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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
Protein Capture Reagents (64)
| Publication Title | Authors | Journal | Publication Date | Page No | PubMedID |
|---|---|---|---|---|---|
| A comparison of phosphospecific affinity reagents reveals the utility of recombinant Forkhead-associated domains in recognizing phosphothreonine-containing peptides. | Venegas, Leon A; Pershad, Kritika; Bankole, Oluwadamilola; Shah, Noman; Kay, Brian K | New biotechnology. | 2016 Jan 6; | 26772725 | |
| Applications in high-content functional protein microarrays. | Moore, Cedric D; Ajala, Olutobi Z; Zhu, Heng | Current opinion in chemical biology. | 2016 Feb; | 26599287 | |
| Deep sequencing in library selection projects: what insight does it bring? | Glanville, J; D'Angelo, S; Khan, T A; Reddy, S T; Naranjo, L; Ferrara, F; Bradbury, A R M | Current opinion in structural biology. | 2015 Aug; | 146-60 | 26451649 |
| Streamlining the Pipeline for Generation of Recombinant Affinity Reagents by Integrating the Affinity Maturation Step. | Huang, Renhua; Gorman, Kevin T; Vinci, Chris R; Dobrovetsky, Elena; Gräslund, Susanne; Kay, Brian K | International journal of molecular sciences. | 2015; | 23587-603 | 26437402 |
| Optimizing Production of Antigens and Fabs in the Context of Generating Recombinant Antibodies to Human Proteins. | Zhong, Nan; Loppnau, Peter; Seitova, Alma; Ravichandran, Mani; Fenner, Maria; Jain, Harshika; Bhattacharya, Anandi; Hutchinson, Ashley; Paduch, Marcin; Lu, Vincent; Olszewski, Michal; Kossiakoff, Anthony A; Dowdell, Evan; Koide, Akiko; Koide, Shohei; Huang, Haiming; Nadeem, Vincent; Sidhu, Sachdev S; Greenblatt, Jack F; Marcon, Edyta; Arrowsmith, Cheryl H; Edwards, Aled M; Gräslund, Susanne | PloS one. | 2015; | e0139695 | 26437229 |
| Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. | Shortreed, Michael R; Wenger, Craig D; Frey, Brian L; Sheynkman, Gloria M; Scalf, Mark; Keller, Mark P; Attie, Alan D; Smith, Lloyd M | Journal of proteome research. | 2015 Nov 6; | 4714-20 | 26418581 |
| Systematic Prediction of Scaffold Proteins Reveals New Design Principles in Scaffold-Mediated Signal Transduction. | Hu, Jianfei; Neiswinger, Johnathan; Zhang, Jin; Zhu, Heng; Qian, Jiang | PLoS computational biology. | 2015 Sep; | e1004508 | 26393507 |
| Comparative analysis of eukaryotic cell-free expression systems. | Hartsough, Emily M; Shah, Pankti; Larsen, Andrew C; Chaput, John C | BioTechniques. | 2015 Sep; | 149-51 | 26345507 |
| A High Through-put Platform for Recombinant Antibodies to Folded Proteins. | Hornsby, Michael; Paduch, Marcin; Miersch, Shane; Sääf, Annika; Matsuguchi, Tet; Lee, Brian; Wypisniak, Karolina; Doak, Allison; King, Daniel; Usatyuk, Svitlana; Perry, Kimberly; Lu, Vince; Thomas, William; Luke, Judy; Goodman, Jay; Hoey, Robert J; Lai, Darson; Griffin, Carly; Li, Zhijian; Vizeacoumar, Franco J; Dong, Debbie; Campbell, Elliot; Anderson, Stephen; Zhong, Nan; Gräslund, Susanne; Koide, Shohei; Moffat, Jason; Sidhu, Sachdev; Kossiakoff, Anthony; Wells, James | Molecular & cellular proteomics : MCP. | 2015 Oct; | 2833-47 | 26290498 |
| A New Versatile Immobilization Tag Based on the Ultra High Affinity and Reversibility of the Calmodulin-Calmodulin Binding Peptide Interaction. | Mukherjee, Somnath; Ura, Marcin; Hoey, Robert J; Kossiakoff, Anthony A | Journal of molecular biology. | 2015 Aug 14; | 2707-25 | 26159704 |
| Carbon Substrates: A Stable Foundation for Biomolecular Arrays. | Lockett, Matthew R; Smith, Lloyd M | Annual review of analytical chemistry (Palo Alto, Calif.). | 2015; | 263-85 | 26048550 |
| Integrated electrochemical microsystems for genetic detection of pathogens at the point of care. | Hsieh, Kuangwen; Ferguson, B Scott; Eisenstein, Michael; Plaxco, Kevin W; Soh, H Tom | Accounts of chemical research. | 2015 Apr 21; | 911-20 | 25785632 |
| Characterization of monoclonal antibody's binding kinetics using oblique-incidence reflectivity difference approach. | Liu, Shuang; Zhang, Hongyan; Dai, Jun; Hu, Shaohu; Pino, Ignacio; Eichinger, Daniel J; Lyu, Huibin; Zhu, Heng | mAbs. | 2015; | 110-9 | 25530170 |
| Recombinant renewable polyclonal antibodies. | Ferrara, Fortunato; D'Angelo, Sara; Gaiotto, Tiziano; Naranjo, Leslie; Tian, Hongzhao; Graslund, Susanne; Dobrovetsky, Elena; Hraber, Peter; Lund-Johansen, Fridtjof; Saragozza, Silvia; Sblattero, Daniele; Kiss, Csaba; Bradbury, Andrew R M | mAbs. | 2015; | 32-41 | 25530082 |
| Large scale production of phage antibody libraries using a bioreactor. | Ferrara, Fortunato; Kim, Chang-Yub; Naranjo, Leslie A; Bradbury, Andrew R M | mAbs. | 2015; | 26-31 | 25524379 |
| In vivo elimination of parental clones in general and site-directed mutagenesis. | Holland, Erika G; Acca, Felicity E; Belanger, Kristina M; Bylo, Mary E; Kay, Brian K; Weiner, Michael P; Kiss, Margaret M | Journal of immunological methods. | 2015 Feb; | 67-75 | 25523926 |
| Array-based discovery of aptamer pairs. | Cho, Minseon; Oh, Seung Soo; Nie, Jeff; Stewart, Ron; Radeke, Monte J; Eisenstein, Michael; Coffey, Peter J; Thomson, James A; Soh, H Tom | Analytical chemistry. | 2015 Jan 6; | 821-8 | 25495696 |
| An improved single-chain Fab platform for efficient display and recombinant expression. | Koerber, James T; Hornsby, Michael J; Wells, James A | Journal of molecular biology. | 2015 Jan 30; | 576-86 | 25481745 |
| Automated solid-phase synthesis of high capacity oligo-dT cellulose for affinity purification of poly-A tagged biomolecules. | Sau, Sujay P; Larsen, Andrew C; Chaput, John C | Bioorganic & medicinal chemistry letters. | 2014 Dec 15; | 5692-4 | 25467163 |
| Applications for an engineered Protein-G variant with a pH controllable affinity to antibody fragments. | Bailey, Lucas J; Sheehy, Kimberly M; Hoey, Robert J; Schaefer, Zachary P; Ura, Marcin; Kossiakoff, Anthony A | Journal of immunological methods. | 2014 Dec 15; | 24-30 | 25450256 |
| Enzymatic fabrication of high-density RNA arrays. | Wu, Cheng-Hsien; Holden, Matthew T; Smith, Lloyd M | Angewandte Chemie (International ed. in English). | 2014 Dec 1; | 13514-7 | 25339581 |
| Synthetic aptamer-polymer hybrid constructs for programmed drug delivery into specific target cells. | Oh, Seung Soo; Lee, Bongjae F; Leibfarth, Frank A; Eisenstein, Michael; Robb, Maxwell J; Lynd, Nathaniel A; Hawker, Craig J; Soh, H Tom | Journal of the American Chemical Society. | 2014 Oct 22; | 15010-5 | 25290917 |
| From deep sequencing to actual clones. | D'Angelo, Sara; Kumar, Sandeep; Naranjo, Leslie; Ferrara, Fortunato; Kiss, Csaba; Bradbury, Andrew R M | Protein engineering, design & selection : PEDS. | 2014 Oct; | 301-7 | 25183780 |
| Aptamer-based cell imaging reagents capable of fluorescence switching. | Jung, Yun Kyung; Woo, Min-Ah; Soh, H Tom; Park, Hyun Gyu | Chemical communications (Cambridge, England). | 2014 Oct 21; | 12329-32 | 25182171 |
| Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations. | Sheynkman, Gloria M; Johnson, James E; Jagtap, Pratik D; Shortreed, Michael R; Onsongo, Getiria; Frey, Brian L; Griffin, Timothy J; Smith, Lloyd M | BMC genomics. | 2014; | 703 | 25149441 |
| General approach for characterizing in vitro selected peptides with protein binding affinity. | Larsen, Andrew C; Gillig, Annabelle; Shah, Pankti; Sau, Sujay P; Fenton, Kathryn E; Chaput, John C | Analytical chemistry. | 2014 Aug 5; | 7219-23 | 24970615 |
| MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers. | Jiang, Peng; Meyer, Susanne; Hou, Zhonggang; Propson, Nicholas E; Soh, H Tom; Thomson, James A; Stewart, Ron | Bioinformatics (Oxford, England). | 2014 Sep 15; | 2665-7 | 24872422 |
| Development of a full-length human protein production pipeline. | Saul, Justin; Petritis, Brianne; Sau, Sujay; Rauf, Femina; Gaskin, Michael; Ober-Reynolds, Benjamin; Mineyev, Irina; Magee, Mitch; Chaput, John; Qiu, Ji; LaBaer, Joshua | Protein science : a publication of the Protein Society | 2014 Aug | 1123-35 | 24806540 |
| Label-free, real-time detection of the dynamic processes of protein degradation using oblique-incidence reflectivity difference method. | Liu, S; Zhu, J H; He, L P; Dai, J; Lu, H B; Wu, L; Jin, K J; Yang, G Z; Zhu, H | Applied physics letters | 2014 Apr 21 | 163701 | 24803682 |
| Particle Display: A Quantitative Screening Method for Generating High-Affinity Aptamers. | Wang, Jinpeng; Gong, Qiang; Maheshwari, Nupur; Eisenstein, Michael; Arcila, Mary Luz; Kosik, Kenneth S; Soh, H Tom | Angewandte Chemie (International ed. in English) | 2014 Mar 18 | NULL | 24644057 |
| An improved Protein G with higher affinity for human/rabbit IgG Fc domains exploiting a computationally designed polar network. | Jha, Ramesh K; Gaiotto, Tiziano; Bradbury, Andrew R M; Strauss, Charlie E M | Protein engineering, design & selection : PEDS | 2014 Apr | 127-34 | 24632761 |
| Accurate Zygote-Specific Discrimination of Single-Nucleotide Polymorphisms Using Microfluidic Electrochemical DNA Melting Curves. | Yang, Allen H J; Hsieh, Kuangwen; Patterson, Adriana S; Ferguson, B Scott; Eisenstein, Michael; Plaxco, Kevin W; Soh, H Tom | Angewandte Chemie (International ed. in English) | 2014 Feb 12 | NULL | 24520069 |
| The antibody mining toolbox: an open source tool for the rapid analysis of antibody repertoires. | D'Angelo, Sara; Glanville, Jacob; Ferrara, Fortunato; Naranjo, Leslie; Gleasner, Cheryl D; Shen, Xiaohong; Bradbury, Andrew R M; Kiss, Csaba | mAbs | 2014 Jan-Feb | 160-72 | 24423623 |
| Real-time, aptamer-based tracking of circulating therapeutic agents in living animals. | Ferguson, Brian Scott; Hoggarth, David A; Maliniak, Dan; Ploense, Kyle; White, Ryan J; Woodward, Nick; Hsieh, Kuangwen; Bonham, Andrew J; Eisenstein, Michael; Kippin, Tod E; Plaxco, Kevin W; Soh, Hyongsok Tom | Science translational medicine | 2013 Nov 27 | 213ra165 | 24285484 |
| PhosphoNetworks: a database for human phosphorylation networks. | Hu, Jianfei; Rho, Hee-Sool; Newman, Robert H; Zhang, Jin; Zhu, Heng; Qian, Jiang | Bioinformatics (Oxford, England) | 2014 Jan 1 | 141-2 | 24227675 |
| In vitro selection of shape-changing DNA nanostructures capable of binding-induced cargo release. | Oh, Seung Soo; Plakos, Kory; Xiao, Yi; Eisenstein, Michael; Soh, H Tom | ACS nano | 2013 Nov 26 | 9675-83 | 24168267 |
| Quantitative selection and parallel characterization of aptamers. | Cho, Minseon; Soo Oh, Seung; Nie, Jeff; Stewart, Ron; Eisenstein, Michael; Chambers, James; Marth, Jamey D; Walker, Faye; Thomson, James A; Soh, H Tom | Proceedings of the National Academy of Sciences of the United States of America | 2013 Nov 12 | 18460-5 | 24167271 |
| A human proteome microarray identifies that the heterogeneous nuclear ribonucleoprotein K (hnRNP K) recognizes the 5' terminal sequence of the hepatitis C virus RNA. | Fan, Baochang; Lu, Kuan-Yi; Reymond Sutandy, F X; Chen, Yi-Wen; Konan, Kouacou; Zhu, Heng; Kao, C Cheng; Chen, Chien-Sheng | Molecular & cellular proteomics : MCP | 2014 Jan | 84-92 | 24113282 |
| Phage display technology for human monoclonal antibodies. | Deantonio, Cecilia; Cotella, Diego; Macor, Paolo; Santoro, Claudio; Sblattero, Daniele | Methods in molecular biology (Clifton, N.J.) | 2014 | 277-95 | 24037846 |
| DNA methylation presents distinct binding sites for human transcription factors. | Hu, Shaohui; Wan, Jun; Su, Yijing; Song, Qifeng; Zeng, Yaxue; Nguyen, Ha Nam; Shin, Jaehoon; Cox, Eric; Rho, Hee Sool; Woodard, Crystal; Xia, Shuli; Liu, Shuang; Lyu, Huibin; Ming, Guo-Li; Wade, Herschel; Song, Hongjun; Qian, Jiang; Zhu, Heng | eLife. | 2013; | e00726 | 24015356 |
| Development of an efficient targeted cell-SELEX procedure for DNA aptamer reagents. | Meyer, Susanne; Maufort, John P; Nie, Jeff; Stewart, Ron; McIntosh, Brian E; Conti, Lisa R; Ahmad, Kareem M; Soh, H Tom; Thomson, James A | PloS one | 2013 | e71798 | 23967247 |
| VirD: a virion display array for profiling functional membrane proteins. | Hu, Shaohui; Feng, Yingzhu; Henson, Brandon; Wang, Bochu; Huang, Xiaofang; Li, Min; Desai, Prashant; Zhu, Heng | Analytical chemistry | 2013 Sep 3 | 8046-54 | 23941274 |
| Specific binder for Lightning-Linkýý biotinylated proteins from an antibody phage library. | Ferrara, Fortunato; Naranjo, Leslie A; D'Angelo, Sara; Kiss, Csaba; Bradbury, Andrew R M | Journal of immunological methods | 2013 Sep 30 | 83-7 | 23850993 |
| AXM mutagenesis: An efficient means for the production of libraries for directed evolution of proteins | Holland EG, Buhr DL, Acca FE, Alderman D, Bovat K, Busygina V, Kay BK, Weiner MP, Kiss MM | J Immunol Methods | 2013 Aug 30 | 55-61 | 23680235 |
| Construction of human activity-based phosphorylation networks. | Newman, Robert H; Hu, Jianfei; Rho, Hee-Sool; Xie, Zhi; Woodard, Crystal; Neiswinger, John; Cooper, Christopher; Shirley, Matthew; Clark, Hillary M; Hu, Shaohui; Hwang, Woochang; Jeong, Jun Seop; Wu, George; Lin, Jimmy; Gao, Xinxin; Ni, Qiang; Goel, Renu; | Molecular systems biology | 2013 | 655 | 23549483 |
| Construction of human activity-based phosphorylation networks. | Newman, Robert H; Hu, Jianfei; Rho, Hee-Sool; Xie, Zhi; Woodard, Crystal; Neiswinger, John; Cooper, Christopher; Shirley, Matthew; Clark, Hillary M; Hu, Shaohui; Hwang, Woochang; Jeong, Jun Seop; Wu, George; Lin, Jimmy; Gao, Xinxin; Ni, Qiang; Goel, Renu; Xia, Shuli; Ji, Hongkai; Dalby, Kevin N; Birnbaum, Morris J; Cole, Philip A; Knapp, Stefan; Ryazanov, Alexey G; Zack, Donald J; Blackshaw, Seth; Pawson, Tony; Gingras, Anne-Claude; Desiderio, Stephen; Pandey, Akhilesh; Turk, Benjamin E; Zhang, Jin; Zhu, Heng; Qian, Jiang | Molecular systems biology | 2013 | 655 | 23549483 |
| Overview of protein microarrays. | Sutandy, F X Reymond; Qian, Jiang; Chen, Chien-Sheng; Zhu, Heng | Current protocols in protein science / editorial board, John E. Coligan ... [et al.] | 2013 Apr | Unit 27.1 | 23546620 |
| New centromere autoantigens identified in systemic sclerosis using centromere protein microarrays. | Song, Guang; Hu, Chaojun; Zhu, Heng; Wang, Li; Zhang, Fengchun; Li, Yongzhe; Wu, Lin | The Journal of rheumatology | 2013 Apr | 461-8 | 23418382 |
| Interactome mapping: using protein microarray technology to reconstruct diverse protein networks. | Uzoma, Ijeoma; Zhu, Heng | Genomics, proteomics & bioinformatics | 2013 Feb | 18-28 | 23395178 |
| Generating conformation-specific synthetic antibodies to trap proteins in selected functional states | Paduch M, Koide A, Uysal S, Rizk SS, Koide S, Kossiakoff AA | Methods | 2013 Mar 15 | 3-14 | 23280336 |
| Generating conformation-specific synthetic antibodies to trap proteins in selected functional states. | Paduch, Marcin; Koide, Akiko; Uysal, Serdar; Rizk, Shahir S; Koide, Shohei; Kossiakoff, Anthony A | Methods (San Diego, Calif.) | 2013 Mar 15 | 3-14 | 23280336 |
| Generating thermal stable variants of protein domains through phage display. | Pershad, Kritika; Kay, Brian K | Methods (San Diego, Calif.) | 2013 Mar 15 | 38-45 | 23276752 |
| Fabrication of oligonucleotide and protein arrays on rigid and flexible substrates coated with reactive polymer multilayers. | Broderick, Adam H; Carter, Matthew C D; Lockett, Matthew R; Smith, Lloyd M; Lynn, David M | ACS applied materials & interfaces | 2013 Jan 23 | 351-9 | 23237360 |
| CDR-H3 diversity is not required for antigen recognition by synthetic antibodies. | Persson, Helena; Ye, Wei; Wernimont, Amy; Adams, Jarrett J; Koide, Akiko; Koide, Shohei; Lam, Robert; Sidhu, Sachdev S | Journal of molecular biology | 2013 Feb 22 | 803-11 | 23219464 |
| Controlling the function of DNA nanostructures with specific trigger sequences. | Deborggraeve, Stijn; Dai, Jian Yuan; Xiao, Yi; Soh, Hyongsok Tom | Chemical communications (Cambridge, England) | 2013 Jan 14 | 397-9 | 23192255 |
| Selection is more intelligent than design: improving the affinity of a bivalent ligand through directed evolution. | Ahmad, Kareem M; Xiao, Yi; Soh, H Tom | Nucleic acids research | 2012 Dec | 11777-83 | 23042245 |
| Functional protein microarray as molecular decathlete: a versatile player in clinical proteomics. | Zhu, Heng; Cox, Eric; Qian, Jiang | Proteomics. Clinical applications | 2012 Dec | 548-62 | 23027439 |
| Directed evolution of the forkhead-associated domain to generate anti-phosphospecific reagents by phage display. | Pershad, Kritika; Wypisniak, Karolina; Kay, Brian K | Journal of molecular biology | 2012 Nov 23 | 88-103 | 22985966 |
| Improvements to the Kunkel mutagenesis protocol for constructing primary and secondary phage-display libraries. | Huang, Renhua; Fang, Pete; Kay, Brian K | Methods (San Diego, Calif.) | 2012 Sep | 10-7 | 22959950 |
| Use of micro-emulsion technology for the directed evolution of antibodies. | Buhr DL, Acca FE, Holland EG, Johnson K, Maksymiuk GM, Vaill A, Kay BK, Weitz DA, Weiner MP, Kiss MM. | Methods | 2012 Sep | 58, 28-33 | 22819852 |
| SH3 domains come of age. | Kay, Brian K | FEBS letters | 2012 Aug 14 | 2606-8 | 22683951 |
| Selection strategy to generate aptamer pairs that bind to distinct sites on protein targets. | Gong, Qiang; Wang, Jinpeng; Ahmad, Kareem M; Csordas, Andrew T; Zhou, Jiehua; Nie, Jeff; Stewart, Ron; Thomson, James A; Rossi, John J; Soh, H Tom | Analytical chemistry | 2012 Jun 19 | 5365-71 | 22624874 |
| Isolation of monobodies that bind specifically to the SH3 domain of the Fyn tyrosine protein kinase. | Huang R, Fang P, Kay BK. | N Biotechnol | 2012 Jun 15 | 29, 526-533 | 22155429 |
| A roadmap to generate renewable protein binders to the human proteome. | Colwill, Karen; Renewable Protein Binder Working Group; Graslund, Susanne | Nature methods. | 2011 Jul; | 551-8 | 21572409 |