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Reference Materials

Internet Resources

Report of the Epigenomics program resources:


Epigenomics 101 Wiki Exit Disclaimer

Epigenomics Help: Learn how searching and filtering can be performed to identify samples and experiments in the Epigenomics database and how to select, save and view these records. Exit Disclaimer


Entrez Help: How to use Entrez for basic searches. Exit Disclaimer


Third Epigenomics Workshop Lectures:

http://brl.bcm.tmc.edu/EpigeneticsWorkshopMarch2012.rhtml Exit Disclaimer


Genboree FAQs:

http://genboree.org/theCommons/ezfaq/index/epigenome-workshop Exit Disclaimer


Genboree Workbench Use Cases:

http://genboree.org/theCommons/projects/workshop-march-2012/wiki/use_cases Exit Disclaimer

Computational Analysis


RMAP aims to accurately map reads from the next-generation sequencing technology. Exit Disclaimer


STAR Pipeline developed by Wei Wang's group, is a pipeline to assist processing, visualization and analysis of sequencing data. Exit Disclaimer


The STAR genome browser provides an online browsing system that allows easy search and visualization of a large number of epigenomic data Exit Disclaimer

Tutorials (Videos)

Washington University Human Epigenome Browser tutorial Exit Disclaimer


Spark Tool for data visualization Exit Disclaimer


NCBI YouTube Channel Exit Disclaimer


Epigenomics: How to View Track Data

http://youtu.be/dM9_ieXzAr8 Exit Disclaimer


Epigenomics: How to Download Data

http://youtu.be/BT1pwf460VY Exit Disclaimer


Epigenomics: Using the Sample Browser

http://youtu.be/n68QAqHlcv8 Exit Disclaimer



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