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Funded Research

Enhancing GTEx with molecular analyses of stored biospecimens (U01) RFA-RM-12-009
PI Name Institution Name Title
AKEY, JOSHUA MICHAEL UNIVERSITY OF WASHINGTON Comprehensively assessing human somatic variability and its influence on gene exp
FEINBERG, ANDREW P JOHNS HOPKINS UNIVERSITY Strategic mapping of tissue and population methylation for mental health research
KELLIS, MANOLIS MASSACHUSETTS INSTITUTE OF TECHNOLOGY Epigenomic variation atlas across human tissues and individuals in GTEx
LI, JIN BILLY STANFORD UNIVERSITY HIGH RESOLUTION ALLELE SPECIFIC EXPRESSION ASSAYS
PIERCE, BRANDON LEE THE UNIVERSITY OF CHICAGO Telomere length and chromosomal instability across various tissue types
SNYDER, MICHAEL P (contact)
TANG, HUA
STANFORD UNIVERSITY Genotype-Tissue-Protein: proteomic variation and quantitative trait loci (pQTL)
STAMATOYANNOPOULOS, JOHN A UNIVERSITY OF WASHINGTON High-resolution mapping of DNaseI hypersensitive regulatory DNA in GTEx samples
STRANGER, BARBARA E UNIVERSITY OF CHICAGO The genetic basis of cross-tissue protein expression variability in humans

 

Development and Application of Systems Approaches for Analyzing the Impact of Genomic Variation on Tissue Transcriptomes (R01) RFA-RM-12-019
PI Name Institution Name Title
BROWN, CHRISTOPHER DAVID (contact)
ENGELHARDT, BARBARA ELIZABETH
UNIVERSITY OF PENNSYLVANIA Identification and validation of cell specific eQTLs by Bayesian modeling
CONRAD, DONALD F. WASHINGTON UNIVERSITY MODELING THE EFFECTS OF STRUCTURAL VARIATION IN GTEX DATA AND MENDELIAN DISEASE
COX, NANCY J. (contact)
NICOLAE, DAN LIVIU
UNIVERSITY OF CHICAGO Harnessing GTEx to Create Transcriptome Knowledge and Inform Disease Biology
DERMITZAKIS, EMMANOUIL (contact)
BUSTAMANTE, CARLOS D.
GUIGO, RODERIC
MCCARTHY, MARK IAN
UNIVERSITY OF GENEVA Methods for high-resolution analysis of genetic effects on gene expression
SABATTI, CHIARA STANFORD UNIVERSITY Genetic Regulation of Gene Expression and its Impact on Phenotypes
STEPHENS, MATTHEW UNIVERSITY OF CHICAGO Statistical analysis of gene expression quantitative trait loci (eQTL)
WRIGHT, FRED A. (contact)
NOBEL, ANDREW B
UNIVERSITY OF NORTH CAROLINA CHAPEL HILL Systems approaches to link tissue-specific expression to disease

 

Novel statistical methods for human gene expression quantitative trait loci (eQTL) analysis (R01) RFA-RM-09-006
PI Name Institution Name Title
COX, NANCY J UNIVERSITY OF CHICAGO Using the Transcriptome for SNP and Gene Annotation
DERMITZAKIS, EMMANOUIL (contact) GUIGO, RODERIC KOLLER, DAPHNE MCCARTHY, MARK IAN UNIVERSITY OF GENEVA Methods for high-resolution analysis of genetic effects on gene expression
LIU, JUN S HARVARD UNIVERSITY Epistatic and Cross Tissue Analysis for Human Gene Expression Traits
PRITCHARD, JONATHAN K UNIVERSITY OF CHICAGO Statistical analysis of gene expression quantitative trait loci (eQTL)
RUSYN, IVAN (contact) NOBEL, ANDREW B WRIGHT, FRED A. UNIVERSITY OF NORTH CAROLINA CHAPEL HILL FACILITATING GTEx, DISEASE, AND GxE ANALYSES VIA FAST EXPRESSION (e)QTL MAPPING
 

Contracts

 

Laboratory, Data Analysis, and Coordinating Center (LDACC). Solicitation Number: LDACC-10-01
PI Name Institution Name Title
KRISTIN ARDLIE, WENDY WINCKLER BROAD INSTITUTE, INC. Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Genotype-Tissue Expression (GTEx) Project - A NIH Common Fund Initiative

 

caHUB Acquisition of Normal Tissues in Support of the GTEx Project Solicitation Number: S10-120
PI Name Institution Name Title
JOHN LONSDALE, JEFFREY THOMAS NATIONAL DISEASE RESEARCH INTERCHANGE caHUB Acquisition of Normal Tissues in Support of the GTEx Project
BARBARA FOSTER ROSWELL PARK CANCER INSTITUTE caHUB Acquisition of Normal Tissues in Support of the GTEx Project
HAROLD MAGAZINE MARK KARTUB SCIENCE CARE, INC. caHUB Acquisition of Normal Tissues in Support of the GTEx Project
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