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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Authors Journal PubMedID Publication Date
The epithelial polarity genes frazzled and GUK-holder adjust morphogen gradients to coordinate changes in cell position with cell fate specification. Xue, Yongqiang; Krishnan, Aravindan; Chahda, Juan Sebastian; Schweickart, Robert Allen; Sousa-Neves, Rui; Mizutani, Claudia Mieko PLoS biology 36913435 2023 Mar
Career self-efficacy disparities in underrepresented biomedical scientist trainees. Chatterjee, Deepshikha; Jacob, Gabrielle A; Varvayanis, Susi Sturzenegger; Wefes, Inge; Chalkley, Roger; Nogueira, Ana T; Fuhrmann, Cynthia N; Varadarajan, Janani; Hubbard, Nisaan M; Gaines, Christiann H; Layton, Rebekah L; Chaudhary, Sunita PloS one 36857379 2023
Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease. D'Antonio, Matteo; Nguyen, Jennifer P; Arthur, Timothy D; iPSCORE Consortium; Matsui, Hiroko; D'Antonio-Chronowska, Agnieszka; Frazer, Kelly A Nature communications 36854752 2023 Feb 28
Condensin DC loads and spreads from recruitment sites to create loop-anchored TADs in C. elegans. Kim, Jun; Jimenez, David S; Ragipani, Bhavana; Zhang, Bo; Street, Lena A; Kramer, Maxwell; Albritton, Sarah E; Winterkorn, Lara H; Morao, Ana K; Ercan, Sevinc eLife 36331876 2022 11 04
CD169-mediated restrictive SARS-CoV-2 infection of macrophages induces pro-inflammatory responses. Jalloh, Sallieu; Olejnik, Judith; Berrigan, Jacob; Nisa, Annuurun; Suder, Ellen L; Akiyama, Hisashi; Lei, Maohua; Ramaswamy, Sita; Tyagi, Sanjay; Bushkin, Yuri; Mühlberger, Elke; Gummuluru, Suryaram PLoS pathogens 36279285 2022 Oct
Development of an Interferon-Gamma Release Assay (IGRA) to Aid Diagnosis of Histoplasmosis. Datta, Kausik; LaRue, Richard; Permpalung, Nitipong; Das, Sukanya; Zhang, Sean; Mehta Steinke, Seema; Bushkin, Yuri; Nosanchuk, Joshua D; Marr, Kieren A Journal of clinical microbiology 36190260 2022 Oct 19
Shifting machine learning for healthcare from development to deployment and from models to data. Zhang, Angela; Xing, Lei; Zou, James; Wu, Joseph C Nature biomedical engineering 35788685 2022 Jul 04
Astrocyte ethanol exposure reveals persistent and defined calcium response subtypes and associated gene signatures. Kim, Hyun-Bum; Lu, Youtao; Oh, Seonkyung C; Morris, Jacqueline; Miyashiro, Kevin; Kim, Junhyong; Eberwine, James; Sul, Jai-Yoon The Journal of biological chemistry 35716779 2022 Jun 16
Deep learning identification of stiffness markers in breast cancer. Sneider, Alexandra; Kiemen, Ashley; Kim, Joo Ho; Wu, Pei-Hsun; Habibi, Mehran; White, Marissa; Phillip, Jude M; Gu, Luo; Wirtz, Denis Biomaterials 35537336 2022 06
The nested embryonic dorsal domains of BMP-target genes are not scaled to size during the evolution of Drosophila species. Chahda, Juan Sebastian; Ambrosi, Priscilla; Mizutani, Claudia M Journal of experimental zoology. Part B, Molecular and developmental evolution 35451554 2022 Apr 22
Altered adult neurogenesis and gliogenesis in patients with mesial temporal lobe epilepsy. Ammothumkandy, Aswathy; Ravina, Kristine; Wolseley, Victoria; Tartt, Alexandria N; Yu, Pen-Ning; Corona, Luis; Zhang, Naibo; Nune, George; Kalayjian, Laura; Mann, J John; Rosoklija, Gorazd B; Arango, Victoria; Dwork, Andrew J; Lee, Brian; Smith, J A D; Song, Dong; Berger, Theodore W; Heck, Christianne; Chow, Robert H; Boldrini, Maura; Liu, Charles Y; Russin, Jonathan J; Bonaguidi, Michael A Nature neuroscience 35383330 2022 Apr
CD169-mediated restrictive SARS-CoV-2 infection of macrophages induces pro-inflammatory responses. Jalloh, Sallieu; Olejnik, Judith; Berrigan, Jacob; Nisa, Annuurun; Suder, Ellen L; Akiyama, Hisashi; Lei, Maohua; Tyagi, Sanjay; Bushkin, Yuri; Mühlberger, Elke; Gummuluru, Suryaram bioRxiv : the preprint server for biology 35378756 2022 Mar 30
In heart failure reactivation of RNA-binding proteins is associated with the expression of 1,523 fetal-specific isoforms. D'Antonio, Matteo; Nguyen, Jennifer P; Arthur, Timothy D; Matsui, Hiroko; Donovan, Margaret K R; D'Antonio-Chronowska, Agnieszka; Frazer, Kelly A PLoS computational biology 35226669 2022 Feb
Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains. Jiang, Shengdian; Wang, Yimin; Liu, Lijuan; Ding, Liya; Ruan, Zongcai; Dong, Hong-Wei; Ascoli, Giorgio A; Hawrylycz, Michael; Zeng, Hongkui; Peng, Hanchuan Neuroinformatics 35182359 2022 Feb 19
DynaMorph: self-supervised learning of morphodynamic states of live cells. Wu, Zhenqin; Chhun, Bryant B; Popova, Galina; Guo, Syuan-Ming; Kim, Chang N; Yeh, Li-Hao; Nowakowski, Tomasz; Zou, James; Mehta, Shalin B Molecular biology of the cell 35138913 2022 05 15
Dedifferentiation alters chondrocyte nuclear mechanics during in vitro culture and expansion. Ghosh, Soham; Scott, Adrienne K; Seelbinder, Benjamin; Barthold, Jeanne E; Martin, Brittany M St; Kaonis, Samantha; Schneider, Stephanie E; Henderson, Jonathan T; Neu, Corey P Biophysical journal 34800469 2022 Jan 04
SuperSelective primer pairs for sensitive detection of rare somatic mutations. Kramer, Fred Russell; Vargas, Diana Yaneth Scientific reports 34789731 2021 11 17
Scalable dual-omics profiling with single-nucleus chromatin accessibility and mRNA expression sequencing 2 (SNARE-seq2). Plongthongkum, Nongluk; Diep, Dinh; Chen, Song; Lake, Blue B; Zhang, Kun Nature protocols 34650278 2021 11
Reduction in gene expression noise by targeted increase in accessibility at gene loci. Fraser, LaTasha C R; Dikdan, Ryan J; Dey, Supravat; Singh, Abhyudai; Tyagi, Sanjay Proceedings of the National Academy of Sciences of the United States of America 34625470 2021 Oct 19
A multimodal cell census and atlas of the mammalian primary motor cortex. BRAIN Initiative Cell Census Network (BICCN) Nature 34616075 2021 10
Morphological diversity of single neurons in molecularly defined cell types. Peng, Hanchuan; Xie, Peng; Liu, Lijuan; Kuang, Xiuli; Wang, Yimin; Qu, Lei; Gong, Hui; Jiang, Shengdian; Li, Anan; Ruan, Zongcai; Ding, Liya; Yao, Zizhen; Chen, Chao; Chen, Mengya; Daigle, Tanya L; Dalley, Rachel; Ding, Zhangcan; Duan, Yanjun; Feiner, Aaron; He, Ping; Hill, Chris; Hirokawa, Karla E; Hong, Guodong; Huang, Lei; Kebede, Sara; Kuo, Hsien-Chi; Larsen, Rachael; Lesnar, Phil; Li, Longfei; Li, Qi; Li, Xiangning; Li, Yaoyao; Li, Yuanyuan; Liu, An; Lu, Donghuan; Mok, Stephanie; Ng, Lydia; Nguyen, Thuc Nghi; Ouyang, Qiang; Pan, Jintao; Shen, Elise; Song, Yuanyuan; Sunkin, Susan M; Tasic, Bosiljka; Veldman, Matthew B; Wakeman, Wayne; Wan, Wan; Wang, Peng; Wang, Quanxin; Wang, Tao; Wang, Yaping; Xiong, Feng; Xiong, Wei; Xu, Wenjie; Ye, Min; Yin, Lulu; Yu, Yang; Yuan, Jia; Yuan, Jing; Yun, Zhixi; Zeng, Shaoqun; Zhang, Shichen; Zhao, Sujun; Zhao, Zijun; Zhou, Zhi; Huang, Z Josh; Esposito, Luke; Hawrylycz, Michael J; Sorensen, Staci A; Yang, X William; Zheng, Yefeng; Gu, Zhongze; Xie, Wei; Koch, Christof; Luo, Qingming; Harris, Julie A; Wang, Yun; Zeng, Hongkui Nature 34616072 2021 10
Cellular anatomy of the mouse primary motor cortex. Muñoz-Castañeda, Rodrigo; Zingg, Brian; Matho, Katherine S; Chen, Xiaoyin; Wang, Quanxin; Foster, Nicholas N; Li, Anan; Narasimhan, Arun; Hirokawa, Karla E; Huo, Bingxing; Bannerjee, Samik; Korobkova, Laura; Park, Chris Sin; Park, Young-Gyun; Bienkowski, Michael S; Chon, Uree; Wheeler, Diek W; Li, Xiangning; Wang, Yun; Naeemi, Maitham; Xie, Peng; Liu, Lijuan; Kelly, Kathleen; An, Xu; Attili, Sarojini M; Bowman, Ian; Bludova, Anastasiia; Cetin, Ali; Ding, Liya; Drewes, Rhonda; D'Orazi, Florence; Elowsky, Corey; Fischer, Stephan; Galbavy, William; Gao, Lei; Gillis, Jesse; Groblewski, Peter A; Gou, Lin; Hahn, Joel D; Hatfield, Joshua T; Hintiryan, Houri; Huang, Junxiang Jason; Kondo, Hideki; Kuang, Xiuli; Lesnar, Philip; Li, Xu; Li, Yaoyao; Lin, Mengkuan; Lo, Darrick; Mizrachi, Judith; Mok, Stephanie; Nicovich, Philip R; Palaniswamy, Ramesh; Palmer, Jason; Qi, Xiaoli; Shen, Elise; Sun, Yu-Chi; Tao, Huizhong W; Wakemen, Wayne; Wang, Yimin; Yao, Shenqin; Yuan, Jing; Zhan, Huiqing; Zhu, Muye; Ng, Lydia; Zhang, Li I; Lim, Byung Kook; Hawrylycz, Michael; Gong, Hui; Gee, James C; Kim, Yongsoo; Chung, Kwanghun; Yang, X William; Peng, Hanchuan; Luo, Qingming; Mitra, Partha P; Zador, Anthony M; Zeng, Hongkui; Ascoli, Giorgio A; Josh Huang, Z; Osten, Pavel; Harris, Julie A; Dong, Hong-Wei Nature 34616071 2021 10
Human neocortical expansion involves glutamatergic neuron diversification. Berg, Jim; Sorensen, Staci A; Ting, Jonathan T; Miller, Jeremy A; Chartrand, Thomas; Buchin, Anatoly; Bakken, Trygve E; Budzillo, Agata; Dee, Nick; Ding, Song-Lin; Gouwens, Nathan W; Hodge, Rebecca D; Kalmbach, Brian; Lee, Changkyu; Lee, Brian R; Alfiler, Lauren; Baker, Katherine; Barkan, Eliza; Beller, Allison; Berry, Kyla; Bertagnolli, Darren; Bickley, Kris; Bomben, Jasmine; Braun, Thomas; Brouner, Krissy; Casper, Tamara; Chong, Peter; Crichton, Kirsten; Dalley, Rachel; de Frates, Rebecca; Desta, Tsega; Lee, Samuel Dingman; D'Orazi, Florence; Dotson, Nadezhda; Egdorf, Tom; Enstrom, Rachel; Farrell, Colin; Feng, David; Fong, Olivia; Furdan, Szabina; Galakhova, Anna A; Gamlin, Clare; Gary, Amanda; Glandon, Alexandra; Goldy, Jeff; Gorham, Melissa; Goriounova, Natalia A; Gratiy, Sergey; Graybuck, Lucas; Gu, Hong; Hadley, Kristen; Hansen, Nathan; Heistek, Tim S; Henry, Alex M; Heyer, Djai B; Hill, DiJon; Hill, Chris; Hupp, Madie; Jarsky, Tim; Kebede, Sara; Keene, Lisa; Kim, Lisa; Kim, Mean-Hwan; Kroll, Matthew; Latimer, Caitlin; Levi, Boaz P; Link, Katherine E; Mallory, Matthew; Mann, Rusty; Marshall, Desiree; Maxwell, Michelle; McGraw, Medea; McMillen, Delissa; Melief, Erica; Mertens, Eline J; Mezei, Leona; Mihut, Norbert; Mok, Stephanie; Molnar, Gabor; Mukora, Alice; Ng, Lindsay; Ngo, Kiet; Nicovich, Philip R; Nyhus, Julie; Olah, Gaspar; Oldre, Aaron; Omstead, Victoria; Ozsvar, Attila; Park, Daniel; Peng, Hanchuan; Pham, Trangthanh; Pom, Christina A; Potekhina, Lydia; Rajanbabu, Ramkumar; Ransford, Shea; Reid, David; Rimorin, Christine; Ruiz, Augustin; Sandman, David; Sulc, Josef; Sunkin, Susan M; Szafer, Aaron; Szemenyei, Viktor; Thomsen, Elliot R; Tieu, Michael; Torkelson, Amy; Trinh, Jessica; Tung, Herman; Wakeman, Wayne; Waleboer, Femke; Ward, Katelyn; Wilbers, René; Williams, Grace; Yao, Zizhen; Yoon, Jae-Geun; Anastassiou, Costas; Arkhipov, Anton; Barzo, Pal; Bernard, Amy; Cobbs, Charles; de Witt Hamer, Philip C; Ellenbogen, Richard G; Esposito, Luke; Ferreira, Manuel; Gwinn, Ryder P; Hawrylycz, Michael J; Hof, Patrick R; Idema, Sander; Jones, Allan R; Keene, C Dirk; Ko, Andrew L; Murphy, Gabe J; Ng, Lydia; Ojemann, Jeffrey G; Patel, Anoop P; Phillips, John W; Silbergeld, Daniel L; Smith, Kimberly; Tasic, Bosiljka; Yuste, Rafael; Segev, Idan; de Kock, Christiaan P J; Mansvelder, Huibert D; Tamas, Gabor; Zeng, Hongkui; Koch, Christof; Lein, Ed S Nature 34616067 2021 10
Lack of Transparency and Potential Bias in Artificial Intelligence Data Sets and Algorithms: A Scoping Review. Daneshjou, Roxana; Smith, Mary P; Sun, Mary D; Rotemberg, Veronica; Zou, James JAMA dermatology 34550305 2021 11 01
Machine Learning-Based Pipette Positional Correction for Automatic Patch Clamp In Vitro. Gonzalez, Mercedes M; Lewallen, Colby F; Yip, Mighten C; Forest, Craig R eNeuro 34312222 2021 Jul-Aug
A cross-institutional analysis of the effects of broadening trainee professional development on research productivity. Brandt, Patrick D; Sturzenegger Varvayanis, Susi; Baas, Tracey; Bolgioni, Amanda F; Alder, Janet; Petrie, Kimberly A; Dominguez, Isabel; Brown, Abigail M; Stayart, C Abigail; Singh, Harinder; Van Wart, Audra; Chow, Christine S; Mathur, Ambika; Schreiber, Barbara M; Fruman, David A; Bowden, Brent; Wiesen, Christopher A; Golightly, Yvonne M; Holmquist, Chris E; Arneman, Daniel; Hall, Joshua D; Hyman, Linda E; Gould, Kathleen L; Chalkley, Roger; Brennwald, Patrick J; Layton, Rebekah L PLoS biology 34264929 2021 Jul
Disparity in the quality of COVID-19 data reporting across India. Vasudevan, Varun; Gnanasekaran, Abeynaya; Sankar, Varsha; Vasudevan, Siddarth A; Zou, James BMC public health 34167499 2021 06 24
Unveiling Complexity and Multipotentiality of Early Heart Fields. Zhang, Qingquan; Carlin, Daniel; Zhu, Fugui; Cattaneo, Paola; Ideker, Trey; Evans, Sylvia M; Bloomekatz, Joshua; Chi, Neil C Circulation research 34162224 2021 Aug 06
Comprehensive analysis of 2.4 million patent-to-research citations maps the biomedical innovation and translation landscape. Manjunath, Anoop; Li, Hongyu; Song, Shuchen; Zhang, Zhixing; Liu, Shu; Kahrobai, Nathan; Gowda, Arya; Seffens, Angelina; Zou, James; Kumar, Ishan Nature biotechnology 34113042 2021 06
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation. Yao, Zizhen; van Velthoven, Cindy T J; Nguyen, Thuc Nghi; Goldy, Jeff; Sedeno-Cortes, Adriana E; Baftizadeh, Fahimeh; Bertagnolli, Darren; Casper, Tamara; Chiang, Megan; Crichton, Kirsten; Ding, Song-Lin; Fong, Olivia; Garren, Emma; Glandon, Alexandra; Gouwens, Nathan W; Gray, James; Graybuck, Lucas T; Hawrylycz, Michael J; Hirschstein, Daniel; Kroll, Matthew; Lathia, Kanan; Lee, Changkyu; Levi, Boaz; McMillen, Delissa; Mok, Stephanie; Pham, Thanh; Ren, Qingzhong; Rimorin, Christine; Shapovalova, Nadiya; Sulc, Josef; Sunkin, Susan M; Tieu, Michael; Torkelson, Amy; Tung, Herman; Ward, Katelyn; Dee, Nick; Smith, Kimberly A; Tasic, Bosiljka; Zeng, Hongkui Cell 34004146 2021 Jun 10
Astrocytes promote ethanol-induced enhancement of intracellular Ca2+ signals through intercellular communication with neurons. Kim, Hyun-Bum; Morris, Jacqueline; Miyashiro, Kevin; Lehto, Tõnis; Langel, Ülo; Eberwine, James; Sul, Jai-Yoon iScience 33997707 2021 May 21
Rapid Cortical Adaptation and the Role of Thalamic Synchrony during Wakefulness. Wright, Nathaniel C; Borden, Peter Y; Liew, Yi Juin; Bolus, Michael F; Stoy, William M; Forest, Craig R; Stanley, Garrett B The Journal of neuroscience : the official journal of the Society for Neuroscience 33986072 2021 06 23
Ensuring that biomedical AI benefits diverse populations. Zou, James; Schiebinger, Londa EBioMedicine 33962897 2021 May
Automated Intracellular Pharmacological Electrophysiology for Ligand-Gated Ionotropic Receptor and Pharmacology Screening. Perszyk, Riley E; Yip, Mighten C; McConnell, Ona L; Wang, Eric T; Jenkins, Andrew; Traynelis, Stephen F; Forest, Craig R Molecular pharmacology 33958481 2021 07
Data valuation for medical imaging using Shapley value and application to a large-scale chest X-ray dataset. Tang, Siyi; Ghorbani, Amirata; Yamashita, Rikiya; Rehman, Sameer; Dunnmon, Jared A; Zou, James; Rubin, Daniel L Scientific reports 33863957 2021 04 16
BABEL enables cross-modality translation between multiomic profiles at single-cell resolution. Wu, Kevin E; Yost, Kathryn E; Chang, Howard Y; Zou, James Proceedings of the National Academy of Sciences of the United States of America 33827925 2021 04 13
Altering metabolite distribution at Xenopus cleavage stages affects left-right gene expression asymmetries. Onjiko, Rosemary M; Nemes, Peter; Moody, Sally A Genesis (New York, N.Y. : 2000) 33826226 2021 06
How medical AI devices are evaluated: limitations and recommendations from an analysis of FDA approvals. Wu, Eric; Wu, Kevin; Daneshjou, Roxana; Ouyang, David; Ho, Daniel E; Zou, James Nature medicine 33820998 2021 04
Deep learning-based real-time detection of neurons in brain slices for in vitro physiology. Yip, Mighten C; Gonzalez, Mercedes M; Valenta, Christopher R; Rowan, Matthew J M; Forest, Craig R Scientific reports 33727679 2021 Mar 16
Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics. Bonder, Marc Jan; Smail, Craig; Gloudemans, Michael J; Frésard, Laure; Jakubosky, David; D'Antonio, Matteo; Li, Xin; Ferraro, Nicole M; Carcamo-Orive, Ivan; Mirauta, Bogdan; Seaton, Daniel D; Cai, Na; Vakili, Dara; Horta, Danilo; Zhao, Chunli; Zastrow, Diane B; Bonner, Devon E; HipSci Consortium; iPSCORE consortium; Undiagnosed Diseases Network; PhLiPS consortium; Wheeler, Matthew T; Kilpinen, Helena; Knowles, Joshua W; Smith, Erin N; Frazer, Kelly A; Montgomery, Stephen B; Stegle, Oliver Nature genetics 33664507 2021 03
In vitro Differentiation of Human iPSC-derived Cardiovascular Progenitor Cells (iPSC-CVPCs). D'Antonio-Chronowska, Agnieszka; D'Antonio, Matteo; Frazer, Kelly A Bio-protocol 33659414 2020 Sep 20
In vitro Differentiation of Human iPSC-derived Retinal Pigment Epithelium Cells (iPSC-RPE). D'Antonio-Chronowska, Agnieszka; D'Antonio, Matteo; Frazer, Kelly A Bio-protocol 33654959 2019 Dec 20
Single cell epigenetic visualization assay. Kint, Sam; Van Criekinge, Wim; Vandekerckhove, Linos; De Vos, Winnok H; Bomsztyk, Karol; Krause, Diane S; Denisenko, Oleg Nucleic acids research 33511400 2021 May 07
Fractional re-distribution among cell motility states during ageing. Phillip, Jude M; Zamponi, Nahuel; Phillip, Madonna P; Daya, Jena; McGovern, Shaun; Williams, Wadsworth; Tschudi, Katherine; Jayatilaka, Hasini; Wu, Pei-Hsun; Walston, Jeremy; Wirtz, Denis Communications biology 33469145 2021 Jan 19
A robust unsupervised machine-learning method to quantify the morphological heterogeneity of cells and nuclei. Phillip, Jude M; Han, Kyu-Sang; Chen, Wei-Chiang; Wirtz, Denis; Wu, Pei-Hsun Nature protocols 33424024 2021 02
Compensation of physiological motion enables high-yield whole-cell recording in vivo. Stoy, William M; Yang, Bo; Kight, Ali; Wright, Nathaniel C; Borden, Peter Y; Stanley, Garrett B; Forest, Craig R Journal of neuroscience methods 33242530 2021 Jan 15
Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells. Gouwens, Nathan W; Sorensen, Staci A; Baftizadeh, Fahimeh; Budzillo, Agata; Lee, Brian R; Jarsky, Tim; Alfiler, Lauren; Baker, Katherine; Barkan, Eliza; Berry, Kyla; Bertagnolli, Darren; Bickley, Kris; Bomben, Jasmine; Braun, Thomas; Brouner, Krissy; Casper, Tamara; Crichton, Kirsten; Daigle, Tanya L; Dalley, Rachel; de Frates, Rebecca A; Dee, Nick; Desta, Tsega; Lee, Samuel Dingman; Dotson, Nadezhda; Egdorf, Tom; Ellingwood, Lauren; Enstrom, Rachel; Esposito, Luke; Farrell, Colin; Feng, David; Fong, Olivia; Gala, Rohan; Gamlin, Clare; Gary, Amanda; Glandon, Alexandra; Goldy, Jeff; Gorham, Melissa; Graybuck, Lucas; Gu, Hong; Hadley, Kristen; Hawrylycz, Michael J; Henry, Alex M; Hill, DiJon; Hupp, Madie; Kebede, Sara; Kim, Tae Kyung; Kim, Lisa; Kroll, Matthew; Lee, Changkyu; Link, Katherine E; Mallory, Matthew; Mann, Rusty; Maxwell, Michelle; McGraw, Medea; McMillen, Delissa; Mukora, Alice; Ng, Lindsay; Ng, Lydia; Ngo, Kiet; Nicovich, Philip R; Oldre, Aaron; Park, Daniel; Peng, Hanchuan; Penn, Osnat; Pham, Thanh; Pom, Alice; Popovi?, Zoran; Potekhina, Lydia; Rajanbabu, Ramkumar; Ransford, Shea; Reid, David; Rimorin, Christine; Robertson, Miranda; Ronellenfitch, Kara; Ruiz, Augustin; Sandman, David; Smith, Kimberly; Sulc, Josef; Sunkin, Susan M; Szafer, Aaron; Tieu, Michael; Torkelson, Amy; Trinh, Jessica; Tung, Herman; Wakeman, Wayne; Ward, Katelyn; Williams, Grace; Zhou, Zhi; Ting, Jonathan T; Arkhipov, Anton; Sümbül, Uygar; Lein, Ed S; Koch, Christof; Yao, Zizhen; Tasic, Bosiljka; Berg, Jim; Murphy, Gabe J; Zeng, Hongkui Cell. 33186530 2020 Nov 12;
Single-cell transcriptomics identifies multiple pathways underlying antitumor function of TCR- and CD8αβ-engineered human CD4+ T cells. Rath, Jan A; Bajwa, Gagan; Carreres, Benoit; Hoyer, Elisabeth; Gruber, Isabelle; Martínez-Paniagua, Melisa A; Yu, Yi-Ru; Nouraee, Nazila; Sadeghi, Fatemeh; Wu, Mengfen; Wang, Tao; Hebeisen, Michael; Rufer, Nathalie; Varadarajan, Navin; Ho, Ping-Chih; Brenner, Malcolm K; Gfeller, David; Arber, Caroline Science advances 32923584 2020 07
Applying Experiential Learning to Career Development Training for Biomedical Graduate Students and Postdocs: Perspectives on Program Development and Design. Van Wart, Audra; O'Brien, Theresa C; Varvayanis, Susi; Alder, Janet; Greenier, Jennifer; Layton, Rebekah L; Stayart, C Abigail; Wefes, Inge; Brady, Ashley E CBE life sciences education. 32822277 2020 09;
Brainwide Genetic Sparse Cell Labeling to Illuminate the Morphology of Neurons and Glia with Cre-Dependent MORF Mice. Veldman, Matthew B; Park, Chang Sin; Eyermann, Charles M; Zhang, Jason Y; Zuniga-Sanchez, Elizabeth; Hirano, Arlene A; Daigle, Tanya L; Foster, Nicholas N; Zhu, Muye; Langfelder, Peter; Lopez, Ivan A; Brecha, Nicholas C; Zipursky, S Lawrence; Zeng, Hongkui; Dong, Hong-Wei; Yang, X William Neuron 32795398 2020 10 14
RNA-GPS Predicts SARS-CoV-2 RNA Residency to Host Mitochondria and Nucleolus. Wu, Kevin E; Fazal, Furqan M; Parker, Kevin R; Zou, James; Chang, Howard Y Cell systems. 32673562 2020 07 22;
Integrating spatial gene expression and breast tumour morphology via deep learning. He, Bryan; Bergenstråhle, Ludvig; Stenbeck, Linnea; Abid, Abubakar; Andersson, Alma; Borg, Åke; Maaskola, Jonas; Lundeberg, Joakim; Zou, James Nature biomedical engineering. 32572199 2020 08;
Whole-body tracking of single cells via positron emission tomography. Jung, Kyung Oh; Kim, Tae Jin; Yu, Jung Ho; Rhee, Siyeon; Zhao, Wei; Ha, Byunghang; Red-Horse, Kristy; Gambhir, Sanjiv Sam; Pratx, Guillem Nature biomedical engineering. 32541917 2020 Aug;
Institutional Training Opportunities for PhD Students in Laboratory Medicine: An Unmet Career Development Need? Colby, Jennifer M; Wheeler, Ferrin C; Petrie, Kimberly A; Gould, Kathleen L; Schmitz, Jonathan E The journal of applied laboratory medicine. 32445389 2020 03 01;
Genomic integrity of human induced pluripotent stem cells across nine studies in the NHLBI NextGen program. Kanchan, Kanika; Iyer, Kruthika; Yanek, Lisa R; Carcamo-Orive, Ivan; Taub, Margaret A; Malley, Claire; Baldwin, Kristin; Becker, Lewis C; Broeckel, Ulrich; Cheng, Linzhao; Cowan, Chad; D'Antonio, Matteo; Frazer, Kelly A; Quertermous, Thomas; Mostoslavsky, Gustavo; Murphy, George; Rabinovitch, Marlene; Rader, Daniel J; Steinberg, Martin H; Topol, Eric; Yang, Wenli; Knowles, Joshua W; Jaquish, Cashell E; Ruczinski, Ingo; Mathias, Rasika A Stem cell research. 32442913 2020 07;
Tools for the analysis of high-dimensional single-cell RNA sequencing data. Wu, Yan; Zhang, Kun Nature reviews. Nephrology. 32221477 2020 07;
CAR T-cells that target acute B-lineage leukemia irrespective of CD19 expression. Fousek, Kristen; Watanabe, Junji; Joseph, Sujith K; George, Ann; An, Xingyue; Byrd, Tiara T; Morris, Jessica S; Luong, Annie; Martínez-Paniagua, Melisa A; Sanber, Khaled; Navai, Shoba A; Gad, Ahmed Z; Salsman, Vita S; Mathew, Pretty R; Kim, Hye Na; Wagner, Dimitrios L; Brunetti, Lorenzo; Jang, Albert; Baker, Matthew L; Varadarajan, Navin; Hegde, Meenakshi; Kim, Yong-Mi; Heisterkamp, Nora; Abdel-Azim, Hisham; Ahmed, Nabil Leukemia. 32205861 2020 Mar 24;
Capillary-Based and Stokes-Based Trapping of Serial Sections for Scalable 3D-EM Connectomics. Lee, Timothy J; Yip, Mighten C; Kumar, Aditi; Lewallen, Colby F; Bumbarger, Daniel J; Reid, R Clay; Forest, Craig R eNeuro. 32094293 2020 Mar/Apr;
Applying inter-rater reliability to improve consistency in classifying PhD career outcomes. Stayart, C Abigail; Brandt, Patrick D; Brown, Abigail M; Dahl, Tamara; Layton, Rebekah L; Petrie, Kimberly A; Flores-Kim, Emma N; Peña, Christopher G; Fuhrmann, Cynthia N; Monsalve, Gabriela C F1000Research. 32089837 2020;
Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants. Donovan, Margaret K R; D'Antonio-Chronowska, Agnieszka; D'Antonio, Matteo; Frazer, Kelly A Nature communications. 32075962 2020 02 19;
Robust RNA-Seq of aRNA-amplified single cell material collected by patch clamp. Kim, Jae Mun Hugo; Camarena, Adrian; Walker, Christopher; Lin, Ming Yi; Wolseley, Victoria; Souaiaia, Tade; Thornton, Matthew; Grubbs, Brendan; Chow, Robert H; Evgrafov, Oleg V; Knowles, James A Scientific reports. 32029778 2020 Feb 06;
Single-cell morphology encodes metastatic potential. Wu, Pei-Hsun; Gilkes, Daniele M; Phillip, Jude M; Narkar, Akshay; Cheng, Thomas Wen-Tao; Marchand, Jorge; Lee, Meng-Horng; Li, Rong; Wirtz, Denis Science advances. 32010778 2020 01;
Principles and Strategies for Effective Teaching: A Workshop for Pre- and Postdoctoral Trainees in the Biomedical Sciences. Hartley, Laurel M; Ferrara, Michael J; Handelsman, Mitchell M; Rutebemberwa, Alleluiah; Wefes, Inge Journal of microbiology & biology education. 31890073 2019;
Identification of Neuronal Lineages in the Drosophila Peripheral Nervous System with a ''Digital'' Multi-spectral Lineage Tracing System. Veling, Macy W; Li, Ye; Veling, Mike T; Litts, Christopher; Michki, Nigel; Liu, Hao; Ye, Bing; Cai, Dawen Cell reports. 31801091 2019 Dec 03;
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AceTree: a major update and case study in the long term maintenance of open-source scientific software. Katzman, Braden; Tang, Doris; Santella, Anthony; Bao, Zhirong BMC bioinformatics. 29618316 2018 Apr 04;
The successes and future prospects of the linear antisense RNA amplification methodology. Li, Jifen; Eberwine, James Nature protocols. 29599441 2018 05;
Single-Cell Mass Spectrometry Reveals Changes in Lipid and Metabolite Expression in RAW 264.7 Cells upon Lipopolysaccharide Stimulation. Yang, Bo; Patterson, Nathan Heath; Tsui, Tina; Caprioli, Richard M; Norris, Jeremy L Journal of the American Society for Mass Spectrometry. 29536413 2018 Mar 13;
Direct measurement of bipolar cell responses to electrical stimulation in wholemount mouse retina. Walston, Steven T; Chow, Robert H; Weiland, James D Journal of neural engineering. 29513646 2018 08;
A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Piatkevich, Kiryl D; Jung, Erica E; Straub, Christoph; Linghu, Changyang; Park, Demian; Suk, Ho-Jun; Hochbaum, Daniel R; Goodwin, Daniel; Pnevmatikakis, Eftychios; Pak, Nikita; Kawashima, Takashi; Yang, Chao-Tsung; Rhoades, Jeffrey L; Shemesh, Or; Asano, Shoh; Yoon, Young-Gyu; Freifeld, Limor; Saulnier, Jessica L; Riegler, Clemens; Engert, Florian; Hughes, Thom; Drobizhev, Mikhail; Szabo, Balint; Ahrens, Misha B; Flavell, Steven W; Sabatini, Bernardo L; Boyden, Edward S Nature chemical biology. 29483642 2018 Apr;
Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH. Torre, Eduardo; Dueck, Hannah; Shaffer, Sydney; Gospocic, Janko; Gupte, Rohit; Bonasio, Roberto; Kim, Junhyong; Murray, John; Raj, Arjun Cell systems. 29454938 2018 Feb 28;
Molecular Time Sharing through Dynamic Pulsing in Single Cells. Park, Jin; Dies, Marta; Lin, Yihan; Hormoz, Sahand; Smith-Unna, Stephanie E; Quinodoz, Sofia; Hernández-Jiménez, María Jesús; Garcia-Ojalvo, Jordi; Locke, James C W; Elowitz, Michael B Cell systems. 29454936 2018 Feb 28;
Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation. Preissl, Sebastian; Fang, Rongxin; Huang, Hui; Zhao, Yuan; Raviram, Ramya; Gorkin, David U; Zhang, Yanxiao; Sos, Brandon C; Afzal, Veena; Dickel, Diane E; Kuan, Samantha; Visel, Axel; Pennacchio, Len A; Zhang, Kun; Ren, Bing Nature neuroscience. 29434377 2018 Mar;
Mechanical regulation of stem-cell differentiation by the stretch-activated Piezo channel. He, Li; Si, Guangwei; Huang, Jiuhong; Samuel, Aravinthan D T; Perrimon, Norbert Nature. 29414942 2018 03 01;
Label-Free Imaging of Heme Dynamics in Living Organisms by Transient Absorption Microscopy. Chen, Andy Jing; Yuan, Xiaojing; Li, Junjie; Dong, Puting; Hamza, Iqbal; Cheng, Ji-Xin Analytical chemistry. 29401392 2018 03 06;
Acoustofluidic waveguides for localized control of acoustic wavefront in microfluidics. Bian, Yusheng; Guo, Feng; Yang, Shujie; Mao, Zhangming; Bachman, Hunter; Tang, Shi-Yang; Ren, Liqiang; Zhang, Bin; Gong, Jianying; Guo, Xiasheng; Huang, Tony Jun Microfluidics and nanofluidics. 29358901 2017 Aug;
Cell Membrane Tracking in Living Brain Tissue Using Differential Interference Contrast Microscopy. Lee, John; Kolb, Ilya; Forest, Craig R; Rozell, Christopher J IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. 29346099 2018 Apr;
Survey of checkpoints along the pathway to diverse biomedical research faculty. Meyers, Lindsay C; Brown, Abigail M; Moneta-Koehler, Liane; Chalkley, Roger PloS one. 29338019 2018;
Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos. Trivedi, Vikas; Choi, Harry M T; Fraser, Scott E; Pierce, Niles A Development (Cambridge, England). 29311262 2018 01 08;
PIVOT: platform for interactive analysis and visualization of transcriptomics data. Zhu, Qin; Fisher, Stephen A; Dueck, Hannah; Middleton, Sarah; Khaladkar, Mugdha; Kim, Junhyong BMC bioinformatics. 29304726 2018 Jan 05;
Acoustofluidic devices controlled by cell phones. Bachman, Hunter; Huang, Po-Hsun; Zhao, Shuaiguo; Yang, Shujie; Zhang, Peiran; Fu, Hai; Huang, Tony Jun Lab on a chip. 29302660 2018 Jan 30;
Multi-neuron intracellular recording in vivo via interacting autopatching robots. Kodandaramaiah, Suhasa B; Flores, Francisco J; Holst, Gregory L; Singer, Annabelle C; Han, Xue; Brown, Emery N; Boyden, Edward S; Forest, Craig R eLife. 29297466 2018 01 03;
Microprobe Capillary Electrophoresis Mass Spectrometry for Single-cell Metabolomics in Live Frog (Xenopus laevis) Embryos. Onjiko, Rosemary M; Portero, Erika P; Moody, Sally A; Nemes, Peter Journal of visualized experiments : JoVE. 29286491 2017 Dec 22;
Mammalian Cell Division in 3D Matrices via Quantitative Confocal Reflection Microscopy. He, Lijuan; Sneider, Alexandra; Chen, Weitong; Karl, Michelle; Prasath, Vishnu; Wu, Pei-Hsun; Mattson, Gunnar; Wirtz, Denis Journal of visualized experiments : JoVE. 29286363 2017 11 29;
Evidence for Long-Timescale Patterns of Synaptic Inputs in CA1 of Awake Behaving Mice. Kolb, Ilya; Talei Franzesi, Giovanni; Wang, Michael; Kodandaramaiah, Suhasa B; Forest, Craig R; Boyden, Edward S; Singer, Annabelle C The Journal of neuroscience : the official journal of the Society for Neuroscience. 29279309 2018 Feb 14;
In Vivo Multiscale and Spatially-Dependent Biomechanics Reveals Differential Strain Transfer Hierarchy in Skeletal Muscle. Ghosh, Soham; Cimino, James G; Scott, Adrienne K; Damen, Frederick W; Phillips, Evan H; Veress, Alexander I; Neu, Corey P; Goergen, Craig J ACS biomaterials science & engineering. 29276759 2017 Nov 13;
Nuclear lamin A/C harnesses the perinuclear apical actin cables to protect nuclear morphology. Kim, Jeong-Ki; Louhghalam, Arghavan; Lee, Geonhui; Schafer, Benjamin W; Wirtz, Denis; Kim, Dong-Hwee Nature communications. 29242553 2017 Dec 14;
Microdroplet fusion mass spectrometry: accelerated kinetics of acid-induced chlorophyll demetallation. Lee, Jae Kyoo; Nam, Hong Gil; Zare, Richard N Quarterly reviews of biophysics. 29233214 2017 01;
Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain. Lake, Blue B; Chen, Song; Sos, Brandon C; Fan, Jean; Kaeser, Gwendolyn E; Yung, Yun C; Duong, Thu E; Gao, Derek; Chun, Jerold; Kharchenko, Peter V; Zhang, Kun Nature biotechnology. 29227469 2018 Jan;
Pervasive within-Mitochondrion Single-Nucleotide Variant Heteroplasmy as Revealed by Single-Mitochondrion Sequencing. Morris, Jacqueline; Na, Young-Ji; Zhu, Hua; Lee, Jae-Hee; Giang, Hoa; Ulyanova, Alexandra V; Baltuch, Gordon H; Brem, Steven; Chen, H Isaac; Kung, David K; Lucas, Timothy H; O'Rourke, Donald M; Wolf, John A; Grady, M Sean; Sul, Jai-Yoon; Kim, Junhyong; Eb Cell reports. 29212019 2017 Dec 05;
Eph-ephrin signaling modulated by polymerization and condensation of receptors. Ojosnegros, Samuel; Cutrale, Francesco; Rodríguez, Daniel; Otterstrom, Jason J; Chiu, Chi Li; Hortigüela, Verónica; Tarantino, Carolina; Seriola, Anna; Mieruszynski, Stephen; Martínez, Elena; Lakadamyali, Melike; Raya, Angel; Fraser, Scott E Proceedings of the National Academy of Sciences of the United States of America. 29192024 2017 Dec 12;
Identification of a neural crest stem cell niche by Spatial Genomic Analysis. Lignell, Antti; Kerosuo, Laura; Streichan, Sebastian J; Cai, Long; Bronner, Marianne E Nature communications. 29184067 2017 Nov 28;
Functional MRI can detect changes in intratissue strains in a full thickness and critical sized ovine cartilage defect model. Chan, Deva D; Cai, Luyao; Butz, Kent D; Nauman, Eric A; Dickerson, Darryl A; Jonkers, Ilse; Neu, Corey P Journal of biomechanics. 29169631 2018 01 03;
An In Toto Approach to Dissecting Cellular Interactions in Complex Tissues. Shah, Pavak Kirit; Santella, Anthony; Jacobo, Adrian; Siletti, Kimberly; Hudspeth, A J; Bao, Zhirong Developmental cell. 29161596 2017 Nov 20;
Cell-type Dependent Alzheimer's Disease Phenotypes: Probing the Biology of Selective Neuronal Vulnerability. Muratore, Christina R; Zhou, Constance; Liao, Meichen; Fernandez, Marty A; Taylor, Walter M; Lagomarsino, Valentina N; Pearse 2nd, Richard V; Rice, Heather C; Negri, Joseph M; He, Amy; Srikanth, Priya; Callahan, Dana G; Shin, Taehwan; Zhou, Monica; Bennett, David A; Noggle, Scott; Love, J Christopher; Selkoe, Dennis J; Young-Pearse, Tracy L Stem cell reports. 29153990 2017 12 12;
Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut. Herring, Charles A; Banerjee, Amrita; McKinley, Eliot T; Simmons, Alan J; Ping, Jie; Roland, Joseph T; Franklin, Jeffrey L; Liu, Qi; Gerdes, Michael J; Coffey, Robert J; Lau, Ken S Cell systems. 29153838 2017 Nov 07;
Single-Cell Imaging Using Radioluminescence Microscopy Reveals Unexpected Binding Target for [18F]HFB. Kiru, Louise; Kim, Tae Jin; Shen, Bin; Chin, Frederick T; Pratx, Guillem Molecular imaging and biology. 29143174 2018 06;
Profiling the transcriptome with RNA SPOTs. Eng, Chee-Huat Linus; Shah, Sheel; Thomassie, Julian; Cai, Long Nature methods. 29131163 2017 Dec;
Single-Cell Virology: On-Chip Investigation of Viral Infection Dynamics. Guo, Feng; Li, Sixing; Caglar, Mehmet Umut; Mao, Zhangming; Liu, Wu; Woodman, Andrew; Arnold, Jamie J; Wilke, Claus O; Huang, Tony Jun; Cameron, Craig E Cell reports. 29117571 2017 Nov 07;
EB1 and cytoplasmic dynein mediate protrusion dynamics for efficient 3-dimensional cell migration. Jayatilaka, Hasini; Giri, Anjil; Karl, Michelle; Aifuwa, Ivie; Trenton, Nicholaus J; Phillip, Jude M; Khatau, Shyam; Wirtz, Denis FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 29097501 2018 03;
Zika Virus Infects Intermediate Progenitor Cells and Post-mitotic Committed Neurons in Human Fetal Brain Tissues. Lin, Ming-Yi; Wang, Yi-Ling; Wu, Wan-Lin; Wolseley, Victoria; Tsai, Ming-Ting; Radic, Vladimir; Thornton, Matthew E; Grubbs, Brendan H; Chow, Robert H; Huang, I-Chueh Scientific reports. 29093521 2017 Nov 01;
Efficient Prioritization of Multiple Causal eQTL Variants via Sparse Polygenic Modeling. Nariai, Naoki; Greenwald, William W; DeBoever, Christopher; Li, He; Frazer, Kelly A Genetics. 29074555 2017 12;
Metabolic Comparison of Dorsal versus Ventral Cells Directly in the Live 8-cell Frog Embryo by Microprobe Single-cell CE-ESI-MS. Onjiko, Rosemary M; Plotnick, David O; Moody, Sally A; Nemes, Peter Analytical methods : advancing methods and applications. 29062391 2017 Sep 14;
Acoustic streaming: an arbitrary Lagrangian-Eulerian perspective. Nama, Nitesh; Huang, Tony Jun; Costanzo, Francesco Journal of fluid mechanics. 29051631 2017 Aug 25;
Near-Infrared Fluorescent Proteins Engineered from Bacterial Phytochromes in Neuroimaging. Piatkevich, Kiryl D; Suk, Ho-Jun; Kodandaramaiah, Suhasa B; Yoshida, Fumiaki; DeGennaro, Ellen M; Drobizhev, Mikhail; Hughes, Thomas E; Desimone, Robert; Boyden, Edward S; Verkhusha, Vladislav V Biophysical journal. 29017728 2017 Nov 21;
Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo. Suk, Ho-Jun; van Welie, Ingrid; Kodandaramaiah, Suhasa B; Allen, Brian; Forest, Craig R; Boyden, Edward S Neuron. 28957673 2017 Sep 27;
21st century neurobehavioral theories of decision making in addiction: Review and evaluation. Bickel, Warren K; Mellis, Alexandra M; Snider, Sarah E; Athamneh, Liqa N; Stein, Jeffrey S; Pope, Derek A Pharmacology, biochemistry, and behavior. 28942119 2017 Sep 21;
Group 1 Innate Lymphoid Cell Lineage Identity Is Determined by a cis-Regulatory Element Marked by a Long Non-coding RNA. Mowel, Walter K; McCright, Sam J; Kotzin, Jonathan J; Collet, Magalie A; Uyar, Asli; Chen, Xin; DeLaney, Alexandra; Spencer, Sean P; Virtue, Anthony T; Yang, EnJun; Villarino, Alejandro; Kurachi, Makoto; Dunagin, Margaret C; Pritchard, Gretchen Harms; Stein, Judith; Hughes, Cynthia; Fonseca-Pereira, Diogo; Veiga-Fernandes, Henrique; Raj, Arjun; Kambayashi, Taku; Brodsky, Igor E; O'Shea, John J; Wherry, E John; Goff, Loyal A; Rinn, John L; Williams, Adam; Flavell, Richard A; Henao-Mejia, Jorge Immunity. 28930659 2017 Sep 19;
Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo. Suk, Ho-Jun; van Welie, Ingrid; Kodandaramaiah, Suhasa B; Allen, Brian; Forest, Craig R; Boyden, Edward S Neuron. 28858614 2017 Aug 30;
Single-cell profiling of dynamic cytokine secretion and the phenotype of immune cells. An, Xingyue; Sendra, Victor G; Liadi, Ivan; Ramesh, Balakrishnan; Romain, Gabrielle; Haymaker, Cara; Martinez-Paniagua, Melisa; Lu, Yanbin; Radvanyi, Laszlo G; Roysam, Badrinath; Varadarajan, Navin PloS one. 28837583 2017;
Dissociated and Reconstituted Cartilage Microparticles in Densified Collagen Induce Local hMSC Differentiation. Novak, Tyler; Seelbinder, Benjamin; Twitchell, Celina M; Voytik-Harbin Prof, Sherry L; Neu Prof, Corey P Advanced functional materials. 28824356 2016 Aug 09;
A magnetic micropore chip for rapid ( Ko, Jina; Bhagwat, Neha; Yee, Stephanie S; Black, Taylor; Redlinger, Colleen; Romeo, Janae; O'Hara, Mark; Raj, Arjun; Carpenter, Erica L; Stanger, Ben Z; Issadore, David Lab on a chip. 28809985 2017 Sep 12;
Using Longitudinal Data on Career Outcomes to Promote Improvements and Diversity in Graduate Education. Feig, Andrew L; Robinson, Leah; Yan, Song; Byrd, Mark; Mathur, Ambika Change. 28804143 2016;
Acoustofluidic bacteria separation. Li, Sixing; Ma, Fen; Bachman, Hunter; Cameron, Craig E; Zeng, Xiangqun; Huang, Tony Jun Journal of micromechanics and microengineering : structures, devices, and systems. 28798539 2017 Jan 01;
High-NA open-top selective-plane illumination microscopy for biological imaging. Mcgorty, Ryan; Xie, Dan; Huang, Bo Optics express. 28789271 2017 Jul 24;
Neuronal cell-type classification: challenges, opportunities and the path forward. Zeng, Hongkui; Sanes, Joshua R Nature reviews. Neuroscience 28775344 2017 Sep
Single cell transcriptomics of noncoding RNAs and their cell-specificity. Gawronski, Katerina A B; Kim, Junhyong Wiley interdisciplinary reviews. RNA. 28762653 2017 Nov;
Multifaceted role of BTLA in the control of CD8+ T cell fate after antigen encounter. Ritthipichai, Krit; Haymaker, Cara; Martinez-Paniagua, Melisa; Aschenbrenner, Andrew; Yi, Xiaohui; Zhang, Minying; Kale, Charuta; Hailemichael, Yared; Overwijk, Willem W; Vence, Luis; Roszik, Jason; Varadarajan, Navin; Nurieva, Roza; Radvanyi, Laszlo G; Hwu, Patrick; Bernatchez, Chantale Clinical cancer research : an official journal of the American Association for Cancer Research. 28754817 2017 Jul 28;
Patterned Disordered Cell Motion Ensures Vertebral Column Symmetry. Das, Dipjyoti; Chatti, Veena; Emonet, Thierry; Holley, Scott A Developmental cell. 28743003 2017 07 24;
A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA. Lake, Blue B; Codeluppi, Simone; Yung, Yun C; Gao, Derek; Chun, Jerold; Kharchenko, Peter V; Linnarsson, Sten; Zhang, Kun Scientific reports. 28729663 2017 Jul 20;
Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy. Zhao, Yongxin; Bucur, Octavian; Irshad, Humayun; Chen, Fei; Weins, Astrid; Stancu, Andreea L; Oh, Eun-Young; DiStasio, Marcello; Torous, Vanda; Glass, Benjamin; Stillman, Isaac E; Schnitt, Stuart J; Beck, Andrew H; Boyden, Edward S Nature biotechnology. 28714966 2017 Aug;
Unmassked: Single-Cell Profiling of Immune Cell Populations in Tumors. Varadarajan, Navin Molecular therapy : the journal of the American Society of Gene Therapy. 28684257 2017 Aug 02;
Tissue specific requirements for WNT11 in developing outflow tract and dorsal mesenchymal protrusion. van Vliet, Patrick P; Lin, Lizhu; Boogerd, Cornelis J; Martin, James F; Andelfinger, Gregor; Grossfeld, Paul D; Evans, Sylvia M Developmental biology. 28669819 2017 09 01;
A novel flexible cuff-like microelectrode for dual purpose, acute and chronic electrical interfacing with the mouse cervical vagus nerve. Caravaca, A S; Tsaava, T; Goldman, L; Silverman, H; Riggott, G; Chavan, S S; Bouton, C; Tracey, K J; Desimone, R; Boyden, E S; Sohal, H S; Olofsson, P S Journal of neural engineering. 28628030 2017 12;
Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance. Shaffer, Sydney M; Dunagin, Margaret C; Torborg, Stefan R; Torre, Eduardo A; Emert, Benjamin; Krepler, Clemens; Beqiri, Marilda; Sproesser, Katrin; Brafford, Patricia A; Xiao, Min; Eggan, Elliott; Anastopoulos, Ioannis N; Vargas-Garcia, Cesar A; Singh, Abhyudai; Nathanson, Katherine L; Herlyn, Meenhard; Raj, Arjun Nature. 28607484 ;
Flow Cytometric Characterization of Antigen-Specific T Cells Based on RNA and Its Advantages in Detecting Infections and Immunological Disorders. Radford, Felix; Tyagi, Sanjay; Gennaro, Maria Laura; Pine, Richard; Bushkin, Yuri Critical reviews in immunology. 28605344 2016;
Visualizing adenosine-to-inosine RNA editing in single mammalian cells. Mellis, Ian A; Gupte, Rohit; Raj, Arjun; Rouhanifard, Sara H Nature methods. 28604724 2017 Jun 12;
IgG Fc domains that bind C1q but not effector Fc? receptors delineate the importance of complement-mediated effector functions. Lee, Chang-Han; Romain, Gabrielle; Yan, Wupeng; Watanabe, Makiko; Charab, Wissam; Todorova, Biliana; Lee, Jiwon; Triplett, Kendra; Donkor, Moses; Lungu, Oana I; Lux, Anja; Marshall, Nicholas; Lindorfer, Margaret A; Goff, Odile Richard-Le; Balbino, Bianca; Kang, Tae Hyun; Tanno, Hidetaka; Delidakis, George; Alford, Corrine; Taylor, Ronald P; Nimmerjahn, Falk; Varadarajan, Navin; Bruhns, Pierre; Zhang, Yan Jessie; Georgiou, George Nature immunology. 28604720 2017 Aug;
Single image super-resolution via an iterative reproducing kernel Hilbert space method. Deng, Liang-Jian; Guo, Weihong; Huang, Ting-Zhu IEEE transactions on circuits and systems for video technology : a publication of the Circuits and Systems Society. 28603404 2016 Nov;
Optimized multiplex immunofluorescence single-cell analysis reveals tuft cell heterogeneity. McKinley, Eliot T; Sui, Yunxia; Al-Kofahi, Yousef; Millis, Bryan A; Tyska, Matthew J; Roland, Joseph T; Santamaria-Pang, Alberto; Ohland, Christina L; Jobin, Christian; Franklin, Jeffrey L; Lau, Ken S; Gerdes, Michael J; Coffey, Robert J JCI insight. 28570279 2017 Jun 02;
A robot for high yield electrophysiology and morphology of single neurons in vivo. Li, Lu; Ouellette, Benjamin; Stoy, William A; Garren, Emma J; Daigle, Tanya L; Forest, Craig R; Koch, Christof; Zeng, Hongkui Nature communications. 28569837 2017 Jun 01;
Mesoscale-duration activated states gate spiking in response to fast rises in membrane voltage in the awake brain. Singer, Annabelle C; Talei Franzesi, Giovanni; Kodandaramaiah, Suhasa B; Flores, Francisco J; Cohen, Jeremy D; Lee, Albert K; Börgers, Christoph; Forest, Craig R; Kopell, Nancy J; Boyden, Edward S Journal of neurophysiology. 28566460 2017 May 31;
Synergistic IL-6 and IL-8 paracrine signalling pathway infers a strategy to inhibit tumour cell migration. Jayatilaka, Hasini; Tyle, Pranay; Chen, Jonathan J; Kwak, Minsuk; Ju, Julia; Kim, Hyun Ji; Lee, Jerry S H; Wu, Pei-Hsun; Gilkes, Daniele M; Fan, Rong; Wirtz, Denis Nature communications. 28548090 2017 May 26;
The ''new normal'': Adapting doctoral trainee career preparation for broad career paths in science. St Clair, Rebekah; Hutto, Tamara; MacBeth, Cora; Newstetter, Wendy; McCarty, Nael A; Melkers, Julia PloS one. 28542304 2017;
Assessing the causal relationship between obesity and venous thromboembolism through a Mendelian Randomization study. Lindström, Sara; Germain, Marine; Crous-Bou, Marta; Smith, Erin N; Morange, Pierre-Emmanuel; van Hylckama Vlieg, Astrid; de Haan, Hugoline G; Chasman, Daniel; Ridker, Paul; Brody, Jennifer; de Andrade, Mariza; Heit, John A; Tang, Weihong; DeVivo, Immaculata; Grodstein, Francine; Smith, Nicholas L; Tregouet, David; Kabrhel, Christopher; INVENT Consortium Human genetics. 28528403 2017 Jul;
FISH-Flow, a protocol for the concurrent detection of mRNA and protein in single cells using fluorescence in situ hybridization and flow cytometry. Arrigucci, Riccardo; Bushkin, Yuri; Radford, Felix; Lakehal, Karim; Vir, Pooja; Pine, Richard; Martin, December; Sugarman, Jeffrey; Zhao, Yanlin; Yap, George S; Lardizabal, Alfred A; Tyagi, Sanjay; Gennaro, Maria Laura Nature protocols. 28518171 2017 Jun;
Visualizing Calcium Flux in Freely Moving Nematode Embryos. Ardiel, Evan L; Kumar, Abhishek; Marbach, Joseph; Christensen, Ryan; Gupta, Rishi; Duncan, William; Daniels, Jonathan S; Stuurman, Nico; Colón-Ramos, Daniel; Shroff, Hari Biophysical journal. 28494967 2017 May 09;
A Chimeric Egfr Protein Reporter Mouse Reveals Egfr Localization and Trafficking In Vivo. Yang, Yu-Ping; Ma, Haiting; Starchenko, Alina; Huh, Won Jae; Li, Wei; Hickman, F Edward; Zhang, Qin; Franklin, Jeffrey L; Mortlock, Douglas P; Fuhrmann, Sabine; Carter, Bruce D; Ihrie, Rebecca A; Coffey, Robert J Cell reports. 28494873 2017 May 09;
Development of an optimized synthetic Notch receptor as an in vivo cell-cell contact sensor. He, Li; Huang, Jiuhong; Perrimon, Norbert Proceedings of the National Academy of Sciences of the United States of America. 28490499 2017 05 23;
Assessment of Single Cell RNA-Seq Normalization Methods. Ding, Bo; Zheng, Lina; Wang, Wei G3 (Bethesda, Md.). 28468817 2017 Jul 05;
In Situ Microprobe Single-Cell Capillary Electrophoresis Mass Spectrometry: Metabolic Reorganization in Single Differentiating Cells in the Live Vertebrate (Xenopus laevis) Embryo. Onjiko, Rosemary M; Portero, Erika P; Moody, Sally A; Nemes, Peter Analytical chemistry. 28434226 2017 Jul 05;
Iterative expansion microscopy. Chang, Jae-Byum; Chen, Fei; Yoon, Young-Gyu; Jung, Erica E; Babcock, Hazen; Kang, Jeong Seuk; Asano, Shoh; Suk, Ho-Jun; Pak, Nikita; Tillberg, Paul W; Wassie, Asmamaw T; Cai, Dawen; Boyden, Edward S Nature methods. 28417997 2017 Jun;
High-Throughput and Cost-Effective Characterization of Induced Pluripotent Stem Cells. D'Antonio, Matteo; Woodruff, Grace; Nathanson, Jason L; D'Antonio-Chronowska, Agnieszka; Arias, Angelo; Matsui, Hiroko; Williams, Roy; Herrera, Cheryl; Reyna, Sol M; Yeo, Gene W; Goldstein, Lawrence S B; Panopoulos, Athanasia D; Frazer, Kelly A Stem cell reports. 28410643 2017 Apr 11;
iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types. Panopoulos, Athanasia D; D'Antonio, Matteo; Benaglio, Paola; Williams, Roy; Hashem, Sherin I; Schuldt, Bernhard M; DeBoever, Christopher; Arias, Angelo D; Garcia, Melvin; Nelson, Bradley C; Harismendy, Olivier; Jakubosky, David A; Donovan, Margaret K R; Greenwald, William W; Farnam, KathyJean; Cook, Megan; Borja, Victor; Miller, Carl A; Grinstein, Jonathan D; Drees, Frauke; Okubo, Jonathan; Diffenderfer, Kenneth E; Hishida, Yuriko; Modesto, Veronica; Dargitz, Carl T; Feiring, Rachel; Zhao, Chang; Aguirre, Aitor; McGarry, Thomas J; Matsui, Hiroko; Li, He; Reyna, Joaquin; Rao, Fangwen; O'Connor, Daniel T; Yeo, Gene W; Evans, Sylvia M; Chi, Neil C; Jepsen, Kristen; Nariai, Naoki; Müller, Franz-Josef; Goldstein, Lawrence S B; Izpisua Belmonte, Juan Carlos; Adler, Eric; Loring, Jeanne F; Berggren, W Travis; D'Antonio-Chronowska, Agnieszka; Smith, Erin N; Frazer, Kelly A Stem cell reports. 28410642 2017 Apr 11;
High-Throughput and Cost-Effective Characterization of Induced Pluripotent Stem Cells. D'Antonio, Matteo; Woodruff, Grace; Nathanson, Jason L; D'Antonio-Chronowska, Agnieszka; Arias, Angelo; Matsui, Hiroko; Williams, Roy; Herrera, Cheryl; Reyna, Sol M; Yeo, Gene W; Goldstein, Lawrence S B; Panopoulos, Athanasia D; Frazer, Kelly A Stem cell reports. 28392217 2017 Apr 04;
iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types. Panopoulos, Athanasia D; D'Antonio, Matteo; Benaglio, Paola; Williams, Roy; Hashem, Sherin I; Schuldt, Bernhard M; DeBoever, Christopher; Arias, Angelo D; Garcia, Melvin; Nelson, Bradley C; Harismendy, Olivier; Jakubosky, David A; Donovan, Margaret K R; Greenwald, William W; Farnam, KathyJean; Cook, Megan; Borja, Victor; Miller, Carl A; Grinstein, Jonathan D; Drees, Frauke; Okubo, Jonathan; Diffenderfer, Kenneth E; Hishida, Yuriko; Modesto, Veronica; Dargitz, Carl T; Feiring, Rachel; Zhao, Chang; Aguirre, Aitor; McGarry, Thomas J; Matsui, Hiroko; Li, He; Reyna, Joaquin; Rao, Fangwen; O'Connor, Daniel T; Yeo, Gene W; Evans, Sylvia M; Chi, Neil C; Jepsen, Kristen; Nariai, Naoki; Müller, Franz-Josef; Goldstein, Lawrence S B; Izpisua Belmonte, Juan Carlos; Adler, Eric; Loring, Jeanne F; Berggren, W Travis; D'Antonio-Chronowska, Agnieszka; Smith, Erin N; Frazer, Kelly A Stem cell reports. 28392216 2017 Apr 03;
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