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Publication TitleAuthorsJournalPublication DatePage NoPubMedID
ýýýý*ýýý-targeted copper nanoparticles incorporating an Sn 2 lipase-labile fumagillin prodrug for photoacoustic neovascular imaging and treatment.Zhang, Ruiying; Pan, Dipanjan; Cai, Xin; Yang, Xiaoxia; Senpan, Angana; Allen, John S; Lanza, Gregory M; Wang, Lihong VTheranostics.2015;124-3325553103
Optical focusing deep inside dynamic scattering media with near-infrared time-reversed ultrasonically encoded (TRUE) light.Liu, Yan; Lai, Puxiang; Ma, Cheng; Xu, Xiao; Grabar, Alexander A; Wang, Lihong VNature communications.2015;590425556918
The evolution of drug resistance in clinical isolates of Candida albicans.Ford, Christopher B; Funt, Jason M; Abbey, Darren; Issi, Luca; Guiducci, Candace; Martinez, Diego A; Delorey, Toni; Li, Bi Yu; White, Theodore C; Cuomo, Christina; Rao, Reeta P; Berman, Judith; Thompson, Dawn A; Regev, AviveLife.2015;e0066225646566
Nonlytic spread of naked viruses.Bird, Sara W; Kirkegaard, KarlaAutophagy.2015;430-125680079
Multiscale modelling of relationships between protein classes and drug behavior across all diseases using the CANDO platform.Sethi, Geetika; Chopra, Gaurav; Samudrala, RamMini reviews in medicinal chemistry.2015;705-1725694071
Multiple facets for extracellular matrix mimicking in regenerative medicine.Zhang, Yu Shrike; Xia, YounanNanomedicine (London, England).2015;689-9225816873
Direct protein delivery to mammalian cells using cell-permeable Cys2-His2 zinc-finger domains.Gaj, Thomas; Liu, JiaJournal of visualized experiments : JoVE.2015;25866937
Three-dimensional photoacoustic endoscopic imaging of the rabbit esophagus.Yang, Joon Mo; Favazza, Christopher; Yao, Junjie; Chen, Ruimin; Zhou, Qifa; Shung, K Kirk; Wang, Lihong VPloS one.2015;e012026925874640
Cells change their sensitivity to an EGF morphogen gradient to control EGF-induced gene expression.van Zon, Jeroen Sebastiaan; Kienle, Simone; Huelsz-Prince, Guizela; Barkoulas, Michalis; van Oudenaarden, AlexanderNature communications.2015;705325958991
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes.Beliveau, Brian J; Boettiger, Alistair N; Avendaño, Maier S; Jungmann, Ralf; McCole, Ruth B; Joyce, Eric F; Kim-Kiselak, Caroline; Bantignies, Frédéric; Fonseka, Chamith Y; Erceg, Jelena; Hannan, Mohammed A; Hoang, Hien G; Colognori, David; Lee, Jeannie T; Shih, William M; Yin, Peng; Zhuang, Xiaowei; Wu, Chao-tingNature communications.2015;714725962338
Ultrasonic-heating-encoded photoacoustic tomography with virtually augmented detection view.Wang, Lidai; Li, Guo; Xia, Jun; Wang, Lihong VOptica.2015;307-31225984555
Prolonged Period of Cortical Plasticity upon Redox Dysregulation in Fast-Spiking Interneurons.Morishita, Hirofumi; Cabungcal, Jan-Harry; Chen, Ying; Do, Kim Q; Hensch, Takao KBiological psychiatry.2015 Sep 15;396-40225758057
Photoacoustic microscopy: superdepth, superresolution, and superb contrast.Yao, Junjie; Song, Liang; Wang, Lihing VIEEE pulse.2015 May-Jun;34-725974913
Antibody engineering for increased potency, breadth and half-life.Sievers, Stuart A; Scharf, Louise; West Jr, Anthony P; Bjorkman, Pamela JCurrent opinion in HIV and AIDS.2015 May;151-925760931
Association between assisted reproductive technology conception and autism in California, 1997-2007.Fountain, Christine; Zhang, Yujia; Kissin, Dmitry M; Schieve, Laura A; Jamieson, Denise J; Rice, Catherine; Bearman, PeterAmerican journal of public health.2015 May;963-7125790396
Genome-wide profiling of the C. elegans dsRNAome.Whipple, Joseph M; Youssef, Osama A; Aruscavage, P Joseph; Nix, David A; Hong, Changjin; Johnson, W Evan; Bass, Brenda LRNA (New York, N.Y.).2015 May;786-80025805852
High-speed label-free functional photoacoustic microscopy of mouse brain in action.Yao, Junjie; Wang, Lidai; Yang, Joon-Mo; Maslov, Konstantin I; Wong, Terence T W; Li, Lei; Huang, Chih-Hsien; Zou, Jun; Wang, Lihong VNature methods.2015 May;407-1025822799
High-throughput functional genomics using CRISPR-Cas9.Shalem, Ophir; Sanjana, Neville E; Zhang, FengNature reviews. Genetics.2015 May;299-31125854182
Interaction with WDR5 promotes target gene recognition and tumorigenesis by MYC.Thomas, Lance R; Wang, Qingguo; Grieb, Brian C; Phan, Jason; Foshage, Audra M; Sun, Qi; Olejniczak, Edward T; Clark, Travis; Dey, Soumyadeep; Lorey, Shelly; Alicie, Bethany; Howard, Gregory C; Cawthon, Bryan; Ess, Kevin C; Eischen, Christine M; Zhao, Zhongming; Fesik, Stephen W; Tansey, William PMolecular cell.2015 May 7;440-5225818646
Drosophila dicer-2 cleavage is mediated by helicase- and dsRNA termini-dependent states that are modulated by Loquacious-PD.Sinha, Niladri K; Trettin, Kyle D; Aruscavage, P Joseph; Bass, Brenda LMolecular cell.2015 May 7;406-1725891075
Discovery of tricyclic indoles that potently inhibit Mcl-1 using fragment-based methods and structure-based design.Burke, Jason P; Bian, Zhiguo; Shaw, Subrata; Zhao, Bin; Goodwin, Craig M; Belmar, Johannes; Browning, Carrie F; Vigil, Dominico; Friberg, Anders; Camper, DeMarco V; Rossanese, Olivia W; Lee, Taekyu; Olejniczak, Edward T; Fesik, Stephen WJournal of medicinal chemistry.2015 May 14;3794-80525844895
Noninvasive imaging of immune responses.Rashidian, Mohammad; Keliher, Edmund J; Bilate, Angelina M; Duarte, Joao N; Wojtkiewicz, Gregory R; Jacobsen, Johanne Tracey; Cragnolini, Juanjo; Swee, Lee Kim; Victora, Gabriel D; Weissleder, Ralph; Ploegh, Hidde LProceedings of the National Academy of Sciences of the United States of America.2015 May 12;6146-5125902531
Multiscale Functional and Molecular Photoacoustic Tomography.Yao, Junjie; Xia, Jun; Wang, Lihong VUltrasonic imaging.2015 May 1;25933617
Focal Points, Endogenous Processes, and Exogenous Shocks in the Autism Epidemic.Liu, Kayuet; Bearman, Peter SSociological methods & research.2015 May 1;272-30526166907
Intracellular expression of camelid single-domain antibodies specific for influenza virus nucleoprotein uncovers distinct features of its nuclear localization.Ashour, Joseph; Schmidt, Florian I; Hanke, Leo; Cragnolini, Juanjo; Cavallari, Marco; Altenburg, Arwen; Brewer, Rebeccah; Ingram, Jessica; Shoemaker, Charles; Ploegh, Hidde LJournal of virology.2015 Mar;2792-80025540369
The evolution of bacterial mechanosensitive channels.Booth, Ian R; Miller, Samantha; Muller, Axel; Lehtovirta-Morley, LauraCell calcium.2015 Mar;140-5025591932
Cultural variation in emotion perception is real: a response to Sauter, Eisner, Ekman, and Scott (2015).Gendron, Maria; Roberson, Debi; Barrett, Lisa FeldmanPsychological science.2015 Mar;357-925608863
Sparse feature selection identifies H2A.Z as a novel, pattern-specific biomarker for asymmetrically self-renewing distributed stem cells.Huh, Yang Hoon; Noh, Minsoo; Burden, Frank R; Chen, Jennifer C; Winkler, David A; Sherley, James LStem cell research.2015 Mar;144-5425636161
Perspectives on best practices for gene therapy programs.Cheever, Thomas R; Berkley, Dale; Braun, Serge; Brown, Robert H; Byrne, Barry J; Chamberlain, Jeffrey S; Cwik, Valerie; Duan, Dongsheng; Federoff, Howard J; High, Katherine A; Kaspar, Brian K; Klinger, Katherine W; Larkindale, Jane; Lincecum, John; Mavilio, Fulvio; McDonald, Cheryl L; McLaughlin, James; Weiss McLeod, Bonnie; Mendell, Jerry R; Nuckolls, Glen; Stedman, Hansell H; Tagle, Danilo A; Vandenberghe, Luk H; Wang, Hao; Wernett, Pamela J; Wilson, James M; Porter, John D; Gubitz, Amelie KHuman gene therapy.2015 Mar;127-3325654329
Noninvasive photoacoustic microscopy of methemoglobin in vivo.Tang, Min; Zhou, Yong; Zhang, Ruiying; Wang, Lihong VJournal of biomedical optics.2015 Mar;3600725760655
Improved estimation and interpretation of correlations in neural circuits.Yatsenko, Dimitri; Josi?, Kre?imir; Ecker, Alexander S; Froudarakis, Emmanouil; Cotton, R James; Tolias, Andreas SPLoS computational biology.2015 Mar;e100408325826696
Structural biology. Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor.Burg, John S; Ingram, Jessica R; Venkatakrishnan, A J; Jude, Kevin M; Dukkipati, Abhiram; Feinberg, Evan N; Angelini, Alessandro; Waghray, Deepa; Dror, Ron O; Ploegh, Hidde L; Garcia, K ChristopherScience (New York, N.Y.).2015 Mar 6;1113-725745166
Hypothalamic POMC neurons promote cannabinoid-induced feeding.Koch, Marco; Varela, Luis; Kim, Jae Geun; Kim, Jung Dae; Hernández-Nuño, Francisco; Simonds, Stephanie E; Castorena, Carlos M; Vianna, Claudia R; Elmquist, Joel K; Morozov, Yury M; Rakic, Pasko; Bechmann, Ingo; Cowley, Michael A; Szigeti-Buck, Klara; Dietrich, Marcelo O; Gao, Xiao-Bing; Diano, Sabrina; Horvath, Tamas LNature.2015 Mar 5;45-5025707796
High relaxivity Gd(III)-DNA gold nanostars: investigation of shape effects on proton relaxation.Rotz, Matthew W; Culver, Kayla S B; Parigi, Giacomo; MacRenaris, Keith W; Luchinat, Claudio; Odom, Teri W; Meade, Thomas JACS nano.2015 Mar 24;3385-9625723190
Reassessment of Piwi binding to the genome and Piwi impact on RNA polymerase II distribution.Lin, Haifan; Chen, Mengjie; Kundaje, Anshul; Valouev, Anton; Yin, Hang; Liu, Na; Neuenkirchen, Nils; Zhong, Mei; Snyder, MichaelDevelopmental cell.2015 Mar 23;772-425805139
Elucidation of the concise biosynthetic pathway of the communesin indole alkaloids.Lin, Hsiao-Ching; Chiou, Grace; Chooi, Yit-Heng; McMahon, Travis C; Xu, Wei; Garg, Neil K; Tang, YiAngewandte Chemie (International ed. in English).2015 Mar 2;3004-725571861
Hypothalamic Agrp neurons drive stereotypic behaviors beyond feeding.Dietrich, Marcelo O; Zimmer, Marcelo R; Bober, Jeremy; Horvath, Tamas LCell.2015 Mar 12;1222-3225748653
Genome-wide CRISPR screen in a mouse model of tumor growth and metastasis.Chen, Sidi; Sanjana, Neville E; Zheng, Kaijie; Shalem, Ophir; Lee, Kyungheon; Shi, Xi; Scott, David A; Song, Jun; Pan, Jen Q; Weissleder, Ralph; Lee, Hakho; Zhang, Feng; Sharp, Phillip ACell.2015 Mar 12;1246-6025748654
Optical-resolution photoacoustic endomicroscopy in vivo.Yang, Joon-Mo; Li, Chiye; Chen, Ruimin; Rao, Bin; Yao, Junjie; Yeh, Cheng-Hung; Danielli, Amos; Maslov, Konstantin; Zhou, Qifa; Shung, K Kirk; Wang, Lihong VBiomedical optics express.2015 Mar 1;918-3225798315
Probabilistic Common Spatial Patterns for Multichannel EEG Analysis.Wu, Wei; Chen, Zhe; Gao, Xiaorong; Li, Yuanqing; Brown, Emery N; Gao, ShangkaiIEEE transactions on pattern analysis and machine intelligence.2015 Mar 1;639-65326005228
Measuring the signal-to-noise ratio of a neuron.Czanner, Gabriela; Sarma, Sridevi V; Ba, Demba; Eden, Uri T; Wu, Wei; Eskandar, Emad; Lim, Hubert H; Temereanca, Simona; Suzuki, Wendy A; Brown, Emery NProceedings of the National Academy of Sciences of the United States of America.2015 Jun 9;7141-625995363
Chemoenzymatic syntheses of water-soluble lipid I fluorescent probes.Mitachi, Katsuhiko; Siricilla, Shajila; Klaic, Lada; Clemons Jr, William M; Kurosu, MichioTetrahedron letters.2015 Jun 3;3441-344626190869
Epigenetic genome mining of an endophytic fungus leads to the pleiotropic biosynthesis of natural products.Mao, Xu-Ming; Xu, Wei; Li, Dehai; Yin, Wen-Bing; Chooi, Yit-Heng; Li, Yong-Quan; Tang, Yi; Hu, YoucaiAngewandte Chemie (International ed. in English).2015 Jun 22;7592-626013262
Quantitative two-photon imaging of fluorescent biosensors.Yellen, Gary; Mongeon, RebeccaCurrent opinion in chemical biology.2015 Jun 12;24-3026079046
Basal exon skipping and genetic pleiotropy: A predictive model of disease pathogenesis.Drivas, Theodore G; Wojno, Adam P; Tucker, Budd A; Stone, Edwin M; Bennett, JeanScience translational medicine.2015 Jun 10;291ra9726062849
Nitrous oxide-induced slow and delta oscillations.Pavone, Kara J; Akeju, Oluwaseun; Sampson, Aaron L; Ling, Kelly; Purdon, Patrick L; Brown, Emery NClinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology.2015 Jun 10;26118489
Ultra-large field-of-view two-photon microscopy.Tsai, Philbert S; Mateo, Celine; Field, Jeffrey J; Schaffer, Chris B; Anderson, Matthew E; Kleinfeld, DavidOptics express.2015 Jun 1;13833-4726072755
Engineering strategies for the fermentative production of plant alkaloids in yeast.Trenchard, Isis J; Smolke, Christina DMetabolic engineering.2015 Jul;96-10425981946
Dexterous robotic manipulation of alert adult Drosophila for high-content experimentation.Savall, Joan; Ho, Eric Tatt Wei; Huang, Cheng; Maxey, Jessica R; Schnitzer, Mark JNature methods.2015 Jul;657-6026005812
Piwi Is a Key Regulator of Both Somatic and Germline Stem Cells in the Drosophila Testis.Gonzalez, Jacob; Qi, Hongying; Liu, Na; Lin, HaifanCell reports.2015 Jul 7;150-6126119740
Reference-free removal of EEG-fMRI ballistocardiogram artifacts with harmonic regression.Krishnaswamy, Pavitra; Bonmassar, Giorgio; Poulsen, Catherine; Pierce, Eric T; Purdon, Patrick L; Brown, Emery NNeuroImage.2015 Jul 5;26151100
PIKfyve mediates the motility of late endosomes and lysosomes in neuronal dendrites.Tsuruta, Fuminori; Dolmetsch, Ricardo ENeuroscience letters.2015 Jul 29;18-2326232680
Engineered CRISPR-Cas9 nucleases with altered PAM specificities.Kleinstiver, Benjamin P; Prew, Michelle S; Tsai, Shengdar Q; Topkar, Ved V; Nguyen, Nhu T; Zheng, Zongli; Gonzales, Andrew P W; Li, Zhuyun; Peterson, Randall T; Yeh, Jing-Ruey Joanna; Aryee, Martin J; Joung, J KeithNature.2015 Jul 23;481-526098369
De novo production of the key branch point benzylisoquinoline alkaloid reticuline in yeast.Trenchard, Isis J; Siddiqui, Michael S; Thodey, Kate; Smolke, Christina DMetabolic engineering.2015 Jul 10;74-8326166409
Direct in vivo assessment of human stem cell graft-host neural circuits.Byers, Blake; Lee, Hyun Joo; Liu, Jia; Weitz, Andrew J; Lin, Peter; Zhang, Pengbo; Shcheglovitov, Aleksandr; Dolmetsch, Ricardo; Pera, Renee Reijo; Lee, Jin HyungNeuroImage.2015 Jul 1;328-3725936696
In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9.Swiech, Lukasz; Heidenreich, Matthias; Banerjee, Abhishek; Habib, Naomi; Li, Yinqing; Trombetta, John; Sur, Mriganka; Zhang, FengNature biotechnology.2015 Jan;102-625326897
Germs are germs, and why not take a risk? Patients' expectations for prescribing antibiotics in an inner-city emergency department.Broniatowski, David A; Klein, Eili Y; Reyna, Valerie FMedical decision making : an international journal of the Society for Medical Decision Making.2015 Jan;60-725331913
Directed evolution of APEX2 for electron microscopy and proximity labeling.Lam, Stephanie S; Martell, Jeffrey D; Kamer, Kimberli J; Deerinck, Thomas J; Ellisman, Mark H; Mootha, Vamsi K; Ting, Alice YNature methods.2015 Jan;51-425419960
In vivo deep brain imaging of rats using oral-cavity illuminated photoacoustic computed tomography.Lin, Li; Xia, Jun; Wong, Terence T W; Li, Lei; Wang, Lihong VJournal of biomedical optics.2015 Jan;1601925611865
Constructing cities, deconstructing scaling laws.Arcaute, Elsa; Hatna, Erez; Ferguson, Peter; Youn, Hyejin; Johansson, Anders; Batty, MichaelJournal of the Royal Society, Interface / the Royal Society.2015 Jan 6;2014074525411405
Mouse-human experimental epigenetic analysis unmasks dietary targets and genetic liability for diabetic phenotypes.Multhaup, Michael L; Seldin, Marcus M; Jaffe, Andrew E; Lei, Xia; Kirchner, Henriette; Mondal, Prosenjit; Li, Yuanyuan; Rodriguez, Varenka; Drong, Alexander; Hussain, Mehboob; Lindgren, Cecilia; McCarthy, Mark; Naslund, Erik; Zierath, Juleen R; Wong, G William; Feinberg, Andrew PCell metabolism.2015 Jan 6;138-4925565211
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.Konermann, Silvana; Brigham, Mark D; Trevino, Alexandro E; Joung, Julia; Abudayyeh, Omar O; Barcena, Clea; Hsu, Patrick D; Habib, Naomi; Gootenberg, Jonathan S; Nishimasu, Hiroshi; Nureki, Osamu; Zhang, FengNature.2015 Jan 29;583-825494202
Intra-spike crosslinking overcomes antibody evasion by HIV-1.Galimidi, Rachel P; Klein, Joshua S; Politzer, Maria S; Bai, Shiyu; Seaman, Michael S; Nussenzweig, Michel C; West Jr, Anthony P; Bjorkman, Pamela JCell.2015 Jan 29;433-4625635457
The Brain Basis of Positive and Negative Affect: Evidence from a Meta-Analysis of the Human Neuroimaging Literature.Lindquist, Kristen A; Satpute, Ajay B; Wager, Tor D; Weber, Jochen; Barrett, Lisa FeldmanCerebral cortex (New York, N.Y. : 1991).2015 Jan 28;25631056
Optogenetic activation of cholinergic neurons in the PPT or LDT induces REM sleep.Van Dort, Christa J; Zachs, Daniel P; Kenny, Jonathan D; Zheng, Shu; Goldblum, Rebecca R; Gelwan, Noah A; Ramos, Daniel M; Nolan, Michael A; Wang, Karen; Weng, Feng-Ju; Lin, Yingxi; Wilson, Matthew A; Brown, Emery NProceedings of the National Academy of Sciences of the United States of America.2015 Jan 13;584-925548191
The rate of osmotic downshock determines the survival probability of bacterial mechanosensitive channel mutants.Bialecka-Fornal, Maja; Lee, Heun Jin; Phillips, RobJournal of bacteriology.2015 Jan 1;231-725349158
Modulation depth estimation and variable selection in state-space models for neural interfaces.Malik, Wasim Q; Hochberg, Leigh R; Donoghue, John P; Brown, Emery NIEEE transactions on bio-medical engineering.2015 Feb;570-8125265627
GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.Tsai, Shengdar Q; Zheng, Zongli; Nguyen, Nhu T; Liebers, Matthew; Topkar, Ved V; Thapar, Vishal; Wyvekens, Nicolas; Khayter, Cyd; Iafrate, A John; Le, Long P; Aryee, Martin J; Joung, J KeithNature biotechnology.2015 Feb;187-9725513782
Association of assisted reproductive technology (ART) treatment and parental infertility diagnosis with autism in ART-conceived children.Kissin, D M; Zhang, Y; Boulet, S L; Fountain, C; Bearman, P; Schieve, L; Yeargin-Allsopp, M; Jamieson, D JHuman reproduction (Oxford, England).2015 Feb;454-6525518976
A split-Cas9 architecture for inducible genome editing and transcription modulation.Zetsche, Bernd; Volz, Sara E; Zhang, FengNature biotechnology.2015 Feb;139-4225643054
Tripling the detection view of high-frequency linear-array-based photoacoustic computed tomography by using two planar acoustic reflectors.Li, Guo; Xia, Jun; Wang, Kun; Maslov, Konstantin; Anastasio, Mark A; Wang, Lihong VQuantitative imaging in medicine and surgery.2015 Feb;57-6225694954
The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot.Sardana, Richa; Liu, Xin; Granneman, Sander; Zhu, Jieyi; Gill, Michael; Papoulas, Ophelia; Marcotte, Edward M; Tollervey, David; Correll, Carl C; Johnson, Arlen WPLoS biology.2015 Feb;e100208325710520
A theoretical justification for single molecule peptide sequencing.Swaminathan, Jagannath; Boulgakov, Alexander A; Marcotte, Edward MPLoS computational biology.2015 Feb;e100408025714988
Photoacoustically guided wavefront shaping for enhanced optical focusing in scattering media.Lai, Puxiang; Wang, Lidai; Tay, Jian Wei; Wang, Lihong VNature photonics.2015 Feb;126-13225914725
Handheld photoacoustic probe to detect both melanoma depth and volume at high speed in vivo.Zhou, Yong; Li, Guo; Zhu, Liren; Li, Chiye; Cornelius, Lynn A; Wang, Lihong VJournal of biophotonics.2015 Feb 9;25676898
16p11.2 Deletion Syndrome Mice Display Sensory and Ultrasonic Vocalization Deficits During Social Interactions.Yang, Mu; Mahrt, Elena J; Lewis, Freeman; Foley, Gillian; Portmann, Thomas; Dolmetsch, Ricardo E; Portfors, Christine V; Crawley, Jacqueline NAutism research : official journal of the International Society for Autism Research.2015 Feb 7;25663600
A platform for rapid exploration of aging and diseases in a naturally short-lived vertebrate.Harel, Itamar; Benayoun, Bérénice A; Machado, Ben; Singh, Param Priya; Hu, Chi-Kuo; Pech, Matthew F; Valenzano, Dario Riccardo; Zhang, Elisa; Sharp, Sabrina C; Artandi, Steven E; Brunet, AnneCell.2015 Feb 26;1013-2625684364
Optical drug monitoring: photoacoustic imaging of nanosensors to monitor therapeutic lithium in vivo.Cash, Kevin J; Li, Chiye; Xia, Jun; Wang, Lihong V; Clark, Heather AACS nano.2015 Feb 24;1692-825588028
Tunable loading of oligonucleotides with secondary structure on gold nanoparticles through a pH-driven method.Dam, Duncan Hieu M; Lee, Hyojin; Lee, Raymond C; Kim, Ki Hun; Kelleher, Neil L; Odom, Teri WBioconjugate chemistry.2015 Feb 18;279-8525564799
A self-assembling lanthanide molecular nanoparticle for optical imaging.Brown, Katherine A; Yang, Xiaoping; Schipper, Desmond; Hall, Justin W; DePue, Lauren J; Gnanam, Annie J; Arambula, Jonathan F; Jones, Jessica N; Swaminathan, Jagannath; Dieye, Yakhya; Vadivelu, Jamuna; Chandler, Don J; Marcotte, Edward M; Sessler, Jonathan L; Ehrlich, Lauren I R; Jones, Richard ADalton transactions (Cambridge, England : 2003).2015 Feb 14;2667-7525512085
Intrinsic connectivity in the human brain does not reveal networks for 'basic' emotions.Touroutoglou, Alexandra; Lindquist, Kristen A; Dickerson, Bradford C; Barrett, Lisa FeldmanSocial cognitive and affective neuroscience.2015 Feb 12;25680990
Robust control of burst suppression for medical coma.Westover, M Brandon; Kim, Seong-Eun; Ching, ShiNung; Purdon, Patrick L; Brown, Emery NJournal of neural engineering.2015 Aug;4600426020243
A cationic cysteine-hydrazide as an enrichment tool for the mass spectrometric characterization of bacterial free oligosaccharides.Jang, Kyoung-Soon; Nani, Roger R; Kalli, Anastasia; Levin, Sergiy; Müller, Axel; Hess, Sonja; Reisman, Sarah E; Clemons Jr, William MAnalytical and bioanalytical chemistry.2015 Aug;6181-9026100547
The evolving capabilities of rhodopsin-based genetically encoded voltage indicators.Gong, YiyangCurrent opinion in chemical biology.2015 Aug;84-926143170
Dysregulation of FMRP/mTOR Signaling Cascade in Hypoxic-Ischemic Injury of Premature Human Brain.Lechpammer, Mirna; Wintermark, Pia; Merry, Katherine M; Jackson, Michele C; Jantzie, Lauren L; Jensen, Frances EJournal of child neurology.2015 Aug 3;26239490
Structured Variability in Purkinje Cell Activity during Locomotion.Sauerbrei, Britton A; Lubenov, Evgueniy V; Siapas, Athanassios GNeuron.2015 Aug 19;840-5226291165
Clinical Electroencephalography for Anesthesiologists: Part I: Background and Basic Signatures.Purdon, Patrick L; Sampson, Aaron; Pavone, Kara J; Brown, Emery NAnesthesiology.2015 Aug 14;26275092
In Silico Reconstruction of the Viral Evolutionary Lineage Yields a Potent Gene Therapy Vector.Zinn, Eric; Pacouret, Simon; Khaychuk, Vadim; Turunen, Heikki T; Carvalho, Livia S; Andres-Mateos, Eva; Shah, Samiksha; Shelke, Rajani; Maurer, Anna C; Plovie, Eva; Xiao, Ru; Vandenberghe, Luk HCell reports.2015 Aug 11;1056-6826235624
Biodistribution and in vivo toxicity of aptamer-loaded gold nanostars.Dam, Duncan Hieu M; Culver, Kayla S B; Kandela, Irawati; Lee, Raymond C; Chandra, Kavita; Lee, Hyojin; Mantis, Christine; Ugolkov, Andrey; Mazar, Andrew P; Odom, Teri WNanomedicine : nanotechnology, biology, and medicine.2015 Apr;671-925461281
Chloride cotransporter NKCC1 inhibitor bumetanide protects against white matter injury in a rodent model of periventricular leukomalacia.Jantzie, Lauren L; Hu, Melody Y; Park, Hyun-Kyung; Jackson, Michele C; Yu, Jenny; Maxwell, Jessie R; Jensen, Frances EPediatric research.2015 Apr;554-6225585037
Mechanism of automaticity in cardiomyocytes derived from human induced pluripotent stem cells.Kim, Jong J; Yang, Lei; Lin, Bo; Zhu, Xiaodong; Sun, Bin; Kaplan, Aaron D; Bett, Glenna C L; Rasmusson, Randall L; London, Barry; Salama, GuyJournal of molecular and cellular cardiology.2015 Apr;81-9325644533
Robust and fragile aspects of cortical blood flow in relation to the underlying angioarchitecture.Shih, Andy Y; Rühlmann, Charlotta; Blinder, Pablo; Devor, Anna; Drew, Patrick J; Friedman, Beth; Knutsen, Per M; Lyden, Patrick D; Matéo, Céline; Mellander, Lisa; Nishimura, Nozomi; Schaffer, Chris B; Tsai, Philbert S; Kleinfeld, DavidMicrocirculation (New York, N.Y. : 1994).2015 Apr;204-1825705966
A Bayesian model of category-specific emotional brain responses.Wager, Tor D; Kang, Jian; Johnson, Timothy D; Nichols, Thomas E; Satpute, Ajay B; Barrett, Lisa FeldmanPLoS computational biology.2015 Apr;e100406625853490
In vivo genome editing using Staphylococcus aureus Cas9.Ran, F Ann; Cong, Le; Yan, Winston X; Scott, David A; Gootenberg, Jonathan S; Kriz, Andrea J; Zetsche, Bernd; Shalem, Ophir; Wu, Xuebing; Makarova, Kira S; Koonin, Eugene V; Sharp, Phillip A; Zhang, FengNature.2015 Apr 9;186-9125830891
HypE-specific nanobodies as tools to modulate HypE-mediated target AMPylation.Truttmann, Matthias C; Wu, Qin; Stiegeler, Sarah; Duarte, Joao N; Ingram, Jessica; Ploegh, Hidde LThe Journal of biological chemistry.2015 Apr 3;9087-10025678711
Quantifying Pituitary-Adrenal Dynamics and Deconvolution of Concurrent Cortisol and Adrenocorticotropic Hormone Data by Compressed Sensing.Faghih, Rose; Dahleh, Munther; Adler, Gail; Klerman, Elizabeth; Brown, EmeryIEEE transactions on bio-medical engineering.2015 Apr 29;25935025
Neuronal Activity and CaMKII Regulate Kinesin-Mediated Transport of Synaptic AMPARs.Hoerndli, Frédéric J; Wang, Rui; Mellem, Jerry E; Kallarackal, Angy; Brockie, Penelope J; Thacker, Colin; Madsen, David M; Maricq, Andres VNeuron.2015 Apr 22;457-7425843407
Tandem prenyltransferases catalyze isoprenoid elongation and complexity generation in biosynthesis of quinolone alkaloids.Zou, Yi; Zhan, Zhajun; Li, Dehai; Tang, Mancheng; Cacho, Ralph A; Watanabe, Kenji; Tang, YiJournal of the American Chemical Society.2015 Apr 22;4980-325859931
Potential role for snoRNAs in PKR activation during metabolic stress.Youssef, Osama A; Safran, Sarah A; Nakamura, Takahisa; Nix, David A; Hotamisligil, Gokhan S; Bass, Brenda LProceedings of the National Academy of Sciences of the United States of America.2015 Apr 21;5023-825848059
N-Sulfonyl-?-lactam hapten as an effective labeling reagent for aldolase mAb.Inokuma, Tsubasa; Fuller, Roberta P; Barbas 3rd, Carlos FBioorganic & medicinal chemistry letters.2015 Apr 15;1684-725791455
What Is Next for Retinal Gene Therapy?Vandenberghe, Luk HCold Spring Harbor perspectives in medicine.2015 Apr 15;25877395
Does language do more than communicate emotion?Lindquist, Kristen A; Satpute, Ajay B; Gendron, MariaCurrent directions in psychological science.2015 Apr 1;99-10825983400
Live-cell imaging of cytosolic NADH-NAD+ redox state using a genetically encoded fluorescent biosensor.Hung, Yin Pun; Yellen, GaryMethods in molecular biology (Clifton, N.J.).2014;83-9524052382
Reconstitution of contractile actomyosin arrays.Murrell, Michael; Thoresen, Todd; Gardel, MargaretMethods in enzymology.2014;265-8224630112
Generating human neurons in vitro and using them to understand neuropsychiatric disease.Pa?ca, Sergiu P; Panagiotakos, Georgia; Dolmetsch, Ricardo EAnnual review of neuroscience.2014;479-50125002278
Prion propagation can occur in a prokaryote and requires the ClpB chaperone.Yuan, Andy H; Garrity, Sean J; Nako, Entela; Hochschild, AnneLife.2014;e0294925122461
How lamina-associated polypeptide 1 (LAP1) activates Torsin.Sosa, Brian A; Demircioglu, F Esra; Chen, James Z; Ingram, Jessica; Ploegh, Hidde L; Schwartz, Thomas UeLife.2014;e0323925149450
Levels of circulating myeloid subpopulations and of heme oxygenase-1 do not predict CD4(+) T cell recovery after the initiation of antiretroviral therapy for HIV disease.Seu, Lillian; Ortiz, Gabriel M; Burt, Trevor D; Deeks, Steven G; Martin, Jeffrey N; McCune, Joseph MAIDS research and therapy.2014;2725180041
Lanthanide nano-drums: a new class of molecular nanoparticles for potential biomedical applications.Jones, Richard A; Gnanam, Annie J; Arambula, Jonathan F; Jones, Jessica N; Swaminathan, Jagannath; Yang, Xiaoping; Schipper, Desmond; Hall, Justin W; DePue, Lauren J; Dieye, Yakhya; Vadivelu, Jamuna; Chandler, Don J; Marcotte, Edward M; Sessler, Jonathan L; Ehrlich, Lauren I R; Brown, Katherine AFaraday discussions.2014;241-5525284181
Dominant drug targets suppress the emergence of antiviral resistance.Tanner, Elizabeth J; Liu, Hong-mei; Oberste, M Steven; Pallansch, Mark; Collett, Marc S; Kirkegaard, KarlaeLife.2014;25365453
A Drosophila toolkit for the visualization and quantification of viral replication launched from transgenic genomes.Wernet, Mathias F; Klovstad, Martha; Clandinin, Thomas RPloS one.2014;e11209225386852
Genome engineering with custom recombinases.Gaj, Thomas; Barbas 3rd, Carlos FMethods in enzymology.2014;79-9125398336
Imaging changes in the cytosolic ATP-to-ADP ratio.Tantama, Mathew; Yellen, GaryMethods in enzymology.2014;355-7125416365
Disruption of thalamic functional connectivity is a neural correlate of dexmedetomidine-induced unconsciousness.Akeju, Oluwaseun; Loggia, Marco L; Catana, Ciprian; Pavone, Kara J; Vazquez, Rafael; Rhee, James; Contreras Ramirez, Violeta; Chonde, Daniel B; Izquierdo-Garcia, David; Arabasz, Grae; Hsu, Shirley; Habeeb, Kathleen; Hooker, Jacob M; Napadow, Vitaly; Brown, Emery N; Purdon, Patrick LeLife.2014;e0449925432022
Facile characterization of aptamer kinetic and equilibrium binding properties using surface plasmon resonance.Chang, Andrew L; McKeague, Maureen; Smolke, Christina DMethods in enzymology.2014;451-6625432760
Decreased H3K27 and H3K4 trimethylation on mortal chromosomes in distributed stem cells.Huh, Y H; Sherley, J LCell death & disease.2014;e155425476902
The influence of promoter architectures and regulatory motifs on gene expression in Escherichia coli.Rydenfelt, Mattias; Garcia, Hernan G; Cox 3rd, Robert Sidney; Phillips, RobPloS one.2014;e11434725549361
Multi-view optical resolution photoacoustic microscopy.Zhu, Liren; Li, Lei; Gao, Liang; Wang, Lihong VOptica.2014;217-22225558469
Data access for the 1,000 Plants (1KP) project.Matasci, Naim; Hung, Ling-Hong; Yan, Zhixiang; Carpenter, Eric J; Wickett, Norman J; Mirarab, Siavash; Nguyen, Nam; Warnow, Tandy; Ayyampalayam, Saravanaraj; Barker, Michael; Burleigh, J Gordon; Gitzendanner, Matthew A; Wafula, Eric; Der, Joshua P; dePamphilis, Claude W; Roure, Beatrice; Philippe, Herve; Ruhfel, Brad R; Miles, Nicholas W; Graham, Sean W; Mathews, Sarah; Surek, Barbara; Melkonian, Michael; Soltis, Douglas E; Soltis, Pamela S; Rothfels, Carl; Pokorny, Lisa; Shaw, Jonathan A; DeGironimo, Lisa; Stevenson, Dennis W; Villarreal, Juan Carlos; Chen, Tao; Kutchan, Toni M; Rolf, Megan; Baucom, Regina S; Deyholos, Michael K; Samudrala, Ram; Tian, Zhijian; Wu, Xiaolei; Sun, Xiao; Zhang, Yong; Wang, Jun; Leebens-Mack, Jim; Wong, Gane Ka-ShuGigaScience.2014;1725625010
Photoacoustic tomography: principles and advances.Xia, Jun; Yao, Junjie; Wang, Lihong VElectromagnetic waves (Cambridge, Mass.).2014;22-Jan25642127
Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi.Cacho, Ralph A; Tang, Yi; Chooi, Yit-HengFrontiers in microbiology.2014;77425642215
Differences in neural circuitry guiding behavioral responses to polarized light presented to either the dorsal or ventral retina in Drosophila.Velez, Mariel M; Gohl, Daryl; Clandinin, Thomas R; Wernet, Mathias FJournal of neurogenetics.2014 Sep-Dec;348-6024912584
A method for the second-site screening of K-Ras in the presence of a covalently attached first-site ligand.Sun, Qi; Phan, Jason; Friberg, Anders R; Camper, DeMarco V; Olejniczak, Edward T; Fesik, Stephen WJournal of biomolecular NMR.2014 Sep;4-Nov25087006
Efficient transduction and optogenetic stimulation of retinal bipolar cells by a synthetic adeno-associated virus capsid and promoter.Cronin, Therese; Vandenberghe, Luk H; Hantz, Peter; Juttner, Josephine; Reimann, Andreas; Kacso, Agota-Enikýý; Huckfeldt, Rachel M; Busskamp, Volker; Kohler, Hubertus; Lagali, Pamela S; Roska, Botond; Bennett, JeanEMBO molecular medicine.2014 Sep;1175-9025092770
''Utilizing'' signal detection theory.Lynn, Spencer K; Barrett, Lisa FeldmanPsychological science.2014 Sep;1663-7325097061
Microvascular quantification based on contour-scanning photoacoustic microscopy.Yeh, Chenghung; Soetikno, Brian; Hu, Song; Maslov, Konstantin I; Wang, Lihong VJournal of biomedical optics.2014 Sep;9601125223708
The ins and outs of viral infection: keystone meeting review.Bird, Sara W; Kirkegaard, Karla; Agbandje-McKenna, Mavis; Freed, Eric OViruses.2014 Sep;3652-6225256395
Structural characterization of anti-inflammatory immunoglobulin G Fc proteins.Ahmed, Alysia A; Giddens, John; Pincetic, Andrew; Lomino, Joseph V; Ravetch, Jeffrey V; Wang, Lai-Xi; Bjorkman, Pamela JJournal of molecular biology.2014 Sep 9;3166-7925036289
Nonlytic viral spread enhanced by autophagy components.Bird, Sara Whitney; Maynard, Nathaniel D; Covert, Markus W; Kirkegaard, KarlaProceedings of the National Academy of Sciences of the United States of America.2014 Sep 9;13081-625157142
Amygdala task-evoked activity and task-free connectivity independently contribute to feelings of arousal.Touroutoglou, Alexandra; Bickart, Kevin C; Barrett, Lisa Feldman; Dickerson, Bradford CHuman brain mapping.2014 Oct;5316-2724862171
Stressing the limits of focal adhesion mechanosensitivity.Oakes, Patrick W; Gardel, Margaret LCurrent opinion in cell biology.2014 Oct;68-7324998185
Differential targeting of feline photoreceptors by recombinant adeno-associated viral vectors: implications for preclinical gene therapy trials.Minella, A L; Mowat, F M; Willett, K L; Sledge, D; Bartoe, J T; Bennett, J; Petersen-Jones, S MGene therapy.2014 Oct;913-2025056608
Adeno-associated virus: fit to serve.Zinn, Eric; Vandenberghe, Luk HCurrent opinion in virology.2014 Oct;90-725128609
Biosynthesis of fungal indole alkaloids.Xu, Wei; Gavia, Diego J; Tang, YiNatural product reports.2014 Oct;1474-8725180619
Design and characterization of structured protein linkers with differing flexibilities.Klein, Joshua S; Jiang, Siduo; Galimidi, Rachel P; Keeffe, Jennifer R; Bjorkman, Pamela JProtein engineering, design & selection : PEDS.2014 Oct;325-3025301959
CRISPR-Cas9 knockin mice for genome editing and cancer modeling.Platt, Randall J; Chen, Sidi; Zhou, Yang; Yim, Michael J; Swiech, Lukasz; Kempton, Hannah R; Dahlman, James E; Parnas, Oren; Eisenhaure, Thomas M; Jovanovic, Marko; Graham, Daniel B; Jhunjhunwala, Siddharth; Heidenreich, Matthias; Xavier, Ramnik J; Langer, Robert; Anderson, Daniel G; Hacohen, Nir; Regev, Aviv; Feng, Guoping; Sharp, Phillip A; Zhang, FengCell.2014 Oct 9;440-5525263330
O-GlcNAc transferase enables AgRP neurons to suppress browning of white fat.Ruan, Hai-Bin; Dietrich, Marcelo O; Liu, Zhong-Wu; Zimmer, Marcelo R; Li, Min-Dian; Singh, Jay Prakash; Zhang, Kaisi; Yin, Ruonan; Wu, Jing; Horvath, Tamas L; Yang, XiaoyongCell.2014 Oct 9;306-1725303527
Computational design of a red fluorophore ligase for site-specific protein labeling in living cells.Liu, Daniel S; Nivon, Lucas G; Richter, Florian; Goldman, Peter J; Deerinck, Thomas J; Yao, Jennifer Z; Richardson, Douglas; Phipps, William S; Ye, Anne Z; Ellisman, Mark H; Drennan, Catherine L; Baker, David; Ting, Alice YProceedings of the National Academy of Sciences of the United States of America.2014 Oct 28;E4551-925313043
Cell intrinsic modulation of Wnt signaling controls neuroblast migration in C. elegans.Mentink, Remco A; Middelkoop, Teije C; Rella, Lorenzo; Ji, Ni; Tang, Chung Yin; Betist, Marco C; van Oudenaarden, Alexander; Korswagen, Hendrik CDevelopmental cell.2014 Oct 27;188-20125373777
Grueneisen relaxation photoacoustic microscopy.Wang, Lidai; Zhang, Chi; Wang, Lihong VPhysical review letters.2014 Oct 24;17430125379919
Identification of Orai1 channel inhibitors by using minimal functional domains to screen small molecule microarrays.Sadaghiani, Amir Masoud; Lee, Sang Min; Odegaard, Justin I; Leveson-Gower, Dennis B; McPherson, Olivia M; Novick, Paul; Kim, Mi Ri; Koehler, Angela N; Negrin, Robert; Dolmetsch, Ricardo E; Park, Chan YoungChemistry & biology.2014 Oct 23;1278-9225308275
Pupil fluctuations track fast switching of cortical states during quiet wakefulness.Reimer, Jacob; Froudarakis, Emmanouil; Cadwell, Cathryn R; Yatsenko, Dimitri; Denfield, George H; Tolias, Andreas SNeuron.2014 Oct 22;355-6225374359
Posttranscriptional regulation of gene expression by Piwi proteins and piRNAs.Watanabe, Toshiaki; Lin, HaifanMolecular cell.2014 Oct 2;18-2725280102
CRISPR-mediated direct mutation of cancer genes in the mouse liver.Xue, Wen; Chen, Sidi; Yin, Hao; Tammela, Tuomas; Papagiannakopoulos, Thales; Joshi, Nikhil S; Cai, Wenxin; Yang, Gillian; Bronson, Roderick; Crowley, Denise G; Zhang, Feng; Anderson, Daniel G; Sharp, Phillip A; Jacks, TylerNature.2014 Oct 16;380-425119044
CD39 and CD161 modulate Th17 responses in Crohn's disease.Bai, Aiping; Moss, Alan; Kokkotou, Efi; Usheva, Anny; Sun, Xiaofeng; Cheifetz, Adam; Zheng, Yi; Longhi, Maria Serena; Gao, Wenda; Wu, Yan; Robson, Simon CJournal of immunology (Baltimore, Md. : 1950).2014 Oct 1;3366-7725172498
Amplitude-masked photoacoustic wavefront shaping and application in flowmetry.Tay, Jian Wei; Liang, Jinyang; Wang, Lihong VOptics letters.2014 Oct 1;5499-50225360912
Visual predictions in the orbitofrontal cortex rely on associative content.Chaumon, Maximilien; Kveraga, Kestutis; Barrett, Lisa Feldman; Bar, MosheCerebral cortex (New York, N.Y. : 1991).2014 Nov;2899-90723771980
A comparison of propofol- and dexmedetomidine-induced electroencephalogram dynamics using spectral and coherence analysis.Akeju, Oluwaseun; Pavone, Kara J; Westover, M Brandon; Vazquez, Rafael; Prerau, Michael J; Harrell, Priscilla G; Hartnack, Katharine E; Rhee, James; Sampson, Aaron L; Habeeb, Kathleen; Gao, Lei; Lei, Gao; Pierce, Eric T; Walsh, John L; Brown, Emery N; Purdon, Patrick LAnesthesiology.2014 Nov;978-8925187999
Effects of sevoflurane and propofol on frontal electroencephalogram power and coherence.Akeju, Oluwaseun; Westover, M Brandon; Pavone, Kara J; Sampson, Aaron L; Hartnack, Katharine E; Brown, Emery N; Purdon, Patrick LAnesthesiology.2014 Nov;990-825233374
Drugging the undruggable RAS: Mission possible?Cox, Adrienne D; Fesik, Stephen W; Kimmelman, Alec C; Luo, Ji; Der, Channing JNature reviews. Drug discovery.2014 Nov;828-5125323927
Photoacoustic lymphatic imaging with high spatial-temporal resolution.Martel, Catherine; Yao, Junjie; Huang, Chih-Hsien; Zou, Jun; Randolph, Gwendalyn J; Wang, Lihong VJournal of biomedical optics.2014 Nov;11600925408958
Frequency-swept time-reversed ultrasonically encoded optical focusing.Suzuki, Yuta; Wang, Lihong VApplied physics letters.2014 Nov 10;19110825425744
Sex differences in the neural correlates of affective experience.Moriguchi, Yoshiya; Touroutoglou, Alexandra; Dickerson, Bradford C; Barrett, Lisa FeldmanSocial cognitive and affective neuroscience.2014 May;591-60023596188
Photoacoustic Brain Imaging: from Microscopic to Macroscopic Scales.Yao, Junjie; Wang, Lihong VNeurophotonics.2014 May 28;25401121
Global microRNA depletion suppresses tumor angiogenesis.Chen, Sidi; Xue, Yuan; Wu, Xuebing; Le, Cong; Bhutkar, Arjun; Bell, Eric L; Zhang, Feng; Langer, Robert; Sharp, Phillip AGenes & development.2014 May 15;1054-6724788094
Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis.Buckley, Peter T; Khaladkar, Mugdha; Kim, Junhyong; Eberwine, JamesWiley interdisciplinary reviews. RNA.2014 Mar-Apr;223-3024190870
Catheter-based photoacoustic endoscope.Yang, Joon-Mo; Li, Chiye; Chen, Ruimin; Zhou, Qifa; Shung, K Kirk; Wang, Lihong VJournal of biomedical optics.2014 Jun;6600124887743
Sensitivity of photoacoustic microscopy.Yao, Junjie; Wang, Lihong VPhotoacoustics.2014 Jun;87-10125302158
Development and applications of CRISPR-Cas9 for genome engineering.Hsu, Patrick D; Lander, Eric S; Zhang, FengCell.2014 Jun 5;1262-7824906146
Stimuli-Responsive Materials for Controlled Release of Theranostic Agents.Wang, Yucai; Shim, Min Suk; Levinson, Nathanael S; Sung, Hsing-Wen; Xia, YounanAdvanced functional materials.2014 Jul 16;4206-422025477774
Engineered red blood cells as carriers for systemic delivery of a wide array of functional probes.Shi, Jiahai; Kundrat, Lenka; Pishesha, Novalia; Bilate, Angelina; Theile, Chris; Maruyama, Takeshi; Dougan, Stephanie K; Ploegh, Hidde L; Lodish, Harvey FProceedings of the National Academy of Sciences of the United States of America.2014 Jul 15;10131-624982154
In vivo optically encoded photoacoustic flowgraphy.Zhang, Ruiying; Wang, Lidai; Yao, Junjie; Yeh, Cheng-Hung; Wang, Lihong VOptics letters.2014 Jul 1;3814-724978744
The mechanics of PLGA nanofiber scaffolds with biomimetic gradients in mineral for tendon-to-bone repair.Lipner, J; Liu, W; Liu, Y; Boyle, J; Genin, G M; Xia, Y; Thomopoulos, SJournal of the mechanical behavior of biomedical materials.2014 Dec;59-6825194525
A system for multilocus chromosomal integration and transformation-free selection marker rescue.Siddiqui, Michael S; Choksi, Atri; Smolke, Christina DFEMS yeast research.2014 Dec;1171-8525226817
Cell-based reporters reveal in vivo dynamics of dopamine and norepinephrine release in murine cortex.Muller, Arnaud; Joseph, Victory; Slesinger, Paul A; Kleinfeld, DavidNature methods.2014 Dec;1245-5225344639
Tunable protein degradation in bacteria.Cameron, D Ewen; Collins, James JNature biotechnology.2014 Dec;1276-8125402616
Time-reversed adapted-perturbation (TRAP) optical focusing onto dynamic objects inside scattering media.Ma, Cheng; Xu, Xiao; Liu, Yan; Wang, Lihong VNature photonics.2014 Dec;931-93625530797
Deconstructing transcriptional heterogeneity in pluripotent stem cells.Kumar, Roshan M; Cahan, Patrick; Shalek, Alex K; Satija, Rahul; DaleyKeyser, A Jay; Li, Hu; Zhang, Jin; Pardee, Keith; Gennert, David; Trombetta, John J; Ferrante, Thomas C; Regev, Aviv; Daley, George Q; Collins, James JNature.2014 Dec 4;56-6125471879
Single-shot compressed ultrafast photography at one hundred billion frames per second.Gao, Liang; Liang, Jinyang; Li, Chiye; Wang, Lihong VNature.2014 Dec 4;74-725471883
Novel synthetic medea selfish genetic elements drive population replacement in Drosophila; a theoretical exploration of medea-dependent population suppression.Akbari, Omar S; Chen, Chun-Hong; Marshall, John M; Huang, Haixia; Antoshechkin, Igor; Hay, Bruce AACS synthetic biology.2014 Dec 19;915-2823654248
Methylation-dependent acyl transfer between polyketide synthase and nonribosomal peptide synthetase modules in fungal natural product biosynthesis.Zou, Yi; Xu, Wei; Tsunematsu, Yuta; Tang, Mancheng; Watanabe, Kenji; Tang, YiOrganic letters.2014 Dec 19;6390-325494235
Promoter architecture dictates cell-to-cell variability in gene expression.Jones, Daniel L; Brewster, Robert C; Phillips, RobScience (New York, N.Y.).2014 Dec 19;1533-625525251
Scaling of gene expression with transcription-factor fugacity.Weinert, Franz M; Brewster, Robert C; Rydenfelt, Mattias; Phillips, Rob; Kegel, Willem KPhysical review letters.2014 Dec 19;25810125554908
High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies.Rabani, Michal; Raychowdhury, Raktima; Jovanovic, Marko; Rooney, Michael; Stumpo, Deborah J; Pauli, Andrea; Hacohen, Nir; Schier, Alexander F; Blackshear, Perry J; Friedman, Nir; Amit, Ido; Regev, AvivCell.2014 Dec 18;1698-71025497548
Joint cross-correlation analysis reveals complex, time-dependent functional relationship between cortical neurons and arm electromyograms.Zhuang, Katie Z; Lebedev, Mikhail A; Nicolelis, Miguel A LJournal of neurophysiology.2014 Dec 1;2865-8725210153
Protein capsules with cross-linked, semipermeable, and enzyme-degradable surface barriers for controlled release.Zhou, Jianhua; Hyun, Dong Choon; Liu, Hang; Wu, Hongkai; Xia, YounanMacromolecular rapid communications.2014 Aug;1436-4224957975
Improved vectors and genome-wide libraries for CRISPR screening.Sanjana, Neville E; Shalem, Ophir; Zhang, FengNature methods.2014 Aug;783-425075903
Label-free photoacoustic nanoscopy.Danielli, Amos; Maslov, Konstantin; Garcia-Uribe, Alejandro; Winkler, Amy M; Li, Chiye; Wang, Lidai; Chen, Yun; Dorn 2nd, Gerald W; Wang, Lihong VJournal of biomedical optics.2014 Aug;8600625104412
Microcirculatory changes identified by photoacoustic microscopy in patients with complex regional pain syndrome type I after stellate ganglion blocks.Zhou, Yong; Yi, Xiaobin; Xing, Wenxin; Hu, Song; Maslov, Konstantin I; Wang, Lihong VJournal of biomedical optics.2014 Aug;8601725144451
Reversibly switchable fluorescence microscopy with enhanced resolution and image contrast.Yao, Junjie; Shcherbakova, Daria M; Li, Chiye; Krumholz, Arie; Lorca, Ramon A; Reinl, Erin; England, Sarah K; Verkhusha, Vladislav V; Wang, Lihong VJournal of biomedical optics.2014 Aug;8601825144452
Improving the serum stability of site-specific antibody conjugates with sulfone linkers.Patterson, James T; Asano, Shigehiro; Li, Xiuling; Rader, Christoph; Barbas 3rd, Carlos FBioconjugate chemistry.2014 Aug 20;1402-725099687
Protein delivery using Cys2-His2 zinc-finger domains.Gaj, Thomas; Liu, Jia; Anderson, Kimberly E; Sirk, Shannon J; Barbas 3rd, Carlos FACS chemical biology.2014 Aug 15;1662-724936957
Somatic mutation as a mechanism of Wnt/*-catenin pathway activation in CLL.Wang, Lili; Shalek, Alex K; Lawrence, Mike; Ding, Ruihua; Gaublomme, Jellert T; Pochet, Nathalie; Stojanov, Petar; Sougnez, Carrie; Shukla, Sachet A; Stevenson, Kristen E; Zhang, Wandi; Wong, Jessica; Sievers, Quinlan L; MacDonald, Bryan T; Vartanov, Alexander R; Goldstein, Natalie R; Neuberg, Donna; He, Xi; Lander, Eric; Hacohen, Nir; Regev, Aviv; Getz, Gad; Brown, Jennifer R; Park, Hongkun; Wu, Catherine JBlood.2014 Aug 14;1089-9824778153
Verapamil, and its metabolite norverapamil, inhibit macrophage-induced, bacterial efflux pump-mediated tolerance to multiple anti-tubercular drugs.Adams, Kristin N; Szumowski, John D; Ramakrishnan, LalitaThe Journal of infectious diseases.2014 Aug 1;456-6624532601
A proteomic survey of widespread protein aggregation in yeast.O'Connell, Jeremy D; Tsechansky, Mark; Royall, Ariel; Boutz, Daniel R; Ellington, Andrew D; Marcotte, Edward MMolecular bioSystems.2014 Apr;851-6124488121
Breakthrough in Photonics 2013: Photoacoustic Tomography in Biomedicine.Yao, Junjie; Wang, Lihong VIEEE photonics journal.2014 Apr;25383143
Kinetic and equilibrium binding characterization of aptamers to small molecules using a label-free, sensitive, and scalable platform.Chang, Andrew L; McKeague, Maureen; Liang, Joe C; Smolke, Christina DAnalytical chemistry.2014 Apr 1;3273-824548121
Correction: Evolutionary principles of modular gene regulation in yeasts.Thompson, Dawn A; Roy, Sushmita; Chan, Michelle; Styczynski, Mark P; Pfiffner, Jenna; French, Courtney; Socha, Amanda; Thielke, Anne; Napolitano, Sara; Muller, Paul; Kellis, Manolis; Konieczka, Jay H; Wapinski, Ilan; Regev, AviveLife.2013;e0111423840936
Microbiota's 'little helpers': bacteriophages and antibiotic-associated responses in the gut microbiome.Sun, Christine L; Relman, David AGenome biology.2013;12723906048
Biophysical Modeling of Alpha Rhythms During Halothane-Induced Unconsciousness.Vijayan, Sujith; Ching, ShiNung; Purdon, Patrick L; Brown, Emery N; Kopell, Nancy JInternational IEEE/EMBS Conference on Neural Engineering : [proceedings]. International IEEE EMBS Conference on Neural Engineering.2013;1104-110725284633
Production of unnaturally linked chimeric proteins using a combination of sortase-catalyzed transpeptidation and click chemistry.Witte, Martin D; Theile, Christopher S; Wu, Tongfei; Guimaraes, Carla P; Blom, Annet E M; Ploegh, Hidde LNature protocols.2013 Sep;1808-1923989675
Ex vivo Expansion of Human Adult Pancreatic Cells with Properties of Distributed Stem Cells by Suppression of Asymmetric Cell Kinetics.Pare, Jf; Sherley, JlJournal of stem cell research & therapy.2013 Sep;14925197614
Mitochondrial dynamics controlled by mitofusins regulate Agrp neuronal activity and diet-induced obesity.Dietrich, Marcelo O; Liu, Zhong-Wu; Horvath, Tamas LCell.2013 Sep 26;188-9924074868
Maternal and offspring pools of osteocalcin influence brain development and functions.Oury, Franck; Khrimian, Lori; Denny, Christine A; Gardin, Antoine; Chamouni, Alexandre; Goeden, Nick; Huang, Yung-yu; Lee, Hojoon; Srinivas, Prashanth; Gao, Xiao-Bing; Suyama, Shigetomo; Langer, Thomas; Mann, John J; Horvath, Tamas L; Bonnin, Alexandre; Karsenty, GerardCell.2013 Sep 26;228-4124074871
Disruption of CEP290 microtubule/membrane-binding domains causes retinal degeneration.Drivas, Theodore G; Holzbaur, Erika L F; Bennett, JeanThe Journal of clinical investigation.2013 Oct;4525-3924051377
All-optical osteotomy to create windows for transcranial imaging in mice.Jeong, Diana C; Tsai, Philbert S; Kleinfeld, DavidOptics express.2013 Oct 7;23160-824104230
Optical sectioning by wide-field photobleaching imprinting microscopy.Li, Chiye; Gao, Liang; Liu, Yan; Wang, Lihong VApplied physics letters.2013 Oct 28;18370324273331
The challenge of connecting the dots in the B.R.A.I.N.Devor, Anna; Bandettini, Peter A; Boas, David A; Bower, James M; Buxton, Richard B; Cohen, Lawrence B; Dale, Anders M; Einevoll, Gaute T; Fox, Peter T; Franceschini, Maria Angela; Friston, Karl J; Fujimoto, James G; Geyer, Mark A; Greenberg, Joel H; Halgren, Eric; Hamalainen, Matti S; Helmchen, Fritjof; Hyman, Bradley T; Jasanoff, Alan; Jernigan, Terry L; Judd, Lewis L; Kim, Seong-Gi; Kleinfeld, David; Kopell, Nancy J; Kutas, Marta; Kwong, Kenneth K; Larkum, Matthew E; Lo, Eng H; Magistretti, Pierre J; Mandeville, Joseph B; Masliah, Eliezer; Mitra, Partha P; Mobley, William C; Moskowitz, Michael A; Nimmerjahn, Axel; Reynolds, John H; Rosen, Bruce R; Salzberg, Brian M; Schaffer, Chris B; Silva, Gabriel A; So, Peter T C; Spitzer, Nicholas C; Tootell, Roger B; Van Essen, David C; Vanduffel, Wim; Vinogradov, Sergei A; Wald, Lawrence L; Wang, Lihong V; Weber, Bruno; Yodh, Arjun GNeuron.2013 Oct 16;270-424139032
Elk-1 phosphorylated at threonine-417 is present in diverse cancers and correlates with differentiation grade of colonic adenocarcinoma.Morris, Jacqueline F; Sul, Jai-Yoon; Kim, Min-Sun; Klein-Szanto, Andres J; Schochet, Terri; Rustgi, Anil; Eberwine, James HHuman pathology.2013 May;766-7623114923
Intracellular temperature mapping with fluorescence-assisted photoacoustic-thermometry.Gao, Liang; Zhang, Chi; Li, Chiye; Wang, Lihong VApplied physics letters.2013 May 13;19370523825801
Retinal gene therapy coming of age.Cepko, Connie L; Vandenberghe, Luk HHuman gene therapy.2013 Mar;242-423458444
Directional interactions and cooperativity between mechanosensitive membrane proteins.Haselwandter, Christoph A; Phillips, RobEurophysics letters.2013 Mar;68002p1-68002p625309021
Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules.Roy, Sushmita; Wapinski, Ilan; Pfiffner, Jenna; French, Courtney; Socha, Amanda; Konieczka, Jay; Habib, Naomi; Kellis, Manolis; Thompson, Dawn; Regev, AvivGenome research.2013 Jun;1039-5023640720
Evaluation of the pathogenesis and treatment of Mycobacterium marinum infection in zebrafish.Takaki, Kevin; Davis, J Muse; Winglee, Kathryn; Ramakrishnan, LalitaNature protocols.2013 Jun;1114-2423680983
Short pathways to complexity generation: fungal peptidyl alkaloid multicyclic scaffolds from anthranilate building blocks.Walsh, Christopher T; Haynes, Stuart W; Ames, Brian D; Gao, Xue; Tang, YiACS chemical biology.2013 Jul 19;1366-8223659680
Restoration of the gut microbial habitat as a disease therapy.Relman, David ANature biotechnology.2013 Jan;35-723302933
Observation and characterization of the vestige of the jamming transition in a thermal three-dimensional system.Caswell, Thomas A; Zhang, Zexin; Gardel, Margaret L; Nagel, Sidney RPhysical review. E, Statistical, nonlinear, and soft matter physics.2013 Jan;1230323410327
Materials science: Synthetic polymers with biological rigidity.Gardel, Margaret LiseNature.2013 Jan 31;618-923354043
Microbiology. Undernutrition--looking within for answers.Relman, David AScience (New York, N.Y.).2013 Feb 1;530-223363770
Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes.Shekhar, Karthik; Ruberman, Claire F; Ferguson, Andrew L; Barton, John P; Kardar, Mehran; Chakraborty, Arup KPhysical review. E, Statistical, nonlinear, and soft matter physics.2013 Dec;6270524483484
Structured-illumination photoacoustic Doppler flowmetry of axial flow in homogeneous scattering media.Zhang, Ruiying; Yao, Junjie; Maslov, Konstantin I; Wang, Lihong VApplied physics letters.2013 Aug 26;9410124065864
The tower of Babel: survey on concepts and terminology in electrical status epilepticus in sleep and continuous spikes and waves during sleep in North America.Fernandez, Ivan Sanchez; Chapman, Kevin E; Peters, Jurriaan M; Kothare, Sanjeev V; Nordli Jr, Douglas R; Jensen, Frances E; Berg, Anne T; Loddenkemper, TobiasEpilepsia.2013 Apr;741-5023163318
Slow-sound photoacoustic microscopy.Zhang, Chi; Zhou, Yong; Li, Chiye; Wang, Lihong VApplied physics letters.2013 Apr 22;16370223696693
A functional selection model explains evolutionary robustness despite plasticity in regulatory networks.Habib, Naomi; Wapinski, Ilan; Margalit, Hanah; Regev, Aviv; Friedman, NirMolecular systems biology.2012;61923089682
Controlling interneuron activity in Caenorhabditis elegans to evoke chemotactic behaviour.Kocabas, Askin; Shen, Ching-Han; Guo, Zengcai V; Ramanathan, SharadNature.2012 Oct 11;273-723000898
Controlling airborne cues to study small animal navigation.Gershow, Marc; Berck, Matthew; Mathew, Dennis; Luo, Linjiao; Kane, Elizabeth A; Carlson, John R; Samuel, Aravinthan D TNature methods.2012 Mar;290-622245808
Authorsýýý response: what are emotions and how are they created in the brain?Lindquist, Kristen A; Wager, Tor D; Bliss-Moreau, Eliza; Kober, Hedy; Barret, Lisa FeldmanThe Behavioral and brain sciences.2012 Jun;172-20222783560
Contractile units in disordered actomyosin bundles arise from F-actin buckling.Lenz, Martin; Thoresen, Todd; Gardel, Margaret L; Dinner, Aaron RPhysical review letters.2012 Jun 8;23810723003998
Using a low denaturant model to explore the conformational features of translocation-active SecA.Maki, Jenny L; Krishnan, Beena; Gierasch, Lila MBiochemistry.2012 Feb 21;1369-7922304380
Strain-specific differences in perinatal rodent oligodendrocyte lineage progression and its correlation with human.Dean, Justin M; Moravec, Matthew D; Grafe, Marjorie; Abend, Nicholas; Ren, Jennifer; Gong, Xi; Volpe, Joseph J; Jensen, Frances E; Hohimer, A Roger; Back, Stephen ADevelopmental neuroscience.2011;251-6021865655
Spatiotemporal control of embryonic gene expression using caged morpholinos.Shestopalov, Ilya A; Chen, James KMethods in cell biology.2011;151-7221924162
The clinically available NMDA receptor antagonist, memantine, exhibits relative safety in the developing rat brain.Manning, Simon M; Boll, Griffin; Fitzgerald, Erin; Selip, Debra B; Volpe, Joseph J; Jensen, Frances EInternational journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience.2011 Nov;767-7321624454
A career pathway in protein folding: from model peptides to postreductionist protein science.Gierasch, Lila MProtein science : a publication of the Protein Society.2011 May;783-9021404361
A ''window of opportunity:'' the reduction of coronary heart disease and total mortality with menopausal therapies is age- and time-dependent.Hodis, Howard N; Mack, Wendy JBrain research.2011 Mar 16;244-5220977895
The developing oligodendrocyte: key cellular target in brain injury in the premature infant.Volpe, Joseph J; Kinney, Hannah C; Jensen, Frances E; Rosenberg, Paul AInternational journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience.2011 Jun;423-4021382469
Quality metrics to accompany spike sorting of extracellular signals.Hill, Daniel N; Mehta, Samar B; Kleinfeld, DavidThe Journal of neuroscience : the official journal of the Society for Neuroscience.2011 Jun 15;8699-70521677152
Whole-genome molecular haplotyping of single cells.Fan, H Christina; Wang, Jianbin; Potanina, Anastasia; Quake, Stephen RNature biotechnology.2011 Jan;51-721170043
Genetics. Systems genetics.Nadeau, Joseph H; Dudley, Aimee MScience (New York, N.Y.).2011 Feb 25;1015-621350153
Using iPSC-derived neurons to uncover cellular phenotypes associated with Timothy syndrome.Pasca, Sergiu P; Portmann, Thomas; Voineagu, Irina; Yazawa, Masayuki; Shcheglovitov, Aleksandr; Pasca, Anca M; Cord, Branden; Palmer, Theo D; Chikahisa, Sachiko; Nishino, Seiji; Bernstein, Jonathan A; Hallmayer, Joachim; Geschwind, Daniel H; Dolmetsch, Ricardo ENature medicine.2011 Dec;1657-6222120178
Interaction of streptavidin-based peptide-MHC oligomers (tetramers) with cell-surface TCRs.Stone, Jennifer D; Artyomov, Maxim N; Chervin, Adam S; Chakraborty, Arup K; Eisen, Herman N; Kranz, David MJournal of immunology (Baltimore, Md. : 1950).2011 Dec 15;6281-9022102724
Automatic identification of fluorescently labeled brain cells for rapid functional imaging.Valmianski, Ilya; Shih, Andy Y; Driscoll, Jonathan D; Matthews, David W; Freund, Yoav; Kleinfeld, DavidJournal of neurophysiology.2010 Sep;1803-1120610792
I Like the Sound of Your Voice: Affective Learning about Vocal Signals.Bliss-Moreau, Eliza; Barrett, Lisa Feldman; Owren, Michael JJournal of experimental social psychology.2010 May 1;557-56320495619
Analytical approaches to RNA profiling data for the identification of genes enriched in specific cells.Dougherty, Joseph D; Schmidt, Eric F; Nakajima, Miho; Heintz, NathanielNucleic acids research.2010 Jul;4218-3020308160
Chronic optical access through a polished and reinforced thinned skull.Drew, Patrick J; Shih, Andy Y; Driscoll, Jonathan D; Knutsen, Per Magne; Blinder, Pablo; Davalos, Dimitrios; Akassoglou, Katerina; Tsai, Philbert S; Kleinfeld, DavidNature methods.2010 Dec;981-420966916
Transgenerational genetic effects of the paternal Y chromosome on daughters' phenotypes.Nelson, Vicki R; Spiezio, Sabrina H; Nadeau, Joseph HEpigenomics.2010 Aug;513-2122121971
Affect as a Psychological Primitive.Barrett, Lisa Feldman; Bliss-Moreau, ElizaAdvances in experimental social psychology.2009;167-21820552040
Inversion of product selectivity in an enzyme-inspired metallosupramolecular tweezer catalyzed epoxidation reaction.Ulmann, Pirmin A; Braunschweig, Adam B; Lee, One-Sun; Wiester, Michael J; Schatz, George C; Mirkin, Chad AChemical communications (Cambridge, England).2009 Sep 14;5121-320448966
Induction of protein-protein interactions in live cells using light.Yazawa, Masayuki; Sadaghiani, Amir M; Hsueh, Brian; Dolmetsch, Ricardo ENature biotechnology.2009 Oct;941-519801976
Reconstructing the Past: A Century of Ideas About Emotion in Psychology.Gendron, Maria; Barrett, Lisa FeldmanEmotion review : journal of the International Society for Research on Emotion.2009 Oct 1;316-33920221412
Variety is the spice of life: A psychological construction approach to understanding variability in emotion.Barrett, Lisa FeldmanCognition & emotion.2009 Nov 1;1284-130620221411
Flexible electrical recording from cells using nanowire transistor arrays.Cohen-Karni, Tzahi; Timko, Brian P; Weiss, Lucien E; Lieber, Charles MProceedings of the National Academy of Sciences of the United States of America.2009 May 5;7309-1319365078
Just-so Stories: Vaccines, Autism, and the Single-bullet Disorder.Bearman, PeterSocial psychology quarterly.2009 Jun;112-11520721312
Effects of recombinant protein expression on green fluorescent protein diffusion in Escherichia coli.Slade, Kristin M; Baker, Rachael; Chua, Michael; Thompson, Nancy L; Pielak, Gary JBiochemistry.2009 Jun 16;5083-919413350
Plasmonic focusing in rod-sheath heteronanostructures.Chen, Xiaodong; Li, Shuzhou; Xue, Can; Banholzer, Matthew J; Schatz, George C; Mirkin, Chad AACS nano.2009 Jan 27;87-9219206253
The neural basis of visual behaviors in the larval zebrafish.Portugues, Ruben; Engert, FlorianCurrent opinion in neurobiology.2009 Dec;644-719896836
Core-shell triangular bifrustums.Yoo, Hyojong; Millstone, Jill E; Li, Shuzhou; Jang, Jae-Won; Wei, Wei; Wu, Jinsong; Schatz, George C; Mirkin, Chad ANano letters.2009 Aug;3038-4119603815
An Electrochemical Approach to and the Physical Consequences of Preparing Nanostructures from Gold Nanorods with Smooth Ends.Banholzer, Matthew J; Li, Shuzhou; Ketter, Jacob B; Rozkiewicz, Dorota I; Schatz, George C; Mirkin, Chad AThe journal of physical chemistry. C, Nanomaterials and interfaces.2008 Oct 9;15729-1573422180788
Development of the human infant intestinal microbiota.Palmer, Chana; Bik, Elisabeth M; DiGiulio, Daniel B; Relman, David A; Brown, Patrick OPLoS biology.2007 Jul;e17717594176
Stochastic protein expression in individual cells at the single molecule level.Cai, Long; Friedman, Nir; Xie, X SunneyNature.2006 Mar 16;358-6216541077
Calculation of electrostatic effects at the amino terminus of an alpha helix.Sitkoff, D; Lockhart, D J; Sharp, K A; Honig, BBiophysical journal.1994 Dec;2251-607696466
Synthetic zinc finger proteins: the advent of targeted gene regulation and genome modification technologies.Gersbach, Charles A; Gaj, Thomas; Barbas 3rd, Carlos FAccounts of chemical research.2014 Aug 19;2309-1824877793
Near-infrared optical-resolution photoacoustic microscopy.Hai, Pengfei; Yao, Junjie; Maslov, Konstantin I; Zhou, Yong; Wang, Lihong VOptics letters2014 Sep 15192-525166107
Processing properties of ON and OFF pathways for Drosophila motion detection.Behnia, Rudy; Clark, Damon A; Carter, Adam G; Clandinin, Thomas R; Desplan, ClaudeNature2014 Aug 28427-3025043016
A microbial biomanufacturing platform for natural and semisynthetic opioids.Thodey, Kate; Galanie, Stephanie; Smolke, Christina DNature chemical biology2014 Aug 24NULL25151135
**T Cell Receptors Expressed by CD4(-)CD8**(-) Intraepithelial T Cells Drive Their Fate into a Unique Lineage with Unusual MHC Reactivities.Mayans, Sofia; Stepniak, Dariusz; Palida, Sakina F; Larange, Alexandre; Dreux, Joanna; Arlian, Britni M; Shinnakasu, Ryo; Kronenberg, Mitchell; Cheroutre, Hilde; Lambolez, FlorenceImmunity2014 Aug 21207-1825131531
Sensory Integration in Mouse Insular Cortex Reflects GABA Circuit Maturation.Gogolla, Nadine; Takesian, Anne E; Feng, Guoping; Fagiolini, Michela; Hensch, Takao KNeuron2014 Aug 20894-90525088363
Handheld photoacoustic microscopy to detect melanoma depth in vivo.Zhou, Yong; Xing, Wenxin; Maslov, Konstantin I; Cornelius, Lynn A; Wang, Lihong VOptics letters2014 Aug 154731-425121860
Neural control and modulation of swimming speed in the larval zebrafish.Severi, Kristen E; Portugues, Ruben; Marques, Joao C; O'Malley, Donald M; Orger, Michael B; Engert, FlorianNeuron2014 Aug 6692-70725066084
Promising and delivering gene therapies for vision loss.Carvalho, Livia S; Vandenberghe, Luk HVision research2014 Aug 2NULL25094052
Activation and measurement of free whisking in the lightly anesthetized rodent.Moore, Jeffrey D; Deschenes, Martin; Kurnikova, Anastasia; Kleinfeld, DavidNature protocols2014 Aug1792-80224992095
A freely-moving monkey treadmill model.D Foster, Justin; Nuyujukian, Paul; Freifeld, Oren; Gao, Hua; Walker, Ross; I Ryu, Stephen; H Meng, Teresa; Murmann, Boris; J Black, Michael; V Shenoy, KrishnaJournal of neural engineering2014 Aug4602024995476
DNA methylation dynamics of the human preimplantation embryo.Smith, Zachary D; Chan, Michelle M; Humm, Kathryn C; Karnik, Rahul; Mekhoubad, Shila; Regev, Aviv; Eggan, Kevin; Meissner, AlexanderNature2014 Jul 31611-525079558
H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency.Benayoun, Berenice A; Pollina, Elizabeth A; Ucar, Duygu; Mahmoudi, Salah; Karra, Kalpana; Wong, Edith D; Devarajan, Keerthana; Daugherty, Aaron C; Kundaje, Anshul B; Mancini, Elena; Hitz, Benjamin C; Gupta, Rakhi; Rando, Thomas A; Baker, Julie C; Snyder, Cell2014 Jul 31673-8825083876
Three-dimensional arbitrary trajectory scanning photoacoustic microscopy.Yeh, Chenghung; Soetikno, Brian; Hu, Song; Maslov, Konstantin I; Wang, Lihong VJournal of biophotonics2014 Jul 30NULL25077689
Proteomic mapping of the human mitochondrial intermembrane space in live cells via ratiometric APEX tagging.Hung, Victoria; Zou, Peng; Rhee, Hyun-Woo; Udeshi, Namrata D; Cracan, Valentin; Svinkina, Tanya; Carr, Steven A; Mootha, Vamsi K; Ting, Alice YMolecular cell2014 Jul 17332-4125002142
Mechanism of transcriptional bursting in bacteria.Chong, Shasha; Chen, Chongyi; Ge, Hao; Xie, X SunneyCell2014 Jul 17314-2625036631
Photoacoustic microscopy and computed tomography: from bench to bedside.Wang, Lihong V; Gao, LiangAnnual review of biomedical engineering2014 Jul 11155-8524905877
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites.Schwartz, Schraga; Mumbach, Maxwell R; Jovanovic, Marko; Wang, Tim; Maciag, Karolina; Bushkin, G Guy; Mertins, Philipp; Ter-Ovanesyan, Dmitry; Habib, Naomi; Cacchiarelli, Davide; Sanjana, Neville E; Freinkman, Elizaveta; Pacold, Michael E; Satija, Rahul; Cell reports2014 Jul 10284-9624981863
Resident fibroblast lineages mediate pressure overload-induced cardiac fibrosis.Moore-Morris, Thomas; Guimaraes-Camboa, Nuno; Banerjee, Indroneal; Zambon, Alexander C; Kisseleva, Tatiana; Velayoudon, Aurelie; Stallcup, William B; Gu, Yusu; Dalton, Nancy D; Cedenilla, Marta; Gomez-Amaro, Rafael; Zhou, Bin; Brenner, David A; Peterson, The Journal of clinical investigation2014 Jul 12921-3424937432
Oncogenic transformation of diverse gastrointestinal tissues in primary organoid culture.Li, Xingnan; Nadauld, Lincoln; Ootani, Akifumi; Corney, David C; Pai, Reetesh K; Gevaert, Olivier; Cantrell, Michael A; Rack, Paul G; Neal, James T; Chan, Carol W-M; Yeung, Trevor; Gong, Xue; Yuan, Jenny; Wilhelmy, Julie; Robine, Sylvie; Attardi, Laura D;Nature medicine2014 Jul769-7724859528
Leptin signaling in astrocytes regulates hypothalamic neuronal circuits and feeding.Kim, Jae Geun; Suyama, Shigetomo; Koch, Marco; Jin, Sungho; Argente-Arizon, Pilar; Argente, Jesus; Liu, Zhong-Wu; Zimmer, Marcelo R; Jeong, Jin Kwon; Szigeti-Buck, Klara; Gao, Yuanqing; Garcia-Caceres, Cristina; Yi, Chun-Xia; Salmaso, Natalina; Vaccarino,Nature neuroscience2014 Jul908-1024880214
CANDO and the infinite drug discovery frontier.Minie, Mark; Chopra, Gaurav; Sethi, Geetika; Horst, Jeremy; White, George; Roy, Ambrish; Hatti, Kaushik; Samudrala, RamDrug discovery today2014 Jun 26NULL24980786
Nerve guidance conduits based on double-layered scaffolds of electrospun nanofibers for repairing the peripheral nervous system.Xie, Jingwei; MacEwan, Matthew R; Liu, Wenying; Jesuraj, Nithya; Li, Xiaoran; Hunter, Daniel; Xia, YounanACS applied materials & interfaces2014 Jun 259472-8024806389
Optical-Resolution Photoacoustic Microscopy for Volumetric and Spectral Analysis of Histological and Immunochemical Samples.Zhang, Yu Shrike; Yao, Junjie; Zhang, Chi; Li, Lei; Wang, Lihong V; Xia, YounanAngewandte Chemie (International ed. in English)2014 Jun 24NULL24961608
Aggregate-prone R120GCRYAB triggers multifaceted modifications of the thioredoxin system.Banerjee Mustafi, Soumyajit; Grose, Julianne H; Zhang, Huali; Pratt, Gregory W; Sadoshima, Junichi; Christians, Elisabeth S; Benjamin, Ivor JAntioxidants & redox signaling2014 Jun 202891-90624180415
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.Shalek, Alex K; Satija, Rahul; Shuga, Joe; Trombetta, John J; Gennert, Dave; Lu, Diana; Chen, Peilin; Gertner, Rona S; Gaublomme, Jellert T; Yosef, Nir; Schwartz, Schraga; Fowler, Brian; Weaver, Suzanne; Wang, Jing; Wang, Xiaohui; Ding, Ruihua; RaychowdhuNature2014 Jun 19363-924919153
Genome-wide identification and functional analysis of Apobec-1 mediated C-to-U RNA editing in mouse small intestine and liver.Blanc, Valerie; Park, Eddie; Schaefer, Sabine; Miller, Melanie; Lin, Yiing; Kennedy, Susan; Billing, Anja M; Ben Hamidane, Hisham; Graumann, Johannes; Mortazavi, Ali; Nadeau, Joseph H; Davidson, Nicholas OGenome biology2014 Jun 19R7924946870
High-sensitivity measurements of multiple kinase activities in live single cells.Regot, Sergi; Hughey, Jacob J; Bajar, Bryce T; Carrasco, Silvia; Covert, Markus WCell2014 Jun 191724-3424949979
fast_protein_cluster: parallel and optimized clustering of large-scale protein modeling data.Hung, Ling-Hong; Samudrala, RamBioinformatics (Oxford, England)2014 Jun 151774-624532722
Continuous scanning of a time-reversed ultrasonically encoded optical focus by reflection-mode digital phase conjugation.Suzuki, Yuta; Tay, Jian Wei; Yang, Qiang; Wang, Lihong VOptics letters2014 Jun 153441-424978506
Shh-proteoglycan interactions regulate maturation of olfactory glomerular circuitry.Persson, Laura; Witt, Rochelle M; Galligan, Meghan; Greer, Paul L; Eisner, Adriana; Pazyra-Murphy, Maria F; Datta, Sandeep R; Segal, Rosalind ADevelopmental neurobiology2014 Jun 10NULL24913191
Pathways Disrupted in Human ALS Motor Neurons Identified through Genetic Correction of Mutant SOD1.Kiskinis, Evangelos; Sandoe, Jackson; Williams, Luis A; Boulting, Gabriella L; Moccia, Rob; Wainger, Brian J; Han, Steve; Peng, Theodore; Thams, Sebastian; Mikkilineni, Shravani; Mellin, Cassidy; Merkle, Florian T; Davis-Dusenbery, Brandi N; Ziller, MichaCell stem cell2014 Jun 5781-9524704492
Eosinophils and type 2 cytokine signaling in macrophages orchestrate development of functional beige fat.Qiu, Yifu; Nguyen, Khoa D; Odegaard, Justin I; Cui, Xiaojin; Tian, Xiaoyu; Locksley, Richard M; Palmiter, Richard D; Chawla, AjayCell2014 Jun 51292-30824906148
Measuring Fate and Rate of Single-Molecule Competition of Amplification and Restriction Digestion, and Its Use for Rapid Genotyping Tested with Hepatitis C Viral RNA.Sun, Bing; Rodriguez-Manzano, Jesus; Selck, David A; Khorosheva, Eugenia; Karymov, Mikhail A; Ismagilov, Rustem FAngewandte Chemie (International ed. in English)2014 Jun 2NULL24889060
Genomics: moving behavioural ecology beyond the phenotypic gambit.Rittschof, Clare C; Robinson, Gene EAnimal behaviour2014 Jun 1263-27024954950
Minireview: Metabolism of female reproduction: regulatory mechanisms and clinical implications.Seli, Emre; Babayev, Elnur; Collins, Stephen C; Nemeth, Gabor; Horvath, Tamas LMolecular endocrinology (Baltimore, Md.)2014 Jun790-80424678733
Population code in mouse V1 facilitates readout of natural scenes through increased sparseness.Froudarakis, Emmanouil; Berens, Philipp; Ecker, Alexander S; Cotton, R James; Sinz, Fabian H; Yatsenko, Dimitri; Saggau, Peter; Bethge, Matthias; Tolias, Andreas SNature neuroscience2014 Jun851-724747577
Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing.Tsai, Shengdar Q; Wyvekens, Nicolas; Khayter, Cyd; Foden, Jennifer A; Thapar, Vishal; Reyon, Deepak; Goodwin, Mathew J; Aryee, Martin J; Joung, J KeithNature biotechnology2014 Jun569-7624770325
Chronic, wireless recordings of large-scale brain activity in freely moving rhesus monkeys.Schwarz, David A; Lebedev, Mikhail A; Hanson, Timothy L; Dimitrov, Dragan F; Lehew, Gary; Meloy, Jim; Rajangam, Sankaranarayani; Subramanian, Vivek; Ifft, Peter J; Li, Zheng; Ramakrishnan, Arjun; Tate, Andrew; Zhuang, Katie Z; Nicolelis, Miguel A LNature methods2014 Jun670-624776634
Walking Drosophila align with the e-vector of linearly polarized light through directed modulation of angular acceleration.Velez, Mariel M; Wernet, Mathias F; Clark, Damon A; Clandinin, Thomas RJournal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology2014 Jun603-1424810784
The cultural evolution of emergent group-level traits.Smaldino, Paul EThe Behavioral and brain sciences2014 Jun243-5424970399
Fungal Polyketide Synthase Product Chain-Length Control by Partnering Thiohydrolase.Zabala, Angelica O; Chooi, Yit-Heng; Choi, Moon Seok; Lin, Hsiao-Ching; Tang, YiACS chemical biology2014 May 29NULL24845309
Oncogenic transformation of diverse gastrointestinal tissues in primary organoid culture.Li, Xingnan; Nadauld, Lincoln; Ootani, Akifumi; Corney, David C; Pai, Reetesh K; Gevaert, Olivier; Cantrell, Michael A; Rack, Paul G; Neal, James T; Chan, Carol W-M; Yeung, Trevor; Gong, Xue; Yuan, Jenny; Wilhelmy, Julie; Robine, Sylvie; Attardi, Laura D;Nature medicine2014 May 25NULL24859528
Proteomic identification of monoclonal antibodies from serum.Boutz, Daniel R; Horton, Andrew P; Wine, Yariv; Lavinder, Jason J; Georgiou, George; Marcotte, Edward MAnalytical chemistry2014 May 204758-6624684310
Antibiotics induce redox-related physiological alterations as part of their lethality.Dwyer, Daniel J; Belenky, Peter A; Yang, Jason H; MacDonald, I Cody; Martell, Jeffrey D; Takahashi, Noriko; Chan, Clement T Y; Lobritz, Michael A; Braff, Dana; Schwarz, Eric G; Ye, Jonathan D; Pati, Mekhala; Vercruysse, Maarten; Ralifo, Paul S; Allison, KProceedings of the National Academy of Sciences of the United States of America2014 May 20E2100-924803433
A carbonate-forming Baeyer-Villiger monooxygenase.Hu, Youcai; Dietrich, David; Xu, Wei; Patel, Ashay; Thuss, Justin A J; Wang, Jingjing; Yin, Wen-Bing; Qiao, Kangjian; Houk, K N; Vederas, John C; Tang, YiNature chemical biology2014 May 18NULL24838010
Improved in vitro efficacy of gold nanoconstructs by increased loading of G-quadruplex aptamer.Dam, Duncan Hieu M; Lee, Raymond C; Odom, Teri WNano letters2014 May 142843-824689438
Constant growth rate can be supported by decreasing energy flux and increasing aerobic glycolysis.Slavov, Nikolai; Budnik, Bogdan A; Schwab, David; Airoldi, Edoardo M; van Oudenaarden, AlexanderCell reports2014 May 8705-1424767987
Loss of *-catenin triggers oxidative stress and impairs hematopoietic regeneration.Lento, William; Ito, Takahiro; Zhao, Chen; Harris, Jeffrey R; Huang, Wei; Jiang, Chen; Owzar, Kouros; Piryani, Sadhna; Racioppi, Luigi; Chao, Nelson; Reya, TannishthaGenes & development2014 May 1995-100424788518
Lestaurtinib (CEP-701) attenuates "second hit" kainic acid-induced seizures following early life hypoxic seizures.Obeid, Makram; Rosenberg, Evan C; Klein, Peter M; Jensen, Frances EEpilepsy research2014 May806-1024582454
Cross-linking in the silks of bees, ants and hornets.Campbell, Peter M; Trueman, Holly E; Zhang, Qiang; Kojima, Katsura; Kameda, Tsunenori; Sutherland, Tara DInsect biochemistry and molecular biology2014 May40-5024607851
Subunit composition of glutamate and gamma-aminobutyric acid receptors in status epilepticus.Loddenkemper, Tobias; Talos, Delia M; Cleary, Ryan T; Joseph, Annelise; Sanchez Fernandez, Ivan; Alexopoulos, Andreas; Kotagal, Prakash; Najm, Imad; Jensen, Frances EEpilepsy research2014 May605-1524613745
Signaling by IL-6 promotes alternative activation of macrophages to limit endotoxemia and obesity-associated resistance to insulin.Mauer, Jan; Chaurasia, Bhagirath; Goldau, Julia; Vogt, Merly C; Ruud, Johan; Nguyen, Khoa D; Theurich, Sebastian; Hausen, A Christine; Schmitz, Joel; Bronneke, Hella S; Estevez, Emma; Allen, Tamara L; Mesaros, Andrea; Partridge, Linda; Febbraio, Mark A; CNature immunology2014 May423-3024681566
Transcriptional profiling of cells sorted by RNA abundance.Klemm, Sandy; Semrau, Stefan; Wiebrands, Kay; Mooijman, Dylan; Faddah, Dina A; Jaenisch, Rudolf; van Oudenaarden, AlexanderNature methods2014 May549-5124681693
Chaperones and cardiac misfolding protein diseases.Christians, Elisabeth S; Mustafi, Soumyajit B; Benjamin, Ivor JCurrent protein & peptide science2014 May189-20424694370
Gender moderates the effect of oxytocin on social judgments.Hoge, Elizabeth A; Anderson, Eric; Lawson, Elizabeth A; Bui, Eric; Fischer, Laura E; Khadge, Shradha D; Barrett, Lisa Feldman; Simon, Naomi MHuman psychopharmacology2014 May299-30424911580
Statistical modeling of behavioral dynamics during propofol-induced loss of consciousness.Wong, Kin Foon Kevin; Smith, Anne C; Pierce, Eric T; Harrell, P Grace; Walsh, John L; Salazar-Gomez, Andres Felipe; Tavares, Casie L; Purdon, Patrick L; Brown, Emery NJournal of neuroscience methods2014 Apr 3065-7424530701
Inter-individual variation in DNA repair capacity: A need for multi-pathway functional assays to promote translational DNA repair research.Nagel, Zachary D; Chaim, Isaac A; Samson, Leona DDNA repair2014 Apr 26NULL24780560
Gender differences in oxytocin-associated disruption of decision bias during emotion perception.Lynn, Spencer K; Hoge, Elizabeth A; Fischer, Laura E; Barrett, Lisa Feldman; Simon, Naomi MPsychiatry research2014 Apr 26NULL24814142
Vasoactive intestinal polypeptide mediates circadian rhythms in mammalian olfactory bulb and olfaction.Miller, Jae-Eun Kang; Granados-Fuentes, Daniel; Wang, Thomas; Marpegan, Luciano; Holy, Timothy E; Herzog, Erik DThe Journal of neuroscience : the official journal of the Society for Neuroscience2014 Apr 236040-624760863
Plasmonics-enhanced and optically modulated delivery of gold nanostars into brain tumor.Yuan, Hsiangkuo; Wilson, Christy M; Xia, Jun; Doyle, Sarah L; Li, Shuqin; Fales, Andrew M; Liu, Yang; Ozaki, Ema; Mulfaul, Kelly; Hanna, Gabi; Palmer, Gregory M; Wang, Lihong V; Grant, Gerald A; Vo-Dinh, TuanNanoscale2014 Apr 214078-8224619405
Protein-to-mRNA Ratios Are Conserved between Pseudomonas aeruginosa Strains.Kwon, Taejoon; Huse, Holly K; Vogel, Christine; Whiteley, Marvin; Marcotte, Edward MJournal of proteome research2014 Apr 17NULL24742327
Small-molecule RORýýt antagonists inhibit T helper 17 cell transcriptional network by divergent mechanisms.Xiao, Sheng; Yosef, Nir; Yang, Jianfei; Wang, Yonghui; Zhou, Ling; Zhu, Chen; Wu, Chuan; Baloglu, Erkan; Schmidt, Darby; Ramesh, Radha; Lobera, Mercedes; Sundrud, Mark S; Tsai, Pei-Yun; Xiang, Zhijun; Wang, Jinsong; Xu, Yan; Lin, Xichen; Kretschmer, KarstImmunity2014 Apr 17477-8924745332
Representing sex in the brain, one module at a time.Yang, Cindy F; Shah, Nirao MNeuron2014 Apr 16261-7824742456
Emerging applications of phase-change materials (PCMs): teaching an old dog new tricks.Hyun, Dong Choon; Levinson, Nathanael S; Jeong, Unyong; Xia, YounanAngewandte Chemie (International ed. in English)2014 Apr 73780-9524470287
Nonlinear light-sheet fluorescence microscopy by photobleaching imprinting.Gao, Liang; Zhu, Liren; Li, Chiye; Wang, Lihong VJournal of the Royal Society, Interface / the Royal Society2014 Apr 62013085124478278
Enhancing the specificity of recombinase-mediated genome engineering through dimer interface redesign.Gaj, Thomas; Sirk, Shannon J; Tingle, Ryan D; Mercer, Andrew C; Wallen, Mark C; Barbas 3rd, Carlos FJournal of the American Chemical Society2014 Apr 25047-5624611715
State dependence of noise correlations in macaque primary visual cortex.Ecker, Alexander S; Berens, Philipp; Cotton, R James; Subramaniyan, Manivannan; Denfield, George H; Cadwell, Cathryn R; Smirnakis, Stelios M; Bethge, Matthias; Tolias, Andreas SNeuron2014 Apr 2235-4824698278
Expanding the zinc-finger recombinase repertoire: directed evolution and mutational analysis of serine recombinase specificity determinants.Sirk, Shannon J; Gaj, Thomas; Jonsson, Andreas; Mercer, Andrew C; Barbas 3rd, Carlos FNucleic acids research2014 Apr 14755-6624452803
Fully motorized optical-resolution photoacoustic microscopy.Li, Lei; Yeh, Chenghung; Hu, Song; Wang, Lidai; Soetikno, Brian T; Chen, Ruimin; Zhou, Qifa; Shung, K Kirk; Maslov, Konstantin I; Wang, Lihong VOptics letters2014 Apr 12117-2024686689
Atrophy in distinct corticolimbic networks in frontotemporal dementia relates to social impairments measured using the Social Impairment Rating Scale.Bickart, Kevin C; Brickhouse, Michael; Negreira, Alyson; Sapolsky, Daisy; Barrett, Lisa Feldman; Dickerson, Bradford CJournal of neurology, neurosurgery, and psychiatry2014 Apr438-4824133285
Modeling the dynamical effects of anesthesia on brain circuits.Ching, Shinung; Brown, Emery NCurrent opinion in neurobiology2014 Apr116-2224457211
Self-recalibrating classifiers for intracortical brain-computer interfaces.Bishop, William; Chestek, Cynthia C; Gilja, Vikash; Nuyujukian, Paul; Foster, Justin D; Ryu, Stephen I; Shenoy, Krishna V; Yu, Byron MJournal of neural engineering2014 Apr2600124503597
Neural circuits as computational dynamical systems.Sussillo, DavidCurrent opinion in neurobiology2014 Apr156-6324509098
Emotion perception, but not affect perception, is impaired with semantic memory loss.Lindquist, Kristen A; Gendron, Maria; Barrett, Lisa Feldman; Dickerson, Bradford CEmotion (Washington, D.C.)2014 Apr375-8724512242
Broad specificity profiling of TALENs results in engineered nucleases with improved DNA-cleavage specificity.Guilinger, John P; Pattanayak, Vikram; Reyon, Deepak; Tsai, Shengdar Q; Sander, Jeffry D; Joung, J Keith; Liu, David RNature methods2014 Apr429-3524531420
CRISPR-Cas systems for editing, regulating and targeting genomes.Sander, Jeffry D; Joung, J KeithNature biotechnology2014 Apr347-5524584096
Recasting the theory of mosquito-borne pathogen transmission dynamics and control.Smith, David L; Perkins, T Alex; Reiner Jr, Robert C; Barker, Christopher M; Niu, Tianchan; Chaves, Luis Fernando; Ellis, Alicia M; George, Dylan B; Le Menach, Arnaud; Pulliam, Juliet R C; Bisanzio, Donal; Buckee, Caroline; Chiyaka, Christinah; Cummings, Transactions of the Royal Society of Tropical Medicine and Hygiene2014 Apr185-9724591453
Comparison of the theoretical and real-world evolutionary potential of a genetic circuit.Razo-Mejia, M; Boedicker, J Q; Jones, D; Deluna, A; Kinney, J B; Phillips, RPhysical biology2014 Apr2600524685590
Perceptions of emotion from facial expressions are not culturally universal: evidence from a remote culture.Gendron, Maria; Roberson, Debi; van der Vyver, Jacoba Marietta; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2014 Apr251-6224708506
Calibration-free structured-illumination photoacoustic flowgraphy of transverse flow in scattering media.Yao, Junjie; Gilson, Rebecca C; Maslov, Konstantin I; Wang, Lidai; Wang, Lihong VJournal of biomedical optics2014 Apr4600724718385
Discovery of a potent stapled helix peptide that binds to the 70N domain of replication protein A.Frank, Andreas O; Vangamudi, Bhavatarini; Feldkamp, Michael D; Souza-Fagundes, Elaine M; Luzwick, Jessica W; Cortez, David; Olejniczak, Edward T; Waterson, Alex G; Rossanese, Olivia W; Chazin, Walter J; Fesik, Stephen WJournal of medicinal chemistry2014 Mar 272455-6124491171
REST and stress resistance in ageing and Alzheimer's disease.Lu, Tao; Aron, Liviu; Zullo, Joseph; Pan, Ying; Kim, Haeyoung; Chen, Yiwen; Yang, Tun-Hsiang; Kim, Hyun-Min; Drake, Derek; Liu, X Shirley; Bennett, David A; Colaiacovo, Monica P; Yankner, Bruce ANature2014 Mar 27448-5424670762
Using SV119-Gold Nanocage Conjugates to Eradicate Cancer Stem Cells Through a Combination of Photothermal and Chemo Therapies.Sun, Tianmeng; Wang, Yi; Wang, Yucai; Xu, Jinbin; Zhao, Xin; Vangveravong, Suwanna; Mach, Robert H; Xia, YounanAdvanced healthcare materials2014 Mar 26NULL24677807
Incorporation of flexible objectives and time-linked simulation with flux balance analysis.Birch, Elsa W; Udell, Madeleine; Covert, Markus WJournal of theoretical biology2014 Mar 2121-Dec24361328
Generation of complexity in fungal terpene biosynthesis: discovery of a multifunctional cytochrome P450 in the fumagillin pathway.Lin, Hsiao-Ching; Tsunematsu, Yuta; Dhingra, Sourabh; Xu, Wei; Fukutomi, Manami; Chooi, Yit-Heng; Cane, David E; Calvo, Ana M; Watanabe, Kenji; Tang, YiJournal of the American Chemical Society2014 Mar 194426-3624568283
Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior.Portugues, Ruben; Feierstein, Claudia E; Engert, Florian; Orger, Michael BNeuron2014 Mar 191328-4324656252
Genetically encoded molecular probes to visualize and perturb signaling dynamics in living biological systems.Sample, Vedangi; Mehta, Sohum; Zhang, JinJournal of cell science2014 Mar 151151-6024634506
Urogenital photoacoustic endoscope.Li, Chiye; Yang, Joon-Mo; Chen, Ruimin; Yeh, Cheng-Hung; Zhu, Liren; Maslov, Konstantin; Zhou, Qifa; Kirk Shung, K; Wang, Lihong VOptics letters2014 Mar 151473-624690816
The transcription factor titration effect dictates level of gene expression.Brewster, Robert C; Weinert, Franz M; Garcia, Hernan G; Song, Dan; Rydenfelt, Mattias; Phillips, RobCell2014 Mar 131312-2324612990
Long term stability of nanowire nanoelectronics in physiological environments.Zhou, Wei; Dai, Xiaochuan; Fu, Tian-Ming; Xie, Chong; Liu, Jia; Lieber, Charles MNano letters2014 Mar 121614-924479700
Ferromagnetic nanoparticles with peroxidase-like activity enhance the cleavage of biological macromolecules for biofilm elimination.Gao, Lizeng; Giglio, Krista M; Nelson, Jacquelyn L; Sondermann, Holger; Travis, Alexander JNanoscale2014 Mar 72588-9324468900
Medicine. Combating evolution to fight disease.Rosenberg, Susan M; Queitsch, ChristineScience (New York, N.Y.)2014 Mar 71088-924604189
Common genetic variants modulate pathogen-sensing responses in human dendritic cells.Lee, Mark N; Ye, Chun; Villani, Alexandra-Chloe; Raj, Towfique; Li, Weibo; Eisenhaure, Thomas M; Imboywa, Selina H; Chipendo, Portia I; Ran, F Ann; Slowikowski, Kamil; Ward, Lucas D; Raddassi, Khadir; McCabe, Cristin; Lee, Michelle H; Frohlich, Irene Y; HScience (New York, N.Y.)2014 Mar 7124698024604203
Approach for targeting Ras with small molecules that activate SOS-mediated nucleotide exchange.Burns, Michael C; Sun, Qi; Daniels, R Nathan; Camper, DeMarco; Kennedy, J Phillip; Phan, Jason; Olejniczak, Edward T; Lee, Taekyu; Waterson, Alex G; Rossanese, Olivia W; Fesik, Stephen WProceedings of the National Academy of Sciences of the United States of America2014 Mar 43401-624550516
Trends in antibiotic resistance in coagulase-negative staphylococci in the United States, 1999 to 2012.May, Larissa; Klein, Eili Y; Rothman, Richard E; Laxminarayan, RamananAntimicrobial agents and chemotherapy2014 Mar1404-924342646
Large-scale mapping of transposable element insertion sites using digital encoding of sample identity.Gohl, Daryl M; Freifeld, Limor; Silies, Marion; Hwa, Jennifer J; Horowitz, Mark; Clandinin, Thomas RGenetics2014 Mar615-2324374352
Cortical activity in the null space: permitting preparation without movement.Kaufman, Matthew T; Churchland, Mark M; Ryu, Stephen I; Shenoy, Krishna VNature neuroscience2014 Mar440-824487233
Lis1 regulates asymmetric division in hematopoietic stem cells and in leukemia.Zimdahl, Bryan; Ito, Takahiro; Blevins, Allen; Bajaj, Jeevisha; Konuma, Takaaki; Weeks, Joi; Koechlein, Claire S; Kwon, Hyog Young; Arami, Omead; Rizzieri, David; Broome, H Elizabeth; Chuah, Charles; Oehler, Vivian G; Sasik, Roman; Hardiman, Gary; Reya, TNature genetics2014 Mar245-5224487275
Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness.Hammerling, Michael J; Ellefson, Jared W; Boutz, Daniel R; Marcotte, Edward M; Ellington, Andrew D; Barrick, Jeffrey ENature chemical biology2014 Mar178-8024487692
Integrated photoacoustic, confocal, and two-photon microscope.Rao, Bin; Soto, Florentina; Kerschensteiner, Daniel; Wang, Lihong VJournal of biomedical optics2014 Mar3600224589986
Calibration-free absolute quantification of particle concentration by statistical analyses of photoacoustic signals in vivo.Zhou, Yong; Yao, Junjie; Maslov, Konstantin I; Wang, Lihong VJournal of biomedical optics2014 Mar3700124589987
Dependence of optical scattering from Intralipid in gelatin-gel based tissue-mimicking phantoms on mixing temperature and time.Lai, Puxiang; Xu, Xiao; Wang, Lihong VJournal of biomedical optics2014 Mar3500224604534
Crystal structure of Cas9 in complex with guide RNA and target DNA.Nishimasu, Hiroshi; Ran, F Ann; Hsu, Patrick D; Konermann, Silvana; Shehata, Soraya I; Dohmae, Naoshi; Ishitani, Ryuichiro; Zhang, Feng; Nureki, OsamuCell2014 Feb 27935-4924529477
Comprehensive proteomic profiling of outer membrane vesicles from Campylobacter jejuni.Jang, Kyoung-Soon; Sweredoski, Michael J; Graham, Robert L J; Hess, Sonja; Clemons Jr, William MJournal of proteomics2014 Feb 2690-824382552
Neurite outgrowth on electrospun nanofibers with uniaxial alignment: the effects of fiber density, surface coating, and supporting substrate.Xie, Jingwei; Liu, Wenying; MacEwan, Matthew R; Bridgman, Paul C; Xia, YounanACS nano2014 Feb 251878-8524444076
CMV Infection, TLR-2 and -4 Expression, and Cytokine Profiles in Early-Onset Preeclampsia with HELLP Syndrome.Xie, Fang; von Dadelszen, Peter; Nadeau, JosephAmerican journal of reproductive immunology (New York, N.Y. : 1989)2014 Feb 24NULL24612145
The future of whole-cell modeling.Macklin, Derek N; Ruggero, Nicholas A; Covert, Markus WCurrent opinion in biotechnology2014 Feb 17111-11524556244
Intranasal epidermal growth factor treatment rescues neonatal brain injury.Scafidi, Joseph; Hammond, Timothy R; Scafidi, Susanna; Ritter, Jonathan; Jablonska, Beata; Roncal, Maria; Szigeti-Buck, Klara; Coman, Daniel; Huang, Yuegao; McCarter Jr, Robert J; Hyder, Fahmeed; Horvath, Tamas L; Gallo, VittorioNature2014 Feb 13230-424390343
Structural insights on the role of antibodies in HIV-1 vaccine and therapy.West Jr, Anthony P; Scharf, Louise; Scheid, Johannes F; Klein, Florian; Bjorkman, Pamela J; Nussenzweig, Michel CCell2014 Feb 13633-4824529371
Lipid Modulation of Calcium Flux through CaV2.3 Regulates Acrosome Exocytosis and Fertilization.Cohen, Roy; Buttke, Danielle E; Asano, Atsushi; Mukai, Chinatsu; Nelson, Jacquelyn L; Ren, Dongjun; Miller, Richard J; Cohen-Kutner, Moshe; Atlas, Daphne; Travis, Alexander JDevelopmental cell2014 Feb 10310-2124525187
Cultural Relativity in Perceiving Emotion From Vocalizations.Gendron, Maria; Roberson, Debi; van der Vyver, Jacoba Marieta; Barrett, Lisa FeldmanPsychological science2014 Feb 5NULL24501109
Grafting aptamers onto gold nanostars increases in vitro efficacy in a wide range of cancer cell types.Dam, Duncan Hieu M; Culver, Kayla S B; Odom, Teri WMolecular pharmaceutics2014 Feb 3580-724422969
Spatially Fourier-encoded photoacoustic microscopy using a digital micromirror device.Liang, Jinyang; Gao, Liang; Li, Chiye; Wang, Lihong VOptics letters2014 Feb 1430-324487832
Metabolite Profiling of 5'-AMP-Induced Hypometabolism.Zhao, Zhaoyang; Van Oort, Anita; Tao, Zhenyin; O'Brien 3rd, William G; Lee, Cheng ChiMetabolomics : Official journal of the Metabolomic Society2014 Feb 163-7624511307
The Determinants of Federal and State Enforcement of Workplace Safety Regulations: OSHA Inspections 1990-2010.Jung, Juergen; Makowsky, Michael DJournal of regulatory economics2014 Feb 1Jan-3324659856
Serotonergic neuron regulation informed by in vivo single-cell transcriptomics.Spaethling, Jennifer M; Piel, David; Dueck, Hannah; Buckley, Peter T; Morris, Jacqueline F; Fisher, Stephen A; Lee, Jaehee; Sul, Jai-Yoon; Kim, Junhyong; Bartfai, Tamas; Beck, Sheryl G; Eberwine, James HFASEB journal : official publication of the Federation of American Societies for Experimental Biology2014 Feb771-8024192459
Likelihood methods for point processes with refractoriness.Citi, Luca; Ba, Demba; Brown, Emery N; Barbieri, RiccardoNeural computation2014 Feb237-6324206384
Statistical approach to protein quantification.Gerster, Sarah; Kwon, Taejoon; Ludwig, Christina; Matondo, Mariette; Vogel, Christine; Marcotte, Edward M; Aebersold, Ruedi; Buhlmann, PeterMolecular & cellular proteomics : MCP2014 Feb666-7724255132
Flies and humans share a motion estimation strategy that exploits natural scene statistics.Clark, Damon A; Fitzgerald, James E; Ales, Justin M; Gohl, Daryl M; Silies, Marion A; Norcia, Anthony M; Clandinin, Thomas RNature neuroscience2014 Feb296-30324390225
Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Lovatt, Ditte; Ruble, Brittani K; Lee, Jaehee; Dueck, Hannah; Kim, Tae Kyung; Fisher, Stephen; Francis, Chantal; Spaethling, Jennifer M; Wolf, John A; Grady, M Sean; Ulyanova, Alexandra V; Yeldell, Sean B; Griepenburg, Julianne C; Buckley, Peter T; Kim, JNature methods2014 Feb190-624412976
Intention estimation in brain-machine interfaces.Fan, Joline M; Nuyujukian, Paul; Kao, Jonathan C; Chestek, Cynthia A; Ryu, Stephen I; Shenoy, Krishna VJournal of neural engineering2014 Feb1600424654266
Males shorten the life span of C. elegans hermaphrodites via secreted compounds.Maures, Travis J; Booth, Lauren N; Benayoun, Berenice A; Izrayelit, Yevgeniy; Schroeder, Frank C; Brunet, AnneScience (New York, N.Y.)2014 Jan 31541-424292626
Neonatal insulin action impairs hypothalamic neurocircuit formation in response to maternal high-fat feeding.Vogt, Merly C; Paeger, Lars; Hess, Simon; Steculorum, Sophie M; Awazawa, Motoharu; Hampel, Brigitte; Neupert, Susanne; Nicholls, Hayley T; Mauer, Jan; Hausen, A Christine; Predel, Reinhard; Kloppenburg, Peter; Horvath, Tamas L; Bruning, Jens CCell2014 Jan 30495-50924462248
Improving CRISPR-Cas nuclease specificity using truncated guide RNAs.Fu, Yanfang; Sander, Jeffry D; Reyon, Deepak; Cascio, Vincent M; Joung, J KeithNature biotechnology2014 Jan 26NULL24463574
Neural Dynamics of Reaching following Incorrect or Absent Motor Preparation.Ames, K Cora; Ryu, Stephen I; Shenoy, Krishna VNeuron2014 Jan 22438-5124462104
FuseFISH: robust detection of transcribed gene fusions in single cells.Semrau, Stefan; Crosetto, Nicola; Bienko, Magda; Boni, Marina; Bernasconi, Paolo; Chiarle, Roberto; van Oudenaarden, AlexanderCell reports2014 Jan 1618-2324373969
PIWI proteins and PIWI-interacting RNAs in the soma.Ross, Robert J; Weiner, Molly M; Lin, HaifanNature2014 Jan 16353-924429634
Inconvenient truths in the pursuit of scientific knowledge and public health.Relman, David AThe Journal of infectious diseases2014 Jan 15170-224106297
PIWI proteins are essential for early Drosophila embryogenesis.Mani, Sneha Ramesh; Megosh, Heather; Lin, HaifanDevelopmental biology2014 Jan 15340-924184635
Fabrication of Cell Patches Using Biodegradable Scaffolds with a Hexagonal Array of Interconnected Pores (SHAIPs).Zhang, Yu Shrike; Yao, Junjie; Wang, Lihong V; Xia, YounanPolymer2014 Jan 14445-45224443593
Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge.Hingorani, Karan S; Gierasch, Lila MCurrent opinion in structural biology2014 Jan 1381-9024434632
Using well-defined Ag nanocubes as substrates to quantify the spatial resolution and penetration depth of surface-enhanced Raman scattering imaging.Moran, Christine H; Rycenga, Matthew; Xia, Xiaohu; Cobley, Claire M; Xia, YounanNanotechnology2014 Jan 101400724334508
Photoimprint photoacoustic microscopy for three-dimensional label-free subdiffraction imaging.Yao, Junjie; Wang, Lidai; Li, Chiye; Zhang, Chi; Wang, Lihong VPhysical review letters2014 Jan 101430224483902
Mycobacteria manipulate macrophage recruitment through coordinated use of membrane lipids.Cambier, C J; Takaki, Kevin K; Larson, Ryan P; Hernandez, Rafael E; Tobin, David M; Urdahl, Kevin B; Cosma, Christine L; Ramakrishnan, LalitaNature2014 Jan 9218-2224336213
Noninvasive prenatal diagnosis in a fetus at risk for methylmalonic acidemia.Gu, Wei; Koh, Winston; Blumenfeld, Yair J; El-Sayed, Yasser Y; Hudgins, Louanne; Hintz, Susan R; Quake, Stephen RGenetics in medicine : official journal of the American College of Medical Genetics2014 Jan 9NULL24406457
The impact of heterogeneous transmission on the establishment and spread of antimalarial drug resistance.Klein, Eili YJournal of theoretical biology2014 Jan 7177-8524076451
Electrical Stimulation of the Ventral Tegmental Area Induces Reanimation from General Anesthesia.Solt, Ken; Van Dort, Christa J; Chemali, Jessica J; Taylor, Norman E; Kenny, Jonathan D; Brown, Emery NAnesthesiology2014 Jan 6NULL24398816
Is there consistency and specificity of autonomic changes during emotional episodes? Guidance from the Conceptual Act Theory and psychophysiology.Quigley, Karen S; Barrett, Lisa FeldmanBiological psychology2014 Jan 2NULL24388802
Analysis of maternal microchimerism in rhesus monkeys (Macaca mulatta) using real-time quantitative PCR amplification of MHC polymorphisms.Bakkour, Sonia; Baker, Chris A R; Tarantal, Alice F; Wen, Li; Busch, Michael P; Lee, Tzong-Hae; McCune, Joseph MChimerism2014 Jan-Mar4180524451553
PhosphoNetworks: a database for human phosphorylation networks.Hu, Jianfei; Rho, Hee-Sool; Newman, Robert H; Zhang, Jin; Zhu, Heng; Qian, JiangBioinformatics (Oxford, England)2014 Jan 1141-224227675
Expanding the scope of site-specific recombinases for genetic and metabolic engineering.Gaj, Thomas; Sirk, Shannon J; Barbas 3rd, Carlos FBiotechnology and bioengineering2014 Jan4165423982993
Cross-reactive immune responses as primary drivers of malaria chronicity.Klein, Eili Y; Graham, Andrea L; Llinas, Manuel; Levin, SimonInfection and immunity2014 Jan140-5124126530
Retrospective respiration-gated whole-body photoacoustic computed tomography of mice.Xia, Jun; Chen, Wanyi; Maslov, Konstantin; Anastasio, Mark A; Wang, Lihong VJournal of biomedical optics2014 Jan1600324395586
Label-free photoacoustic microscopy of peripheral nerves.Matthews, Thomas Paul; Zhang, Chi; Yao, Da-Kang; Maslov, Konstantin; Wang, Lihong VJournal of biomedical optics2014 Jan1600424395587
Photoacoustic measurement of the Gruneisen parameter of tissue.Yao, Da-Kang; Zhang, Chi; Maslov, Konstantin; Wang, Lihong VJournal of biomedical optics2014 Jan1700724474512
Dissecting genomic diversity, one cell at a time.Blainey, Paul C; Quake, Stephen RNature methods2014 Jan19-2124524132
Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration.Rydenfelt, Mattias; Cox, Robert Sidney; Garcia, Hernan; Phillips, RobPhysical review. E, Statistical, nonlinear, and soft matter physics2014 Jan1270224580252
Chromatin immunoprecipitation assay of Piwi in Drosophila.Yin, Hang; Lin, HaifanMethods in molecular biology (Clifton, N.J.)20144165024178552
Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation.Ngo, Huu B; Lovely, Geoffrey A; Phillips, Rob; Chan, David CNature communications2014307724435062
Chronic Spinal Cord Electrical Stimulation Protects Against 6-hydroxydopamine Lesions.Yadav, Amol P; Fuentes, Romulo; Zhang, Hao; Vinholo, Thais; Wang, Chi-Han; Freire, Marco Aurelio M; Nicolelis, Miguel A LScientific reports2014383924452435
Composition and function of T cell subpopulations are slow to change despite effective antiretroviral treatment of HIV disease.Emu, Brinda; Moretto, Walter J; Hoh, Rebecca; Krone, Melissa; Martin, Jeffrey N; Nixon, Douglas F; Deeks, Steven G; McCune, Joseph MPloS one2014e8561324465619
Cell-penetrating peptide-mediated delivery of TALEN proteins via bioconjugation for genome engineering.Liu, Jia; Gaj, Thomas; Patterson, James T; Sirk, Shannon J; Barbas 3rd, Carlos FPloS one2014e8575524465685
fMRI of retina-originated phosphenes experienced by patients with leber congenital amaurosis.Ashtari, Manzar; Cyckowski, Laura; Yazdi, Alborz; Viands, Amanda; Marshall, Kathleen; Bokkon, Istvan; Maguire, Albert; Bennett, JeanPloS one2014e8606824465873
Ultrasonically encoded wavefront shaping for focusing into random media.Tay, Jian Wei; Lai, Puxiang; Suzuki, Yuta; Wang, Lihong VScientific reports2014391824472822
Multicontrast photoacoustic in vivo imaging using near-infrared fluorescent proteins.Krumholz, Arie; Shcherbakova, Daria M; Xia, Jun; Wang, Lihong V; Verkhusha, Vladislav VScientific reports2014393924487319
Deconvolution of serum cortisol levels by using compressed sensing.Faghih, Rose T; Dahleh, Munther A; Adler, Gail K; Klerman, Elizabeth B; Brown, Emery NPloS one2014e8520424489656
Identification of germline transcriptional regulatory elements in Aedes aegypti.Akbari, Omar S; Papathanos, Philippos A; Sandler, Jeremy E; Kennedy, Katie; Hay, Bruce AScientific reports2014395424492376
Institutions and cooperation in an ecology of games.Smaldino, Paul E; Lubell, MarkArtificial life2014207-2124494613
Identification of cinnabarinic acid as a novel endogenous aryl hydrocarbon receptor ligand that drives IL-22 production.Lowe, Margaret M; Mold, Jeff E; Kanwar, Bittoo; Huang, Yong; Louie, Alexander; Pollastri, Michael P; Wang, Cuihua; Patel, Gautam; Franks, Diana G; Schlezinger, Jennifer; Sherr, David H; Silverstone, Allen E; Hahn, Mark E; McCune, Joseph MPloS one2014e8787724498387
Visualizing Genomes with Oligopaint FISH Probes.Beliveau, Brian J; Apostolopoulos, Nicholas; Wu, Chao-TingCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]201414.23.1-14.23.2024510436
Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria.Pandey, Shree P; Winkler, Jonathan A; Li, Hu; Camacho, Diogo M; Collins, James J; Walker, Graham CBMC genomics201412124511998
Photoacoustic thermography of tissue.Ke, Haixin; Tai, Stephen; Wang, Lihong VJournal of biomedical optics20142600324522803
Maternal nutrition induces pervasive gene expression changes but no detectable DNA methylation differences in the liver of adult offspring.Cannon, Matthew V; Buchner, David A; Hester, James; Miller, Hadley; Sehayek, Ephraim; Nadeau, Joseph H; Serre, DavidPloS one2014e9033524594983
Metabolic regulation of immune responses.Ganeshan, Kirthana; Chawla, AjayAnnual review of immunology2014609-3424655299
Influenza A H1N1 pandemic strain evolution--divergence and the potential for antigenic drift variants.Klein, Eili Y; Serohijos, Adrian W R; Choi, Jeong-Mo; Shakhnovich, Eugene I; Pekosz, AndrewPloS one2014e9363224699432
Imaging neural spiking in brain tissue using FRET-opsin protein voltage sensors.Gong, Yiyang; Wagner, Mark J; Zhong Li, Jin; Schnitzer, Mark JNature communications2014367424755708
A PKA activity sensor for quantitative analysis of endogenous GPCR signaling via 2-photon FRET-FLIM imaging.Chen, Yao; Saulnier, Jessica L; Yellen, Gary; Sabatini, Bernardo LFrontiers in pharmacology20145624765076
Themis sets the signal threshold for positive and negative selection in T-cell development.Fu, Guo; Casas, Javier; Rigaud, Stephanie; Rybakin, Vasily; Lambolez, Florence; Brzostek, Joanna; Hoerter, John A H; Paster, Wolfgang; Acuto, Oreste; Cheroutre, Hilde; Sauer, Karsten; Gascoigne, Nicholas R JNature2013 Dec 19441-524226767
Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.Kieffer-Kwon, Kyong-Rim; Tang, Zhonghui; Mathe, Ewy; Qian, Jason; Sung, Myong-Hee; Li, Guoliang; Resch, Wolfgang; Baek, Songjoon; Pruett, Nathanael; Grontved, Lars; Vian, Laura; Nelson, Steevenson; Zare, Hossein; Hakim, Ofir; Reyon, Deepak; Yamane, Arito;Cell2013 Dec 191507-2024360274
Absolute photoacoustic thermometry in deep tissue.Yao, Junjie; Ke, Haixin; Tai, Stephen; Zhou, Yong; Wang, Lihong VOptics letters2013 Dec 155228-3124322224
Wide-field two-dimensional multifocal optical-resolution photoacoustic-computed microscopy.Xia, Jun; Li, Guo; Wang, Lidai; Nasiriavanaki, Mohammadreza; Maslov, Konstantin; Engelbach, John A; Garbow, Joel R; Wang, Lihong VOptics letters2013 Dec 155236-924322226
Free-standing kinked nanowire transistor probes for targeted intracellular recording in three dimensions.Qing, Quan; Jiang, Zhe; Xu, Lin; Gao, Ruixuan; Mai, Liqiang; Lieber, Charles MNature nanotechnology2013 Dec 15NULL24336402
Structural basis for enhanced HIV-1 neutralization by a dimeric immunoglobulin G form of the glycan-recognizing antibody 2G12.Wu, Yunji; West Jr, Anthony P; Kim, Helen J; Thornton, Matthew E; Ward, Andrew B; Bjorkman, Pamela JCell reports2013 Dec 121443-5524316082
Nasal Microenvironments and Interspecific Interactions Influence Nasal Microbiota Complexity and S.ýýaureus Carriage.Yan, Miling; Pamp, Sunje J; Fukuyama, Julia; Hwang, Peter H; Cho, Do-Yeon; Holmes, Susan; Relman, David ACell host & microbe2013 Dec 11631-4024331461
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis.Schwartz, Schraga; Agarwala, Sudeep D; Mumbach, Maxwell R; Jovanovic, Marko; Mertins, Philipp; Shishkin, Alexander; Tabach, Yuval; Mikkelsen, Tarjei S; Satija, Rahul; Ruvkun, Gary; Carr, Steven A; Lander, Eric S; Fink, Gerald R; Regev, AvivCell2013 Dec 51409-2124269006
Adipose Tissue Macrophages: Amicus adipem?Odegaard, Justin I; Ganeshan, Kirthana; Chawla, AjayCell metabolism2013 Dec 3767-824315364
Diversity of human tRNA genes from the 1000-genomes project.Parisien, Marc; Wang, Xiaoyun; Pan, TaoRNA biology2013 Dec 11853-6724448271
Graphene-based contrast agents for photoacoustic and thermoacoustic tomography.Lalwani, Gaurav; Cai, Xin; Nie, Liming; Wang, Lihong V; Sitharaman, BalajiPhotoacoustics2013 Dec 162-6724490141
Locus-specific editing of histone modifications at endogenous enhancers.Mendenhall, Eric M; Williamson, Kaylyn E; Reyon, Deepak; Zou, James Y; Ram, Oren; Joung, J Keith; Bernstein, Bradley ENature biotechnology2013 Dec1133-624013198
Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins.Maeder, Morgan L; Angstman, James F; Richardson, Marcy E; Linder, Samantha J; Cascio, Vincent M; Tsai, Shengdar Q; Ho, Quan H; Sander, Jeffry D; Reyon, Deepak; Bernstein, Bradley E; Costello, Joseph F; Wilkinson, Miles F; Joung, J KeithNature biotechnology2013 Dec1137-4224108092
Accelerated discovery via a whole-cell model.Sanghvi, Jayodita C; Regot, Sergi; Carrasco, Silvia; Karr, Jonathan R; Gutschow, Miriam V; Bolival Jr, Benjamin; Covert, Markus WNature methods2013 Dec1192-524185838
DataHigh: graphical user interface for visualizing and interacting with high-dimensional neural activity.Cowley, Benjamin R; Kaufman, Matthew T; Butler, Zachary S; Churchland, Mark M; Ryu, Stephen I; Shenoy, Krishna V; Yu, Byron MJournal of neural engineering2013 Dec6601224216250
DNA sequence-dependent mechanics and protein-assisted bending in repressor-mediated loop formation.Boedicker, James Q; Garcia, Hernan G; Johnson, Stephanie; Phillips, RobPhysical biology2013 Dec6600524231252
Discovery of a potent inhibitor of replication protein a protein-protein interactions using a fragment-linking approach.Frank, Andreas O; Feldkamp, Michael D; Kennedy, J Phillip; Waterson, Alex G; Pelz, Nicholas F; Patrone, James D; Vangamudi, Bhavatarini; Camper, DeMarco V; Rossanese, Olivia W; Chazin, Walter J; Fesik, Stephen WJournal of medicinal chemistry2013 Nov 279242-5024147804
25th anniversary article: galvanic replacement: a simple and versatile route to hollow nanostructures with tunable and well-controlled properties.Xia, Xiaohu; Wang, Yi; Ruditskiy, Aleksey; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2013 Nov 266313-3324027074
Rapid, stable, chemoselective labeling of thiols with Julia-Kocienski-like reagents: a serum-stable alternative to maleimide-based protein conjugation.Toda, Narihiro; Asano, Shigehiro; Barbas 3rd, Carlos FAngewandte Chemie (International ed. in English)2013 Nov 2512592-624123851
Delicate Balance between Functionally Required Flexibility and Aggregation Risk in a *-Rich Protein.Ferrolino, Mylene C; Zhuravleva, Anastasia; Budyak, Ivan L; Krishnan, Beena; Gierasch, Lila MBiochemistry2013 Nov 25NULL24236614
Regulation of Endogenous Human Gene Expression by Ligand-Inducible TALE Transcription Factors.Mercer, Andrew C; Gaj, Thomas; Sirk, Shannon J; Lamb, Brian M; Barbas 3rd, Carlos FACS synthetic biology2013 Nov 22NULL24251925
Antigen-specific B-cell receptor sensitizes B cells to infection by influenza virus.Dougan, Stephanie K; Ashour, Joseph; Karssemeijer, Roos A; Popp, Maximilian W; Avalos, Ana M; Barisa, Marta; Altenburg, Arwen F; Ingram, Jessica R; Cragnolini, Juan Jose; Guo, Chunguang; Alt, Frederick W; Jaenisch, Rudolf; Ploegh, Hidde LNature2013 Nov 21406-924141948
Temporal response of the human virome to immunosuppression and antiviral therapy.De Vlaminck, Iwijn; Khush, Kiran K; Strehl, Calvin; Kohli, Bitika; Luikart, Helen; Neff, Norma F; Okamoto, Jennifer; Snyder, Thomas M; Cornfield, David N; Nicolls, Mark R; Weill, David; Bernstein, Daniel; Valantine, Hannah A; Quake, Stephen RCell2013 Nov 211178-8724267896
Increased robustness of single-molecule counting with microfluidics, digital isothermal amplification, and a mobile phone versus real-time kinetic measurements.Selck, David A; Karymov, Mikhail A; Sun, Bing; Ismagilov, Rustem FAnalytical chemistry2013 Nov 1911129-3624199852
CD4 CTL: Living up to the challenge.Cheroutre, Hilde; Husain, Mohammad MushtaqSeminars in immunology2013 Nov 15273-8124246226
Ultrasonically encoded photoacoustic flowgraphy in biological tissue.Wang, Lidai; Xia, Jun; Yao, Junjie; Maslov, Konstantin I; Wang, Lihong VPhysical review letters2013 Nov 1520430124289689
SHANK3 and IGF1 restore synaptic deficits in neurons from 22q13 deletion syndrome patients.Shcheglovitov, Aleksandr; Shcheglovitova, Olesya; Yazawa, Masayuki; Portmann, Thomas; Shu, Rui; Sebastiano, Vittorio; Krawisz, Anna; Froehlich, Wendy; Bernstein, Jonathan A; Hallmayer, Joachim F; Dolmetsch, Ricardo ENature2013 Nov 14267-7124132240
A cytochrome P450 serves as an unexpected terpene cyclase during fungal meroterpenoid biosynthesis.Chooi, Yit-Heng; Hong, Young J; Cacho, Ralph A; Tantillo, Dean J; Tang, YiJournal of the American Chemical Society2013 Nov 1316805-824161266
Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins.Teytelman, Leonid; Thurtle, Deborah M; Rine, Jasper; van Oudenaarden, AlexanderProceedings of the National Academy of Sciences of the United States of America2013 Nov 1218602-724173036
The histone demethylase LSD1/KDM1A promotes the DNA damage response.Mosammaparast, Nima; Kim, Haeyoung; Laurent, Benoit; Zhao, Yu; Lim, Hui Jun; Majid, Mona C; Dango, Sebastian; Luo, Yuying; Hempel, Kristina; Sowa, Mathew E; Gygi, Steven P; Steen, Hanno; Harper, J Wade; Yankner, Bruce; Shi, YangThe Journal of cell biology2013 Nov 11457-7024217620
Blood spotlight on leukocytes and obesity.Carvalheira, Jose Barreto Campello; Qiu, Yifu; Chawla, AjayBlood2013 Nov 73263-724065242
Context-dependent computation by recurrent dynamics in prefrontal cortex.Mante, Valerio; Sussillo, David; Shenoy, Krishna V; Newsome, William TNature2013 Nov 778-8424201281
Feedback control of gene expression variability in the Caenorhabditis elegans Wnt pathway.Ji, Ni; Middelkoop, Teije C; Mentink, Remco A; Betist, Marco C; Tonegawa, Satto; Mooijman, Dylan; Korswagen, Hendrik C; van Oudenaarden, AlexanderCell2013 Nov 7869-8024209624
A brain-machine interface enables bimanual arm movements in monkeys.Ifft, Peter J; Shokur, Solaiman; Li, Zheng; Lebedev, Mikhail A; Nicolelis, Miguel A LScience translational medicine2013 Nov 6210ra15424197735
Imaging neuronal populations in behaving rodents: paradigms for studying neural circuits underlying behavior in the mammalian cortex.Chen, Jerry L; Andermann, Mark L; Keck, Tara; Xu, Ning-Long; Ziv, YanivThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Nov 617631-4024198355
Perfusion Imaging of Focal Cortical Dysplasia Using Arterial Spin Labeling: Correlation With Histopathological Vascular Density.Wintermark, Pia; Lechpammer, Mirna; Warfield, Simon K; Kosaras, Bela; Takeoka, Masanori; Poduri, Annapurna; Madsen, Joseph R; Bergin, Ann M; Whalen, Stephen; Jensen, Frances EJournal of child neurology2013 Nov1474-148223696629
Directed evolution of the TALE N-terminal domain for recognition of all 5' bases.Lamb, Brian M; Mercer, Andrew C; Barbas 3rd, Carlos FNucleic acids research2013 Nov9779-8523980031
AMPA receptor antagonist NBQX attenuates later-life epileptic seizures and autistic-like social deficits following neonatal seizures.Lippman-Bell, Jocelyn J; Rakhade, Sanjay N; Klein, Peter M; Obeid, Makram; Jackson, Michele C; Joseph, Annelise; Jensen, Frances EEpilepsia2013 Nov1922-3224117347
Genome engineering using the CRISPR-Cas9 system.Ran, F Ann; Hsu, Patrick D; Wright, Jason; Agarwala, Vineeta; Scott, David A; Zhang, FengNature protocols2013 Nov2281-30824157548
Cooperation in Harsh Environments and the Emergence of Spatial Patterns.Smaldino, Paul EChaos, solitons, and fractals2013 NovNULL24277977
PIWI proteins are essential for early Drosophila embryogenesis.Mani, Sneha Ramesh; Megosh, Heather; Lin, HaifanDevelopmental biology2013 Oct 31NULL24184635
Complexity generation in fungal polyketide biosynthesis: a spirocycle-forming P450 in the concise pathway to the antifungal drug griseofulvin.Cacho, Ralph A; Chooi, Yit-Heng; Zhou, Hui; Tang, YiACS chemical biology2013 Oct 182322-3023978092
Dendritic Glutamate Receptor mRNAs Show Contingent Local Hotspot-Dependent Translational Dynamics.Kim, Tae Kyung; Sul, Jai-Yoon; Helmfors, Henrik; Langel, Ulo; Kim, Junhyong; Eberwine, JamesCell reports2013 Oct 17114-2524075992
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.Kashyap, Purna C; Marcobal, Angela; Ursell, Luke K; Smits, Samuel A; Sonnenburg, Erica D; Costello, Elizabeth K; Higginbottom, Steven K; Domino, Steven E; Holmes, Susan P; Relman, David A; Knight, Rob; Gordon, Jeffrey I; Sonnenburg, Justin LProceedings of the National Academy of Sciences of the United States of America2013 Oct 1517059-6424062455
Identification of discrete functional subregions of the human periaqueductal gray.Satpute, Ajay B; Wager, Tor D; Cohen-Adad, Julien; Bianciardi, Marta; Choi, Ji-Kyung; Buhle, Jason T; Wald, Lawrence L; Barrett, Lisa FeldmanProceedings of the National Academy of Sciences of the United States of America2013 Oct 1517101-624082116
Higher 5-hydroxymethylcytosine identifies immortal DNA strand chromosomes in asymmetrically self-renewing distributed stem cells.Huh, Yang Hoon; Cohen, Justin; Sherley, James LProceedings of the National Academy of Sciences of the United States of America2013 Oct 1516862-724082118
Non-Invasive and In Situ Characterization of the Degradation of Biomaterial Scaffolds by Volumetric Photoacoustic Microscopy.Zhang, Yu Shrike; Cai, Xin; Yao, Junjie; Xing, Wenxin; Wang, Lihong V; Xia, YounanAngewandte Chemie (International ed. in English)2013 Oct 15NULL24130155
Silver nanocube on gold microplate as a well-defined and highly active substrate for SERS detection.Xia, Xiaohu; Rycenga, Matthew; Qin, Dong; Xia, YounanJournal of materials chemistry. C, Materials for optical and electronic devices2013 Oct 14NULL24187611
Type 2 innate lymphoid cells control eosinophil homeostasis.Nussbaum, Jesse C; Van Dyken, Steven J; von Moltke, Jakob; Cheng, Laurence E; Mohapatra, Alexander; Molofsky, Ari B; Thornton, Emily E; Krummel, Matthew F; Chawla, Ajay; Liang, Hong-Erh; Locksley, Richard MNature2013 Oct 10245-24824037376
Visualization of synaptic inhibition with an optogenetic sensor developed by cell-free protein engineering automation.Grimley, Joshua S; Li, Li; Wang, Weina; Wen, Lei; Beese, Lorena S; Hellinga, Homme W; Augustine, George JThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Oct 916297-30924107961
Chemical analog-to-digital signal conversion based on robust threshold chemistry and its evaluation in the context of microfluidics-based quantitative assays.Huynh, Toan; Sun, Bing; Li, Liang; Nichols, Kevin P; Koyner, Jay L; Ismagilov, Rustem FJournal of the American Chemical Society2013 Oct 214775-8324060606
Calibration-free in vivo transverse blood flowmetry based on cross correlation of slow time profiles from photoacoustic microscopy.Zhou, Yong; Liang, Jinyang; Maslov, Konstantin I; Wang, Lihong VOptics letters2013 Oct 13882-524081077
Using a kinase-inducible bimolecular switch to control enzyme activity in living cells.Mehta, Sohum; Zhang, JinCurrent protocols in chemical biology2013 Oct 1227-3724391085
CRISPR RNA-guided activation of endogenous human genes.Maeder, Morgan L; Linder, Samantha J; Cascio, Vincent M; Fu, Yanfang; Ho, Quan H; Joung, J KeithNature methods2013 Oct977-923892898
Conceptualizing and experiencing compassion.Condon, Paul; Feldman Barrett, LisaEmotion (Washington, D.C.)2013 Oct817-2123914766
In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites.Sander, Jeffry D; Ramirez, Cherie L; Linder, Samantha J; Pattanayak, Vikram; Shoresh, Noam; Ku, Manching; Foden, Jennifer A; Reyon, Deepak; Bernstein, Bradley E; Liu, David R; Joung, J KeithNucleic acids research2013 Octe18123945932
Nanoelectronics Meets Biology: From New Nanoscale Devices for Live-Cell Recording to 3D Innervated Tissues.Duan, Xiaojie; Lieber, Charles MChemistry, an Asian journal2013 Oct2304-1423946279
Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases.Qi, Yiping; Li, Xiaohong; Zhang, Yong; Starker, Colby G; Baltes, Nicholas J; Zhang, Feng; Sander, Jeffry D; Reyon, Deepak; Joung, J Keith; Voytas, Daniel FG3 (Bethesda, Md.)2013 Oct1707-1523979943
ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.Lin, John Y; Knutsen, Per Magne; Muller, Arnaud; Kleinfeld, David; Tsien, Roger YNature neuroscience2013 Oct1499-50823995068
Burst suppression probability algorithms: state-space methods for tracking EEG burst suppression.Chemali, Jessica; Ching, ShiNung; Purdon, Patrick L; Solt, Ken; Brown, Emery NJournal of neural engineering2013 Oct5601724018288
A brain-machine interface for control of medically-induced coma.Shanechi, Maryam M; Chemali, Jessica J; Liberman, Max; Solt, Ken; Brown, Emery NPLoS computational biology2013 Octe100328424204231
A coaxial optrode as multifunction write-read probe for optogenetic studies in non-human primates.Ozden, Ilker; Wang, Jing; Lu, Yao; May, Travis; Lee, Joonhee; Goo, Werapong; O'Shea, Daniel J; Kalanithi, Paul; Diester, Ilka; Diagne, Mohamed; Deisseroth, Karl; Shenoy, Krishna V; Nurmikko, Arto VJournal of neuroscience methods2013 Sep 30142-5423867081
Real-time segmentation of burst suppression patterns in critical care EEG monitoring.Brandon Westover, M; Shafi, Mouhsin M; Ching, Shinung; Chemali, Jessica J; Purdon, Patrick L; Cash, Sydney S; Brown, Emery NJournal of neuroscience methods2013 Sep 30131-4123891828
Phospholipase B is activated in response to sterol removal and stimulates acrosome exocytosis in murine sperm.Asano, Atsushi; Nelson-Harrington, Jacquelyn L; Travis, Alexander JThe Journal of biological chemistry2013 Sep 2728104-1523943622
Microscale polymer bottles corked with a phase-change material for temperature-controlled release.Hyun, Dong Choon; Lu, Ping; Choi, Sang-Il; Jeong, Unyong; Xia, YounanAngewandte Chemie (International ed. in English)2013 Sep 2710468-7123959631
Circadian gene Bmal1 regulates diurnal oscillations of Ly6C(hi) inflammatory monocytes.Nguyen, Khoa D; Fentress, Sarah J; Qiu, Yifu; Yun, Karen; Cox, Jeffery S; Chawla, AjayScience (New York, N.Y.)2013 Sep 271483-823970558
Mitofusin 2 in POMC Neurons Connects ER Stress with Leptin Resistance and Energy Imbalance.Schneeberger, Marc; Dietrich, Marcelo O; Sebastian, David; Imbernon, Monica; Castano, Carlos; Garcia, Ainhoa; Esteban, Yaiza; Gonzalez-Franquesa, Alba; Rodriguez, Ignacio Castrillon; Bortolozzi, Analia; Garcia-Roves, Pablo M; Gomis, Ramon; Nogueiras, RubeCell2013 Sep 26172-8724074867
Rapidly-dissolvable microneedle patches via a highly scalable and reproducible soft lithography approach.Moga, Katherine A; Bickford, Lissett R; Geil, Robert D; Dunn, Stuart S; Pandya, Ashish A; Wang, Yapei; Fain, John H; Archuleta, Christine F; O'Neill, Adrian T; Desimone, Joseph MAdvanced materials (Deerfield Beach, Fla.)2013 Sep 255060-623893866
Small-animal whole-body photoacoustic tomography: a review.Xia, Jun; Wang, LihongIEEE transactions on bio-medical engineering2013 Sep 25NULL24108456
The Role of Aromatic-Aromatic Interactions in Strand-Strand Stabilization of ýý-Sheets.Budyak, Ivan L; Zhuravleva, Anastasia; Gierasch, Lila MJournal of molecular biology2013 Sep 233522-3523810905
Surface Reengineering of RPA70N Enables Cocrystallization with an Inhibitor of the Replication Protein A Interaction Motif of ATR Interacting Protein.Feldkamp, Michael D; Frank, Andreas O; Kennedy, J Phillip; Patrone, James D; Vangamudi, Bhavatarini; Waterson, Alex G; Fesik, Stephen W; Chazin, Walter JBiochemistry2013 Sep 176515-2423962067
Developmental Expression of N-Methyl-D-Aspartate (NMDA) Receptor Subunits in Human White and Gray Matter: Potential Mechanism of Increased Vulnerability in the Immature Brain.Jantzie, Lauren L; Talos, Delia M; Jackson, Michele C; Park, Hyun-Kyung; Graham, Dionne A; Lechpammer, Mirna; Folkerth, Rebecca D; Volpe, Joseph J; Jensen, Frances ECerebral cortex (New York, N.Y. : 1991)2013 Sep 17NULL24046081
Dampening of expression oscillations by synchronous regulation of a microRNA and its target.Kim, Dong Hyun; Grun, Dominic; van Oudenaarden, AlexanderNature genetics2013 Sep 15NULL24036951
Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.Ran, F Ann; Hsu, Patrick D; Lin, Chie-Yu; Gootenberg, Jonathan S; Konermann, Silvana; Trevino, Alexandro E; Scott, David A; Inoue, Azusa; Matoba, Shogo; Zhang, Yi; Zhang, FengCell2013 Sep 121380-923992846
Expanding the primate body schema in sensorimotor cortex by virtual touches of an avatar.Shokur, Solaiman; O'Doherty, Joseph E; Winans, Jesse A; Bleuler, Hannes; Lebedev, Mikhail A; Nicolelis, Miguel A LProceedings of the National Academy of Sciences of the United States of America2013 Sep 1015121-623980141
Heparan sulfate proteoglycans containing a glypican 5 core and 2-O-sulfo-iduronic acid function as Sonic Hedgehog co-receptors to promote proliferation.Witt, Rochelle M; Hecht, Marie-Lyn; Pazyra-Murphy, Maria F; Cohen, Samuel M; Noti, Christian; van Kuppevelt, Toin H; Fuller, Maria; Chan, Jennifer A; Hopwood, John J; Seeberger, Peter H; Segal, Rosalind AThe Journal of biological chemistry2013 Sep 626275-8823867465
Patterns of nucleotide and haplotype diversity at ICAM-1 across global human populations with varying levels of malaria exposure.Gomez, Felicia; Tomas, Gil; Ko, Wen-Ya; Ranciaro, Alessia; Froment, Alain; Ibrahim, Muntaser; Lema, Godfrey; Nyambo, Thomas B; Omar, Sabah A; Wambebe, Charles; Hirbo, Jibril B; Rocha, Jorge; Tishkoff, Sarah AHuman genetics2013 Sep987-9923609612
The developmental transcriptome of the mosquito Aedes aegypti, an invasive species and major arbovirus vector.Akbari, Omar S; Antoshechkin, Igor; Amrhein, Henry; Williams, Brian; Diloreto, Race; Sandler, Jeremy; Hay, Bruce AG3 (Bethesda, Md.)2013 Sep1493-50923833213
SNP ascertainment bias in population genetic analyses: why it is important, and how to correct it.Lachance, Joseph; Tishkoff, Sarah ABioEssays : news and reviews in molecular, cellular and developmental biology2013 Sep780-623836388
DNA targeting specificity of RNA-guided Cas9 nucleases.Hsu, Patrick D; Scott, David A; Weinstein, Joshua A; Ran, F Ann; Konermann, Silvana; Agarwala, Vineeta; Li, Yinqing; Fine, Eli J; Wu, Xuebing; Shalem, Ophir; Cradick, Thomas J; Marraffini, Luciano A; Bao, Gang; Zhang, FengNature biotechnology2013 Sep827-3223873081
Local cortical dynamics of burst suppression in the anaesthetized brain.Lewis, Laura D; Ching, Shinung; Weiner, Veronica S; Peterfreund, Robert A; Eskandar, Emad N; Cash, Sydney S; Brown, Emery N; Purdon, Patrick LBrain : a journal of neurology2013 Sep2727-3723887187
Cross-correlation-based transverse flow measurements using optical resolution photoacoustic microscopy with a digital micromirror device.Liang, Jinyang; Zhou, Yong; Maslov, Konstantin I; Wang, Lihong VJournal of biomedical optics2013 Sep9600424002191
Noise-equivalent sensitivity of photoacoustics.Winkler, Amy M; Maslov, Konstantin; Wang, Lihong VJournal of biomedical optics2013 Sep9700324026425
Coordination of heart and lung co-development by a multipotent cardiopulmonary progenitor.Peng, Tien; Tian, Ying; Boogerd, Cornelis J; Lu, Min Min; Kadzik, Rachel S; Stewart, Kathleen M; Evans, Sylvia M; Morrisey, Edward ENature2013 Aug 29589-9223873040
Optical control of mammalian endogenous transcription and epigenetic states.Konermann, Silvana; Brigham, Mark D; Trevino, Alexandro E; Hsu, Patrick D; Heidenreich, Matthias; Cong, Le; Platt, Randall J; Scott, David A; Church, George M; Zhang, FengNature2013 Aug 22472-623877069
RNA Replicon Delivery via Lipid-Complexed PRINT Protein Particles.Xu, Jing; Luft, J Christopher; Yi, Xianwen; Tian, Shaomin; Owens, Gary; Wang, Jin; Johnson, Ashley; Berglund, Peter; Smith, Jonathan; Napier, Mary E; Desimone, Joseph MMolecular pharmaceutics2013 Aug 21NULL23924216
Optical-resolution photoacoustic microscopy: auscultation of biological systems at the cellular level.Hu, Song; Wang, Lihong VBiophysical journal2013 Aug 20841-723972836
Spinal projection neurons control turning behaviors in zebrafish.Huang, Kuo-Hua; Ahrens, Misha B; Dunn, Timothy W; Engert, FlorianCurrent biology : CB2013 Aug 191566-7323910662
Enhancement of photoacoustic tomography by ultrasonic computed tomography based on optical excitation of elements of a full-ring transducer array.Xia, Jun; Huang, Chao; Maslov, Konstantin; Anastasio, Mark A; Wang, Lihong VOptics letters2013 Aug 153140-324104670
Salmonella require the fatty acid regulator PPARýý for the establishment of a metabolic environment essential for long-term persistence.Eisele, Nicholas A; Ruby, Thomas; Jacobson, Amanda; Manzanillo, Paolo S; Cox, Jeffery S; Lam, Lilian; Mukundan, Lata; Chawla, Ajay; Monack, Denise MCell host & microbe2013 Aug 14171-8223954156
Allele-specific detection of single mRNA molecules in situ.Hansen, Clinton H; van Oudenaarden, AlexanderNature methods2013 Aug 11NULL23934076
HCN4 dynamically marks the first heart field and conduction system precursors.Liang, Xingqun; Wang, Gang; Lin, Lizhu; Lowe, Jennifer; Zhang, Qingquan; Bu, Lei; Chen, Yihan; Chen, Ju; Sun, Yunfu; Evans, Sylvia MCirculation research2013 Aug 2399-40723743334
Random-access optical-resolution photoacoustic microscopy using a digital micromirror device.Liang, Jinyang; Zhou, Yong; Winkler, Amy W; Wang, Lidai; Maslov, Konstantin I; Li, Chiye; Wang, Lihong VOptics letters2013 Aug 12683-623903111
Calibration-free quantification of absolute oxygen saturation based on the dynamics of photoacoustic signals.Xia, Jun; Danielli, Amos; Liu, Yan; Wang, Lidai; Maslov, Konstantin; Wang, Lihong VOptics letters2013 Aug 12800-323903146
Nanometre-scale thermometry in a living cell.Kucsko, G; Maurer, P C; Yao, N Y; Kubo, M; Noh, H J; Lo, P K; Park, H; Lukin, M DNature2013 Aug 154-823903748
Nanoelectronics-biology frontier: From nanoscopic probes for action potential recording in live cells to three-dimensional cyborg tissues.Duan, Xiaojie; Fu, Tian-Ming; Liu, Jia; Lieber, Charles MNano today2013 Aug 1351-37324073014
Encoding through patterns: regression tree-based neuronal population models.Haslinger, Robert; Pipa, Gordon; Lewis, Laura D; Nikolic, Danko; Williams, Ziv; Brown, EmeryNeural computation2013 Aug1953-9323607564
IL-7 production in murine lymphatic endothelial cells and induction in the setting of peripheral lymphopenia.Miller, Corey N; Hartigan-O'Connor, Dennis J; Lee, Myeong Sup; Laidlaw, Grace; Cornelissen, Ivo P; Matloubian, Mehrdad; Coughlin, Shaun R; McDonald, Donald M; McCune, Joseph MInternational immunology2013 Aug471-8323657000
The roles of monkey M1 neuron classes in movement preparation and execution.Kaufman, Matthew T; Churchland, Mark M; Shenoy, Krishna VJournal of neurophysiology2013 Aug817-2523699057
Untangling the web: the diverse functions of the PIWI/piRNA pathway.Mani, Sneha Ramesh; Juliano, Celina EMolecular reproduction and development2013 Aug632-6423712694
A closed-loop anesthetic delivery system for real-time control of burst suppression.Liberman, Max Y; Ching, Shinung; Chemali, Jessica; Brown, Emery NJournal of neural engineering2013 Aug4600423744607
The aging brain and anesthesia.Brown, Emery N; Purdon, Patrick LCurrent opinion in anaesthesiology2013 Aug414-923820102
TB: the Yin and Yang of lipid mediators.Tobin, David M; Ramakrishnan, LalitaCurrent opinion in pharmacology2013 Aug641-523849093
Issues related to development of antiepileptogenic therapies.Pitkanen, Asla; Nehlig, Astrid; Brooks-Kayal, Amy R; Dudek, F Edward; Friedman, Daniel; Galanopoulou, Aristea S; Jensen, Frances E; Kaminski, Rafal M; Kapur, Jaideep; Klitgaard, Henrik; Loscher, Wolfgang; Mody, Istvan; Schmidt, DieterEpilepsia2013 Aug35-4323909852
Issues related to symptomatic and disease-modifying treatments affecting cognitive and neuropsychiatric comorbidities of epilepsy.Brooks-Kayal, Amy R; Bath, Kevin G; Berg, Anne T; Galanopoulou, Aristea S; Holmes, Gregory L; Jensen, Frances E; Kanner, Andres M; O'Brien, Terence J; Whittemore, Vicky H; Winawer, Melodie R; Patel, Manisha; Scharfman, Helen EEpilepsia2013 Aug44-6023909853
Epilepsy biomarkers.Engel Jr, Jerome; Pitkanen, Asla; Loeb, Jeffrey A; Dudek, F Edward; Bertram 3rd, Edward H; Cole, Andrew J; Moshe, Solomon L; Wiebe, Samuel; Jensen, Frances E; Mody, Istvan; Nehlig, Astrid; Vezzani, AnnamariaEpilepsia2013 Aug61-923909854
RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee.Li-Byarlay, Hongmei; Li, Yang; Stroud, Hume; Feng, Suhua; Newman, Thomas C; Kaneda, Megan; Hou, Kirk K; Worley, Kim C; Elsik, Christine G; Wickline, Samuel A; Jacobsen, Steven E; Ma, Jian; Robinson, Gene EProceedings of the National Academy of Sciences of the United States of America2013 Jul 3012750-523852726
Expression of Isl1 during mouse development.Zhuang, Shaowei; Zhang, Qingquan; Zhuang, Tao; Evans, Sylvia M; Liang, Xingqun; Sun, YunfuGene expression patterns : GEP2013 Jul 29407-41223906961
A neurodegeneration-specific gene-expression signature of acutely isolated microglia from an amyotrophic lateral sclerosis mouse model.Chiu, Isaac M; Morimoto, Emiko T A; Goodarzi, Hani; Liao, Jennifer T; O'Keeffe, Sean; Phatnani, Hemali P; Muratet, Michael; Carroll, Michael C; Levy, Shawn; Tavazoie, Saeed; Myers, Richard M; Maniatis, TomCell reports2013 Jul 25385-40123850290
Expanding the structural diversity of polyketides by exploring the cofactor tolerance of an inline methyltransferase domain.Winter, Jaclyn M; Chiou, Grace; Bothwell, Ian R; Xu, Wei; Garg, Neil K; Luo, Minkui; Tang, YiOrganic letters2013 Jul 193774-723837609
Optical clearing-aided photoacoustic microscopy with enhanced resolution and imaging depth.Zhou, Yong; Yao, Junjie; Wang, Lihong VOptics letters2013 Jul 152592-523939121
Discovery of Protein-Protein Interaction Inhibitors of Replication Protein A.Patrone, James D; Kennedy, J Phillip; Frank, Andreas O; Feldkamp, Michael D; Vangamudi, Bhavatarini; Pelz, Nicholas F; Rossanese, Olivia W; Waterson, Alex G; Chazin, Walter J; Fesik, Stephen WACS medicinal chemistry letters2013 Jul 11601-60523914285
Dysbiosis of the gut microbiota is associated with hiv disease progression and tryptophan catabolism.Vujkovic-Cvijin, Ivan; Dunham, Richard M; Iwai, Shoko; Maher, Michael C; Albright, Rebecca G; Broadhurst, Mara J; Hernandez, Ryan D; Lederman, Michael M; Huang, Yong; Somsouk, Ma; Deeks, Steven G; Hunt, Peter W; Lynch, Susan V; McCune, Joseph MScience translational medicine2013 Jul 10193ra9123843452
Modular use of peripheral input channels tunes motion-detecting circuitry.Silies, Marion; Gohl, Daryl M; Fisher, Yvette E; Freifeld, Limor; Clark, Damon A; Clandinin, Thomas RNeuron2013 Jul 10111-2723849199
Cortical control of arm movements: a dynamical systems perspective.Shenoy, Krishna V; Sahani, Maneesh; Churchland, Mark MAnnual review of neuroscience2013 Jul 8337-5923725001
Specific kinematics and motor-related neurons for aversive chemotaxis in Drosophila.Gao, Xiaojing J; Potter, Christopher J; Gohl, Daryl M; Silies, Marion; Katsov, Alexander Y; Clandinin, Thomas R; Luo, LiqunCurrent biology : CB2013 Jul 81163-7223770185
Modeling Spatial Correlation of DNA Deformation: DNA Allostery in Protein Binding.Xu, Xinliang; Ge, Hao; Gu, Chan; Gao, Yi Qin; Wang, Siyuan S; Thio, Beng Joo Reginald; Hynes, James T; Xie, X Sunney; Cao, JianshuThe journal of physical chemistry. B2013 Jul 8NULL23795567
R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli.Wimberly, Hallie; Shee, Chandan; Thornton, P C; Sivaramakrishnan, Priya; Rosenberg, Susan M; Hastings, P JNature communications2013 Jul 5211523828459
Great ape genetic diversity and population history.Prado-Martinez, Javier; Sudmant, Peter H; Kidd, Jeffrey M; Li, Heng; Kelley, Joanna L; Lorente-Galdos, Belen; Veeramah, Krishna R; Woerner, August E; O'Connor, Timothy D; Santpere, Gabriel; Cagan, Alexander; Theunert, Christoph; Casals, Ferran; Laayouni, Nature2013 Jul 3NULL23823723
Thalamocortical mechanisms for the anteriorization of alpha rhythms during propofol-induced unconsciousness.Vijayan, Sujith; Ching, Shinung; Purdon, Patrick L; Brown, Emery N; Kopell, Nancy JThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Jul 311070-523825412
A Reactive Oxygen Species (ROS)-Responsive Polymer for Safe, Efficient, and Targeted Gene Delivery in Cancer Cells.Shim, Min Suk; Xia, YounanAngewandte Chemie (International ed. in English)2013 Jul 16926-923716349
Cell-based measures of viral persistence are associated with immune activation and programmed cell death protein 1 (PD-1)-expressing CD4+ T cells.Hatano, Hiroyu; Jain, Vivek; Hunt, Peter W; Lee, Tzong-Hae; Sinclair, Elizabeth; Do, Tri D; Hoh, Rebecca; Martin, Jeffrey N; McCune, Joseph M; Hecht, Frederick; Busch, Michael P; Deeks, Steven GThe Journal of infectious diseases2013 Jul50-623089590
The relation between valence and arousal in subjective experience.Kuppens, Peter; Tuerlinckx, Francis; Russell, James A; Barrett, Lisa FeldmanPsychological bulletin2013 Jul917-4023231533
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.Gaj, Thomas; Gersbach, Charles A; Barbas 3rd, Carlos FTrends in biotechnology2013 Jul397-40523664777
The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow.Blinder, Pablo; Tsai, Philbert S; Kaufhold, John P; Knutsen, Per M; Suhl, Harry; Kleinfeld, DavidNature neuroscience2013 Jul889-9723749145
A bacterial export system for generating extracellular amyloid aggregates.Sivanathan, Viknesh; Hochschild, AnnNature protocols2013 Jul1381-9023787895
Engineering customized TALE nucleases (TALENs) and TALE transcription factors by fast ligation-based automatable solid-phase high-throughput (FLASH) assembly.Reyon, Deepak; Maeder, Morgan L; Khayter, Cyd; Tsai, Shengdar Q; Foley, Jonathan E; Sander, Jeffry D; Joung, J KeithCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]2013 JulUnit 12.1623821439
Stochastic cytokine expression induces mixed T helper cell States.Fang, Miaoqing; Xie, Huangming; Dougan, Stephanie K; Ploegh, Hidde; van Oudenaarden, AlexanderPLoS biology2013 Jule100161823935453
Choroid-plexus-derived Otx2 homeoprotein constrains adult cortical plasticity.Spatazza, Julien; Lee, Henry H C; Di Nardo, Ariel A; Tibaldi, Lorenzo; Joliot, Alain; Hensch, Takao K; Prochiantz, AlainCell reports2013 Jun 271815-2323770240
Homeostatic regulation of dendritic dynamics in a motor map in vivo.Kishore, Sandeep; Fetcho, Joseph RNature communications2013 Jun 27208623803587
Future of the particle replication in nonwetting templates (PRINT) technology.Xu, Jing; Wong, Dominica H C; Byrne, James D; Chen, Kai; Bowerman, Charles; DeSimone, Joseph MAngewandte Chemie (International ed. in English)2013 Jun 246580-923670869
High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells.Fu, Yanfang; Foden, Jennifer A; Khayter, Cyd; Maeder, Morgan L; Reyon, Deepak; Joung, J Keith; Sander, Jeffry DNature biotechnology2013 Jun 23NULL23792628
GABAergic lateral interactions tune the early stages of visual processing in Drosophila.Freifeld, Limor; Clark, Damon A; Schnitzer, Mark J; Horowitz, Mark A; Clandinin, Thomas RNeuron2013 Jun 191075-8923791198
piggyBac transposase tools for genome engineering.Li, Xianghong; Burnight, Erin R; Cooney, Ashley L; Malani, Nirav; Brady, Troy; Sander, Jeffry D; Staber, Janice; Wheelan, Sarah J; Joung, J Keith; McCray Jr, Paul B; Bushman, Frederic D; Sinn, Patrick L; Craig, Nancy LProceedings of the National Academy of Sciences of the United States of America2013 Jun 18E2279-8723723351
Photoacoustic and optical coherence tomography of epilepsy with high temporal and spatial resolution and dual optical contrasts.Tsytsarev, Vassiliy; Rao, Bin; Maslov, Konstantin I; Li, Li; Wang, Lihong VJournal of neuroscience methods2013 Jun 15142-523603664
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.Shalek, Alex K; Satija, Rahul; Adiconis, Xian; Gertner, Rona S; Gaublomme, Jellert T; Raychowdhury, Raktima; Schwartz, Schraga; Yosef, Nir; Malboeuf, Christine; Lu, Diana; Trombetta, John J; Gennert, Dave; Gnirke, Andreas; Goren, Alon; Hacohen, Nir; LevinNature2013 Jun 13236-4023685454
Real-time Closed-loop Control in a Rodent Model of Medically Induced Coma Using Burst Suppression.Ching, Shinung; Liberman, Max Y; Chemali, Jessica J; Westover, M Brandon; Kenny, Jonathan; Solt, Ken; Purdon, Patrick L; Brown, Emery NAnesthesiology2013 Jun 13NULL23770601
Synthetic nanoelectronic probes for biological cells and tissues.Tian, Bozhi; Lieber, Charles MAnnual review of analytical chemistry (Palo Alto, Calif.)2013 Jun 1231-5123451719
Microbial persistence and the road to drug resistance.Cohen, Nadia R; Lobritz, Michael A; Collins, James JCell host & microbe2013 Jun 12632-4223768488
Eosinophils secrete IL-4 to facilitate liver regeneration.Goh, Y P Sharon; Henderson, Neil C; Heredia, Jose E; Red Eagle, Alex; Odegaard, Justin I; Lehwald, Nadja; Nguyen, Khoa D; Sheppard, Dean; Mukundan, Lata; Locksley, Richard M; Chawla, AjayProceedings of the National Academy of Sciences of the United States of America2013 Jun 119914-923716700
Discovery of Cryptic Polyketide Metabolites from Dermatophytes Using Heterologous Expression in Aspergillus nidulans.Yin, Wen-Bing; Chooi, Yit Heng; Smith, Adam R; Cacho, Ralph A; Hu, Youcai; White, Theodore C; Tang, YiACS synthetic biology2013 Jun 1123758576
Computational analysis of anti-HIV-1 antibody neutralization panel data to identify potential functional epitope residues.West Jr, Anthony P; Scharf, Louise; Horwitz, Joshua; Klein, Florian; Nussenzweig, Michel C; Bjorkman, Pamela JProceedings of the National Academy of Sciences of the United States of America2013 Jun 1023754383
Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome.Modi, Sheetal R; Lee, Henry H; Spina, Catherine S; Collins, James JNature2013 Jun 9NULL23748443
Activity-dependent gene expression in honey bee mushroom bodies in response to orientation flight.Lutz, Claudia C; Robinson, Gene EThe Journal of experimental biology2013 Jun 12031-823678099
Large-scale brain networks in affective and social neuroscience: towards an integrative functional architecture of the brain.Barrett, Lisa Feldman; Satpute, Ajay BhaskarCurrent opinion in neurobiology2013 Jun361-7223352202
TALEN-based Gene Correction for Epidermolysis Bullosa.Osborn, Mark J; Starker, Colby G; McElroy, Amber N; Webber, Beau R; Riddle, Megan J; Xia, Lily; Defeo, Anthony P; Gabriel, Richard; Schmidt, Manfred; Von Kalle, Christof; Carlson, Daniel F; Maeder, Morgan L; Joung, J Keith; Wagner, John E; Voytas, Daniel Molecular therapy : the journal of the American Society of Gene Therapy2013 Jun1151-923546300
Design and validation of a real-time spiking-neural-network decoder for brain-machine interfaces.Dethier, Julie; Nuyujukian, Paul; Ryu, Stephen I; Shenoy, Krishna V; Boahen, KwabenaJournal of neural engineering2013 Jun03600823574919
Design and validation of a real-time spiking-neural-network decoder for brain-machine interfaces.Dethier, Julie; Nuyujukian, Paul; Ryu, Stephen I; Shenoy, Krishna V; Boahen, KwabenaJournal of neural engineering2013 Jun3600823574919
Neural evidence that human emotions share core affective properties.Wilson-Mendenhall, Christine D; Barrett, Lisa Feldman; Barsalou, Lawrence WPsychological science2013 Jun947-5623603916
Progress in gene therapy for neurological disorders.Simonato, Michele; Bennett, Jean; Boulis, Nicholas M; Castro, Maria G; Fink, David J; Goins, William F; Gray, Steven J; Lowenstein, Pedro R; Vandenberghe, Luk H; Wilson, Thomas J; Wolfe, John H; Glorioso, Joseph CNature reviews. Neurology2013 Jun29823670108
Neural control of sexually dimorphic behaviors.Manoli, Devanand S; Fan, Pu; Fraser, Eleanor J; Shah, Nirao MCurrent opinion in neurobiology2013 Jun330-823680385
The NADPH metabolic network regulates human ýýB-crystallin cardiomyopathy and reductive stress in Drosophila melanogaster.Xie, Heng B; Cammarato, Anthony; Rajasekaran, Namakkal S; Zhang, Huali; Suggs, Jennifer A; Lin, Ho-Chen; Bernstein, Sanford I; Benjamin, Ivor J; Golic, Kent GPLoS genetics2013 June100354423818860
Mapping and cracking sensorimotor circuits in genetic model organisms.Clark, Damon A; Freifeld, Limor; Clandinin, Thomas RNeuron2013 May 22583-9523719159
Evolutionary dynamics and information hierarchies in biological systems.Walker, Sara Imari; Callahan, Benjamin J; Arya, Gaurav; Barry, J David; Bhattacharya, Tanmoy; Grigoryev, Sergei; Pellegrini, Matteo; Rippe, Karsten; Rosenberg, Susan MAnnals of the New York Academy of Sciences2013 May 2023691975
Comparative analysis of RNA sequencing methods for degraded or low-input samples.Adiconis, Xian; Borges-Rivera, Diego; Satija, Rahul; Deluca, David S; Busby, Michele A; Berlin, Aaron M; Sivachenko, Andrey; Thompson, Dawn Anne; Wysoker, Alec; Fennell, Timothy; Gnirke, Andreas; Pochet, Nathalie; Regev, Aviv; Levin, Joshua ZNature methods2013 May 1923685885
Fragment-based drug discovery using NMR spectroscopy.Harner, Mary J; Frank, Andreas O; Fesik, Stephen WJournal of biomolecular NMR2013 May 1823686385
An unsolved mystery: The target-recognizing RNA species of microRNA genes.Chen, Chang-ZhengBiochimie2013 May 1423685275
Statistical mechanics of Monod-Wyman-Changeux (MWC) models.Marzen, Sarah; Garcia, Hernan G; Phillips, RobJournal of molecular biology2013 May 131433-6023499654
Physiology: Inflammation links ageing to the brain.Gabuzda, Dana; Yankner, Bruce ANature2013 May 9197-823636321
One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering.Wang, Haoyi; Yang, Hui; Shivalila, Chikdu S; Dawlaty, Meelad M; Cheng, Albert W; Zhang, Feng; Jaenisch, RudolfCell2013 May 9910-823643243
Sexually dimorphic neurons in the ventromedial hypothalamus govern mating in both sexes and aggression in males.Yang, Cindy F; Chiang, Michael C; Gray, Daniel C; Prabhakaran, Mahalakshmi; Alvarado, Maricruz; Juntti, Scott A; Unger, Elizabeth K; Wells, James A; Shah, Nirao MCell2013 May 9896-90923663785
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.Gaj, Thomas; Gersbach, Charles A; Barbas 3rd, Carlos FTrends in biotechnology2013 May 823664777
The Glove-like Structure of the Conserved Membrane Protein TatC Provides Insight into Signal Sequence Recognition in Twin-Arginine Translocation.Ramasamy, Sureshkumar; Abrol, Ravinder; Suloway, Christian J M; Clemons Jr, William MStructure (London, England : 1993)2013 May 7777-8823583035
Endothelial barrier disruption and recovery is controlled by substrate stiffness.Birukova, Anna A; Tian, Xinyong; Cokic, Ivan; Beckham, Yvonne; Gardel, Margaret L; Birukov, Konstantin GMicrovascular research2013 May50-723296034
Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.Gebhardt, J Christof M; Suter, David M; Roy, Rahul; Zhao, Ziqing W; Chapman, Alec R; Basu, Srinjan; Maniatis, Tom; Xie, X SunneyNature methods2013 May421-623524394
Regulation of immune responses and tolerance: the microRNA perspective.Chen, Chang-Zheng; Schaffert, Steven; Fragoso, Rita; Loh, ChristinaImmunological reviews2013 May112-2823550642
Progress in gene therapy for neurological disorders.Simonato, Michele; Bennett, Jean; Boulis, Nicholas M; Castro, Maria G; Fink, David J; Goins, William F; Gray, Steven J; Lowenstein, Pedro R; Vandenberghe, Luk H; Wilson, Thomas J; Wolfe, John H; Glorioso, Joseph CNature reviews. Neurology2013 May277-9123609618
Connection between Oligomeric State and Gating Characteristics of Mechanosensitive Ion Channels.Haselwandter, Christoph A; Phillips, RobPLoS computational biology2013 Maye100305523696720
Surpassing fundamental limits of oscillators using nonlinear resonators.Villanueva, L G; Kenig, E; Karabalin, R B; Matheny, M H; Lifshitz, Ron; Cross, M C; Roukes, M LPhysical review letters2013 Apr 2617720823679770
Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1.Wu, Chuan; Yosef, Nir; Thalhamer, Theresa; Zhu, Chen; Xiao, Sheng; Kishi, Yasuhiro; Regev, Aviv; Kuchroo, Vijay KNature2013 Apr 25513-723467085
Dynamic regulatory network controlling TH17 cell differentiation.Yosef, Nir; Shalek, Alex K; Gaublomme, Jellert T; Jin, Hulin; Lee, Youjin; Awasthi, Amit; Wu, Chuan; Karwacz, Katarzyna; Xiao, Sheng; Jorgolli, Marsela; Gennert, David; Satija, Rahul; Shakya, Arvind; Lu, Diana Y; Trombetta, John J; Pillai, Meenu R; RatcliNature2013 Apr 25461-823467089
Altered social behavior and neuronal development in mice lacking the Uba6-Use1 ubiquitin transfer system.Lee, Peter C W; Dodart, Jean-Cosme; Aron, Liviu; Finley, Lydia W; Bronson, Roderick T; Haigis, Marcia C; Yankner, Bruce A; Harper, J WadeMolecular cell2013 Apr 25172-8423499007
TNF dually mediates resistance and susceptibility to mycobacteria via mitochondrial reactive oxygen species.Roca, Francisco J; Ramakrishnan, LalitaCell2013 Apr 25521-3423582643
Macrophage biology in development, homeostasis and disease.Wynn, Thomas A; Chawla, Ajay; Pollard, Jeffrey WNature2013 Apr 25445-5523619691
Generating Better Medicines for Cancer.Dunn, Stuart S; Byrne, James D; Perry, Jillian L; Chen, Kai; Desimone, Joseph MACS macro letters2013 Apr 24393-39723772351
Multifunctional three-dimensional macroporous nanoelectronic networks for smart materials.Liu, Jia; Xie, Chong; Dai, Xiaochuan; Jin, Lihua; Zhou, Wei; Lieber, Charles MProceedings of the National Academy of Sciences of the United States of America2013 Apr 236694-923569270
Functional inhibition of UQCRB suppresses angiogenesis in zebrafish.Cho, Yoon Sun; Jung, Hye Jin; Seok, Seung Hyeok; Payumo, Alexander Y; Chen, James K; Kwon, Ho JeongBiochemical and biophysical research communications2013 Apr 19396-40023454382
The immune system as a sensor of the metabolic state.Odegaard, Justin I; Chawla, AjayImmunity2013 Apr 18644-5423601683
Facile and stabile linkages through tyrosine: bioconjugation strategies with the tyrosine-click reaction.Ban, Hitoshi; Nagano, Masanobu; Gavrilyuk, Julia; Hakamata, Wataru; Inokuma, Tsubasa; Barbas 3rd, Carlos FBioconjugate chemistry2013 Apr 17520-3223534985
Higher frequency of genetic variants conferring increased risk for ADRs for commonly used drugs treating cancer, AIDS and tuberculosis in persons of African descent.Aminkeng, F; Ross, C J D; Rassekh, S R; Brunham, L R; Sistonen, J; Dube, M-P; Ibrahim, M; Nyambo, T B; Omar, S A; Froment, A; Bodo, J-M; Tishkoff, S; Carleton, B C; Hayden, M RThe pharmacogenomics journal2013 Apr 1623588107
Type 2 innate signals stimulate fibro/adipogenic progenitors to facilitate muscle regeneration.Heredia, Jose E; Mukundan, Lata; Chen, Francis M; Mueller, Alisa A; Deo, Rahul C; Locksley, Richard M; Rando, Thomas A; Chawla, AjayCell2013 Apr 11376-8823582327
Nonlinear mode-coupling in nanomechanical systems.Matheny, M H; Villanueva, L G; Karabalin, R B; Sader, J E; Roukes, M LNano letters2013 Apr 101622-623496001
Monitoring of post-translational modification dynamics with genetically encoded fluorescent reporters.Hertel, Fabian; Zhang, JinBiopolymers2013 Apr 10NULL23576192
Hunger-promoting hypothalamic neurons modulate effector and regulatory T-cell responses.Matarese, Giuseppe; Procaccini, Claudio; Menale, Ciro; Kim, Jae Geun; Kim, Jung Dae; Diano, Sabrina; Diano, Nadia; De Rosa, Veronica; Dietrich, Marcelo O; Horvath, Tamas LProceedings of the National Academy of Sciences of the United States of America2013 Apr 96193-823530205
A plasmon-assisted optofluidic (PAOF) system for measuring the photothermal conversion efficiencies of gold nanostructures and controlling an electrical switch.Zeng, Jie; Goldfeld, David; Xia, YounanAngewandte Chemie (International ed. in English)2013 Apr 84169-7323494970
The proteomic response to mutants of the Escherichia coli RNA degradosome.Zhou, Li; Zhang, Ang B; Wang, Rong; Marcotte, Edward M; Vogel, ChristineMolecular bioSystems2013 Apr 5750-723403814
How bacteria survive an acid trip.Hingorani, Karan S; Gierasch, Lila MProceedings of the National Academy of Sciences of the United States of America2013 Apr 25279-8023530238
A comprehensive approach to zinc-finger recombinase customization enables genomic targeting in human cells.Gaj, Thomas; Mercer, Andrew C; Sirk, Shannon J; Smith, Heather L; Barbas 3rd, Carlos FNucleic acids research2013 Apr 13937-4623393187
Inferring evoked brain connectivity through adaptive perturbation.Lepage, Kyle Q; Ching, ShiNung; Kramer, Mark AJournal of computational neuroscience2013 Apr303-1822990598
Assessing the effects of pharmacological agents on respiratory dynamics using time-series modeling.Wong, Kin Foon Kevin; Gong, Jen J; Cotten, Joseph F; Solt, Ken; Brown, Emery NIEEE transactions on bio-medical engineering2013 Apr1118-2523193230
Beyond transposons: the epigenetic and somatic functions of the Piwi-piRNA mechanism.Peng, Jamy C; Lin, HaifanCurrent opinion in cell biology2013 Apr190-423465540
Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli.Gat-Viks, Irit; Chevrier, Nicolas; Wilentzik, Roni; Eisenhaure, Thomas; Raychowdhury, Raktima; Steuerman, Yael; Shalek, Alex K; Hacohen, Nir; Amit, Ido; Regev, AvivNature biotechnology2013 Apr342-923503680
The fumagillin biosynthetic gene cluster in Aspergillus fumigatus encodes a cryptic terpene cyclase involved in the formation of ýý-trans-bergamotene.Lin, Hsiao-Ching; Chooi, Yit-Heng; Dhingra, Sourabh; Xu, Wei; Calvo, Ana M; Tang, YiJournal of the American Chemical Society2013 Mar 274616-923488861
Comparison study of gold nanohexapods, nanorods, and nanocages for photothermal cancer treatment.Wang, Yucai; Black, Kvar C L; Luehmann, Hannah; Li, Weiyang; Zhang, Yu; Cai, Xin; Wan, Dehui; Liu, Si-Yun; Li, Max; Kim, Paul; Li, Zhi-Yuan; Wang, Lihong V; Liu, Yongjian; Xia, YounanACS nano2013 Mar 262068-7723383982
Mammalian target of rapamycin complex 1 activation negatively regulates Polo-like kinase 2-mediated homeostatic compensation following neonatal seizures.Sun, Hongyu; Kosaras, Bela; Klein, Peter M; Jensen, Frances EProceedings of the National Academy of Sciences of the United States of America2013 Mar 265199-20423479645
Nanotools for neuroscience and brain activity mapping.Alivisatos, A Paul; Andrews, Anne M; Boyden, Edward S; Chun, Miyoung; Church, George M; Deisseroth, Karl; Donoghue, John P; Fraser, Scott E; Lippincott-Schwartz, Jennifer; Looger, Loren L; Masmanidis, Sotiris; McEuen, Paul L; Nurmikko, Arto V; Park, HongkACS nano2013 Mar 261850-6623514423
Molecular tools for chemical biotechnology.Galanie, Stephanie; Siddiqui, Michael S; Smolke, Christina DCurrent opinion in biotechnology2013 Mar 2223528237
Global analysis of phosphorylation networks in humans.Hu, Jianfei; Rho, Hee-Sool; Newman, Robert H; Hwang, Woochang; Neiswinger, John; Zhu, Heng; Zhang, Jin; Qian, JiangBiochimica et biophysica acta2013 Mar 2123524292
Global analysis of phosphorylation networks in humans.Hu, Jianfei; Rho, Hee-Sool; Newman, Robert H; Hwang, Woochang; Neiswinger, John; Zhu, Heng; Zhang, Jin; Qian, JiangBiochimica et biophysica acta2013 Mar 21NULL23524292
Reductive stress linked to small HSPs, G6PD, and Nrf2 pathways in heart disease.Brewer, Alison C; Mustafi, Soumyajit Banerjee; Murray, Thomas V A; Rajasekaran, Namakkal Soorappan; Benjamin, Ivor JAntioxidants & redox signaling2013 Mar 201114-2722938199
EcdGHK are three tailoring iron oxygenases for amino acid building blocks of the echinocandin scaffold.Jiang, Wei; Cacho, Ralph A; Chiou, Grace; Garg, Neil K; Tang, Yi; Walsh, Christopher TJournal of the American Chemical Society2013 Mar 204457-6623451921
Electroencephalogram signatures of loss and recovery of consciousness from propofol.Purdon, Patrick L; Pierce, Eric T; Mukamel, Eran A; Prerau, Michael J; Walsh, John L; Wong, Kin Foon K; Salazar-Gomez, Andres F; Harrell, Priscilla G; Sampson, Aaron L; Cimenser, Aylin; Ching, ShiNung; Kopell, Nancy J; Tavares-Stoeckel, Casie; Habeeb, KatProceedings of the National Academy of Sciences of the United States of America2013 Mar 19E1142-5123487781
Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.Rhee, Hyun-Woo; Zou, Peng; Udeshi, Namrata D; Martell, Jeffrey D; Mootha, Vamsi K; Carr, Steven A; Ting, Alice YScience (New York, N.Y.)2013 Mar 151328-3123371551
Neuroscience. The brain activity map.Alivisatos, A Paul; Chun, Miyoung; Church, George M; Deisseroth, Karl; Donoghue, John P; Greenspan, Ralph J; McEuen, Paul L; Roukes, Michael L; Sejnowski, Terrence J; Weiss, Paul S; Yuste, RafaelScience (New York, N.Y.)2013 Mar 151284-523470729
High-sensitivity ultrasound-modulated optical tomography with a photorefractive polymer.Suzuki, Yuta; Lai, Puxiang; Xu, Xiao; Wang, LihongOptics letters2013 Mar 15899-90123503253
A major epigenetic programming mechanism guided by piRNAs.Huang, Xiao A; Yin, Hang; Sweeney, Sarah; Raha, Debasish; Snyder, Michael; Lin, HaifanDevelopmental cell2013 Mar 11502-1623434410
Early folding events protect aggregation-prone regions of a ýý-rich protein.Budyak, Ivan L; Krishnan, Beena; Marcelino-Cruz, Anna M; Ferrolino, Mylene C; Zhuravleva, Anastasia; Gierasch, Lila MStructure (London, England : 1993)2013 Mar 5476-8523454187
Photoacoustic Microscopy in Tissue Engineering.Cai, Xin; Zhang, Yu Shrike; Xia, Younan; Wang, Lihong VMaterials today (Kidlington, England)2013 Mar 167-7723766667
Investigation of neovascularization in three-dimensional porous scaffolds in vivo by a combination of multiscale photoacoustic microscopy and optical coherence tomography.Cai, Xin; Zhang, Yu; Li, Li; Choi, Sung-Wook; MacEwan, Matthew R; Yao, Junjie; Kim, Chulhong; Xia, Younan; Wang, Lihong VTissue engineering. Part C, Methods2013 Mar196-20422838500
Affective value and associative processing share a cortical substrate.Shenhav, Amitai; Barrett, Lisa Feldman; Bar, MosheCognitive, affective & behavioral neuroscience2013 Mar46-5923090717
Multiplexed visualization of dynamic signaling networks using genetically encoded fluorescent protein-based biosensors.Depry, Charlene; Mehta, Sohum; Zhang, JinPflugers Archiv : European journal of physiology2013 Mar373-8123138230
Transcriptional reprogramming of mature CD4ýýý helper T cells generates distinct MHC class II-restricted cytotoxic T lymphocytes.Mucida, Daniel; Husain, Mohammad Mushtaq; Muroi, Sawako; van Wijk, Femke; Shinnakasu, Ryo; Naoe, Yoshinori; Reis, Bernardo Sgarbi; Huang, Yujun; Lambolez, Florence; Docherty, Michael; Attinger, Antoine; Shui, Jr-Wen; Kim, Gisen; Lena, Christopher J; SakagNature immunology2013 Mar281-923334788
Efficient genome editing in zebrafish using a CRISPR-Cas system.Hwang, Woong Y; Fu, Yanfang; Reyon, Deepak; Maeder, Morgan L; Tsai, Shengdar Q; Sander, Jeffry D; Peterson, Randall T; Yeh, J-R Joanna; Joung, J KeithNature biotechnology2013 Mar227-923360964
RNA-guided editing of bacterial genomes using CRISPR-Cas systems.Jiang, Wenyan; Bikard, David; Cox, David; Zhang, Feng; Marraffini, Luciano ANature biotechnology2013 Mar233-923360965
Long-term dynamics of CA1 hippocampal place codes.Ziv, Yaniv; Burns, Laurie D; Cocker, Eric D; Hamel, Elizabeth O; Ghosh, Kunal K; Kitch, Lacey J; El Gamal, Abbas; Schnitzer, Mark JNature neuroscience2013 Mar264-623396101
Robust, synergistic regulation of human gene expression using TALE activators.Maeder, Morgan L; Linder, Samantha J; Reyon, Deepak; Angstman, James F; Fu, Yanfang; Sander, Jeffry D; Joung, J KeithNature methods2013 Mar243-523396285
Bridging the transgenerational gap with epigenetic memory.Lim, Jana P; Brunet, AnneTrends in genetics : TIG2013 Mar176-8623410786
Reflection-mode multifocal optical-resolution photoacoustic microscopy.Li, Guo; Maslov, Konstantin I; Wang, Lihong VJournal of biomedical optics2013 Mar3050123446704
Identification of nonvisual photomotor response cells in the vertebrate hindbrain.Kokel, David; Dunn, Timothy W; Ahrens, Misha B; Alshut, Rudiger; Cheung, Chung Yan J; Saint-Amant, Louis; Bruni, Giancarlo; Mateus, Rita; van Ham, Tjakko J; Shiraki, Tomoya; Fukada, Yoshitaka; Kojima, Daisuke; Yeh, Jing-Ruey J; Mikut, Ralf; von Lintig, JoThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Feb 273834-4323447595
Simultaneous top-down modulation of the primary somatosensory cortex and thalamic nuclei during active tactile discrimination.Pais-Vieira, Miguel; Lebedev, Mikhail A; Wiest, Michael C; Nicolelis, Miguel A LThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Feb 274076-9323447616
Fungicidal drugs induce a common oxidative-damage cellular death pathway.Belenky, Peter; Camacho, Diogo; Collins, James JCell reports2013 Feb 21350-823416050
Multiplex genome engineering using CRISPR/Cas systems.Cong, Le; Ran, F Ann; Cox, David; Lin, Shuailiang; Barretto, Robert; Habib, Naomi; Hsu, Patrick D; Wu, Xuebing; Jiang, Wenyan; Marraffini, Luciano A; Zhang, FengScience (New York, N.Y.)2013 Feb 15819-2323287718
Genome mining of a prenylated and immunosuppressive polyketide from pathogenic fungi.Chooi, Yit-Heng; Fang, Jinxu; Liu, Hong; Filler, Scott G; Wang, Pin; Tang, YiOrganic letters2013 Feb 15780-323368997
Probing allostery through DNA.Kim, Sangjin; Brostromer, Erik; Xing, Dong; Jin, Jianshi; Chong, Shasha; Ge, Hao; Wang, Siyuan; Gu, Chan; Yang, Lijiang; Gao, Yi Qin; Su, Xiao-dong; Sun, Yujie; Xie, X SunneyScience (New York, N.Y.)2013 Feb 15816-923413354
The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-ýý locus.Gomez, J Antonio; Wapinski, Orly L; Yang, Yul W; Bureau, Jean-Francois; Gopinath, Smita; Monack, Denise M; Chang, Howard Y; Brahic, Michel; Kirkegaard, KarlaCell2013 Feb 14743-5423415224
Design and synthesis of diverse functional kinked nanowire structures for nanoelectronic bioprobes.Xu, Lin; Jiang, Zhe; Qing, Quan; Mai, Liqiang; Zhang, Qingjie; Lieber, Charles MNano letters2013 Feb 13746-5123273386
Radioluminescent gold nanocages with controlled radioactivity for real-time in vivo imaging.Wang, Yucai; Liu, Yongjian; Luehmann, Hannah; Xia, Xiaohu; Wan, Dehui; Cutler, Cathy; Xia, YounanNano letters2013 Feb 13581-523360442
Synthesis of Ag nanocubes 18-32 nm in edge length: the effects of polyol on reduction kinetics, size control, and reproducibility.Wang, Yi; Zheng, Yiqun; Huang, Cheng Zhi; Xia, YounanJournal of the American Chemical Society2013 Feb 61941-5123317148
Investigation of fungal iterative polyketide synthase functions using partially assembled intermediates.Gao, Zhizeng; Wang, Jingjing; Norquay, Amy K; Qiao, Kangjian; Tang, Yi; Vederas, John CJournal of the American Chemical Society2013 Feb 61735-823356934
In vitro human corticogenesis.Wang, Yanling; Dolmetsch, RicardoNeuron2013 Feb 6379-8123395367
Mechanistic evaluation of the pros and cons of digital RT-LAMP for HIV-1 viral load quantification on a microfluidic device and improved efficiency via a two-step digital protocol.Sun, Bing; Shen, Feng; McCalla, Stephanie E; Kreutz, Jason E; Karymov, Mikhail A; Ismagilov, Rustem FAnalytical chemistry2013 Feb 51540-623324061
Engineering a BCR-ABL-activated caspase for the selective elimination of leukemic cells.Kurokawa, Manabu; Ito, Takahiro; Yang, Chih-Sheng; Zhao, Chen; Macintyre, Andrew N; Rizzieri, David A; Rathmell, Jeffrey C; Deininger, Michael W; Reya, Tannishtha; Kornbluth, SallyProceedings of the National Academy of Sciences of the United States of America2013 Feb 52300-523324740
Physics. Measuring mass in seconds.Debs, John E; Robins, Nicholas P; Close, John DScience (New York, N.Y.)2013 Feb 1532-323372004
Systematic identification of signal-activated stochastic gene regulation.Neuert, Gregor; Munsky, Brian; Tan, Rui Zhen; Teytelman, Leonid; Khammash, Mustafa; van Oudenaarden, AlexanderScience (New York, N.Y.)2013 Feb 1584-723372015
Preclinical evaluation of HIV eradication strategies in the simian immunodeficiency virus-infected rhesus macaque: a pilot study testing inhibition of indoleamine 2,3-dioxygenase.Dunham, Richard M; Gordon, Shari N; Vaccari, Monica; Piatak, Michael; Huang, Yong; Deeks, Steven G; Lifson, Jeffrey; Franchini, Genoveffa; McCune, Joseph MAIDS research and human retroviruses2013 Feb207-1422924680
Single-cell analysis of ribonucleotide reductase transcriptional and translational response to DNA damage.Mazumder, Aprotim; Tummler, Katja; Bathe, Mark; Samson, Leona DMolecular and cellular biology2013 Feb635-4223184665
A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.Bienko, Magda; Crosetto, Nicola; Teytelman, Leonid; Klemm, Sandy; Itzkovitz, Shalev; van Oudenaarden, AlexanderNature methods2013 Feb122-423263692
Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production.Brynildsen, Mark P; Winkler, Jonathan A; Spina, Catherine S; MacDonald, I Cody; Collins, James JNature biotechnology2013 Feb160-523292609
Modeling Timothy syndrome with iPS cells.Yazawa, Masayuki; Dolmetsch, Ricardo EJournal of cardiovascular translational research2013 Feb1-923299782
Timothy syndrome is associated with activity-dependent dendritic retraction in rodent and human neurons.Krey, Jocelyn F; Pasca, Sergiu P; Shcheglovitov, Aleksandr; Yazawa, Masayuki; Schwemberger, Rachel; Rasmusson, Randall; Dolmetsch, Ricardo ENature neuroscience2013 Feb201-923313911
Hypothalamic control of energy balance: insights into the role of synaptic plasticity.Dietrich, Marcelo O; Horvath, Tamas LTrends in neurosciences2013 Feb65-7323318157
Function of Piwi, a nuclear Piwi/Argonaute protein, is independent of its slicer activity.Darricarrere, Nicole; Liu, Na; Watanabe, Toshiaki; Lin, HaifanProceedings of the National Academy of Sciences of the United States of America2013 Jan 221297-30223297219
Quantitative analysis of the fate of gold nanocages in vitro and in vivo after uptake by U87-MG tumor cells.Cho, Eun Chul; Zhang, Yu; Cai, Xin; Moran, Christine M; Wang, Lihong V; Xia, YounanAngewandte Chemie (International ed. in English)2013 Jan 211152-523225223
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus.Graziano, Vito; McGrath, William J; Suomalainen, Maarit; Greber, Urs F; Freimuth, Paul; Blainey, Paul C; Luo, Guobin; Xie, X Sunney; Mangel, Walter FThe Journal of biological chemistry2013 Jan 182059-6723043136
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction.Graziano, Vito; Luo, Guobin; Blainey, Paul C; Perez-Berna, Ana J; McGrath, William J; Flint, S Jane; San Martin, Carmen; Xie, X Sunney; Mangel, Walter FThe Journal of biological chemistry2013 Jan 182068-8023043137
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.Blainey, Paul C; Graziano, Vito; Perez-Berna, Ana J; McGrath, William J; Flint, S Jane; San Martin, Carmen; Xie, X Sunney; Mangel, Walter FThe Journal of biological chemistry2013 Jan 182092-10223043138
Controlling enzymatic action in living cells with a kinase-inducible bimolecular switch.Sample, Vedangi; Ni, Qiang; Mehta, Sohum; Inoue, Takanari; Zhang, JinACS chemical biology2013 Jan 18116-2123072367
Transcriptional silencing by single-stranded RNAs targeting a noncoding RNA that overlaps a gene promoter.Matsui, Masayuki; Prakash, Thazha P; Corey, David RACS chemical biology2013 Jan 18122-623082936
Pleiotropic actions of insulin resistance and inflammation in metabolic homeostasis.Odegaard, Justin I; Chawla, AjayScience (New York, N.Y.)2013 Jan 11172-723307735
Discovery of potent myeloid cell leukemia 1 (Mcl-1) inhibitors using fragment-based methods and structure-based design.Friberg, Anders; Vigil, Dominico; Zhao, Bin; Daniels, R Nathan; Burke, Jason P; Garcia-Barrantes, Pedro M; Camper, DeMarco; Chauder, Brian A; Lee, Taekyu; Olejniczak, Edward T; Fesik, Stephen WJournal of medicinal chemistry2013 Jan 1015-3023244564
Probing enzymatic activity inside living cells using a nanowire-cell "sandwich" assay.Na, Yu-Ran; Kim, So Yeon; Gaublomme, Jellert T; Shalek, Alex K; Jorgolli, Marsela; Park, Hongkun; Yang, Eun GyeongNano letters2013 Jan 9153-823244056
Accelerated high-yield generation of limb-innervating motor neurons from human stem cells.Amoroso, Mackenzie W; Croft, Gist F; Williams, Damian J; O'Keeffe, Sean; Carrasco, Monica A; Davis, Anne R; Roybon, Laurent; Oakley, Derek H; Maniatis, Tom; Henderson, Christopher E; Wichterle, HynekThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Jan 9574-8623303937
Deconvolving the roles of Wnt ligands and receptors in sensing and amplification.Tan, Rui Zhen; Ji, Ni; Mentink, Remco A; Korswagen, Hendrik C; van Oudenaarden, AlexanderMolecular systems biology2013 Jan 863123295860
Theoretical and experimental dissection of DNA loop-mediated repression.Boedicker, James Q; Garcia, Hernan G; Phillips, RobPhysical review letters2013 Jan 401810123383841
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization.Sharon, Itai; Morowitz, Michael J; Thomas, Brian C; Costello, Elizabeth K; Relman, David A; Banfield, Jillian FGenome research2013 Jan111-2022936250
Antiepileptic effects of levetiracetam in a rodent neonatal seizure model.Talos, Delia M; Chang, Meayoung; Kosaras, Bela; Fitzgerald, Erin; Murphy, Andrew; Folkerth, Rebecca Dunn; Jensen, Frances EPediatric research2013 Jan24-3023138400
TALENs: a widely applicable technology for targeted genome editing.Joung, J Keith; Sander, Jeffry DNature reviews. Molecular cell biology2013 Jan49-5523169466
WholeCellKB: model organism databases for comprehensive whole-cell models.Karr, Jonathan R; Sanghvi, Jayodita C; Macklin, Derek N; Arora, Abhishek; Covert, Markus WNucleic acids research2013 JanD787-9223175606
Neovascularization in biodegradable inverse opal scaffolds with uniform and precisely controlled pore sizes.Choi, Sung-Wook; Zhang, Yu; Macewan, Matthew R; Xia, YounanAdvanced healthcare materials2013 Jan145-5423184495
Activation of D1 dopamine receptors induces emergence from isoflurane general anesthesia.Taylor, Norman E; Chemali, Jessica J; Brown, Emery N; Solt, KenAnesthesiology2013 Jan30-923221866
The smallest stroke: occlusion of one penetrating vessel leads to infarction and a cognitive deficit.Shih, Andy Y; Blinder, Pablo; Tsai, Philbert S; Friedman, Beth; Stanley, Geoffrey; Lyden, Patrick D; Kleinfeld, DavidNature neuroscience2013 Jan55-6323242312
The hundred-year emotion war: are emotions natural kinds or psychological constructions? Comment on Lench, Flores, and Bench (2011).Lindquist, Kristen A; Siegel, Erika H; Quigley, Karen S; Barrett, Lisa FeldmanPsychological bulletin2013 Jan255-6323294094
Single-cell and population NF-ýýB dynamic responses depend on lipopolysaccharide preparation.Gutschow, Miriam V; Hughey, Jacob J; Ruggero, Nicholas A; Bajar, Bryce T; Valle, Sean D; Covert, Markus WPloS one2013e5322223301045
Use of somatic mutations to quantify random contributions to mouse development.Zhou, Wenyu; Tan, Yunbing; Anderson, Donovan J; Crist, Eva M; Ruohola-Baker, Hannele; Salipante, Stephen J; Horwitz, Marshall SBMC genomics20133923327737
Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States.Lin, Audrie; Bik, Elisabeth M; Costello, Elizabeth K; Dethlefsen, Les; Haque, Rashidul; Relman, David A; Singh, UpinderPloS one2013e5383823349750
Medical school gift restriction policies and physician prescribing of newly marketed psychotropic medications: difference-in-differences analysis.King, Marissa; Essick, Connor; Bearman, Peter; Ross, Joseph SBMJ (Clinical research ed.)2013f26423372175
AAV9 targets cone photoreceptors in the nonhuman primate retina.Vandenberghe, Luk H; Bell, Peter; Maguire, Albert M; Xiao, Ru; Hopkins, Tim B; Grant, Rebecca; Bennett, Jean; Wilson, James MPloS one2013e5346323382846
Perceiving invisible light through a somatosensory cortical prosthesis.Thomson, Eric E; Carra, Rafael; Nicolelis, Miguel A LNature communications2013148223403583
Synthetic biology: advancing the design of diverse genetic systems.Wang, Yen-Hsiang; Wei, Kathy Y; Smolke, Christina DAnnual review of chemical and biomolecular engineering201369-10223413816
Imaging trans-cellular neurexin-neuroligin interactions by enzymatic probe ligation.Liu, Daniel S; Loh, Ken H; Lam, Stephanie S; White, Katharine A; Ting, Alice YPloS one2013e5282323457442
Looking within the zebrafish to understand the tuberculous granuloma.Ramakrishnan, LalitaAdvances in experimental medicine and biology2013251-6623468113
Nanowire electrodes for high-density stimulation and measurement of neural circuits.Robinson, Jacob T; Jorgolli, Marsela; Park, HongkunFrontiers in neural circuits20133823486552
Homo-dimerization and ligand binding by the leucine-rich repeat domain at RHG1/RFS2 underlying resistance to two soybean pathogens.Afzal, Ahmed J; Srour, Ali; Goil, Abhishek; Vasudaven, Sheeja; Liu, Tianyun; Samudrala, Ram; Dogra, Navneet; Kohli, Punit; Malakar, Ayan; Lightfoot, David ABMC plant biology20134323497186
Macaque monkeys perceive the flash lag illusion.Subramaniyan, Manivannan; Ecker, Alexander S; Berens, Philipp; Tolias, Andreas SPloS one2013e5878823527024
Bumetanide enhances phenobarbital efficacy in a rat model of hypoxic neonatal seizures.Cleary, Ryan T; Sun, Hongyu; Huynh, Thanhthao; Manning, Simon M; Li, Yijun; Rotenberg, Alexander; Talos, Delia M; Kahle, Kristopher T; Jackson, Michele; Rakhade, Sanjay N; Berry, Gerard; Jensen, Frances EPloS one2013e5714823536761
Construction of human activity-based phosphorylation networks.Newman, Robert H; Hu, Jianfei; Rho, Hee-Sool; Xie, Zhi; Woodard, Crystal; Neiswinger, John; Cooper, Christopher; Shirley, Matthew; Clark, Hillary M; Hu, Shaohui; Hwang, Woochang; Jeong, Jun Seop; Wu, George; Lin, Jimmy; Gao, Xinxin; Ni, Qiang; Goel, Renu;Molecular systems biology201365523549483
Construction of human activity-based phosphorylation networks.Newman, Robert H; Hu, Jianfei; Rho, Hee-Sool; Xie, Zhi; Woodard, Crystal; Neiswinger, John; Cooper, Christopher; Shirley, Matthew; Clark, Hillary M; Hu, Shaohui; Hwang, Woochang; Jeong, Jun Seop; Wu, George; Lin, Jimmy; Gao, Xinxin; Ni, Qiang; Goel, Renu; Xia, Shuli; Ji, Hongkai; Dalby, Kevin N; Birnbaum, Morris J; Cole, Philip A; Knapp, Stefan; Ryazanov, Alexey G; Zack, Donald J; Blackshaw, Seth; Pawson, Tony; Gingras, Anne-Claude; Desiderio, Stephen; Pandey, Akhilesh; Turk, Benjamin E; Zhang, Jin; Zhu, Heng; Qian, JiangMolecular systems biology201365523549483
A real-time brain-machine interface combining motor target and trajectory intent using an optimal feedback control design.Shanechi, Maryam M; Williams, Ziv M; Wornell, Gregory W; Hu, Rollin C; Powers, Marissa; Brown, Emery NPloS one2013e5904923593130
Analysis of the murine immune response to pulmonary delivery of precisely fabricated nano- and microscale particles.Roberts, Reid A; Shen, Tammy; Allen, Irving C; Hasan, Warefta; DeSimone, Joseph M; Ting, Jenny P YPloS one2013e6211523593509
Biomimicry enhances sequential reactions of tethered glycolytic enzymes, TPI and GAPDHS.Mukai, Chinatsu; Gao, Lizeng; Bergkvist, Magnus; Nelson, Jacquelyn L; Hinchman, Meleana M; Travis, Alexander JPloS one2013e6143423626684
Structure prediction of partial-length protein sequences.Laurenzi, Adrian; Hung, Ling-Hong; Samudrala, RamInternational journal of molecular sciences201314892-90723867606
An enzyme that inactivates the inflammatory mediator leukotriene b4 restricts mycobacterial infection.Tobin, David M; Roca, Francisco J; Ray, John P; Ko, Dennis C; Ramakrishnan, LalitaPloS one2013e6782823874453
Heritable and precise zebrafish genome editing using a CRISPR-Cas system.Hwang, Woong Y; Fu, Yanfang; Reyon, Deepak; Maeder, Morgan L; Kaini, Prakriti; Sander, Jeffry D; Joung, J Keith; Peterson, Randall T; Yeh, Jing-Ruey JoannaPloS one2013e6870823874735
Deep-tissue photoacoustic tomography of Forster resonance energy transfer.Wang, Yu; Xia, Jun; Wang, Lihong VJournal of biomedical optics201310131623884608
Adaptive translation as a mechanism of stress response and adaptation.Pan, TaoAnnual review of genetics2013121-3723988117
Synaptic state matching: a dynamical architecture for predictive internal representation and feature detection.Tavazoie, SaeedPloS one2013e7286523991161
p53 regulates Period2 expression and the circadian clock.Miki, Takao; Matsumoto, Tomoko; Zhao, Zhaoyang; Lee, Cheng ChiNature communications2013244424051492
AMP deaminase 3 deficiency enhanced 5'-AMP induction of hypometabolism.Daniels, Isadora Susan; O Brien 3rd, William G; Nath, Vinay; Zhao, Zhaoyang; Lee, Cheng ChiPloS one2013e7541824066180
Gene Expression Profiling of a Hypoxic Seizure Model of Epilepsy Suggests a Role for mTOR and Wnt Signaling in Epileptogenesis.Theilhaber, Joachim; Rakhade, Sanjay N; Sudhalter, Judy; Kothari, Nayantara; Klein, Peter; Pollard, Jack; Jensen, Frances EPloS one2013e7442824086344
Photoacoustic recovery after photothermal bleaching in living cells.Li, Chiye; Zhang, Chi; Gao, Liang; Garcia-Uribe, Alejandro; Wang, Lihong VJournal of biomedical optics201310600424089253
Imaging energy status in live cells with a fluorescent biosensor of the intracellular ATP-to-ADP ratio.Tantama, Mathew; Martinez-Francois, Juan Ramon; Mongeon, Rebecca; Yellen, GaryNature communications2013255024096541
Investigating the role of firing-rate normalization and dimensionality reduction in brain-machine interface robustness.Kao, Jonathan C; Nuyujukian, Paul; Stavisky, Sergey; Ryu, Stephen I; Ganguli, Surya; Shenoy, Krishna VConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference2013293-824109682
Reference-free harmonic regression technique to remove EEG-fMRI ballistocardiogram artifacts.Krishnaswamy, Pavitra; Bonmassar, Giorgio; Purdon, Patrick L; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference20135426-924110963
Real-time segmentation and tracking of brain metabolic state in ICU EEG recordings of burst suppression.Westover, M Brandon; Ching, ShiNung; Shafi, Mouhsin M; Cash, Sydney S; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20137108-1124111383
The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus.Dhingra, Sourabh; Lind, Abigail L; Lin, Hsiao-Ching; Tang, Yi; Rokas, Antonis; Calvo, Ana MPloS one2013e7714724116213
Three-dimensional mapping of microcircuit correlation structure.Cotton, R James; Froudarakis, Emmanouil; Storer, Patrick; Saggau, Peter; Tolias, Andreas SFrontiers in neural circuits201315124133414
Correction: Distal Effect of Amino Acid Substitutions in CYP2C9 Polymorphic Variants Causes Differences in Interatomic Interactions against (S)-Warfarin.Lertkiatmongkol, Panida; Assawamakin, Anunchai; White, George; Chopra, Gaurav; Rongnoparut, Pornpimol; Samudrala, Ram; Tongsima, SissadesPloS one2013NULL24137505
Poly(dA:dT)-rich DNAs are highly flexible in the context of DNA looping.Johnson, Stephanie; Chen, Yi-Ju; Phillips, RobPloS one2013e7579924146776
Semiconductor-based DNA sequencing of histone modification states.Cheng, Christine S; Rai, Kunal; Garber, Manuel; Hollinger, Andrew; Robbins, Dana; Anderson, Scott; Macbeth, Alyssa; Tzou, Austin; Carneiro, Mauricio O; Raychowdhury, Raktima; Russ, Carsten; Hacohen, Nir; Gershenwald, Jeffrey E; Lennon, Niall; Nusbaum, ChaNature communications2013267224157732
Microbiome assembly across multiple body sites in low-birthweight infants.Costello, Elizabeth K; Carlisle, Erica M; Bik, Elisabeth M; Morowitz, Michael J; Relman, David AmBio2013e00782-1324169577
Time-reversed ultrasonically encoded optical focusing using two ultrasonic transducers for improved ultrasonic axial resolution.Yang, Qiang; Xu, Xiao; Lai, Puxiang; Xu, Daxiong; Wang, Lihong VJournal of biomedical optics201311050224194060
Ultrasound-heated photoacoustic flowmetry.Wang, Lidai; Yao, Junjie; Maslov, Konstantin I; Xing, Wenxin; Wang, Lihong VJournal of biomedical optics201311700324194064
Simulating the evolution of the human family: cooperative breeding increases in harsh environments.Smaldino, Paul E; Newson, Lesley; Schank, Jeffrey C; Richerson, Peter JPloS one2013e8075324278318
Improving limited-view photoacoustic tomography with an acoustic reflector.Huang, Bin; Xia, Jun; Maslov, Konstantin; Wang, Lihong VJournal of biomedical optics201311050524285421
National and local influenza surveillance through Twitter: an analysis of the 2012-2013 influenza epidemic.Broniatowski, David A; Paul, Michael J; Dredze, MarkPloS one2013e8367224349542
Germline progenitors escape the widespread phenomenon of homolog pairing during Drosophila development.Joyce, Eric F; Apostolopoulos, Nicholas; Beliveau, Brian J; Wu, C-tingPLoS genetics2013e100401324385920
Higher CD27+CD8+ T cells percentages during suppressive antiretroviral therapy predict greater subsequent CD4+ T cell recovery in treated HIV infection.Seu, Lillian; Ortiz, Gabriel M; Epling, Lorrie; Sinclair, Elizabeth; Swainson, Louise A; Bajpai, Urmila D; Huang, Yong; Deeks, Steven G; Hunt, Peter W; Martin, Jeffrey N; McCune, Joseph MPloS one2013e8409124391889
Focused fluorescence excitation with time-reversed ultrasonically encoded light and imaging in thick scattering media.Lai, Puxiang; Suzuki, Yuta; Xu, Xiao; Wang, Lihong VLaser physics letters20137560424465244
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.Beliveau, Brian J; Joyce, Eric F; Apostolopoulos, Nicholas; Yilmaz, Feyza; Fonseka, Chamith Y; McCole, Ruth B; Chang, Yiming; Li, Jin Billy; Senaratne, Tharanga Niroshini; Williams, Benjamin R; Rouillard, Jean-Marie; Wu, Chao-tingProceedings of the National Academy of Sciences of the United States of America2012 Dec 2621301-623236188
Protein-protected Au clusters as a new class of nanoscale biosensor for label-free fluorescence detection of proteases.Wang, Yucai; Wang, Yi; Zhou, Fengbo; Kim, Paul; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2012 Dec 213769-7322969016
NMDA receptor regulation prevents regression of visual cortical function in the absence of Mecp2.Durand, Severine; Patrizi, Annarita; Quast, Kathleen B; Hachigian, Lea; Pavlyuk, Roman; Saxena, Alka; Carninci, Piero; Hensch, Takao K; Fagiolini, MichelaNeuron2012 Dec 201078-9023259945
Antimicrobial Efflux Pumps and Mycobacterium Tuberculosis Drug Tolerance: Evolutionary Considerations.Szumowski, John D; Adams, Kristin N; Edelstein, Paul H; Ramakrishnan, LalitaCurrent topics in microbiology and immunology2012 Dec 16NULL23242857
Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress.Saikia, Mridusmita; Krokowski, Dawid; Guan, Bo-Jhih; Ivanov, Pavel; Parisien, Marc; Hu, Guo-fu; Anderson, Paul; Pan, Tao; Hatzoglou, MariaThe Journal of biological chemistry2012 Dec 1442708-2523086926
Nanowire-mediated delivery enables functional interrogation of primary immune cells: application to the analysis of chronic lymphocytic leukemia.Shalek, Alex K; Gaublomme, Jellert T; Wang, Lili; Yosef, Nir; Chevrier, Nicolas; Andersen, Mette S; Robinson, Jacob T; Pochet, Nathalie; Neuberg, Donna; Gertner, Rona S; Amit, Ido; Brown, Jennifer R; Hacohen, Nir; Regev, Aviv; Wu, Catherine J; Park, HongkNano letters2012 Dec 126498-50423190424
Spatial clusters of autism births and diagnoses point to contextual drivers ofýýincreased prevalence.Mazumdar, Soumya; Winter, Alix; Liu, Ka-Yuet; Bearman, PeterSocial science & medicine (1982)2012 Dec 823267775
Identity and function of a large gene network underlying mutagenic repair of DNA breaks.Al Mamun, Abu Amar M; Lombardo, Mary-Jane; Shee, Chandan; Lisewski, Andreas M; Gonzalez, Caleb; Lin, Dongxu; Nehring, Ralf B; Saint-Ruf, Claude; Gibson, Janet L; Frisch, Ryan L; Lichtarge, Olivier; Hastings, P J; Rosenberg, Susan MScience (New York, N.Y.)2012 Dec 71344-823224554
Glutamate receptor 1 phosphorylation at serine 831 and 845 modulates seizure susceptibility and hippocampal hyperexcitability after early life seizures.Rakhade, Sanjay N; Fitzgerald, Erin F; Klein, Peter M; Zhou, Chengwen; Sun, Hongyu; Huganir, Richard L; Hunganir, Richard L; Jensen, Frances EThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Dec 517800-1223223299
Understanding the TXA seizure connection.Schwinn, Debra A; Mackensen, G Burkhard; Brown, Emery NThe Journal of clinical investigation2012 Dec 34339-4123187134
Generating extracellular amyloid aggregates using E. coli cells.Sivanathan, Viknesh; Hochschild, AnnGenes & development2012 Dec 12659-6723166018
Out of sight but not out of mind: unseen affective faces influence evaluations and social impressions.Anderson, Eric; Siegel, Erika; White, Dominique; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2012 Dec1210-2122506501
Insights into tuberculosis from the zebrafish model.Berg, Russell D; Ramakrishnan, LalitaTrends in molecular medicine2012 Dec689-9023084762
Neural population partitioning and a concurrent brain-machine interface for sequential motor function.Shanechi, Maryam M; Hu, Rollin C; Powers, Marissa; Wornell, Gregory W; Brown, Emery N; Williams, Ziv MNature neuroscience2012 Dec1715-2223143511
Leptin and insulin pathways in POMC and AgRP neurons that modulate energy balance and glucose homeostasis.Varela, Luis; Horvath, Tamas LEMBO reports2012 Dec1079-8623146889
A high-performance neural prosthesis enabled by control algorithm design.Gilja, Vikash; Nuyujukian, Paul; Chestek, Cindy A; Cunningham, John P; Yu, Byron M; Fan, Joline M; Churchland, Mark M; Kaufman, Matthew T; Kao, Jonathan C; Ryu, Stephen I; Shenoy, Krishna VNature neuroscience2012 Dec1752-723160043
Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy.Dedecker, Peter; Duwe, Sam; Neely, Robert K; Zhang, JinJournal of biomedical optics2012 Dec12600823208219
A marriage made to last in drug design.Dietrich, Marcelo O; Horvath, Tamas LNature medicine2012 Dec1737-823223057
Proprioceptive coupling within motor neurons drives C. elegans forward locomotion.Wen, Quan; Po, Michelle D; Hulme, Elizabeth; Chen, Sway; Liu, Xinyu; Kwok, Sen Wai; Gershow, Marc; Leifer, Andrew M; Butler, Victoria; Fang-Yen, Christopher; Kawano, Taizo; Schafer, William R; Whitesides, George; Wyart, Matthieu; Chklovskii, Dmitri B; ZheNeuron2012 Nov 21750-6123177960
Phosphoribosomes for fingerprinting neurons.Dietrich, Marcelo O; Horvath, Tamas LCell2012 Nov 21934-623178116
Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases.Michener, Joshua K; Nielsen, Jens; Smolke, Christina DProceedings of the National Academy of Sciences of the United States of America2012 Nov 2019504-923129650
A bioreducible polymer for efficient delivery of Fas-silencing siRNA into stem cell spheroids and enhanced therapeutic angiogenesis.Shim, Min Suk; Bhang, Suk Ho; Yoon, Kyunghwan; Choi, Kyunghee; Xia, YounanAngewandte Chemie (International ed. in English)2012 Nov 1911899-90323074025
AgRP neurons: a switch between peripheral carbohydrate and lipid utilization.Varela, Luis; Horvath, Tamas LThe EMBO journal2012 Nov 144252-423085989
Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils.Martinez-Avila, Olga; Wu, Shenping; Kim, Seung Joong; Cheng, Yifan; Khan, Feroz; Samudrala, Ram; Sali, Andrej; Horst, Jeremy A; Habelitz, StefanBiomacromolecules2012 Nov 123494-50222974364
Capturing the cloud: UAP56 in nuage assembly and function.Lin, HaifanCell2012 Nov 9699-70123141532
High-performance binary protein interaction screening in a microfluidic format.Meier, Matthias; Sit, Rene; Pan, Wenying; Quake, Stephen RAnalytical chemistry2012 Nov 69572-823051662
Bipolar cell-photoreceptor connectivity in the zebrafish (Danio rerio) retina.Li, Yong N; Tsujimura, Taro; Kawamura, Shoji; Dowling, John EThe Journal of comparative neurology2012 Nov 13786-80222907678
Misacylation of tRNA with methionine in Saccharomyces cerevisiae.Wiltrout, Elizabeth; Goodenbour, Jeffrey M; Frechin, Mathieu; Pan, TaoNucleic acids research2012 Nov 110494-50622941646
Leptin regulates glutamate and glucose transporters in hypothalamic astrocytes.Fuente-Martin, Esther; Garcia-Caceres, Cristina; Granado, Miriam; de Ceballos, Maria L; Sanchez-Garrido, Miguel Angel; Sarman, Beatrix; Liu, Zhong-Wu; Dietrich, Marcelo O; Tena-Sempere, Manuel; Argente-Arizon, Pilar; Diaz, Francisca; Argente, Jesus; HorvaThe Journal of clinical investigation2012 Nov 13900-1323064363
Macroporous nanowire nanoelectronic scaffolds for synthetic tissues.Tian, Bozhi; Liu, Jia; Dvir, Tal; Jin, Lihua; Tsui, Jonathan H; Qing, Quan; Suo, Zhigang; Langer, Robert; Kohane, Daniel S; Lieber, Charles MNature materials2012 Nov986-9422922448
Acoustic radiation force for vascular cell therapy: inýývitroýývalidation.Kaya, Mehmet; Toma, Catalin; Wang, Jianjun; Grata, Michelle; Fu, Huili; Villanueva, Flordeliza S; Chen, XucaiUltrasound in medicine & biology2012 Nov1989-9722975034
Chimeric TALE recombinases with programmable DNA sequence specificity.Mercer, Andrew C; Gaj, Thomas; Fuller, Roberta P; Barbas 3rd, Carlos FNucleic acids research2012 Nov11163-7223019222
A functional architecture of the human brain: emerging insights from the science of emotion.Lindquist, Kristen A; Barrett, Lisa FeldmanTrends in cognitive sciences2012 Nov533-4023036719
Iterative plug-and-play methodology for constructing and modifying synthetic gene networks.Litcofsky, Kevin D; Afeyan, Raffi B; Krom, Russell J; Khalil, Ahmad S; Collins, James JNature methods2012 Nov1077-8023042452
Finding a better drug for epilepsy: antiepileptogenesis targets.Kobow, Katja; Auvin, Stephane; Jensen, Frances; Loscher, Wolfgang; Mody, Istvan; Potschka, Heidrun; Prince, David; Sierra, Alejandra; Simonato, Michele; Pitkanen, Asla; Nehlig, Astrid; Rho, Jong MEpilepsia2012 Nov1868-7623061663
Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy.Martell, Jeffrey D; Deerinck, Thomas J; Sancak, Yasemin; Poulos, Thomas L; Mootha, Vamsi K; Sosinsky, Gina E; Ellisman, Mark H; Ting, Alice YNature biotechnology2012 Nov1143-823086203
Optimal operating points of oscillators using nonlinear resonators.Kenig, Eyal; Cross, M C; Villanueva, L G; Karabalin, R B; Matheny, M H; Lifshitz, Ron; Roukes, M LPhysical review. E, Statistical, nonlinear, and soft matter physics2012 Nov5620723214857
Shining light on nuclear-targeted therapy using gold nanostar constructs.Dam, Duncan Hieu M; Culver, Kayla S B; Sisco, Patrick N; Odom, Teri WTherapeutic delivery2012 Nov1263-723259247
Identification and characterization of the chaetoviridin and chaetomugilin gene cluster in Chaetomium globosum reveal dual functions of an iterative highly-reducing polyketide synthase.Winter, Jaclyn M; Sato, Michio; Sugimoto, Satoru; Chiou, Grace; Garg, Neil K; Tang, Yi; Watanabe, KenjiJournal of the American Chemical Society2012 Oct 3117900-323072467
FUS-SMN protein interactions link the motor neuron diseases ALS and SMA.Yamazaki, Tomohiro; Chen, Shi; Yu, Yong; Yan, Biao; Haertlein, Tyler C; Carrasco, Monica A; Tapia, Juan C; Zhai, Bo; Das, Rita; Lalancette-Hebert, Melanie; Sharma, Aarti; Chandran, Siddharthan; Sullivan, Gareth; Nishimura, Agnes Lumi; Shaw, Christopher E;Cell reports2012 Oct 25799-80623022481
Two mechanisms produce mutation hotspots at DNA breaks in Escherichia coli.Shee, Chandan; Gibson, Janet L; Rosenberg, Susan MCell reports2012 Oct 25714-2123041320
Intrinsic amygdala-cortical functional connectivity predicts social network size in humans.Bickart, Kevin C; Hollenbeck, Mark C; Barrett, Lisa Feldman; Dickerson, Bradford CThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Oct 1714729-4123077058
Oligodendrocyte regeneration after neonatal hypoxia requires FoxO1-mediated p27Kip1 expression.Jablonska, Beata; Scafidi, Joseph; Aguirre, Adan; Vaccarino, Flora; Nguyen, Vien; Borok, Erzsebet; Horvath, Tamas L; Rowitch, David H; Gallo, VittorioThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Oct 1714775-9323077062
A chemically programmed antibody is a long-lasting and potent inhibitor of influenza neuraminidase.Hayakawa, Masahiko; Toda, Narihiro; Carrillo, Nancy; Thornburg, Natalie J; Crowe Jr, James E; Barbas 3rd, Carlos FChembiochem : a European journal of chemical biology2012 Oct 152191-522965667
Identification and characterization of the echinocandin B biosynthetic gene cluster from Emericella rugulosa NRRL 11440.Cacho, Ralph A; Jiang, Wei; Chooi, Yit-Heng; Walsh, Christopher T; Tang, YiJournal of the American Chemical Society2012 Oct 1016781-9022998630
Stochastic facilitation of artificial tactile sensation in primates.Medina, Leonel E; Lebedev, Mikhail A; O'Doherty, Joseph E; Nicolelis, Miguel A LThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Oct 1014271-523055496
Transgenerational epigenetic effects of the Apobec1 cytidine deaminase deficiency on testicular germ cell tumor susceptibility and embryonic viability.Nelson, Vicki R; Heaney, Jason D; Tesar, Paul J; Davidson, Nicholas O; Nadeau, Joseph HProceedings of the National Academy of Sciences of the United States of America2012 Oct 9E2766-7322923694
Uncovering spatial topology represented by rat hippocampal population neuronal codes.Chen, Zhe; Kloosterman, Fabian; Brown, Emery N; Wilson, Matthew AJournal of computational neuroscience2012 Oct227-5522307459
Small heat shock proteins in redox metabolism: implications for cardiovascular diseases.Christians, Elisabeth S; Ishiwata, Takahiro; Benjamin, Ivor JThe international journal of biochemistry & cell biology2012 Oct1632-4522710345
Mapping of visual receptive fields by tomographic reconstruction.Pipa, Gordon; Chen, Zhe; Neuenschwander, Sergio; Lima, Bruss; Brown, Emery NNeural computation2012 Oct2543-7822734491
A real-time automated point-process method for the detection and correction of erroneous and ectopic heartbeats.Citi, Luca; Brown, Emery N; Barbieri, RiccardoIEEE transactions on bio-medical engineering2012 Oct2828-3722875239
Multicolored stain-free histopathology with coherent Raman imaging.Freudiger, Christian W; Pfannl, Rolf; Orringer, Daniel A; Saar, Brian G; Ji, Minbiao; Zeng, Qing; Ottoboni, Linda; Wei, Ying; Ying, Wei; Waeber, Christian; Sims, John R; De Jager, Philip L; Sagher, Oren; Philbert, Martin A; Xu, Xiaoyin; Kesari, Santosh; XLaboratory investigation; a journal of technical methods and pathology2012 Oct1492-50222906986
Induction and molecular signature of pathogenic TH17 cells.Lee, Youjin; Awasthi, Amit; Yosef, Nir; Quintana, Francisco J; Xiao, Sheng; Peters, Anneli; Wu, Chuan; Kleinewietfeld, Markus; Kunder, Sharon; Hafler, David A; Sobel, Raymond A; Regev, Aviv; Kuchroo, Vijay KNature immunology2012 Oct991-922961052
Reversible switching between epigenetic states in honeybee behavioral subcastes.Herb, Brian R; Wolschin, Florian; Hansen, Kasper D; Aryee, Martin J; Langmead, Ben; Irizarry, Rafael; Amdam, Gro V; Feinberg, Andrew PNature neuroscience2012 Oct1371-322983211
Engineering designer transcription activator-like effector nucleases (TALENs) by REAL or REAL-Fast assembly.Reyon, Deepak; Khayter, Cyd; Regan, Maureen R; Joung, J Keith; Sander, Jeffry DCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]2012 OctUnit 12.1523026907
Neuron-to-neuron transmission of ýý-synuclein fibrils through axonal transport.Freundt, Eric C; Maynard, Nate; Clancy, Eileen K; Roy, Shyamali; Bousset, Luc; Sourigues, Yannick; Covert, Markus; Melki, Ronald; Kirkegaard, Karla; Brahic, MichelAnnals of neurology2012 Oct517-2423109146
Quantitative analysis of the human airway microbial ecology reveals a pervasive signature for cystic fibrosis.Blainey, Paul C; Milla, Carlos E; Cornfield, David N; Quake, Stephen RScience translational medicine2012 Sep 26153ra13023019655
Disordered Protein Diffusion under Crowded Conditions.Wang, Yaqiang; Benton, Laura A; Singh, Vishavpreet; Pielak, Gary JThe journal of physical chemistry letters2012 Sep 202703-270623185649
Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase.Buganim, Yosef; Faddah, Dina A; Cheng, Albert W; Itskovich, Elena; Markoulaki, Styliani; Ganz, Kibibi; Klemm, Sandy L; van Oudenaarden, Alexander; Jaenisch, RudolfCell2012 Sep 141209-2222980981
Neutrophils exert protection in the early tuberculous granuloma by oxidative killing of mycobacteria phagocytosed from infected macrophages.Yang, Chao-Tsung; Cambier, C J; Davis, J Muse; Hall, Christopher J; Crosier, Philip S; Ramakrishnan, LalitaCell host & microbe2012 Sep 13301-1222980327
States of mind: emotions, body feelings, and thoughts share distributed neural networks.Oosterwijk, Suzanne; Lindquist, Kristen A; Anderson, Eric; Dautoff, Rebecca; Moriguchi, Yoshiya; Barrett, Lisa FeldmanNeuroImage2012 Sep2110-2822677148
Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.Cade, Lindsay; Reyon, Deepak; Hwang, Woong Y; Tsai, Shengdar Q; Patel, Samir; Khayter, Cyd; Joung, J Keith; Sander, Jeffry D; Peterson, Randall T; Yeh, Jing-Ruey JoannaNucleic acids research2012 Sep8001-1022684503
Sequence dependence of transcription factor-mediated DNA looping.Johnson, Stephanie; Linden, Martin; Phillips, RobNucleic acids research2012 Sep7728-3822718983
Minimal requirements for inhibition of MraY by lysis protein E from bacteriophage ýýX174.Tanaka, Shiho; Clemons Jr, William MMolecular microbiology2012 Sep975-8522742425
Limitations in anti-obesity drug development: the critical role of hunger-promoting neurons.Dietrich, Marcelo O; Horvath, Tamas LNature reviews. Drug discovery2012 Sep675-9122858652
Strategic protein target analysis for developing drugs to stop dental caries.Horst, J A; Pieper, U; Sali, A; Zhan, L; Chopra, G; Samudrala, R; Featherstone, J D BAdvances in dental research2012 Sep86-9322899687
Mouse ooplasm confers context-specific reprogramming capacity.Chan, Michelle M; Smith, Zachary D; Egli, Dieter; Regev, Aviv; Meissner, AlexanderNature genetics2012 Sep978-8022902786
Single-protein nanomechanical mass spectrometry in real time.Hanay, M S; Kelber, S; Naik, A K; Chi, D; Hentz, S; Bullard, E C; Colinet, E; Duraffourg, L; Roukes, M LNature nanotechnology2012 Sep602-822922541
Gross chromosomal rearrangement mediated by DNA replication in stressed cells: evidence from Escherichia coli.Moore, J M; Wimberly, Hallie; Thornton, P C; Rosenberg, Susan M; Hastings, P JAnnals of the New York Academy of Sciences2012 Sep103-922954223
A census of human soluble protein complexes.Havugimana, Pierre C; Hart, G Traver; Nepusz, Tamas; Yang, Haixuan; Turinsky, Andrei L; Li, Zhihua; Wang, Peggy I; Boutz, Daniel R; Fong, Vincent; Phanse, Sadhna; Babu, Mohan; Craig, Stephanie A; Hu, Pingzhao; Wan, Cuihong; Vlasblom, James; Dar, Vaqaar-unCell2012 Aug 311068-8122939629
The effect of particle size on the biodistribution of low-modulus hydrogel PRINT particles.Merkel, Timothy J; Chen, Kai; Jones, Stephen W; Pandya, Ashish A; Tian, Shaomin; Napier, Mary E; Zamboni, William E; DeDimone, Joseph MJournal of controlled release : official journal of the Controlled Release Society2012 Aug 2037-4422705460
Accelerated protein structure comparison using TM-score-GPU.Hung, Ling-Hong; Samudrala, RamBioinformatics (Oxford, England)2012 Aug 152191-222718788
Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers.Lachance, Joseph; Vernot, Benjamin; Elbers, Clara C; Ferwerda, Bart; Froment, Alain; Bodo, Jean-Marie; Lema, Godfrey; Fu, Wenqing; Nyambo, Thomas B; Rebbeck, Timothy R; Zhang, Kun; Akey, Joshua M; Tishkoff, Sarah ACell2012 Aug 3457-6922840920
A synthetic biology framework for programming eukaryotic transcription functions.Khalil, Ahmad S; Lu, Timothy K; Bashor, Caleb J; Ramirez, Cherie L; Pyenson, Nora C; Joung, J Keith; Collins, James JCell2012 Aug 3647-5822863014
Affective state influences perception by affecting decision parameters underlying bias and sensitivity.Lynn, Spencer K; Zhang, Xuan; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2012 Aug726-3622251054
Engineering nanomedicines using stimuli-responsive biomaterials.Wang, Yapei; Byrne, James D; Napier, Mary E; DeSimone, Joseph MAdvanced drug delivery reviews2012 Aug1021-3022266128
A functional variant in FCRL3 is associated with higher Fc receptor-like 3 expression on T cell subsets and rheumatoid arthritis disease activity.Bajpai, Urmila D; Swainson, Louise A; Mold, Jeff E; Graf, Jonathan D; Imboden, John B; McCune, Joseph MArthritis and rheumatism2012 Aug2451-922392608
In vivo veritas, in vitro artificia.Matarese, Giuseppe; La Cava, Antonio; Horvath, Tamas LTrends in molecular medicine2012 Aug439-4222682514
AgRP neurons regulate development of dopamine neuronal plasticity and nonfood-associated behaviors.Dietrich, Marcelo O; Bober, Jeremy; Ferreira, Jozelia G; Tellez, Luis A; Mineur, Yann S; Souza, Diogo O; Gao, Xiao-Bing; Picciotto, Marina R; Araujo, Ivan; Liu, Zhong-Wu; Horvath, Tamas LNature neuroscience2012 Aug1108-1022729177
Structural diversity and African origin of the 17q21.31 inversion polymorphism.Steinberg, Karyn Meltz; Antonacci, Francesca; Sudmant, Peter H; Kidd, Jeffrey M; Campbell, Catarina D; Vives, Laura; Malig, Maika; Scheinfeldt, Laura; Beggs, William; Ibrahim, Muntaser; Lema, Godfrey; Nyambo, Thomas B; Omar, Sabah A; Bodo, Jean-Marie; FroNature genetics2012 Aug872-8022751100
Targeted gene knockout by direct delivery of zinc-finger nuclease proteins.Gaj, Thomas; Guo, Jing; Kato, Yoshio; Sirk, Shannon J; Barbas 3rd, Carlos FNature methods2012 Aug805-722751204
Wisdom of crowds for robust gene network inference.Marbach, Daniel; Costello, James C; Kuffner, Robert; Vega, Nicole M; Prill, Robert J; Camacho, Diogo M; Allison, Kyle R; DREAM5 Consortium; Kellis, Manolis; Collins, James J; Stolovitzky, GustavoNature methods2012 Aug796-80422796662
What sperm can teach us about energy production.Mukai, C; Travis, A JReproduction in domestic animals = Zuchthygiene2012 Aug164-922827366
Vectorization of optically sectioned brain microvasculature: learning aids completion of vascular graphs by connecting gaps and deleting open-ended segments.Kaufhold, John P; Tsai, Philbert S; Blinder, Pablo; Kleinfeld, DavidMedical image analysis2012 Aug1241-5822854035
The human microbiome: ecosystem resilience and health.Relman, David ANutrition reviews2012 AugS2-922861804
Distributed control in a mean-field cortical network model: implications for seizure suppression.Ching, ShiNung; Brown, Emery N; Kramer, Mark APhysical review. E, Statistical, nonlinear, and soft matter physics2012 Aug02192023005798
Modeling human cortical development in vitro using induced pluripotent stem cells.Mariani, Jessica; Simonini, Maria Vittoria; Palejev, Dean; Tomasini, Livia; Coppola, Gianfilippo; Szekely, Anna M; Horvath, Tamas L; Vaccarino, Flora MProceedings of the National Academy of Sciences of the United States of America2012 Jul 3112770-522761314
ýý-Arrestin2 mediates the initiation and progression of myeloid leukemia.Fereshteh, Mark; Ito, Takahiro; Kovacs, Jeffrey J; Zhao, Chen; Kwon, Hyog Young; Tornini, Valerie; Konuma, Takaaki; Chen, Minyong; Lefkowitz, Robert J; Reya, TannishthaProceedings of the National Academy of Sciences of the United States of America2012 Jul 3112532-722773819
Estimation theoretic measure of resolution for stochastic localization microscopy.Fitzgerald, James E; Lu, Ju; Schnitzer, Mark JPhysical review letters2012 Jul 2704810223006110
Operator sequence alters gene expression independently of transcription factor occupancy in bacteria.Garcia, Hernan G; Sanchez, Alvaro; Boedicker, James Q; Osborne, Melisa; Gelles, Jeff; Kondev, Jane; Phillips, RobCell reports2012 Jul 26150-6122840405
An in vivo platform for rapid high-throughput antitubercular drug discovery.Takaki, Kevin; Cosma, Christine L; Troll, Mark A; Ramakrishnan, LalitaCell reports2012 Jul 26175-8422840407
A single-molecule Hershey-Chase experiment.Van Valen, David; Wu, David; Chen, Yi-Ju; Tuson, Hannah; Wiggins, Paul; Phillips, RobCurrent biology : CB2012 Jul 241339-4322727695
Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120.West Jr, Anthony P; Diskin, Ron; Nussenzweig, Michel C; Bjorkman, Pamela JProceedings of the National Academy of Sciences of the United States of America2012 Jul 24E2083-9022745174
The dawn of virtual cell biology.Freddolino, Peter L; Tavazoie, SaeedCell2012 Jul 20248-5022817888
A whole-cell computational model predicts phenotype from genotype.Karr, Jonathan R; Sanghvi, Jayodita C; Macklin, Derek N; Gutschow, Miriam V; Jacobs, Jared M; Bolival Jr, Benjamin; Assad-Garcia, Nacyra; Glass, John I; Covert, Markus WCell2012 Jul 20389-40122817898
Non-invasive prenatal measurement of the fetal genome.Fan, H Christina; Gu, Wei; Wang, Jianbin; Blumenfeld, Yair J; El-Sayed, Yasser Y; Quake, Stephen RNature2012 Jul 19320-422763444
Cyclic caged morpholinos: conformationally gated probes of embryonic gene function.Yamazoe, Sayumi; Shestopalov, Ilya A; Provost, Elayne; Leach, Steven D; Chen, James KAngewandte Chemie (International ed. in English)2012 Jul 96908-1122689470
Neural population dynamics during reaching.Churchland, Mark M; Cunningham, John P; Kaufman, Matthew T; Foster, Justin D; Nuyujukian, Paul; Ryu, Stephen I; Shenoy, Krishna VNature2012 Jul 551-622722855
Otx2 binding to perineuronal nets persistently regulates plasticity in the mature visual cortex.Beurdeley, Marine; Spatazza, Julien; Lee, Henry H C; Sugiyama, Sayaka; Bernard, Clemence; Di Nardo, Ariel A; Hensch, Takao K; Prochiantz, AlainThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Jul 49429-3722764251
Widely accessible method for superresolution fluorescence imaging of living systems.Dedecker, Peter; Mo, Gary C H; Dertinger, Thomas; Zhang, JinProceedings of the National Academy of Sciences of the United States of America2012 Jul 310909-1422711840
Two-photon microscopy as a tool to study blood flow and neurovascular coupling in the rodent brain.Shih, Andy Y; Driscoll, Jonathan D; Drew, Patrick J; Nishimura, Nozomi; Schaffer, Chris B; Kleinfeld, DavidJournal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism2012 Jul1277-30922293983
Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects.Ramirez, Cherie L; Certo, Michael T; Mussolino, Claudio; Goodwin, Mathew J; Cradick, Thomas J; McCaffrey, Anton P; Cathomen, Toni; Scharenberg, Andrew M; Joung, J KeithNucleic acids research2012 Jul5560-822373919
How cells process information: quantification of spatiotemporal signaling dynamics.Ganesan, Ambhighainath; Zhang, JinProtein science : a publication of the Protein Society2012 Jul918-2822573643
General principles of single-construct chromosomal gene drive.Marshall, John M; Hay, Bruce AEvolution; international journal of organic evolution2012 Jul2150-6622759292
Sirtuin 1 and sirtuin 3: physiological modulators of metabolism.Nogueiras, Ruben; Habegger, Kirk M; Chaudhary, Nilika; Finan, Brian; Banks, Alexander S; Dietrich, Marcelo O; Horvath, Tamas L; Sinclair, David A; Pfluger, Paul T; Tschop, Matthias HPhysiological reviews2012 Jul1479-51422811431
Passive phase noise cancellation scheme.Kenig, Eyal; Cross, M C; Lifshitz, Ron; Karabalin, R B; Villanueva, L G; Matheny, M H; Roukes, M LPhysical review letters2012 Jun 2926410223004985
New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior.Ament, Seth A; Blatti, Charles A; Alaux, Cedric; Wheeler, Marsha M; Toth, Amy L; Le Conte, Yves; Hunt, Greg J; Guzman-Novoa, Ernesto; Degrandi-Hoffman, Gloria; Uribe-Rubio, Jose Luis; Amdam, Gro V; Page Jr, Robert E; Rodriguez-Zas, Sandra L; Robinson, GenProceedings of the National Academy of Sciences of the United States of America2012 Jun 26E1801-1022691501
Gut immune maturation depends on colonization with a host-specific microbiota.Chung, Hachung; Pamp, Sunje J; Hill, Jonathan A; Surana, Neeraj K; Edelman, Sanna M; Troy, Erin B; Reading, Nicola C; Villablanca, Eduardo J; Wang, Sen; Mora, Jorge R; Umesaki, Yoshinori; Mathis, Diane; Benoist, Christophe; Relman, David A; Kasper, DennisCell2012 Jun 221578-9322726443
High throughput automated chromatin immunoprecipitation as a platform for drug screening and antibody validation.Wu, Angela R; Kawahara, Tiara L A; Rapicavoli, Nicole A; van Riggelen, Jan; Shroff, Emelyn H; Xu, Liwen; Felsher, Dean W; Chang, Howard Y; Quake, Stephen RLab on a chip2012 Jun 212190-822566096
The brain activity map project and the challenge of functional connectomics.Alivisatos, A Paul; Chun, Miyoung; Church, George M; Greenspan, Ralph J; Roukes, Michael L; Yuste, RafaelNeuron2012 Jun 21970-422726828
Subcortical neuronal ensembles: an analysis of motor task association, tremor, oscillations, and synchrony in human patients.Hanson, Timothy L; Fuller, Andrew M; Lebedev, Mikhail A; Turner, Dennis A; Nicolelis, Miguel A LThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Jun 208620-3222723703
Specific inactivation of two immunomodulatory SIGLEC genes during human evolution.Wang, Xiaoxia; Mitra, Nivedita; Secundino, Ismael; Banda, Kalyan; Cruz, Pedro; Padler-Karavani, Vered; Verhagen, Andrea; Reid, Chris; Lari, Martina; Rizzi, Ermanno; Balsamo, Carlotta; Corti, Giorgio; De Bellis, Gianluca; Longo, Laura; NISC Comparative SeqProceedings of the National Academy of Sciences of the United States of America2012 Jun 199935-4022665810
Discovery of small molecules that bind to K-Ras and inhibit Sos-mediated activation.Sun, Qi; Burke, Jason P; Phan, Jason; Burns, Michael C; Olejniczak, Edward T; Waterson, Alex G; Lee, Taekyu; Rossanese, Olivia W; Fesik, Stephen WAngewandte Chemie (International ed. in English)2012 Jun 186140-322566140
Talbot effect beyond the paraxial limit at optical frequencies.Hua, Yi; Suh, Jae Yong; Zhou, Wei; Huntington, Mark D; Odom, Teri WOptics express2012 Jun 1814284-9122714490
Outside looking in: nanotube transistor intracellular sensors.Gao, Ruixuan; Strehle, Steffen; Tian, Bozhi; Cohen-Karni, Tzahi; Xie, Ping; Duan, Xiaojie; Qing, Quan; Lieber, Charles MNano letters2012 Jun 133329-3322583370
Effect of aspect ratio and deformability on nanoparticle extravasation through nanopores.Kersey, Farrell R; Merkel, Timothy J; Perry, Jillian L; Napier, Mary E; DeSimone, Joseph MLangmuir : the ACS journal of surfaces and colloids2012 Jun 128773-8122612428
Antibiotic-induced bacterial cell death exhibits physiological and biochemical hallmarks of apoptosis.Dwyer, Daniel J; Camacho, Diogo M; Kohanski, Michael A; Callura, Jarred M; Collins, James JMolecular cell2012 Jun 8561-7222633370
The application of ecological theory toward an understanding of the human microbiome.Costello, Elizabeth K; Stagaman, Keaton; Dethlefsen, Les; Bohannan, Brendan J M; Relman, David AScience (New York, N.Y.)2012 Jun 81255-6222674335
FoxO1 target Gpr17 activates AgRP neurons to regulate food intake.Ren, Hongxia; Orozco, Ian J; Su, Ya; Suyama, Shigetomo; Gutierrez-Juarez, Roger; Horvath, Tamas L; Wardlaw, Sharon L; Plum, Leona; Arancio, Ottavio; Accili, DomenicoCell2012 Jun 81314-2622682251
Stress-induced variations in the stiffness of micro- and nanocantilever beams.Karabalin, R B; Villanueva, L G; Matheny, M H; Sader, J E; Roukes, M LPhysical review letters2012 Jun 823610123003973
Microbiota-targeted therapies: an ecological perspective.Lemon, Katherine P; Armitage, Gary C; Relman, David A; Fischbach, Michael AScience translational medicine2012 Jun 6137rv522674555
Targeting endoglin, an auxiliary transforming growth factor ýý coreceptor, to prevent fibrosis and heart failure.Benjamin, Ivor JCirculation2012 Jun 52689-9122592899
Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).Pamp, Sunje J; Harrington, Eoghan D; Quake, Stephen R; Relman, David A; Blainey, Paul CGenome research2012 Jun1107-1922434425
The brain basis of emotion: a meta-analytic review.Lindquist, Kristen A; Wager, Tor D; Kober, Hedy; Bliss-Moreau, Eliza; Barrett, Lisa FeldmanThe Behavioral and brain sciences2012 Jun121-4322617651
Emotions are real.Barrett, Lisa FeldmanEmotion (Washington, D.C.)2012 Jun413-2922642358
Cementomimetics-constructing a cementum-like biomineralized microlayer via amelogenin-derived peptides.Gungormus, Mustafa; Oren, Ersin E; Horst, Jeremy A; Fong, Hanson; Hnilova, Marketa; Somerman, Martha J; Snead, Malcolm L; Samudrala, Ram; Tamerler, Candan; Sarikaya, MehmetInternational journal of oral science2012 Jun69-7722743342
Rendering protein-based particles transiently insoluble for therapeutic applications.Xu, Jing; Wang, Jin; Luft, J Christopher; Tian, Shaomin; Owens Jr, Gary; Pandya, Ashish A; Berglund, Peter; Pohlhaus, Patrick; Maynor, Benjamin W; Smith, Jonathan; Hubby, Bolyn; Napier, Mary E; DeSimone, Joseph MJournal of the American Chemical Society2012 May 308774-722568387
SIV replication in the infected rhesus macaque is limited by the size of the preexisting TH17 cell compartment.Hartigan-O'Connor, Dennis J; Abel, Kristina; Van Rompay, Koen K A; Kanwar, Bittoo; McCune, Joseph MScience translational medicine2012 May 30136ra6922649090
Brain-wide neuronal dynamics during motor adaptation in zebrafish.Ahrens, Misha B; Li, Jennifer M; Orger, Michael B; Robson, Drew N; Schier, Alexander F; Engert, Florian; Portugues, RubenNature2012 May 24471-722622571
Systematic discovery of structural elements governing stability of mammalian messenger RNAs.Goodarzi, Hani; Najafabadi, Hamed S; Oikonomou, Panos; Greco, Todd M; Fish, Lisa; Salavati, Reza; Cristea, Ileana M; Tavazoie, SaeedNature2012 May 10264-822495308
Synthetically encoded ultrashort-channel nanowire transistors for fast, pointlike cellular signal detection.Cohen-Karni, Tzahi; Casanova, Didier; Cahoon, James F; Qing, Quan; Bell, David C; Lieber, Charles MNano letters2012 May 92639-4422468846
Incorporation and controlled release of silyl ether prodrugs from PRINT nanoparticles.Parrott, Matthew C; Finniss, Mathew; Luft, J Chris; Pandya, Ashish; Gullapalli, Anuradha; Napier, Mary E; DeSimone, Joseph MJournal of the American Chemical Society2012 May 97978-8222545784
Reductively responsive siRNA-conjugated hydrogel nanoparticles for gene silencing.Dunn, Stuart S; Tian, Shaomin; Blake, Steven; Wang, Jin; Galloway, Ashley L; Murphy, Andrew; Pohlhaus, Patrick D; Rolland, Jason P; Napier, Mary E; DeSimone, Joseph MJournal of the American Chemical Society2012 May 27423-3022475061
Dissociable large-scale networks anchored in the right anterior insula subserve affective experience and attention.Touroutoglou, Alexandra; Hollenbeck, Mark; Dickerson, Bradford C; Feldman Barrett, LisaNeuroImage2012 May 11947-5822361166
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.Pride, David T; Salzman, Julia; Haynes, Matthew; Rohwer, Forest; Davis-Long, Clara; White 3rd, Richard A; Loomer, Peter; Armitage, Gary C; Relman, David AThe ISME journal2012 May915-2622158393
A founder mutation in LEPRE1 carried by 1.5% of West Africans and 0.4% of African Americans causes lethal recessive osteogenesis imperfecta.Cabral, Wayne A; Barnes, Aileen M; Adeyemo, Adebowale; Cushing, Kelly; Chitayat, David; Porter, Forbes D; Panny, Susan R; Gulamali-Majid, Fizza; Tishkoff, Sarah A; Rebbeck, Timothy R; Gueye, Serigne M; Bailey-Wilson, Joan E; Brody, Lawrence C; Rotimi, ChaGenetics in medicine : official journal of the American College of Medical Genetics2012 May543-5122281939
High-side digitally current controlled biphasic bipolar microstimulator.Hanson, Timothy L; Omarsson, Bjorn; O'Doherty, Joseph E; Peikon, Ian D; Lebedev, Mikhail A; Nicolelis, Miguel A LIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society2012 May331-4022328184
Following the fate of one insulin-reactive CD4 T cell: conversion into Teffs and Tregs in the periphery controls diabetes in NOD mice.Fousteri, Georgia; Jasinski, Jean; Dave, Amy; Nakayama, Maki; Pagni, Philippe; Lambolez, Florence; Juntti, Therese; Sarikonda, Ghanashyam; Cheng, Yang; Croft, Michael; Cheroutre, Hilde; Eisenbarth, George; von Herrath, MatthiasDiabetes2012 May1169-7922403296
Signaling-mediated bacterial persister formation.Vega, Nicole M; Allison, Kyle R; Khalil, Ahmad S; Collins, James JNature chemical biology2012 May431-322426114
Report of the National Heart, Lung, and Blood Institute Working Group on epigenetics and hypertension.Cowley Jr, Allen W; Nadeau, Joseph H; Baccarelli, Andrea; Berecek, Kathleen; Fornage, Myriam; Gibbons, Gary H; Harrison, David G; Liang, Mingyu; Nathanielsz, Peter W; O'Connor, Daniel T; Ordovas, Jose; Peng, Weiqun; Soares, Marcelo Bento; Szyf, Moshe; TolHypertension2012 May899-90522431584
Active emergence from propofol general anesthesia is induced by methylphenidate.Chemali, Jessica J; Van Dort, Christa J; Brown, Emery N; Solt, KenAnesthesiology2012 May998-100522446983
A conserved cell growth cycle can account for the environmental stress responses of divergent eukaryotes.Slavov, Nikolai; Airoldi, Edoardo M; van Oudenaarden, Alexander; Botstein, DavidMolecular biology of the cell2012 May1986-9722456505
Perspectives on cell reprogramming with RNA.Sul, Jai-Yoon; Kim, Tae Kyung; Lee, Jae Hee; Eberwine, JamesTrends in biotechnology2012 May243-922459515
Six developmental trajectories characterize children with autism.Fountain, Christine; Winter, Alix S; Bearman, Peter SPediatrics2012 Maye1112-2022473372
FLASH assembly of TALENs for high-throughput genome editing.Reyon, Deepak; Tsai, Shengdar Q; Khayter, Cyd; Foden, Jennifer A; Sander, Jeffry D; Joung, J KeithNature biotechnology2012 May460-522484455
Revisiting the role of the granuloma in tuberculosis.Ramakrishnan, LalitaNature reviews. Immunology2012 May352-6622517424
Trends in ambulatory self-report: the role of momentary experience in psychosomatic medicine.Conner, Tamlin S; Barrett, Lisa FeldmanPsychosomatic medicine2012 May327-3722582330
A role for cytomegalovirus-specific CD4+CX3CR1+ T cells and cytomegalovirus-induced T-cell immunopathology in HIV-associated atherosclerosis.Sacre, Karim; Hunt, Peter W; Hsue, Priscilla Y; Maidji, Ekaterina; Martin, Jeffrey N; Deeks, Steven G; Autran, Brigitte; McCune, Joseph MAIDS (London, England)2012 Apr 24805-1422313962
Direct observation of nanoparticle-cancer cell nucleus interactions.Dam, Duncan Hieu M; Lee, Jung Heon; Sisco, Patrick N; Co, Dick T; Zhang, Ming; Wasielewski, Michael R; Odom, Teri WACS nano2012 Apr 243318-2622424173
Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics.Foti, James J; Devadoss, Babho; Winkler, Jonathan A; Collins, James J; Walker, Graham CScience (New York, N.Y.)2012 Apr 20315-922517853
A unique regulatory phase of DNA methylation in the early mammalian embryo.Smith, Zachary D; Chan, Michelle M; Mikkelsen, Tarjei S; Gu, Hongcang; Gnirke, Andreas; Regev, Aviv; Meissner, AlexanderNature2012 Apr 19339-4422456710
Using gene expression noise to understand gene regulation.Munsky, Brian; Neuert, Gregor; van Oudenaarden, AlexanderScience (New York, N.Y.)2012 Apr 13183-722499939
Blood T-cell receptor diversity decreases during the course of HIV infection, but the potential for a diverse repertoire persists.Baum, Paul D; Young, Jennifer J; Schmidt, Diane; Zhang, Qianjun; Hoh, Rebecca; Busch, Michael; Martin, Jeffrey; Deeks, Steven; McCune, Joseph MBlood2012 Apr 123469-7722371879
Genetic switchboard for synthetic biology applications.Callura, Jarred M; Cantor, Charles R; Collins, James JProceedings of the National Academy of Sciences of the United States of America2012 Apr 105850-522454498
The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome.Kuo, Alex J; Song, Jikui; Cheung, Peggie; Ishibe-Murakami, Satoko; Yamazoe, Sayumi; Chen, James K; Patel, Dinshaw J; Gozani, OrNature2012 Apr 5115-922398447
A reliable protocol for the manual segmentation of the human amygdala and its subregions using ultra-high resolution MRI.Entis, Jonathan J; Doerga, Priya; Barrett, Lisa Feldman; Dickerson, Bradford CNeuroImage2012 Apr 21226-3522245260
Interaction of ýý-synuclein and a cell penetrating fusion peptide with higher eukaryotic cell membranes assessed by ýýýýýF NMR.Zigoneanu, Imola G; Pielak, Gary JMolecular pharmaceutics2012 Apr 21024-922376087
Variations in the heme oxygenase-1 microsatellite polymorphism are associated with plasma CD14 and viral load in HIV-infected African-Americans.Seu, L; Burt, T D; Witte, J S; Martin, J N; Deeks, S G; McCune, J MGenes and immunity2012 Apr258-6722048453
Evolution of functionally diverse alleles associated with PTC bitter taste sensitivity in Africa.Campbell, Michael C; Ranciaro, Alessia; Froment, Alain; Hirbo, Jibril; Omar, Sabah; Bodo, Jean-Marie; Nyambo, Thomas; Lema, Godfrey; Zinshteyn, Daniel; Drayna, Dennis; Breslin, Paul A S; Tishkoff, Sarah AMolecular biology and evolution2012 Apr1141-5322130969
Glutathione-dependent reductive stress triggers mitochondrial oxidation and cytotoxicity.Zhang, Huali; Limphong, Pattraranee; Pieper, Joel; Liu, Qiang; Rodesch, Christopher K; Christians, Elisabeth; Benjamin, Ivor JFASEB journal : official publication of the Federation of American Societies for Experimental Biology2012 Apr1442-5122202674
Cohort effects explain the increase in autism diagnosis among children born from 1992 to 2003 in California.Keyes, Katherine M; Susser, Ezra; Cheslack-Postava, Keely; Fountain, Christine; Liu, Kayuet; Bearman, Peter SInternational journal of epidemiology2012 Apr495-50322253308
Emotion words shape emotion percepts.Gendron, Maria; Lindquist, Kristen A; Barsalou, Lawrence; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2012 Apr314-2522309717
Avian intervertebral disc arises from rostral sclerotome and lacks a nucleus pulposus: implications for evolution of the vertebrate disc.Bruggeman, Bradley J; Maier, Jennifer A; Mohiuddin, Yasmin S; Powers, Rae; Lo, Yinting; Guimaraes-Camboa, Nuno; Evans, Sylvia M; Harfe, Brian DDevelopmental dynamics : an official publication of the American Association of Anatomists2012 Apr675-8322354863
MicroRNAs regulate B-cell receptor signaling-induced apoptosis.Kluiver, J L; Chen, C-ZGenes and immunity2012 Apr239-4422357493
Regulation of nuclear PKA revealed by spatiotemporal manipulation of cyclic AMP.Sample, Vedangi; DiPilato, Lisa M; Yang, Jason H; Ni, Qiang; Saucerman, Jeffrey J; Zhang, JinNature chemical biology2012 Apr375-8222366721
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses.Vogel, Christine; Marcotte, Edward MNature reviews. Genetics2012 Apr227-3222411467
A recurrent neural network for closed-loop intracortical brain-machine interface decoders.Sussillo, David; Nuyujukian, Paul; Fan, Joline M; Kao, Jonathan C; Stavisky, Sergey D; Ryu, Stephen; Shenoy, KrishnaJournal of neural engineering2012 Apr02602722427488
Altered inhibition in tuberous sclerosis and type IIb cortical dysplasia.Talos, Delia M; Sun, Hongyu; Kosaras, Bela; Joseph, Annelise; Folkerth, Rebecca D; Poduri, Annapurna; Madsen, Joseph R; Black, Peter M; Jensen, Frances EAnnals of neurology2012 Apr539-5122447678
FoldEco: a model for proteostasis in E. coli.Powers, Evan T; Powers, David L; Gierasch, Lila MCell reports2012 Mar 29265-7622509487
Eye movements modulate the spatiotemporal dynamics of word processing.Temereanca, Simona; Hamalainen, Matti S; Kuperberg, Gina R; Stufflebeam, Steve M; Halgren, Eric; Brown, Emery NThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Mar 284482-9422457496
DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees.Foret, Sylvain; Kucharski, Robert; Pellegrini, Matteo; Feng, Suhua; Jacobsen, Steven E; Robinson, Gene E; Maleszka, RyszardProceedings of the National Academy of Sciences of the United States of America2012 Mar 274968-7322416128
Regulated noise in the epigenetic landscape of development and disease.Pujadas, Elisabet; Feinberg, Andrew PCell2012 Mar 161123-3122424224
Large-scale integration of nanoelectromechanical systems for gas sensing applications.Bargatin, I; Myers, E B; Aldridge, J S; Marcoux, C; Brianceau, P; Duraffourg, L; Colinet, E; Hentz, S; Andreucci, P; Roukes, M LNano letters2012 Mar 141269-7422280452
Kinked p-n junction nanowire probes for high spatial resolution sensing and intracellular recording.Jiang, Zhe; Qing, Quan; Xie, Ping; Gao, Ruixuan; Lieber, Charles MNano letters2012 Mar 141711-622309132
Molecular determinants of scouting behavior in honey bees.Liang, Zhengzheng S; Nguyen, Trang; Mattila, Heather R; Rodriguez-Zas, Sandra L; Seeley, Thomas D; Robinson, Gene EScience (New York, N.Y.)2012 Mar 91225-822403390
Loom-sensitive neurons link computation to action in the Drosophila visual system.de Vries, Saskia E J; Clandinin, Thomas RCurrent biology : CB2012 Mar 6353-6222305754
Requirements for contractility in disordered cytoskeletal bundles.Lenz, Martin; Gardel, Margaret L; Dinner, Aaron RNew journal of physics2012 Mar 123155355
Interaction of *-synuclein with vesicles that mimic mitochondrial membranes.Zigoneanu, Imola G; Yang, Yoo Jeong; Krois, Alexander S; Haque, Emdadul; Pielak, Gary JBiochimica et biophysica acta2012 Mar512-922155643
Intracellular recordings of action potentials by an extracellular nanoscale field-effect transistor.Duan, Xiaojie; Gao, Ruixuan; Xie, Ping; Cohen-Karni, Tzahi; Qing, Quan; Choe, Hwan Sung; Tian, Bozhi; Jiang, Xiaocheng; Lieber, Charles MNature nanotechnology2012 Mar174-922179566
Broad range of neural dynamics from a time-varying FitzHugh-Nagumo model and its spiking threshold estimation.Faghih, Rose T; Savla, Ketan; Dahleh, Munther A; Brown, Emery NIEEE transactions on bio-medical engineering2012 Mar816-2322186931
Vertical nanowire electrode arrays as a scalable platform for intracellular interfacing to neuronal circuits.Robinson, Jacob T; Jorgolli, Marsela; Shalek, Alex K; Yoon, Myung-Han; Gertner, Rona S; Park, HongkunNature nanotechnology2012 Mar180-422231664
Chronic in vivo imaging in the mouse spinal cord using an implanted chamber.Farrar, Matthew J; Bernstein, Ida M; Schlafer, Donald H; Cleland, Thomas A; Fetcho, Joseph R; Schaffer, Chris BNature methods2012 Mar297-30222266542
Spatiotemporal resolution of the Ntla transcriptome in axial mesoderm development.Shestopalov, Ilya A; Pitt, Cameron L W; Chen, James KNature chemical biology2012 Mar270-622286130
Point process time-frequency analysis of dynamic respiratory patterns during meditation practice.Kodituwakku, Sandun; Lazar, Sara W; Indic, Premananda; Chen, Zhe; Brown, Emery N; Barbieri, RiccardoMedical & biological engineering & computing2012 Mar261-7522350435
Connecting Type 1 and Type 2 Diabetes through Innate Immunity.Odegaard, Justin I; Chawla, AjayCold Spring Harbor perspectives in medicine2012 Mara00772422393536
Modifying the pores of an inverse opal scaffold with chitosan microstructures for truly three-dimensional cell culture.Zhang, Yu; Choi, Sung-Wook; Xia, YounanMacromolecular rapid communications2012 Feb 27296-30122231861
Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment.Bumgarner, Stacie L; Neuert, Gregor; Voight, Benjamin F; Symbor-Nagrabska, Anna; Grisafi, Paula; van Oudenaarden, Alexander; Fink, Gerald RMolecular cell2012 Feb 24470-8222264825
Disease tolerance as a defense strategy.Medzhitov, Ruslan; Schneider, David S; Soares, Miguel PScience (New York, N.Y.)2012 Feb 24936-4122363001
Functional biases in visual cortex neurons with identified projections to higher cortical targets.Jarosiewicz, Beata; Schummers, James; Malik, Wasim Q; Brown, Emery N; Sur, MrigankaCurrent biology : CB2012 Feb 21269-7722305753
A neurophysiological-metabolic model for burst suppression.Ching, Shinung; Purdon, Patrick L; Vijayan, Sujith; Kopell, Nancy J; Brown, Emery NProceedings of the National Academy of Sciences of the United States of America2012 Feb 213095-10022323592
A high-throughput fluorescence polarization anisotropy assay for the 70N domain of replication protein A.Souza-Fagundes, Elaine M; Frank, Andreas O; Feldkamp, Michael D; Dorset, Daniel C; Chazin, Walter J; Rossanese, Olivia W; Olejniczak, Edward T; Fesik, Stephen WAnalytical biochemistry2012 Feb 15742-922197419
Loss of autophagy in pro-opiomelanocortin neurons perturbs axon growth and causes metabolic dysregulation.Coupe, Berengere; Ishii, Yuko; Dietrich, Marcelo O; Komatsu, Masaaki; Horvath, Tamas L; Bouret, Sebastien GCell metabolism2012 Feb 8247-5522285542
Confinement of gene drive systems to local populations: a comparative analysis.Marshall, John M; Hay, Bruce AJournal of theoretical biology2012 Feb 7153-7122094363
Thymosin beta 4 is dispensable for murine cardiac development and function.Banerjee, Indroneal; Zhang, Jianlin; Moore-Morris, Thomas; Lange, Stephan; Shen, Tao; Dalton, Nancy D; Gu, Yusu; Peterson, Kirk L; Evans, Sylvia M; Chen, JuCirculation research2012 Feb 3456-6422158707
Host genotype-specific therapies can optimize the inflammatory response to mycobacterial infections.Tobin, David M; Roca, Francisco J; Oh, Sungwhan F; McFarland, Ross; Vickery, Thad W; Ray, John P; Ko, Dennis C; Zou, Yuxia; Bang, Nguyen D; Chau, Tran T H; Vary, Jay C; Hawn, Thomas R; Dunstan, Sarah J; Farrar, Jeremy J; Thwaites, Guy E; King, Mary-ClaireCell2012 Feb 3434-4622304914
Modular genetic control of sexually dimorphic behaviors.Xu, Xiaohong; Coats, Jennifer K; Yang, Cindy F; Wang, Amy; Ahmed, Osama M; Alvarado, Maricruz; Izumi, Tetsuro; Shah, Nirao MCell2012 Feb 3596-60722304924
Optimality in the development of intestinal crypts.Itzkovitz, Shalev; Blat, Irene C; Jacks, Tyler; Clevers, Hans; van Oudenaarden, AlexanderCell2012 Feb 3608-1922304925
Hematopoietic-stem-cell-based gene therapy for HIV disease.Kiem, Hans-Peter; Jerome, Keith R; Deeks, Steven G; McCune, Joseph MCell stem cell2012 Feb 3137-4722305563
Organization of vomeronasal sensory coding revealed by fast volumetric calcium imaging.Turaga, Diwakar; Holy, Timothy EThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Feb 11612-2122302803
Prospect for feedback guided surgery with ultra-short pulsed laser light.Jeong, Diana C; Tsai, Philbert S; Kleinfeld, DavidCurrent opinion in neurobiology2012 Feb24-3322088392
Synthesis of monolithic graphene-graphite integrated electronics.Park, Jang-Ung; Nam, SungWoo; Lee, Mi-Sun; Lieber, Charles MNature materials2012 Feb120-522101813
Local electrical potential detection of DNA by nanowire-nanopore sensors.Xie, Ping; Xiong, Qihua; Fang, Ying; Qing, Quan; Lieber, Charles MNature nanotechnology2012 Feb119-2522157724
Balancing repair and tolerance of DNA damage caused by alkylating agents.Fu, Dragony; Calvo, Jennifer A; Samson, Leona DNature reviews. Cancer2012 Feb104-2022237395
Quantitative analysis of the role played by poly(vinylpyrrolidone) in seed-mediated growth of Ag nanocrystals.Xia, Xiaohu; Zeng, Jie; Oetjen, L Kyle; Li, Qingge; Xia, YounanJournal of the American Chemical Society2012 Jan 251793-80122206387
Quantifying the coverage density of poly(ethylene glycol) chains on the surface of gold nanostructures.Xia, Xiaohu; Yang, Miaoxin; Wang, Yucai; Zheng, Yiqun; Li, Qingge; Chen, Jingyi; Xia, YounanACS nano2012 Jan 24512-2222148912
SV119-gold nanocage conjugates: a new platform for targeting cancer cells via sigma-2 receptors.Wang, Yucai; Xu, Jinbin; Xia, Xiaohu; Yang, Miaoxin; Vangveravong, Suwanna; Chen, Jingyi; Mach, Robert H; Xia, YounanNanoscale2012 Jan 21421-422113350
Extraordinary nonlinear absorption in 3D bowtie nanoantennas.Suh, Jae Yong; Huntington, Mark D; Kim, Chul Hoon; Zhou, Wei; Wasielewski, Michael R; Odom, Teri WNano letters2012 Jan 11269-7422149352
Delivery of multiple siRNAs using lipid-coated PLGA nanoparticles for treatment of prostate cancer.Hasan, Warefta; Chu, Kevin; Gullapalli, Anuradha; Dunn, Stuart S; Enlow, Elizabeth M; Luft, J Christopher; Tian, Shaomin; Napier, Mary E; Pohlhaus, Patrick D; Rolland, Jason P; DeSimone, Joseph MNano letters2012 Jan 11287-9222165988
Electrospun nanofibers for regenerative medicine.Liu, Wenying; Thomopoulos, Stavros; Xia, YounanAdvanced healthcare materials2012 Jan 1110-2523184683
Genetic dissection reveals two separate retinal substrates for polarization vision in Drosophila.Wernet, Mathias F; Velez, Mariel M; Clark, Damon A; Baumann-Klausener, Franziska; Brown, Julian R; Klovstad, Martha; Labhart, Thomas; Clandinin, Thomas RCurrent biology : CB2012 Jan 1012-2022177904
Obesity is associated with hypothalamic injury in rodents and humans.Thaler, Joshua P; Yi, Chun-Xia; Schur, Ellen A; Guyenet, Stephan J; Hwang, Bang H; Dietrich, Marcelo O; Zhao, Xiaolin; Sarruf, David A; Izgur, Vitaly; Maravilla, Kenneth R; Nguyen, Hong T; Fischer, Jonathan D; Matsen, Miles E; Wisse, Brent E; Morton, GregThe Journal of clinical investigation2012 Jan 3153-6222201683
The microRNA regulation of stem cells.Huang, Xiao Albert; Lin, HaifanWiley interdisciplinary reviews. Developmental biology2012 Jan-Feb83-9523801669
Proteostasis and REDOX state in the heart.Christians, Elisabeth S; Benjamin, Ivor JAmerican journal of physiology. Heart and circulatory physiology2012 Jan 1H24-3722003057
The miRNA Regulation of Stem Cells.Huang, Xiao Albert; Lin, HaifanWiley interdisciplinary reviews. Membrane transport and signaling2012 Jan 183-9523024929
Early postmyocardial infarction survival in Murphy Roths Large mice is mediated by attenuated apoptosis and inflammation but depends on genetic background.Hunt, Darlene L; Campbell, Patrick H; Zambon, Alexander C; Vranizan, Karen; Evans, Sylvia M; Kuo, Hai-Chien; Yamaguchi, Ken D; Omens, Jeffrey H; McCulloch, Andrew DExperimental physiology2012 Jan102-1421967898
Single-molecule transcript counting of stem-cell markers in the mouse intestine.Itzkovitz, Shalev; Lyubimova, Anna; Blat, Irene C; Maynard, Mindy; van Es, Johan; Lees, Jacqueline; Jacks, Tyler; Clevers, Hans; van Oudenaarden, AlexanderNature cell biology2012 Jan106-1422119784
Decoding cell lineage from acquired mutations using arbitrary deep sequencing.Carlson, Cheryl A; Kas, Arnold; Kirkwood, Robert; Hays, Laura E; Preston, Bradley D; Salipante, Stephen J; Horwitz, Marshall SNature methods2012 Jan78-8022120468
Microbial environments confound antibiotic efficacy.Lee, Henry H; Collins, James JNature chemical biology2012 Jan6-922173343
Virtual active touch using randomly patterned intracortical microstimulation.O'Doherty, Joseph E; Lebedev, Mikhail A; Li, Zheng; Nicolelis, Miguel A LIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society2012 Jan85-9322207642
Tolerance of infections.Ayres, Janelle S; Schneider, David SAnnual review of immunology2012271-9422224770
MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis.Chindelevitch, Leonid; Stanley, Sarah; Hung, Deborah; Regev, Aviv; Berger, BonnieGenome biology2012r622292986
Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting.Maynard, Nathaniel D; Macklin, Derek N; Kirkegaard, Karla; Covert, Markus WMolecular systems biology201256722294093
Gene delivery to the retina: from mouse to man.Bennett, Jean; Chung, Daniel C; Maguire, AlbertMethods in enzymology2012255-7422365778
State-space analysis of time-varying higher-order spike correlation for multiple neural spike train data.Shimazaki, Hideaki; Amari, Shun-Ichi; Brown, Emery N; Grun, SonjaPLoS computational biology2012e100238522412358
Single-cell census of mechanosensitive channels in living bacteria.Bialecka-Fornal, Maja; Lee, Heun Jin; DeBerg, Hannah A; Gandhi, Chris S; Phillips, RobPloS one2012e3307722427953
A polished and reinforced thinned-skull window for long-term imaging of the mouse brain.Shih, Andy Y; Mateo, Celine; Drew, Patrick J; Tsai, Philbert S; Kleinfeld, DavidJournal of visualized experiments : JoVE201222433225
Entropic tension in crowded membranes.Linden, Martin; Sens, Pierre; Phillips, RobPLoS computational biology2012e100243122438801
Regional differences in susceptibility to hypoxic-ischemic injury in the preterm brain: exploring the spectrum from white matter loss to selective grey matter injury in a rat model.Selip, D B; Jantzie, L L; Chang, M; Jackson, M C; Fitzgerald, E C; Boll, G; Murphy, A; Jensen, F ENeurology research international201272518422530125
Beyond homeostasis: a predictive-dynamic framework for understanding cellular behavior.Freddolino, Peter L; Tavazoie, SaeedAnnual review of cell and developmental biology2012363-8422559263
The interaction between early life epilepsy and autistic-like behavioral consequences: a role for the mammalian target of rapamycin (mTOR) pathway.Talos, Delia M; Sun, Hongyu; Zhou, Xiangping; Fitzgerald, Erin C; Jackson, Michele C; Klein, Peter M; Lan, Victor J; Joseph, Annelise; Jensen, Frances EPloS one2012e3588522567115
Single cell profiling of circulating tumor cells: transcriptional heterogeneity and diversity from breast cancer cell lines.Powell, Ashley A; Talasaz, Amirali H; Zhang, Haiyu; Coram, Marc A; Reddy, Anupama; Deng, Glenn; Telli, Melinda L; Advani, Ranjana H; Carlson, Robert W; Mollick, Joseph A; Sheth, Shruti; Kurian, Allison W; Ford, James M; Stockdale, Frank E; Quake, Stephen PloS one2012e3378822586443
Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs).Moore, Finola E; Reyon, Deepak; Sander, Jeffry D; Martinez, Sarah A; Blackburn, Jessica S; Khayter, Cyd; Ramirez, Cherie L; Joung, J Keith; Langenau, David MPloS one2012e3787722655075
Generation of induced pluripotent stem cells from the prairie vole.Manoli, Devanand S; Subramanyam, Deepa; Carey, Catriona; Sudin, Erik; Van Westerhuyzen, Julie A; Bales, Karen L; Blelloch, Robert; Shah, Nirao MPloS one2012e3811922675440
Hydroxychloroquine is associated with impaired interferon-alpha and tumor necrosis factor-alpha production by plasmacytoid dendritic cells in systemic lupus erythematosus.Sacre, Karim; Criswell, Lindsey A; McCune, Joseph MArthritis research & therapy2012R15522734582
Context matters: the illusive simplicity of macaque V1 receptive fields.Haslinger, Robert; Pipa, Gordon; Lima, Bruss; Singer, Wolf; Brown, Emery N; Neuenschwander, SergioPloS one2012e3969922802940
Mechanisms of intracellular scaling.Levy, Daniel L; Heald, RebeccaAnnual review of cell and developmental biology2012113-3522804576
Reprogramming movements: extraction of motor intentions from cortical ensemble activity when movement goals change.Ifft, Peter J; Lebedev, Mikhail A; Nicolelis, Miguel A LFrontiers in neuroengineering20121622826698
Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains.Cong, Le; Zhou, Ruhong; Kuo, Yu-Chi; Cunniff, Margaret; Zhang, FengNature communications201296822828628
The disappearing seasonality of autism conceptions in California.Mazumdar, Soumya; Liu, Ka-Yuet; Susser, Ezra; Bearman, PeterPloS one2012e4126522859972
HSPB2 is dispensable for the cardiac hypertrophic response but reduces mitochondrial energetics following pressure overload in mice.Ishiwata, Takahiro; Orosz, Andras; Wang, Xiaohui; Mustafi, Soumyajit Banerjee; Pratt, Gregory W; Christians, Elisabeth S; Boudina, Sihem; Abel, E Dale; Benjamin, Ivor JPloS one2012e4211822870288
UCP2 induced by natural birth regulates neuronal differentiation of the hippocampus and related adult behavior.Simon-Areces, Julia; Dietrich, Marcelo O; Hermes, Gretchen; Garcia-Segura, Luis Miguel; Arevalo, Maria-Angeles; Horvath, Tamas LPloS one2012e4291122905184
Modulating the strength and threshold of NOTCH oncogenic signals by mir-181a-1/b-1.Fragoso, Rita; Mao, Tin; Wang, Song; Schaffert, Steven; Gong, Xue; Yue, Sibiao; Luong, Richard; Min, Hyeyoung; Yashiro-Ohtani, Yumi; Davis, Mark; Pear, Warren; Chen, Chang-ZhengPLoS genetics2012e100285522916024
Upregulation of retinal dehydrogenase 2 in alternatively activated macrophages during retinoid-dependent type-2 immunity to helminth infection in mice.Broadhurst, Mara J; Leung, Jacqueline M; Lim, K C; Girgis, Natasha M; Gundra, Uma Mahesh; Fallon, Padraic G; Premenko-Lanier, Mary; McKerrow, James H; McCune, Joseph M; Loke, P'ngPLoS pathogens2012e100288322927819
Pretreatment of Asian elephant (Elephas maximus) spermatozoa with cholesterol-loaded cyclodextrins and glycerol addition at 4ýýC improves cryosurvival.Kiso, Wendy K; Asano, Atsushi; Travis, Alexander J; Schmitt, Dennis L; Brown, Janine L; Pukazhenthi, Budhan SReproduction, fertility, and development20121134-4222954260
The enzymatic and metabolic capabilities of early life.Goldman, Aaron David; Baross, John A; Samudrala, RamPloS one2012e3991222970111
Understanding the relationship between brain gene expression and social behavior: lessons from the honey bee.Zayed, Amro; Robinson, Gene EAnnual review of genetics2012591-61522994354
The genetic prehistory of southern Africa.Pickrell, Joseph K; Patterson, Nick; Barbieri, Chiara; Berthold, Falko; Gerlach, Linda; Guldemann, Tom; Kure, Blesswell; Mpoloka, Sununguko Wata; Nakagawa, Hirosi; Naumann, Christfried; Lipson, Mark; Loh, Po-Ru; Lachance, Joseph; Mountain, Joanna; BustamaNature communications2012114323072811
Determining host metabolic limitations on viral replication via integrated modeling and experimental perturbation.Birch, Elsa W; Ruggero, Nicholas A; Covert, Markus WPLoS computational biology2012e100274623093930
Recent Developments in Shape-Controlled Synthesis of Silver Nanocrystals.Xia, Xiaohu; Zeng, Jie; Zhang, Qiang; Moran, Christine H; Xia, YounanThe journal of physical chemistry. C, Nanomaterials and interfaces201221647-2165623105955
Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon.Broadhurst, Mara Jana; Ardeshir, Amir; Kanwar, Bittoo; Mirpuri, Julie; Gundra, Uma Mahesh; Leung, Jacqueline M; Wiens, Kirsten E; Vujkovic-Cvijin, Ivan; Kim, Charlie C; Yarovinsky, Felix; Lerche, Nicholas W; McCune, Joseph M; Loke, P'ngPLoS pathogens2012e100300023166490
Tuning promoter strength through RNA polymerase binding site design in Escherichia coli.Brewster, Robert C; Jones, Daniel L; Phillips, RobPLoS computational biology2012e100281123271961
How the fly balances its ability to combat different pathogens.Chambers, Moria C; Lightfield, Karla L; Schneider, David SPLoS pathogens2012e100297023271964
Listeria monocytogenes infection causes metabolic shifts in Drosophila melanogaster.Chambers, Moria C; Song, Kyung Han; Schneider, David SPloS one2012e5067923272066
A superposable silicon synapse with programmable reversal potential.Benjamin, Ben V; Arthur, John V; Gao, Peiran; Merolla, Paul; Boahen, KwabenaConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference2012771-423366006
Transductive neural decoding for unsorted neuronal spikes of rat hippocampus.Chen, Zhe; Kloosterman, Fabian; Layton, Stuart; Wilson, Matthew AConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20121310-323366139
A brain machine interface control algorithm designed from a feedback control perspective.Gilja, Vikash; Nuyujukian, Paul; Chestek, Cindy A; Cunningham, John P; Yu, Byron M; Fan, Joline M; Ryu, Stephen I; Shenoy, Krishna VConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20121318-2223366141
A framework for relating neural activity to freely moving behavior.Foster, Justin D; Nuyujukian, Paul; Freifeld, Oren; Ryu, Stephen I; Black, Michael J; Shenoy, Krishna VConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20122736-923366491
Beamforming approach to phase-amplitude modulation analysis of multi-channel EEG.Sampson, A L; Babadi, B; Prerau, M J; Mukamel, E A; Brown, E N; Purdon, P LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20126731-423367474
A fast iterative greedy algorithm for MEG source localization.Obregon-Henao, G; Babadi, B; Lamus, C; Brown, E N; Purdon, P LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20126748-5123367478
A spatially-regularized dynamic source localization algorithm for EEG.Pirondini, E; Babadi, B; Lamus, C; Brown, E N; Purdon, P LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20126752-523367479
In vivo quantitative evaluation of the transport kinetics of gold nanocages in a lymphatic system by noninvasive photoacoustic tomography.Cai, Xin; Li, Weiyang; Kim, Chul-Hong; Yuan, Yuchen; Wang, Lihong V; Xia, YounanACS nano2011 Dec 279658-6722054348
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells.Ram, Oren; Goren, Alon; Amit, Ido; Shoresh, Noam; Yosef, Nir; Ernst, Jason; Kellis, Manolis; Gymrek, Melissa; Issner, Robbyn; Coyne, Michael; Durham, Timothy; Zhang, Xiaolan; Donaghey, Julie; Epstein, Charles B; Regev, Aviv; Bernstein, Bradley ECell2011 Dec 231628-3922196736
Sustained axon regeneration induced by co-deletion of PTEN and SOCS3.Sun, Fang; Park, Kevin K; Belin, Stephane; Wang, Dongqing; Lu, Tao; Chen, Gang; Zhang, Kang; Yeung, Cecil; Feng, Guoping; Yankner, Bruce A; He, ZhigangNature2011 Dec 15372-522056987
CPG15 regulates synapse stability in the developing and adult brain.Fujino, Tadahiro; Leslie, Jennifer H; Eavri, Ronen; Chen, Jerry L; Lin, Walter C; Flanders, Genevieve H; Borok, Erzsebet; Horvath, Tamas L; Nedivi, EllyGenes & development2011 Dec 152674-8522190461
Hypoxia-induced neonatal seizures diminish silent synapses and long-term potentiation in hippocampal CA1 neurons.Zhou, Chengwen; Lippman, Jocelyn J Bell; Sun, Hongyu; Jensen, Frances EThe Journal of neuroscience : the official journal of the Society for Neuroscience2011 Dec 1418211-2222171027
Katanin contributes to interspecies spindle length scaling in Xenopus.Loughlin, Rose; Wilbur, Jeremy D; McNally, Francis J; Nedelec, Francois J; Heald, RebeccaCell2011 Dec 91397-40722153081
Alternatively activated macrophages produce catecholamines to sustain adaptive thermogenesis.Nguyen, Khoa D; Qiu, Yifu; Cui, Xiaojin; Goh, Y P Sharon; Mwangi, Julia; David, Tovo; Mukundan, Lata; Brombacher, Frank; Locksley, Richard M; Chawla, AjayNature2011 Dec 1104-822101429
Semiconductor nanowires: A platform for nanoscience and nanotechnology.Lieber, Charles MMRS bulletin / Materials Research Society2011 Dec 11052-106322707850
Adaptive decoding for brain-machine interfaces through Bayesian parameter updates.Li, Zheng; O'Doherty, Joseph E; Lebedev, Mikhail A; Nicolelis, Miguel A LNeural computation2011 Dec3162-20421919788
Strategies to discover regulatory circuits of the mammalian immune system.Amit, Ido; Regev, Aviv; Hacohen, NirNature reviews. Immunology2011 Dec873-8022094988
Haplotype variation and genotype imputation in African populations.Huang, Lucy; Jakobsson, Mattias; Pemberton, Trevor J; Ibrahim, Muntaser; Nyambo, Thomas; Omar, Sabah; Pritchard, Jonathan K; Tishkoff, Sarah A; Rosenberg, Noah AGenetic epidemiology2011 Dec766-8022125220
Genomic rearrangement in three dimensions.Hastings, P J; Rosenberg, Susan MNature biotechnology2011 Dec1096-822158363
A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster.Yin, Hang; Sweeney, Sarah; Raha, Debasish; Snyder, Michael; Lin, HaifanPLoS genetics2011 Dece100238022194694
The Caenorhabditis elegans synthetic multivulva genes prevent ras pathway activation by tightly repressing global ectopic expression of lin-3 EGF.Saffer, Adam M; Kim, Dong Hyun; van Oudenaarden, Alexander; Horvitz, H RobertPLoS genetics2011 Dece100241822242000
A Distributed Platform for Global-Scale Agent-Based Models of Disease Transmission.Parker, Jon; Epstein, Joshua MACM transactions on modeling and computer simulation : a publication of the Association for Computing Machinery2011 Dec224465120
A spatiotemporal dynamic distributed solution to the MEG inverse problem.Lamus, Camilo; Hamalainen, Matti S; Temereanca, Simona; Brown, Emery N; Purdon, Patrick LNeuroImage2011 Nov 3022155043
Abacavir increases platelet reactivity via competitive inhibition of soluble guanylyl cyclase.Baum, Paul D; Sullam, Paul M; Stoddart, Cheryl A; McCune, Joseph MAIDS (London, England)2011 Nov 282243-821941165
Mitotic chromosome size scaling in Xenopus.Kieserman, Esther K; Heald, RebeccaCell cycle (Georgetown, Tex.)2011 Nov 153863-7022071695
Systematic discovery of TLR signaling components delineates viral-sensing circuits.Chevrier, Nicolas; Mertins, Philipp; Artyomov, Maxim N; Shalek, Alex K; Iannacone, Matteo; Ciaccio, Mark F; Gat-Viks, Irit; Tonti, Elena; DeGrace, Marciela M; Clauser, Karl R; Garber, Manuel; Eisenhaure, Thomas M; Yosef, Nir; Robinson, Jacob; Sutton, Amy;Cell2011 Nov 11853-6722078882
Active tactile exploration using a brain-machine-brain interface.O'Doherty, Joseph E; Lebedev, Mikhail A; Ifft, Peter J; Zhuang, Katie Z; Shokur, Solaiman; Bleuler, Hannes; Nicolelis, Miguel A LNature2011 Nov 10228-3121976021
Multiplexed quantification of nucleic acids with large dynamic range using multivolume digital RT-PCR on a rotational SlipChip tested with HIV and hepatitis C viral load.Shen, Feng; Sun, Bing; Kreutz, Jason E; Davydova, Elena K; Du, Wenbin; Reddy, Poluru L; Joseph, Loren J; Ismagilov, Rustem FJournal of the American Chemical Society2011 Nov 917705-1221995644
Large-scale automated histology in the pursuit of connectomes.Kleinfeld, David; Bharioke, Arjun; Blinder, Pablo; Bock, Davi D; Briggman, Kevin L; Chklovskii, Dmitri B; Denk, Winfried; Helmstaedter, Moritz; Kaufhold, John P; Lee, Wei-Chung Allen; Meyer, Hanno S; Micheva, Kristina D; Oberlaender, Marcel; Prohaska, SteThe Journal of neuroscience : the official journal of the Society for Neuroscience2011 Nov 916125-3822072665
Loop nucleotides control primary and mature miRNA function in target recognition and repression.Yue, Si-Biao; Trujillo, Robin Deis; Tang, Yujie; O'Gorman, William E; Chen, Chang-ZhengRNA biology2011 Nov-Dec1115-2322142974
Exploring weak, transient protein--protein interactions in crowded in vivo environments by in-cell nuclear magnetic resonance spectroscopy.Wang, Qinghua; Zhuravleva, Anastasia; Gierasch, Lila MBiochemistry2011 Nov 19225-3621942871
Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states.Chandrasekaran, Sriram; Ament, Seth A; Eddy, James A; Rodriguez-Zas, Sandra L; Schatz, Bruce R; Price, Nathan D; Robinson, Gene EProceedings of the National Academy of Sciences of the United States of America2011 Nov 118020-521960440
Theoretical design and analysis of multivolume digital assays with wide dynamic range validated experimentally with microfluidic digital PCR.Kreutz, Jason E; Munson, Todd; Huynh, Toan; Shen, Feng; Du, Wenbin; Ismagilov, Rustem FAnalytical chemistry2011 Nov 18158-6821981344
In situ genetic correction of the sickle cell anemia mutation in human induced pluripotent stem cells using engineered zinc finger nucleases.Sebastiano, Vittorio; Maeder, Morgan L; Angstman, James F; Haddad, Bahareh; Khayter, Cyd; Yeo, Dana T; Goodwin, Mathew J; Hawkins, John S; Ramirez, Cherie L; Batista, Luis F Z; Artandi, Steven E; Wernig, Marius; Joung, J KeithStem cells (Dayton, Ohio)2011 Nov1717-2621898685
Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization.Tsankov, Alex; Yanagisawa, Yoshimi; Rhind, Nicholas; Regev, Aviv; Rando, Oliver JGenome research2011 Nov1851-6221914852
Macrophage-mediated inflammation in metabolic disease.Chawla, Ajay; Nguyen, Khoa D; Goh, Y P SharonNature reviews. Immunology2011 Nov738-4921984069
Characterization of genetic variation and natural selection at the arylamine N-acetyltransferase genes in global human populations.Mortensen, Holly M; Froment, Alain; Lema, Godfrey; Bodo, Jean-Marie; Ibrahim, Muntaser; Nyambo, Thomas B; Omar, Sabah A; Tishkoff, Sarah APharmacogenomics2011 Nov1545-5821995608
Gold nanocages: from synthesis to theranostic applications.Xia, Younan; Li, Weiyang; Cobley, Claire M; Chen, Jingyi; Xia, Xiaohu; Zhang, Qiang; Yang, Miaoxin; Cho, Eun Chul; Brown, Paige KAccounts of chemical research2011 Oct 18914-2421528889
Benign rolandic epileptiform discharges are associated with mood and behavior problems.Sarco, Dean P; Boyer, Katrina; Lundy-Krigbaum, Shannon M; Takeoka, Masanori; Jensen, Frances; Gregas, Matt; Waber, Deborah PEpilepsy & behavior : E&B2011 Oct298-30321862414
Molecular cloaking of H2A.Z on mortal DNA chromosomes during nonrandom segregation.Huh, Yang Hoon; Sherley, James LStem cells (Dayton, Ohio)2011 Oct1620-721905168
Methylphenidate actively induces emergence from general anesthesia.Solt, Ken; Cotten, Joseph F; Cimenser, Aylin; Wong, Kin F K; Chemali, Jessica J; Brown, Emery NAnesthesiology2011 Oct791-80321934407
Heterogeneous bacterial persisters and engineering approaches to eliminate them.Allison, Kyle R; Brynildsen, Mark P; Collins, James JCurrent opinion in microbiology2011 Oct593-821937262
Engineering designer nucleases with customized cleavage specificities.Sander, Jeffry D; Maeder, Morgan L; Joung, J KeithCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]2011 OctUnit12.1321987054
Fitness landscape of antibiotic tolerance in Pseudomonas aeruginosa biofilms.Amini, Sasan; Hottes, Alison K; Smith, Lincoln E; Tavazoie, SaeedPLoS pathogens2011 Octe100229822028649
Interstitial contacts in an RNA-dependent RNA polymerase lattice.Tellez, Andres B; Wang, Jing; Tanner, Elizabeth J; Spagnolo, Jeannie F; Kirkegaard, Karla; Bullitt, EstherJournal of molecular biology2011 Sep 30737-5021839092
A simple and efficient route to the FKBP-binding domain from rapamycin.Li, Wei; Bhat, Shridhar; Liu, Jun OTetrahedron letters2011 Sep 285070-507221894238
Microbiology. Antibiotic resistance, not shaken or stirred.Frisch, Ryan L; Rosenberg, Susan MScience (New York, N.Y.)2011 Sep 231713-421940884
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.Cabili, Moran N; Trapnell, Cole; Goff, Loyal; Koziol, Magdalena; Tazon-Vega, Barbara; Regev, Aviv; Rinn, John LGenes & development2011 Sep 151915-2721890647
Galphas-biased beta2-adrenergic receptor signaling from restoring synchronous contraction in the failing heart.Chakir, Khalid; Depry, Charlene; Dimaano, Veronica L; Zhu, Wei-Zhong; Vanderheyden, Marc; Bartunek, Jozef; Abraham, Theodore P; Tomaselli, Gordon F; Liu, Shu-bai; Xiang, Yang K; Zhang, Manling; Takimoto, Eiki; Dulin, Nickolai; Xiao, Rui Ping; Zhang, Jin; Science translational medicine2011 Sep 14100ra8821918105
Functional characterization of bacterial sRNAs using a network biology approach.Modi, Sheetal R; Camacho, Diogo M; Kohanski, Michael A; Walker, Graham C; Collins, James JProceedings of the National Academy of Sciences of the United States of America2011 Sep 1315522-721876160
The toxin and antidote puzzle: new ways to control insect pest populations through manipulating inheritance.Marshall, John MBioengineered bugs2011 Sep-Oct235-4021876382
Gold nanocages as contrast agents for photoacoustic imaging.Li, Weiyang; Brown, Paige K; Wang, Lihong V; Xia, YounanContrast media & molecular imaging2011 Sep-Oct370-722025337
Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection.Pattanayak, Vikram; Ramirez, Cherie L; Joung, J Keith; Liu, David RNature methods2011 Sep765-7021822273
MicroRNAs can generate thresholds in target gene expression.Mukherji, Shankar; Ebert, Margaret S; Zheng, Grace X Y; Tsang, John S; Sharp, Phillip A; van Oudenaarden, AlexanderNature genetics2011 Sep854-921857679
Peroxisome proliferation-associated control of reactive oxygen species sets melanocortin tone and feeding in diet-induced obesity.Diano, Sabrina; Liu, Zhong-Wu; Jeong, Jin Kwon; Dietrich, Marcelo O; Ruan, Hai-Bin; Kim, Esther; Suyama, Shigetomo; Kelly, Kaitlin; Gyengesi, Erika; Arbiser, Jack L; Belsham, Denise D; Sarruf, David A; Schwartz, Michael W; Bennett, Anton M; Shanabrough, MNature medicine2011 Sep1121-721873987
A Three-Channel Spectrometer for Wide-Field Imaging of Anisotropic Plasmonic Nanoparticles.Sweeney, Christina M; Nehl, Colleen L; Hasan, Warefta; Liang, Taiyang; Eckermann, Amanda; Meade, Thomas J; Odom, Teri WThe journal of physical chemistry. C, Nanomaterials and interfaces2011 Aug 1815933-1593721927639
In situ structural characterization of a recombinant protein in native Escherichia coli membranes with solid-state magic-angle-spinning NMR.Fu, Riqiang; Wang, Xingsheng; Li, Conggang; Santiago-Miranda, Adriana N; Pielak, Gary J; Tian, FangJournal of the American Chemical Society2011 Aug 1712370-321774553
Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli.Shee, Chandan; Gibson, Janet L; Darrow, Michele C; Gonzalez, Caleb; Rosenberg, Susan MProceedings of the National Academy of Sciences of the United States of America2011 Aug 1613659-6421808005
Comparison and calibration of different reporters for quantitative analysis of gene expression.Garcia, Hernan G; Lee, Heun Jin; Boedicker, James Q; Phillips, RobBiophysical journal2011 Aug 3535-4421806921
Symmetries in stimulus statistics shape the form of visual motion estimators.Fitzgerald, James E; Katsov, Alexander Y; Clandinin, Thomas R; Schnitzer, Mark JProceedings of the National Academy of Sciences of the United States of America2011 Aug 212909-1421768376
Noninvasive photoacoustic microscopy of living cells in two and three dimensions through enhancement by a metabolite dye.Zhang, Yu; Cai, Xin; Wang, Yu; Zhang, Chi; Li, Li; Choi, Sung-Wook; Wang, Lihong V; Xia, YounanAngewandte Chemie (International ed. in English)2011 Aug 17359-6321681876
Nanoparticle SERS substrates with 3D Raman-active volumes.Stoerzinger, Kelsey A; Lin, Julia Y; Odom, Teri WChemical science (Royal Society of Chemistry : 2010)2011 Aug 11435-143923997929
Zinc-finger nucleases for somatic gene therapy: the next frontier.Rahman, Shamim H; Maeder, Morgan L; Joung, J Keith; Cathomen, ToniHuman gene therapy2011 Aug925-3321631241
Integration of cell-free protein coexpression with an enzyme-linked immunosorbent assay enables rapid analysis of protein-protein interactions directly from DNA.Layton, Curtis J; Hellinga, Homme WProtein science : a publication of the Protein Society2011 Aug1432-821674663
Long-term stability of neural prosthetic control signals from silicon cortical arrays in rhesus macaque motor cortex.Chestek, Cynthia A; Gilja, Vikash; Nuyujukian, Paul; Foster, Justin D; Fan, Joline M; Kaufman, Matthew T; Churchland, Mark M; Rivera-Alvidrez, Zuley; Cunningham, John P; Ryu, Stephen I; Shenoy, Krishna VJournal of neural engineering2011 Aug04500521775782
Targeted gene disruption in somatic zebrafish cells using engineered TALENs.Sander, Jeffry D; Cade, Lindsay; Khayter, Cyd; Reyon, Deepak; Peterson, Randall T; Joung, J Keith; Yeh, Jing-Ruey JNature biotechnology2011 Aug697-821822241
Microbial genomics and infectious diseases.Relman, David AThe New England journal of medicine2011 Jul 28347-5721793746
Central dogma at the single-molecule level in living cells.Li, Gene-Wei; Xie, X SunneyNature2011 Jul 21308-1521776076
Quantitative dissection of the simple repression input-output function.Garcia, Hernan G; Phillips, RobProceedings of the National Academy of Sciences of the United States of America2011 Jul 1912173-821730194
More effective nanomedicines through particle design.Wang, Jin; Byrne, James D; Napier, Mary E; DeSimone, Joseph MSmall (Weinheim an der Bergstrasse, Germany)2011 Jul 181919-3121695781
Restriction of transient receptor potential vanilloid-1 to the peptidergic subset of primary afferent neurons follows its developmental downregulation in nonpeptidergic neurons.Cavanaugh, Daniel J; Chesler, Alexander T; Braz, Joao M; Shah, Nirao M; Julius, David; Basbaum, Allan IThe Journal of neuroscience : the official journal of the Society for Neuroscience2011 Jul 1310119-2721752988
Building enhancers from the ground up: a synthetic biology approach.Amit, Roee; Garcia, Hernan G; Phillips, Rob; Fraser, Scott ECell2011 Jul 8105-1821729783
Physical Module Networks: an integrative approach for reconstructing transcription regulation.Novershtern, Noa; Regev, Aviv; Friedman, NirBioinformatics (Oxford, England)2011 Jul 1i177-8521685068
Probing individual environmental bacteria for viruses by using microfluidic digital PCR.Tadmor, Arbel D; Ottesen, Elizabeth A; Leadbetter, Jared R; Phillips, RobScience (New York, N.Y.)2011 Jul 158-6221719670
Challenges and opportunities for next-generation intracortically based neural prostheses.Gilja, Vikash; Chestek, Cindy A; Diester, Ilka; Henderson, Jaimie M; Deisseroth, Karl; Shenoy, Krishna VIEEE transactions on bio-medical engineering2011 Jul1891-921257365
Assessment of cardio-respiratory interactions in preterm infants by bivariate autoregressive modeling and surrogate data analysis.Indic, Premananda; Bloch-Salisbury, Elisabeth; Bednarek, Frank; Brown, Emery N; Paydarfar, David; Barbieri, RiccardoEarly human development2011 Jul477-8721511413
Full-length transcriptome assembly from RNA-Seq data without a reference genome.Grabherr, Manfred G; Haas, Brian J; Yassour, Moran; Levin, Joshua Z; Thompson, Dawn A; Amit, Ido; Adiconis, Xian; Fan, Lin; Raychowdhury, Raktima; Zeng, Qiandong; Chen, Zehua; Mauceli, Evan; Hacohen, Nir; Gnirke, Andreas; Rhind, Nicholas; di Palma, FederiNature biotechnology2011 Jul644-5221572440
High-fat feeding promotes obesity via insulin receptor/PI3K-dependent inhibition of SF-1 VMH neurons.Klockener, Tim; Hess, Simon; Belgardt, Bengt F; Paeger, Lars; Verhagen, Linda A W; Husch, Andreas; Sohn, Jong-Woo; Hampel, Brigitte; Dhillon, Harveen; Zigman, Jeffrey M; Lowell, Bradford B; Williams, Kevin W; Elmquist, Joel K; Horvath, Tamas L; KloppenburNature neuroscience2011 Jul911-821642975
Neuroblast migration along the anteroposterior axis of C. elegans is controlled by opposing gradients of Wnts and a secreted Frizzled-related protein.Harterink, Martin; Kim, Dong Hyun; Middelkoop, Teije C; Doan, Thang Dinh; van Oudenaarden, Alexander; Korswagen, Hendrik CDevelopment (Cambridge, England)2011 Jul2915-2421653614
What You Feel Influences What You See: The Role of Affective Feelings in Resolving Binocular Rivalry.Anderson, Eric; Siegel, Erika H; Barrett, Lisa FeldmanJournal of experimental social psychology2011 Jul856-86021789027
The effect of mutations on the alloreactive T cell receptor/peptide-MHC interface structure: a molecular dynamics study.Wolfson, Mikhail Y; Nam, Kwangho; Chakraborty, Arup KThe journal of physical chemistry. B2011 Jun 308317-2721651302
Defining the computational structure of the motion detector in Drosophila.Clark, Damon A; Bursztyn, Limor; Horowitz, Mark A; Schnitzer, Mark J; Clandinin, Thomas RNeuron2011 Jun 231165-7721689602
The visual impact of gossip.Anderson, Eric; Siegel, Erika H; Bliss-Moreau, Eliza; Barrett, Lisa FeldmanScience (New York, N.Y.)2011 Jun 171446-821596956
A hierarchical Bayesian approach for learning sparse spatio-temporal decompositions of multichannel EEG.Wu, Wei; Chen, Zhe; Gao, Shangkai; Brown, Emery NNeuroImage2011 Jun 151929-4521420499
Involvement of adenosine A2A receptors in engulfment-dependent apoptotic cell suppression of inflammation.Koroskenyi, Krisztina; Duro, Edina; Pallai, Anna; Sarang, Zsolt; Kloor, Doris; Ucker, David S; Beceiro, Susana; Castrillo, Antonio; Chawla, Ajay; Ledent, Catherine A; Fesus, Laszlo; Szondy, ZsuzsaJournal of immunology (Baltimore, Md. : 1950)2011 Jun 157144-5521593381
Breaking free of sample size dogma to perform innovative translational research.Bacchetti, Peter; Deeks, Steven G; McCune, Joseph MScience translational medicine2011 Jun 1587ps2421677197
Nicotine decreases food intake through activation of POMC neurons.Mineur, Yann S; Abizaid, Alfonso; Rao, Yan; Salas, Ramiro; DiLeone, Ralph J; Gundisch, Daniela; Diano, Sabrina; De Biasi, Mariella; Horvath, Tamas L; Gao, Xiao-Bing; Picciotto, Marina RScience (New York, N.Y.)2011 Jun 101330-221659607
The human brain in a dish: the promise of iPSC-derived neurons.Dolmetsch, Ricardo; Geschwind, Daniel HCell2011 Jun 10831-421663789
Effects of natural selection and gene conversion on the evolution of human glycophorins coding for MNS blood polymorphisms in malaria-endemic African populations.Ko, Wen-Ya; Kaercher, Kristin A; Giombini, Emanuela; Marcatili, Paolo; Froment, Alain; Ibrahim, Muntaser; Lema, Godfrey; Nyambo, Thomas B; Omar, Sabah A; Wambebe, Charles; Ranciaro, Alessia; Hirbo, Jibril B; Tishkoff, Sarah AAmerican journal of human genetics2011 Jun 10741-5421664997
Controlling the synthesis and assembly of silver nanostructures for plasmonic applications.Rycenga, Matthew; Cobley, Claire M; Zeng, Jie; Li, Weiyang; Moran, Christine H; Zhang, Qiang; Qin, Dong; Xia, YounanChemical reviews2011 Jun 83669-71221395318
Reconstitution of contractile actomyosin bundles.Thoresen, Todd; Lenz, Martin; Gardel, Margaret LBiophysical journal2011 Jun 82698-70521641315
Generation of hot spots with silver nanocubes for single-molecule detection by surface-enhanced Raman scattering.Rycenga, Matthew; Xia, Xiaohu; Moran, Christine H; Zhou, Fei; Qin, Dong; Li, Zhi-Yuan; Xia, YounanAngewandte Chemie (International ed. in English)2011 Jun 65473-721542081
Interactions between Cdx genes and retinoic acid modulate early cardiogenesis.Lengerke, Claudia; Wingert, Rebecca; Beeretz, Michael; Grauer, Matthias; Schmidt, Anne G; Konantz, Martina; Daley, George Q; Davidson, Alan JDevelopmental biology2011 Jun 1134-4221466798
Macromolecular crowding fails to fold a globular protein in cells.Schlesinger, Alexander P; Wang, Yaqiang; Tadeo, Xavier; Millet, Oscar; Pielak, Gary JJournal of the American Chemical Society2011 Jun 18082-521534566
Risk as Social Context: Immigration Policy and Autism in California.Fountain, Christine; Bearman, PeterSociological forum (Randolph, N.J.)2011 Jun 1215-24021643443
STATE-SPACE SOLUTIONS TO THE DYNAMIC MAGNETOENCEPHALOGRAPHY INVERSE PROBLEM USING HIGH PERFORMANCE COMPUTING.Long, Christopher J; Purdon, Patrick L; Temereanca, Simona; Desai, Neil U; Hamalainen, Matti S; Brown, Emery NThe annals of applied statistics2011 Jun 11207-122822081780
Age of diagnosis for autism: individual and community factors across 10 birth cohorts.Fountain, Christine; King, Marissa D; Bearman, Peter SJournal of epidemiology and community health2011 Jun503-1020974836
A point process model for auditory neurons considering both their intrinsic dynamics and the spectrotemporal properties of an extrinsic signal.Plourde, Eric; Delgutte, Bertrand; Brown, Emery NIEEE transactions on bio-medical engineering2011 Jun1507-1021317068
Neuropeptide Y-like signalling and nutritionally mediated gene expression and behaviour in the honey bee.Ament, S A; Velarde, R A; Kolodkin, M H; Moyse, D; Robinson, G EInsect molecular biology2011 Jun335-4521349120
Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases.Curtin, Shaun J; Zhang, Feng; Sander, Jeffry D; Haun, William J; Starker, Colby; Baltes, Nicholas J; Reyon, Deepak; Dahlborg, Elizabeth J; Goodwin, Mathew J; Coffman, Andrew P; Dobbs, Drena; Joung, J Keith; Voytas, Daniel F; Stupar, Robert MPlant physiology2011 Jun466-7321464476
Photon counting, censor corrections, and lifetime imaging for improved detection in two-photon microscopy.Driscoll, Jonathan D; Shih, Andy Y; Iyengar, Satish; Field, Jeffrey J; White, G Allen; Squier, Jeffrey A; Cauwenberghs, Gert; Kleinfeld, DavidJournal of neurophysiology2011 Jun3106-1321471395
The effect of sedimentation and diffusion on cellular uptake of gold nanoparticles.Cho, Eun Chul; Zhang, Qiang; Xia, YounanNature nanotechnology2011 Jun385-9121516092
Elastic energy of polyhedral bilayer vesicles.Haselwandter, Christoph A; Phillips, RobPhysical review. E, Statistical, nonlinear, and soft matter physics2011 Jun06190121797397
Prolonged oxaliplatin exposure alters intracellular calcium signaling: a new mechanism to explain oxaliplatin-associated peripheral neuropathy.Schulze, Christin; McGowan, Margit; Jordt, Sven-Eric; Ehrlich, Barbara EClinical colorectal cancer2011 Jun126-3321859566
Measurement of absolute T cell receptor rearrangement diversity.Baum, Paul D; Young, Jennifer J; McCune, Joseph MJournal of immunological methods2011 May 3145-5321385585
Tracking brain states under general anesthesia by using global coherence analysis.Cimenser, Aylin; Purdon, Patrick L; Pierce, Eric T; Walsh, John L; Salazar-Gomez, Andres F; Harrell, Priscilla G; Tavares-Stoeckel, Casie; Habeeb, Kathleen; Brown, Emery NProceedings of the National Academy of Sciences of the United States of America2011 May 248832-721555565
Comparative functional genomics of the fission yeasts.Rhind, Nicholas; Chen, Zehua; Yassour, Moran; Thompson, Dawn A; Haas, Brian J; Habib, Naomi; Wapinski, Ilan; Roy, Sushmita; Lin, Michael F; Heiman, David I; Young, Sarah K; Furuya, Kanji; Guo, Yabin; Pidoux, Alison; Chen, Huei Mei; Robbertse, Barbara; GolScience (New York, N.Y.)2011 May 20930-621511999
Fluctuating and sensory-induced vasodynamics in rodent cortex extend arteriole capacity.Drew, Patrick J; Shih, Andy Y; Kleinfeld, DavidProceedings of the National Academy of Sciences of the United States of America2011 May 178473-821536897
Numb links extracellular cues to intracellular polarity machinery to promote chemotaxis.Zhou, Pengcheng; Alfaro, Jose; Chang, Eun Hyuk; Zhao, Xuesong; Porcionatto, Marimelia; Segal, Rosalind ADevelopmental cell2011 May 17610-2221571219
Metabolite-enabled eradication of bacterial persisters by aminoglycosides.Allison, Kyle R; Brynildsen, Mark P; Collins, James JNature2011 May 12216-2021562562
Genetically encodable fluorescent biosensors for tracking signaling dynamics in living cells.Newman, Robert H; Fosbrink, Matthew D; Zhang, JinChemical reviews2011 May 113614-6621456512
Inverse Medea as a novel gene drive system for local population replacement: a theoretical analysis.Marshall, John M; Hay, Bruce AThe Journal of heredity2011 May-Jun336-4121493596
Digital isothermal quantification of nucleic acids via simultaneous chemical initiation of recombinase polymerase amplification reactions on SlipChip.Shen, Feng; Davydova, Elena K; Du, Wenbin; Kreutz, Jason E; Piepenburg, Olaf; Ismagilov, Rustem FAnalytical chemistry2011 May 13533-4021476587
Differential hemodynamic response in affective circuitry with aging: an FMRI study of novelty, valence, and arousal.Moriguchi, Yoshiya; Negreira, Alyson; Weierich, Mariann; Dautoff, Rebecca; Dickerson, Bradford C; Wright, Christopher I; Barrett, Lisa FeldmanJournal of cognitive neuroscience2011 May1027-4120521849
Emotional granularity and borderline personality disorder.Suvak, Michael K; Litz, Brett T; Sloan, Denise M; Zanarini, Mary C; Barrett, Lisa Feldman; Hofmann, Stefan GJournal of abnormal psychology2011 May414-2621171723
Space coding by gamma oscillations in the barn owl optic tectum.Sridharan, Devarajan; Boahen, Kwabena; Knudsen, Eric IJournal of neurophysiology2011 May2005-1721325681
Single-neuron dynamics in human focal epilepsy.Truccolo, Wilson; Donoghue, Jacob A; Hochberg, Leigh R; Eskandar, Emad N; Madsen, Joseph R; Anderson, William S; Brown, Emery N; Halgren, Eric; Cash, Sydney SNature neuroscience2011 May635-4121441925
PAPI, a novel TUDOR-domain protein, complexes with AGO3, ME31B and TRAL in the nuage to silence transposition.Liu, Li; Qi, Hongying; Wang, Jianquan; Lin, HaifanDevelopment (Cambridge, England)2011 May1863-7321447556
MicroRNA programs in normal and aberrant stem and progenitor cells.Arnold, Christopher P; Tan, Ruoying; Zhou, Baiyu; Yue, Si-Biao; Schaffert, Steven; Biggs, Joseph R; Doyonnas, Regis; Lo, Miao-Chia; Perry, John M; Renault, Valerie M; Sacco, Alessandra; Somervaille, Tim; Viatour, Patrick; Brunet, Anne; Cleary, Michael L; Genome research2011 May798-81021451113
Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer.Steine, Eveline J; Ehrich, Mathias; Bell, George W; Raj, Arjun; Reddy, Seshamma; van Oudenaarden, Alexander; Jaenisch, Rudolf; Linhart, Heinz GThe Journal of clinical investigation2011 May1748-5221490393
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.Rabani, Michal; Levin, Joshua Z; Fan, Lin; Adiconis, Xian; Raychowdhury, Raktima; Garber, Manuel; Gnirke, Andreas; Nusbaum, Chad; Hacohen, Nir; Friedman, Nir; Amit, Ido; Regev, AvivNature biotechnology2011 May436-4221516085
Insulin-like growth factor 1-mediated hyperthermia involves anterior hypothalamic insulin receptors.Sanchez-Alavez, Manuel; Osborn, Olivia; Tabarean, Iustin V; Holmberg, Kristina H; Eberwine, James; Kahn, C Ronald; Bartfai, TamasThe Journal of biological chemistry2011 Apr 2914983-9021330367
Luminescent kinase activity biosensors based on a versatile bimolecular switch.Herbst, Katie J; Allen, Michael D; Zhang, JinJournal of the American Chemical Society2011 Apr 205676-921438554
Dynamic and structural signatures of lamellar actomyosin force generation.Aratyn-Schaus, Yvonne; Oakes, Patrick W; Gardel, Margaret LMolecular biology of the cell2011 Apr 151330-921307339
Surface adsorbate fluctuations and noise in nanoelectromechanical systems.Yang, Y T; Callegari, C; Feng, X L; Roukes, M LNano letters2011 Apr 131753-921388120
Hepatic gene expression profiling of 5'-AMP-induced hypometabolism in mice.Zhao, Zhaoyang; Miki, Takao; Van Oort-Jansen, Anita; Matsumoto, Tomoko; Loose, David S; Lee, Cheng ChiPhysiological genomics2011 Apr 12325-4521224422
Eosinophils sustain adipose alternatively activated macrophages associated with glucose homeostasis.Wu, Davina; Molofsky, Ari B; Liang, Hong-Erh; Ricardo-Gonzalez, Roberto R; Jouihan, Hani A; Bando, Jennifer K; Chawla, Ajay; Locksley, Richard MScience (New York, N.Y.)2011 Apr 8243-721436399
A new theranostic system based on gold nanocages and phase-change materials with unique features for photoacoustic imaging and controlled release.Moon, Geon Dae; Choi, Sung-Wook; Cai, Xin; Li, Weiyang; Cho, Eun Chul; Jeong, Unyong; Wang, Lihong V; Xia, YounanJournal of the American Chemical Society2011 Apr 64762-521401092
Design, construction, and validation of a modular library of sequence diversity standards for polymerase chain reaction.Baum, Paul D; Young, Jennifer J; Zhang, Qianjun; Kasakow, Zeljka; McCune, Joseph MAnalytical biochemistry2011 Apr 1106-1521111699
Drug tolerance in replicating mycobacteria mediated by a macrophage-induced efflux mechanism.Adams, Kristin N; Takaki, Kevin; Connolly, Lynn E; Wiedenhoft, Heather; Winglee, Kathryn; Humbert, Olivier; Edelstein, Paul H; Cosma, Christine L; Ramakrishnan, LalitaCell2011 Apr 139-5321376383
A randomized, controlled trial of raltegravir intensification in antiretroviral-treated, HIV-infected patients with a suboptimal CD4+ T cell response.Hatano, Hiroyu; Hayes, Timothy L; Dahl, Viktor; Sinclair, Elizabeth; Lee, Tzong-Hae; Hoh, Rebecca; Lampiris, Harry; Hunt, Peter W; Palmer, Sarah; McCune, Joseph M; Martin, Jeffrey N; Busch, Michael P; Shacklett, Barbara L; Deeks, Steven GThe Journal of infectious diseases2011 Apr 1960-821402547
Socioeconomic Status and the Increased Prevalence of Autism in California.King, Marissa D; Bearman, Peter SAmerican sociological review2011 Apr 1320-34621547238
Older and wiser? An affective science perspective on age-related challenges in financial decision making.Weierich, Mariann R; Kensinger, Elizabeth A; Munnell, Alicia H; Sass, Steven A; Dickerson, Brad C; Wright, Christopher I; Barrett, Lisa FeldmanSocial cognitive and affective neuroscience2011 Apr195-20620587596
Statistical inference for assessing functional connectivity of neuronal ensembles with sparse spiking data.Chen, Zhe; Putrino, David F; Ghosh, Soumya; Barbieri, Riccardo; Brown, Emery NIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society2011 Apr121-3520937583
A closed-loop human simulator for investigating the role of feedback control in brain-machine interfaces.Cunningham, John P; Nuyujukian, Paul; Gilja, Vikash; Chestek, Cindy A; Ryu, Stephen I; Shenoy, Krishna VJournal of neurophysiology2011 Apr1932-4920943945
Medea selfish genetic elements as tools for altering traits of wild populations: a theoretical analysis.Ward, Catherine M; Su, Jessica T; Huang, Yunxin; Lloyd, Alun L; Gould, Fred; Hay, Bruce AEvolution; international journal of organic evolution2011 Apr1149-6221062278
Grounding emotion in situated conceptualization.Wilson-Mendenhall, Christine D; Barrett, Lisa Feldman; Simmons, W Kyle; Barsalou, Lawrence WNeuropsychologia2011 Apr1105-2721192959
Gold nanocages covered with thermally-responsive polymers for controlled release by high-intensity focused ultrasound.Li, Weiyang; Cai, Xin; Kim, Chulhong; Sun, Guorong; Zhang, Yu; Deng, Rui; Yang, Miaoxin; Chen, Jingyi; Achilefu, Samuel; Wang, Lihong V; Xia, YounanNanoscale2011 Apr1724-3021321760
Development of later life spontaneous seizures in a rodent model of hypoxia-induced neonatal seizures.Rakhade, Sanjay N; Klein, Peter M; Huynh, Thanthao; Hilario-Gomez, Cristina; Kosaras, Bela; Rotenberg, Alexander; Jensen, Frances EEpilepsia2011 Apr753-6521366558
A miniaturized technique for assessing protein thermodynamics and function using fast determination of quantitative cysteine reactivity.Isom, Daniel G; Marguet, Philippe R; Oas, Terrence G; Hellinga, Homme WProteins2011 Apr1034-4721387407
Comparative advantages of mechanical biosensors.Arlett, J L; Myers, E B; Roukes, M LNature nanotechnology2011 Apr203-1521441911
Validating transcripts with probes and imaging technology.Itzkovitz, Shalev; van Oudenaarden, AlexanderNature methods2011 AprS12-921451512
Trpv1 reporter mice reveal highly restricted brain distribution and functional expression in arteriolar smooth muscle cells.Cavanaugh, Daniel J; Chesler, Alexander T; Jackson, Alexander C; Sigal, Yaron M; Yamanaka, Hiroki; Grant, Rebecca; O'Donnell, Dajan; Nicoll, Roger A; Shah, Nirao M; Julius, David; Basbaum, Allan IThe Journal of neuroscience : the official journal of the Society for Neuroscience2011 Mar 305067-7721451044
Evidence from Cameroon reveals differences in the genetic structure and histories of chimpanzee populations.Gonder, Mary Katherine; Locatelli, Sabrina; Ghobrial, Lora; Mitchell, Matthew W; Kujawski, Joseph T; Lankester, Felix J; Stewart, Caro-Beth; Tishkoff, Sarah AProceedings of the National Academy of Sciences of the United States of America2011 Mar 224766-7121368170
Cell-ECM traction force modulates endogenous tension at cell-cell contacts.Maruthamuthu, Venkat; Sabass, Benedikt; Schwarz, Ulrich S; Gardel, Margaret LProceedings of the National Academy of Sciences of the United States of America2011 Mar 224708-1321383129
Impulse control: temporal dynamics in gene transcription.Yosef, Nir; Regev, AvivCell2011 Mar 18886-9621414481
Cellular decision making and biological noise: from microbes to mammals.Balazsi, Gabor; van Oudenaarden, Alexander; Collins, James JCell2011 Mar 18910-2521414483
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.Willner, Dana; Furlan, Mike; Schmieder, Robert; Grasis, Juris A; Pride, David T; Relman, David A; Angly, Florent E; McDole, Tracey; Mariella Jr, Ray P; Rohwer, Forest; Haynes, MatthewProceedings of the National Academy of Sciences of the United States of America2011 Mar 154547-5320547834
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation.Dethlefsen, Les; Relman, David AProceedings of the National Academy of Sciences of the United States of America2011 Mar 154554-6120847294
Sustained activation of nuclear erythroid 2-related factor 2/antioxidant response element signaling promotes reductive stress in the human mutant protein aggregation cardiomyopathy in mice.Rajasekaran, Namakkal Soorappan; Varadharaj, Saradhadevi; Khanderao, Gayatri D; Davidson, Christopher J; Kannan, Sankaranarayanan; Firpo, Matthew A; Zweier, Jay L; Benjamin, Ivor JAntioxidants & redox signaling2011 Mar 15957-7121126175
Using induced pluripotent stem cells to investigate cardiac phenotypes in Timothy syndrome.Yazawa, Masayuki; Hsueh, Brian; Jia, Xiaolin; Pasca, Anca M; Bernstein, Jonathan A; Hallmayer, Joachim; Dolmetsch, Ricardo ENature2011 Mar 10230-421307850
Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons.Buckley, Peter T; Lee, Miler T; Sul, Jai-Yoon; Miyashiro, Kevin Y; Bell, Thomas J; Fisher, Stephen A; Kim, Junhyong; Eberwine, JamesNeuron2011 Mar 10877-8421382548
Dodging drug-resistant cancer with diamonds.Merkel, Timothy J; DeSimone, Joseph MScience translational medicine2011 Mar 973ps821389261
Caenorhabditis elegans aristaless/Arx gene alr-1 restricts variable gene expression.Topalidou, Irini; van Oudenaarden, Alexander; Chalfie, MartinProceedings of the National Academy of Sciences of the United States of America2011 Mar 84063-821368126
In vivo imaging of myelin in the vertebrate central nervous system using third harmonic generation microscopy.Farrar, Matthew J; Wise, Frank W; Fetcho, Joseph R; Schaffer, Chris BBiophysical journal2011 Mar 21362-7121354410
HIV-specific CD4+ T cells may contribute to viral persistence in HIV controllers.Hunt, Peter W; Hatano, Hiroyu; Sinclair, Elizabeth; Lee, Tzong-Hae; Busch, Michael P; Martin, Jeffrey N; McCune, Joseph M; Deeks, Steven GClinical infectious diseases : an official publication of the Infectious Diseases Society of America2011 Mar 1681-721245154
An enzyme-sensitive probe for photoacoustic imaging and fluorescence detection of protease activity.Xia, Xiaohu; Yang, Miaoxin; Oetjen, L Kyle; Zhang, Yu; Li, Qingge; Chen, Jingyi; Xia, YounanNanoscale2011 Mar950-321225037
An optogenetic toolbox designed for primates.Diester, Ilka; Kaufman, Matthew T; Mogri, Murtaza; Pashaie, Ramin; Goo, Werapong; Yizhar, Ofer; Ramakrishnan, Charu; Deisseroth, Karl; Shenoy, Krishna VNature neuroscience2011 Mar387-9721278729
High-throughput single-molecule optofluidic analysis.Kim, Soohong; Streets, Aaron M; Lin, Ron R; Quake, Stephen R; Weiss, Shimon; Majumdar, Devdoot SNature methods2011 Mar242-521297618
Effect of promoter architecture on the cell-to-cell variability in gene expression.Sanchez, Alvaro; Garcia, Hernan G; Jones, Daniel; Phillips, Rob; Kondev, JanePLoS computational biology2011 Mare100110021390269
Human leg model predicts ankle muscle-tendon morphology, state, roles and energetics in walking.Krishnaswamy, Pavitra; Brown, Emery N; Herr, Hugh MPLoS computational biology2011 Mare100110721445231
A Granger causality measure for point process models of ensemble neural spiking activity.Kim, Sanggyun; Putrino, David; Ghosh, Soumya; Brown, Emery NPLoS computational biology2011 Mare100111021455283
A versatile in vivo system for directed dissection of gene expression patterns.Gohl, Daryl M; Silies, Marion A; Gao, Xiaojing J; Bhalerao, Sheetal; Luongo, Francisco J; Lin, Chun-Chieh; Potter, Christopher J; Clandinin, Thomas RNature methods2011 Mar231-721473015
Direct activation of Epac by sulfonylurea is isoform selective.Herbst, Katie J; Coltharp, Carla; Amzel, L Mario; Zhang, JinChemistry & biology2011 Feb 25243-5121338921
Excitatory projection neuron subtypes control the distribution of local inhibitory interneurons in the cerebral cortex.Lodato, Simona; Rouaux, Caroline; Quast, Kathleen B; Jantrachotechatchawan, Chanati; Studer, Michele; Hensch, Takao K; Arlotta, PaolaNeuron2011 Feb 24763-7921338885
Development of proneurogenic, neuroprotective small molecules.MacMillan, Karen S; Naidoo, Jacinth; Liang, Jue; Melito, Lisa; Williams, Noelle S; Morlock, Lorraine; Huntington, Paula J; Estill, Sandi Jo; Longgood, Jamie; Becker, Ginger L; McKnight, Steven L; Pieper, Andrew A; De Brabander, Jef K; Ready, Joseph MJournal of the American Chemical Society2011 Feb 91428-3721210688
Nanofiber membranes with controllable microwells and structural cues and their use in forming cell microarrays and neuronal networks.Xie, Jingwei; Liu, Wenying; MacEwan, Matthew R; Yeh, Yi-Chun; Thomopoulos, Stavros; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2011 Feb 7293-721294253
The Yb body, a major site for Piwi-associated RNA biogenesis and a gateway for Piwi expression and transport to the nucleus in somatic cells.Qi, Hongying; Watanabe, Toshiaki; Ku, Hsueh-Yen; Liu, Na; Zhong, Mei; Lin, HaifanThe Journal of biological chemistry2011 Feb 43789-9721106531
Morphological phase diagram for lipid membrane domains with entropic tension.Rim, J E; Ursell, T S; Phillips, R; Klug, W SPhysical review letters2011 Feb 405780121405437
Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(ii).Kim, Hyun Jung; Du, Wenbin; Ismagilov, Rustem FIntegrative biology : quantitative biosciences from nano to macro2011 Feb126-3320717565
Control of masculinization of the brain and behavior.Wu, Melody V; Shah, Nirao MCurrent opinion in neurobiology2011 Feb116-2320970320
Movement, technology and discovery in the zebrafish.McLean, David L; Fetcho, Joseph RCurrent opinion in neurobiology2011 Feb110-520970321
Efficient decoding with steady-state Kalman filter in neural interface systems.Malik, Wasim Q; Truccolo, Wilson; Brown, Emery N; Hochberg, Leigh RIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society2011 Feb25-3421078582
Semele: a killer-male, rescue-female system for suppression and replacement of insect disease vector populations.Marshall, John M; Pittman, Geoffrey W; Buchman, Anna B; Hay, Bruce AGenetics2011 Feb535-5121078687
Protein folding in the cell: challenges and progress.Gershenson, Anne; Gierasch, Lila MCurrent opinion in structural biology2011 Feb32-4121112769
In-cell protein NMR and protein leakage.Barnes, Christopher O; Pielak, Gary JProteins2011 Feb347-5121120863
Amygdala volume and social network size in humans.Bickart, Kevin C; Wright, Christopher I; Dautoff, Rebecca J; Dickerson, Bradford C; Barrett, Lisa FeldmanNature neuroscience2011 Feb163-421186358
Closely spaced pregnancies are associated with increased odds of autism in California sibling births.Cheslack-Postava, Keely; Liu, Kayuet; Bearman, Peter SPediatrics2011 Feb246-5321220394
Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans.Leifer, Andrew M; Fang-Yen, Christopher; Gershow, Marc; Alkema, Mark J; Samuel, Aravinthan D TNature methods2011 Feb147-5221240279
Dynamic local unfolding in the serpin ýý-1 antitrypsin provides a mechanism for loop insertion and polymerization.Krishnan, Beena; Gierasch, Lila MNature structural & molecular biology2011 Feb222-621258324
Considering PTSD from the perspective of brain processes: a psychological construction approach.Suvak, Michael K; Barrett, Lisa FeldmanJournal of traumatic stress2011 Feb3-2421298725
Densely interconnected transcriptional circuits control cell states in human hematopoiesis.Novershtern, Noa; Subramanian, Aravind; Lawton, Lee N; Mak, Raymond H; Haining, W Nicholas; McConkey, Marie E; Habib, Naomi; Yosef, Nir; Chang, Cindy Y; Shay, Tal; Frampton, Garrett M; Drake, Adam C B; Leskov, Ilya; Nilsson, Bjorn; Preffer, Fred; DombkowsCell2011 Jan 21296-30921241896
How one bad protein spoils the barrel: structural details of ýý2-microglobulin amyloidogenicity.Gierasch, Lila MMolecular cell2011 Jan 21129-3121255721
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.Morowitz, Michael J; Denef, Vincent J; Costello, Elizabeth K; Thomas, Brian C; Poroyko, Valeriy; Relman, David A; Banfield, Jillian FProceedings of the National Academy of Sciences of the United States of America2011 Jan 181128-3321191099
Using mechanobiological mimicry of red blood cells to extend circulation times of hydrogel microparticles.Merkel, Timothy J; Jones, Stephen W; Herlihy, Kevin P; Kersey, Farrell R; Shields, Adam R; Napier, Mary; Luft, J Christopher; Wu, Huali; Zamboni, William C; Wang, Andrew Z; Bear, James E; DeSimone, Joseph MProceedings of the National Academy of Sciences of the United States of America2011 Jan 11586-9121220299
Bacteria as control engineers.Allison, Kyle R; Collins, James JMolecular cell2011 Jan 74-521211717
Tunable signal processing in synthetic MAP kinase cascades.O'Shaughnessy, Ellen C; Palani, Santhosh; Collins, James J; Sarkar, Casim ACell2011 Jan 7119-3121215374
Identification of candidate IgG biomarkers for Alzheimer's disease via combinatorial library screening.Reddy, M Muralidhar; Wilson, Rosemary; Wilson, Johnnie; Connell, Steven; Gocke, Anne; Hynan, Linda; German, Dwight; Kodadek, ThomasCell2011 Jan 7132-4221215375
Shear thickening of F-actin networks crosslinked with non-muscle myosin IIB.Norstrom, Melanie; Gardel, Margaret LSoft matter2011 Jan 13228-323321552431
Bridging Token Identity Theory and Supervenience Theory Through Psychological Construction.Barrett, Lisa FeldmanPsychological inquiry2011 Jan 1115-12721785534
Design, synthesis, and characterization of novel nanowire structures for photovoltaics and intracellular probes.Tian, Bozhi; Lieber, Charles MPure and applied chemistry. Chimie pure et appliquee2011 Jan 12153-216922707797
Dynamic assessment of baroreflex control of heart rate during induction of propofol anesthesia using a point process method.Chen, Zhe; Purdon, Patrick L; Harrell, Grace; Pierce, Eric T; Walsh, John; Brown, Emery N; Barbieri, RiccardoAnnals of biomedical engineering2011 Jan260-7620945159
Signaling diversity of PKA achieved via a Ca2+-cAMP-PKA oscillatory circuit.Ni, Qiang; Ganesan, Ambhighainath; Aye-Han, Nwe-Nwe; Gao, Xinxin; Allen, Michael D; Levchenko, Andre; Zhang, JinNature chemical biology2011 Jan34-4021102470
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time.Pride, David T; Sun, Christine L; Salzman, Julia; Rao, Nitya; Loomer, Peter; Armitage, Gary C; Banfield, Jillian F; Relman, David AGenome research2011 Jan126-3621149389
Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).Sander, Jeffry D; Dahlborg, Elizabeth J; Goodwin, Mathew J; Cade, Lindsay; Zhang, Feng; Cifuentes, Daniel; Curtin, Shaun J; Blackburn, Jessica S; Thibodeau-Beganny, Stacey; Qi, Yiping; Pierick, Christopher J; Hoffman, Ellen; Maeder, Morgan L; Khayter, CydNature methods2011 Jan67-921151135
Epilepsy as a spectrum disorder: Implications from novel clinical and basic neuroscience.Jensen, Frances EEpilepsia2011 Jan1-621214533
Blinders, phenotype, and fashionable genetic analysis: a critical examination of the current state of epilepsy genetic studies.Greenberg, David A; Subaran, RyanEpilepsia2011 Jan1-921219301
Does acquired epileptogenesis in the immature brain require neuronal death.Baram, Tallie Z; Jensen, Frances E; Brooks-Kayal, AmyEpilepsy currents / American Epilepsy Society2011 Jan21-621461261
Emotion Generation and Emotion Regulation: One or Two Depends on Your Point of View.Gross, James J; Barrett, Lisa FeldmanEmotion review2011 Jan16-Aug21479078
Alternative macrophage activation and metabolism.Odegaard, Justin I; Chawla, AjayAnnual review of pathology2011275-9721034223
ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms.Reyon, Deepak; Kirkpatrick, Jessica R; Sander, Jeffry D; Zhang, Feng; Voytas, Daniel F; Joung, J Keith; Dobbs, Drena; Coffman, Clark RBMC genomics20118321276248
A low T regulatory cell response may contribute to both viral control and generalized immune activation in HIV controllers.Hunt, Peter W; Landay, Alan L; Sinclair, Elizabeth; Martinson, Jeffrey A; Hatano, Hiroyu; Emu, Brinda; Norris, Philip J; Busch, Michael P; Martin, Jeffrey N; Brooks, Cicely; McCune, Joseph M; Deeks, Steven GPloS one2011e1592421305005
Thermodynamics of biological processes.Garcia, Hernan G; Kondev, Jane; Orme, Nigel; Theriot, Julie A; Phillips, RobMethods in enzymology201127-5921333788
Microfluidics using spatially defined arrays of droplets in one, two, and three dimensions.Pompano, Rebecca R; Liu, Weishan; Du, Wenbin; Ismagilov, Rustem FAnnual review of analytical chemistry (Palo Alto, Calif.)201159-8121370983
Stem cells in veterinary medicine.Fortier, Lisa A; Travis, Alexander JStem cell research & therapy2011921371354
Reporting from the field: genetically encoded fluorescent reporters uncover signaling dynamics in living biological systems.Mehta, Sohum; Zhang, JinAnnual review of biochemistry2011375-40121495849
General anesthesia and altered states of arousal: a systems neuroscience analysis.Brown, Emery N; Purdon, Patrick L; Van Dort, Christa JAnnual review of neuroscience2011601-2821513454
A guide to delineate the logic of neurovascular signaling in the brain.Kleinfeld, David; Blinder, Pablo; Drew, Patrick J; Driscoll, Jonathan D; Muller, Arnaud; Tsai, Philbert S; Shih, Andy YFrontiers in neuroenergetics2011121559095
Silicon-Neuron Design: A Dynamical Systems Approach.Arthur, John V; Boahen, KwabenaIEEE transactions on circuits and systems. I, Regular papers : a publication of the IEEE Circuits and Systems Society20111034-104321617741
Denoising two-photon calcium imaging data.Malik, Wasim Q; Schummers, James; Sur, Mriganka; Brown, Emery NPloS one2011e2049021687727
Combining Computational Fluid Dynamics and Agent-Based Modeling: a new approach to evacuation planning.Epstein, Joshua M; Pankajakshan, Ramesh; Hammond, Ross APloS one2011e2013921687788
Immune activation, CD4+ T cell counts, and viremia exhibit oscillatory patterns over time in patients with highly resistant HIV infection.Kitchen, Christina M R; Yeghiazarian, Lilit; Hoh, Rebecca; McCune, Joseph M; Sinclair, Elizabeth; Martin, Jeffrey N; Deeks, Steven GPloS one2011e2119021701594
A dynamical systems view of motor preparation: implications for neural prosthetic system design.Shenoy, Krishna V; Kaufman, Matthew T; Sahani, Maneesh; Churchland, Mark MProgress in brain research201133-5821763517
Future developments in brain-machine interface research.Lebedev, Mikhail A; Tate, Andrew J; Hanson, Timothy L; Li, Zheng; O'Doherty, Joseph E; Winans, Jesse A; Ifft, Peter J; Zhuang, Katie Z; Fitzsimmons, Nathan A; Schwarz, David A; Fuller, Andrew M; An, Je Hi; Nicolelis, Miguel A LClinics (Sao Paulo, Brazil)201125-3221779720
Induction of stable drug resistance in human breast cancer cells using a combinatorial zinc finger transcription factor library.Lee, Jeongeun; Hirsh, Andrew S; Wittner, Ben S; Maeder, Morgan L; Singavarapu, Rajasekhar; Lang, Magdalena; Janarthanan, Sailajah; McDermott, Ultan; Yajnik, Vijay; Ramaswamy, Sridhar; Joung, J Keith; Sgroi, Dennis CPloS one2011e2111221818254
A resource for discovering specific and universal biomarkers for distributed stem cells.Noh, Minsoo; Smith, Janet L; Huh, Yang Hoon; Sherley, James LPloS one2011e2207721818293
Toward a whole-body neuroprosthetic.Lebedev, Mikhail A; Nicolelis, Miguel A LProgress in brain research201147-6021867793
LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates.Moughon, Stewart E; Samudrala, RamBMC bioinformatics201136821920038
Engineering zinc finger nucleases for targeted mutagenesis of zebrafish.Sander, Jeffry D; Yeh, J-R Joanna; Peterson, Randall T; Joung, J KeithMethods in cell biology201151-821924156
Stress-induced loss of heterozygosity in Candida: a possible missing link in the ability to evolve.Rosenberg, Susan MmBio201121933916
Uniting germline and stem cells: the function of Piwi proteins and the piRNA pathway in diverse organisms.Juliano, Celina; Wang, Jianquan; Lin, HaifanAnnual review of genetics2011447-6921942366
Nanowire biosensors for label-free, real-time, ultrasensitive protein detection.Zheng, Gengfeng; Lieber, Charles MMethods in molecular biology (Clifton, N.J.)2011223-3721948419
Motor cortical networks for skilled movements have dynamic properties that are related to accurate reaching.Putrino, David F; Chen, Zhe; Ghosh, Soumya; Brown, Emery NNeural plasticity201141354322007332
Protein kinase C ýý is required for T cell activation and homeostatic proliferation.Fu, Guo; Hu, Jianfang; Niederberger-Magnenat, Nathalie; Rybakin, Vasily; Casas, Javier; Yachi, Pia P; Feldstein, Stephanie; Ma, Bo; Hoerter, John A H; Ampudia, Jeanette; Rigaud, Stephanie; Lambolez, Florence; Gavin, Amanda L; Sauer, Karsten; Cheroutre, HiScience signaling2011ra8422155788
Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.Khan, Zia; Amini, Sasan; Bloom, Joshua S; Ruse, Cristian; Caudy, Amy A; Kruglyak, Leonid; Singh, Mona; Perlman, David H; Tavazoie, SaeedGenome biology2011R12222182234
What limits the efficiency of double-strand break-dependent stress-induced mutation in Escherichia coli?Shee, Chandan; Ponder, Rebecca; Gibson, Janet L; Rosenberg, Susan MJournal of molecular microbiology and biotechnology20118-1922248539
Monkey models for brain-machine interfaces: the need for maintaining diversity.Nuyujukian, Paul; Fan, Joline M; Gilja, Vikash; Kalanithi, Paul S; Chestek, Cindy A; Shenoy, Krishna VConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20111301-522254555
A state-space model of the burst suppression ratio.Chemali, Jessica J; Wong, K F Kevin; Solt, Ken; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20111431-422254587
Correcting for serial dependence in studies of respiratory dynamics.Gong, Jen J; Wong, Kin Foon Kevin; Cotten, Joseph F; Solt, Ken; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20111721-422254658
Phase-based measures of cross-frequency coupling in brain electrical dynamics under general anesthesia.Mukamel, Eran A; Wong, Kin Foon; Prerau, Michael J; Brown, Emery N; Purdon, Patrick LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20111981-422254722
Point-process analysis of neural spiking activity of muscle spindles recorded from thin-film longitudinal intrafascicular electrodes.Citi, Luca; Djilas, Milan; Azevedo-Coste, Christine; Yoshida, Ken; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20112311-422254803
Modeling two-photon calcium fluorescence of episodic V1 recordings using multifrequency analysis.Zheng, Henry W; Malik, Wasim Q; Runyan, Caroline A; Sur, Mriganka; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20113016-922254975
Assessing neuronal interactions of cell assemblies during general anesthesia.Chen, Zhe; Vijayan, Sujith; Ching, ShiNung; Hale, Greg; Flores, Francisco J; Wilson, Matthew A; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20114175-822255259
Bayesian analysis of trinomial data in behavioral experiments and its application to human studies of general anesthesia.Wong, Kin Foon Kevin; Smith, Anne C; Pierce, Eric T; Harrell, P Grace; Walsh, John L; Salazar, Andres Felipe; Tavares, Casie L; Cimenser, Aylin; Prerau, Michael J; Mukamel, Eran A; Sampson, Aaron; Purdon, Patrick L; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20114705-822255388
Robust time-varying multivariate coherence estimation: application to electroencephalogram recordings during general anesthesia.Wong, Kin Foon Kevin; Mukamel, Eran A; Salazar, Andres Felipe; Pierce, Eric T; Harrell, P Grace; Walsh, John L; Sampson, Aaron; Brown, Emery N; Purdon, Patrick LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20114725-822255393
Instantaneous assessment of autonomic cardiovascular control during general anesthesia.Chen, Zhe; Citi, Luca; Purdon, Patrick L; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20118444-722256307
Cortical correlates of fitts' law.Ifft, Peter J; Lebedev, Mikhail A; Nicolelis, Miguel A LFrontiers in integrative neuroscience20118522275888
Culture environment-induced pluripotency of SACK-expanded tissue stem cells.Pare, Jean-Francois; Sherley, James LJournal of biomedicine & biotechnology201131245722523467
General anesthesia, sleep, and coma.Brown, Emery N; Lydic, Ralph; Schiff, Nicholas DThe New England journal of medicine2010 Dec 302638-5021190458
Thermodynamic analysis of ligand-induced changes in protein thermal unfolding applied to high-throughput determination of ligand affinities with extrinsic fluorescent dyes.Layton, Curtis J; Hellinga, Homme WBiochemistry2010 Dec 2810831-4121050007
Thalamocortical model for a propofol-induced alpha-rhythm associated with loss of consciousness.Ching, Shinung; Cimenser, Aylin; Purdon, Patrick L; Brown, Emery N; Kopell, Nancy JProceedings of the National Academy of Sciences of the United States of America2010 Dec 2822665-7021149695
IL-4/STAT6 immune axis regulates peripheral nutrient metabolism and insulin sensitivity.Ricardo-Gonzalez, Roberto R; Red Eagle, Alex; Odegaard, Justin I; Jouihan, Hani; Morel, Christine R; Heredia, Jose E; Mukundan, Lata; Wu, Davina; Locksley, Richard M; Chawla, AjayProceedings of the National Academy of Sciences of the United States of America2010 Dec 2822617-2221149710
A computational model predicts Xenopus meiotic spindle organization.Loughlin, Rose; Heald, Rebecca; Nedelec, FrancoisThe Journal of cell biology2010 Dec 271239-4921173114
Tunable bifunctional silyl ether cross-linkers for the design of acid-sensitive biomaterials.Parrott, Matthew C; Luft, J Chris; Byrne, James D; Fain, John H; Napier, Mary E; Desimone, Joseph MJournal of the American Chemical Society2010 Dec 2217928-3221105720
Three-dimensional scaffolds for tissue engineering: the importance of uniformity in pore size and structure.Choi, Sung-Wook; Zhang, Yu; Xia, YounanLangmuir : the ACS journal of surfaces and colloids2010 Dec 2119001-621090781
Fetal and adult hematopoietic stem cells give rise to distinct T cell lineages in humans.Mold, Jeff E; Venkatasubrahmanyam, Shivkumar; Burt, Trevor D; Michaelsson, Jakob; Rivera, Jose M; Galkina, Sofiya A; Weinberg, Kenneth; Stoddart, Cheryl A; McCune, Joseph MScience (New York, N.Y.)2010 Dec 171695-921164017
MicroRNAs in a cardiac loop: progenitor or myocyte?Evans, Sylvia M; Moretti, Alessandra; Laugwitz, Karl-LudwigDevelopmental cell2010 Dec 14787-821145492
An oscillatory switch in mTOR kinase activity sets regulatory T cell responsiveness.Procaccini, Claudio; De Rosa, Veronica; Galgani, Mario; Abanni, Luisa; Cali, Gaetano; Porcellini, Antonio; Carbone, Fortunata; Fontana, Silvia; Horvath, Tamas L; La Cava, Antonio; Matarese, GiuseppeImmunity2010 Dec 14929-4121145759
Myocardial lineage development.Evans, Sylvia M; Yelon, Deborah; Conlon, Frank L; Kirby, Margaret LCirculation research2010 Dec 101428-4421148449
SmashCell: a software framework for the analysis of single-cell amplified genome sequences.Harrington, Eoghan D; Arumugam, Manimozhiyan; Raes, Jeroen; Bork, Peer; Relman, David ABioinformatics (Oxford, England)2010 Dec 12979-8020966005
IL-22+ CD4+ T cells are associated with therapeutic trichuris trichiura infection in an ulcerative colitis patient.Broadhurst, Mara J; Leung, Jacqueline M; Kashyap, Vikram; McCune, Joseph M; Mahadevan, Uma; McKerrow, James H; Loke, P'ngScience translational medicine2010 Dec 160ra8821123809
The Temporal Structure of Scientific Consensus Formation.Shwed, Uri; Bearman, Peter SAmerican sociological review2010 Dec 1817-84021886269
Development of antibody surrogates for the treatment of cancers and autoimmune disease.Kodadek, ThomasCurrent opinion in chemical biology2010 Dec721-720674470
Synthetic receptors with antibody-like binding affinities.Kodadek, ThomasCurrent opinion in chemical biology2010 Dec713-2020674471
Autonomous zinc-finger nuclease pairs for targeted chromosomal deletion.Sollu, Cem; Pars, Kaweh; Cornu, Tatjana I; Thibodeau-Beganny, Stacey; Maeder, Morgan L; Joung, J Keith; Heilbronn, Regine; Cathomen, ToniNucleic acids research2010 Dec8269-7620716517
Transcription by the numbers redux: experiments and calculations that surprise.Garcia, Hernan G; Sanchez, Alvaro; Kuhlman, Thomas; Kondev, Jane; Phillips, RobTrends in cell biology2010 Dec723-3320801657
Selective degradation of aggregate-prone CryAB mutants by HSPB1 is mediated by ubiquitin-proteasome pathways.Zhang, Huali; Rajasekaran, Namakkal S; Orosz, Andras; Xiao, Xianzhong; Rechsteiner, Martin; Benjamin, Ivor JJournal of molecular and cellular cardiology2010 Dec918-3020863832
Inorganic nanoparticle-based contrast agents for molecular imaging.Cho, Eun Chul; Glaus, Charles; Chen, Jingyi; Welch, Michael J; Xia, YounanTrends in molecular medicine2010 Dec561-7321074494
Transgenerational genetic effects.Nelson, Vicki R; Nadeau, Joseph HEpigenomics2010 Dec797-80622122083
Lynx1, a cholinergic brake, limits plasticity in adult visual cortex.Morishita, Hirofumi; Miwa, Julie M; Heintz, Nathaniel; Hensch, Takao KScience (New York, N.Y.)2010 Nov 261238-4021071629
Minimal bending energies of bilayer polyhedra.Haselwandter, Christoph A; Phillips, RobPhysical review letters2010 Nov 2622810121231425
Au@Ag core-shell nanocubes with finely tuned and well-controlled sizes, shell thicknesses, and optical properties.Ma, Yanyun; Li, Weiyang; Cho, Eun Chul; Li, Zhiyuan; Yu, Taekyung; Zeng, Jie; Xie, Zhaoxiong; Xia, YounanACS nano2010 Nov 236725-3420964400
Engineering the Properties of Metal Nanostructures via Galvanic Replacement Reactions.Cobley, Claire M; Xia, YounanMaterials science & engineering. R, Reports : a review journal2010 Nov 2244-6221180400
Cortical preparatory activity: representation of movement or first cog in a dynamical machine?Churchland, Mark M; Cunningham, John P; Kaufman, Matthew T; Ryu, Stephen I; Shenoy, Krishna VNeuron2010 Nov 4387-40021040842
Naive human T cells are activated and proliferate in response to the heme oxygenase-1 inhibitor tin mesoporphyrin.Burt, Trevor D; Seu, Lillian; Mold, Jeffrey E; Kappas, Attallah; McCune, Joseph MJournal of immunology (Baltimore, Md. : 1950)2010 Nov 15279-8820921523
Running hot and cold: behavioral strategies, neural circuits, and the molecular machinery for thermotaxis in C. elegans and Drosophila.Garrity, Paul A; Goodman, Miriam B; Samuel, Aravinthan D; Sengupta, PialiGenes & development2010 Nov 12365-8221041406
Chronic label-free volumetric photoacoustic microscopy of melanoma cells in three-dimensional porous scaffolds.Zhang, Yu; Cai, Xin; Choi, Sung-Wook; Kim, Chulhong; Wang, Lihong V; Xia, YounanBiomaterials2010 Nov8651-820727581
Developmental regulation of group I metabotropic glutamate receptors in the premature brain and their protective role in a rodent model of periventricular leukomalacia.Jantzie, Lauren L; Talos, Delia M; Selip, Debra B; An, Li; Jackson, Michele C; Folkerth, Rebecca D; Deng, Wenbin; Jensen, Frances ENeuron glia biology2010 Nov277-8822169210
Imaging activity-dependent regulation of neurexin-neuroligin interactions using trans-synaptic enzymatic biotinylation.Thyagarajan, Amar; Ting, Alice YCell2010 Oct 29456-6920933261
Cellular response of polyvalent oligonucleotide-gold nanoparticle conjugates.Massich, Matthew D; Giljohann, David A; Schmucker, Abrin L; Patel, Pinal C; Mirkin, Chad AACS nano2010 Oct 265641-620860397
The aging stress response.Haigis, Marcia C; Yankner, Bruce AMolecular cell2010 Oct 22333-4420965426
Digital PCR on a SlipChip.Shen, Feng; Du, Wenbin; Kreutz, Jason E; Fok, Alice; Ismagilov, Rustem FLab on a chip2010 Oct 212666-7220596567
A temperature-sensitive drug release system based on phase-change materials.Choi, Sung-Wook; Zhang, Yu; Xia, YounanAngewandte Chemie (International ed. in English)2010 Oct 187904-820839209
Nuclear size is regulated by importin ýý and Ntf2 in Xenopus.Levy, Daniel L; Heald, RebeccaCell2010 Oct 15288-9820946986
Nanoelectromechanical resonator arrays for ultrafast, gas-phase chromatographic chemical analysis.Li, Mo; Myers, E B; Tang, H X; Aldridge, S J; McCaig, H C; Whiting, J J; Simonson, R J; Lewis, N S; Roukes, M LNano letters2010 Oct 133899-90320795729
Broadband plasmonic microlenses based on patches of nanoholes.Gao, Hanwei; Hyun, Jerome K; Lee, Min Hyung; Yang, Jiun-Chan; Lauhon, Lincoln J; Odom, Teri WNano letters2010 Oct 134111-620839781
Biocompatibility and Reduced Drug Absorption of Sol-Gel-Treated Poly(dimethyl siloxane) for Microfluidic Cell Culture Applications.Gomez-Sjoberg, Rafael; Leyrat, Anne A; Houseman, Benjamin T; Shokat, Kevan; Quake, Stephen RAnalytical chemistry2010 Oct 1120936785
Multifactorial determinants of protein expression in prokaryotic open reading frames.Allert, Malin; Cox, J Colin; Hellinga, Homme WJournal of molecular biology2010 Oct 8905-1820727358
The potential functions of primary microRNAs in target recognition and repression.Trujillo, Robin Deis; Yue, Si-Biao; Tang, Yujie; O'Gorman, William E; Chen, Chang-ZhengThe EMBO journal2010 Oct 63272-8520808284
The CRAC channel activator STIM1 binds and inhibits L-type voltage-gated calcium channels.Park, Chan Young; Shcheglovitov, Aleksandr; Dolmetsch, RicardoScience (New York, N.Y.)2010 Oct 1101-520929812
Engineering the genomes of wild insect populations: challenges, and opportunities provided by synthetic Medea selfish genetic elements.Hay, Bruce A; Chen, Chun-Hong; Ward, Catherine M; Huang, Haixia; Su, Jessica T; Guo, MingJournal of insect physiology2010 Oct1402-1320570677
Discrete time rescaling theorem: determining goodness of fit for discrete time statistical models of neural spiking.Haslinger, Robert; Pipa, Gordon; Brown, EmeryNeural computation2010 Oct2477-50620608868
Autonomous head-mounted electrophysiology systems for freely behaving primates.Gilja, Vikash; Chestek, Cindy A; Nuyujukian, Paul; Foster, Justin; Shenoy, Krishna VCurrent opinion in neurobiology2010 Oct676-8620655733
Conserved F-actin dynamics and force transmission at cell adhesions.Maruthamuthu, Venkat; Aratyn-Schaus, Yvonne; Gardel, Margaret LCurrent opinion in cell biology2010 Oct583-820728328
Characterization of the proteomes associating with three distinct membrane raft sub-types in murine sperm.Asano, Atsushi; Nelson, Jacquelyn L; Zhang, Sheng; Travis, Alexander JProteomics2010 Oct3494-50520815087
Using light to control signaling cascades in live neurons.Rana, Anshul; Dolmetsch, Ricardo ECurrent opinion in neurobiology2010 Oct617-2220850295
In obesity and weight loss, all roads lead to the mighty macrophage.Red Eagle, Alex; Chawla, AjayThe Journal of clinical investigation2010 Oct3437-4020877005
Passenger mutations as a marker of clonal cell lineages in emerging neoplasia.Salk, Jesse J; Horwitz, Marshall SSeminars in cancer biology2010 Oct294-30320951806
The role of affective experience in work motivation: Test of a conceptual model.Seo, Myeong-Gu; Bartunek, Jean M; Barrett, Lisa FeldmanJournal of organizational behavior2010 Oct951-96821785527
Radially aligned, electrospun nanofibers as dural substitutes for wound closure and tissue regeneration applications.Xie, Jingwei; Macewan, Matthew R; Ray, Wilson Z; Liu, Wenying; Siewe, Daku Y; Xia, YounanACS nano2010 Sep 285027-3620695478
Probing the micelle-bound aggregation-prone state of ýý-synuclein with (19)F NMR spectroscopy.Wang, Gui-Fang; Li, Conggang; Pielak, Gary JChembiochem : a European journal of chemical biology2010 Sep 241993-620730847
A general mechanism for network-dosage compensation in gene circuits.Acar, Murat; Pando, Bernardo F; Arnold, Frances H; Elowitz, Michael B; van Oudenaarden, AlexanderScience (New York, N.Y.)2010 Sep 241656-6020929850
Epigenetic memory in induced pluripotent stem cells.Kim, K; Doi, A; Wen, B; Ng, K; Zhao, R; Cahan, P; Kim, J; Aryee, M J; Ji, H; Ehrlich, L I R; Yabuuchi, A; Takeuchi, A; Cunniff, K C; Hongguang, H; McKinney-Freeman, S; Naveiras, O; Yoon, T J; Irizarry, R A; Jung, N; Seita, J; Hanna, J; Murakami, P; JaenisNature2010 Sep 16285-9020644535
A zyxin-mediated mechanism for actin stress fiber maintenance and repair.Smith, Mark A; Blankman, Elizabeth; Gardel, Margaret L; Luettjohann, Laura; Waterman, Clare M; Beckerle, Mary CDevelopmental cell2010 Sep 14365-7620833360
Tracking, tuning, and terminating microbial physiology using synthetic riboregulators.Callura, Jarred M; Dwyer, Daniel J; Isaacs, Farren J; Cantor, Charles R; Collins, James JProceedings of the National Academy of Sciences of the United States of America2010 Sep 715898-90320713708
Facile synthesis of Ag nanocubes of 30 to 70 nm in edge length with CF(3)COOAg as a precursor.Zhang, Qiang; Li, Weiyang; Wen, Long-Ping; Chen, Jingyi; Xia, YounanChemistry (Weinheim an der Bergstrasse, Germany)2010 Sep 310234-920593441
Bacterial charity work leads to population-wide resistance.Lee, Henry H; Molla, Michael N; Cantor, Charles R; Collins, James JNature2010 Sep 282-520811456
Microbial invasion of the amniotic cavity in pregnancies with small-for-gestational-age fetuses.DiGiulio, Daniel B; Gervasi, Maria Teresa; Romero, Roberto; Vaisbuch, Edi; Mazaki-Tovi, Shali; Kusanovic, Juan Pedro; Seok, Kimberley S; Gomez, Ricardo; Mittal, Pooja; Gotsch, Francesca; Chaiworapongsa, Tinnakorn; Oyarzun, Enrique; Kim, Chong Jai; Relman,Journal of perinatal medicine2010 Sep495-50220482466
Microbial invasion of the amniotic cavity in preeclampsia as assessed by cultivation and sequence-based methods.DiGiulio, Daniel B; Gervasi, Mariateresa; Romero, Roberto; Mazaki-Tovi, Shali; Vaisbuch, Edi; Kusanovic, Juan Pedro; Seok, Kimberley S; Gomez, Ricardo; Mittal, Pooja; Gotsch, Francesca; Chaiworapongsa, Tinnakorn; Oyarzun, Enrique; Kim, Chong Jai; Relman, Journal of perinatal medicine2010 Sep503-1320482470
Comprehensive comparative analysis of strand-specific RNA sequencing methods.Levin, Joshua Z; Yassour, Moran; Adiconis, Xian; Nusbaum, Chad; Thompson, Dawn Anne; Friedman, Nir; Gnirke, Andreas; Regev, AvivNature methods2010 Sep709-1520711195
Volume exclusion and soft interaction effects on protein stability under crowded conditions.Miklos, Andrew C; Li, Conggang; Sharaf, Naima G; Pielak, Gary JBiochemistry2010 Aug 246984-9120672856
In vivo molecular photoacoustic tomography of melanomas targeted by bioconjugated gold nanocages.Kim, Chulhong; Cho, Eun Chul; Chen, Jingyi; Song, Kwang Hyun; Au, Leslie; Favazza, Christopher; Zhang, Qiang; Cobley, Claire M; Gao, Feng; Xia, Younan; Wang, Lihong VACS nano2010 Aug 244559-6420731439
Chemical stimulation of the Arabidopsis thaliana root using multi-laminar flow on a microfluidic chip.Meier, Matthias; Lucchetta, Elena M; Ismagilov, Rustem FLab on a chip2010 Aug 212147-5320544086
Steroid receptor coactivator-3 expression in lung cancer and its role in the regulation of cancer cell survival and proliferation.Cai, Di; Shames, David S; Raso, Maria Gabriela; Xie, Yang; Kim, Young H; Pollack, Jonathan R; Girard, Luc; Sullivan, James P; Gao, Boning; Peyton, Michael; Nanjundan, Meera; Byers, Lauren; Heymach, John; Mills, Gordon; Gazdar, Adi F; Wistuba, Ignacio; KodCancer research2010 Aug 156477-8520663904
Three-dimensional, flexible nanoscale field-effect transistors as localized bioprobes.Tian, Bozhi; Cohen-Karni, Tzahi; Qing, Quan; Duan, Xiaojie; Xie, Ping; Lieber, Charles MScience (New York, N.Y.)2010 Aug 13830-420705858
A custody battle for the mind: evidence for extensive imprinting in the brain.Tollkuhn, Jessica; Xu, Xiaohong; Shah, Nirao MNeuron2010 Aug 12359-6220696374
Enhanced optical transmission mediated by localized plasmons in anisotropic, three-dimensional nanohole arrays.Yang, Jiun-Chan; Gao, Hanwei; Suh, Jae Yong; Zhou, Wei; Lee, Min Hyung; Odom, Teri WNano letters2010 Aug 113173-820698633
Frequency domain detection of biomolecules using silicon nanowire biosensors.Zheng, Gengfeng; Gao, Xuan P A; Lieber, Charles MNano letters2010 Aug 113179-8320698634
Determinants of divergent adaptation and Dobzhansky-Muller interaction in experimental yeast populations.Anderson, James B; Funt, Jason; Thompson, Dawn Anne; Prabhu, Snehit; Socha, Amanda; Sirjusingh, Caroline; Dettman, Jeremy R; Parreiras, Lucas; Guttman, David S; Regev, Aviv; Kohn, Linda MCurrent biology : CB2010 Aug 101383-820637622
Genome-wide analysis reveals mechanisms modulating autophagy in normal brain aging and in Alzheimer's disease.Lipinski, Marta M; Zheng, Bin; Lu, Tao; Yan, Zhenyu; Py, Benedicte F; Ng, Aylwin; Xavier, Ramnik J; Li, Cheng; Yankner, Bruce A; Scherzer, Clemens R; Yuan, JunyingProceedings of the National Academy of Sciences of the United States of America2010 Aug 1014164-920660724
Ion-dependent dynamics of DNA ejections for bacteriophage lambda.Wu, David; Van Valen, David; Hu, Qicong; Phillips, RobBiophysical journal2010 Aug 91101-920712993
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.Huarte, Maite; Guttman, Mitchell; Feldser, David; Garber, Manuel; Koziol, Magdalena J; Kenzelmann-Broz, Daniela; Khalil, Ahmad M; Zuk, Or; Amit, Ido; Rabani, Michal; Attardi, Laura D; Regev, Aviv; Lander, Eric S; Jacks, Tyler; Rinn, John LCell2010 Aug 6409-1920673990
Regulation of myeloid leukaemia by the cell-fate determinant Musashi.Ito, Takahiro; Kwon, Hyog Young; Zimdahl, Bryan; Congdon, Kendra L; Blum, Jordan; Lento, William E; Zhao, Chen; Lagoo, Anand; Gerrard, Gareth; Foroni, Letizia; Goldman, John; Goh, Harriet; Kim, Soo-Hyun; Kim, Dong-Wook; Chuah, Charles; Oehler, Vivian G; RNature2010 Aug 5765-820639863
Macromolecular crowding remodels the energy landscape of a protein by favoring a more compact unfolded state.Hong, Jiang; Gierasch, Lila MJournal of the American Chemical Society2010 Aug 410445-5220662522
Towards A Fully Automated High-Throughput Phototransfection System.Cappelleri, David J; Halasz, Adam; Sul, Jai-Yoon; Kim, Tae Kyung; Eberwine, James; Kumar, VijayJALA (Charlottesville, Va.)2010 Aug 1329-34120706617
Bacterial diversity in the oral cavity of 10 healthy individuals.Bik, Elisabeth M; Long, Clara Davis; Armitage, Gary C; Loomer, Peter; Emerson, Joanne; Mongodin, Emmanuel F; Nelson, Karen E; Gill, Steven R; Fraser-Liggett, Claire M; Relman, David AThe ISME journal2010 Aug962-7420336157
Roles of monkey premotor neuron classes in movement preparation and execution.Kaufman, Matthew T; Churchland, Mark M; Santhanam, Gopal; Yu, Byron M; Afshar, Afsheen; Ryu, Stephen I; Shenoy, Krishna VJournal of neurophysiology2010 Aug799-81020538784
Reading chimpanzee faces: evidence for the role of verbal labels in categorical perception of emotion.Fugate, Jennifer M B; Gouzoules, Harold; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2010 Aug544-5420677871
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells.Taniguchi, Yuichi; Choi, Paul J; Li, Gene-Wei; Chen, Huiyi; Babu, Mohan; Hearn, Jeremy; Emili, Andrew; Xie, X SunneyScience (New York, N.Y.)2010 Jul 30533-820671182
Regulation of cell motile behavior by crosstalk between cadherin- and integrin-mediated adhesions.Borghi, Nicolas; Lowndes, Molly; Maruthamuthu, Venkat; Gardel, Margaret L; Nelson, W JamesProceedings of the National Academy of Sciences of the United States of America2010 Jul 2713324-920566866
In vitro mineralization by preosteoblasts in poly(DL-lactide-co-glycolide) inverse opal scaffolds reinforced with hydroxyapatite nanoparticles.Choi, Sung-Wook; Zhang, Yu; Thomopoulos, Stavros; Xia, YounanLangmuir : the ACS journal of surfaces and colloids2010 Jul 2012126-3120450216
Dead-end filling of SlipChip evaluated theoretically and experimentally as a function of the surface chemistry and the gap size between the plates for lubricated and dry SlipChips.Li, Liang; Karymov, Mikhail A; Nichols, Kevin P; Ismagilov, Rustem FLangmuir : the ACS journal of surfaces and colloids2010 Jul 2012465-7120575548
Uniform beads with controllable pore sizes for biomedical applications.Choi, Sung-Wook; Yeh, Yi-Chun; Zhang, Yu; Sung, Hsing-Wen; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2010 Jul 191492-820578116
Effects of proteins on protein diffusion.Wang, Yaqiang; Li, Conggang; Pielak, Gary JJournal of the American Chemical Society2010 Jul 149392-720560582
Transient frictional slip between integrin and the ECM in focal adhesions under myosin II tension.Aratyn-Schaus, Yvonne; Gardel, Margaret LCurrent biology : CB2010 Jul 131145-5320541412
Discovery of a proneurogenic, neuroprotective chemical.Pieper, Andrew A; Xie, Shanhai; Capota, Emanuela; Estill, Sandi Jo; Zhong, Jeannie; Long, Jeffrey M; Becker, Ginger L; Huntington, Paula; Goldman, Shauna E; Shen, Ching-Han; Capota, Maria; Britt, Jeremiah K; Kotti, Tiina; Ure, Kerstin; Brat, Daniel J; WilCell2010 Jul 939-5120603013
Genetic technologies. Synthetic "life," ethics, national security, and public discourse.Cho, Mildred K; Relman, David AScience (New York, N.Y.)2010 Jul 238-920595601
Prevalence and diversity of microbes in the amniotic fluid, the fetal inflammatory response, and pregnancy outcome in women with preterm pre-labor rupture of membranes.DiGiulio, Daniel B; Romero, Roberto; Kusanovic, Juan Pedro; Gomez, Ricardo; Kim, Chong Jai; Seok, Kimberley S; Gotsch, Francesca; Mazaki-Tovi, Shali; Vaisbuch, Edi; Sanders, Katherine; Bik, Elisabeth M; Chaiworapongsa, Tinnakorn; Oyarzun, Enrique; Relman,American journal of reproductive immunology (New York, N.Y. : 1989)2010 Jul 138-5720331587
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool.Sander, Jeffry D; Maeder, Morgan L; Reyon, Deepak; Voytas, Daniel F; Joung, J Keith; Dobbs, DrenaNucleic acids research2010 JulW462-820435679
Lin28a transgenic mice manifest size and puberty phenotypes identified in human genetic association studies.Zhu, Hao; Shah, Samar; Shyh-Chang, Ng; Shinoda, Gen; Einhorn, William S; Viswanathan, Srinivas R; Takeuchi, Ayumu; Grasemann, Corinna; Rinn, John L; Lopez, Mary F; Hirschhorn, Joel N; Palmert, Mark R; Daley, George QNature genetics2010 Jul626-3020512147
A forward-genetic screen and dynamic analysis of lambda phage host-dependencies reveals an extensive interaction network and a new anti-viral strategy.Maynard, Nathaniel D; Birch, Elsa W; Sanghvi, Jayodita C; Chen, Lu; Gutschow, Miriam V; Covert, Markus WPLoS genetics2010 Jule100101720628568
The virus as metabolic engineer.Maynard, Nathaniel D; Gutschow, Miriam V; Birch, Elsa W; Covert, Markus WBiotechnology journal2010 Jul686-9420665642
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases.Zhang, Feng; Maeder, Morgan L; Unger-Wallace, Erica; Hoshaw, Justin P; Reyon, Deepak; Christian, Michelle; Li, Xiaohong; Pierick, Christopher J; Dobbs, Drena; Peterson, Thomas; Joung, J Keith; Voytas, Daniel FProceedings of the National Academy of Sciences of the United States of America2010 Jun 2912028-3320508152
Synthetic strategies for studying embryonic development.Ouyang, Xiaohu; Chen, James KChemistry & biology2010 Jun 25590-60620609409
Establishing the design rules for DNA-mediated programmable colloidal crystallization.Macfarlane, Robert J; Jones, Matthew R; Senesi, Andrew J; Young, Kaylie L; Lee, Byeongdu; Wu, Jinsong; Mirkin, Chad AAngewandte Chemie (International ed. in English)2010 Jun 214589-9220486143
Differential involvement of excitatory and inhibitory neurons of cat motor cortex in coincident spike activity related to behavioral context.Putrino, David; Brown, Emery N; Mastaglia, Frank L; Ghosh, SoumyaThe Journal of neuroscience : the official journal of the Society for Neuroscience2010 Jun 98048-5620534853
Conversion of a yeast prion protein to an infectious form in bacteria.Garrity, Sean J; Sivanathan, Viknesh; Dong, Jijun; Lindquist, Susan; Hochschild, AnnProceedings of the National Academy of Sciences of the United States of America2010 Jun 810596-60120484678
Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli.Goodarzi, Hani; Bennett, Bryson D; Amini, Sasan; Reaves, Marshall L; Hottes, Alison K; Rabinowitz, Joshua D; Tavazoie, SaeedMolecular systems biology2010 Jun 837820531407
Nanoliter multiplex PCR arrays on a SlipChip.Shen, Feng; Du, Wenbin; Davydova, Elena K; Karymov, Mikhail A; Pandey, Janmajay; Ismagilov, Rustem FAnalytical chemistry2010 Jun 14606-1220446698
Characterizing nonlinear heartbeat dynamics within a point process framework.Chen, Zhe; Brown, Emery N; Barbieri, RiccardoIEEE transactions on bio-medical engineering2010 Jun1335-4720172783
Using point process models to compare neural spiking activity in the subthalamic nucleus of Parkinson's patients and a healthy primate.Sarma, Sridevi V; Eden, Uri T; Cheng, Ming L; Williams, Ziv M; Hu, Rollin; Eskandar, Emad; Brown, Emery NIEEE transactions on bio-medical engineering2010 Jun1297-30520172804
RNA: state memory and mediator of cellular phenotype.Kim, Junhyong; Eberwine, JamesTrends in cell biology2010 Jun311-820382532
How antibiotics kill bacteria: from targets to networks.Kohanski, Michael A; Dwyer, Daniel J; Collins, James JNature reviews. Microbiology2010 Jun423-3520440275
Control of macrophage activation and function by PPARs.Chawla, AjayCirculation research2010 May 281559-6920508200
Unique physical properties and interactions of the domains of methylated DNA binding protein 2.Ghosh, Rajarshi P; Nikitina, Tatiana; Horowitz-Scherer, Rachel A; Gierasch, Lila M; Uversky, Vladimir N; Hite, Kristopher; Hansen, Jeffrey C; Woodcock, Christopher LBiochemistry2010 May 254395-41020405910
Fabrication of Density Gradients of Biodegradable Polymer Microparticles and Their Use in Guiding Neurite Outgrowth.Li, Xiaoran; Macewan, Matthew R; Xie Dr, Jingwei; Siewe, Daku; Yuan, Xiaoyan; Xia, YounanAdvanced functional materials2010 May 251632-163721687818
Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection.Kosmrlj, Andrej; Read, Elizabeth L; Qi, Ying; Allen, Todd M; Altfeld, Marcus; Deeks, Steven G; Pereyra, Florencia; Carrington, Mary; Walker, Bruce D; Chakraborty, Arup KNature2010 May 20350-420445539
Tryptophan catabolism by indoleamine 2,3-dioxygenase 1 alters the balance of TH17 to regulatory T cells in HIV disease.Favre, David; Mold, Jeff; Hunt, Peter W; Kanwar, Bittoo; Loke, P'ng; Seu, Lillian; Barbour, Jason D; Lowe, Margaret M; Jayawardene, Anura; Aweeka, Francesca; Huang, Yong; Douek, Daniel C; Brenchley, Jason M; Martin, Jeffrey N; Hecht, Frederick M; Deeks, SScience translational medicine2010 May 1932ra3620484731
Optimization of traction force microscopy for micron-sized focal adhesions.Stricker, Jonathan; Sabass, Benedikt; Schwarz, Ulrich S; Gardel, Margaret LJournal of physics. Condensed matter : an Institute of Physics journal2010 May 1919410420523913
Cell-substrate interactions.Gardel, Margaret; Schwarz, UlrichJournal of physics. Condensed matter : an Institute of Physics journal2010 May 1919030121386358
Colloquium paper: working toward a synthesis of archaeological, linguistic, and genetic data for inferring African population history.Scheinfeldt, Laura B; Soi, Sameer; Tishkoff, Sarah AProceedings of the National Academy of Sciences of the United States of America2010 May 118931-820445100
Seed-mediated synthesis of truncated gold decahedrons with a AuCl/oleylamine complex as precursor.Ma, Yanyun; Zeng, Jie; Li, Weiyang; McKiernan, Maureen; Xie, Zhaoxiong; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2010 May 41930-420301132
Bright three-photon luminescence from gold/silver alloyed nanostructures for bioimaging with negligible photothermal toxicity.Tong, Ling; Cobley, Claire M; Chen, Jingyi; Xia, Younan; Cheng, Ji-XinAngewandte Chemie (International ed. in English)2010 May 33485-820544899
The miR-17-92 microRNA polycistron regulates MLL leukemia stem cell potential by modulating p21 expression.Wong, Piu; Iwasaki, Masayuki; Somervaille, Tim C P; Ficara, Francesca; Carico, Christine; Arnold, Christopher; Chen, Chang-Zheng; Cleary, Michael LCancer research2010 May 13833-4220406979
The spatial structure of autism in California, 1993-2001.Mazumdar, Soumya; King, Marissa; Liu, Ka-Yuet; Zerubavel, Noam; Bearman, PeterHealth & place2010 May539-4620097113
Targeting gold nanocages to cancer cells for photothermal destruction and drug delivery.Cobley, Claire M; Au, Leslie; Chen, Jingyi; Xia, YounanExpert opinion on drug delivery2010 May577-8720345327
Synthetic biology: applications come of age.Khalil, Ahmad S; Collins, James JNature reviews. Genetics2010 May367-7920395970
Dynamic single-cell imaging of direct reprogramming reveals an early specifying event.Smith, Zachary D; Nachman, Iftach; Regev, Aviv; Meissner, AlexanderNature biotechnology2010 May521-620436460
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.Guttman, Mitchell; Garber, Manuel; Levin, Joshua Z; Donaghey, Julie; Robinson, James; Adiconis, Xian; Fan, Lin; Koziol, Magdalena J; Gnirke, Andreas; Nusbaum, Chad; Rinn, John L; Lander, Eric S; Regev, AvivNature biotechnology2010 May503-1020436462
Social demographic change and autism.Liu, Kayuet; Zerubavel, Noam; Bearman, PeterDemography2010 May327-4320608100
Design and Implementation of Functional Nanoelectronic Interfaces With Biomolecules, Cells, and Tissue Using Nanowire Device Arrays.Timko, Brian P; Cohen-Karni, Tzahi; Qing, Quan; Tian, Bozhi; Lieber, Charles MIEEE transactions on nanotechnology2010 May269-28021785576
Ostwald ripening of clusters during protein crystallization.Streets, Aaron M; Quake, Stephen RPhysical review letters2010 Apr 3017810220482145
Knockdown of Fanconi anemia genes in human embryonic stem cells reveals early developmental defects in the hematopoietic lineage.Tulpule, Asmin; Lensch, M William; Miller, Justine D; Austin, Karyn; D'Andrea, Alan; Schlaeger, Thorsten M; Shimamura, Akiko; Daley, George QBlood2010 Apr 293453-6220089964
The androgen receptor governs the execution, but not programming, of male sexual and territorial behaviors.Juntti, Scott A; Tollkuhn, Jessica; Wu, Melody V; Fraser, Eleanor J; Soderborg, Taylor; Tan, Stella; Honda, Shin-Ichiro; Harada, Nobuhiro; Shah, Nirao MNeuron2010 Apr 29260-7220435002
Gold nanoparticles for biology and medicine.Giljohann, David A; Seferos, Dwight S; Daniel, Weston L; Massich, Matthew D; Patel, Pinal C; Mirkin, Chad AAngewandte Chemie (International ed. in English)2010 Apr 263280-9420401880
SlipChip for immunoassays in nanoliter volumes.Liu, Weishan; Chen, Delai; Du, Wenbin; Nichols, Kevin P; Ismagilov, Rustem FAnalytical chemistry2010 Apr 153276-8220334360
Gold nanocages as photothermal transducers for cancer treatment.Chen, Jingyi; Glaus, Charles; Laforest, Richard; Zhang, Qiang; Yang, Miaoxian; Gidding, Michael; Welch, Michael J; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2010 Apr 9811-720225187
Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures.Tsang, John S; Ebert, Margaret S; van Oudenaarden, AlexanderMolecular cell2010 Apr 9140-5320385095
Chromatin signature of embryonic pluripotency is established during genome activation.Vastenhouw, Nadine L; Zhang, Yong; Woods, Ian G; Imam, Farhad; Regev, Aviv; Liu, X Shirley; Rinn, John; Schier, Alexander FNature2010 Apr 8922-620336069
Expression of the autoimmune susceptibility gene FcRL3 on human regulatory T cells is associated with dysfunction and high levels of programmed cell death-1.Swainson, Louise A; Mold, Jeff E; Bajpai, Urmila D; McCune, Joseph MJournal of immunology (Baltimore, Md. : 1950)2010 Apr 13639-4720190142
Gold Nanopyramids Assembled into High-Order Stacks Exhibit Increased SERS Response.Stoerzinger, Kelsey A; Hasan, Warefta; Lin, Julia Y; Robles, Alex; Odom, Teri WThe journal of physical chemistry letters2010 Apr 11046-105021666758
Digital transcriptome profiling from attomole-level RNA samples.Ozsolak, Fatih; Goren, Alon; Gymrek, Melissa; Guttman, Mitchell; Regev, Aviv; Bernstein, Bradley E; Milos, Patrice MGenome research2010 Apr519-2520133332
Activity in the barrel cortex during active behavior and sleep.Vijayan, Sujith; Hale, Greg J; Moore, Christopher I; Brown, Emery N; Wilson, MatthewJournal of neurophysiology2010 Apr2074-8420164403
Potent and selective photo-inactivation of proteins with peptoid-ruthenium conjugates.Lee, Jiyong; Udugamasooriya, D Gomika; Lim, Hyun-Suk; Kodadek, ThomasNature chemical biology2010 Apr258-6020228793
Context is routinely encoded during emotion perception.Barrett, Lisa Feldman; Kensinger, Elizabeth APsychological science2010 Apr595-920424107
Neural mechanisms of ageing and cognitive decline.Bishop, Nicholas A; Lu, Tao; Yankner, Bruce ANature2010 Mar 25529-3520336135
Navigational decision making in Drosophila thermotaxis.Luo, Linjiao; Gershow, Marc; Rosenzweig, Mark; Kang, Kyeongjin; Fang-Yen, Christopher; Garrity, Paul A; Samuel, Aravinthan D TThe Journal of neuroscience : the official journal of the Society for Neuroscience2010 Mar 244261-7220335462
Gene duplication and the evolution of ribosomal protein gene regulation in yeast.Wapinski, Ilan; Pfiffner, Jenna; French, Courtney; Socha, Amanda; Thompson, Dawn Anne; Regev, AvivProceedings of the National Academy of Sciences of the United States of America2010 Mar 235505-1020212107
Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor.Fosbrink, Matthew; Aye-Han, Nwe-Nwe; Cheong, Raymond; Levchenko, Andre; Zhang, JinProceedings of the National Academy of Sciences of the United States of America2010 Mar 235459-6420212108
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.Ma, Li-Jun; van der Does, H Charlotte; Borkovich, Katherine A; Coleman, Jeffrey J; Daboussi, Marie-Josee; Di Pietro, Antonio; Dufresne, Marie; Freitag, Michael; Grabherr, Manfred; Henrissat, Bernard; Houterman, Petra M; Kang, Seogchan; Shim, Won-Bo; WolosNature2010 Mar 18367-7320237561
Picomole-scale characterization of protein stability and function by quantitative cysteine reactivity.Isom, Daniel G; Vardy, Eyal; Oas, Terrence G; Hellinga, Homme WProceedings of the National Academy of Sciences of the United States of America2010 Mar 164908-1320194783
Telomere elongation in induced pluripotent stem cells from dyskeratosis congenita patients.Agarwal, Suneet; Loh, Yuin-Han; McLoughlin, Erin M; Huang, Junjiu; Park, In-Hyun; Miller, Justine D; Huo, Hongguang; Okuka, Maja; Dos Reis, Rosana Maria; Loewer, Sabine; Ng, Huck-Hui; Keefe, David L; Goldman, Frederick D; Klingelhutz, Aloysius J; Liu, LinNature2010 Mar 11292-620164838
Graphene and nanowire transistors for cellular interfaces and electrical recording.Cohen-Karni, Tzahi; Qing, Quan; Li, Qiang; Fang, Ying; Lieber, Charles MNano letters2010 Mar 101098-10220136098
Colorimetric Cu(2+) detection using DNA-modified gold-nanoparticle aggregates as probes and click chemistry.Xu, Xiaoyang; Daniel, Weston L; Wei, Wei; Mirkin, Chad ASmall (Weinheim an der Bergstrasse, Germany)2010 Mar 8623-620108231
A simple spectroscopic method for differentiating cellular uptakes of gold nanospheres and nanorods from their mixtures.Cho, Eun Chul; Liu, Yang; Xia, YounanAngewandte Chemie (International ed. in English)2010 Mar 81976-8020146292
Total synthesis of the polycyclic fungal metabolite (+/-)-communesin F.Liu, Peng; Seo, Jae Hong; Weinreb, Steven MAngewandte Chemie (International ed. in English)2010 Mar 82000-320175174
Dissolving Ag from Au-Ag Alloy Nanoboxes with H(2)O(2): A Method for Both Tailoring the Optical Properties and Measuring the H(2)O(2) Concentration.Zhang, Qiang; Cobley, Claire M; Zeng, Jie; Wen, Long-Ping; Chen, Jingyi; Xia, YounanThe journal of physical chemistry. C, Nanomaterials and interfaces2010 Mar 56396-640020495675
Estimated autism risk, older reproductive age, and parameterization.Durkin, Maureen S; Maenner, Matthew J; Newschaffer, Craig JAmerican journal of public health2010 Mar389-90; author reply 39020075308
Stimulus onset quenches neural variability: a widespread cortical phenomenon.Churchland, Mark M; Yu, Byron M; Cunningham, John P; Sugrue, Leo P; Cohen, Marlene R; Corrado, Greg S; Newsome, William T; Clark, Andrew M; Hosseini, Paymon; Scott, Benjamin B; Bradley, David C; Smith, Matthew A; Kohn, Adam; Movshon, J Anthony; Armstrong,Nature neuroscience2010 Mar369-7820173745
Microfluidic stochastic confinement enhances analysis of rare cells by isolating cells and creating high density environments for control of diffusible signals.Vincent, Meghan E; Liu, Weishan; Haney, Elizabeth B; Ismagilov, Rustem FChemical Society reviews2010 Mar974-8420179819
Oligonucleotide-based tools for studying zebrafish development.Shestopalov, Ilya A; Chen, James KZebrafish2010 Mar31-4020392138
Social influence and the autism epidemic.Liu, Ka-Yuet; King, Marissa; Bearman, Peter SAJS; American journal of sociology2010 Mar1387-43420503647
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The effects of size, shape, and surface functional group of gold nanostructures on their adsorption and internalization by cells.Cho, Eun Chul; Au, Leslie; Zhang, Qiang; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2010 Feb 22517-2220029850
Variability in gene expression underlies incomplete penetrance.Raj, Arjun; Rifkin, Scott A; Andersen, Erik; van Oudenaarden, AlexanderNature2010 Feb 18913-820164922
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Nature's molecular sponges: small heat shock proteins grow into their chaperone roles.Eyles, Stephen J; Gierasch, Lila MProceedings of the National Academy of Sciences of the United States of America2010 Feb 162727-820133678
Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis.Kohanski, Michael A; DePristo, Mark A; Collins, James JMolecular cell2010 Feb 12311-2020159551
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Single-molecule study of DNA polymerization activity of HIV-1 reverse transcriptase on DNA templates.Kim, Sangjin; Schroeder, Charles M; Xie, X SunneyJournal of molecular biology2010 Feb 5995-100619968999
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A bioreactor for in-cell protein NMR.Sharaf, Naima G; Barnes, Christopher O; Charlton, Lisa M; Young, Gregory B; Pielak, Gary JJournal of magnetic resonance (San Diego, Calif. : 1997)2010 Feb140-619910228
Genome editing with modularly assembled zinc-finger nucleases.Kim, Jin-Soo; Lee, Hyung Joo; Carroll, DanaNature methods2010 Feb91; author reply 91-220111032
IFN-alpha-induced upregulation of CCR5 leads to expanded HIV tropism in vivo.Stoddart, Cheryl A; Keir, Mary E; McCune, Joseph MPLoS pathogens2010 Febe100076620174557
Seamless bead to microarray screening: rapid identification of the highest affinity protein ligands from large combinatorial libraries.Astle, John M; Simpson, Levi S; Huang, Yong; Reddy, M Muralidhar; Wilson, Rosemary; Connell, Steven; Wilson, Johnnie; Kodadek, ThomasChemistry & biology2010 Jan 2938-4520142039
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Protein (19)F NMR in Escherichia coli.Li, Conggang; Wang, Gui-Fang; Wang, Yaqiang; Creager-Allen, Rachel; Lutz, Evan A; Scronce, Heidi; Slade, Kristin M; Ruf, Rebecca A S; Mehl, Ryan A; Pielak, Gary JJournal of the American Chemical Society2010 Jan 13321-720050707
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Autologous blood cell therapies from pluripotent stem cells.Lengerke, Claudia; Daley, George QBlood reviews2010 Jan27-3719910091
Targeting device therapy: genomics of sudden death.Frangiskakis, J Michael; London, BarryHeart failure clinics2010 Jan93-10019945065
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Electrospun nanofibers for neural tissue engineering.Xie, Jingwei; MacEwan, Matthew R; Schwartz, Andrea G; Xia, YounanNanoscale2010 Jan35-4420648362
Mechanical integration of actin and adhesion dynamics in cell migration.Gardel, Margaret L; Schneider, Ian C; Aratyn-Schaus, Yvonne; Waterman, Clare MAnnual review of cell and developmental biology2010315-3319575647
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Point process time-frequency analysis of respiratory sinus arrhythmia under altered respiration dynamics.Kodituwakku, Sandun; Lazar, Sara W; Indic, Premananda; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20101622-521096135
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Psychophysiological signals associated with affective states.Mauri, Maurizio; Magagnin, Valentina; Cipresso, Pietro; Mainardi, Luca; Brown, Emery N; Cerutti, Sergio; Villamira, Marco; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20103563-621096828
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Association of the small GTPase Rheb with the NMDA receptor subunit NR3A.Sucher, Nikolaus J; Yu, Eric; Chan, Shing Fai; Miri, Mitra; Lee, Benjamin J; Xiao, Bo; Worley, Paul F; Jensen, Frances ENeuro-Signals2010203-921135540
Preparation of complaint matrices for quantifying cellular contraction.Aratyn-Schaus, Yvonne; Oakes, Patrick W; Stricker, Jonathan; Winter, Stephen P; Gardel, Margaret LJournal of visualized experiments : JoVE201021178972
CXCR6, a newly defined biomarker of tissue-specific stem cell asymmetric self-renewal, identifies more aggressive human melanoma cancer stem cells.Taghizadeh, Rouzbeh; Noh, Minsoo; Huh, Yang Hoon; Ciusani, Emilio; Sigalotti, Luca; Maio, Michele; Arosio, Beatrice; Nicotra, Maria R; Natali, PierGiorgio; Sherley, James L; La Porta, Caterina A MPloS one2010e1518321203549
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Fungal regulatory evolution: cis and trans in the balance.Thompson, Dawn Anne; Regev, AvivFEBS letters2009 Dec 173959-6519914250
Growth landscape formed by perception and import of glucose in yeast.Youk, Hyun; van Oudenaarden, AlexanderNature2009 Dec 17875-920016593
Metal-polymer hybrid colloidal particles with an eccentric structure.Ohnuma, Akira; Cho, Eun Chul; Jiang, Majiong; Ohtani, Bunsho; Xia, YounanLangmuir : the ACS journal of surfaces and colloids2009 Dec 1513880-719621917
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Revealing global regulatory perturbations across human cancers.Goodarzi, Hani; Elemento, Olivier; Tavazoie, SaeedMolecular cell2009 Dec 11900-1120005852
Plant science. DNA binding made easy.Voytas, Daniel F; Joung, J KeithScience (New York, N.Y.)2009 Dec 111491-220007890
Clonal expansions in ulcerative colitis identify patients with neoplasia.Salk, Jesse J; Salipante, Stephen J; Risques, Rosa Ana; Crispin, David A; Li, Lin; Bronner, Mary P; Brentnall, Teresa A; Rabinovitch, Peter S; Horwitz, Marshall S; Loeb, Lawrence AProceedings of the National Academy of Sciences of the United States of America2009 Dec 820871-619926851
Facile synthesis of gold icosahedra in an aqueous solution by reacting HAuCl(4) with N-vinyl pyrrolidone.Yavuz, Mustafa S; Li, Weiyang; Xia, YounanChemistry (Weinheim an der Bergstrasse, Germany)2009 Dec 713181-719876970
Altered development of glutamatergic synapses in layer V pyramidal neurons in NR3A knockout mice.Zhou, Chengwen; Jensen, Frances E; Sucher, Nikolaus JMolecular and cellular neurosciences2009 Dec419-2619782137
From elements to modules: regulatory evolution in Ascomycota fungi.Wohlbach, Dana J; Thompson, Dawn Anne; Gasch, Audrey P; Regev, AvivCurrent opinion in genetics & development2009 Dec571-819879128
Gold nanocages covered by smart polymers for controlled release with near-infrared light.Yavuz, Mustafa S; Cheng, Yiyun; Chen, Jingyi; Cobley, Claire M; Zhang, Qiang; Rycenga, Matthew; Xie, Jingwei; Kim, Chulhong; Song, Kwang H; Schwartz, Andrea G; Wang, Lihong V; Xia, YounanNature materials2009 Dec935-919881498
Single-crystalline kinked semiconductor nanowire superstructures.Tian, Bozhi; Xie, Ping; Kempa, Thomas J; Bell, David C; Lieber, Charles MNature nanotechnology2009 Dec824-919893521
Caenorhabditis elegans: a model system for systems neuroscience.Sengupta, Piali; Samuel, Aravinthan D TCurrent opinion in neurobiology2009 Dec637-4319896359
Synthetic biology: understanding biological design from synthetic circuits.Mukherji, Shankar; van Oudenaarden, AlexanderNature reviews. Genetics2009 Dec859-7119898500
Neonatal seizures: an update on mechanisms and management.Jensen, Frances EClinics in perinatology2009 Dec881-900, vii19944840
Next-generation synthetic gene networks.Lu, Timothy K; Khalil, Ahmad S; Collins, James JNature biotechnology2009 Dec1139-5020010597
Structural analysis of semi-specific oligosaccharide recognition by a cellulose-binding protein of thermotoga maritima reveals adaptations for functional diversification of the oligopeptide periplasmic binding protein fold.Cuneo, Matthew J; Beese, Lorena S; Hellinga, Homme WThe Journal of biological chemistry2009 Nov 2733217-2319801540
Isolation of antagonists of antigen-specific autoimmune T cell proliferation.Gocke, Anne R; Udugamasooriya, D Gomika; Archer, Chase T; Lee, Jiyong; Kodadek, ThomasChemistry & biology2009 Nov 251133-919942136
Identification and characterization of a small molecule inhibitor of formin-mediated actin assembly.Rizvi, Syed A; Neidt, Erin M; Cui, Jiayue; Feiger, Zach; Skau, Colleen T; Gardel, Margaret L; Kozmin, Sergey A; Kovar, David RChemistry & biology2009 Nov 251158-6819942139
The many faces of repolarization instability: which one is prognostic?Shusterman, Vladimir; Lampert, Rachel; London, BarryJournal of electrocardiology2009 Nov-Dec511-619717165
Regulating immune response using polyvalent nucleic acid-gold nanoparticle conjugates.Massich, Matthew D; Giljohann, David A; Seferos, Dwight S; Ludlow, Louise E; Horvath, Curt M; Mirkin, Chad AMolecular pharmaceutics2009 Nov-Dec1934-4019810673
Complementary electrical and spectroscopic detection assays with on-wire-lithography-based nanostructures.Zheng, Gengfeng; Chen, Xiaodong; Mirkin, Chad ASmall (Weinheim an der Bergstrasse, Germany)2009 Nov2537-4019697306
SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas.Bass, Adam J; Watanabe, Hideo; Mermel, Craig H; Yu, Soyoung; Perner, Sven; Verhaak, Roel G; Kim, So Young; Wardwell, Leslie; Tamayo, Pablo; Gat-Viks, Irit; Ramos, Alex H; Woo, Michele S; Weir, Barbara A; Getz, Gad; Beroukhim, Rameen; O'Kelly, Michael; DutNature genetics2009 Nov1238-4219801978
Post-reductionist protein science, or putting Humpty Dumpty back together again.Gierasch, Lila M; Gershenson, AnneNature chemical biology2009 Nov774-719841622
Measuring the surface-enhanced Raman scattering enhancement factors of hot spots formed between an individual Ag nanowire and a single Ag nanocube.Camargo, Pedro H C; Cobley, Claire M; Rycenga, Matthew; Xia, YounanNanotechnology2009 Oct 2843402019801754
A Bayesian statistical analysis of behavioral facilitation associated with deep brain stimulation.Smith, Anne C; Shah, Sudhin A; Hudson, Andrew E; Purpura, Keith P; Victor, Jonathan D; Brown, Emery N; Schiff, Nicholas DJournal of neuroscience methods2009 Oct 15267-7619576932
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses.Amit, Ido; Garber, Manuel; Chevrier, Nicolas; Leite, Ana Paula; Donner, Yoni; Eisenhaure, Thomas; Guttman, Mitchell; Grenier, Jennifer K; Li, Weibo; Zuk, Or; Schubert, Lisa A; Birditt, Brian; Shay, Tal; Goren, Alon; Zhang, Xiaolan; Smith, Zachary; DeeringScience (New York, N.Y.)2009 Oct 9257-6319729616
Translational and rotational diffusion of a small globular protein under crowded conditions.Li, Conggang; Wang, Yaqiang; Pielak, Gary JThe journal of physical chemistry. B2009 Oct 813390-219791823
Affective learning enhances activity and functional connectivity in early visual cortex.Damaraju, Eswar; Huang, Yang-Ming; Barrett, Lisa Feldman; Pessoa, LuizNeuropsychologia2009 Oct2480-719410587
Role of reactive oxygen species in antibiotic action and resistance.Dwyer, Daniel J; Kohanski, Michael A; Collins, James JCurrent opinion in microbiology2009 Oct482-919647477
Diagnostic change and the increased prevalence of autism.King, Marissa; Bearman, PeterInternational journal of epidemiology2009 Oct1224-3419737791
The importance of being earnestly selfish.Cheroutre, Hilde; Mucida, Daniel; Lambolez, FlorenceNature immunology2009 Oct1047-919767722
She's emotional. He's having a bad day: attributional explanations for emotion stereotypes.Barrett, Lisa Feldman; Bliss-Moreau, ElizaEmotion (Washington, D.C.)2009 Oct649-5819803587
Fabrication of Microbeads with a Controllable Hollow Interior and Porous Wall Using a Capillary Fluidic Device.Choi, Sung-Wook; Zhang, Yu; Xia, YounanAdvanced functional materials2009 Sep 232943-294920191106
A SERS study of the molecular structure of alkanethiol monolayers on Ag nanocubes in the presence of aqueous glucose.Rycenga, Matthew; McLellan, Joseph M; Xia, YounanChemical physics letters2009 Sep 22166-17120160847
19F NMR studies of alpha-synuclein conformation and fibrillation.Li, Conggang; Lutz, Evan A; Slade, Kristin M; Ruf, Rebecca A S; Wang, Gui-Fang; Pielak, Gary JBiochemistry2009 Sep 158578-8419655784
Endogenous nitric oxide protects bacteria against a wide spectrum of antibiotics.Gusarov, Ivan; Shatalin, Konstantin; Starodubtseva, Marina; Nudler, EvgenyScience (New York, N.Y.)2009 Sep 111380-419745150
STIM1 and calmodulin interact with Orai1 to induce Ca2+-dependent inactivation of CRAC channels.Mullins, Franklin M; Park, Chan Young; Dolmetsch, Ricardo E; Lewis, Richard SProceedings of the National Academy of Sciences of the United States of America2009 Sep 815495-50019706428
Water-soluble macrocycles synthesized via the weak-link approach.Wiester, Michael J; Mirkin, Chad AInorganic chemistry2009 Sep 78054-619637852
Estimated autism risk and older reproductive age.King, Marissa D; Fountain, Christine; Dakhlallah, Diana; Bearman, Peter SAmerican journal of public health2009 Sep1673-919608957
Aptamer nano-flares for molecular detection in living cells.Zheng, Dan; Seferos, Dwight S; Giljohann, David A; Patel, Pinal C; Mirkin, Chad ANano letters2009 Sep3258-6119645478
Single-molecule sequencing of an individual human genome.Pushkarev, Dmitry; Neff, Norma F; Quake, Stephen RNature biotechnology2009 Sep847-5019668243
Hematopoietic development from human induced pluripotent stem cells.Lengerke, Claudia; Grauer, Matthias; Niebuhr, Nina I; Riedt, Tamara; Kanz, Lothar; Park, In-Hyun; Daley, George QAnnals of the New York Academy of Sciences2009 Sep219-2719796250
Production of Ag nanocubes on a scale of 0.1 g per batch by protecting the NaHS-mediated polyol synthesis with argon.Zhang, Qiang; Cobley, Claire; Au, Leslie; McKiernan, Maureen; Schwartz, Andrea; Wen, Long-Ping; Chen, Jingyi; Xia, YounanACS applied materials & interfaces2009 Sep2044-820305725
Generating coherent patterns of activity from chaotic neural networks.Sussillo, David; Abbott, L FNeuron2009 Aug 27544-5719709635
Nano-flares for mRNA regulation and detection.Prigodich, Andrew E; Seferos, Dwight S; Massich, Matthew D; Giljohann, David A; Lane, Brandon C; Mirkin, Chad AACS nano2009 Aug 252147-5219702321
SlipChip.Du, Wenbin; Li, Liang; Nichols, Kevin P; Ismagilov, Rustem FLab on a chip2009 Aug 212286-9219636458
A role for Lin28 in primordial germ-cell development and germ-cell malignancy.West, Jason A; Viswanathan, Srinivas R; Yabuuchi, Akiko; Cunniff, Kerianne; Takeuchi, Ayumu; Park, In-Hyun; Sero, Julia E; Zhu, Hao; Perez-Atayde, Antonio; Frazier, A Lindsay; Surani, M Azim; Daley, George QNature2009 Aug 13909-1319578360
Morphology and interaction between lipid domains.Ursell, Tristan S; Klug, William S; Phillips, RobProceedings of the National Academy of Sciences of the United States of America2009 Aug 1113301-619620730
Isolation, incubation, and parallel functional testing and identification by FISH of rare microbial single-copy cells from multi-species mixtures using the combination of chemistrode and stochastic confinement.Liu, Weishan; Kim, Hyun Jung; Lucchetta, Elena M; Du, Wenbin; Ismagilov, Rustem FLab on a chip2009 Aug 72153-6219606291
Modelling to contain pandemics.Epstein, Joshua MNature2009 Aug 668719661897
Colloidal hollow spheres of conducting polymers with smooth surface and uniform, controllable sizes.Bai, Meng-Yi; Cheng, Ya-Jian; Wickline, Samuel A; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2009 Aug 31747-5219384880
Global discovery of adaptive mutations.Goodarzi, Hani; Hottes, Alison K; Tavazoie, SaeedNature methods2009 Aug581-319597501
Protein occupancy landscape of a bacterial genome.Vora, Tiffany; Hottes, Alison K; Tavazoie, SaeedMolecular cell2009 Jul 31247-5319647521
Trajectory approach to two-state kinetics of single particles on sculpted energy landscapes.Wu, David; Ghosh, Kingshuk; Inamdar, Mandar; Lee, Heun Jin; Fraser, Scott; Dill, Ken; Phillips, RobPhysical review letters2009 Jul 3105060319792475
Probing the surface-enhanced Raman scattering properties of Au-Ag nanocages at two different excitation wavelengths.Rycenga, Matthew; Hou, Kirk K; Cobley, Claire M; Schwartz, Andrea G; Camargo, Pedro H C; Xia, YounanPhysical chemistry chemical physics : PCCP2009 Jul 285903-819588011
Transcriptional regulatory circuits: predicting numbers from alphabets.Kim, Harold D; Shay, Tal; O'Shea, Erin K; Regev, AvivScience (New York, N.Y.)2009 Jul 24429-3219628860
Conductive Core-Sheath Nanofibers and Their Potential Application in Neural Tissue Engineering.Xie, Jingwei; Macewan, Matthew R; Willerth, Stephanie M; Li, Xiaoran; Moran, Daniel W; Sakiyama-Elbert, Shelly E; Xia, YounanAdvanced functional materials2009 Jul 242312-231819830261
Carborane-based pincers: synthesis and structure of SeBSe and SBS Pd(II) complexes.Spokoyny, Alexander M; Reuter, Matthew G; Stern, Charlotte L; Ratner, Mark A; Seideman, Tamar; Mirkin, Chad AJournal of the American Chemical Society2009 Jul 159482-319583431
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.Khalil, Ahmad M; Guttman, Mitchell; Huarte, Maite; Garber, Manuel; Raj, Arjun; Rivea Morales, Dianali; Thomas, Kelly; Presser, Aviva; Bernstein, Bradley E; van Oudenaarden, Alexander; Regev, Aviv; Lander, Eric S; Rinn, John LProceedings of the National Academy of Sciences of the United States of America2009 Jul 1411667-7219571010
Plasmonically controlled nucleic acid dehybridization with gold nanoprisms.Jones, Matthew R; Millstone, Jill E; Giljohann, David A; Seferos, Dwight S; Young, Kaylie L; Mirkin, Chad AChemphyschem : a European journal of chemical physics and physical chemistry2009 Jul 131461-519431161
Probing dynein and kinesin stepping with mechanical manipulation in a living cell.Sims, Peter A; Xie, X SunneyChemphyschem : a European journal of chemical physics and physical chemistry2009 Jul 131511-619504528
Bone-marrow adipocytes as negative regulators of the haematopoietic microenvironment.Naveiras, Olaia; Nardi, Valentina; Wenzel, Pamela L; Hauschka, Peter V; Fahey, Frederic; Daley, George QNature2009 Jul 9259-6319516257
In vivo profiles in malaria are consistent with a novel physiological state.Wirth, Dyann; Daily, Johanna; Winzeler, Elizabeth; Mesirov, Jill P; Regev, AvivProceedings of the National Academy of Sciences of the United States of America2009 Jul 7E70; author reply E71-219570993
Gene targeting of a disease-related gene in human induced pluripotent stem and embryonic stem cells.Zou, Jizhong; Maeder, Morgan L; Mali, Prashant; Pruett-Miller, Shondra M; Thibodeau-Beganny, Stacey; Chou, Bin-Kuan; Chen, Guibin; Ye, Zhaohui; Park, In-Hyun; Daley, George Q; Porteus, Matthew H; Joung, J Keith; Cheng, LinzhaoCell stem cell2009 Jul 297-11019540188
The Future of Psychology: Connecting Mind to Brain.Barrett, Lisa FeldmanPerspectives on psychological science : a journal of the Association for Psychological Science2009 Jul 1326-33919844601
Assessment of autonomic control and respiratory sinus arrhythmia using point process models of human heart beat dynamics.Chen, Zhe; Brown, Emery N; Barbieri, RiccardoIEEE transactions on bio-medical engineering2009 Jul1791-80219272971
Discrete- and continuous-time probabilistic models and algorithms for inferring neuronal UP and DOWN states.Chen, Zhe; Vijayan, Sujith; Barbieri, Riccardo; Wilson, Matthew A; Brown, Emery NNeural computation2009 Jul1797-86219323637
Persistent systemic inflammation and atypical enterocolitis in patients with NEMO syndrome.Cheng, Laurence E; Kanwar, Bittoo; Tcheurekdjian, Haig; Grenert, James P; Muskat, Mica; Heyman, Melvin B; McCune, Joseph M; Wara, Diane WClinical immunology (Orlando, Fla.)2009 Jul124-3119375390
In-wire conversion of a metal nanorod segment into an organic semiconductor.Chen, Xiaodong; Zheng, Gengfeng; Cutler, Joshua I; Jang, Jae-Won; Mirkin, Chad ASmall (Weinheim an der Bergstrasse, Germany)2009 Jul1527-3019387988
Lin28 promotes transformation and is associated with advanced human malignancies.Viswanathan, Srinivas R; Powers, John T; Einhorn, William; Hoshida, Yujin; Ng, Tony L; Toffanin, Sara; O'Sullivan, Maureen; Lu, Jun; Phillips, Letha A; Lockhart, Victoria L; Shah, Samar P; Tanwar, Pradeep S; Mermel, Craig H; Beroukhim, Rameen; Azam, MohamNature genetics2009 Jul843-819483683
Nanofiber scaffolds with gradations in mineral content for mimicking the tendon-to-bone insertion site.Li, Xiaoran; Xie, Jingwei; Lipner, Justin; Yuan, Xiaoyan; Thomopoulos, Stavros; Xia, YounanNano letters2009 Jul2763-819537737
Epileptogenesis in the immature brain: emerging mechanisms.Rakhade, Sanjay N; Jensen, Frances ENature reviews. Neurology2009 Jul380-9119578345
The molecular dating game: an antibody heavy chain hangs loose with a chaperone while waiting for its life partner.Hebert, Daniel N; Gierasch, Lila MMolecular cell2009 Jun 26635-619560414
Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment.Peterson, Eric L; Kondev, Jane; Theriot, Julie A; Phillips, RobBioinformatics (Oxford, England)2009 Jun 11356-6219351620
Valence focus and self-esteem lability: reacting to hedonic cues in the social environment.Pietromonaco, Paula R; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2009 Jun406-1819485618
Structural adaptations that modulate monosaccharide, disaccharide, and trisaccharide specificities in periplasmic maltose-binding proteins.Cuneo, Matthew J; Changela, Anita; Beese, Lorena S; Hellinga, Homme WJournal of molecular biology2009 May 29157-6619361522
Synthetic gene networks that count.Friedland, Ari E; Lu, Timothy K; Wang, Xiao; Shi, David; Church, George; Collins, James JScience (New York, N.Y.)2009 May 291199-20219478183
Measuring the Optical Absorption Cross Sections of Au-Ag Nanocages and Au Nanorods by Photoacoustic Imaging.Cho, Eun Chul; Kim, Chulhong; Zhou, Fei; Cobley, Claire M; Song, Kwang Hyun; Chen, Jingyi; Li, Zhi-Yuhan; Wang, Lihong V; Xia, YounanThe journal of physical chemistry. C, Nanomaterials and interfaces2009 May 289023-902819680423
Neurite outgrowth on nanofiber scaffolds with different orders, structures, and surface properties.Xie, Jingwei; MacEwan, Matthew R; Li, Xiaoran; Sakiyama-Elbert, Shelly E; Xia, YounanACS nano2009 May 261151-919397333
High-frequency modification of plant genes using engineered zinc-finger nucleases.Townsend, Jeffrey A; Wright, David A; Winfrey, Ronnie J; Fu, Fengli; Maeder, Morgan L; Joung, J Keith; Voytas, Daniel FNature2009 May 21442-519404258
Automated microfluidic chromatin immunoprecipitation from 2,000 cells.Wu, Angela R; Hiatt, Joseph B; Lu, Rong; Attema, Joanne L; Lobo, Neethan A; Weissman, Irving L; Clarke, Michael F; Quake, Stephen RLab on a chip2009 May 211365-7019417902
Emerging roles for lipids in shaping membrane-protein function.Phillips, Rob; Ursell, Tristan; Wiggins, Paul; Sens, PierreNature2009 May 21379-8519458714
See it with feeling: affective predictions during object perception.Barrett, L F; Bar, MoshePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2009 May 121325-3419528014
High-throughput sequencing of the zebrafish antibody repertoire.Weinstein, Joshua A; Jiang, Ning; White 3rd, Richard A; Fisher, Daniel S; Quake, Stephen RScience (New York, N.Y.)2009 May 8807-1019423829
Transcriptome transfer produces a predictable cellular phenotype.Sul, Jai-Yoon; Wu, Chia-wen K; Zeng, Fanyi; Jochems, Jeanine; Lee, Miler T; Kim, Tae Kyung; Peritz, Tiina; Buckley, Peter; Cappelleri, David J; Maronski, Margaret; Kim, Minsun; Kumar, Vijay; Meaney, David; Kim, Junhyong; Eberwine, JamesProceedings of the National Academy of Sciences of the United States of America2009 May 57624-919380745
Experience Sampling Methods: A Modern Idiographic Approach to Personality Research.Conner, Tamlin S; Tennen, Howard; Fleeson, William; Barrett, Lisa FeldmanSocial and personality psychology compass2009 May 1292-31319898679
HCN hyperpolarization-activated cation channels inhibit EPSPs by interactions with M-type K(+) channels.George, Meena S; Abbott, L F; Siegelbaum, Steven ANature neuroscience2009 May577-8419363490
Diversity-based, model-guided construction of synthetic gene networks with predicted functions.Ellis, Tom; Wang, Xiao; Collins, James JNature biotechnology2009 May465-7119377462
Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli.Amini, Sasan; Goodarzi, Hani; Tavazoie, SaeedPLoS pathogens2009 Maye100043219436718
Selective toxin sequestrants for the treatment of bacterial infections.Simpson, Levi S; Burdine, Lyle; Dutta, Amal K; Feranchak, Andrew P; Kodadek, ThomasJournal of the American Chemical Society2009 Apr 295760-219351156
Surface-enhanced Raman scattering: comparison of three different molecules on single-crystal nanocubes and nanospheres of silver.Rycenga, Matthew; Kim, Moon Ho; Camargo, Pedro H C; Cobley, Claire; Li, Zhi-Yuan; Xia, YounanThe journal of physical chemistry. A2009 Apr 233932-919175302
Optical properties of anisotropic core-shell pyramidal particles.Sweeney, Christina M; Hasan, Warefta; Nehl, Colleen L; Odom, Teri WThe journal of physical chemistry. A2009 Apr 234265-819290590
Chitosan-Based Inverse Opals: Three-Dimensional Scaffolds with Uniform Pore Structures for Cell Culture.Choi, Sung-Wook; Xie, Jingwei; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2009 Apr 152997-300119710950
Sending signals dynamically.Smock, Robert G; Gierasch, Lila MScience (New York, N.Y.)2009 Apr 10198-20319359576
Quantifying green fluorescent protein diffusion in Escherichia coli by using continuous photobleaching with evanescent illumination.Slade, Kristin M; Steele, Bridgett L; Pielak, Gary J; Thompson, Nancy LThe journal of physical chemistry. B2009 Apr 94837-4519296673
Preparation of uniform microspheres using a simple fluidic device and their crystallization into close-packed lattices.Choi, Sung-Wook; Cheong, In Woo; Kim, Jung-Hyun; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2009 Apr454-919189332
Tailoring the structure of nanopyramids for optimal heat generation.Hasan, Warefta; Stender, Christopher L; Lee, Min Hyung; Nehl, Colleen L; Lee, JeunghoonNano letters2009 Apr1555-819271715
Proteoglycan interactions with Sonic Hedgehog specify mitogenic responses.Chan, Jennifer A; Balasubramanian, Srividya; Witt, Rochelle M; Nazemi, Kellie J; Choi, Yoojin; Pazyra-Murphy, Maria F; Walsh, Carolyn O; Thompson, Margaret; Segal, Rosalind ANature neuroscience2009 Apr409-1719287388
From brain formation to plasticity: insights on Otx2 homeoprotein.Sugiyama, Sayaka; Prochiantz, Alain; Hensch, Takao KDevelopment, growth & differentiation2009 Apr369-7719298552
Gating multiple signals through detailed balance of excitation and inhibition in spiking networks.Vogels, Tim P; Abbott, L FNature neuroscience2009 Apr483-9119305402
Trial outcome and associative learning signals in the monkey hippocampus.Wirth, Sylvia; Avsar, Emin; Chiu, Cindy C; Sharma, Varun; Smith, Anne C; Brown, Emery; Suzuki, Wendy ANeuron2009 Mar 26930-4019324001
Suberoylanilide hydroxamic acid reactivates HIV from latently infected cells.Contreras, Xavier; Schweneker, Marc; Chen, Ching-Shih; McCune, Joseph M; Deeks, Steven G; Martin, Jeffrey; Peterlin, B MatijaThe Journal of biological chemistry2009 Mar 136782-919136668
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.Guttman, Mitchell; Amit, Ido; Garber, Manuel; French, Courtney; Lin, Michael F; Feldser, David; Huarte, Maite; Zuk, Or; Carey, Bryce W; Cassady, John P; Cabili, Moran N; Jaenisch, Rudolf; Mikkelsen, Tarjei S; Jacks, Tyler; Hacohen, Nir; Bernstein, BradleyNature2009 Mar 12223-719182780
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing.Yassour, Moran; Kaplan, Tommy; Fraser, Hunter B; Levin, Joshua Z; Pfiffner, Jenna; Adiconis, Xian; Schroth, Gary; Luo, Shujun; Khrebtukova, Irina; Gnirke, Andreas; Nusbaum, Chad; Thompson, Dawn-Anne; Friedman, Nir; Regev, AvivProceedings of the National Academy of Sciences of the United States of America2009 Mar 33264-919208812
Gag p27-specific B- and T-cell responses in Simian immunodeficiency virus SIVagm-infected African green monkeys.Lozano Reina, Jose-Manuel; Favre, David; Kasakow, Zeljka; Mayau, Veronique; Nugeyre, Marie-Therese; Ka, Thierno; Faye, Abdourahmane; Miller, Christopher J; Scott-Algara, Daniel; McCune, Joseph M; Barre-Sinoussi, Francoise; Diop, Ousmane M; Muller-Trutwin,Journal of virology2009 Mar2770-719109377
Simultaneous electroencephalography and functional magnetic resonance imaging of general anesthesia.Purdon, Patrick L; Pierce, Eric T; Bonmassar, Giorgio; Walsh, John; Harrell, P Grace; Kwo, Jean; Deschler, Daniel; Barlow, Margaret; Merhar, Rebecca C; Lamus, Camilo; Mullaly, Catherine M; Sullivan, Mary; Maginnis, Sharon; Skoniecki, Debra; Higgins, HelenAnnals of the New York Academy of Sciences2009 Mar61-7019351356
The role radius of curvature plays in thiolated oligonucleotide loading on gold nanoparticles.Hill, Haley D; Millstone, Jill E; Banholzer, Matthew J; Mirkin, Chad AACS nano2009 Feb 24418-2419236080
Gene regulation with polyvalent siRNA-nanoparticle conjugates.Giljohann, David A; Seferos, Dwight S; Prigodich, Andrew E; Patel, Pinal C; Mirkin, Chad AJournal of the American Chemical Society2009 Feb 182072-319170493
Biochemistry on a leash: the roles of tether length and geometry in signal integration proteins.Van Valen, David; Haataja, Mikko; Phillips, RobBiophysical journal2009 Feb 181275-9219217847
Tuning the Thickness and Orientation of Single Au Pyramids for Improved Refractive Index Sensitivities.Lee, Jeunghoon; Hasan, Warefta; Odom, Teri WThe journal of physical chemistry. C, Nanomaterials and interfaces2009 Feb 122205-220720157343
Local cortical tension by myosin II guides 3D endothelial cell branching.Fischer, Robert S; Gardel, Margaret; Ma, Xuefei; Adelstein, Robert S; Waterman, Clare MCurrent biology : CB2009 Feb 10260-519185493
Templated spherical high density lipoprotein nanoparticles.Thaxton, C Shad; Daniel, Weston L; Giljohann, David A; Thomas, Audrey D; Mirkin, Chad AJournal of the American Chemical Society2009 Feb 41384-519133723
Using NMR to distinguish viscosity effects from nonspecific protein binding under crowded conditions.Li, Conggang; Pielak, Gary JJournal of the American Chemical Society2009 Feb 41368-919140727
A facile synthesis of asymmetric hybrid colloidal particles.Ohnuma, Akira; Cho, Eun Chul; Camargo, Pedro H C; Au, Leslie; Ohtani, Bunsho; Xia, YounanJournal of the American Chemical Society2009 Feb 41352-319140763
An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins.Sander, Jeffry D; Zaback, Peter; Joung, J Keith; Voytas, Daniel F; Dobbs, DrenaNucleic acids research2009 Feb506-1519056825
Electrical recording from hearts with flexible nanowire device arrays.Timko, Brian P; Cohen-Karni, Tzahi; Yu, Guihua; Qing, Quan; Tian, Bozhi; Lieber, Charles MNano letters2009 Feb914-819170614
Transcriptional profiling in pathogenic and non-pathogenic SIV infections reveals significant distinctions in kinetics and tissue compartmentalization.Lederer, Sharon; Favre, David; Walters, Kathie-Anne; Proll, Sean; Kanwar, Bittoo; Kasakow, Zeljka; Baskin, Carole R; Palermo, Robert; McCune, Joseph M; Katze, Michael GPLoS pathogens2009 Febe100029619214219
Critical loss of the balance between Th17 and T regulatory cell populations in pathogenic SIV infection.Favre, David; Lederer, Sharon; Kanwar, Bittoo; Ma, Zhong-Min; Proll, Sean; Kasakow, Zeljka; Mold, Jeff; Swainson, Louise; Barbour, Jason D; Baskin, Carole R; Palermo, Robert; Pandrea, Ivona; Miller, Christopher J; Katze, Michael G; McCune, Joseph MPLoS pathogens2009 Febe100029519214220
Chemically specific imaging of cryptosporidium oocysts using coherent anti-Stokes Raman scattering (CARS) microscopy.Murugkar, S; Evans, C L; Xie, X S; Anis, HJournal of microscopy2009 Feb244-5019220690
Redox-activating dip-pen nanolithography (RA-DPN).Braunschweig, Adam B; Senesi, Andrew J; Mirkin, Chad AJournal of the American Chemical Society2009 Jan 28922-319128060
A network biology approach to aging in yeast.Lorenz, David R; Cantor, Charles R; Collins, James JProceedings of the National Academy of Sciences of the United States of America2009 Jan 271145-5019164565
Protein nuclear magnetic resonance under physiological conditions.Pielak, Gary J; Li, Conggang; Miklos, Andrew C; Schlesinger, Alexander P; Slade, Kristin M; Wang, Gui-Fang; Zigoneanu, Imola GBiochemistry2009 Jan 20226-3419113834
Fine tuning the optical properties of Au-Ag nanocages by selectively etching Ag with oxygen and a water-soluble thiol.Cho, Eun Chul; Cobley, Claire M; Rycenga, Matthew; Xia, YounanJournal of materials chemistry2009 Jan 16317-632019829745
Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays.Fu, Fengli; Sander, Jeffry D; Maeder, Morgan; Thibodeau-Beganny, Stacey; Joung, J Keith; Dobbs, Drena; Miller, Leslie; Voytas, Daniel FNucleic acids research2009 JanD279-8318812396
The differentiation of embryonic stem cells seeded on electrospun nanofibers into neural lineages.Xie, Jingwei; Willerth, Stephanie M; Li, Xiaoran; Macewan, Matthew R; Rader, Allison; Sakiyama-Elbert, Shelly E; Xia, YounanBiomaterials2009 Jan354-6218930315
Troger's-base-derived infinite co-ordination polymer microparticles.Jeon, You-Moon; Armatas, Gerasimos S; Kim, Dongwoo; Kanatzidis, Mercouri G; Mirkin, Chad ASmall (Weinheim an der Bergstrasse, Germany)2009 Jan46-5019058289
Curvature-induced base pair "slipping" effects in DNA-nanoparticle hybridization.Hill, Haley D; Hurst, Sarah J; Mirkin, Chad ANano letters2009 Jan317-2119072317
An in vitro microfluidic approach to generating protein-interaction networks.Gerber, Doron; Maerkl, Sebastian J; Quake, Stephen RNature methods2009 Jan71-419098921
Polyvalent DNA nanoparticle conjugates stabilize nucleic acids.Seferos, Dwight S; Prigodich, Andrew E; Giljohann, David A; Patel, Pinal C; Mirkin, Chad ANano letters2009 Jan308-1119099465
Dimers of silver nanospheres: facile synthesis and their use as hot spots for surface-enhanced Raman scattering.Li, Weiyang; Camargo, Pedro H C; Lu, Xianmao; Xia, YounanNano letters2009 Jan485-9019143509
Shape-controlled synthesis of metal nanocrystals: simple chemistry meets complex physics?Xia, Younan; Xiong, Yujie; Lim, Byungkwon; Skrabalak, Sara EAngewandte Chemie (International ed. in English)200960-10319053095
Plug-based microfluidics with defined surface chemistry to miniaturize and control aggregation of amyloidogenic peptides.Meier, Matthias; Kennedy-Darling, Julia; Choi, Se Hoon; Norstrom, Eric M; Sisodia, Sangram S; Ismagilov, Rustem FAngewandte Chemie (International ed. in English)20091487-919152390
A method for direct measurement of protein stability in vivo.Ignatova, Zoya; Gierasch, Lila MMethods in molecular biology (Clifton, N.J.)2009165-7819157083
Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN).Foley, Jonathan E; Yeh, Jing-Ruey J; Maeder, Morgan L; Reyon, Deepak; Sander, Jeffry D; Peterson, Randall T; Joung, J KeithPloS one2009e434819198653
Isolating and probing the hot spot formed between two silver nanocubes.Camargo, Pedro H C; Rycenga, Matthew; Au, Leslie; Xia, YounanAngewandte Chemie (International ed. in English)20092180-419199309
Olfactory behavioral testing in the adult mouse.Witt, Rochelle M; Galligan, Meghan M; Despinoy, Jennifer R; Segal, RosalindJournal of visualized experiments : JoVE200919229182
Surprisingly long-range surface-enhanced Raman scattering (SERS) on Au-Ni multisegmented nanowires.Wei, Wei; Li, Shuzhou; Millstone, Jill E; Banholzer, Matthew J; Chen, Xiaodong; Xu, Xiaoyang; Schatz, George C; Mirkin, Chad AAngewandte Chemie (International ed. in English)20094210-219431164
On-wire lithography: synthesis, encoding and biological applications.Banholzer, Matthew J; Qin, Lidong; Millstone, Jill E; Osberg, Kyle D; Mirkin, Chad ANature protocols2009838-4819444241
BRNI: Modular analysis of transcriptional regulatory programs.Nachman, Iftach; Regev, AvivBMC bioinformatics200915519457258
Genetic architecture of intrinsic antibiotic susceptibility.Girgis, Hany S; Hottes, Alison K; Tavazoie, SaeedPloS one2009e562919462005
Concentration and length dependence of DNA looping in transcriptional regulation.Han, Lin; Garcia, Hernan G; Blumberg, Seth; Towles, Kevin B; Beausang, John F; Nelson, Philip C; Phillips, RobPloS one2009e562119479049
Etching and growth: an intertwined pathway to silver nanocrystals with exotic shapes.Cobley, Claire M; Rycenga, Matthew; Zhou, Fei; Li, Zhi-Yuan; Xia, YounanAngewandte Chemie (International ed. in English)20094824-719479923
Advances in light microscopy for neuroscience.Wilt, Brian A; Burns, Laurie D; Wei Ho, Eric Tatt; Ghosh, Kunal K; Mukamel, Eran A; Schnitzer, Mark JAnnual review of neuroscience2009435-50619555292
Microfluidic confinement of single cells of bacteria in small volumes initiates high-density behavior of quorum sensing and growth and reveals its variability.Boedicker, James Q; Vincent, Meghan E; Ismagilov, Rustem FAngewandte Chemie (International ed. in English)20095908-1119565587
First-principles calculation of DNA looping in tethered particle experiments.Towles, Kevin B; Beausang, John F; Garcia, Hernan G; Phillips, Rob; Nelson, Philip CPhysical biology200902500119571369
Understanding the Mind by Measuring the Brain: Lessons From Measuring Behavior (Commentary on Vul et al., 2009).Barrett, Lisa FeldmanPerspectives on psychological science : a journal of the Association for Psychological Science2009314-31819672318
Multiplexed protein arrays enabled by polymer pen lithography: addressing the inking challenge.Zheng, Zijian; Daniel, Weston L; Giam, Louise R; Huo, Fengwei; Senesi, Andrew J; Zheng, Gengfeng; Mirkin, Chad AAngewandte Chemie (International ed. in English)20097626-919731290
Plasmon-mediated synthesis of silver triangular bipyramids.Zhang, Jian; Li, Shuzhou; Wu, Jinsong; Schatz, George C; Mirkin, Chad AAngewandte Chemie (International ed. in English)20097787-9119760687
Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays.Maeder, Morgan L; Thibodeau-Beganny, Stacey; Sander, Jeffry D; Voytas, Daniel F; Joung, J KeithNature protocols20091471-50119798082
Using TIRF microscopy to quantify and confirm efficient mass transfer at the substrate surface of the chemistrode.Chen, Delai; Du, Wenbin; Ismagilov, Rustem FNew journal of physics20097501719809528
A probabilistic framework for learning robust common spatial patterns.Wu, Wei; Chen, Zhe; Gao, Shangkai; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20094658-6119963618
Linear and nonlinear quantification of respiratory sinus arrhythmia during propofol general anesthesia.Chen, Zhe; Purdon, Patrick L; Pierce, Eric T; Harrell, Grace; Walsh, John; Salazar, Andres F; Tavares, Casie L; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20095336-919963899
A statistical model for multiphoton calcium imaging of the brain.Malik, Wasim Q; Schummers, James; Sur, Mriganka; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20097002-519964727
A regularized point process generalized linear model for assessing the functional connectivity in the cat motor cortex.Chen, Zhe; Putrino, David F; Ba, Demba E; Ghosh, Soumya; Barbieri, Riccardo; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20095006-919965032
Targeted mutagenesis in zebrafish using customized zinc-finger nucleases.Foley, Jonathan E; Maeder, Morgan L; Pearlberg, Joseph; Joung, J Keith; Peterson, Randall T; Yeh, Jing-Ruey JNature protocols20091855-6720010934
Probing the photothermal effect of gold-based nanocages with surface-enhanced Raman scattering (SERS).Rycenga, Matthew; Wang, Zhipeng; Gordon, Eric; Cobley, Claire M; Schwartz, Andrea G; Lo, Cynthia S; Xia, YounanAngewandte Chemie (International ed. in English)20099924-720014343
Genetic structure in African populations: implications for human demographic history.Lambert, C A; Tishkoff, S ACold Spring Harbor symposia on quantitative biology2009395-40220453204
Networking opportunities for bacteria.Dwyer, Daniel J; Kohanski, Michael A; Collins, James JCell2008 Dec 261153-619109881
Alpha-Synuclein conformation affects its tyrosine-dependent oxidative aggregation.Ruf, Rebecca A S; Lutz, Evan A; Zigoneanu, Imola G; Pielak, Gary JBiochemistry2008 Dec 2313604-919049426
Label-free biomedical imaging with high sensitivity by stimulated Raman scattering microscopy.Freudiger, Christian W; Min, Wei; Saar, Brian G; Lu, Sijia; Holtom, Gary R; He, Chengwei; Tsai, Jason C; Kang, Jing X; Xie, X SunneyScience (New York, N.Y.)2008 Dec 191857-6119095943
Traction stress in focal adhesions correlates biphasically with actin retrograde flow speed.Gardel, Margaret L; Sabass, Benedikt; Ji, Lin; Danuser, Gaudenz; Schwarz, Ulrich S; Waterman, Clare MThe Journal of cell biology2008 Dec 15999-100519075110
Biophysics. Clutch dynamics.Aratyn-Schaus, Yvonne; Gardel, Margaret LScience (New York, N.Y.)2008 Dec 121646-719074337
Potential network mechanisms mediating electroencephalographic beta rhythm changes during propofol-induced paradoxical excitation.McCarthy, Michelle M; Brown, Emery N; Kopell, NancyThe Journal of neuroscience : the official journal of the Society for Neuroscience2008 Dec 1013488-50419074022
Homozygous missense N629D hERG (KCNH2) potassium channel mutation causes developmental defects in the right ventricle and its outflow tract and embryonic lethality.Teng, Guo Qi; Zhao, Xian; Lees-Miller, James P; Quinn, F Russell; Li, Pin; Rancourt, Derrick E; London, Barry; Cross, James C; Duff, Henry JCirculation research2008 Dec 51483-9118948620
Maternal alloantigens promote the development of tolerogenic fetal regulatory T cells in utero.Mold, Jeff E; Michaelsson, Jakob; Burt, Trevor D; Muench, Marcus O; Beckerman, Karen P; Busch, Michael P; Lee, Tzong-Hae; Nixon, Douglas F; McCune, Joseph MScience (New York, N.Y.)2008 Dec 51562-519056990
Synthesis and Optical Properties of Cubic Gold Nanoframes.Au, Leslie; Chen, Yeechi; Zhou, Fei; Camargo, Pedro H C; Lim, Byungkwon; Li, Zhi-Yuan; Ginger, David S; Xia, YounanNano research2008 Dec 1441-44920200595
Gold nanocages: synthesis, properties, and applications.Skrabalak, Sara E; Chen, Jingyi; Sun, Yugang; Lu, Xianmao; Au, Leslie; Cobley, Claire M; Xia, YounanAccounts of chemical research2008 Dec1587-9518570442
DNA-gold triangular nanoprism conjugates.Millstone, Jill E; Georganopoulou, Dimitra G; Xu, Xiaoyang; Wei, Wei; Li, Shuyou; Mirkin, Chad ASmall (Weinheim an der Bergstrasse, Germany)2008 Dec2176-8019016498
Spatial localization of bacteria controls coagulation of human blood by 'quorum acting'.Kastrup, Christian J; Boedicker, James Q; Pomerantsev, Andrei P; Moayeri, Mahtab; Bian, Yao; Pompano, Rebecca R; Kline, Timothy R; Sylvestre, Patricia; Shen, Feng; Leppla, Stephen H; Tang, Wei-Jen; Ismagilov, Rustem FNature chemical biology2008 Dec742-5019031531
Defined spatial structure stabilizes a synthetic multispecies bacterial community.Kim, Hyun Jung; Boedicker, James Q; Choi, Jang Wook; Ismagilov, Rustem FProceedings of the National Academy of Sciences of the United States of America2008 Nov 2518188-9319011107
Tim-3 expression defines a novel population of dysfunctional T cells with highly elevated frequencies in progressive HIV-1 infection.Jones, R Brad; Ndhlovu, Lishomwa C; Barbour, Jason D; Sheth, Prameet M; Jha, Aashish R; Long, Brian R; Wong, Jessica C; Satkunarajah, Malathy; Schweneker, Marc; Chapman, Joan M; Gyenes, Gabor; Vali, Bahareh; Hyrcza, Martin D; Yue, Feng Yun; Kovacs, Colin;The Journal of experimental medicine2008 Nov 242763-7919001139
Structural analysis of a periplasmic binding protein in the tripartite ATP-independent transporter family reveals a tetrameric assembly that may have a role in ligand transport.Cuneo, Matthew J; Changela, Anita; Miklos, Aleksandr E; Beese, Lorena S; Krueger, Joanna K; Hellinga, Homme WThe Journal of biological chemistry2008 Nov 2132812-2018723845
Putting Electrospun Nanofibers to Work for Biomedical Research.Xie, Jingwei; Li, Xiaoran; Xia, YounanMacromolecular rapid communications2008 Nov 191775-179220011452
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.Dethlefsen, Les; Huse, Sue; Sogin, Mitchell L; Relman, David APLoS biology2008 Nov 18e28019018661
The pharmacophore of a peptoid VEGF receptor 2 antagonist includes both side chain and main chain residues.Udugamasooriya, D Gomika; Dunham, Geoff; Ritchie, Caroline; Brekken, Rolf A; Kodadek, ThomasBioorganic & medicinal chemistry letters2008 Nov 155892-418653335
Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death.Kohanski, Michael A; Dwyer, Daniel J; Wierzbowski, Jamey; Cottarel, Guillaume; Collins, James JCell2008 Nov 14679-9019013277
The chemistrode: a droplet-based microfluidic device for stimulation and recording with high temporal, spatial, and chemical resolution.Chen, Delai; Du, Wenbin; Liu, Ying; Liu, Weishan; Kuznetsov, Andrey; Mendez, Felipe E; Philipson, Louis H; Ismagilov, Rustem FProceedings of the National Academy of Sciences of the United States of America2008 Nov 416843-818974218
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.Huse, Susan M; Dethlefsen, Les; Huber, Julie A; Mark Welch, David; Welch, David Mark; Relman, David A; Sogin, Mitchell LPLoS genetics2008 Nove100025519023400
Cross-strand split tetra-Cys motifs as structure sensors in a beta-sheet protein.Krishnan, Beena; Gierasch, Lila MChemistry & biology2008 Oct 201104-1518940670
A stochastic single-molecule event triggers phenotype switching of a bacterial cell.Choi, Paul J; Cai, Long; Frieda, Kirsten; Xie, X SunneyScience (New York, N.Y.)2008 Oct 17442-618927393
Surface plasmon-mediated energy transfer in heterogap Au-Ag nanowires.Wei, Wei; Li, Shuzhou; Qin, Lidong; Xue, Can; Millstone, Jill E; Xu, Xiaoyang; Schatz, George C; Mirkin, Chad ANano letters2008 Oct3446-918767888
Activation of tyrosine kinases by mutation of the gatekeeper threonine.Azam, Mohammad; Seeliger, Markus A; Gray, Nathanael S; Kuriyan, John; Daley, George QNature structural & molecular biology2008 Oct1109-1818794843
Membrane mechanics as a probe of ion-channel gating mechanisms.Reeves, Daniel; Ursell, Tristan; Sens, Pierre; Kondev, Jane; Phillips, RobPhysical review. E, Statistical, nonlinear, and soft matter physics2008 Oct04190118999449
'Til death do us part': coming to terms with symbiotic relationships. Forward.Relman, David ANature reviews. Microbiology2008 Oct721-419086265
Disease-specific induced pluripotent stem cells.Park, In-Hyun; Arora, Natasha; Huo, Hongguang; Maherali, Nimet; Ahfeldt, Tim; Shimamura, Akiko; Lensch, M William; Cowan, Chad; Hochedlinger, Konrad; Daley, George QCell2008 Sep 5877-8618691744
Quantification of the benefit from integrating MEG and EEG data in minimum l2-norm estimation.Molins, A; Stufflebeam, S M; Brown, E N; Hamalainen, M SNeuroImage2008 Sep 11069-7718602485
Pyrene-Appended Fluorescent Tweezers Generated via the Weak-Link Approach and Their Halide Recognition Properties.Jeon, You-Moon; Kim, Dongwoo; Mirkin, Chad A; Golen, James A; Rheingold, Arnold LTetrahedron2008 Sep 18428-843422180669
Discovery of a hepatitis C target and its pharmacological inhibitors by microfluidic affinity analysis.Einav, Shirit; Gerber, Doron; Bryson, Paul D; Sklan, Ella H; Elazar, Menashe; Maerkl, Sebastian J; Glenn, Jeffrey S; Quake, Stephen RNature biotechnology2008 Sep1019-2718758449
Constructing emotion: the experience of fear as a conceptual act.Lindquist, Kristen A; Barrett, Lisa FeldmanPsychological science2008 Sep898-90318947355
Functional grouping and cortical-subcortical interactions in emotion: a meta-analysis of neuroimaging studies.Kober, Hedy; Barrett, Lisa Feldman; Joseph, Josh; Bliss-Moreau, Eliza; Lindquist, Kristen; Wager, Tor DNeuroImage2008 Aug 15998-103118579414
Neural correlates of novelty and face-age effects in young and elderly adults.Wright, Christopher I; Negreira, Alyson; Gold, Andrea L; Britton, Jennifer C; Williams, Danielle; Barrett, Lisa FeldmanNeuroImage2008 Aug 15956-6818586522
Early alterations of AMPA receptors mediate synaptic potentiation induced by neonatal seizures.Rakhade, Sanjay N; Zhou, Chengwen; Aujla, Paven K; Fishman, Rachel; Sucher, Nikolaus J; Jensen, Frances EThe Journal of neuroscience : the official journal of the Society for Neuroscience2008 Aug 67979-9018685023
Brain correlates of autonomic modulation: combining heart rate variability with fMRI.Napadow, Vitaly; Dhond, Rupali; Conti, Giulia; Makris, Nikos; Brown, Emery N; Barbieri, RiccardoNeuroImage2008 Aug 1169-7718524629
Detecting bacteria and determining their susceptibility to antibiotics by stochastic confinement in nanoliter droplets using plug-based microfluidics.Boedicker, James Q; Li, Liang; Kline, Timothy R; Ismagilov, Rustem FLab on a chip2008 Aug1265-7218651067
Individual differences in learning the affective value of others under minimal conditions.Bliss-Moreau, Eliza; Barrett, Lisa Feldman; Wright, Christopher IEmotion (Washington, D.C.)2008 Aug479-9318729580
Motion processing streams in Drosophila are behaviorally specialized.Katsov, Alexander Y; Clandinin, Thomas RNeuron2008 Jul 31322-3518667159
Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.Maeder, Morgan L; Thibodeau-Beganny, Stacey; Osiak, Anna; Wright, David A; Anthony, Reshma M; Eichtinger, Magdalena; Jiang, Tao; Foley, Jonathan E; Winfrey, Ronnie J; Townsend, Jeffrey A; Unger-Wallace, Erica; Sander, Jeffry D; Muller-Lerch, Felix; Fu, FeMolecular cell2008 Jul 25294-30118657511
Rett syndrome-causing mutations in human MeCP2 result in diverse structural changes that impact folding and DNA interactions.Ghosh, Rajarshi P; Horowitz-Scherer, Rachel A; Nikitina, Tatiana; Gierasch, Lila M; Woodcock, Christopher LThe Journal of biological chemistry2008 Jul 1820523-3418499664
Application of dynamic point process models to cardiovascular control.Barbieri, Riccardo; Brown, Emery NBio Systems2008 Jul-Aug120-518515000
Ras-MAPK signaling promotes trophectoderm formation from embryonic stem cells and mouse embryos.Lu, Chi-Wei; Yabuuchi, Akiko; Chen, Lingyi; Viswanathan, Srinivas; Kim, Kitai; Daley, George QNature genetics2008 Jul921-618536715
Zinc-finger nucleases: the next generation emerges.Cathomen, Toni; Joung, J KeithMolecular therapy : the journal of the American Society of Gene Therapy2008 Jul1200-718545224
A peptoid antagonist of VEGF receptor 2 recognizes a 'hotspot' in the extracellular domain distinct from the hormone-binding site.Udugamasooriya, D Gomika; Ritchie, Caroline; Brekken, Rolf A; Kodadek, ThomasBioorganic & medicinal chemistry2008 Jun 156338-4318501615
Central memory CD8+ T cells appear to have a shorter lifespan and reduced abundance as a function of HIV disease progression.Ladell, Kristin; Hellerstein, Marc K; Cesar, Denise; Busch, Robert; Boban, Drina; McCune, Joseph MJournal of immunology (Baltimore, Md. : 1950)2008 Jun 157907-1818523254
Predictive behavior within microbial genetic networks.Tagkopoulos, Ilias; Liu, Yir-Chung; Tavazoie, SaeedScience (New York, N.Y.)2008 Jun 61313-718467556
High-throughput evaluation of relative cell permeability between peptoids and peptides.Tan, Niclas C; Yu, Peng; Kwon, Yong-Uk; Kodadek, ThomasBioorganic & medicinal chemistry2008 Jun 15853-6118490170
Delayed orexin signaling consolidates wakefulness and sleep: physiology and modeling.Diniz Behn, C G; Kopell, N; Brown, E N; Mochizuki, T; Scammell, T EJournal of neurophysiology2008 Jun3090-10318417630
Residue-level interrogation of macromolecular crowding effects on protein stability.Charlton, Lisa M; Barnes, Christopher O; Li, Conggang; Orans, Jillian; Young, Gregory B; Pielak, Gary JJournal of the American Chemical Society2008 May 286826-3018459780
Differential dynamical effects of macromolecular crowding on an intrinsically disordered protein and a globular protein: implications for in-cell NMR spectroscopy.Li, Conggang; Charlton, Lisa M; Lakkavaram, Asha; Seagle, Christopher; Wang, Guifang; Young, Gregory B; Macdonald, Jeffrey M; Pielak, Gary JJournal of the American Chemical Society2008 May 216310-118419123
HIV-induced changes in T cell signaling pathways.Schweneker, Marc; Favre, David; Martin, Jeffrey N; Deeks, Steven G; McCune, Joseph MJournal of immunology (Baltimore, Md. : 1950)2008 May 156490-50018453567
Improving biomedical imaging with gold nanocages.Xia, Younan; Skrabalak, Sara ESPIE newsroom2008 May 121200705.113519704778
Bacterial nitric-oxide synthases operate without a dedicated redox partner.Gusarov, Ivan; Starodubtseva, Marina; Wang, Zhi-Qiang; McQuade, Lindsey; Lippard, Stephen J; Stuehr, Dennis J; Nudler, EvgenyThe Journal of biological chemistry2008 May 913140-718316370
Analysis of between-trial and within-trial neural spiking dynamics.Czanner, Gabriela; Eden, Uri T; Wirth, Sylvia; Yanike, Marianna; Suzuki, Wendy A; Brown, Emery NJournal of neurophysiology2008 May2672-9318216233
Roles of beta-turns in protein folding: from peptide models to protein engineering.Marcelino, Anna Marie C; Gierasch, Lila MBiopolymers2008 May380-9118275088
Celebrating the scientific legacy of Elkan R. Blout.Gierasch, Lila M; Deber, Charles M; Brodsky, BarbaraBiopolymers2008 May32318307218
Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS.Behrens, Sebastian; Losekann, Tina; Pett-Ridge, Jennifer; Weber, Peter K; Ng, Wing-On; Stevenson, Bradley S; Hutcheon, Ian D; Relman, David A; Spormann, Alfred MApplied and environmental microbiology2008 May3143-5018359832
Unexpected failure rates for modular assembly of engineered zinc fingers.Ramirez, Cherie L; Foley, Jonathan E; Wright, David A; Muller-Lerch, Felix; Rahman, Shamim H; Cornu, Tatjana I; Winfrey, Ronnie J; Sander, Jeffry D; Fu, Fengli; Townsend, Jeffrey A; Cathomen, Toni; Voytas, Daniel F; Joung, J KeithNature methods2008 May374-518446154
Orthogonal cross-seeding: an approach to explore protein aggregates in living cells.Hinz, Justyna; Gierasch, Lila M; Ignatova, ZoyaBiochemistry2008 Apr 84196-20018330996
Selective blockade of microRNA processing by Lin28.Viswanathan, Srinivas R; Daley, George Q; Gregory, Richard IScience (New York, N.Y.)2008 Apr 497-10018292307
Comparison of zinc finger nucleases for use in gene targeting in mammalian cells.Pruett-Miller, Shondra M; Connelly, Jon P; Maeder, Morgan L; Joung, J Keith; Porteus, Matthew HMolecular therapy : the journal of the American Society of Gene Therapy2008 Apr707-1718334988
Enhanced plating efficiency of trypsin-adapted human embryonic stem cells is reversible and independent of trisomy 12/17.Chan, Elayne M; Yates, Frank; Boyer, Leah F; Schlaeger, Thorsten M; Daley, George QCloning and stem cells2008 Mar107-1818241122
Growth hormone enhances thymic function in HIV-1-infected adults.Napolitano, Laura A; Schmidt, Diane; Gotway, Michael B; Ameli, Niloufar; Filbert, Erin L; Ng, Myra M; Clor, Julie L; Epling, Lorrie; Sinclair, Elizabeth; Baum, Paul D; Li, Kai; Killian, Marisela Lua; Bacchetti, Peter; McCune, Joseph MThe Journal of clinical investigation2008 Mar1085-9818292808
DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases.Cornu, Tatjana I; Thibodeau-Beganny, Stacey; Guhl, Eva; Alwin, Stephen; Eichtinger, Magdalena; Joung, J Keith; Joung, J K; Cathomen, ToniMolecular therapy : the journal of the American Society of Gene Therapy2008 Feb352-818026168
Phylogenetic fate mapping: theoretical and experimental studies applied to the development of mouse fibroblasts.Salipante, Stephen J; Thompson, James M; Horwitz, Marshall SGenetics2008 Feb967-7718245843
Tailoring the Optical and Catalytic Properties of Gold-Silver Nanoboxes and Nanocages by Introducing Palladium.Cobley, Claire M; Campbell, Dean J; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2008 Feb748-75218568091
Bacillus anthracis-derived nitric oxide is essential for pathogen virulence and survival in macrophages.Shatalin, Konstantin; Gusarov, Ivan; Avetissova, Ekaterina; Shatalina, Yelena; McQuade, Lindsey E; Lippard, Stephen J; Nudler, EvgenyProceedings of the National Academy of Sciences of the United States of America2008 Jan 221009-1318215992
High resolution traction force microscopy based on experimental and computational advances.Sabass, Benedikt; Gardel, Margaret L; Waterman, Clare M; Schwarz, Ulrich SBiophysical journal2008 Jan 1207-2017827246
In vivo imaging of mucosal CD4+ T cells using single photon emission computed tomography in a murine model of colitis.Kanwar, Bittoo; Gao, Dong Wei; Hwang, Andrew B; Grenert, James P; Williams, Simon P; Franc, Benjamin; McCune, Joseph MJournal of immunological methods2008 Jan 121-3017964595
Relationship between T cell activation and CD4+ T cell count in HIV-seropositive individuals with undetectable plasma HIV RNA levels in the absence of therapy.Hunt, Peter W; Brenchley, Jason; Sinclair, Elizabeth; McCune, Joseph M; Roland, Michelle; Page-Shafer, Kimberly; Hsue, Priscilla; Emu, Brinda; Krone, Melissa; Lampiris, Harry; Douek, Daniel; Martin, Jeffrey N; Deeks, Steven GThe Journal of infectious diseases2008 Jan 1126-3318171295
Facile synthesis of gold nanoparticles with narrow size distribution by using AuCl or AuBr as the precursor.Lu, Xianmao; Tuan, Hsing-Yu; Korgel, Brian A; Xia, YounanChemistry (Weinheim an der Bergstrasse, Germany)20081584-9118058964
Mechanisms of mitotic spindle assembly and function.Walczak, Claire E; Heald, RebeccaInternational review of cytology2008111-5818275887
The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog.Cuneo, Matthew J; Tian, Yaji; Allert, Malin; Hellinga, Homme WBMC structural biology20082018373848
Amygdala and fusiform gyrus temporal dynamics: responses to negative facial expressions.Britton, Jennifer C; Shin, Lisa M; Barrett, Lisa Feldman; Rauch, Scott L; Wright, Christopher IBMC neuroscience20084418474111
A Comparative Study of Galvanic Replacement Reactions Involving Ag Nanocubes and AuCl(2) or AuCl(4).Au, Leslie; Lu, Xianmao; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)20082517-252218725963
Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation.DiGiulio, Daniel B; Romero, Roberto; Amogan, Harold P; Kusanovic, Juan Pedro; Bik, Elisabeth M; Gotsch, Francesca; Kim, Chong Jai; Erez, Offer; Edwin, Sam; Relman, David APloS one2008e305618725970
Morphological Evolution of Single-Crystal Ag Nanospheres during the Galvanic Replacement Reaction with HAuCl(4).Kim, Mun Ho; Lu, Xianmao; Wiley, Benjamin; Lee, Eric P; Xia, YounanThe journal of physical chemistry. C, Nanomaterials and interfaces20087872-787618787649
Dark-field microscopy studies of single metal nanoparticles: understanding the factors that influence the linewidth of the localized surface plasmon resonance.Hu, Min; Novo, Carolina; Funston, Alison; Wang, Haining; Staleva, Hristina; Zou, Shengli; Mulvaney, Paul; Xia, Younan; Hartland, Gregory VJournal of materials chemistry20081949-196018846243
Pre-miRNA loop nucleotides control the distinct activities of mir-181a-1 and mir-181c in early T cell development.Liu, Gwen; Min, Hyeyoung; Yue, Sibiao; Chen, Chang-ZhengPloS one2008e359218974849
Facile synthesis of branched au nanostructures by templating against a self-destructive lattice of magnetic fe nanoparticles.Li, Zhengquan; Li, Weiyang; Camargo, Pedro H C; Xia, YounanAngewandte Chemie (International ed. in English)20089653-618988222
Topographically flat, chemically patterned PDMS stamps made by dip-pen nanolithography.Zheng, Zijian; Jang, Jae-Won; Zheng, Gengfeng; Mirkin, Chad AAngewandte Chemie (International ed. in English)20089951-419012308
Ligand-induced conformational changes in a thermophilic ribose-binding protein.Cuneo, Matthew J; Beese, Lorena S; Hellinga, Homme WBMC structural biology20085019019243
A new mechanism for aging: chemical "age spots" in immortal DNA strands in distributed stem cells.Sherley, James LBreast disease200837-4619029623
Coupled contagion dynamics of fear and disease: mathematical and computational explorations.Epstein, Joshua M; Parker, Jon; Cummings, Derek; Hammond, Ross APloS one2008e395519079607
Chapter 3: A fluorescent window into protein folding and aggregation in cells.Ignatova, Zoya; Gierasch, Lila MMethods in cell biology200859-7019118672
Chapter 19: Mechanical response of cytoskeletal networks.Gardel, Margaret L; Kasza, Karen E; Brangwynne, Clifford P; Liu, Jiayu; Weitz, David AMethods in cell biology2008487-51919118688
Instantaneous frequency and amplitude modulation of EEG in the hippocampus reveals state dependent temporal structure.Nguyen, David P; Barbieri, Riccardo; Wilson, Matthew A; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20081711-519163009
Characterizing nonlinear heartbeat dynamics within a point process framework.Chen, Zhe; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20082781-419163282
Assessment of hippocampal and autonomic neural activity by point process models.Barbieri, Riccardo; Chen, Zhe; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference2008367919163509
Facile synthesis of tadpole-like nanostructures consisting of Au heads and Pd tails.Camargo, Pedro H C; Xiong, Yujie; Ji, Li; Zuo, Jian M; Xia, YounanJournal of the American Chemical Society2007 Dec 1915452-318027954
Nano-flares: probes for transfection and mRNA detection in living cells.Seferos, Dwight S; Giljohann, David A; Hill, Haley D; Prigodich, Andrew E; Mirkin, Chad AJournal of the American Chemical Society2007 Dec 1915477-918034495
In-cell aggregation of a polyglutamine-containing chimera is a multistep process initiated by the flanking sequence.Ignatova, Zoya; Thakur, Ashwani K; Wetzel, Ronald; Gierasch, Lila MThe Journal of biological chemistry2007 Dec 1436736-4317942400
Nonenzymatic detection of bacterial genomic DNA using the bio bar code assay.Hill, Haley D; Vega, Rafael A; Mirkin, Chad AAnalytical chemistry2007 Dec 19218-2317927207
Photoacoustic tomography of a rat cerebral cortex in vivo with au nanocages as an optical contrast agent.Yang, Xinmai; Skrabalak, Sara E; Li, Zhi-Yuan; Xia, Younan; Wang, Lihong VNano letters2007 Dec3798-80218020475
Nanodisk codes.Qin, Lidong; Banholzer, Matthew J; Millstone, Jill E; Mirkin, Chad ANano letters2007 Dec3849-5318041858
Versatile, fully automated, microfluidic cell culture system.Gomez-Sjoberg, Rafael; Leyrat, Anne A; Pirone, Dana M; Chen, Christopher S; Quake, Stephen RAnalytical chemistry2007 Nov 158557-6317953452
Periodate-triggered cross-linking reveals Sug2/Rpt4 as the molecular target of a peptoid inhibitor of the 19S proteasome regulatory particle.Lim, Hyun-Suk; Cai, Di; Archer, Chase T; Kodadek, ThomasJournal of the American Chemical Society2007 Oct 3112936-717929816
Neurotech for neuroscience: unifying concepts, organizing principles, and emerging tools.Silver, Rae; Boahen, Kwabena; Grillner, Sten; Kopell, Nancy; Olsen, Kathie LThe Journal of neuroscience : the official journal of the Society for Neuroscience2007 Oct 3111807-1917978017
Suppression of SIV-specific CD4+ T cells by infant but not adult macaque regulatory T cells: implications for SIV disease progression.Hartigan-O'Connor, Dennis J; Abel, Kristina; McCune, Joseph MThe Journal of experimental medicine2007 Oct 292679-9217954571
Gold Nanocages for Biomedical Applications.Skrabalak, Sara E; Chen, Jingyi; Au, Leslie; Lu, Xianmao; Li, Xingde; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2007 Oct 173177-318418648528
Structure-based design of robust glucose biosensors using a Thermotoga maritima periplasmic glucose-binding protein.Tian, Yaji; Cuneo, Matthew J; Changela, Anita; Hocker, Birte; Beese, Lorena S; Hellinga, Homme WProtein science : a publication of the Protein Society2007 Oct2240-5017766373
Gold nanocages for cancer detection and treatment.Skrabalak, Sara E; Au, Leslie; Lu, Xianmao; Li, Xingde; Xia, YounanNanomedicine (London, England)2007 Oct657-6817976028
Loss of T cell responses following long-term cryopreservation.Owen, Rachel E; Sinclair, Elizabeth; Emu, Brinda; Heitman, John W; Hirschkorn, Dale F; Epling, C Lorrie; Tan, Qi Xuan; Custer, Brian; Harris, Jeffery M; Jacobson, Mark A; McCune, Joseph M; Martin, Jeffery N; Hecht, Frederick M; Deeks, Steven G; Norris, PhJournal of immunological methods2007 Sep 3093-11517707394
Real-time observations of single bacteriophage lambda DNA ejections in vitro.Grayson, Paul; Han, Lin; Winther, Tabita; Phillips, RobProceedings of the National Academy of Sciences of the United States of America2007 Sep 1114652-717804798
Human alpha B-crystallin mutation causes oxido-reductive stress and protein aggregation cardiomyopathy in mice.Rajasekaran, Namakkal S; Connell, Patrice; Christians, Elisabeth S; Yan, Liang-Jun; Taylor, Ryan P; Orosz, Andras; Zhang, Xiu Q; Stevenson, Tamara J; Peshock, Ronald M; Leopold, Jane A; Barry, William H; Loscalzo, Joseph; Odelberg, Shannon J; Benjamin, IvCell2007 Aug 10427-3917693254
Microarray detection of duplex and triplex DNA binders with DNA-modified gold nanoparticles.Lytton-Jean, Abigail K R; Han, Min Su; Mirkin, Chad AAnalytical chemistry2007 Aug 16037-4117614366
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.Sander, Jeffry D; Zaback, Peter; Joung, J Keith; Voytas, Daniel F; Dobbs, DrenaNucleic acids research2007 JulW599-60517526515
Silver nanoparticle-oligonucleotide conjugates based on DNA with triple cyclic disulfide moieties.Lee, Jae-Seung; Lytton-Jean, Abigail K R; Hurst, Sarah J; Mirkin, Chad ANano letters2007 Jul2112-517571909
Identification of a peptoid inhibitor of the proteasome 19S regulatory particle.Lim, Hyun-Suk; Archer, Chase T; Kodadek, ThomasJournal of the American Chemical Society2007 Jun 277750-117536803
Dynamic interconversion of amorphous microparticles and crystalline rods in salen-based homochiral infinite coordination polymers.Jeon, You-Moon; Heo, Jungseok; Mirkin, Chad AJournal of the American Chemical Society2007 Jun 207480-117523645
Fabrication of cubic nanocages and nanoframes by dealloying Au/Ag alloy nanoboxes with an aqueous etchant based on Fe(NO3)3 or NH4OH.Lu, Xianmao; Au, Leslie; McLellan, Joseph; Li, Zhi-Yuan; Marquez, Manuel; Xia, YounanNano letters2007 Jun1764-917489641
Probing transcription factor dynamics at the single-molecule level in a living cell.Elf, Johan; Li, Gene-Wei; Xie, X SunneyScience (New York, N.Y.)2007 May 251191-417525339
Antiviral antibodies are necessary for control of simian immunodeficiency virus replication.Miller, Christopher J; Genesca, Meritxell; Abel, Kristina; Montefiori, David; Forthal, Donald; Bost, Kristen; Li, Jun; Favre, David; McCune, Joseph MJournal of virology2007 May5024-3517329327
Immuno gold nanocages with tailored optical properties for targeted photothermal destruction of cancer cells.Chen, Jingyi; Wang, Danling; Xi, Jiefeng; Au, Leslie; Siekkinen, Andy; Warsen, Addie; Li, Zhi-Yuan; Zhang, Hui; Xia, Younan; Li, XingdeNano letters2007 May1318-2217430005
Cooperative gating and spatial organization of membrane proteins through elastic interactions.Ursell, Tristan; Huang, Kerwyn Casey; Peterson, Eric; Phillips, RobPLoS computational biology2007 Maye8117480116
Vibrational response of Au-Ag nanoboxes and nanocages to ultrafast laser-induced heating.Petrova, Hristina; Lin, Chien-Hua; Hu, Min; Chen, Jingyi; Siekkinen, Andrew R; Xia, Younan; Sader, John E; Hartland, Gregory VNano letters2007 Apr1059-6317358093
Measuring flux distributions for diffusion in the small-numbers limit.Seitaridou, Effrosyni; Inamdar, Mandar M; Phillips, Rob; Ghosh, Kingshuk; Dill, KenThe journal of physical chemistry. B2007 Mar 82288-9217295536
Protein fabrication automation.Cox, J Colin; Lape, Janel; Sayed, Mahmood A; Hellinga, Homme WProtein science : a publication of the Protein Society2007 Mar379-9017242375
Local encoding of computationally designed enzyme activity.Allert, Malin; Dwyer, Mary A; Hellinga, Homme WJournal of molecular biology2007 Feb 23945-5317196220
Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.Garcia, Hernan G; Grayson, Paul; Han, Lin; Inamdar, Mandar; Kondev, Jane; Nelson, Philip C; Phillips, Rob; Widom, Jonathan; Wiggins, Paul ABiopolymers2007 Feb 5115-3017103419
Human CD4+ regulatory T cells express lower levels of the IL-7 receptor alpha chain (CD127), allowing consistent identification and sorting of live cells.Hartigan-O'Connor, Dennis J; Poon, Chungkee; Sinclair, Elizabeth; McCune, Joseph MJournal of immunological methods2007 Jan 3041-5217173927
Site-specific fluorescent labeling of poly-histidine sequences using a metal-chelating cysteine.Krishnan, Beena; Szymanska, Aneta; Gierasch, Lila MChemical biology & drug design2007 Jan31-4017313455
From the test tube to the cell: exploring the folding and aggregation of a beta-clam protein.Ignatova, Zoya; Krishnan, Beena; Bombardier, Jeffrey P; Marcelino, Anna Marie C; Hong, Jiang; Gierasch, Lila MBiopolymers2007157-6317206628
Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method.Meng, Xiangdong; Thibodeau-Beganny, Stacey; Jiang, Tao; Joung, J Keith; Wolfe, Scot ANucleic acids research2007e8117537811
Facile synthesis of Ag nanocubes and Au nanocages.Skrabalak, Sara E; Au, Leslie; Li, Xingde; Xia, YounanNature protocols20072182-9017853874
Effects of osmolytes on protein folding and aggregation in cells.Ignatova, Zoya; Gierasch, Lila MMethods in enzymology2007355-7217875429
Engineering Cys2His2 zinc finger domains using a bacterial cell-based two-hybrid selection system.Thibodeau-Beganny, Stacey; Joung, J KeithMethods in molecular biology (Clifton, N.J.)2007317-3418314590
Correlated Rayleigh Scattering Spectroscopy and Scanning Electron Microscopy Studies of Au-Ag Bimetallic Nanoboxes and Nanocages.Hu, Min; Chen, Jingyi; Marquez, Manuel; Xia, Younan; Hartland, Gregory VThe journal of physical chemistry. C, Nanomaterials and interfaces200712558-1256518629346
The bacterial two-hybrid system as a reporter system for analyzing protein-protein interactions.Giesecke, Astrid V; Joung, J KeithCSH protocols2007pdb.prot467221357036
Supramolecular allosteric cofacial porphyrin complexes.Oliveri, Christopher G; Gianneschi, Nathan C; Nguyen, SonBinh T; Mirkin, Chad A; Stern, Charlotte L; Wawrzak, Zdzislaw; Pink, MarenJournal of the American Chemical Society2006 Dec 2016286-9617165783
Maximizing DNA loading on a range of gold nanoparticle sizes.Hurst, Sarah J; Lytton-Jean, Abigail K R; Mirkin, Chad AAnalytical chemistry2006 Dec 158313-817165821
Increased carotid intima-media thickness in HIV patients is associated with increased cytomegalovirus-specific T-cell responses.Hsue, Priscilla Y; Hunt, Peter W; Sinclair, Elizabeth; Bredt, Barry; Franklin, Arlana; Killian, Maudi; Hoh, Rebecca; Martin, Jeffrey N; McCune, Joseph M; Waters, David D; Deeks, Steven GAIDS (London, England)2006 Nov 282275-8317117013
Direct measurement of T-cell receptor repertoire diversity with AmpliCot.Baum, Paul D; McCune, Joseph MNature methods2006 Nov895-90117060913
Dip-pen nanolithography of high-melting-temperature molecules.Huang, Ling; Chang, Yu-Hsu; Kakkassery, Joseph J; Mirkin, Chad AThe journal of physical chemistry. B2006 Oct 2620756-817048882
Prevalence of CXCR4 tropism among antiretroviral-treated HIV-1-infected patients with detectable viremia.Hunt, Peter W; Harrigan, P Richard; Huang, Wei; Bates, Michael; Williamson, David W; McCune, Joseph M; Price, Richard W; Spudich, Serena S; Lampiris, Harry; Hoh, Rebecca; Leigler, Teri; Martin, Jeffrey N; Deeks, Steven GThe Journal of infectious diseases2006 Oct 1926-3016960780
Cytotrophoblast induction of arterial apoptosis and lymphangiogenesis in an in vivo model of human placentation.Red-Horse, Kristy; Rivera, Jose; Schanz, Andrea; Zhou, Yan; Winn, Virginia; Kapidzic, Mirhan; Maltepe, Emin; Okazaki, Kelly; Kochman, Ronit; Vo, Kim Chi; Giudice, Linda; Erlebacher, Adrian; McCune, Joseph M; Stoddart, Cheryl A; Fisher, Susan JThe Journal of clinical investigation2006 Oct2643-5216998586
The crystal structure of a thermophilic glucose binding protein reveals adaptations that interconvert mono and di-saccharide binding sites.Cuneo, Matthew J; Changela, Anita; Warren, Joshua J; Beese, Lorena S; Hellinga, Homme WJournal of molecular biology2006 Sep 15259-7016904687
Separation of tricomponent protein mixtures with triblock nanorods.Oh, Byung-Keun; Park, Sungho; Millstone, Jill E; Lee, Seung Woo; Lee, Ki-Bum; Mirkin, Chad AJournal of the American Chemical Society2006 Sep 1311825-916953622
Binding and signaling of surface-immobilized reagentless fluorescent biosensors derived from periplasmic binding proteins.de Lorimier, Robert M; Tian, Yaji; Hellinga, Homme WProtein science : a publication of the Protein Society2006 Aug1936-4416823040
Asymmetric functionalization of gold nanoparticles with oligonucleotides.Xu, Xiaoyang; Rosi, Nathaniel L; Wang, Yuhuang; Huo, Fengwei; Mirkin, Chad AJournal of the American Chemical Society2006 Jul 269286-716848436
Dynamics of DNA ejection from bacteriophage.Inamdar, Mandar M; Gelbart, William M; Phillips, RobBiophysical journal2006 Jul 15411-2016679360
Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates.Rizk, Shahir S; Cuneo, Matthew J; Hellinga, Homme WProtein science : a publication of the Protein Society2006 Jul1745-5116751609
Enhanced signals and fast nucleic acid hybridization by microfluidic chaotic mixing.Liu, Jian; Williams, Brian A; Gwirtz, Richele M; Wold, Barbara J; Quake, StephenAngewandte Chemie (International ed. in English)2006 May 263618-2316639763
Triple-Decker Complexes Formed via the Weak Link Approach.Jeon, You-Moon; Heo, Jungseok; Brown, Aaron M; Mirkin, Chad AOrganometallics2006 May 222729-273219060957
Regulation of T cell responses in the developing human fetus.Michaelsson, Jakob; Mold, Jeff E; McCune, Joseph M; Nixon, Douglas FJournal of immunology (Baltimore, Md. : 1950)2006 May 155741-816670279
The effect of genome length on ejection forces in bacteriophage lambda.Grayson, Paul; Evilevitch, Alex; Inamdar, Mandar M; Purohit, Prashant K; Gelbart, William M; Knobler, Charles M; Phillips, RobVirology2006 May 10430-616469346
A gold nanoparticle based approach for screening triplex DNA binders.Han, Min Su; Lytton-Jean, Abigail K R; Mirkin, Chad AJournal of the American Chemical Society2006 Apr 194954-516608320
Volume-exclusion effects in tethered-particle experiments: bead size matters.Segall, Darren E; Nelson, Philip C; Phillips, RobPhysical review letters2006 Mar 308830616606235
Multipole plasmon resonances in gold nanorods.Payne, Emma Kathryn; Shuford, Kevin L; Park, Sungho; Schatz, George C; Mirkin, Chad AThe journal of physical chemistry. B2006 Feb 92150-416471797
Teaching the principles of statistical dynamics.Ghosh, Kingshuk; Dill, Ken A; Inamdar, Mandar M; Seitaridou, Effrosyni; Phillips, RobAmerican journal of physics2006 Feb 1123-13323585693
Counter-selectable marker for bacterial-based interaction trap systems.Meng, Xiangdong; Smith, Robin M; Giesecke, Astrid V; Joung, J Keith; Wolfe, Scot ABioTechniques2006 Feb179-8416526407
Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers.Giesecke, Astrid V; Fang, Rui; Joung, J KeithMolecular systems biology20062006.201116732192
Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.Wright, David A; Thibodeau-Beganny, Stacey; Sander, Jeffry D; Winfrey, Ronnie J; Hirsh, Andrew S; Eichtinger, Magdalena; Fu, Fengli; Porteus, Matthew H; Dobbs, Drena; Voytas, Daniel F; Joung, J KeithNature protocols20061637-5217406455
Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosa.Vallet-Gely, Isabelle; Donovan, Katherine E; Fang, Rui; Joung, J Keith; Dove, Simon LProceedings of the National Academy of Sciences of the United States of America2005 Aug 211082-716043713
A combined yeast/bacteria two-hybrid system: development and evaluation.Serebriiskii, Ilya G; Fang, Rui; Latypova, Ekaterina; Hopkins, Richard; Vinson, Charles; Joung, J Keith; Golemis, Erica AMolecular & cellular proteomics : MCP2005 Jun819-2615781424
Transcriptional regulation by the numbers: models.Bintu, Lacramioara; Buchler, Nicolas E; Garcia, Hernan G; Gerland, Ulrich; Hwa, Terence; Kondev, Jane; Phillips, RobCurrent opinion in genetics & development2005 Apr116-2415797194
Transcriptional regulation by the numbers: applications.Bintu, Lacramioara; Buchler, Nicolas E; Garcia, Hernan G; Gerland, Ulrich; Hwa, Terence; Kondev, Jane; Kuhlman, Thomas; Phillips, RobCurrent opinion in genetics & development2005 Apr125-3515797195
Exact theory of kinkable elastic polymers.Wiggins, Paul A; Phillips, Rob; Nelson, Philip CPhysical review. E, Statistical, nonlinear, and soft matter physics2005 Feb02190915783354

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