Hierarchical Flexible Docking Algorithm Using Generalized Statistical Potentials. | Fine J, Konc J, Samudrala R, Chopra G | Journal of chemical information and modeling | 32069042 | J Chem Inf Model | 2020 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/32069042 |
| Optimal COVID-19 therapeutic candidate discovery using the CANDO platform. | Mangione W, Falls Z, Samudrala R | Frontiers in pharmacology | 36091793 | Front Pharmacol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36091793 |
| Multiscale modelling of relationships between protein classes and drug behavior across all diseases using the CANDO platform. | Sethi G, Chopra G, Samudrala R | Mini reviews in medicinal chemistry | 25694071 | Mini Rev Med Chem | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25694071 |
| The Promise and Challenge of Digital Biology. | Minie ME, Samudrala R | Journal of bioengineering & biomedical science | 30338132 | J Bioeng Biomed Sci | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/30338132 |
| Linking Genome and Exposome: Computational Analysis of Human Variation in Chemical-Target Interactions. | Bruggemann L, Hawthorne C, Samudrala R, Lopez-Campos GH | Studies in health technology and informatics | 32570644 | Stud Health Technol Inform | 2020 Jun 16 | https://www.ncbi.nlm.nih.gov/pubmed/32570644 |
| Shotgun drug repurposing biotechnology to tackle epidemics and pandemics. | Mangione W, Falls Z, Melendy T, Chopra G, Samudrala R | Drug discovery today | 32405249 | Drug Discov Today | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32405249 |
| Accurate Prediction of Inhibitor Binding to HIV-1 Protease Using CANDOCK. | Falls Z, Fine J, Chopra G, Samudrala R | Frontiers in chemistry | 35111726 | Front Chem | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/35111726 |
| Multiscale Analysis and Validation of Effective Drug Combinations Targeting Driver KRAS Mutations in Non-Small Cell Lung Cancer. | Bruggemann L, Falls Z, Mangione W, Schwartz SA, Battaglia S, Aalinkeel R, Mahajan SD, Samudrala R | International journal of molecular sciences | 36674513 | Int J Mol Sci | 2023 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/36674513 |
| Antiviral Approaches against Influenza Virus. | Kumari R, Sharma SD, Kumar A, Ende Z, Mishina M, Wang Y, Falls Z, Samudrala R, Pohl J, Knight PR, Sambhara S | Clinical microbiology reviews | 36645300 | Clin Microbiol Rev | 2023 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/36645300 |
| Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications. | Fine J, Lackner R, Samudrala R, Chopra G | Scientific reports | 31511563 | Sci Rep | 2019 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/31511563 |
| Computational Grafting of Epitopes. | Manish M, Mishra S, Pahuja M, Anand A, Subbarao N, Samudrala R | Methods in molecular biology (Clifton, N.J.) | 37258909 | Methods Mol Biol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37258909 |
| Accurate informatic modeling of tooth enamel pellicle interactions by training substitution matrices with Mat4Pep. | Keeper JH, Seto J, Oren EE, Horst OV, Hung LH, Samudrala R | Frontiers in materials | 40756065 | Front Mater | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/40756065 |
| Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils. | Martinez-Avila O, Wu S, Kim SJ, Cheng Y, Khan F, Samudrala R, Sali A, Horst JA, Habelitz S | Biomacromolecules | 22974364 | Biomacromolecules | 2012 Nov 12 | https://www.ncbi.nlm.nih.gov/pubmed/22974364 |
| Cementomimetics-constructing a cementum-like biomineralized microlayer via amelogenin-derived peptides. | Gungormus M, Oren EE, Horst JA, Fong H, Hnilova M, Somerman MJ, Snead ML, Samudrala R, Tamerler C, Sarikaya M | International journal of oral science | 22743342 | Int J Oral Sci | 2012 Jun | https://www.ncbi.nlm.nih.gov/pubmed/22743342 |
| Exploring Polypharmacology in Drug Discovery and Repurposing Using the CANDO Platform. | Chopra G, Samudrala R | Current pharmaceutical design | 27013226 | Curr Pharm Des | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27013226 |
| cando.py: Open Source Software for Predictive Bioanalytics of Large Scale Drug-Protein-Disease Data. | Mangione W, Falls Z, Chopra G, Samudrala R | Journal of chemical information and modeling | 32515949 | J Chem Inf Model | 2020 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/32515949 |
| Association of C>U RNA Editing with Human Disease Variants. | Mandloi S, Falls Z, Deng R, Samudrala R, Elkin PL | Studies in health technology and informatics | 32570581 | Stud Health Technol Inform | 2020 Jun 16 | https://www.ncbi.nlm.nih.gov/pubmed/32570581 |
| Rv0100, a proposed acyl carrier protein in Mycobacterium tuberculosis: expression, purification and crystallization. Corrigendum. | Bondoc JMG, Gutka HJ, Almutairi MM, Patwell R, Rutter MW, Wolf NM, Samudrala R, Mehboob S, Dementiev A, Abad-Zapatero C, Movahedzadeh F | Acta crystallographica. Section F, Structural biology communications | 32254053 | Acta Crystallogr F Struct Biol Commun | 2020 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/32254053 |
| A synthetic small molecule stalls pre-mRNA splicing by promoting an early-stage U2AF2-RNA complex. | Chatrikhi R, Feeney CF, Pulvino MJ, Alachouzos G, MacRae AJ, Falls Z, Rai S, Brennessel WW, Jenkins JL, Walter MJ, Graubert TA, Samudrala R, Jurica MS, Frontier AJ, Kielkopf CL | Cell chemical biology | 33689684 | Cell Chem Biol | 2021 Aug 19 | https://www.ncbi.nlm.nih.gov/pubmed/33689684 |
| Multiscale Virtual Screening Optimization for Shotgun Drug Repurposing Using the CANDO Platform. | Hudson ML, Samudrala R | Molecules (Basel, Switzerland) | 33925237 | Molecules | 2021 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/33925237 |
| Combating Ebola with Repurposed Therapeutics Using the CANDO Platform. | Chopra G, Kaushik S, Elkin PL, Samudrala R | Molecules (Basel, Switzerland) | 27898018 | Molecules | 2016 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/27898018 |
| Evaluating the performance of drug-repurposing technologies. | Schuler J, Falls Z, Mangione W, Hudson ML, Bruggemann L, Samudrala R | Drug discovery today | 34400352 | Drug Discov Today | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34400352 |
| A Deep-Learning Proteomic-Scale Approach for Drug Design. | Overhoff B, Falls Z, Mangione W, Samudrala R | Pharmaceuticals (Basel, Switzerland) | 34959678 | Pharmaceuticals (Basel) | 2021 Dec 7 | https://www.ncbi.nlm.nih.gov/pubmed/34959678 |
| Proteomic Network Analysis of Bronchoalveolar Lavage Fluid in Ex-Smokers to Discover Implicated Protein Targets and Novel Drug Treatments for Chronic Obstructive Pulmonary Disease. | Mammen MJ, Tu C, Morris MC, Richman S, Mangione W, Falls Z, Qu J, Broderick G, Sethi S, Samudrala R | Pharmaceuticals (Basel, Switzerland) | 35631392 | Pharmaceuticals (Basel) | 2022 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/35631392 |
| Strategies for robust, accurate, and generalizable benchmarking of drug discovery platforms. | Van Norden M, Mangione W, Falls Z, Samudrala R | Bioinformatics (Oxford, England) | 41206130 | Bioinformatics | 2025 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/41206130 |
| A Systematic Review of Computational Drug Discovery, Development, and Repurposing for Ebola Virus Disease Treatment. | Schuler J, Hudson ML, Schwartz D, Samudrala R | Molecules (Basel, Switzerland) | 29053626 | Molecules | 2017 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/29053626 |
| Exploration of interaction scoring criteria in the CANDO platform. | Falls Z, Mangione W, Schuler J, Samudrala R | BMC research notes | 31174591 | BMC Res Notes | 2019 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/31174591 |
| Fingerprinting CANDO: Increased Accuracy with Structure- and Ligand-Based Shotgun Drug Repurposing. | Schuler J, Samudrala R | ACS omega | 31656912 | ACS Omega | 2019 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/31656912 |
| Shotgun drug repurposing biotechnology to tackle epidemics and pandemics. | Mangione W, Falls Z, Melendy T, Chopra G, Samudrala R | ChemRxiv : the preprint server for chemistry | 32511286 | ChemRxiv | 2020 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/32511286 |
| Identifying Protein Features and Pathways Responsible for Toxicity Using Machine Learning and Tox21: Implications for Predictive Toxicology. | Moukheiber L, Mangione W, Moukheiber M, Maleki S, Falls Z, Gao M, Samudrala R | Molecules (Basel, Switzerland) | 35566372 | Molecules | 2022 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/35566372 |
| Protein mimetic amyloid inhibitor potently abrogates cancer-associated mutant p53 aggregation and restores tumor suppressor function. | Palanikumar L, Karpauskaite L, Al-Sayegh M, Chehade I, Alam M, Hassan S, Maity D, Ali L, Kalmouni M, Hunashal Y, Ahmed J, Houhou T, Karapetyan S, Falls Z, Samudrala R, Pasricha R, Esposito G, Afzal AJ, Hamilton AD, Kumar S, Magzoub M | Nature communications | 34172723 | Nat Commun | 2021 Jun 25 | https://www.ncbi.nlm.nih.gov/pubmed/34172723 |
| The impact of nucleosome structure on CRISPR/Cas9 fidelity. | Handelmann CR, Tsompana M, Samudrala R, Buck MJ | Nucleic acids research | 36727449 | Nucleic Acids Res | 2023 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/36727449 |
| Strategies for robust, accurate, and generalizable benchmarking of drug discovery platforms. | Norden MV, Mangione W, Falls Z, Samudrala R | bioRxiv : the preprint server for biology | 39764006 | bioRxiv | 2025 Aug 11 | https://www.ncbi.nlm.nih.gov/pubmed/39764006 |
| Uncovering novel therapeutics for schizophrenia: a multitarget approach using the CANDO platform. | Hu Y, Elefteriou K, Falls Z, Samudrala R | bioRxiv : the preprint server for biology | 41676525 | bioRxiv | 2026 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/41676525 |
| Deciphering bisphenol A (BPA)-elicited osteoarthritis mechanisms through network toxicology and molecular docking, then de novo generation of novel therapeutic candidates. | Xu S, Jiang L, Zhang Z, Luo X, Wu W, Wu H, Huang Z, Falls Z, Samudrala R, Tan Z | BMC pharmacology & toxicology | 41408581 | BMC Pharmacol Toxicol | 2025 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/41408581 |
| Strategic protein target analysis for developing drugs to stop dental caries. | Horst JA, Pieper U, Sali A, Zhan L, Chopra G, Samudrala R, Featherstone JD | Advances in dental research | 22899687 | Adv Dent Res | 2012 Sep | https://www.ncbi.nlm.nih.gov/pubmed/22899687 |
| Accelerated protein structure comparison using TM-score-GPU. | Hung LH, Samudrala R | Bioinformatics (Oxford, England) | 22718788 | Bioinformatics | 2012 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/22718788 |
| The enzymatic and metabolic capabilities of early life. | Goldman AD, Baross JA, Samudrala R | PloS one | 22970111 | PLoS One | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22970111 |
| CANDO and the infinite drug discovery frontier. | Minie M, Chopra G, Sethi G, Horst J, White G, Roy A, Hatti K, Samudrala R | Drug discovery today | 24980786 | Drug Discov Today | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/24980786 |
| Identifying Protein Features Responsible for Improved Drug Repurposing Accuracies Using the CANDO Platform: Implications for Drug Design. | Mangione W, Samudrala R | Molecules (Basel, Switzerland) | 30621144 | Molecules | 2019 Jan 4 | https://www.ncbi.nlm.nih.gov/pubmed/30621144 |
| Rv0100, a proposed acyl carrier protein in Mycobacterium tuberculosis: expression, purification and crystallization. | Bondoc JMG, Gutka HJ, Almutairi MM, Patwell R, Rutter MW, Wolf NM, Samudrala R, Mehboob S, Movahedzadeh F | Acta crystallographica. Section F, Structural biology communications | 31584013 | Acta Crystallogr F Struct Biol Commun | 2019 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/31584013 |
| A fluorescence-based, gain-of-signal, live cell system to evaluate SARS-CoV-2 main protease inhibition. | Dey-Rao R, Smith GR, Timilsina U, Falls Z, Samudrala R, Stavrou S, Melendy T | Antiviral research | 34626674 | Antiviral Res | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34626674 |
| Multiscale analysis and optimal glioma therapeutic candidate discovery using the CANDO platform. | Xu S, Mangione W, Van Norden M, Elefteriou K, Hu Y, Falls Z, Samudrala R | bioRxiv : the preprint server for biology | 40475540 | bioRxiv | 2025 May 23 | https://www.ncbi.nlm.nih.gov/pubmed/40475540 |
| Genetic structure in African populations: implications for human demographic history. | Lambert CA, Tishkoff SA | Cold Spring Harbor symposia on quantitative biology | 20453204 | Cold Spring Harb Symp Quant Biol | 2009 | https://www.ncbi.nlm.nih.gov/pubmed/20453204 |
| The evolution of human genetic and phenotypic variation in Africa. | Campbell MC, Tishkoff SA | Current biology : CB | 20178763 | Curr Biol | 2010 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/20178763 |
| Evidence from Cameroon reveals differences in the genetic structure and histories of chimpanzee populations. | Gonder MK, Locatelli S, Ghobrial L, Mitchell MW, Kujawski JT, Lankester FJ, Stewart CB, Tishkoff SA | Proceedings of the National Academy of Sciences of the United States of America | 21368170 | Proc Natl Acad Sci U S A | 2011 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/21368170 |
| Haplotype variation and genotype imputation in African populations. | Huang L, Jakobsson M, Pemberton TJ, Ibrahim M, Nyambo T, Omar S, Pritchard JK, Tishkoff SA, Rosenberg NA | Genetic epidemiology | 22125220 | Genet Epidemiol | 2011 Dec | https://www.ncbi.nlm.nih.gov/pubmed/22125220 |
| Obesity-susceptibility loci and the tails of the pediatric BMI distribution. | Mitchell JA, Hakonarson H, Rebbeck TR, Grant SF | Obesity (Silver Spring, Md.) | 23408508 | Obesity (Silver Spring) | 2013 Jun | https://www.ncbi.nlm.nih.gov/pubmed/23408508 |
| Evolution of functionally diverse alleles associated with PTC bitter taste sensitivity in Africa. | Campbell MC, Ranciaro A, Froment A, Hirbo J, Omar S, Bodo JM, Nyambo T, Lema G, Zinshteyn D, Drayna D, Breslin PA, Tishkoff SA | Molecular biology and evolution | 22130969 | Mol Biol Evol | 2012 Apr | https://www.ncbi.nlm.nih.gov/pubmed/22130969 |
| Effects of natural selection and gene conversion on the evolution of human glycophorins coding for MNS blood polymorphisms in malaria-endemic African populations. | Ko WY, Kaercher KA, Giombini E, Marcatili P, Froment A, Ibrahim M, Lema G, Nyambo TB, Omar SA, Wambebe C, Ranciaro A, Hirbo JB, Tishkoff SA | American journal of human genetics | 21664997 | Am J Hum Genet | 2011 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/21664997 |
| Colloquium paper: working toward a synthesis of archaeological, linguistic, and genetic data for inferring African population history. | Scheinfeldt LB, Soi S, Tishkoff SA | Proceedings of the National Academy of Sciences of the United States of America | 20445100 | Proc Natl Acad Sci U S A | 2010 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/20445100 |
| Patterns of ancestry, signatures of natural selection, and genetic association with stature in Western African pygmies. | Jarvis JP, Scheinfeldt LB, Soi S, Lambert C, Omberg L, Ferwerda B, Froment A, Bodo JM, Beggs W, Hoffman G, Mezey J, Tishkoff SA | PLoS genetics | 22570615 | PLoS Genet | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22570615 |
| Recent human adaptation: genomic approaches, interpretation and insights. | Scheinfeldt LB, Tishkoff SA | Nature reviews. Genetics | 24052086 | Nat Rev Genet | 2013 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24052086 |
| Patterns of nucleotide and haplotype diversity at ICAM-1 across global human populations with varying levels of malaria exposure. | Gomez F, Tomas G, Ko WY, Ranciaro A, Froment A, Ibrahim M, Lema G, Nyambo TB, Omar SA, Wambebe C, Hirbo JB, Rocha J, Tishkoff SA | Human genetics | 23609612 | Hum Genet | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/23609612 |
| Living the high life: high-altitude adaptation. | Scheinfeldt LB, Tishkoff SA | Genome biology | 20979669 | Genome Biol | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/20979669 |
| A founder mutation in LEPRE1 carried by 1.5% of West Africans and 0.4% of African Americans causes lethal recessive osteogenesis imperfecta. | Cabral WA, Barnes AM, Adeyemo A, Cushing K, Chitayat D, Porter FD, Panny SR, Gulamali-Majid F, Tishkoff SA, Rebbeck TR, Gueye SM, Bailey-Wilson JE, Brody LC, Rotimi CN, Marini JC | Genetics in medicine : official journal of the American College of Medical Genetics | 22281939 | Genet Med | 2012 May | https://www.ncbi.nlm.nih.gov/pubmed/22281939 |
| Characterization of genetic variation and natural selection at the arylamine N-acetyltransferase genes in global human populations. | Mortensen HM, Froment A, Lema G, Bodo JM, Ibrahim M, Nyambo TB, Omar SA, Tishkoff SA | Pharmacogenomics | 21995608 | Pharmacogenomics | 2011 Nov | https://www.ncbi.nlm.nih.gov/pubmed/21995608 |
| The NADPH metabolic network regulates human αB-crystallin cardiomyopathy and reductive stress in Drosophila melanogaster. | Xie HB, Cammarato A, Rajasekaran NS, Zhang H, Suggs JA, Lin HC, Bernstein SI, Benjamin IJ, Golic KG | PLoS genetics | 23818860 | PLoS Genet | 2013 Jun | https://www.ncbi.nlm.nih.gov/pubmed/23818860 |
| Profibrotic COVID-19 subphenotype exhibits enhanced localized ER-dependent HSP47(+) expression in cardiac myofibroblasts in situ. | Jacobs ER, Ross GR, Padilla N, Pan AY, Liegl M, Puzyrenko A, Lai S, Dai Q, Uche N, Rubenstein JC, North PE, Ibrahim EH, Sun Y, Felix JC, Rui H, Benjamin IJ | Journal of molecular and cellular cardiology | 37839656 | J Mol Cell Cardiol | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37839656 |
| Glutathione-dependent reductive stress triggers mitochondrial oxidation and cytotoxicity. | Zhang H, Limphong P, Pieper J, Liu Q, Rodesch CK, Christians E, Benjamin IJ | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 22202674 | FASEB J | 2012 Apr | https://www.ncbi.nlm.nih.gov/pubmed/22202674 |
| Effects of redox state on the efficient uptake of cell permeable Peptide in Mammalian cells. | Squires S, Christians E, Riedel M, Timothy D, Rodesch CK, Marvin J, Benjamin I | The open biochemistry journal | 23919090 | Open Biochem J | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23919090 |
| Aggregate-prone R120GCRYAB triggers multifaceted modifications of the thioredoxin system. | Banerjee Mustafi S, Grose JH, Zhang H, Pratt GW, Sadoshima J, Christians ES, Benjamin IJ | Antioxidants & redox signaling | 24180415 | Antioxid Redox Signal | 2014 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/24180415 |
| Human alpha B-crystallin mutation causes oxido-reductive stress and protein aggregation cardiomyopathy in mice. | Rajasekaran NS, Connell P, Christians ES, Yan LJ, Taylor RP, Orosz A, Zhang XQ, Stevenson TJ, Peshock RM, Leopold JA, Barry WH, Loscalzo J, Odelberg SJ, Benjamin IJ | Cell | 17693254 | Cell | 2007 Aug 10 | https://www.ncbi.nlm.nih.gov/pubmed/17693254 |
| Rescue of αB Crystallin (HSPB5) Mutants Associated Protein Aggregation by Co-Expression of HSPB5 Partners. | Hussein RM, Benjamin IJ, Kampinga HH | PloS one | 25961584 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25961584 |
| HSF1 critically attunes proteotoxic stress sensing by mTORC1 to combat stress and promote growth. | Su KH, Cao J, Tang Z, Dai S, He Y, Sampson SB, Benjamin IJ, Dai C | Nature cell biology | 27043084 | Nat Cell Biol | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27043084 |
| Targeting endoglin, an auxiliary transforming growth factor β coreceptor, to prevent fibrosis and heart failure. | Benjamin IJ | Circulation | 22592899 | Circulation | 2012 Jun 5 | https://www.ncbi.nlm.nih.gov/pubmed/22592899 |
| Small heat shock proteins in redox metabolism: implications for cardiovascular diseases. | Christians ES, Ishiwata T, Benjamin IJ | The international journal of biochemistry & cell biology | 22710345 | Int J Biochem Cell Biol | 2012 Oct | https://www.ncbi.nlm.nih.gov/pubmed/22710345 |
| HSPB2 is dispensable for the cardiac hypertrophic response but reduces mitochondrial energetics following pressure overload in mice. | Ishiwata T, Orosz A, Wang X, Mustafi SB, Pratt GW, Christians ES, Boudina S, Abel ED, Benjamin IJ | PloS one | 22870288 | PLoS One | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22870288 |
| Patient-derived xenografts of low-grade B-cell lymphomas demonstrate roles of the tumor microenvironment. | Burack WR, Spence JM, Spence JP, Spence SA, Rock PJ, Shenoy GN, Shultz LD, Bankert RB, Bernstein SH | Blood advances | 29296768 | Blood Adv | 2017 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/29296768 |
| Characterization of the Cardiac Overexpression of HSPB2 Reveals Mitochondrial and Myogenic Roles Supported by a Cardiac HspB2 Interactome. | Grose JH, Langston K, Wang X, Squires S, Mustafi SB, Hayes W, Neubert J, Fischer SK, Fasano M, Saunders GM, Dai Q, Christians E, Lewandowski ED, Ping P, Benjamin IJ | PloS one | 26465331 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26465331 |
| Chaperones and cardiac misfolding protein diseases. | Christians ES, Mustafi SB, Benjamin IJ | Current protein & peptide science | 24694370 | Curr Protein Pept Sci | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/24694370 |
| Selective degradation of aggregate-prone CryAB mutants by HSPB1 is mediated by ubiquitin-proteasome pathways. | Zhang H, Rajasekaran NS, Orosz A, Xiao X, Rechsteiner M, Benjamin IJ | Journal of molecular and cellular cardiology | 20863832 | J Mol Cell Cardiol | 2010 Dec | https://www.ncbi.nlm.nih.gov/pubmed/20863832 |
| Sustained activation of nuclear erythroid 2-related factor 2/antioxidant response element signaling promotes reductive stress in the human mutant protein aggregation cardiomyopathy in mice. | Rajasekaran NS, Varadharaj S, Khanderao GD, Davidson CJ, Kannan S, Firpo MA, Zweier JL, Benjamin IJ | Antioxidants & redox signaling | 21126175 | Antioxid Redox Signal | 2011 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/21126175 |
| Reductive stress linked to small HSPs, G6PD, and Nrf2 pathways in heart disease. | Brewer AC, Mustafi SB, Murray TV, Rajasekaran NS, Benjamin IJ | Antioxidants & redox signaling | 22938199 | Antioxid Redox Signal | 2013 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/22938199 |
| Proteostasis and REDOX state in the heart. | Christians ES, Benjamin IJ | American journal of physiology. Heart and circulatory physiology | 22003057 | Am J Physiol Heart Circ Physiol | 2012 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/22003057 |
| Knockout of Lysosomal Enzyme-Targeting Gene Causes Abnormalities in Mouse Pup Isolation Calls. | Barnes TD, Holy TE | Frontiers in behavioral neuroscience | 28101008 | Front Behav Neurosci | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/28101008 |
| Organization of vomeronasal sensory coding revealed by fast volumetric calcium imaging. | Turaga D, Holy TE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 22302803 | J Neurosci | 2012 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/22302803 |
| Vasoactive intestinal polypeptide mediates circadian rhythms in mammalian olfactory bulb and olfaction. | Miller JE, Granados-Fuentes D, Wang T, Marpegan L, Holy TE, Herzog ED | The Journal of neuroscience : the official journal of the Society for Neuroscience | 24760863 | J Neurosci | 2014 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/24760863 |
| Experience-Dependent Plasticity Drives Individual Differences in Pheromone-Sensing Neurons. | Xu PS, Lee D, Holy TE | Neuron | 27537487 | Neuron | 2016 Aug 17 | https://www.ncbi.nlm.nih.gov/pubmed/27537487 |
| A Mutation Associated with Stuttering Alters Mouse Pup Ultrasonic Vocalizations. | Barnes TD, Wozniak DF, Gutierrez J, Han TU, Drayna D, Holy TE | Current biology : CB | 27151663 | Curr Biol | 2016 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/27151663 |
| MicroRNAs regulate B-cell receptor signaling-induced apoptosis. | Kluiver JL, Chen CZ | Genes and immunity | 22357493 | Genes Immun | 2012 Apr | https://www.ncbi.nlm.nih.gov/pubmed/22357493 |
| An unsolved mystery: the target-recognizing RNA species of microRNA genes. | Chen CZ | Biochimie | 23685275 | Biochimie | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/23685275 |
| The miR-17-92 microRNA polycistron regulates MLL leukemia stem cell potential by modulating p21 expression. | Wong P, Iwasaki M, Somervaille TC, Ficara F, Carico C, Arnold C, Chen CZ, Cleary ML | Cancer research | 20406979 | Cancer Res | 2010 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/20406979 |
| Pre-miRNA loop nucleotides control the distinct activities of mir-181a-1 and mir-181c in early T cell development. | Liu G, Min H, Yue S, Chen CZ | PloS one | 18974849 | PLoS One | 2008 | https://www.ncbi.nlm.nih.gov/pubmed/18974849 |
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| Revealing global regulatory perturbations across human cancers. | Goodarzi H, Elemento O, Tavazoie S | Molecular cell | 20005852 | Mol Cell | 2009 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/20005852 |
| Systematic discovery of structural elements governing stability of mammalian messenger RNAs. | Goodarzi H, Najafabadi HS, Oikonomou P, Greco TM, Fish L, Salavati R, Cristea IM, Tavazoie S | Nature | 22495308 | Nature | 2012 Apr 8 | https://www.ncbi.nlm.nih.gov/pubmed/22495308 |
| Predictive behavior within microbial genetic networks. | Tagkopoulos I, Liu YC, Tavazoie S | Science (New York, N.Y.) | 18467556 | Science | 2008 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/18467556 |
| Genetic architecture of intrinsic antibiotic susceptibility. | Girgis HS, Hottes AK, Tavazoie S | PloS one | 19462005 | PLoS One | 2009 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/19462005 |
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| Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli. | Goodarzi H, Bennett BD, Amini S, Reaves ML, Hottes AK, Rabinowitz JD, Tavazoie S | Molecular systems biology | 20531407 | Mol Syst Biol | 2010 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/20531407 |
| Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli. | Amini S, Goodarzi H, Tavazoie S | PLoS pathogens | 19436718 | PLoS Pathog | 2009 May | https://www.ncbi.nlm.nih.gov/pubmed/19436718 |
| Calculation of electrostatic effects at the amino terminus of an alpha helix. | Sitkoff D, Lockhart DJ, Sharp KA, Honig B | Biophysical journal | 7696466 | Biophys J | 1994 Dec | https://www.ncbi.nlm.nih.gov/pubmed/7696466 |
| Lynx1, a cholinergic brake, limits plasticity in adult visual cortex. | Morishita H, Miwa JM, Heintz N, Hensch TK | Science (New York, N.Y.) | 21071629 | Science | 2010 Nov 26 | https://www.ncbi.nlm.nih.gov/pubmed/21071629 |
| Excitatory projection neuron subtypes control the distribution of local inhibitory interneurons in the cerebral cortex. | Lodato S, Rouaux C, Quast KB, Jantrachotechatchawan C, Studer M, Hensch TK, Arlotta P | Neuron | 21338885 | Neuron | 2011 Feb 24 | https://www.ncbi.nlm.nih.gov/pubmed/21338885 |
| Analytical approaches to RNA profiling data for the identification of genes enriched in specific cells. | Dougherty JD, Schmidt EF, Nakajima M, Heintz N | Nucleic acids research | 20308160 | Nucleic Acids Res | 2010 Jul | https://www.ncbi.nlm.nih.gov/pubmed/20308160 |
| Choroid-plexus-derived Otx2 homeoprotein constrains adult cortical plasticity. | Spatazza J, Lee HH, Di Nardo AA, Tibaldi L, Joliot A, Hensch TK, Prochiantz A | Cell reports | 23770240 | Cell Rep | 2013 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/23770240 |
| Sensory integration in mouse insular cortex reflects GABA circuit maturation. | Gogolla N, Takesian AE, Feng G, Fagiolini M, Hensch TK | Neuron | 25088363 | Neuron | 2014 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/25088363 |
| NMDA receptor regulation prevents regression of visual cortical function in the absence of Mecp2. | Durand S, Patrizi A, Quast KB, Hachigian L, Pavlyuk R, Saxena A, Carninci P, Hensch TK, Fagiolini M | Neuron | 23259945 | Neuron | 2012 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/23259945 |
| Otx2 binding to perineuronal nets persistently regulates plasticity in the mature visual cortex. | Beurdeley M, Spatazza J, Lee HH, Sugiyama S, Bernard C, Di Nardo AA, Hensch TK, Prochiantz A | The Journal of neuroscience : the official journal of the Society for Neuroscience | 22764251 | J Neurosci | 2012 Jul 4 | https://www.ncbi.nlm.nih.gov/pubmed/22764251 |
| From brain formation to plasticity: insights on Otx2 homeoprotein. | Sugiyama S, Prochiantz A, Hensch TK | Development, growth & differentiation | 19298552 | Dev Growth Differ | 2009 Apr | https://www.ncbi.nlm.nih.gov/pubmed/19298552 |
| Prolonged Period of Cortical Plasticity upon Redox Dysregulation in Fast-Spiking Interneurons. | Morishita H, Cabungcal JH, Chen Y, Do KQ, Hensch TK | Biological psychiatry | 25758057 | Biol Psychiatry | 2015 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/25758057 |
| Early Seizures Prematurely Unsilence Auditory Synapses to Disrupt Thalamocortical Critical Period Plasticity. | Sun H, Takesian AE, Wang TT, Lippman-Bell JJ, Hensch TK, Jensen FE | Cell reports | 29847785 | Cell Rep | 2018 May 29 | https://www.ncbi.nlm.nih.gov/pubmed/29847785 |
| Brain correlates of autonomic modulation: combining heart rate variability with fMRI. | Napadow V, Dhond R, Conti G, Makris N, Brown EN, Barbieri R | NeuroImage | 18524629 | Neuroimage | 2008 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/18524629 |
| Simultaneous electroencephalography and functional magnetic resonance imaging of general anesthesia. | Purdon PL, Pierce ET, Bonmassar G, Walsh J, Harrell PG, Kwo J, Deschler D, Barlow M, Merhar RC, Lamus C, Mullaly CM, Sullivan M, Maginnis S, Skoniecki D, Higgins HA, Brown EN | Annals of the New York Academy of Sciences | 19351356 | Ann N Y Acad Sci | 2009 Mar | https://www.ncbi.nlm.nih.gov/pubmed/19351356 |
| A Bayesian statistical analysis of behavioral facilitation associated with deep brain stimulation. | Smith AC, Shah SA, Hudson AE, Purpura KP, Victor JD, Brown EN, Schiff ND | Journal of neuroscience methods | 19576932 | J Neurosci Methods | 2009 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/19576932 |
| A statistical model for multiphoton calcium imaging of the brain. | Malik WQ, Schummers J, Sur M, Brown EN | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 19964727 | Annu Int Conf IEEE Eng Med Biol Soc | 2009 | https://www.ncbi.nlm.nih.gov/pubmed/19964727 |
| State-space algorithms for estimating spike rate functions. | Smith AC, Scalon JD, Wirth S, Yanike M, Suzuki WA, Brown EN | Computational intelligence and neuroscience | 19911062 | Comput Intell Neurosci | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/19911062 |
| Active emergence from propofol general anesthesia is induced by methylphenidate. | Chemali JJ, Van Dort CJ, Brown EN, Solt K | Anesthesiology | 22446983 | Anesthesiology | 2012 May | https://www.ncbi.nlm.nih.gov/pubmed/22446983 |
| A closed-loop anesthetic delivery system for real-time control of burst suppression. | Liberman MY, Ching S, Chemali J, Brown EN | Journal of neural engineering | 23744607 | J Neural Eng | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23744607 |
| Statistical modeling of behavioral dynamics during propofol-induced loss of consciousness. | Wong KF, Smith AC, Pierce ET, Harrell PG, Walsh JL, Salazar-Gómez AF, Tavares CL, Purdon PL, Brown EN | Journal of neuroscience methods | 24530701 | J Neurosci Methods | 2014 Apr 30 | https://www.ncbi.nlm.nih.gov/pubmed/24530701 |
| Biophysics. Clutch dynamics. | Aratyn-Schaus Y, Gardel ML | Science (New York, N.Y.) | 19074337 | Science | 2008 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/19074337 |
| Preparation of complaint matrices for quantifying cellular contraction. | Aratyn-Schaus Y, Oakes PW, Stricker J, Winter SP, Gardel ML | Journal of visualized experiments : JoVE | 21178972 | J Vis Exp | 2010 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/21178972 |
| High resolution traction force microscopy based on experimental and computational advances. | Sabass B, Gardel ML, Waterman CM, Schwarz US | Biophysical journal | 17827246 | Biophys J | 2008 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/17827246 |
| Stressing the limits of focal adhesion mechanosensitivity. | Oakes PW, Gardel ML | Current opinion in cell biology | 24998185 | Curr Opin Cell Biol | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24998185 |
| Mechanics of the F-actin cytoskeleton. | Stricker J, Falzone T, Gardel ML | Journal of biomechanics | 19913792 | J Biomech | 2010 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/19913792 |
| Mechanical integration of actin and adhesion dynamics in cell migration. | Gardel ML, Schneider IC, Aratyn-Schaus Y, Waterman CM | Annual review of cell and developmental biology | 19575647 | Annu Rev Cell Dev Biol | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/19575647 |
| Cell-ECM traction force modulates endogenous tension at cell-cell contacts. | Maruthamuthu V, Sabass B, Schwarz US, Gardel ML | Proceedings of the National Academy of Sciences of the United States of America | 21383129 | Proc Natl Acad Sci U S A | 2011 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/21383129 |
| Traction stress in focal adhesions correlates biphasically with actin retrograde flow speed. | Gardel ML, Sabass B, Ji L, Danuser G, Schwarz US, Waterman CM | The Journal of cell biology | 19075110 | J Cell Biol | 2008 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/19075110 |
| Materials science: Synthetic polymers with biological rigidity. | Gardel ML | Nature | 23354043 | Nature | 2013 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/23354043 |
| Endothelial barrier disruption and recovery is controlled by substrate stiffness. | Birukova AA, Tian X, Cokic I, Beckham Y, Gardel ML, Birukov KG | Microvascular research | 23296034 | Microvasc Res | 2013 May | https://www.ncbi.nlm.nih.gov/pubmed/23296034 |
| Contractile units in disordered actomyosin bundles arise from F-actin buckling. | Lenz M, Thoresen T, Gardel ML, Dinner AR | Physical review letters | 23003998 | Phys Rev Lett | 2012 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/23003998 |
| Reconstitution of contractile actomyosin arrays. | Murrell M, Thoresen T, Gardel M | Methods in enzymology | 24630112 | Methods Enzymol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24630112 |
| A zyxin-mediated mechanism for actin stress fiber maintenance and repair. | Smith MA, Blankman E, Gardel ML, Luettjohann L, Waterman CM, Beckerle MC | Developmental cell | 20833360 | Dev Cell | 2010 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/20833360 |
| Conserved F-actin dynamics and force transmission at cell adhesions. | Maruthamuthu V, Aratyn-Schaus Y, Gardel ML | Current opinion in cell biology | 20728328 | Curr Opin Cell Biol | 2010 Oct | https://www.ncbi.nlm.nih.gov/pubmed/20728328 |
| Identification and characterization of a small molecule inhibitor of formin-mediated actin assembly. | Rizvi SA, Neidt EM, Cui J, Feiger Z, Skau CT, Gardel ML, Kozmin SA, Kovar DR | Chemistry & biology | 19942139 | Chem Biol | 2009 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/19942139 |
| A mouse model of tuberous sclerosis: neuronal loss of Tsc1 causes dysplastic and ectopic neurons, reduced myelination, seizure activity, and limited survival. | Meikle L, Talos DM, Onda H, Pollizzi K, Rotenberg A, Sahin M, Jensen FE, Kwiatkowski DJ | The Journal of neuroscience : the official journal of the Society for Neuroscience | 17522300 | J Neurosci | 2007 May 23 | https://www.ncbi.nlm.nih.gov/pubmed/17522300 |
| Gene expression profiling of a hypoxic seizure model of epilepsy suggests a role for mTOR and Wnt signaling in epileptogenesis. | Theilhaber J, Rakhade SN, Sudhalter J, Kothari N, Klein P, Pollard J, Jensen FE | PloS one | 24086344 | PLoS One | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24086344 |
| Mammalian target of rapamycin complex 1 activation negatively regulates Polo-like kinase 2-mediated homeostatic compensation following neonatal seizures. | Sun H, Kosaras B, Klein PM, Jensen FE | Proceedings of the National Academy of Sciences of the United States of America | 23479645 | Proc Natl Acad Sci U S A | 2013 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/23479645 |
| Finding a better drug for epilepsy: antiepileptogenesis targets. | Kobow K, Auvin S, Jensen F, Löscher W, Mody I, Potschka H, Prince D, Sierra A, Simonato M, Pitkänen A, Nehlig A, Rho JM | Epilepsia | 23061663 | Epilepsia | 2012 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23061663 |
| Glutamate receptor 1 phosphorylation at serine 831 and 845 modulates seizure susceptibility and hippocampal hyperexcitability after early life seizures. | Rakhade SN, Fitzgerald EF, Klein PM, Zhou C, Sun H, Huganir RL, Jensen FE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 23223299 | J Neurosci | 2012 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/23223299 |
| Contribution of axonal orientation to pathway-dependent modulation of excitatory transmission by direct current stimulation in isolated rat hippocampus. | Kabakov AY, Muller PA, Pascual-Leone A, Jensen FE, Rotenberg A | Journal of neurophysiology | 22219028 | J Neurophysiol | 2012 Apr | https://www.ncbi.nlm.nih.gov/pubmed/22219028 |
| Hypoxia-induced neonatal seizures diminish silent synapses and long-term potentiation in hippocampal CA1 neurons. | Zhou C, Lippman JJ, Sun H, Jensen FE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 22171027 | J Neurosci | 2011 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/22171027 |
| Strain-specific differences in perinatal rodent oligodendrocyte lineage progression and its correlation with human. | Dean JM, Moravec MD, Grafe M, Abend N, Ren J, Gong X, Volpe JJ, Jensen FE, Hohimer AR, Back SA | Developmental neuroscience | 21865655 | Dev Neurosci | 2011 | https://www.ncbi.nlm.nih.gov/pubmed/21865655 |
| Epilepsy as a spectrum disorder: Implications from novel clinical and basic neuroscience. | Jensen FE | Epilepsia | 21214533 | Epilepsia | 2011 Jan | https://www.ncbi.nlm.nih.gov/pubmed/21214533 |
| Chloride cotransporter NKCC1 inhibitor bumetanide protects against white matter injury in a rodent model of periventricular leukomalacia. | Jantzie LL, Hu MY, Park HK, Jackson MC, Yu J, Maxwell JR, Jensen FE | Pediatric research | 25585037 | Pediatr Res | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25585037 |
| AMPA Receptor Dysregulation and Therapeutic Interventions in a Mouse Model of CDKL5 Deficiency Disorder. | Yennawar M, White RS, Jensen FE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30952813 | J Neurosci | 2019 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/30952813 |
| Developmental regulation of group I metabotropic glutamate receptors in the premature brain and their protective role in a rodent model of periventricular leukomalacia. | Jantzie LL, Talos DM, Selip DB, An L, Jackson MC, Folkerth RD, Deng W, Jensen FE | Neuron glia biology | 22169210 | Neuron Glia Biol | 2010 Nov | https://www.ncbi.nlm.nih.gov/pubmed/22169210 |
| Epilepsy biomarkers. | Engel J Jr, Pitkänen A, Loeb JA, Dudek FE, Bertram EH 3rd, Cole AJ, Moshé SL, Wiebe S, Jensen FE, Mody I, Nehlig A, Vezzani A | Epilepsia | 23909854 | Epilepsia | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23909854 |
| Benign rolandic epileptiform discharges are associated with mood and behavior problems. | Sarco DP, Boyer K, Lundy-Krigbaum SM, Takeoka M, Jensen F, Gregas M, Waber DP | Epilepsy & behavior : E&B | 21862414 | Epilepsy Behav | 2011 Oct | https://www.ncbi.nlm.nih.gov/pubmed/21862414 |
| The tower of Babel: survey on concepts and terminology in electrical status epilepticus in sleep and continuous spikes and waves during sleep in North America. | Fernández IS, Chapman KE, Peters JM, Kothare SV, Nordli DR Jr, Jensen FE, Berg AT, Loddenkemper T | Epilepsia | 23163318 | Epilepsia | 2013 Apr | https://www.ncbi.nlm.nih.gov/pubmed/23163318 |
| Epileptogenesis in the immature brain: emerging mechanisms. | Rakhade SN, Jensen FE | Nature reviews. Neurology | 19578345 | Nat Rev Neurol | 2009 Jul | https://www.ncbi.nlm.nih.gov/pubmed/19578345 |
| Early alterations of AMPA receptors mediate synaptic potentiation induced by neonatal seizures. | Rakhade SN, Zhou C, Aujla PK, Fishman R, Sucher NJ, Jensen FE | The Journal of neuroscience : the official journal of the Society for Neuroscience | 18685023 | J Neurosci | 2008 Aug 6 | https://www.ncbi.nlm.nih.gov/pubmed/18685023 |
| Association of the small GTPase Rheb with the NMDA receptor subunit NR3A. | Sucher NJ, Yu E, Chan SF, Miri M, Lee BJ, Xiao B, Worley PF, Jensen FE | Neuro-Signals | 21135540 | Neurosignals | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/21135540 |
| Blinders, phenotype, and fashionable genetic analysis: a critical examination of the current state of epilepsy genetic studies. | Greenberg DA, Subaran R | Epilepsia | 21219301 | Epilepsia | 2011 Jan | https://www.ncbi.nlm.nih.gov/pubmed/21219301 |
| Dysregulation of FMRP/mTOR Signaling Cascade in Hypoxic-Ischemic Injury of Premature Human Brain. | Lechpammer M, Wintermark P, Merry KM, Jackson MC, Jantzie LL, Jensen FE | Journal of child neurology | 26239490 | J Child Neurol | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26239490 |
| Neonatal seizures alter NMDA glutamate receptor GluN2A and 3A subunit expression and function in hippocampal CA1 neurons. | Zhou C, Sun H, Klein PM, Jensen FE | Frontiers in cellular neuroscience | 26441533 | Front Cell Neurosci | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26441533 |
| Altered development of glutamatergic synapses in layer V pyramidal neurons in NR3A knockout mice. | Zhou C, Jensen FE, Sucher NJ | Molecular and cellular neurosciences | 19782137 | Mol Cell Neurosci | 2009 Dec | https://www.ncbi.nlm.nih.gov/pubmed/19782137 |
| Development of later life spontaneous seizures in a rodent model of hypoxia-induced neonatal seizures. | Rakhade SN, Klein PM, Huynh T, Hilario-Gomez C, Kosaras B, Rotenberg A, Jensen FE | Epilepsia | 21366558 | Epilepsia | 2011 Apr | https://www.ncbi.nlm.nih.gov/pubmed/21366558 |
| The developing oligodendrocyte: key cellular target in brain injury in the premature infant. | Volpe JJ, Kinney HC, Jensen FE, Rosenberg PA | International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience | 21382469 | Int J Dev Neurosci | 2011 Jun | https://www.ncbi.nlm.nih.gov/pubmed/21382469 |
| Regional differences in susceptibility to hypoxic-ischemic injury in the preterm brain: exploring the spectrum from white matter loss to selective grey matter injury in a rat model. | Selip DB, Jantzie LL, Chang M, Jackson MC, Fitzgerald EC, Boll G, Murphy A, Jensen FE | Neurology research international | 22530125 | Neurol Res Int | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22530125 |
| Developmental factors in the pathogenesis of neonatal seizures. | Jensen FE | Journal of pediatric neurology : JPN | 20191097 | J Pediatr Neurol | 2009 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/20191097 |
| The interaction between early life epilepsy and autistic-like behavioral consequences: a role for the mammalian target of rapamycin (mTOR) pathway. | Talos DM, Sun H, Zhou X, Fitzgerald EC, Jackson MC, Klein PM, Lan VJ, Joseph A, Jensen FE | PloS one | 22567115 | PLoS One | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/22567115 |
| Perfusion Imaging of Focal Cortical Dysplasia Using Arterial Spin Labeling: Correlation With Histopathological Vascular Density. | Wintermark P, Lechpammer M, Warfield SK, Kosaras B, Takeoka M, Poduri A, Madsen JR, Bergin AM, Whalen S, Jensen FE | Journal of child neurology | 23696629 | J Child Neurol | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23696629 |
| Issues related to development of antiepileptogenic therapies. | Pitkänen A, Nehlig A, Brooks-Kayal AR, Dudek FE, Friedman D, Galanopoulou AS, Jensen FE, Kaminski RM, Kapur J, Klitgaard H, Löscher W, Mody I, Schmidt D | Epilepsia | 23909852 | Epilepsia | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23909852 |
| Issues related to symptomatic and disease-modifying treatments affecting cognitive and neuropsychiatric comorbidities of epilepsy. | Brooks-Kayal AR, Bath KG, Berg AT, Galanopoulou AS, Holmes GL, Jensen FE, Kanner AM, O'Brien TJ, Whittemore VH, Winawer MR, Patel M, Scharfman HE | Epilepsia | 23909853 | Epilepsia | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23909853 |
| Models of hypoxia and ischemia-induced seizures. | Sun H, Juul HM, Jensen FE | Journal of neuroscience methods | 26434705 | J Neurosci Methods | 2016 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/26434705 |
| Early-life seizures alter synaptic calcium-permeable AMPA receptor function and plasticity. | Lippman-Bell JJ, Zhou C, Sun H, Feske JS, Jensen FE | Molecular and cellular neurosciences | 27521497 | Mol Cell Neurosci | 2016 Oct | https://www.ncbi.nlm.nih.gov/pubmed/27521497 |
| Subunit composition of glutamate and gamma-aminobutyric acid receptors in status epilepticus. | Loddenkemper T, Talos DM, Cleary RT, Joseph A, Sánchez Fernández I, Alexopoulos A, Kotagal P, Najm I, Jensen FE | Epilepsy research | 24613745 | Epilepsy Res | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/24613745 |
| Bumetanide enhances phenobarbital efficacy in a rat model of hypoxic neonatal seizures. | Cleary RT, Sun H, Huynh T, Manning SM, Li Y, Rotenberg A, Talos DM, Kahle KT, Jackson M, Rakhade SN, Berry G, Jensen FE | PloS one | 23536761 | PLoS One | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23536761 |
| Altered hippocampal dendritic spine maturation after hypoxia-induced seizures in neonatal rats. | Lippman-Bell JJ, Handy M, Nieder CG, Getzfread M, Jensen FE | Molecular and cellular neurosciences | 34015497 | Mol Cell Neurosci | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34015497 |
| Lestaurtinib (CEP-701) attenuates "second hit" kainic acid-induced seizures following early life hypoxic seizures. | Obeid M, Rosenberg EC, Klein PM, Jensen FE | Epilepsy research | 24582454 | Epilepsy Res | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/24582454 |
| Developmental expression of N-methyl-D-aspartate (NMDA) receptor subunits in human white and gray matter: potential mechanism of increased vulnerability in the immature brain. | Jantzie LL, Talos DM, Jackson MC, Park HK, Graham DA, Lechpammer M, Folkerth RD, Volpe JJ, Jensen FE | Cerebral cortex (New York, N.Y. : 1991) | 24046081 | Cereb Cortex | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/24046081 |
| Antiepileptic effects of levetiracetam in a rodent neonatal seizure model. | Talos DM, Chang M, Kosaras B, Fitzgerald E, Murphy A, Folkerth RD, Jensen FE | Pediatric research | 23138400 | Pediatr Res | 2013 Jan | https://www.ncbi.nlm.nih.gov/pubmed/23138400 |
| AMPA receptor antagonist NBQX attenuates later-life epileptic seizures and autistic-like social deficits following neonatal seizures. | Lippman-Bell JJ, Rakhade SN, Klein PM, Obeid M, Jackson MC, Joseph A, Jensen FE | Epilepsia | 24117347 | Epilepsia | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/24117347 |
| Neonatal seizures: an update on mechanisms and management. | Jensen FE | Clinics in perinatology | 19944840 | Clin Perinatol | 2009 Dec | https://www.ncbi.nlm.nih.gov/pubmed/19944840 |
| Altered inhibition in tuberous sclerosis and type IIb cortical dysplasia. | Talos DM, Sun H, Kosaras B, Joseph A, Folkerth RD, Poduri A, Madsen JR, Black PM, Jensen FE | Annals of neurology | 22447678 | Ann Neurol | 2012 Apr | https://www.ncbi.nlm.nih.gov/pubmed/22447678 |
| Does acquired epileptogenesis in the immature brain require neuronal death. | Baram TZ, Jensen FE, Brooks-Kayal A | Epilepsy currents | 21461261 | Epilepsy Curr | 2011 Jan | https://www.ncbi.nlm.nih.gov/pubmed/21461261 |
| The clinically available NMDA receptor antagonist, memantine, exhibits relative safety in the developing rat brain. | Manning SM, Boll G, Fitzgerald E, Selip DB, Volpe JJ, Jensen FE | International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience | 21624454 | Int J Dev Neurosci | 2011 Nov | https://www.ncbi.nlm.nih.gov/pubmed/21624454 |
| Cannabidiol attenuates seizure susceptibility and behavioural deficits in adult CDKL5(R59X) knock-in mice. | Li X, Yennawar M, Wiest A, O'Brien WT, Babrowicz B, White RS, Talos DM, Jensen FE | The European journal of neuroscience | 38654472 | Eur J Neurosci | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38654472 |
| Regulation of seizure-induced MeCP2 Ser421 phosphorylation in the developing brain. | Rosenberg EC, Lippman-Bell JJ, Handy M, Soldan SS, Rakhade S, Hilario-Gomez C, Folweiler K, Jacobs L, Jensen FE | Neurobiology of disease | 29738885 | Neurobiol Dis | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29738885 |
| Neural correlates of novelty and face-age effects in young and elderly adults. | Wright CI, Negreira A, Gold AL, Britton JC, Williams D, Barrett LF | NeuroImage | 18586522 | Neuroimage | 2008 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/18586522 |
| Individual differences in learning the affective value of others under minimal conditions. | Bliss-Moreau E, Barrett LF, Wright CI | Emotion (Washington, D.C.) | 18729580 | Emotion | 2008 Aug | https://www.ncbi.nlm.nih.gov/pubmed/18729580 |
| Novelty as a dimension in the affective brain. | Weierich MR, Wright CI, Negreira A, Dickerson BC, Barrett LF | NeuroImage | 19796697 | Neuroimage | 2010 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/19796697 |
| Valence focus and self-esteem lability: reacting to hedonic cues in the social environment. | Pietromonaco PR, Barrett LF | Emotion (Washington, D.C.) | 19485618 | Emotion | 2009 Jun | https://www.ncbi.nlm.nih.gov/pubmed/19485618 |
| Experience Sampling Methods: A Modern Idiographic Approach to Personality Research. | Conner TS, Tennen H, Fleeson W, Barrett LF | Social and personality psychology compass | 19898679 | Soc Personal Psychol Compass | 2009 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/19898679 |
| Reconstructing the Past: A Century of Ideas About Emotion in Psychology. | Gendron M, Barrett LF | Emotion review : journal of the International Society for Research on Emotion | 20221412 | Emot Rev | 2009 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/20221412 |
| Reading chimpanzee faces: evidence for the role of verbal labels in categorical perception of emotion. | Fugate JM, Gouzoules H, Barrett LF | Emotion (Washington, D.C.) | 20677871 | Emotion | 2010 Aug | https://www.ncbi.nlm.nih.gov/pubmed/20677871 |
| Affect as a Psychological Primitive. | Barrett LF, Bliss-Moreau E | Advances in experimental social psychology | 20552040 | Adv Exp Soc Psychol | 2009 | https://www.ncbi.nlm.nih.gov/pubmed/20552040 |
| I Like the Sound of Your Voice: Affective Learning about Vocal Signals. | Bliss-Moreau E, Barrett LF, Owren MJ | Journal of experimental social psychology | 20495619 | J Exp Soc Psychol | 2010 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/20495619 |
| Situating emotional experience. | Wilson-Mendenhall CD, Barrett LF, Barsalou LW | Frontiers in human neuroscience | 24324420 | Front Hum Neurosci | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24324420 |
| Perceptions of emotion from facial expressions are not culturally universal: evidence from a remote culture. | Gendron M, Roberson D, van der Vyver JM, Barrett LF | Emotion (Washington, D.C.) | 24708506 | Emotion | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24708506 |
| Emotion perception, but not affect perception, is impaired with semantic memory loss. | Lindquist KA, Gendron M, Barrett LF, Dickerson BC | Emotion (Washington, D.C.) | 24512242 | Emotion | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24512242 |
| "Utilizing" signal detection theory. | Lynn SK, Barrett LF | Psychological science | 25097061 | Psychol Sci | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25097061 |
| Authors’ response: what are emotions and how are they created in the brain? | Lindquist KA, Wager TD, Bliss-Moreau E, Kober H, Barret LF | The Behavioral and brain sciences | 22783560 | Behav Brain Sci | 2012 Jun | https://www.ncbi.nlm.nih.gov/pubmed/22783560 |
| Emotions are real. | Barrett LF | Emotion (Washington, D.C.) | 22642358 | Emotion | 2012 Jun | https://www.ncbi.nlm.nih.gov/pubmed/22642358 |
| The brain basis of emotion: a meta-analytic review. | Lindquist KA, Wager TD, Kober H, Bliss-Moreau E, Barrett LF | The Behavioral and brain sciences | 22617651 | Behav Brain Sci | 2012 Jun | https://www.ncbi.nlm.nih.gov/pubmed/22617651 |
| Considering PTSD from the perspective of brain processes: a psychological construction approach. | Suvak MK, Barrett LF | Journal of traumatic stress | 21298725 | J Trauma Stress | 2011 Feb | https://www.ncbi.nlm.nih.gov/pubmed/21298725 |
| Bridging Token Identity Theory and Supervenience Theory Through Psychological Construction. | Barrett LF | Psychological inquiry | 21785534 | Psychol Inq | 2011 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/21785534 |
| Emotion Generation and Emotion Regulation: One or Two Depends on Your Point of View. | Gross JJ, Barrett LF | Emotion review : journal of the International Society for Research on Emotion | 21479078 | Emot Rev | 2011 Jan | https://www.ncbi.nlm.nih.gov/pubmed/21479078 |
| Words are a context for mental inference. | Betz N, Hoemann K, Barrett LF | Emotion (Washington, D.C.) | 30628815 | Emotion | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30628815 |
| Learning situated emotions. | Lebois LAM, Wilson-Mendenhall CD, Simmons WK, Barrett LF, Barsalou LW | Neuropsychologia | 29330097 | Neuropsychologia | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29330097 |
| The power of predictions: An emerging paradigm for psychological research. | Hutchinson JB, Barrett LF | Current directions in psychological science | 31749520 | Curr Dir Psychol Sci | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31749520 |
| Introducing a Face Sort Paradigm to Evaluate Age Differences in Emotion Perception. | Hoemann K, Vicaria IM, Gendron M, Stanley JT | The journals of gerontology. Series B, Psychological sciences and social sciences | 32211791 | J Gerontol B Psychol Sci Soc Sci | 2021 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/32211791 |
| Emotion words, emotion concepts, and emotional development in children: A constructionist hypothesis. | Hoemann K, Xu F, Barrett LF | Developmental psychology | 31464489 | Dev Psychol | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31464489 |
| Functional connectivity dynamics during film viewing reveal common networks for different emotional experiences. | Raz G, Touroutoglou A, Wilson-Mendenhall C, Gilam G, Lin T, Gonen T, Jacob Y, Atzil S, Admon R, Bleich-Cohen M, Maron-Katz A, Hendler T, Barrett LF | Cognitive, affective & behavioral neuroscience | 27142636 | Cogn Affect Behav Neurosci | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/27142636 |
| Internal valence modulates the speed of object recognition. | Panichello MF, Kveraga K, Chaumon M, Bar M, Barrett LF | Scientific reports | 28336933 | Sci Rep | 2017 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/28336933 |
| Establishing the situated features associated with perceived stress. | Lebois LA, Hertzog C, Slavich GM, Barrett LF, Barsalou LW | Acta psychologica | 27288834 | Acta Psychol (Amst) | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27288834 |
| The neural representation of typical and atypical experiences of negative images: comparing fear, disgust and morbid fascination. | Oosterwijk S, Lindquist KA, Adebayo M, Barrett LF | Social cognitive and affective neuroscience | 26180088 | Soc Cogn Affect Neurosci | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26180088 |
| Intrinsic connectivity in the human brain does not reveal networks for 'basic' emotions. | Touroutoglou A, Lindquist KA, Dickerson BC, Barrett LF | Social cognitive and affective neuroscience | 25680990 | Soc Cogn Affect Neurosci | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25680990 |
| Deficits in Face Recognition and Consequent Quality-of-Life Factors in Individuals with Cerebral Visual Impairment. | Bauer CM, Manley CE, Ravenscroft J, Cabral H, Dilks DD, Bex PJ | Vision (Basel, Switzerland) | 36810313 | Vision (Basel) | 2023 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/36810313 |
| Reduced stereotypicality and spared use of facial expression predictions for social evaluation in autism. | Robles M, Ramos-Grille I, Hervás A, Duran-Tauleria E, Galiano-Landeira J, Wormwood JB, Falter-Wagner CM, Chanes L | International journal of clinical and health psychology : IJCHP | 38426036 | Int J Clin Health Psychol | 2024 Apr-Jun | https://www.ncbi.nlm.nih.gov/pubmed/38426036 |
| Neural evidence that human emotions share core affective properties. | Wilson-Mendenhall CD, Barrett LF, Barsalou LW | Psychological science | 23603916 | Psychol Sci | 2013 Jun | https://www.ncbi.nlm.nih.gov/pubmed/23603916 |
| Dissociable large-scale networks anchored in the right anterior insula subserve affective experience and attention. | Touroutoglou A, Hollenbeck M, Dickerson BC, Feldman Barrett L | NeuroImage | 22361166 | Neuroimage | 2012 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/22361166 |
| What You Feel Influences What You See: The Role of Affective Feelings in Resolving Binocular Rivalry. | Anderson E, Siegel EH, Barrett LF | Journal of experimental social psychology | 21789027 | J Exp Soc Psychol | 2011 Jul | https://www.ncbi.nlm.nih.gov/pubmed/21789027 |
| States of mind: emotions, body feelings, and thoughts share distributed neural networks. | Oosterwijk S, Lindquist KA, Anderson E, Dautoff R, Moriguchi Y, Barrett LF | NeuroImage | 22677148 | Neuroimage | 2012 Sep | https://www.ncbi.nlm.nih.gov/pubmed/22677148 |
| Trends in ambulatory self-report: the role of momentary experience in psychosomatic medicine. | Conner TS, Barrett LF | Psychosomatic medicine | 22582330 | Psychosom Med | 2012 May | https://www.ncbi.nlm.nih.gov/pubmed/22582330 |
| The relation between valence and arousal in subjective experience. | Kuppens P, Tuerlinckx F, Russell JA, Barrett LF | Psychological bulletin | 23231533 | Psychol Bull | 2013 Jul | https://www.ncbi.nlm.nih.gov/pubmed/23231533 |
| Is there consistency and specificity of autonomic changes during emotional episodes? Guidance from the Conceptual Act Theory and psychophysiology. | Quigley KS, Barrett LF | Biological psychology | 24388802 | Biol Psychol | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24388802 |
| The Future of Psychology: Connecting Mind to Brain. | Barrett LF | Perspectives on psychological science : a journal of the Association for Psychological Science | 19844601 | Perspect Psychol Sci | 2009 Jul | https://www.ncbi.nlm.nih.gov/pubmed/19844601 |
| Understanding the Mind by Measuring the Brain: Lessons From Measuring Behavior (Commentary on Vul et al., 2009). | Barrett LF | Perspectives on psychological science : a journal of the Association for Psychological Science | 19672318 | Perspect Psychol Sci | 2009 May | https://www.ncbi.nlm.nih.gov/pubmed/19672318 |
| Variety in emotional life: within-category typicality of emotional experiences is associated with neural activity in large-scale brain networks. | Wilson-Mendenhall CD, Barrett LF, Barsalou LW | Social cognitive and affective neuroscience | 24563528 | Soc Cogn Affect Neurosci | 2015 Jan | https://www.ncbi.nlm.nih.gov/pubmed/24563528 |
| Amygdala task-evoked activity and task-free connectivity independently contribute to feelings of arousal. | Touroutoglou A, Bickart KC, Barrett LF, Dickerson BC | Human brain mapping | 24862171 | Hum Brain Mapp | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24862171 |
| Heightened sensitivity to emotional expressions in generalised anxiety disorder, compared to social anxiety disorder, and controls. | Bui E, Anderson E, Goetter EM, Campbell AA, Fischer LE, Barrett LF, Simon NM | Cognition & emotion | 26395075 | Cogn Emot | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26395075 |
| AFFECT AND THE FRAMING EFFECT WITHIN INDIVIDUALS OVER TIME: RISK TAKING IN A DYNAMIC INVESTMENT SIMULATION. | Seo MG, Goldfarb B, Barrett LF | Academy of Management journal. Academy of Management | 26412860 | Acad Manage J | 2010 Apr | https://www.ncbi.nlm.nih.gov/pubmed/26412860 |
| Brain network connectivity-behavioral relationships exhibit trait-like properties: Evidence from hippocampal connectivity and memory. | Touroutoglou A, Andreano JM, Barrett LF, Dickerson BC | Hippocampus | 26105075 | Hippocampus | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26105075 |
| Methodological recommendations for a heartbeat detection-based measure of interoceptive sensitivity. | Kleckner IR, Wormwood JB, Simmons WK, Barrett LF, Quigley KS | Psychophysiology | 26265009 | Psychophysiology | 2015 Nov | https://www.ncbi.nlm.nih.gov/pubmed/26265009 |
| Decision making from economic and signal detection perspectives: development of an integrated framework. | Lynn SK, Wormwood JB, Barrett LF, Quigley KS | Frontiers in psychology | 26217275 | Front Psychol | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26217275 |
| A Bayesian model of category-specific emotional brain responses. | Wager TD, Kang J, Johnson TD, Nichols TE, Satpute AB, Barrett LF | PLoS computational biology | 25853490 | PLoS Comput Biol | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25853490 |
| Involvement of Sensory Regions in Affective Experience: A Meta-Analysis. | Satpute AB, Kang J, Bickart KC, Yardley H, Wager TD, Barrett LF | Frontiers in psychology | 26696928 | Front Psychol | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26696928 |
| Emotional Granularity is Associated with Daily Experiential Diversity. | Hoemann K, Lee Y, Kuppens P, Gendron M, Boyd RL | Affective science | 37304562 | Affect Sci | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37304562 |
| Amygdala and fusiform gyrus temporal dynamics: responses to negative facial expressions. | Britton JC, Shin LM, Barrett LF, Rauch SL, Wright CI | BMC neuroscience | 18474111 | BMC Neurosci | 2008 May 12 | https://www.ncbi.nlm.nih.gov/pubmed/18474111 |
| She's emotional. He's having a bad day: attributional explanations for emotion stereotypes. | Barrett LF, Bliss-Moreau E | Emotion (Washington, D.C.) | 19803587 | Emotion | 2009 Oct | https://www.ncbi.nlm.nih.gov/pubmed/19803587 |
| Emotional granularity and borderline personality disorder. | Suvak MK, Litz BT, Sloan DM, Zanarini MC, Barrett LF, Hofmann SG | Journal of abnormal psychology | 21171723 | J Abnorm Psychol | 2011 May | https://www.ncbi.nlm.nih.gov/pubmed/21171723 |
| Out of sight but not out of mind: unseen affective faces influence evaluations and social impressions. | Anderson E, Siegel E, White D, Barrett LF | Emotion (Washington, D.C.) | 22506501 | Emotion | 2012 Dec | https://www.ncbi.nlm.nih.gov/pubmed/22506501 |
| Amygdala atrophy is prominent in early Alzheimer's disease and relates to symptom severity. | Poulin SP, Dautoff R, Morris JC, Barrett LF, Dickerson BC, Alzheimer's Disease Neuroimaging Initiative | Psychiatry research | 21920712 | Psychiatry Res | 2011 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/21920712 |
| The role of affective experience in work motivation: Test of a conceptual model. | Seo MG, Bartunek JM, Barrett LF | Journal of organizational behavior | 21785527 | J Organ Behav | 2010 Oct | https://www.ncbi.nlm.nih.gov/pubmed/21785527 |
| Constructing emotion: the experience of fear as a conceptual act. | Lindquist KA, Barrett LF | Psychological science | 18947355 | Psychol Sci | 2008 Sep | https://www.ncbi.nlm.nih.gov/pubmed/18947355 |
| Functional grouping and cortical-subcortical interactions in emotion: a meta-analysis of neuroimaging studies. | Kober H, Barrett LF, Joseph J, Bliss-Moreau E, Lindquist K, Wager TD | NeuroImage | 18579414 | Neuroimage | 2008 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/18579414 |
| Context is routinely encoded during emotion perception. | Barrett LF, Kensinger EA | Psychological science | 20424107 | Psychol Sci | 2010 Apr | https://www.ncbi.nlm.nih.gov/pubmed/20424107 |
| Variety is the spice of life: A psychological construction approach to understanding variability in emotion. | Barrett LF | Cognition & emotion | 20221411 | Cogn Emot | 2009 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/20221411 |
| Intrinsic amygdala-cortical functional connectivity predicts social network size in humans. | Bickart KC, Hollenbeck MC, Barrett LF, Dickerson BC | The Journal of neuroscience : the official journal of the Society for Neuroscience | 23077058 | J Neurosci | 2012 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/23077058 |
| Affective value and associative processing share a cortical substrate. | Shenhav A, Barrett LF, Bar M | Cognitive, affective & behavioral neuroscience | 23090717 | Cogn Affect Behav Neurosci | 2013 Mar | https://www.ncbi.nlm.nih.gov/pubmed/23090717 |
| A functional architecture of the human brain: emerging insights from the science of emotion. | Lindquist KA, Barrett LF | Trends in cognitive sciences | 23036719 | Trends Cogn Sci | 2012 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23036719 |
| The hundred-year emotion war: are emotions natural kinds or psychological constructions? Comment on Lench, Flores, and Bench (2011). | Lindquist KA, Siegel EH, Quigley KS, Barrett LF | Psychological bulletin | 23294094 | Psychol Bull | 2013 Jan | https://www.ncbi.nlm.nih.gov/pubmed/23294094 |
| Identification of discrete functional subregions of the human periaqueductal gray. | Satpute AB, Wager TD, Cohen-Adad J, Bianciardi M, Choi JK, Buhle JT, Wald LL, Barrett LF | Proceedings of the National Academy of Sciences of the United States of America | 24082116 | Proc Natl Acad Sci U S A | 2013 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/24082116 |
| Sex differences in the neural correlates of affective experience. | Moriguchi Y, Touroutoglou A, Dickerson BC, Barrett LF | Social cognitive and affective neuroscience | 23596188 | Soc Cogn Affect Neurosci | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/23596188 |
| Visual predictions in the orbitofrontal cortex rely on associative content. | Chaumon M, Kveraga K, Barrett LF, Bar M | Cerebral cortex (New York, N.Y. : 1991) | 23771980 | Cereb Cortex | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/23771980 |
| Conscious awareness is necessary for affective faces to influence social judgments. | Kleckner IR, Anderson EC, Betz NJ, Wormwood JB, Eskew RT Jr, Barrett LF | Journal of experimental social psychology | 31097841 | J Exp Soc Psychol | 2018 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31097841 |
| Stronger Functional Connectivity in the Default Mode and Salience Networks Is Associated With Youthful Memory in Superaging. | Zhang J, Andreano JM, Dickerson BC, Touroutoglou A, Barrett LF | Cerebral cortex (New York, N.Y. : 1991) | 31058917 | Cereb Cortex | 2020 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/31058917 |
| Risk Factors, Neuroanatomical Correlates, and Outcome of Neuropsychiatric Symptoms in Alzheimer's Disease. | Poulin SP, Bergeron D, Dickerson BC, Alzheimer’s Disease Neuroimaging Initiative | Journal of Alzheimer's disease : JAD | 28869463 | J Alzheimers Dis | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28869463 |
| Emotion words: Adding face value. | Fugate JMB, Gendron M, Nakashima SF, Barrett LF | Emotion (Washington, D.C.) | 28604040 | Emotion | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28604040 |
| The Brain Basis of Positive and Negative Affect: Evidence from a Meta-Analysis of the Human Neuroimaging Literature. | Lindquist KA, Satpute AB, Wager TD, Weber J, Barrett LF | Cerebral cortex (New York, N.Y. : 1991) | 25631056 | Cereb Cortex | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/25631056 |
| Unseen Affective Faces Influence Person Perception Judgments in Schizophrenia. | Kring AM, Siegel EH, Barrett LF | Clinical psychological science : a journal of the Association for Psychological Science | 25664225 | Clin Psychol Sci | 2014 Jul | https://www.ncbi.nlm.nih.gov/pubmed/25664225 |
| Cultural relativity in perceiving emotion from vocalizations. | Gendron M, Roberson D, van der Vyver JM, Barrett LF | Psychological science | 24501109 | Psychol Sci | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24501109 |
| Gender moderates the effect of oxytocin on social judgments. | Hoge EA, Anderson E, Lawson EA, Bui E, Fischer LE, Khadge SD, Barrett LF, Simon NM | Human psychopharmacology | 24911580 | Hum Psychopharmacol | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/24911580 |
| A shift in perspective: Decentering through mindful attention to imagined stressful events. | Lebois LA, Papies EK, Gopinath K, Cabanban R, Quigley KS, Krishnamurthy V, Barrett LF, Barsalou LW | Neuropsychologia | 26111487 | Neuropsychologia | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26111487 |
| Threat perception after the Boston Marathon bombings: The effects of personal relevance and conceptual framing. | Wormwood JB, Lynn SK, Feldman Barrett L, Quigley KS | Cognition & emotion | 25707419 | Cogn Emot | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/25707419 |
| Does language do more than communicate emotion? | Lindquist KA, Satpute AB, Gendron M | Current directions in psychological science | 25983400 | Curr Dir Psychol Sci | 2015 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/25983400 |
| Working memory capacity is associated with optimal adaptation of response bias to perceptual sensitivity in emotion perception. | Lynn SK, Ibagon C, Bui E, Palitz SA, Simon NM, Barrett LF | Emotion (Washington, D.C.) | 26461251 | Emotion | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26461251 |
| Emotion Words' Effect on Visual Awareness and Attention of Emotional Faces. | Fugate JMB, MacDonald C, O'Hare AJ | Frontiers in psychology | 32010012 | Front Psychol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/32010012 |
| Gender differences in oxytocin-associated disruption of decision bias during emotion perception. | Lynn SK, Hoge EA, Fischer LE, Barrett LF, Simon NM | Psychiatry research | 24814142 | Psychiatry Res | 2014 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/24814142 |
| How does this make you feel? A comparison of four affect induction procedures. | Zhang X, Yu HW, Barrett LF | Frontiers in psychology | 25071659 | Front Psychol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25071659 |
| Large-scale brain networks in affective and social neuroscience: towards an integrative functional architecture of the brain. | Barrett LF, Satpute AB | Current opinion in neurobiology | 23352202 | Curr Opin Neurobiol | 2013 Jun | https://www.ncbi.nlm.nih.gov/pubmed/23352202 |
| Atrophy in distinct corticolimbic networks in frontotemporal dementia relates to social impairments measured using the Social Impairment Rating Scale. | Bickart KC, Brickhouse M, Negreira A, Sapolsky D, Barrett LF, Dickerson BC | Journal of neurology, neurosurgery, and psychiatry | 24133285 | J Neurol Neurosurg Psychiatry | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24133285 |
| Conceptualizing and experiencing compassion. | Condon P, Feldman Barrett L | Emotion (Washington, D.C.) | 23914766 | Emotion | 2013 Oct | https://www.ncbi.nlm.nih.gov/pubmed/23914766 |
| Cultural variation in emotion perception is real: a response to Sauter, Eisner, Ekman, and Scott (2015). | Gendron M, Roberson D, Barrett LF | Psychological science | 25608863 | Psychol Sci | 2015 Mar | https://www.ncbi.nlm.nih.gov/pubmed/25608863 |
| Older and wiser? An affective science perspective on age-related challenges in financial decision making. | Weierich MR, Kensinger EA, Munnell AH, Sass SA, Dickerson BC, Wright CI, Barrett LF | Social cognitive and affective neuroscience | 20587596 | Soc Cogn Affect Neurosci | 2011 Apr | https://www.ncbi.nlm.nih.gov/pubmed/20587596 |
| Differential hemodynamic response in affective circuitry with aging: an FMRI study of novelty, valence, and arousal. | Moriguchi Y, Negreira A, Weierich M, Dautoff R, Dickerson BC, Wright CI, Barrett LF | Journal of cognitive neuroscience | 20521849 | J Cogn Neurosci | 2011 May | https://www.ncbi.nlm.nih.gov/pubmed/20521849 |
| Affective learning enhances activity and functional connectivity in early visual cortex. | Damaraju E, Huang YM, Barrett LF, Pessoa L | Neuropsychologia | 19410587 | Neuropsychologia | 2009 Oct | https://www.ncbi.nlm.nih.gov/pubmed/19410587 |
| See it with feeling: affective predictions during object perception. | Barrett LF, Bar M | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 19528014 | Philos Trans R Soc Lond B Biol Sci | 2009 May 12 | https://www.ncbi.nlm.nih.gov/pubmed/19528014 |
| Affective state influences perception by affecting decision parameters underlying bias and sensitivity. | Lynn SK, Zhang X, Barrett LF | Emotion (Washington, D.C.) | 22251054 | Emotion | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22251054 |
| A reliable protocol for the manual segmentation of the human amygdala and its subregions using ultra-high resolution MRI. | Entis JJ, Doerga P, Barrett LF, Dickerson BC | NeuroImage | 22245260 | Neuroimage | 2012 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/22245260 |
| Emotion words shape emotion percepts. | Gendron M, Lindquist KA, Barsalou L, Barrett LF | Emotion (Washington, D.C.) | 22309717 | Emotion | 2012 Apr | https://www.ncbi.nlm.nih.gov/pubmed/22309717 |
| The visual impact of gossip. | Anderson E, Siegel EH, Bliss-Moreau E, Barrett LF | Science (New York, N.Y.) | 21596956 | Science | 2011 Jun 17 | https://www.ncbi.nlm.nih.gov/pubmed/21596956 |
| Amygdala volume and social network size in humans. | Bickart KC, Wright CI, Dautoff RJ, Dickerson BC, Barrett LF | Nature neuroscience | 21186358 | Nat Neurosci | 2011 Feb | https://www.ncbi.nlm.nih.gov/pubmed/21186358 |
| Grounding emotion in situated conceptualization. | Wilson-Mendenhall CD, Barrett LF, Simmons WK, Barsalou LW | Neuropsychologia | 21192959 | Neuropsychologia | 2011 Apr | https://www.ncbi.nlm.nih.gov/pubmed/21192959 |
| Novel response patterns during repeated presentation of affective and neutral stimuli. | Satpute AB, Hanington L, Barrett LF | Social cognitive and affective neuroscience | 27928070 | Soc Cogn Affect Neurosci | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27928070 |
| Primary Interoceptive Cortex Activity during Simulated Experiences of the Body. | Wilson-Mendenhall CD, Henriques A, Barsalou LW, Barrett LF | Journal of cognitive neuroscience | 30277431 | J Cogn Neurosci | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30277431 |
| Emotion fingerprints or emotion populations? A meta-analytic investigation of autonomic features of emotion categories. | Siegel EH, Sands MK, Van den Noortgate W, Condon P, Chang Y, Dy J, Quigley KS, Barrett LF | Psychological bulletin | 29389177 | Psychol Bull | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29389177 |
| Semantic Clustering during Verbal Episodic Memory Encoding and Retrieval in Older Adults: One Cognitive Mechanism of Superaging. | Shaffer C, Andreano JM, Touroutoglou A, Barrett LF, Dickerson BC, Wong B | Brain sciences | 38391745 | Brain Sci | 2024 Feb 8 | https://www.ncbi.nlm.nih.gov/pubmed/38391745 |
| Use of somatic mutations to quantify random contributions to mouse development. | Zhou W, Tan Y, Anderson DJ, Crist EM, Ruohola-Baker H, Salipante SJ, Horwitz MS | BMC genomics | 23327737 | BMC Genomics | 2013 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/23327737 |
| Passenger mutations as a marker of clonal cell lineages in emerging neoplasia. | Salk JJ, Horwitz MS | Seminars in cancer biology | 20951806 | Semin Cancer Biol | 2010 Oct | https://www.ncbi.nlm.nih.gov/pubmed/20951806 |
| Phylogenetic fate mapping: theoretical and experimental studies applied to the development of mouse fibroblasts. | Salipante SJ, Thompson JM, Horwitz MS | Genetics | 18245843 | Genetics | 2008 Feb | https://www.ncbi.nlm.nih.gov/pubmed/18245843 |
| Phylogenetic analysis of developmental and postnatal mouse cell lineages. | Salipante SJ, Kas A, McMonagle E, Horwitz MS | Evolution & development | 20156285 | Evol Dev | 2010 Jan-Feb | https://www.ncbi.nlm.nih.gov/pubmed/20156285 |
| Clonal expansions in ulcerative colitis identify patients with neoplasia. | Salk JJ, Salipante SJ, Risques RA, Crispin DA, Li L, Bronner MP, Brentnall TA, Rabinovitch PS, Horwitz MS, Loeb LA | Proceedings of the National Academy of Sciences of the United States of America | 19926851 | Proc Natl Acad Sci U S A | 2009 Dec 8 | https://www.ncbi.nlm.nih.gov/pubmed/19926851 |
| Decoding cell lineage from acquired mutations using arbitrary deep sequencing. | Carlson CA, Kas A, Kirkwood R, Hays LE, Preston BD, Salipante SJ, Horwitz MS | Nature methods | 22120468 | Nat Methods | 2011 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/22120468 |
| Empty class II major histocompatibility complex created by peptide photolysis establishes the role of DM in peptide association. | Grotenbreg GM, Nicholson MJ, Fowler KD, Wilbuer K, Octavio L, Yang M, Chakraborty AK, Ploegh HL, Wucherpfennig KW | The Journal of biological chemistry | 17525157 | J Biol Chem | 2007 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/17525157 |
| The membrane environment can promote or suppress bistability in cell signaling networks. | Abel SM, Roose JP, Groves JT, Weiss A, Chakraborty AK | The journal of physical chemistry. B | 22332778 | J Phys Chem B | 2012 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/22332778 |
| Interaction of streptavidin-based peptide-MHC oligomers (tetramers) with cell-surface TCRs. | Stone JD, Artyomov MN, Chervin AS, Chakraborty AK, Eisen HN, Kranz DM | Journal of immunology (Baltimore, Md. : 1950) | 22102724 | J Immunol | 2011 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/22102724 |
| Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection. | Kosmrlj A, Read EL, Qi Y, Allen TM, Altfeld M, Deeks SG, Pereyra F, Carrington M, Walker BD, Chakraborty AK | Nature | 20445539 | Nature | 2010 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/20445539 |
| Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes. | Shekhar K, Ruberman CF, Ferguson AL, Barton JP, Kardar M, Chakraborty AK | Physical review. E, Statistical, nonlinear, and soft matter physics | 24483484 | Phys Rev E Stat Nonlin Soft Matter Phys | 2013 Dec | https://www.ncbi.nlm.nih.gov/pubmed/24483484 |
| The effect of mutations on the alloreactive T cell receptor/peptide-MHC interface structure: a molecular dynamics study. | Wolfson MY, Nam K, Chakraborty AK | The journal of physical chemistry. B | 21651302 | J Phys Chem B | 2011 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/21651302 |
| Neurotech for neuroscience: unifying concepts, organizing principles, and emerging tools. | Silver R, Boahen K, Grillner S, Kopell N, Olsen KL | The Journal of neuroscience : the official journal of the Society for Neuroscience | 17978017 | J Neurosci | 2007 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/17978017 |
| Silicon-Neuron Design: A Dynamical Systems Approach. | Arthur JV, Boahen K | IEEE transactions on circuits and systems. I, Regular papers : a publication of the IEEE Circuits and Systems Society | 21617741 | IEEE Trans Circuits Syst I Regul Pap | 2011 | https://www.ncbi.nlm.nih.gov/pubmed/21617741 |
| Space coding by gamma oscillations in the barn owl optic tectum. | Sridharan D, Boahen K, Knudsen EI | Journal of neurophysiology | 21325681 | J Neurophysiol | 2011 May | https://www.ncbi.nlm.nih.gov/pubmed/21325681 |
| A superposable silicon synapse with programmable reversal potential. | Benjamin BV, Arthur JV, Gao P, Merolla P, Boahen K | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 23366006 | Annu Int Conf IEEE Eng Med Biol Soc | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/23366006 |
| 'Til death do us part': coming to terms with symbiotic relationships. Forward. | Relman DA | Nature reviews. Microbiology | 19086265 | Nat Rev Microbiol | 2008 Oct | https://www.ncbi.nlm.nih.gov/pubmed/19086265 |
| Development of the human infant intestinal microbiota. | Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO | PLoS biology | 17594176 | PLoS Biol | 2007 Jul | https://www.ncbi.nlm.nih.gov/pubmed/17594176 |
| Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. | Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL | Proceedings of the National Academy of Sciences of the United States of America | 24062455 | Proc Natl Acad Sci U S A | 2013 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/24062455 |
| The human microbiome: ecosystem resilience and health. | Relman DA | Nutrition reviews | 22861804 | Nutr Rev | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22861804 |
| Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. | Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA 3rd, Loomer P, Armitage GC, Relman DA | The ISME journal | 22158393 | ISME J | 2012 May | https://www.ncbi.nlm.nih.gov/pubmed/22158393 |
| Strain-resolved community genomic analysis of gut microbial colonization in a premature infant. | Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF | Proceedings of the National Academy of Sciences of the United States of America | 21191099 | Proc Natl Acad Sci U S A | 2011 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/21191099 |
| Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. | Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP Jr, Rohwer F, Haynes M | Proceedings of the National Academy of Sciences of the United States of America | 20547834 | Proc Natl Acad Sci U S A | 2011 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/20547834 |
| Characterizing the oral and distal gut microbiota of the threatened southern sea otter (Enhydra lutris nereis) to enhance conservation practice. | Dudek NK, Switzer AD, Costello EK, Murray MJ, Tomoleoni JA, Staedler MM, Tinker MT, Relman DA | Conservation science and practice | 35382031 | Conserv Sci Pract | 2022 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35382031 |
| Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. | Pride DT, Salzman J, Relman DA | Environmental microbiology | 22583485 | Environ Microbiol | 2012 Sep | https://www.ncbi.nlm.nih.gov/pubmed/22583485 |
| Microbiology. Undernutrition--looking within for answers. | Relman DA | Science (New York, N.Y.) | 23363770 | Science | 2013 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/23363770 |
| Microbial invasion of the amniotic cavity in preeclampsia as assessed by cultivation and sequence-based methods. | DiGiulio DB, Gervasi M, Romero R, Mazaki-Tovi S, Vaisbuch E, Kusanovic JP, Seok KS, Gómez R, Mittal P, Gotsch F, Chaiworapongsa T, Oyarzún E, Kim CJ, Relman DA | Journal of perinatal medicine | 20482470 | J Perinat Med | 2010 Sep | https://www.ncbi.nlm.nih.gov/pubmed/20482470 |
| Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. | Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Relman DA, Sogin ML | PLoS genetics | 19023400 | PLoS Genet | 2008 Nov | https://www.ncbi.nlm.nih.gov/pubmed/19023400 |
| Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. | Dethlefsen L, Relman DA | Proceedings of the National Academy of Sciences of the United States of America | 20847294 | Proc Natl Acad Sci U S A | 2011 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/20847294 |
| The Landscape Ecology and Microbiota of the Human Nose, Mouth, and Throat. | Proctor DM, Relman DA | Cell host & microbe | 28407480 | Cell Host Microbe | 2017 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/28407480 |
| A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow. | Proctor DM, Fukuyama JA, Loomer PM, Armitage GC, Lee SA, Davis NM, Ryder MI, Holmes SP, Relman DA | Nature communications | 29445174 | Nat Commun | 2018 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/29445174 |
| SmashCell: a software framework for the analysis of single-cell amplified genome sequences. | Harrington ED, Arumugam M, Raes J, Bork P, Relman DA | Bioinformatics (Oxford, England) | 20966005 | Bioinformatics | 2010 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/20966005 |
| Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). | Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC | Genome research | 22434425 | Genome Res | 2012 Jun | https://www.ncbi.nlm.nih.gov/pubmed/22434425 |
| Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation. | DiGiulio DB, Romero R, Amogan HP, Kusanovic JP, Bik EM, Gotsch F, Kim CJ, Erez O, Edwin S, Relman DA | PloS one | 18725970 | PLoS One | 2008 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/18725970 |
| Prevalence and diversity of microbes in the amniotic fluid, the fetal inflammatory response, and pregnancy outcome in women with preterm pre-labor rupture of membranes. | DiGiulio DB, Romero R, Kusanovic JP, Gómez R, Kim CJ, Seok KS, Gotsch F, Mazaki-Tovi S, Vaisbuch E, Sanders K, Bik EM, Chaiworapongsa T, Oyarzún E, Relman DA | American journal of reproductive immunology (New York, N.Y. : 1989) | 20331587 | Am J Reprod Immunol | 2010 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/20331587 |
| Bacterial diversity in the oral cavity of 10 healthy individuals. | Bik EM, Long CD, Armitage GC, Loomer P, Emerson J, Mongodin EF, Nelson KE, Gill SR, Fraser-Liggett CM, Relman DA | The ISME journal | 20336157 | ISME J | 2010 Aug | https://www.ncbi.nlm.nih.gov/pubmed/20336157 |
| The application of ecological theory toward an understanding of the human microbiome. | Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA | Science (New York, N.Y.) | 22674335 | Science | 2012 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/22674335 |
| Microbiota-targeted therapies: an ecological perspective. | Lemon KP, Armitage GC, Relman DA, Fischbach MA | Science translational medicine | 22674555 | Sci Transl Med | 2012 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/22674555 |
| Microbiota's 'little helpers': bacteriophages and antibiotic-associated responses in the gut microbiome. | Sun CL, Relman DA | Genome biology | 23906048 | Genome Biol | 2013 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/23906048 |
| Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage. | Yan M, Pamp SJ, Fukuyama J, Hwang PH, Cho DY, Holmes S, Relman DA | Cell host & microbe | 24331461 | Cell Host Microbe | 2013 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/24331461 |
| Comparison study of gold nanohexapods, nanorods, and nanocages for photothermal cancer treatment. | Wang Y, Black KC, Luehmann H, Li W, Zhang Y, Cai X, Wan D, Liu SY, Li M, Kim P, Li ZY, Wang LV, Liu Y, Xia Y | ACS nano | 23383982 | ACS Nano | 2013 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/23383982 |
| A bioreducible polymer for efficient delivery of Fas-silencing siRNA into stem cell spheroids and enhanced therapeutic angiogenesis. | Shim MS, Bhang SH, Yoon K, Choi K, Xia Y | Angewandte Chemie (International ed. in English) | 23074025 | Angew Chem Int Ed Engl | 2012 Nov 19 | https://www.ncbi.nlm.nih.gov/pubmed/23074025 |
| Neovascularization in biodegradable inverse opal scaffolds with uniform and precisely controlled pore sizes. | Choi SW, Zhang Y, Macewan MR, Xia Y | Advanced healthcare materials | 23184495 | Adv Healthc Mater | 2013 Jan | https://www.ncbi.nlm.nih.gov/pubmed/23184495 |
| Nanofiber membranes with controllable microwells and structural cues and their use in forming cell microarrays and neuronal networks. | Xie J, Liu W, MacEwan MR, Yeh YC, Thomopoulos S, Xia Y | Small (Weinheim an der Bergstrasse, Germany) | 21294253 | Small | 2011 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/21294253 |
| Controlling the synthesis and assembly of silver nanostructures for plasmonic applications. | Rycenga M, Cobley CM, Zeng J, Li W, Moran CH, Zhang Q, Qin D, Xia Y | Chemical reviews | 21395318 | Chem Rev | 2011 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/21395318 |
| Three-dimensional scaffolds for tissue engineering: the importance of uniformity in pore size and structure. | Choi SW, Zhang Y, Xia Y | Langmuir : the ACS journal of surfaces and colloids | 21090781 | Langmuir | 2010 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/21090781 |
| Generation of hot spots with silver nanocubes for single-molecule detection by surface-enhanced Raman scattering. | Rycenga M, Xia X, Moran CH, Zhou F, Qin D, Li ZY, Xia Y | Angewandte Chemie (International ed. in English) | 21542081 | Angew Chem Int Ed Engl | 2011 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/21542081 |
| Au@Ag core-shell nanocubes with finely tuned and well-controlled sizes, shell thicknesses, and optical properties. | Ma Y, Li W, Cho EC, Li Z, Yu T, Zeng J, Xie Z, Xia Y | ACS nano | 20964400 | ACS Nano | 2010 Nov 23 | https://www.ncbi.nlm.nih.gov/pubmed/20964400 |
| A temperature-sensitive drug release system based on phase-change materials. | Choi SW, Zhang Y, Xia Y | Angewandte Chemie (International ed. in English) | 20839209 | Angew Chem Int Ed Engl | 2010 Oct 18 | https://www.ncbi.nlm.nih.gov/pubmed/20839209 |
| Seed-mediated synthesis of truncated gold decahedrons with a AuCl/oleylamine complex as precursor. | Ma Y, Zeng J, Li W, McKiernan M, Xie Z, Xia Y | Advanced materials (Deerfield Beach, Fla.) | 20301132 | Adv Mater | 2010 May 4 | https://www.ncbi.nlm.nih.gov/pubmed/20301132 |
| A SERS study of the molecular structure of alkanethiol monolayers on Ag nanocubes in the presence of aqueous glucose. | Rycenga M, McLellan JM, Xia Y | Chemical physics letters | 20160847 | Chem Phys Lett | 2009 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/20160847 |
| Stimuli-Responsive Materials for Controlled Release of Theranostic Agents. | Wang Y, Shim MS, Levinson NS, Sung HW, Xia Y | Advanced functional materials | 25477774 | Adv Funct Mater | 2014 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/25477774 |
| Radiolabeling of Gold Nanocages for Potential Applications in Tracking, Diagnosis, and Image-Guided Therapy. | Qiu J, Liu Y, Xia Y | Advanced healthcare materials | 33470560 | Adv Healthc Mater | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33470560 |
| Gold Nanomaterials at Work in Biomedicine. | Yang X, Yang M, Pang B, Vara M, Xia Y | Chemical reviews | 26293344 | Chem Rev | 2015 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/26293344 |
| SV119-gold nanocage conjugates: a new platform for targeting cancer cells via sigma-2 receptors. | Wang Y, Xu J, Xia X, Yang M, Vangveravong S, Chen J, Mach RH, Xia Y | Nanoscale | 22113350 | Nanoscale | 2012 Jan 21 | https://www.ncbi.nlm.nih.gov/pubmed/22113350 |
| Radioluminescent gold nanocages with controlled radioactivity for real-time in vivo imaging. | Wang Y, Liu Y, Luehmann H, Xia X, Wan D, Cutler C, Xia Y | Nano letters | 23360442 | Nano Lett | 2013 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/23360442 |
| Investigation of neovascularization in three-dimensional porous scaffolds in vivo by a combination of multiscale photoacoustic microscopy and optical coherence tomography. | Cai X, Zhang Y, Li L, Choi SW, MacEwan MR, Yao J, Kim C, Xia Y, Wang LV | Tissue engineering. Part C, Methods | 22838500 | Tissue Eng Part C Methods | 2013 Mar | https://www.ncbi.nlm.nih.gov/pubmed/22838500 |
| Using well-defined Ag nanocubes as substrates to quantify the spatial resolution and penetration depth of surface-enhanced Raman scattering imaging. | Moran CH, Rycenga M, Xia X, Cobley CM, Xia Y | Nanotechnology | 24334508 | Nanotechnology | 2014 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/24334508 |
| Microscale polymer bottles corked with a phase-change material for temperature-controlled release. | Hyun DC, Lu P, Choi SI, Jeong U, Xia Y | Angewandte Chemie (International ed. in English) | 23959631 | Angew Chem Int Ed Engl | 2013 Sep 27 | https://www.ncbi.nlm.nih.gov/pubmed/23959631 |
| Silica-coated dimers of silver nanospheres as surface-enhanced Raman scattering tags for imaging cancer cells. | Xia X, Li W, Zhang Y, Xia Y | Interface focus | 24427538 | Interface Focus | 2013 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/24427538 |
| Fabrication of Cell Patches Using Biodegradable Scaffolds with a Hexagonal Array of Interconnected Pores (SHAIPs). | Zhang YS, Yao J, Wang LV, Xia Y | Polymer | 24443593 | Polymer (Guildf) | 2014 Jan 14 | https://www.ncbi.nlm.nih.gov/pubmed/24443593 |
| Neurite outgrowth on electrospun nanofibers with uniaxial alignment: the effects of fiber density, surface coating, and supporting substrate. | Xie J, Liu W, MacEwan MR, Bridgman PC, Xia Y | ACS nano | 24444076 | ACS Nano | 2014 Feb 25 | https://www.ncbi.nlm.nih.gov/pubmed/24444076 |
| Chronic label-free volumetric photoacoustic microscopy of melanoma cells in three-dimensional porous scaffolds. | Zhang Y, Cai X, Choi SW, Kim C, Wang LV, Xia Y | Biomaterials | 20727581 | Biomaterials | 2010 Nov | https://www.ncbi.nlm.nih.gov/pubmed/20727581 |
| Production of Ag nanocubes on a scale of 0.1 g per batch by protecting the NaHS-mediated polyol synthesis with argon. | Zhang Q, Cobley C, Au L, McKiernan M, Schwartz A, Wen LP, Chen J, Xia Y | ACS applied materials & interfaces | 20305725 | ACS Appl Mater Interfaces | 2009 Sep | https://www.ncbi.nlm.nih.gov/pubmed/20305725 |
| Targeting gold nanocages to cancer cells for photothermal destruction and drug delivery. | Cobley CM, Au L, Chen J, Xia Y | Expert opinion on drug delivery | 20345327 | Expert Opin Drug Deliv | 2010 May | https://www.ncbi.nlm.nih.gov/pubmed/20345327 |
| Dissolving Ag from Au-Ag Alloy Nanoboxes with H(2)O(2): A Method for Both Tailoring the Optical Properties and Measuring the H(2)O(2) Concentration. | Zhang Q, Cobley CM, Zeng J, Wen LP, Chen J, Xia Y | The journal of physical chemistry. C, Nanomaterials and interfaces | 20495675 | J Phys Chem C Nanomater Interfaces | 2010 Mar 5 | https://www.ncbi.nlm.nih.gov/pubmed/20495675 |
| Uniform beads with controllable pore sizes for biomedical applications. | Choi SW, Yeh YC, Zhang Y, Sung HW, Xia Y | Small (Weinheim an der Bergstrasse, Germany) | 20578116 | Small | 2010 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/20578116 |
| Fabrication of Microbeads with a Controllable Hollow Interior and Porous Wall Using a Capillary Fluidic Device. | Choi SW, Zhang Y, Xia Y | Advanced functional materials | 20191106 | Adv Funct Mater | 2009 Sep 23 | https://www.ncbi.nlm.nih.gov/pubmed/20191106 |
| Synthesis and Optical Properties of Cubic Gold Nanoframes. | Au L, Chen Y, Zhou F, Camargo PH, Lim B, Li ZY, Ginger DS, Xia Y | Nano research | 20200595 | Nano Res | 2008 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/20200595 |
| Gold nanocages covered by smart polymers for controlled release with near-infrared light. | Yavuz MS, Cheng Y, Chen J, Cobley CM, Zhang Q, Rycenga M, Xie J, Kim C, Song KH, Schwartz AG, Wang LV, Xia Y | Nature materials | 19881498 | Nat Mater | 2009 Dec | https://www.ncbi.nlm.nih.gov/pubmed/19881498 |
| Improving biomedical imaging with gold nanocages. | Xia Y, Skrabalak SE | SPIE newsroom | 19704778 | SPIE Newsroom | 2008 May 12 | https://www.ncbi.nlm.nih.gov/pubmed/19704778 |
| Colloidal hollow spheres of conducting polymers with smooth surface and uniform, controllable sizes. | Bai MY, Cheng YJ, Wickline SA, Xia Y | Small (Weinheim an der Bergstrasse, Germany) | 19384880 | Small | 2009 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/19384880 |
| Nanofiber scaffolds with gradations in mineral content for mimicking the tendon-to-bone insertion site. | Li X, Xie J, Lipner J, Yuan X, Thomopoulos S, Xia Y | Nano letters | 19537737 | Nano Lett | 2009 Jul | https://www.ncbi.nlm.nih.gov/pubmed/19537737 |
| Correlated Rayleigh Scattering Spectroscopy and Scanning Electron Microscopy Studies of Au-Ag Bimetallic Nanoboxes and Nanocages. | Hu M, Chen J, Marquez M, Xia Y, Hartland GV | The journal of physical chemistry. C, Nanomaterials and interfaces | 18629346 | J Phys Chem C Nanomater Interfaces | 2007 | https://www.ncbi.nlm.nih.gov/pubmed/18629346 |
| The differentiation of embryonic stem cells seeded on electrospun nanofibers into neural lineages. | Xie J, Willerth SM, Li X, Macewan MR, Rader A, Sakiyama-Elbert SE, Xia Y | Biomaterials | 18930315 | Biomaterials | 2009 Jan | https://www.ncbi.nlm.nih.gov/pubmed/18930315 |
| Engineering the Properties of Metal Nanostructures via Galvanic Replacement Reactions. | Cobley CM, Xia Y | Materials science & engineering. R, Reports : a review journal | 21180400 | Mater Sci Eng R Rep | 2010 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/21180400 |
| Facile synthesis of Ag nanocubes and Au nanocages. | Skrabalak SE, Au L, Li X, Xia Y | Nature protocols | 17853874 | Nat Protoc | 2007 | https://www.ncbi.nlm.nih.gov/pubmed/17853874 |
| Facile synthesis of gold nanoparticles with narrow size distribution by using AuCl or AuBr as the precursor. | Lu X, Tuan HY, Korgel BA, Xia Y | Chemistry (Weinheim an der Bergstrasse, Germany) | 18058964 | Chemistry | 2008 | https://www.ncbi.nlm.nih.gov/pubmed/18058964 |
| Gold nanocages: synthesis, properties, and applications. | Skrabalak SE, Chen J, Sun Y, Lu X, Au L, Cobley CM, Xia Y | Accounts of chemical research | 18570442 | Acc Chem Res | 2008 Dec | https://www.ncbi.nlm.nih.gov/pubmed/18570442 |
| Tailoring the Optical and Catalytic Properties of Gold-Silver Nanoboxes and Nanocages by Introducing Palladium. | Cobley CM, Campbell DJ, Xia Y | Advanced materials (Deerfield Beach, Fla.) | 18568091 | Adv Mater | 2008 Feb | https://www.ncbi.nlm.nih.gov/pubmed/18568091 |
| Gold nanocages for cancer detection and treatment. | Skrabalak SE, Au L, Lu X, Li X, Xia Y | Nanomedicine (London, England) | 17976028 | Nanomedicine (Lond) | 2007 Oct | https://www.ncbi.nlm.nih.gov/pubmed/17976028 |
| Optical-resolution photoacoustic microscopy for volumetric and spectral analysis of histological and immunochemical samples. | Zhang YS, Yao J, Zhang C, Li L, Wang LV, Xia Y | Angewandte Chemie (International ed. in English) | 24961608 | Angew Chem Int Ed Engl | 2014 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/24961608 |
| Electrospun Nanofibers: New Concepts, Materials, and Applications. | Xue J, Xie J, Liu W, Xia Y | Accounts of chemical research | 28777535 | Acc Chem Res | 2017 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/28777535 |
| Vibrational response of Au-Ag nanoboxes and nanocages to ultrafast laser-induced heating. | Petrova H, Lin CH, Hu M, Chen J, Siekkinen AR, Xia Y, Sader JE, Hartland GV | Nano letters | 17358093 | Nano Lett | 2007 Apr | https://www.ncbi.nlm.nih.gov/pubmed/17358093 |
| Photoacoustic tomography of a rat cerebral cortex in vivo with au nanocages as an optical contrast agent. | Yang X, Skrabalak SE, Li ZY, Xia Y, Wang LV | Nano letters | 18020475 | Nano Lett | 2007 Dec | https://www.ncbi.nlm.nih.gov/pubmed/18020475 |
| Facile synthesis of tadpole-like nanostructures consisting of Au heads and Pd tails. | Camargo PH, Xiong Y, Ji L, Zuo JM, Xia Y | Journal of the American Chemical Society | 18027954 | J Am Chem Soc | 2007 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/18027954 |
| Quantifying the cellular uptake of antibody-conjugated Au nanocages by two-photon microscopy and inductively coupled plasma mass spectrometry. | Au L, Zhang Q, Cobley CM, Gidding M, Schwartz AG, Chen J, Xia Y | ACS nano | 19954236 | ACS Nano | 2010 Jan 26 | https://www.ncbi.nlm.nih.gov/pubmed/19954236 |
| Chitosan-Based Inverse Opals: Three-Dimensional Scaffolds with Uniform Pore Structures for Cell Culture. | Choi SW, Xie J, Xia Y | Advanced materials (Deerfield Beach, Fla.) | 19710950 | Adv Mater | 2009 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/19710950 |
| Metal-polymer hybrid colloidal particles with an eccentric structure. | Ohnuma A, Cho EC, Jiang M, Ohtani B, Xia Y | Langmuir : the ACS journal of surfaces and colloids | 19621917 | Langmuir | 2009 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/19621917 |
| The effects of size, shape, and surface functional group of gold nanostructures on their adsorption and internalization by cells. | Cho EC, Au L, Zhang Q, Xia Y | Small (Weinheim an der Bergstrasse, Germany) | 20029850 | Small | 2010 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/20029850 |
| Neurite outgrowth on nanofiber scaffolds with different orders, structures, and surface properties. | Xie J, MacEwan MR, Li X, Sakiyama-Elbert SE, Xia Y | ACS nano | 19397333 | ACS Nano | 2009 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/19397333 |
| Etching and dimerization: a simple and versatile route to dimers of silver nanospheres with a range of sizes. | Li W, Camargo PH, Au L, Zhang Q, Rycenga M, Xia Y | Angewandte Chemie (International ed. in English) | 19943304 | Angew Chem Int Ed Engl | 2010 | https://www.ncbi.nlm.nih.gov/pubmed/19943304 |
| Etching and growth: an intertwined pathway to silver nanocrystals with exotic shapes. | Cobley CM, Rycenga M, Zhou F, Li ZY, Xia Y | Angewandte Chemie (International ed. in English) | 19479923 | Angew Chem Int Ed Engl | 2009 | https://www.ncbi.nlm.nih.gov/pubmed/19479923 |
| A new theranostic system based on gold nanocages and phase-change materials with unique features for photoacoustic imaging and controlled release. | Moon GD, Choi SW, Cai X, Li W, Cho EC, Jeong U, Wang LV, Xia Y | Journal of the American Chemical Society | 21401092 | J Am Chem Soc | 2011 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/21401092 |
| An enzyme-sensitive probe for photoacoustic imaging and fluorescence detection of protease activity. | Xia X, Yang M, Oetjen LK, Zhang Y, Li Q, Chen J, Xia Y | Nanoscale | 21225037 | Nanoscale | 2011 Mar | https://www.ncbi.nlm.nih.gov/pubmed/21225037 |
| Inorganic nanoparticle-based contrast agents for molecular imaging. | Cho EC, Glaus C, Chen J, Welch MJ, Xia Y | Trends in molecular medicine | 21074494 | Trends Mol Med | 2010 Dec | https://www.ncbi.nlm.nih.gov/pubmed/21074494 |
| In vivo quantitative evaluation of the transport kinetics of gold nanocages in a lymphatic system by noninvasive photoacoustic tomography. | Cai X, Li W, Kim CH, Yuan Y, Wang LV, Xia Y | ACS nano | 22054348 | ACS Nano | 2011 Dec 27 | https://www.ncbi.nlm.nih.gov/pubmed/22054348 |
| Modifying the pores of an inverse opal scaffold with chitosan microstructures for truly three-dimensional cell culture. | Zhang Y, Choi SW, Xia Y | Macromolecular rapid communications | 22231861 | Macromol Rapid Commun | 2012 Feb 27 | https://www.ncbi.nlm.nih.gov/pubmed/22231861 |
| Gold Nanocages for Biomedical Applications. | Skrabalak SE, Chen J, Au L, Lu X, Li X, Xia Y | Advanced materials (Deerfield Beach, Fla.) | 18648528 | Adv Mater | 2007 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/18648528 |
| Morphological Evolution of Single-Crystal Ag Nanospheres during the Galvanic Replacement Reaction with HAuCl(4). | Kim MH, Lu X, Wiley B, Lee EP, Xia Y | The journal of physical chemistry. C, Nanomaterials and interfaces | 18787649 | J Phys Chem C Nanomater Interfaces | 2008 | https://www.ncbi.nlm.nih.gov/pubmed/18787649 |
| Facile synthesis of branched au nanostructures by templating against a self-destructive lattice of magnetic fe nanoparticles. | Li Z, Li W, Camargo PH, Xia Y | Angewandte Chemie (International ed. in English) | 18988222 | Angew Chem Int Ed Engl | 2008 | https://www.ncbi.nlm.nih.gov/pubmed/18988222 |
| Dark-field microscopy studies of single metal nanoparticles: understanding the factors that influence the linewidth of the localized surface plasmon resonance. | Hu M, Novo C, Funston A, Wang H, Staleva H, Zou S, Mulvaney P, Xia Y, Hartland GV | Journal of materials chemistry | 18846243 | J Mater Chem | 2008 | https://www.ncbi.nlm.nih.gov/pubmed/18846243 |
| A facile synthesis of asymmetric hybrid colloidal particles. | Ohnuma A, Cho EC, Camargo PH, Au L, Ohtani B, Xia Y | Journal of the American Chemical Society | 19140763 | J Am Chem Soc | 2009 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/19140763 |
| Gold nanocages as photothermal transducers for cancer treatment. | Chen J, Glaus C, Laforest R, Zhang Q, Yang M, Gidding M, Welch MJ, Xia Y | Small (Weinheim an der Bergstrasse, Germany) | 20225187 | Small | 2010 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/20225187 |
| Understanding the SERS Effects of Single Silver Nanoparticles and Their Dimers, One at a Time. | Rycenga M, Camargo PH, Li W, Moran CH, Xia Y | The journal of physical chemistry letters | 20368749 | J Phys Chem Lett | 2010 Feb 18 | https://www.ncbi.nlm.nih.gov/pubmed/20368749 |
| Bright three-photon luminescence from gold/silver alloyed nanostructures for bioimaging with negligible photothermal toxicity. | Tong L, Cobley CM, Chen J, Xia Y, Cheng JX | Angewandte Chemie (International ed. in English) | 20544899 | Angew Chem Int Ed Engl | 2010 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/20544899 |
| Facile synthesis of Ag nanocubes of 30 to 70 nm in edge length with CF(3)COOAg as a precursor. | Zhang Q, Li W, Wen LP, Chen J, Xia Y | Chemistry (Weinheim an der Bergstrasse, Germany) | 20593441 | Chemistry | 2010 Sep 3 | https://www.ncbi.nlm.nih.gov/pubmed/20593441 |
| Total synthesis of the polycyclic fungal metabolite (+/-)-communesin F. | Liu P, Seo JH, Weinreb SM | Angewandte Chemie (International ed. in English) | 20175174 | Angew Chem Int Ed Engl | 2010 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/20175174 |
| Measuring the SERS Enhancement Factors of Dimers with Different Structures Constructed from Silver Nanocubes. | Camargo PH, Au L, Rycenga M, Li W, Xia Y | Chemical physics letters | 20209069 | Chem Phys Lett | 2010 Jan | https://www.ncbi.nlm.nih.gov/pubmed/20209069 |
| Radially aligned, electrospun nanofibers as dural substitutes for wound closure and tissue regeneration applications. | Xie J, Macewan MR, Ray WZ, Liu W, Siewe DY, Xia Y | ACS nano | 20695478 | ACS Nano | 2010 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/20695478 |
| Electrospun nanofibers for regenerative medicine. | Liu W, Thomopoulos S, Xia Y | Advanced healthcare materials | 23184683 | Adv Healthc Mater | 2012 Jan 11 | https://www.ncbi.nlm.nih.gov/pubmed/23184683 |
| Protein-protected Au clusters as a new class of nanoscale biosensor for label-free fluorescence detection of proteases. | Wang Y, Wang Y, Zhou F, Kim P, Xia Y | Small (Weinheim an der Bergstrasse, Germany) | 22969016 | Small | 2012 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/22969016 |
| Gold nanocages as contrast agents for photoacoustic imaging. | Li W, Brown PK, Wang LV, Xia Y | Contrast media & molecular imaging | 22025337 | Contrast Media Mol Imaging | 2011 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/22025337 |
| 25th anniversary article: galvanic replacement: a simple and versatile route to hollow nanostructures with tunable and well-controlled properties. | Xia X, Wang Y, Ruditskiy A, Xia Y | Advanced materials (Deerfield Beach, Fla.) | 24027074 | Adv Mater | 2013 Nov 26 | https://www.ncbi.nlm.nih.gov/pubmed/24027074 |
| In Vivo Evaluation of Adipose-Derived Stromal Cells Delivered with a Nanofiber Scaffold for Tendon-to-Bone Repair. | Lipner J, Shen H, Cavinatto L, Liu W, Havlioglu N, Xia Y, Galatz LM, Thomopoulos S | Tissue engineering. Part A | 26414599 | Tissue Eng Part A | 2015 Nov | https://www.ncbi.nlm.nih.gov/pubmed/26414599 |
| Enhancing the Tactile and Near-Infrared Sensing Capabilities of Electrospun PVDF Nanofibers with the Use of Gold Nanocages. | Li H, Wu T, Xie M, Shi Y, Shen S, Zhao M, Yang X, Figueroa-Cosme LM, Ke Q, Xia Y | Journal of materials chemistry. C | 30911394 | J Mater Chem C Mater | 2018 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/30911394 |
| Multiple facets for extracellular matrix mimicking in regenerative medicine. | Zhang YS, Xia Y | Nanomedicine (London, England) | 25816873 | Nanomedicine (Lond) | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25816873 |
| Design and Fabrication of a Hierarchically Structured Scaffold for Tendon-to-Bone Repair. | Zhu C, Pongkitwitoon S, Qiu J, Thomopoulos S, Xia Y | Advanced materials (Deerfield Beach, Fla.) | 29534316 | Adv Mater | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29534316 |
| The mechanics of PLGA nanofiber scaffolds with biomimetic gradients in mineral for tendon-to-bone repair. | Lipner J, Liu W, Liu Y, Boyle J, Genin GM, Xia Y, Thomopoulos S | Journal of the mechanical behavior of biomedical materials | 25194525 | J Mech Behav Biomed Mater | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/25194525 |
| Emerging applications of phase-change materials (PCMs): teaching an old dog new tricks. | Hyun DC, Levinson NS, Jeong U, Xia Y | Angewandte Chemie (International ed. in English) | 24470287 | Angew Chem Int Ed Engl | 2014 Apr 7 | https://www.ncbi.nlm.nih.gov/pubmed/24470287 |
| Protein capsules with cross-linked, semipermeable, and enzyme-degradable surface barriers for controlled release. | Zhou J, Hyun DC, Liu H, Wu H, Xia Y | Macromolecular rapid communications | 24957975 | Macromol Rapid Commun | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/24957975 |
| Using SV119-gold nanocage conjugates to eradicate cancer stem cells through a combination of photothermal and chemo therapies. | Sun T, Wang Y, Wang Y, Xu J, Zhao X, Vangveravong S, Mach RH, Xia Y | Advanced healthcare materials | 24677807 | Adv Healthc Mater | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/24677807 |
| Nerve guidance conduits based on double-layered scaffolds of electrospun nanofibers for repairing the peripheral nervous system. | Xie J, MacEwan MR, Liu W, Jesuraj N, Li X, Hunter D, Xia Y | ACS applied materials & interfaces | 24806389 | ACS Appl Mater Interfaces | 2014 Jun 25 | https://www.ncbi.nlm.nih.gov/pubmed/24806389 |
| Recent Developments in Shape-Controlled Synthesis of Silver Nanocrystals. | Xia X, Zeng J, Zhang Q, Moran CH, Xia Y | The journal of physical chemistry. C, Nanomaterials and interfaces | 23105955 | J Phys Chem C Nanomater Interfaces | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/23105955 |
| Silver nanocube on gold microplate as a well-defined and highly active substrate for SERS detection. | Xia X, Rycenga M, Qin D, Xia Y | Journal of materials chemistry. C | 24187611 | J Mater Chem C Mater | 2013 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/24187611 |
| Non-invasive and in situ characterization of the degradation of biomaterial scaffolds by volumetric photoacoustic microscopy. | Zhang YS, Cai X, Yao J, Xing W, Wang LV, Xia Y | Angewandte Chemie (International ed. in English) | 24130155 | Angew Chem Int Ed Engl | 2014 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/24130155 |
| Measuring the Optical Absorption Cross-sections of Au-Ag Nanocages and Au Nanorods by Photoacoustic Imaging. | Cho EC, Kim C, Zhou F, Cobley CM, Song KH, Chen J, Li ZY, Wang LV, Xia Y | The journal of physical chemistry. C, Nanomaterials and interfaces | 19680423 | J Phys Chem C Nanomater Interfaces | 2009 May 28 | https://www.ncbi.nlm.nih.gov/pubmed/19680423 |
| Probing the surface-enhanced Raman scattering properties of Au-Ag nanocages at two different excitation wavelengths. | Rycenga M, Hou KK, Cobley CM, Schwartz AG, Camargo PH, Xia Y | Physical chemistry chemical physics : PCCP | 19588011 | Phys Chem Chem Phys | 2009 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/19588011 |
| Fine tuning the optical properties of Au-Ag nanocages by selectively etching Ag with oxygen and a water-soluble thiol. | Cho EC, Cobley CM, Rycenga M, Xia Y | Journal of materials chemistry | 19829745 | J Mater Chem | 2009 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/19829745 |
| Conductive Core-Sheath Nanofibers and Their Potential Application in Neural Tissue Engineering. | Xie J, Macewan MR, Willerth SM, Li X, Moran DW, Sakiyama-Elbert SE, Xia Y | Advanced functional materials | 19830261 | Adv Funct Mater | 2009 Jul 24 | https://www.ncbi.nlm.nih.gov/pubmed/19830261 |
| Electrospun nanofibers for neural tissue engineering. | Xie J, MacEwan MR, Schwartz AG, Xia Y | Nanoscale | 20648362 | Nanoscale | 2010 Jan | https://www.ncbi.nlm.nih.gov/pubmed/20648362 |
| In vivo molecular photoacoustic tomography of melanomas targeted by bioconjugated gold nanocages. | Kim C, Cho EC, Chen J, Song KH, Au L, Favazza C, Zhang Q, Cobley CM, Gao F, Xia Y, Wang LV | ACS nano | 20731439 | ACS Nano | 2010 Aug 24 | https://www.ncbi.nlm.nih.gov/pubmed/20731439 |
| A simple spectroscopic method for differentiating cellular uptakes of gold nanospheres and nanorods from their mixtures. | Cho EC, Liu Y, Xia Y | Angewandte Chemie (International ed. in English) | 20146292 | Angew Chem Int Ed Engl | 2010 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/20146292 |
| In vitro mineralization by preosteoblasts in poly(DL-lactide-co-glycolide) inverse opal scaffolds reinforced with hydroxyapatite nanoparticles. | Choi SW, Zhang Y, Thomopoulos S, Xia Y | Langmuir : the ACS journal of surfaces and colloids | 20450216 | Langmuir | 2010 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/20450216 |
| Synthesis of gold microplates using bovine serum albumin as a reductant and a stabilizer. | Au L, Lim B, Colletti P, Jun YS, Xia Y | Chemistry, an Asian journal | 19967737 | Chem Asian J | 2010 Jan 4 | https://www.ncbi.nlm.nih.gov/pubmed/19967737 |
| Probing the photothermal effect of gold-based nanocages with surface-enhanced Raman scattering (SERS). | Rycenga M, Wang Z, Gordon E, Cobley CM, Schwartz AG, Lo CS, Xia Y | Angewandte Chemie (International ed. in English) | 20014343 | Angew Chem Int Ed Engl | 2009 | https://www.ncbi.nlm.nih.gov/pubmed/20014343 |
| Quantifying the coverage density of poly(ethylene glycol) chains on the surface of gold nanostructures. | Xia X, Yang M, Wang Y, Zheng Y, Li Q, Chen J, Xia Y | ACS nano | 22148912 | ACS Nano | 2012 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/22148912 |
| Quantitative analysis of the role played by poly(vinylpyrrolidone) in seed-mediated growth of Ag nanocrystals. | Xia X, Zeng J, Oetjen LK, Li Q, Xia Y | Journal of the American Chemical Society | 22206387 | J Am Chem Soc | 2012 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/22206387 |
| Fabrication of cubic nanocages and nanoframes by dealloying Au/Ag alloy nanoboxes with an aqueous etchant based on Fe(NO3)3 or NH4OH. | Lu X, Au L, McLellan J, Li ZY, Marquez M, Xia Y | Nano letters | 17489641 | Nano Lett | 2007 Jun | https://www.ncbi.nlm.nih.gov/pubmed/17489641 |
| Immuno gold nanocages with tailored optical properties for targeted photothermal destruction of cancer cells. | Chen J, Wang D, Xi J, Au L, Siekkinen A, Warsen A, Li ZY, Zhang H, Xia Y, Li X | Nano letters | 17430005 | Nano Lett | 2007 May | https://www.ncbi.nlm.nih.gov/pubmed/17430005 |
| The role of transplacental microtransfusions of maternal lymphocytes in in utero HIV transmission. | Lee TH, Chafets DM, Biggar RJ, McCune JM, Busch MP | Journal of acquired immune deficiency syndromes (1999) | 20683195 | J Acquir Immune Defic Syndr | 2010 Oct | https://www.ncbi.nlm.nih.gov/pubmed/20683195 |
| Maternal alloantigens promote the development of tolerogenic fetal regulatory T cells in utero. | Mold JE, Michaëlsson J, Burt TD, Muench MO, Beckerman KP, Busch MP, Lee TH, Nixon DF, McCune JM | Science (New York, N.Y.) | 19056990 | Science | 2008 Dec 5 | https://www.ncbi.nlm.nih.gov/pubmed/19056990 |
| Critical loss of the balance between Th17 and T regulatory cell populations in pathogenic SIV infection. | Favre D, Lederer S, Kanwar B, Ma ZM, Proll S, Kasakow Z, Mold J, Swainson L, Barbour JD, Baskin CR, Palermo R, Pandrea I, Miller CJ, Katze MG, McCune JM | PLoS pathogens | 19214220 | PLoS Pathog | 2009 Feb | https://www.ncbi.nlm.nih.gov/pubmed/19214220 |
| Loss of T cell responses following long-term cryopreservation. | Owen RE, Sinclair E, Emu B, Heitman JW, Hirschkorn DF, Epling CL, Tan QX, Custer B, Harris JM, Jacobson MA, McCune JM, Martin JN, Hecht FM, Deeks SG, Norris PJ | Journal of immunological methods | 17707394 | J Immunol Methods | 2007 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/17707394 |
| In vivo imaging of mucosal CD4+ T cells using single photon emission computed tomography in a murine model of colitis. | Kanwar B, Gao DW, Hwang AB, Grenert JP, Williams SP, Franc B, McCune JM | Journal of immunological methods | 17964595 | J Immunol Methods | 2008 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/17964595 |
| Suppression of SIV-specific CD4+ T cells by infant but not adult macaque regulatory T cells: implications for SIV disease progression. | Hartigan-O'Connor DJ, Abel K, McCune JM | The Journal of experimental medicine | 17954571 | J Exp Med | 2007 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/17954571 |
| Tim-3 expression defines a novel population of dysfunctional T cells with highly elevated frequencies in progressive HIV-1 infection. | Jones RB, Ndhlovu LC, Barbour JD, Sheth PM, Jha AR, Long BR, Wong JC, Satkunarajah M, Schweneker M, Chapman JM, Gyenes G, Vali B, Hyrcza MD, Yue FY, Kovacs C, Sassi A, Loutfy M, Halpenny R, Persad D, Spotts G, Hecht FM, Chun TW, McCune JM, Kaul R, Rini JM, Nixon DF, Ostrowski MA | The Journal of experimental medicine | 19001139 | J Exp Med | 2008 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/19001139 |
| Variations in the heme oxygenase-1 microsatellite polymorphism are associated with plasma CD14 and viral load in HIV-infected African-Americans. | Seu L, Burt TD, Witte JS, Martin JN, Deeks SG, McCune JM | Genes and immunity | 22048453 | Genes Immun | 2012 Apr | https://www.ncbi.nlm.nih.gov/pubmed/22048453 |
| Regulation of T cell responses in the developing human fetus. | Michaëlsson J, Mold JE, McCune JM, Nixon DF | Journal of immunology (Baltimore, Md. : 1950) | 16670279 | J Immunol | 2006 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/16670279 |
| Human CD4+ regulatory T cells express lower levels of the IL-7 receptor alpha chain (CD127), allowing consistent identification and sorting of live cells. | Hartigan-O'Connor DJ, Poon C, Sinclair E, McCune JM | Journal of immunological methods | 17173927 | J Immunol Methods | 2007 Jan 30 | https://www.ncbi.nlm.nih.gov/pubmed/17173927 |
| Cytotrophoblast induction of arterial apoptosis and lymphangiogenesis in an in vivo model of human placentation. | Red-Horse K, Rivera J, Schanz A, Zhou Y, Winn V, Kapidzic M, Maltepe E, Okazaki K, Kochman R, Vo KC, Giudice L, Erlebacher A, McCune JM, Stoddart CA, Fisher SJ | The Journal of clinical investigation | 16998586 | J Clin Invest | 2006 Oct | https://www.ncbi.nlm.nih.gov/pubmed/16998586 |
| Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism. | Vujkovic-Cvijin I, Dunham RM, Iwai S, Maher MC, Albright RG, Broadhurst MJ, Hernandez RD, Lederman MM, Huang Y, Somsouk M, Deeks SG, Hunt PW, Lynch SV, McCune JM | Science translational medicine | 23843452 | Sci Transl Med | 2013 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/23843452 |
| Hydroxychloroquine is associated with impaired interferon-alpha and tumor necrosis factor-alpha production by plasmacytoid dendritic cells in systemic lupus erythematosus. | Sacre K, Criswell LA, McCune JM | Arthritis research & therapy | 22734582 | Arthritis Res Ther | 2012 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/22734582 |
| Single-Cell Mapping of Progressive Fetal-to-Adult Transition in Human Naive T Cells. | Bunis DG, Bronevetsky Y, Krow-Lucal E, Bhakta NR, Kim CC, Nerella S, Jones N, Mendoza VF, Bryson YJ, Gern JE, Rutishauser RL, Ye CJ, Sirota M, McCune JM, Burt TD | Cell reports | 33406429 | Cell Rep | 2021 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/33406429 |
| Continuous Antigenic Stimulation of DO11.10 TCR Transgenic Mice in the Presence or Absence of IL-1β: Possible Implications for Mechanisms of T Cell Depletion in HIV Disease. | Ladell K, Hazenberg MD, Fitch M, Emson C, McEvoy-Hein Asgarian BK, Mold JE, Miller C, Busch R, Price DA, Hellerstein MK, McCune JM | Journal of immunology (Baltimore, Md. : 1950) | 26416271 | J Immunol | 2015 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/26416271 |
| A functional variant in FCRL3 is associated with higher Fc receptor-like 3 expression on T cell subsets and rheumatoid arthritis disease activity. | Bajpai UD, Swainson LA, Mold JE, Graf JD, Imboden JB, McCune JM | Arthritis and rheumatism | 22392608 | Arthritis Rheum | 2012 Aug | https://www.ncbi.nlm.nih.gov/pubmed/22392608 |
| Identification of cinnabarinic acid as a novel endogenous aryl hydrocarbon receptor ligand that drives IL-22 production. | Lowe MM, Mold JE, Kanwar B, Huang Y, Louie A, Pollastri MP, Wang C, Patel G, Franks DG, Schlezinger J, Sherr DH, Silverstone AE, Hahn ME, McCune JM | PloS one | 24498387 | PLoS One | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24498387 |
| Composition and function of T cell subpopulations are slow to change despite effective antiretroviral treatment of HIV disease. | Emu B, Moretto WJ, Hoh R, Krone M, Martin JN, Nixon DF, Deeks SG, McCune JM | PloS one | 24465619 | PLoS One | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24465619 |
| Naive human T cells are activated and proliferate in response to the heme oxygenase-1 inhibitor tin mesoporphyrin. | Burt TD, Seu L, Mold JE, Kappas A, McCune JM | Journal of immunology (Baltimore, Md. : 1950) | 20921523 | J Immunol | 2010 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/20921523 |
| Evidence for persistent low-level viremia in individuals who control human immunodeficiency virus in the absence of antiretroviral therapy. | Hatano H, Delwart EL, Norris PJ, Lee TH, Dunn-Williams J, Hunt PW, Hoh R, Stramer SL, Linnen JM, McCune JM, Martin JN, Busch MP, Deeks SG | Journal of virology | 18945778 | J Virol | 2009 Jan | https://www.ncbi.nlm.nih.gov/pubmed/18945778 |
| Immune activation, CD4+ T cell counts, and viremia exhibit oscillatory patterns over time in patients with highly resistant HIV infection. | Kitchen CM, Yeghiazarian L, Hoh R, McCune JM, Sinclair E, Martin JN, Deeks SG | PloS one | 21701594 | PLoS One | 2011 | https://www.ncbi.nlm.nih.gov/pubmed/21701594 |
| Breaking free of sample size dogma to perform innovative translational research. | Bacchetti P, Deeks SG, McCune JM | Science translational medicine | 21677197 | Sci Transl Med | 2011 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/21677197 |
| IL-2 production correlates with effector cell differentiation in HIV-specific CD8+ T cells. | Nomura LE, Emu B, Hoh R, Haaland P, Deeks SG, Martin JN, McCune JM, Nixon DF, Maecker HT | AIDS research and therapy | 16859558 | AIDS Res Ther | 2006 Jul 21 | https://www.ncbi.nlm.nih.gov/pubmed/16859558 |
| Antiviral antibodies are necessary for control of simian immunodeficiency virus replication. | Miller CJ, Genescà M, Abel K, Montefiori D, Forthal D, Bost K, Li J, Favre D, McCune JM | Journal of virology | 17329327 | J Virol | 2007 May | https://www.ncbi.nlm.nih.gov/pubmed/17329327 |
| Central memory CD8+ T cells appear to have a shorter lifespan and reduced abundance as a function of HIV disease progression. | Ladell K, Hellerstein MK, Cesar D, Busch R, Boban D, McCune JM | Journal of immunology (Baltimore, Md. : 1950) | 18523254 | J Immunol | 2008 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/18523254 |
| Growth hormone enhances thymic function in HIV-1-infected adults. | Napolitano LA, Schmidt D, Gotway MB, Ameli N, Filbert EL, Ng MM, Clor JL, Epling L, Sinclair E, Baum PD, Li K, Killian ML, Bacchetti P, McCune JM | The Journal of clinical investigation | 18292808 | J Clin Invest | 2008 Mar | https://www.ncbi.nlm.nih.gov/pubmed/18292808 |
| Direct measurement of T-cell receptor repertoire diversity with AmpliCot. | Baum PD, McCune JM | Nature methods | 17060913 | Nat Methods | 2006 Nov | https://www.ncbi.nlm.nih.gov/pubmed/17060913 |
| Increased circulating interleukin-7 levels in HIV-1-infected women. | Napolitano LA, Burt TD, Bacchetti P, Barrón Y, French AL, Kovacs A, Anastos K, Young M, McCune JM, Greenblatt RM | Journal of acquired immune deficiency syndromes (1999) | 16284535 | J Acquir Immune Defic Syndr | 2005 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/16284535 |
| Increased carotid intima-media thickness in HIV patients is associated with increased cytomegalovirus-specific T-cell responses. | Hsue PY, Hunt PW, Sinclair E, Bredt B, Franklin A, Killian M, Hoh R, Martin JN, McCune JM, Waters DD, Deeks SG | AIDS (London, England) | 17117013 | AIDS | 2006 Nov 28 | https://www.ncbi.nlm.nih.gov/pubmed/17117013 |
| Prevalence of CXCR4 tropism among antiretroviral-treated HIV-1-infected patients with detectable viremia. | Hunt PW, Harrigan PR, Huang W, Bates M, Williamson DW, McCune JM, Price RW, Spudich SS, Lampiris H, Hoh R, Leigler T, Martin JN, Deeks SG | The Journal of infectious diseases | 16960780 | J Infect Dis | 2006 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/16960780 |
| Abacavir increases platelet reactivity via competitive inhibition of soluble guanylyl cyclase. | Baum PD, Sullam PM, Stoddart CA, McCune JM | AIDS (London, England) | 21941165 | AIDS | 2011 Nov 28 | https://www.ncbi.nlm.nih.gov/pubmed/21941165 |
| HIV disease progression correlates with the generation of dysfunctional naive CD8(low) T cells. | Favre D, Stoddart CA, Emu B, Hoh R, Martin JN, Hecht FM, Deeks SG, McCune JM | Blood | 21200021 | Blood | 2011 Feb 17 | https://www.ncbi.nlm.nih.gov/pubmed/21200021 |
| Measurement of absolute T cell receptor rearrangement diversity. | Baum PD, Young JJ, McCune JM | Journal of immunological methods | 21385585 | J Immunol Methods | 2011 May 31 | https://www.ncbi.nlm.nih.gov/pubmed/21385585 |
| A randomized, controlled trial of raltegravir intensification in antiretroviral-treated, HIV-infected patients with a suboptimal CD4+ T cell response. | Hatano H, Hayes TL, Dahl V, Sinclair E, Lee TH, Hoh R, Lampiris H, Hunt PW, Palmer S, McCune JM, Martin JN, Busch MP, Shacklett BL, Deeks SG | The Journal of infectious diseases | 21402547 | J Infect Dis | 2011 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/21402547 |
| Blood T-cell receptor diversity decreases during the course of HIV infection, but the potential for a diverse repertoire persists. | Baum PD, Young JJ, Schmidt D, Zhang Q, Hoh R, Busch M, Martin J, Deeks S, McCune JM | Blood | 22371879 | Blood | 2012 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/22371879 |
| SIV replication in the infected rhesus macaque is limited by the size of the preexisting TH17 cell compartment. | Hartigan-O'Connor DJ, Abel K, Van Rompay KK, Kanwar B, McCune JM | Science translational medicine | 22649090 | Sci Transl Med | 2012 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/22649090 |
| A role for cytomegalovirus-specific CD4+CX3CR1+ T cells and cytomegalovirus-induced T-cell immunopathology in HIV-associated atherosclerosis. | Sacre K, Hunt PW, Hsue PY, Maidji E, Martin JN, Deeks SG, Autran B, McCune JM | AIDS (London, England) | 22313962 | AIDS | 2012 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/22313962 |
| Expression of the autoimmune susceptibility gene FcRL3 on human regulatory T cells is associated with dysfunction and high levels of programmed cell death-1. | Swainson LA, Mold JE, Bajpai UD, McCune JM | Journal of immunology (Baltimore, Md. : 1950) | 20190142 | J Immunol | 2010 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/20190142 |
| Correlating cellular and molecular signatures of mucosal immunity that distinguish HIV controllers from noncontrollers. | Loke P, Favre D, Hunt PW, Leung JM, Kanwar B, Martin JN, Deeks SG, McCune JM | Blood | 20160163 | Blood | 2010 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/20160163 |
| Tryptophan catabolism by indoleamine 2,3-dioxygenase 1 alters the balance of TH17 to regulatory T cells in HIV disease. | Favre D, Mold J, Hunt PW, Kanwar B, Loke P, Seu L, Barbour JD, Lowe MM, Jayawardene A, Aweeka F, Huang Y, Douek DC, Brenchley JM, Martin JN, Hecht FM, Deeks SG, McCune JM | Science translational medicine | 20484731 | Sci Transl Med | 2010 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/20484731 |
| Cytomegalovirus-specific T cells persist at very high levels during long-term antiretroviral treatment of HIV disease. | Naeger DM, Martin JN, Sinclair E, Hunt PW, Bangsberg DR, Hecht F, Hsue P, McCune JM, Deeks SG | PloS one | 20126452 | PLoS One | 2010 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/20126452 |
| Gag p27-specific B- and T-cell responses in Simian immunodeficiency virus SIVagm-infected African green monkeys. | Lozano Reina JM, Favre D, Kasakow Z, Mayau V, Nugeyre MT, Ka T, Faye A, Miller CJ, Scott-Algara D, McCune JM, Barré-Sinoussi F, Diop OM, Müller-Trutwin MC | Journal of virology | 19109377 | J Virol | 2009 Mar | https://www.ncbi.nlm.nih.gov/pubmed/19109377 |
| Transcriptional profiling in pathogenic and non-pathogenic SIV infections reveals significant distinctions in kinetics and tissue compartmentalization. | Lederer S, Favre D, Walters KA, Proll S, Kanwar B, Kasakow Z, Baskin CR, Palermo R, McCune JM, Katze MG | PLoS pathogens | 19214219 | PLoS Pathog | 2009 Feb | https://www.ncbi.nlm.nih.gov/pubmed/19214219 |
| Persistent systemic inflammation and atypical enterocolitis in patients with NEMO syndrome. | Cheng LE, Kanwar B, Tcheurekdjian H, Grenert JP, Muskat M, Heyman MB, McCune JM, Wara DW | Clinical immunology (Orlando, Fla.) | 19375390 | Clin Immunol | 2009 Jul | https://www.ncbi.nlm.nih.gov/pubmed/19375390 |
| Suberoylanilide hydroxamic acid reactivates HIV from latently infected cells. | Contreras X, Schweneker M, Chen CS, McCune JM, Deeks SG, Martin J, Peterlin BM | The Journal of biological chemistry | 19136668 | J Biol Chem | 2009 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/19136668 |
| Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon. | Broadhurst MJ, Ardeshir A, Kanwar B, Mirpuri J, Gundra UM, Leung JM, Wiens KE, Vujkovic-Cvijin I, Kim CC, Yarovinsky F, Lerche NW, McCune JM, Loke P | PLoS pathogens | 23166490 | PLoS Pathog | 2012 | https://www.ncbi.nlm.nih.gov/pubmed/23166490 |
| Preclinical evaluation of HIV eradication strategies in the simian immunodeficiency virus-infected rhesus macaque: a pilot study testing inhibition of indoleamine 2,3-dioxygenase. | Dunham RM, Gordon SN, Vaccari M, Piatak M, Huang Y, Deeks SG, Lifson J, Franchini G, McCune JM | AIDS research and human retroviruses | 22924680 | AIDS Res Hum Retroviruses | 2013 Feb | https://www.ncbi.nlm.nih.gov/pubmed/22924680 |
| Cell-based measures of viral persistence are associated with immune activation and programmed cell death protein 1 (PD-1)-expressing CD4+ T cells. | Hatano H, Jain V, Hunt PW, Lee TH, Sinclair E, Do TD, Hoh R, Martin JN, McCune JM, Hecht F, Busch MP, Deeks SG | The Journal of infectious diseases | 23089590 | J Infect Dis | 2013 Jul | https://www.ncbi.nlm.nih.gov/pubmed/23089590 |
| IL-7 production in murine lymphatic endothelial cells and induction in the setting of peripheral lymphopenia. | Miller CN, Hartigan-O'Connor DJ, Lee MS, Laidlaw G, Cornelissen IP, Matloubian M, Coughlin SR, McDonald DM, McCune JM | International immunology | 23657000 | Int Immunol | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23657000 |
| Levels of circulating myeloid subpopulations and of heme oxygenase-1 do not predict CD4(+) T cell recovery after the initiation of antiretroviral therapy for HIV disease. | Seu L, Ortiz GM, Burt TD, Deeks SG, Martin JN, McCune JM | AIDS research and therapy | 25180041 | AIDS Res Ther | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25180041 |
| Human cell surface-AAV interactomes identify LRP6 as blood-brain barrier transcytosis receptor and immune cytokine IL3 as AAV9 binder. | Shay TF, Jang S, Brittain TJ, Chen X, Walker B, Tebbutt C, Fan Y, Wolfe DA, Arokiaraj CM, Sullivan EE, Ding X, Wang TY, Lei Y, Chuapoco MR, Chou TF, Gradinaru V | Nature communications | 39245720 | Nat Commun | 2024 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/39245720 |
| AAVs targeting human carbonic anhydrase IV enhance gene delivery to the brain. | Lin C, Chen X, Hoang JD, Ristic F, Fan Y, Jang S, Chung JHA, Sullivan EE, Gawda T, Kavvathas B, Tran I, Li Y, Steele AD, Shay TF, Gradinaru V | Cell reports | 41175373 | Cell Rep | 2025 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/41175373 |
| Machine learning-guided channelrhodopsin engineering enables minimally invasive optogenetics. | Bedbrook CN, Yang KK, Robinson JE, Mackey ED, Gradinaru V, Arnold FH | Nature methods | 31611694 | Nat Methods | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31611694 |
| Primate-conserved carbonic anhydrase IV and murine-restricted LY6C1 enable blood-brain barrier crossing by engineered viral vectors. | Shay TF, Sullivan EE, Ding X, Chen X, Ravindra Kumar S, Goertsen D, Brown D, Crosby A, Vielmetter J, Borsos M, Wolfe DA, Lam AW, Gradinaru V | Science advances | 37075114 | Sci Adv | 2023 Apr 21 | https://www.ncbi.nlm.nih.gov/pubmed/37075114 |
| Engineered AAVs for non-invasive gene delivery to rodent and non-human primate nervous systems. | Chen X, Ravindra Kumar S, Adams CD, Yang D, Wang T, Wolfe DA, Arokiaraj CM, Ngo V, Campos LJ, Griffiths JA, Ichiki T, Mazmanian SK, Osborne PB, Keast JR, Miller CT, Fox AS, Chiu IM, Gradinaru V | Neuron | 35643078 | Neuron | 2022 Jul 20 | https://www.ncbi.nlm.nih.gov/pubmed/35643078 |
| Spatial transcriptomics for profiling the tropism of viral vectors in tissues. | Jang MJ, Coughlin GM, Jackson CR, Chen X, Chuapoco MR, Vendemiatti JL, Wang AZ, Gradinaru V | Nature biotechnology | 36702899 | Nat Biotechnol | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36702899 |
| Next-generation hybridization chain reaction tools with enhanced sensitivities to detect challenging targets. | Singh C, Bali N, Coughlin GM, Xu J, Polansky JY, Herget U, Gilbert MS, Cammidge T, Spigolon G, Smirnova Y, Gradinaru V, Zinn K, Prober DA | bioRxiv : the preprint server for biology | 40964373 | bioRxiv | 2025 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/40964373 |
| Spatial genomics of AAV vectors reveals mechanism of transcriptional crosstalk that enables targeted delivery of large genetic cargo. | Coughlin GM, Borsos M, Barcelona BH, Appling N, Mayfield AMH, Mackey ED, Eser RA, Jackson CR, Chen X, Kumar SR, Gradinaru V | Nature biotechnology | 40113953 | Nat Biotechnol | 2026 Jan | https://www.ncbi.nlm.nih.gov/pubmed/40113953 |
| Monosynaptic tracing maps brain-wide afferent oligodendrocyte precursor cell connectivity. | Mount CW, Yalçın B, Cunliffe-Koehler K, Sundaresh S, Monje M | eLife | 31625910 | Elife | 2019 Oct 18 | https://www.ncbi.nlm.nih.gov/pubmed/31625910 |
| Maladaptive myelination promotes generalized epilepsy progression. | Knowles JK, Xu H, Soane C, Batra A, Saucedo T, Frost E, Tam LT, Fraga D, Ni L, Villar K, Talmi S, Huguenard JR, Monje M | Nature neuroscience | 35501379 | Nat Neurosci | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35501379 |
| Neuron-Glial Interactions in Health and Brain Cancer. | Pan Y, Monje M | Advanced biology | 35957525 | Adv Biol (Weinh) | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35957525 |
| The neurobiology of long COVID. | Monje M, Iwasaki A | Neuron | 36288726 | Neuron | 2022 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/36288726 |
| Microenvironmental interactions of oligodendroglial cells. | Yalçın B, Monje M | Developmental cell | 34192527 | Dev Cell | 2021 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/34192527 |
| Neural Signaling in Cancer. | Keough MB, Monje M | Annual review of neuroscience | 35259916 | Annu Rev Neurosci | 2022 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/35259916 |
| Mild respiratory SARS-CoV-2 infection can cause multi-lineage cellular dysregulation and myelin loss in the brain. | Fernández-Castañeda A, Lu P, Geraghty AC, Song E, Lee MH, Wood J, Yalçın B, Taylor KR, Dutton S, Acosta-Alvarez L, Ni L, Contreras-Esquivel D, Gehlhausen JR, Klein J, Lucas C, Mao T, Silva J, Peña-Hernández MA, Tabachnikova A, Takahashi T, Tabacof L, Tosto-Mancuso J, Breyman E, Kontorovich A, McCarthy D, Quezado M, Hefti M, Perl D, Folkerth R, Putrino D, Nath A, Iwasaki A, Monje M | bioRxiv : the preprint server for biology | 35043113 | bioRxiv | 2022 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/35043113 |
| Tumor inflammation-associated neurotoxicity. | Mahdi J, Dietrich J, Straathof K, Roddie C, Scott BJ, Davidson TB, Prolo LM, Batchelor TT, Campen CJ, Davis KL, Gust J, Lim M, Majzner RG, Park JR, Partap S, Ramakrishna S, Richards R, Schultz L, Vitanza NA, Wang LD, Mackall CL, Monje M | Nature medicine | 37024595 | Nat Med | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/37024595 |
| Emerging mechanistic underpinnings and therapeutic targets for chemotherapy-related cognitive impairment. | Gibson EM, Monje M | Current opinion in oncology | 31449084 | Curr Opin Oncol | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31449084 |
| Neuron-oligodendroglial interactions in health and malignant disease. | Taylor KR, Monje M | Nature reviews. Neuroscience | 37857838 | Nat Rev Neurosci | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37857838 |
| Remote neuronal activity drives glioma progression through SEMA4F. | Huang-Hobbs E, Cheng YT, Ko Y, Luna-Figueroa E, Lozzi B, Taylor KR, McDonald M, He P, Chen HC, Yang Y, Maleki E, Lee ZF, Murali S, Williamson MR, Choi D, Curry R, Bayley J, Woo J, Jalali A, Monje M, Noebels JL, Harmanci AS, Rao G, Deneen B | Nature | 37380778 | Nature | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37380778 |
| Neuronal activity-dependent mechanisms of small cell lung cancer pathogenesis. | Savchuk S, Gentry KM, Wang W, Carleton E, Biagi-Junior CAO, Luthria K, Yalçın B, Ni L, Farnsworth HC, Davis RA, Drexler R, Melms JC, Liu Y, Acosta-Alvarez L, Hartmann GG, Pavarino EC, LaBelle J, Woo PJ, Toland AM, Qu F, Kim YS, Filbin MG, Krasnow MA, Ligon KL, Izar B, Sage J, Sabatini BL, Monje M, Venkatesh HS | Nature | 40931074 | Nature | 2025 Oct | https://www.ncbi.nlm.nih.gov/pubmed/40931074 |
| Myelin plasticity in the ventral tegmental area is required for opioid reward. | Yalçın B, Pomrenze MB, Malacon K, Drexler R, Rogers AE, Shamardani K, Chau IJ, Taylor KR, Ni L, Contreras-Esquivel D, Malenka RC, Monje M | Nature | 38839962 | Nature | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38839962 |
| Cholinergic Neuronal Activity Promotes Diffuse Midline Glioma Growth through Muscarinic Signaling. | Drexler R, Drinnenberg A, Gavish A, Yalcin B, Shamardani K, Rogers A, Mancusi R, Taylor KR, Kim YS, Woo PJ, Ravel A, Tatlock E, Ramakrishnan C, Ayala-Sarmiento AE, Pacheco DRF, Siverts L, Daigle TL, Tasic B, Zeng H, Breunig JJ, Deisseroth K, Monje M | bioRxiv : the preprint server for biology | 39386427 | bioRxiv | 2024 Sep 24 | https://www.ncbi.nlm.nih.gov/pubmed/39386427 |
| Roadmap for the Emerging Field of Cancer Neuroscience. | Monje M, Borniger JC, D'Silva NJ, Deneen B, Dirks PB, Fattahi F, Frenette PS, Garzia L, Gutmann DH, Hanahan D, Hervey-Jumper SL, Hondermarck H, Hurov JB, Kepecs A, Knox SM, Lloyd AC, Magnon C, Saloman JL, Segal RA, Sloan EK, Sun X, Taylor MD, Tracey KJ, Trotman LC, Tuveson DA, Wang TC, White RA, Winkler F | Cell | 32302564 | Cell | 2020 Apr 16 | https://www.ncbi.nlm.nih.gov/pubmed/32302564 |
| NF1 mutation drives neuronal activity-dependent initiation of optic glioma. | Pan Y, Hysinger JD, Barron T, Schindler NF, Cobb O, Guo X, Yalçın B, Anastasaki C, Mulinyawe SB, Ponnuswami A, Scheaffer S, Ma Y, Chang KC, Xia X, Toonen JA, Lennon JJ, Gibson EM, Huguenard JR, Liau LM, Goldberg JL, Monje M, Gutmann DH | Nature | 34040258 | Nature | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34040258 |
| Histone Variant and Cell Context Determine H3K27M Reprogramming of the Enhancer Landscape and Oncogenic State. | Nagaraja S, Quezada MA, Gillespie SM, Arzt M, Lennon JJ, Woo PJ, Hovestadt V, Kambhampati M, Filbin MG, Suva ML, Nazarian J, Monje M | Molecular cell | 31588023 | Mol Cell | 2019 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/31588023 |
| Electrical and synaptic integration of glioma into neural circuits. | Venkatesh HS, Morishita W, Geraghty AC, Silverbush D, Gillespie SM, Arzt M, Tam LT, Espenel C, Ponnuswami A, Ni L, Woo PJ, Taylor KR, Agarwal A, Regev A, Brang D, Vogel H, Hervey-Jumper S, Bergles DE, Suvà ML, Malenka RC, Monje M | Nature | 31534222 | Nature | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31534222 |
| Remote neuronal activity drives glioma infiltration via Sema4f. | Huang-Hobbs E, Cheng YT, Ko Y, Luna-Figueroa E, Lozzi B, Taylor KR, McDonald M, He P, Chen HC, Yang Y, Maleki E, Lee ZF, Murali S, Williamson M, Choi D, Curry R, Bayley J, Woo J, Jalali A, Monje M, Noebels JL, Harmanci AS, Rao G, Deneen B | bioRxiv : the preprint server for biology | 36993539 | bioRxiv | 2023 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/36993539 |
| Cancer hallmarks intersect with neuroscience in the tumor microenvironment. | Hanahan D, Monje M | Cancer cell | 36917953 | Cancer Cell | 2023 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/36917953 |
| GD2-CAR T cell therapy for H3K27M-mutated diffuse midline gliomas. | Majzner RG, Ramakrishna S, Yeom KW, Patel S, Chinnasamy H, Schultz LM, Richards RM, Jiang L, Barsan V, Mancusi R, Geraghty AC, Good Z, Mochizuki AY, Gillespie SM, Toland AMS, Mahdi J, Reschke A, Nie EH, Chau IJ, Rotiroti MC, Mount CW, Baggott C, Mavroukakis S, Egeler E, Moon J, Erickson C, Green S, Kunicki M, Fujimoto M, Ehlinger Z, Reynolds W, Kurra S, Warren KE, Prabhu S, Vogel H, Rasmussen L, Cornell TT, Partap S, Fisher PG, Campen CJ, Filbin MG, Grant G, Sahaf B, Davis KL, Feldman SA, Mackall CL, Monje M | Nature | 35130560 | Nature | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/35130560 |
| Epigenetic neural glioblastoma enhances synaptic integration and predicts therapeutic vulnerability. | Drexler R, Khatri R, Sauvigny T, Mohme M, Maire CL, Ryba A, Zghaibeh Y, Dührsen L, Salviano-Silva A, Lamszus K, Westphal M, Gempt J, Wefers AK, Neumann J, Bode H, Hausmann F, Huber TB, Bonn S, Jütten K, Delev D, Weber KJ, Harter PN, Onken J, Vajkoczy P, Capper D, Wiestler B, Weller M, Snijder B, Buck A, Weiss T, Keough MB, Ni L, Monje M, Silverbush D, Hovestadt V, Suvà ML, Krishna S, Hervey-Jumper SL, Schüller U, Heiland DH, Hänzelmann S, Ricklefs FL | bioRxiv : the preprint server for biology | 37609137 | bioRxiv | 2023 Aug 7 | https://www.ncbi.nlm.nih.gov/pubmed/37609137 |
| Haploinsufficiency of NFKBIA reshapes the epigenome antipodal to the IDH mutation and imparts disease fate in diffuse gliomas. | Bredel M, Espinosa L, Kim H, Scholtens DM, McElroy JP, Rajbhandari R, Meng W, Kollmeyer TM, Malta TM, Quezada MA, Harsh GR, Lobo-Jarne T, Solé L, Merati A, Nagaraja S, Nair S, White JJ, Thudi NK, Fleming JL, Webb A, Natsume A, Ogawa S, Weber RG, Bertran J, Haque SJ, Hentschel B, Miller CR, Furnari FB, Chan TA, Grosu AL, Weller M, Barnholtz-Sloan JS, Monje M, Noushmehr H, Jenkins RB, Rogers CL, MacDonald DR, Pugh SL, Chakravarti A | Cell reports. Medicine | 37343523 | Cell Rep Med | 2023 Jun 20 | https://www.ncbi.nlm.nih.gov/pubmed/37343523 |
| Immunotherapy-related cognitive impairment after CAR T cell therapy in mice. | Geraghty AC, Acosta-Alvarez L, Rotiroti M, Dutton S, O'Dea MR, Woo PJ, Xu H, Shamardani K, Mancusi R, Ni L, Mulinyawe SB, Kim WJ, Liddelow SA, Majzner RG, Monje M | bioRxiv : the preprint server for biology | 38798554 | bioRxiv | 2024 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/38798554 |
| GABAergic neuron-to-glioma synapses in diffuse midline gliomas. | Barron T, Yalçın B, Su M, Byun YG, Gavish A, Shamardani K, Xu H, Ni L, Soni N, Mehta V, Maleki Jahan S, Kim YS, Taylor KR, Keough MB, Quezada MA, Geraghty AC, Mancusi R, Vo LT, Castañeda EH, Woo PJ, Petritsch CK, Vogel H, Kaila K, Monje M | Nature | 39972132 | Nature | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39972132 |
| Immunotherapy-related cognitive impairment after CAR T cell therapy in mice. | Geraghty AC, Acosta-Alvarez L, Rotiroti MC, Dutton S, O'Dea MR, Kim W, Trivedi V, Mancusi R, Shamardani K, Malacon K, Woo PJ, Martinez-Velez N, Pham T, Reche-Ley NN, Otubu G, Castenada EH, Nwangwu K, Xu H, Mulinyawe SB, Zamler DB, Ni L, Cross K, Rustenhoven J, Kipnis J, Liddelow SA, Mackall CL, Majzner RG, Monje M | Cell | 40359942 | Cell | 2025 Jun 12 | https://www.ncbi.nlm.nih.gov/pubmed/40359942 |
| Cholinergic neuronal activity promotes diffuse midline glioma growth through muscarinic signaling. | Drexler R, Drinnenberg A, Gavish A, Yalçin B, Shamardani K, Rogers AE, Mancusi R, Trivedi V, Taylor KR, Kim YS, Woo PJ, Soni N, Su M, Ravel A, Tatlock E, Midler A, Wu SH, Ramakrishnan C, Chen R, Ayala-Sarmiento AE, Fernandez Pacheco DR, Siverts L, Daigle TL, Tasic B, Zeng H, Breunig JJ, Deisseroth K, Monje M | Cell | 40541184 | Cell | 2025 Aug 21 | https://www.ncbi.nlm.nih.gov/pubmed/40541184 |
| Cancer neuroscience: State of the field, emerging directions. | Winkler F, Venkatesh HS, Amit M, Batchelor T, Demir IE, Deneen B, Gutmann DH, Hervey-Jumper S, Kuner T, Mabbott D, Platten M, Rolls A, Sloan EK, Wang TC, Wick W, Venkataramani V, Monje M | Cell | 37059069 | Cell | 2023 Apr 13 | https://www.ncbi.nlm.nih.gov/pubmed/37059069 |
| A prognostic neural epigenetic signature in high-grade glioma. | Drexler R, Khatri R, Sauvigny T, Mohme M, Maire CL, Ryba A, Zghaibeh Y, Dührsen L, Salviano-Silva A, Lamszus K, Westphal M, Gempt J, Wefers AK, Neumann JE, Bode H, Hausmann F, Huber TB, Bonn S, Jütten K, Delev D, Weber KJ, Harter PN, Onken J, Vajkoczy P, Capper D, Wiestler B, Weller M, Snijder B, Buck A, Weiss T, Göller PC, Sahm F, Menstel JA, Zimmer DN, Keough MB, Ni L, Monje M, Silverbush D, Hovestadt V, Suvà ML, Krishna S, Hervey-Jumper SL, Schüller U, Heiland DH, Hänzelmann S, Ricklefs FL | Nature medicine | 38760585 | Nat Med | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38760585 |
| Neuroligin-3 interaction with CSPG4 regulates normal and malignant glial precursors through PIEZO1. | Gillespie SM, Seok Kim Y, Geraghty AC, Yalçın B, Mancusi R, Hysinger J, English Ivec A, Reed J, Drexler R, Quezada M, Malacon K, Woo P, Mount C, Yang A, Lam M, Pan Y, Bradley Zuchero J, Trotter J, Monje M | bioRxiv : the preprint server for biology | 40791371 | bioRxiv | 2025 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/40791371 |
| Microglia in Cancer Therapy-Related Cognitive Impairment. | Gibson EM, Monje M | Trends in neurosciences | 33674135 | Trends Neurosci | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33674135 |
| Synaptic Communication in Brain Cancer. | Monje M | Cancer research | 32381657 | Cancer Res | 2020 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/32381657 |
| The bright and the dark side of myelin plasticity: Neuron-glial interactions in health and disease. | Monje M, Káradóttir RT | Seminars in cell & developmental biology | 33293232 | Semin Cell Dev Biol | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/33293232 |
| Therapeutic strategies for diffuse midline glioma from high-throughput combination drug screening. | Lin GL, Wilson KM, Ceribelli M, Stanton BZ, Woo PJ, Kreimer S, Qin EY, Zhang X, Lennon J, Nagaraja S, Morris PJ, Quezada M, Gillespie SM, Duveau DY, Michalowski AM, Shinn P, Guha R, Ferrer M, Klumpp-Thomas C, Michael S, McKnight C, Minhas P, Itkin Z, Raabe EH, Chen L, Ghanem R, Geraghty AC, Ni L, Andreasson KI, Vitanza NA, Warren KE, Thomas CJ, Monje M | Science translational medicine | 31748226 | Sci Transl Med | 2019 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/31748226 |
| Loss of Adaptive Myelination Contributes to Methotrexate Chemotherapy-Related Cognitive Impairment. | Geraghty AC, Gibson EM, Ghanem RA, Greene JJ, Ocampo A, Goldstein AK, Ni L, Yang T, Marton RM, Paşca SP, Greenberg ME, Longo FM, Monje M | Neuron | 31122677 | Neuron | 2019 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/31122677 |
| Transition to a mesenchymal state in neuroblastoma confers resistance to anti-GD2 antibody via reduced expression of ST8SIA1. | Mabe NW, Huang M, Dalton GN, Alexe G, Schaefer DA, Geraghty AC, Robichaud AL, Conway AS, Khalid D, Mader MM, Belk JA, Ross KN, Sheffer M, Linde MH, Ly N, Yao W, Rotiroti MC, Smith BAH, Wernig M, Bertozzi CR, Monje M, Mitsiades CS, Majeti R, Satpathy AT, Stegmaier K, Majzner RG | Nature cancer | 35817829 | Nat Cancer | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35817829 |
| The neuroscience of cancer. | Mancusi R, Monje M | Nature | 37316719 | Nature | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37316719 |
| The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location. | Liu I, Jiang L, Samuelsson ER, Marco Salas S, Beck A, Hack OA, Jeong D, Shaw ML, Englinger B, LaBelle J, Mire HM, Madlener S, Mayr L, Quezada MA, Trissal M, Panditharatna E, Ernst KJ, Vogelzang J, Gatesman TA, Halbert ME, Palova H, Pokorna P, Sterba J, Slaby O, Geyeregger R, Diaz A, Findlay IJ, Dun MD, Resnick A, Suvà ML, Jones DTW, Agnihotri S, Svedlund J, Koschmann C, Haberler C, Czech T, Slavc I, Cotter JA, Ligon KL, Alexandrescu S, Yung WKA, Arrillaga-Romany I, Gojo J, Monje M, Nilsson M, Filbin MG | Nature genetics | 36471067 | Nat Genet | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36471067 |
| Glioma synapses recruit mechanisms of adaptive plasticity. | Taylor KR, Barron T, Hui A, Spitzer A, Yalçin B, Ivec AE, Geraghty AC, Hartmann GG, Arzt M, Gillespie SM, Kim YS, Maleki Jahan S, Zhang H, Shamardani K, Su M, Ni L, Du PP, Woo PJ, Silva-Torres A, Venkatesh HS, Mancusi R, Ponnuswami A, Mulinyawe S, Keough MB, Chau I, Aziz-Bose R, Tirosh I, Suvà ML, Monje M | Nature | 37914930 | Nature | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/37914930 |
| Nf1 mutation disrupts activity-dependent oligodendroglial plasticity and motor learning in mice. | Pan Y, Hysinger JD, Yalçın B, Lennon JJ, Byun YG, Raghavan P, Schindler NF, Anastasaki C, Chatterjee J, Ni L, Xu H, Malacon K, Jahan SM, Ivec AE, Aghoghovwia BE, Mount CW, Nagaraja S, Scheaffer S, Attardi LD, Gutmann DH, Monje M | Nature neuroscience | 38816530 | Nat Neurosci | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38816530 |
| Dysregulated Microglial Synaptic Engulfment in Diffuse Midline Glioma. | Mancusi R, Tatlock E, Shamardani K, Acosta-Alvarez L, Drexler R, Trivedi V, Gavish A, Niizuma K, Soni N, Woo P, Mulinyawe S, Jahan S, Logan N, Malacon K, Byun YG, Geraghty A, Barron T, Taylor K, Monje M | bioRxiv : the preprint server for biology | 41497590 | bioRxiv | 2025 Dec 25 | https://www.ncbi.nlm.nih.gov/pubmed/41497590 |
| Developmental origins and emerging therapeutic opportunities for childhood cancer. | Filbin M, Monje M | Nature medicine | 30842674 | Nat Med | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30842674 |
| Activity Shapes Neural Circuit Form and Function: A Historical Perspective. | Pan Y, Monje M | The Journal of neuroscience : the official journal of the Society for Neuroscience | 31996470 | J Neurosci | 2020 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/31996470 |
| Diffuse Intrinsic Pontine Glioma: From Diagnosis to Next-Generation Clinical Trials. | Vitanza NA, Monje M | Current treatment options in neurology | 31290035 | Curr Treat Options Neurol | 2019 Jul 10 | https://www.ncbi.nlm.nih.gov/pubmed/31290035 |
| Neuronal hyperexcitability drives central and peripheral nervous system tumor progression in models of neurofibromatosis-1. | Anastasaki C, Mo J, Chen JK, Chatterjee J, Pan Y, Scheaffer SM, Cobb O, Monje M, Le LQ, Gutmann DH | Nature communications | 35589737 | Nat Commun | 2022 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/35589737 |
| Mild respiratory COVID can cause multi-lineage neural cell and myelin dysregulation. | Fernández-Castañeda A, Lu P, Geraghty AC, Song E, Lee MH, Wood J, O'Dea MR, Dutton S, Shamardani K, Nwangwu K, Mancusi R, Yalçın B, Taylor KR, Acosta-Alvarez L, Malacon K, Keough MB, Ni L, Woo PJ, Contreras-Esquivel D, Toland AMS, Gehlhausen JR, Klein J, Takahashi T, Silva J, Israelow B, Lucas C, Mao T, Peña-Hernández MA, Tabachnikova A, Homer RJ, Tabacof L, Tosto-Mancuso J, Breyman E, Kontorovich A, McCarthy D, Quezado M, Vogel H, Hefti MM, Perl DP, Liddelow S, Folkerth R, Putrino D, Nath A, Iwasaki A, Monje M | Cell | 35768006 | Cell | 2022 Jul 7 | https://www.ncbi.nlm.nih.gov/pubmed/35768006 |
| A light-gated transcriptional recorder for detecting cell-cell contacts. | Cho KF, Gillespie SM, Kalogriopoulos NA, Quezada MA, Jacko M, Monje M, Ting AY | eLife | 35311648 | Elife | 2022 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/35311648 |
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| In vivo non-invasive confocal fluorescence imaging beyond 1,700 nm using superconducting nanowire single-photon detectors. | Wang F, Ren F, Ma Z, Qu L, Gourgues R, Xu C, Baghdasaryan A, Li J, Zadeh IE, Los JWN, Fognini A, Qin-Dregely J, Dai H | Nature nanotechnology | 35606441 | Nat Nanotechnol | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35606441 |
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| Phosphorylcholine-conjugated gold-molecular clusters improve signal for Lymph Node NIR-II fluorescence imaging in preclinical cancer models. | Baghdasaryan A, Wang F, Ren F, Ma Z, Li J, Zhou X, Grigoryan L, Xu C, Dai H | Nature communications | 36153336 | Nat Commun | 2022 Sep 24 | https://www.ncbi.nlm.nih.gov/pubmed/36153336 |
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| Precise small-molecule cleavage of an r(CUG) repeat expansion in a myotonic dystrophy mouse model. | Angelbello AJ, Rzuczek SG, Mckee KK, Chen JL, Olafson H, Cameron MD, Moss WN, Wang ET, Disney MD | Proceedings of the National Academy of Sciences of the United States of America | 30926669 | Proc Natl Acad Sci U S A | 2019 Apr 16 | https://www.ncbi.nlm.nih.gov/pubmed/30926669 |
| Small molecule targeting of RNA structures in neurological disorders. | Angelbello AJ, Chen JL, Disney MD | Annals of the New York Academy of Sciences | 30964958 | Ann N Y Acad Sci | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/30964958 |
| Methods to identify and optimize small molecules interacting with RNA (SMIRNAs). | Ursu A, Vézina-Dawod S, Disney MD | Drug discovery today | 31356880 | Drug Discov Today | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31356880 |
| Rational Design of Small Molecules Targeting Oncogenic Noncoding RNAs from Sequence. | Disney MD, Angelbello AJ | Accounts of chemical research | 27993012 | Acc Chem Res | 2016 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/27993012 |
| The Hairpin Form of r(G(4)C(2))(exp) in c9ALS/FTD Is Repeat-Associated Non-ATG Translated and a Target for Bioactive Small Molecules. | Wang ZF, Ursu A, Childs-Disney JL, Guertler R, Yang WY, Bernat V, Rzuczek SG, Fuerst R, Zhang YJ, Gendron TF, Yildirim I, Dwyer BG, Rice JE, Petrucelli L, Disney MD | Cell chemical biology | 30503283 | Cell Chem Biol | 2019 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/30503283 |
| Optimization of the Linker Domain in a Dimeric Compound that Degrades an r(CUG) Repeat Expansion in Cells. | Benhamou RI, Abe M, Choudhary S, Meyer SM, Angelbello AJ, Disney MD | Journal of medicinal chemistry | 32657583 | J Med Chem | 2020 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/32657583 |
| Small-molecule targeted recruitment of a nuclease to cleave an oncogenic RNA in a mouse model of metastatic cancer. | Costales MG, Aikawa H, Li Y, Childs-Disney JL, Abegg D, Hoch DG, Pradeep Velagapudi S, Nakai Y, Khan T, Wang KW, Yildirim I, Adibekian A, Wang ET, Disney MD | Proceedings of the National Academy of Sciences of the United States of America | 31964809 | Proc Natl Acad Sci U S A | 2020 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/31964809 |
| A Toxic RNA Catalyzes the Cellular Synthesis of Its Own Inhibitor, Shunting It to Endogenous Decay Pathways. | Benhamou RI, Angelbello AJ, Wang ET, Disney MD | Cell chemical biology | 31981476 | Cell Chem Biol | 2020 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/31981476 |
| Progress toward the development of the small molecule equivalent of small interfering RNA. | Disney MD, Suresh BM, Benhamou RI, Childs-Disney JL | Current opinion in chemical biology | 32036231 | Curr Opin Chem Biol | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32036231 |
| Design, Optimization, and Study of Small Molecules That Target Tau Pre-mRNA and Affect Splicing. | Chen JL, Zhang P, Abe M, Aikawa H, Zhang L, Frank AJ, Zembryski T, Hubbs C, Park H, Withka J, Steppan C, Rogers L, Cabral S, Pettersson M, Wager TT, Fountain MA, Rumbaugh G, Childs-Disney JL, Disney MD | Journal of the American Chemical Society | 32364710 | J Am Chem Soc | 2020 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/32364710 |
| Fragment-Based Approaches to Identify RNA Binders. | Suresh BM, Taghavi A, Childs-Disney JL, Disney MD | Journal of medicinal chemistry | 37186875 | J Med Chem | 2023 May 25 | https://www.ncbi.nlm.nih.gov/pubmed/37186875 |
| Small molecule alteration of RNA sequence in cells and animals. | Guan L, Luo Y, Ja WW, Disney MD | Bioorganic & medicinal chemistry letters | 29079470 | Bioorg Med Chem Lett | 2018 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/29079470 |
| Development of pharmacophore models for small molecules targeting RNA: Application to the RNA repeat expansion in myotonic dystrophy type 1. | Angelbello AJ, González ÀL, Rzuczek SG, Disney MD | Bioorganic & medicinal chemistry letters | 27839685 | Bioorg Med Chem Lett | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27839685 |
| Precise small-molecule recognition of a toxic CUG RNA repeat expansion. | Rzuczek SG, Colgan LA, Nakai Y, Cameron MD, Furling D, Yasuda R, Disney MD | Nature chemical biology | 27941760 | Nat Chem Biol | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27941760 |
| Using Genome Sequence to Enable the Design of Medicines and Chemical Probes. | Angelbello AJ, Chen JL, Childs-Disney JL, Zhang P, Wang ZF, Disney MD | Chemical reviews | 29322778 | Chem Rev | 2018 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/29322778 |
| Structure-Specific Cleavage of an RNA Repeat Expansion with a Dimeric Small Molecule Is Advantageous over Sequence-Specific Recognition by an Oligonucleotide. | Benhamou RI, Angelbello AJ, Andrews RJ, Wang ET, Moss WN, Disney MD | ACS chemical biology | 31927948 | ACS Chem Biol | 2020 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/31927948 |
| A Toxic RNA Templates the Synthesis of Its Own Fluorogenic Inhibitor by Using a Bio-orthogonal Tetrazine Ligation in Cells and Tissues. | Angelbello AJ, Disney MD | ACS chemical biology | 32551539 | ACS Chem Biol | 2020 Jul 17 | https://www.ncbi.nlm.nih.gov/pubmed/32551539 |
| Drugging the RNA World. | Disney MD, Dwyer BG, Childs-Disney JL | Cold Spring Harbor perspectives in biology | 30385607 | Cold Spring Harb Perspect Biol | 2018 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/30385607 |
| Small Molecule Recognition and Tools to Study Modulation of r(CGG)(exp) in Fragile X-Associated Tremor Ataxia Syndrome. | Yang WY, He F, Strack RL, Oh SY, Frazer M, Jaffrey SR, Todd PK, Disney MD | ACS chemical biology | 27276216 | ACS Chem Biol | 2016 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/27276216 |
| Targeting RNA with Small Molecules To Capture Opportunities at the Intersection of Chemistry, Biology, and Medicine. | Disney MD | Journal of the American Chemical Society | 30896935 | J Am Chem Soc | 2019 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/30896935 |
| Design of a bioactive small molecule that targets r(AUUCU) repeats in spinocerebellar ataxia 10. | Yang WY, Gao R, Southern M, Sarkar PS, Disney MD | Nature communications | 27248057 | Nat Commun | 2016 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/27248057 |
| Poly(GP) proteins are a useful pharmacodynamic marker for C9ORF72-associated amyotrophic lateral sclerosis. | Gendron TF, Chew J, Stankowski JN, Hayes LR, Zhang YJ, Prudencio M, Carlomagno Y, Daughrity LM, Jansen-West K, Perkerson EA, O'Raw A, Cook C, Pregent L, Belzil V, van Blitterswijk M, Tabassian LJ, Lee CW, Yue M, Tong J, Song Y, Castanedes-Casey M, Rousseau L, Phillips V, Dickson DW, Rademakers R, Fryer JD, Rush BK, Pedraza O, Caputo AM, Desaro P, Palmucci C, Robertson A, Heckman MG, Diehl NN, Wiggs E, Tierney M, Braun L, Farren J, Lacomis D, Ladha S, Fournier CN, McCluskey LF, Elman LB, Toledo JB, McBride JD, Tiloca C, Morelli C, Poletti B, Solca F, Prelle A, Wuu J, Jockel-Balsarotti J, Rigo F, Ambrose C, Datta A, Yang W, Raitcheva D, Antognetti G, McCampbell A, Van Swieten JC, Miller BL, Boxer AL, Brown RH, Bowser R, Miller TM, Trojanowski JQ, Grossman M, Berry JD, Hu WT, Ratti A, Traynor BJ, Disney MD, Benatar M, Silani V, Glass JD, Floeter MK, Rothstein JD, Boylan KB, Petrucelli L | Science translational medicine | 28356511 | Sci Transl Med | 2017 Mar 29 | https://www.ncbi.nlm.nih.gov/pubmed/28356511 |
| Gini Coefficients as a Single Value Metric to Define Chemical Probe Selectivity. | Ursu A, Childs-Disney JL, Angelbello AJ, Costales MG, Meyer SM, Disney MD | ACS chemical biology | 32568503 | ACS Chem Biol | 2020 Aug 21 | https://www.ncbi.nlm.nih.gov/pubmed/32568503 |
| How We Think about Targeting RNA with Small Molecules. | Costales MG, Childs-Disney JL, Haniff HS, Disney MD | Journal of medicinal chemistry | 32212706 | J Med Chem | 2020 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/32212706 |
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| Targeted Degradation of a Hypoxia-Associated Non-coding RNA Enhances the Selectivity of a Small Molecule Interacting with RNA. | Costales MG, Suresh B, Vishnu K, Disney MD | Cell chemical biology | 31130520 | Cell Chem Biol | 2019 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/31130520 |
| The RNA encoding the microtubule-associated protein tau has extensive structure that affects its biology. | Chen JL, Moss WN, Spencer A, Zhang P, Childs-Disney JL, Disney MD | PloS one | 31291322 | PLoS One | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31291322 |
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| High-Throughput, High-Resolution Mapping of Protein Localization in Mammalian Brain by In Vivo Genome Editing. | Mikuni T, Nishiyama J, Sun Y, Kamasawa N, Yasuda R | Cell | 27180908 | Cell | 2016 Jun 16 | https://www.ncbi.nlm.nih.gov/pubmed/27180908 |
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| Virus-Mediated Genome Editing via Homology-Directed Repair in Mitotic and Postmitotic Cells in Mammalian Brain. | Nishiyama J, Mikuni T, Yasuda R | Neuron | 29056297 | Neuron | 2017 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/29056297 |
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| Canonical Wnt Signaling Suppresses Brain Endothelial Cell Transcytosis to Maintain Blood-Brain Barrier Integrity. | du Maine X, Gu C | bioRxiv : the preprint server for biology | 40161584 | bioRxiv | 2025 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/40161584 |
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| Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration. | Yoon YG, Dai P, Wohlwend J, Chang JB, Marblestone AH, Boyden ES | Frontiers in computational neuroscience | 29114215 | Front Comput Neurosci | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29114215 |
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| A novel flexible cuff-like microelectrode for dual purpose, acute and chronic electrical interfacing with the mouse cervical vagus nerve. | Caravaca AS, Tsaava T, Goldman L, Silverman H, Riggott G, Chavan SS, Bouton C, Tracey KJ, Desimone R, Boyden ES, Sohal HS, Olofsson PS | Journal of neural engineering | 28628030 | J Neural Eng | 2017 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28628030 |
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| Identification of Pathogenic Immune Cell Subsets Associated With Checkpoint Inhibitor-Induced Myocarditis. | Zhu H, Galdos FX, Lee D, Waliany S, Huang YV, Ryan J, Dang K, Neal JW, Wakelee HA, Reddy SA, Srinivas S, Lin LL, Witteles RM, Maecker HT, Davis MM, Nguyen PK, Wu SM | Circulation | 35762356 | Circulation | 2022 Jul 26 | https://www.ncbi.nlm.nih.gov/pubmed/35762356 |
| Stage-specific Effects of Bioactive Lipids on Human iPSC Cardiac Differentiation and Cardiomyocyte Proliferation. | Sharma A, Zhang Y, Buikema JW, Serpooshan V, Chirikian O, Kosaric N, Churko JM, Dzilic E, Shieh A, Burridge PW, Wu JC, Wu SM | Scientific reports | 29700394 | Sci Rep | 2018 Apr 26 | https://www.ncbi.nlm.nih.gov/pubmed/29700394 |
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| In Vivo Rescue of the Hematopoietic Niche By Pluripotent Stem Cell Complementation of Defective Osteoblast Compartments. | Chubb R, Oh J, Riley AK, Kimura T, Wu SM, Wu JY | Stem cells (Dayton, Ohio) | 28741855 | Stem Cells | 2017 Oct | https://www.ncbi.nlm.nih.gov/pubmed/28741855 |
| Untangling the Biology of Genetic Cardiomyopathies with Pluripotent Stem Cell Disease Models. | Buikema JW, Wu SM | Current cardiology reports | 28315121 | Curr Cardiol Rep | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28315121 |
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| Ageing hallmarks exhibit organ-specific temporal signatures. | Schaum N, Lehallier B, Hahn O, Pálovics R, Hosseinzadeh S, Lee SE, Sit R, Lee DP, Losada PM, Zardeneta ME, Fehlmann T, Webber JT, McGeever A, Calcuttawala K, Zhang H, Berdnik D, Mathur V, Tan W, Zee A, Tan M, Tabula Muris Consortium, Pisco AO, Karkanias J, Neff NF, Keller A, Darmanis S, Quake SR, Wyss-Coray T | Nature | 32669715 | Nature | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32669715 |
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| IGF1R variants associated with isolated single suture craniosynostosis. | Cunningham ML, Horst JA, Rieder MJ, Hing AV, Stanaway IB, Park SS, Samudrala R, Speltz ML | American journal of medical genetics. Part A | 21204214 | Am J Med Genet A | 2011 Jan | https://www.ncbi.nlm.nih.gov/pubmed/21204214 |
| Computational prediction of type III and IV secreted effectors in gram-negative bacteria. | McDermott JE, Corrigan A, Peterson E, Oehmen C, Niemann G, Cambronne ED, Sharp D, Adkins JN, Samudrala R, Heffron F | Infection and immunity | 20974833 | Infect Immun | 2011 Jan | https://www.ncbi.nlm.nih.gov/pubmed/20974833 |
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| Structural optimization and de novo design of dengue virus entry inhibitory peptides. | Costin JM, Jenwitheesuk E, Lok SM, Hunsperger E, Conrads KA, Fontaine KA, Rees CR, Rossmann MG, Isern S, Samudrala R, Michael SF | PLoS neglected tropical diseases | 20582308 | PLoS Negl Trop Dis | 2010 Jun 22 | https://www.ncbi.nlm.nih.gov/pubmed/20582308 |
| An HIV epidemic model based on viral load dynamics: value in assessing empirical trends in HIV virulence and community viral load. | Herbeck JT, Mittler JE, Gottlieb GS, Mullins JI | PLoS computational biology | 24945322 | PLoS Comput Biol | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24945322 |
| GPU-Q-J, a fast method for calculating root mean square deviation (RMSD) after optimal superposition. | Hung LH, Guerquin M, Samudrala R | BMC research notes | 21453553 | BMC Res Notes | 2011 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/21453553 |
| Pseudomonas aeruginosa uses a cyclic-di-GMP-regulated adhesin to reinforce the biofilm extracellular matrix. | Borlee BR, Goldman AD, Murakami K, Samudrala R, Wozniak DJ, Parsek MR | Molecular microbiology | 20088866 | Mol Microbiol | 2010 Feb | https://www.ncbi.nlm.nih.gov/pubmed/20088866 |
| Viral entry inhibitors block dengue antibody-dependent enhancement in vitro. | Nicholson CO, Costin JM, Rowe DK, Lin L, Jenwitheesuk E, Samudrala R, Isern S, Michael SF | Antiviral research | 21093488 | Antiviral Res | 2011 Jan | https://www.ncbi.nlm.nih.gov/pubmed/21093488 |
| Composite Sequence-Structure Stability Models as Screening Tools for Identifying Vulnerable Targets for HIV Drug and Vaccine Development. | Manocheewa S, Mittler JE, Samudrala R, Mullins JI | Viruses | 26556362 | Viruses | 2015 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/26556362 |
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| Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial. | Campbell MS, Mullins JI, Hughes JP, Celum C, Wong KG, Raugi DN, Sorensen S, Stoddard JN, Zhao H, Deng W, Kahle E, Panteleeff D, Baeten JM, McCutchan FE, Albert J, Leitner T, Wald A, Corey L, Lingappa JR, Partners in Prevention HSV/HIV Transmission Study Team | PloS one | 21399681 | PLoS One | 2011 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/21399681 |
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| Using Real-time Reporting to Investigate Visual Experiences in Dreams. | Konkoly KR, Al-Youssef S, Mazurek CY, Mallett R, Morris DJ, Gales A, Arnulf I, Oudiette D, Paller KA | Journal of cognitive neuroscience | 41026873 | J Cogn Neurosci | 2026 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/41026873 |
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| The evolution of red color vision is linked to coordinated rhodopsin tuning in lycaenid butterflies. | Liénard MA, Bernard GD, Allen A, Lassance JM, Song S, Childers RR, Yu N, Ye D, Stephenson A, Valencia-Montoya WA, Salzman S, Whitaker MRL, Calonje M, Zhang F, Pierce NE | Proceedings of the National Academy of Sciences of the United States of America | 33547236 | Proc Natl Acad Sci U S A | 2021 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/33547236 |
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| Caveolin-3 regulates compartmentation of cardiomyocyte beta2-adrenergic receptor-mediated cAMP signaling. | Wright PT, Nikolaev VO, O'Hara T, Diakonov I, Bhargava A, Tokar S, Schobesberger S, Shevchuk AI, Sikkel MB, Wilkinson R, Trayanova NA, Lyon AR, Harding SE, Gorelik J | Journal of molecular and cellular cardiology | 24345421 | J Mol Cell Cardiol | 2014 Feb | https://www.ncbi.nlm.nih.gov/pubmed/24345421 |
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| Myocardial infarct segmentation and reconstruction from 2D late-gadolinium enhanced magnetic resonance images. | Ukwatta E, Yuan J, Qiu W, Wu KC, Trayanova N, Vadakkumpadan F | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 25485423 | Med Image Comput Comput Assist Interv | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25485423 |
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| Computationally guided personalized targeted ablation of persistent atrial fibrillation. | Boyle PM, Zghaib T, Zahid S, Ali RL, Deng D, Franceschi WH, Hakim JB, Murphy MJ, Prakosa A, Zimmerman SL, Ashikaga H, Marine JE, Kolandaivelu A, Nazarian S, Spragg DD, Calkins H, Trayanova NA | Nature biomedical engineering | 31427780 | Nat Biomed Eng | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31427780 |
| Increased thin filament activation enhances alternans in human chronic atrial fibrillation. | Zile MA, Trayanova NA | American journal of physiology. Heart and circulatory physiology | 30141984 | Am J Physiol Heart Circ Physiol | 2018 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/30141984 |
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| Virtual electrophysiological study as a tool for evaluating efficacy of MRI techniques in predicting adverse arrhythmic events in ischemic patients. | Ukwatta E, Nikolov P, Zabihollahy F, Trayanova NA, Wright GA | Physics in medicine and biology | 30412472 | Phys Med Biol | 2018 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/30412472 |
| Substrate Spatial Complexity Analysis for the Prediction of Ventricular Arrhythmias in Patients With Ischemic Cardiomyopathy. | Okada DR, Miller J, Chrispin J, Prakosa A, Trayanova N, Jones S, Maggioni M, Wu KC | Circulation. Arrhythmia and electrophysiology | 32188287 | Circ Arrhythm Electrophysiol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32188287 |
| Accurate Conduction Velocity Maps and Their Association With Scar Distribution on Magnetic Resonance Imaging in Patients With Postinfarction Ventricular Tachycardias. | Aronis KN, Ali RL, Prakosa A, Ashikaga H, Berger RD, Hakim JB, Liang J, Tandri H, Teng F, Chrispin J, Trayanova NA | Circulation. Arrhythmia and electrophysiology | 32191131 | Circ Arrhythm Electrophysiol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32191131 |
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| Image-based Reconstruction of 3D Myocardial Infarct Geometry for Patient Specific Applications. | Ukwatta E, Rajchl M, White J, Pashakhanloo F, Herzka DA, McVeigh E, Lardo AC, Trayanova N, Vadakkumpadan F | Proceedings of SPIE--the International Society for Optical Engineering | 26633913 | Proc SPIE Int Soc Opt Eng | 2015 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/26633913 |
| Corrigendum to "effects of fibrosis morphology on reentrant ventricular tachycardia inducibility and simulation fidelity in patient-derived models". | Ringenberg J, Deo M, Filgueiras-Rama D, Pizarro G, Ibañez B, Peinado R, Trayanova N, Miller M, Merino JL, Berenfeld O, Devabhaktuni V | Clinical Medicine Insights. Cardiology | 25698881 | Clin Med Insights Cardiol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25698881 |
| Computational modeling of aberrant electrical activity following remuscularization with intramyocardially injected pluripotent stem cell-derived cardiomyocytes. | Yu JK, Liang JA, Weinberg SH, Trayanova NA | Journal of molecular and cellular cardiology | 34487753 | J Mol Cell Cardiol | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34487753 |
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| Myocardial Infarct Segmentation From Magnetic Resonance Images for Personalized Modeling of Cardiac Electrophysiology. | Ukwatta E, Arevalo H, Li K, Yuan J, Qiu W, Malamas P, Wu KC, Trayanova NA, Vadakkumpadan F | IEEE transactions on medical imaging | 26731693 | IEEE Trans Med Imaging | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/26731693 |
| Spatially Adaptive Multi-Scale Optimization for Local Parameter Estimation in Cardiac Electrophysiology. | Dhamala J, Arevalo HJ, Sapp J, Horacek M, Wu KC, Trayanova NA, Wang L | IEEE transactions on medical imaging | 28459685 | IEEE Trans Med Imaging | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/28459685 |
| Plakophilin-2 is required for transcription of genes that control calcium cycling and cardiac rhythm. | Cerrone M, Montnach J, Lin X, Zhao YT, Zhang M, Agullo-Pascual E, Leo-Macias A, Alvarado FJ, Dolgalev I, Karathanos TV, Malkani K, Van Opbergen CJM, van Bavel JJA, Yang HQ, Vasquez C, Tester D, Fowler S, Liang F, Rothenberg E, Heguy A, Morley GE, Coetzee WA, Trayanova NA, Ackerman MJ, van Veen TAB, Valdivia HH, Delmar M | Nature communications | 28740174 | Nat Commun | 2017 Jul 24 | https://www.ncbi.nlm.nih.gov/pubmed/28740174 |
| Opsin spectral sensitivity determines the effectiveness of optogenetic termination of ventricular fibrillation in the human heart: a simulation study. | Karathanos TV, Bayer JD, Wang D, Boyle PM, Trayanova NA | The Journal of physiology | 26941055 | J Physiol | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/26941055 |
| Towards personalized computational modelling of the fibrotic substrate for atrial arrhythmia. | Boyle PM, Zahid S, Trayanova NA | Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology | 28011841 | Europace | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28011841 |
| Modelling methodology of atrial fibrosis affects rotor dynamics and electrograms. | Roney CH, Bayer JD, Zahid S, Meo M, Boyle PM, Trayanova NA, Haïssaguerre M, Dubois R, Cochet H, Vigmond EJ | Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology | 28011842 | Europace | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/28011842 |
| A New MRI-Based Model of Heart Function with Coupled Hemodynamics and Application to Normal and Diseased Canine Left Ventricles. | Choi YJ, Constantino J, Vedula V, Trayanova N, Mittal R | Frontiers in bioengineering and biotechnology | 26442254 | Front Bioeng Biotechnol | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26442254 |
| Quantifying the uncertainty in model parameters using Gaussian process-based Markov chain Monte Carlo in cardiac electrophysiology. | Dhamala J, Arevalo HJ, Sapp J, Horácek BM, Wu KC, Trayanova NA, Wang L | Medical image analysis | 29843078 | Med Image Anal | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29843078 |
| Efficient preloading of the ventricles by a properly timed atrial contraction underlies stroke work improvement in the acute response to cardiac resynchronization therapy. | Hu Y, Gurev V, Constantino J, Trayanova N | Heart rhythm | 23928177 | Heart Rhythm | 2013 Dec | https://www.ncbi.nlm.nih.gov/pubmed/23928177 |
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| Epicardial Conduction Speed, Electrogram Abnormality, and Computed Tomography Attenuation Associations in Arrhythmogenic Right Ventricular Cardiomyopathy. | Ustunkaya T, Desjardins B, Wedan R, Chahal CAA, Zimmerman SL, Saju N, Zahid S, Sharma A, Han Y, Trayanova N, Marchlinski FE, Calkins H, Tandri H, Nazarian S | JACC. Clinical electrophysiology | 31648740 | JACC Clin Electrophysiol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31648740 |
| Optimal contrast-enhanced MRI image thresholding for accurate prediction of ventricular tachycardia using ex-vivo high resolution models. | Deng D, Nikolov P, Arevalo HJ, Trayanova NA | Computers in biology and medicine | 30301573 | Comput Biol Med | 2018 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/30301573 |
| From genetics to smart watches: developments in precision cardiology. | Trayanova N | Nature reviews. Cardiology | 30568275 | Nat Rev Cardiol | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30568275 |
| Initiation of a High-Frequency Jet Ventilation Strategy for Catheter Ablation for Atrial Fibrillation: Safety and Outcomes Data. | Sivasambu B, Hakim JB, Barodka V, Chrispin J, Berger RD, Ashikaga H, Ciuffo L, Tao S, Calkins H, Marine JE, Trayanova N, Spragg DD | JACC. Clinical electrophysiology | 30573114 | JACC Clin Electrophysiol | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30573114 |
| Degradation of T-Tubular Microdomains and Altered cAMP Compartmentation Lead to Emergence of Arrhythmogenic Triggers in Heart Failure Myocytes: An in silico Study. | Loucks AD, O'Hara T, Trayanova NA | Frontiers in physiology | 30564142 | Front Physiol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30564142 |
| The role of personalized atrial modeling in understanding atrial fibrillation mechanisms and improving treatment. | Aronis KN, Ali R, Trayanova NA | International journal of cardiology | 30755334 | Int J Cardiol | 2019 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/30755334 |
| Characterizing Conduction Channels in Postinfarction Patients Using a Personalized Virtual Heart. | Deng D, Prakosa A, Shade J, Nikolov P, Trayanova NA | Biophysical journal | 31447108 | Biophys J | 2019 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/31447108 |
| Biological substrate modification suppresses ventricular arrhythmias in a porcine model of chronic ischaemic cardiomyopathy. | Dawkins JF, Ehdaie A, Rogers R, Soetkamp D, Valle J, Holm K, Sanchez L, Tremmel I, Nawaz A, Shehata M, Wang X, Prakosa A, Yu J, Van Eyk JE, Trayanova N, Marbán E, Cingolani E | European heart journal | 35262692 | Eur Heart J | 2022 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/35262692 |
| Avian intervertebral disc arises from rostral sclerotome and lacks a nucleus pulposus: implications for evolution of the vertebrate disc. | Bruggeman BJ, Maier JA, Mohiuddin YS, Powers R, Lo Y, Guimarães-Camboa N, Evans SM, Harfe BD | Developmental dynamics : an official publication of the American Association of Anatomists | 22354863 | Dev Dyn | 2012 Apr | https://www.ncbi.nlm.nih.gov/pubmed/22354863 |
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| Tbx18 Regulates the Differentiation of Periductal Smooth Muscle Stroma and the Maintenance of Epithelial Integrity in the Prostate. | Bolt CC, Negi S, Guimarães-Camboa N, Zhang H, Troy JM, Lu X, Kispert A, Evans SM, Stubbs L | PloS one | 27120339 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27120339 |
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| Structures and functions of the inflammasome engine. | Wang L, Sharif H, Vora SM, Zheng Y, Wu H | The Journal of allergy and clinical immunology | 34092352 | J Allergy Clin Immunol | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34092352 |
| FDA-approved disulfiram inhibits pyroptosis by blocking gasdermin D pore formation. | Hu JJ, Liu X, Xia S, Zhang Z, Zhang Y, Zhao J, Ruan J, Luo X, Lou X, Bai Y, Wang J, Hollingsworth LR, Magupalli VG, Zhao L, Luo HR, Kim J, Lieberman J, Wu H | Nature immunology | 32367036 | Nat Immunol | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32367036 |
| NLRP3 cages revealed by full-length mouse NLRP3 structure control pathway activation. | Andreeva L, David L, Rawson S, Shen C, Pasricha T, Pelegrin P, Wu H | Cell | 34861190 | Cell | 2021 Dec 22 | https://www.ncbi.nlm.nih.gov/pubmed/34861190 |
| Cryo-EM Structure of Caspase-8 Tandem DED Filament Reveals Assembly and Regulation Mechanisms of the Death-Inducing Signaling Complex. | Fu TM, Li Y, Lu A, Li Z, Vajjhala PR, Cruz AC, Srivastava DB, DiMaio F, Penczek PA, Siegel RM, Stacey KJ, Egelman EH, Wu H | Molecular cell | 27746017 | Mol Cell | 2016 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/27746017 |
| Conformational flexibility and inhibitor binding to unphosphorylated interleukin-1 receptor-associated kinase 4 (IRAK4). | Wang L, Ferrao R, Li Q, Hatcher JM, Choi HG, Buhrlage SJ, Gray NS, Wu H | The Journal of biological chemistry | 30679311 | J Biol Chem | 2019 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/30679311 |
| Mechanism and Regulation of Gasdermin-Mediated Cell Death. | Xia S, Hollingsworth LR 4th, Wu H | Cold Spring Harbor perspectives in biology | 31451512 | Cold Spring Harb Perspect Biol | 2020 Mar 2 | https://www.ncbi.nlm.nih.gov/pubmed/31451512 |
| The palmitoylation of gasdermin D directs its membrane translocation and pore formation during pyroptosis. | Balasubramanian A, Hsu AY, Ghimire L, Tahir M, Devant P, Fontana P, Du G, Liu X, Fabin D, Kambara H, Xie X, Liu F, Hasegawa T, Xu R, Yu H, Chen M, Kolakowski S, Trauger S, Larsen MR, Wei W, Wu H, Kagan JC, Lieberman J, Luo HR | Science immunology | 38530158 | Sci Immunol | 2024 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/38530158 |
| NINJ1 mediates plasma membrane rupture by cutting and releasing membrane disks. | David L, Borges JP, Hollingsworth LR, Volchuk A, Jansen I, Garlick E, Steinberg BE, Wu H | Cell | 38614101 | Cell | 2024 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/38614101 |
| A structural atlas of death domain fold proteins reveals their versatile roles in biology and function. | Wu EJ, Kandalkar AT, Ehrmann JF, Tong AB, Zhang J, Cong Q, Wu H | Proceedings of the National Academy of Sciences of the United States of America | 39977327 | Proc Natl Acad Sci U S A | 2025 Feb 25 | https://www.ncbi.nlm.nih.gov/pubmed/39977327 |
| Mechanism of ubiquitin transfer promoted by TRAF6. | Fu TM, Shen C, Li Q, Zhang P, Wu H | Proceedings of the National Academy of Sciences of the United States of America | 29432170 | Proc Natl Acad Sci U S A | 2018 Feb 20 | https://www.ncbi.nlm.nih.gov/pubmed/29432170 |
| Structural principles of B cell antigen receptor assembly. | Dong Y, Pi X, Bartels-Burgahn F, Saltukoglu D, Liang Z, Yang J, Alt FW, Reth M, Wu H | Nature | 36228656 | Nature | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36228656 |
| Structure of cytoplasmic ring of nuclear pore complex by integrative cryo-EM and AlphaFold. | Fontana P, Dong Y, Pi X, Tong AB, Hecksel CW, Wang L, Fu TM, Bustamante C, Wu H | Science (New York, N.Y.) | 35679401 | Science | 2022 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/35679401 |
| Cryo-EM structures of ASC and NLRC4 CARD filaments reveal a unified mechanism of nucleation and activation of caspase-1. | Li Y, Fu TM, Lu A, Witt K, Ruan J, Shen C, Wu H | Proceedings of the National Academy of Sciences of the United States of America | 30279182 | Proc Natl Acad Sci U S A | 2018 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/30279182 |
| Chopped! Newfound GSDMD cleavage facilitates tolerance to food allergens. | Healy LB, Du G, Wu H | Trends in immunology | 37414717 | Trends Immunol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37414717 |
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| Pathogen blockade of TAK1 triggers caspase-8-dependent cleavage of gasdermin D and cell death. | Orning P, Weng D, Starheim K, Ratner D, Best Z, Lee B, Brooks A, Xia S, Wu H, Kelliher MA, Berger SB, Gough PJ, Bertin J, Proulx MM, Goguen JD, Kayagaki N, Fitzgerald KA, Lien E | Science (New York, N.Y.) | 30361383 | Science | 2018 Nov 30 | https://www.ncbi.nlm.nih.gov/pubmed/30361383 |
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| A single domain antibody fragment that recognizes the adaptor ASC defines the role of ASC domains in inflammasome assembly. | Schmidt FI, Lu A, Chen JW, Ruan J, Tang C, Wu H, Ploegh HL | The Journal of experimental medicine | 27069117 | J Exp Med | 2016 May 2 | https://www.ncbi.nlm.nih.gov/pubmed/27069117 |
| AID Recognizes Structured DNA for Class Switch Recombination. | Qiao Q, Wang L, Meng FL, Hwang JK, Alt FW, Wu H | Molecular cell | 28757211 | Mol Cell | 2017 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/28757211 |
| The Pore-Forming Protein Gasdermin D Regulates Interleukin-1 Secretion from Living Macrophages. | Evavold CL, Ruan J, Tan Y, Xia S, Wu H, Kagan JC | Immunity | 29195811 | Immunity | 2018 Jan 16 | https://www.ncbi.nlm.nih.gov/pubmed/29195811 |
| Phase separation drives RNA virus-induced activation of the NLRP6 inflammasome. | Shen C, Li R, Negro R, Cheng J, Vora SM, Fu TM, Wang A, He K, Andreeva L, Gao P, Tian Z, Flavell RA, Zhu S, Wu H | Cell | 34678144 | Cell | 2021 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/34678144 |
| STING condensates on ER limit IFN response. | Andreeva L, Wu H | Nature cell biology | 33833430 | Nat Cell Biol | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33833430 |
| Gasdermin D pore structure reveals preferential release of mature interleukin-1. | Xia S, Zhang Z, Magupalli VG, Pablo JL, Dong Y, Vora SM, Wang L, Fu TM, Jacobson MP, Greka A, Lieberman J, Ruan J, Wu H | Nature | 33883744 | Nature | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33883744 |
| Mechanism of filament formation in UPA-promoted CARD8 and NLRP1 inflammasomes. | Robert Hollingsworth L, David L, Li Y, Griswold AR, Ruan J, Sharif H, Fontana P, Orth-He EL, Fu TM, Bachovchin DA, Wu H | Nature communications | 33420033 | Nat Commun | 2021 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/33420033 |
| HDAC6 mediates an aggresome-like mechanism for NLRP3 and pyrin inflammasome activation. | Magupalli VG, Negro R, Tian Y, Hauenstein AV, Di Caprio G, Skillern W, Deng Q, Orning P, Alam HB, Maliga Z, Sharif H, Hu JJ, Evavold CL, Kagan JC, Schmidt FI, Fitzgerald KA, Kirchhausen T, Li Y, Wu H | Science (New York, N.Y.) | 32943500 | Science | 2020 Sep 18 | https://www.ncbi.nlm.nih.gov/pubmed/32943500 |
| Higher-order assemblies in innate immune and inflammatory signaling: A general principle in cell biology. | Shi M, Zhang P, Vora SM, Wu H | Current opinion in cell biology | 32272435 | Curr Opin Cell Biol | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32272435 |
| Mechanism of TRPM2 channel gating revealed by cryo-EM. | Xia S, Wang L, Fu TM, Wu H | The FEBS journal | 31144442 | FEBS J | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31144442 |
| Assembly mechanism of the CARMA1-BCL10-MALT1-TRAF6 signalosome. | David L, Li Y, Ma J, Garner E, Zhang X, Wu H | Proceedings of the National Academy of Sciences of the United States of America | 29382759 | Proc Natl Acad Sci U S A | 2018 Feb 13 | https://www.ncbi.nlm.nih.gov/pubmed/29382759 |
| Structural and mechanistic elucidation of inflammasome signaling by cryo-EM. | Shen C, Sharif H, Xia S, Wu H | Current opinion in structural biology | 31128494 | Curr Opin Struct Biol | 2019 Oct | https://www.ncbi.nlm.nih.gov/pubmed/31128494 |
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| SERPINB1-mediated checkpoint of inflammatory caspase activation. | Choi YJ, Kim S, Choi Y, Nielsen TB, Yan J, Lu A, Ruan J, Lee HR, Wu H, Spellberg B, Jung JU | Nature immunology | 30692621 | Nat Immunol | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30692621 |
| Mimicry by a viral RHIM. | Mompeán M, Bozkurt G, Wu H | EMBO reports | 30665943 | EMBO Rep | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30665943 |
| Cryo-EM structure of the gasdermin A3 membrane pore. | Ruan J, Xia S, Liu X, Lieberman J, Wu H | Nature | 29695864 | Nature | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/29695864 |
| Understanding CARD Tricks in Apoptosomes. | Wang L, Qiao Q, Wu H | Structure (London, England : 1993) | 28380338 | Structure | 2017 Apr 4 | https://www.ncbi.nlm.nih.gov/pubmed/28380338 |
| CIDE domains form functionally important higher-order assemblies for DNA fragmentation. | Choi JY, Qiao Q, Hong SH, Kim CM, Jeong JH, Kim YG, Jung YK, Wu H, Park HH | Proceedings of the National Academy of Sciences of the United States of America | 28652364 | Proc Natl Acad Sci U S A | 2017 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/28652364 |
| Molecular basis of caspase-1 polymerization and its inhibition by a new capping mechanism. | Lu A, Li Y, Schmidt FI, Yin Q, Chen S, Fu TM, Tong AB, Ploegh HL, Mao Y, Wu H | Nature structural & molecular biology | 27043298 | Nat Struct Mol Biol | 2016 May | https://www.ncbi.nlm.nih.gov/pubmed/27043298 |
| The Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex. | Mompeán M, Li W, Li J, Laage S, Siemer AB, Bozkurt G, Wu H, McDermott AE | Cell | 29681455 | Cell | 2018 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/29681455 |
| Cryo-EM structure of the activated NAIP2-NLRC4 inflammasome reveals nucleated polymerization. | Zhang L, Chen S, Ruan J, Wu J, Tong AB, Yin Q, Li Y, David L, Lu A, Wang WL, Marks C, Ouyang Q, Zhang X, Mao Y, Wu H | Science (New York, N.Y.) | 26449474 | Science | 2015 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/26449474 |
| The Structure and Dynamics of Higher-Order Assemblies: Amyloids, Signalosomes, and Granules. | Wu H, Fuxreiter M | Cell | 27203110 | Cell | 2016 May 19 | https://www.ncbi.nlm.nih.gov/pubmed/27203110 |
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| Higher-Order Clustering of the Transmembrane Anchor of DR5 Drives Signaling. | Pan L, Fu TM, Zhao W, Zhao L, Chen W, Qiu C, Liu W, Liu Z, Piai A, Fu Q, Chen S, Wu H, Chou JJ | Cell | 30827683 | Cell | 2019 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/30827683 |
| Publisher Correction: SERPINB1-mediated checkpoint of inflammatory caspase activation. | Choi YJ, Kim S, Choi Y, Nielsen TB, Yan J, Lu A, Ruan J, Lee HR, Wu H, Spellberg B, Jung JU | Nature immunology | 30846880 | Nat Immunol | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30846880 |
| Structural mechanism for NEK7-licensed activation of NLRP3 inflammasome. | Sharif H, Wang L, Wang WL, Magupalli VG, Andreeva L, Qiao Q, Hauenstein AV, Wu Z, Núñez G, Mao Y, Wu H | Nature | 31189953 | Nature | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31189953 |
| Monitoring gasdermin pore formation in vitro. | Xia S, Ruan J, Wu H | Methods in enzymology | 31455540 | Methods Enzymol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31455540 |
| DPP9 sequesters the C terminus of NLRP1 to repress inflammasome activation. | Hollingsworth LR, Sharif H, Griswold AR, Fontana P, Mintseris J, Dagbay KB, Paulo JA, Gygi SP, Bachovchin DA, Wu H | Nature | 33731932 | Nature | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33731932 |
| Disulfiram use is associated with lower risk of COVID-19: A retrospective cohort study. | Fillmore N, Bell S, Shen C, Nguyen V, La J, Dubreuil M, Strymish J, Brophy M, Mehta G, Wu H, Lieberman J, Do N, Sander C | PloS one | 34710137 | PLoS One | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34710137 |
| Structural transitions enable interleukin-18 maturation and signaling. | Dong Y, Bonin JP, Devant P, Liang Z, Sever AIM, Mintseris J, Aramini JM, Du G, Gygi SP, Kagan JC, Kay LE, Wu H | Immunity | 38733997 | Immunity | 2024 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/38733997 |
| ROS-dependent S-palmitoylation activates cleaved and intact gasdermin D. | Du G, Healy LB, David L, Walker C, El-Baba TJ, Lutomski CA, Goh B, Gu B, Pi X, Devant P, Fontana P, Dong Y, Ma X, Miao R, Balasubramanian A, Puthenveetil R, Banerjee A, Luo HR, Kagan JC, Oh SF, Robinson CV, Lieberman J, Wu H | Nature | 38599239 | Nature | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38599239 |
| Inflammation in acquired hydrocephalus: pathogenic mechanisms and therapeutic targets. | Karimy JK, Reeves BC, Damisah E, Duy PQ, Antwi P, David W, Wang K, Schiff SJ, Limbrick DD Jr, Alper SL, Warf BC, Nedergaard M, Simard JM, Kahle KT | Nature reviews. Neurology | 32152460 | Nat Rev Neurol | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32152460 |
| mirTarRnaSeq: An R/Bioconductor Statistical Package for miRNA-mRNA Target Identification and Interaction Analysis. | Movassagh M, Morton SU, Hehnly C, Smith J, Doan TT, Irizarry R, Broach JR, Schiff SJ, Bailey JA, Paulson JN | BMC genomics | 35698050 | BMC Genomics | 2022 Jun 13 | https://www.ncbi.nlm.nih.gov/pubmed/35698050 |
| Prevalence and correlates of MRSA and MSSA nasal carriage at a Ugandan regional referral hospital. | Bebell LM, Ayebare A, Boum Y 2nd, Siedner MJ, Bazira J, Schiff SJ, Metlay JP, Bangsberg DR, Ttendo S, Firth PG | The Journal of antimicrobial chemotherapy | 27999030 | J Antimicrob Chemother | 2017 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/27999030 |
| CLIF-Net: Intersection-guided Cross-view Fusion Network for Infection Detection from Cranial Ultrasound. | Yu M, Peterson MR, Burgoine K, Harbaugh T, Olupot-Olupot P, Gladstone M, Hagmann C, Cowan FM, Weeks A, Morton SU, Mulondo R, Mbabazi-Kabachelor E, Schiff SJ, Monga V | medRxiv : the preprint server for health sciences | 40778164 | medRxiv | 2025 Jul 22 | https://www.ncbi.nlm.nih.gov/pubmed/40778164 |
| Neonatal Paenibacilliosis: Paenibacillus Infection as a Novel Cause of Sepsis in Term Neonates With High Risk of Sequelae in Uganda. | Ericson JE, Burgoine K, Kumbakumba E, Ochora M, Hehnly C, Bajunirwe F, Bazira J, Fronterre C, Hagmann C, Kulkarni AV, Kumar MS, Magombe J, Mbabazi-Kabachelor E, Morton SU, Movassagh M, Mugamba J, Mulondo R, Natukwatsa D, Kaaya BN, Olupot-Olupot P, Onen J, Sheldon K, Smith J, Ssentongo P, Ssenyonga P, Warf B, Wegoye E, Zhang L, Kiwanuka J, Paulson JN, Broach JR, Schiff SJ | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 37279589 | Clin Infect Dis | 2023 Sep 11 | https://www.ncbi.nlm.nih.gov/pubmed/37279589 |
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| Cytomegalovirus infections in infants in Uganda: Newborn-mother pairs, neonates with sepsis, and infants with hydrocephalus. | Hehnly C, Ssentongo P, Bebell LM, Burgoine K, Bazira J, Fronterre C, Kumbakumba E, Mulondo R, Mbabazi-Kabachelor E, Morton SU, Ngonzi J, Ochora M, Olupot-Olupot P, Mugamba J, Onen J, Roberts DJ, Sheldon K, Sinnar SA, Smith J, Ssenyonga P, Kiwanuka J, Paulson JN, Meier FA, Ericson JE, Broach JR, Schiff SJ | International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases | 35150915 | Int J Infect Dis | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35150915 |
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| Type IV Pili Are a Critical Virulence Factor in Clinical Isolates of Paenibacillus thiaminolyticus. | Hehnly C, Shi A, Ssentongo P, Zhang L, Isaacs A, Morton SU, Streck N, Erdmann-Gilmore P, Tolstoy I, Townsend RR, Limbrick DD, Paulson JN, Ericson JE, Galperin MY, Schiff SJ, Broach JR | mBio | 36374038 | mBio | 2022 Dec 20 | https://www.ncbi.nlm.nih.gov/pubmed/36374038 |
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| Global, regional and national epidemiology and prevalence of child stunting, wasting and underweight in low- and middle-income countries, 2006-2018. | Ssentongo P, Ssentongo AE, Ba DM, Ericson JE, Na M, Gao X, Fronterre C, Chinchilli VM, Schiff SJ | Scientific reports | 33664313 | Sci Rep | 2021 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/33664313 |
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| Complete Genome Sequences of the Human Pathogen Paenibacillus thiaminolyticus Mbale and Type Strain P. thiaminolyticus NRRL B-4156. | Hehnly C, Zhang L, Paulson JN, Almeida M, von Bredow B, Wijetunge DSS, Galperin MY, Sheldon K, Schiff SJ, Broach JR | Microbiology resource announcements | 32273361 | Microbiol Resour Announc | 2020 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/32273361 |
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| CLIF-Net: Intersection-Guided Cross-View Fusion Network for Infection Detection From Cranial Ultrasound. | Yu M, Peterson MR, Burgoine K, Harbaugh T, Olupot-Olupot P, Gladstone M, Hagmann C, Cowan FM, Weeks A, Morton SU, Mulondo R, Mbabazi-Kabachelor E, Schiff SJ, Monga V | IEEE transactions on medical imaging | 40372847 | IEEE Trans Med Imaging | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40372847 |
| Separating Putative Pathogens from Background Contamination with Principal Orthogonal Decomposition: Evidence for Leptospira in the Ugandan Neonatal Septisome. | Schiff SJ, Kiwanuka J, Riggio G, Nguyen L, Mu K, Sproul E, Bazira J, Mwanga-Amumpaire J, Tumusiime D, Nyesigire E, Lwanga N, Bogale KT, Kapur V, Broach JR, Morton SU, Warf BC, Poss M | Frontiers in medicine | 27379237 | Front Med (Lausanne) | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27379237 |
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| Transcriptional Profiling of C. elegans Adult Cells and Tissues with Age. | Kaletsky R, Murphy CT | Methods in molecular biology (Clifton, N.J.) | 32410035 | Methods Mol Biol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32410035 |
| Protocol for transgenerational learned pathogen avoidance behavior assays in Caenorhabditis elegans. | Moore RS, Kaletsky R, Murphy CT | STAR protocols | 33748786 | STAR Protoc | 2021 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/33748786 |
| Caenorhabditis elegans sperm carry a histone-based epigenetic memory of both spermatogenesis and oogenesis. | Tabuchi TM, Rechtsteiner A, Jeffers TE, Egelhofer TA, Murphy CT, Strome S | Nature communications | 30333496 | Nat Commun | 2018 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/30333496 |
| Biological sex matters in brain aging. | Dubal DB, Murphy CT, Suh Y, Benayoun BA | Neuron | 39788086 | Neuron | 2025 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/39788086 |
| The usual suspects, dopamine and alpha-synuclein, conspire to cause neurodegeneration. | Mor DE, Daniels MJ, Ischiropoulos H | Movement disorders : official journal of the Movement Disorder Society | 30633814 | Mov Disord | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30633814 |
| Piwi/PRG-1 Argonaute and TGF-β Mediate Transgenerational Learned Pathogenic Avoidance. | Moore RS, Kaletsky R, Murphy CT | Cell | 31178117 | Cell | 2019 Jun 13 | https://www.ncbi.nlm.nih.gov/pubmed/31178117 |
| An integrative tissue-network approach to identify and test human disease genes. | Yao V, Kaletsky R, Keyes W, Mor DE, Wong AK, Sohrabi S, Murphy CT, Troyanskaya OG | Nature biotechnology | 30346941 | Nat Biotechnol | 2018 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/30346941 |
| Regulation of reproduction and longevity by nutrient-sensing pathways. | Templeman NM, Murphy CT | The Journal of cell biology | 29074705 | J Cell Biol | 2018 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/29074705 |
| Cell-Specific Transcriptional Profiling of Ciliated Sensory Neurons Reveals Regulators of Behavior and Extracellular Vesicle Biogenesis. | Wang J, Kaletsky R, Silva M, Williams A, Haas LA, Androwski RJ, Landis JN, Patrick C, Rashid A, Santiago-Martinez D, Gravato-Nobre M, Hodgkin J, Hall DH, Murphy CT, Barr MM | Current biology : CB | 26687621 | Curr Biol | 2015 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/26687621 |
| Novel elasticity measurements reveal C. elegans cuticle stiffens with age and in a long-lived mutant. | Rahimi M, Sohrabi S, Murphy CT | Biophysical journal | 35065051 | Biophys J | 2022 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/35065051 |
| High-throughput behavioral screen in C. elegans reveals Parkinson's disease drug candidates. | Sohrabi S, Mor DE, Kaletsky R, Keyes W, Murphy CT | Communications biology | 33589689 | Commun Biol | 2021 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/33589689 |
| Mitochondrial hyperactivity as a potential therapeutic target in Parkinson's disease. | Mor DE, Murphy CT | Translational medicine of aging | 33178902 | Transl Med Aging | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33178902 |
| The role of the Cer1 transposon in horizontal transfer of transgenerational memory. | Moore RS, Kaletsky R, Lesnik C, Cota V, Blackman E, Parsons LR, Gitai Z, Murphy CT | Cell | 34363756 | Cell | 2021 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/34363756 |
| A natural bacterial pathogen of C. elegans uses a small RNA to induce transgenerational inheritance of learned avoidance. | Sengupta T, St Ange J, Kaletsky R, Moore RS, Seto RJ, Marogi J, Myhrvold C, Gitai Z, Murphy CT | PLoS genetics | 38547071 | PLoS Genet | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38547071 |
| C. elegans cognitive decline with age: more than just wiggling forward and backward. | Sengupta T, Murphy CT | Genes & development | 40645666 | Genes Dev | 2025 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/40645666 |
| Adult single-nucleus neuronal transcriptomes of insulin signaling mutants reveal regulators of behavior and learning. | St Ange J, Weng Y, Kaletsky R, Stevenson ME, Moore RS, Zhou S, Murphy CT | Cell genomics | 39637862 | Cell Genom | 2024 Dec 11 | https://www.ncbi.nlm.nih.gov/pubmed/39637862 |
| Strategies for studying sex differences in brain aging. | Ansere VA, Kim SS, Marino F, Morillo K, Dubal DB, Murphy CT, Suh Y, Benayoun BA | Trends in genetics : TIG | 40037936 | Trends Genet | 2025 Aug | https://www.ncbi.nlm.nih.gov/pubmed/40037936 |
| A natural bacterial pathogen of C. elegans uses a small RNA to induce transgenerational inheritance of learned avoidance. | Sengupta T, St Ange J, Moore R, Kaletsky R, Marogi J, Myhrvold C, Gitai Z, Murphy CT | bioRxiv : the preprint server for biology | 37503135 | bioRxiv | 2023 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/37503135 |
| Pseudomonas fluorescens 15 small RNA Pfs1 mediates transgenerational epigenetic inheritance of pathogen avoidance in C. elegans through the Ephrin receptor VAB-1. | Seto R, Brown R, Kaletsky R, Parsons LR, Moore RS, Murphy CT | bioRxiv : the preprint server for biology | 38826453 | bioRxiv | 2024 May 23 | https://www.ncbi.nlm.nih.gov/pubmed/38826453 |
| Single cell analysis reveals multiple requirements for zinc in the mammalian cell cycle. | Lo MN, Damon LJ, Wei Tay J, Jia S, Palmer AE | eLife | 32014109 | Elife | 2020 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/32014109 |
| Remodeling of Zn(2+) homeostasis upon differentiation of mammary epithelial cells. | Han Y, Sanford L, Simpson DM, Dowell RD, Palmer AE | Metallomics : integrated biometal science | 31950952 | Metallomics | 2020 Mar 25 | https://www.ncbi.nlm.nih.gov/pubmed/31950952 |
| Directed Evolution of a Bright Variant of mCherry: Suppression of Nonradiative Decay by Fluorescence Lifetime Selections. | Mukherjee S, Manna P, Hung ST, Vietmeyer F, Friis P, Palmer AE, Jimenez R | The journal of physical chemistry. B | 35709514 | J Phys Chem B | 2022 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/35709514 |
| Zn(2+) influx activates ERK and Akt signaling pathways. | Anson KJ, Corbet GA, Palmer AE | Proceedings of the National Academy of Sciences of the United States of America | 33712543 | Proc Natl Acad Sci U S A | 2021 Mar 16 | https://www.ncbi.nlm.nih.gov/pubmed/33712543 |
| Intracellular Zn(2+) transients modulate global gene expression in dissociated rat hippocampal neurons. | Sanford L, Carpenter MC, Palmer AE | Scientific reports | 31253848 | Sci Rep | 2019 Jun 28 | https://www.ncbi.nlm.nih.gov/pubmed/31253848 |
| Intramolecular Fluorescent Protein Association in a Class of Zinc FRET Sensors Leads to Increased Dynamic Range. | Slocum JD, Palmer AE, Jimenez R | The journal of physical chemistry. B | 30942588 | J Phys Chem B | 2019 Apr 11 | https://www.ncbi.nlm.nih.gov/pubmed/30942588 |
| Human cells experience a Zn(2+) pulse in early G1. | Rakshit A, Holtzen SE, Lo MN, Conway KA, Palmer AE | Cell reports | 37330912 | Cell Rep | 2023 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/37330912 |
| Droplet Microfluidic Flow Cytometer For Sorting On Transient Cellular Responses Of Genetically-Encoded Sensors. | Fiedler BL, Van Buskirk S, Carter KP, Qin Y, Carpenter MC, Palmer AE, Jimenez R | Analytical chemistry | 27959493 | Anal Chem | 2017 Jan 3 | https://www.ncbi.nlm.nih.gov/pubmed/27959493 |
| Systematic Comparison of Vesicular Targeting Signals Leads to the Development of Genetically Encoded Vesicular Fluorescent Zn(2+) and pH Sensors. | Pratt EPS, Anson KJ, Tapper JK, Simpson DM, Palmer AE | ACS sensors | 33305939 | ACS Sens | 2020 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/33305939 |
| Illuminating RNA Biology: Tools for Imaging RNA in Live Mammalian Cells. | Braselmann E, Rathbun C, Richards EM, Palmer AE | Cell chemical biology | 32640188 | Cell Chem Biol | 2020 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/32640188 |
| Discovery of a ZIP7 inhibitor from a Notch pathway screen. | Nolin E, Gans S, Llamas L, Bandyopadhyay S, Brittain SM, Bernasconi-Elias P, Carter KP, Loureiro JJ, Thomas JR, Schirle M, Yang Y, Guo N, Roma G, Schuierer S, Beibel M, Lindeman A, Sigoillot F, Chen A, Xie KX, Ho S, Reece-Hoyes J, Weihofen WA, Tyskiewicz K, Hoepfner D, McDonald RI, Guthrie N, Dogra A, Guo H, Shao J, Ding J, Canham SM, Boynton G, George EL, Kang ZB, Antczak C, Porter JA, Wallace O, Tallarico JA, Palmer AE, Jenkins JL, Jain RK, Bushell SM, Fryer CJ | Nature chemical biology | 30643281 | Nat Chem Biol | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30643281 |
| Erratum: Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter. | Manna P, Hung ST, Mukherjee S, Friis P, Simpson DM, Lo M, Palmer AE, Jimenez R | Integrative biology : quantitative biosciences from nano to macro | 31788687 | Integr Biol (Camb) | 2019 Dec 31 | https://www.ncbi.nlm.nih.gov/pubmed/31788687 |
| A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells. | Braselmann E, Wierzba AJ, Polaski JT, Chromiński M, Holmes ZE, Hung ST, Batan D, Wheeler JR, Parker R, Jimenez R, Gryko D, Batey RT, Palmer AE | Nature chemical biology | 30061719 | Nat Chem Biol | 2018 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30061719 |
| Protocol for measuring cell cycle Zn(2+) dynamics using a FRET-based biosensor. | Holtzen SE, Rakshit A, Palmer AE | STAR protocols | 38861382 | STAR Protoc | 2024 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/38861382 |
| The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins. | Rodriguez EA, Campbell RE, Lin JY, Lin MZ, Miyawaki A, Palmer AE, Shu X, Zhang J, Tsien RY | Trends in biochemical sciences | 27814948 | Trends Biochem Sci | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27814948 |
| Critical Comparison of FRET-Sensor Functionality in the Cytosol and Endoplasmic Reticulum and Implications for Quantification of Ions. | Carter KP, Carpenter MC, Fiedler B, Jimenez R, Palmer AE | Analytical chemistry | 28758723 | Anal Chem | 2017 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/28758723 |
| Single molecule microscopy to profile the effect of zinc status on transcription factor dynamics. | Damon LJ, Aaron J, Palmer AE | Scientific reports | 36273101 | Sci Rep | 2022 Oct 22 | https://www.ncbi.nlm.nih.gov/pubmed/36273101 |
| Native and engineered sensors for Ca(2+) and Zn(2+): lessons from calmodulin and MTF1. | Carpenter MC, Palmer AE | Essays in biochemistry | 28487400 | Essays Biochem | 2017 May 9 | https://www.ncbi.nlm.nih.gov/pubmed/28487400 |
| Techniques for measuring cellular zinc. | Carpenter MC, Lo MN, Palmer AE | Archives of biochemistry and biophysics | 27580940 | Arch Biochem Biophys | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27580940 |
| A Critical and Comparative Review of Fluorescent Tools for Live-Cell Imaging. | Specht EA, Braselmann E, Palmer AE | Annual review of physiology | 27860833 | Annu Rev Physiol | 2017 Feb 10 | https://www.ncbi.nlm.nih.gov/pubmed/27860833 |
| Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter. | Manna P, Hung ST, Mukherjee S, Friis P, Simpson DM, Lo MN, Palmer AE, Jimenez R | Integrative biology : quantitative biosciences from nano to macro | 30094420 | Integr Biol (Camb) | 2018 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/30094420 |
| Zinc transporters belonging to the Cation Diffusion Facilitator (CDF) family have complementary roles in transporting zinc out of the cytosol. | Choi S, Hu YM, Corkins ME, Palmer AE, Bird AJ | PLoS genetics | 29529046 | PLoS Genet | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29529046 |
| Superiority of SpiroZin2 Versus FluoZin-3 for monitoring vesicular Zn(2+) allows tracking of lysosomal Zn(2+) pools. | Han Y, Goldberg JM, Lippard SJ, Palmer AE | Scientific reports | 30302024 | Sci Rep | 2018 Oct 9 | https://www.ncbi.nlm.nih.gov/pubmed/30302024 |
| Dissociated Hippocampal Neurons Exhibit Distinct Zn(2+) Dynamics in a Stimulation-Method-Dependent Manner. | Sanford L, Palmer AE | ACS chemical neuroscience | 32013397 | ACS Chem Neurosci | 2020 Feb 19 | https://www.ncbi.nlm.nih.gov/pubmed/32013397 |
| A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells. | Braselmann E, Palmer AE | Methods in enzymology | 32713529 | Methods Enzymol | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32713529 |
| Tools and techniques for illuminating the cell biology of zinc. | Pratt EPS, Damon LJ, Anson KJ, Palmer AE | Biochimica et biophysica acta. Molecular cell research | 32980354 | Biochim Biophys Acta Mol Cell Res | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32980354 |
| Engineering of a Brighter Variant of the FusionRed Fluorescent Protein Using Lifetime Flow Cytometry and Structure-Guided Mutations. | Mukherjee S, Hung ST, Douglas N, Manna P, Thomas C, Ekrem A, Palmer AE, Jimenez R | Biochemistry | 32914619 | Biochemistry | 2020 Oct 6 | https://www.ncbi.nlm.nih.gov/pubmed/32914619 |
| Characterization of Global Gene Expression, Regulation of Metal Ions, and Infection Outcomes in Immune-Competent 129S6 Mouse Macrophages. | Janiszewski LN, Minson M, Allen MA, Dowell RD, Palmer AE | Infection and immunity | 34370511 | Infect Immun | 2021 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/34370511 |
| Nucleoside reverse transcriptase inhibitors possess intrinsic anti-inflammatory activity. | Fowler BJ, Gelfand BD, Kim Y, Kerur N, Tarallo V, Hirano Y, Amarnath S, Fowler DH, Radwan M, Young MT, Pittman K, Kubes P, Agarwal HK, Parang K, Hinton DR, Bastos-Carvalho A, Li S, Yasuma T, Mizutani T, Yasuma R, Wright C, Ambati J | Science (New York, N.Y.) | 25414314 | Science | 2014 Nov 21 | https://www.ncbi.nlm.nih.gov/pubmed/25414314 |
| Powerful anti-tumor and anti-angiogenic activity of a new anti-vascular endothelial growth factor receptor 1 peptide in colorectal cancer models. | Cicatiello V, Apicella I, Tudisco L, Tarallo V, Formisano L, Sandomenico A, Kim Y, Bastos-Carvalho A, Orlandi A, Ambati J, Ruvo M, Bianco R, De Falco S | Oncotarget | 25868854 | Oncotarget | 2015 Apr 30 | https://www.ncbi.nlm.nih.gov/pubmed/25868854 |
| Human IgG1 antibodies suppress angiogenesis in a target-independent manner. | Bogdanovich S, Kim Y, Mizutani T, Yasuma R, Tudisco L, Cicatiello V, Bastos-Carvalho A, Kerur N, Hirano Y, Baffi JZ, Tarallo V, Li S, Yasuma T, Arpitha P, Fowler BJ, Wright CB, Apicella I, Greco A, Brunetti A, Ruvo M, Sandomenico A, Nozaki M, Ijima R, Kaneko H, Ogura Y, Terasaki H, Ambati BK, Leusen JH, Langdon WY, Clark MR, Armour KL, Bruhns P, Verbeek JS, Gelfand BD, De Falco S, Ambati J | Signal transduction and targeted therapy | 26918197 | Signal Transduct Target Ther | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26918197 |
| A Revised Hemodynamic Theory of Age-Related Macular Degeneration. | Gelfand BD, Ambati J | Trends in molecular medicine | 27423265 | Trends Mol Med | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/27423265 |
| L1 drives IFN in senescent cells and promotes age-associated inflammation. | De Cecco M, Ito T, Petrashen AP, Elias AE, Skvir NJ, Criscione SW, Caligiana A, Brocculi G, Adney EM, Boeke JD, Le O, Beauséjour C, Ambati J, Ambati K, Simon M, Seluanov A, Gorbunova V, Slagboom PE, Helfand SL, Neretti N, Sedivy JM | Nature | 30728521 | Nature | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30728521 |
| IL-18 is not therapeutic for neovascular age-related macular degeneration. | Hirano Y, Yasuma T, Mizutani T, Fowler BJ, Tarallo V, Yasuma R, Kim Y, Bastos-Carvalho A, Kerur N, Gelfand BD, Bogdanovich S, He S, Zhang X, Nozaki M, Ijima R, Kaneko H, Ogura Y, Terasaki H, Nagai H, Haro I, Núñez G, Ambati BK, Hinton DR, Ambati J | Nature medicine | 25473914 | Nat Med | 2014 Dec | https://www.ncbi.nlm.nih.gov/pubmed/25473914 |
| Nucleoside Reverse Transcriptase Inhibitors Suppress Laser-Induced Choroidal Neovascularization in Mice. | Mizutani T, Fowler BJ, Kim Y, Yasuma R, Krueger LA, Gelfand BD, Ambati J | Investigative ophthalmology & visual science | 26529046 | Invest Ophthalmol Vis Sci | 2015 Nov | https://www.ncbi.nlm.nih.gov/pubmed/26529046 |
| Voluntary Exercise Suppresses Choroidal Neovascularization in Mice. | Makin RD, Argyle D, Hirahara S, Nagasaka Y, Zhang M, Yan Z, Kerur N, Ambati J, Gelfand BD | Investigative ophthalmology & visual science | 32460310 | Invest Ophthalmol Vis Sci | 2020 May 11 | https://www.ncbi.nlm.nih.gov/pubmed/32460310 |
| RF/6A Chorioretinal Cells Do Not Display Key Endothelial Phenotypes. | Makin RD, Apicella I, Nagasaka Y, Kaneko H, Turner SD, Kerur N, Ambati J, Gelfand BD | Investigative ophthalmology & visual science | 30508043 | Invest Ophthalmol Vis Sci | 2018 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/30508043 |
| Zidovudine ameliorates pathology in the mouse model of Duchenne muscular dystrophy via P2RX7 purinoceptor antagonism. | Al-Khalidi R, Panicucci C, Cox P, Chira N, Róg J, Young CNJ, McGeehan RE, Ambati K, Ambati J, Zabłocki K, Gazzerro E, Arkle S, Bruno C, Górecki DC | Acta neuropathologica communications | 29642926 | Acta Neuropathol Commun | 2018 Apr 11 | https://www.ncbi.nlm.nih.gov/pubmed/29642926 |
| cGAS drives noncanonical-inflammasome activation in age-related macular degeneration. | Kerur N, Fukuda S, Banerjee D, Kim Y, Fu D, Apicella I, Varshney A, Yasuma R, Fowler BJ, Baghdasaryan E, Marion KM, Huang X, Yasuma T, Hirano Y, Serbulea V, Ambati M, Ambati VL, Kajiwara Y, Ambati K, Hirahara S, Bastos-Carvalho A, Ogura Y, Terasaki H, Oshika T, Kim KB, Hinton DR, Leitinger N, Cambier JC, Buxbaum JD, Kenney MC, Jazwinski SM, Nagai H, Hara I, West AP, Fitzgerald KA, Sadda SR, Gelfand BD, Ambati J | Nature medicine | 29176737 | Nat Med | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29176737 |
| Dry Age-Related Macular Degeneration Pharmacology. | Wright CB, Ambati J | Handbook of experimental pharmacology | 27900609 | Handb Exp Pharmacol | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/27900609 |
| A non-canonical, interferon-independent signaling activity of cGAMP triggers DNA damage response signaling. | Banerjee D, Langberg K, Abbas S, Odermatt E, Yerramothu P, Volaric M, Reidenbach MA, Krentz KJ, Rubinstein CD, Brautigan DL, Abbas T, Gelfand BD, Ambati J, Kerur N | Nature communications | 34707113 | Nat Commun | 2021 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/34707113 |
| DDX17 is an essential mediator of sterile NLRC4 inflammasome activation by retrotransposon RNAs. | Wang SB, Narendran S, Hirahara S, Varshney A, Pereira F, Apicella I, Ambati M, Ambati VL, Yerramothu P, Ambati K, Nagasaka Y, Argyle D, Huang P, Baker KL, Marion KM, Gupta K, Liu B, Hinton DR, Canna SW, Sallam T, Sadda SR, Kerur N, Gelfand BD, Ambati J | Science immunology | 34860583 | Sci Immunol | 2021 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/34860583 |
| Intravenous immune globulin suppresses angiogenesis in mice and humans. | Yasuma R, Cicatiello V, Mizutani T, Tudisco L, Kim Y, Tarallo V, Bogdanovich S, Hirano Y, Kerur N, Li S, Yasuma T, Fowler BJ, Wright CB, Apicella I, Greco A, Brunetti A, Ambati BK, Helmers SB, Lundberg IE, Viklicky O, Leusen JH, Verbeek JS, Gelfand BD, Bastos-Carvalho A, De Falco S, Ambati J | Signal transduction and targeted therapy | 26925256 | Signal Transduct Target Ther | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26925256 |
| Iron Toxicity in the Retina Requires Alu RNA and the NLRP3 Inflammasome. | Gelfand BD, Wright CB, Kim Y, Yasuma T, Yasuma R, Li S, Fowler BJ, Bastos-Carvalho A, Kerur N, Uittenbogaard A, Han YS, Lou D, Kleinman ME, McDonald WH, Núñez G, Georgel P, Dunaief JL, Ambati J | Cell reports | 26074074 | Cell Rep | 2015 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/26074074 |
| Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration. | Fukuda S, Varshney A, Fowler BJ, Wang SB, Narendran S, Ambati K, Yasuma T, Magagnoli J, Leung H, Hirahara S, Nagasaka Y, Yasuma R, Apicella I, Pereira F, Makin RD, Magner E, Liu X, Sun J, Wang M, Baker K, Marion KM, Huang X, Baghdasaryan E, Ambati M, Ambati VL, Pandey A, Pandya L, Cummings T, Banerjee D, Huang P, Yerramothu P, Tolstonog GV, Held U, Erwin JA, Paquola ACM, Herdy JR, Ogura Y, Terasaki H, Oshika T, Darwish S, Singh RK, Mozaffari S, Bhattarai D, Kim KB, Hardin JW, Bennett CL, Hinton DR, Hanson TE, Röver C, Parang K, Kerur N, Liu J, Werner BC, Sutton SS, Sadda SR, Schumann GG, Gelfand BD, Gage FH, Ambati J | Proceedings of the National Academy of Sciences of the United States of America | 33526699 | Proc Natl Acad Sci U S A | 2021 Feb 9 | https://www.ncbi.nlm.nih.gov/pubmed/33526699 |
| Chronic Dicer1 deficiency promotes atrophic and neovascular outer retinal pathologies in mice. | Wright CB, Uehara H, Kim Y, Yasuma T, Yasuma R, Hirahara S, Makin RD, Apicella I, Pereira F, Nagasaka Y, Narendran S, Fukuda S, Albuquerque R, Fowler BJ, Bastos-Carvalho A, Georgel P, Hatada I, Chang B, Kerur N, Ambati BK, Ambati J, Gelfand BD | Proceedings of the National Academy of Sciences of the United States of America | 31964819 | Proc Natl Acad Sci U S A | 2020 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/31964819 |
| DICER1/Alu RNA dysmetabolism induces Caspase-8-mediated cell death in age-related macular degeneration. | Kim Y, Tarallo V, Kerur N, Yasuma T, Gelfand BD, Bastos-Carvalho A, Hirano Y, Yasuma R, Mizutani T, Fowler BJ, Li S, Kaneko H, Bogdanovich S, Ambati BK, Hinton DR, Hauswirth WW, Hakem R, Wright C, Ambati J | Proceedings of the National Academy of Sciences of the United States of America | 25349431 | Proc Natl Acad Sci U S A | 2014 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/25349431 |
| Photoswitchable fluorescent proteins: ten years of colorful chemistry and exciting applications. | Zhou XX, Lin MZ | Current opinion in chemical biology | 23876529 | Curr Opin Chem Biol | 2013 Aug | https://www.ncbi.nlm.nih.gov/pubmed/23876529 |
| Optical control of biological processes by light-switchable proteins. | Fan LZ, Lin MZ | Wiley interdisciplinary reviews. Developmental biology | 25858669 | Wiley Interdiscip Rev Dev Biol | 2015 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/25858669 |
| Quantitative Multiscale Cell Imaging in Controlled 3D Microenvironments. | Welf ES, Driscoll MK, Dean KM, Schäfer C, Chu J, Davidson MW, Lin MZ, Danuser G, Fiolka R | Developmental cell | 26906741 | Dev Cell | 2016 Feb 22 | https://www.ncbi.nlm.nih.gov/pubmed/26906741 |
| Genetically encoded indicators of neuronal activity. | Lin MZ, Schnitzer MJ | Nature neuroscience | 27571193 | Nat Neurosci | 2016 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/27571193 |
| Fluorescent indicators for simultaneous reporting of all four cell cycle phases. | Bajar BT, Lam AJ, Badiee RK, Oh YH, Chu J, Zhou XX, Kim N, Kim BB, Chung M, Yablonovitch AL, Cruz BF, Kulalert K, Tao JJ, Meyer T, Su XD, Lin MZ | Nature methods | 27798610 | Nat Methods | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27798610 |
| Structure-guided wavelength tuning in far-red fluorescent proteins. | Ng HL, Lin MZ | Current opinion in structural biology | 27468111 | Curr Opin Struct Biol | 2016 Aug | https://www.ncbi.nlm.nih.gov/pubmed/27468111 |
| An orange calcium-modulated bioluminescent indicator for non-invasive activity imaging. | Oh Y, Park Y, Cho JH, Wu H, Paulk NK, Liu LX, Kim N, Kay MA, Wu JC, Lin MZ | Nature chemical biology | 30936501 | Nat Chem Biol | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30936501 |
| A Single-Chain Photoswitchable CRISPR-Cas9 Architecture for Light-Inducible Gene Editing and Transcription. | Zhou XX, Zou X, Chung HK, Gao Y, Liu Y, Qi LS, Lin MZ | ACS chemical biology | 28938067 | ACS Chem Biol | 2018 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/28938067 |
| Optobiology: optical control of biological processes via protein engineering. | Kim B, Lin MZ | Biochemical Society transactions | 24059506 | Biochem Soc Trans | 2013 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24059506 |
| Investigating neuronal function with optically controllable proteins. | Zhou XX, Pan M, Lin MZ | Frontiers in molecular neuroscience | 26257603 | Front Mol Neurosci | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26257603 |
| Optical control of cell signaling by single-chain photoswitchable kinases. | Zhou XX, Fan LZ, Li P, Shen K, Lin MZ | Science (New York, N.Y.) | 28232577 | Science | 2017 Feb 24 | https://www.ncbi.nlm.nih.gov/pubmed/28232577 |
| Optical regulation of endogenous RhoA reveals selection of cellular responses by signal amplitude. | Ju J, Lee HN, Ning L, Ryu H, Zhou XX, Chun H, Lee YW, Lee-Richerson AI, Jeong C, Lin MZ, Seong J | Cell reports | 35830815 | Cell Rep | 2022 Jul 12 | https://www.ncbi.nlm.nih.gov/pubmed/35830815 |
| Fungal polyketide synthase product chain-length control by partnering thiohydrolase. | Zabala AO, Chooi YH, Choi MS, Lin HC, Tang Y | ACS chemical biology | 24845309 | ACS Chem Biol | 2014 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/24845309 |
| Short pathways to complexity generation: fungal peptidyl alkaloid multicyclic scaffolds from anthranilate building blocks. | Walsh CT, Haynes SW, Ames BD, Gao X, Tang Y | ACS chemical biology | 23659680 | ACS Chem Biol | 2013 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/23659680 |
| Identification and characterization of the echinocandin B biosynthetic gene cluster from Emericella rugulosa NRRL 11440. | Cacho RA, Jiang W, Chooi YH, Walsh CT, Tang Y | Journal of the American Chemical Society | 22998630 | J Am Chem Soc | 2012 Oct 10 | https://www.ncbi.nlm.nih.gov/pubmed/22998630 |
| Coordinated and Iterative Enzyme Catalysis in Fungal Polyketide Biosynthesis. | Hang L, Liu N, Tang Y | ACS catalysis | 28529817 | ACS Catal | 2016 Sep 2 | https://www.ncbi.nlm.nih.gov/pubmed/28529817 |
| Biosynthesis of Strained Piperazine Alkaloids: Uncovering the Concise Pathway of Herquline A. | Yu X, Liu F, Zou Y, Tang MC, Hang L, Houk KN, Tang Y | Journal of the American Chemical Society | 27690412 | J Am Chem Soc | 2016 Oct 19 | https://www.ncbi.nlm.nih.gov/pubmed/27690412 |
| Involvement of Lipocalin-like CghA in Decalin-Forming Stereoselective Intramolecular [4+2] Cycloaddition. | Sato M, Yagishita F, Mino T, Uchiyama N, Patel A, Chooi YH, Goda Y, Xu W, Noguchi H, Yamamoto T, Hotta K, Houk KN, Tang Y, Watanabe K | Chembiochem : a European journal of chemical biology | 26360642 | Chembiochem | 2015 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/26360642 |
| Identification and Heterologous Production of a Benzoyl-Primed Tricarboxylic Acid Polyketide Intermediate from the Zaragozic Acid A Biosynthetic Pathway. | Liu N, Hung YS, Gao SS, Hang L, Zou Y, Chooi YH, Tang Y | Organic letters | 28605916 | Org Lett | 2017 Jul 7 | https://www.ncbi.nlm.nih.gov/pubmed/28605916 |
| Generation of complexity in fungal terpene biosynthesis: discovery of a multifunctional cytochrome P450 in the fumagillin pathway. | Lin HC, Tsunematsu Y, Dhingra S, Xu W, Fukutomi M, Chooi YH, Cane DE, Calvo AM, Watanabe K, Tang Y | Journal of the American Chemical Society | 24568283 | J Am Chem Soc | 2014 Mar 19 | https://www.ncbi.nlm.nih.gov/pubmed/24568283 |
| Biosynthesis of the α-nitro-containing cyclic tripeptide psychrophilin. | Zhao M, Lin HC, Tang Y | The Journal of antibiotics | 26956794 | J Antibiot (Tokyo) | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/26956794 |
| P450-Mediated Coupling of Indole Fragments To Forge Communesin and Unnatural Isomers. | Lin HC, McMahon TC, Patel A, Corsello M, Simon A, Xu W, Zhao M, Houk KN, Garg NK, Tang Y | Journal of the American Chemical Society | 26963294 | J Am Chem Soc | 2016 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/26963294 |
| Thioesterase-Catalyzed Aminoacylation and Thiolation of Polyketides in Fungi. | Tang MC, Fischer CR, Chari JV, Tan D, Suresh S, Chu A, Miranda M, Smith J, Zhang Z, Garg NK, St Onge RP, Tang Y | Journal of the American Chemical Society | 31051070 | J Am Chem Soc | 2019 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/31051070 |
| Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action. | Yan Y, Liu Q, Zang X, Yuan S, Bat-Erdene U, Nguyen C, Gan J, Zhou J, Jacobsen SE, Tang Y | Nature | 29995859 | Nature | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29995859 |
| Enzymatic one-step ring contraction for quinolone biosynthesis. | Kishimoto S, Hara K, Hashimoto H, Hirayama Y, Champagne PA, Houk KN, Tang Y, Watanabe K | Nature communications | 30026518 | Nat Commun | 2018 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/30026518 |
| Collaborative Biosynthesis of Maleimide- and Succinimide-Containing Natural Products by Fungal Polyketide Megasynthases. | Sato M, Dander JE, Sato C, Hung YS, Gao SS, Tang MC, Hang L, Winter JM, Garg NK, Watanabe K, Tang Y | Journal of the American Chemical Society | 28365998 | J Am Chem Soc | 2017 Apr 19 | https://www.ncbi.nlm.nih.gov/pubmed/28365998 |
| SAM-dependent enzyme-catalysed pericyclic reactions in natural product biosynthesis. | Ohashi M, Liu F, Hai Y, Chen M, Tang MC, Yang Z, Sato M, Watanabe K, Houk KN, Tang Y | Nature | 28902839 | Nature | 2017 Sep 28 | https://www.ncbi.nlm.nih.gov/pubmed/28902839 |
| Oxidative trans to cis Isomerization of Olefins in Polyketide Biosynthesis. | Yamamoto T, Tsunematsu Y, Hara K, Suzuki T, Kishimoto S, Kawagishi H, Noguchi H, Hashimoto H, Tang Y, Hotta K, Watanabe K | Angewandte Chemie (International ed. in English) | 27072782 | Angew Chem Int Ed Engl | 2016 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/27072782 |
| Structural basis of nonribosomal peptide macrocyclization in fungi. | Zhang J, Liu N, Cacho RA, Gong Z, Liu Z, Qin W, Tang C, Tang Y, Zhou J | Nature chemical biology | 27748753 | Nat Chem Biol | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27748753 |
| Identification and characterization of the chaetoviridin and chaetomugilin gene cluster in Chaetomium globosum reveal dual functions of an iterative highly-reducing polyketide synthase. | Winter JM, Sato M, Sugimoto S, Chiou G, Garg NK, Tang Y, Watanabe K | Journal of the American Chemical Society | 23072467 | J Am Chem Soc | 2012 Oct 31 | https://www.ncbi.nlm.nih.gov/pubmed/23072467 |
| Genome mining of a prenylated and immunosuppressive polyketide from pathogenic fungi. | Chooi YH, Fang J, Liu H, Filler SG, Wang P, Tang Y | Organic letters | 23368997 | Org Lett | 2013 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/23368997 |
| A cytochrome P450 serves as an unexpected terpene cyclase during fungal meroterpenoid biosynthesis. | Chooi YH, Hong YJ, Cacho RA, Tantillo DJ, Tang Y | Journal of the American Chemical Society | 24161266 | J Am Chem Soc | 2013 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/24161266 |
| EcdGHK are three tailoring iron oxygenases for amino acid building blocks of the echinocandin scaffold. | Jiang W, Cacho RA, Chiou G, Garg NK, Tang Y, Walsh CT | Journal of the American Chemical Society | 23451921 | J Am Chem Soc | 2013 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/23451921 |
| Expanding the structural diversity of polyketides by exploring the cofactor tolerance of an inline methyltransferase domain. | Winter JM, Chiou G, Bothwell IR, Xu W, Garg NK, Luo M, Tang Y | Organic letters | 23837609 | Org Lett | 2013 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/23837609 |
| Comparison of 10,11-Dehydrocurvularin Polyketide Synthases from Alternaria cinerariae and Aspergillus terreus Highlights Key Structural Motifs. | Cochrane RV, Gao Z, Lambkin GR, Xu W, Winter JM, Marcus SL, Tang Y, Vederas JC | Chembiochem : a European journal of chemical biology | 26493380 | Chembiochem | 2015 Nov | https://www.ncbi.nlm.nih.gov/pubmed/26493380 |
| Saccharomyces cerevisiae as a tool for mining, studying and engineering fungal polyketide synthases. | Bond C, Tang Y, Li L | Fungal genetics and biology : FG & B | 26850128 | Fungal Genet Biol | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/26850128 |
| Phenalenone Polyketide Cyclization Catalyzed by Fungal Polyketide Synthase and Flavin-Dependent Monooxygenase. | Gao SS, Duan A, Xu W, Yu P, Hang L, Houk KN, Tang Y | Journal of the American Chemical Society | 26978228 | J Am Chem Soc | 2016 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/26978228 |
| Combinatorial Generation of Chemical Diversity by Redox Enzymes in Chaetoviridin Biosynthesis. | Sato M, Winter JM, Kishimoto S, Noguchi H, Tang Y, Watanabe K | Organic letters | 26959241 | Org Lett | 2016 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/26959241 |
| Genome Mining and Assembly-Line Biosynthesis of the UCS1025A Pyrrolizidinone Family of Fungal Alkaloids. | Li L, Tang MC, Tang S, Gao S, Soliman S, Hang L, Xu W, Ye T, Watanabe K, Tang Y | Journal of the American Chemical Society | 29373009 | J Am Chem Soc | 2018 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/29373009 |
| Reversible Product Release and Recapture by a Fungal Polyketide Synthase Using a Carnitine Acyltransferase Domain. | Hang L, Tang MC, Harvey CJB, Page CG, Li J, Hung YS, Liu N, Hillenmeyer ME, Tang Y | Angewandte Chemie (International ed. in English) | 28679030 | Angew Chem Int Ed Engl | 2017 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/28679030 |
| Mechanism of the P450-Catalyzed Oxidative Cyclization in the Biosynthesis of Griseofulvin. | Grandner JM, Cacho RA, Tang Y, Houk KN | ACS catalysis | 28503354 | ACS Catal | 2016 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/28503354 |
| Enzyme-Catalyzed Intramolecular Enantioselective Hydroalkoxylation. | Gao SS, Garcia-Borràs M, Barber JS, Hai Y, Duan A, Garg NK, Houk KN, Tang Y | Journal of the American Chemical Society | 28240554 | J Am Chem Soc | 2017 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/28240554 |
| Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi. | Cacho RA, Tang Y, Chooi YH | Frontiers in microbiology | 25642215 | Front Microbiol | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25642215 |
| Elucidation of pseurotin biosynthetic pathway points to trans-acting C-methyltransferase: generation of chemical diversity. | Tsunematsu Y, Fukutomi M, Saruwatari T, Noguchi H, Hotta K, Tang Y, Watanabe K | Angewandte Chemie (International ed. in English) | 24939566 | Angew Chem Int Ed Engl | 2014 Aug 4 | https://www.ncbi.nlm.nih.gov/pubmed/24939566 |
| Epigenetic genome mining of an endophytic fungus leads to the pleiotropic biosynthesis of natural products. | Mao XM, Xu W, Li D, Yin WB, Chooi YH, Li YQ, Tang Y, Hu Y | Angewandte Chemie (International ed. in English) | 26013262 | Angew Chem Int Ed Engl | 2015 Jun 22 | https://www.ncbi.nlm.nih.gov/pubmed/26013262 |
| Complexity generation in fungal polyketide biosynthesis: a spirocycle-forming P450 in the concise pathway to the antifungal drug griseofulvin. | Cacho RA, Chooi YH, Zhou H, Tang Y | ACS chemical biology | 23978092 | ACS Chem Biol | 2013 Oct 18 | https://www.ncbi.nlm.nih.gov/pubmed/23978092 |
| The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus. | Dhingra S, Lind AL, Lin HC, Tang Y, Rokas A, Calvo AM | PloS one | 24116213 | PLoS One | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24116213 |
| Classification of Single Particles from Human Cell Extract Reveals Distinct Structures. | Verbeke EJ, Mallam AL, Drew K, Marcotte EM, Taylor DW | Cell reports | 29972786 | Cell Rep | 2018 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/29972786 |
| Systems-wide Studies Uncover Commander, a Multiprotein Complex Essential to Human Development. | Mallam AL, Marcotte EM | Cell systems | 28544880 | Cell Syst | 2017 May 24 | https://www.ncbi.nlm.nih.gov/pubmed/28544880 |
| Panorama of ancient metazoan macromolecular complexes. | Wan C, Borgeson B, Phanse S, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A | Nature | 26344197 | Nature | 2015 Sep 17 | https://www.ncbi.nlm.nih.gov/pubmed/26344197 |
| The Many Nuanced Evolutionary Consequences of Duplicated Genes. | Teufel AI, Johnson MM, Laurent JM, Kachroo AH, Marcotte EM, Wilke CO | Molecular biology and evolution | 30428072 | Mol Biol Evol | 2019 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/30428072 |
| A liquid-like organelle at the root of motile ciliopathy. | Huizar RL, Lee C, Boulgakov AA, Horani A, Tu F, Marcotte EM, Brody SL, Wallingford JB | eLife | 30561330 | Elife | 2018 Dec 18 | https://www.ncbi.nlm.nih.gov/pubmed/30561330 |
| A highly parallel strategy for storage of digital information in living cells. | Akhmetov A, Ellington AD, Marcotte EM | BMC biotechnology | 30333005 | BMC Biotechnol | 2018 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/30333005 |
| Long-term neural and physiological phenotyping of a single human. | Poldrack RA, Laumann TO, Koyejo O, Gregory B, Hover A, Chen MY, Gorgolewski KJ, Luci J, Joo SJ, Boyd RL, Hunicke-Smith S, Simpson ZB, Caven T, Sochat V, Shine JM, Gordon E, Snyder AZ, Adeyemo B, Petersen SE, Glahn DC, Reese Mckay D, Curran JE, Göring HH, Carless MA, Blangero J, Dougherty R, Leemans A, Handwerker DA, Frick L, Marcotte EM, Mumford JA | Nature communications | 26648521 | Nat Commun | 2015 Dec 9 | https://www.ncbi.nlm.nih.gov/pubmed/26648521 |
| Solution-phase and solid-phase sequential, selective modification of side chains in KDYWEC and KDYWE as models for usage in single-molecule protein sequencing. | Hernandez ET, Swaminathan J, Marcotte EM, Anslyn EV | New journal of chemistry = Nouveau journal de chimie | 28983186 | New J Chem | 2017 Jan 21 | https://www.ncbi.nlm.nih.gov/pubmed/28983186 |
| Systematic bacterialization of yeast genes identifies a near-universally swappable pathway. | Kachroo AH, Laurent JM, Akhmetov A, Szilagyi-Jones M, McWhite CD, Zhao A, Marcotte EM | eLife | 28661399 | Elife | 2017 Jun 29 | https://www.ncbi.nlm.nih.gov/pubmed/28661399 |
| Proteomic identification of monoclonal antibodies from serum. | Boutz DR, Horton AP, Wine Y, Lavinder JJ, Georgiou G, Marcotte EM | Analytical chemistry | 24684310 | Anal Chem | 2014 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/24684310 |
| The proteomic response to mutants of the Escherichia coli RNA degradosome. | Zhou L, Zhang AB, Wang R, Marcotte EM, Vogel C | Molecular bioSystems | 23403814 | Mol Biosyst | 2013 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/23403814 |
| Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. | Vogel C, Marcotte EM | Nature reviews. Genetics | 22411467 | Nat Rev Genet | 2012 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/22411467 |
| Statistical approach to protein quantification. | Gerster S, Kwon T, Ludwig C, Matondo M, Vogel C, Marcotte EM, Aebersold R, Bühlmann P | Molecular & cellular proteomics : MCP | 24255132 | Mol Cell Proteomics | 2014 Feb | https://www.ncbi.nlm.nih.gov/pubmed/24255132 |
| Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection. | Kuboniwa M, Houser JR, Hendrickson EL, Wang Q, Alghamdi SA, Sakanaka A, Miller DP, Hutcherson JA, Wang T, Beck DAC, Whiteley M, Amano A, Wang H, Marcotte EM, Hackett M, Lamont RJ | Nature microbiology | 28924191 | Nat Microbiol | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/28924191 |
| An efficient methodology to introduce o-(aminomethyl)phenyl-boronic acids into peptides: alkylation of secondary amines. | Hernandez ET, Kolesnichenko IV, Reuther JF, Anslyn EV | New journal of chemistry = Nouveau journal de chimie | 28649175 | New J Chem | 2017 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/28649175 |
| Protein localization screening in vivo reveals novel regulators of multiciliated cell development and function. | Tu F, Sedzinski J, Ma Y, Marcotte EM, Wallingford JB | Journal of cell science | 29180514 | J Cell Sci | 2018 Jan 29 | https://www.ncbi.nlm.nih.gov/pubmed/29180514 |
| The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery. | Toriyama M, Lee C, Taylor SP, Duran I, Cohn DH, Bruel AL, Tabler JM, Drew K, Kelly MR, Kim S, Park TJ, Braun DA, Pierquin G, Biver A, Wagner K, Malfroot A, Panigrahi I, Franco B, Al-Lami HA, Yeung Y, Choi YJ, University of Washington Center for Mendelian Genomics, Duffourd Y, Faivre L, Rivière JB, Chen J, Liu KJ, Marcotte EM, Hildebrandt F, Thauvin-Robinet C, Krakow D, Jackson PK, Wallingford JB | Nature genetics | 27158779 | Nat Genet | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27158779 |
| Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation. | Houser JR, Barnhart C, Boutz DR, Carroll SM, Dasgupta A, Michener JK, Needham BD, Papoulas O, Sridhara V, Sydykova DK, Marx CJ, Trent MS, Barrick JE, Marcotte EM, Wilke CO | PLoS computational biology | 26275208 | PLoS Comput Biol | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26275208 |
| Towards Consensus Gene Ages. | Liebeskind BJ, McWhite CD, Marcotte EM | Genome biology and evolution | 27259914 | Genome Biol Evol | 2016 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/27259914 |
| Photography Coupled with Self-Propagating Chemical Cascades: Differentiation and Quantitation of G- and V-Nerve Agent Mimics via Chromaticity. | Sun X, Boulgakov AA, Smith LN, Metola P, Marcotte EM, Anslyn EV | ACS central science | 30062113 | ACS Cent Sci | 2018 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/30062113 |
| The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot. | Sardana R, Liu X, Granneman S, Zhu J, Gill M, Papoulas O, Marcotte EM, Tollervey D, Correll CC, Johnson AW | PLoS biology | 25710520 | PLoS Biol | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25710520 |
| Modes of interaction between individuals dominate the topologies of real world networks. | Lee I, Kim E, Marcotte EM | PloS one | 25793969 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25793969 |
| Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness. | Hammerling MJ, Ellefson JW, Boutz DR, Marcotte EM, Ellington AD, Barrick JE | Nature chemical biology | 24487692 | Nat Chem Biol | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24487692 |
| 2,2'-Bipyridine and hydrazide containing peptides for cyclization and complex quaternary structural control. | Hernandez ET, Rogelio Escamilla P, Kwon SY, Partridge J, McVeigh M, Rivera S, Reuther JF, Anslyn EV | New journal of chemistry = Nouveau journal de chimie | 30386131 | New J Chem | 2018 Jun 7 | https://www.ncbi.nlm.nih.gov/pubmed/30386131 |
| Diversity of human tRNA genes from the 1000-genomes project. | Parisien M, Wang X, Pan T | RNA biology | 24448271 | RNA Biol | 2013 Dec | https://www.ncbi.nlm.nih.gov/pubmed/24448271 |
| Misacylation of tRNA with methionine in Saccharomyces cerevisiae. | Wiltrout E, Goodenbour JM, Fréchin M, Pan T | Nucleic acids research | 22941646 | Nucleic Acids Res | 2012 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/22941646 |
| Modifications and functional genomics of human transfer RNA. | Pan T | Cell research | 29463900 | Cell Res | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29463900 |
| tRNA Misacylation with Methionine in the Mouse Gut Microbiome in Situ. | Schwartz MH, Pan T | Microbial ecology | 28070678 | Microb Ecol | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28070678 |
| Function and origin of mistranslation in distinct cellular contexts. | Schwartz MH, Pan T | Critical reviews in biochemistry and molecular biology | 28075177 | Crit Rev Biochem Mol Biol | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28075177 |
| Adaptive translation as a mechanism of stress response and adaptation. | Pan T | Annual review of genetics | 23988117 | Annu Rev Genet | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23988117 |
| Efficient and quantitative high-throughput tRNA sequencing. | Zheng G, Qin Y, Clark WC, Dai Q, Yi C, He C, Lambowitz AM, Pan T | Nature methods | 26214130 | Nat Methods | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/26214130 |
| Stress Response and Adaptation Mediated by Amino Acid Misincorporation during Protein Synthesis. | Wang X, Pan T | Advances in nutrition (Bethesda, Md.) | 27422514 | Adv Nutr | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27422514 |
| Determining the fidelity of tRNA aminoacylation via microarrays. | Schwartz MH, Pan T | Methods (San Diego, Calif.) | 27639882 | Methods | 2017 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/27639882 |
| tRNA base methylation identification and quantification via high-throughput sequencing. | Clark WC, Evans ME, Dominissini D, Zheng G, Pan T | RNA (New York, N.Y.) | 27613580 | RNA | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27613580 |
| Evolutionary Gain of Alanine Mischarging to Noncognate tRNAs with a G4:U69 Base Pair. | Sun L, Gomes AC, He W, Zhou H, Wang X, Pan DW, Schimmel P, Pan T, Yang XL | Journal of the American Chemical Society | 27622773 | J Am Chem Soc | 2016 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/27622773 |
| Global tRNA misacylation induced by anaerobiosis and antibiotic exposure broadly increases stress resistance in Escherichia coli. | Schwartz MH, Waldbauer JR, Zhang L, Pan T | Nucleic acids research | 27672035 | Nucleic Acids Res | 2016 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/27672035 |
| Interaction of tRNA with MEK2 in pancreatic cancer cells. | Wang X, Chow CR, Ebine K, Lee J, Rosner MR, Pan T, Munshi HG | Scientific reports | 27301426 | Sci Rep | 2016 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/27301426 |
| Temperature dependent mistranslation in a hyperthermophile adapts proteins to lower temperatures. | Schwartz MH, Pan T | Nucleic acids research | 26657639 | Nucleic Acids Res | 2016 Jan 8 | https://www.ncbi.nlm.nih.gov/pubmed/26657639 |
| My adventure in tRNA biology, so far. | Pan T | RNA (New York, N.Y.) | 25780201 | RNA | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25780201 |
| Selective Enzymatic Demethylation of N(2) ,N(2) -Dimethylguanosine in RNA and Its Application in High-Throughput tRNA Sequencing. | Dai Q, Zheng G, Schwartz MH, Clark WC, Pan T | Angewandte Chemie (International ed. in English) | 28371071 | Angew Chem Int Ed Engl | 2017 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/28371071 |
| Codon optimality controls differential mRNA translation during amino acid starvation. | Saikia M, Wang X, Mao Y, Wan J, Pan T, Qian SB | RNA (New York, N.Y.) | 27613579 | RNA | 2016 Nov | https://www.ncbi.nlm.nih.gov/pubmed/27613579 |
| N(6)-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding. | Zhou KI, Parisien M, Dai Q, Liu N, Diatchenko L, Sachleben JR, Pan T | Journal of molecular biology | 26343757 | J Mol Biol | 2016 Feb 27 | https://www.ncbi.nlm.nih.gov/pubmed/26343757 |
| A dual fluorescent reporter for the investigation of methionine mistranslation in live cells. | Gomes AC, Kordala AJ, Strack R, Wang X, Geslain R, Delaney K, Clark WC, Keenan R, Pan T | RNA (New York, N.Y.) | 26729921 | RNA | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26729921 |
| Methionine Mistranslation Bypasses the Restraint of the Genetic Code to Generate Mutant Proteins with Distinct Activities. | Wang X, Pan T | PLoS genetics | 26709516 | PLoS Genet | 2015 Dec | https://www.ncbi.nlm.nih.gov/pubmed/26709516 |
| Structurally derived universal mechanism for the catalytic cycle of the tail-anchored targeting factor Get3. | Fry MY, Najdrová V, Maggiolo AO, Saladi SM, Doležal P, Clemons WM Jr | Nature structural & molecular biology | 35851188 | Nat Struct Mol Biol | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35851188 |
| A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency. | Marshall SS, Niesen MJM, Müller A, Tiemann K, Saladi SM, Galimidi RP, Zhang B, Clemons WM Jr, Miller TF 3rd | Cell reports | 27524616 | Cell Rep | 2016 Aug 23 | https://www.ncbi.nlm.nih.gov/pubmed/27524616 |
| A cationic cysteine-hydrazide as an enrichment tool for the mass spectrometric characterization of bacterial free oligosaccharides. | Jang KS, Nani RR, Kalli A, Levin S, Müller A, Hess S, Reisman SE, Clemons WM Jr | Analytical and bioanalytical chemistry | 26100547 | Anal Bioanal Chem | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26100547 |
| The STI1-domain is a flexible alpha-helical fold with a hydrophobic groove. | Fry MY, Saladi SM, Clemons WM Jr | Protein science : a publication of the Protein Society | 33620121 | Protein Sci | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33620121 |
| Improving membrane protein expression by optimizing integration efficiency. | Niesen MJM, Marshall SS, Miller TF 3rd, Clemons WM Jr | The Journal of biological chemistry | 28918393 | J Biol Chem | 2017 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/28918393 |
| A statistical model for improved membrane protein expression using sequence-derived features. | Saladi SM, Javed N, Müller A, Clemons WM Jr | The Journal of biological chemistry | 29378850 | J Biol Chem | 2018 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/29378850 |
| Structures of Get3d reveal a distinct architecture associated with the emergence of photosynthesis. | Barlow AN, Manu MS, Saladi SM, Tarr PT, Yadav Y, Thinn AMM, Zhu Y, Laganowsky AD, Clemons WM Jr, Ramasamy S | The Journal of biological chemistry | 37100288 | J Biol Chem | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/37100288 |
| Comprehensive proteomic profiling of outer membrane vesicles from Campylobacter jejuni. | Jang KS, Sweredoski MJ, Graham RL, Hess S, Clemons WM Jr | Journal of proteomics | 24382552 | J Proteomics | 2014 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/24382552 |
| The mechanism of the phage-encoded protein antibiotic from ΦX174. | Orta AK, Riera N, Li YE, Tanaka S, Yun HG, Klaic L, Clemons WM Jr | Science (New York, N.Y.) | 37440661 | Science | 2023 Jul 14 | https://www.ncbi.nlm.nih.gov/pubmed/37440661 |
| Chemoenzymatic syntheses of water-soluble lipid I fluorescent probes. | Mitachi K, Siricilla S, Klaic L, Clemons WM Jr, Kurosu M | Tetrahedron letters | 26190869 | Tetrahedron Lett | 2015 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/26190869 |
| Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2. | Lin KF, Fry MY, Saladi SM, Clemons WM Jr | The Journal of biological chemistry | 33610544 | J Biol Chem | 2021 Jan-Jun | https://www.ncbi.nlm.nih.gov/pubmed/33610544 |
| Sequence-based features that are determinant for tail-anchored membrane protein sorting in eukaryotes. | Fry MY, Saladi SM, Cunha A, Clemons WM Jr | Traffic (Copenhagen, Denmark) | 34288289 | Traffic | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34288289 |
| Negative selection of self-reactive chicken B cells requires B cell receptor signaling and is independent of the bursal microenvironment. | Davani D, Pancer Z, Cheroutre H, Ratcliffe MJ | Journal of immunology (Baltimore, Md. : 1950) | 24516196 | J Immunol | 2014 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/24516196 |
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| The Cousa objective: a long-working distance air objective for multiphoton imaging in vivo. | Yu CH, Yu Y, Adsit LM, Chang JT, Barchini J, Moberly AH, Benisty H, Kim J, Young BK, Heng K, Farinella DM, Leikvoll A, Pavan R, Vistein R, Nanfito BR, Hildebrand DGC, Otero-Coronel S, Vaziri A, Goldberg JL, Ricci AJ, Fitzpatrick D, Cardin JA, Higley MJ, Smith GB, Kara P, Nielsen KJ, Smith IT, Smith SL | Nature methods | 38129618 | Nat Methods | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38129618 |
| A blanket of inhibition: functional inferences from dense inhibitory connectivity. | Karnani MM, Agetsuma M, Yuste R | Current opinion in neurobiology | 24440415 | Curr Opin Neurobiol | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24440415 |
| From the neuron doctrine to neural networks. | Yuste R | Nature reviews. Neuroscience | 26152865 | Nat Rev Neurosci | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26152865 |
| Endogenous sequential cortical activity evoked by visual stimuli. | Carrillo-Reid L, Miller JE, Hamm JP, Jackson J, Yuste R | The Journal of neuroscience : the official journal of the Society for Neuroscience | 26063915 | J Neurosci | 2015 Jun 10 | https://www.ncbi.nlm.nih.gov/pubmed/26063915 |
| Optical triggered seizures using a caged 4-Aminopyridine. | Zhao M, McGarry LM, Ma H, Harris S, Berwick J, Yuste R, Schwartz TH | Frontiers in neuroscience | 25698919 | Front Neurosci | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25698919 |
| Super-multiplex vibrational imaging. | Wei L, Chen Z, Shi L, Long R, Anzalone AV, Zhang L, Hu F, Yuste R, Cornish VW, Min W | Nature | 28424513 | Nature | 2017 Apr 27 | https://www.ncbi.nlm.nih.gov/pubmed/28424513 |
| VIP+ interneurons control neocortical activity across brain states. | Jackson J, Ayzenshtat I, Karnani MM, Yuste R | Journal of neurophysiology | 26961109 | J Neurophysiol | 2016 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/26961109 |
| Two-Photon Optogenetic Mapping of Excitatory Synaptic Connectivity and Strength. | Izquierdo-Serra M, Hirtz JJ, Shababo B, Yuste R | iScience | 30268510 | iScience | 2018 Oct 26 | https://www.ncbi.nlm.nih.gov/pubmed/30268510 |
| Flexible Nanopipettes for Minimally Invasive Intracellular Electrophysiology In Vivo. | Jayant K, Wenzel M, Bando Y, Hamm JP, Mandriota N, Rabinowitz JH, Plante IJ, Owen JS, Sahin O, Shepard KL, Yuste R | Cell reports | 30605681 | Cell Rep | 2019 Jan 2 | https://www.ncbi.nlm.nih.gov/pubmed/30605681 |
| Somatostatin Interneurons Control a Key Component of Mismatch Negativity in Mouse Visual Cortex. | Hamm JP, Yuste R | Cell reports | 27396334 | Cell Rep | 2016 Jul 19 | https://www.ncbi.nlm.nih.gov/pubmed/27396334 |
| Orientation Tuning Depends on Spatial Frequency in Mouse Visual Cortex. | Ayzenshtat I, Jackson J, Yuste R | eNeuro | 27699210 | eNeuro | 2016 Sep-Oct | https://www.ncbi.nlm.nih.gov/pubmed/27699210 |
| Reliable and Elastic Propagation of Cortical Seizures In Vivo. | Wenzel M, Hamm JP, Peterka DS, Yuste R | Cell reports | 28658617 | Cell Rep | 2017 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/28658617 |
| Altered Cortical Ensembles in Mouse Models of Schizophrenia. | Hamm JP, Peterka DS, Gogos JA, Yuste R | Neuron | 28384469 | Neuron | 2017 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/28384469 |
| Neuroscience thinks big (and collaboratively). | Kandel ER, Markram H, Matthews PM, Yuste R, Koch C | Nature reviews. Neuroscience | 23958663 | Nat Rev Neurosci | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/23958663 |
| The new century of the brain. | Yuste R, Church GM | Scientific American | 24660326 | Sci Am | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24660326 |
| Two-photon neuronal and astrocytic stimulation with azobenzene-based photoswitches. | Izquierdo-Serra M, Gascón-Moya M, Hirtz JJ, Pittolo S, Poskanzer KE, Ferrer È, Alibés R, Busqué F, Yuste R, Hernando J, Gorostiza P | Journal of the American Chemical Society | 24857186 | J Am Chem Soc | 2014 Jun 18 | https://www.ncbi.nlm.nih.gov/pubmed/24857186 |
| Engineering a genetically-encoded SHG chromophore by electrostatic targeting to the membrane. | Jinno Y, Shoda K, Rial-Verde E, Yuste R, Miyawaki A, Tsutsui H | Frontiers in molecular neuroscience | 25505870 | Front Mol Neurosci | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25505870 |
| Simultaneous Multi-plane Imaging of Neural Circuits. | Yang W, Miller JE, Carrillo-Reid L, Pnevmatikakis E, Paninski L, Yuste R, Peterka DS | Neuron | 26774159 | Neuron | 2016 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/26774159 |
| A miniaturized multi-clamp CMOS amplifier for intracellular neural recording. | Shekar S, Jayant K, Rabadan MA, Tomer R, Yuste R, Shepard KL | Nature electronics | 31850397 | Nat Electron | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/31850397 |
| Role of inhibitory control in modulating focal seizure spread. | Liou JY, Ma H, Wenzel M, Zhao M, Baird-Daniel E, Smith EH, Daniel A, Emerson R, Yuste R, Schwartz TH, Schevon CA | Brain : a journal of neurology | 29757347 | Brain | 2018 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/29757347 |
| Holographic imaging and photostimulation of neural activity. | Yang W, Yuste R | Current opinion in neurobiology | 29660600 | Curr Opin Neurobiol | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29660600 |
| Genetic voltage indicators. | Bando Y, Grimm C, Cornejo VH, Yuste R | BMC biology | 31514747 | BMC Biol | 2019 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/31514747 |
| Comparative Evaluation of Genetically Encoded Voltage Indicators. | Bando Y, Sakamoto M, Kim S, Ayzenshtat I, Yuste R | Cell reports | 30650368 | Cell Rep | 2019 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/30650368 |
| Neuronal photoactivation through second-harmonic near-infrared absorption by gold nanoparticles. | de Boer WDAM, Hirtz JJ, Capretti A, Gregorkiewicz T, Izquierdo-Serra M, Han S, Dupre C, Shymkiv Y, Yuste R | Light, science & applications | 30534369 | Light Sci Appl | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30534369 |
| Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data. | Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W, Ahrens M, Bruno R, Jessell TM, Peterka DS, Yuste R, Paninski L | Neuron | 26774160 | Neuron | 2016 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/26774160 |
| Opening Holes in the Blanket of Inhibition: Localized Lateral Disinhibition by VIP Interneurons. | Karnani MM, Jackson J, Ayzenshtat I, Hamzehei Sichani A, Manoocheri K, Kim S, Yuste R | The Journal of neuroscience : the official journal of the Society for Neuroscience | 27013676 | J Neurosci | 2016 Mar 23 | https://www.ncbi.nlm.nih.gov/pubmed/27013676 |
| Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy. | Quirin S, Vladimirov N, Yang CT, Peterka DS, Yuste R, Ahrens MB | Optics letters | 26974063 | Opt Lett | 2016 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/26974063 |
| Light sheet theta microscopy for rapid high-resolution imaging of large biological samples. | Migliori B, Datta MS, Dupre C, Apak MC, Asano S, Gao R, Boyden ES, Hermanson O, Yuste R, Tomer R | BMC biology | 29843722 | BMC Biol | 2018 May 29 | https://www.ncbi.nlm.nih.gov/pubmed/29843722 |
| Acute Focal Seizures Start As Local Synchronizations of Neuronal Ensembles. | Wenzel M, Hamm JP, Peterka DS, Yuste R | The Journal of neuroscience : the official journal of the Society for Neuroscience | 31427393 | J Neurosci | 2019 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/31427393 |
| Non-overlapping Neural Networks in Hydra vulgaris. | Dupre C, Yuste R | Current biology : CB | 28366745 | Curr Biol | 2017 Apr 24 | https://www.ncbi.nlm.nih.gov/pubmed/28366745 |
| In vivo imaging of neural activity. | Yang W, Yuste R | Nature methods | 28362436 | Nat Methods | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28362436 |
| Spatial distribution of neurons innervated by chandelier cells. | Blazquez-Llorca L, Woodruff A, Inan M, Anderson SA, Yuste R, DeFelipe J, Merchan-Perez A | Brain structure & function | 25056931 | Brain Struct Funct | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25056931 |
| Simultaneous imaging of neural activity in three dimensions. | Quirin S, Jackson J, Peterka DS, Yuste R | Frontiers in neural circuits | 24772066 | Front Neural Circuits | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24772066 |
| Instantaneous three-dimensional sensing using spatial light modulator illumination with extended depth of field imaging. | Quirin S, Peterka DS, Yuste R | Optics express | 23842387 | Opt Express | 2013 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/23842387 |
| moco: Fast Motion Correction for Calcium Imaging. | Dubbs A, Guevara J, Yuste R | Frontiers in neuroinformatics | 26909035 | Front Neuroinform | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26909035 |
| Temporal dynamics in fMRI resting-state activity. | Yuste R, Fairhall AL | Proceedings of the National Academy of Sciences of the United States of America | 25902550 | Proc Natl Acad Sci U S A | 2015 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/25902550 |
| Cooperative Subnetworks of Molecularly Similar Interneurons in Mouse Neocortex. | Karnani MM, Jackson J, Ayzenshtat I, Tucciarone J, Manoocheri K, Snider WG, Yuste R | Neuron | 27021171 | Neuron | 2016 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/27021171 |
| Imprinting and recalling cortical ensembles. | Carrillo-Reid L, Yang W, Bando Y, Peterka DS, Yuste R | Science (New York, N.Y.) | 27516599 | Science | 2016 Aug 12 | https://www.ncbi.nlm.nih.gov/pubmed/27516599 |
| Glial Calcium Waves are Triggered by Seizure Activity and Not Essential for Initiating Ictal Onset or Neurovascular Coupling. | Baird-Daniel E, Daniel AGS, Wenzel M, Li D, Liou JY, Laffont P, Zhao M, Yuste R, Ma H, Schwartz TH | Cerebral cortex (New York, N.Y. : 1991) | 28369176 | Cereb Cortex | 2017 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/28369176 |
| Brain maps at the nanoscale. | Yang W, Yuste R | Nature biotechnology | 30872818 | Nat Biotechnol | 2019 Apr | https://www.ncbi.nlm.nih.gov/pubmed/30872818 |
| Neocortical activity is stimulus- and scale-invariant. | Karimipanah Y, Ma Z, Miller JK, Yuste R, Wessel R | PloS one | 28489906 | PLoS One | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28489906 |
| Two-Color Volumetric Imaging of Neuronal Activity of Cortical Columns. | Han S, Yang W, Yuste R | Cell reports | 31091458 | Cell Rep | 2019 May 14 | https://www.ncbi.nlm.nih.gov/pubmed/31091458 |
| Reduced Repertoire of Cortical Microstates and Neuronal Ensembles in Medically Induced Loss of Consciousness. | Wenzel M, Han S, Smith EH, Hoel E, Greger B, House PA, Yuste R | Cell systems | 31054810 | Cell Syst | 2019 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/31054810 |
| Controlling Visually Guided Behavior by Holographic Recalling of Cortical Ensembles. | Carrillo-Reid L, Han S, Yang W, Akrouh A, Yuste R | Cell | 31257030 | Cell | 2019 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/31257030 |
| Simultaneous two-photon imaging and two-photon optogenetics of cortical circuits in three dimensions. | Yang W, Carrillo-Reid L, Bando Y, Peterka DS, Yuste R | eLife | 29412138 | Elife | 2018 Feb 7 | https://www.ncbi.nlm.nih.gov/pubmed/29412138 |
| Multi-scale approaches for high-speed imaging and analysis of large neural populations. | Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L | PLoS computational biology | 28771570 | PLoS Comput Biol | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28771570 |
| Parvalbumin-Positive Interneurons Regulate Neuronal Ensembles in Visual Cortex. | Agetsuma M, Hamm JP, Tao K, Fujisawa S, Yuste R | Cerebral cortex (New York, N.Y. : 1991) | 29106504 | Cereb Cortex | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29106504 |
| fMRI of retina-originated phosphenes experienced by patients with Leber congenital amaurosis. | Ashtari M, Cyckowski L, Yazdi A, Viands A, Marshall K, Bókkon I, Maguire A, Bennett J | PloS one | 24465873 | PLoS One | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/24465873 |
| Differential targeting of feline photoreceptors by recombinant adeno-associated viral vectors: implications for preclinical gene therapy trials. | Minella AL, Mowat FM, Willett KL, Sledge D, Bartoe JT, Bennett J, Petersen-Jones SM | Gene therapy | 25056608 | Gene Ther | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25056608 |
| Institutional Conflict of Interest. | Bennett J | JAMA ophthalmology | 27583791 | JAMA Ophthalmol | 2016 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/27583791 |
| Single stranded adeno-associated virus achieves efficient gene transfer to anterior segment in the mouse eye. | Wang L, Xiao R, Andres-Mateos E, Vandenberghe LH | PloS one | 28763501 | PLoS One | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28763501 |
| Evaluating Efficiencies of Dual AAV Approaches for Retinal Targeting. | Carvalho LS, Turunen HT, Wassmer SJ, Luna-Velez MV, Xiao R, Bennett J, Vandenberghe LH | Frontiers in neuroscience | 28943836 | Front Neurosci | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28943836 |
| Exosome-associated AAV2 vector mediates robust gene delivery into the murine retina upon intravitreal injection. | Wassmer SJ, Carvalho LS, György B, Vandenberghe LH, Maguire CA | Scientific reports | 28361998 | Sci Rep | 2017 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/28361998 |
| Taking Stock of Retinal Gene Therapy: Looking Back and Moving Forward. | Bennett J | Molecular therapy : the journal of the American Society of Gene Therapy | 28391961 | Mol Ther | 2017 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/28391961 |
| Gene Therapy and Stem Cell Transplantation in Retinal Disease: The New Frontier. | MacLaren RE, Bennett J, Schwartz SD | Ophthalmology | 27664291 | Ophthalmology | 2016 Oct | https://www.ncbi.nlm.nih.gov/pubmed/27664291 |
| Safety and durability of effect of contralateral-eye administration of AAV2 gene therapy in patients with childhood-onset blindness caused by RPE65 mutations: a follow-on phase 1 trial. | Bennett J, Wellman J, Marshall KA, McCague S, Ashtari M, DiStefano-Pappas J, Elci OU, Chung DC, Sun J, Wright JF, Cross DR, Aravand P, Cyckowski LL, Bennicelli JL, Mingozzi F, Auricchio A, Pierce EA, Ruggiero J, Leroy BP, Simonelli F, High KA, Maguire AM | Lancet (London, England) | 27375040 | Lancet | 2016 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/27375040 |
| Evaluation of Dose and Safety of AAV7m8 and AAV8BP2 in the Non-Human Primate Retina. | Ramachandran PS, Lee V, Wei Z, Song JY, Casal G, Cronin T, Willett K, Huckfeldt R, Morgan JI, Aleman TS, Maguire AM, Bennett J | Human gene therapy | 27750461 | Hum Gene Ther | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/27750461 |
| Disruption of CEP290 microtubule/membrane-binding domains causes retinal degeneration. | Drivas TG, Holzbaur EL, Bennett J | The Journal of clinical investigation | 24051377 | J Clin Invest | 2013 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24051377 |
| AAV2.7m8 is a powerful viral vector for inner ear gene therapy. | Isgrig K, McDougald DS, Zhu J, Wang HJ, Bennett J, Chien WW | Nature communications | 30683875 | Nat Commun | 2019 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/30683875 |
| An Autogenously Regulated Expression System for Gene Therapeutic Ocular Applications. | Sochor MA, Vasireddy V, Drivas TG, Wojno A, Doung T, Shpylchak I, Bennicelli J, Chung D, Bennett J, Lewis M | Scientific reports | 26597678 | Sci Rep | 2015 Nov 24 | https://www.ncbi.nlm.nih.gov/pubmed/26597678 |
| Synthetic Adeno-Associated Viral Vector Efficiently Targets Mouse and Nonhuman Primate Retina In Vivo. | Carvalho LS, Xiao R, Wassmer SJ, Langsdorf A, Zinn E, Pacouret S, Shah S, Comander JI, Kim LA, Lim L, Vandenberghe LH | Human gene therapy | 29325457 | Hum Gene Ther | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29325457 |
| Gene therapy restores auditory and vestibular function in a mouse model of Usher syndrome type 1c. | Pan B, Askew C, Galvin A, Heman-Ackah S, Asai Y, Indzhykulian AA, Jodelka FM, Hastings ML, Lentz JJ, Vandenberghe LH, Holt JR, Géléoc GS | Nature biotechnology | 28165476 | Nat Biotechnol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28165476 |
| Progress in gene therapy for neurological disorders. | Simonato M, Bennett J, Boulis NM, Castro MG, Fink DJ, Goins WF, Gray SJ, Lowenstein PR, Vandenberghe LH, Wilson TJ, Wolfe JH, Glorioso JC | Nature reviews. Neurology | 23609618 | Nat Rev Neurol | 2013 May | https://www.ncbi.nlm.nih.gov/pubmed/23609618 |
| AAV8BP2 and AAV8 transduce the mammalian cochlear lateral wall and endolymphatic sac with high efficiency. | Isgrig K, Ishibashi Y, Lee HJ, Zhu J, Grati M, Bennett J, Griffith AJ, Roux I, Chien WW | Molecular therapy. Methods & clinical development | 36034771 | Mol Ther Methods Clin Dev | 2022 Sep 8 | https://www.ncbi.nlm.nih.gov/pubmed/36034771 |
| Immunology of AAV-Mediated Gene Transfer in the Eye. | Willett K, Bennett J | Frontiers in immunology | 24009613 | Front Immunol | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24009613 |
| Plasticity of the human visual system after retinal gene therapy in patients with Leber's congenital amaurosis. | Ashtari M, Zhang H, Cook PA, Cyckowski LL, Shindler KS, Marshall KA, Aravand P, Vossough A, Gee JC, Maguire AM, Baker CI, Bennett J | Science translational medicine | 26180100 | Sci Transl Med | 2015 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/26180100 |
| Exploiting metabolic and antioxidant pathways to maintain vision in blinding disease. | Ramachandran PS, Song JY, Bennett J | The Journal of clinical investigation | 25798615 | J Clin Invest | 2015 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25798615 |
| Efficacy and safety of voretigene neparvovec (AAV2-hRPE65v2) in patients with RPE65-mediated inherited retinal dystrophy: a randomised, controlled, open-label, phase 3 trial. | Russell S, Bennett J, Wellman JA, Chung DC, Yu ZF, Tillman A, Wittes J, Pappas J, Elci O, McCague S, Cross D, Marshall KA, Walshire J, Kehoe TL, Reichert H, Davis M, Raffini L, George LA, Hudson FP, Dingfield L, Zhu X, Haller JA, Sohn EH, Mahajan VB, Pfeifer W, Weckmann M, Johnson C, Gewaily D, Drack A, Stone E, Wachtel K, Simonelli F, Leroy BP, Wright JF, High KA, Maguire AM | Lancet (London, England) | 28712537 | Lancet | 2017 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/28712537 |
| Refining surgical techniques for efficient posterior semicircular canal gene delivery in the adult mammalian inner ear with minimal hearing loss. | Zhu J, Choi JW, Ishibashi Y, Isgrig K, Grati M, Bennett J, Chien W | Scientific reports | 34552193 | Sci Rep | 2021 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/34552193 |
| Amelioration of Neurosensory Structure and Function in Animal and Cellular Models of a Congenital Blindness. | Song JY, Aravand P, Nikonov S, Leo L, Lyubarsky A, Bennicelli JL, Pan J, Wei Z, Shpylchak I, Herrera P, Bennett DJ, Commins N, Maguire AM, Pham J, den Hollander AI, Cremers FPM, Koenekoop RK, Roepman R, Nishina P, Zhou S, Pan W, Ying GS, Aleman TS, de Melo J, McNamara I, Sun J, Mills J, Bennett J | Molecular therapy : the journal of the American Society of Gene Therapy | 29673930 | Mol Ther | 2018 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/29673930 |
| Novel mobility test to assess functional vision in patients with inherited retinal dystrophies. | Chung DC, McCague S, Yu ZF, Thill S, DiStefano-Pappas J, Bennett J, Cross D, Marshall K, Wellman J, High KA | Clinical & experimental ophthalmology | 28697537 | Clin Exp Ophthalmol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28697537 |
| State dependence of noise correlations in macaque primary visual cortex. | Ecker AS, Berens P, Cotton RJ, Subramaniyan M, Denfield GH, Cadwell CR, Smirnakis SM, Bethge M, Tolias AS | Neuron | 24698278 | Neuron | 2014 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/24698278 |
| Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. | Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge M | PLoS computational biology | 29782491 | PLoS Comput Biol | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/29782491 |
| Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity-at Depth and in Real Time. | Moreaux LC, Yatsenko D, Sacher WD, Choi J, Lee C, Kubat NJ, Cotton RJ, Boyden ES, Lin MZ, Tian L, Tolias AS, Poon JKS, Shepard KL, Roukes ML | Neuron | 33058767 | Neuron | 2020 Oct 14 | https://www.ncbi.nlm.nih.gov/pubmed/33058767 |
| Developmental broadening of inhibitory sensory maps. | Quast KB, Ung K, Froudarakis E, Huang L, Herman I, Addison AP, Ortiz-Guzman J, Cordiner K, Saggau P, Tolias AS, Arenkiel BR | Nature neuroscience | 28024159 | Nat Neurosci | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/28024159 |
| Spike sorting for large, dense electrode arrays. | Rossant C, Kadir SN, Goodman DFM, Schulman J, Hunter MLD, Saleem AB, Grosmark A, Belluscio M, Denfield GH, Ecker AS, Tolias AS, Solomon S, Buzsaki G, Carandini M, Harris KD | Nature neuroscience | 26974951 | Nat Neurosci | 2016 Apr | https://www.ncbi.nlm.nih.gov/pubmed/26974951 |
| Macaque monkeys perceive the flash lag illusion. | Subramaniyan M, Ecker AS, Berens P, Tolias AS | PloS one | 23527024 | PLoS One | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/23527024 |
| The effect of noise correlations in populations of diversely tuned neurons. | Ecker AS, Berens P, Tolias AS, Bethge M | The Journal of neuroscience : the official journal of the Society for Neuroscience | 21976512 | J Neurosci | 2011 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/21976512 |
| A neural basis of probabilistic computation in visual cortex. | Walker EY, Cotton RJ, Ma WJ, Tolias AS | Nature neuroscience | 31873286 | Nat Neurosci | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/31873286 |
| Three-dimensional mapping of microcircuit correlation structure. | Cotton RJ, Froudarakis E, Storer P, Saggau P, Tolias AS | Frontiers in neural circuits | 24133414 | Front Neural Circuits | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24133414 |
| Structural, interpersonal, psychosocial, and behavioral risk factors for HIV acquisition among female bar workers in Dar es Salaam, Tanzania. | Barnhart DA, Harling G, Muya A, Ortblad KF, Mashasi I, Dambach P, Ulenga N, Mboggo E, Oldenburg CE, Bärnighausen TW, Spiegelman D | AIDS care | 31079476 | AIDS Care | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31079476 |
| Augmented pseudo-likelihood estimation for two-phase studies. | Rivera-Rodriguez C, Haneuse S, Wang M, Spiegelman D | Statistical methods in medical research | 30834815 | Stat Methods Med Res | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30834815 |
| Spiegelman and Zhou Respond. | Spiegelman D, Zhou X | American journal of public health | 30726133 | Am J Public Health | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30726133 |
| Partial Identification of the Average Treatment Effect Using Instrumental Variables: Review of Methods for Binary Instruments, Treatments, and Outcomes. | Swanson SA, Hernán MA, Miller M, Robins JM, Richardson TS | Journal of the American Statistical Association | 31537952 | J Am Stat Assoc | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/31537952 |
| Multiple robust estimation of marginal structural mean models for unconstrained outcomes. | Babino L, Rotnitzky A, Robins J | Biometrics | 30004573 | Biometrics | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30004573 |
| Assessing Individual and Disseminated Effects in Network-Randomized Studies. | Buchanan AL, Vermund SH, Friedman SR, Spiegelman D | American journal of epidemiology | 30052722 | Am J Epidemiol | 2018 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/30052722 |
| Access of choice-disabled young women in Botswana to government structural support programmes: a cross-sectional study. | Cockcroft A, Marokoane N, Kgakole L, Tswetla N, Andersson N | AIDS care | 29848044 | AIDS Care | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29848044 |
| The effect of risk factor misclassification on the partial population attributable risk. | Wong BHW, Peskoe SB, Spiegelman D | Statistics in medicine | 29333614 | Stat Med | 2018 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/29333614 |
| Estimation and Inference for the Mediation Proportion. | Nevo D, Liao X, Spiegelman D | The international journal of biostatistics | 28930628 | Int J Biostat | 2017 Sep 20 | https://www.ncbi.nlm.nih.gov/pubmed/28930628 |
| Prevalence estimation when disease status is verified only among test positives: Applications in HIV screening programs. | G Thomas E, B Peskoe S, Spiegelman D | Statistics in medicine | 29230839 | Stat Med | 2018 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/29230839 |
| The Association of Cooking Fuel Use, Dietary Intake, and Blood Pressure among Rural Women in China. | Bellows AL, Spiegelman D, Du S, Jaacks LM | International journal of environmental research and public health | 32751678 | Int J Environ Res Public Health | 2020 Jul 30 | https://www.ncbi.nlm.nih.gov/pubmed/32751678 |
| Worksite intervention study to prevent diabetes in Nepal: a randomised trial protocol. | Pyakurel P, Shrestha A, Karmacharya BM, Budhathoki SS, Chaudhari RK, Tamrakar D, Shrestha A, Karmacharya RM, Shrestha A, Sharma S, Sharma SK, Spiegelman D | Open heart | 32847993 | Open Heart | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/32847993 |
| Coaching Intensity, Adherence to Essential Birth Practices, and Health Outcomes in the BetterBirth Trial in Uttar Pradesh, India. | Barnhart DA, Spiegelman D, Zigler CM, Kara N, Delaney MM, Kalita T, Maji P, Hirschhorn LR, Semrau KEA | Global health, science and practice | 32127359 | Glob Health Sci Pract | 2020 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/32127359 |
| Evaluating Public Health Interventions: 6. Modeling Ratios or Differences? Let the Data Tell Us. | Spiegelman D, VanderWeele TJ | American journal of public health | 28590865 | Am J Public Health | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28590865 |
| Evaluating Public Health Interventions: 1. Examples, Definitions, and a Personal Note. | Spiegelman D | American journal of public health | 26562122 | Am J Public Health | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26562122 |
| Impact of the Affordable Care Act on Colorectal Cancer Incidence and Mortality. | Lee C, Kushi LH, Reed ME, Eldridge EH, Lee JK, Zhang J, Spiegelman D | American journal of preventive medicine | 34763959 | Am J Prev Med | 2022 Mar | https://www.ncbi.nlm.nih.gov/pubmed/34763959 |
| Estimating the natural indirect effect and the mediation proportion via the product method. | Cheng C, Spiegelman D, Li F | BMC medical research methodology | 34800985 | BMC Med Res Methodol | 2021 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/34800985 |
| Assessing Direct and Spillover Effects of Intervention Packages in Network-Randomized Studies. | Buchanan AL, Hernández-Ramírez RU, Lok JJ, Vermund SH, Friedman SR, Forastiere L, Spiegelman D | medRxiv : the preprint server for health sciences | 38352598 | medRxiv | 2024 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/38352598 |
| Dietary interventions to prevent and manage diabetes in worksite settings: a meta-analysis. | Shrestha A, Karmacharya BM, Khudyakov P, Weber MB, Spiegelman D | Journal of occupational health | 29187673 | J Occup Health | 2018 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/29187673 |
| Spiegelman Responds. | Spiegelman D | American journal of public health | 27153027 | Am J Public Health | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27153027 |
| Evaluating Public Health Interventions: 5. Causal Inference in Public Health Research-Do Sex, Race, and Biological Factors Cause Health Outcomes? | Glymour MM, Spiegelman D | American journal of public health | 27854526 | Am J Public Health | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/27854526 |
| Evaluating Public Health Interventions: 4. The Nurses' Health Study and Methods for Eliminating Bias Attributable to Measurement Error and Misclassification. | Spiegelman D | American journal of public health | 27509282 | Am J Public Health | 2016 Sep | https://www.ncbi.nlm.nih.gov/pubmed/27509282 |
| Evaluating Public Health Interventions: 3. The Two-Stage Design for Confounding Bias Reduction-Having Your Cake and Eating It Two. | Spiegelman D, Rivera-Rodriguez CL, Haneuse S | American journal of public health | 27285260 | Am J Public Health | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/27285260 |
| A note on "Design and analysis of stepped wedge cluster randomized trials". | Liao X, Zhou X, Spiegelman D | Contemporary clinical trials | 26394003 | Contemp Clin Trials | 2015 Nov | https://www.ncbi.nlm.nih.gov/pubmed/26394003 |
| How are qualitative methods used in implementation science research? A scoping review protocol. | Hagaman A, Rhodes EC, Nyhan K, Katague M, Schwartz A, Spiegelman D | JBI evidence synthesis | 33323772 | JBI Evid Synth | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33323772 |
| Assessing the quality of tuberculosis care using routine surveillance data: a process evaluation employing the Zero TB Indicator Framework in Mongolia. | Saranjav A, Parisi C, Zhou X, Dorjnamjil K, Samdan T, Erdenebaatar S, Chuluun A, Dalkh T, Ganbaatar G, Brooks MB, Spiegelman D, Ganmaa D, Davis JL | BMJ open | 35973702 | BMJ Open | 2022 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/35973702 |
| The fidelity of implementation of recommended care for children with malaria by community health workers in Nigeria. | Adeoti O, Spiegelman D, Afonne C, Falade CO, Jegede AS, Oshiname FO, Gomes M, Ajayi IO | Implementation science : IS | 32131852 | Implement Sci | 2020 Mar 4 | https://www.ncbi.nlm.nih.gov/pubmed/32131852 |
| Optimizing the development and evaluation of complex interventions: lessons learned from the BetterBirth Program and associated trial. | Barnhart DA, Semrau KEA, Zigler CM, Molina RL, Delaney MM, Hirschhorn LR, Spiegelman D | Implementation science communications | 32885188 | Implement Sci Commun | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/32885188 |
| Estimation in the Cox survival regression model with covariate measurement error and a changepoint. | Agami S, Zucker DM, Spiegelman D | Biometrical journal. Biometrische Zeitschrift | 32003495 | Biom J | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/32003495 |
| Impact of the Affordable Care Act on Colorectal Cancer Outcomes: A Systematic Review. | Xu MR, Kelly AMB, Kushi LH, Reed ME, Koh HK, Spiegelman D | American journal of preventive medicine | 32008799 | Am J Prev Med | 2020 Apr | https://www.ncbi.nlm.nih.gov/pubmed/32008799 |
| Nepal Pioneer Worksite Intervention Study to lower cardio-metabolic risk factors: design and protocol. | Shrestha A, Tamrakar D, Karmacharya BM, Shrestha A, Shrestha R, Bhatta RD, Pyakurel P, Khudyakov P, Malik V, Mattei J, Spiegelman D | BMC cardiovascular disorders | 30819098 | BMC Cardiovasc Disord | 2019 Feb 28 | https://www.ncbi.nlm.nih.gov/pubmed/30819098 |
| Facilitators and barriers to healthy eating in a worksite cafeteria: a qualitative study. | Stern D, Blanco I, Olmos LA, Valdivia JJ, Shrestha A, Mattei J, Spiegelman D | BMC public health | 34022846 | BMC Public Health | 2021 May 22 | https://www.ncbi.nlm.nih.gov/pubmed/34022846 |
| There is no impact of exposure measurement error on latency estimation in linear models. | Peskoe SB, Spiegelman D, Wang M | Statistics in medicine | 30515870 | Stat Med | 2019 Mar 30 | https://www.ncbi.nlm.nih.gov/pubmed/30515870 |
| On the Analysis of Case-Control Studies in Cluster-correlated Data Settings. | Haneuse S, Rivera-Rodriguez C | Epidemiology (Cambridge, Mass.) | 29068840 | Epidemiology | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29068840 |
| Correcting for bias due to mismeasured exposure in mediation analysis with a survival outcome. | Cheng C, Spiegelman D, Li F | Journal of the Royal Statistical Society. Series C, Applied statistics | 40837827 | J R Stat Soc Ser C Appl Stat | 2025 Nov | https://www.ncbi.nlm.nih.gov/pubmed/40837827 |
| Intra-Cluster Correlation Estimates for HIV-related Outcomes from Care and Treatment Clinics in Dar es Salaam, Tanzania. | Barnhart D, Hertzmark E, Liu E, Mungure E, Muya AN, Sando D, Chalamilla G, Ulenga N, Bärnighausen T, Fawzi W, Spiegelman D | Contemporary clinical trials communications | 27766318 | Contemp Clin Trials Commun | 2016 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/27766318 |
| Evaluating Public Health Interventions: 7. Let the Subject Matter Choose the Effect Measure: Ratio, Difference, or Something Else Entirely. | Spiegelman D, Khudyakov P, Wang M, Vanderweele TJ | American journal of public health | 29161073 | Am J Public Health | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29161073 |
| Survival analysis with functions of mismeasured covariate histories: the case of chronic air pollution exposure in relation to mortality in the nurses' health study. | Liao X, Zhou X, Wang M, Hart JE, Laden F, Spiegelman D | Journal of the Royal Statistical Society. Series C, Applied statistics | 29430064 | J R Stat Soc Ser C Appl Stat | 2018 Feb | https://www.ncbi.nlm.nih.gov/pubmed/29430064 |
| Service readiness of health facilities in Bangladesh, Haiti, Kenya, Malawi, Namibia, Nepal, Rwanda, Senegal, Uganda and the United Republic of Tanzania. | Leslie HH, Spiegelman D, Zhou X, Kruk ME | Bulletin of the World Health Organization | 29147054 | Bull World Health Organ | 2017 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/29147054 |
| A maximum likelihood approach to power calculations for stepped wedge designs of binary outcomes. | Zhou X, Liao X, Kunz LM, Normand ST, Wang M, Spiegelman D | Biostatistics (Oxford, England) | 30084949 | Biostatistics | 2020 Jan 1 | https://www.ncbi.nlm.nih.gov/pubmed/30084949 |
| Health system measurement: Harnessing machine learning to advance global health. | Leslie HH, Zhou X, Spiegelman D, Kruk ME | PloS one | 30289935 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30289935 |
| On the analysis of two-phase designs in cluster-correlated data settings. | Rivera-Rodriguez C, Spiegelman D, Haneuse S | Statistics in medicine | 31359448 | Stat Med | 2019 Oct 15 | https://www.ncbi.nlm.nih.gov/pubmed/31359448 |
| Association of the US President's Emergency Plan for AIDS Relief's Funding With Prevention of Mother-to-Child Transmission of HIV in Kenya. | Barnhart DA, Tsikhutsu I, Kirui D, Sawe F, Muli J, Sugut W, Abboud N, Birx D, Hamm T, Coakley P, Hickey PW, Wolfman V, Lee E, Spiegelman D | JAMA network open | 31517966 | JAMA Netw Open | 2019 Sep 4 | https://www.ncbi.nlm.nih.gov/pubmed/31517966 |
| Comparison of HPV-16 and HPV-18 Genotyping and Cytological Testing as Triage Testing Within Human Papillomavirus-Based Screening in Mexico. | Torres-Ibarra L, Cuzick J, Lorincz AT, Spiegelman D, Lazcano-Ponce E, Franco EL, Moscicki AB, Mahmud SM, Wheeler CM, Rivera-Paredez B, Hernández-López R, León-Maldonado L, Salmerón J, FRIDA Study Group. | JAMA network open | 31747033 | JAMA Netw Open | 2019 Nov 1 | https://www.ncbi.nlm.nih.gov/pubmed/31747033 |
| Drivers of healthy eating in a workplace in Nepal: a qualitative study. | Tamrakar D, Shrestha A, Rai A, Karmacharya BM, Malik V, Mattei J, Spiegelman D | BMJ open | 32102804 | BMJ Open | 2020 Feb 25 | https://www.ncbi.nlm.nih.gov/pubmed/32102804 |
| Exposure misclassification in propensity score-based time-to-event data analysis. | Yang Y, Wang M | Statistical methods in medical research | 33826453 | Stat Methods Med Res | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33826453 |
| ANALYSIS OF "LEARN-AS-YOU-GO" (LAGO) STUDIES. | Nevo D, Lok JJ, Spiegelman D | Annals of statistics | 35510045 | Ann Stat | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/35510045 |
| swdpwr: A SAS macro and an R package for power calculations in stepped wedge cluster randomized trials. | Chen J, Zhou X, Li F, Spiegelman D | Computer methods and programs in biomedicine | 34818620 | Comput Methods Programs Biomed | 2022 Jan | https://www.ncbi.nlm.nih.gov/pubmed/34818620 |
| Mediation analysis in the presence of continuous exposure measurement error. | Cheng C, Spiegelman D, Li F | Statistics in medicine | 36869626 | Stat Med | 2023 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/36869626 |
| Assessing Direct and Spillover Effects of Intervention Packages in Network-randomized Studies. | Buchanan AL, Hernández-Ramírez RU, Lok JJ, Vermund SH, Friedman SR, Forastiere L, Spiegelman D | Epidemiology (Cambridge, Mass.) | 38709023 | Epidemiology | 2024 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/38709023 |
| Effects of a dietary intervention on cardiometabolic risk and food consumption in a workplace. | Shrestha A, Tamrakar D, Ghinanju B, Shrestha D, Khadka P, Adhikari B, Shrestha J, Waiwa S, Pyakurel P, Bhandari N, Karmacharya BM, Shrestha A, Shrestha R, Bhatta RD, Malik V, Mattei J, Spiegelman D | PloS one | 38656951 | PLoS One | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38656951 |
| Evaluating Public Health Interventions: 2. Stepping Up to Routine Public Health Evaluation With the Stepped Wedge Design. | Spiegelman D | American journal of public health | 26885961 | Am J Public Health | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26885961 |
| "Cross-sectional" stepped wedge designs always reduce the required sample size when there is no time effect. | Zhou X, Liao X, Spiegelman D | Journal of clinical epidemiology | 28093263 | J Clin Epidemiol | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28093263 |
| Diet and Health - What Should We Eat ? | Shrestha A, Spiegelman D | Kathmandu University medical journal (KUMJ) | 30353891 | Kathmandu Univ Med J (KUMJ) | 2017 Jul-Sept. | https://www.ncbi.nlm.nih.gov/pubmed/30353891 |
| Evaluating Public Health Interventions: 8. Causal Inference for Time-Invariant Interventions. | Spiegelman D, Zhou X | American journal of public health | 30024804 | Am J Public Health | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30024804 |
| Inverse probability weighted estimation of risk under representative interventions in observational studies. | Young JG, Logan RW, Robins JM, Hernán MA | Journal of the American Statistical Association | 31564760 | J Am Stat Assoc | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31564760 |
| Facilitators and barriers to healthy eating in a worksite cafeteria: a qualitative study from Nepal. | Shrestha A, Pyakurel P, Shrestha A, Gautam R, Manandhar N, Rhodes E, Tamrakar D, Karmacharya BM, Malik V, Mattei J, Spiegelman D | Heart Asia | 29225703 | Heart Asia | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29225703 |
| Interpretation of the Individual Effect Under Treatment Spillover. | Crawford FW, Morozova O, Buchanan AL, Spiegelman D | American journal of epidemiology | 31094425 | Am J Epidemiol | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31094425 |
| Overall, Direct, Spillover, and Composite Effects of Components of a Peer-Driven Intervention Package on Injection Risk Behavior Among People Who Inject Drugs in the HPTN 037 Study. | Hernández-Ramírez RU, Spiegelman D, Lok JJ, Forastiere L, Friedman SR, Latkin CA, Vermund SH, Buchanan AL | AIDS and behavior | 37932493 | AIDS Behav | 2024 Jan | https://www.ncbi.nlm.nih.gov/pubmed/37932493 |
| Deficient spermiogenesis in mice lacking Rlim. | Wang F, Gervasi MG, Bošković A, Sun F, Rinaldi VD, Yu J, Wallingford MC, Tourzani DA, Mager J, Zhu LJ, Rando OJ, Visconti PE, Strittmatter L, Bach I | eLife | 33620316 | Elife | 2021 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/33620316 |
| I'm eating for two: parental dietary effects on offspring metabolism. | Rando OJ, Simmons RA | Cell | 25815988 | Cell | 2015 Mar 26 | https://www.ncbi.nlm.nih.gov/pubmed/25815988 |
| Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals. | Sharma U, Conine CC, Shea JM, Boskovic A, Derr AG, Bing XY, Belleannee C, Kucukural A, Serra RW, Sun F, Song L, Carone BR, Ricci EP, Li XZ, Fauquier L, Moore MJ, Sullivan R, Mello CC, Garber M, Rando OJ | Science (New York, N.Y.) | 26721685 | Science | 2016 Jan 22 | https://www.ncbi.nlm.nih.gov/pubmed/26721685 |
| Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice. | Conine CC, Sun F, Song L, Rivera-Pérez JA, Rando OJ | Developmental cell | 30057276 | Dev Cell | 2018 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/30057276 |
| Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome. | Shea JM, Serra RW, Carone BR, Shulha HP, Kucukural A, Ziller MJ, Vallaster MP, Gu H, Tapper AR, Gardner PD, Meissner A, Garber M, Rando OJ | Developmental cell | 26702833 | Dev Cell | 2015 Dec 21 | https://www.ncbi.nlm.nih.gov/pubmed/26702833 |
| Father-son chats: inheriting stress through sperm RNA. | Sharma U, Rando OJ | Cell metabolism | 24896534 | Cell Metab | 2014 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/24896534 |
| Regulation of X-linked gene expression during early mouse development by Rlim. | Wang F, Shin J, Shea JM, Yu J, Bošković A, Byron M, Zhu X, Shalek AK, Regev A, Lawrence JB, Torres EM, Zhu LJ, Rando OJ, Bach I | eLife | 27642011 | Elife | 2016 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/27642011 |
| Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation. | Chou HJ, Donnard E, Gustafsson HT, Garber M, Rando OJ | Molecular cell | 29198561 | Mol Cell | 2017 Dec 7 | https://www.ncbi.nlm.nih.gov/pubmed/29198561 |
| Rlim-Dependent and -Independent Pathways for X Chromosome Inactivation in Female ESCs. | Wang F, McCannell KN, Bošković A, Zhu X, Shin J, Yu J, Gallant J, Byron M, Lawrence JB, Zhu LJ, Jones SN, Rando OJ, Fazzio TG, Bach I | Cell reports | 29281819 | Cell Rep | 2017 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/29281819 |
| Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm. | Sharma U, Sun F, Conine CC, Reichholf B, Kukreja S, Herzog VA, Ameres SL, Rando OJ | Developmental cell | 30057273 | Dev Cell | 2018 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/30057273 |
| Deletion of Topoisomerase 1 in excitatory neurons causes genomic instability and early onset neurodegeneration. | Fragola G, Mabb AM, Taylor-Blake B, Niehaus JK, Chronister WD, Mao H, Simon JM, Yuan H, Li Z, McConnell MJ, Zylka MJ | Nature communications | 32327659 | Nat Commun | 2020 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/32327659 |
| Identification of chemicals that mimic transcriptional changes associated with autism, brain aging and neurodegeneration. | Pearson BL, Simon JM, McCoy ES, Salazar G, Fragola G, Zylka MJ | Nature communications | 27029645 | Nat Commun | 2016 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/27029645 |
| Topoisomerase 1 inhibition reversibly impairs synaptic function. | Mabb AM, Kullmann PH, Twomey MA, Miriyala J, Philpot BD, Zylka MJ | Proceedings of the National Academy of Sciences of the United States of America | 25404338 | Proc Natl Acad Sci U S A | 2014 Dec 2 | https://www.ncbi.nlm.nih.gov/pubmed/25404338 |
| Gene length matters in neurons. | Zylka MJ, Simon JM, Philpot BD | Neuron | 25905808 | Neuron | 2015 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/25905808 |
| Enhanced Nociception in Angelman Syndrome Model Mice. | McCoy ES, Taylor-Blake B, Aita M, Simon JM, Philpot BD, Zylka MJ | The Journal of neuroscience : the official journal of the Society for Neuroscience | 28931574 | J Neurosci | 2017 Oct 18 | https://www.ncbi.nlm.nih.gov/pubmed/28931574 |
| Toward a conceptual framework for early brain and behavior development in autism. | Piven J, Elison JT, Zylka MJ | Molecular psychiatry | 28937691 | Mol Psychiatry | 2017 Oct | https://www.ncbi.nlm.nih.gov/pubmed/28937691 |
| The Troubled Touch of Autism. | Tuttle AH, Bartsch VB, Zylka MJ | Cell | 27419865 | Cell | 2016 Jul 14 | https://www.ncbi.nlm.nih.gov/pubmed/27419865 |
| An Autism-Linked Mutation Disables Phosphorylation Control of UBE3A. | Yi JJ, Berrios J, Newbern JM, Snider WD, Philpot BD, Hahn KM, Zylka MJ | Cell | 26255772 | Cell | 2015 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/26255772 |
| Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life. | Jiménez JA, Ptacek TS, Tuttle AH, Schmid RS, Moy SS, Simon JM, Zylka MJ | Molecular autism | 33023670 | Mol Autism | 2020 Oct 5 | https://www.ncbi.nlm.nih.gov/pubmed/33023670 |
| High-throughput screening and classification of chemicals and their effects on neuronal gene expression using RASL-seq. | Simon JM, Paranjape SR, Wolter JM, Salazar G, Zylka MJ | Scientific reports | 30872602 | Sci Rep | 2019 Mar 14 | https://www.ncbi.nlm.nih.gov/pubmed/30872602 |
| Choice of vehicle affects pyraclostrobin toxicity in mice. | Tuttle AH, Salazar G, Cooper EM, Stapleton HM, Zylka MJ | Chemosphere | 30497033 | Chemosphere | 2019 Mar | https://www.ncbi.nlm.nih.gov/pubmed/30497033 |
| The autism-linked UBE3A T485A mutant E3 ubiquitin ligase activates the Wnt/β-catenin pathway by inhibiting the proteasome. | Yi JJ, Paranjape SR, Walker MP, Choudhury R, Wolter JM, Fragola G, Emanuele MJ, Major MB, Zylka MJ | The Journal of biological chemistry | 28559284 | J Biol Chem | 2017 Jul 28 | https://www.ncbi.nlm.nih.gov/pubmed/28559284 |
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| Maternal Ube3a Loss Disrupts Sleep Homeostasis But Leaves Circadian Rhythmicity Largely Intact. | Ehlen JC, Jones KA, Pinckney L, Gray CL, Burette S, Weinberg RJ, Evans JA, Brager AJ, Zylka MJ, Paul KN, Philpot BD, DeBruyne JP | The Journal of neuroscience : the official journal of the Society for Neuroscience | 26446213 | J Neurosci | 2015 Oct 7 | https://www.ncbi.nlm.nih.gov/pubmed/26446213 |
| Topoisomerase 1 Regulates Gene Expression in Neurons through Cleavage Complex-Dependent and -Independent Mechanisms. | Mabb AM, Simon JM, King IF, Lee HM, An LK, Philpot BD, Zylka MJ | PloS one | 27231886 | PLoS One | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/27231886 |
| Single-cell transcriptomic analysis of mouse neocortical development. | Loo L, Simon JM, Xing L, McCoy ES, Niehaus JK, Guo J, Anton ES, Zylka MJ | Nature communications | 30635555 | Nat Commun | 2019 Jan 11 | https://www.ncbi.nlm.nih.gov/pubmed/30635555 |
| lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA. | Schertzer MD, Braceros KCA, Starmer J, Cherney RE, Lee DM, Salazar G, Justice M, Bischoff SR, Cowley DO, Ariel P, Zylka MJ, Dowen JM, Magnuson T, Calabrese JM | Molecular cell | 31256989 | Mol Cell | 2019 Aug 8 | https://www.ncbi.nlm.nih.gov/pubmed/31256989 |
| A deep neural network to assess spontaneous pain from mouse facial expressions. | Tuttle AH, Molinaro MJ, Jethwa JF, Sotocinal SG, Prieto JC, Styner MA, Mogil JS, Zylka MJ | Molecular pain | 29546805 | Mol Pain | 2018 Jan-Dec | https://www.ncbi.nlm.nih.gov/pubmed/29546805 |
| Mouse-human experimental epigenetic analysis unmasks dietary targets and genetic liability for diabetic phenotypes. | Multhaup ML, Seldin MM, Jaffe AE, Lei X, Kirchner H, Mondal P, Li Y, Rodriguez V, Drong A, Hussain M, Lindgren C, McCarthy M, Näslund E, Zierath JR, Wong GW, Feinberg AP | Cell metabolism | 25565211 | Cell Metab | 2015 Jan 6 | https://www.ncbi.nlm.nih.gov/pubmed/25565211 |
| Potential energy landscapes identify the information-theoretic nature of the epigenome. | Jenkinson G, Pujadas E, Goutsias J, Feinberg AP | Nature genetics | 28346445 | Nat Genet | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28346445 |
| Improving Metabolic Health Through Precision Dietetics in Mice. | Barrington WT, Wulfridge P, Wells AE, Rojas CM, Howe SYF, Perry A, Hua K, Pellizzon MA, Hansen KD, Voy BH, Bennett BJ, Pomp D, Feinberg AP, Threadgill DW | Genetics | 29158425 | Genetics | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29158425 |
| Determinants of Adiposity Rebound Timing in Children. | Ip EH, Marshall SA, Saldana S, Skelton JA, Suerken CK, Arcury TA, Quandt SA | The Journal of pediatrics | 28242030 | J Pediatr | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28242030 |
| DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis. | Kular L, Liu Y, Ruhrmann S, Zheleznyakova G, Marabita F, Gomez-Cabrero D, James T, Ewing E, Lindén M, Górnikiewicz B, Aeinehband S, Stridh P, Link J, Andlauer TFM, Gasperi C, Wiendl H, Zipp F, Gold R, Tackenberg B, Weber F, Hemmer B, Strauch K, Heilmann-Heimbach S, Rawal R, Schminke U, Schmidt CO, Kacprowski T, Franke A, Laudes M, Dilthey AT, Celius EG, Søndergaard HB, Tegnér J, Harbo HF, Oturai AB, Olafsson S, Eggertsson HP, Halldorsson BV, Hjaltason H, Olafsson E, Jonsdottir I, Stefansson K, Olsson T, Piehl F, Ekström TJ, Kockum I, Feinberg AP, Jagodic M | Nature communications | 29921915 | Nat Commun | 2018 Jun 19 | https://www.ncbi.nlm.nih.gov/pubmed/29921915 |
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| Genetically Determined Later Puberty Impacts Lowered Bone Mineral Density in Childhood and Adulthood. | Cousminer DL, Mitchell JA, Chesi A, Roy SM, Kalkwarf HJ, Lappe JM, Gilsanz V, Oberfield SE, Shepherd JA, Kelly A, McCormack SE, Voight BF, Zemel BS, Grant SF | Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research | 29068475 | J Bone Miner Res | 2018 Mar | https://www.ncbi.nlm.nih.gov/pubmed/29068475 |
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| Biased gene conversion skews allele frequencies in human populations, increasing the disease burden of recessive alleles. | Lachance J, Tishkoff SA | American journal of human genetics | 25279983 | Am J Hum Genet | 2014 Oct 2 | https://www.ncbi.nlm.nih.gov/pubmed/25279983 |
| Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection. | Hsieh P, Veeramah KR, Lachance J, Tishkoff SA, Wall JD, Hammer MF, Gutenkunst RN | Genome research | 26888263 | Genome Res | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26888263 |
| Identifying Darwinian selection acting on different human APOL1 variants among diverse African populations. | Ko WY, Rajan P, Gomez F, Scheinfeldt L, An P, Winkler CA, Froment A, Nyambo TB, Omar SA, Wambebe C, Ranciaro A, Hirbo JB, Tishkoff SA | American journal of human genetics | 23768513 | Am J Hum Genet | 2013 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/23768513 |
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| A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals. | Sobota RS, Stein CM, Kodaman N, Scheinfeldt LB, Maro I, Wieland-Alter W, Igo RP Jr, Magohe A, Malone LL, Chervenak K, Hall NB, Modongo C, Zetola N, Matee M, Joloba M, Froment A, Nyambo TB, Moore JH, Scott WK, Lahey T, Boom WH, von Reyn CF, Tishkoff SA, Sirugo G, Williams SM | American journal of human genetics | 26942285 | Am J Hum Genet | 2016 Mar 3 | https://www.ncbi.nlm.nih.gov/pubmed/26942285 |
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| Minor Changes in Expression of the Mismatch Repair Protein MSH2 Exert a Major Impact on Glioblastoma Response to Temozolomide. | McFaline-Figueroa JL, Braun CJ, Stanciu M, Nagel ZD, Mazzucato P, Sangaraju D, Cerniauskas E, Barford K, Vargas A, Chen Y, Tretyakova N, Lees JA, Hemann MT, White FM, Samson LD | Cancer research | 26025730 | Cancer Res | 2015 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/26025730 |
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| Poly(catecholamine) coated CsPbBr(3) perovskite microlasers: lasing in water and biofunctionalization. | Cho S, Yun SH | Advanced functional materials | 34539305 | Adv Funct Mater | 2021 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/34539305 |
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| Conformal Coating of Freestanding Particles by Vapor-Phase Infiltration. | Liapis AC, Subramanian A, Cho S, Kisslinger K, Nam CY, Yun SH | Advanced materials interfaces | 33708471 | Adv Mater Interfaces | 2020 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/33708471 |
| Supershear surface waves reveal prestress and anisotropy of soft materials. | Li GY, Feng X, Ramier A, Yun SH | Journal of the mechanics and physics of solids | 37828998 | J Mech Phys Solids | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/37828998 |
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| Precise photoelectrochemical tuning of semiconductor microdisk lasers. | Sarkar D, Dannenberg PH, Martino N, Kim KH, Yun SH | Advanced photonics | 38993283 | Adv Photonics | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/38993283 |
| Whispering-gallery-mode emission from biological luminescent protein microcavity assemblies. | Humar M, Yun SH | Optica | 29046889 | Optica | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29046889 |
| Label-free histological imaging of tissues using Brillouin light scattering contrast. | Ryu S, Martino N, Kwok SJJ, Bernstein L, Yun SH | Biomedical optics express | 33796364 | Biomed Opt Express | 2021 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/33796364 |
| Laser particle activated cell sorting in microfluidics. | Dannenberg PH, Kang J, Martino N, Kashiparekh A, Forward S, Wu J, Liapis AC, Wang J, Yun SH | Lab on a chip | 35621381 | Lab Chip | 2022 Jun 14 | https://www.ncbi.nlm.nih.gov/pubmed/35621381 |
| Compact Quantum-Dot Microbeads with Sub-Nanometer Emission Linewidth. | Kim KH, Dannenberg PH, Yan H, Cho S, Yun SH | Advanced functional materials | 35418816 | Adv Funct Mater | 2021 Nov 25 | https://www.ncbi.nlm.nih.gov/pubmed/35418816 |
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| Intracellular temperature mapping with fluorescence-assisted photoacoustic-thermometry. | Gao L, Zhang C, Li C, Wang LV | Applied physics letters | 23825801 | Appl Phys Lett | 2013 May 13 | https://www.ncbi.nlm.nih.gov/pubmed/23825801 |
| Optical clearing-aided photoacoustic microscopy with enhanced resolution and imaging depth. | Zhou Y, Yao J, Wang LV | Optics letters | 23939121 | Opt Lett | 2013 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/23939121 |
| Calibration-free in vivo transverse blood flowmetry based on cross correlation of slow time profiles from photoacoustic microscopy. | Zhou Y, Liang J, Maslov KI, Wang LV | Optics letters | 24081077 | Opt Lett | 2013 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/24081077 |
| Noise-equivalent sensitivity of photoacoustics. | Winkler AM, Maslov K, Wang LV | Journal of biomedical optics | 24026425 | J Biomed Opt | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/24026425 |
| Optical-resolution photoacoustic microscopy: auscultation of biological systems at the cellular level. | Hu S, Wang LV | Biophysical journal | 23972836 | Biophys J | 2013 Aug 20 | https://www.ncbi.nlm.nih.gov/pubmed/23972836 |
| Random-access optical-resolution photoacoustic microscopy using a digital micromirror device. | Liang J, Zhou Y, Winkler AW, Wang L, Maslov KI, Li C, Wang LV | Optics letters | 23903111 | Opt Lett | 2013 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/23903111 |
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| Photoacoustic thermography of tissue. | Ke H, Tai S, Wang LV | Journal of biomedical optics | 24522803 | J Biomed Opt | 2014 Feb | https://www.ncbi.nlm.nih.gov/pubmed/24522803 |
| Focused fluorescence excitation with time-reversed ultrasonically encoded light and imaging in thick scattering media. | Lai P, Suzuki Y, Xu X, Wang LV | Laser physics letters | 24465244 | Laser Phys Lett | 2013 | https://www.ncbi.nlm.nih.gov/pubmed/24465244 |
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| High-sensitivity ultrasound-modulated optical tomography with a photorefractive polymer. | Suzuki Y, Lai P, Xu X, Wang L | Optics letters | 23503253 | Opt Lett | 2013 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/23503253 |
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| Breakthrough in Photonics 2013: Photoacoustic Tomography in Biomedicine. | Yao J, Wang LV | IEEE photonics journal | 25383143 | IEEE Photonics J | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/25383143 |
| Photoacoustic lymphatic imaging with high spatial-temporal resolution. | Martel C, Yao J, Huang CH, Zou J, Randolph GJ, Wang LV | Journal of biomedical optics | 25408958 | J Biomed Opt | 2014 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25408958 |
| Focusing light through biological tissue and tissue-mimicking phantoms up to 9.6 cm in thickness with digital optical phase conjugation. | Shen Y, Liu Y, Ma C, Wang LV | Journal of biomedical optics | 27533439 | J Biomed Opt | 2016 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/27533439 |
| In vivo superresolution photoacoustic computed tomography by localization of single dyed droplets. | Zhang P, Li L, Lin L, Shi J, Wang LV | Light, science & applications | 30962922 | Light Sci Appl | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/30962922 |
| Single-shot real-time femtosecond imaging of temporal focusing. | Liang J, Zhu L, Wang LV | Light, science & applications | 30839588 | Light Sci Appl | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30839588 |
| Noninvasive Determination of Melanoma Depth using a Handheld Photoacoustic Probe. | Zhou Y, Tripathi SV, Rosman I, Ma J, Hai P, Linette GP, Council ML, Fields RC, Wang LV, Cornelius LA | The Journal of investigative dermatology | 28163070 | J Invest Dermatol | 2017 Jun | https://www.ncbi.nlm.nih.gov/pubmed/28163070 |
| Single-breath-hold photoacoustic computed tomography of the breast. | Lin L, Hu P, Shi J, Appleton CM, Maslov K, Li L, Zhang R, Wang LV | Nature communications | 29907740 | Nat Commun | 2018 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/29907740 |
| Small near-infrared photochromic protein for photoacoustic multi-contrast imaging and detection of protein interactions in vivo. | Li L, Shemetov AA, Baloban M, Hu P, Zhu L, Shcherbakova DM, Zhang R, Shi J, Yao J, Wang LV, Verkhusha VV | Nature communications | 30013153 | Nat Commun | 2018 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/30013153 |
| Photoacoustic tomography of vascular compliance in humans. | Hai P, Zhou Y, Liang J, Li C, Wang LV | Journal of biomedical optics | 26720875 | J Biomed Opt | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/26720875 |
| Label-free automated three-dimensional imaging of whole organs by microtomy-assisted photoacoustic microscopy. | Wong TTW, Zhang R, Zhang C, Hsu HC, Maslov KI, Wang L, Shi J, Chen R, Shung KK, Zhou Q, Wang LV | Nature communications | 29123109 | Nat Commun | 2017 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/29123109 |
| Space- and intensity-constrained reconstruction for compressed ultrafast photography. | Zhu L, Chen Y, Liang J, Xu Q, Gao L, Ma C, Wang LV | Optica | 28775997 | Optica | 2016 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28775997 |
| Focusing light through scattering media by polarization modulation based generalized digital optical phase conjugation. | Yang J, Shen Y, Liu Y, Hemphill AS, Wang LV | Applied physics letters | 29203931 | Appl Phys Lett | 2017 Nov 13 | https://www.ncbi.nlm.nih.gov/pubmed/29203931 |
| Single-shot stereo-polarimetric compressed ultrafast photography for light-speed observation of high-dimensional optical transients with picosecond resolution. | Liang J, Wang P, Zhu L, Wang LV | Nature communications | 33067438 | Nat Commun | 2020 Oct 16 | https://www.ncbi.nlm.nih.gov/pubmed/33067438 |
| Real-time frequency-encoded spatiotemporal focusing through scattering media using a programmable 2D ultrafine optical frequency comb. | Wei X, Shen Y, Jing JC, Hemphill AS, Yang C, Xu S, Yang Z, Wang LV | Science advances | 32128401 | Sci Adv | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32128401 |
| Picosecond-resolution phase-sensitive imaging of transparent objects in a single shot. | Kim T, Liang J, Zhu L, Wang LV | Science advances | 32010772 | Sci Adv | 2020 Jan | https://www.ncbi.nlm.nih.gov/pubmed/32010772 |
| Focusing light inside live tissue using reversibly switchable bacterial phytochrome as a genetically encoded photochromic guide star. | Yang J, Li L, Shemetov AA, Lee S, Zhao Y, Liu Y, Shen Y, Li J, Oka Y, Verkhusha VV, Wang LV | Science advances | 31844671 | Sci Adv | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31844671 |
| Multiscale photoacoustic tomography using reversibly switchable bacterial phytochrome as a near-infrared photochromic probe. | Yao J, Kaberniuk AA, Li L, Shcherbakova DM, Zhang R, Wang L, Li G, Verkhusha VV, Wang LV | Nature methods | 26550774 | Nat Methods | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/26550774 |
| Photoacoustic elastography. | Hai P, Yao J, Li G, Li C, Wang LV | Optics letters | 26872173 | Opt Lett | 2016 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/26872173 |
| Three-dimensional photoacoustic endoscopic imaging of the rabbit esophagus. | Yang JM, Favazza C, Yao J, Chen R, Zhou Q, Shung KK, Wang LV | PloS one | 25874640 | PLoS One | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25874640 |
| Tutorial on photoacoustic tomography. | Zhou Y, Yao J, Wang LV | Journal of biomedical optics | 27086868 | J Biomed Opt | 2016 Jun | https://www.ncbi.nlm.nih.gov/pubmed/27086868 |
| Bit-efficient, sub-millisecond wavefront measurement using a lock-in camera for time-reversal based optical focusing inside scattering media. | Liu Y, Ma C, Shen Y, Wang LV | Optics letters | 27192226 | Opt Lett | 2016 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/27192226 |
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| Cuffing-based photoacoustic flowmetry in humans in the optical diffusive regime. | Zhou Y, Liang J, Wang LV | Journal of biophotonics | 26515158 | J Biophotonics | 2016 Mar | https://www.ncbi.nlm.nih.gov/pubmed/26515158 |
| Handheld photoacoustic microscopy to detect melanoma depth in vivo. | Zhou Y, Xing W, Maslov KI, Cornelius LA, Wang LV | Optics letters | 25121860 | Opt Lett | 2014 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/25121860 |
| Handheld photoacoustic probe to detect both melanoma depth and volume at high speed in vivo. | Zhou Y, Li G, Zhu L, Li C, Cornelius LA, Wang LV | Journal of biophotonics | 25676898 | J Biophotonics | 2015 Nov | https://www.ncbi.nlm.nih.gov/pubmed/25676898 |
| High-resolution deep functional imaging of the whole mouse brain by photoacoustic computed tomography in vivo. | Zhang P, Li L, Lin L, Hu P, Shi J, He Y, Zhu L, Zhou Y, Wang LV | Journal of biophotonics | 28635056 | J Biophotonics | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28635056 |
| Sub-Nyquist sampling boosts targeted light transport through opaque scattering media. | Shen Y, Liu Y, Ma C, Wang LV | Optica | 28670607 | Optica | 2017 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/28670607 |
| A review of snapshot multidimensional optical imaging: measuring photon tags in parallel. | Gao L, Wang LV | Physics reports | 27134340 | Phys Rep | 2016 Feb 29 | https://www.ncbi.nlm.nih.gov/pubmed/27134340 |
| Single-shot real-time video recording of a photonic Mach cone induced by a scattered light pulse. | Liang J, Ma C, Zhu L, Chen Y, Gao L, Wang LV | Science advances | 28116357 | Sci Adv | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28116357 |
| Lock-in camera based heterodyne holography for ultrasound-modulated optical tomography inside dynamic scattering media. | Liu Y, Shen Y, Ma C, Shi J, Wang LV | Applied physics letters | 27493275 | Appl Phys Lett | 2016 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/27493275 |
| Handheld optical-resolution photoacoustic microscopy. | Lin L, Zhang P, Xu S, Shi J, Li L, Yao J, Wang L, Zou J, Wang LV | Journal of biomedical optics | 27775746 | J Biomed Opt | 2017 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/27775746 |
| Focusing light through scattering media by full-polarization digital optical phase conjugation. | Shen Y, Liu Y, Ma C, Wang LV | Optics letters | 26977651 | Opt Lett | 2016 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/26977651 |
| Photoacoustic tomography imaging and estimation of oxygen saturation of hemoglobin in ocular tissue of rabbits. | Hennen SN, Xing W, Shui YB, Zhou Y, Kalishman J, Andrews-Kaminsky LB, Kass MA, Beebe DC, Maslov KI, Wang LV | Experimental eye research | 26048477 | Exp Eye Res | 2015 Sep | https://www.ncbi.nlm.nih.gov/pubmed/26048477 |
| Analog time-reversed ultrasonically encoded light focusing inside scattering media with a 33,000× optical power gain. | Ma C, Xu X, Wang LV | Scientific reports | 25753905 | Sci Rep | 2015 Mar 10 | https://www.ncbi.nlm.nih.gov/pubmed/25753905 |
| Optical-resolution photoacoustic endomicroscopy in vivo. | Yang JM, Li C, Chen R, Rao B, Yao J, Yeh CH, Danielli A, Maslov K, Zhou Q, Shung KK, Wang LV | Biomedical optics express | 25798315 | Biomed Opt Express | 2015 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/25798315 |
| Encrypted Three-dimensional Dynamic Imaging using Snapshot Time-of-flight Compressed Ultrafast Photography. | Liang J, Gao L, Hai P, Li C, Wang LV | Scientific reports | 26503834 | Sci Rep | 2015 Oct 27 | https://www.ncbi.nlm.nih.gov/pubmed/26503834 |
| Dual-Modality Photoacoustic and Ultrasound Imaging System for Noninvasive Sentinel Lymph Node Detection in Patients with Breast Cancer. | Garcia-Uribe A, Erpelding TN, Krumholz A, Ke H, Maslov K, Appleton C, Margenthaler JA, Wang LV | Scientific reports | 26510774 | Sci Rep | 2015 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/26510774 |
| Time-reversed ultrasonically encoded optical focusing through highly scattering ex vivo human cataractous lenses. | Liu Y, Shen Y, Ruan H, Brodie FL, Wong TTW, Yang C, Wang LV | Journal of biomedical optics | 29322749 | J Biomed Opt | 2018 Jan | https://www.ncbi.nlm.nih.gov/pubmed/29322749 |
| Recent progress in photoacoustic molecular imaging. | Yao J, Wang LV | Current opinion in chemical biology | 29631120 | Curr Opin Chem Biol | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/29631120 |
| Label-free cell nuclear imaging by Grüneisen relaxation photoacoustic microscopy. | Liu X, Wong TTW, Shi J, Ma J, Yang Q, Wang LV | Optics letters | 29444034 | Opt Lett | 2018 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/29444034 |
| Wide-field two-dimensional multifocal optical-resolution photoacoustic-computed microscopy. | Xia J, Li G, Wang L, Nasiriavanaki M, Maslov K, Engelbach JA, Garbow JR, Wang LV | Optics letters | 24322226 | Opt Lett | 2013 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/24322226 |
| Slow-sound photoacoustic microscopy. | Zhang C, Zhou Y, Li C, Wang LV | Applied physics letters | 23696693 | Appl Phys Lett | 2013 Apr 22 | https://www.ncbi.nlm.nih.gov/pubmed/23696693 |
| Graphene-based contrast agents for photoacoustic and thermoacoustic tomography. | Lalwani G, Cai X, Nie L, Wang LV, Sitharaman B | Photoacoustics | 24490141 | Photoacoustics | 2013 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/24490141 |
| Small-animal whole-body photoacoustic tomography: a review. | Xia J, Wang LV | IEEE transactions on bio-medical engineering | 24108456 | IEEE Trans Biomed Eng | 2014 May | https://www.ncbi.nlm.nih.gov/pubmed/24108456 |
| Multicontrast photoacoustic in vivo imaging using near-infrared fluorescent proteins. | Krumholz A, Shcherbakova DM, Xia J, Wang LV, Verkhusha VV | Scientific reports | 24487319 | Sci Rep | 2014 Feb 3 | https://www.ncbi.nlm.nih.gov/pubmed/24487319 |
| Spatially Fourier-encoded photoacoustic microscopy using a digital micromirror device. | Liang J, Gao L, Li C, Wang LV | Optics letters | 24487832 | Opt Lett | 2014 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/24487832 |
| Ultrasonically encoded photoacoustic flowgraphy in biological tissue. | Wang L, Xia J, Yao J, Maslov KI, Wang LV | Physical review letters | 24289689 | Phys Rev Lett | 2013 Nov 15 | https://www.ncbi.nlm.nih.gov/pubmed/24289689 |
| Photoacoustic recovery after photothermal bleaching in living cells. | Li C, Zhang C, Gao L, Garcia-Uribe A, Wang LV | Journal of biomedical optics | 24089253 | J Biomed Opt | 2013 Oct | https://www.ncbi.nlm.nih.gov/pubmed/24089253 |
| Time-reversed ultrasonically encoded optical focusing using two ultrasonic transducers for improved ultrasonic axial resolution. | Yang Q, Xu X, Lai P, Xu D, Wang LV | Journal of biomedical optics | 24194060 | J Biomed Opt | 2013 Nov | https://www.ncbi.nlm.nih.gov/pubmed/24194060 |
| Catheter-based photoacoustic endoscope. | Yang JM, Li C, Chen R, Zhou Q, Shung KK, Wang LV | Journal of biomedical optics | 24887743 | J Biomed Opt | 2014 Jun | https://www.ncbi.nlm.nih.gov/pubmed/24887743 |
| Dependence of optical scattering from Intralipid in gelatin-gel based tissue-mimicking phantoms on mixing temperature and time. | Lai P, Xu X, Wang LV | Journal of biomedical optics | 24604534 | J Biomed Opt | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24604534 |
| High-speed alignment optimization of digital optical phase conjugation systems based on autocovariance analysis in conjunction with orthonormal rectangular polynomials. | Hemphill AS, Shen Y, Hwang J, Wang LV | Journal of biomedical optics | 30156064 | J Biomed Opt | 2018 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30156064 |
| Angular-spectrum modeling of focusing light inside scattering media by optical phase conjugation. | Yang J, Li J, He S, Wang LV | Optica | 32025534 | Optica | 2019 Mar 20 | https://www.ncbi.nlm.nih.gov/pubmed/32025534 |
| Label-free high-throughput photoacoustic tomography of suspected circulating melanoma tumor cells in patients in vivo. | Hai P, Qu Y, Li Y, Zhu L, Shmuylovich L, Cornelius LA, Wang LV | Journal of biomedical optics | 32170857 | J Biomed Opt | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32170857 |
| High-resolution, high-contrast mid-infrared imaging of fresh biological samples with ultraviolet-localized photoacoustic microscopy. | Shi J, Wong TTW, He Y, Li L, Zhang R, Yung CS, Hwang J, Maslov K, Wang LV | Nature photonics | 31440304 | Nat Photonics | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31440304 |
| Synthetic Bessel light needle for extended depth-of-field microscopy. | Yang J, Gong L, Shen Y, Wang LV | Applied physics letters | 30449893 | Appl Phys Lett | 2018 Oct 29 | https://www.ncbi.nlm.nih.gov/pubmed/30449893 |
| Dual-axis illumination for virtually augmenting the detection view of optical-resolution photoacoustic microscopy. | Hsu HC, Li L, Yao J, Wong TTW, Shi J, Chen R, Zhou Q, Wang L | Journal of biomedical optics | 29981225 | J Biomed Opt | 2018 Jul | https://www.ncbi.nlm.nih.gov/pubmed/29981225 |
| Single-exposure optical focusing inside scattering media using binarized time-reversed adapted perturbation. | Ma C, Zhou F, Liu Y, Wang LV | Optica | 30221184 | Optica | 2015 Oct | https://www.ncbi.nlm.nih.gov/pubmed/30221184 |
| Structured-illumination photoacoustic Doppler flowmetry of axial flow in homogeneous scattering media. | Zhang R, Yao J, Maslov KI, Wang LV | Applied physics letters | 24065864 | Appl Phys Lett | 2013 Aug 26 | https://www.ncbi.nlm.nih.gov/pubmed/24065864 |
| Enhancement of photoacoustic tomography by ultrasonic computed tomography based on optical excitation of elements of a full-ring transducer array. | Xia J, Huang C, Maslov K, Anastasio MA, Wang LV | Optics letters | 24104670 | Opt Lett | 2013 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/24104670 |
| Calibration-free quantification of absolute oxygen saturation based on the dynamics of photoacoustic signals. | Xia J, Danielli A, Liu Y, Wang L, Maslov K, Wang LV | Optics letters | 23903146 | Opt Lett | 2013 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/23903146 |
| Bessel-beam Grueneisen relaxation photoacoustic microscopy with extended depth of field. | Shi J, Wang L, Noordam C, Wang LV | Journal of biomedical optics | 26524679 | J Biomed Opt | 2015 Nov | https://www.ncbi.nlm.nih.gov/pubmed/26524679 |
| Dichroism-sensitive photoacoustic computed tomography. | Qu Y, Li L, Shen Y, Wei X, Wong TTW, Hu P, Yao J, Maslov K, Wang LV | Optica | 30820444 | Optica | 2018 Apr 20 | https://www.ncbi.nlm.nih.gov/pubmed/30820444 |
| Transvaginal fast-scanning optical-resolution photoacoustic endoscopy. | Qu Y, Li C, Shi J, Chen R, Xu S, Rafsanjani H, Maslov K, Krigman H, Garvey L, Hu P, Zhao P, Meyers K, Diveley E, Pizzella S, Muench L, Punyamurthy N, Goldstein N, Onwumere O, Alisio M, Meyenburg K, Maynard J, Helm K, Slaughter J, Barber S, Burger T, Kramer C, Chubiz J, Anderson M, McCarthy R, England SK, Macones GA, Zhou Q, Shung KK, Zou J, Stout MJ, Tuuli M, Wang LV | Journal of biomedical optics | 30520276 | J Biomed Opt | 2018 Dec | https://www.ncbi.nlm.nih.gov/pubmed/30520276 |
| High-throughput, label-free, single-cell photoacoustic microscopy of intratumoral metabolic heterogeneity. | Hai P, Imai T, Xu S, Zhang R, Aft RL, Zou J, Wang LV | Nature biomedical engineering | 30936431 | Nat Biomed Eng | 2019 May | https://www.ncbi.nlm.nih.gov/pubmed/30936431 |
| In vivo photoacoustic microscopy of human cuticle microvasculature with single-cell resolution. | Hsu HC, Wang L, Wang LV | Journal of biomedical optics | 27207113 | J Biomed Opt | 2016 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/27207113 |
| Microvascular quantification based on contour-scanning photoacoustic microscopy. | Yeh C, Soetikno B, Hu S, Maslov KI, Wang LV | Journal of biomedical optics | 25223708 | J Biomed Opt | 2014 Sep | https://www.ncbi.nlm.nih.gov/pubmed/25223708 |
| Multiscale Functional and Molecular Photoacoustic Tomography. | Yao J, Xia J, Wang LV | Ultrasonic imaging | 25933617 | Ultrason Imaging | 2016 Jan | https://www.ncbi.nlm.nih.gov/pubmed/25933617 |
| High-speed label-free functional photoacoustic microscopy of mouse brain in action. | Yao J, Wang L, Yang JM, Maslov KI, Wong TT, Li L, Huang CH, Zou J, Wang LV | Nature methods | 25822799 | Nat Methods | 2015 May | https://www.ncbi.nlm.nih.gov/pubmed/25822799 |
| In vivo photoacoustic flowmetry at depths of the diffusive regime based on saline injection. | Zhou Y, Poudel J, Li G, Wang LV | Journal of biomedical optics | 26267364 | J Biomed Opt | 2015 Aug | https://www.ncbi.nlm.nih.gov/pubmed/26267364 |
| Fast label-free multilayered histology-like imaging of human breast cancer by photoacoustic microscopy. | Wong TTW, Zhang R, Hai P, Zhang C, Pleitez MA, Aft RL, Novack DV, Wang LV | Science advances | 28560329 | Sci Adv | 2017 May | https://www.ncbi.nlm.nih.gov/pubmed/28560329 |
| Single-impulse Panoramic Photoacoustic Computed Tomography of Small-animal Whole-body Dynamics at High Spatiotemporal Resolution. | Li L, Zhu L, Ma C, Lin L, Yao J, Wang L, Maslov K, Zhang R, Chen W, Shi J, Wang LV | Nature biomedical engineering | 29333331 | Nat Biomed Eng | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/29333331 |
| High-speed single-shot optical focusing through dynamic scattering media with full-phase wavefront shaping. | Hemphill AS, Shen Y, Liu Y, Wang LV | Applied physics letters | 29249832 | Appl Phys Lett | 2017 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/29249832 |
| Focusing light inside dynamic scattering media with millisecond digital optical phase conjugation. | Liu Y, Ma C, Shen Y, Shi J, Wang LV | Optica | 28815194 | Optica | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/28815194 |
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| Tripling the detection view of high-frequency linear-array-based photoacoustic computed tomography by using two planar acoustic reflectors. | Li G, Xia J, Wang K, Maslov K, Anastasio MA, Wang LV | Quantitative imaging in medicine and surgery | 25694954 | Quant Imaging Med Surg | 2015 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25694954 |
| Multi-view optical resolution photoacoustic microscopy. | Zhu L, Li L, Gao L, Wang LV | Optica | 25558469 | Optica | 2014 | https://www.ncbi.nlm.nih.gov/pubmed/25558469 |
| Continuous scanning of a time-reversed ultrasonically encoded optical focus by reflection-mode digital phase conjugation. | Suzuki Y, Tay JW, Yang Q, Wang LV | Optics letters | 24978506 | Opt Lett | 2014 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/24978506 |
| Fully motorized optical-resolution photoacoustic microscopy. | Li L, Yeh C, Hu S, Wang L, Soetikno BT, Chen R, Zhou Q, Shung KK, Maslov KI, Wang LV | Optics letters | 24686689 | Opt Lett | 2014 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/24686689 |
| Calibration-free absolute quantification of particle concentration by statistical analyses of photoacoustic signals in vivo. | Zhou Y, Yao J, Maslov KI, Wang LV | Journal of biomedical optics | 24589987 | J Biomed Opt | 2014 Mar | https://www.ncbi.nlm.nih.gov/pubmed/24589987 |
| Plasmonics-enhanced and optically modulated delivery of gold nanostars into brain tumor. | Yuan H, Wilson CM, Xia J, Doyle SL, Li S, Fales AM, Liu Y, Ozaki E, Mulfaul K, Hanna G, Palmer GM, Wang LV, Grant GA, Vo-Dinh T | Nanoscale | 24619405 | Nanoscale | 2014 Apr 21 | https://www.ncbi.nlm.nih.gov/pubmed/24619405 |
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| Microcirculatory changes identified by photoacoustic microscopy in patients with complex regional pain syndrome type I after stellate ganglion blocks. | Zhou Y, Yi X, Xing W, Hu S, Maslov KI, Wang LV | Journal of biomedical optics | 25144451 | J Biomed Opt | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/25144451 |
| Near-infrared optical-resolution photoacoustic microscopy. | Hai P, Yao J, Maslov KI, Zhou Y, Wang LV | Optics letters | 25166107 | Opt Lett | 2014 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/25166107 |
| Frequency-swept time-reversed ultrasonically encoded optical focusing. | Suzuki Y, Wang LV | Applied physics letters | 25425744 | Appl Phys Lett | 2014 Nov 10 | https://www.ncbi.nlm.nih.gov/pubmed/25425744 |
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| High-resolution photoacoustic tomography of resting-state functional connectivity in the mouse brain. | Nasiriavanaki M, Xia J, Wan H, Bauer AQ, Culver JP, Wang LV | Proceedings of the National Academy of Sciences of the United States of America | 24367107 | Proc Natl Acad Sci U S A | 2014 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/24367107 |
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| Calibration-free structured-illumination photoacoustic flowgraphy of transverse flow in scattering media. | Yao J, Gilson RC, Maslov KI, Wang L, Wang LV | Journal of biomedical optics | 24718385 | J Biomed Opt | 2014 Apr | https://www.ncbi.nlm.nih.gov/pubmed/24718385 |
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| Cross-correlation-based transverse flow measurements using optical resolution photoacoustic microscopy with a digital micromirror device. | Liang J, Zhou Y, Maslov KI, Wang LV | Journal of biomedical optics | 24002191 | J Biomed Opt | 2013 Sep | https://www.ncbi.nlm.nih.gov/pubmed/24002191 |
| Nonlinear light-sheet fluorescence microscopy by photobleaching imprinting. | Gao L, Zhu L, Li C, Wang LV | Journal of the Royal Society, Interface | 24478278 | J R Soc Interface | 2014 Apr 6 | https://www.ncbi.nlm.nih.gov/pubmed/24478278 |
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| Label-free photoacoustic microscopy of peripheral nerves. | Matthews TP, Zhang C, Yao DK, Maslov K, Wang LV | Journal of biomedical optics | 24395587 | J Biomed Opt | 2014 Jan | https://www.ncbi.nlm.nih.gov/pubmed/24395587 |
| Photoacoustic measurement of the Grüneisen parameter of tissue. | Yao DK, Zhang C, Maslov K, Wang LV | Journal of biomedical optics | 24474512 | J Biomed Opt | 2014 Jan | https://www.ncbi.nlm.nih.gov/pubmed/24474512 |
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| Reversibly switchable fluorescence microscopy with enhanced resolution and image contrast. | Yao J, Shcherbakova DM, Li C, Krumholz A, Lorca RA, Reinl E, England SK, Verkhusha VV, Wang LV | Journal of biomedical optics | 25144452 | J Biomed Opt | 2014 Aug | https://www.ncbi.nlm.nih.gov/pubmed/25144452 |
| Retrospective respiration-gated whole-body photoacoustic computed tomography of mice. | Xia J, Chen W, Maslov K, Anastasio MA, Wang LV | Journal of biomedical optics | 24395586 | J Biomed Opt | 2014 Jan | https://www.ncbi.nlm.nih.gov/pubmed/24395586 |
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| Photoacoustic and optical coherence tomography of epilepsy with high temporal and spatial resolution and dual optical contrasts. | Tsytsarev V, Rao B, Maslov KI, Li L, Wang LV | Journal of neuroscience methods | 23603664 | J Neurosci Methods | 2013 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/23603664 |
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| Deep-tissue photoacoustic tomography of Förster resonance energy transfer. | Wang Y, Xia J, Wang LV | Journal of biomedical optics | 23884608 | J Biomed Opt | 2013 Oct | https://www.ncbi.nlm.nih.gov/pubmed/23884608 |
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| alphaVbeta3-targeted copper nanoparticles incorporating an Sn 2 lipase-labile fumagillin prodrug for photoacoustic neovascular imaging and treatment. | Zhang R, Pan D, Cai X, Yang X, Senpan A, Allen JS, Lanza GM, Wang LV | Theranostics | 25553103 | Theranostics | 2015 | https://www.ncbi.nlm.nih.gov/pubmed/25553103 |
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| 5,10-methenyltetrahydrofolate synthetase deficiency causes a neurometabolic disorder associated with microcephaly, epilepsy, and cerebral hypomyelination. | Rodan LH, Qi W, Ducker GS, Demirbas D, Laine R, Yang E, Walker MA, Eichler F, Rabinowitz JD, Anselm I, Berry GT, Undiagnosed Diseases Network (UDN) | Molecular genetics and metabolism | 30031689 | Mol Genet Metab | 2018 Sep | https://www.ncbi.nlm.nih.gov/pubmed/30031689 |
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| Glucose-6-Phosphate Dehydrogenase Is Not Essential for K-Ras-Driven Tumor Growth or Metastasis. | Ghergurovich JM, Esposito M, Chen Z, Wang JZ, Bhatt V, Lan T, White E, Kang Y, Guo JY, Rabinowitz JD | Cancer research | 32661137 | Cancer Res | 2020 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/32661137 |
| Glucose feeds the TCA cycle via circulating lactate. | Hui S, Ghergurovich JM, Morscher RJ, Jang C, Teng X, Lu W, Esparza LA, Reya T, Le Zhan, Yanxiang Guo J, White E, Rabinowitz JD | Nature | 29045397 | Nature | 2017 Nov 2 | https://www.ncbi.nlm.nih.gov/pubmed/29045397 |
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| Quantitative Analysis of NAD Synthesis-Breakdown Fluxes. | Liu L, Su X, Quinn WJ 3rd, Hui S, Krukenberg K, Frederick DW, Redpath P, Zhan L, Chellappa K, White E, Migaud M, Mitchison TJ, Baur JA, Rabinowitz JD | Cell metabolism | 29685734 | Cell Metab | 2018 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/29685734 |
| GCN2 adapts protein synthesis to scavenging-dependent growth. | Nofal M, Wang T, Yang L, Jankowski CSR, Hsin-Jung Li S, Han S, Parsons L, Frese AN, Gitai Z, Anthony TG, Wühr M, Sabatini DM, Rabinowitz JD | Cell systems | 34706266 | Cell Syst | 2022 Feb 16 | https://www.ncbi.nlm.nih.gov/pubmed/34706266 |
| Sex and genetic background define the metabolic, physiologic, and molecular response to protein restriction. | Green CL, Pak HH, Richardson NE, Flores V, Yu D, Tomasiewicz JL, Dumas SN, Kredell K, Fan JW, Kirsh C, Chaiyakul K, Murphy ME, Babygirija R, Barrett-Wilt GA, Rabinowitz J, Ong IM, Jang C, Simcox J, Lamming DW | Cell metabolism | 35108511 | Cell Metab | 2022 Feb 1 | https://www.ncbi.nlm.nih.gov/pubmed/35108511 |
| Spatially resolved isotope tracing reveals tissue metabolic activity. | Wang L, Xing X, Zeng X, Jackson SR, TeSlaa T, Al-Dalahmah O, Samarah LZ, Goodwin K, Yang L, McReynolds MR, Li X, Wolff JJ, Rabinowitz JD, Davidson SM | Nature methods | 35132243 | Nat Methods | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35132243 |
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| NAD precursors cycle between host tissues and the gut microbiome. | Chellappa K, McReynolds MR, Lu W, Zeng X, Makarov M, Hayat F, Mukherjee S, Bhat YR, Lingala SR, Shima RT, Descamps HC, Cox T, Ji L, Jankowski C, Chu Q, Davidson SM, Thaiss CA, Migaud ME, Rabinowitz JD, Baur JA | Cell metabolism | 36476934 | Cell Metab | 2022 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/36476934 |
| Extraction and Quantitation of Nicotinamide Adenine Dinucleotide Redox Cofactors. | Lu W, Wang L, Chen L, Hui S, Rabinowitz JD | Antioxidants & redox signaling | 28497978 | Antioxid Redox Signal | 2018 Jan 20 | https://www.ncbi.nlm.nih.gov/pubmed/28497978 |
| The metabolites NADP(+) and NADPH are the targets of the circadian protein Nocturnin (Curled). | Estrella MA, Du J, Chen L, Rath S, Prangley E, Chitrakar A, Aoki T, Schedl P, Rabinowitz J, Korennykh A | Nature communications | 31147539 | Nat Commun | 2019 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/31147539 |
| Perinatal high fat diet and early life methyl donor supplementation alter one carbon metabolism and DNA methylation in the brain. | McKee SE, Zhang S, Chen L, Rabinowitz JD, Reyes TM | Journal of neurochemistry | 29423909 | J Neurochem | 2018 Jun | https://www.ncbi.nlm.nih.gov/pubmed/29423909 |
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| Many circulating indole and phenol metabolites are host derived. | AbuSalim JE, Olszewski K, Youssef S, Hunter CJ, MacArthur MR, Henneberg A, Ryseck RP, Opitz CA, Donia MS, Rabinowitz JD | bioRxiv : the preprint server for biology | 41279320 | bioRxiv | 2025 Oct 6 | https://www.ncbi.nlm.nih.gov/pubmed/41279320 |
| CRISPR-Cas9 mediated one-step disabling of pancreatogenesis in pigs. | Wu J, Vilarino M, Suzuki K, Okamura D, Bogliotti YS, Park I, Rowe J, McNabb B, Ross PJ, Belmonte JCI | Scientific reports | 28874671 | Sci Rep | 2017 Sep 5 | https://www.ncbi.nlm.nih.gov/pubmed/28874671 |
| Generation of Blastocyst-like Structures from Mouse Embryonic and Adult Cell Cultures. | Li R, Zhong C, Yu Y, Liu H, Sakurai M, Yu L, Min Z, Shi L, Wei Y, Takahashi Y, Liao HK, Qiao J, Deng H, Nuñez-Delicado E, Rodriguez Esteban C, Wu J, Izpisua Belmonte JC | Cell | 31626770 | Cell | 2019 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/31626770 |
| Functional sensory circuits built from neurons of two species. | Throesch BT, Bin Imtiaz MK, Muñoz-Castañeda R, Sakurai M, Hartzell AL, James KN, Rodriguez AR, Martin G, Lippi G, Kupriyanov S, Wu Z, Osten P, Izpisua Belmonte JC, Wu J, Baldwin KK | Cell | 38670072 | Cell | 2024 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/38670072 |
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| MAIT cells are imprinted by the microbiota in early life and promote tissue repair. | Constantinides MG, Link VM, Tamoutounour S, Wong AC, Perez-Chaparro PJ, Han SJ, Chen YE, Li K, Farhat S, Weckel A, Krishnamurthy SR, Vujkovic-Cvijin I, Linehan JL, Bouladoux N, Merrill ED, Roy S, Cua DJ, Adams EJ, Bhandoola A, Scharschmidt TC, Aubé J, Fischbach MA, Belkaid Y | Science (New York, N.Y.) | 31649166 | Science | 2019 Oct 25 | https://www.ncbi.nlm.nih.gov/pubmed/31649166 |
| A metabolic pathway for bile acid dehydroxylation by the gut microbiome. | Funabashi M, Grove TL, Wang M, Varma Y, McFadden ME, Brown LC, Guo C, Higginbottom S, Almo SC, Fischbach MA | Nature | 32555455 | Nature | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32555455 |
| Endogenous retroviruses promote homeostatic and inflammatory responses to the microbiota. | Lima-Junior DS, Krishnamurthy SR, Bouladoux N, Collins N, Han SJ, Chen EY, Constantinides MG, Link VM, Lim AI, Enamorado M, Cataisson C, Gil L, Rao I, Farley TK, Koroleva G, Attig J, Yuspa SH, Fischbach MA, Kassiotis G, Belkaid Y | Cell | 34166614 | Cell | 2021 Jul 8 | https://www.ncbi.nlm.nih.gov/pubmed/34166614 |
| Microbial Transplantation With Human Gut Commensals Containing CutC Is Sufficient to Transmit Enhanced Platelet Reactivity and Thrombosis Potential. | Skye SM, Zhu W, Romano KA, Guo CJ, Wang Z, Jia X, Kirsop J, Haag B, Lang JM, DiDonato JA, Tang WHW, Lusis AJ, Rey FE, Fischbach MA, Hazen SL | Circulation research | 30359185 | Circ Res | 2018 Oct 26 | https://www.ncbi.nlm.nih.gov/pubmed/30359185 |
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| A Cutibacterium acnes antibiotic modulates human skin microbiota composition in hair follicles. | Claesen J, Spagnolo JB, Ramos SF, Kurita KL, Byrd AL, Aksenov AA, Melnik AV, Wong WR, Wang S, Hernandez RD, Donia MS, Dorrestein PC, Kong HH, Segre JA, Linington RG, Fischbach MA, Lemon KP | Science translational medicine | 33208503 | Sci Transl Med | 2020 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/33208503 |
| Bile acids profile, histopathological indices and genetic variants for non-alcoholic fatty liver disease progression. | Nimer N, Choucair I, Wang Z, Nemet I, Li L, Gukasyan J, Weeks TL, Alkhouri N, Zein N, Tang WHW, Fischbach MA, Brown JM, Allayee H, Dasarathy S, Gogonea V, Hazen SL | Metabolism: clinical and experimental | 33275980 | Metabolism | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33275980 |
| The Biosynthesis of Lipooligosaccharide from Bacteroides thetaiotaomicron. | Jacobson AN, Choudhury BP, Fischbach MA | mBio | 29535205 | mBio | 2018 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/29535205 |
| Depletion of microbiome-derived molecules in the host using Clostridium genetics. | Guo CJ, Allen BM, Hiam KJ, Dodd D, Van Treuren W, Higginbottom S, Nagashima K, Fischer CR, Sonnenburg JL, Spitzer MH, Fischbach MA | Science (New York, N.Y.) | 31831639 | Science | 2019 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/31831639 |
| Mapping the Genetic Landscape of Human Cells. | Horlbeck MA, Xu A, Wang M, Bennett NK, Park CY, Bogdanoff D, Adamson B, Chow ED, Kampmann M, Peterson TR, Nakamura K, Fischbach MA, Weissman JS, Gilbert LA | Cell | 30033366 | Cell | 2018 Aug 9 | https://www.ncbi.nlm.nih.gov/pubmed/30033366 |
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| Comprehensive Clinical and Genetic Analyses of Circulating Bile Acids and Their Associations With Diabetes and Its Indices. | Choucair I, Mallela DP, Hilser JR, Hartiala JA, Nemet I, Gogonea V, Li L, Lusis AJ, Fischbach MA, Tang WHW, Allayee H, Hazen SL | Diabetes | 38701355 | Diabetes | 2024 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/38701355 |
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| gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota. | Pascal Andreu V, Augustijn HE, Chen L, Zhernakova A, Fu J, Fischbach MA, Dodd D, Medema MH | Nature biotechnology | 36782070 | Nat Biotechnol | 2023 Oct | https://www.ncbi.nlm.nih.gov/pubmed/36782070 |
| Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome. | Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA | Cell | 37352836 | Cell | 2023 Jun 22 | https://www.ncbi.nlm.nih.gov/pubmed/37352836 |
| Skin microbiota-host interactions. | Chen YE, Fischbach MA, Belkaid Y | Nature | 29364286 | Nature | 2018 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/29364286 |
| Contextual control of skin immunity and inflammation by Corynebacterium. | Ridaura VK, Bouladoux N, Claesen J, Chen YE, Byrd AL, Constantinides MG, Merrill ED, Tamoutounour S, Fischbach MA, Belkaid Y | The Journal of experimental medicine | 29382696 | J Exp Med | 2018 Mar 5 | https://www.ncbi.nlm.nih.gov/pubmed/29382696 |
| The Lymphatic System: Integral Roles in Immunity. | Randolph GJ, Ivanov S, Zinselmeyer BH, Scallan JP | Annual review of immunology | 27860528 | Annu Rev Immunol | 2017 Apr 26 | https://www.ncbi.nlm.nih.gov/pubmed/27860528 |
| The Lymphatic Vasculature in the 21(st) Century: Novel Functional Roles in Homeostasis and Disease. | Oliver G, Kipnis J, Randolph GJ, Harvey NL | Cell | 32707093 | Cell | 2020 Jul 23 | https://www.ncbi.nlm.nih.gov/pubmed/32707093 |
| Myeloid-specific Asxl2 deletion limits diet-induced obesity by regulating energy expenditure. | Zou W, Rohatgi N, Brestoff JR, Moley JR, Li Y, Williams JW, Alippe Y, Pan H, Pietka TA, Mbalaviele G, Newberry EP, Davidson NO, Dey A, Shoghi KI, Head RD, Wickline SA, Randolph GJ, Abumrad NA, Teitelbaum SL | The Journal of clinical investigation | 32310225 | J Clin Invest | 2020 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/32310225 |
| A Polecat's View of Patrolling Monocytes. | Williams JW, Randolph GJ, Zinselmeyer BH | Circulation research | 28546349 | Circ Res | 2017 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/28546349 |
| LYVE1+ macrophages of murine peritoneal mesothelium promote omentum-independent ovarian tumor growth. | Zhang N, Kim SH, Gainullina A, Erlich EC, Onufer EJ, Kim J, Czepielewski RS, Helmink BA, Dominguez JR, Saunders BT, Ding J, Williams JW, Jiang JX, Segal BH, Zinselmeyer BH, Randolph GJ, Kim KW | The Journal of experimental medicine | 34714329 | J Exp Med | 2021 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/34714329 |
| MHC II+ resident peritoneal and pleural macrophages rely on IRF4 for development from circulating monocytes. | Kim KW, Williams JW, Wang YT, Ivanov S, Gilfillan S, Colonna M, Virgin HW, Gautier EL, Randolph GJ | The Journal of experimental medicine | 27551152 | J Exp Med | 2016 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/27551152 |
| Liver injury after small bowel resection is prevented in obesity-resistant 129S1/SvImJ mice. | Onufer EJ, Han YH, Courtney C, Steinberger A, Tecos M, Sutton S, Sescleifer A, Ou J, Sanguinetti Czepielewski R, Randolph GJ, Warner BW | American journal of physiology. Gastrointestinal and liver physiology | 33729834 | Am J Physiol Gastrointest Liver Physiol | 2021 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/33729834 |
| Limited proliferation capacity of aortic intima resident macrophages requires monocyte recruitment for atherosclerotic plaque progression. | Williams JW, Zaitsev K, Kim KW, Ivanov S, Saunders BT, Schrank PR, Kim K, Elvington A, Kim SH, Tucker CG, Wohltmann M, Fife BT, Epelman S, Artyomov MN, Lavine KJ, Zinselmeyer BH, Choi JH, Randolph GJ | Nature immunology | 32895539 | Nat Immunol | 2020 Oct | https://www.ncbi.nlm.nih.gov/pubmed/32895539 |
| Transcriptome Analysis Reveals Nonfoamy Rather Than Foamy Plaque Macrophages Are Proinflammatory in Atherosclerotic Murine Models. | Kim K, Shim D, Lee JS, Zaitsev K, Williams JW, Kim KW, Jang MY, Seok Jang H, Yun TJ, Lee SH, Yoon WK, Prat A, Seidah NG, Choi J, Lee SP, Yoon SH, Nam JW, Seong JK, Oh GT, Randolph GJ, Artyomov MN, Cheong C, Choi JH | Circulation research | 30359200 | Circ Res | 2018 Oct 26 | https://www.ncbi.nlm.nih.gov/pubmed/30359200 |
| Mafb lineage tracing to distinguish macrophages from other immune lineages reveals dual identity of Langerhans cells. | Wu X, Briseño CG, Durai V, Albring JC, Haldar M, Bagadia P, Kim KW, Randolph GJ, Murphy TL, Murphy KM | The Journal of experimental medicine | 27810926 | J Exp Med | 2016 Nov 14 | https://www.ncbi.nlm.nih.gov/pubmed/27810926 |
| Tissue-Resident Macrophages in Pancreatic Ductal Adenocarcinoma Originate from Embryonic Hematopoiesis and Promote Tumor Progression. | Zhu Y, Herndon JM, Sojka DK, Kim KW, Knolhoff BL, Zuo C, Cullinan DR, Luo J, Bearden AR, Lavine KJ, Yokoyama WM, Hawkins WG, Fields RC, Randolph GJ, DeNardo DG | Immunity | 28813661 | Immunity | 2017 Aug 15 | https://www.ncbi.nlm.nih.gov/pubmed/28813661 |
| Lymphatic network remodeling after small bowel resection. | Onufer EJ, Czepielewski R, Seiler KM, Erlich E, Courtney CM, Bustos A, Randolph GJ, Warner BW | Journal of pediatric surgery | 30879758 | J Pediatr Surg | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30879758 |
| Cholesterol Accumulation in Dendritic Cells Links the Inflammasome to Acquired Immunity. | Westerterp M, Gautier EL, Ganda A, Molusky MM, Wang W, Fotakis P, Wang N, Randolph GJ, D'Agati VD, Yvan-Charvet L, Tall AR | Cell metabolism | 28479366 | Cell Metab | 2017 Jun 6 | https://www.ncbi.nlm.nih.gov/pubmed/28479366 |
| Microbiota-Dependent Sequelae of Acute Infection Compromise Tissue-Specific Immunity. | Fonseca DM, Hand TW, Han SJ, Gerner MY, Glatman Zaretsky A, Byrd AL, Harrison OJ, Ortiz AM, Quinones M, Trinchieri G, Brenchley JM, Brodsky IE, Germain RN, Randolph GJ, Belkaid Y | Cell | 26451485 | Cell | 2015 Oct 8 | https://www.ncbi.nlm.nih.gov/pubmed/26451485 |
| CCR7 and IRF4-dependent dendritic cells regulate lymphatic collecting vessel permeability. | Ivanov S, Scallan JP, Kim KW, Werth K, Johnson MW, Saunders BT, Wang PL, Kuan EL, Straub AC, Ouhachi M, Weinstein EG, Williams JW, Briseño C, Colonna M, Isakson BE, Gautier EL, Förster R, Davis MJ, Zinselmeyer BH, Randolph GJ | The Journal of clinical investigation | 26999610 | J Clin Invest | 2016 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/26999610 |
| Ileitis-associated tertiary lymphoid organs arise at lymphatic valves and impede mesenteric lymph flow in response to tumor necrosis factor. | Czepielewski RS, Erlich EC, Onufer EJ, Young S, Saunders BT, Han YH, Wohltmann M, Wang PL, Kim KW, Kumar S, Hsieh CS, Scallan JP, Yang Y, Zinselmeyer BH, Davis MJ, Randolph GJ | Immunity | 34788601 | Immunity | 2021 Dec 14 | https://www.ncbi.nlm.nih.gov/pubmed/34788601 |
| Postprandial Chylomicron Output and Transport Through Intestinal Lymphatics Are Not Impaired in Active Crohn's Disease. | Huang LH, Deepak P, Ciorba MA, Mittendorfer B, Patterson BW, Randolph GJ | Gastroenterology | 32681923 | Gastroenterology | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/32681923 |
| Expression of factor V by resident macrophages boosts host defense in the peritoneal cavity. | Zhang N, Czepielewski RS, Jarjour NN, Erlich EC, Esaulova E, Saunders BT, Grover SP, Cleuren AC, Broze GJ, Edelson BT, Mackman N, Zinselmeyer BH, Randolph GJ | The Journal of experimental medicine | 31048328 | J Exp Med | 2019 Jun 3 | https://www.ncbi.nlm.nih.gov/pubmed/31048328 |
| Cytokine Circuits in Cardiovascular Disease. | Williams JW, Huang LH, Randolph GJ | Immunity | 30995508 | Immunity | 2019 Apr 16 | https://www.ncbi.nlm.nih.gov/pubmed/30995508 |
| Interleukin-17 Drives Interstitial Entrapment of Tissue Lipoproteins in Experimental Psoriasis. | Huang LH, Zinselmeyer BH, Chang CH, Saunders BT, Elvington A, Baba O, Broekelmann TJ, Qi L, Rueve JS, Swartz MA, Kim BS, Mecham RP, Wiig H, Thomas MJ, Sorci-Thomas MG, Randolph GJ | Cell metabolism | 30415924 | Cell Metab | 2019 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/30415924 |
| Myeloid cells pave the way for lymphatic system development and maintenance. | Ivanov S, Randolph GJ | Pflugers Archiv : European journal of physiology | 28220247 | Pflugers Arch | 2017 Apr | https://www.ncbi.nlm.nih.gov/pubmed/28220247 |
| CD36 deficiency impairs the small intestinal barrier and induces subclinical inflammation in mice. | Cifarelli V, Ivanov S, Xie Y, Son NH, Saunders BT, Pietka TA, Shew TM, Yoshino J, Sundaresan S, Davidson NO, Goldberg IJ, Gelman AE, Zinselmeyer BH, Randolph GJ, Abumrad NA | Cellular and molecular gastroenterology and hepatology | 28066800 | Cell Mol Gastroenterol Hepatol | 2017 Jan | https://www.ncbi.nlm.nih.gov/pubmed/28066800 |
| Lymphoid Aggregates Remodel Lymphatic Collecting Vessels that Serve Mesenteric Lymph Nodes in Crohn Disease. | Randolph GJ, Bala S, Rahier JF, Johnson MW, Wang PL, Nalbantoglu I, Dubuquoy L, Chau A, Pariente B, Kartheuser A, Zinselmeyer BH, Colombel JF | The American journal of pathology | 27746181 | Am J Pathol | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27746181 |
| Macrophage Biology, Classification, and Phenotype in Cardiovascular Disease: JACC Macrophage in CVD Series (Part 1). | Williams JW, Giannarelli C, Rahman A, Randolph GJ, Kovacic JC | Journal of the American College of Cardiology | 30360826 | J Am Coll Cardiol | 2018 Oct 30 | https://www.ncbi.nlm.nih.gov/pubmed/30360826 |
| B Cell-Mediated Antigen Presentation through MHC Class II Is Dispensable for Atherosclerosis Progression. | Williams JW, Elvington A, Kessler S, Wohltmann M, Wu GF, Randolph GJ | ImmunoHorizons | 31356175 | Immunohorizons | 2019 Jan 21 | https://www.ncbi.nlm.nih.gov/pubmed/31356175 |
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| Enhancing untargeted metabolomics using metadata-based source annotation. | Gauglitz JM, West KA, Bittremieux W, Williams CL, Weldon KC, Panitchpakdi M, Di Ottavio F, Aceves CM, Brown E, Sikora NC, Jarmusch AK, Martino C, Tripathi A, Meehan MJ, Dorrestein K, Shaffer JP, Coras R, Vargas F, Goldasich LD, Schwartz T, Bryant M, Humphrey G, Johnson AJ, Spengler K, Belda-Ferre P, Diaz E, McDonald D, Zhu Q, Elijah EO, Wang M, Marotz C, Sprecher KE, Vargas-Robles D, Withrow D, Ackermann G, Herrera L, Bradford BJ, Marques LMM, Amaral JG, Silva RM, Veras FP, Cunha TM, Oliveira RDR, Louzada-Junior P, Mills RH, Piotrowski PK, Servetas SL, Da Silva SM, Jones CM, Lin NJ, Lippa KA, Jackson SA, Daouk RK, Galasko D, Dulai PS, Kalashnikova TI, Wittenberg C, Terkeltaub R, Doty MM, Kim JH, Rhee KE, Beauchamp-Walters J, Wright KP Jr, Dominguez-Bello MG, Manary M, Oliveira MF, Boland BS, Lopes NP, Guma M, Swafford AD, Dutton RJ, Knight R, Dorrestein PC | Nature biotechnology | 35798960 | Nat Biotechnol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35798960 |
| Global chemical effects of the microbiome include new bile-acid conjugations. | Quinn RA, Melnik AV, Vrbanac A, Fu T, Patras KA, Christy MP, Bodai Z, Belda-Ferre P, Tripathi A, Chung LK, Downes M, Welch RD, Quinn M, Humphrey G, Panitchpakdi M, Weldon KC, Aksenov A, da Silva R, Avila-Pacheco J, Clish C, Bae S, Mallick H, Franzosa EA, Lloyd-Price J, Bussell R, Thron T, Nelson AT, Wang M, Leszczynski E, Vargas F, Gauglitz JM, Meehan MJ, Gentry E, Arthur TD, Komor AC, Poulsen O, Boland BS, Chang JT, Sandborn WJ, Lim M, Garg N, Lumeng JC, Xavier RJ, Kazmierczak BI, Jain R, Egan M, Rhee KE, Ferguson D, Raffatellu M, Vlamakis H, Haddad GG, Siegel D, Huttenhower C, Mazmanian SK, Evans RM, Nizet V, Knight R, Dorrestein PC | Nature | 32103176 | Nature | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/32103176 |
| Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity. | Martino C, Kellman BP, Sandoval DR, Clausen TM, Marotz CA, Song SJ, Wandro S, Zaramela LS, Salido Benítez RA, Zhu Q, Armingol E, Vázquez-Baeza Y, McDonald D, Sorrentino JT, Taylor B, Belda-Ferre P, Liang C, Zhang Y, Schifanella L, Klatt NR, Havulinna AS, Jousilahti P, Huang S, Haiminen N, Parida L, Kim HC, Swafford AD, Zengler K, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Esko JD, Lewis NE, Knight R | bioRxiv : the preprint server for biology | 32839779 | bioRxiv | 2020 Aug 18 | https://www.ncbi.nlm.nih.gov/pubmed/32839779 |
| Context-aware dimensionality reduction deconvolutes gut microbial community dynamics. | Martino C, Shenhav L, Marotz CA, Armstrong G, McDonald D, Vázquez-Baeza Y, Morton JT, Jiang L, Dominguez-Bello MG, Swafford AD, Halperin E, Knight R | Nature biotechnology | 32868914 | Nat Biotechnol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32868914 |
| Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. | Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, Nothias-Esposito M, Dührkop K, Böcker S, Kim HW, Aksenov AA, Bittremieux W, Minich JJ, Marotz C, Bryant MM, Sanders K, Schwartz T, Humphrey G, Vásquez-Baeza Y, Tripathi A, Parida L, Carrieri AP, Beck KL, Das P, González A, McDonald D, Ladau J, Karst SM, Albertsen M, Ackermann G, DeReus J, Thomas T, Petras D, Shade A, Stegen J, Song SJ, Metz TO, Swafford AD, Dorrestein PC, Jansson JK, Gilbert JA, Knight R, Earth Microbiome Project 500 (EMP500) Consortium | Nature microbiology | 36443458 | Nat Microbiol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36443458 |
| The Gut Microbial Bile Acid Modulation and Its Relevance to Digestive Health and Diseases. | Fogelson KA, Dorrestein PC, Zarrinpar A, Knight R | Gastroenterology | 36841488 | Gastroenterology | 2023 Jun | https://www.ncbi.nlm.nih.gov/pubmed/36841488 |
| Robustness of cancer microbiome signals over a broad range of methodological variation. | Sepich-Poore GD, McDonald D, Kopylova E, Guccione C, Zhu Q, Austin G, Carpenter C, Fraraccio S, Wandro S, Kosciolek T, Janssen S, Metcalf JL, Song SJ, Kanbar J, Miller-Montgomery S, Heaton R, Mckay R, Patel SP, Swafford AD, Korem T, Knight R | Oncogene | 38396294 | Oncogene | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38396294 |
| TEMPTED: time-informed dimensionality reduction for longitudinal microbiome studies. | Shi P, Martino C, Han R, Janssen S, Buck G, Serrano M, Owzar K, Knight R, Shenhav L, Zhang AR | Genome biology | 39696594 | Genome Biol | 2024 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/39696594 |
| SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx. | Martino C, Kellman BP, Sandoval DR, Clausen TM, Cooper R, Benjdia A, Soualmia F, Clark AE, Garretson AF, Marotz CA, Song SJ, Wandro S, Zaramela LS, Salido RA, Zhu Q, Armingol E, Vázquez-Baeza Y, McDonald D, Sorrentino JT, Taylor B, Belda-Ferre P, Das P, Ali F, Liang C, Zhang Y, Schifanella L, Covizzi A, Lai A, Riva A, Basting C, Broedlow CA, Havulinna AS, Jousilahti P, Estaki M, Kosciolek T, Kuplicki R, Victor TA, Paulus MP, Savage KE, Benbow JL, Spielfogel ES, Anderson CAM, Martinez ME, Lacey JV Jr, Huang S, Haiminen N, Parida L, Kim H-C, Gilbert JA, Sweeney DA, Allard SM, Swafford AD, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Zengler K, Klatt NR, Hasty J, Berteau O, Carlin AF, Esko JD, Lewis NE, Knight R | mBio | 39998226 | mBio | 2025 Apr 9 | https://www.ncbi.nlm.nih.gov/pubmed/39998226 |
| The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns. | Salido RA, Zhao HN, McDonald D, Mannochio-Russo H, Zuffa S, Oles RE, Aron AT, El Abiead Y, Farmer S, González A, Martino C, Mohanty I, Parker CW, Patel L, Portal Gomes PW, Schmid R, Schwartz T, Zhu J, Barratt MR, Rubins KH, Chu H, Karouia F, Venkateswaran K, Dorrestein PC, Knight R | Cell | 40020666 | Cell | 2025 Apr 3 | https://www.ncbi.nlm.nih.gov/pubmed/40020666 |
| Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes. | Brennan C, Shaffer JP, Belda-Ferre P, Mohanty I, Weng Y, Cantrell K, Ackermann G, Allaband C, Bryant M, Farmer S, González A, McDonald D, Martino C, Meehan MJ, Rahman G, Salido RA, Schwartz T, Song SJ, Tribelhorn C, Tubb HM, Dorrestein PC, Knight R | Microbiology spectrum | 41070991 | Microbiol Spectr | 2025 Nov 4 | https://www.ncbi.nlm.nih.gov/pubmed/41070991 |
| Calculating fast differential genome coverages among metagenomic sources using micov. | Weng Y, Guccione C, McDonald D, Oles R, Devkota S, Kopylova E, Sepich-Poore GD, Salido RA, Din MO, Song SJ, Curtius K, Chu H, Bartko A, Hasty J, Knight R | Communications biology | 41266796 | Commun Biol | 2025 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/41266796 |
| Metatranscriptomics Uncover Diurnal Functional Shifts in Bacterial Transgenes with Profound Metabolic Effects. | Ramos SF, Siguenza N, Zhong W, Mohanty I, Lingaraju A, Richter RA, Karthikeyan S, Lukowski AL, Zhu Q, Nunes WDG, Zemlin J, Xu ZZ, Hasty J, Dorrestein PC, Panda S, Knight R, Zarrinpar A | Cell host & microbe | 40777923 | Cell Host Microbe | 2025 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/40777923 |
| Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. | Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, Armstrong G, Vázquez-Baeza Y, Yu J, Kuczynski J, Sepich-Poore GD, Swafford AD, Das P, Shaffer JP, Lejzerowicz F, Belda-Ferre P, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Kim HC, Jain M, Inouye M, Gilbert JA, Knight R | mSystems | 35369727 | mSystems | 2022 Apr 26 | https://www.ncbi.nlm.nih.gov/pubmed/35369727 |
| Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype. | Martino C, McDonald D, Cantrell K, Dilmore AH, Vázquez-Baeza Y, Shenhav L, Shaffer JP, Rahman G, Armstrong G, Allaband C, Song SJ, Knight R | mSystems | 35477286 | mSystems | 2022 Jun 28 | https://www.ncbi.nlm.nih.gov/pubmed/35477286 |
| Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome. | Huang S, Jiang S, Huo D, Allaband C, Estaki M, Cantu V, Belda-Ferre P, Vázquez-Baeza Y, Zhu Q, Ma C, Li C, Zarrinpar A, Liu YY, Knight R, Zhang J | Microbiome | 34193290 | Microbiome | 2021 Jun 30 | https://www.ncbi.nlm.nih.gov/pubmed/34193290 |
| Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References. | Hakim D, Wandro S, Zengler K, Zaramela LS, Nowinski B, Swafford A, Zhu Q, Song SJ, Gonzalez A, McDonald D, Knight R | mSystems | 36073806 | mSystems | 2022 Oct 26 | https://www.ncbi.nlm.nih.gov/pubmed/36073806 |
| A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data. | Zuffa S, Schmid R, Bauermeister A, Gomes PWP, Caraballo-Rodriguez AM, Abiead YE, Aron AT, Gentry EC, Zemlin J, Meehan MJ, Avalon NE, Cichewicz RH, Buzun E, Terrazas MC, Hsu CY, Oles R, Ayala AV, Zhao J, Chu H, Kuijpers MCM, Jackrel SL, Tugizimana F, Nephali LP, Dubery IA, Madala NE, Moreira EA, Costa-Lotufo LV, Lopes NP, Rezende-Teixeira P, Jimenez PC, Rimal B, Patterson AD, Traxler MF, de Cassia Pessotti R, Alvarado-Villalobos D, Tamayo-Castillo G, Chaverri P, Escudero-Leyva E, Quiros-Guerrero LM, Bory AJ, Joubert J, Rutz A, Wolfender JL, Allard PM, Sichert A, Pontrelli S, Pullman BS, Bandeira N, Gerwick WH, Gindro K, Massana-Codina J, Wagner BC, Forchhammer K, Petras D, Aiosa N, Garg N, Liebeke M, Bourceau P, Kang KB, Gadhavi H, de Carvalho LPS, Dos Santos MS, Pérez-Lorente AI, Molina-Santiago C, Romero D, Franke R, Brönstrup M, de León AVP, Pope PB, Rosa SL, Barbera G, Roager HM, Laursen MF, Hammerle F, Siewert B, Peintner U, Licona-Cassani C, Rodriguez-Orduña L, Rampler E, Hildebrand F, Koellensperger G, Schoeny H, Hohenwallner K, Panzenboeck L, Gregor R, O'Neill EC, Roxborough ET, Odoi J, Bale NJ, Ding S, Sinninghe Damsté JS, Guan XL, Cui JJ, Ju KS, Silva DB, Silva FMR, da Silva GF, Koolen HHF, Grundmann C, Clement JA, Mohimani H, Broders K, McPhail KL, Ober-Singleton SE, Rath CM, McDonald D, Knight R, Wang M, Dorrestein PC | Research square | 37577622 | Res Sq | 2023 Aug 3 | https://www.ncbi.nlm.nih.gov/pubmed/37577622 |
| Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution. | Brennan C, Salido RA, Belda-Ferre P, Bryant M, Cowart C, Tiu MD, González A, McDonald D, Tribelhorn C, Zarrinpar A, Knight R | mSystems | 37350611 | mSystems | 2023 Aug 31 | https://www.ncbi.nlm.nih.gov/pubmed/37350611 |
| Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data. | Guccione C, Patel L, Tomofuji Y, McDonald D, Gonzalez A, Sepich-Poore GD, Sonehara K, Zakeri M, Chen Y, Dilmore AH, Damle N, Baranzini SE, Nakatsuji T, Gallo RL, Langmead B, Okada Y, Curtius K, Knight R | Research square | 39502785 | Res Sq | 2024 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/39502785 |
| Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data. | Guccione C, Patel L, Tomofuji Y, McDonald D, Gonzalez A, Sepich-Poore GD, Sonehara K, Zakeri M, Chen Y, Dilmore AH, Damle N, Baranzini SE, Hightower G, Nakatsuji T, Gallo RL, Langmead B, Okada Y, Curtius K, Knight R | Nature communications | 39827261 | Nat Commun | 2025 Jan 18 | https://www.ncbi.nlm.nih.gov/pubmed/39827261 |
| Temporal nutrition analysis associates dietary regularity and quality with gut microbiome diversity: insights from the Food & You digital cohort. | Singh R, McDonald D, Hernandez AR, Song SJ, Bartko A, Knight R, Salathé M | Nature communications | 41028733 | Nat Commun | 2025 Sep 30 | https://www.ncbi.nlm.nih.gov/pubmed/41028733 |
| SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp. | Cantú VJ, Salido RA, Huang S, Rahman G, Tsai R, Valentine H, Magallanes CG, Aigner S, Baer NA, Barber T, Belda-Ferre P, Betty M, Bryant M, Casas Maya M, Castro-Martínez A, Chacón M, Cheung W, Crescini ES, De Hoff P, Eisner E, Farmer S, Hakim A, Kohn L, Lastrella AL, Lawrence ES, Morgan SC, Ngo TT, Nouri A, Plascencia A, Ruiz CA, Sathe S, Seaver P, Shwartz T, Smoot EW, Ostrander RT, Valles T, Yeo GW, Laurent LC, Fielding-Miller R, Knight R | mSystems | 35575492 | mSystems | 2022 Jun 28 | https://www.ncbi.nlm.nih.gov/pubmed/35575492 |
| Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding. | Song SJ, Wang J, Martino C, Jiang L, Thompson WK, Shenhav L, McDonald D, Marotz C, Harris PR, Hernandez CD, Henderson N, Ackley E, Nardella D, Gillihan C, Montacuti V, Schweizer W, Jay M, Combellick J, Sun H, Garcia-Mantrana I, Gil Raga F, Collado MC, Rivera-Viñas JI, Campos-Rivera M, Ruiz-Calderon JF, Knight R, Dominguez-Bello MG | Med (New York, N.Y.) | 35590169 | Med | 2021 Aug 13 | https://www.ncbi.nlm.nih.gov/pubmed/35590169 |
| Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase. | Sfiligoi I, Armstrong G, Gonzalez A, McDonald D, Knight R | mSystems | 35638356 | mSystems | 2022 Jun 28 | https://www.ncbi.nlm.nih.gov/pubmed/35638356 |
| Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data. | Armstrong G, Rahman G, Martino C, McDonald D, Gonzalez A, Mishne G, Knight R | Frontiers in bioinformatics | 36304280 | Front Bioinform | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36304280 |
| Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution. | Sepich-Poore GD, Guccione C, Laplane L, Pradeu T, Curtius K, Knight R | BioEssays : news and reviews in molecular, cellular and developmental biology | 35253252 | Bioessays | 2022 May | https://www.ncbi.nlm.nih.gov/pubmed/35253252 |
| Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment. | Marotz C, Belda-Ferre P, Ali F, Das P, Huang S, Cantrell K, Jiang L, Martino C, Diner RE, Rahman G, McDonald D, Armstrong G, Kodera S, Donato S, Ecklu-Mensah G, Gottel N, Garcia MCS, Chiang LY, Salido RA, Shaffer JP, Bryant M, Sanders K, Humphrey G, Ackermann G, Haiminen N, Beck KL, Kim HC, Carrieri AP, Parida L, Vázquez-Baeza Y, Torriani FJ, Knight R, Gilbert JA, Sweeney DA, Allard SM | medRxiv : the preprint server for health sciences | 33236030 | medRxiv | 2020 Nov 22 | https://www.ncbi.nlm.nih.gov/pubmed/33236030 |
| Host variables confound gut microbiota studies of human disease. | Vujkovic-Cvijin I, Sklar J, Jiang L, Natarajan L, Knight R, Belkaid Y | Nature | 33149306 | Nature | 2020 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33149306 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | Shaffer JP, Marotz C, Belda-Ferre P, Martino C, Wandro S, Estaki M, Salido RA, Carpenter CS, Zaramela LS, Minich JJ, Bryant M, Sanders K, Fraraccio S, Ackermann G, Humphrey G, Swafford AD, Miller-Montgomery S, Knight R | BioTechniques | 33512248 | Biotechniques | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33512248 |
| microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. | Zuffa S, Schmid R, Bauermeister A, P Gomes PW, Caraballo-Rodriguez AM, El Abiead Y, Aron AT, Gentry EC, Zemlin J, Meehan MJ, Avalon NE, Cichewicz RH, Buzun E, Terrazas MC, Hsu CY, Oles R, Ayala AV, Zhao J, Chu H, Kuijpers MCM, Jackrel SL, Tugizimana F, Nephali LP, Dubery IA, Madala NE, Moreira EA, Costa-Lotufo LV, Lopes NP, Rezende-Teixeira P, Jimenez PC, Rimal B, Patterson AD, Traxler MF, Pessotti RC, Alvarado-Villalobos D, Tamayo-Castillo G, Chaverri P, Escudero-Leyva E, Quiros-Guerrero LM, Bory AJ, Joubert J, Rutz A, Wolfender JL, Allard PM, Sichert A, Pontrelli S, Pullman BS, Bandeira N, Gerwick WH, Gindro K, Massana-Codina J, Wagner BC, Forchhammer K, Petras D, Aiosa N, Garg N, Liebeke M, Bourceau P, Kang KB, Gadhavi H, de Carvalho LPS, Silva Dos Santos M, Pérez-Lorente AI, Molina-Santiago C, Romero D, Franke R, Brönstrup M, Vera Ponce de León A, Pope PB, La Rosa SL, La Barbera G, Roager HM, Laursen MF, Hammerle F, Siewert B, Peintner U, Licona-Cassani C, Rodriguez-Orduña L, Rampler E, Hildebrand F, Koellensperger G, Schoeny H, Hohenwallner K, Panzenboeck L, Gregor R, O'Neill EC, Roxborough ET, Odoi J, Bale NJ, Ding S, Sinninghe Damsté JS, Guan XL, Cui JJ, Ju KS, Silva DB, Silva FMR, da Silva GF, Koolen HHF, Grundmann C, Clement JA, Mohimani H, Broders K, McPhail KL, Ober-Singleton SE, Rath CM, McDonald D, Knight R, Wang M, Dorrestein PC | Nature microbiology | 38316926 | Nat Microbiol | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/38316926 |
| The changing metabolic landscape of bile acids - keys to metabolism and immune regulation. | Mohanty I, Allaband C, Mannochio-Russo H, El Abiead Y, Hagey LR, Knight R, Dorrestein PC | Nature reviews. Gastroenterology & hepatology | 38575682 | Nat Rev Gastroenterol Hepatol | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38575682 |
| Bayesian multivariate sparse functional principal components analysis with application to longitudinal microbiome multiomics data. | Jiang L, Elrod C, Kim JJ, Swafford AD, Knight R, Thompson WK | The annals of applied statistics | 40969773 | Ann Appl Stat | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/40969773 |
| Generation of accurate, expandable phylogenomic trees with uDance. | Balaban M, Jiang Y, Zhu Q, McDonald D, Knight R, Mirarab S | Nature biotechnology | 37500914 | Nat Biotechnol | 2024 May | https://www.ncbi.nlm.nih.gov/pubmed/37500914 |
| Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression. | Fu T, Huan T, Rahman G, Zhi H, Xu Z, Oh TG, Guo J, Coulter S, Tripathi A, Martino C, McCarville JL, Zhu Q, Cayabyab F, Low B, He M, Xing S, Vargas F, Yu RT, Atkins A, Liddle C, Ayres J, Raffatellu M, Dorrestein PC, Downes M, Knight R, Evans RM | Cell reports | 37611587 | Cell Rep | 2023 Aug 29 | https://www.ncbi.nlm.nih.gov/pubmed/37611587 |
| Improving microbial phylogeny with citizen science within a mass-market video game. | Sarrazin-Gendron R, Ghasemloo Gheidari P, Butyaev A, Keding T, Cai E, Zheng J, Mutalova R, Mounthanyvong J, Zhu Y, Nazarova E, Drogaris C, Erhart K, Borderlands Science Development Team, Borderlands Science players, Brouillette A, Richard G, Pitchford R, Caisse S, Blanchette M, McDonald D, Knight R, Szantner A, Waldispühl J | Nature biotechnology | 38622344 | Nat Biotechnol | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/38622344 |
| Annexin-V stabilizes membrane defects by inducing lipid phase transition. | Lin YC, Chipot C, Scheuring S | Nature communications | 31932647 | Nat Commun | 2020 Jan 13 | https://www.ncbi.nlm.nih.gov/pubmed/31932647 |
| Chemically induced protein cage assembly with programmable opening and cargo release. | Stupka I, Azuma Y, Biela AP, Imamura M, Scheuring S, Pyza E, Woźnicka O, Maskell DP, Heddle JG | Science advances | 34985943 | Sci Adv | 2022 Jan 7 | https://www.ncbi.nlm.nih.gov/pubmed/34985943 |
| Real time dynamics of Gating-Related conformational changes in CorA. | Rangl M, Schmandt N, Perozo E, Scheuring S | eLife | 31774394 | Elife | 2019 Nov 27 | https://www.ncbi.nlm.nih.gov/pubmed/31774394 |
| Structural dynamics and permeability of the TRPV3 pentamer. | Lansky S, Wang Z, Clarke OB, Chipot C, Scheuring S | Nature communications | 40374654 | Nat Commun | 2025 May 15 | https://www.ncbi.nlm.nih.gov/pubmed/40374654 |
| A structural biology compatible file format for atomic force microscopy. | Jiang Y, Wang Z, Scheuring S | Nature communications | 39955301 | Nat Commun | 2025 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/39955301 |
| Localization atomic force microscopy. | Heath GR, Kots E, Robertson JL, Lansky S, Khelashvili G, Weinstein H, Scheuring S | Nature | 34135520 | Nature | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/34135520 |
| Forces and energetics of the canonical tetrameric cation channel gating. | Scheuring S | Proceedings of the National Academy of Sciences of the United States of America | 37399394 | Proc Natl Acad Sci U S A | 2023 Jul 11 | https://www.ncbi.nlm.nih.gov/pubmed/37399394 |
| A concerted ATPase cycle of the protein transporter AAA-ATPase Bcs1. | Pan Y, Zhan J, Jiang Y, Xia D, Scheuring S | Nature communications | 37821516 | Nat Commun | 2023 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/37821516 |
| The cyanobacterial protein VIPP1 forms ESCRT-III-like structures on lipid bilayers. | Pan S, Gries K, Engel BD, Schroda M, Haselwandter CA, Scheuring S | Nature structural & molecular biology | 39060677 | Nat Struct Mol Biol | 2025 Mar | https://www.ncbi.nlm.nih.gov/pubmed/39060677 |
| High-speed atomic force microscopy to study pore-forming proteins. | Jiao F, Ruan Y, Scheuring S | Methods in enzymology | 33712187 | Methods Enzymol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33712187 |
| Snf7 spirals sense and alter membrane curvature. | Jukic N, Perrino AP, Humbert F, Roux A, Scheuring S | Nature communications | 35449207 | Nat Commun | 2022 Apr 21 | https://www.ncbi.nlm.nih.gov/pubmed/35449207 |
| Single molecule kinetics of bacteriorhodopsin by HS-AFM. | Perrino AP, Miyagi A, Scheuring S | Nature communications | 34893646 | Nat Commun | 2021 Dec 10 | https://www.ncbi.nlm.nih.gov/pubmed/34893646 |
| Nanodissected elastically loaded clathrin lattices relax to increased curvature. | Tagiltsev G, Haselwandter CA, Scheuring S | Science advances | 34389539 | Sci Adv | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34389539 |
| Structural dynamics of channels and transporters by high-speed atomic force microscopy. | Heath GR, Lin YC, Matin TR, Scheuring S | Methods in enzymology | 34059280 | Methods Enzymol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34059280 |
| Nanoreporter of an Enzymatic Suicide Inactivation Pathway. | Yaari Z, Cheung JM, Baker HA, Frederiksen RS, Jena PV, Horoszko CP, Jiao F, Scheuring S, Luo M, Heller DA | Nano letters | 33119310 | Nano Lett | 2020 Nov 11 | https://www.ncbi.nlm.nih.gov/pubmed/33119310 |
| Force-induced conformational changes in PIEZO1. | Lin YC, Guo YR, Miyagi A, Levring J, MacKinnon R, Scheuring S | Nature | 31435018 | Nature | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31435018 |
| Advances in high-speed atomic force microscopy (HS-AFM) reveal dynamics of transmembrane channels and transporters. | Heath GR, Scheuring S | Current opinion in structural biology | 30878714 | Curr Opin Struct Biol | 2019 Aug | https://www.ncbi.nlm.nih.gov/pubmed/30878714 |
| Discrimination between cyclic nucleotides in a cyclic nucleotide-gated ion channel. | Pan Y, Pohjolainen E, Schmidpeter PAM, Vaiana AC, Nimigean CM, Grubmüller H, Scheuring S | Nature structural & molecular biology | 36973509 | Nat Struct Mol Biol | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36973509 |
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| Transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states. | Walter LD, Orton JL, Ntekas I, Fong EHH, Maymi VI, Rudd BD, De Vlaminck I, Elisseeff JH, Cosgrove BD | Nature aging | 39578558 | Nat Aging | 2024 Dec | https://www.ncbi.nlm.nih.gov/pubmed/39578558 |
| Autologous Protein Solution processing alters lymphoid and myeloid cell populations and modulates gene expression dependent on cell type. | Peña AN, Sommerfeld SD, Anderson AE, Han J, Maestas DR Jr, Mejias JC, Woodell-May J, King W, Ganguly S, Elisseeff JH | Arthritis research & therapy | 36096945 | Arthritis Res Ther | 2022 Sep 12 | https://www.ncbi.nlm.nih.gov/pubmed/36096945 |
| Computational reconstruction of the signalling networks surrounding implanted biomaterials from single-cell transcriptomics. | Cherry C, Maestas DR, Han J, Andorko JI, Cahan P, Fertig EJ, Garmire LX, Elisseeff JH | Nature biomedical engineering | 34341534 | Nat Biomed Eng | 2021 Oct | https://www.ncbi.nlm.nih.gov/pubmed/34341534 |
| Single-cell transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states associated with senescence. | Walter LD, Orton JL, Hannah Fong EH, Maymi VI, Rudd BD, Elisseeff JH, Cosgrove BD | bioRxiv : the preprint server for biology | 37292698 | bioRxiv | 2023 May 26 | https://www.ncbi.nlm.nih.gov/pubmed/37292698 |
| Sirolimus-eluting airway stent reduces profibrotic Th17 cells and inhibits laryngotracheal stenosis. | Motz KM, Lina IA, Samad I, Murphy MK, Duvvuri M, Davis RJ, Gelbard A, Chung L, Chan-Li Y, Collins S, Powell JD, Elisseeff JH, Horton MR, Hillel AT | JCI insight | 37159282 | JCI Insight | 2023 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/37159282 |
| Design of cell-type-specific hyperstable IL-4 mimetics via modular de novo scaffolds. | Yang H, Ulge UY, Quijano-Rubio A, Bernstein ZJ, Maestas DR, Chun JH, Wang W, Lin JX, Jude KM, Singh S, Orcutt-Jahns BT, Li P, Mou J, Chung L, Kuo YH, Ali YH, Meyer AS, Grayson WL, Heller NM, Garcia KC, Leonard WJ, Silva DA, Elisseeff JH, Baker D, Spangler JB | Nature chemical biology | 37024727 | Nat Chem Biol | 2023 Sep | https://www.ncbi.nlm.nih.gov/pubmed/37024727 |
| Interleukin-36γ-producing macrophages drive IL-17-mediated fibrosis. | Sommerfeld SD, Cherry C, Schwab RM, Chung L, Maestas DR Jr, Laffont P, Stein JE, Tam A, Ganguly S, Housseau F, Taube JM, Pardoll DM, Cahan P, Elisseeff JH | Science immunology | 31604843 | Sci Immunol | 2019 Oct 11 | https://www.ncbi.nlm.nih.gov/pubmed/31604843 |
| Transfer learning in a biomaterial fibrosis model identifies in vivo senescence heterogeneity and contributions to vascularization and matrix production across species and diverse pathologies. | Cherry C, Andorko JI, Krishnan K, Mejías JC, Nguyen HH, Stivers KB, Gray-Gaillard EF, Ruta A, Han J, Hamada N, Hamada M, Sturmlechner I, Trewartha S, Michel JH, Davenport Huyer L, Wolf MT, Tam AJ, Peña AN, Keerthivasan S, Le Saux CJ, Fertig EJ, Baker DJ, Housseau F, van Deursen JM, Pardoll DM, Elisseeff JH | GeroScience | 37079217 | Geroscience | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37079217 |
| Biomaterials-based immunomodulation enhances survival of murine vascularized composite allografts. | Sommerfeld SD, Zhou X, Mejías JC, Oh BC, Maestas DR Jr, Furtmüller GJ, Laffont PA, Elisseeff JH, Brandacher G | Biomaterials science | 37129566 | Biomater Sci | 2023 May 30 | https://www.ncbi.nlm.nih.gov/pubmed/37129566 |
| Immunoengineering Biomaterials for Musculoskeletal Tissue Repair across Lifespan. | Han J, Rindone AN, Elisseeff JH | Advanced materials (Deerfield Beach, Fla.) | 38416061 | Adv Mater | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/38416061 |
| Murine gut microbiota dysbiosis via enteric infection modulates the foreign body response to a distal biomaterial implant. | Yang B, Rutkowski N, Ruta A, Gray-Gaillard E, Maestas DR Jr, Kelly SH, Krishnan K, Wu X, Wu S, Chen A, Mejías JC, Hooks JST, Vanderzee I, Mensah P, Celik N, Eric M, Abraham P, Tam A, Housseau F, Pardoll DM, Sears CL, Elisseeff JH | Proceedings of the National Academy of Sciences of the United States of America | 40354538 | Proc Natl Acad Sci U S A | 2025 May 20 | https://www.ncbi.nlm.nih.gov/pubmed/40354538 |
| Differential cell signaling testing for cell-cell communication inference from single-cell data by dominoSignal. | Mitchell JT, Stapleton O, Krishnan K, Nagaraj S, Lvovs D, Cherry C, Poissonnier A, Horton W, Adey A, Rao V, Huff A, Zimmerman JW, Kagohara LT, Zaidi N, Coussens LM, Jaffee EM, Elisseeff JH, Fertig EJ | bioRxiv : the preprint server for biology | 40654902 | bioRxiv | 2025 May 3 | https://www.ncbi.nlm.nih.gov/pubmed/40654902 |
| Interleukin 17 and senescent cells regulate the foreign body response to synthetic material implants in mice and humans. | Chung L, Maestas DR Jr, Lebid A, Mageau A, Rosson GD, Wu X, Wolf MT, Tam AJ, Vanderzee I, Wang X, Andorko JI, Zhang H, Narain R, Sadtler K, Fan H, Čiháková D, Le Saux CJ, Housseau F, Pardoll DM, Elisseeff JH | Science translational medicine | 32295900 | Sci Transl Med | 2020 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/32295900 |
| Biomaterials direct functional B cell response in a material-specific manner. | Moore EM, Maestas DR Jr, Cherry CC, Garcia JA, Comeau HY, Davenport Huyer L, Kelly SH, Peña AN, Blosser RL, Rosson GD, Elisseeff JH | Science advances | 34851674 | Sci Adv | 2021 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/34851674 |
| The Immune System and Its Contribution to Variability in Regenerative Medicine. | Moore EM, Maestas DR Jr, Comeau HY, Elisseeff JH | Tissue engineering. Part B, Reviews | 32635878 | Tissue Eng Part B Rev | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/32635878 |
| IL-17 and immunologically induced senescence regulate response to injury in osteoarthritis. | Faust HJ, Zhang H, Han J, Wolf MT, Jeon OH, Sadtler K, Peña AN, Chung L, Maestas DR Jr, Tam AJ, Pardoll DM, Campisi J, Housseau F, Zhou D, Bingham CO 3rd, Elisseeff JH | The Journal of clinical investigation | 32955487 | J Clin Invest | 2020 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/32955487 |
| Immune and Genome Engineering as the Future of Transplantable Tissue. | Elisseeff J, Badylak SF, Boeke JD | The New England journal of medicine | 34936741 | N Engl J Med | 2021 Dec 23 | https://www.ncbi.nlm.nih.gov/pubmed/34936741 |
| Age-associated Senescent - T Cell Signaling Promotes Type 3 Immunity that Inhibits the Biomaterial Regenerative Response. | Han J, Cherry C, Mejías JC, Krishnan K, Ruta A, Maestas DR Jr, Peña AN, Nguyen HH, Nagaraj S, Yang B, Gray-Gaillard EF, Rutkowski N, Browne M, Tam AJ, Fertig EJ, Housseau F, Ganguly S, Moore EM, Pardoll DM, Elisseeff JH | Advanced materials (Deerfield Beach, Fla.) | 38087458 | Adv Mater | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/38087458 |
| Emergence of the Stem Cell Secretome in Regenerative Engineering. | Daneshmandi L, Shah S, Jafari T, Bhattacharjee M, Momah D, Saveh-Shemshaki N, Lo KW, Laurencin CT | Trends in biotechnology | 32622558 | Trends Biotechnol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/32622558 |
| Racial Profiling Is a Public Health and Health Disparities Issue. | Laurencin CT, Walker JM | Journal of racial and ethnic health disparities | 32253746 | J Racial Ethn Health Disparities | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32253746 |
| Development of Tripolymeric Triaxial Electrospun Fibrous Matrices for Dual Drug Delivery Applications. | Nagiah N, Murdock CJ, Bhattacharjee M, Nair L, Laurencin CT | Scientific reports | 31953439 | Sci Rep | 2020 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/31953439 |
| Ultra-low binder content 3D printed calcium phosphate graphene scaffolds as resorbable, osteoinductive matrices that support bone formation in vivo. | Daneshmandi L, Holt BD, Arnold AM, Laurencin CT, Sydlik SA | Scientific reports | 35484292 | Sci Rep | 2022 Apr 28 | https://www.ncbi.nlm.nih.gov/pubmed/35484292 |
| Muscle degeneration in chronic massive rotator cuff tears of the shoulder: Addressing the real problem using a graphene matrix. | Saveh Shemshaki N, Kan HM, Barajaa M, Otsuka T, Lebaschi A, Mishra N, Nair LS, Laurencin CT | Proceedings of the National Academy of Sciences of the United States of America | 35939692 | Proc Natl Acad Sci U S A | 2022 Aug 16 | https://www.ncbi.nlm.nih.gov/pubmed/35939692 |
| Regenerative Engineering Animal Models for Knee Osteoarthritis. | Esdaille CJ, Ude CC, Laurencin CT | Regenerative engineering and translational medicine | 35958163 | Regen Eng Transl Med | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35958163 |
| Animal models of osteoarthritis: classification, update, and measurement of outcomes. | Kuyinu EL, Narayanan G, Nair LS, Laurencin CT | Journal of orthopaedic surgery and research | 26837951 | J Orthop Surg Res | 2016 Feb 2 | https://www.ncbi.nlm.nih.gov/pubmed/26837951 |
| Poly (lactic acid)-based biomaterials for orthopaedic regenerative engineering. | Narayanan G, Vernekar VN, Kuyinu EL, Laurencin CT | Advanced drug delivery reviews | 27125191 | Adv Drug Deliv Rev | 2016 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/27125191 |
| An American Crisis: the Lack of Black Men in Medicine. | Laurencin CT, Murray M | Journal of racial and ethnic health disparities | 28534304 | J Racial Ethn Health Disparities | 2017 Jun | https://www.ncbi.nlm.nih.gov/pubmed/28534304 |
| REGENERATIVE ENGINEERING: APPROACHES TO LIMB REGENERATION AND OTHER GRAND CHALLENGES. | Laurencin CT, Nair LS | Regenerative engineering and translational medicine | 26985451 | Regen Eng Transl Med | 2015 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/26985451 |
| Regenerative Engineering of Cartilage Using Adipose-Derived Stem Cells. | Kasir R, Vernekar VN, Laurencin CT | Regenerative engineering and translational medicine | 26998511 | Regen Eng Transl Med | 2015 Dec 1 | https://www.ncbi.nlm.nih.gov/pubmed/26998511 |
| Growth factor delivery strategies for rotator cuff repair and regeneration. | Prabhath A, Vernekar VN, Sanchez E, Laurencin CT | International journal of pharmaceutics | 29317260 | Int J Pharm | 2018 Jun 15 | https://www.ncbi.nlm.nih.gov/pubmed/29317260 |
| The Treatment of Muscle Atrophy after Rotator Cuff Tears Using Electroconductive Nanofibrous Matrices. | Tang X, Shemshaki NS, Vernekar VN, Prabhath A, Kuyinu E, Kan HM, Barajaa M, Khan Y, Laurencin CT | Regenerative engineering and translational medicine | 33816776 | Regen Eng Transl Med | 2021 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33816776 |
| Kinetic degradation and biocompatibility evaluation of polycaprolactone-based biologics delivery matrices for regenerative engineering of the rotator cuff. | Prabhath A, Vernekar VN, Vasu V, Badon M, Avochinou JE, Asandei AD, Kumbar SG, Weber E, Laurencin CT | Journal of biomedical materials research. Part A | 33974735 | J Biomed Mater Res A | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33974735 |
| Preparation and characterization of amnion hydrogel and its synergistic effect with adipose derived stem cells towards IL1β activated chondrocytes. | Bhattacharjee M, Ivirico JLE, Kan HM, Bordett R, Pandey R, Otsuka T, Nair LS, Laurencin CT | Scientific reports | 33127964 | Sci Rep | 2020 Oct 30 | https://www.ncbi.nlm.nih.gov/pubmed/33127964 |
| Mechanically superior matrices promote osteointegration and regeneration of anterior cruciate ligament tissue in rabbits. | Mengsteab PY, Otsuka T, McClinton A, Shemshaki NS, Shah S, Kan HM, Obopilwe E, Vella AT, Nair LS, Laurencin CT | Proceedings of the National Academy of Sciences of the United States of America | 33144508 | Proc Natl Acad Sci U S A | 2020 Nov 17 | https://www.ncbi.nlm.nih.gov/pubmed/33144508 |
| Biomimetic electroconductive nanofibrous matrices for skeletal muscle regenerative engineering. | Tang X, Saveh-Shemshaki N, Kan HM, Khan Y, Laurencin CT | Regenerative engineering and translational medicine | 33426269 | Regen Eng Transl Med | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33426269 |
| Regenerative Engineering for Knee Osteoarthritis Treatment: Biomaterials and Cell-Based Technologies. | Escobar Ivirico JL, Bhattacharjee M, Kuyinu E, Nair LS, Laurencin CT | Engineering (Beijing, China) | 35392109 | Engineering (Beijing) | 2017 Feb | https://www.ncbi.nlm.nih.gov/pubmed/35392109 |
| Ligament Regenerative Engineering: Braiding Scalable and Tunable Bioengineered Ligaments Using a Bench-Top Braiding Machine. | Mengsteab PY, Freeman J, Barajaa MA, Nair LS, Laurencin CT | Regenerative engineering and translational medicine | 35005216 | Regen Eng Transl Med | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35005216 |
| Harnessing cAMP signaling in musculoskeletal regenerative engineering. | Ifegwu OC, Awale G, Rajpura K, Lo KW, Laurencin CT | Drug discovery today | 28359841 | Drug Discov Today | 2017 Jul | https://www.ncbi.nlm.nih.gov/pubmed/28359841 |
| Generational Biodegradable and Regenerative Polyphosphazene Polymers and their Blends with Poly (lactic-co-glycolic acid). | Ogueri KS, Allcock HR, Laurencin CT | Progress in polymer science | 31551636 | Prog Polym Sci | 2019 Nov | https://www.ncbi.nlm.nih.gov/pubmed/31551636 |
| Biodegradable Polyphosphazene-Based Blends for Regenerative Engineering. | Ogueri KS, Escobar Ivirico JL, Nair LS, Allcock HR, Laurencin CT | Regenerative engineering and translational medicine | 28596987 | Regen Eng Transl Med | 2017 Mar | https://www.ncbi.nlm.nih.gov/pubmed/28596987 |
| Engineered stem cell niche matrices for rotator cuff tendon regenerative engineering. | Peach MS, Ramos DM, James R, Morozowich NL, Mazzocca AD, Doty SB, Allcock HR, Kumbar SG, Laurencin CT | PloS one | 28369135 | PLoS One | 2017 | https://www.ncbi.nlm.nih.gov/pubmed/28369135 |
| The Axolotl Limb Regeneration Model as a Discovery Tool for Engineering the Stem Cell Niche. | Seyedhassantehrani N, Otsuka T, Singh S, Gardiner DM | Current stem cell reports | 29230380 | Curr Stem Cell Rep | 2017 Sep | https://www.ncbi.nlm.nih.gov/pubmed/29230380 |
| Fabrication and characterization of mechanically competent 3D printed polycaprolactone-reduced graphene oxide scaffolds. | Seyedsalehi A, Daneshmandi L, Barajaa M, Riordan J, Laurencin CT | Scientific reports | 33335152 | Sci Rep | 2020 Dec 17 | https://www.ncbi.nlm.nih.gov/pubmed/33335152 |
| Bioinspired Scaffold Designs for Regenerating Musculoskeletal Tissue Interfaces. | Barajaa MA, Nair LS, Laurencin CT | Regenerative engineering and translational medicine | 33344758 | Regen Eng Transl Med | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33344758 |
| Stromal Vascular Fraction for Osteoarthritis of the Knee Regenerative Engineering. | Ude CC, Shah S, Ogueri KS, Nair LS, Laurencin CT | Regenerative engineering and translational medicine | 35958164 | Regen Eng Transl Med | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35958164 |
| Nanofiber Technology for Regenerative Engineering. | Ogueri KS, Laurencin CT | ACS nano | 32678581 | ACS Nano | 2020 Aug 25 | https://www.ncbi.nlm.nih.gov/pubmed/32678581 |
| Synthesis, Physicochemical Analysis, and Side Group Optimization of Degradable Dipeptide-Based Polyphosphazenes as Potential Regenerative Biomaterials. | Ogueri KS, Escobar Ivirico JL, Li Z, Blumenfield RH, Allcock HR, Laurencin CT | ACS applied polymer materials | 32699835 | ACS Appl Polym Mater | 2019 Jun 14 | https://www.ncbi.nlm.nih.gov/pubmed/32699835 |
| Polyphosphazene polymers: The next generation of biomaterials for regenerative engineering and therapeutic drug delivery. | Ogueri KS, Ogueri KS, Allcock HR, Laurencin CT | Journal of vacuum science and technology. B, Nanotechnology & microelectronics : materials, processing, measurement, & phenomena : JVST B | 32309041 | J Vac Sci Technol B Nanotechnol Microelectron | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32309041 |
| Enhancing the Surface Properties of a Bioengineered Anterior Cruciate Ligament Matrix for Use with Point-of-Care Stem Cell Therapy. | Yu X, Mengsteab PY, Narayanan G, Nair LS, Laurencin CT | Engineering (Beijing, China) | 34136308 | Engineering (Beijing) | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34136308 |
| Injectable amnion hydrogel-mediated delivery of adipose-derived stem cells for osteoarthritis treatment. | Bhattacharjee M, Escobar Ivirico JL, Kan HM, Shah S, Otsuka T, Bordett R, Barajaa M, Nagiah N, Pandey R, Nair LS, Laurencin CT | Proceedings of the National Academy of Sciences of the United States of America | 35046053 | Proc Natl Acad Sci U S A | 2022 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/35046053 |
| The Role of Nanomaterials and Biological Agents on Rotator Cuff Regeneration. | Washington KS, Shemshaki NS, Laurencin CT | Regenerative engineering and translational medicine | 35005215 | Regen Eng Transl Med | 2021 Dec | https://www.ncbi.nlm.nih.gov/pubmed/35005215 |
| In Vivo Evaluation of the Regenerative Capability of Glycylglycine Ethyl Ester-Substituted Polyphosphazene and Poly(lactic-co-glycolic acid) Blends: A Rabbit Critical-Sized Bone Defect Model. | Ogueri KS, Ogueri KS, McClinton A, Kan HM, Ude CC, Barajaa MA, Allcock HR, Laurencin CT | ACS biomaterials science & engineering | 33792283 | ACS Biomater Sci Eng | 2021 Apr 12 | https://www.ncbi.nlm.nih.gov/pubmed/33792283 |
| Regenerative engineering: a review of recent advances and future directions. | Esdaille CJ, Washington KS, Laurencin CT | Regenerative medicine | 34030463 | Regen Med | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/34030463 |
| Regenerative Engineering of the Rotator Cuff of the Shoulder. | Narayanan G, Nair LS, Laurencin CT | ACS biomaterials science & engineering | 33418763 | ACS Biomater Sci Eng | 2018 Mar 12 | https://www.ncbi.nlm.nih.gov/pubmed/33418763 |
| Addressing Justified Vaccine Hesitancy in the Black Community. | Laurencin CT | Journal of racial and ethnic health disparities | 33783755 | J Racial Ethn Health Disparities | 2021 Jun | https://www.ncbi.nlm.nih.gov/pubmed/33783755 |
| Biomedical applications of polyphosphazenes. | Ogueri KS, Ogueri KS, Ude CC, Allcock HR, Laurencin CT | Medical devices & sensors | 33889811 | Med Devices Sens | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33889811 |
| The past, present and future of ligament regenerative engineering. | Mengsteab PY, Nair LS, Laurencin CT | Regenerative medicine | 27879170 | Regen Med | 2016 Dec | https://www.ncbi.nlm.nih.gov/pubmed/27879170 |
| Identification of Heparan-Sulfate Rich Cells in the Loose Connective Tissues of the Axolotl (Ambystoma mexicanum) with the Potential to Mediate Growth Factor Signaling during Regeneration. | Otsuka T, Phan AQ, Laurencin CT, Esko JD, Bryant SV, Gardiner DM | Regenerative engineering and translational medicine | 33748405 | Regen Eng Transl Med | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33748405 |
| Skeletal Muscle Regenerative Engineering. | Tang X, Daneshmandi L, Awale G, Nair LS, Laurencin CT | Regenerative engineering and translational medicine | 33778155 | Regen Eng Transl Med | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/33778155 |
| Graphene-Based Biomaterials for Bone Regenerative Engineering: A Comprehensive Review of the Field and Considerations Regarding Biocompatibility and Biodegradation. | Daneshmandi L, Barajaa M, Tahmasbi Rad A, Sydlik SA, Laurencin CT | Advanced healthcare materials | 33103370 | Adv Healthc Mater | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33103370 |
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| Regenerative Cell-Based Therapies: Cutting Edge, Bleeding Edge, and Off the Edge. | Laurencin CT, McClinton A | Regenerative engineering and translational medicine | 33344756 | Regen Eng Transl Med | 2020 Mar | https://www.ncbi.nlm.nih.gov/pubmed/33344756 |
| Nail matrix regenerative engineering: in vitro evaluation of poly(lactide-co-glycolide)/gelatin fibrous substrates. | Montgomery AB, McClinton A, Nair L, Laurencin CT | Journal of biomedical materials research. Part A | 31981298 | J Biomed Mater Res A | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/31981298 |
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| Efficacy of a Novel Electroconductive Matrix To Treat Muscle Atrophy and Fat Accumulation in Chronic Massive Rotator Cuff Tears of the Shoulder. | Shemshaki NS, Kan HM, Barajaa MA, Lebaschi A, Otsuka T, Mishra N, Nair LS, Laurencin CT | ACS biomaterials science & engineering | 37769114 | ACS Biomater Sci Eng | 2023 Oct 9 | https://www.ncbi.nlm.nih.gov/pubmed/37769114 |
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| The Mechanism of Metallosis After Total Hip Arthroplasty. | Ude CC, Esdaille CJ, Ogueri KS, Ho-Man K, Laurencin SJ, Nair LS, Laurencin CT | Regenerative engineering and translational medicine | 35530571 | Regen Eng Transl Med | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35530571 |
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| A potent pan-sarbecovirus neutralizing antibody resilient to epitope diversification. | Rosen LE, Tortorici MA, De Marco A, Pinto D, Foreman WB, Taylor AL, Park YJ, Bohan D, Rietz T, Errico JM, Hauser K, Dang HV, Chartron JW, Giurdanella M, Cusumano G, Saliba C, Zatta F, Sprouse KR, Addetia A, Zepeda SK, Brown J, Lee J, Dellota E Jr, Rajesh A, Noack J, Tao Q, DaCosta Y, Tsu B, Acosta R, Subramanian S, de Melo GD, Kergoat L, Zhang I, Liu Z, Guarino B, Schmid MA, Schnell G, Miller JL, Lempp FA, Czudnochowski N, Cameroni E, Whelan SPJ, Bourhy H, Purcell LA, Benigni F, di Iulio J, Pizzuto MS, Lanzavecchia A, Telenti A, Snell G, Corti D, Veesler D, Starr TN | Cell | 39383863 | Cell | 2024 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/39383863 |
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| The computationally designed TRI2-2 miniprotein inhibitor protects against multiple SARS-CoV-2 Omicron variants. | Lee J, Case JB, Park YJ, Ravichandran R, Asarnow D, Tortorici MA, Brown JT, Sanapala S, Carter L, Baker D, Diamond MS, Veesler D | Communications biology | 41519898 | Commun Biol | 2026 Jan 10 | https://www.ncbi.nlm.nih.gov/pubmed/41519898 |
| Structural changes in the SARS-CoV-2 spike E406W mutant escaping a clinical monoclonal antibody cocktail. | Addetia A, Park YJ, Starr T, Greaney AJ, Sprouse KR, Bowen JE, Tiles SW, Van Voorhis WC, Bloom JD, Corti D, Walls AC, Veesler D | Cell reports | 37300832 | Cell Rep | 2023 Jun 27 | https://www.ncbi.nlm.nih.gov/pubmed/37300832 |
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| Delta breakthrough infections elicit potent, broad and durable neutralizing antibody responses. | Walls AC, Sprouse KR, Joshi A, Bowen JE, Franko N, Navarro MJ, Stewart C, McCallum M, Goecker EA, Degli-Angeli EJ, Logue J, Greninger A, Chu H, Veesler D | bioRxiv : the preprint server for biology | 34931192 | bioRxiv | 2021 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/34931192 |
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| Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants. | McCallum M, Walls AC, Sprouse KR, Bowen JE, Rosen LE, Dang HV, De Marco A, Franko N, Tilles SW, Logue J, Miranda MC, Ahlrichs M, Carter L, Snell G, Pizzuto MS, Chu HY, Van Voorhis WC, Corti D, Veesler D | Science (New York, N.Y.) | 34751595 | Science | 2021 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/34751595 |
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| ACE2 utilization of HKU25 clade MERS-related coronaviruses with broad geographic distribution. | Liu C, Park YJ, Ma CB, Stuart C, Gen R, Sun YC, Yang X, Lin MY, Xiong Q, Si JY, Liu P, Veesler D, Yan H | Research square | 40162213 | Res Sq | 2025 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/40162213 |
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| Immunization with a self-assembling nanoparticle vaccine displaying EBV gH/gL protects humanized mice against lethal viral challenge. | Malhi H, Homad LJ, Wan YH, Poudel B, Fiala B, Borst AJ, Wang JY, Walkey C, Price J, Wall A, Singh S, Moodie Z, Carter L, Handa S, Correnti CE, Stoddard BL, Veesler D, Pancera M, Olson J, King NP, McGuire AT | Cell reports. Medicine | 35705092 | Cell Rep Med | 2022 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/35705092 |
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| Structure, receptor recognition, and antigenicity of the human coronavirus CCoV-HuPn-2018 spike glycoprotein. | Tortorici MA, Walls AC, Joshi A, Park YJ, Eguia RT, Miranda MC, Kepl E, Dosey A, Stevens-Ayers T, Boeckh MJ, Telenti A, Lanzavecchia A, King NP, Corti D, Bloom JD, Veesler D | Cell | 35700730 | Cell | 2022 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/35700730 |
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| Structural changes in the SARS-CoV-2 spike E406W mutant escaping a clinical monoclonal antibody cocktail. | Addetia A, Park YJ, Starr T, Greaney AJ, Sprouse KR, Bowen JE, Tiles SW, Van Voorhis WC, Bloom JD, Corti D, Walls AC, Veesler D | bioRxiv : the preprint server for biology | 35118471 | bioRxiv | 2022 Jan 25 | https://www.ncbi.nlm.nih.gov/pubmed/35118471 |
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| TMPRSS2 inhibitors with broad-spectrum efficacy against SARS-CoV-2 (JN.1) and influenza A (H1N1) viruses protect mice from influenza A infection. | Presley L, Pérez-Vargas J, Saintigny A, Villanueva I, Ho M, Fone J, Brinsden L, Kaushik N, Olver S, Thompson CAH, Bautista-Sánchez D, Ennis S, Chen M, McCallum M, Brown JT, Ferková S, Hetrick B, Veesler D, Leduc R, Niikura M, Boudreault PL, Warner B, Jean F | Emerging microbes & infections | 41612887 | Emerg Microbes Infect | 2026 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41612887 |
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| Designed miniproteins potently inhibit and protect against MERS-CoV. | Ragotte RJ, Tortorici MA, Catanzaro NJ, Addetia A, Coventry B, Froggatt HM, Lee J, Stewart C, Brown JT, Goreshnik I, Sims JN, Milles LF, Wicky BIM, Glögl M, Gerben S, Kang A, Bera AK, Sharkey W, Schäfer A, Harkema JR, Baric RS, Baker D, Veesler D | Cell reports | 40450691 | Cell Rep | 2025 Jun 24 | https://www.ncbi.nlm.nih.gov/pubmed/40450691 |
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| A stabilized MERS-CoV spike ferritin nanoparticle vaccine elicits robust and protective neutralizing antibody responses. | Powell AE, Caruso H, Park S, Chen JL, O'Rear J, Ferrer BJ, Stieh DJ, Weiss AM, Belnap DM, Walker A, Bruening A, Hartwig A, Sprouse KR, Addetia A, Alshukairi AN, Ahyong V, Dougherty CS, Veesler D, Bowen R, Ledgerwood JE, Kay MS, Weidenbacher PA, Palanski BA | Nature communications | 41644950 | Nat Commun | 2026 Feb 5 | https://www.ncbi.nlm.nih.gov/pubmed/41644950 |
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| Converting non-neutralizing SARS-CoV-2 antibodies into broad-spectrum inhibitors. | Weidenbacher PA, Waltari E, de Los Rios Kobara I, Bell BN, Morris MK, Cheng YC, Hanson C, Pak JE, Kim PS | Nature chemical biology | 36076082 | Nat Chem Biol | 2022 Nov | https://www.ncbi.nlm.nih.gov/pubmed/36076082 |
| Formulation development and comparability studies with an aluminum-salt adjuvanted SARS-CoV-2 Spike ferritin nanoparticle vaccine antigen produced from two different cell lines. | Kumru OS, Sanyal M, Friedland N, Hickey J, Joshi R, Weidenbacher P, Do J, Cheng YC, Kim PS, Joshi SB, Volkin DB | bioRxiv : the preprint server for biology | 37066156 | bioRxiv | 2023 Apr 4 | https://www.ncbi.nlm.nih.gov/pubmed/37066156 |
| HIV-1 prehairpin intermediate inhibitors show efficacy independent of neutralization tier. | Bell BN, Bruun TUJ, Friedland N, Kim PS | Proceedings of the National Academy of Sciences of the United States of America | 36795752 | Proc Natl Acad Sci U S A | 2023 Feb 21 | https://www.ncbi.nlm.nih.gov/pubmed/36795752 |
| Genome-Scale CRISPR Screening Reveals Host Factors Required for Ribosome Formation and Viral Replication. | Ohlson MB, Eitson JL, Wells AI, Kumar A, Jang S, Ni C, Xing C, Buszczak M, Schoggins JW | mBio | 36809113 | mBio | 2023 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/36809113 |
| Enhancing HIV-1 Neutralization by Increasing the Local Concentration of Membrane-Proximal External Region-Directed Broadly Neutralizing Antibodies. | Kim S, Filsinger Interrante MV, Kim PS | Journal of virology | 36541800 | J Virol | 2023 Jan 31 | https://www.ncbi.nlm.nih.gov/pubmed/36541800 |
| Decreased efficacy of a COVID-19 vaccine due to mutations present in early SARS-CoV-2 variants of concern. | Weidenbacher PA, Friedland N, Sanyal M, Morris MK, Do J, Hanson C, Kim PS | bioRxiv : the preprint server for biology | 37425802 | bioRxiv | 2023 Jun 29 | https://www.ncbi.nlm.nih.gov/pubmed/37425802 |
| Engineering a SARS-CoV-2 Vaccine Targeting the Receptor-Binding Domain Cryptic-Face via Immunofocusing. | Bruun TUJ, Do J, Weidenbacher PA, Utz A, Kim PS | ACS central science | 39463836 | ACS Cent Sci | 2024 Oct 23 | https://www.ncbi.nlm.nih.gov/pubmed/39463836 |
| A broad antibody with enhanced HIV-1 neutralization via bispecific antibody-mediated prepositioning. | Kim S, Radford CE, Xu D, Zhong J, Do J, Pham DM, Travisano KA, Filsinger Interrante MV, Bruun TUJ, Rezek V, Wilder B, Palomares M, Seaman MS, Kitchen SG, Bloom JD, Kim PS | Nature communications | 40383778 | Nat Commun | 2025 May 18 | https://www.ncbi.nlm.nih.gov/pubmed/40383778 |
| Utilizing Machine Learning to Improve Neutralization Potency of an HIV-1 Antibody Targeting the gp41 N-Heptad Repeat. | Filsinger Interrante MV, Tang S, Kim S, Shanker VR, Hie BL, Bruun TUJ, Wu W, Pak JE, Fernandez D, Kim PS | ACS chemical biology | 40540236 | ACS Chem Biol | 2025 Jul 18 | https://www.ncbi.nlm.nih.gov/pubmed/40540236 |
| Structure-guided stabilization improves the ability of the HIV-1 gp41 hydrophobic pocket to elicit neutralizing antibodies. | Bruun TUJ, Tang S, Erwin G, Deis L, Fernandez D, Kim PS | The Journal of biological chemistry | 36841484 | J Biol Chem | 2023 Apr | https://www.ncbi.nlm.nih.gov/pubmed/36841484 |
| Formulation development and comparability studies with an aluminum-salt adjuvanted SARS-CoV-2 spike ferritin nanoparticle vaccine antigen produced from two different cell lines. | Kumru OS, Sanyal M, Friedland N, Hickey JM, Joshi R, Weidenbacher P, Do J, Cheng YC, Kim PS, Joshi SB, Volkin DB | Vaccine | 37620203 | Vaccine | 2023 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/37620203 |
| A ferritin-based COVID-19 nanoparticle vaccine that elicits robust, durable, broad-spectrum neutralizing antisera in non-human primates. | Weidenbacher PA, Sanyal M, Friedland N, Tang S, Arunachalam PS, Hu M, Kumru OS, Morris MK, Fontenot J, Shirreff L, Do J, Cheng YC, Vasudevan G, Feinberg MB, Villinger FJ, Hanson C, Joshi SB, Volkin DB, Pulendran B, Kim PS | Nature communications | 37069151 | Nat Commun | 2023 Apr 17 | https://www.ncbi.nlm.nih.gov/pubmed/37069151 |
| Efficient evolution of human antibodies from general protein language models. | Hie BL, Shanker VR, Xu D, Bruun TUJ, Weidenbacher PA, Tang S, Wu W, Pak JE, Kim PS | Nature biotechnology | 37095349 | Nat Biotechnol | 2024 Feb | https://www.ncbi.nlm.nih.gov/pubmed/37095349 |
| Design of universal Ebola virus vaccine candidates via immunofocusing. | Xu D, Powell AE, Utz A, Sanyal M, Do J, Patten JJ, Moliva JI, Sullivan NJ, Davey RA, Kim PS | bioRxiv : the preprint server for biology | 37904982 | bioRxiv | 2023 Oct 17 | https://www.ncbi.nlm.nih.gov/pubmed/37904982 |
| Bringing immunofocusing into focus. | Musunuri S, Weidenbacher PAB, Kim PS | NPJ vaccines | 38195562 | NPJ Vaccines | 2024 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/38195562 |
| A ferritin-based COVID-19 nanoparticle vaccine that elicits robust, durable, broad-spectrum neutralizing antisera in non-human primates. | Weidenbacher PA, Sanyal M, Friedland N, Tang S, Arunachalam PS, Hu M, Kumru OS, Morris MK, Fontenot J, Shirreff L, Do J, Cheng YC, Vasudevan G, Feinberg MB, Villinger FJ, Hanson C, Joshi SB, Volkin DB, Pulendran B, Kim PS | bioRxiv : the preprint server for biology | 36597527 | bioRxiv | 2022 Dec 26 | https://www.ncbi.nlm.nih.gov/pubmed/36597527 |
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| Multimerization of Ebola GPΔmucin on protein nanoparticle vaccines has minimal effect on elicitation of neutralizing antibodies. | Powell AE, Xu D, Roth GA, Zhang K, Chiu W, Appel EA, Kim PS | Frontiers in immunology | 36091016 | Front Immunol | 2022 | https://www.ncbi.nlm.nih.gov/pubmed/36091016 |
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| Oriented Multivalent Display Drives Consistent Serum Immunodominance to the Ebola Virus Glycoprotein. | Zheng C, Rubio AA, Vasquez S, Pham D, Pan Z, Barnes CO, Kim PS | ACS central science | 41625225 | ACS Cent Sci | 2026 Jan 28 | https://www.ncbi.nlm.nih.gov/pubmed/41625225 |
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| Functional-genomic analysis reveals intraspecies diversification of antiviral receptor transporter proteins in Xenopus laevis. | Boys IN, Mar KB, Schoggins JW | PLoS genetics | 34014925 | PLoS Genet | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/34014925 |
| Overexpression screen of interferon-stimulated genes identifies RARRES3 as a restrictor of Toxoplasma gondii infection. | Rinkenberger N, Abrams ME, Matta SK, Schoggins JW, Alto NM, Sibley LD | eLife | 34871166 | Elife | 2021 Dec 6 | https://www.ncbi.nlm.nih.gov/pubmed/34871166 |
| IFIT1 is rapidly evolving and exhibits disparate antiviral activities across 11 mammalian orders. | McDougal MB, Boys IN, De Maria AM, Nakahara E, Schoggins JW | bioRxiv : the preprint server for biology | 38798375 | bioRxiv | 2025 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/38798375 |
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| TRIM7 inhibits enterovirus replication and promotes emergence of a viral variant with increased pathogenicity. | Fan W, Mar KB, Sari L, Gaszek IK, Cheng Q, Evers BM, Shelton JM, Wight-Carter M, Siegwart DJ, Lin MM, Schoggins JW | Cell | 34062120 | Cell | 2021 Jun 24 | https://www.ncbi.nlm.nih.gov/pubmed/34062120 |
| Shiftless inhibits flavivirus replication in vitro and is neuroprotective in a mouse model of Zika virus pathogenesis. | Hanners NW, Mar KB, Boys IN, Eitson JL, De La Cruz-Rivera PC, Richardson RB, Fan W, Wight-Carter M, Schoggins JW | Proceedings of the National Academy of Sciences of the United States of America | 34873063 | Proc Natl Acad Sci U S A | 2021 Dec 7 | https://www.ncbi.nlm.nih.gov/pubmed/34873063 |
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| LY6E is a pan-coronavirus restriction factor in the respiratory tract. | Mar KB, Wells AI, Caballero Van Dyke MC, Lopez AH, Eitson JL, Fan W, Hanners NW, Evers BM, Shelton JM, Schoggins JW | Nature microbiology | 37443277 | Nat Microbiol | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37443277 |
| TRIM32 inhibits Venezuelan Equine Encephalitis Virus Infection by targeting a late step in viral entry. | Xie Y, Cao J, Gan S, Xu L, Zhang D, Qian S, Xu F, Ding Q, Schoggins JW, Fan W | bioRxiv : the preprint server for biology | 38895352 | bioRxiv | 2024 Jun 4 | https://www.ncbi.nlm.nih.gov/pubmed/38895352 |
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| Structural analysis of RIG-I-like receptors reveals ancient rules of engagement between diverse RNA helicases and TRIM ubiquitin ligases. | Kato K, Ahmad S, Zhu Z, Young JM, Mu X, Park S, Malik HS, Hur S | Molecular cell | 33373584 | Mol Cell | 2021 Feb 4 | https://www.ncbi.nlm.nih.gov/pubmed/33373584 |
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| Conjugation's Toolkit: the Roles of Nonstructural Proteins in Bacterial Sex. | Cooke MB, Herman C | Journal of bacteriology | 36847532 | J Bacteriol | 2023 Mar 21 | https://www.ncbi.nlm.nih.gov/pubmed/36847532 |
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| Antigen discovery tools for adaptive immune receptor repertoire research. | Bousbaine D, Ploegh HL | Current opinion in systems biology | 33195881 | Curr Opin Syst Biol | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33195881 |
| MICA-specific nanobodies for diagnosis and immunotherapy of MICA(+) tumors. | Verhaar ER, Knoflook A, Pishesha N, Liu X, van Keizerswaard WJC, Wucherpfennig KW, Ploegh HL | Frontiers in immunology | 38550583 | Front Immunol | 2024 | https://www.ncbi.nlm.nih.gov/pubmed/38550583 |
| Nanobodies as non-invasive imaging tools. | Rashidian M, Ploegh H | Immuno-oncology technology | 35754459 | Immunooncol Technol | 2020 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35754459 |
| An armed anti-immunoglobulin light chain nanobody protects mice against influenza A and B infections. | Liu X, Balligand T, Carpenet C, Ploegh HL | Science immunology | 37352373 | Sci Immunol | 2023 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/37352373 |
| Induction of antigen-specific tolerance by nanobody-antigen adducts that target class-II major histocompatibility complexes. | Pishesha N, Harmand T, Smeding LY, Ma W, Ludwig LS, Janssen R, Islam A, Xie YJ, Fang T, McCaul N, Pinney W 3rd, Sugito HR, Rossotti MA, Gonzalez-Sapienza G, Ploegh HL | Nature biomedical engineering | 34127819 | Nat Biomed Eng | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/34127819 |
| A modular Uba1-nanobody fusion enables selective ubiquitin transfer to tagged E2 enzymes. | Wijne C, D'Amico F, Pérez Berrocal DA, Mulder MPC, Ploegh HL, Gan J | The Journal of biological chemistry | 41203132 | J Biol Chem | 2025 Dec | https://www.ncbi.nlm.nih.gov/pubmed/41203132 |
| Identification and characterization of nanobodies specific for the human ubiquitin-like ISG15 protein. | Gan J, Dabhade P, Wijne C, McKibben W, Draganov SD, Alrawili H, Sun ZJ, Houghton JW, Tate EW, Le Gall C, Suresh P, Pishesha N, Pinto-Fernández A, Schwartz TU, Ploegh HL | The Journal of biological chemistry | 40774387 | J Biol Chem | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40774387 |
| A monoclonal anti-hemagglutinin stem antibody modified with zanamivir protects against both influenza A and B viruses. | Liu X, Balligand T, Le Gall C, Ploegh HL | Proceedings of the National Academy of Sciences of the United States of America | 40193611 | Proc Natl Acad Sci U S A | 2025 Apr 15 | https://www.ncbi.nlm.nih.gov/pubmed/40193611 |
| A nanobody that binds to the backside of the ubiquitin conjugating enzyme Ube2G2 differentially affects interactions with its partner E3 Ligases. | Suresh P, Wijne C, Sun ZJ, Becht N, Sahay I, Pishesha N, Ploegh H | Communications biology | 40234692 | Commun Biol | 2025 Apr 16 | https://www.ncbi.nlm.nih.gov/pubmed/40234692 |
| Asparaginyl Ligase-Catalyzed One-Step Cell Surface Modification of Red Blood Cells. | Harmand TJ, Pishesha N, Rehm FBH, Ma W, Pinney WB, Xie YJ, Ploegh HL | ACS chemical biology | 34129316 | ACS Chem Biol | 2021 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/34129316 |
| A monoclonal antibody that recognizes a unique 13-residue epitope in the cytoplasmic tail of HLA-E. | Verhaar ER, Gan J, Buhl S, Li Z, Horowitz A, Ploegh HL | Molecular immunology | 38901180 | Mol Immunol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38901180 |
| Bi-specific antibody engagers for cancer immunotherapy. | Ploegh H, Liu X, Le Gall C, Alexander R, Borgman E, Balligand T | Research square | 39149504 | Res Sq | 2024 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/39149504 |
| Improved GPCR ligands from nanobody tethering. | Cheloha RW, Fischer FA, Woodham AW, Daley E, Suminski N, Gardella TJ, Ploegh HL | Nature communications | 32350260 | Nat Commun | 2020 Apr 29 | https://www.ncbi.nlm.nih.gov/pubmed/32350260 |
| Nanobodies in cancer. | Verhaar ER, Woodham AW, Ploegh HL | Seminars in immunology | 33272897 | Semin Immunol | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33272897 |
| USP16 is an ISG15 cross-reactive deubiquitinase that targets pro-ISG15 and ISGylated proteins involved in metabolism. | Gan J, Pinto-Fernández A, Flierman D, Akkermans JJLL, O'Brien DP, Greenwood H, Scott HC, Fritz G, Knobeloch KP, Neefjes J, van Dam H, Ovaa H, Ploegh HL, Kessler BM, Geurink PP, Sapmaz A | Proceedings of the National Academy of Sciences of the United States of America | 38055744 | Proc Natl Acad Sci U S A | 2023 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/38055744 |
| Surviving COVID-19: A disease tolerance perspective. | Ayres JS | Science advances | 32494691 | Sci Adv | 2020 May | https://www.ncbi.nlm.nih.gov/pubmed/32494691 |
| A metabolic handbook for the COVID-19 pandemic. | Ayres JS | Nature metabolism | 32694793 | Nat Metab | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32694793 |
| Cooperative defenses during enteropathogenic infection. | Troha K, Ayres JS | Current opinion in microbiology | 34847524 | Curr Opin Microbiol | 2022 Feb | https://www.ncbi.nlm.nih.gov/pubmed/34847524 |
| Immunometabolism of infections. | Ayres JS | Nature reviews. Immunology | 31892735 | Nat Rev Immunol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31892735 |
| Fluoxetine promotes immunometabolic defenses to mediate host-pathogen cooperation during sepsis. | Gallant RM, Snyder JM, Ayres JS | bioRxiv : the preprint server for biology | 38013994 | bioRxiv | 2023 Nov 18 | https://www.ncbi.nlm.nih.gov/pubmed/38013994 |
| Beyond tug-of-war: Iron metabolism in cooperative host-microbe interactions. | Chen GY, Ayres JS | PLoS pathogens | 32785251 | PLoS Pathog | 2020 Aug | https://www.ncbi.nlm.nih.gov/pubmed/32785251 |
| Age-dependent roles of cardiac remodeling in sepsis defense and pathogenesis. | Sanchez KK, McCarville JL, Stengel SJ, Snyder JM, Williams AE, Ayres JS | bioRxiv : the preprint server for biology | 36993409 | bioRxiv | 2023 Mar 15 | https://www.ncbi.nlm.nih.gov/pubmed/36993409 |
| Microbiota Metabolites in Health and Disease. | McCarville JL, Chen GY, Cuevas VD, Troha K, Ayres JS | Annual review of immunology | 32340573 | Annu Rev Immunol | 2020 Apr 26 | https://www.ncbi.nlm.nih.gov/pubmed/32340573 |
| The Biology of Physiological Health. | Ayres JS | Cell | 32302569 | Cell | 2020 Apr 16 | https://www.ncbi.nlm.nih.gov/pubmed/32302569 |
| Cooperation between physiological defenses and immune resistance produces asymptomatic carriage of a lethal bacterial pathogen. | Chen GY, Thorup NR, Miller AJ, Li YC, Ayres JS | bioRxiv : the preprint server for biology | 36711884 | bioRxiv | 2023 Feb 26 | https://www.ncbi.nlm.nih.gov/pubmed/36711884 |
| Pre-infection cerebral cortex structure predicts murine sepsis outcome. | Gallant RM, Alam S, Venkataraman K, McKenna BS, Khairy K, Ayres JS | PloS one | 40961093 | PLoS One | 2025 | https://www.ncbi.nlm.nih.gov/pubmed/40961093 |
| Disease tolerance and infection pathogenesis age-related tradeoffs in mice. | Sanchez KK, McCarville JL, Stengel SJ, Snyder JM, Williams AE, Ayres JS | Nature | 41535469 | Nature | 2026 Feb | https://www.ncbi.nlm.nih.gov/pubmed/41535469 |
| Metabolic Adaptations to Infections at the Organismal Level. | Troha K, Ayres JS | Trends in immunology | 31959515 | Trends Immunol | 2020 Feb | https://www.ncbi.nlm.nih.gov/pubmed/31959515 |
| Chronic Leptin Deficiency Improves Tolerance of Physiological Damage and Host-Pathogen Cooperation during Yersinia pseudotuberculosis Infection. | Sanchez KK, Troha K, Mu A, Redford SE, McCarville JL, Insenga A, Stengel S, Lee YM, Ayres JS | Infection and immunity | 35924898 | Infect Immun | 2022 Sep 15 | https://www.ncbi.nlm.nih.gov/pubmed/35924898 |
| Adipose triglyceride lipase mediates lipolysis and lipid mobilization in response to iron-mediated negative energy balance. | Romero AR, Mu A, Ayres JS | iScience | 35265813 | iScience | 2022 Mar 18 | https://www.ncbi.nlm.nih.gov/pubmed/35265813 |
| Cooperation between physiological defenses and immune resistance produces asymptomatic carriage of a lethal bacterial pathogen. | Chen GY, Thorup NR, Miller AJ, Li YC, Ayres JS | Science advances | 37352357 | Sci Adv | 2023 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/37352357 |
| CD4+ T cells regulate sickness-induced anorexia and fat wasting during a chronic parasitic infection. | Redford SE, Varanasi SK, Sanchez KK, Thorup NR, Ayres JS | Cell reports | 37490905 | Cell Rep | 2023 Aug 29 | https://www.ncbi.nlm.nih.gov/pubmed/37490905 |
| Fluoxetine promotes IL-10-dependent metabolic defenses to protect from sepsis-induced lethality. | Gallant RM, Sanchez KK, Joulia E, Snyder JM, Metallo CM, Ayres JS | Science advances | 39951524 | Sci Adv | 2025 Feb 14 | https://www.ncbi.nlm.nih.gov/pubmed/39951524 |
| Dietary methionine mitigates immune-mediated damage by enhancing renal clearance of cytokines. | Troha K, Kambhampati S, Insenga A, Metallo CM, Ayres JS | Cell metabolism | 41576934 | Cell Metab | 2026 Feb 3 | https://www.ncbi.nlm.nih.gov/pubmed/41576934 |
| Tunable dynamics of B cell selection in gut germinal centres. | Nowosad CR, Mesin L, Castro TBR, Wichmann C, Donaldson GP, Araki T, Schiepers A, Lockhart AAK, Bilate AM, Mucida D, Victora GD | Nature | 33116306 | Nature | 2020 Dec | https://www.ncbi.nlm.nih.gov/pubmed/33116306 |
| Universal recording of cell-cell contacts in vivo for interaction-based transcriptomics. | Nakandakari-Higa S, Canesso MCC, Walker S, Chudnovskiy A, Jacobsen JT, Bilanovic J, Parigi SM, Fiedorczuk K, Fuchs E, Bilate AM, Pasqual G, Mucida D, Pritykin Y, Victora GD | bioRxiv : the preprint server for biology | 36993443 | bioRxiv | 2023 Apr 18 | https://www.ncbi.nlm.nih.gov/pubmed/36993443 |
| Molecular fate-mapping of serum antibody responses to repeat immunization. | Schiepers A, van 't Wout MFL, Greaney AJ, Zang T, Muramatsu H, Lin PJC, Tam YK, Mesin L, Starr TN, Bieniasz PD, Pardi N, Bloom JD, Victora GD | Nature | 36646114 | Nature | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36646114 |
| Restricted Clonality and Limited Germinal Center Reentry Characterize Memory B Cell Reactivation by Boosting. | Mesin L, Schiepers A, Ersching J, Barbulescu A, Cavazzoni CB, Angelini A, Okada T, Kurosaki T, Victora GD | Cell | 31866068 | Cell | 2020 Jan 9 | https://www.ncbi.nlm.nih.gov/pubmed/31866068 |
| Monitoring the Interaction Between Dendritic Cells and T Cells In Vivo with LIPSTIC. | Pasqual G, Chudnovskiy A, Victora GD | Methods in molecular biology (Clifton, N.J.) | 36905509 | Methods Mol Biol | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/36905509 |
| Universal recording of immune cell interactions in vivo. | Nakandakari-Higa S, Walker S, Canesso MCC, van der Heide V, Chudnovskiy A, Kim DY, Jacobsen JT, Parsa R, Bilanovic J, Parigi SM, Fiedorczuk K, Fuchs E, Bilate AM, Pasqual G, Mucida D, Kamphorst AO, Pritykin Y, Victora GD | Nature | 38448581 | Nature | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38448581 |
| Opposing effects of pre-existing antibody and memory T cell help on the dynamics of recall germinal centers. | Schiepers A, van 't Wout MFL, Hobbs A, Mesin L, Victora GD | bioRxiv : the preprint server for biology | 38168231 | bioRxiv | 2023 Dec 15 | https://www.ncbi.nlm.nih.gov/pubmed/38168231 |
| Opposing effects of pre-existing antibody and memory T cell help on the dynamics of recall germinal centers. | Schiepers A, Van't Wout MFL, Hobbs A, Mesin L, Victora GD | Immunity | 38838672 | Immunity | 2024 Jul 9 | https://www.ncbi.nlm.nih.gov/pubmed/38838672 |
| Studying interactions between dendritic cells and T cells in vivo. | Chudnovskiy A, Pasqual G, Victora GD | Current opinion in immunology | 30884422 | Curr Opin Immunol | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/30884422 |
| Expression of Foxp3 by T follicular helper cells in end-stage germinal centers. | Jacobsen JT, Hu W, R Castro TB, Solem S, Galante A, Lin Z, Allon SJ, Mesin L, Bilate AM, Schiepers A, Shalek AK, Rudensky AY, Victora GD | Science (New York, N.Y.) | 34437125 | Science | 2021 Jul 16 | https://www.ncbi.nlm.nih.gov/pubmed/34437125 |
| Clonal replacement sustains long-lived germinal centers primed by respiratory viruses. | de Carvalho RVH, Ersching J, Barbulescu A, Hobbs A, Castro TBR, Mesin L, Jacobsen JT, Phillips BK, Hoffmann HH, Parsa R, Canesso MCC, Nowosad CR, Feng A, Leist SR, Baric RS, Yang E, Utz PJ, Victora GD | Cell | 36565697 | Cell | 2023 Jan 5 | https://www.ncbi.nlm.nih.gov/pubmed/36565697 |
| Distinct components of mRNA vaccines cooperate to instruct efficient germinal center responses. | Castaño D, Bettini E, Kumar B, Chudnovskiy A, Siv A, Protti G, Nakadakari-Higa S, Ceglia S, De Luna N, Chiu JE, Lederer K, Li SH, Ibrahim H, Muramatsu H, Mdluli T, Abraham E, Sahingur SE, Maillard I, Tam YK, Shin S, Hensley SE, Miner JJ, Lipinszki Z, Reboldi A, Pardi N, Spreafico R, Victora GD, Locci M | Cell | 41406961 | Cell | 2025 Dec 24 | https://www.ncbi.nlm.nih.gov/pubmed/41406961 |
| Cyclin D3 drives inertial cell cycling in dark zone germinal center B cells. | Pae J, Ersching J, Castro TBR, Schips M, Mesin L, Allon SJ, Ordovas-Montanes J, Mlynarczyk C, Melnick A, Efeyan A, Shalek AK, Meyer-Hermann M, Victora GD | The Journal of experimental medicine | 33332554 | J Exp Med | 2021 Apr 5 | https://www.ncbi.nlm.nih.gov/pubmed/33332554 |
| Identification of antigen-presenting cell-T cell interactions driving immune responses to food. | Campos Canesso MC, de Castro TBR, Nakandakari-Higa S, Lockhart A, Luehr J, Bortolatto J, Parsa R, Esterházy D, Lyu M, Liu TT, Murphy KM, Sonnenberg GF, Reis BS, Victora GD, Mucida D | Science (New York, N.Y.) | 39700315 | Science | 2025 Mar 14 | https://www.ncbi.nlm.nih.gov/pubmed/39700315 |
| Proximity-dependent labeling identifies dendritic cells that drive the tumor-specific CD4(+) T cell response. | Chudnovskiy A, Castro TBR, Nakandakari-Higa S, Cui A, Lin CH, Sade-Feldman M, Phillips BK, Pae J, Mesin L, Bortolatto J, Schweitzer LD, Pasqual G, Lu LF, Hacohen N, Victora GD | Science immunology | 39365874 | Sci Immunol | 2024 Oct 4 | https://www.ncbi.nlm.nih.gov/pubmed/39365874 |
| IL-17-producing γδ T cells protect against Clostridium difficile infection. | Chen YS, Chen IB, Pham G, Shao TY, Bangar H, Way SS, Haslam DB | The Journal of clinical investigation | 31990686 | J Clin Invest | 2020 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/31990686 |
| Maternal-fetal conflict averted by progesterone- induced FOXP3+ regulatory T cells. | Severance AL, Kinder JM, Xin L, Burg AR, Shao TY, Pham G, Tilburgs T, Goodman WA, Mesiano S, Way SS | iScience | 35637736 | iScience | 2022 Jun 17 | https://www.ncbi.nlm.nih.gov/pubmed/35637736 |
| Pregnancy enables antibody protection against intracellular infection. | Erickson JJ, Archer-Hartmann S, Yarawsky AE, Miller JLC, Seveau S, Shao TY, Severance AL, Miller-Handley H, Wu Y, Pham G, Wasik BR, Parrish CR, Hu YC, Lau JTY, Azadi P, Herr AB, Way SS | Nature | 35676476 | Nature | 2022 Jun | https://www.ncbi.nlm.nih.gov/pubmed/35676476 |
| Immunological Basis for Recurrent Fetal Loss and Pregnancy Complications. | Deshmukh H, Way SS | Annual review of pathology | 30183507 | Annu Rev Pathol | 2019 Jan 24 | https://www.ncbi.nlm.nih.gov/pubmed/30183507 |
| Immunology of Uterine and Vaginal Mucosae: (Trends in Immunology 39, 302-314, 2018). | Zhou JZ, Way SS, Chen K | Trends in immunology | 29530651 | Trends Immunol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29530651 |
| Preconceptual Zika virus asymptomatic infection protects against secondary prenatal infection. | Turner LH, Kinder JM, Wilburn A, D'Mello RJ, Braunlin MR, Jiang TT, Pham G, Way SS | PLoS pathogens | 29145516 | PLoS Pathog | 2017 Nov | https://www.ncbi.nlm.nih.gov/pubmed/29145516 |
| Mycobacterium tuberculosis-specific CD4+ and CD8+ T cells differ in their capacity to recognize infected macrophages. | Yang JD, Mott D, Sutiwisesak R, Lu YJ, Raso F, Stowell B, Babunovic GH, Lee J, Carpenter SM, Way SS, Fortune SM, Behar SM | PLoS pathogens | 29782535 | PLoS Pathog | 2018 Feb | https://www.ncbi.nlm.nih.gov/pubmed/29782535 |
| A disconnect between precursor frequency, expansion potential, and site-specific CD4+ T cell responses in aged mice. | Deshpande NR, Uhrlaub JL, Way SS, Nikolich-Žugich J, Kuhns MS | PloS one | 29864157 | PLoS One | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/29864157 |
| Mouse models of neutropenia reveal progenitor-stage-specific defects. | Muench DE, Olsson A, Ferchen K, Pham G, Serafin RA, Chutipongtanate S, Dwivedi P, Song B, Hay S, Chetal K, Trump-Durbin LR, Mookerjee-Basu J, Zhang K, Yu JC, Lutzko C, Myers KC, Nazor KL, Greis KD, Kappes DJ, Way SS, Salomonis N, Grimes HL | Nature | 32494068 | Nature | 2020 Jun | https://www.ncbi.nlm.nih.gov/pubmed/32494068 |
| Intestinal epithelial HDAC3 and MHC class II coordinate microbiota-specific immunity. | Eshleman EM, Shao TY, Woo V, Rice T, Engleman L, Didriksen BJ, Whitt J, Haslam DB, Way SS, Alenghat T | The Journal of clinical investigation | 36602872 | J Clin Invest | 2023 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/36602872 |
| Commensal Candida albicans Positively Calibrates Systemic Th17 Immunological Responses. | Shao TY, Ang WXG, Jiang TT, Huang FS, Andersen H, Kinder JM, Pham G, Burg AR, Ruff B, Gonzalez T, Khurana Hershey GK, Haslam DB, Way SS | Cell host & microbe | 30870622 | Cell Host Microbe | 2019 Mar 13 | https://www.ncbi.nlm.nih.gov/pubmed/30870622 |
| TCR Affinity Biases Th Cell Differentiation by Regulating CD25, Eef1e1, and Gbp2. | Kotov DI, Mitchell JS, Pengo T, Ruedl C, Way SS, Langlois RA, Fife BT, Jenkins MK | Journal of immunology (Baltimore, Md. : 1950) | 30858199 | J Immunol | 2019 May 1 | https://www.ncbi.nlm.nih.gov/pubmed/30858199 |
| Reproductive outcomes after pregnancy-induced displacement of preexisting microchimeric cells. | Shao TY, Kinder JM, Harper G, Pham G, Peng Y, Liu J, Gregory EJ, Sherman BE, Wu Y, Iten AE, Hu YC, Russi AE, Erickson JJ, Miller-Handley H, Way SS | Science (New York, N.Y.) | 37733857 | Science | 2023 Sep 22 | https://www.ncbi.nlm.nih.gov/pubmed/37733857 |
| Diffuse neuroinflammation and immature neuron loss in fetal Rhesus macaques after short-term intrauterine infection. | Presicce P, Beckman D, Diniz GB, Cappelletti M, Ott S, Bercovici S, Kale S, Babb P, Mohole J, Richardson LS, Kammala AK, Menon R, Miller LA, Crouch EE, Jobe AH, Divanovic S, Chougnet CA, Way SS, Morrison JH, Kallapur SG | Journal of neuroinflammation | 41535926 | J Neuroinflammation | 2026 Jan 15 | https://www.ncbi.nlm.nih.gov/pubmed/41535926 |
| Commensal Fungi Recapitulate the Protective Benefits of Intestinal Bacteria. | Jiang TT, Shao TY, Ang WXG, Kinder JM, Turner LH, Pham G, Whitt J, Alenghat T, Way SS | Cell host & microbe | 29174402 | Cell Host Microbe | 2017 Dec 13 | https://www.ncbi.nlm.nih.gov/pubmed/29174402 |
| Vaccination strategies to enhance immunity in neonates. | Kollmann TR, Marchant A, Way SS | Science (New York, N.Y.) | 32381718 | Science | 2020 May 8 | https://www.ncbi.nlm.nih.gov/pubmed/32381718 |
| Tacrolimus exposure windows responsible for Listeria monocytogenes infection susceptibility. | Miller-Handley H, Erickson JJ, Gregory EJ, Prasanphanich NS, Shao TY, Way SS | Transplant infectious disease : an official journal of the Transplantation Society | 34057792 | Transpl Infect Dis | 2021 Aug | https://www.ncbi.nlm.nih.gov/pubmed/34057792 |
| Differential IL-2 expression defines developmental fates of follicular versus nonfollicular helper T cells. | DiToro D, Winstead CJ, Pham D, Witte S, Andargachew R, Singer JR, Wilson CG, Zindl CL, Luther RJ, Silberger DJ, Weaver BT, Kolawole EM, Martinez RJ, Turner H, Hatton RD, Moon JJ, Way SS, Evavold BD, Weaver CT | Science (New York, N.Y.) | 30213884 | Science | 2018 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/30213884 |
| Kruppel-like factor 2+ CD4 T cells avert microbiota-induced intestinal inflammation. | Shao TY, Jiang TT, Stevens J, Russi AE, Troutman TD, Bernieh A, Pham G, Erickson JJ, Eshleman EM, Alenghat T, Jameson SC, Hogquist KA, Weaver CT, Haslam DB, Deshmukh H, Way SS | Cell reports | 37889750 | Cell Rep | 2023 Nov 28 | https://www.ncbi.nlm.nih.gov/pubmed/37889750 |
| Resilient anatomy and local plasticity of naive and stress haematopoiesis. | Wu Q, Zhang J, Kumar S, Shen S, Kincaid M, Johnson CB, Zhang YS, Turcotte R, Alt C, Ito K, Homan S, Sherman BE, Shao TY, Slaughter A, Weinhaus B, Song B, Filippi MD, Grimes HL, Lin CP, Ito K, Way SS, Kofron JM, Lucas D | Nature | 38509363 | Nature | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38509363 |
| Maternal Vaccination to Prevent Adverse Pregnancy Outcomes: An Underutilized Molecular Immunological Intervention? | Giles ML, Way SS, Marchant A, Aghaepour N, James T, Schaltz-Buchholzer F, Zazara D, Arck P, Kollmann TR | Journal of molecular biology | 37080422 | J Mol Biol | 2023 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/37080422 |
| Immunological implications of pregnancy-induced microchimerism. | Kinder JM, Stelzer IA, Arck PC, Way SS | Nature reviews. Immunology | 28480895 | Nat Rev Immunol | 2017 Aug | https://www.ncbi.nlm.nih.gov/pubmed/28480895 |
| Immunology of the Uterine and Vaginal Mucosae. | Zhou JZ, Way SS, Chen K | Trends in immunology | 29433961 | Trends Immunol | 2018 Apr | https://www.ncbi.nlm.nih.gov/pubmed/29433961 |
| Preconceptual Priming Overrides Susceptibility to Escherichia coli Systemic Infection during Pregnancy. | Prasanphanich NS, Gregory EJ, Erickson JJ, Miller-Handley H, Kinder JM, Way SS | mBio | 33622714 | mBio | 2021 Feb 23 | https://www.ncbi.nlm.nih.gov/pubmed/33622714 |
| In situ mapping identifies distinct vascular niches for myelopoiesis. | Zhang J, Wu Q, Johnson CB, Pham G, Kinder JM, Olsson A, Slaughter A, May M, Weinhaus B, D'Alessandro A, Engel JD, Jiang JX, Kofron JM, Huang LF, Prasath VBS, Way SS, Salomonis N, Grimes HL, Lucas D | Nature | 33568812 | Nature | 2021 Feb | https://www.ncbi.nlm.nih.gov/pubmed/33568812 |
| Persistent Zika Virus Clinical Susceptibility despite Reduced Viral Burden in Mice with Expanded Virus-Specific CD8(+) T Cells Primed by Recombinant Listeria monocytogenes. | Burg AR, Erickson JJ, Turner LH, Pham G, Kinder JM, Way SS | Journal of immunology (Baltimore, Md. : 1950) | 32522837 | J Immunol | 2020 Jul 15 | https://www.ncbi.nlm.nih.gov/pubmed/32522837 |
| Systematic reconstruction of an effector-gene network reveals determinants of Salmonella cellular and tissue tropism. | Chen D, Burford WB, Pham G, Zhang L, Alto LT, Ertelt JM, Winter MG, Winter SE, Way SS, Alto NM | Cell host & microbe | 34536347 | Cell Host Microbe | 2021 Oct 13 | https://www.ncbi.nlm.nih.gov/pubmed/34536347 |
| The induction of preterm labor in rhesus macaques is determined by the strength of immune response to intrauterine infection. | Cappelletti M, Presicce P, Feiyang M, Senthamaraikannan P, Miller LA, Pellegrini M, Sim MS, Jobe AH, Divanovic S, Way SS, Chougnet CA, Kallapur SG | PLoS biology | 34495952 | PLoS Biol | 2021 Sep | https://www.ncbi.nlm.nih.gov/pubmed/34495952 |
| Tolerance to non-inherited maternal antigen is sustained by LysM(+) CD11c(+) maternal microchimeric cells. | Peng Y, Pham G, Sun J, Adhikari U, Kumar S, Shao TY, Kinder JM, Turner LH, Way SS | Immunity | 40902588 | Immunity | 2025 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/40902588 |
| Epidemiology of Pregnancy Complications Through the Lens of Immunological Memory. | Gregory EJ, Liu J, Miller-Handley H, Kinder JM, Way SS | Frontiers in immunology | 34248991 | Front Immunol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34248991 |
| Friendly fungi: symbiosis with commensal Candida albicans. | Shao TY, Haslam DB, Bennett RJ, Way SS | Trends in immunology | 35961916 | Trends Immunol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/35961916 |
| Candida albicans oscillating UME6 expression during intestinal colonization primes systemic Th17 protective immunity. | Shao TY, Kakade P, Witchley JN, Frazer C, Murray KL, Ene IV, Haslam DB, Hagan T, Noble SM, Bennett RJ, Way SS | Cell reports | 35584674 | Cell Rep | 2022 May 17 | https://www.ncbi.nlm.nih.gov/pubmed/35584674 |
| CD8(+) T Cell Functional Exhaustion Overrides Pregnancy-Induced Fetal Antigen Alloimmunization. | Kinder JM, Turner LH, Stelzer IA, Miller-Handley H, Burg A, Shao TY, Pham G, Way SS | Cell reports | 32579916 | Cell Rep | 2020 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/32579916 |
| Declining responsiveness to influenza vaccination with progression of human pregnancy. | Schlaudecker EP, Ambroggio L, McNeal MM, Finkelman FD, Way SS | Vaccine | 29941326 | Vaccine | 2018 Jul 25 | https://www.ncbi.nlm.nih.gov/pubmed/29941326 |
| Fungus Among Us: The Frenemies Within. | Aggor FEY, Way SS, Gaffen SL | Trends in immunology | 31053496 | Trends Immunol | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31053496 |
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| TRIM14 Is a Key Regulator of the Type I IFN Response during Mycobacterium tuberculosis Infection. | Hoffpauir CT, Bell SL, West KO, Jing T, Wagner AR, Torres-Odio S, Cox JS, West AP, Li P, Patrick KL, Watson RO | Journal of immunology (Baltimore, Md. : 1950) | 32404352 | J Immunol | 2020 Jul 1 | https://www.ncbi.nlm.nih.gov/pubmed/32404352 |
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| Elimination of vision-guided target attraction in Aedes aegypti using CRISPR. | Zhan Y, Alonso San Alberto D, Rusch C, Riffell JA, Montell C | Current biology : CB | 34331858 | Curr Biol | 2021 Sep 27 | https://www.ncbi.nlm.nih.gov/pubmed/34331858 |
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| Pseudotyping of HIV-1 with Human T-Lymphotropic Virus 1 (HTLV-1) Envelope Glycoprotein during HIV-1-HTLV-1 Coinfection Facilitates Direct HIV-1 Infection of Female Genital Epithelial Cells: Implications for Sexual Transmission of HIV-1. | Tang Y, George AM, Petrechko O, Nouvet FJ, Sweet SD, Tanaka Y, Imbiakha BS, Jiang G, Gao W, Anastos K, Hildreth JEK | mSphere | 29624497 | mSphere | 2018 Apr 25 | https://www.ncbi.nlm.nih.gov/pubmed/29624497 |
| A Bird's-Eye View of Glycolytic Upregulation in Activated Brain: The Major Fate of Lactate Is Release From Activated Tissue, Not Shuttling to Nearby Neurons. | Dienel GA, Rothman DL, Mangia S | Journal of neurochemistry | 40476345 | J Neurochem | 2025 Jun | https://www.ncbi.nlm.nih.gov/pubmed/40476345 |
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| Reduced removal of waste products from energy metabolism takes center stage in human brain aging. | Mangia S, DiNuzzo M, Ponticorvo S, Dienel GA, Behar KL, Benveniste H, Hyder F, Giove F, Herculano-Houzel S, Petroff OA, Eberly LE, Filip P, Michaeli S, Rothman DL | Scientific reports | 40057554 | Sci Rep | 2025 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/40057554 |
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| Clinical and MRI Correlates of β-Amyloid Load Inconsistent With Its Presumed Neurotoxicity in Cognitively Healthy Ageing. | Filip P, McCarten JR, Hemmy L, Crocker J, Wolf M, Thotland J, Cayci Z, Kes T, Michaeli S, Terpstra M, Mangia S | Journal of neurochemistry | 40984796 | J Neurochem | 2025 Sep | https://www.ncbi.nlm.nih.gov/pubmed/40984796 |
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| Optimizing Temporal Waveform Analysis: A Novel Pipeline for Efficient Characterization of Left Coronary Artery Velocity Profiles. | Geddes JR, Randles A | ArXiv | 38410654 | ArXiv | 2024 Feb 15 | https://www.ncbi.nlm.nih.gov/pubmed/38410654 |
| Establishing the longitudinal hemodynamic mapping framework for wearable-driven coronary digital twins. | Tanade C, Khan NS, Rakestraw E, Ladd WD, Draeger EW, Randles A | NPJ digital medicine | 39242829 | NPJ Digit Med | 2024 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/39242829 |
| Digital twins for noninvasively measuring predictive markers of right heart failure. | Geddes JR, Jensen CW, Tanade C, Ghorbannia A, Fudim M, Patel MR, Randles A | NPJ digital medicine | 40855169 | NPJ Digit Med | 2025 Aug 25 | https://www.ncbi.nlm.nih.gov/pubmed/40855169 |
| Diagnostic Performance of Coronary Angiography Derived Computational Fractional Flow Reserve. | Vardhan M, Tanade C, Chen SJ, Mahmood O, Chakravartti J, Jones WS, Kahn AM, Vemulapalli S, Patel M, Leopold JA, Randles A | Journal of the American Heart Association | 38904250 | J Am Heart Assoc | 2024 Jul 2 | https://www.ncbi.nlm.nih.gov/pubmed/38904250 |
| Optimizing Temporal Waveform Analysis: A Novel Pipeline for Efficient Characterization of Left Coronary Artery Velocity Profiles. | Geddes JR, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 40039291 | Annu Int Conf IEEE Eng Med Biol Soc | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40039291 |
| Identifying When Steady-State Flow Simulations In Patient-Specific Coronaries Recapitulate Pulsatile Flow Dynamics. | Huber M, Jiang J, Tanade C, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 40039843 | Annu Int Conf IEEE Eng Med Biol Soc | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40039843 |
| Hemodynamics comparison of an hour-long rest and activity state data in a human coronary digital twin. | Mavi JK, Tanade C, Ladd W, Geddes J, Khan NS, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 40039549 | Annu Int Conf IEEE Eng Med Biol Soc | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40039549 |
| Systematic characterization and automated alignment of coronary tree geometries. | Ghorbannia A, Randles A | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 40040172 | Annu Int Conf IEEE Eng Med Biol Soc | 2024 Jul | https://www.ncbi.nlm.nih.gov/pubmed/40040172 |
| Cloud Computing to Enable Wearable-Driven Longitudinal Hemodynamic Maps. | Tanade C, Rakestraw E, Ladd W, Draeger E, Randles A | International Conference for High Performance Computing, Networking, Storage and Analysis : [proceedings]. SC (Conference : Supercomputing) | 38939612 | Int Conf High Perform Comput Netw Storage Anal | 2023 Nov | https://www.ncbi.nlm.nih.gov/pubmed/38939612 |
| Modeling the effect of patient size on cerebral perfusion during veno-arterial extracorporeal membrane oxygenation. | Feiger B, Jensen CW, Bryner BS, Segars WP, Randles A | Perfusion | 37395266 | Perfusion | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/37395266 |
| Investigating the Influence of Heterogeneity Within Cell Types on Microvessel Network Transport. | Nan J, Roychowdhury S, Randles A | Cellular and molecular bioengineering | 38099216 | Cell Mol Bioeng | 2023 Dec | https://www.ncbi.nlm.nih.gov/pubmed/38099216 |
| Surgical Modulation of Pulmonary Artery Shear Stress: A Patient-Specific CFD Analysis of the Norwood Procedure. | Chidyagwai SG, Kaplan MS, Jensen CW, Chen JS, Chamberlain RC, Hill KD, Barker PCA, Slesnick TC, Randles A | Cardiovascular engineering and technology | 38459240 | Cardiovasc Eng Technol | 2024 Aug | https://www.ncbi.nlm.nih.gov/pubmed/38459240 |
| 3D pore shape is predictable in randomly packed particle systems. | Saxena Y, Riley L, Wu R, Kabir MS, Randles A, Segura T | Matter | 41268054 | Matter | 2025 Oct 20 | https://www.ncbi.nlm.nih.gov/pubmed/41268054 |
| Photon-Counting CT for Evaluation of Coiled Intracranial Aneurysms. | Mac Grory B, Randles A, Urick DM, Schwartz FR, Hasan D, Calabrese ED | AJNR. American journal of neuroradiology | 40973460 | AJNR Am J Neuroradiol | 2026 Apr 2 | https://www.ncbi.nlm.nih.gov/pubmed/40973460 |
| Pseudomonas aeruginosa modulates both Caenorhabditis elegans attraction and pathogenesis by regulating nitrogen assimilation. | Marogi JG, Murphy CT, Myhrvold C, Gitai Z | Nature communications | 39256376 | Nat Commun | 2024 Sep 10 | https://www.ncbi.nlm.nih.gov/pubmed/39256376 |
| Neuronal activation of G(αq) EGL-30/GNAQ late in life rejuvenates cognition across species. | Stevenson ME, Bieri G, Kaletsky R, St Ange J, Remesal L, Pratt KJB, Zhou S, Weng Y, Murphy CT, Villeda SA | Cell reports | 37713310 | Cell Rep | 2023 Sep 26 | https://www.ncbi.nlm.nih.gov/pubmed/37713310 |
| CeLab, a microfluidic platform for the study of life history traits, reveals metformin and SGK-1 regulation of longevity and reproductive span. | Sohrabi S, Cota V, Murphy CT | Lab on a chip | 37221962 | Lab Chip | 2023 Jun 13 | https://www.ncbi.nlm.nih.gov/pubmed/37221962 |
| Drugging evolution of antibiotic resistance at a regulatory network hub. | Zhai Y, Pribis JP, Dooling SW, Garcia-Villada L, Minnick PJ, Xia J, Liu J, Mei Q, Fitzgerald DM, Herman C, Hastings PJ, Costa-Mattioli M, Rosenberg SM | Science advances | 37352342 | Sci Adv | 2023 Jun 23 | https://www.ncbi.nlm.nih.gov/pubmed/37352342 |
| Life, the genome and everything. | Rosenberg SM | Journal of bacteriology | 38018999 | J Bacteriol | 2023 Dec 19 | https://www.ncbi.nlm.nih.gov/pubmed/38018999 |
| Cancer drug-tolerant persister cells: from biological questions to clinical opportunities. | Russo M, Chen M, Mariella E, Peng H, Rehman SK, Sancho E, Sogari A, Toh TS, Balaban NQ, Batlle E, Bernards R, Garnett MJ, Hangauer M, Leucci E, Marine JC, O'Brien CA, Oren Y, Patton EE, Robert C, Rosenberg SM, Shen S, Bardelli A | Nature reviews. Cancer | 39223250 | Nat Rev Cancer | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39223250 |
| Genomic mapping of DNA-repair reaction intermediates in living cells with engineered DNA structure-trap proteins. | Liu J, Mei Q, Nimer S, Fitzgerald DM, Rosenberg SM | Methods in enzymology | 34776211 | Methods Enzymol | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/34776211 |
| Biology before the SOS Response-DNA Damage Mechanisms at Chromosome Fragile Sites. | Fitzgerald DM, Rosenberg SM | Cells | 34571923 | Cells | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34571923 |
| Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer. | Byun J, Han Y, Li Y, Xia J, Long E, Choi J, Xiao X, Zhu M, Zhou W, Sun R, Bossé Y, Song Z, Schwartz A, Lusk C, Rafnar T, Stefansson K, Zhang T, Zhao W, Pettit RW, Liu Y, Li X, Zhou H, Walsh KM, Gorlov I, Gorlova O, Zhu D, Rosenberg SM, Pinney S, Bailey-Wilson JE, Mandal D, de Andrade M, Gaba C, Willey JC, You M, Anderson M, Wiencke JK, Albanes D, Lam S, Tardon A, Chen C, Goodman G, Bojeson S, Brenner H, Landi MT, Chanock SJ, Johansson M, Muley T, Risch A, Wichmann HE, Bickeböller H, Christiani DC, Rennert G, Arnold S, Field JK, Shete S, Le Marchand L, Melander O, Brunnstrom H, Liu G, Andrew AS, Kiemeney LA, Shen H, Zienolddiny S, Grankvist K, Johansson M, Caporaso N, Cox A, Hong YC, Yuan JM, Lazarus P, Schabath MB, Aldrich MC, Patel A, Lan Q, Rothman N, Taylor F, Kachuri L, Witte JS, Sakoda LC, Spitz M, Brennan P, Lin X, McKay J, Hung RJ, Amos CI | Nature genetics | 35915169 | Nat Genet | 2022 Aug | https://www.ncbi.nlm.nih.gov/pubmed/35915169 |
| Rapid profiling of DNA replication dynamics using mass spectrometry-based analysis of nascent DNA. | Ashour ME, Byrum AK, Meroni A, Xia J, Singh S, Galletto R, Rosenberg SM, Vindigni A, Mosammaparast N | The Journal of cell biology | 36795402 | J Cell Biol | 2023 Apr 3 | https://www.ncbi.nlm.nih.gov/pubmed/36795402 |
| IRE1α silences dsRNA to prevent taxane-induced pyroptosis in triple-negative breast cancer. | Xu L, Peng F, Luo Q, Ding Y, Yuan F, Zheng L, He W, Zhang SS, Fu X, Liu J, Mutlu AS, Wang S, Nehring RB, Li X, Tang Q, Li C, Lv X, Dobrolecki LE, Zhang W, Han D, Zhao N, Jaehnig E, Wang J, Wu W, Graham DA, Li Y, Chen R, Peng W, Chen Y, Catic A, Zhang Z, Zhang B, Mustoe AM, Koong AC, Miles G, Lewis MT, Wang MC, Rosenberg SM, O'Malley BW, Westbrook TF, Xu H, Zhang XH, Osborne CK, Li JB, Ellis MJ, Rimawi MF, Rosen JM, Chen X | Cell | 39419025 | Cell | 2024 Dec 12 | https://www.ncbi.nlm.nih.gov/pubmed/39419025 |
| Stress-Induced Mutagenesis, Gambler Cells, and Stealth Targeting Antibiotic-Induced Evolution. | Pribis JP, Zhai Y, Hastings PJ, Rosenberg SM | mBio | 35658528 | mBio | 2022 Jun 28 | https://www.ncbi.nlm.nih.gov/pubmed/35658528 |
| Lung Cancer in Ever- and Never-Smokers: Findings from Multi-Population GWAS Studies. | Li Y, Xiao X, Li J, Han Y, Cheng C, Fernandes GF, Slewitzke SE, Rosenberg SM, Zhu M, Byun J, Bossé Y, McKay JD, Albanes D, Lam S, Tardon A, Chen C, Bojesen SE, Landi MT, Johansson M, Risch A, Bickeböller H, Wichmann HE, Christiani DC, Rennert G, Arnold SM, Goodman GE, Field JK, Davies MPA, Shete S, Marchand LL, Liu G, Hung RJ, Andrew AS, Kiemeney LA, Sun R, Zienolddiny S, Grankvist K, Johansson M, Caporaso NE, Cox A, Hong YC, Lazarus P, Schabath MB, Aldrich MC, Schwartz AG, Gorlov I, Purrington KS, Yang P, Liu Y, Bailey-Wilson JE, Pinney SM, Mandal D, Willey JC, Gaba C, Brennan P, Xia J, Shen H, Amos CI | Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology | 38180474 | Cancer Epidemiol Biomarkers Prev | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/38180474 |
| Targeting Infectious Agents as a Therapeutic Strategy in Alzheimer's Disease. | Fülöp T, Munawara U, Larbi A, Desroches M, Rodrigues S, Catanzaro M, Guidolin A, Khalil A, Bernier F, Barron AE, Hirokawa K, Beauregard PB, Dumoulin D, Bellenger JP, Witkowski JM, Frost E | CNS drugs | 32458360 | CNS Drugs | 2020 Jul | https://www.ncbi.nlm.nih.gov/pubmed/32458360 |
| Efficacy of Cathelicidin-Mimetic Antimicrobial Peptoids against Staphylococcus aureus. | Benjamin AB, Moule MG, Didwania MK, Hardy J, Saenkham-Huntsinger P, Sule P, Nielsen JE, Lin JS, Contag CH, Barron AE, Cirillo JD | Microbiology spectrum | 35467395 | Microbiol Spectr | 2022 Jun 29 | https://www.ncbi.nlm.nih.gov/pubmed/35467395 |
| Peptide-mimetic treatment of Pseudomonas aeruginosa in a mouse model of respiratory infection. | Moule MG, Benjamin AB, Burger ML, Herlan C, Lebedev M, Lin JS, Koster KJ, Wavare N, Adams LG, Bräse S, Munoz-Medina R, Cannon CL, Barron AE, Cirillo JD | Communications biology | 39174819 | Commun Biol | 2024 Aug 22 | https://www.ncbi.nlm.nih.gov/pubmed/39174819 |
| Acid-degradable lipid nanoparticles enhance the delivery of mRNA. | Zhao S, Gao K, Han H, Stenzel M, Yin B, Song H, Lawanprasert A, Nielsen JE, Sharma R, Arogundade OH, Pimcharoen S, Chen YJ, Paul A, Tuma J, Collins MG, Wyle Y, Cranick MG, Burgstone BW, Perez BS, Barron AE, Smith AM, Lee HY, Wang A, Murthy N | Nature nanotechnology | 39179796 | Nat Nanotechnol | 2024 Nov | https://www.ncbi.nlm.nih.gov/pubmed/39179796 |
| Antiviral Effect of Antimicrobial Peptoid TM9 and Murine Model of Respiratory Coronavirus Infection. | Lebedev M, Benjamin AB, Kumar S, Molchanova N, Lin JS, Koster KJ, Leibowitz JL, Barron AE, Cirillo JD | Pharmaceutics | 38675125 | Pharmaceutics | 2024 Mar 27 | https://www.ncbi.nlm.nih.gov/pubmed/38675125 |
| Hyperactivation of monocytes and macrophages in MCI patients contributes to the progression of Alzheimer's disease. | Munawara U, Catanzaro M, Xu W, Tan C, Hirokawa K, Bosco N, Dumoulin D, Khalil A, Larbi A, Lévesque S, Ramassamy C, Barron AE, Cunnane S, Beauregard PB, Bellenger JP, Rodrigues S, Desroches M, Witkowski JM, Laurent B, Frost EH, Fulop T | Immunity & ageing : I & A | 34154615 | Immun Ageing | 2021 Jun 21 | https://www.ncbi.nlm.nih.gov/pubmed/34154615 |
| Supramolecular Peptoid Structure Strengthens Complexation with Polyacrylic Acid Microgels. | Zhao W, Lin JS, Nielsen JE, Sørensen K, Wadurkar AS, Ji J, Barron AE, Nangia S, Libera MR | Biomacromolecules | 38240722 | Biomacromolecules | 2024 Feb 12 | https://www.ncbi.nlm.nih.gov/pubmed/38240722 |
| Antiviral effect of peptoids on hepatitis B virus infection in cell culture. | Murayama A, Igarashi H, Yamada N, Aly HH, Molchanova N, Lin JS, Nishitsuji H, Shimotohno K, Muramatsu M, Barron AE, Kato T | Antiviral research | 38272318 | Antiviral Res | 2024 Mar | https://www.ncbi.nlm.nih.gov/pubmed/38272318 |
| Author Correction: Peptide-mimetic treatment of Pseudomonas aeruginosa in a mouse model of respiratory infection. | Moule MG, Benjamin AB, Burger ML, Herlan C, Lebedev M, Lin JS, Koster KJ, Wavare N, Adams LG, Bräse S, Munoz-Medina R, Cannon CL, Barron AE, Cirillo JD | Communications biology | 39271756 | Commun Biol | 2024 Sep 13 | https://www.ncbi.nlm.nih.gov/pubmed/39271756 |
| Pf bacteriophages hinder sputum antibiotic diffusion via electrostatic binding. | Chen Q, Cai P, Chang THW, Burgener E, Kratochvil MJ, Gupta A, Hargil A, Secor PR, Nielsen JE, Barron AE, Milla C, Heilshorn SC, Spakowitz A, Bollyky PL | bioRxiv : the preprint server for biology | 38496625 | bioRxiv | 2024 Mar 10 | https://www.ncbi.nlm.nih.gov/pubmed/38496625 |
| Potent Antiviral Activity against HSV-1 and SARS-CoV-2 by Antimicrobial Peptoids. | Diamond G, Molchanova N, Herlan C, Fortkort JA, Lin JS, Figgins E, Bopp N, Ryan LK, Chung D, Adcock RS, Sherman M, Barron AE | Pharmaceuticals (Basel, Switzerland) | 33807248 | Pharmaceuticals (Basel) | 2021 Mar 31 | https://www.ncbi.nlm.nih.gov/pubmed/33807248 |
| Membrane-acting biomimetic peptoids against visceral leishmaniasis. | Kumar V, Lin JS, Molchanova N, Fortkort JA, Reckmann C, Bräse S, Jenssen H, Barron AE, Chugh A | FEBS open bio | 36683396 | FEBS Open Bio | 2023 Mar | https://www.ncbi.nlm.nih.gov/pubmed/36683396 |
| Anti-persister and Anti-biofilm Activity of Self-Assembled Antimicrobial Peptoid Ellipsoidal Micelles. | Lin JS, Bekale LA, Molchanova N, Nielsen JE, Wright M, Bacacao B, Diamond G, Jenssen H, Santa Maria PL, Barron AE | ACS infectious diseases | 36018039 | ACS Infect Dis | 2022 Sep 9 | https://www.ncbi.nlm.nih.gov/pubmed/36018039 |
| The anti-inflammatory effects of photobiomodulation are mediated by cytokines: Evidence from a mouse model of inflammation. | Shamloo S, Defensor E, Ciari P, Ogawa G, Vidano L, Lin JS, Fortkort JA, Shamloo M, Barron AE | Frontiers in neuroscience | 37090796 | Front Neurosci | 2023 | https://www.ncbi.nlm.nih.gov/pubmed/37090796 |
| The effect of immobilisation strategies on the ability of peptoids to reduce the adhesion of P. aeruginosa strains to contact lenses. | Sara M, Chakraborty S, Chen R, Palms D, Katsifis G, Li Z, Farajikhah S, Massedupally V, Hui A, Wong EHH, Kumar N, Vasilev K, Mackenzie D, Losurdo L, Dehghani F, Jenssen H, Sorensen K, Lin JS, Barron AE, Willcox M | Experimental eye research | 39571778 | Exp Eye Res | 2025 Jan | https://www.ncbi.nlm.nih.gov/pubmed/39571778 |
| From Global to Nano: A Geographical Perspective of Aggregatibacter actinomycetemcomitans. | Ryder MI, Fine DH, Barron AE | Pathogens (Basel, Switzerland) | 39452709 | Pathogens | 2024 Sep 27 | https://www.ncbi.nlm.nih.gov/pubmed/39452709 |
| The dysregulation of innate immunity by Porphyromonas gingivalis in the etiology of Alzheimer's disease. | Barron AE, Lin JS, Ryder MI, Bergman P | Journal of internal medicine | 41424314 | J Intern Med | 2026 Mar | https://www.ncbi.nlm.nih.gov/pubmed/41424314 |
| Targeting Impaired Antimicrobial Immunity in the Brain for the Treatment of Alzheimer's Disease. | Fulop T, Tripathi S, Rodrigues S, Desroches M, Bunt T, Eiser A, Bernier F, Beauregard PB, Barron AE, Khalil A, Plotka A, Hirokawa K, Larbi A, Bocti C, Laurent B, Frost EH, Witkowski JM | Neuropsychiatric disease and treatment | 33976546 | Neuropsychiatr Dis Treat | 2021 | https://www.ncbi.nlm.nih.gov/pubmed/33976546 |
| Ethylene oxide graft copolymers reduce the immunogenicity of lipid nanoparticles. | Qi Y, Han H, Liu A, Zhao S, Lawanprasert A, Nielsen JE, Choudhary H, Liang D, Barron AE, Murthy N | RSC advances | 39309654 | RSC Adv | 2024 Sep 18 | https://www.ncbi.nlm.nih.gov/pubmed/39309654 |
| Self-Assembly of Antimicrobial Peptoids Impacts Their Biological Effects on ESKAPE Bacterial Pathogens. | Nielsen JE, Alford MA, Yung DBY, Molchanova N, Fortkort JA, Lin JS, Diamond G, Hancock REW, Jenssen H, Pletzer D, Lund R, Barron AE | ACS infectious diseases | 35175731 | ACS Infect Dis | 2022 Mar 11 | https://www.ncbi.nlm.nih.gov/pubmed/35175731 |
| Real-Time Monitoring of Multitarget Antimicrobial Mechanisms of Peptoids Using Label-Free Imaging with Optical Diffraction Tomography. | Kim M, Cheon Y, Shin D, Choi J, Nielsen JE, Jeong MS, Nam HY, Kim SH, Lund R, Jenssen H, Barron AE, Lee S, Seo J | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 37341246 | Adv Sci (Weinh) | 2023 Aug | https://www.ncbi.nlm.nih.gov/pubmed/37341246 |
| The activity of antimicrobial peptoids against multidrug-resistant ocular pathogens. | Sara M, Yasir M, Kalaiselvan P, Hui A, Kuppusamy R, Kumar N, Chakraborty S, Yu TT, Wong EHH, Molchanova N, Jenssen H, Lin JS, Barron AE, Willcox M | Contact lens & anterior eye : the journal of the British Contact Lens Association | 38341309 | Cont Lens Anterior Eye | 2024 Apr | https://www.ncbi.nlm.nih.gov/pubmed/38341309 |
| Skin-resident immune cells actively coordinate their distribution with epidermal cells during homeostasis. | Park S, Matte-Martone C, Gonzalez DG, Lathrop EA, May DP, Pineda CM, Moore JL, Boucher JD, Marsh E, Schmitter-Sánchez A, Cockburn K, Markova O, Bellaïche Y, Greco V | Nature cell biology | 33958758 | Nat Cell Biol | 2021 May | https://www.ncbi.nlm.nih.gov/pubmed/33958758 |
| Cell cycle controls long-range calcium signaling in the regenerating epidermis. | Moore JL, Bhaskar D, Gao F, Matte-Martone C, Du S, Lathrop E, Ganesan S, Shao L, Norris R, Campamà Sanz N, Annusver K, Kasper M, Cox A, Hendry C, Rieck B, Krishnaswamy S, Greco V | The Journal of cell biology | 37102999 | J Cell Biol | 2023 Jul 3 | https://www.ncbi.nlm.nih.gov/pubmed/37102999 |
| Live imaging reveals chromatin compaction transitions and dynamic transcriptional bursting during stem cell differentiation in vivo. | May D, Yun S, Gonzalez DG, Park S, Chen Y, Lathrop E, Cai B, Xin T, Zhao H, Wang S, Gonzalez LE, Cockburn K, Greco V | eLife | 36880644 | Elife | 2023 Mar 7 | https://www.ncbi.nlm.nih.gov/pubmed/36880644 |
| Organ function is preserved despite reorganization of niche architecture in the hair follicle. | Wei H, Du S, Parksong J, Pasolli HA, Matte-Martone C, Regot S, Gonzalez LE, Xin T, Greco V | Cell stem cell | 37419106 | Cell Stem Cell | 2023 Jul 6 | https://www.ncbi.nlm.nih.gov/pubmed/37419106 |
| Selective utilization of glucose metabolism guides mammalian gastrulation. | Cao D, Bergmann J, Zhong L, Hemalatha A, Dingare C, Jensen T, Cox AL, Greco V, Steventon B, Sozen B | Nature | 39415005 | Nature | 2024 Oct | https://www.ncbi.nlm.nih.gov/pubmed/39415005 |
| Mechanisms of skin vascular maturation and maintenance captured by longitudinal imaging of live mice. | Kam CY, Singh ID, Gonzalez DG, Matte-Martone C, Solá P, Solanas G, Bonjoch J, Marsh E, Hirschi KK, Greco V | Cell | 37167971 | Cell | 2023 May 25 | https://www.ncbi.nlm.nih.gov/pubmed/37167971 |
| A Spatiotemporal Compartmentalization of Glucose Metabolism Guides Mammalian Gastrulation Progression. | Cao D, Zhong L, Hemalatha A, Bergmann J, Cox AL, Greco V, Sozen B | bioRxiv : the preprint server for biology | 37333168 | bioRxiv | 2023 Jun 8 | https://www.ncbi.nlm.nih.gov/pubmed/37333168 |
| The art of observation: bridging science and art to see the unexpected. | Gonzalez LE, Wei H, Greco V, Friedlaender LK | Development (Cambridge, England) | 38477686 | Development | 2024 Mar 1 | https://www.ncbi.nlm.nih.gov/pubmed/38477686 |
| Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks. | Yamamoto T, Cockburn K, Greco V, Kawaguchi K | PLoS computational biology | 36067226 | PLoS Comput Biol | 2022 Sep | https://www.ncbi.nlm.nih.gov/pubmed/36067226 |
| Functional cell death, corneoptosis, requires temporally controlled intracellular acidification. | Moore JL, Greco V | Proceedings of the National Academy of Sciences of the United States of America | 33986147 | Proc Natl Acad Sci U S A | 2021 Jun 1 | https://www.ncbi.nlm.nih.gov/pubmed/33986147 |
| Gradual differentiation uncoupled from cell cycle exit generates heterogeneity in the epidermal stem cell layer. | Cockburn K, Annusver K, Gonzalez DG, Ganesan S, May DP, Mesa KR, Kawaguchi K, Kasper M, Greco V | Nature cell biology | 36357619 | Nat Cell Biol | 2022 Dec | https://www.ncbi.nlm.nih.gov/pubmed/36357619 |
| Injury prevents Ras mutant cell expansion in mosaic skin. | Gallini S, Annusver K, Rahman NT, Gonzalez DG, Yun S, Matte-Martone C, Xin T, Lathrop E, Suozzi KC, Kasper M, Greco V | Nature | 37344586 | Nature | 2023 Jul | https://www.ncbi.nlm.nih.gov/pubmed/37344586 |
| Metabolic rewiring in skin epidermis drives tolerance to oncogenic mutations. | Hemalatha A, Li Z, Gonzalez DG, Matte-Martone C, Tai K, Lathrop E, Gil D, Ganesan S, Gonzalez LE, Skala M, Perry RJ, Greco V | Nature cell biology | 39762578 | Nat Cell Biol | 2025 Feb | https://www.ncbi.nlm.nih.gov/pubmed/39762578 |
| Oncogenic Kras induces spatiotemporally specific tissue deformation through converting pulsatile into sustained ERK activation. | Xin T, Gallini S, Wei H, Gonzalez DG, Matte-Martone C, Machida H, Fujiwara H, Pasolli HA, Suozzi KC, Gonzalez LE, Regot S, Greco V | Nature cell biology | 38689013 | Nat Cell Biol | 2024 Jun | https://www.ncbi.nlm.nih.gov/pubmed/38689013 |
| From start to finish-a molecular link in wound repair. | Yun S, Greco V | Science (New York, N.Y.) | 35143296 | Science | 2022 Feb 11 | https://www.ncbi.nlm.nih.gov/pubmed/35143296 |
| Fibroblast depletion reveals mammalian epithelial resilience across neonatal and adult stages. | Gaeta IM, Du S, Villeneuve C, Gonzalez DG, Matte-Martone C, Ganesan S, Simpson D, Moore JL, Kam CY, Gallini S, Wei H, Bertillot F, Zeuschner D, Gonzalez LE, Sumigray KD, Wickström SA, Greco V | bioRxiv : the preprint server for biology | 40766486 | bioRxiv | 2025 Jul 31 | https://www.ncbi.nlm.nih.gov/pubmed/40766486 |
| Directed evolution of a family of AAV capsid variants enabling potent muscle-directed gene delivery across species. | Tabebordbar M, Lagerborg KA, Stanton A, King EM, Ye S, Tellez L, Krunnfusz A, Tavakoli S, Widrick JJ, Messemer KA, Troiano EC, Moghadaszadeh B, Peacker BL, Leacock KA, Horwitz N, Beggs AH, Wagers AJ, Sabeti PC | Cell | 34506722 | Cell | 2021 Sep 16 | https://www.ncbi.nlm.nih.gov/pubmed/34506722 |
| In Situ Modification of Tissue Stem and Progenitor Cell Genomes. | Goldstein JM, Tabebordbar M, Zhu K, Wang LD, Messemer KA, Peacker B, Ashrafi Kakhki S, Gonzalez-Celeiro M, Shwartz Y, Cheng JKW, Xiao R, Barungi T, Albright C, Hsu YC, Vandenberghe LH, Wagers AJ | Cell reports | 31018138 | Cell Rep | 2019 Apr 23 | https://www.ncbi.nlm.nih.gov/pubmed/31018138 |
| Dissecting dual roles of MyoD during lineage conversion to mature myocytes and myogenic stem cells. | Yagi M, Ji F, Charlton J, Cristea S, Messemer K, Horwitz N, Di Stefano B, Tsopoulidis N, Hoetker MS, Huebner AJ, Bar-Nur O, Almada AE, Yamamoto M, Patelunas A, Goldhamer DJ, Wagers AJ, Michor F, Meissner A, Sadreyev RI, Hochedlinger K | Genes & development | 34413137 | Genes Dev | 2021 Sep 1 | https://www.ncbi.nlm.nih.gov/pubmed/34413137 |
| High-efficiency purification of divergent AAV serotypes using AAVX affinity chromatography. | Florea M, Nicolaou F, Pacouret S, Zinn EM, Sanmiguel J, Andres-Mateos E, Unzu C, Wagers AJ, Vandenberghe LH | Molecular therapy. Methods & clinical development | 36654797 | Mol Ther Methods Clin Dev | 2023 Mar 9 | https://www.ncbi.nlm.nih.gov/pubmed/36654797 |
| Quantitative proteomic analysis of extracellular vesicle subgroups isolated by an optimized method combining polymer-based precipitation and size exclusion chromatography. | Martínez-Greene JA, Hernández-Ortega K, Quiroz-Baez R, Resendis-Antonio O, Pichardo-Casas I, Sinclair DA, Budnik B, Hidalgo-Miranda A, Uribe-Querol E, Ramos-Godínez MDP, Martínez-Martínez E | Journal of extracellular vesicles | 33936570 | J Extracell Vesicles | 2021 Apr | https://www.ncbi.nlm.nih.gov/pubmed/33936570 |
| Multiple basal cell carcinomas in a patient with myotonic dystrophy type 1. | Feng J, LaChance A, Sinclair DA, Asgari MM | BMJ case reports | 30852496 | BMJ Case Rep | 2019 Mar 8 | https://www.ncbi.nlm.nih.gov/pubmed/30852496 |
| Nicotinamide mononucleotide (NMN) supplementation rescues cerebromicrovascular endothelial function and neurovascular coupling responses and improves cognitive function in aged mice. | Tarantini S, Valcarcel-Ares MN, Toth P, Yabluchanskiy A, Tucsek Z, Kiss T, Hertelendy P, Kinter M, Ballabh P, Süle Z, Farkas E, Baur JA, Sinclair DA, Csiszar A, Ungvari Z | Redox biology | 31015147 | Redox Biol | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31015147 |
| Voluntary exercise normalizes the proteomic landscape in muscle and brain and improves the phenotype of progeroid mice. | Ross JM, Coppotelli G, Branca RM, Kim KM, Lehtiö J, Sinclair DA, Olson L | Aging cell | 31489782 | Aging Cell | 2019 Dec | https://www.ncbi.nlm.nih.gov/pubmed/31489782 |
| Harvard HIV and Aging Workshop: Perspectives and Priorities from Claude D. Pepper Centers and Centers for AIDS Research. | Montano M, Bhasin S, D'Aquila RT, Erlandson KM, Evans WJ, Funderburg NT, Justice A, Ndhlovu LC, Ojikutu B, Pahor M, Pahwa S, Ryan AS, Schrack J, Schultz MB, Sebastiani P, Sinclair DA, Tripp J, Walker B, Womack JA, Yung R, Reeves RK | AIDS research and human retroviruses | 31456412 | AIDS Res Hum Retroviruses | 2019 Nov-Dec | https://www.ncbi.nlm.nih.gov/pubmed/31456412 |
| NAD(+) in Brain Aging and Neurodegenerative Disorders. | Lautrup S, Sinclair DA, Mattson MP, Fang EF | Cell metabolism | 31577933 | Cell Metab | 2019 Oct 1 | https://www.ncbi.nlm.nih.gov/pubmed/31577933 |
| Barrier-to-autointegration factor 1 (Banf1) regulates poly [ADP-ribose] polymerase 1 (PARP1) activity following oxidative DNA damage. | Bolderson E, Burgess JT, Li J, Gandhi NS, Boucher D, Croft LV, Beard S, Plowman JJ, Suraweera A, Adams MN, Naqi A, Zhang SD, Sinclair DA, O'Byrne KJ, Richard DJ | Nature communications | 31796734 | Nat Commun | 2019 Dec 3 | https://www.ncbi.nlm.nih.gov/pubmed/31796734 |
| Frailty biomarkers in humans and rodents: Current approaches and future advances. | Kane AE, Sinclair DA | Mechanisms of ageing and development | 31002925 | Mech Ageing Dev | 2019 Jun | https://www.ncbi.nlm.nih.gov/pubmed/31002925 |
| Impacts of obesity, maternal obesity and nicotinamide mononucleotide supplementation on sperm quality in mice. | Youngson NA, Uddin GM, Das A, Martinez C, Connaughton HS, Whiting S, Yu J, Sinclair DA, Aitken RJ, Morris MJ | Reproduction (Cambridge, England) | 31226694 | Reproduction | 2019 Aug 1 | https://www.ncbi.nlm.nih.gov/pubmed/31226694 |
| Impairment of an Endothelial NAD(+)-H(2)S Signaling Network Is a Reversible Cause of Vascular Aging. | Das A, Huang GX, Bonkowski MS, Longchamp A, Li C, Schultz MB, Kim LJ, Osborne B, Joshi S, Lu Y, Treviño-Villarreal JH, Kang MJ, Hung TT, Lee B, Williams EO, Igarashi M, Mitchell JR, Wu LE, Turner N, Arany Z, Guarente L, Sinclair DA | Cell | 29570999 | Cell | 2018 Mar 22 | https://www.ncbi.nlm.nih.gov/pubmed/29570999 |
| Epigenetic changes during aging and their reprogramming potential. | Kane AE, Sinclair DA | Critical reviews in biochemistry and molecular biology | 30822165 | Crit Rev Biochem Mol Biol | 2019 Feb | https://www.ncbi.nlm.nih.gov/pubmed/30822165 |
| Dynamic Acetylation of Phosphoenolpyruvate Carboxykinase Toggles Enzyme Activity between Gluconeogenic and Anaplerotic Reactions. | Latorre-Muro P, Baeza J, Armstrong EA, Hurtado-Guerrero R, Corzana F, Wu LE, Sinclair DA, López-Buesa P, Carrodeguas JA, Denu JM | Molecular cell | 30193097 | Mol Cell | 2018 Sep 6 | https://www.ncbi.nlm.nih.gov/pubmed/30193097 |
| Sirtuins and NAD(+) in the Development and Treatment of Metabolic and Cardiovascular Diseases. | Kane AE, Sinclair DA | Circulation research | 30355082 | Circ Res | 2018 Sep 14 | https://www.ncbi.nlm.nih.gov/pubmed/30355082 |
| Mitohormesis and metabolic health: The interplay between ROS, cAMP and sirtuins. | Palmeira CM, Teodoro JS, Amorim JA, Steegborn C, Sinclair DA, Rolo AP | Free radical biology & medicine | 31349039 | Free Radic Biol Med | 2019 Sep | https://www.ncbi.nlm.nih.gov/pubmed/31349039 |
| Molecular and Cellular Characterization of SIRT1 Allosteric Activators. | Schultz MB, Rinaldi C, Lu Y, Amorim JA, Sinclair DA | Methods in molecular biology (Clifton, N.J.) | 31087296 | Methods Mol Biol | 2019 | https://www.ncbi.nlm.nih.gov/pubmed/31087296 |
| Resveratrol Improves Vascular Function and Mitochondrial Number but Not Glucose Metabolism in Older Adults. | Pollack RM, Barzilai N, Anghel V, Kulkarni AS, Golden A, O'Broin P, Sinclair DA, Bonkowski MS, Coleville AJ, Powell D, Kim S, Moaddel R, Stein D, Zhang K, Hawkins M, Crandall JP | The journals of gerontology. Series A, Biological sciences and medical sciences | 28329397 | J Gerontol A Biol Sci Med Sci | 2017 Nov 9 | https://www.ncbi.nlm.nih.gov/pubmed/28329397 |
| Multigenerational obesity-induced perturbations in oocyte-secreted factor signalling can be ameliorated by exercise and nicotinamide mononucleotide. | Bertoldo MJ, Uddin GM, Youngson NA, Agapiou D, Walters KA, Sinclair DA, Morris MJ, Gilchrist RB | Human reproduction open | 30895251 | Hum Reprod Open | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30895251 |
| Comparing the Effects of Low-Protein and High-Carbohydrate Diets and Caloric Restriction on Brain Aging in Mice. | Wahl D, Solon-Biet SM, Wang QP, Wali JA, Pulpitel T, Clark X, Raubenheimer D, Senior AM, Sinclair DA, Cooney GJ, de Cabo R, Cogger VC, Simpson SJ, Le Couteur DG | Cell reports | 30463018 | Cell Rep | 2018 Nov 20 | https://www.ncbi.nlm.nih.gov/pubmed/30463018 |
| Publisher Correction: Longitudinal analysis of biomarker data from a personalized nutrition platform in healthy subjects. | Westerman K, Reaver A, Roy C, Ploch M, Sharoni E, Nogal B, Sinclair DA, Katz DL, Blumberg JB, Blander G | Scientific reports | 30405144 | Sci Rep | 2018 Nov 8 | https://www.ncbi.nlm.nih.gov/pubmed/30405144 |
| Assays for NAD(+)-Dependent Reactions and NAD(+) Metabolites. | Schultz MB, Lu Y, Braidy N, Sinclair DA | Methods in molecular biology (Clifton, N.J.) | 30097862 | Methods Mol Biol | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30097862 |
| Targeting mitochondria for cardiovascular disorders: therapeutic potential and obstacles. | Bonora M, Wieckowski MR, Sinclair DA, Kroemer G, Pinton P, Galluzzi L | Nature reviews. Cardiology | 30177752 | Nat Rev Cardiol | 2019 Jan | https://www.ncbi.nlm.nih.gov/pubmed/30177752 |
| Longitudinal analysis of biomarker data from a personalized nutrition platform in healthy subjects. | Westerman K, Reaver A, Roy C, Ploch M, Sharoni E, Nogal B, Sinclair DA, Katz DL, Blumberg JB, Blander G | Scientific reports | 30279436 | Sci Rep | 2018 Oct 2 | https://www.ncbi.nlm.nih.gov/pubmed/30279436 |
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| The transcriptome of the bowhead whale Balaena mysticetus reveals adaptations of the longest-lived mammal. | Seim I, Ma S, Zhou X, Gerashchenko MV, Lee SG, Suydam R, George JC, Bickham JW, Gladyshev VN | Aging | 25411232 | Aging (Albany NY) | 2014 Oct | https://www.ncbi.nlm.nih.gov/pubmed/25411232 |
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| Ameliorating treatment-refractory depression with intranasal ketamine: potential NMDA receptor actions in the pain circuitry representing mental anguish. | Opler LA, Opler MG, Arnsten AF | CNS spectrums | 25619798 | CNS Spectr | 2016 Feb | https://www.ncbi.nlm.nih.gov/pubmed/25619798 |
| Targeting Prefrontal Cortical Systems for Drug Development: Potential Therapies for Cognitive Disorders. | Arnsten AF, Wang M | Annual review of pharmacology and toxicology | 26738476 | Annu Rev Pharmacol Toxicol | 2016 | https://www.ncbi.nlm.nih.gov/pubmed/26738476 |
| The aged rhesus macaque manifests Braak stage III/IV Alzheimer's-like pathology. | Paspalas CD, Carlyle BC, Leslie S, Preuss TM, Crimins JL, Huttner AJ, van Dyck CH, Rosene DL, Nairn AC, Arnsten AFT | Alzheimer's & dementia : the journal of the Alzheimer's Association | 29241829 | Alzheimers Dement | 2018 May | https://www.ncbi.nlm.nih.gov/pubmed/29241829 |
| Unique Molecular Regulation of Higher-Order Prefrontal Cortical Circuits: Insights into the Neurobiology of Schizophrenia. | Datta D, Arnsten AFT | ACS chemical neuroscience | 29470055 | ACS Chem Neurosci | 2018 Sep 19 | https://www.ncbi.nlm.nih.gov/pubmed/29470055 |
| Hypothesis: Tau pathology is an initiating factor in sporadic Alzheimer's disease. | Arnsten AFT, Datta D, Del Tredici K, Braak H | Alzheimer's & dementia : the journal of the Alzheimer's Association | 33075193 | Alzheimers Dement | 2021 Jan | https://www.ncbi.nlm.nih.gov/pubmed/33075193 |
| Classical complement cascade initiating C1q protein within neurons in the aged rhesus macaque dorsolateral prefrontal cortex. | Datta D, Leslie SN, Morozov YM, Duque A, Rakic P, van Dyck CH, Nairn AC, Arnsten AFT | Journal of neuroinflammation | 31906973 | J Neuroinflammation | 2020 Jan 6 | https://www.ncbi.nlm.nih.gov/pubmed/31906973 |
| Studies of aging nonhuman primates illuminate the etiology of early-stage Alzheimer's-like neuropathology: An evolutionary perspective. | Arnsten AFT, Datta D, Preuss TM | American journal of primatology | 33960505 | Am J Primatol | 2021 Nov | https://www.ncbi.nlm.nih.gov/pubmed/33960505 |
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| cAMP-PKA phosphorylation of tau confers risk for degeneration in aging association cortex. | Carlyle BC, Nairn AC, Wang M, Yang Y, Jin LE, Simen AA, Ramos BP, Bordner KA, Craft GE, Davies P, Pletikos M, Šestan N, Arnsten AF, Paspalas CD | Proceedings of the National Academy of Sciences of the United States of America | 24707050 | Proc Natl Acad Sci U S A | 2014 Apr 1 | https://www.ncbi.nlm.nih.gov/pubmed/24707050 |
| Mapping Phosphodiesterase 4D (PDE4D) in Macaque Dorsolateral Prefrontal Cortex: Postsynaptic Compartmentalization in Layer III Pyramidal Cell Circuits. | Datta D, Enwright JF, Arion D, Paspalas CD, Morozov YM, Lewis DA, Arnsten AFT | Frontiers in neuroanatomy | 33328902 | Front Neuroanat | 2020 | https://www.ncbi.nlm.nih.gov/pubmed/33328902 |
| Evolution in Neuromodulation-The Differential Roles of Acetylcholine in Higher Order Association vs. Primary Visual Cortices. | Galvin VC, Arnsten AFT, Wang M | Frontiers in neural circuits | 30210306 | Front Neural Circuits | 2018 | https://www.ncbi.nlm.nih.gov/pubmed/30210306 |
| Persistent Spiking Activity Underlies Working Memory. | Constantinidis C, Funahashi S, Lee D, Murray JD, Qi XL, Wang M, Arnsten AFT | The Journal of neuroscience : the official journal of the Society for Neuroscience | 30089641 | J Neurosci | 2018 Aug 8 | https://www.ncbi.nlm.nih.gov/pubmed/30089641 |
| Interrogating the Etiology of Sporadic Alzheimer's Disease Using Aging Rhesus Macaques: Cellular, Molecular, and Cortical Circuitry Perspectives. | Datta D | The journals of gerontology. Series A, Biological sciences and medical sciences | 37279946 | J Gerontol A Biol Sci Med Sci | 2023 Aug 27 | https://www.ncbi.nlm.nih.gov/pubmed/37279946 |
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| Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage. | Dulken BW, Leeman DS, Boutet SC, Hebestreit K, Brunet A | Cell reports | 28099854 | Cell Rep | 2017 Jan 17 | https://www.ncbi.nlm.nih.gov/pubmed/28099854 |
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