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Reference Materials

Internet Resources

Report of the Epigenomics program resources:

Epigenomics 101 Wiki

Epigenomics Help: Learn how searching and filtering can be performed to identify samples and experiments in the Epigenomics database and how to select, save and view these records. 

Entrez Help: How to use Entrez for basic searches. 

Third Epigenomics Workshop Lectures 

Genboree FAQs 

Genboree Workbench, Getting Started 

 

Tutorials (Videos)

Washington University Human Epigenome Browser tutorial
 
Spark Tool for data visualization 
 
NCBI YouTube Channel
 
Epigenomics: How to View Track Data
http://youtu.be/dM9_ieXzAr8
 
Epigenomics: How to Download Data
http://youtu.be/BT1pwf460VY
 
Epigenomics: Using the Sample Browser
http://youtu.be/n68QAqHlcv8
 

Computational Analysis

RMAP aims to accurately map reads from the next-generation sequencing technology. 

STAR Pipeline developed by Wei Wang's group, is a pipeline to assist processing, visualization and analysis of sequencing data. 

The STAR genome browser provides an online browsing system that allows easy search and visualization of a large number of epigenomic data 

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