NIH Director's Pioneer Award
NIH Director's Pioneer Award
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Authors | Journal | PubMedID | Publication Date |
|---|---|---|---|---|
| How a speaker herds the audience: Multi-brain neural convergence over time during naturalistic storytelling. | Chang, Claire H C; Nastase, Samuel A; Hasson, Uri | bioRxiv : the preprint server for biology | 37873125 | 2024 Jan 21 |
| Efficient evolution of human antibodies from general protein language models. | Hie, Brian L; Shanker, Varun R; Xu, Duo; Bruun, Theodora U J; Weidenbacher, Payton A; Tang, Shaogeng; Wu, Wesley; Pak, John E; Kim, Peter S | Nature biotechnology | 37095349 | 2024 Feb |
| PhyloVelo enhances transcriptomic velocity field mapping using monotonically expressed genes. | Wang, Kun; Hou, Liangzhen; Wang, Xin; Zhai, Xiangwei; Lu, Zhaolian; Zi, Zhike; Zhai, Weiwei; He, Xionglei; Curtis, Christina; Zhou, Da; Hu, Zheng | Nature biotechnology | 37524958 | 2024 May |
| Shortwave-infrared-light-emitting probes for the in vivo tracking of cancer vaccines and the elicited immune responses. | Ren, Fuqiang; Wang, Feifei; Baghdasaryan, Ani; Li, Ying; Liu, Haoran; Hsu, RuSiou; Wang, Chuchu; Li, Jiachen; Zhong, Yeteng; Salazar, Felix; Xu, Chun; Jiang, Yingying; Ma, Zhuoran; Zhu, Guanzhou; Zhao, Xiang; Wong, Kerry Kaili; Willis, Richard; Christopher Garcia, K; Wu, Anna; Mellins, Elizabeth; Dai, Hongjie | Nature biomedical engineering | 37620621 | 2024 Jun |
| The FXR1 network acts as signaling scaffold for actomyosin remodeling. | Chen, Xiuzhen; Fansler, Mervin M; Janjoš, Urška; Ule, Jernej; Mayr, Christine | bioRxiv : the preprint server for biology | 37961296 | 2024 May 25 |
| Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopy. | Guo, Min; Wu, Yicong; Hobson, Chad M; Su, Yijun; Qian, Shuhao; Krueger, Eric; Christensen, Ryan; Kroeschell, Grant; Bui, Johnny; Chaw, Matthew; Zhang, Lixia; Liu, Jiamin; Hou, Xuekai; Han, Xiaofei; Lu, Zhiye; Ma, Xuefei; Zhovmer, Alexander; Combs, Christian; Moyle, Mark; Yemini, Eviatar; Liu, Huafeng; Liu, Zhiyi; Benedetto, Alexandre; La Riviere, Patrick; Colón-Ramos, Daniel; Shroff, Hari | bioRxiv : the preprint server for biology | 37986950 | 2024 Jul 15 |
| Adaptation of CD4 in gorillas and chimpanzees conveyed resistance to simian immunodeficiency viruses. | Warren, Cody J; Barbachano-Guerrero, Arturo; Bauer, Vanessa L; Stabell, Alex C; Dirasantha, Obaiah; Yang, Qing; Sawyer, Sara L | bioRxiv : the preprint server for biology | 38014262 | 2024 Mar 25 |
| Detecting organelle-specific activity of potassium channels with a DNA nanodevice. | Anees, Palapuravan; Saminathan, Anand; Rozmus, Ezekiel R; Di, Anke; Malik, Asrar B; Delisle, Brian P; Krishnan, Yamuna | Nature biotechnology | 37735264 | 2024 Jul |
| A DNA nanodevice for mapping sodium at single-organelle resolution. | Zou, Junyi; Mitra, Koushambi; Anees, Palapuravan; Oettinger, Daphne; Ramirez, Joseph R; Veetil, Aneesh Tazhe; Gupta, Priyanka Dutta; Rao, Rajini; Smith, Jayson J; Kratsios, Paschalis; Krishnan, Yamuna | Nature biotechnology | 37735265 | 2024 Jul |
| Macrophages derived from human induced pluripotent stem cells (iPSCs) serve as a high-fidelity cellular model for investigating HIV-1, dengue, and influenza viruses. | Yang, Qing; Barbachano-Guerrero, Arturo; Fairchild, Laurence M; Rowland, Teisha J; Dowell, Robin D; Allen, Mary A; Warren, Cody J; Sawyer, Sara L | Journal of virology | 38323811 | 2024 Mar 19 |
| A mechanism of lysosomal calcium entry. | Zajac, Matthew; Mukherjee, Sourajit; Anees, Palapuravan; Oettinger, Daphne; Henn, Katharine; Srikumar, Jainaha; Zou, Junyi; Saminathan, Anand; Krishnan, Yamuna | Science advances | 38354239 | 2024 Feb 16 |
| Semantic Clustering during Verbal Episodic Memory Encoding and Retrieval in Older Adults: One Cognitive Mechanism of Superaging. | Shaffer, Clare; Andreano, Joseph M; Touroutoglou, Alexandra; Barrett, Lisa Feldman; Dickerson, Bradford C; Wong, Bonnie | Brain sciences | 38391745 | 2024 Feb 08 |
| Robustness of cancer microbiome signals over a broad range of methodological variation. | Sepich-Poore, Gregory D; McDonald, Daniel; Kopylova, Evguenia; Guccione, Caitlin; Zhu, Qiyun; Austin, George; Carpenter, Carolina; Fraraccio, Serena; Wandro, Stephen; Kosciolek, Tomasz; Janssen, Stefan; Metcalf, Jessica L; Song, Se Jin; Kanbar, Jad; Miller-Montgomery, Sandrine; Heaton, Robert; Mckay, Rana; Patel, Sandip Pravin; Swafford, Austin D; Korem, Tal; Knight, Rob | Oncogene | 38396294 | 2024 Apr |
| Transient cAMP production drives rapid and sustained spiking in brainstem parabrachial neurons to suppress feeding. | Singh Alvarado, Jonnathan; Lutas, Andrew; Madara, Joseph C; Isaac, Jeremiah; Lommer, Caroline; Massengill, Crystian; Andermann, Mark L | Neuron | 38417435 | 2024 May 01 |
| Structurally divergent and recurrently mutated regions of primate genomes. | Mao, Yafei; Harvey, William T; Porubsky, David; Munson, Katherine M; Hoekzema, Kendra; Lewis, Alexandra P; Audano, Peter A; Rozanski, Allison; Yang, Xiangyu; Zhang, Shilong; Yoo, DongAhn; Gordon, David S; Fair, Tyler; Wei, Xiaoxi; Logsdon, Glennis A; Haukness, Marina; Dishuck, Philip C; Jeong, Hyeonsoo; Del Rosario, Ricardo; Bauer, Vanessa L; Fattor, Will T; Wilkerson, Gregory K; Mao, Yuxiang; Shi, Yongyong; Sun, Qiang; Lu, Qing; Paten, Benedict; Bakken, Trygve E; Pollen, Alex A; Feng, Guoping; Sawyer, Sara L; Warren, Wesley C; Carbone, Lucia; Eichler, Evan E | Cell | 38428424 | 2024 Mar 14 |
| Denial-Artificial Intelligence Tools and Health Insurance Coverage Decisions. | Mello, Michelle M; Rose, Sherri | JAMA health forum | 38451493 | 2024 Mar 01 |
| Alcohol for seizure induction in the epilepsy monitoring unit. | Emmert, Brian E; Xie, Kevin; Conrad, Erin C; Ghosn, Nina J; Bauman, Kristie; Korzun, Jacob; Kulick-Soper, Catherine V; Naveed, Omer; Hartmann, Nicole; LaRocque, Joshua J; Mindy Ganguly, Taneeta; Gugger, James J; Raghupathi, Ramya; Gelfand, Michael A; Davis, Kathryn A; Sinha, Saurabh R; Litt, Brian; Shinohara, Russell T; Ellis, Colin A | Epilepsy & behavior : E&B | 38070406 | 2024 Jan |
| Decreasing the intrinsically disordered protein α-synuclein levels by targeting its structured mRNA with a ribonuclease-targeting chimera. | Tong, Yuquan; Zhang, Peiyuan; Yang, Xueyi; Liu, Xiaohui; Zhang, Jie; Grudniewska, Magda; Jung, Ikrak; Abegg, Daniel; Liu, Jun; Childs-Disney, Jessica L; Gibaut, Quentin M R; Haniff, Hafeez S; Adibekian, Alexander; Mouradian, M Maral; Disney, Matthew D | Proceedings of the National Academy of Sciences of the United States of America | 38181056 | 2024 Jan 09 |
| Human coronavirus HKU1 recognition of the TMPRSS2 host receptor. | McCallum, Matthew; Park, Young-Jun; Stewart, Cameron; Sprouse, Kaitlin R; Brown, Jack; Tortorici, M Alejandra; Gibson, Cecily; Wong, Emily; Ieven, Margareta; Telenti, Amalio; Veesler, David | bioRxiv : the preprint server for biology | 38260518 | 2024 Jan 09 |
| Diverse axonal morphologies of individual callosal projection neurons reveal new insights into brain connectivity. | Pal, Suranjana; Lim, Jonathan W C; Richards, Linda J | Current opinion in neurobiology | 38271848 | 2024 Feb |
| Individual deviations from normative electroencephalographic connectivity predict antidepressant response. | Tong, Xiaoyu; Xie, Hua; Wu, Wei; Keller, Corey J; Fonzo, Gregory A; Chidharom, Matthieu; Carlisle, Nancy B; Etkin, Amit; Zhang, Yu | Journal of affective disorders | 38281595 | 2024 Apr 15 |
| Broadly neutralizing antibodies against emerging delta-coronaviruses. | Rexhepaj, Megi; Park, Young-Jun; Perruzza, Lisa; Asarnow, Daniel; Mccallum, Mathew; Culap, Katja; Saliba, Christian; Leoni, Giada; Balmelli, Alessio; Yoshiyama, Courtney N; Dickinson, Miles S; Quispe, Joel; Brown, Jack Taylor; Tortorici, M Alejandra; Sprouse, Kaitlin R; Taylor, Ashley L; Starr, Tyler N; Corti, Davide; Benigni, Fabio; Veesler, David | bioRxiv : the preprint server for biology | 38617231 | 2024 Apr 01 |
| Antiviral Effect of Antimicrobial Peptoid TM9 and Murine Model of Respiratory Coronavirus Infection. | Lebedev, Maxim; Benjamin, Aaron B; Kumar, Sathish; Molchanova, Natalia; Lin, Jennifer S; Koster, Kent J; Leibowitz, Julian L; Barron, Annelise E; Cirillo, Jeffrey D | Pharmaceutics | 38675125 | 2024 Mar 27 |
| Oncogenic Kras induces spatiotemporally specific tissue deformation through converting pulsatile into sustained ERK activation. | Xin, Tianchi; Gallini, Sara; Wei, Haoyang; Gonzalez, David G; Matte-Martone, Catherine; Machida, Hiroki; Fujiwara, Hironobu; Pasolli, H Amalia; Suozzi, Kathleen C; Gonzalez, Lauren E; Regot, Sergi; Greco, Valentina | Nature cell biology | 38689013 | 2024 Jun |
| MASTR-seq: Multiplexed Analysis of Short Tandem Repeats with sequencing. | Su, Chuanbin; Chandradoss, Keerthivasan Raanin; Malachowski, Thomas; Boya, Ravi; Ryu, Han-Seul; Brennand, Kristen J; Phillips-Cremins, Jennifer E | bioRxiv : the preprint server for biology | 38746155 | 2024 May 02 |
| Correction: Cell cycle controls long-range calcium signaling in the regenerating epidermis. | Moore, Jessica L; Bhaskar, Dhananjay; Gao, Feng; Matte-Martone, Catherine; Du, Shuangshuang; Lathrop, Elizabeth; Ganesan, Smirthy; Shao, Lin; Norris, Rachael; Sanz, Nil Campamà; Annusver, Karl; Kasper, Maria; Cox, Andy; Hendry, Caroline; Rieck, Bastian; Krishnaswamy, Smita; Greco, Valentina | The Journal of cell biology | 38477880 | 2024 Apr 01 |
| Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics. | Lundgren, Taylor J; Clark, Patricia L; Champion, Matthew M | Journal of proteome research | 38478054 | 2024 Apr 05 |
| Pf bacteriophages hinder sputum antibiotic diffusion via electrostatic binding. | Chen, Qingquan; Cai, Pam; Chang, Tony Hong Wei; Burgener, Elizabeth; Kratochvil, Michael J; Gupta, Aditi; Hargil, Aviv; Secor, Patrick R; Nielsen, Josefine Eilsø; Barron, Annelise E; Milla, Carlos; Heilshorn, Sarah C; Spakowitz, Andy; Bollyky, Paul L | bioRxiv : the preprint server for biology | 38496625 | 2024 Mar 10 |
| Developmental trajectory of cortical somatostatin interneuron function. | Wang, Alex; Ferguson, Katie A; Gupta, Jyoti; Higley, Michael J; Cardin, Jessica A | bioRxiv : the preprint server for biology | 38496673 | 2024 Mar 07 |
| Alignment of brain embeddings and artificial contextual embeddings in natural language points to common geometric patterns. | Goldstein, Ariel; Grinstein-Dabush, Avigail; Schain, Mariano; Wang, Haocheng; Hong, Zhuoqiao; Aubrey, Bobbi; Schain, Mariano; Nastase, Samuel A; Zada, Zaid; Ham, Eric; Feder, Amir; Gazula, Harshvardhan; Buchnik, Eliav; Doyle, Werner; Devore, Sasha; Dugan, Patricia; Reichart, Roi; Friedman, Daniel; Brenner, Michael; Hassidim, Avinatan; Devinsky, Orrin; Flinker, Adeen; Hasson, Uri | Nature communications | 38553456 | 2024 Mar 30 |
| Social isolation recruits amygdala-cortical circuitry to escalate alcohol drinking. | Patel, Reesha R; Patarino, Makenzie; Kim, Kelly; Pamintuan, Rachelle; Taschbach, Felix H; Li, Hao; Lee, Christopher R; van Hoek, Aniek; Castro, Rogelio; Cazares, Christian; Miranda, Raymundo L; Jia, Caroline; Delahanty, Jeremy; Batra, Kanha; Keyes, Laurel R; Libster, Avraham; Wichmann, Romy; Pereira, Talmo D; Benna, Marcus K; Tye, Kay M | Research square | 38562728 | 2024 Mar 21 |
| Vangl-dependent mesenchymal thinning shapes the distal lung during murine sacculation. | Paramore, Sarah V; Trenado-Yuste, Carolina; Sharan, Rishabh; Nelson, Celeste M; Devenport, Danelle | Developmental cell | 38569553 | 2024 May 20 |
| How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins. | Baxa, Michael C; Lin, Xiaoxuan; Mukinay, Cedrick D; Chakravarthy, Srinivas; Sachleben, Joseph R; Antilla, Sarah; Hartrampf, Nina; Riback, Joshua A; Gagnon, Isabelle A; Pentelute, Bradley L; Clark, Patricia L; Sosnick, Tobin R | Protein science : a publication of the Protein Society | 38607226 | 2024 May |
| Utility of intracranial EEG networks depends on re-referencing and connectivity choice. | Shi, Haoer; Pattnaik, Akash Ranjan; Aguila, Carlos; Lucas, Alfredo; Sinha, Nishant; Prager, Brian; Mojena, Marissa; Gallagher, Ryan; Parashos, Alexandra; Bonilha, Leonardo; Gleichgerrcht, Ezequiel; Davis, Kathryn A; Litt, Brian; Conrad, Erin C | Brain communications | 38799618 | 2024 |
| Aging atlas reveals cell-type-specific effects of pro-longevity strategies. | Gao, Shihong Max; Qi, Yanyan; Zhang, Qinghao; Guan, Youchen; Lee, Yi-Tang; Ding, Lang; Wang, Lihua; Mohammed, Aaron S; Li, Hongjie; Fu, Yusi; Wang, Meng C | Nature aging | 38816550 | 2024 Jul |
| The realization of CRISPR gene therapy. | Ma, Yitong; Qi, Lei S | Nature chemical biology | 38872012 | 2024 Jul |
| FISHnet: Detecting chromatin domains in single-cell sequential Oligopaints imaging data. | Patel, Rohan; Pham, Kenneth; Chandrashekar, Harshini; Phillips-Cremins, Jennifer E | bioRxiv : the preprint server for biology | 38948824 | 2024 Jun 18 |
| Peptide-mimetic treatment of Pseudomonas aeruginosa in a mouse model of respiratory infection. | Moule, Madeleine G; Benjamin, Aaron B; Buger, Melanie L; Herlan, Claudine; Lebedev, Maxim; Lin, Jennifer S; Koster, Kent J; Wavare, Neha; Adams, Leslie G; Bräse, Stefan; Munoz-Medina, Ricardo; Cannon, Carolyn L; Barron, Annelise E; Cirillo, Jeffrey D | Communications biology | 39174819 | 2024 Aug 22 |
| Acid-degradable lipid nanoparticles enhance the delivery of mRNA. | Zhao, Sheng; Gao, Kewa; Han, Hesong; Stenzel, Michael; Yin, Boyan; Song, Hengyue; Lawanprasert, Atip; Nielsen, Josefine Eilsø; Sharma, Rohit; Arogundade, Opeyemi H; Pimcharoen, Sopida; Chen, Yu-Ju; Paul, Abhik; Tuma, Jan; Collins, Michael G; Wyle, Yofiel; Cranick, Matileen Grace; Burgstone, Benjamin W; Perez, Barbara S; Barron, Annelise E; Smith, Andrew M; Lee, Hye Young; Wang, Aijun; Murthy, Niren | Nature nanotechnology | 39179796 | 2024 Aug 23 |
| Synonymous codon substitutions modulate transcription and translation of a divergent upstream gene by modulating antisense RNA production. | Rodriguez, Anabel; Diehl, Jacob D; Wright, Gabriel S; Bonar, Christopher D; Lundgren, Taylor J; Moss, McKenze J; Li, Jun; Milenkovic, Tijana; Huber, Paul W; Champion, Matthew M; Emrich, Scott J; Clark, Patricia L | Proceedings of the National Academy of Sciences of the United States of America | 39190361 | 2024 Sep 03 |
| Protocol for Imaging the Same Class IV Neurons at Different Stages of Development. | Shree, Sonal; Howard, Jonathon | Bio-protocol | 39210953 | 2024 Aug 20 |
| Human cell surface-AAV interactomes identify LRP6 as blood-brain barrier transcytosis receptor and immune cytokine IL3 as AAV9 binder. | Shay, Timothy F; Jang, Seongmin; Brittain, Tyler J; Chen, Xinhong; Walker, Beth; Tebbutt, Claire; Fan, Yujie; Wolfe, Damien A; Arokiaraj, Cynthia M; Sullivan, Erin E; Ding, Xiaozhe; Wang, Ting-Yu; Lei, Yaping; Chuapoco, Miguel R; Chou, Tsui-Fen; Gradinaru, Viviana | Nature communications | 39245720 | 2024 Sep 08 |
| Structure and sequence at an RNA template 5' end influence insertion of transgenes by an R2 retrotransposon protein. | Palm, Sarah M; Horton, Connor A; Zhang, Xiaozhu; Collins, Kathleen | RNA (New York, N.Y.) | 38960642 | 2024 Aug 16 |
| Control of innate olfactory valence by segregated cortical amygdala circuits. | Howe, James R; Chan, Chung-Lung; Lee, Donghyung; Blanquart, Marlon; Romero, Haylie K; Zadina, Abigail N; Lemieux, Mackenzie E; Mills, Fergil; Desplats, Paula A; Tye, Kay M; Root, Cory M | bioRxiv : the preprint server for biology | 38979308 | 2024 Jul 04 |
| The FXR1 network acts as a signaling scaffold for actomyosin remodeling. | Chen, Xiuzhen; Fansler, Mervin M; Janjoš, Urška; Ule, Jernej; Mayr, Christine | Cell | 39106863 | 2024 Sep 05 |
| ISGylation of the SARS-CoV-2 N protein by HERC5 impedes N oligomerization and thereby viral RNA synthesis. | Zhu, Junji; Liu, GuanQun; Goins, Christopher M; Stauffer, Shaun R; Gack, Michaela U | bioRxiv : the preprint server for biology | 39149229 | 2024 May 20 |
| Overall, Direct, Spillover, and Composite Effects of Components of a Peer-Driven Intervention Package on Injection Risk Behavior Among People Who Inject Drugs in the HPTN 037 Study. | Hernández-Ramírez, Raúl U; Spiegelman, Donna; Lok, Judith J; Forastiere, Laura; Friedman, Samuel R; Latkin, Carl A; Vermund, Sten H; Buchanan, Ashley L | AIDS and behavior | 37932493 | 2024 Jan |
| The activity of antimicrobial peptoids against multidrug-resistant ocular pathogens. | Sara, Manjulatha; Yasir, Muhammad; Kalaiselvan, Parthasarathi; Hui, Alex; Kuppusamy, Rajesh; Kumar, Naresh; Chakraborty, Sudip; Yu, Tsz Tin; Wong, Edgar H H; Molchanova, Natalia; Jenssen, Håvard; Lin, Jennifer S; Barron, Annelise E; Willcox, Mark | Contact lens & anterior eye : the journal of the British Contact Lens Association | 38341309 | 2024 Apr |
| A vagal reflex evoked by airway closure. | Schappe, Michael S; Brinn, Philip A; Joshi, Narendra R; Greenberg, Rachel S; Min, Soohong; Alabi, AbdulRasheed A; Zhang, Chuchu; Liberles, Stephen D | Nature | 38448588 | 2024 Mar |
| Dissection of a CTCF topological boundary uncovers principles of enhancer-oncogene regulation. | Kim, Kyung Lock; Rahme, Gilbert J; Goel, Viraat Y; El Farran, Chadi A; Hansen, Anders S; Bernstein, Bradley E | Molecular cell | 38452764 | 2024 Apr 04 |
| Intratumor injected gold molecular clusters for NIR-II imaging and cancer therapy. | Baghdasaryan, Ani; Liu, Haoran; Ren, Fuqiang; Hsu, RuSiou; Jiang, Yingying; Wang, Feifei; Zhang, Mengzhen; Grigoryan, Lilit; Dai, Hongjie | Proceedings of the National Academy of Sciences of the United States of America | 38261618 | 2024 Jan 30 |
| Molecular robotic agents that survey molecular landscapes for information retrieval. | Woo, Sungwook; Saka, Sinem K; Xuan, Feng; Yin, Peng | Nature communications | 38632239 | 2024 Apr 17 |
| Temporal multiplexing of perception and memory codes in IT cortex. | She, Liang; Benna, Marcus K; Shi, Yuelin; Fusi, Stefano; Tsao, Doris Y | Nature | 38750353 | 2024 May |
| Nf1 mutation disrupts activity-dependent oligodendroglial plasticity and motor learning in mice. | Pan, Yuan; Hysinger, Jared D; Yalçın, Belgin; Lennon, James J; Byun, Youkyeong Gloria; Raghavan, Preethi; Schindler, Nicole F; Anastasaki, Corina; Chatterjee, Jit; Ni, Lijun; Xu, Haojun; Malacon, Karen; Jahan, Samin M; Ivec, Alexis E; Aghoghovwia, Benjamin E; Mount, Christopher W; Nagaraja, Surya; Scheaffer, Suzanne; Attardi, Laura D; Gutmann, David H; Monje, Michelle | Nature neuroscience | 38816530 | 2024 Aug |
| High-dimensional multi-pass flow cytometry via spectrally encoded cellular barcoding. | Kwok, Sheldon J J; Forward, Sarah; Fahlberg, Marissa D; Assita, Emane Rose; Cosgriff, Sean; Lee, Seung Hyung; Abbott, Geoffrey R; Zhu, Han; Minasian, Nicolas H; Vote, A Sean; Martino, Nicola; Yun, Seok-Hyun | Nature biomedical engineering | 38036616 | 2024 Mar |
| Template and target-site recognition by human LINE-1 in retrotransposition. | Thawani, Akanksha; Ariza, Alfredo Jose Florez; Nogales, Eva; Collins, Kathleen | Nature | 38096901 | 2024 Feb |
| Optimizing Temporal Waveform Analysis: A Novel Pipeline for Efficient Characterization of Left Coronary Artery Velocity Profiles. | Geddes, Justen R; Randles, Amanda | ArXiv | 38410654 | 2024 Feb 15 |
| The Cousa objective: a long-working distance air objective for multiphoton imaging in vivo. | Yu, Che-Hang; Yu, Yiyi; Adsit, Liam M; Chang, Jeremy T; Barchini, Jad; Moberly, Andrew H; Benisty, Hadas; Kim, Jinkyung; Young, Brent K; Heng, Kathleen; Farinella, Deano M; Leikvoll, Austin; Pavan, Rishaab; Vistein, Rachel; Nanfito, Brandon R; Hildebrand, David G C; Otero-Coronel, Santiago; Vaziri, Alipasha; Goldberg, Jeffrey L; Ricci, Anthony J; Fitzpatrick, David; Cardin, Jessica A; Higley, Michael J; Smith, Gordon B; Kara, Prakash; Nielsen, Kristina J; Smith, Ikuko T; Smith, Spencer LaVere | Nature methods | 38129618 | 2024 Jan |
| Fibroblast growth factor 8b (FGF-8b) enhances myogenesis and inhibits adipogenesis in rotator cuff muscle cell populations in vitro. | Otsuka, Takayoshi; Kan, Ho-Man; Mengsteab, Paulos Y; Tyson, Breajah; Laurencin, Cato T | Proceedings of the National Academy of Sciences of the United States of America | 38147545 | 2024 Jan 02 |
| Mixed selectivity: Cellular computations for complexity. | Tye, Kay M; Miller, Earl K; Taschbach, Felix H; Benna, Marcus K; Rigotti, Mattia; Fusi, Stefano | Neuron | 38729151 | 2024 Jul 17 |
| A prognostic neural epigenetic signature in high-grade glioma. | Drexler, Richard; Khatri, Robin; Sauvigny, Thomas; Mohme, Malte; Maire, Cecile L; Ryba, Alice; Zghaibeh, Yahya; Dührsen, Lasse; Salviano-Silva, Amanda; Lamszus, Katrin; Westphal, Manfred; Gempt, Jens; Wefers, Annika K; Neumann, Julia E; Bode, Helena; Hausmann, Fabian; Huber, Tobias B; Bonn, Stefan; Jütten, Kerstin; Delev, Daniel; Weber, Katharina J; Harter, Patrick N; Onken, Julia; Vajkoczy, Peter; Capper, David; Wiestler, Benedikt; Weller, Michael; Snijder, Berend; Buck, Alicia; Weiss, Tobias; Göller, Pauline C; Sahm, Felix; Menstel, Joelle Aline; Zimmer, David Niklas; Keough, Michael B; Ni, Lijun; Monje, Michelle; Silverbush, Dana; Hovestadt, Volker; Suvà, Mario L; Krishna, Saritha; Hervey-Jumper, Shawn L; Schüller, Ulrich; Heiland, Dieter H; Hänzelmann, Sonja; Ricklefs, Franz L | Nature medicine | 38760585 | 2024 Jun |
| Chronic hypoxia remodels the tumor microenvironment to support glioma stem cell growth. | Nicholson, J G; Cirigliano, S; Singhania, R; Haywood, C; Shahidi Dadras, M; Yoshimura, M; Vanderbilt, D; Liechty, B; Fine, H A | Acta neuropathologica communications | 38528608 | 2024 Mar 25 |
| MICA-specific nanobodies for diagnosis and immunotherapy of MICA+ tumors. | Verhaar, Elisha R; Knoflook, Anouk; Pishesha, Novalia; Liu, Xin; van Keizerswaard, Willemijn J C; Wucherpfennig, Kai W; Ploegh, Hidde L | Frontiers in immunology | 38550583 | 2024 |
| Structure and design of Langya virus glycoprotein antigens. | Wang, Zhaoqian; McCallum, Matthew; Yan, Lianying; Gibson, Cecily A; Sharkey, William; Park, Young-Jun; Dang, Ha V; Amaya, Moushimi; Person, Ashley; Broder, Christopher C; Veesler, David | Proceedings of the National Academy of Sciences of the United States of America | 38593070 | 2024 Apr 16 |
| Computationally designed mRNA-launched protein nanoparticle vaccines. | Hendricks, Grace G; Grigoryan, Lilit; Navarro, Mary Jane; Catanzaro, Nicholas J; Hubbard, Miranda L; Powers, John M; Mattocks, Melissa; Treichel, Catherine; Walls, Alexandra C; Lee, Jimin; Ellis, Daniel; Wang, Jing Yang John; Cheng, Suna; Miranda, Marcos C; Valdez, Adian; Chao, Cara W; Chan, Sidney; Men, Christine; Johnson, Max R; Hui, Harold; Wu, Sheng-Yang; Lujan, Victor; Muramatsu, Hiromi; Lin, Paulo J C; Sung, Molly M H; Tam, Ying K; Leaf, Elizabeth M; Pardi, Norbert; Baric, Ralph S; Pulendran, Bali; Veesler, David; Schäfer, Alexandra; King, Neil P | bioRxiv : the preprint server for biology | 39091730 | 2024 Jul 23 |
| Bi-specific antibody engagers for cancer immunotherapy. | Ploegh, Hidde; Liu, Xin; Le Gall, Camille; Alexander, Ryan; Borgman, Ella; Balligand, Thomas | Research square | 39149504 | 2024 Aug 01 |
| Horizontal gene transfer and beyond: the delivery of biological matter by bacterial membrane vesicles to host and bacterial cells. | Wen, Alice X; Herman, Christophe | Current opinion in microbiology | 39190937 | 2024 Oct |
| ISGylation of the SARS-CoV-2 N protein by HERC5 impedes N oligomerization and thereby viral RNA synthesis. | Zhu, Junji; Liu, GuanQun; Sayyad, Zuberwasim; Goins, Christopher M; Stauffer, Shaun R; Gack, Michaela U | Journal of virology | 39194248 | 2024 Sep 17 |
| H-Ras induces exuberant de novo dendritic protrusion growth in mature neurons regardless of cell type. | Krüssel, Sarah; Deb, Ishana; Son, Seungkyu; Ewall, Gabrielle; Chang, Minhyeok; Lee, Hey-Kyoung; Heo, Won Do; Kwon, Hyung-Bae | iScience | 39220408 | 2024 Aug 16 |
| Greengenes2 unifies microbial data in a single reference tree. | McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T; Nicolaou, Giorgia; Parks, Donovan H; Karst, Søren M; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob | Nature biotechnology | 37500913 | 2024 May |
| Specific and comprehensive genetic targeting reveals brain-wide distribution and synaptic input patterns of GABAergic axo-axonic interneurons. | Raudales, Ricardo; Kim, Gukhan; Kelly, Sean M; Hatfield, Joshua; Guan, Wuqiang; Zhao, Shengli; Paul, Anirban; Qian, Yongjun; Li, Bo; Huang, Z Josh | bioRxiv : the preprint server for biology | 37986757 | 2024 Mar 25 |
| Reward contingency gates selective cholinergic suppression of amygdala neurons. | Kimchi, Eyal Y; Burgos-Robles, Anthony; Matthews, Gillian A; Chakoma, Tatenda; Patarino, Makenzie; Weddington, Javier C; Siciliano, Cody; Yang, Wannan; Foutch, Shaun; Simons, Renee; Fong, Ming-Fai; Jing, Miao; Li, Yulong; Polley, Daniel B; Tye, Kay M | eLife | 38376907 | 2024 Feb 20 |
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| Sensitization of meningeal afferents to locomotion-related meningeal deformations in a migraine model. | Blaeser, Andrew S; Zhao, Jun; Sugden, Arthur U; Carneiro-Nascimento, Simone; Andermann, Mark L; Levy, Dan | eLife | 38329894 | 2024 Feb 08 |
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| Pseudomonas fluorescens 15 small RNA Pfs1 mediates transgenerational epigenetic inheritance of pathogen avoidance in C. elegans through the Ephrin receptor VAB-1. | Seto, Renee; Brown, Rachel; Kaletsky, Rachel; Parsons, Lance R; Moore, Rebecca S; Murphy, Coleen T | bioRxiv : the preprint server for biology | 38826453 | 2024 May 23 |
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| TRIM32 inhibits Venezuelan Equine Encephalitis Virus Infection by targeting a late step in viral entry. | Xie, Yifan; Cao, Jie; Gan, Shuyi; Xu, Lingdong; Zhang, Dongjie; Qian, Suhong; Xu, Feng; Ding, Qiang; Schoggins, John W; Fan, Wenchun | bioRxiv : the preprint server for biology | 38895352 | 2024 Jun 04 |
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| Quantitative 3D histochemistry reveals region-specific amyloid-β reduction by the antidiabetic drug netoglitazone. | Catto, Francesca; Dadgar-Kiani, Ehsan; Kirschenbaum, Daniel; Economides, Athena; Reuss, Anna Maria; Trevisan, Chiara; Caredio, Davide; Mirzet, Delic; Frick, Lukas; Weber-Stadlbauer, Ulrike; Litvinov, Sergey; Koumoutsakos, Petros; Hyung Lee, Jin; Aguzzi, Adriano | bioRxiv : the preprint server for biology | 39185170 | 2024 Aug 17 |
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| Postnatal isl1+ cardioblasts enter fully differentiated cardiomyocyte lineages. | Laugwitz, Karl-Ludwig; Moretti, Alessandra; Lam, Jason; Gruber, Peter; Chen, Yinhong; Woodard, Sarah; Lin, Li-Zhu; Cai, Chen-Leng; Lu, Min Min; Reth, Michael; Platoshyn, Oleksandr; Yuan, Jason X-J; Evans, Sylvia; Chien, Kenneth R | Nature. | 15703750 | 2005 Feb 10; |
| A combined yeast/bacteria two-hybrid system: development and evaluation. | Serebriiskii, Ilya G; Fang, Rui; Latypova, Ekaterina; Hopkins, Richard; Vinson, Charles; Joung, J Keith; Golemis, Erica A | Molecular & cellular proteomics : MCP | 15781424 | 2005 Jun |
| Exact theory of kinkable elastic polymers. | Wiggins, Paul A; Phillips, Rob; Nelson, Philip C | Physical review. E, Statistical, nonlinear, and soft matter physics | 15783354 | 2005 Feb |
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| Transcriptional regulation by the numbers: applications. | Bintu, Lacramioara; Buchler, Nicolas E; Garcia, Hernan G; Gerland, Ulrich; Hwa, Terence; Kondev, Jane; Kuhlman, Thomas; Phillips, Rob | Current opinion in genetics & development | 15797195 | 2005 Apr |
| T-box genes coordinate regional rates of proliferation and regional specification during cardiogenesis. | Cai, Chen-Leng; Zhou, Wenlai; Yang, Lei; Bu, Lei; Qyang, Yibing; Zhang, Xiaoxue; Li, Xiaodong; Rosenfeld, Michael G; Chen, Ju; Evans, Sylvia | Development (Cambridge, England). | 15843407 | 2005 May; |
| Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosa. | Vallet-Gely, Isabelle; Donovan, Katherine E; Fang, Rui; Joung, J Keith; Dove, Simon L | Proceedings of the National Academy of Sciences of the United States of America | 16043713 | 2005 Aug 2 |
| Increased circulating interleukin-7 levels in HIV-1-infected women. | Napolitano, Laura A; Burt, Trevor D; Bacchetti, Peter; Barrón, Yolanda; French, Audrey L; Kovacs, Andrea; Anastos, Kathryn; Young, Mary; McCune, Joseph M; Greenblatt, Ruth M | Journal of acquired immune deficiency syndromes (1999). | 16284535 | 2005 Dec 15; |
| Neural correlates of attention and distractibility in the lateral intraparietal area. | Bisley, James W; Goldberg, Michael E | Journal of neurophysiology. | 16339000 | 2006 Mar; |
| The effect of genome length on ejection forces in bacteriophage lambda. | Grayson, Paul; Evilevitch, Alex; Inamdar, Mandar M; Purohit, Prashant K; Gelbart, William M; Knobler, Charles M; Phillips, Rob | Virology | 16469346 | 2006 May 10 |
| Multipole plasmon resonances in gold nanorods. | Payne, Emma Kathryn; Shuford, Kevin L; Park, Sungho; Schatz, George C; Mirkin, Chad A | The journal of physical chemistry. B | 16471797 | 2006 Feb 9 |
| Counter-selectable marker for bacterial-based interaction trap systems. | Meng, Xiangdong; Smith, Robin M; Giesecke, Astrid V; Joung, J Keith; Wolfe, Scot A | BioTechniques | 16526407 | 2006 Feb |
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| Isl1Cre reveals a common Bmp pathway in heart and limb development. | Yang, Lei; Cai, Chen-Leng; Lin, Lizhu; Qyang, Yibing; Chung, Christine; Monteiro, Rui M; Mummery, Christine L; Fishman, Glenn I; Cogen, Anna; Evans, Sylvia | Development (Cambridge, England). | 16556916 | 2006 Apr; |
| Volume-exclusion effects in tethered-particle experiments: bead size matters. | Segall, Darren E; Nelson, Philip C; Phillips, Rob | Physical review letters | 16606235 | 2006 Mar 3 |
| A gold nanoparticle based approach for screening triplex DNA binders. | Han, Min Su; Lytton-Jean, Abigail K R; Mirkin, Chad A | Journal of the American Chemical Society | 16608320 | 2006 Apr 19 |
| Enhanced signals and fast nucleic acid hybridization by microfluidic chaotic mixing. | Liu, Jian; Williams, Brian A; Gwirtz, Richele M; Wold, Barbara J; Quake, Stephen | Angewandte Chemie (International ed. in English) | 16639763 | 2006 May 26 |
| Regulation of T cell responses in the developing human fetus. | Michaelsson, Jakob; Mold, Jeff E; McCune, Joseph M; Nixon, Douglas F | Journal of immunology (Baltimore, Md. : 1950) | 16670279 | 2006 May 15 |
| Dynamics of DNA ejection from bacteriophage. | Inamdar, Mandar M; Gelbart, William M; Phillips, Rob | Biophysical journal | 16679360 | 2006 Jul 15 |
| Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers. | Giesecke, Astrid V; Fang, Rui; Joung, J Keith | Molecular systems biology | 16732192 | 2006 |
| Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates. | Rizk, Shahir S; Cuneo, Matthew J; Hellinga, Homme W | Protein science : a publication of the Protein Society | 16751609 | 2006 Jul |
| Binding and signaling of surface-immobilized reagentless fluorescent biosensors derived from periplasmic binding proteins. | de Lorimier, Robert M; Tian, Yaji; Hellinga, Homme W | Protein science : a publication of the Protein Society | 16823040 | 2006 Aug |
| Pitx2 regulates cardiac left-right asymmetry by patterning second cardiac lineage-derived myocardium. | Ai, Di; Liu, Wei; Ma, Lijiang; Dong, Feiyan; Lu, Mei-Fang; Wang, Degang; Verzi, Michael P; Cai, Chenleng; Gage, Philip J; Evans, Sylvia; Black, Brian L; Brown, Nigel A; Martin, James F | Developmental biology. | 16836994 | 2006 Aug 15; |
| Asymmetric functionalization of gold nanoparticles with oligonucleotides. | Xu, Xiaoyang; Rosi, Nathaniel L; Wang, Yuhuang; Huo, Fengwei; Mirkin, Chad A | Journal of the American Chemical Society | 16848436 | 2006 Jul 26 |
| The crystal structure of a thermophilic glucose binding protein reveals adaptations that interconvert mono and di-saccharide binding sites. | Cuneo, Matthew J; Changela, Anita; Warren, Joshua J; Beese, Lorena S; Hellinga, Homme W | Journal of molecular biology | 16904687 | 2006 Sep 15 |
| Separation of tricomponent protein mixtures with triblock nanorods. | Oh, Byung-Keun; Park, Sungho; Millstone, Jill E; Lee, Seung Woo; Lee, Ki-Bum; Mirkin, Chad A | Journal of the American Chemical Society | 16953622 | 2006 Sep 13 |
| Prevalence of CXCR4 tropism among antiretroviral-treated HIV-1-infected patients with detectable viremia. | Hunt, Peter W; Harrigan, P Richard; Huang, Wei; Bates, Michael; Williamson, David W; McCune, Joseph M; Price, Richard W; Spudich, Serena S; Lampiris, Harry; Hoh, Rebecca; Leigler, Teri; Martin, Jeffrey N; Deeks, Steven G | The Journal of infectious diseases | 16960780 | 2006 Oct 1 |
| Cytotrophoblast induction of arterial apoptosis and lymphangiogenesis in an in vivo model of human placentation. | Red-Horse, Kristy; Rivera, Jose; Schanz, Andrea; Zhou, Yan; Winn, Virginia; Kapidzic, Mirhan; Maltepe, Emin; Okazaki, Kelly; Kochman, Ronit; Vo, Kim Chi; Giudice, Linda; Erlebacher, Adrian; McCune, Joseph M; Stoddart, Cheryl A; Fisher, Susan J | The Journal of clinical investigation | 16998586 | 2006 Oct |
| Dip-pen nanolithography of high-melting-temperature molecules. | Huang, Ling; Chang, Yu-Hsu; Kakkassery, Joseph J; Mirkin, Chad A | The journal of physical chemistry. B | 17048882 | 2006 Oct 26 |
| Direct measurement of T-cell receptor repertoire diversity with AmpliCot. | Baum, Paul D; McCune, Joseph M | Nature methods | 17060913 | 2006 Nov |
| Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity. | Garcia, Hernan G; Grayson, Paul; Han, Lin; Inamdar, Mandar; Kondev, Jane; Nelson, Philip C; Phillips, Rob; Widom, Jonathan; Wiggins, Paul A | Biopolymers | 17103419 | 2007 Feb 5 |
| Increased carotid intima-media thickness in HIV patients is associated with increased cytomegalovirus-specific T-cell responses. | Hsue, Priscilla Y; Hunt, Peter W; Sinclair, Elizabeth; Bredt, Barry; Franklin, Arlana; Killian, Maudi; Hoh, Rebecca; Martin, Jeffrey N; McCune, Joseph M; Waters, David D; Deeks, Steven G | AIDS (London, England) | 17117013 | 2006 Nov 28 |
| T-Box transcription factor Tbx20 regulates a genetic program for cranial motor neuron cell body migration. | Song, Mi-Ryoung; Shirasaki, Ryuichi; Cai, Chen-Leng; Ruiz, Esmeralda C; Evans, Sylvia M; Lee, Soo-Kyung; Pfaff, Samuel L | Development (Cambridge, England). | 17119020 | 2006 Dec; |
| Supramolecular allosteric cofacial porphyrin complexes. | Oliveri, Christopher G; Gianneschi, Nathan C; Nguyen, SonBinh T; Mirkin, Chad A; Stern, Charlotte L; Wawrzak, Zdzislaw; Pink, Maren | Journal of the American Chemical Society | 17165783 | 2006 Dec 20 |
| Maximizing DNA loading on a range of gold nanoparticle sizes. | Hurst, Sarah J; Lytton-Jean, Abigail K R; Mirkin, Chad A | Analytical chemistry | 17165821 | 2006 Dec 15 |
| Human CD4+ regulatory T cells express lower levels of the IL-7 receptor alpha chain (CD127), allowing consistent identification and sorting of live cells. | Hartigan-O'Connor, Dennis J; Poon, Chungkee; Sinclair, Elizabeth; McCune, Joseph M | Journal of immunological methods | 17173927 | 2007 Jan 30 |
| Local encoding of computationally designed enzyme activity. | Allert, Malin; Dwyer, Mary A; Hellinga, Homme W | Journal of molecular biology | 17196220 | 2007 Feb 23 |
| From the test tube to the cell: exploring the folding and aggregation of a beta-clam protein. | Ignatova, Zoya; Krishnan, Beena; Bombardier, Jeffrey P; Marcelino, Anna Marie C; Hong, Jiang; Gierasch, Lila M | Biopolymers | 17206628 | 2007 |
| Protein fabrication automation. | Cox, J Colin; Lape, Janel; Sayed, Mahmood A; Hellinga, Homme W | Protein science : a publication of the Protein Society | 17242375 | 2007 Mar |
| Pinch1 is required for normal development of cranial and cardiac neural crest-derived structures. | Liang, Xingqun; Sun, Yunfu; Schneider, Jurgen; Ding, Jian-Hua; Cheng, Hongqiang; Ye, Maoqing; Bhattacharya, Shoumo; Rearden, Ann; Evans, Sylvia; Chen, Ju | Circulation research. | 17272814 | 2007 Mar 02; |
| Measuring flux distributions for diffusion in the small-numbers limit. | Seitaridou, Effrosyni; Inamdar, Mandar M; Phillips, Rob; Ghosh, Kingshuk; Dill, Ken | The journal of physical chemistry. B | 17295536 | 2007 Mar 8 |
| Site-specific fluorescent labeling of poly-histidine sequences using a metal-chelating cysteine. | Krishnan, Beena; Szymanska, Aneta; Gierasch, Lila M | Chemical biology & drug design | 17313455 | 2007 Jan |
| Antiviral antibodies are necessary for control of simian immunodeficiency virus replication. | Miller, Christopher J; Genesca, Meritxell; Abel, Kristina; Montefiori, David; Forthal, Donald; Bost, Kristen; Li, Jun; Favre, David; McCune, Joseph M | Journal of virology | 17329327 | 2007 May |
| Vibrational response of Au-Ag nanoboxes and nanocages to ultrafast laser-induced heating. | Petrova, Hristina; Lin, Chien-Hua; Hu, Min; Chen, Jingyi; Siekkinen, Andrew R; Xia, Younan; Sader, John E; Hartland, Gregory V | Nano letters | 17358093 | 2007 Apr |
| Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly. | Wright, David A; Thibodeau-Beganny, Stacey; Sander, Jeffry D; Winfrey, Ronnie J; Hirsh, Andrew S; Eichtinger, Magdalena; Fu, Fengli; Porteus, Matthew H; Dobbs, Drena; Voytas, Daniel F; Joung, J Keith | Nature protocols | 17406455 | 2006 |
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| Fabrication of cubic nanocages and nanoframes by dealloying Au/Ag alloy nanoboxes with an aqueous etchant based on Fe(NO3)3 or NH4OH. | Lu, Xianmao; Au, Leslie; McLellan, Joseph; Li, Zhi-Yuan; Marquez, Manuel; Xia, Younan | Nano letters | 17489641 | 2007 Jun |
| A mouse model of tuberous sclerosis: neuronal loss of Tsc1 causes dysplastic and ectopic neurons, reduced myelination, seizure activity, and limited survival. | Meikle, Lynsey; Talos, Delia M; Onda, Hiroaki; Pollizzi, Kristen; Rotenberg, Alexander; Sahin, Mustafa; Jensen, Frances E; Kwiatkowski, David J | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 17522300 | 2007 May 23; |
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| Empty class II major histocompatibility complex created by peptide photolysis establishes the role of DM in peptide association. | Grotenbreg, Gijsbert M; Nicholson, Melissa J; Fowler, Kevin D; Wilbuer, Kathrin; Octavio, Leah; Yang, Maxine; Chakraborty, Arup K; Ploegh, Hidde L; Wucherpfennig, Kai W | The Journal of biological chemistry | 17525157 | 2007 Jul 20 |
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| Identification of a peptoid inhibitor of the proteasome 19S regulatory particle. | Lim, Hyun-Suk; Archer, Chase T; Kodadek, Thomas | Journal of the American Chemical Society | 17536803 | 2007 Jun 27 |
| Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method. | Meng, Xiangdong; Thibodeau-Beganny, Stacey; Jiang, Tao; Joung, J Keith; Wolfe, Scot A | Nucleic acids research | 17537811 | 2007 |
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| Development of the human infant intestinal microbiota. | Palmer, Chana; Bik, Elisabeth M; DiGiulio, Daniel B; Relman, David A; Brown, Patrick O | PLoS biology. | 17594176 | 2007 Jul; |
| Microarray detection of duplex and triplex DNA binders with DNA-modified gold nanoparticles. | Lytton-Jean, Abigail K R; Han, Min Su; Mirkin, Chad A | Analytical chemistry | 17614366 | 2007 Aug 1 |
| Human alpha B-crystallin mutation causes oxido-reductive stress and protein aggregation cardiomyopathy in mice. | Rajasekaran, Namakkal S; Connell, Patrice; Christians, Elisabeth S; Yan, Liang-Jun; Taylor, Ryan P; Orosz, Andras; Zhang, Xiu Q; Stevenson, Tamara J; Peshock, Ronald M; Leopold, Jane A; Barry, William H; Loscalzo, Joseph; Odelberg, Shannon J; Benjamin, Iv | Cell | 17693254 | 2007 Aug 10 |
| Loss of T cell responses following long-term cryopreservation. | Owen, Rachel E; Sinclair, Elizabeth; Emu, Brinda; Heitman, John W; Hirschkorn, Dale F; Epling, C Lorrie; Tan, Qi Xuan; Custer, Brian; Harris, Jeffery M; Jacobson, Mark A; McCune, Joseph M; Martin, Jeffery N; Hecht, Frederick M; Deeks, Steven G; Norris, Ph | Journal of immunological methods | 17707394 | 2007 Sep 30 |
| Structure-based design of robust glucose biosensors using a Thermotoga maritima periplasmic glucose-binding protein. | Tian, Yaji; Cuneo, Matthew J; Changela, Anita; Hocker, Birte; Beese, Lorena S; Hellinga, Homme W | Protein science : a publication of the Protein Society | 17766373 | 2007 Oct |
| Modulation of morphogenesis by noncanonical Wnt signaling requires ATF/CREB family-mediated transcriptional activation of TGFbeta2. | Zhou, Wenlai; Lin, Lizhu; Majumdar, Arindam; Li, Xue; Zhang, Xiaoxue; Liu, Wei; Etheridge, Leah; Shi, Yunqing; Martin, James; Van de Ven, Wim; Kaartinen, Vesa; Wynshaw-Boris, Anthony; McMahon, Andrew P; Rosenfeld, Michael G; Evans, Sylvia M | Nature genetics. | 17767158 | 2007 Oct; |
| Real-time observations of single bacteriophage lambda DNA ejections in vitro. | Grayson, Paul; Han, Lin; Winther, Tabita; Phillips, Rob | Proceedings of the National Academy of Sciences of the United States of America | 17804798 | 2007 Sep 11 |
| High resolution traction force microscopy based on experimental and computational advances. | Sabass, Benedikt; Gardel, Margaret L; Waterman, Clare M; Schwarz, Ulrich S | Biophysical journal | 17827246 | 2008 Jan 1 |
| Facile synthesis of Ag nanocubes and Au nanocages. | Skrabalak, Sara E; Au, Leslie; Li, Xingde; Xia, Younan | Nature protocols | 17853874 | 2007 |
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| Nonenzymatic detection of bacterial genomic DNA using the bio bar code assay. | Hill, Haley D; Vega, Rafael A; Mirkin, Chad A | Analytical chemistry | 17927207 | 2007 Dec 1 |
| Periodate-triggered cross-linking reveals Sug2/Rpt4 as the molecular target of a peptoid inhibitor of the 19S proteasome regulatory particle. | Lim, Hyun-Suk; Cai, Di; Archer, Chase T; Kodadek, Thomas | Journal of the American Chemical Society | 17929816 | 2007 Oct 31 |
| In-cell aggregation of a polyglutamine-containing chimera is a multistep process initiated by the flanking sequence. | Ignatova, Zoya; Thakur, Ashwani K; Wetzel, Ronald; Gierasch, Lila M | The Journal of biological chemistry | 17942400 | 2007 Dec 14 |
| Versatile, fully automated, microfluidic cell culture system. | Gomez-Sjoberg, Rafael; Leyrat, Anne A; Pirone, Dana M; Chen, Christopher S; Quake, Stephen R | Analytical chemistry | 17953452 | 2007 Nov 15 |
| Suppression of SIV-specific CD4+ T cells by infant but not adult macaque regulatory T cells: implications for SIV disease progression. | Hartigan-O'Connor, Dennis J; Abel, Kristina; McCune, Joseph M | The Journal of experimental medicine | 17954571 | 2007 Oct 29 |
| In vivo imaging of mucosal CD4+ T cells using single photon emission computed tomography in a murine model of colitis. | Kanwar, Bittoo; Gao, Dong Wei; Hwang, Andrew B; Grenert, James P; Williams, Simon P; Franc, Benjamin; McCune, Joseph M | Journal of immunological methods | 17964595 | 2008 Jan 1 |
| Gold nanocages for cancer detection and treatment. | Skrabalak, Sara E; Au, Leslie; Lu, Xianmao; Li, Xingde; Xia, Younan | Nanomedicine (London, England) | 17976028 | 2007 Oct |
| Neurotech for neuroscience: unifying concepts, organizing principles, and emerging tools. | Silver, Rae; Boahen, Kwabena; Grillner, Sten; Kopell, Nancy; Olsen, Kathie L | The Journal of neuroscience : the official journal of the Society for Neuroscience | 17978017 | 2007 Oct 31 |
| Oligonucleotide loading determines cellular uptake of DNA-modified gold nanoparticles. | Giljohann, David A; Seferos, Dwight S; Patel, Pinal C; Millstone, Jill E; Rosi, Nathaniel L; Mirkin, Chad A | Nano letters | 17997588 | 2007 Dec |
| Photoacoustic tomography of a rat cerebral cortex in vivo with au nanocages as an optical contrast agent. | Yang, Xinmai; Skrabalak, Sara E; Li, Zhi-Yuan; Xia, Younan; Wang, Lihong V | Nano letters | 18020475 | 2007 Dec |
| DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases. | Cornu, Tatjana I; Thibodeau-Beganny, Stacey; Guhl, Eva; Alwin, Stephen; Eichtinger, Magdalena; Joung, J Keith; Joung, J K; Cathomen, Toni | Molecular therapy : the journal of the American Society of Gene Therapy | 18026168 | 2008 Feb |
| Facile synthesis of tadpole-like nanostructures consisting of Au heads and Pd tails. | Camargo, Pedro H C; Xiong, Yujie; Ji, Li; Zuo, Jian M; Xia, Younan | Journal of the American Chemical Society | 18027954 | 2007 Dec 19 |
| Nano-flares: probes for transfection and mRNA detection in living cells. | Seferos, Dwight S; Giljohann, David A; Hill, Haley D; Prigodich, Andrew E; Mirkin, Chad A | Journal of the American Chemical Society | 18034495 | 2007 Dec 19 |
| Nanodisk codes. | Qin, Lidong; Banholzer, Matthew J; Millstone, Jill E; Mirkin, Chad A | Nano letters | 18041858 | 2007 Dec |
| Facile synthesis of gold nanoparticles with narrow size distribution by using AuCl or AuBr as the precursor. | Lu, Xianmao; Tuan, Hsing-Yu; Korgel, Brian A; Xia, Younan | Chemistry (Weinheim an der Bergstrasse, Germany) | 18058964 | 2008 |
| Relationship between T cell activation and CD4+ T cell count in HIV-seropositive individuals with undetectable plasma HIV RNA levels in the absence of therapy. | Hunt, Peter W; Brenchley, Jason; Sinclair, Elizabeth; McCune, Joseph M; Roland, Michelle; Page-Shafer, Kimberly; Hsue, Priscilla; Emu, Brinda; Krone, Melissa; Lampiris, Harry; Douek, Daniel; Martin, Jeffrey N; Deeks, Steven G | The Journal of infectious diseases | 18171295 | 2008 Jan 1 |
| The contribution of Islet1-expressing splanchnic mesoderm cells to distinct branchiomeric muscles reveals significant heterogeneity in head muscle development. | Nathan, Elisha; Monovich, Amir; Tirosh-Finkel, Libbat; Harrelson, Zachary; Rousso, Tal; Rinon, Ariel; Harel, Itamar; Evans, Sylvia M; Tzahor, Eldad | Development (Cambridge, England). | 18184728 | 2008 Feb; |
| Bacillus anthracis-derived nitric oxide is essential for pathogen virulence and survival in macrophages. | Shatalin, Konstantin; Gusarov, Ivan; Avetissova, Ekaterina; Shatalina, Yelena; McQuade, Lindsey E; Lippard, Stephen J; Nudler, Evgeny | Proceedings of the National Academy of Sciences of the United States of America | 18215992 | 2008 Jan 22 |
| Analysis of between-trial and within-trial neural spiking dynamics. | Czanner, Gabriela; Eden, Uri T; Wirth, Sylvia; Yanike, Marianna; Suzuki, Wendy A; Brown, Emery N | Journal of neurophysiology | 18216233 | 2008 May |
| Enhanced plating efficiency of trypsin-adapted human embryonic stem cells is reversible and independent of trisomy 12/17. | Chan, Elayne M; Yates, Frank; Boyer, Leah F; Schlaeger, Thorsten M; Daley, George Q | Cloning and stem cells | 18241122 | 2008 Mar |
| Phylogenetic fate mapping: theoretical and experimental studies applied to the development of mouse fibroblasts. | Salipante, Stephen J; Thompson, James M; Horwitz, Marshall S | Genetics | 18245843 | 2008 Feb |
| Roles of beta-turns in protein folding: from peptide models to protein engineering. | Marcelino, Anna Marie C; Gierasch, Lila M | Biopolymers | 18275088 | 2008 May |
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| Rett syndrome-causing mutations in human MeCP2 result in diverse structural changes that impact folding and DNA interactions. | Ghosh, Rajarshi P; Horowitz-Scherer, Rachel A; Nikitina, Tatiana; Gierasch, Lila M; Woodcock, Christopher L | The Journal of biological chemistry | 18499664 | 2008 Jul 18 |
| A peptoid antagonist of VEGF receptor 2 recognizes a 'hotspot' in the extracellular domain distinct from the hormone-binding site. | Udugamasooriya, D Gomika; Ritchie, Caroline; Brekken, Rolf A; Kodadek, Thomas | Bioorganic & medicinal chemistry | 18501615 | 2008 Jun 15 |
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| On-wire lithography-generated molecule-based transport junctions: a new testbed for molecular electronics. | Chen, Xiaodong; Jeon, You-Moon; Jang, Jae-Won; Qin, Lidong; Huo, Fengwei; Wei, Wei; Mirkin, Chad A | Journal of the American Chemical Society | 18528994 | 2008 Jul 02 |
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| Tailoring the Optical and Catalytic Properties of Gold-Silver Nanoboxes and Nanocages by Introducing Palladium. | Cobley, Claire M; Campbell, Dean J; Xia, Younan | Advanced materials (Deerfield Beach, Fla.) | 18568091 | 2008 Feb |
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| A new approach to amplified telomerase detection with polyvalent oligonucleotide nanoparticle conjugates. | Zheng, Gengfeng; Daniel, Weston L; Mirkin, Chad A | Journal of the American Chemical Society | 18597453 | 2008 Jul 30 |
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| Iodide ions control seed-mediated growth of anisotropic gold nanoparticles. | Millstone, Jill E; Wei, Wei; Jones, Matthew R; Yoo, Hyojong; Mirkin, Chad A | Nano letters | 18642955 | 2008 Aug |
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| Detecting bacteria and determining their susceptibility to antibiotics by stochastic confinement in nanoliter droplets using plug-based microfluidics. | Boedicker, James Q; Li, Liang; Kline, Timothy R; Ismagilov, Rustem F | Lab on a chip | 18651067 | 2008 Aug |
| The pharmacophore of a peptoid VEGF receptor 2 antagonist includes both side chain and main chain residues. | Udugamasooriya, D Gomika; Dunham, Geoff; Ritchie, Caroline; Brekken, Rolf A; Kodadek, Thomas | Bioorganic & medicinal chemistry letters | 18653335 | 2008 Nov 15 |
| A self-correcting inking strategy for cantilever arrays addressed by an inkjet printer and used for dip-pen nanolithography. | Wang, Yuhuang; Giam, Louise R; Park, Matt; Lenhert, Steven; Fuchs, Harald; Mirkin, Chad A | Small (Weinheim an der Bergstrasse, Germany) | 18654990 | 2008 Oct |
| Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification. | Maeder, Morgan L; Thibodeau-Beganny, Stacey; Osiak, Anna; Wright, David A; Anthony, Reshma M; Eichtinger, Magdalena; Jiang, Tao; Foley, Jonathan E; Winfrey, Ronnie J; Townsend, Jeffrey A; Unger-Wallace, Erica; Sander, Jeffry D; Muller-Lerch, Felix; Fu, Fe | Molecular cell | 18657511 | 2008 Jul 25 |
| Motion processing streams in Drosophila are behaviorally specialized. | Katsov, Alexander Y; Clandinin, Thomas R | Neuron | 18667159 | 2008 Jul 31 |
| PCR-like cascade reactions in the context of an allosteric enzyme mimic. | Yoon, Hyo Jae; Mirkin, Chad A | Journal of the American Chemical Society | 18681433 | 2008 Sep 03 |
| Early alterations of AMPA receptors mediate synaptic potentiation induced by neonatal seizures. | Rakhade, Sanjay N; Zhou, Chengwen; Aujla, Paven K; Fishman, Rachel; Sucher, Nikolaus J; Jensen, Frances E | The Journal of neuroscience : the official journal of the Society for Neuroscience | 18685023 | 2008 Aug 6 |
| Disease-specific induced pluripotent stem cells. | Park, In-Hyun; Arora, Natasha; Huo, Hongguang; Maherali, Nimet; Ahfeldt, Tim; Shimamura, Akiko; Lensch, M William; Cowan, Chad; Hochedlinger, Konrad; Daley, George Q | Cell | 18691744 | 2008 Sep 5 |
| Polymer pen lithography. | Huo, Fengwei; Zheng, Zijian; Zheng, Gengfeng; Giam, Louise R; Zhang, Hua; Mirkin, Chad A | Science (New York, N.Y.) | 18703709 | 2008 Sep 19 |
| Three-dimensional hybridization with polyvalent DNA-gold nanoparticle conjugates. | Hurst, Sarah J; Hill, Haley D; Mirkin, Chad A | Journal of the American Chemical Society | 18710229 | 2008 Sep 10 |
| Structural analysis of a periplasmic binding protein in the tripartite ATP-independent transporter family reveals a tetrameric assembly that may have a role in ligand transport. | Cuneo, Matthew J; Changela, Anita; Miklos, Aleksandr E; Beese, Lorena S; Krueger, Joanna K; Hellinga, Homme W | The Journal of biological chemistry | 18723845 | 2008 Nov 21 |
| A Comparative Study of Galvanic Replacement Reactions Involving Ag Nanocubes and AuCl(2) or AuCl(4). | Au, Leslie; Lu, Xianmao; Xia, Younan | Advanced materials (Deerfield Beach, Fla.) | 18725963 | 2008 |
| Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation. | DiGiulio, Daniel B; Romero, Roberto; Amogan, Harold P; Kusanovic, Juan Pedro; Bik, Elisabeth M; Gotsch, Francesca; Kim, Chong Jai; Erez, Offer; Edwin, Sam; Relman, David A | PloS one | 18725970 | 2008 |
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| Discovery of a hepatitis C target and its pharmacological inhibitors by microfluidic affinity analysis. | Einav, Shirit; Gerber, Doron; Bryson, Paul D; Sklan, Ella H; Elazar, Menashe; Maerkl, Sebastian J; Glenn, Jeffrey S; Quake, Stephen R | Nature biotechnology | 18758449 | 2008 Sep |
| Surface plasmon-mediated energy transfer in heterogap Au-Ag nanowires. | Wei, Wei; Li, Shuzhou; Qin, Lidong; Xue, Can; Millstone, Jill E; Xu, Xiaoyang; Schatz, George C; Mirkin, Chad A | Nano letters | 18767888 | 2008 Oct |
| Morphological Evolution of Single-Crystal Ag Nanospheres during the Galvanic Replacement Reaction with HAuCl(4). | Kim, Mun Ho; Lu, Xianmao; Wiley, Benjamin; Lee, Eric P; Xia, Younan | The journal of physical chemistry. C, Nanomaterials and interfaces | 18787649 | 2008 |
| Activation of tyrosine kinases by mutation of the gatekeeper threonine. | Azam, Mohammad; Seeliger, Markus A; Gray, Nathanael S; Kuriyan, John; Daley, George Q | Nature structural & molecular biology | 18794843 | 2008 Oct |
| Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays. | Fu, Fengli; Sander, Jeffry D; Maeder, Morgan; Thibodeau-Beganny, Stacey; Joung, J Keith; Dobbs, Drena; Miller, Leslie; Voytas, Daniel F | Nucleic acids research | 18812396 | 2009 Jan |
| Dark-field microscopy studies of single metal nanoparticles: understanding the factors that influence the linewidth of the localized surface plasmon resonance. | Hu, Min; Novo, Carolina; Funston, Alison; Wang, Haining; Staleva, Hristina; Zou, Shengli; Mulvaney, Paul; Xia, Younan; Hartland, Gregory V | Journal of materials chemistry | 18846243 | 2008 |
| A stochastic single-molecule event triggers phenotype switching of a bacterial cell. | Choi, Paul J; Cai, Long; Frieda, Kirsten; Xie, X Sunney | Science (New York, N.Y.) | 18927393 | 2008 Oct 17 |
| The differentiation of embryonic stem cells seeded on electrospun nanofibers into neural lineages. | Xie, Jingwei; Willerth, Stephanie M; Li, Xiaoran; Macewan, Matthew R; Rader, Allison; Sakiyama-Elbert, Shelly E; Xia, Younan | Biomaterials | 18930315 | 2009 Jan |
| Cross-strand split tetra-Cys motifs as structure sensors in a beta-sheet protein. | Krishnan, Beena; Gierasch, Lila M | Chemistry & biology | 18940670 | 2008 Oct 20 |
| Evidence for persistent low-level viremia in individuals who control human immunodeficiency virus in the absence of antiretroviral therapy. | Hatano, Hiroyu; Delwart, Eric L; Norris, Philip J; Lee, Tzong-Hae; Dunn-Williams, Joan; Hunt, Peter W; Hoh, Rebecca; Stramer, Susan L; Linnen, Jeffrey M; McCune, Joseph M; Martin, Jeffrey N; Busch, Michael P; Deeks, Steven G | Journal of virology | 18945778 | 2009 Jan |
| Constructing emotion: the experience of fear as a conceptual act. | Lindquist, Kristen A; Barrett, Lisa Feldman | Psychological science | 18947355 | 2008 Sep |
| Homozygous missense N629D hERG (KCNH2) potassium channel mutation causes developmental defects in the right ventricle and its outflow tract and embryonic lethality. | Teng, Guo Qi; Zhao, Xian; Lees-Miller, James P; Quinn, F Russell; Li, Pin; Rancourt, Derrick E; London, Barry; Cross, James C; Duff, Henry J | Circulation research | 18948620 | 2008 Dec 5 |
| The chemistrode: a droplet-based microfluidic device for stimulation and recording with high temporal, spatial, and chemical resolution. | Chen, Delai; Du, Wenbin; Liu, Ying; Liu, Weishan; Kuznetsov, Andrey; Mendez, Felipe E; Philipson, Louis H; Ismagilov, Rustem F | Proceedings of the National Academy of Sciences of the United States of America | 18974218 | 2008 Nov 4 |
| Pre-miRNA loop nucleotides control the distinct activities of mir-181a-1 and mir-181c in early T cell development. | Liu, Gwen; Min, Hyeyoung; Yue, Sibiao; Chen, Chang-Zheng | PloS one | 18974849 | 2008 |
| Facile synthesis of branched au nanostructures by templating against a self-destructive lattice of magnetic fe nanoparticles. | Li, Zhengquan; Li, Weiyang; Camargo, Pedro H C; Xia, Younan | Angewandte Chemie (International ed. in English) | 18988222 | 2008 |
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| Tim-3 expression defines a novel population of dysfunctional T cells with highly elevated frequencies in progressive HIV-1 infection. | Jones, R Brad; Ndhlovu, Lishomwa C; Barbour, Jason D; Sheth, Prameet M; Jha, Aashish R; Long, Brian R; Wong, Jessica C; Satkunarajah, Malathy; Schweneker, Marc; Chapman, Joan M; Gyenes, Gabor; Vali, Bahareh; Hyrcza, Martin D; Yue, Feng Yun; Kovacs, Colin; | The Journal of experimental medicine | 19001139 | 2008 Nov 24 |
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| Topographically flat, chemically patterned PDMS stamps made by dip-pen nanolithography. | Zheng, Zijian; Jang, Jae-Won; Zheng, Gengfeng; Mirkin, Chad A | Angewandte Chemie (International ed. in English) | 19012308 | 2008 |
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| DNA-gold triangular nanoprism conjugates. | Millstone, Jill E; Georganopoulou, Dimitra G; Xu, Xiaoyang; Wei, Wei; Li, Shuyou; Mirkin, Chad A | Small (Weinheim an der Bergstrasse, Germany) | 19016498 | 2008 Dec |
| The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. | Dethlefsen, Les; Huse, Sue; Sogin, Mitchell L; Relman, David A | PLoS biology | 19018661 | 2008 Nov 18 |
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| Spatial localization of bacteria controls coagulation of human blood by 'quorum acting'. | Kastrup, Christian J; Boedicker, James Q; Pomerantsev, Andrei P; Moayeri, Mahtab; Bian, Yao; Pompano, Rebecca R; Kline, Timothy R; Sylvestre, Patricia; Shen, Feng; Leppla, Stephen H; Tang, Wei-Jen; Ismagilov, Rustem F | Nature chemical biology | 19031531 | 2008 Dec |
| Alpha-Synuclein conformation affects its tyrosine-dependent oxidative aggregation. | Ruf, Rebecca A S; Lutz, Evan A; Zigoneanu, Imola G; Pielak, Gary J | Biochemistry | 19049426 | 2008 Dec 23 |
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| Maternal alloantigens promote the development of tolerogenic fetal regulatory T cells in utero. | Mold, Jeff E; Michaelsson, Jakob; Burt, Trevor D; Muench, Marcus O; Beckerman, Karen P; Busch, Michael P; Lee, Tzong-Hae; Nixon, Douglas F; McCune, Joseph M | Science (New York, N.Y.) | 19056990 | 2008 Dec 5 |
| Troger's-base-derived infinite co-ordination polymer microparticles. | Jeon, You-Moon; Armatas, Gerasimos S; Kim, Dongwoo; Kanatzidis, Mercouri G; Mirkin, Chad A | Small (Weinheim an der Bergstrasse, Germany) | 19058289 | 2009 Jan |
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| Near-infrared gold nanocages as a new class of tracers for photoacoustic sentinel lymph node mapping on a rat model. | Song, Kwang Hyun; Kim, Chulhong; Cobley, Claire M; Xia, Younan; Wang, Lihong V | Nano letters. | 19072058 | 2009 Jan; |
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| Potential network mechanisms mediating electroencephalographic beta rhythm changes during propofol-induced paradoxical excitation. | McCarthy, Michelle M; Brown, Emery N; Kopell, Nancy | The Journal of neuroscience : the official journal of the Society for Neuroscience | 19074022 | 2008 Dec 10 |
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| Traction stress in focal adhesions correlates biphasically with actin retrograde flow speed. | Gardel, Margaret L; Sabass, Benedikt; Ji, Lin; Danuser, Gaudenz; Schwarz, Ulrich S; Waterman, Clare M | The Journal of cell biology | 19075110 | 2008 Dec 15 |
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| 'Til death do us part': coming to terms with symbiotic relationships. Forward. | Relman, David A | Nature reviews. Microbiology | 19086265 | 2008 Oct |
| Label-free biomedical imaging with high sensitivity by stimulated Raman scattering microscopy. | Freudiger, Christian W; Min, Wei; Saar, Brian G; Lu, Sijia; Holtom, Gary R; He, Chengwei; Tsai, Jason C; Kang, Jing X; Xie, X Sunney | Science (New York, N.Y.) | 19095943 | 2008 Dec 19 |
| An in vitro microfluidic approach to generating protein-interaction networks. | Gerber, Doron; Maerkl, Sebastian J; Quake, Stephen R | Nature methods | 19098921 | 2009 Jan |
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| Gag p27-specific B- and T-cell responses in Simian immunodeficiency virus SIVagm-infected African green monkeys. | Lozano Reina, Jose-Manuel; Favre, David; Kasakow, Zeljka; Mayau, Veronique; Nugeyre, Marie-Therese; Ka, Thierno; Faye, Abdourahmane; Miller, Christopher J; Scott-Algara, Daniel; McCune, Joseph M; Barre-Sinoussi, Francoise; Diop, Ousmane M; Muller-Trutwin, | Journal of virology | 19109377 | 2009 Mar |
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| Chapter 3: A fluorescent window into protein folding and aggregation in cells. | Ignatova, Zoya; Gierasch, Lila M | Methods in cell biology | 19118672 | 2008 |
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| Suberoylanilide hydroxamic acid reactivates HIV from latently infected cells. | Contreras, Xavier; Schweneker, Marc; Chen, Ching-Shih; McCune, Joseph M; Deeks, Steven G; Martin, Jeffrey; Peterlin, B Matija | The Journal of biological chemistry | 19136668 | 2009 Mar 13 |
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| A facile synthesis of asymmetric hybrid colloidal particles. | Ohnuma, Akira; Cho, Eun Chul; Camargo, Pedro H C; Au, Leslie; Ohtani, Bunsho; Xia, Younan | Journal of the American Chemical Society | 19140763 | 2009 Feb 4 |
| Dimers of silver nanospheres: facile synthesis and their use as hot spots for surface-enhanced Raman scattering. | Li, Weiyang; Camargo, Pedro H C; Lu, Xianmao; Xia, Younan | Nano letters | 19143509 | 2009 Jan |
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| Choroid-plexus-derived Otx2 homeoprotein constrains adult cortical plasticity. | Spatazza, Julien; Lee, Henry H C; Di Nardo, Ariel A; Tibaldi, Lorenzo; Joliot, Alain; Hensch, Takao K; Prochiantz, Alain | Cell reports | 23770240 | 2013 Jun 27 |
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| Thalamocortical mechanisms for the anteriorization of alpha rhythms during propofol-induced unconsciousness. | Vijayan, Sujith; Ching, Shinung; Purdon, Patrick L; Brown, Emery N; Kopell, Nancy J | The Journal of neuroscience : the official journal of the Society for Neuroscience | 23825412 | 2013 Jul 3 |
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| R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli. | Wimberly, Hallie; Shee, Chandan; Thornton, P C; Sivaramakrishnan, Priya; Rosenberg, Susan M; Hastings, P J | Nature communications | 23828459 | 2013 Jul 5 |
| The developmental transcriptome of the mosquito Aedes aegypti, an invasive species and major arbovirus vector. | Akbari, Omar S; Antoshechkin, Igor; Amrhein, Henry; Williams, Brian; Diloreto, Race; Sandler, Jeremy; Hay, Bruce A | G3 (Bethesda, Md.) | 23833213 | 2013 Sep |
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| Complexity generation in fungal polyketide biosynthesis: a spirocycle-forming P450 in the concise pathway to the antifungal drug griseofulvin. | Cacho, Ralph A; Chooi, Yit-Heng; Zhou, Hui; Tang, Yi | ACS chemical biology | 23978092 | 2013 Oct 18 |
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| Rate-dependent force, intracellular calcium, and action potential voltage alternans are modulated by sarcomere length and heart failure induced-remodeling of thin filament regulation in human heart failure: A myocyte modeling study. | Zile, Melanie A; Trayanova, Natalia A | Progress in biophysics and molecular biology. | 26724571 | 2015 Dec 25; |
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| Production of New Cladosporin Analogues by Reconstitution of the Polyketide Synthases Responsible for the Biosynthesis of this Antimalarial Agent. | Cochrane, Rachel V K; Sanichar, Randy; Lambkin, Gareth R; Reiz, Béla; Xu, Wei; Tang, Yi; Vederas, John C | Angewandte Chemie (International ed. in English). | 26783060 | 2016 Jan 11; |
| Mode of action and resistance studies unveil new roles for tropodithietic acid as an anticancer agent and the ?-glutamyl cycle as a proton sink. | Wilson, Maxwell Z; Wang, Rurun; Gitai, Zemer; Seyedsayamdost, Mohammad R | Proceedings of the National Academy of Sciences of the United States of America. | 26802120 | 2016 Feb 9; |
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| Intermittent drivers anchoring to structural heterogeneities as a major pathophysiological mechanism of human persistent atrial fibrillation. | Haissaguerre, Michel; Shah, Ashok J; Cochet, Hubert; Hocini, Meleze; Dubois, Remi; Efimov, Igor; Vigmond, Edward; Bernus, Olivier; Trayanova, Natalia | The Journal of physiology. | 26890861 | 2016 May 1; |
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| Association of Left Atrial Local Conduction Velocity With Late Gadolinium Enhancement on Cardiac Magnetic Resonance in Patients With Atrial Fibrillation. | Fukumoto, Kotaro; Habibi, Mohammadali; Ipek, Esra Gucuk; Zahid, Sohail; Khurram, Irfan M; Zimmerman, Stefan L; Zipunnikov, Vadim; Spragg, David; Ashikaga, Hiroshi; Trayanova, Natalia; Tomaselli, Gordon F; Rickard, John; Marine, Joseph E; Berger, Ronald D; | Circulation. Arrhythmia and electrophysiology. | 26917814 | 2016 Mar; |
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| Reactivation of Latent HIV-1 Expression by Engineered TALE Transcription Factors. | Perdigão, Pedro; Gaj, Thomas; Santa-Marta, Mariana; Barbas 3rd, Carlos F; Goncalves, Joao | PloS one. | 26933881 | 2016; |
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| UVnovo: A de Novo Sequencing Algorithm Using Single Series of Fragment Ions via Chromophore Tagging and 351 nm Ultraviolet Photodissociation Mass Spectrometry. | Robotham, Scott A; Horton, Andrew P; Cannon, Joe R; Cotham, Victoria C; Marcotte, Edward M; Brodbelt, Jennifer S | Analytical chemistry. | 26938041 | 2016 Apr 5; |
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| Interaction Between HCN and Slack Channels Regulates mPFC Pyramidal Cell Excitability and Working Memory. | Wu, Jing; El-Hassar, Lynda; Datta, Dibyadeep; Thomas, Merrilee; Zhang, Yalan; Jenkins, David P; DeLuca, Nicholas J; Chatterjee, Manavi; Gribkoff, Valentin K; Arnsten, Amy F T; Kaczmarek, Leonard K | Research square | 37205397 | 2023 May 04 |
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| Interrogating the Etiology of Sporadic Alzheimer's Disease Using Aging Rhesus Macaques: Cellular, Molecular, and Cortical Circuitry Perspectives. | Datta, Dibyadeep | The journals of gerontology. Series A, Biological sciences and medical sciences | 37279946 | 2023 Aug 27 |
| Functional gene delivery to and across brain vasculature of systemic AAVs with endothelial-specific tropism in rodents and broad tropism in primates. | Chen, Xinhong; Wolfe, Damien A; Bindu, Dhanesh Sivadasan; Zhang, Mengying; Taskin, Naz; Goertsen, David; Shay, Timothy F; Sullivan, Erin E; Huang, Sheng-Fu; Ravindra Kumar, Sripriya; Arokiaraj, Cynthia M; Plattner, Viktor M; Campos, Lillian J; Mich, John K; Monet, Deja; Ngo, Victoria; Ding, Xiaozhe; Omstead, Victoria; Weed, Natalie; Bishaw, Yeme; Gore, Bryan B; Lein, Ed S; Akrami, Athena; Miller, Cory; Levi, Boaz P; Keller, Annika; Ting, Jonathan T; Fox, Andrew S; Eroglu, Cagla; Gradinaru, Viviana | Nature communications | 37291094 | 2023 Jun 08 |
| Single-cell transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states associated with senescence. | Walter, Lauren D; Orton, Jessica L; Fong, Ern Hwei Hannah; Maymi, Viviana I; Rudd, Brian D; Elisseeff, Jennifer H; Cosgrove, Benjamin D | bioRxiv : the preprint server for biology | 37292698 | 2023 May 26 |
| Individual Deviations from Normative Electroencephalographic Connectivity Predict Antidepressant Response. | Tong, Xiaoyu; Xie, Hua; Wu, Wei; Keller, Corey; Fonzo, Gregory; Chidharom, Matthieu; Carlisle, Nancy; Etkin, Amit; Zhang, Yu | medRxiv : the preprint server for health sciences | 37292874 | 2023 May 28 |
| Rarely acquired type II-A CRISPR-Cas spacers mediate anti-viral immunity through the targeting of a non-canonical PAM sequence. | Kenney, Claire T; Marraffini, Luciano A | Nucleic acids research | 37293964 | 2023 Aug 11 |
| Structural changes in the SARS-CoV-2 spike E406W mutant escaping a clinical monoclonal antibody cocktail. | Addetia, Amin; Park, Young-Jun; Starr, Tyler; Greaney, Allison J; Sprouse, Kaitlin R; Bowen, John E; Tiles, Sasha W; Van Voorhis, Wesley C; Bloom, Jesse D; Corti, Davide; Walls, Alexandra C; Veesler, David | Cell reports | 37300832 | 2023 May 26 |
| Human cells experience a Zn2+ pulse in early G1. | Rakshit, Ananya; Holtzen, Samuel E; Lo, Maria N; Conway, Kylie A; Palmer, Amy E | Cell reports | 37330912 | 2023 Jun 27 |
| A Spatiotemporal Compartmentalization of Glucose Metabolism Guides Mammalian Gastrulation Progression. | Cao, Dominica; Zhong, Liangwen; Hemalatha, Anupama; Bergmann, Jenna; Cox, Andy L; Greco, Valentina; Sozen, Berna | bioRxiv : the preprint server for biology | 37333168 | 2023 Jun 08 |
| Viral evasion of the interferon response at a glance. | Zhu, Junji; Chiang, Cindy; Gack, Michaela U | Journal of cell science | 37341132 | 2023 Jun 15 |
| Real-Time Monitoring of Multitarget Antimicrobial Mechanisms of Peptoids Using Label-Free Imaging with Optical Diffraction Tomography. | Kim, Minsang; Cheon, Yeongmi; Shin, Dongmin; Choi, Jieun; Nielsen, Josefine Eilsø; Jeong, Myeong Seon; Nam, Ho Yeon; Kim, Sung-Hak; Lund, Reidar; Jenssen, Håvard; Barron, Annelise E; Lee, Seongsoo; Seo, Jiwon | Advanced science (Weinheim, Baden-Wurttemberg, Germany) | 37341246 | 2023 Jun 21 |
| Injury prevents Ras mutant cell expansion in mosaic skin. | Gallini, Sara; Annusver, Karl; Rahman, Nur-Taz; Gonzalez, David G; Yun, Sangwon; Matte-Martone, Catherine; Xin, Tianchi; Lathrop, Elizabeth; Suozzi, Kathleen C; Kasper, Maria; Greco, Valentina | Nature | 37344586 | 2023 Jul |
| Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes. | Carter, Matthew M; Olm, Matthew R; Merrill, Bryan D; Dahan, Dylan; Tripathi, Surya; Spencer, Sean P; Yu, Feiqiao B; Jain, Sunit; Neff, Norma; Jha, Aashish R; Sonnenburg, Erica D; Sonnenburg, Justin L | Cell | 37348505 | 2023 Jul 06 |
| Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex. | Huilgol, Dhananjay; Levine, Jesse M; Galbavy, William; Wang, Bor-Shuen; He, Miao; Suryanarayana, Shreyas M; Huang, Z Josh | Neuron | 37348506 | 2023 Aug 16 |
| Paenibacillus spp infection among infants with postinfectious hydrocephalus in Uganda: an observational case-control study. | Morton, Sarah U; Hehnly, Christine; Burgoine, Kathy; Ssentongo, Paddy; Ericson, Jessica E; Kumar, M Senthil; Hagmann, Cornelia; Fronterre, Claudio; Smith, Jasmine; Movassagh, Mercedeh; Streck, Nicholas; Bebell, Lisa M; Bazira, Joel; Kumbakumba, Elias; Bajunirwe, Francis; Mulondo, Ronald; Mbabazi-Kabachelor, Edith; Nsubuga, Brian K; Natukwatsa, Davis; Nalule, Esther; Magombe, Joshua; Erickson, Tim; Ngonzi, Joseph; Ochora, Moses; Olupot-Olupot, Peter; Onen, Justin; Ssenyonga, Peter; Mugamba, John; Warf, Benjamin C; Kulkarni, Abhaya V; Lane, Jessica; Whalen, Andrew J; Zhang, Lijun; Sheldon, Kathryn; Meier, Frederick A; Kiwanuka, Julius; Broach, James R; Paulson, Joseph N; Schiff, Steven J | The Lancet. Microbe | 37348522 | 2023 Aug |
| Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution. | Brennan, Caitriona; Salido, Rodolfo A; Belda-Ferre, Pedro; Bryant, MacKenzie; Cowart, Charles; Tiu, Maria D; González, Antonio; McDonald, Daniel; Tribelhorn, Caitlin; Zarrinpar, Amir; Knight, Rob | mSystems | 37350611 | 2023 Aug 31 |
| Drugging evolution of antibiotic resistance at a regulatory network hub. | Zhai, Yin; Pribis, John P; Dooling, Sean W; Garcia-Villada, Libertad; Minnick, P J; Xia, Jun; Liu, Jingjing; Mei, Qian; Fitzgerald, Devon M; Herman, Christophe; Hastings, P J; Costa-Mattioli, Mauro; Rosenberg, Susan M | Science advances | 37352342 | 2023 Jun 23 |
| An armed anti-immunoglobulin light chain nanobody protects mice against influenza A and B infections. | Liu, Xin; Balligand, Thomas; Carpenet, Claire; Ploegh, Hidde L | Science immunology | 37352373 | 2023 Jun 23 |
| Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome. | Wang, Min; Osborn, Lucas J; Jain, Sunit; Meng, Xiandong; Weakley, Allison; Yan, Jia; Massey, William J; Varadharajan, Venkateshwari; Horak, Anthony; Banerjee, Rakhee; Allende, Daniela S; Chan, E Ricky; Hajjar, Adeline M; Wang, Zeneng; Dimas, Alejandra; Zhao, Aishan; Nagashima, Kazuki; Cheng, Alice G; Higginbottom, Steven; Hazen, Stanley L; Brown, J Mark; Fischbach, Michael A | Cell | 37352836 | 2023 Jun 22 |
| Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases. | Rahman, Gibraan; McDonald, Daniel; Gonzalez, Antonio; Vázquez-Baeza, Yoshiki; Jiang, Lingjing; Casals-Pascual, Climent; Hakim, Daniel; Dilmore, Amanda Hazel; Nowinski, Brent; Peddada, Shyamal; Knight, Rob | Genes | 37372419 | 2023 Jun 09 |
| Remote neuronal activity drives glioma progression through SEMA4F. | Huang-Hobbs, Emmet; Cheng, Yi-Ting; Ko, Yeunjung; Luna-Figueroa, Estefania; Lozzi, Brittney; Taylor, Kathryn R; McDonald, Malcolm; He, Peihao; Chen, Hsiao-Chi; Yang, Yuhui; Maleki, Ehson; Lee, Zhung-Fu; Murali, Sanjana; Williamson, Michael R; Choi, Dongjo | Nature | 37380778 | 2023 Jul |
| The active zone protein CLA-1 (Clarinet) bridges two subsynaptic domains to regulate presynaptic sorting of ATG-9. | Xuan, Zhao; Colón-Ramos, Daniel A | Autophagy | 37389488 | 2023 Oct |
| Bacterial DNA on the skin surface overrepresents the viable skin microbiome. | Acosta, Ellen M; Little, Katherine A; Bratton, Benjamin P; Lopez, Jaime G; Mao, Xuming; Payne, Aimee S; Donia, Mohamed; Devenport, Danelle; Gitai, Zemer | eLife | 37389570 | 2023 Jun 30 |
| Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy. | McFaline-Figueroa, José L; Srivatsan, Sanjay; Hill, Andrew J; Gasperini, Molly; Jackson, Dana L; Saunders, Lauren; Domcke, Silvia; Regalado, Samuel G; Lazarchuck, Paul; Alvarez, Sarai; Monnat Jr, Raymond J; Shendure, Jay; Trapnell, Cole | bioRxiv : the preprint server for biology | 37398090 | 2023 Jun 14 |
| iEEG-recon: A Fast and Scalable Pipeline for Accurate Reconstruction of Intracranial Electrodes and Implantable Devices. | Lucas, Alfredo; Scheid, Brittany H; Pattnaik, Akash R; Gallagher, Ryan; Mojena, Marissa; Tranquille, Ashley; Prager, Brian; Gleichgerrcht, Ezequiel; Gong, Ruxue; Litt, Brian; Davis, Kathryn A; Das, Sandhitsu; Stein, Joel M; Sinha, Nishant | medRxiv : the preprint server for health sciences | 37398160 | 2023 Jun 13 |
| Hierarchical design of pseudosymmetric protein nanoparticles. | Dowling, Quinton M; Park, Young-Jun; Gerstenmaier, Neil; Yang, Erin C; Wargacki, Adam; Hsia, Yang; Fries, Chelsea N; Ravichandran, Rashmi; Walkey, Carl; Burrell, Anika; Veesler, David; Baker, David; King, Neil P | bioRxiv : the preprint server for biology | 37398374 | 2023 Jun 17 |
| Forces and energetics of the canonical tetrameric cation channel gating. | Scheuring, Simon | Proceedings of the National Academy of Sciences of the United States of America | 37399394 | 2023 Jul 11 |
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| Chopped! Newfound GSDMD cleavage facilitates tolerance to food allergens. | Healy, Liam B; Du, Gang; Wu, Hao | Trends in immunology | 37414717 | 2023 Aug |
| Organ function is preserved despite reorganization of niche architecture in the hair follicle. | Wei, Haoyang; Du, Shuangshuang; Parksong, Jeeun; Pasolli, H Amalia; Matte-Martone, Catherine; Regot, Sergi; Gonzalez, Lauren E; Xin, Tianchi; Greco, Valentina | Cell stem cell | 37419106 | 2023 Jul 06 |
| A shared linguistic space for transmitting our thoughts from brain to brain in natural conversations. | Zada, Zaid; Goldstein, Ariel; Michelmann, Sebastian; Simony, Erez; Price, Amy; Hasenfratz, Liat; Barham, Emily; Zadbood, Asieh; Doyle, Werner; Friedman, Daniel; Dugan, Patricia; Melloni, Lucia; Devore, Sasha; Flinker, Adeen; Devinsky, Orrin; Nastase, Samuel A; Hasson, Uri | bioRxiv : the preprint server for biology | 37425747 | 2023 Jun 29 |
| Decreased efficacy of a COVID-19 vaccine due to mutations present in early SARS-CoV-2 variants of concern. | Weidenbacher, Payton A-B; Friedland, Natalia; Sanyal, Mrinmoy; Morris, Mary Kate; Do, Jonathan; Hanson, Carl; Kim, Peter S | bioRxiv : the preprint server for biology | 37425802 | 2023 Jun 29 |
| A call for better validation of opioid overdose risk algorithms. | McElfresh, Duncan C; Chen, Lucia; Oliva, Elizabeth; Joyce, Vilija; Rose, Sherri; Tamang, Suzanne | Journal of the American Medical Informatics Association : JAMIA | 37428897 | 2023 Sep 25 |
| Adeno-associated viral vectors for functional intravenous gene transfer throughout the non-human primate brain. | Chuapoco, Miguel R; Flytzanis, Nicholas C; Goeden, Nick; Christopher Octeau, J; Roxas, Kristina M; Chan, Ken Y; Scherrer, Jon; Winchester, Janet; Blackburn, Roy J; Campos, Lillian J; Man, Kwun Nok Mimi; Sun, Junqing; Chen, Xinhong; Lefevre, Arthur; Singh, Vikram Pal; Arokiaraj, Cynthia M; Shay, Timothy F; Vendemiatti, Julia; Jang, Min J; Mich, John K; Bishaw, Yemeserach; Gore, Bryan B; Omstead, Victoria; Taskin, Naz; Weed, Natalie; Levi, Boaz P; Ting, Jonathan T; Miller, Cory T; Deverman, Benjamin E; Pickel, James; Tian, Lin; Fox, Andrew S; Gradinaru, Viviana | Nature nanotechnology | 37430038 | 2023 Oct |
| LY6E is a pan-coronavirus restriction factor in the respiratory tract. | Mar, Katrina B; Wells, Alexandra I; Caballero Van Dyke, Marley C; Lopez, Alexandra H; Eitson, Jennifer L; Fan, Wenchun; Hanners, Natasha W; Evers, Bret M; Shelton, John M; Schoggins, John W | Nature microbiology | 37443277 | 2023 Aug |
| Mesenchymal Vangl facilitates airway elongation and widening independently of the planar cell polarity complex. | Paramore, Sarah V; Goodwin, Katharine; Devenport, Danelle; Nelson, Celeste M | bioRxiv : the preprint server for biology | 37461477 | 2023 Jul 03 |
| Resting-state background features demonstrate multidien cycles in long-term EEG device recordings. | Ojemann, William K S; Scheid, Brittany H; Mouchtaris, Sofia; Lucas, Alfredo; LaRocque, Joshua J; Aguila, Carlos; Ashourvan, Arian; Caciagli, Lorenzo; Davis, Kathryn A; Conrad, Erin C; Litt, Brian | medRxiv : the preprint server for health sciences | 37461688 | 2023 Jul 07 |
| A cell-type-specific error-correction signal in the posterior parietal cortex. | Green, Jonathan; Bruno, Carissa A; Traunmüller, Lisa; Ding, Jennifer; Hrvatin, Siniša; Wilson, Daniel E; Khodadad, Thomas; Samuels, Jonathan; Greenberg, Michael E; Harvey, Christopher D | Nature | 37468637 | 2023 Aug |
| An adaptive behavioral control motif mediated by cortical axo-axonic inhibition. | Jung, Kanghoon; Chang, Minhyeok; Steinecke, André; Burke, Benjamin; Choi, Youngjin; Oisi, Yasuhiro; Fitzpatrick, David; Taniguchi, Hiroki; Kwon, Hyung-Bae | Nature neuroscience | 37474640 | 2023 Aug |
| Acetylation of the NS3 helicase by KAT5γ is essential for flavivirus replication. | Serman, Taryn; Chiang, Cindy; Liu, GuanQun; Sayyad, Zuberwasim; Pandey, Shanti; Volcic, Meta; Lee, Haejeong; Muppala, Santoshi; Acharya, Dhiraj; Goins, Christopher; Stauffer, Shaun R; Sparrer, Konstantin M J; Gack, Michaela U | Cell host & microbe | 37478852 | 2023 Aug 09 |
| CD4+ T cells regulate sickness-induced anorexia and fat wasting during a chronic parasitic infection. | Redford, Samuel E; Varanasi, Siva Karthik; Sanchez, Karina K; Thorup, Natalia R; Ayres, Janelle S | Cell reports | 37490905 | 2023 Aug 29 |
| Modeling epigenetic lesions that cause gliomas. | Rahme, Gilbert J; Javed, Nauman M; Puorro, Kaitlyn L; Xin, Shouhui; Hovestadt, Volker; Johnstone, Sarah E; Bernstein, Bradley E | Cell | 37494934 | 2023 Aug 17 |
| Interferon inhibits a model RNA virus via a limited set of inducible effector genes. | McDougal, Matthew B; De Maria, Anthony M; Ohlson, Maikke B; Kumar, Ashwani; Xing, Chao; Schoggins, John W | EMBO reports | 37497756 | 2023 Sep 06 |
| Greengenes2 unifies microbial data in a single reference tree. | McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T; Nicolaou, Giorgia; Parks, Donovan H; Karst, Søren M; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havuli | Nature biotechnology | 37500913 | 2023 Jul 27 |
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| A natural bacterial pathogen of C. elegans uses a small RNA to induce transgenerational inheritance of learned avoidance. | Sengupta, Titas; St Ange, Jonathan; Moore, Rebecca; Kaletsky, Rachel; Marogi, Jacob; Myhrvold, Cameron; Gitai, Zemer; Murphy, Coleen T | bioRxiv : the preprint server for biology | 37503135 | 2023 Oct 17 |
| Hierarchical design of pseudosymmetric protein nanoparticles. | Baker, David; Dowling, Quinton; Park, Young-Jun; Gerstenmaier, Neil; Yang, Erin; Wargacki, Adam; Hsia, Yang; Fries, Chelsea; Ravichandran, Rashmi; Walkey, Carl; Burrell, Anika; Veesler, David; King, Neil | Research square | 37503272 | 2023 Jul 10 |
| Behavioral signatures of face perception emerge in deep neural networks optimized for face recognition. | Dobs, Katharina; Yuan, Joanne; Martinez, Julio; Kanwisher, Nancy | Proceedings of the National Academy of Sciences of the United States of America | 37523537 | 2023 Aug 08 |
| PhyloVelo enhances transcriptomic velocity field mapping using monotonically expressed genes. | Wang, Kun; Hou, Liangzhen; Wang, Xin; Zhai, Xiangwei; Lu, Zhaolian; Zi, Zhike; Zhai, Weiwei; He, Xionglei; Curtis, Christina; Zhou, Da; Hu, Zheng | Nature biotechnology | 37524958 | 2023 Jul 31 |
| The seizure severity score: a quantitative tool for comparing seizures and their response to therapy. | Pattnaik, Akash R; Ghosn, Nina J; Ong, Ian Z; Revell, Andrew Y; Ojemann, William K S; Scheid, Brittany H; Georgostathi, Georgia; Bernabei, John M; Conrad, Erin C; Sinha, Saurabh R; Davis, Kathryn A; Sinha, Nishant; Litt, Brian | Journal of neural engineering | 37531949 | 2023 Aug 10 |
| Exuberant de novo dendritic spine growth in mature neurons. | Krüssel, Sarah; Deb, Ishana; Son, Seungkyu; Ewall, Gabrielle; Chang, Minhyeok; Lee, Hey-Kyoung; do Heo, Won; Kwon, Hyung-Bae | bioRxiv : the preprint server for biology | 37546796 | 2023 Jul 25 |
| Competition between stochastic neuropeptide signals calibrates the rate of satiation. | Zhang, Stephen X; Kim, Angela; Madara, Joseph C; Zhu, Paula K; Christenson, Lauren F; Lutas, Andrew; Kalugin, Peter N; Jin, Yihan; Pal, Akash; Tian, Lin; Lowell, Bradford B; Andermann, Mark L | Research square | 37546985 | 2023 Jul 26 |
| Quantifying interictal intracranial EEG to predict focal epilepsy. | Gallagher, Ryan S; Sinha, Nishant; Pattnaik, Akash R; Ojemann, William K S; Lucas, Alfredo; LaRocque, Joshua J; Bernabei, John M; Greenblatt, Adam S; Sweeney, Elizabeth M; Chen, H Isaac; Davis, Kathryn A; Conrad, Erin C; Litt, Brian | ArXiv | 37547655 | 2023 Jul 27 |
| G-quadruplexes associated with R-loops promote CTCF binding. | Wulfridge, Phillip; Yan, Qingqing; Rell, Nathaniel; Doherty, John; Jacobson, Skye; Offley, Sarah; Deliard, Sandra; Feng, Kelly; Phillips-Cremins, Jennifer E; Gardini, Alessandro; Sarma, Kavitha | Molecular cell | 37552993 | 2023 Sep 07 |
| spinDrop: a droplet microfluidic platform to maximise single-cell sequencing information content. | De Jonghe, Joachim; Kaminski, Tomasz S; Morse, David B; Tabaka, Marcin; Ellermann, Anna L; Kohler, Timo N; Amadei, Gianluca; Handford, Charlotte E; Findlay, Gregory M; Zernicka-Goetz, Magdalena; Teichmann, Sarah A; Hollfelder, Florian | Nature communications | 37553326 | 2023 Aug 08 |
| Tle4 controls both developmental acquisition and early post-natal maturation of corticothalamic projection neuron identity. | Galazo, Maria J; Sweetser, David A; Macklis, Jeffrey D | Cell reports | 37561632 | 2023 Aug 29 |
| ISG15: its roles in SARS-CoV-2 and other viral infections. | Sarkar, Lucky; Liu, GuanQun; Gack, Michaela U | Trends in microbiology | 37573184 | 2023 Dec |
| Specific configurations of electrical synapses filter sensory information to drive choices in behavior. | Almoril-Porras, Agustin; Calvo, Ana C; Niu, Longgang; Beagan, Jonathan; Hawk, Josh D; Aljobeh, Ahmad; Wisdom, Elias M; Ren, Ivy; Díaz-García, Malcom; Wang, Zhao-Wen; Colón-Ramos, Daniel A | bioRxiv : the preprint server for biology | 37577611 | 2023 Aug 03 |
| A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data. | Zuffa, Simone; Schmid, Robin; Bauermeister, Anelize; Gomes, Paulo Wender P; Caraballo-Rodriguez, Andres M; Abiead, Yasin El; Aron, Allegra T; Gentry, Emily C; Zemlin, Jasmine; Meehan, Michael J; Avalon, Nicole E; Cichewicz, Robert H; Buzun, Ekaterina; Terrazas, Marvic Carrillo; Hsu, Chia-Yun; Oles, Renee; Ayala, Adriana Vasquez; Zhao, Jiaqi; Chu, Hiutung; Kuijpers, Mirte C M; Jackrel, Sara L; Tugizimana, Fidele; Nephali, Lerato Pertunia; Dubery, Ian A; Madala, Ntakadzeni Edwin; Moreira, Eduarda Antunes; Costa-Lotufo, Leticia Veras; Lopes, Norberto Peporine; Rezende-Teixeira, Paula; Jimenez, Paula C; Rimal, Bipin; Patterson, Andrew D; Traxler, Matthew F; de Cassia Pessotti, Rita; Alvarado-Villalobos, Daniel; Tamayo-Castillo, Giselle; Chaverri, Priscila; Escudero-Leyva, Efrain; Quiros-Guerrero, Luis-Manuel; Bory, Alexandre Jean; Joubert, Juliette; Rutz, Adriano; Wolfender, Jean-Luc; Allard, Pierre-Marie; Sichert, Andreas; Pontrelli, Sammy; Pullman, Benjamin S; Bandeira, Nuno; Gerwick, William H; Gindro, Katia; Massana-Codina, Josep; Wagner, Berenike C; Forchhammer, Karl; Petras, Daniel; Aiosa, Nicole; Garg, Neha; Liebeke, Manuel; Bourceau, Patric; Kang, Kyo Bin; Gadhavi, Henna; de Carvalho, Luiz Pedro Sorio; Dos Santos, Mariana Silva; Pérez-Lorente, Alicia Isabel; Molina-Santiago, Carlos; Romero, Diego; Franke, Raimo; Brönstrup, Mark; de León, Arturo Vera Ponce; Pope, Phillip Byron; Rosa, Sabina Leanti La; Barbera, Giorgia La; Roager, Henrik M; Laursen, Martin Frederik; Hammerle, Fabian; Siewert, Bianka; Peintner, Ursula; Licona-Cassani, Cuauhtemoc; Rodriguez-Orduña, Lorena; Rampler, Evelyn; Hildebrand, Felina; Koellensperger, Gunda; Schoeny, Harald; Hohenwallner, Katharina; Panzenboeck, Lisa; Gregor, Rachel; O'Neill, Ellis Charles; Roxborough, Eve Tallulah; Odoi, Jane; Bale, Nicole J; Ding, Su; Sinninghe Damsté, Jaap S; Guan, Xueli Li; Cui, Jerry J; Ju, Kou-San; Silva, Denise Brentan; Silva, Fernanda Motta Ribeiro; da Silva, Gilvan Ferreira; Koolen, Hector H F; Grundmann, Carlismari; Clement, Jason A; Mohimani, Hosein; Broders, Kirk; McPhail, Kerry L; Ober-Singleton, Sidnee E; Rath, Christopher M; McDonald, Daniel; Knight, Rob; Wang, Mingxun; Dorrestein, Pieter C | Research square | 37577622 | 2023 Aug 03 |
| Sensitization of meningeal afferents to locomotion-related meningeal deformations in a migraine model. | Blaeser, Andrew S; Zhao, Jun; Sugden, Arthur U; Carneiro-Nascimento, Simone; Andermann, Mark L; Levy, Dan | bioRxiv : the preprint server for biology | 37577675 | 2023 Nov 28 |
| A novel immune modulator IM33 mediates a glia-gut-neuronal axis that controls lifespan. | Xu, Wangchao; Rustenhoven, Justin; Nelson, Christopher A; Dykstra, Taitea; Ferreiro, Aura; Papadopoulos, Zachary; Burnham, Carey-Ann D; Dantas, Gautam; Fremont, Daved H; Kipnis, Jonathan | Neuron | 37582366 | 2023 Oct 18 |
| Schizophrenia-associated somatic copy-number variants from 12,834 cases reveal recurrent NRXN1 and ABCB11 disruptions. | Maury, Eduardo A; Sherman, Maxwell A; Genovese, Giulio; Gilgenast, Thomas G; Kamath, Tushar; Burris, S J; Rajarajan, Prashanth; Flaherty, Erin; Akbarian, Schahram; Chess, Andrew; McCarroll, Steven A; Loh, Po-Ru; Phillips-Cremins, Jennifer E; Brennand, Kristen J; Macosko, Evan Z; Walters, James T R; O'Donovan, Michael; Sullivan, Patrick; Psychiatric Genomic Consortium Schizophrenia and CNV workgroup; Brain Somatic Mosaicism Network; Sebat, Jonathan; Lee, Eunjung A; Walsh, Christopher A | Cell genomics | 37601975 | 2023 Aug 09 |
| Epigenetic neural glioblastoma enhances synaptic integration and predicts therapeutic vulnerability. | Drexler, Richard; Khatri, Robin; Sauvigny, Thomas; Mohme, Malte; Maire, Cecile L; Ryba, Alice; Zghaibeh, Yahya; Dührsen, Lasse; Salviano-Silva, Amanda; Lamszus, Katrin; Westphal, Manfred; Gempt, Jens; Wefers, Annika K; Neumann, Julia; Bode, Helena; Hausmann, Fabian; Huber, Tobias B; Bonn, Stefan; Jütten, Kerstin; Delev, Daniel; Weber, Katharina J; Harter, Patrick N; Onken, Julia; Vajkoczy, Peter; Capper, David; Wiestler, Benedikt; Weller, Michael; Snijder, Berend; Buck, Alicia; Weiss, Tobias; Keough, Michael B; Ni, Lijun; Monje, Michelle; Silverbush, Dana; Hovestadt, Volker; Suvà, Mario L; Krishna, Saritha; Hervey-Jumper, Shawn L; Schüller, Ulrich; Heiland, Dieter H; Hänzelmann, Sonja; Ricklefs, Franz L | bioRxiv : the preprint server for biology | 37609137 | 2023 Aug 07 |
| Limitations of fluorescent timer protein maturation kinetics to isolate transcriptionally synchronized cortically differentiating human pluripotent stem cells. | Peter, Manuel; Shipman, Seth; Macklis, Jeffrey D | bioRxiv : the preprint server for biology | 37609140 | 2023 Aug 26 |
| Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression. | Fu, Ting; Huan, Tao; Rahman, Gibraan; Zhi, Hui; Xu, Zhenjiang; Oh, Tae Gyu; Guo, Jian; Coulter, Sally; Tripathi, Anupriya; Martino, Cameron; McCarville, Justin L; Zhu, Qiyun; Cayabyab, Fritz; Low, Brian; He, Mingxiao; Xing, Shipei; Vargas, Fernando; Yu, Ruth T; Atkins, Annette; Liddle, Christopher; Ayres, Janelle; Raffatellu, Manuela; Dorrestein, Pieter C; Downes, Michael; Knight, Rob; Evans, Ronald M | Cell reports | 37611587 | 2023 Aug 29 |
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| How can I measure brain acetylcholine levels in vivo? Advantages and caveats of commonly used approaches. | Mineur, Yann S; Picciotto, Marina R | Journal of neurochemistry | 37621094 | 2023 Oct |
| Development of nanoRibo-seq enables study of regulated translation by cortical neuron subtypes, showing uORF translation in synaptic-axonal genes. | Froberg, John E; Durak, Omer; Macklis, Jeffrey D | Cell reports | 37624698 | 2023 Sep 26 |
| Structure and design of Langya virus glycoprotein antigens. | Wang, Zhaoqian; McCallum, Matthew; Yan, Lianying; Sharkey, William; Park, Young-Jun; Dang, Ha V; Amaya, Moushimi; Person, Ashley; Broder, Christopher C; Veesler, David | bioRxiv : the preprint server for biology | 37645760 | 2023 Aug 26 |
| Lysosomal cystine governs ferroptosis sensitivity in cancer via cysteine stress response. | Swanda, Robert V; Ji, Quanquan; Wu, Xincheng; Yan, Jingyue; Dong, Leiming; Mao, Yuanhui; Uematsu, Saori; Dong, Yizhou; Qian, Shu-Bing | Molecular cell | 37647899 | 2023 Sep 21 |
| Neutralization, effector function and immune imprinting of Omicron variants. | Addetia, Amin; Piccoli, Luca; Case, James Brett; Park, Young-Jun; Beltramello, Martina; Guarino, Barbara; Dang, Ha; de Melo, Guilherme Dias; Pinto, Dora; Sprouse, Kaitlin; Scheaffer, Suzanne M; Bassi, Jessica; Silacci-Fregni, Chiara; Muoio, Francesco; Dini, Marco; Vincenzetti, Lucia; Acosta, Rima; Johnson, Daisy; Subramanian, Sambhavi; Saliba, Christian; Giurdanella, Martina; Lombardo, Gloria; Leoni, Giada; Culap, Katja; McAlister, Carley; Rajesh, Anushka; Dellota Jr, Exequiel; Zhou, Jiayi; Farhat, Nisar; Bohan, Dana; Noack, Julia; Chen, Alex; Lempp, Florian A; Quispe, Joel; Kergoat, Lauriane; Larrous, Florence; Cameroni, Elisabetta; Whitener, Bradley; Giannini, Olivier; Cippà, Pietro; Ceschi, Alessandro; Ferrari, Paolo; Franzetti-Pellanda, Alessandra; Biggiogero, Maira; Garzoni, Christian; Zappi, Stephanie; Bernasconi, Luca; Kim, Min Jeong; Rosen, Laura E; Schnell, Gretja; Czudnochowski, Nadine; Benigni, Fabio; Franko, Nicholas; Logue, Jennifer K; Yoshiyama, Courtney; Stewart, Cameron; Chu, Helen; Bourhy, Hervé; Schmid, Michael A; Purcell, Lisa A; Snell, Gyorgy; Lanzavecchia, Antonio; Diamond, Michael S; Corti, Davide; Veesler, David | Nature | 37648855 | 2023 Sep |
| A pentameric TRPV3 channel with a dilated pore. | Lansky, Shifra; Betancourt, John Michael; Zhang, Jingying; Jiang, Yining; Kim, Elizabeth D; Paknejad, Navid; Nimigean, Crina M; Yuan, Peng; Scheuring, Simon | Nature | 37648856 | 2023 Sep |
| Single-cell massively-parallel multiplexed microbial sequencing (M3-seq) identifies rare bacterial populations and profiles phage infection. | Wang, Bruce; Lin, Aaron E; Yuan, Jiayi; Novak, Katherine E; Koch, Matthias D; Wingreen, Ned S; Adamson, Britt; Gitai, Zemer | Nature microbiology | 37653008 | 2023 Oct |
| Specialized structure of neural population codes in parietal cortex outputs. | Safaai, Houman; Wang, Alice Y; Kira, Shinichiro; Malerba, Simone Blanco; Panzeri, Stefano; Harvey, Christopher D | bioRxiv : the preprint server for biology | 37662297 | 2023 Aug 26 |
| Local and dynamic regulation of neuronal glycolysis in vivo. | Wolfe, Aaron D; Koberstein, John N; Smith, Chadwick B; Stewart, Melissa L; Hammarlund, Marc; Hyman, Anthony; Stork, Philip Js; Goodman, Richard; Colón-Ramos, Daniel A | bioRxiv : the preprint server for biology | 37662365 | 2023 Aug 26 |
| Recommendations for the use of pediatric data in artificial intelligence and machine learning ACCEPT-AI. | Muralidharan, V; Burgart, A; Daneshjou, R; Rose, S | NPJ digital medicine | 37673925 | 2023 Sep 06 |
| Spatial patterning of energy metabolism during tissue morphogenesis. | Lemma, Bezia; Nelson, Celeste M | Current opinion in cell biology | 37696131 | 2023 Dec |
| Mitochondrial GTP metabolism controls reproductive aging in C. elegans. | Lee, Yi-Tang; Savini, Marzia; Chen, Tao; Yang, Jin; Zhao, Qian; Ding, Lang; Gao, Shihong Max; Senturk, Mumine; Sowa, Jessica N; Wang, Jue D; Wang, Meng C | Developmental cell | 37708895 | 2023 Dec 04 |
| Neuronal activation of Gαq EGL-30/GNAQ late in life rejuvenates cognition across species. | Stevenson, Morgan E; Bieri, Gregor; Kaletsky, Rachel; St Ange, Jonathan; Remesal, L; Pratt, Karishma J B; Zhou, Shiyi; Weng, Yifei; Murphy, Coleen T; Villeda, Saul A | Cell reports | 37713310 | 2023 Sep 26 |
| Neural circuitry for maternal oxytocin release induced by infant cries. | Valtcheva, Silvana; Issa, Habon A; Bair-Marshall, Chloe J; Martin, Kathleen A; Jung, Kanghoon; Zhang, Yiyao; Kwon, Hyung-Bae; Froemke, Robert C | Nature | 37730989 | 2023 Sep |
| Reproductive outcomes after pregnancy-induced displacement of preexisting microchimeric cells. | Shao, Tzu-Yu; Kinder, Jeremy M; Harper, Gavin; Pham, Giang; Peng, Yanyan; Liu, James; Gregory, Emily J; Sherman, Bryan E; Wu, Yuehong; Iten, Alexandra E; Hu, Yueh-Chiang; Russi, Abigail E; Erickson, John J; Miller-Handley, Hilary; Way, Sing Sing | Science (New York, N.Y.) | 37733857 | 2023 Sep 22 |
| A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids. | Sockell, Alexandra; Wong, Wing; Longwell, Scott; Vu, Thy; Karlsson, Kasper; Mokhtari, Daniel; Schaepe, Julia; Lo, Yuan-Hung; Cornelius, Vincent; Kuo, Calvin; Van Valen, David; Curtis, Christina; Fordyce, Polly M | Cell systems | 37734323 | 2023 Sep 20 |
| Detecting organelle-specific activity of potassium channels with a DNA nanodevice. | Anees, Palapuravan; Saminathan, Anand; Rozmus, Ezekiel R; Di, Anke; Malik, Asrar B; Delisle, Brian P; Krishnan, Yamuna | Nature biotechnology | 37735264 | 2023 Sep 21 |
| A DNA nanodevice for mapping sodium at single-organelle resolution. | Zou, Junyi; Mitra, Koushambi; Anees, Palapuravan; Oettinger, Daphne; Ramirez, Joseph R; Veetil, Aneesh Tazhe; Gupta, Priyanka Dutta; Rao, Rajini; Smith, Jayson J; Kratsios, Paschalis; Krishnan, Yamuna | Nature biotechnology | 37735265 | 2023 Sep 21 |
| Intrinsically disordered regions in TRPV2 mediate protein-protein interactions. | Sanganna Gari, Raghavendar R; Tagiltsev, Grigory; Pumroy, Ruth A; Jiang, Yining; Blackledge, Martin; Moiseenkova-Bell, Vera Y; Scheuring, Simon | Communications biology | 37736816 | 2023 Sep 22 |
| Non-destructive mapping of stress and strain in soft thin films through sound waves. | Li, Guo-Yang; Gower, Artur L; Destrade, Michel; Yun, Seok-Hyun | Communications physics | 37744302 | 2022 |
| Programmed Cell Death Modifies Neural Circuits and Tunes Intrinsic Behavior. | Kochersberger, Alison; Torkashvand, Mohammad Mahdi; Lee, Dongyeop; Baskoylu, Saba; Sengupta, Titas; Koonce, Noelle; Emerson, Chloe E; Patel, Nandan V; Colón-Ramos, Daniel; Flavell, Steven; Horvitz, H Robert; Venkatachalam, Vivek; Hammarlund, Marc | bioRxiv : the preprint server for biology | 37745399 | 2023 Sep 25 |
| Broad receptor tropism and immunogenicity of a clade 3 sarbecovirus. | Lee, Jimin; Zepeda, Samantha K; Park, Young-Jun; Taylor, Ashley L; Quispe, Joel; Stewart, Cameron; Leaf, Elizabeth M; Treichel, Catherine; Corti, Davide; King, Neil P; Starr, Tyler N; Veesler, David | bioRxiv : the preprint server for biology | 37745523 | 2023 Sep 13 |
| Efficacy of a Novel Electroconductive Matrix To Treat Muscle Atrophy and Fat Accumulation in Chronic Massive Rotator Cuff Tears of the Shoulder. | Shemshaki, Nikoo Saveh; Kan, Ho-Man; Barajaa, Mohammed A; Lebaschi, Amir; Otsuka, Takayoshi; Mishra, Neha; Nair, Lakshmi S; Laurencin, Cato T | ACS biomaterials science & engineering | 37769114 | 2023 Oct 09 |
| Streamlined and sensitive mono- and di-ribosome profiling in yeast and human cells. | Ferguson, Lucas; Upton, Heather E; Pimentel, Sydney C; Mok, Amanda; Lareau, Liana F; Collins, Kathleen; Ingolia, Nicholas T | Nature methods | 37783882 | 2023 Nov |
| Disparities in seizure outcomes revealed by large language models. | Xie, Kevin; Ojemann, William K S; Gallagher, Ryan S; Lucas, Alfredo; Hill, Chloé E; Hamilton, Roy H; Johnson, Kevin B; Roth, Dan; Litt, Brian; Ellis, Colin A | medRxiv : the preprint server for health sciences | 37790442 | 2023 Sep 22 |
| Functional analysis of Collagen 17a1: A genetic modifier of junctional epidermolysis bullosa in mice. | Sproule, Thomas J; Wilpan, Robert Y; Low, Benjamin E; Silva, Kathleen A; Reyon, Deepak; Joung, J Keith; Wiles, Michael V; Roopenian, Derry C; Sundberg, John P | PloS one | 37796769 | 2023 |
| Sleep and circadian rhythm disruption by NPTX2 loss of function. | Roh, Seung-Eon; Xiao, Meifang; Delgado, Ana; Kwak, Chuljung; Savonenko, Alena; Bakker, Arnold; Kwon, Hyung-Bae; Worley, Paul | bioRxiv : the preprint server for biology | 37808783 | 2023 Sep 27 |
| A concerted ATPase cycle of the protein transporter AAA-ATPase Bcs1. | Pan, Yangang; Zhan, Jingyu; Jiang, Yining; Xia, Di; Scheuring, Simon | Nature communications | 37821516 | 2023 Oct 11 |
| Supershear surface waves reveal prestress and anisotropy of soft materials. | Li, Guo-Yang; Feng, Xu; Ramier, Antoine; Yun, Seok-Hyun | Journal of the mechanics and physics of solids | 37828998 | 2022 Dec |
| Nicotine addiction: More than just dopamine. | Kim, Kristen; Picciotto, Marina R | Current opinion in neurobiology | 37832393 | 2023 Dec |
| Profibrotic COVID-19 subphenotype exhibits enhanced localized ER-dependent HSP47+ expression in cardiac myofibroblasts in situ. | Jacobs, Elizabeth R; Ross, Gracious R; Padilla, Nathan; Pan, Amy Y; Liegl, Melodee; Puzyrenko, Andrii; Lai, Shuping; Dai, Qiang; Uche, Nnamdi; Rubenstein, Jason C; North, Paula E; Ibrahim, El-Sayed H; Sun, Yunguang; Felix, Juan C; Rui, Hallgeir; Benjamin, Ivor J | Journal of molecular and cellular cardiology | 37839656 | 2023 Dec |
| Molecular mechanisms controlling the biogenesis of the TGF-β signal Vg1. | Dingal, P C Dave P; Carte, Adam N; Montague, Tessa G; Lim Suan Jr, Medel B; Schier, Alexander F | Proceedings of the National Academy of Sciences of the United States of America | 37844219 | 2023 Oct 24 |
| The chemistry of next-generation sequencing. | Rodriguez, Raphaël; Krishnan, Yamuna | Nature biotechnology | 37845570 | 2023 Dec |
| Regulatory T cell-like response to SARS-CoV-2 in Jamaican fruit bats (Artibeus jamaicensis) transduced with human ACE2. | Burke, Bradly; Rocha, Savannah M; Zhan, Shijun; Eckley, Miles; Reasoner, Clara; Addetia, Amin; Lewis, Juliette; Fagre, Anna; Charley, Phillida A; Richt, Juergen A; Weiss, Susan R; Tjalkens, Ronald B; Veesler, David; Aboellail, Tawfik; Schountz, Tony | PLoS pathogens | 37856551 | 2023 Oct |
| Neuron-oligodendroglial interactions in health and malignant disease. | Taylor, Kathryn R; Monje, Michelle | Nature reviews. Neuroscience | 37857838 | 2023 Dec |
| Bayesian Surprise Predicts Human Event Segmentation in Story Listening. | Kumar, Manoj; Goldstein, Ariel; Michelmann, Sebastian; Zacks, Jeffrey M; Hasson, Uri; Norman, Kenneth A | Cognitive science | 37867379 | 2023 Oct |
| How a speaker herds the audience: Multi-brain neural convergence over time during naturalistic storytelling. | Chang, Claire H C; Nastase, Samuel A; Hasson, Uri | bioRxiv : the preprint server for biology | 37873125 | 2023 Oct 11 |
| Retrosplenial inputs drive diverse visual representations in the medial entorhinal cortex. | Dubanet, Olivier; Higley, Michael J | bioRxiv : the preprint server for biology | 37873152 | 2023 Oct 04 |
| Kruppel-like factor 2+ CD4 T cells avert microbiota-induced intestinal inflammation. | Shao, Tzu-Yu; Jiang, Tony T; Stevens, Joseph; Russi, Abigail E; Troutman, Ty D; Bernieh, Anas; Pham, Giang; Erickson, John J; Eshleman, Emily M; Alenghat, Theresa; Jameson, Stephen C; Hogquist, Kristin A; Weaver, Casey T; Haslam, David B; Deshmukh, Hitesh | Cell reports | 37889750 | 2023 Nov 28 |
| Hyaluronic acid-British anti-Lewisite as a safer chelation therapy for the treatment of arthroplasty-related metallosis. | Ude, Chinedu C; Schmidt, Stephen J; Laurencin, Samuel; Shah, Shiv; Esdaille, Jayson; Kan, Ho-Man; Holt, Brian D; Arnold, Anne M; Wolf, Michelle E; Nair, Lakshmi S; Sydlik, Stefanie A; Laurencin, Cato T | Proceedings of the National Academy of Sciences of the United States of America | 37903261 | 2023 Nov 07 |
| Design of universal Ebola virus vaccine candidates via immunofocusing. | Xu, Duo; Powell, Abigail E; Utz, Ashley; Sanyal, Mrinmoy; Do, Jonathan; Patten, J J; Moliva, Juan I; Sullivan, Nancy J; Davey, Robert A; Kim, Peter S | bioRxiv : the preprint server for biology | 37904982 | 2023 Oct 17 |
| Glioma synapses recruit mechanisms of adaptive plasticity. | Taylor, Kathryn R; Barron, Tara; Hui, Alexa; Spitzer, Avishay; Yalçin, Belgin; Ivec, Alexis E; Geraghty, Anna C; Hartmann, Griffin G; Arzt, Marlene; Gillespie, Shawn M; Kim, Yoon Seok; Maleki Jahan, Samin; Zhang, Helena; Shamardani, Kiarash; Su, Minhui; N | Nature | 37914930 | 2023 Nov |
| A neurodegeneration checkpoint mediated by REST protects against the onset of Alzheimer's disease. | Aron, Liviu; Qiu, Chenxi; Ngian, Zhen Kai; Liang, Marianna; Drake, Derek; Choi, Jaejoon; Fernandez, Marty A; Roche, Perle; Bunting, Emma L; Lacey, Ella K; Hamplova, Sara E; Yuan, Monlan; Wolfe, Michael S; Bennett, David A; Lee, Eunjung A; Yankner, Bruce A | Nature communications | 37919281 | 2023 Nov 02 |
| Overall, Direct, Spillover, and Composite Effects of Components of a Peer-Driven Intervention Package on Injection Risk Behavior Among People Who Inject Drugs in the HPTN 037 Study. | Hernández-Ramírez, Raúl U; Spiegelman, Donna; Lok, Judith J; Forastiere, Laura; Friedman, Samuel R; Latkin, Carl A; Vermund, Sten H; Buchanan, Ashley L | AIDS and behavior | 37932493 | 2023 Nov 07 |
| Bacterial viability in the built environment of the home. | Xie, Joy; Acosta, Ellen M; Gitai, Zemer | PloS one | 37939059 | 2023 |
| Ensuring Equitable Access to Patient Portals-Closing the "Techquity" Gap. | Johnson, Kevin B; Ibrahim, Said A; Rosenbloom, S Trent | JAMA health forum | 37948065 | 2023 Nov 03 |
| The FXR1 network acts as signaling scaffold for actomyosin remodeling. | Chen, Xiuzhen; Fansler, Mervin M; Janjoš, Urška; Ule, Jernej; Mayr, Christine | bioRxiv : the preprint server for biology | 37961296 | 2023 Nov 05 |
| One-carbon unit supplementation fuels tumor-infiltrating T cells and augments checkpoint blockade. | Xu, Xincheng; Chen, Zihong; Bartman, Caroline R; Xing, Xi; Olszewski, Kellen; Rabinowitz, Joshua D | bioRxiv : the preprint server for biology | 37961420 | 2023 Nov 03 |
| Programs, Origins, and Niches of Immunomodulatory Myeloid Cells in Gliomas. | Miller, Tyler E; El Farran, Chadi A; Couturier, Charles P; Chen, Zeyu; D'Antonio, Joshua P; Verga, Julia; Villanueva, Martin A; Castro, L Nicolas Gonzalez; Tong, Yuzhou Evelyn; Saadi, Tariq Al; Chiocca, Andrew N; Fischer, David S; Heiland, Dieter Henrik; Guerriero, Jennifer L; Petrecca, Kevin; Suva, Mario L; Shalek, Alex K; Bernstein, Bradley E | bioRxiv : the preprint server for biology | 37961527 | 2023 Oct 27 |
| CHEX-seq detects single-cell genomic single-stranded DNA with catalytical potential. | Lu, Youtao; Lee, Jaehee; Li, Jifen; Allu, Srinivasa Rao; Wang, Jinhui; Kim, HyunBum; Bullaughey, Kevin L; Fisher, Stephen A; Nordgren, C Erik; Rosario, Jean G; Anderson, Stewart A; Ulyanova, Alexandra V; Brem, Steven; Chen, H Isaac; Wolf, John A; Grady, M Sean; Vinogradov, Sergei A; Kim, Junhyong; Eberwine, James | Nature communications | 37963886 | 2023 Nov 14 |
| Specific and comprehensive genetic targeting reveals brain-wide distribution and synaptic input patterns of GABAergic axo-axonic interneurons. | Raudales, Ricardo; Kim, Gukhan; Kelly, Sean M; Hatfield, Joshua; Guan, Wuqiang; Zhao, Shengli; Paul, Anirban; Qian, Yongjun; Li, Bo; Huang, Z Josh | bioRxiv : the preprint server for biology | 37986757 | 2023 Nov 07 |
| Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopy. | Guo, Min; Wu, Yicong; Su, Yijun; Qian, Shuhao; Krueger, Eric; Christensen, Ryan; Kroeschell, Grant; Bui, Johnny; Chaw, Matthew; Zhang, Lixia; Liu, Jiamin; Hou, Xuekai; Han, Xiaofei; Ma, Xuefei; Zhovmer, Alexander; Combs, Christian; Moyle, Mark; Yemini, Eviatar; Liu, Huafeng; Liu, Zhiyi; La Riviere, Patrick; Colón-Ramos, Daniel; Shroff, Hari | bioRxiv : the preprint server for biology | 37986950 | 2023 Oct 24 |
| Broad receptor tropism and immunogenicity of a clade 3 sarbecovirus. | Lee, Jimin; Zepeda, Samantha K; Park, Young-Jun; Taylor, Ashley L; Quispe, Joel; Stewart, Cameron; Leaf, Elizabeth M; Treichel, Catherine; Corti, Davide; King, Neil P; Starr, Tyler N; Veesler, David | Cell host & microbe | 37989312 | 2023 Dec 13 |
| Sensory cortical ensembles exhibit differential coupling to ripples in distinct hippocampal subregions. | Jeong, Huijeong; Namboodiri, Vijay Mohan K; Jung, Min Whan; Andermann, Mark L | Current biology : CB | 37995696 | 2023 Dec 04 |
| Fluoxetine promotes immunometabolic defenses to mediate host-pathogen cooperation during sepsis. | Gallant, Robert M; Snyder, Jessica M; Ayres, Janelle S | bioRxiv : the preprint server for biology | 38013994 | 2023 Nov 18 |
| Full-spike deep mutational scanning helps predict the evolutionary success of SARS-CoV-2 clades. | Dadonaite, Bernadeta; Brown, Jack; McMahon, Teagan E; Farrell, Ariana G; Asarnow, Daniel; Stewart, Cameron; Logue, Jenni; Murrell, Ben; Chu, Helen Y; Veesler, David; Bloom, Jesse D | bioRxiv : the preprint server for biology | 38014024 | 2023 Nov 14 |
| A spatially-resolved transcriptional atlas of the murine dorsal pons at single-cell resolution. | Nardone, Stefano; De Luca, Roberto; Zito, Antonino; Klymko, Nataliya; Nicoloutsopoulos, Dimitris; Amsalem, Oren; Brannigan, Cory; Resch, Jon M; Jacobs, Christopher L; Pant, Deepti; Veregge, Molly; Srinivasan, Harini; Grippo, Ryan M; Yang, Zongfang; Zeidel, Mark L; Andermann, Mark L; Harris, Kenneth D; Tsai, Linus T; Arrigoni, Elda; Verstegen, Anne M J; Saper, Clifford B; Lowell, Bradford B | bioRxiv : the preprint server for biology | 38014113 | 2023 Nov 17 |
| Life, the genome and everything. | Rosenberg, Susan M | Journal of bacteriology | 38018999 | 2023 Dec 19 |
| Facile layer-by-layer fabrication of semiconductor microdisk laser particles. | Dannenberg, Paul H; Liapis, Andreas C; Martino, Nicola; Sarkar, Debarghya; Kim, Kwon-Hyeon; Yun, Seok-Hyun | APL photonics | 38031595 | 2023 Feb |
| Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut Microbiome. | Olm, Matthew R; Spencer, Sean P; Silva, Evelyn Lemus; Sonnenburg, Justin L | bioRxiv : the preprint server for biology | 38045399 | 2023 Nov 21 |
| USP16 is an ISG15 cross-reactive deubiquitinase that targets pro-ISG15 and ISGylated proteins involved in metabolism. | Gan, Jin; Pinto-Fernández, Adán; Flierman, Dennis; Akkermans, Jimmy J L L; O'Brien, Darragh P; Greenwood, Helene; Scott, Hannah Claire; Fritz, Günter; Knobeloch, Klaus-Peter; Neefjes, Jacques; van Dam, Hans; Ovaa, Huib; Ploegh, Hidde L; Kessler, Benedikt M; Geurink, Paul P; Sapmaz, Aysegul | Proceedings of the National Academy of Sciences of the United States of America | 38055744 | 2023 Dec 12 |
| Persistent immune imprinting after XBB.1.5 COVID vaccination in humans. | Tortorici, M Alejandra; Addetia, Amin; Seo, Albert J; Brown, Jack; Sprouse, Kaitlin R; Logue, Jenni; Clark, Erica; Franko, Nicholas; Chu, Helen; Veesler, David | bioRxiv : the preprint server for biology | 38076876 | 2023 Nov 30 |
| Investigating the Influence of Heterogeneity Within Cell Types on Microvessel Network Transport. | Nan, Junyu; Roychowdhury, Sayan; Randles, Amanda | Cellular and molecular bioengineering | 38099216 | 2023 Dec |
| Atypical activation of the RNA sensor MDA5 by hepatitis C virus. | Chakraborty, Surajit; Zhu, Junji; Gack, Michaela U | The FEBS journal | 38102741 | 2023 Dec 15 |
| Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation. | Titus, Katelyn R; Simandi, Zoltan; Chandrashekar, Harshini; Paquet, Dominik; Phillips-Cremins, Jennifer E | bioRxiv : the preprint server for biology | 38106199 | 2023 Dec 05 |
| Modulating cell signalling in vivo with magnetic nanotransducers. | Romero, Gabriela; Park, Jimin; Koehler, Florian; Pralle, Arnd; Anikeeva, Polina | Nature reviews. Methods primers | 38111858 | 2022 |
| Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome. | Malachowski, Thomas; Chandradoss, Keerthivasan Raanin; Boya, Ravi; Zhou, Linda; Cook, Ashley L; Su, Chuanbin; Pham, Kenneth; Haws, Spencer A; Kim, Ji Hun; Ryu, Han-Seul; Ge, Chunmin; Luppino, Jennifer M; Nguyen, Son C; Titus, Katelyn R; Gong, Wanfeng; Wallace, Owen; Joyce, Eric F; Wu, Hao; Rojas, Luis Alejandro; Phillips-Cremins, Jennifer E | Cell | 38134876 | 2023 Dec 21 |
| A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines. | Lee, Jimin; Stewart, Cameron; Schaefer, Alexandra; Leaf, Elizabeth M; Park, Young-Jun; Asarnow, Daniel; Powers, John M; Treichel, Catherine; Corti, Davide; Baric, Ralph; King, Neil P; Veesler, David | bioRxiv : the preprint server for biology | 38168207 | 2023 Dec 20 |
| Opposing effects of pre-existing antibody and memory T cell help on the dynamics of recall germinal centers. | Schiepers, Ariën; van 't Wout, Marije F L; Hobbs, Alvaro; Mesin, Luka; Victora, Gabriel D | bioRxiv : the preprint server for biology | 38168231 | 2023 Dec 15 |
| Magnetoelectric Nanodiscs Enable Wireless Transgene-Free Neuromodulation. | Kim, Ye Ji; Driscoll, Nicolette; Kent, Noah; Paniagua, Emmanuel Vargas; Tabet, Anthony; Koehler, Florian; Manthey, Marie; Sahasrabudhe, Atharva; Signorelli, Lorenzo; Gregureć, Danijela; Anikeeva, Polina | bioRxiv : the preprint server for biology | 38234742 | 2023 Dec 25 |
| Multi-contrast high-field quality image synthesis for portable low-field MRI using generative adversarial networks and paired data. | Lucas, Alfredo; Campbell Arnold, T; Okar, Serhat V; Vadali, Chetan; Kawatra, Karan D; Ren, Zheng; Cao, Quy; Shinohara, Russell T; Schindler, Matthew K; Davis, Kathryn A; Litt, Brian; Reich, Daniel S; Stein, Joel M | medRxiv : the preprint server for health sciences | 38234785 | 2023 Dec 29 |
| Reprogramming neuroblastoma by diet-enhanced polyamine depletion. | Cherkaoui, Sarah; Yang, Lifeng; McBride, Matthew; Turn, Christina S; Lu, Wenyun; Eigenmann, Caroline; Allen, George E; Panasenko, Olesya O; Zhang, Lu; Vu, Annette; Liu, Kangning; Li, Yimei; Gandhi, Om H; Surrey, Lea; Wierer, Michael; White, Eileen; Rabino | bioRxiv : the preprint server for biology | 38260457 | 2024 Jan 08 |
| Transient cAMP production drives rapid and sustained spiking in brainstem parabrachial neurons to suppress feeding. | Singh Alvarado, Jonnathan; Lutas, Andrew; Madara, Joseph C; Isaac, Jeremiah; Lommer, Caroline; Massengill, Crystian; Andermann, Mark L | Neuron | 38417435 | 2024 Feb 21 |
| Disparities in seizure outcomes revealed by large language models. | Xie, Kevin; Ojemann, William K S; Gallagher, Ryan S; Shinohara, Russell T; Lucas, Alfredo; Hill, Chloé E; Hamilton, Roy H; Johnson, Kevin B; Roth, Dan; Litt, Brian; Ellis, Colin A | Journal of the American Medical Informatics Association : JAMIA | 38481027 | 2024 Mar 13 |
| Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice. | Gellman, Rebecca H; Olm, Matthew R; Terrapon, Nicolas; Enam, Fatima; Higginbottom, Steven K; Sonnenburg, Justin L; Sonnenburg, Erica D | Cell reports | 38510311 | 2023 Nov 28 |
