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The 2nd Epigenome Informatics Workshop

September 9th11th, 2010 in Houston, Texas

 

Thursday, Sep 9th 2010
8:30 am Registration & Continental Breakfast in the Cafe
9:00 am Opening. Aleksandar Milosavljevic
9:05 am Participant's Introduction
9:35 am Module 1 - Intro to Workshop and EDACC. Aleksandar Milosavljevic
10:00 am Module 2 - Methods for methylation mapping. Alan Harris
10:30 am 15min break
10:45 am Module 3 - Metadata Validation and Data Submission. Alan Harris
12 noon Lunch in the Cafe
1:00 pm Module 4 - Analysis pipelines. Cristian Coarfa
2:30 pm Kim Andrews introduces BluBioU (optional)
2:45 pm 15min break
3:00 pm Module 5 - Quality Control. Cristian Coarfa
4:30 pm Adjourn
6:00 pm Dinner at Cielo’s Mexican Bistro - attendance optional Meet in the lobby of the Marriott to take the train to Downtown Houston Reservation is for 6.30pm / see menu at back of this packet 300 Main Street – Preston Rail Station

 

 Friday, Sep 10th 2010

 

8.30 am Continental Breakfast in Cafe
9:00 am Module 6 - Genboree and Epigenome Comparison. Aleksandar Milosavljevic
10:30 am 15min break
10:45 am Module 7 - Epigenome Comparison. Aleksandar Milosavljevic
12 noon Lunch in the Cafe
1:00 pm Module 8 - Using Genboree REST APIs . Andrew Jackson
2:00 pm Module 9 - Case study: exploring collaboration between EDACC and a disease project. Leo Schalkwyk and Cristian Coarfa
3:00 pm 15min break
3:15 pm Participant Presentations - "Methods and tools for comparative and integrative analysis of epigenomic data." Mukaila Akinbami
3:45pm Participant Presentations - "Methods and tools for comparative and integrative analysis of epigenomic data." Qiang Jing
4:15 pm Discussion
5:00 pm Adjourn

 

Saturday, Sep 11th 2010

 

8.30 am Continental Breakfast in Cafe
9:00 am Participant Presentations - "Distance based methylation enrichment in cancer as an alternative approach for unseeded de novo motif discovery." Marc Jung
9:30 am Participant Presentations - "Combining DNA methylation data with gene expression data." Lauren Mills
10:00 am Feedback on the workshop by workshop participants
10:45 am Discussion: Future interaction between EDACC and Epigenomics Roadmap Disease projects
11:15 am Conclusions and Closing Remarks. Aleksandar Milosavljevic
11:30 am Adjourn

 

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