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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Authors Journal PubMedID Publication Date
The origins and functional effects of postzygotic mutations throughout the human life span. Rockweiler, Nicole B; Ramu, Avinash; Nagirnaja, Liina; Wong, Wing H; Noordam, Michiel J; Drubin, Casey W; Huang, Ni; Miller, Brian; Todres, Ellen Z; Vigh-Conrad, Katinka A; Zito, Antonino; Small, Kerrin S; Ardlie, Kristin G; Cohen, Barak A; Conrad, Donald F Science (New York, N.Y.) 37053313 2023 Apr 14
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models. Rozowsky, Joel; Gao, Jiahao; Borsari, Beatrice; Yang, Yucheng T; Galeev, Timur; Gürsoy, Gamze; Epstein, Charles B; Xiong, Kun; Xu, Jinrui; Li, Tianxiao; Liu, Jason; Yu, Keyang; Berthel, Ana; Chen, Zhanlin; Navarro, Fabio; Sun, Maxwell S; Wright, James; Chang, Justin; Cameron, Christopher J F; Shoresh, Noam; Gaskell, Elizabeth; Drenkow, Jorg; Adrian, Jessika; Aganezov, Sergey; Aguet, François; Balderrama-Gutierrez, Gabriela; Banskota, Samridhi; Corona, Guillermo Barreto; Chee, Sora; Chhetri, Surya B; Cortez Martins, Gabriel Conte; Danyko, Cassidy; Davis, Carrie A; Farid, Daniel; Farrell, Nina P; Gabdank, Idan; Gofin, Yoel; Gorkin, David U; Gu, Mengting; Hecht, Vivian; Hitz, Benjamin C; Issner, Robbyn; Jiang, Yunzhe; Kirsche, Melanie; Kong, Xiangmeng; Lam, Bonita R; Li, Shantao; Li, Bian; Li, Xiqi; Lin, Khine Zin; Luo, Ruibang; Mackiewicz, Mark; Meng, Ran; Moore, Jill E; Mudge, Jonathan; Nelson, Nicholas; Nusbaum, Chad; Popov, Ioann; Pratt, Henry E; Qiu, Yunjiang; Ramakrishnan, Srividya; Raymond, Joe; Salichos, Leonidas; Scavelli, Alexandra; Schreiber, Jacob M; Sedlazeck, Fritz J; See, Lei Hoon; Sherman, Rachel M; Shi, Xu; Shi, Minyi; Sloan, Cricket Alicia; Strattan, J Seth; Tan, Zhen; Tanaka, Forrest Y; Vlasova, Anna; Wang, Jun; Werner, Jonathan; Williams, Brian; Xu, Min; Yan, Chengfei; Yu, Lu; Zaleski, Christopher; Zhang, Jing; Ardlie, Kristin; Cherry, J Michael; Mendenhall, Eric M; Noble, William S; Weng, Zhiping; Levine, Morgan E; Dobin, Alexander; Wold, Barbara; Mortazavi, Ali; Ren, Bing; Gillis, Jesse; Myers, Richard M; Snyder, Michael P; Choudhary, Jyoti; Milosavljevic, Aleksandar; Schatz, Michael C; Bernstein, Bradley E; Guigó, Roderic; Gingeras, Thomas R; Gerstein, Mark Cell 37001506 2023 Mar 30
Hypotheses on a tree: new error rates and testing strategies. Bogomolov, Marina; Peterson, Christine B; Benjamini, Yoav; Sabatti, Chiara Biometrika 36825068 2021 Sep
Day-night and seasonal variation of human gene expression across tissues. Wucher, Valentin; Sodaei, Reza; Amador, Raziel; Irimia, Manuel; Guigó, Roderic PLoS biology 36745672 2023 Feb
DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits. Oliva, Meritxell; Demanelis, Kathryn; Lu, Yihao; Chernoff, Meytal; Jasmine, Farzana; Ahsan, Habibul; Kibriya, Muhammad G; Chen, Lin S; Pierce, Brandon L Nature genetics 36510025 2022 Dec 12
Leveraging pleiotropy for joint analysis of genome-wide association studies with per trait interpretations. Taraszka, Kodi; Zaitlen, Noah; Eskin, Eleazar PLoS genetics 36342933 2022 Nov
The landscape of hervRNAs transcribed from human endogenous retroviruses across human body sites. She, Jianqi; Du, Minghao; Xu, Zhanzhan; Jin, Yueqi; Li, Yu; Zhang, Daoning; Tao, Changyu; Chen, Jian; Wang, Jiadong; Yang, Ence Genome biology 36329469 2022 Nov 03
RNA editing underlies genetic risk of common inflammatory diseases. Li, Qin; Gloudemans, Michael J; Geisinger, Jonathan M; Fan, Boming; Aguet, François; Sun, Tao; Ramaswami, Gokul; Li, Yang I; Ma, Jin-Biao; Pritchard, Jonathan K; Montgomery, Stephen B; Li, Jin Billy Nature 35922514 2022 08
Identification of human mitochondrial RNA cleavage sites and candidate RNA processing factors. Carbajosa, Guillermo; Ali, Aminah T; Hodgkinson, Alan BMC biology 35869520 2022 07 22
Estimating and accounting for unobserved covariates in high-dimensional correlated data. McKennan, Chris; Nicolae, Dan Journal of the American Statistical Association 35615339 2022
A comprehensive atlas of fetal splicing patterns in the brain of adult myotonic dystrophy type 1 patients. Degener, Max J F; van Cruchten, Remco T P; Otero, Brittney A; Wang, Eric T; Wansink, Derick G; 't Hoen, Peter A C NAR genomics and bioinformatics 35274098 2022 Mar
Mitochondrial-nuclear epistasis underlying phenotypic variation in breast cancer pathology. Bushel, Pierre R; Ward, James; Burkholder, Adam; Li, Jianying; Anchang, Benedict Scientific reports 35082309 2022 01 26
A de novo paradigm for male infertility. Oud, M S; Smits, R M; Smith, H E; Mastrorosa, F K; Holt, G S; Houston, B J; de Vries, P F; Alobaidi, B K S; Batty, L E; Ismail, H; Greenwood, J; Sheth, H; Mikulasova, A; Astuti, G D N; Gilissen, C; McEleny, K; Turner, H; Coxhead, J; Cockell, S; Braat, D D Nature communications 35013161 2022 Jan 10
Mitochondrial-nuclear cross-talk in the human brain is modulated by cell type and perturbed in neurodegenerative disease. Fairbrother-Browne, Aine; Ali, Aminah T; Reynolds, Regina H; Garcia-Ruiz, Sonia; Zhang, David; Chen, Zhongbo; Ryten, Mina; Hodgkinson, Alan Communications biology 34737414 2021 Nov 04
Identifying causal variants by fine mapping across multiple studies. LaPierre, Nathan; Taraszka, Kodi; Huang, Helen; He, Rosemary; Hormozdiari, Farhad; Eskin, Eleazar PLoS genetics 34543273 2021 Sep
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. Võsa, Urmo; Claringbould, Annique; Westra, Harm-Jan; Bonder, Marc Jan; Deelen, Patrick; Zeng, Biao; Kirsten, Holger; Saha, Ashis; Kreuzhuber, Roman; Yazar, Seyhan; Brugge, Harm; Oelen, Roy; de Vries, Dylan H; van der Wijst, Monique G P; Kasela, Silva; Per Nature genetics 34475573 2021 09
Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples. Nadel, Brian B; Oliva, Meritxell; Shou, Benjamin L; Mitchell, Keith; Ma, Feiyang; Montoya, Dennis J; Mouton, Alice; Kim-Hellmuth, Sarah; Stranger, Barbara E; Pellegrini, Matteo; Mangul, Serghei Briefings in bioinformatics 34346485 2021 11 05
Mapping the miRNA-mRNA Interactome in Human Hepatocytes and Identification of Functional mirSNPs in Pharmacogenes. Powell, Nicholas R; Zhao, Harrison; Ipe, Joseph; Liu, Yunlong; Skaar, Todd C Clinical pharmacology and therapeutics 34314509 2021 10
Genetic drivers of m6A methylation in human brain, lung, heart and muscle. Xiong, Xushen; Hou, Lei; Park, Yongjin P; Molinie, Benoit; GTEx Consortium; Gregory, Richard I; Kellis, Manolis Nature genetics 34211177 2021 Jul 01
AdaTiSS: a novel data-Adaptive robust method for identifying Tissue Specificity Scores. Wang, Meng; Jiang, Lihua; Snyder, Michael P Bioinformatics (Oxford, England) 34146104 2021 Dec 07
Feasibility of predicting allele specific expression from DNA sequencing using machine learning. Zhang, Zhenhua; van Dijk, Freerk; de Klein, Niek; van Gijn, Mariëlle E; Franke, Lude H; Sinke, Richard J; Swertz, Morris A; van der Velde, K Joeri Scientific reports 34012022 2021 May 19
Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease. de Goede, Olivia M; Nachun, Daniel C; Ferraro, Nicole M; Gloudemans, Michael J; Rao, Abhiram S; Smail, Craig; Eulalio, Tiffany Y; Aguet, François; Ng, Bernard; Xu, Jishu; Barbeira, Alvaro N; Castel, Stephane E; Kim-Hellmuth, Sarah; Park, YoSon; Scott, Alexandra J; Strober, Benjamin J; GTEx Consortium; Brown, Christopher D; Wen, Xiaoquan; Hall, Ira M; Battle, Alexis; Lappalainen, Tuuli; Im, Hae Kyung; Ardlie, Kristin G; Mostafavi, Sara; Quertermous, Thomas; Kirkegaard, Karla; Montgomery, Stephen B Cell 33864768 2021 05 13
Day-night and seasonal variation of human gene expression across tissues. Wucher, Valentin; Sodaei, Reza; Amador, Raziel; Irimia, Manuel; Guigó, Roderic bioRxiv : the preprint server for biology 33688644 2021 Mar 01
Regulatory genomic circuitry of human disease loci by integrative epigenomics. Boix, Carles A; James, Benjamin T; Park, Yongjin P; Meuleman, Wouter; Kellis, Manolis Nature 33536621 2021 02
Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome. Garrido-Martín, Diego; Borsari, Beatrice; Calvo, Miquel; Reverter, Ferran; Guigó, Roderic Nature communications 33526779 2021 02 01
Exploiting the GTEx resources to decipher the mechanisms at GWAS loci. Barbeira, Alvaro N; Bonazzola, Rodrigo; Gamazon, Eric R; Liang, Yanyu; Park, YoSon; Kim-Hellmuth, Sarah; Wang, Gao; Jiang, Zhuoxun; Zhou, Dan; Hormozdiari, Farhad; Liu, Boxiang; Rao, Abhiram; Hamel, Andrew R; Pividori, Milton D; Aguet, François; GTEx GWAS Genome biology 33499903 2021 01 26
Alterations observed in the interferon α and β signaling pathway in MDD patients are marginally influenced by cis-acting alleles. Magri, Chiara; Giacopuzzi, Edoardo; Sacco, Chiara; Bocchio-Chiavetto, Luisella; Minelli, Alessandra; Gennarelli, Massimo Scientific reports 33436853 2021 01 12
Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability. Lagou, Vasiliki; Mägi, Reedik; Hottenga, Jouke- Jan; Grallert, Harald; Perry, John R B; Bouatia-Naji, Nabila; Marullo, Letizia; Rybin, Denis; Jansen, Rick; Min, Josine L; Dimas, Antigone S; Ulrich, Anna; Zudina, Liudmila; Gådin, Jesper R; Jiang, Longda; Faggian, Alessia; Bonnefond, Amélie; Fadista, Joao; Stathopoulou, Maria G; Isaacs, Aaron; Willems, Sara M; Navarro, Pau; Tanaka, Toshiko; Jackson, Anne U; Montasser, May E; O'Connell, Jeff R; Bielak, Lawrence F; Webster, Rebecca J; Saxena, Richa; Stafford, Jeanette M; Pourcain, Beate St; Timpson, Nicholas J; Salo, Perttu; Shin, So-Youn; Amin, Najaf; Smith, Albert V; Li, Guo; Verweij, Niek; Goel, Anuj; Ford, Ian; Johnson, Paul C D; Johnson, Toby; Kapur, Karen; Thorleifsson, Gudmar; Strawbridge, Rona J; Rasmussen-Torvik, Laura J; Esko, Tõnu; Mihailov, Evelin; Fall, Tove; Fraser, Ross M; Mahajan, Anubha; Kanoni, Stavroula; Giedraitis, Vilmantas; Kleber, Marcus E; Silbernagel, Günther; Meyer, Julia; Müller-Nurasyid, Martina; Ganna, Andrea; Sarin, Antti-Pekka; Yengo, Loic; Shungin, Dmitry; Luan, Jian'an; Horikoshi, Momoko; An, Ping; Sanna, Serena; Boettcher, Yvonne; Rayner, N William; Nolte, Ilja M; Zemunik, Tatijana; Iperen, Erik van; Kovacs, Peter; Hastie, Nicholas D; Wild, Sarah H; McLachlan, Stela; Campbell, Susan; Polasek, Ozren; Carlson, Olga; Egan, Josephine; Kiess, Wieland; Willemsen, Gonneke; Kuusisto, Johanna; Laakso, Markku; Dimitriou, Maria; Hicks, Andrew A; Rauramaa, Rainer; Bandinelli, Stefania; Thorand, Barbara; Liu, Yongmei; Miljkovic, Iva; Lind, Lars; Doney, Alex; Perola, Markus; Hingorani, Aroon; Kivimaki, Mika; Kumari, Meena; Bennett, Amanda J; Groves, Christopher J; Herder, Christian; Koistinen, Heikki A; Kinnunen, Leena; Faire, Ulf de; Bakker, Stephan J L; Uusitupa, Matti; Palmer, Colin N A; Jukema, J Wouter; Sattar, Naveed; Pouta, Anneli; Snieder, Harold; Boerwinkle, Eric; Pankow, James S; Magnusson, Patrik K; Krus, Ulrika; Scapoli, Chiara; de Geus, Eco J C N; Blüher, Matthias; Wolffenbuttel, Bruce H R; Province, Michael A; Abecasis, Goncalo R; Meigs, James B; Hovingh, G Kees; Lindström, Jaana; Wilson, James F; Wright, Alan F; Dedoussis, George V; Bornstein, Stefan R; Schwarz, Peter E H; Tönjes, Anke; Winkelmann, Bernhard R; Boehm, Bernhard O; März, Winfried; Metspalu, Andres; Price, Jackie F; Deloukas, Panos; Körner, Antje; Lakka, Timo A; Keinanen-Kiukaanniemi, Sirkka M; Saaristo, Timo E; Bergman, Richard N; Tuomilehto, Jaakko; Wareham, Nicholas J; Langenberg, Claudia; Männistö, Satu; Franks, Paul W; Hayward, Caroline; Vitart, Veronique; Kaprio, Jaakko; Visvikis-Siest, Sophie; Balkau, Beverley; Altshuler, David; Rudan, Igor; Stumvoll, Michael; Campbell, Harry; van Duijn, Cornelia M; Gieger, Christian; Illig, Thomas; Ferrucci, Luigi; Pedersen, Nancy L; Pramstaller, Peter P; Boehnke, Michael; Frayling, Timothy M; Shuldiner, Alan R; Peyser, Patricia A; Kardia, Sharon L R; Palmer, Lyle J; Penninx, Brenda W; Meneton, Pierre; Harris, Tamara B; Navis, Gerjan; Harst, Pim van der; Smith, George Davey; Forouhi, Nita G; Loos, Ruth J F; Salomaa, Veikko; Soranzo, Nicole; Boomsma, Dorret I; Groop, Leif; Tuomi, Tiinamaija; Hofman, Albert; Munroe, Patricia B; Gudnason, Vilmundur; Siscovick, David S; Watkins, Hugh; Lecoeur, Cecile; Vollenweider, Peter; Franco-Cereceda, Anders; Eriksson, Per; Jarvelin, Marjo-Riitta; Stefansson, Kari; Hamsten, Anders; Nicholson, George; Karpe, Fredrik; Dermitzakis, Emmanouil T; Lindgren, Cecilia M; McCarthy, Mark I; Froguel, Philippe; Kaakinen, Marika A; Lyssenko, Valeriya; Watanabe, Richard M; Ingelsson, Erik; Florez, Jose C; Dupuis, Josée; Barroso, Inês; Morris, Andrew P; Prokopenko, Inga; Meta-Analyses of Glucose and Insulin-related traits Consortium (MAGIC) Nature communications 33402679 2021 01 05
RobNorm: model-based robust normalization method for labeled quantitative mass spectrometry proteomics data. Wang, Meng; Jiang, Lihua; Jian, Ruiqi; Chan, Joanne Y; Liu, Qing; Snyder, Michael P; Tang, Hua Bioinformatics (Oxford, England) 33098413 2021 May 05
Robust Huber-LASSO for improved prediction of protein, metabolite and gene expression levels relying on individual genotype data. Deutelmoser, Heike; Scherer, Dominique; Brenner, Hermann; Waldenberger, Melanie; INTERVAL study; Suhre, Karsten; Kastenmüller, Gabi; Lorenzo Bermejo, Justo Briefings in bioinformatics 33063116 2021 Jul 20
Pleiotropic Locus 15q24.1 Reveals a Gender-Specific Association with Neovascular but Not Atrophic Age-Related Macular Degeneration (AMD). Kiel, Christina; Strunz, Tobias; International Amd Genomics Consortium Project Manager Susan Blanton Iamdgc; Grassmann, Felix; Weber, Bernhard H F Cells. 33050031 2020 10 08;
Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D. Viñuela, Ana; Varshney, Arushi; van de Bunt, Martijn; Prasad, Rashmi B; Asplund, Olof; Bennett, Amanda; Boehnke, Michael; Brown, Andrew A; Erdos, Michael R; Fadista, João; Hansson, Ola; Hatem, Gad; Howald, Cédric; Iyengar, Apoorva K; Johnson, Paul; Krus, Nature communications. 32999275 2020 09 30;
Fine-mapping and QTL tissue-sharing information improves the reliability of causal gene identification. Barbeira, Alvaro N; Melia, Owen J; Liang, Yanyu; Bonazzola, Rodrigo; Wang, Gao; Wheeler, Heather E; Aguet, François; Ardlie, Kristin G; Wen, Xiaoquan; Im, Hae K Genetic epidemiology. 32964524 2020 Sep 10;
PhenomeXcan: Mapping the genome to the phenome through the transcriptome. Pividori, Milton; Rajagopal, Padma S; Barbeira, Alvaro; Liang, Yanyu; Melia, Owen; Bastarache, Lisa; Park, YoSon; Consortium, GTEx; Wen, Xiaoquan; Im, Hae K Science advances 32917697 2020 09
A Quantitative Proteome Map of the Human Body. Jiang, Lihua; Wang, Meng; Lin, Shin; Jian, Ruiqi; Li, Xiao; Chan, Joanne; Dong, Guanlan; Fang, Huaying; Robinson, Aaron E; GTEx Consortium; Snyder, Michael P Cell. 32916130 2020 Oct 01;
Genome-wide association study identifies novel single nucleotide polymorphisms having age-specific effect on prostate-specific antigen levels. Li, Weiqiang; Bicak, Mesude; Sjoberg, Daniel D; Vertosick, Emily; Dahlin, Anders; Melander, Olle; Ulmert, David; Lilja, Hans; Klein, Robert J The Prostate. 32914890 2020 Dec;
The GTEx Consortium atlas of genetic regulatory effects across human tissues. GTEx Consortium Science (New York, N.Y.). 32913098 2020 09 11;
Cell type-specific genetic regulation of gene expression across human tissues. Kim-Hellmuth, Sarah; Aguet, François; Oliva, Meritxell; Muñoz-Aguirre, Manuel; Kasela, Silva; Wucher, Valentin; Castel, Stephane E; Hamel, Andrew R; Viñuela, Ana; Roberts, Amy L; Mangul, Serghei; Wen, Xiaoquan; Wang, Gao; Barbeira, Alvaro N; Garrido-Martí Science (New York, N.Y.). 32913075 2020 09 11;
Determinants of telomere length across human tissues. Demanelis, Kathryn; Jasmine, Farzana; Chen, Lin S; Chernoff, Meytal; Tong, Lin; Delgado, Dayana; Zhang, Chenan; Shinkle, Justin; Sabarinathan, Mekala; Lin, Hannah; Ramirez, Eduardo; Oliva, Meritxell; Kim-Hellmuth, Sarah; Stranger, Barbara E; Lai, Tsung-Po Science (New York, N.Y.). 32913074 2020 09 11;
Transcriptomic signatures across human tissues identify functional rare genetic variation. Ferraro, Nicole M; Strober, Benjamin J; Einson, Jonah; Abell, Nathan S; Aguet, Francois; Barbeira, Alvaro N; Brandt, Margot; Bucan, Maja; Castel, Stephane E; Davis, Joe R; Greenwald, Emily; Hess, Gaelen T; Hilliard, Austin T; Kember, Rachel L; Kotis, Benc Science (New York, N.Y.). 32913073 2020 09 11;
The impact of sex on gene expression across human tissues. Oliva, Meritxell; Muñoz-Aguirre, Manuel; Kim-Hellmuth, Sarah; Wucher, Valentin; Gewirtz, Ariel D H; Cotter, Daniel J; Parsana, Princy; Kasela, Silva; Balliu, Brunilda; Viñuela, Ana; Castel, Stephane E; Mohammadi, Pejman; Aguet, François; Zou, Yuxin; Khram Science (New York, N.Y.). 32913072 2020 09 11;
A vast resource of allelic expression data spanning human tissues. Castel, Stephane E; Aguet, François; Mohammadi, Pejman; GTEx Consortium; Ardlie, Kristin G; Lappalainen, Tuuli Genome biology. 32912332 2020 Sep 11;
Metalign: efficient alignment-based metagenomic profiling via containment min hash. LaPierre, Nathan; Alser, Mohammed; Eskin, Eleazar; Koslicki, David; Mangul, Serghei Genome biology. 32912225 2020 09 10;
Low Baseline Pulmonary Levels of Cytotoxic Lymphocytes as a Predisposing Risk Factor for Severe COVID-19. Duijf, Pascal H G mSystems. 32873611 2020 Sep 01;
Mutation of CFAP57, a protein required for the asymmetric targeting of a subset of inner dynein arms in Chlamydomonas, causes primary ciliary dyskinesia. Bustamante-Marin, Ximena M; Horani, Amjad; Stoyanova, Mihaela; Charng, Wu-Lin; Bottier, Mathieu; Sears, Patrick R; Yin, Wei-Ning; Daniels, Leigh Anne; Bowen, Hailey; Conrad, Donald F; Knowles, Michael R; Ostrowski, Lawrence E; Zariwala, Maimoona A; Dutche PLoS genetics. 32764743 2020 08;
A limited set of transcriptional programs define major cell types. Breschi, Alessandra; Muñoz-Aguirre, Manuel; Wucher, Valentin; Davis, Carrie A; Garrido-Martín, Diego; Djebali, Sarah; Gillis, Jesse; Pervouchine, Dmitri D; Vlasova, Anna; Dobin, Alexander; Zaleski, Chris; Drenkow, Jorg; Danyko, Cassidy; Scavelli, Alexandr Genome research. 32759341 2020 Jul;
DCAF1 regulates Treg senescence via the ROS axis during immunological aging. Guo, Zengli; Wang, Gang; Wu, Bing; Chou, Wei-Chun; Cheng, Liang; Zhou, Chenlin; Lou, Jitong; Wu, Di; Su, Lishan; Zheng, Junnian; Ting, Jenny P-Y; Wan, Yisong Y The Journal of clinical investigation. 32730228 2020 Nov 02;
An enhanced machine learning tool for cis-eQTL mapping with regularization and confounder adjustments. Yan, Kang K; Zhao, Hongyu; Wu, Joseph T; Pang, Herbert Genetic epidemiology 32700329 2020 Nov
Sparse multi-output Gaussian processes for online medical time series prediction. Cheng, Li-Fang; Dumitrascu, Bianca; Darnell, Gregory; Chivers, Corey; Draugelis, Michael; Li, Kai; Engelhardt, Barbara E BMC medical informatics and decision making. 32641134 2020 Jul 08;
Baseline pulmonary levels of CD8+ T cells and NK cells inversely correlate with expression of the SARS-CoV-2 entry receptor ACE2. Duijf, Pascal H G bioRxiv : the preprint server for biology. 32511391 2020 May 05;
Analysis of Genetically Regulated Gene Expression Identifies a Prefrontal PTSD Gene, SNRNP35, Specific to Military Cohorts. Huckins, Laura M; Chatzinakos, Chris; Breen, Michael S; Hartmann, Jakob; Klengel, Torsten; da Silva Almeida, Ana C; Dobbyn, Amanda; Girdhar, Kiran; Hoffman, Gabriel E; Klengel, Claudia; Logue, Mark W; Lori, Adriana; Maihofer, Adam X; Morrison, Filomene G; Cell reports. 32492425 2020 Jun 02;
Genetic Determinants of Reduced Arsenic Metabolism Efficiency in the 10q24.32 Region Are Associated With Reduced AS3MT Expression in Multiple Human Tissue Types. Chernoff, Meytal; Tong, Lin; Demanelis, Kathryn; Vander Griend, Donald; Ahsan, Habib; Pierce, Brandon L Toxicological sciences : an official journal of the Society of Toxicology 32433756 2020 08 01
Analysis of mitochondrial m1A/G RNA modification reveals links to nuclear genetic variants and associated disease processes. Ali, Aminah Tasnim; Idaghdour, Youssef; Hodgkinson, Alan Communications biology 32221480 2020 03 27
A TESTING BASED APPROACH TO THE DISCOVERY OF DIFFERENTIALLY CORRELATED VARIABLE SETS. Bodwin, By Kelly; Zhang, Kai; Nobel, Andrew The annals of applied statistics. 31871518 2018 Jun;
Community Extraction in Multilayer Networks with Heterogeneous Community Structure. Wilson, James D; Palowitch, John; Bhamidi, Shankar; Nobel, Andrew B Journal of machine learning research : JMLR. 31871433 2017;
Leveraging allelic imbalance to refine fine-mapping for eQTL studies. Zou, Jennifer; Hormozdiari, Farhad; Jew, Brandon; Castel, Stephane E; Lappalainen, Tuuli; Ernst, Jason; Sul, Jae Hoon; Eskin, Eleazar PLoS genetics. 31834882 2019 12;
Identification of genetic variants in CFAP221 as a cause of primary ciliary dyskinesia. Bustamante-Marin, Ximena M; Shapiro, Adam; Sears, Patrick R; Charng, Wu-Lin; Conrad, Donald F; Leigh, Margaret W; Knowles, Michael R; Ostrowski, Lawrence E; Zariwala, Maimoona A Journal of human genetics. 31636325 2020 Jan;
Rare mutations in the complement regulatory gene CSMD1 are associated with male and female infertility. Lee, Arthur S; Rusch, Jannette; Lima, Ana C; Usmani, Abul; Huang, Ni; Lepamets, Maarja; Vigh-Conrad, Katinka A; Worthington, Ronald E; Mägi, Reedik; Wu, Xiaobo; Aston, Kenneth I; Atkinson, John P; Carrell, Douglas T; Hess, Rex A; O'Bryan, Moira K; Conrad, Donald F Nature communications. 31604923 2019 Oct 11;
Genetically Increased Telomere Length and Aging-Related Traits in the U.K. Biobank. Demanelis, Kathryn; Tong, Lin; Pierce, Brandon L The journals of gerontology. Series A, Biological sciences and medical sciences 31603979 2021 01 01
Inferred divergent gene regulation in archaic hominins reveals potential phenotypic differences. Colbran, Laura L; Gamazon, Eric R; Zhou, Dan; Evans, Patrick; Cox, Nancy J; Capra, John A Nature ecology & evolution. 31591491 2019 Oct 07;
Joint profiling of DNA methylation and chromatin architecture in single cells. Li, Guoqiang; Liu, Yaping; Zhang, Yanxiao; Kubo, Naoki; Yu, Miao; Fang, Rongxin; Kellis, Manolis; Ren, Bing Nature methods. 31384045 2019 Oct;
Identifying causal variants and genes using functional genomics in specialized cell types and contexts. Liu, Boxiang; Montgomery, Stephen B Human genetics. 31317254 2020 Jan;
Selection-adjusted inference: an application to confidence intervals for cis-eQTL effect sizes. Panigrahi, Snigdha; Zhu, Junjie; Sabatti, Chiara Biostatistics (Oxford, England) 31301173 2021 01 28
Unified single-cell analysis of testis gene regulation and pathology in five mouse strains. Jung, Min; Wells, Daniel; Rusch, Jannette; Ahmad, Suhaira; Marchini, Jonathan; Myers, Simon R; Conrad, Donald F eLife. 31237565 2019 Jun 25;
Challenges and recommendations to improve the installability and archival stability of omics computational tools. Mangul, Serghei; Mosqueiro, Thiago; Abdill, Richard J; Duong, Dat; Mitchell, Keith; Sarwal, Varuni; Hill, Brian; Brito, Jaqueline; Littman, Russell Jared; Statz, Benjamin; Lam, Angela Ka-Mei; Dayama, Gargi; Grieneisen, Laura; Martin, Lana S; Flint, Jonathan; Eskin, Eleazar; Blekhman, Ran PLoS biology. 31220077 2019 06;
MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples. LaPierre, Nathan; Mangul, Serghei; Alser, Mohammed; Mandric, Igor; Wu, Nicholas C; Koslicki, David; Eskin, Eleazar BMC genomics. 31167634 2019 Jun 06;
Genetic analyses of human fetal retinal pigment epithelium gene expression suggest ocular disease mechanisms. Liu, Boxiang; Calton, Melissa A; Abell, Nathan S; Benchorin, Gillie; Gloudemans, Michael J; Chen, Ming; Hu, Jane; Li, Xin; Balliu, Brunilda; Bok, Dean; Montgomery, Stephen B; Vollrath, Douglas Communications biology. 31123710 2019;
On Using Local Ancestry to Characterize the Genetic Architecture of Human Traits: Genetic Regulation of Gene Expression in Multiethnic or Admixed Populations. Zhong, Yizhen; Perera, Minoli A; Gamazon, Eric R American journal of human genetics. 31104770 2019 Jun 06;
Multi-tissue transcriptome analyses identify genetic mechanisms underlying neuropsychiatric traits. Gamazon, Eric R; Zwinderman, Aeilko H; Cox, Nancy J; Denys, Damiaan; Derks, Eske M Nature genetics. 31086352 2019 06;
Opportunities and challenges for transcriptome-wide association studies. Wainberg, Michael; Sinnott-Armstrong, Nasa; Mancuso, Nicholas; Barbeira, Alvaro N; Knowles, David A; Golan, David; Ermel, Raili; Ruusalepp, Arno; Quertermous, Thomas; Hao, Ke; Björkegren, Johan L M; Im, Hae Kyung; Pasaniuc, Bogdan; Rivas, Manuel A; Kundaje, Anshul Nature genetics. 30926968 2019 04;
Developing a network view of type 2 diabetes risk pathways through integration of genetic, genomic and functional data. Fernández-Tajes, Juan; Gaulton, Kyle J; van de Bunt, Martijn; Torres, Jason; Thurner, Matthias; Mahajan, Anubha; Gloyn, Anna L; Lage, Kasper; McCarthy, Mark I Genome medicine. 30914061 2019 03 26;
Significance-based community detection in weighted networks. Palowitch, John; Bhamidi, Shankar; Nobel, Andrew B Journal of machine learning research : JMLR. 30853860 2018 Apr;
Improving the usability and archival stability of bioinformatics software. Mangul, Serghei; Martin, Lana S; Eskin, Eleazar; Blekhman, Ran Genome biology. 30813962 2019 02 27;
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How to Map the Genetic Basis for Conditions that are Comorbid with Male Infertility. Nagirnaja, Liina; Vigh-Conrad, Katinka; Conrad, Donald F Seminars in reproductive medicine. 28658705 2017 05;
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Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues. Zhang, Mingfeng; Lykke-Andersen, Soren; Zhu, Bin; Xiao, Wenming; Hoskins, Jason W; Zhang, Xijun; Rost, Lauren M; Collins, Irene; Bunt, Martijn van de; Jia, Jinping; Parikh, Hemang; Zhang, Tongwu; Song, Lei; Jermusyk, Ashley; Chung, Charles C; Zhu, Bin; Zhou, Weiyin; Matters, Gail L; Kurtz, Robert C; Yeager, Meredith; Jensen, Torben Heick; Brown, Kevin M; Ongen, Halit; Bamlet, William R; Murray, Bradley A; McCarthy, Mark I; Chanock, Stephen J; Chatterjee, Nilanjan; Wolpin, Brian M; Smith, Jill P; Olson, Sara H; Petersen, Gloria M; Shi, Jianxin; Amundadottir, Laufey Gut. 28634199 2017 Jun 20;
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Clinical and Genome-Wide Analysis of Cisplatin-Induced Peripheral Neuropathy in Survivors of Adult-Onset Cancer. Dolan, M Eileen; El Charif, Omar; Wheeler, Heather E; Gamazon, Eric R; Ardeshir-Rouhani-Fard, Shirin; Monahan, Patrick; Feldman, Darren R; Hamilton, Robert J; Vaughn, David J; Beard, Clair J; Fung, Chunkit; Kim, Jeri; Fossa, Sophie D; Hertz, Daniel L; Mushiroda, Taisei; Kubo, Michiaki; Einhorn, Lawrence H; Cox, Nancy J; Travis, Lois B; Platinum Study Group Clinical cancer research : an official journal of the American Association for Cancer Research. 28611204 2017 Oct 01;
Protein-altering and regulatory genetic variants near GATA4 implicated in bicuspid aortic valve. Yang, Bo; Zhou, Wei; Jiao, Jiao; Nielsen, Jonas B; Mathis, Michael R; Heydarpour, Mahyar; Lettre, Guillaume; Folkersen, Lasse; Prakash, Siddharth; Schurmann, Claudia; Fritsche, Lars; Farnum, Gregory A; Lin, Maoxuan; Othman, Mohammad; Hornsby, Whitney; Driscoll, Anisa; Levasseur, Alexandra; Thomas, Marc; Farhat, Linda; Dubé, Marie-Pierre; Isselbacher, Eric M; Franco-Cereceda, Anders; Guo, Dong-Chuan; Bottinger, Erwin P; Deeb, G Michael; Booher, Anna; Kheterpal, Sachin; Chen, Y Eugene; Kang, Hyun Min; Kitzman, Jacob; Cordell, Heather J; Keavney, Bernard D; Goodship, Judith A; Ganesh, Santhi K; Abecasis, Gonçalo; Eagle, Kim A; Boyle, Alan P; Loos, Ruth J F; Eriksson, Per; Tardif, Jean-Claude; Brummett, Chad M; Milewicz, Dianna M; Body, Simon C; Willer, Cristen J Nature communications. 28541271 2017 May 25;
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Large, Diverse Population Cohorts of hiPSCs and Derived Hepatocyte-like Cells Reveal Functional Genetic Variation at Blood Lipid-Associated Loci. Pashos, Evanthia E; Park, YoSon; Wang, Xiao; Raghavan, Avanthi; Yang, Wenli; Abbey, Deepti; Peters, Derek T; Arbelaez, Juan; Hernandez, Mayda; Kuperwasser, Nicolas; Li, Wenjun; Lian, Zhaorui; Liu, Ying; Lv, Wenjian; Lytle-Gabbin, Stacey L; Marchadier, Dawn H; Rogov, Peter; Shi, Jianting; Slovik, Katherine J; Stylianou, Ioannis M; Wang, Li; Yan, Ruilan; Zhang, Xiaolan; Kathiresan, Sekar; Duncan, Stephen A; Mikkelsen, Tarjei S; Morrisey, Edward E; Rader, Daniel J; Brown, Christopher D; Musunuru, Kiran Cell stem cell. 28388432 2017 Apr 06;
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A Low-Frequency Inactivating AKT2 Variant Enriched in the Finnish Population Is Associated With Fasting Insulin Levels and Type 2 Diabetes Risk. Manning, Alisa (see original citation for additional authors) Diabetes. 28341696 2017 Jul;
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Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion. Pulido-Quetglas, Carlos; Aparicio-Prat, Estel; Arnan, Carme; Polidori, Taisia; Hermoso, Toni; Palumbo, Emilio; Ponomarenko, Julia; Guigo, Roderic; Johnson, Rory PLoS computational biology. 28253259 2017 03;
Whole-transcriptome sequencing in blood provides a diagnosis of spinal muscular atrophy with progressive myoclonic epilepsy. Kernohan, Kristin D; Frésard, Laure; Zappala, Zachary; Hartley, Taila; Smith, Kevin S; Wagner, Justin; Xu, Hongbin; McBride, Arran; Bourque, Pierre R; Consortium, Care Rare Canada; Bennett, Steffany A L; Dyment, David A; Boycott, Kym M; Montgomery, Stephen B; Warman Chardon, Jodi Human mutation. 28251733 2017 06;
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Targeted bisulfite sequencing of the dynamic DNA methylome. Ziller, Michael J; Stamenova, Elena K; Gu, Hongcang; Gnirke, Andreas; Meissner, Alexander Epigenetics & chromatin. 27980681 2016;
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Genomic Characterization of Metformin Hepatic Response. Luizon, Marcelo R; Eckalbar, Walter L; Wang, Yao; Jones, Stacy L; Smith, Robin P; Laurance, Megan; Lin, Lawrence; Gallins, Paul J; Etheridge, Amy S; Wright, Fred; Zhou, Yihui; Molony, Cliona; Innocenti, Federico; Yee, Sook Wah; Giacomini, Kathleen M; Ahit PLoS genetics. 27902686 2016 Nov;
Alpha-2 macroglobulin in Alzheimer's disease: a marker of neuronal injury through the RCAN1 pathway. Varma, V R; Varma, S; An, Y; Hohman, T J; Seddighi, S; Casanova, R; Beri, A; Dammer, E B; Seyfried, N T; Pletnikova, O; Moghekar, A; Wilson, M R; Lah, J J; O'Brien, R J; Levey, A I; Troncoso, J C; Albert, M S; Thambisetty, M Molecular psychiatry. 27872486 2017 Jan;
Integrating GWAS and Co-expression Network Data Identifies Bone Mineral Density Genes SPTBN1 and MARK3 and an Osteoblast Functional Module. Calabrese, Gina M; Mesner, Larry D; Stains, Joseph P; Tommasini, Steven M; Horowitz, Mark C; Rosen, Clifford J; Farber, Charles R Cell systems. 27866947 2017 Jan 25;
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Sex-Specific and Time-Varying Associations Between Cigarette Smoking and Telomere Length Among Older Adults. Zhang, Chenan; Lauderdale, Diane S; Pierce, Brandon L American journal of epidemiology. 27856448 2016 Dec 15;
Survey of the Heritability and Sparse Architecture of Gene Expression Traits across Human Tissues. Wheeler, Heather E; Shah, Kaanan P; Brenner, Jonathon; Garcia, Tzintzuni; Aquino-Michaels, Keston; GTEx Consortium; Cox, Nancy J; Nicolae, Dan L; Im, Hae Kyung PLoS genetics. 27835642 2016 Nov;
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Efficient and Accurate Multiple-Phenotype Regression Method for High Dimensional Data Considering Population Structure. Joo, Jong Wha J; Kang, Eun Yong; Org, Elin; Furlotte, Nick; Parks, Brian; Hormozdiari, Farhad; Lusis, Aldons J; Eskin, Eleazar Genetics. 27770036 2016 Dec;
Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data. Kang, Eun Yong; Martin, Lisa; Mangul, Serghei; Isvilanonda, Warin; Zou, Jennifer; Ben-David, Eyal; Han, Buhm; Lusis, Aldons J; Shifman, Sagiv; Eskin, Eleazar Genetics. 27765809 2016 Oct 07;
Chromosome conformation elucidates regulatory relationships in developing human brain. Won, Hyejung; de la Torre-Ubieta, Luis; Stein, Jason L; Parikshak, Neelroop N; Huang, Jerry; Opland, Carli K; Gandal, Michael J; Sutton, Gavin J; Hormozdiari, Farhad; Lu, Daning; Lee, Changhoon; Eskin, Eleazar; Voineagu, Irina; Ernst, Jason; Geschwind, Da Nature. 27760116 2016 Oct 19;
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Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions. Ernst, Jason; Melnikov, Alexandre; Zhang, Xiaolan; Wang, Li; Rogov, Peter; Mikkelsen, Tarjei S; Kellis, Manolis Nature biotechnology. 27701403 2016 Nov;
IL1RL1 asthma risk variants regulate airway type 2 inflammation. Gordon, Erin D; Palandra, Joe; Wesolowska-Andersen, Agata; Ringel, Lando; Rios, Cydney L; Lachowicz-Scroggins, Marrah E; Sharp, Louis Z; Everman, Jamie L; MacLeod, Hannah J; Lee, Jae W; Mason, Robert J; Matthay, Michael A; Sheldon, Richard T; Peters, Mich JCI insight. 27699235 2016 Sep 08;
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Rare variant phasing and haplotypic expression from RNA sequencing with phASER. Castel, Stephane E; Mohammadi, Pejman; Chung, Wendy K; Shen, Yufeng; Lappalainen, Tuuli Nature communications. 27605262 2016 Sep 08;
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Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder. Hou, Liping; Bergen, Sarah E; Akula, Nirmala; Song, Jie; Hultman, Christina M; Landén, Mikael; Adli, Mazda; Alda, Martin; Ardau, Raffaella; Arias, Bárbara; Aubry, Jean-Michel; Backlund, Lena; Badner, Judith A; Barrett, Thomas B; Bauer, Michael; Baune, Ber Human molecular genetics. 27329760 2016 Aug 01;
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Defining the Phenotype and Assessing Severity in Phosphoglucomutase-1 Deficiency. Wong, Sunnie Yan-Wai; Beamer, Lesa J; Gadomski, Therese; Honzik, Tomas; Mohamed, Miski; Wortmann, Saskia B; Brocke Holmefjord, Katja S; Mork, Marit; Bowling, Francis; Sykut-Cegielska, Jolanta; Koch, Dieter; Ackermann, Amanda; Stanley, Charles A; Rymen, Da The Journal of pediatrics. 27206562 2016 Aug;
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A human-specific AS3MT isoform and BORCS7 are molecular risk factors in the 10q24.32 schizophrenia-associated locus. Li, Ming; Jaffe, Andrew E; Straub, Richard E; Tao, Ran; Shin, Joo Heon; Wang, Yanhong; Chen, Qiang; Li, Chao; Jia, Yankai; Ohi, Kazutaka; Maher, Brady J; Brandon, Nicholas J; Cross, Alan; Chenoweth, Joshua G; Hoeppner, Daniel J; Wei, Huijun; Hyde, Thomas M; McKay, Ronald; Kleinman, Joel E; Weinberger, Daniel R Nature medicine. 27158905 2016 06;
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Novel genetic predictors of venous thromboembolism risk in African Americans. Hernandez, Wenndy; Gamazon, Eric R; Smithberger, Erin; O'Brien, Travis J; Harralson, Arthur F; Tuck, Matthew; Barbour, April; Kittles, Rick A; Cavallari, Larisa H; Perera, Minoli A Blood. 26888256 2016 Apr 14;
A variant at 9p21.3 functionally implicates CDKN2B in paediatric B-cell precursor acute lymphoblastic leukaemia aetiology. Hungate, Eric A; Vora, Sapana R; Gamazon, Eric R; Moriyama, Takaya; Best, Timothy; Hulur, Imge; Lee, Younghee; Evans, Tiffany-Jane; Ellinghaus, Eva; Stanulla, Martin; Rudant, Jéremie; Orsi, Laurent; Clavel, Jacqueline; Milne, Elizabeth; Scott, Rodney J; Pui, Ching-Hon; Cox, Nancy J; Loh, Mignon L; Yang, Jun J; Skol, Andrew D; Onel, Kenan Nature communications. 26868379 2016;
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Corrigendum: Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases. Yang, Jialiang; Huang, Tao; Petralia, Francesca; Long, Quan; Zhang, Bin; Argmann, Carmen; Zhao, Yong; Mobbs, Charles V; Schadt, Eric E; Zhu, Jun; Tu, Zhidong; GTEx Consortium Scientific reports. 26795431 2016 Jan 21;
An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants. Davis, Joe R; Fresard, Laure; Knowles, David A; Pala, Mauro; Bustamante, Carlos D; Battle, Alexis; Montgomery, Stephen B American journal of human genetics. 26749306 2016 Jan 7;
Insertion of an SVA-E retrotransposon into the CASP8 gene is associated with protection against prostate cancer. Stacey, Simon N; Kehr, Birte; Gudmundsson, Julius; Zink, Florian; Jonasdottir, Aslaug; Gudjonsson, Sigurjon A; Sigurdsson, Asgeir; Halldorsson, Bjarni V; Agnarsson, Bjarni A; Benediktsdottir, Kristrun R; Aben, Katja K H; Vermeulen, Sita H; Cremers, Ruben G; Panadero, Angeles; Helfand, Brian T; Cooper, Phillip R; Donovan, Jenny L; Hamdy, Freddie C; Jinga, Viorel; Okamoto, Ichiro; Jonasson, Jon G; Tryggvadottir, Laufey; Johannsdottir, Hrefna; Kristinsdottir, Anna M; Masson, Gisli; Magnusson, Olafur T; Iordache, Paul D; Helgason, Agnar; Helgason, Hannes; Sulem, Patrick; Gudbjartsson, Daniel F; Kong, Augustine; Jonsson, Eirikur; Barkardottir, Rosa B; Einarsson, Gudmundur V; Rafnar, Thorunn; Thorsteinsdottir, Unnur; Mates, Ioan N; Neal, David E; Catalona, William J; Mayordomo, José I; Kiemeney, Lambertus A; Thorleifsson, Gudmar; Stefansson, Kari Human molecular genetics. 26740556 2016 Mar 1;
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IsoDOT Detects Differential RNA-isoform Expression/Usage with respect to a Categorical or Continuous Covariate with High Sensitivity and Specificity. Sun, Wei; Liu, Yufeng; Crowley, James J; Chen, Ting-Hued; Zhou, Hua; Chu, Haitao; Huang, Shunping; Kuan, Pei-Fen; Li, Yuan; Miller, Darla R; Shaw, Ginger D; Wu, Yichao; Zhabotynsky, Vasyl; McMillan, Leonard; Zou, Fei; Sullivan, Patrick F; de Villena, Fernando Pardo-Manuel Journal of the American Statistical Association. 26617424 2015;
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A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project. Carithers, Latarsha J; Ardlie, Kristin; Barcus, Mary; Branton, Philip A; Britton, Angela; Buia, Stephen A; Compton, Carolyn C; DeLuca, David S; Peter-Demchok, Joanne; Gelfand, Ellen T; Guan, Ping; Korzeniewski, Greg E; Lockhart, Nicole C; Rabiner, Chana A Biopreservation and biobanking 26484571 2015 Oct
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A robust blood gene expression-based prognostic model for castration-resistant prostate cancer. Wang, Li; Gong, Yixuan; Chippada-Venkata, Uma; Heck, Matthias Michael; Retz, Margitta; Nawroth, Roman; Galsky, Matthew; Tsao, Che-Kai; Schadt, Eric; de Bono, Johann; Olmos, David; Zhu, Jun; Oh, William K BMC medicine. 26297150 2015;
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Accurate and fast multiple-testing correction in eQTL studies. Sul, Jae Hoon; Raj, Towfique; de Jong, Simone; de Bakker, Paul I W; Raychaudhuri, Soumya; Ophoff, Roel A; Stranger, Barbara E; Eskin, Eleazar; Han, Buhm American journal of human genetics. 26027500 2015 Jun 4;
Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides. Nikolskiy, Igor; Conrad, Donald F; Chun, Sung; Fay, Justin C; Cheverud, James M; Lawson, Heather A BMC genomics. 26016481 2015 May 28;
Sharing and Specificity of Co-expression Networks across 35 Human Tissues. Pierson, Emma; GTEx Consortium; Koller, Daphne; Battle, Alexis; Mostafavi, Sara; Ardlie, Kristin G; Getz, Gad; Wright, Fred A; Kellis, Manolis; Volpi, Simona; Dermitzakis, Emmanouil T PLoS computational biology. 25970446 2015 May;
Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome. Rivas, Manuel A; Pirinen, Matti; Conrad, Donald F; Lek, Monkol; Tsang, Emily K; Karczewski, Konrad J; Maller, Julian B; Kukurba, Kimberly R; DeLuca, David S; Fromer, Menachem; Ferreira, Pedro G; Smith, Kevin S; Zhang, Rui; Zhao, Fengmei; Banks, Eric; Poplin, Ryan; Ruderfer, Douglas M; Purcell, Shaun M; Tukiainen, Taru; Minikel, Eric V; Stenson, Peter D; Cooper, David N; Huang, Katharine H; Sullivan, Timothy J; Nedzel, Jared; GTEx Consortium; Geuvadis Consortium; Bustamante, Carlos D; Li, Jin Billy; Daly, Mark J; Guigo, Roderic; Donnelly, Peter; Ardlie, Kristin; Sammeth, Michael; Dermitzakis, Emmanouil T; McCarthy, Mark I; Montgomery, Stephen B; Lappalainen, Tuuli; MacArthur, Daniel G Science (New York, N.Y.). 25954003 2015 May 8;
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Phosphorylation of Spo0A by the histidine kinase KinD requires the lipoprotein med in Bacillus subtilis. Banse, Allison V; Hobbs, Errett C; Losick, Richard Journal of bacteriology 21622736 2011 Aug
Copy number polymorphisms and anticancer pharmacogenomics. Gamazon, Eric R; Huang, R Stephanie; Dolan, M Eileen; Cox, Nancy J Genome biology 21609475 2011
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A study of CNVs as trait-associated polymorphisms and as expression quantitative trait loci. Gamazon, Eric R; Nicolae, Dan L; Cox, Nancy J PLoS genetics 21304891 2011
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