Publications Search by Program
Search Result
The search results on this publication page are automated on a monthly schedule based on acknowledgment of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
Big Data to Knowledge (2188)
| Publication Title | Authors | Journal | Publication Date | Page No | PubMedID |
|---|---|---|---|---|---|
| Using the Reactome Database. | Rothfels, Karen; Milacic, Marija; Matthews, Lisa; Haw, Robin; Sevilla, Cristoffer; Gillespie, Marc; Stephan, Ralf; Gong, Chuqiao; Ragueneau, Eliot; May, Bruce; Shamovsky, Veronica; Wright, Adam; Weiser, Joel; Beavers, Deidre; Conley, Patrick; Tiwari, Krishna; Jassal, Bijay; Griss, Johannes; Senff-Ribeiro, Andrea; Brunson, Timothy; Petryszak, Robert; Hermjakob, Henning; D'Eustachio, Peter; Wu, Guanming; Stein, Lincoln | Current protocols | 2023 Apr | e722 | 37053306 |
| Efficient and Precise Secure Generalized Edit Distance and Beyond. | Zhu, Ruiyu; Huang, Yan | IEEE transactions on dependable and secure computing | 2022 | 579-590 | 37020740 |
| Direct estimation of regional lung volume change from paired and single CT images using residual regression neural network. | Gerard, Sarah E; Chaudhary, Muhammad F A; Herrmann, Jacob; Christensen, Gary E; San José Estépar, Raúl; Reinhardt, Joseph M; Hoffman, Eric A | Medical physics | 2023 Mar 17 | 36929883 | |
| Conduct problems are associated with accelerated thinning of emotion-related cortical regions in a community-based sample of adolescents. | Albaugh, Matthew D; Hudziak, James J; Spechler, Philip A; Chaarani, Bader; Lepage, Claude; Jeon, Seun; Rioux, Pierre; Evans, Alan C; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh; IMAGEN Consortium | Psychiatry research. Neuroimaging | 2023 Apr | 111614 | 36812809 |
| Genomic patterns linked to gray matter alterations underlying working memory deficits in adults and adolescents with attention-deficit/hyperactivity disorder. | Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Jiang, Wenhao; Rootes-Murdy, Kelly; Schoenmacker, Gido; Silva, Rogers F; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Oosterlaan, Jaap; Hoekstra, Pieter J; Heslenfeld, Dirk; Hartman, Catharina A; Sprooten, Emma; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, Jingyu | Translational psychiatry | 2023 Feb 11 | 50 | 36774336 |
| Optimal gap-affine alignment in O(s) space. | Marco-Sola, Santiago; Eizenga, Jordan M; Guarracino, Andrea; Paten, Benedict; Garrison, Erik; Moreto, Miquel | Bioinformatics (Oxford, England) | 2023 Feb 03 | 36749013 | |
| ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. | Rehfeldt, Tobias G; Gabriels, Ralf; Bouwmeester, Robbin; Gessulat, Siegfried; Neely, Benjamin A; Palmblad, Magnus; Perez-Riverol, Yasset; Schmidt, Tobias; Vizcaíno, Juan Antonio; Deutsch, Eric W | Journal of proteome research | 2023 Feb 03 | 632-636 | 36693629 |
| Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite. | Deutsch, Eric W; Mendoza, Luis; Shteynberg, David D; Hoopmann, Michael R; Sun, Zhi; Eng, Jimmy K; Moritz, Robert L | Journal of proteome research | 2023 Feb 03 | 615-624 | 36648445 |
| Microstructural mapping of dentate gyrus pathology in Alzheimer's disease: A 16.4 Tesla MRI study. | Shih, Nien-Chu; Kurniawan, Nyoman D; Cabeen, Ryan P; Korobkova, Laura; Wong, Ellen; Chui, Helena C; Clark, Kristi A; Miller, Carol A; Hawes, Debra; Jones, Kymry T; Sepehrband, Farshid | NeuroImage. Clinical | 2023 | 103318 | 36630864 |
| MicroRNA-eQTLs in the developing human neocortex link miR-4707-3p expression to brain size. | Lafferty, Michael J; Aygün, Nil; Patel, Niyanta K; Krupa, Oleh; Liang, Dan; Wolter, Justin M; Geschwind, Daniel H; de la Torre-Ubieta, Luis; Stein, Jason L | eLife | 2023 Jan 11 | 36629315 | |
| Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. | Deutsch, Eric W; Vizcaíno, Juan Antonio; Jones, Andrew R; Binz, Pierre-Alain; Lam, Henry; Klein, Joshua; Bittremieux, Wout; Perez-Riverol, Yasset; Tabb, David L; Walzer, Mathias; Ricard-Blum, Sylvie; Hermjakob, Henning; Neumann, Steffen; Mak, Tytus D; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Bandeira, Nuno; Carver, Jeremy; Pullman, Benjamin; Sun, Zhi; Hoffmann, Nils; Shofstahl, Jim; Zhu, Yunping; Licata, Luana; Quaglia, Federica; Tosatto, Silvio C E; Orchard, Sandra E | Journal of proteome research | 2023 Feb 03 | 287-301 | 36626722 |
| Social environment and brain structure in adolescent mental health: A cross-sectional structural equation modelling study using IMAGEN data. | Stepanous, Jessica; Munford, Luke; Qualter, Pamela; Banaschewski, Tobias; Nees, Frauke; Elliott, Rebecca; IMAGEN Consortium | PloS one | 2023 | e0280062 | 36603003 |
| Altered lateralization of the cingulum in deployment-related traumatic brain injury: An ENIGMA military-relevant brain injury study. | Dennis, Emily L; Newsome, Mary R; Lindsey, Hannah M; Adamson, Maheen; Austin, Tara A; Disner, Seth G; Eapen, Blessen C; Esopenko, Carrie; Franz, Carol E; Geuze, Elbert; Haswell, Courtney; Hinds 2nd, Sidney R; Hodges, Cooper B; Irimia, Andrei; Kenney, Kimbra; Koerte, Inga K; Kremen, William S; Levin, Harvey S; Morey, Rajendra A; Ollinger, John; Rowland, Jared A; Scheibel, Randall S; Shenton, Martha E; Sullivan, Danielle R; Talbert, Leah D; Thomopoulos, Sophia I; Troyanskaya, Maya; Walker, William C; Wang, Xin; Ware, Ashley L; Werner, John Kent; Williams, Wright; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A | Human brain mapping | 2023 Apr 01 | 1888-1900 | 36583562 |
| An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. | Chen, Xueer; Chen, Lujia; Kürten, Cornelius H L; Jabbari, Fattaneh; Vujanovic, Lazar; Ding, Ying; Lu, Binfeng; Lu, Kevin; Kulkarni, Aditi; Tabib, Tracy; Lafyatis, Robert; Cooper, Gregory F; Ferris, Robert; Lu, Xinghua | PLoS computational biology | 2022 Dec | e1010761 | 36548438 |
| Vigilance associates with the low-dimensional structure of fMRI data. | Zhang, Shengchao; Goodale, Sarah E; Gold, Benjamin P; Morgan, Victoria L; Englot, Dario J; Chang, Catie | NeuroImage | 2023 Feb 15 | 119818 | 36535323 |
| Right Prefrontal Cortical Thickness Is Associated With Response to Cognitive-Behavioral Therapy in Children With Obsessive-Compulsive Disorder. | Bertolín, Sara; Alonso, Pino; Martínez-Zalacaín, Ignacio; Menchón, Jose M; Jimenez-Murcia, Susana; Baker, Justin T; Bargalló, Nuria; Batistuzzo, Marcelo Camargo; Boedhoe, Premika S W; Brennan, Brian P; Feusner, Jamie D; Fitzgerald, Kate D; Fontaine, Martine; Hansen, Bjarne; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Jahanshad, Neda; Jaspers-Fayer, Fern; Kuno, Masaru; Kvale, Gerd; Lazaro, Luisa; Machado-Sousa, Mafalda; Marsh, Rachel; Morgado, Pedro; Nakagawa, Akiko; Norman, Luke; Nurmi, Erika L; O'Neill, Joseph; Ortiz, Ana E; Perriello, Chris; Piacentini, John; Picó-Pérez, Maria; Shavitt, Roseli G; Shimizu, Eiji; Simpson, Helen Blair; Stewart, S Evelyn; Thomopoulos, Sophia I; Thorsen, Anders Lillevik; Walitza, Susanne; Wolters, Lidewij H; ENIGMA-OCD Working Group; Thompson, Paul M; van den Heuvel, Odile A; Stein, Dan J; Soriano-Mas, Carles | Journal of the American Academy of Child and Adolescent Psychiatry | 2023 Apr | 403-414 | 36526161 |
| STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci. | Dashnow, Harriet; Pedersen, Brent S; Hiatt, Laurel; Brown, Joe; Beecroft, Sarah J; Ravenscroft, Gianina; LaCroix, Amy J; Lamont, Phillipa; Roxburgh, Richard H; Rodrigues, Miriam J; Davis, Mark; Mefford, Heather C; Laing, Nigel G; Quinlan, Aaron R | Genome biology | 2022 Dec 14 | 36517892 | |
| In vivo white matter microstructure in adolescents with early-onset psychosis: a multi-site mega-analysis. | Barth, Claudia; Kelly, Sinead; Nerland, Stener; Jahanshad, Neda; Alloza, Clara; Ambrogi, Sonia; Andreassen, Ole A; Andreou, Dimitrios; Arango, Celso; Baeza, Inmaculada; Banaj, Nerisa; Bearden, Carrie E; Berk, Michael; Bohman, Hannes; Castro-Fornieles, Josefina; Chye, Yann; Crespo-Facorro, Benedicto; de la Serna, Elena; Díaz-Caneja, Covadonga M; Gurholt, Tiril P; Hegarty, Catherine E; James, Anthony; Janssen, Joost; Johannessen, Cecilie; Jönsson, Erik G; Karlsgodt, Katherine H; Kochunov, Peter; Lois, Noemi G; Lundberg, Mathias; Myhre, Anne M; Pascual-Diaz, Saül; Piras, Fabrizio; Smelror, Runar E; Spalletta, Gianfranco; Stokkan, Therese S; Sugranyes, Gisela; Suo, Chao; Thomopoulos, Sophia I; Tordesillas-Gutiérrez, Diana; Vecchio, Daniela; Wedervang-Resell, Kirsten; Wortinger, Laura A; Thompson, Paul M; Agartz, Ingrid | Molecular psychiatry | 2022 Dec 12 | 36510004 | |
| Brain ageing in schizophrenia: evidence from 26 international cohorts via the ENIGMA Schizophrenia consortium. | Constantinides, Constantinos; Han, Laura K M; Alloza, Clara; Antonucci, Linda Antonella; Arango, Celso; Ayesa-Arriola, Rosa; Banaj, Nerisa; Bertolino, Alessandro; Borgwardt, Stefan; Bruggemann, Jason; Bustillo, Juan; Bykhovski, Oleg; Calhoun, Vince; Carr, Vaughan; Catts, Stanley; Chung, Young-Chul; Crespo-Facorro, Benedicto; Díaz-Caneja, Covadonga M; Donohoe, Gary; Plessis, Stefan Du; Edmond, Jesse; Ehrlich, Stefan; Emsley, Robin; Eyler, Lisa T; Fuentes-Claramonte, Paola; Georgiadis, Foivos; Green, Melissa; Guerrero-Pedraza, Amalia; Ha, Minji; Hahn, Tim; Henskens, Frans A; Holleran, Laurena; Homan, Stephanie; Homan, Philipp; Jahanshad, Neda; Janssen, Joost; Ji, Ellen; Kaiser, Stefan; Kaleda, Vasily; Kim, Minah; Kim, Woo-Sung; Kirschner, Matthias; Kochunov, Peter; Kwak, Yoo Bin; Kwon, Jun Soo; Lebedeva, Irina; Liu, Jingyu; Mitchie, Patricia; Michielse, Stijn; Mothersill, David; Mowry, Bryan; de la Foz, Víctor Ortiz-García; Pantelis, Christos; Pergola, Giulio; Piras, Fabrizio; Pomarol-Clotet, Edith; Preda, Adrian; Quidé, Yann; Rasser, Paul E; Rootes-Murdy, Kelly; Salvador, Raymond; Sangiuliano, Marina; Sarró, Salvador; Schall, Ulrich; Schmidt, André; Scott, Rodney J; Selvaggi, Pierluigi; Sim, Kang; Skoch, Antonin; Spalletta, Gianfranco; Spaniel, Filip; Thomopoulos, Sophia I; Tomecek, David; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; van Amelsvoort, Therese; Vázquez-Bourgon, Javier; Vecchio, Daniela; Voineskos, Aristotle; Weickert, Cynthia S; Weickert, Thomas; Thompson, Paul M; Schmaal, Lianne; van Erp, Theo G M; Turner, Jessica; Cole, James H; ENIGMA Schizophrenia Consortium; Dima, Danai; Walton, Esther | Molecular psychiatry | 2022 Dec 09 | 36494461 | |
| Anxiety onset in adolescents: a machine-learning prediction. | Chavanne, Alice V; Paillère Martinot, Marie Laure; Penttilä, Jani; Grimmer, Yvonne; Conrod, Patricia; Stringaris, Argyris; van Noort, Betteke; Isensee, Corinna; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; Artiges, Eric; IMAGEN consortium | Molecular psychiatry | 2023 Feb | 639-646 | 36481929 |
| Modeling the impact of data sharing on variant classification. | Casaletto, James; Cline, Melissa; Shirts, Brian | Journal of the American Medical Informatics Association : JAMIA | 2023 Feb 16 | 466-474 | 36451272 |
| Federated Analysis in COINSTAC Reveals Functional Network Connectivity and Spectral Links to Smoking and Alcohol Consumption in Nearly 2,000 Adolescent Brains. | Gazula, Harshvardhan; Rootes-Murdy, Kelly; Holla, Bharath; Basodi, Sunitha; Zhang, Zuo; Verner, Eric; Kelly, Ross; Murthy, Pratima; Chakrabarti, Amit; Basu, Debasish; Bhagyalakshmi Nanjayya, Subodh; Lenin Singh, Rajkumar; Lourembam Singh, Roshan; Kalyanram, Kartik; Kartik, Kamakshi; Kalyanaraman, Kumaran; Ghattu, Krishnaveni; Kuriyan, Rebecca; Kurpad, Sunita Simon; Barker, Gareth J; Bharath, Rose Dawn; Desrivieres, Sylvane; Purushottam, Meera; Orfanos, Dimitri Papadopoulos; Sharma, Eesha; Hickman, Matthew; Toledano, Mireille; Vaidya, Nilakshi; Banaschewski, Tobias; Bokde, Arun L W; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillére Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Paus, Tomás; Poustka, Luise; Fröhner, Juliane H; Robinson, Lauren; Smolka, Michael N; Walter, Henrik; Winterer, Jeanne; Whelan, Robert; IMAGEN Consortium; Turner, Jessica A; Sarwate, Anand D; Plis, Sergey M; Benegal, Vivek; Schumann, Gunter; Calhoun, Vince D | Neuroinformatics | 2022 Nov 25 | 36434478 | |
| Making Common Fund data more findable: catalyzing a data ecosystem. | Charbonneau, Amanda L; Brady, Arthur; Czajkowski, Karl; Aluvathingal, Jain; Canchi, Saranya; Carter, Robert; Chard, Kyle; Clarke, Daniel J B; Crabtree, Jonathan; Creasy, Heather H; D'Arcy, Mike; Felix, Victor; Giglio, Michelle; Gingrich, Alicia; Harris, Rayna M; Hodges, Theresa K; Ifeonu, Olukemi; Jeon, Minji; Kropiwnicki, Eryk; Lim, Marisa C W; Liming, R Lee; Lumian, Jessica; Mahurkar, Anup A; Mandal, Meisha; Munro, James B; Nadendla, Suvarna; Richter, Rudyard; Romano, Cia; Rocca-Serra, Philippe; Schor, Michael; Schuler, Robert E; Tangmunarunkit, Hongsuda; Waldrop, Alex; Williams, Cris; Word, Karen; Sansone, Susanna-Assunta; Ma'ayan, Avi; Wagner, Rick; Foster, Ian; Kesselman, Carl; Brown, C Titus; White, Owen | GigaScience | 2022 Nov 21 | 36409836 | |
| Predictive Models for Length of Stay and Discharge Disposition in Elective Spine Surgery: Development, Validation, and Comparison to the ACS NSQIP Risk Calculator. | Arora, Ayush; Lituiev, Dmytro; Jain, Deeptee; Hadley, Dexter; Butte, Atul J; Berven, Sigurd; Peterson, Thomas A | Spine | 2023 Jan 01 | 36398784 | |
| Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia. | Wen, Jia; Trost, Brett; Engchuan, Worrawat; Halvorsen, Matthew; Pallotto, Linda M; Mitina, Aleksandra; Ancalade, NaEshia; Farrell, Martilias; Backstrom, Ian; Guo, Keyi; Pellecchia, Giovanna; Thiruvahindrapuram, Bhooma; Giusti-Rodriguez, Paola; Rosen, Jonathan David; Li, Yun; Won, Hyejung; Magnusson, Patrik K E; Gyllensten, Ulf; Bassett, Anne S; Hultman, Christina M; Sullivan, Patrick F; Yuen, Ryan K C; Szatkiewicz, Jin P | Molecular psychiatry | 2023 Jan | 475-482 | 36380236 |
| Genetic Heterogeneity Shapes Brain Connectivity in Psychiatry. | Moreau, Clara A; Harvey, Annabelle; Kumar, Kuldeep; Huguet, Guillaume; Urchs, Sebastian G W; Douard, Elise A; Schultz, Laura M; Sharmarke, Hanad; Jizi, Khadije; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Rolland, Thomas; Martineau, Jean-Louis; Orban, Pierre; Silva, Ana Isabel; Hall, Jeremy; van den Bree, Marianne B M; Owen, Michael J; Linden, David E J; Labbe, Aurelie; Lippé, Sarah; Bearden, Carrie E; Almasy, Laura; Glahn, David C; Thompson, Paul M; Bourgeron, Thomas; Bellec, Pierre; Jacquemont, Sebastien | Biological psychiatry | 2023 Jan 01 | 45-58 | 36372570 |
| The ProteomeXchange consortium at 10 years: 2023 update. | Deutsch, Eric W; Bandeira, Nuno; Perez-Riverol, Yasset; Sharma, Vagisha; Carver, Jeremy J; Mendoza, Luis; Kundu, Deepti J; Wang, Shengbo; Bandla, Chakradhar; Kamatchinathan, Selvakumar; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan Antonio | Nucleic acids research | 2022 Nov 12 | 36370099 | |
| Arc controls alcohol cue relapse by a central amygdala mechanism. | Pagano, Roberto; Salamian, Ahmad; Zielinski, Janusz; Beroun, Anna; Nalberczak-Skóra, Maria; Skonieczna, Edyta; Cały, Anna; Tay, Nicole; Banaschewski, Tobias; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; IMAGEN consortium; Kalita, Katarzyna; Bito, Haruhiko; Müller, Christian P; Schumann, Gunter; Okuno, Hiroyuki; Radwanska, Kasia | Molecular psychiatry | 2023 Feb | 733-745 | 36357670 |
| Complementary evolution of coding and noncoding sequence underlies mammalian hairlessness. | Kowalczyk, Amanda; Chikina, Maria; Clark, Nathan | eLife | 2022 Nov 07 | 36342464 | |
| Relationships between physical activity, healthy eating and cortical thickness in children and young adults. | Angelo, Brendan C; DeFendis, Alexis; Yau, Anita; Alves, Jasmin M; Thompson, Paul M; Xiang, Anny H; Page, Kathleen A; Luo, Shan | Brain imaging and behavior | 2022 Nov 02 | 36319908 | |
| The 2022 Report on the Human Proteome from the HUPO Human Proteome Project. | Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Pineau, Charles; Packer, Nicolle H; Cristea, Ileana M; Lindskog, Cecilia; Weintraub, Susan T; Orchard, Sandra; Roehrl, Michael H A; Nice, Edouard; Liu, Siqi; Bandeira, Nuno; Chen, Yu-Ju; Guo, Tiannan; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W | Journal of proteome research | 2023 Apr 07 | 1024-1042 | 36318223 |
| Evaluating and Extending the Informed Consent Ontology for Representing Permissions from the Clinical Domain. | Umberfield, Elizabeth E; Stansbury, Cooper; Ford, Kathleen; Jiang, Yun; Kardia, Sharon L R; Thomer, Andrea K; Harris, Marcelline R | Applied ontology | 2022 | 36312514 | |
| Progressive Spinal Cord Degeneration in Friedreich's Ataxia: Results from ENIGMA-Ataxia. | Rezende, Thiago J R; Adanyeguh, Isaac M; Arrigoni, Filippo; Bender, Benjamin; Cendes, Fernando; Corben, Louise A; Deistung, Andreas; Delatycki, Martin; Dogan, Imis; Egan, Gary F; Göricke, Sophia L; Georgiou-Karistianis, Nellie; Henry, Pierre-Gilles; Hutter, Diane; Jahanshad, Neda; Joers, James M; Lenglet, Christophe; Lindig, Tobias; Martinez, Alberto R M; Martinuzzi, Andrea; Paparella, Gabriella; Peruzzo, Denis; Reetz, Kathrin; Romanzetti, Sandro; Schöls, Ludger; Schulz, Jörg B; Synofzik, Matthis; Thomopoulos, Sophia I; Thompson, Paul M; Timmann, Dagmar; Harding, Ian H; França Jr, Marcondes C | Movement disorders : official journal of the Movement Disorder Society | 2022 Oct 29 | 36308733 | |
| Reversal of cancer gene expression identifies repurposed drugs for diffuse intrinsic pontine glioma. | Zhao, Guisheng; Newbury, Patrick; Ishi, Yukitomo; Chekalin, Eugene; Zeng, Billy; Glicksberg, Benjamin S; Wen, Anita; Paithankar, Shreya; Sasaki, Takahiro; Suri, Amreena; Nazarian, Javad; Pacold, Michael E; Brat, Daniel J; Nicolaides, Theodore; Chen, Bin; Hashizume, Rintaro | Acta neuropathologica communications | 2022 Oct 23 | 36274161 | |
| Probing predilection to Crohn's disease and Crohn's disease flares: A crowd-sourced bioinformatics approach. | Aljabban, Jihad; Rohr, Michael; Borkowski, Vincent J; Nemer, Mary; Cohen, Eli; Hashi, Naima; Aljabban, Hisham; Boateng, Emmanuel; Syed, Saad; Mohammed, Mohammed; Mukhtar, Ali; Hadley, Dexter; Panahiazar, Maryam | Journal of pathology informatics | 2022 | 36268056 | |
| Psychotic Like Experiences in Healthy Adolescents are Underpinned by Lower Fronto-Temporal Cortical Gyrification: a Study from the IMAGEN Consortium. | Maitra, Raka; Horne, Charlotte M; O'Daly, Owen; Papanastasiou, Evangelos; Gaser, Christian; IMAGEN list of authors; IMAGEN Consortium | Schizophrenia bulletin | 2023 Mar 15 | 309-318 | 36226895 |
| Decoding the transcriptome of calcified atherosclerotic plaque at single-cell resolution. | Alsaigh, Tom; Evans, Doug; Frankel, David; Torkamani, Ali | Communications biology | 2022 Oct 12 | 36224302 | |
| Assessing general versus specific liability for externalizing problems in adolescence: Concurrent and prospective prediction of symptoms of conduct disorder, ADHD, and substance use. | Perkins, Emily R; Joyner, Keanan J; Foell, Jens; Drislane, Laura E; Brislin, Sarah J; Frick, Paul J; Yancey, James R; Soto, Elia F; Ganley, Colleen M; Keel, Pamela K; Sica, Claudio; Flor, Herta; Nees, Frauke; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; The Imagen Consortium; Patrick, Christopher J | Journal of psychopathology and clinical science | 2022 Oct | 36222627 | |
| Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. | Matentzoglu, Nicolas; Goutte-Gattat, Damien; Tan, Shawn Zheng Kai; Balhoff, James P; Carbon, Seth; Caron, Anita R; Duncan, William D; Flack, Joe E; Haendel, Melissa; Harris, Nomi L; Hogan, William R; Hoyt, Charles Tapley; Jackson, Rebecca C; Kim, HyeongSik; Kir, Huseyin; Larralde, Martin; McMurry, Julie A; Overton, James A; Peters, Bjoern; Pilgrim, Clare; Stefancsik, Ray; Robb, Sofia Mc; Toro, Sabrina; Vasilevsky, Nicole A; Walls, Ramona; Mungall, Christopher J; Osumi-Sutherland, David | Database : the journal of biological databases and curation | 2022 Oct 08 | 36208225 | |
| Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis. | Aksit, Melis A; Ling, Hua; Pace, Rhonda G; Raraigh, Karen S; Onchiri, Frankline; Faino, Anna V; Pagel, Kymberleigh; Pugh, Elizabeth; Stilp, Adrienne M; Sun, Quan; Blue, Elizabeth E; Wright, Fred A; Zhou, Yi-Hui; Bamshad, Michael J; Gibson, Ronald L; Knowles, Michael R; Cutting, Garry R; Blackman, Scott M; CF Genome Project | American journal of human genetics | 2022 Oct 06 | 1894-1908 | 36206743 |
| Dissecting novel mechanisms of hepatitis B virus related hepatocellular carcinoma using meta-analysis of public data. | Aljabban, Jihad; Rohr, Michael; Syed, Saad; Cohen, Eli; Hashi, Naima; Syed, Sharjeel; Khorfan, Kamal; Aljabban, Hisham; Borkowski, Vincent; Segal, Michael; Mukhtar, Mohamed; Mohammed, Mohammed; Boateng, Emmanuel; Nemer, Mary; Panahiazar, Maryam; Hadley, Dexter; Jalil, Sajid; Mumtaz, Khalid | World journal of gastrointestinal oncology | 2022 Sep 15 | 36187396 | |
| Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. | Taubes, Alice; Nova, Phil; Zalocusky, Kelly A; Kosti, Idit; Bicak, Mesude; Zilberter, Misha Y; Hao, Yanxia; Yoon, Seo Yeon; Oskotsky, Tomiko; Pineda, Silvia; Chen, Bin; Jones, Emily A Aery; Choudhary, Krishna; Grone, Brian; Balestra, Maureen E; Chaudhry, Fayzan; Paranjpe, Ishan; De Freitas, Jessica; Koutsodendris, Nicole; Chen, Nuo; Wang, Celine; Chang, William; An, Alice; Glicksberg, Benjamin S; Sirota, Marina; Huang, Yadong | Nature aging | 2021 Oct | 36172600 | |
| Multiscale neural gradients reflect transdiagnostic effects of major psychiatric conditions on cortical morphology. | Park, Bo-Yong; Kebets, Valeria; Larivière, Sara; Hettwer, Meike D; Paquola, Casey; van Rooij, Daan; Buitelaar, Jan; Franke, Barbara; Hoogman, Martine; Schmaal, Lianne; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J; Andreassen, Ole A; Ching, Christopher R K; Turner, Jessica A; van Erp, Theo G M; Evans, Alan C; Dagher, Alain; Thomopoulos, Sophia I; Thompson, Paul M; Valk, Sofie L; Kirschner, Matthias; Bernhardt, Boris C | Communications biology | 2022 09 27 | 36168040 | |
| Transcriptome changes in stages of non-alcoholic fatty liver disease. | Aljabban, Jihad; Rohr, Michael; Syed, Saad; Khorfan, Kamal; Borkowski, Vincent; Aljabban, Hisham; Segal, Michael; Mukhtar, Mohamed; Mohammed, Mohammed; Panahiazar, Maryam; Hadley, Dexter; Spengler, Ryan; Spengler, Erin | World journal of hepatology | 2022 Jul 27 | 36158924 | |
| Shape analysis of subcortical structures in obsessive-compulsive disorder and the relationship with comorbid anxiety, depression, and medication use: A meta-analysis by the OCD Brain Imaging Consortium. | Fouche, Jean-Paul; Groenewold, Nynke A; Sevenoaks, Tatum; Heany, Sarah; Lochner, Christine; Alonso, Pino; Batistuzzo, Marcelo C; Cardoner, Narcis; Ching, Christopher R K; de Wit, Stella J; Gutman, Boris; Hoexter, Marcelo Q; Jahanshad, Neda; Kim, Minah; Kwon, Jun Soo; Mataix-Cols, David; Menchon, Jose M; Miguel, Euripedes C; Nakamae, Takashi; Phillips, Mary L; Pujol, Jesus; Sakai, Yuki; Yun, Je-Yeon; Soriano-Mas, Carles; Thompson, Paul M; Yamada, Kei; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J | Brain and behavior | 2022 10 | 36106505 | |
| Deciphering COVID-19 host transcriptomic complexity and variations for therapeutic discovery against new variants. | Xing, Jing; Shankar, Rama; Ko, Meehyun; Zhang, Keke; Zhang, Sulin; Drelich, Aleksandra; Paithankar, Shreya; Chekalin, Eugene; Chua, Mei-Sze; Rajasekaran, Surender; Kent Tseng, Chien-Te; Zheng, Mingyue; Kim, Seungtaek; Chen, Bin | iScience | 2022 Oct 21 | 36093376 | |
| Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future. | Jones, Andrew R; Deutsch, Eric W; Vizcaíno, Juan Antonio | Proteomics | 2022 Sep 08 | 36074795 | |
| Associations of medication with subcortical morphology across the lifespan in OCD: Results from the international ENIGMA Consortium. | Ivanov, Iliyan; Boedhoe, Premika S W; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Arnold, Paul D; Balachander, Srinivas; Baker, Justin T; Banaj, Nerisa; Bargalló, Nuria; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Brem, Silvia; Brennan, Brian P; Buitelaar, Jan; Calvo, Rosa; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Diniz, Juliana B; Ely, Benjamin A; Feusner, Jamie D; Ferreira, Sónia; Fitzgerald, Kate D; Fontaine, Martine; Gruner, Patricia; Hanna, Gregory L; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Ikari, Keisuke; James, Anthony; Jaspers-Fayer, Fern; Jiang, Hongyan; Kathmann, Norbert; Kaufmann, Christian; Kim, Minah; Koch, Kathrin; Kwon, Jun Soo; Lázaro, Luisa; Liu, Yanni; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Morer, Astrid; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika L; Oh, Sanghoon; Perriello, Chris; Piacentini, John C; Picó-Pérez, Maria; Piras, Fabrizio; Piras, Federica; Reddy, Y C Janardhan; Manrique, Daniela Rodriguez; Sakai, Yuki; Shimizu, Eiji; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Tolin, David F; van Rooij, Daan; Veltman, Dick J; van der Werf, Ysbrand D; van Wingen, Guido A; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; Watanabe, Anri; Wolters, Lidewij H; Xu, Xiufeng; Yun, Je-Yeon; Zarei, Mojtaba; Zhang, Fengrui; Zhao, Qing; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A; O'Neill, Joseph; ENIGMA-OCD Working Group | Journal of affective disorders | 2022 12 01 | 36041582 | |
| Structural Brain Correlates of Childhood Inhibited Temperament: An ENIGMA-Anxiety Mega-analysis. | Bas-Hoogendam, Janna Marie; Bernstein, Rachel; Benson, Brenda E; Buss, Kristin A; Gunther, Kelley E; Pérez-Edgar, Koraly; Salum, Giovanni A; Jackowski, Andrea P; Bressan, Rodrigo A; Zugman, André; Degnan, Kathryn A; Filippi, Courtney A; Fox, Nathan A; Henderson, Heather A; Tang, Alva; Zeytinoglu, Selin; Harrewijn, Anita; Hillegers, Manon H J; White, Tonya; van IJzendoorn, Marinus H; Schwartz, Carl E; Felicione, Julia M; DeYoung, Kathryn A; Shackman, Alexander J; Smith, Jason F; Tillman, Rachael M; van den Berg, Yvonne H M; Cillessen, Antonius H N; Roelofs, Karin; Tyborowska, Anna; Hill, Shirley Y; Battaglia, Marco; Tettamanti, Marco; Dougherty, Lea R; Jin, Jingwen; Klein, Daniel N; Leung, Hoi-Chung; Avery, Suzanne N; Blackford, Jennifer Urbano; Clauss, Jacqueline A; Hayden, Elizabeth P; Liu, Pan; Vandermeer, Matthew R J; Goldsmith, H Hill; Planalp, Elizabeth M; Nichols, Thomas E; Thompson, Paul M; Westenberg, P Michiel; van der Wee, Nic J A; Groenewold, Nynke A; Stein, Dan J; Winkler, Anderson M; Pine, Daniel S; ENIGMA-Anxiety Working Group | Journal of the American Academy of Child and Adolescent Psychiatry | 2022 Sep | 36038199 | |
| A Just-In-Time Adaptive intervention (JITAI) for smoking cessation: Feasibility and acceptability findings. | Yang, Min-Jeong; Sutton, Steven K; Hernandez, Laura M; Jones, Sarah R; Wetter, David W; Kumar, Santosh; Vinci, Christine | Addictive behaviors | 2023 Jan | 107467 | 36037610 |
| Sharing Begins at Home: How Continuous and Ubiquitous FAIRness Can Enhance Research Productivity and Data Reuse. | Dempsey, William; Foster, Ian; Fraser, Scott; Kesselman, Carl | Harvard data science review | 2022 | 36035065 | |
| Brain Structure in Acutely Underweight and Partially Weight-Restored Individuals With Anorexia Nervosa: A Coordinated Analysis by the ENIGMA Eating Disorders Working Group. | Walton, Esther; Bernardoni, Fabio; Batury, Victoria-Luise; Bahnsen, Klaas; Larivière, Sara; Abbate-Daga, Giovanni; Andres-Perpiña, Susana; Bang, Lasse; Bischoff-Grethe, Amanda; Brooks, Samantha J; Campbell, Iain C; Cascino, Giammarco; Castro-Fornieles, Josefina; Collantoni, Enrico; D'Agata, Federico; Dahmen, Brigitte; Danner, Unna N; Favaro, Angela; Feusner, Jamie D; Frank, Guido K W; Friederich, Hans-Christoph; Graner, John L; Herpertz-Dahlmann, Beate; Hess, Andreas; Horndasch, Stefanie; Kaplan, Allan S; Kaufmann, Lisa-Katrin; Kaye, Walter H; Khalsa, Sahib S; LaBar, Kevin S; Lavagnino, Luca; Lazaro, Luisa; Manara, Renzo; Miles, Amy E; Milos, Gabriella F; Monteleone, Alessio Maria; Monteleone, Palmiero; Mwangi, Benson; O'Daly, Owen; Pariente, Jose; Roesch, Julie; Schmidt, Ulrike H; Seitz, Jochen; Shott, Megan E; Simon, Joe J; Smeets, Paul A M; Tamnes, Christian K; Tenconi, Elena; Thomopoulos, Sophia I; van Elburg, Annemarie A; Voineskos, Aristotle N; von Polier, Georg G; Wierenga, Christina E; Zucker, Nancy L; Jahanshad, Neda; King, Joseph A; Thompson, Paul M; Berner, Laura A; Ehrlich, Stefan | Biological psychiatry | 2022 11 01 | 36031441 | |
| Genomic surveillance of Salmonella spp. in the Philippines during 2013-2014. | Lagrada, Marietta L; Argimón, Silvia; Borlasa, Janice B; Abad, Jaywardeen P; Gayeta, June M; Masim, Melissa L; Olorosa, Agnettah M; Cohen, Victoria; Jeffrey, Benjamin; Abudahab, Khalil; Sia, Sonia B; Hufano, Charmian M; Stelling, John; Holden, Matthew T G; Aanensen, David M; Carlos, Celia C | Transactions of the Royal Society of Tropical Medicine and Hygiene | 2022 Dec 02 | 1202-1213 | 35999186 |
| Saracatinib, a Selective Src Kinase Inhibitor, Blocks Fibrotic Responses in Preclinical Models of Pulmonary Fibrosis. | Ahangari, Farida; Becker, Christine; Foster, Daniel G; Chioccioli, Maurizio; Nelson, Meghan; Beke, Keriann; Wang, Xing; Justet, Aurelien; Adams, Taylor; Readhead, Benjamin; Meador, Carly; Correll, Kelly; Lili, Loukia N; Roybal, Helen M; Rose, Kadi-Ann; Ding, Shuizi; Barnthaler, Thomas; Briones, Natalie; DeIuliis, Giuseppe; Schupp, Jonas C; Li, Qin; Omote, Norihito; Aschner, Yael; Sharma, Lokesh; Kopf, Katrina W; Magnusson, Björn; Hicks, Ryan; Backmark, Anna; Dela Cruz, Charles S; Rosas, Ivan; Cousens, Leslie P; Dudley, Joel T; Kaminski, Naftali; Downey, Gregory P | American journal of respiratory and critical care medicine | 2022 Dec 15 | 35998281 | |
| Inference of putative cell-type-specific imprinted regulatory elements and genes during human neuronal differentiation. | Liang, Dan; Aygün, Nil; Matoba, Nana; Ideraabdullah, Folami Y; Love, Michael I; Stein, Jason L | Human molecular genetics | 2023 Jan 13 | 402-416 | 35994039 |
| CUF-Links: Continuous and Ubiquitous FAIRness Linkages for reproducible research. | Foster, Ian; Kesselman, Carl | Computer | 2022 Aug | 35979414 | |
| GAWMerge expands GWAS sample size and diversity by combining array-based genotyping and whole-genome sequencing. | Mathur, Ravi; Fang, Fang; Gaddis, Nathan; Hancock, Dana B; Cho, Michael H; Hokanson, John E; Bierut, Laura J; Lutz, Sharon M; Young, Kendra; Smith, Albert V; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Silverman, Edwin K; Page, Grier P; Johnson, Eric O | Communications biology | 2022 08 11 | 35953715 | |
| From cirrhosis to hepatocellular carcinoma: An investigation into hepatitis C viral oncogenesis. | Aljabban, Jihad; Danis, Nilay; Gurakar, Merve; Khorfan, Kamal; Aljabban, Nabeal; Simsek, Cem; Salhi, Hussam; Panahiazar, Maryam; Hadley, Dexter; Gurakar, Ahmet; Saberi, Behnam | Hepatology forum | 2020 Jan | 35949665 | |
| Local molecular and global connectomic contributions to cross-disorder cortical abnormalities. | Hansen, Justine Y; Shafiei, Golia; Vogel, Jacob W; Smart, Kelly; Bearden, Carrie E; Hoogman, Martine; Franke, Barbara; van Rooij, Daan; Buitelaar, Jan; McDonald, Carrie R; Sisodiya, Sanjay M; Schmaal, Lianne; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J; van Erp, Theo G M; Ching, Christopher R K; Andreassen, Ole A; Hajek, Tomas; Opel, Nils; Modinos, Gemma; Aleman, André; van der Werf, Ysbrand; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Carson, Richard E; Dagher, Alain; Misic, Bratislav | Nature communications | 2022 08 10 | 35948562 | |
| Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis. | Tetikol, H Serhat; Turgut, Deniz; Narci, Kubra; Budak, Gungor; Kalay, Ozem; Arslan, Elif; Demirkaya-Budak, Sinem; Dolgoborodov, Alexey; Kabakci-Zorlu, Duygu; Semenyuk, Vladimir; Jain, Amit; Davis-Dusenbery, Brandi N | Nature communications | 2022 Aug 04 | 35927245 | |
| Practical and Efficient in-Enclave Verification of Privacy Compliance. | Liu, Weijie; Wang, Wenhao; Chen, Hongbo; Wang, XiaoFeng; Lu, Yaosong; Chen, Kai; Wang, Xinyu; Shen, Qintao; Chen, Yi; Tang, Haixu | Proceedings. International Conference on Dependable Systems and Networks | 2021 Jun | 35919377 | |
| A comparison of methods to harmonize cortical thickness measurements across scanners and sites. | Sun, Delin; Rakesh, Gopalkumar; Haswell, Courtney C; Logue, Mark; Baird, C Lexi; O'Leary, Erin N; Cotton, Andrew S; Xie, Hong; Tamburrino, Marijo; Chen, Tian; Dennis, Emily L; Jahanshad, Neda; Salminen, Lauren E; Thomopoulos, Sophia I; Rashid, Faisal; Ching, Christopher R K; Koch, Saskia B J; Frijling, Jessie L; Nawijn, Laura; van Zuiden, Mirjam; Zhu, Xi; Suarez-Jimenez, Benjamin; Sierk, Anika; Walter, Henrik; Manthey, Antje; Stevens, Jennifer S; Fani, Negar; van Rooij, Sanne J H; Stein, Murray; Bomyea, Jessica; Koerte, Inga K; Choi, Kyle; van der Werff, Steven J A; Vermeiren, Robert R J M; Herzog, Julia; Lebois, Lauren A M; Baker, Justin T; Olson, Elizabeth A; Straube, Thomas; Korgaonkar, Mayuresh S; Andrew, Elpiniki; Zhu, Ye; Li, Gen; Ipser, Jonathan; Hudson, Anna R; Peverill, Matthew; Sambrook, Kelly; Gordon, Evan; Baugh, Lee; Forster, Gina; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent; Maron-Katz, Adi; du Plessis, Stefan; Disner, Seth G; Davenport, Nicholas; Grupe, Daniel W; Nitschke, Jack B; deRoon-Cassini, Terri A; Fitzgerald, Jacklynn M; Krystal, John H; Levy, Ifat; Olff, Miranda; Veltman, Dick J; Wang, Li; Neria, Yuval; De Bellis, Michael D; Jovanovic, Tanja; Daniels, Judith K; Shenton, Martha; van de Wee, Nic J A; Schmahl, Christian; Kaufman, Milissa L; Rosso, Isabelle M; Sponheim, Scott R; Hofmann, David Bernd; Bryant, Richard A; Fercho, Kelene A; Stein, Dan J; Mueller, Sven C; Hosseini, Bobak; Phan, K Luan; McLaughlin, Katie A; Davidson, Richard J; Larson, Christine L; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Gomaa, Hassaan; Etkin, Amit; Seedat, Soraya; Harpaz-Rotem, Ilan; Liberzon, Israel; van Erp, Theo G M; Quidé, Yann; Wang, Xin; Thompson, Paul M; Morey, Rajendra A | NeuroImage | 2022 11 01 | 35917919 | |
| Correlation Analysis of Variables From the Atherosclerosis Risk in Communities Study. | Mandal, Meisha; Levy, Josh; Ives, Cataia; Hwang, Stephen; Zhou, Yi-Hui; Motsinger-Reif, Alison; Pan, Huaqin; Huggins, Wayne; Hamilton, Carol; Wright, Fred; Edwards, Stephen | Frontiers in pharmacology | 2022 | 35899108 | |
| Longitudinal trajectories of cortical development in 22q11.2 copy number variants and typically developing controls. | Jalbrzikowski, Maria; Lin, Amy; Vajdi, Ariana; Grigoryan, Vardui; Kushan, Leila; Ching, Christopher R K; Schleifer, Charles; Hayes, Rebecca A; Chu, Stephanie A; Sugar, Catherine A; Forsyth, Jennifer K; Bearden, Carrie E | Molecular psychiatry | 2022 Oct | 35896619 | |
| Structural network alterations in focal and generalized epilepsy assessed in a worldwide ENIGMA study follow axes of epilepsy risk gene expression. | Larivière, Sara; Royer, Jessica; Rodríguez-Cruces, Raúl; Paquola, Casey; Caligiuri, Maria Eugenia; Gambardella, Antonio; Concha, Luis; Keller, Simon S; Cendes, Fernando; Yasuda, Clarissa L; Bonilha, Leonardo; Gleichgerrcht, Ezequiel; Focke, Niels K; Domin, Martin; von Podewills, Felix; Langner, Soenke; Rummel, Christian; Wiest, Roland; Martin, Pascal; Kotikalapudi, Raviteja; O'Brien, Terence J; Sinclair, Benjamin; Vivash, Lucy; Desmond, Patricia M; Lui, Elaine; Vaudano, Anna Elisabetta; Meletti, Stefano; Tondelli, Manuela; Alhusaini, Saud; Doherty, Colin P; Cavalleri, Gianpiero L; Delanty, Norman; Kälviäinen, Reetta; Jackson, Graeme D; Kowalczyk, Magdalena; Mascalchi, Mario; Semmelroch, Mira; Thomas, Rhys H; Soltanian-Zadeh, Hamid; Davoodi-Bojd, Esmaeil; Zhang, Junsong; Winston, Gavin P; Griffin, Aoife; Singh, Aditi; Tiwari, Vijay K; Kreilkamp, Barbara A K; Lenge, Matteo; Guerrini, Renzo; Hamandi, Khalid; Foley, Sonya; Rüber, Theodor; Weber, Bernd; Depondt, Chantal; Absil, Julie; Carr, Sarah J A; Abela, Eugenio; Richardson, Mark P; Devinsky, Orrin; Severino, Mariasavina; Striano, Pasquale; Tortora, Domenico; Kaestner, Erik; Hatton, Sean N; Vos, Sjoerd B; Caciagli, Lorenzo; Duncan, John S; Whelan, Christopher D; Thompson, Paul M; Sisodiya, Sanjay M; Bernasconi, Andrea; Labate, Angelo; McDonald, Carrie R; Bernasconi, Neda; Bernhardt, Boris C | Nature communications | 2022 07 27 | 35896547 | |
| Neuroanatomical heterogeneity and homogeneity in individuals at clinical high risk for psychosis. | Baldwin, Helen; Radua, Joaquim; Antoniades, Mathilde; Haas, Shalaila S; Frangou, Sophia; Agartz, Ingrid; Allen, Paul; Andreassen, Ole A; Atkinson, Kimberley; Bachman, Peter; Baeza, Inmaculada; Bartholomeusz, Cali F; Chee, Michael W L; Colibazzi, Tiziano; Cooper, Rebecca E; Corcoran, Cheryl M; Cropley, Vanessa L; Ebdrup, Bjørn H; Fortea, Adriana; Glenthøj, Louise Birkedal; Hamilton, Holly K; Haut, Kristen M; Hayes, Rebecca A; He, Ying; Heekeren, Karsten; Kaess, Michael; Kasai, Kiyoto; Katagiri, Naoyuki; Kim, Minah; Kindler, Jochen; Klaunig, Mallory J; Koike, Shinsuke; Koppel, Alex; Kristensen, Tina D; Bin Kwak, Yoo; Kwon, Jun Soo; Lawrie, Stephen M; Lebedeva, Irina; Lee, Jimmy; Lin, Ashleigh; Loewy, Rachel L; Mathalon, Daniel H; Michel, Chantal; Mizrahi, Romina; Møller, Paul; Nelson, Barnaby; Nemoto, Takahiro; Nordholm, Dorte; Omelchenko, Maria A; Pantelis, Christos; Raghava, Jayachandra M; Røssberg, Jan I; Rössler, Wulf; Salisbury, Dean F; Sasabayashi, Daiki; Schall, Ulrich; Smigielski, Lukasz; Sugranyes, Gisela; Suzuki, Michio; Takahashi, Tsutomu; Tamnes, Christian K; Tang, Jinsong; Theodoridou, Anastasia; Thomopoulos, Sophia I; Tomyshev, Alexander S; Uhlhaas, Peter J; Værnes, Tor G; van Amelsvoort, Therese A M J; Van Erp, Theo G M; Waltz, James A; Westlye, Lars T; Wood, Stephen J; Zhou, Juan H; McGuire, Philip; Thompson, Paul M; Jalbrzikowski, Maria; Hernaus, Dennis; Fusar-Poli, Paolo; ENIGMA Clinical High Risk for Psychosis Working Group | Translational psychiatry | 2022 07 26 | 35882855 | |
| Standardized annotation of translated open reading frames. | Mudge, Jonathan M; Ruiz-Orera, Jorge; Prensner, John R; Brunet, Marie A; Calvet, Ferriol; Jungreis, Irwin; Gonzalez, Jose Manuel; Magrane, Michele; Martinez, Thomas F; Schulz, Jana Felicitas; Yang, Yucheng T; Albà, M Mar; Aspden, Julie L; Baranov, Pavel V; Bazzini, Ariel A; Bruford, Elspeth; Martin, Maria Jesus; Calviello, Lorenzo; Carvunis, Anne-Ruxandra; Chen, Jin; Couso, Juan Pablo; Deutsch, Eric W; Flicek, Paul; Frankish, Adam; Gerstein, Mark; Hubner, Norbert; Ingolia, Nicholas T; Kellis, Manolis; Menschaert, Gerben; Moritz, Robert L; Ohler, Uwe; Roucou, Xavier; Saghatelian, Alan; Weissman, Jonathan S; van Heesch, Sebastiaan | Nature biotechnology | 2022 Jul | 35831657 | |
| Harmonizing PTSD severity scales across instruments and sites. | Kennedy, Eamonn; Dennis, Emily L; Lindsey, Hannah M; deRoon-Cassini, Terri; Du Plessis, Stefan; Fani, Negar; Kaufman, Milissa L; Koen, Nastassja; Larson, Christine L; Laskowitz, Sarah; Lebois, Lauren A M; Morey, Rajendra A; Newsome, Mary R; Palermo, Cori; Pastorek, Nicholas J; Powers, Abigail; Scheibel, Randall; Seedat, Soraya; Seligowski, Antonia; Stein, Dan J; Stevens, Jennifer; Sun, Delin; Thompson, Paul; Troyanskaya, Maya; van Rooij, Sanne J H; Watts, Amanda A; Tomas, Carissa W; Williams, Wright; Hillary, Frank G; Pugh, Mary Jo; Wilde, Elisabeth A; Tate, David F | Neuropsychology | 2022 Jul 07 | 35797175 | |
| Biomedical Literature Mining for Repurposing Laboratory Tests. | Kuusisto, Finn; Kleiman, Ross; Weiss, Jeremy | Methods in molecular biology (Clifton, N.J.) | 2022 | 35713860 | |
| The GA4GH Phenopacket schema defines a computable representation of clinical data. | Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; Callahan, Tiffany J; Chute, Christopher G; Courtot, Mélanie; Danis, Daniel; Elemento, Olivier; Essenwanger, Andrea; Freimuth, Robert R; Gargano, Michael A; Groza, Tudor; Hamosh, Ada; Harris, Nomi L; Kaliyaperumal, Rajaram; Lloyd, Kevin C Kent; Khalifa, Aly; Krawitz, Peter M; Köhler, Sebastian; Laraway, Brian J; Lehväslaiho, Heikki; Matalonga, Leslie; McMurry, Julie A; Metke-Jimenez, Alejandro; Mungall, Christopher J; Munoz-Torres, Monica C; Ogishima, Soichi; Papakonstantinou, Anastasios; Piscia, Davide; Pontikos, Nikolas; Queralt-Rosinach, Núria; Roos, Marco; Sass, Julian; Schofield, Paul N; Seelow, Dominik; Siapos, Anastasios; Smedley, Damian; Smith, Lindsay D; Steinhaus, Robin; Sundaramurthi, Jagadish Chandrabose; Swietlik, Emilia M; Thun, Sylvia; Vasilevsky, Nicole A; Wagner, Alex H; Warner, Jeremy L; Weiland, Claus; GAGH Phenopacket Modeling Consortium; Haendel, Melissa A; Robinson, Peter N | Nature biotechnology | 2022 Jun | 35705716 | |
| Data Analytics of Electronic Health Records to Enhance Care of Coronary Artery Disease in Younger Women with Avoiding Possible Delay in Treatment. | Panahiazar, Maryam; Bishara, Andrew M; Chern, Yorick; Alizadehsani, Roohallah; Latif, Omar S; Hadley, Dexter; Beygui, Ramin E | Studies in health technology and informatics | 2022 Jun 06 | 35673215 | |
| Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. | Ramsbottom, Kerry A; Prakash, Ananth; Riverol, Yasset Perez; Camacho, Oscar Martin; Martin, Maria-Jesus; Vizcaíno, Juan Antonio; Deutsch, Eric W; Jones, Andrew R | Journal of proteome research | 2022 Jul 01 | 35640880 | |
| Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. | Maffei, Chiara; Girard, Gabriel; Schilling, Kurt G; Aydogan, Dogu Baran; Adluru, Nagesh; Zhylka, Andrey; Wu, Ye; Mancini, Matteo; Hamamci, Andac; Sarica, Alessia; Teillac, Achille; Baete, Steven H; Karimi, Davood; Yeh, Fang-Cheng; Yildiz, Mert E; Gholipour, Ali; Bihan-Poudec, Yann; Hiba, Bassem; Quattrone, Andrea; Quattrone, Aldo; Boshkovski, Tommy; Stikov, Nikola; Yap, Pew-Thian; de Luca, Alberto; Pluim, Josien; Leemans, Alexander; Prabhakaran, Vivek; Bendlin, Barbara B; Alexander, Andrew L; Landman, Bennett A; Canales-Rodríguez, Erick J; Barakovic, Muhamed; Rafael-Patino, Jonathan; Yu, Thomas; Rensonnet, Gaëtan; Schiavi, Simona; Daducci, Alessandro; Pizzolato, Marco; Fischi-Gomez, Elda; Thiran, Jean-Philippe; Dai, George; Grisot, Giorgia; Lazovski, Nikola; Puch, Santi; Ramos, Marc; Rodrigues, Paulo; Prčkovska, Vesna; Jones, Robert; Lehman, Julia; Haber, Suzanne N; Yendiki, Anastasia | NeuroImage | 2022 08 15 | 35636227 | |
| Redefining breast cancer subtypes to guide treatment prioritization and maximize response: Predictive biomarkers across 10 cancer therapies. | Wolf, Denise M; Yau, Christina; Wulfkuhle, Julia; Brown-Swigart, Lamorna; Gallagher, Rosa I; Lee, Pei Rong Evelyn; Zhu, Zelos; Magbanua, Mark J; Sayaman, Rosalyn; O'Grady, Nicholas; Basu, Amrita; Delson, Amy; Coppé, Jean Philippe; Lu, Ruixiao; Braun, Jerome; I-SPY2 Investigators; Asare, Smita M; Sit, Laura; Matthews, Jeffrey B; Perlmutter, Jane; Hylton, Nola; Liu, Minetta C; Pohlmann, Paula; Symmans, W Fraser; Rugo, Hope S; Isaacs, Claudine; DeMichele, Angela M; Yee, Douglas; Berry, Donald A; Pusztai, Lajos; Petricoin, Emanuel F; Hirst, Gillian L; Esserman, Laura J; van 't Veer, Laura J | Cancer cell | 2022 06 13 | 35623341 | |
| Defining mitochondrial protein functions through deep multiomic profiling. | Rensvold, Jarred W; Shishkova, Evgenia; Sverchkov, Yuriy; Miller, Ian J; Cetinkaya, Arda; Pyle, Angela; Manicki, Mateusz; Brademan, Dain R; Alanay, Yasemin; Raiman, Julian; Jochem, Adam; Hutchins, Paul D; Peters, Sean R; Linke, Vanessa; Overmyer, Katherine A; Salome, Austin Z; Hebert, Alexander S; Vincent, Catherine E; Kwiecien, Nicholas W; Rush, Matthew J P; Westphall, Michael S; Craven, Mark; Akarsu, Nurten A; Taylor, Robert W; Coon, Joshua J; Pagliarini, David J | Nature | 2022 06 | 35614220 | |
| Data Analytics of Electronic Medical Record to Study Racial Diversities in Cardiovascular Diagnosis and Treatment. | Panahiazar, Maryam; Chern, Yorick; Riojas, Ramon; Latif, Omar S; Hadley, Dexter; Beygui, Ramin E | Studies in health technology and informatics | 2022 May 25 | 35612140 | |
| An Ontology for Cardiothoracic Surgical Education and Clinical Data Analytics. | Panahiazar, Maryam; Chern, Yorick; Riojas, Ramon; Latif, Omar S; Lokala, Usha; Hadley, Dexter; Sheth, Amit; Beygui, Ramin E | Studies in health technology and informatics | 2022 May 25 | 35612107 | |
| Prediction of future healthcare expenses of patients from chest radiographs using deep learning: a pilot study. | Sohn, Jae Ho; Chen, Yixin; Lituiev, Dmytro; Yang, Jaewon; Ordovas, Karen; Hadley, Dexter; Vu, Thienkhai H; Franc, Benjamin L; Seo, Youngho | Scientific reports | 2022 May 18 | 35585177 | |
| Longitudinal Trajectory of the Link Between Ventral Striatum and Depression in Adolescence. | Pan, Pedro Mario; Sato, João R; Paillère Martinot, Marie-Laure; Martinot, Jean-Luc; Artiges, Eric; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Ittermann, Bernd; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Whelan, Robert; Schumann, Gunter; Westwater, Margaret L; Grillon, Christian; Cogo-Moreira, Hugo; Stringaris, Argyris; Ernst, Monique; IMAGEN Consortium | The American journal of psychiatry | 2022 07 | 35582783 | |
| MoCL: Data-driven Molecular Fingerprint via Knowledge-aware Contrastive Learning from Molecular Graph. | Sun, Mengying; Xing, Jing; Wang, Huijun; Chen, Bin; Zhou, Jiayu | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining | 2021 Aug | 35571558 | |
| BD2K Training Coordinating Center's ERuDIte: the Educational Resource Discovery Index for Data Science. | Ambite, José Luis; Fierro, Lily; Gordon, Jonathan; Burns, Gully A; Geigl, Florian; Lerman, Kristina; Van Horn, John D | IEEE transactions on emerging topics in computing | 2021 Jan-Mar | 35548703 | |
| Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation. | Kalyuzhnyy, Anton; Eyers, Patrick A; Eyers, Claire E; Bowler-Barnett, Emily; Martin, Maria J; Sun, Zhi; Deutsch, Eric W; Jones, Andrew R | Journal of proteome research | 2022 06 03 | 35532924 | |
| Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed. | Taub, Margaret A; Conomos, Matthew P; Keener, Rebecca; Iyer, Kruthika R; Weinstock, Joshua S; Yanek, Lisa R; Lane, John; Miller-Fleming, Tyne W; Brody, Jennifer A; Raffield, Laura M; McHugh, Caitlin P; Jain, Deepti; Gogarten, Stephanie M; Laurie, Cecelia A; Keramati, Ali; Arvanitis, Marios; Smith, Albert V; Heavner, Benjamin; Barwick, Lucas; Becker, Lewis C; Bis, Joshua C; Blangero, John; Bleecker, Eugene R; Burchard, Esteban G; Celedón, Juan C; Chang, Yen Pei C; Custer, Brian; Darbar, Dawood; de Las Fuentes, Lisa; DeMeo, Dawn L; Freedman, Barry I; Garrett, Melanie E; Gladwin, Mark T; Heckbert, Susan R; Hidalgo, Bertha A; Irvin, Marguerite R; Islam, Talat; Johnson, W Craig; Kaab, Stefan; Launer, Lenore; Lee, Jiwon; Liu, Simin; Moscati, Arden; North, Kari E; Peyser, Patricia A; Rafaels, Nicholas; Seidman, Christine; Weeks, Daniel E; Wen, Fayun; Wheeler, Marsha M; Williams, L Keoki; Yang, Ivana V; Zhao, Wei; Aslibekyan, Stella; Auer, Paul L; Bowden, Donald W; Cade, Brian E; Chen, Zhanghua; Cho, Michael H; Cupples, L Adrienne; Curran, Joanne E; Daya, Michelle; Deka, Ranjan; Eng, Celeste; Fingerlin, Tasha E; Guo, Xiuqing; Hou, Lifang; Hwang, Shih-Jen; Johnsen, Jill M; Kenny, Eimear E; Levin, Albert M; Liu, Chunyu; Minster, Ryan L; Naseri, Take; Nouraie, Mehdi; Reupena, Muagututi'a Sefuiva; Sabino, Ester C; Smith, Jennifer A; Smith, Nicholas L; Su, Jessica Lasky; Taylor, James G; Telen, Marilyn J; Tiwari, Hemant K; Tracy, Russell P; White, Marquitta J; Zhang, Yingze; Wiggins, Kerri L; Weiss, Scott T; Vasan, Ramachandran S; Taylor, Kent D; Sinner, Moritz F; Silverman, Edwin K; Shoemaker, M Benjamin; Sheu, Wayne H-H; Sciurba, Frank; Schwartz, David A; Rotter, Jerome I; Roden, Daniel; Redline, Susan; Raby, Benjamin A; Psaty, Bruce M; Peralta, Juan M; Palmer, Nicholette D; Nekhai, Sergei; Montgomery, Courtney G; Mitchell, Braxton D; Meyers, Deborah A; McGarvey, Stephen T; NHLBI CARE Network; Mak, Angel Cy; Loos, Ruth Jf; Kumar, Rajesh; Kooperberg, Charles; Konkle, Barbara A; Kelly, Shannon; Kardia, Sharon Lr; Kaplan, Robert; He, Jiang; Gui, Hongsheng; Gilliland, Frank D; Gelb, Bruce D; Fornage, Myriam; Ellinor, Patrick T; de Andrade, Mariza; Correa, Adolfo; Chen, Yii-Der Ida; Boerwinkle, Eric; Barnes, Kathleen C; Ashley-Koch, Allison E; Arnett, Donna K; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Hematology and Hemostasis Working Group; TOPMed Structural Variation Working Group; Laurie, Cathy C; Abecasis, Goncalo; Nickerson, Deborah A; Wilson, James G; Rich, Stephen S; Levy, Daniel; Ruczinski, Ingo; Aviv, Abraham; Blackwell, Thomas W; Thornton, Timothy; O'Connell, Jeff; Cox, Nancy J; Perry, James A; Armanios, Mary; Battle, Alexis; Pankratz, Nathan; Reiner, Alexander P; Mathias, Rasika A | Cell genomics | 2022 Jan 12 | 35530816 | |
| Bayesian causal network modeling suggests adolescent cannabis use accelerates prefrontal cortical thinning. | Owens, Max M; Albaugh, Matthew D; Allgaier, Nicholas; Yuan, Dekang; Robert, Gabriel; Cupertino, Renata B; Spechler, Philip A; Juliano, Anthony; Hahn, Sage; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Mackey, Scott; Schumann, Gunter; Garavan, Hugh; IMAGEN Consortium | Translational psychiatry | 2022 05 06 | 35523763 | |
| Combined Hypothesis Testing on Graphs with Applications to Gene Set Enrichment Analysis. | Wang, Shulei; Yuan, Ming | Journal of the American Statistical Association | 2019 | 35431372 | |
| A model-based approach to assess reproducibility for large-scale high-throughput MRI-based studies. | Jiao, Zeyu; Lai, Yinglei; Kang, Jujiao; Gong, Weikang; Ma, Liang; Jia, Tianye; Xie, Chao; Xiang, Shitong; Cheng, Wei; Heinz, Andreas; Desrivières, Sylvane; Schumann, Gunter; IMAGEN Consortium; Sun, Fengzhu; Feng, Jianfeng | NeuroImage | 2022 07 15 | 35398282 | |
| Differentiable Optimization of Generalized Nondecomposable Functions using Linear Programs. | Meng, Zihang; Mukherjee, Lopamudra; Wu, Yichao; Singh, Vikas; Ravi, Sathya N | Advances in neural information processing systems | 2021 Dec | 35387382 | |
| Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling. | Bailey, Andrew D; Talkish, Jason; Ding, Hongxu; Igel, Haller; Duran, Alejandra; Mantripragada, Shreya; Paten, Benedict; Ares, Manuel | eLife | 2022 Apr 06 | 35384842 | |
| Genetic variants associated with longitudinal changes in brain structure across the lifespan. | Brouwer, Rachel M; Klein, Marieke; Grasby, Katrina L; Schnack, Hugo G; Jahanshad, Neda; Teeuw, Jalmar; Thomopoulos, Sophia I; Sprooten, Emma; Franz, Carol E; Gogtay, Nitin; Kremen, William S; Panizzon, Matthew S; Olde Loohuis, Loes M; Whelan, Christopher D; Aghajani, Moji; Alloza, Clara; Alnæs, Dag; Artiges, Eric; Ayesa-Arriola, Rosa; Barker, Gareth J; Bastin, Mark E; Blok, Elisabet; Bøen, Erlend; Breukelaar, Isabella A; Bright, Joanna K; Buimer, Elizabeth E L; Bülow, Robin; Cannon, Dara M; Ciufolini, Simone; Crossley, Nicolas A; Damatac, Christienne G; Dazzan, Paola; de Mol, Casper L; de Zwarte, Sonja M C; Desrivières, Sylvane; Díaz-Caneja, Covadonga M; Doan, Nhat Trung; Dohm, Katharina; Fröhner, Juliane H; Goltermann, Janik; Grigis, Antoine; Grotegerd, Dominik; Han, Laura K M; Harris, Mathew A; Hartman, Catharina A; Heany, Sarah J; Heindel, Walter; Heslenfeld, Dirk J; Hohmann, Sarah; Ittermann, Bernd; Jansen, Philip R; Janssen, Joost; Jia, Tianye; Jiang, Jiyang; Jockwitz, Christiane; Karali, Temmuz; Keeser, Daniel; Koevoets, Martijn G J C; Lenroot, Rhoshel K; Malchow, Berend; Mandl, René C W; Medel, Vicente; Meinert, Susanne; Morgan, Catherine A; Mühleisen, Thomas W; Nabulsi, Leila; Opel, Nils; de la Foz, Víctor Ortiz-García; Overs, Bronwyn J; Paillère Martinot, Marie-Laure; Redlich, Ronny; Marques, Tiago Reis; Repple, Jonathan; Roberts, Gloria; Roshchupkin, Gennady V; Setiaman, Nikita; Shumskaya, Elena; Stein, Frederike; Sudre, Gustavo; Takahashi, Shun; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; van der Lugt, Aad; van Haren, Neeltje E M; Wardlaw, Joanna M; Wen, Wei; Westeneng, Henk-Jan; Wittfeld, Katharina; Zhu, Alyssa H; Zugman, Andre; Armstrong, Nicola J; Bonfiglio, Gaia; Bralten, Janita; Dalvie, Shareefa; Davies, Gail; Di Forti, Marta; Ding, Linda; Donohoe, Gary; Forstner, Andreas J; Gonzalez-Peñas, Javier; Guimaraes, Joao P O F T; Homuth, Georg; Hottenga, Jouke-Jan; Knol, Maria J; Kwok, John B J; Le Hellard, Stephanie; Mather, Karen A; Milaneschi, Yuri; Morris, Derek W; Nöthen, Markus M; Papiol, Sergi; Rietschel, Marcella; Santoro, Marcos L; Steen, Vidar M; Stein, Jason L; Streit, Fabian; Tankard, Rick M; Teumer, Alexander; van 't Ent, Dennis; van der Meer, Dennis; van Eijk, Kristel R; Vassos, Evangelos; Vázquez-Bourgon, Javier; Witt, Stephanie H; IMAGEN Consortium; Adams, Hieab H H; Agartz, Ingrid; Ames, David; Amunts, Katrin; Andreassen, Ole A; Arango, Celso; Banaschewski, Tobias; Baune, Bernhard T; Belangero, Sintia I; Bokde, Arun L W; Boomsma, Dorret I; Bressan, Rodrigo A; Brodaty, Henry; Buitelaar, Jan K; Cahn, Wiepke; Caspers, Svenja; Cichon, Sven; Crespo-Facorro, Benedicto; Cox, Simon R; Dannlowski, Udo; Elvsåshagen, Torbjørn; Espeseth, Thomas; Falkai, Peter G; Fisher, Simon E; Flor, Herta; Fullerton, Janice M; Garavan, Hugh; Gowland, Penny A; Grabe, Hans J; Hahn, Tim; Heinz, Andreas; Hillegers, Manon; Hoare, Jacqueline; Hoekstra, Pieter J; Ikram, Mohammad A; Jackowski, Andrea P; Jansen, Andreas; Jönsson, Erik G; Kahn, Rene S; Kircher, Tilo; Korgaonkar, Mayuresh S; Krug, Axel; Lemaitre, Herve; Malt, Ulrik F; Martinot, Jean-Luc; McDonald, Colm; Mitchell, Philip B; Muetzel, Ryan L; Murray, Robin M; Nees, Frauke; Nenadić, Igor; Oosterlaan, Jaap; Ophoff, Roel A; Pan, Pedro M; Penninx, Brenda W J H; Poustka, Luise; Sachdev, Perminder S; Salum, Giovanni A; Schofield, Peter R; Schumann, Gunter; Shaw, Philip; Sim, Kang; Smolka, Michael N; Stein, Dan J; Trollor, Julian N; van den Berg, Leonard H; Veldink, Jan H; Walter, Henrik; Westlye, Lars T; Whelan, Robert; White, Tonya; Wright, Margaret J; Medland, Sarah E; Franke, (see original citation for additional authors) | Nature neuroscience | 2022 Apr | 35383335 | |
| Federated analysis of BRCA1 and BRCA2 variation in a Japanese cohort. | Casaletto, James; Parsons, Michael; Markello, Charles; Iwasaki, Yusuke; Momozawa, Yukihide; Spurdle, Amanda B; Cline, Melissa | Cell genomics | 2022 Mar 09 | 35373174 | |
| Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing. | Goenka, Sneha D; Gorzynski, John E; Shafin, Kishwar; Fisk, Dianna G; Pesout, Trevor; Jensen, Tanner D; Monlong, Jean; Chang, Pi-Chuan; Baid, Gunjan; Bernstein, Jonathan A; Christle, Jeffrey W; Dalton, Karen P; Garalde, Daniel R; Grove, Megan E; Guillory, Joseph; Kolesnikov, Alexey; Nattestad, Maria; Ruzhnikov, Maura R Z; Samadi, Mehrzad; Sethia, Ankit; Spiteri, Elizabeth; Wright, Christopher J; Xiong, Katherine; Zhu, Tong; Jain, Miten; Sedlazeck, Fritz J; Carroll, Andrew; Paten, Benedict; Ashley, Euan A | Nature biotechnology | 2022 Jul | 35347328 | |
| Linking complex disease and exposure data-insights from an environmental and occupational health study. | Ives, Cataia; Pan, Huaqin; Edwards, Stephen W; Nelms, Mark; Covert, Hannah; Lichtveld, Maureen Y; Harville, Emily W; Wickliffe, Jeffrey K; Zijlmans, Wilco; Hamilton, Carol M | Journal of exposure science & environmental epidemiology | 2022 Mar 28 | 35347232 | |
| LEARNING TO SYNTHESIZE CORTICAL MORPHOLOGICAL CHANGES USING GRAPH CONDITIONAL VARIATIONAL AUTOENCODER. | Chai, Yaqiong; Liu, Mengting; Duffy, Ben A; Kim, Hosung | Proceedings. IEEE International Symposium on Biomedical Imaging | 2021 Apr | 35330877 | |
| mTeeth: Identifying Brushing Teeth Surfaces Using Wrist-Worn Inertial Sensors. | Akther, Sayma; Saleheen, Nazir; Saha, Mithun; Shetty, Vivek; Kumar, Santosh | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies | 2021 Jun | 35309968 | |
| Remodeling of the Cortical Structural Connectome in Posttraumatic Stress Disorder: Results From the ENIGMA-PGC Posttraumatic Stress Disorder Consortium. | Sun, Delin; Rakesh, Gopalkumar; Clarke-Rubright, Emily K; Haswell, Courtney C; Logue, Mark W; O'Leary, Erin N; Cotton, Andrew S; Xie, Hong; Dennis, Emily L; Jahanshad, Neda; Salminen, Lauren E; Thomopoulos, Sophia I; Rashid, Faisal M; Ching, Christopher R K; Koch, Saskia B J; Frijling, Jessie L; Nawijn, Laura; van Zuiden, Mirjam; Zhu, Xi; Suarez-Jimenez, Benjamin; Sierk, Anika; Walter, Henrik; Manthey, Antje; Stevens, Jennifer S; Fani, Negar; van Rooij, Sanne J H; Stein, Murray B; Bomyea, Jessica; Koerte, Inga; Choi, Kyle; van der Werff, Steven J A; Vermeiren, Robert R J M; Herzog, Julia I; Lebois, Lauren A M; Baker, Justin T; Ressler, Kerry J; Olson, Elizabeth A; Straube, Thomas; Korgaonkar, Mayuresh S; Andrew, Elpiniki; Zhu, Ye; Li, Gen; Ipser, Jonathan; Hudson, Anna R; Peverill, Matthew; Sambrook, Kelly; Gordon, Evan; Baugh, Lee A; Forster, Gina; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent A; Maron-Katz, Adi; du Plessis, Stefan; Disner, Seth G; Davenport, Nicholas D; Grupe, Dan; Nitschke, Jack B; deRoon-Cassini, Terri A; Fitzgerald, Jacklynn; Krystal, John H; Levy, Ifat; Olff, Miranda; Veltman, Dick J; Wang, Li; Neria, Yuval; De Bellis, Michael D; Jovanovic, Tanja; Daniels, Judith K; Shenton, Martha E; van de Wee, Nic J A; Schmahl, Christian; Kaufman, Milissa L; Rosso, Isabelle M; Sponheim, Scott R; Hofmann, David Bernd; Bryant, Richard A; Fercho, Kelene A; Stein, Dan J; Mueller, Sven C; Phan, K Luan; McLaughlin, Katie A; Davidson, Richard J; Larson, Christine; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Gomaa, Hassaan; Etkin, Amit; Seedat, Soraya; Harpaz-Rotem, Ilan; Liberzon, Israel; Wang, Xin; Thompson, Paul M; Morey, Rajendra A | Biological psychiatry. Cognitive neuroscience and neuroimaging | 2022 09 | 35307575 | |
| Long-term Survival after Hematopoietic Cell Transplant for Sickle Cell Disease Compared to the United States Population. | St Martin, Andrew; Hebert, Kyle M; Serret-Larmande, Arnaud; Jouhet, Vianney; Hughes, Emily; Stedman, Jason; DeSain, Thomas; Pillion, Danielle; Lyons, Jessica C; Steinert, Patricia; Avillach, Paul; Eapen, Mary | Transplantation and cellular therapy | 2022 Mar 15 | 35302009 | |
| Scaling Recurrent Models via Orthogonal Approximations in Tensor Trains. | Mehta, Ronak; Chakraborty, Rudrasis; Xiong, Yunyang; Singh, Vikas | Proceedings. IEEE International Conference on Computer Vision | 2019 Oct-Nov | 35291675 | |
| Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. | LeDuc, Richard D; Deutsch, Eric W; Binz, Pierre-Alain; Fellers, Ryan T; Cesnik, Anthony J; Klein, Joshua A; Van Den Bossche, Tim; Gabriels, Ralf; Yalavarthi, Arshika; Perez-Riverol, Yasset; Carver, Jeremy; Bittremieux, Wout; Kawano, Shin; Pullman, Benjamin; Bandeira, Nuno; Kelleher, Neil L; Thomas, Paul M; Vizcaíno, Juan Antonio | Journal of proteome research | 2022 Apr 01 | 35290070 | |
| Age-dependent white matter disruptions after military traumatic brain injury: Multivariate analysis results from ENIGMA brain injury. | Bouchard, Heather C; Sun, Delin; Dennis, Emily L; Newsome, Mary R; Disner, Seth G; Elman, Jeremy; Silva, Annelise; Velez, Carmen; Irimia, Andrei; Davenport, Nicholas D; Sponheim, Scott R; Franz, Carol E; Kremen, William S; Coleman, Michael J; Williams, M Wright; Geuze, Elbert; Koerte, Inga K; Shenton, Martha E; Adamson, Maheen M; Coimbra, Raul; Grant, Gerald; Shutter, Lori; George, Mark S; Zafonte, Ross D; McAllister, Thomas W; Stein, Murray B; Thompson, Paul M; Wilde, Elisabeth A; Tate, David F; Sotiras, Aristeidis; Morey, Rajendra A | Human brain mapping | 2022 Jun 01 | 35289463 | |
| Automatic wound detection and size estimation using deep learning algorithms. | Carrión, Héctor; Jafari, Mohammad; Bagood, Michelle Dawn; Yang, Hsin-Ya; Isseroff, Roslyn Rivkah; Gomez, Marcella | PLoS computational biology | 2022 Mar | 35275923 | |
| Associations of delay discounting and drinking trajectories from ages 14 to 22. | Fröhner, Juliane H; Ripke, Stephan; Jurk, Sarah; Li, Shu-Chen; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Smolka, Michael N; IMAGEN Consortium | Alcoholism, clinical and experimental research | 2022 Apr | 35257381 | |
| Survival of Hydroxyapatite-Coated Versus Non-hydroxyapatite-Coated Total Hip Arthroplasty Implants in a Veteran Population. | Tyagi, Vineet; Harris, Alex H S; Giori, Nicholas J | The Journal of arthroplasty | 2022 06 | 35219818 | |
| Increased expression of SLC25A1/CIC causes an autistic-like phenotype with altered neuron morphology. | Rigby, Michael J; Orefice, Nicola Salvatore; Lawton, Alexis J; Ma, Min; Shapiro, Samantha L; Yi, Sue Y; Dieterich, Inca A; Frelka, Alyssa; Miles, Hannah N; Pearce, Robert A; Yu, John Paul J; Li, Lingjun; Denu, John M; Puglielli, Luigi | Brain : a journal of neurology | 2022 Apr 18 | 35203088 | |
| STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity. | Borba, Joyce V B; Alves, Vinicius M; Braga, Rodolpho C; Korn, Daniel R; Overdahl, Kirsten; Silva, Arthur C; Hall, Steven U S; Overdahl, Erik; Kleinstreuer, Nicole; Strickland, Judy; Allen, David; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, Alexander | Environmental health perspectives | 2022 02 | 35192406 | |
| The thalamus and its subnuclei-a gateway to obsessive-compulsive disorder. | Weeland, Cees J; Kasprzak, Selina; de Joode, Niels T; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Balachander, Srinivas; Banaj, Nerisa; Bargallo, Nuria; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Brecke, Vilde; Brem, Silvia; Cappi, Carolina; Cheng, Yuqi; Cho, Kang Ik K; Costa, Daniel L C; Dallaspezia, Sara; Denys, Damiaan; Eng, Goi Khia; Ferreira, Sónia; Feusner, Jamie D; Fontaine, Martine; Fouche, Jean-Paul; Grazioplene, Rachael G; Gruner, Patricia; He, Mengxin; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Hu, Hao; Jaspers-Fayer, Fern; Kathmann, Norbert; Kaufmann, Christian; Kim, Minah; Koch, Kathrin; Bin Kwak, Yoo; Kwon, Jun Soo; Lazaro, Luisa; Li, Chiang-Shan R; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, Jose M; Minnuzi, Luciano; Moreira, Pedro Silva; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Narayanaswamy, Janardhanan C; Nurmi, Erika L; Ortiz, Ana E; Pariente, Jose C; Piacentini, John; Picó-Pérez, Maria; Piras, Fabrizio; Piras, Federica; Pittenger, Christopher; Reddy, Y C Janardhan; Rodriguez-Manrique, Daniela; Sakai, Yuki; Shimizu, Eiji; Shivakumar, Venkataram; Simpson, Helen Blair; Soreni, Noam; Soriano-Mas, Carles; Sousa, Nuno; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Takahashi, Jumpei; Tanamatis, Tais; Tang, Jinsong; Thorsen, Anders Lillevik; Tolin, David; van der Werf, Ysbrand D; van Marle, Hein; van Wingen, Guido A; Vecchio, Daniela; Venkatasubramanian, G; Walitza, Susanne; Wang, Jicai; Wang, Zhen; Watanabe, Anri; Wolters, Lidewij H; Xu, Xiufeng; Yun, Je-Yeon; Zhao, Qing; ENIGMA OCD Working Group; White, Tonya; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A; Vriend, Chris | Translational psychiatry | 2022 Feb 21 | 35190533 | |
| A Developmental Perspective on Facets of Impulsivity and Brain Activity Correlates From Adolescence to Adulthood. | Kaiser, Anna; Holz, Nathalie E; Banaschewski, Tobias; Baumeister, Sarah; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Millenet, Sabina; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Schwarz, Emanuel; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Brandeis, Daniel; Nees, Frauke; IMAGEN Consortium | Biological psychiatry. Cognitive neuroscience and neuroimaging | 2022 Nov | 35182817 | |
| SLC13A5/sodium-citrate co-transporter overexpression causes disrupted white matter integrity and an autistic-like phenotype. | Rigby, Michael J; Orefice, Nicola Salvatore; Lawton, Alexis J; Ma, Min; Shapiro, Samantha L; Yi, Sue Y; Dieterich, Inca A; Frelka, Alyssa; Miles, Hannah N; Pearce, Robert A; Yu, John Paul J; Li, Lingjun; Denu, John M; Puglielli, Luigi | Brain communications | 2022 Feb | 35146426 | |
| Standardized Integration of Person-Generated Data Into Routine Clinical Care. | Zeng, Billy; Bove, Riley; Carini, Simona; Lee, Jonathan Shing-Jih; Pollak, J P; Schleimer, Erica; Sim, Ida | JMIR mHealth and uHealth | 2022 02 10 | 35142627 | |
| Subtly altered topological asymmetry of brain structural covariance networks in autism spectrum disorder across 43 datasets from the ENIGMA consortium. | Sha, Zhiqiang; van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Bernhardt, Boris; Bolte, Sven; Busatto, Geraldo F; Calderoni, Sara; Calvo, Rosa; Daly, Eileen; Deruelle, Christine; Duan, Meiyu; Duran, Fabio Luis Souza; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Fair, Damien; Fedor, Jennifer; Fitzgerald, Jacqueline; Floris, Dorothea L; Franke, Barbara; Freitag, Christine M; Gallagher, Louise; Glahn, David C; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; King, Joseph A; Lazaro, Luisa; Luna, Beatriz; McGrath, Jane; Medland, Sarah E; Muratori, Filippo; Murphy, Declan G M; Neufeld, Janina; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Pariente, Jose C; Postema, Merel C; Remnelius, Karl Lundin; Retico, Alessandra; Rosa, Pedro Gomes Penteado; Rubia, Katya; Shook, Devon; Tammimies, Kristiina; Taylor, Margot J; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Thompson, Paul M; Fisher, Simon E; Buitelaar, Jan K; Francks, Clyde | Molecular psychiatry | 2022 04 | 35136228 | |
| DUAL-GLOW: Conditional Flow-Based Generative Model for Modality Transfer. | Sun, Haoliang; Mehta, Ronak; Zhou, Hao H; Huang, Zhichun; Johnson, Sterling C; Prabhakaran, Vivek; Singh, Vikas | Proceedings. IEEE International Conference on Computer Vision | 2019 Oct-Nov | 35125977 | |
| On Training Deep 3D CNN Models with Dependent Samples in Neuroimaging. | Xiong, Yunyang; Kim, Hyunwoo J; Tangirala, Bhargav; Mehta, Ronak; Johnson, Sterling C; Singh, Vikas | Information processing in medical imaging : proceedings of the ... conference | 2019 May | 35125834 | |
| LOCALIZING DIFFERENTIALLY EVOLVING COVARIANCE STRUCTURES VIA SCAN STATISTICS. | Mehta, Ronak; Kim, Hyunwoo J; Wang, Shulei; Johnson, Sterling C; Yuan, Ming; Singh, Vikas | Quarterly of applied mathematics | 2019 | 35125524 | |
| Cross disorder comparisons of brain structure in schizophrenia, bipolar disorder, major depressive disorder, and 22q11.2 deletion syndrome: A review of ENIGMA findings. | Cheon, Eun-Jin; Bearden, Carrie E; Sun, Daqiang; Ching, Christopher R K; Andreassen, Ole A; Schmaal, Lianne; Veltman, Dick J; Thomopoulos, Sophia I; Kochunov, Peter; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A; van Erp, Theo G M | Psychiatry and clinical neurosciences | 2022 Feb 04 | 35119167 | |
| The additive impact of cardio-metabolic disorders and psychiatric illnesses on accelerated brain aging. | Ryan, Meghann C; Hong, L Elliot; Hatch, Kathryn S; Gao, Si; Chen, Shuo; Haerian, Krystl; Wang, Jingtao; Goldwaser, Eric L; Du, Xiaoming; Adhikari, Bhim M; Bruce, Heather; Hare, Stephanie; Kvarta, Mark D; Jahanshad, Neda; Nichols, Thomas E; Thompson, Paul M; Kochunov, Peter | Human brain mapping | 2022 Apr 15 | 35112422 | |
| Contraception information on the websites of student health centers in the United States. | Kakar, Venoo; Kulkarni, Anagha; Holschuh, Carrie; Smirnova, Anastasia; Modrek, Sepideh | Contraception | 2022 08 | 35085543 | |
| Mitochondrial DNA variation across 56,434 individuals in gnomAD. | Laricchia, Kristen M; Lake, Nicole J; Watts, Nicholas A; Shand, Megan; Haessly, Andrea; Gauthier, Laura; Benjamin, David; Banks, Eric; Soto, Jose; Garimella, Kiran; Emery, James; Genome Aggregation Database Consortium; Rehm, Heidi L; MacArthur, Daniel G; Tiao, Grace; Lek, Monkol; Mootha, Vamsi K; Calvo, Sarah E | Genome research | 2022 03 | 35074858 | |
| GA4GH: International policies and standards for data sharing across genomic research and healthcare. | Rehm, Heidi L; Page, Angela J H; Smith, Lindsay; Adams, Jeremy B; Alterovitz, Gil; Babb, Lawrence J; Barkley, Maxmillian P; Baudis, Michael; Beauvais, Michael J S; Beck, Tim; Beckmann, Jacques S; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K; Boughtwood, Tiffany F; Bourque, Guillaume; Bowers, Sarion R; Brookes, Anthony J; Brudno, Michael; Brush, Matthew H; Bujold, David; Burdett, Tony; Buske, Orion J; Cabili, Moran N; Cameron, Daniel L; Carroll, Robert J; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P; Chen, Shu Hui; Cherry, J Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L; Cook-Deegan, Robert M; Courtot, Mélanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M; Denisko, Danielle; Doerr, Megan J; Dolman, Lena I; Dove, Edward S; Dursi, L Jonathan; Dyke, Stephanie O M; Eddy, James A; Eilbeck, Karen; Ellrott, Kyle P; Fairley, Susan; Fakhro, Khalid A; Firth, Helen V; Fitzsimons, Michael S; Fiume, Marc; Flicek, Paul; Fore, Ian M; Freeberg, Mallory A; Freimuth, Robert R; Fromont, Lauren A; Fuerth, Jonathan; Gaff, Clara L; Gan, Weiniu; Ghanaim, Elena M; Glazer, David; Green, Robert C; Griffith, Malachi; Griffith, Obi L; Grossman, Robert L; Groza, Tudor; Auvil, Jaime M Guidry; Guigó, Roderic; Gupta, Dipayan; Haendel, Melissa A; Hamosh, Ada; Hansen, David P; Hart, Reece K; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M; Ho, Calvin W L; Hobb, Ashley E; Hoffman, Michael M; Hofmann, Oliver M; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E; Husami, Ammar; Jacobsen, Julius O; Jamuar, Saumya S; Janes, Elizabeth L; Jeanson, Francis; Jené, Aina; Johns, Amber L; Joly, Yann; Jones, Steven J M; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M; Konopko, Melissa A; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F; Linden, Mikael; Liu, Xianglin; Udara Liyanage, Isuru; Lopez, Javier; Lucassen, Anneke M; Lukowski, Michael; Mann, Alice L; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J; Molnár-Gábor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyrönen, Tommi H; O'Connor, Brian D; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A D; Palumbo, Emilio; Parkinson, Helen E; Philippakis, Anthony A; Pizarro, Angel D; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A; Robinson, Peter N; Rodarmer, Kurt W; Rodriguez, Laura Lyman; Rubin, Alan F; Rueda, Manuel; Rushton, Gregory A; Ryan, Rosalyn S; Saunders, Gary I; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C; Skantharajah, Neerjah; Smith, Albert V; Sofia, Heidi J; Spalding, Dylan; Spurdle, Amanda B; Stark, Zornitza; Stein, Lincoln D; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A; Thomson, Alastair A; Thorogood, Adrian; Tickle, Timothy L; Tokunaga, Katsushi; Törnroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F; Viner, Coby; Voisin, Craig; Wagner, Alex H; Wallace, Susan E; Walsh, Brian P; Williams, Marc S; Winkler, Eva C; Wold, Barbara J; Wood, Grant M; Woolley, J Patrick; Yamasaki, Chisato; Yates, Andrew D; Yung, Christina K; Zass, Lyndon J; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan | Cell genomics | 2021 Nov 10 | 35072136 | |
| STRUCTURED CORRELATION DETECTION WITH APPLICATION TO COLOCALIZATION ANALYSIS IN DUAL-CHANNEL FLUORESCENCE MICROSCOPIC IMAGING. | Wang, Shulei; Fan, Jianqing; Pocock, Ginger; Arena, Ellen T; Eliceiri, Kevin W; Yuan, Ming | Statistica Sinica | 2021 Jan | 35046630 | |
| Large-scale diet tracking data reveal disparate associations between food environment and diet. | Althoff, Tim; Nilforoshan, Hamed; Hua, Jenna; Leskovec, Jure | Nature communications | 2022 01 18 | 35042849 | |
| Minimal Information about MHC Multimers (MIAMM). | Vita, Randi; Mody, Apurva; Overton, James A; Buus, Soren; Haley, Stephen T; Sette, Alessandro; Mallajosyula, Vamsee; Davis, Mark M; Long, Dale L; Willis, Richard A; Peters, Bjoern; Altman, John D | Journal of immunology (Baltimore, Md. : 1950) | 2022 02 01 | 35042788 | |
| Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. | Gupta, Parul; Naithani, Sushma; Preece, Justin; Kim, Sunghwan; Cheng, Tiejun; D'Eustachio, Peter; Elser, Justin; Bolton, Evan E; Jaiswal, Pankaj | Methods in molecular biology (Clifton, N.J.) | 2022 | 35037224 | |
| Mapping Complex Brain Torque Components and Their Genetic Architecture and Phenomic Associations in 24,112 Individuals. | Zhao, Lu; Matloff, William; Shi, Yonggang; Cabeen, Ryan P; Toga, Arthur W | Biological psychiatry | 2022 Apr 15 | 35027165 | |
| The microrandomized trial for developing digital interventions: Experimental design and data analysis considerations. | Qian, Tianchen; Walton, Ashley E; Collins, Linda M; Klasnja, Predrag; Lanza, Stephanie T; Nahum-Shani, Inbal; Rabbi, Mashfiqui; Russell, Michael A; Walton, Maureen A; Yoo, Hyesun; Murphy, Susan A | Psychological methods | 2022 Jan 13 | 35025583 | |
| Accurate diagnosis of atopic dermatitis by combining transcriptome and microbiota data with supervised machine learning. | Jiang, Ziyuan; Li, Jiajin; Kong, Nahyun; Kim, Jeong-Hyun; Kim, Bong-Soo; Lee, Min-Jung; Park, Yoon Mee; Lee, So-Yeon; Hong, Soo-Jong; Sul, Jae Hoon | Scientific reports | 2022 Jan 07 | 34997172 | |
| Coupled exoskeleton assistance simplifies control and maintains metabolic benefits: A simulation study. | Bianco, Nicholas A; Franks, Patrick W; Hicks, Jennifer L; Delp, Scott L | PloS one | 2022 | e0261318 | 34986191 |
| Memory-Aware Active Learning in Mobile Sensing Systems. | Ashari, Zhila Esna; Chaytor, Naomi S; Cook, Diane J; Ghasemzadeh, Hassan | IEEE transactions on mobile computing | 2022 Jan 01 | 34970086 | |
| Brain Signatures During Reward Anticipation Predict Persistent Attention-Deficit/Hyperactivity Disorder Symptoms. | Chen, Di; Jia, Tianye; Cheng, Wei; Cao, Miao; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Robbins, T W; Sahakian, Barbara J; Schumann, Gunter; Feng, Jianfeng; IMAGEN Consortium | Journal of the American Academy of Child and Adolescent Psychiatry | 2022 08 | 34954028 | |
| Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders. | Papale, Ligia A; Madrid, Andy; Zhang, Qi; Chen, Kailei; Sak, Lara; Keleş, Sündüz; Alisch, Reid S | Genome research | 2022 Feb | 34949667 | |
| Trauma and posttraumatic stress disorder modulate polygenic predictors of hippocampal and amygdala volume. | Zheng, Yuanchao; Garrett, Melanie E; Sun, Delin; Clarke-Rubright, Emily K; Haswell, Courtney C; Maihofer, Adam X; Elman, Jeremy A; Franz, Carol E; Lyons, Michael J; Kremen, William S; Peverill, Matthew; Sambrook, Kelly; McLaughlin, Katie A; Davenport, Nicholas D; Disner, Seth; Sponheim, Scott R; Andrew, Elpiniki; Korgaonkar, Mayuresh; Bryant, Richard; Varkevisser, Tim; Geuze, Elbert; Coleman, Jonathan; Beckham, Jean C; Kimbrel, Nathan A; Sullivan, Danielle; Miller, Mark; Hayes, Jasmeet; Verfaellie, Mieke; Wolf, Erika; Salat, David; Spielberg, Jeffrey M; Milberg, William; McGlinchey, Regina; Dennis, Emily L; Thompson, Paul M; Medland, Sarah; Jahanshad, Neda; Nievergelt, Caroline M; Ashley-Koch, Allison E; Logue, Mark W; Morey, Rajendra A | Translational psychiatry | 2021 Dec 16 | 34916497 | |
| Pangenomics enables genotyping of known structural variants in 5202 diverse genomes. | Sirén, Jouni; Monlong, Jean; Chang, Xian; Novak, Adam M; Eizenga, Jordan M; Markello, Charles; Sibbesen, Jonas A; Hickey, Glenn; Chang, Pi-Chuan; Carroll, Andrew; Gupta, Namrata; Gabriel, Stacey; Blackwell, Thomas W; Ratan, Aakrosh; Taylor, Kent D; Rich, Stephen S; Rotter, Jerome I; Haussler, David; Garrison, Erik; Paten, Benedict | Science (New York, N.Y.) | 2021 12 17 | 34914532 | |
| Assessment of brain age in posttraumatic stress disorder: Findings from the ENIGMA PTSD and brain age working groups. | Clausen, Ashley N; Fercho, Kelene A; Monsour, Molly; Disner, Seth; Salminen, Lauren; Haswell, Courtney C; Rubright, Emily Clarke; Watts, Amanda A; Buckley, M Nicole; Maron-Katz, Adi; Sierk, Anika; Manthey, Antje; Suarez-Jimenez, Benjamin; Olatunji, Bunmi O; Averill, Christopher L; Hofmann, David; Veltman, Dick J; Olson, Elizabeth A; Li, Gen; Forster, Gina L; Walter, Henrik; Fitzgerald, Jacklynn; Théberge, Jean; Simons, Jeffrey S; Bomyea, Jessica A; Frijling, Jessie L; Krystal, John H; Baker, Justin T; Phan, K Luan; Ressler, Kerry; Han, Laura K M; Nawijn, Laura; Lebois, Lauren A M; Schmaal, Lianne; Densmore, Maria; Shenton, Martha E; van Zuiden, Mirjam; Stein, Murray; Fani, Negar; Simons, Raluca M; Neufeld, Richard W J; Lanius, Ruth; van Rooij, Sanne; Koch, Saskia B J; Bonomo, Serena; Jovanovic, Tanja; deRoon-Cassini, Terri; Ely, Timothy D; Magnotta, Vincent A; He, Xiaofu; Abdallah, Chadi G; Etkin, Amit; Schmahl, Christian; Larson, Christine; Rosso, Isabelle M; Blackford, Jennifer Urbano; Stevens, Jennifer S; Daniels, Judith K; Herzog, Julia; Kaufman, Milissa L; Olff, Miranda; Davidson, Richard J; Sponheim, Scott R; Mueller, Sven C; Straube, Thomas; Zhu, Xi; Neria, Yuval; Baugh, Lee A; Cole, James H; Thompson, Paul M; Morey, Rajendra A | Brain and behavior | 2022 Jan | 34907666 | |
| Characterizing reward system neural trajectories from adolescence to young adulthood. | Cao, Zhipeng; Ottino-Gonzalez, Jonatan; Cupertino, Renata B; Juliano, Anthony; Chaarani, Bader; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Robinson, Lauren; Smolka, Michael N; Walter, Henrik; Winterer, Jeanne; Schumann, Gunter; Whelan, Robert; Mackey, Scott; Garavan, Hugh; IMAGEN consortiu | Developmental cognitive neuroscience | 2021 Dec | 34894615 | |
| Diagnosis of bipolar disorders and body mass index predict clustering based on similarities in cortical thickness-ENIGMA study in 2436 individuals. | McWhinney, Sean R; Abé, Christoph; Alda, Martin; Benedetti, Francesco; Bøen, Erlend; Del Mar Bonnin, Caterina; Borgers, Tiana; Brosch, Katharina; Canales-Rodríguez, Erick J; Cannon, Dara M; Dannlowski, Udo; Diaz-Zuluaga, Ana M; Dietze, Lorielle; Elvsåshagen, Torbjørn; Eyler, Lisa T; Fullerton, Janice M; Goikolea, Jose M; Goltermann, Janik; Grotegerd, Dominik; Haarman, Bartholomeus C M; Hahn, Tim; Howells, Fleur M; Ingvar, Martin; Kircher, Tilo T J; Krug, Axel; Kuplicki, Rayus T; Landén, Mikael; Lemke, Hannah; Liberg, Benny; Lopez-Jaramillo, Carlos; Malt, Ulrik F; Martyn, Fiona M; Mazza, Elena; McDonald, Colm; McPhilemy, Genevieve; Meier, Sandra; Meinert, Susanne; Meller, Tina; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadic, Igor; Opel, Nils; Ophoff, Roel A; Overs, Bronwyn J; Pfarr, Julia-Katharina; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Raduà, Joaquim; Repple, Jonathan; Richter, Maike; Ringwald, Kai G; Roberts, Gloria; Ross, Alex; Salvador, Raymond; Savitz, Jonathan; Schmitt, Simon; Schofield, Peter R; Sim, Kang; Stein, Dan J; Stein, Frederike; Temmingh, Henk S; Thiel, Katharina; Thomopoulos, Sophia I; van Haren, Neeltje E M; Van Gestel, Holly; Vargas, Cristian; Vieta, Eduard; Vreeker, Annabel; Waltemate, Lena; Yatham, Lakshmi N; Ching, Christopher R K; Andreassen, Ole A; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group | Bipolar disorders | 2021 Dec 11 | 34894200 | |
| Predicting brain age based on sleep EEG and DenseNet. | Yook, Soonhyun; Miao, Yizhan; Park, Claire; Park, Hea Ree; Kim, Jinyoung; Lim, Diane C; Yeon Joo, Eun; Kim, Hosung | Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference | 2021 11 | 34891282 | |
| In situ functional cell phenotyping reveals microdomain networks in colorectal cancer recurrence. | Furman, Samantha A; Stern, Andrew M; Uttam, Shikhar; Taylor, D Lansing; Pullara, Filippo; Chennubhotla, S Chakra | Cell reports methods | 2021 Sep 27 | 34888541 | |
| GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. | Petras, Daniel; Phelan, Vanessa V; Acharya, Deepa; Allen, Andrew E; Aron, Allegra T; Bandeira, Nuno; Bowen, Benjamin P; Belle-Oudry, Deirdre; Boecker, Simon; Cummings Jr, Dale A; Deutsch, Jessica M; Fahy, Eoin; Garg, Neha; Gregor, Rachel; Handelsman, Jo; Navarro-Hoyos, Mirtha; Jarmusch, Alan K; Jarmusch, Scott A; Louie, Katherine; Maloney, Katherine N; Marty, Michael T; Meijler, Michael M; Mizrahi, Itzhak; Neve, Rachel L; Northen, Trent R; Molina-Santiago, Carlos; Panitchpakdi, Morgan; Pullman, Benjamin; Puri, Aaron W; Schmid, Robin; Subramaniam, Shankar; Thukral, Monica; Vasquez-Castro, Felipe; Dorrestein, Pieter C; Wang, Mingxun | Nature methods | 2022 02 | 34862502 | |
| Variant interpretation using population databases: Lessons from gnomAD. | Gudmundsson, Sanna; Singer-Berk, Moriel; Watts, Nicholas A; Phu, William; Goodrich, Julia K; Solomonson, Matthew; Genome Aggregation Database Consortium; Rehm, Heidi L; MacArthur, Daniel G; O'Donnell-Luria, Anne | Human mutation | 2021 Dec 02 | 34859531 | |
| Opal: an implementation science tool for machine learning clinical decision support in anesthesia. | Bishara, Andrew; Wong, Andrew; Wang, Linshanshan; Chopra, Manu; Fan, Wudi; Lin, Alan; Fong, Nicholas; Palacharla, Aditya; Spinner, Jon; Armstrong, Rachelle; Pletcher, Mark J; Lituiev, Dmytro; Hadley, Dexter; Butte, Atul | Journal of clinical monitoring and computing | 2022 Oct | 34837585 | |
| Dynamic models of stress-smoking responses based on high-frequency sensor data. | NPJ digital medicine | 2021 Nov 23 | 34815538 | ||
| The reactome pathway knowledgebase 2022. | Gillespie, Marc; Jassal, Bijay; Stephan, Ralf; Milacic, Marija; Rothfels, Karen; Senff-Ribeiro, Andrea; Griss, Johannes; Sevilla, Cristoffer; Matthews, Lisa; Gong, Chuqiao; Deng, Chuan; Varusai, Thawfeek; Ragueneau, Eliot; Haider, Yusra; May, Bruce; Shamovsky, Veronica; Weiser, Joel; Brunson, Timothy; Sanati, Nasim; Beckman, Liam; Shao, Xiang; Fabregat, Antonio; Sidiropoulos, Konstantinos; Murillo, Julieth; Viteri, Guilherme; Cook, Justin; Shorser, Solomon; Bader, Gary; Demir, Emek; Sander, Chris; Haw, Robin; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, Peter | Nucleic acids research | 2022 01 07 | 34788843 | |
| Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures. | Ding, Hongxu; Anastopoulos, Ioannis; Bailey 4th, Andrew D; Stuart, Joshua; Paten, Benedict | Nature communications | 2021 11 11 | 34764310 | |
| Associations of alcohol use, HIV infection, and age with brain white matter microstructure. | Monnig, Mollie A; Gullett, Joseph M; Porges, Eric C; Woods, Adam J; Monti, Peter M; Tashima, Karen; Jahanshad, Neda; Thompson, Paul; Nir, Talia; Cohen, Ronald A | Journal of neurovirology | 2021 Dec | 34750783 | |
| Nyströmformer: A Nystöm-based Algorithm for Approximating Self-Attention. | Xiong, Yunyang; Zeng, Zhanpeng; Chakraborty, Rudrasis; Tan, Mingxing; Fung, Glenn; Li, Yin; Singh, Vikas | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence | 2021 | 34745767 | |
| Comparing empirical kinship derived heritability for imaging genetics traits in the UK biobank and human connectome project. | Gao, Si; Donohue, Brian; Hatch, Kathryn S; Chen, Shuo; Ma, Tianzhou; Ma, Yizhou; Kvarta, Mark D; Bruce, Heather; Adhikari, Bhim M; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Hong, L Elliot; Medland, Sarah E; Ganjgahi, Habib; Nichols, Thomas E; Kochunov, Peter | NeuroImage | 2021 Dec 15 | 34740793 | |
| Ibrutinib Blocks YAP1 Activation and Reverses BRAF Inhibitor Resistance in Melanoma Cells. | Misek, Sean A; Newbury, Patrick A; Chekalin, Evgenii; Paithankar, Shreya; Doseff, Andrea I; Chen, Bin; Gallo, Kathleen A; Neubig, Richard R | Molecular pharmacology | 2022 01 | 34732527 | |
| The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. | Perez-Riverol, Yasset; Bai, Jingwen; Bandla, Chakradhar; García-Seisdedos, David; Hewapathirana, Suresh; Kamatchinathan, Selvakumar; Kundu, Deepti J; Prakash, Ananth; Frericks-Zipper, Anika; Eisenacher, Martin; Walzer, Mathias; Wang, Shengbo; Brazma, Alvis; Vizcaíno, Juan Antonio | Nucleic acids research | 2022 Jan 07 | 34723319 | |
| Knowledge-based approaches to drug discovery for rare diseases. | Alves, Vinicius M; Korn, Daniel; Pervitsky, Vera; Thieme, Andrew; Capuzzi, Stephen J; Baker, Nancy; Chirkova, Rada; Ekins, Sean; Muratov, Eugene N; Hickey, Anthony; Tropsha, Alexander | Drug discovery today | 2022 02 | 34718207 | |
| Global urbanicity is associated with brain and behaviour in young people. | Xu, Jiayuan; Liu, Xiaoxuan; Li, Qiaojun; Goldblatt, Ran; Qin, Wen; Liu, Feng; Chu, Congying; Luo, Qiang; Ing, Alex; Guo, Lining; Liu, Nana; Liu, Huaigui; Huang, Conghong; Cheng, Jingliang; Wang, Meiyun; Geng, Zuojun; Zhu, Wenzhen; Zhang, Bing; Liao, Weihua; Qiu, Shijun; Zhang, Hui; Xu, Xiaojun; Yu, Yongqiang; Gao, Bo; Han, Tong; Cui, Guangbin; Chen, Feng; Xian, Junfang; Li, Jiance; Zhang, Jing; Zuo, Xi-Nian; Wang, Dawei; Shen, Wen; Miao, Yanwei; Yuan, Fei; Lui, Su; Zhang, Xiaochu; Xu, Kai; Zhang, Longjiang; Ye, Zhaoxiang; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Robinson, Lauren; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Winterer, Jeanne; Patrick, Kevin; Calhoun, Vince; Li, Mulin Jun; Liang, Meng; Gong, Peng; Barker, Edward D; Clinton, Nicholas; Marquand, Andre; Yu, Le; Yu, Chunshui; Schumann, Gunter; CHIMGEN; IMAGEN Consortia | Nature human behaviour | 2022 02 | 34711977 | |
| Cortical and subcortical neuroanatomical signatures of schizotypy in 3004 individuals assessed in a worldwide ENIGMA study. | Kirschner, Matthias; Hodzic-Santor, Benazir; Antoniades, Mathilde; Nenadic, Igor; Kircher, Tilo; Krug, Axel; Meller, Tina; Grotegerd, Dominik; Fornito, Alex; Arnatkeviciute, Aurina; Bellgrove, Mark A; Tiego, Jeggan; Dannlowski, Udo; Koch, Katharina; Hülsmann, Carina; Kugel, Harald; Enneking, Verena; Klug, Melissa; Leehr, Elisabeth J; Böhnlein, Joscha; Gruber, Marius; Mehler, David; DeRosse, Pamela; Moyett, Ashley; Baune, Bernhard T; Green, Melissa; Quidé, Yann; Pantelis, Christos; Chan, Raymond; Wang, Yi; Ettinger, Ulrich; Debbané, Martin; Derome, Melodie; Gaser, Christian; Besteher, Bianca; Diederen, Kelly; Spencer, Tom J; Fletcher, Paul; Rössler, Wulf; Smigielski, Lukasz; Kumari, Veena; Premkumar, Preethi; Park, Haeme R P; Wiebels, Kristina; Lemmers-Jansen, Imke; Gilleen, James; Allen, Paul; Kozhuharova, Petya; Marsman, Jan-Bernard; Lebedeva, Irina; Tomyshev, Alexander; Mukhorina, Anna; Kaiser, Stefan; Fett, Anne-Kathrin; Sommer, Iris; Schuite-Koops, Sanne; Paquola, Casey; Larivière, Sara; Bernhardt, Boris; Dagher, Alain; Grant, Phillip; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Aleman, André; Modinos, Gemma | Molecular psychiatry | 2022 Feb | 34707236 | |
| Dissecting the heterogeneous subcortical brain volume of autism spectrum disorder using community detection. | Li, Ting; Hoogman, Martine; Roth Mota, Nina; Buitelaar, Jan K; ENIGMA-ASD working group; Vasquez, Alejandro Arias; Franke, Barbara; van Rooij, Daan | Autism research : official journal of the International Society for Autism Research | 2022 01 | 34704385 | |
| Empowering study of breast cancer data with application of artificial intelligence technology: promises, challenges, and use cases. | Panahiazar, Maryam; Chen, Nolan; Lituiev, Dmytro; Hadley, Dexter | Clinical & experimental metastasis | 2022 Feb | 34697751 | |
| OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. | Jackson, Rebecca; Matentzoglu, Nicolas; Overton, James A; Vita, Randi; Balhoff, James P; Buttigieg, Pier Luigi; Carbon, Seth; Courtot, Melanie; Diehl, Alexander D; Dooley, Damion M; Duncan, William D; Harris, Nomi L; Haendel, Melissa A; Lewis, Suzanna E; Natale, Darren A; Osumi-Sutherland, David; Ruttenberg, Alan; Schriml, Lynn M; Smith, Barry; Stoeckert Jr, Christian J; Vasilevsky, Nicole A; Walls, Ramona L; Zheng, Jie; Mungall, Christopher J; Peters, Bjoern | Database : the journal of biological databases and curation | 2021 10 26 | 34697637 | |
| Advances and Utility of the Human Plasma Proteome. | Deutsch, Eric W; Omenn, Gilbert S; Sun, Zhi; Maes, Michal; Pernemalm, Maria; Palaniappan, Krishnan K; Letunica, Natasha; Vandenbrouck, Yves; Brun, Virginie; Tao, Sheng-Ce; Yu, Xiaobo; Geyer, Philipp E; Ignjatovic, Vera; Moritz, Robert L; Schwenk, Jochen M | Journal of proteome research | 2021 12 03 | 34672606 | |
| Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project. | Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Paik, Young-Ki; Cristea, Ileana M; Corrales, Fernando J; Lindskog, Cecilia; Weintraub, Susan; Roehrl, Michael H A; Liu, Siqi; Bandeira, Nuno; Srivastava, Sudhir; Chen, Yu-Ju; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W | Journal of proteome research | 2021 12 03 | 34670092 | |
| Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans. | Cahill, James A; Armstrong, Joel; Deran, Alden; Khoury, Carolyn J; Paten, Benedict; Haussler, David; Jarvis, Erich D | Genome research | 2021 Nov | 34667117 | |
| SmokingOpp: Detecting the Smoking 'Opportunity' Context Using Mobile Sensors. | Chatterjee, Soujanya; Moreno, Alexander; Lizotte, Steven Lloyd; Akther, Sayma; Ertin, Emre; Fagundes, Christopher P; Lam, Cho; Rehg, James M; Wan, Neng; Wetter, David W; Kumar, Santosh | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies | 2020 Mar | 34651096 | |
| Meta-Analysis illustrates possible role of lipopolysaccharide (LPS)-induced tissue injury in nasopharyngeal carcinoma (NPC) pathogenesis. | Allen, David Z; Aljabban, Jihad; Silverman, Dustin; McDermott, Sean; Wanner, Ross A; Rohr, Michael; Hadley, Dexter; Panahiazar, Maryam | PloS one | 2021 | 34648530 | |
| Estimating time-varying causal excursion effect in mobile health with binary outcomes. | Qian, Tianchen; Yoo, Hyesun; Klasnja, Predrag; Almirall, Daniel; Murphy, Susan A | Biometrika | 2021 Sep | 34629476 | |
| IntelligentPooling: Practical Thompson Sampling for mHealth. | Tomkins, Sabina; Liao, Peng; Klasnja, Predrag; Murphy, Susan | Machine learning | 2021 Sep | 34621105 | |
| Extracting social determinants of health from electronic health records using natural language processing: a systematic review. | Patra, Braja G; Sharma, Mohit M; Vekaria, Veer; Adekkanattu, Prakash; Patterson, Olga V; Glicksberg, Benjamin; Lepow, Lauren A; Ryu, Euijung; Biernacka, Joanna M; Furmanchuk, Al'ona; George, Thomas J; Hogan, William; Wu, Yonghui; Yang, Xi; Bian, Jiang; Weissman, Myrna; Wickramaratne, Priya; Mann, J John; Olfson, Mark; Campion, Thomas R; Weiner, Mark; Pathak, Jyotishman | Journal of the American Medical Informatics Association : JAMIA | 2021 11 25 | 34613399 | |
| The Enhancing NeuroImaging Genetics through Meta-Analysis Consortium: 10 Years of Global Collaborations in Human Brain Mapping. | Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne; Turner, Jessica A; Winkler, Anderson M; Thomopoulos, Sophia I; Egan, Gary F; Kochunov, Peter | Human brain mapping | 2022 Jan | 34612558 | |
| ATLAS: an automated association test using probabilistically linked health records with application to genetic studies. | Zhang, Harrison G; Hejblum, Boris P; Weber, Griffin M; Palmer, Nathan P; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Liao, Katherine P; Kohane, Isaac S; Cai, Tianxi | Journal of the American Medical Informatics Association : JAMIA | 2021 11 25 | 34608931 | |
| Machine Learning Prediction of Liver Allograft Utilization From Deceased Organ Donors Using the National Donor Management Goals Registry. | Bishara, Andrew M; Lituiev, Dmytro S; Adelmann, Dieter; Kothari, Rishi P; Malinoski, Darren J; Nudel, Jacob D; Sally, Mitchell B; Hirose, Ryutaro; Hadley, Dexter D; Niemann, Claus U | Transplantation direct | 2021 Oct | 34604507 | |
| Cortical and subcortical brain structure in generalized anxiety disorder: findings from 28 research sites in the ENIGMA-Anxiety Working Group. | Harrewijn, Anita; Cardinale, Elise M; Groenewold, Nynke A; Bas-Hoogendam, Janna Marie; Aghajani, Moji; Hilbert, Kevin; Cardoner, Narcis; Porta-Casteràs, Daniel; Gosnell, Savannah; Salas, Ramiro; Jackowski, Andrea P; Pan, Pedro M; Salum, Giovanni A; Blair, Karina S; Blair, James R; Hammoud, Mira Z; Milad, Mohammed R; Burkhouse, Katie L; Phan, K Luan; Schroeder, Heidi K; Strawn, Jeffrey R; Beesdo-Baum, Katja; Jahanshad, Neda; Thomopoulos, Sophia I; Buckner, Randy; Nielsen, Jared A; Smoller, Jordan W; Soares, Jair C; Mwangi, Benson; Wu, Mon-Ju; Zunta-Soares, Giovana B; Assaf, Michal; Diefenbach, Gretchen J; Brambilla, Paolo; Maggioni, Eleonora; Hofmann, David; Straube, Thomas; Andreescu, Carmen; Berta, Rachel; Tamburo, Erica; Price, Rebecca B; Manfro, Gisele G; Agosta, Federica; Canu, Elisa; Cividini, Camilla; Filippi, Massimo; Kostić, Milutin; Munjiza Jovanovic, Ana; Alberton, Bianca A V; Benson, Brenda; Freitag, Gabrielle F; Filippi, Courtney A; Gold, Andrea L; Leibenluft, Ellen; Ringlein, Grace V; Werwath, Kathryn E; Zwiebel, Hannah; Zugman, André; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Völzke, Henry; Bülow, Robin; Balderston, Nicholas L; Ernst, Monique; Grillon, Christian; Mujica-Parodi, Lilianne R; van Nieuwenhuizen, Helena; Critchley, Hugo D; Makovac, Elena; Mancini, Matteo; Meeten, Frances; Ottaviani, Cristina; Ball, Tali M; Fonzo, Gregory A; Paulus, Martin P; Stein, Murray B; Gur, Raquel E; Gur, Ruben C; Kaczkurkin, Antonia N; Larsen, Bart; Satterthwaite, Theodore D; Harper, Jennifer; Myers, Michael; Perino, Michael T; Sylvester, Chad M; Yu, Qiongru; Lueken, Ulrike; Veltman, Dick J; Thompson, Paul M; Stein, Dan J; Van der Wee, Nic J A; Winkler, Anderson M; Pine, Daniel S | Translational psychiatry | 2021 10 01 | 34599145 | |
| Individual variation in white matter microstructure is related to better recovery from negative stimuli. | Pedersen, Walker S; Dean, Douglas C; Adluru, Nagesh; Gresham, Lauren K; Lee, Seungbeum D; Kelly, Michael P; Mumford, Jeanette A; Davidson, Richard J; Schaefer, Stacey M | Emotion (Washington, D.C.) | 2022 Mar | 34591511 | |
| Clinical translational neuroimaging of the antioxidant effect of N-acetylcysteine on neural microstructure. | Yi, Sue Y; Barnett, Brian R; Poetzel, McKenzie J; Stowe, Nicholas A; Yu, John-Paul J | Magnetic resonance in medicine | 2022 02 | 34590731 | |
| Genetic and environmental influences of variation in diffusion MRI measures of white matter microstructure. | Luo, Zhan; Adluru, Nagesh; Dean 3rd, Douglas C; Alexander, Andrew L; Goldsmith, H Hill | Brain structure & function | 2022 Jan | 34585302 | |
| Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups. | Huang, Yufang; Liu, Yifan; Steel, Peter A D; Axsom, Kelly M; Lee, John R; Tummalapalli, Sri Lekha; Wang, Fei; Pathak, Jyotishman; Subramanian, Lakshminarayanan; Zhang, Yiye | Journal of the American Medical Informatics Association : JAMIA | 2021 11 25 | 34571540 | |
| Similarity and stability of face network across populations and throughout adolescence and adulthood. | Liao, Zhijie; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Paus, Tomáš; IMAGEN consortium | NeuroImage | 2021 12 01 | 34560271 | |
| Multiethnic genome-wide and HLA association study of total serum IgE level. | Daya, Michelle; Cox, Corey; Acevedo, Nathalie; Boorgula, Meher P; Campbell, Monica; Chavan, Sameer; Cho, Michael H; David, Gloria L; Kachroo, Priyadarshini; Lasky-Su, Jessica; Li, Xingnan; McHugh, Caitlin P; Qiao, Dandi; Rafaels, Nicholas; Beck, Lisa A; Bleecker, Eugene R; Caraballo, Luis; Cupples, Adrienne L; Figueiredo, Camila A; Gallo, Richard L; Hanifin, Jon; Hansel, Nadia N; Hata, Tissa R; Hersh, Craig P; Knight-Madden, Jennifer; Leung, Donald Y M; Guttman-Yassky, Emma; Meyers, Deborah A; O'Connor, George; Ober, Carole; Ong, Peck Y; Ortega, Victor E; Paller, Amy S; Putcha, Nirupama; Reed, Robert M; Schneider, Lynda C; Silverman, Edwin K; Slifka, Mark K; Spergel, Jonathan M; Vasan, Ramachandran S; Viaud-Martinez, Karine A; Watson, Harold; Weiss, Scott T; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Ruczinski, Ingo; Beaty, Terri H; Mathias, Rasika A; Barnes, Kathleen C | The Journal of allergy and clinical immunology | 2021 12 | 34536413 | |
| Personalized HeartSteps: A Reinforcement Learning Algorithm for Optimizing Physical Activity. | Liao, Peng; Greenewald, Kristjan; Klasnja, Predrag; Murphy, Susan | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies | 2020 Mar | 34527853 | |
| Rare variants in the endocytic pathway are associated with Alzheimer's disease, its related phenotypes, and functional consequences. | Zhan, Lingyu; Li, Jiajin; Jew, Brandon; Sul, Jae Hoon | PLoS genetics | 2021 Sep | 34516545 | |
| A meta-analysis of deep brain structural shape and asymmetry abnormalities in 2,833 individuals with schizophrenia compared with 3,929 healthy volunteers via the ENIGMA Consortium. | Gutman, Boris A; van Erp, Theo G M; Alpert, Kathryn; Ching, Christopher R K; Isaev, Dmitry; Ragothaman, Anjani; Jahanshad, Neda; Saremi, Arvin; Zavaliangos-Petropulu, Artemis; Glahn, David C; Shen, Li; Cong, Shan; Alnaes, Dag; Andreassen, Ole Andreas; Doan, Nhat Trung; Westlye, Lars T; Kochunov, Peter; Satterthwaite, Theodore D; Wolf, Daniel H; Huang, Alexander J; Kessler, Charles; Weideman, Andrea; Nguyen, Dana; Mueller, Bryon A; Faziola, Lawrence; Potkin, Steven G; Preda, Adrian; Mathalon, Daniel H; Bustillo, Juan; Calhoun, Vince; Ford, Judith M; Walton, Esther; Ehrlich, Stefan; Ducci, Giuseppe; Banaj, Nerisa; Piras, Fabrizio; Piras, Federica; Spalletta, Gianfranco; Canales-Rodríguez, Erick J; Fuentes-Claramonte, Paola; Pomarol-Clotet, Edith; Radua, Joaquim; Salvador, Raymond; Sarró, Salvador; Dickie, Erin W; Voineskos, Aristotle; Tordesillas-Gutiérrez, Diana; Crespo-Facorro, Benedicto; Setién-Suero, Esther; van Son, Jacqueline Mayoral; Borgwardt, Stefan; Schönborn-Harrisberger, Fabienne; Morris, Derek; Donohoe, Gary; Holleran, Laurena; Cannon, Dara; McDonald, Colm; Corvin, Aiden; Gill, Michael; Filho, Geraldo Busatto; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Lebedeva, Irina; Kaleda, Vasily; Tomyshev, Alexander; Crow, Tim; James, Anthony; Cervenka, Simon; Sellgren, Carl M; Fatouros-Bergman, Helena; Agartz, Ingrid; Howells, Fleur; Stein, Dan J; Temmingh, Henk; Uhlmann, Anne; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margie; Cobia, Derin; Csernansky, John G; Thompson, Paul M; Turner, Jessica A; Wang, Lei | Human brain mapping | 2022 Jan | 34498337 | |
| Open Source Software for Automatic Subregional Assessment of Knee Cartilage Degradation Using Quantitative T2 Relaxometry and Deep Learning. | Thomas, Kevin A; Krzemiński, Dominik; Kidziński, Łukasz; Paul, Rohan; Rubin, Elka B; Halilaj, Eni; Black, Marianne S; Chaudhari, Akshay; Gold, Garry E; Delp, Scott L | Cartilage | 2021 12 | 34496667 | |
| Physarum Powered Differentiable Linear Programming Layers and Applications. | Meng, Zihang; Ravi, Sathya N; Singh, Vikas | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence | 2021 Feb | 34484857 | |
| Signaligner Pro: A Tool to Explore and Annotate Multi-day Raw Accelerometer Data. | Ponnada, Aditya; Cooper, Seth; Tang, Qu; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, Stephen | Proceedings of the ... IEEE International Conference on Pervasive Computing and Communications. IEEE International Conference on Pervasive Computing and Communications | 2021 Mar | 34458663 | |
| CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping. | Wen, Andrew; Rasmussen, Luke V; Stone, Daniel; Liu, Sijia; Kiefer, Rick; Adekkanattu, Prakash; Brandt, Pascal S; Pacheco, Jennifer A; Luo, Yuan; Wang, Fei; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian | AMIA ... Annual Symposium proceedings. AMIA Symposium | 2021 | 34457178 | |
| Integration of NLP2FHIR Representation with Deep Learning Models for EHR Phenotyping: A Pilot Study on Obesity Datasets. | Liu, Sijia; Luo, Yuan; Stone, Daniel; Zong, Nansu; Wen, Andrew; Yu, Yue; Rasmussen, Luke V; Wang, Fei; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian | AMIA ... Annual Symposium proceedings. AMIA Symposium | 2021 | 34457156 | |
| Self-reported oil spill exposure and birth outcomes among southern Louisiana women at the time of the Gulf oil spill: The GROWH study. | Harville, Emily W; Shankar, Arti; Buekens, Pierre; Wickliffe, Jeffrey K; Lichtveld, Maureen Y | International journal of hygiene and environmental health | 2021 Aug | 34450543 | |
| Brain Structure and Degeneration Staging in Friedreich Ataxia: Magnetic Resonance Imaging Volumetrics from the ENIGMA-Ataxia Working Group. | Harding, Ian H; Chopra, Sidhant; Arrigoni, Filippo; Boesch, Sylvia; Brunetti, Arturo; Cocozza, Sirio; Corben, Louise A; Deistung, Andreas; Delatycki, Martin; Diciotti, Stefano; Dogan, Imis; Evangelisti, Stefania; França Jr, Marcondes C; Göricke, Sophia L; Georgiou-Karistianis, Nellie; Gramegna, Laura L; Henry, Pierre-Gilles; Hernandez-Castillo, Carlos R; Hutter, Diane; Jahanshad, Neda; Joers, James M; Lenglet, Christophe; Lodi, Raffaele; Manners, David N; Martinez, Alberto R M; Martinuzzi, Andrea; Marzi, Chiara; Mascalchi, Mario; Nachbauer, Wolfgang; Pane, Chiara; Peruzzo, Denis; Pisharady, Pramod K; Pontillo, Giuseppe; Reetz, Kathrin; Rezende, Thiago J R; Romanzetti, Sandro; Saccà, Francesco; Scherfler, Christoph; Schulz, Jörg B; Stefani, Ambra; Testa, Claudia; Thomopoulos, Sophia I; Timmann, Dagmar; Tirelli, Stefania; Tonon, Caterina; Vavla, Marinela; Egan, Gary F; Thompson, Paul M | Annals of neurology | 2021 10 | 34435700 | |
| INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants. | Dong, Chenyang; Simonett, Shane P; Shin, Sunyoung; Stapleton, Donnie S; Schueler, Kathryn L; Churchill, Gary A; Lu, Leina; Liu, Xiaoxiao; Jin, Fulai; Li, Yan; Attie, Alan D; Keller, Mark P; Keleş, Sündüz | Genome biology | 2021 08 23 | 34425882 | |
| Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis. | Aygün, Nil; Elwell, Angela L; Liang, Dan; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Mory, Jessica; Hadden-Ford, Ellie; Krupa, Oleh; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Love, Michael I; Stein, Jason L | American journal of human genetics | 2021 09 02 | 34416157 | |
| Multi-PheWAS intersection approach to identify sex differences across comorbidities in 59 140 pediatric patients with autism spectrum disorder. | Gutiérrez-Sacristán, Alba; Sáez, Carlos; De Niz, Carlos; Jalali, Niloofar; DeSain, Thomas N; Kumar, Ranjay; Zachariasse, Joany M; Fox, Kathe P; Palmer, Nathan; Kohane, Isaac; Avillach, Paul | Journal of the American Medical Informatics Association : JAMIA | 2022 Jan 12 | 34405856 | |
| Learning Invariant Representations using Inverse Contrastive Loss. | Akash, Aditya Kumar; Lokhande, Vishnu Suresh; Ravi, Sathya N; Singh, Vikas | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence | 2021 Feb | 34405058 | |
| Deep reinforcement learning for modeling human locomotion control in neuromechanical simulation. | Song, Seungmoon; Kidziński, Łukasz; Peng, Xue Bin; Ong, Carmichael; Hicks, Jennifer; Levine, Sergey; Atkeson, Christopher G; Delp, Scott L | Journal of neuroengineering and rehabilitation | 2021 08 16 | 34399772 | |
| A systems-level analysis highlights microglial activation as a modifying factor in common epilepsies. | Altmann, Andre; Ryten, Mina; Di Nunzio, Martina; Ravizza, Teresa; Tolomeo, Daniele; Reynolds, Regina H; Somani, Alyma; Bacigaluppi, Marco; Iori, Valentina; Micotti, Edoardo; Di Sapia, Rossella; Cerovic, Milica; Palma, Eleonora; Ruffolo, Gabriele; Botía, Juan A; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bargallo, Nuria; Bartolini, Emanuele; Bender, Benjamin; Bergo, Felipe P G; Bernardes, Tauana; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris C; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carlson, Chad; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Chen, Jian; Chen, Shuai; Cherubini, Andrea; Concha, Luis; David, Philippe; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Focke, Niels K; Foley, Sonya; Franca, Wendy; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Hibar, Derrek P; Isaev, Dmitry; Jackson, Graeme D; Jahanshad, Neda; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Kwan, Patrick; Labate, Angelo; Langner, Soenke; Lenge, Matteo; Liu, Min; Martin, Pascal; Mascalchi, Mario; Meletti, Stefano; Morita-Sherman, Marcia E; O'Brien, Terence J; Pariente, Jose C; Richardson, Mark P; Rodriguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Striano, Pasquale; Thesen, Thomas; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Wiest, Roland; Yasuda, Clarissa L; Zhang, Guohao; Zhang, Junsong; ENIGMA-Epilepsy Working Group; Leu, Costin; Avbersek, Andreja; EpiPGX Consortium; Thom, Maria; Whelan, Christopher D; Thompson, Paul; McDonald, Carrie R; Vezzani, Annamaria; Sisodiya, Sanjay M | Neuropathology and applied neurobiology | 2022 02 | 34388852 | |
| A merged microarray meta-dataset for transcriptionally profiling colorectal neoplasm formation and progression. | Rohr, Michael; Beardsley, Jordan; Nakkina, Sai Preethi; Zhu, Xiang; Aljabban, Jihad; Hadley, Dexter; Altomare, Deborah | Scientific data | 2021 Aug 11 | 34381057 | |
| Sense2Stop: A micro-randomized trial using wearable sensors to optimize a just-in-time-adaptive stress management intervention for smoking relapse prevention. | Battalio, Samuel L; Conroy, David E; Dempsey, Walter; Liao, Peng; Menictas, Marianne; Murphy, Susan; Nahum-Shani, Inbal; Qian, Tianchen; Kumar, Santosh; Spring, Bonnie | Contemporary clinical trials | 2021 10 | 34375749 | |
| Testing the effectiveness of community-engaged citizen science to promote physical activity, foster healthier neighborhood environments, and advance health equity in vulnerable communities: The Steps for Change randomized controlled trial design and metho | King, Abby C; Campero, Maria I; Garcia, Dulce; Blanco-Velazquez, Isela; Banchoff, Ann; Fierros, Fernando; Escobar, Michele; Cortes, Ana L; Sheats, Jylana L; Hua, Jenna; Chazaro, Aldo; Done, Monica; Espinosa, Patricia Rodriguez; Vuong, Daniel; Ahn, David K | Contemporary clinical trials | 2021 Sep | 34371162 | |
| Inferring and Comparing Game Difficulty Curves using Player-vs-Level Match Data. | Sarkar, Anurag; Cooper, Seth | IEEE Conference on Games 2019 : London, United Kingdom, 20-23 August 2019 | 2019 Aug | 34355222 | |
| Artificial intelligence for classification of temporal lobe epilepsy with ROI-level MRI data: A worldwide ENIGMA-Epilepsy study. | Gleichgerrcht, Ezequiel; Munsell, Brent C; Alhusaini, Saud; Alvim, Marina K M; Bargalló, Núria; Bender, Benjamin; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris; Blackmon, Karen; Caligiuri, Maria Eugenia; Cendes, Fernando; Concha, Luis; Desmond, Patricia M; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Duncan, John S; Focke, Niels K; Gambardella, Antonio; Gong, Bo; Guerrini, Renzo; Hatton, Sean N; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kotikalapudi, Raviteja; Kreilkamp, Barbara A K; Labate, Angelo; Langner, Soenke; Larivière, Sara; Lenge, Matteo; Lui, Elaine; Martin, Pascal; Mascalchi, Mario; Meletti, Stefano; O'Brien, Terence J; Pardoe, Heath R; Pariente, Jose C; Xian Rao, Jun; Richardson, Mark P; Rodríguez-Cruces, Raúl; Rüber, Theodor; Sinclair, Ben; Soltanian-Zadeh, Hamid; Stein, Dan J; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Elisabetta Vaudano, Anna; Vivash, Lucy; von Podewills, Felix; Vos, Sjoerd B; Weber, Bernd; Yao, Yi; Lin Yasuda, Clarissa; Zhang, Junsong; Thompson, Paul M; Sisodiya, Sanjay M; McDonald, Carrie R; Bonilha, Leonardo; ENIGMA-Epilepsy Working Group | NeuroImage. Clinical | 2021 | 34339947 | |
| Indirectly-Supervised Anomaly Detection of Clinically-Meaningful Health Events from Smart Home Data. | Dahmen, Jessamyn; Cook, Diane J | ACM transactions on intelligent systems and technology | 2021 Mar | 34336375 | |
| A Survey of Unsupervised Deep Domain Adaptation. | Wilson, Garrett; Cook, Diane J | ACM transactions on intelligent systems and technology | 2020 Sep | 34336374 | |
| Are Sex Differences in Human Brain Structure Associated With Sex Differences in Behavior? | van Eijk, Liza; Zhu, Dajiang; Couvy-Duchesne, Baptiste; Strike, Lachlan T; Lee, Anthony J; Hansell, Narelle K; Thompson, Paul M; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margaret J; Zietsch, Brendan P | Psychological science | 2021 08 | 34323639 | |
| The mobile assistance for regulating smoking (MARS) micro-randomized trial design protocol. | Nahum-Shani, Inbal; Potter, Lindsey N; Lam, Cho Y; Yap, Jamie; Moreno, Alexander; Stoffel, Rebecca; Wu, Zhenke; Wan, Neng; Dempsey, Walter; Kumar, Santosh; Ertin, Emre; Murphy, Susan A; Rehg, James M; Wetter, David W | Contemporary clinical trials | 2021 11 | 34314855 | |
| Large-scale collaboration in ENIGMA-EEG: A perspective on the meta-analytic approach to link neurological and psychiatric liability genes to electrophysiological brain activity. | Smit, Dirk J A; Andreassen, Ole A; Boomsma, Dorret I; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Elvsåshagen, Torbjørn; Gordon, Reyna L; Harper, Jeremy; Hegerl, Ulrich; Hensch, Tilman; Iacono, William G; Jawinski, Philippe; Jönsson, Erik G; Lu | Brain and behavior | 2021 08 | 34291596 | |
| International Multicenter Analysis of Brain Structure Across Clinical Stages of Parkinson's Disease. | Laansma, Max A; Bright, Joanna K; Al-Bachari, Sarah; Anderson, Tim J; Ard, Tyler; Assogna, Francesca; Baquero, Katherine A; Berendse, Henk W; Blair, Jamie; Cendes, Fernando; Dalrymple-Alford, John C; de Bie, Rob M A; Debove, Ines; Dirkx, Michiel F; Druzgal, Jason; Emsley, Hedley C A; Garraux, Gäetan; Guimarães, Rachel P; Gutman, Boris A; Helmich, Rick C; Klein, Johannes C; Mackay, Clare E; McMillan, Corey T; Melzer, Tracy R; Parkes, Laura M; Piras, Fabrizio; Pitcher, Toni L; Poston, Kathleen L; Rango, Mario; Ribeiro, Letícia F; Rocha, Cristiane S; Rummel, Christian; Santos, Lucas S R; Schmidt, Reinhold; Schwingenschuh, Petra; Spalletta, Gianfranco; Squarcina, Letizia; van den Heuvel, Odile A; Vriend, Chris; Wang, Jiun-Jie; Weintraub, Daniel; Wiest, Roland; Yasuda, Clarissa L; Jahanshad, Neda; Thompson, Paul M; van der Werf, Ysbrand D; ENIGMA-Parkinson's Study | Movement disorders : official journal of the Movement Disorder Society | 2021 Nov | 34288137 | |
| Effects of eight neuropsychiatric copy number variants on human brain structure. | Modenato, Claudia; Kumar, Kuldeep; Moreau, Clara; Martin-Brevet, Sandra; Huguet, Guillaume; Schramm, Catherine; Jean-Louis, Martineau; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Douard, Elise; Thébault-Dagher, Fanny; Côté, Valérie; Charlebois, Audrey-Rose; Deguire, Florence; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurèlie; Richetin, Sonia; 16p11.2 European Consortium; Simons Searchlight Consortium; Melie-Garcia, Lester; Kushan, Leila; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Chakravarty, Mallar; Bzdok, Danilo; Bearden, Carrie E; Draganski, Bogdan; Jacquemont, Sébastien | Translational psychiatry | 2021 07 20 | 34285187 | |
| FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics. | Levinson, Maxwell Adam; Niestroy, Justin; Al Manir, Sadnan; Fairchild, Karen; Lake, Douglas E; Moorman, J Randall; Clark, Timothy | Neuroinformatics | 2021 Jul 15 | 34264488 | |
| Sensing leg movement enhances wearable monitoring of energy expenditure. | Slade, Patrick; Kochenderfer, Mykel J; Delp, Scott L; Collins, Steven H | Nature communications | 2021 07 13 | 34257310 | |
| Haplotype-based membership inference from summary genomic data. | Bu, Diyue; Wang, Xiaofeng; Tang, Haixu | Bioinformatics (Oxford, England) | 2021 07 12 | 34252973 | |
| Published anti-SARS-CoV-2 in vitro hits share common mechanisms of action that synergize with antivirals. | Xing, Jing; Paithankar, Shreya; Liu, Ke; Uhl, Katie; Li, Xiaopeng; Ko, Meehyun; Kim, Seungtaek; Haskins, Jeremy; Chen, Bin | Briefings in bioinformatics | 2021 Jul 09 | 34245241 | |
| Standardization of assay representation in the Ontology for Biomedical Investigations. | Vita, Randi; Zheng, Jie; Jackson, Rebecca; Dooley, Damion; Overton, James A; Miller, Mark A; Berrios, Daniel C; Scheuermann, Richard H; He, Yongqun; McGinty, Hande Küçük; Brochhausen, Mathias; Lin, Aisyah Yu; Jain, Sagar B; Chibucos, Marcus C; Judkins, John; Giglio, Michelle G; Feng, Irene Y; Burns, Gully; Brush, Matthew H; Peters, Bjoern; Stoeckert Jr, Christian J | Database : the journal of biological databases and curation | 2021 07 09 | 34244718 | |
| Quick-start infrastructure for untargeted metabolomics analysis in GNPS. | Leao, Tiago F; Clark, Chase M; Bauermeister, Anelize; Elijah, Emmanuel O; Gentry, Emily C; Husband, Makhai; Oliveira, Michelli F; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C | Nature metabolism | 2021 07 | 34244695 | |
| Causal Inference Gates Corticostriatal Learning. | Dorfman, Hayley M; Tomov, Momchil S; Cheung, Bernice; Clarke, Dennis; Gershman, Samuel J; Hughes, Brent L | The Journal of neuroscience : the official journal of the Society for Neuroscience | 2021 Aug 11 | 34244363 | |
| Regulations and Norms for Reuse of Residual Clinical Biospecimens and Health Data. | Umberfield, Elizabeth E; Kardia, Sharon L R; Jiang, Yun; Thomer, Andrea K; Harris, Marcelline R | Western journal of nursing research | 2021 Jul 08 | 34238076 | |
| A critical overview of computational approaches employed for COVID-19 drug discovery. | Muratov , Eugene N; Amaro , Rommie; Andrade , Carolina H; Brown , Nathan; Ekins , Sean; Fourches , Denis; Isayev , Olexandr; Kozakov , Dima; Medina-Franco , José L; Merz , Kenneth M; Oprea , Tudor I; Poroikov , Vladimir; Schneider , Gisbert; Todd , Matthew H; Varnek , Alexandre; Winkler , David A; Zakharov , Alexey V; Cherkasov , Artem; Tropsha , Alexander | Chemical Society reviews | 2021 Aug 21 | 34212944 | |
| The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets. | Larivière, Sara; Paquola, Casey; Park, Bo-Yong; Royer, Jessica; Wang, Yezhou; Benkarim, Oualid; Vos de Wael, Reinder; Valk, Sofie L; Thomopoulos, Sophia I; Kirschner, Matthias; Lewis, Lindsay B; Evans, Alan C; Sisodiya, Sanjay M; McDonald, Carrie R; Thompson, Paul M; Bernhardt, Boris C | Nature methods | 2021 Jul | 34194050 | |
| Universal Spectrum Identifier for mass spectra. | Deutsch, Eric W; Perez-Riverol, Yasset; Carver, Jeremy; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Binz, Pierre-Alain; Pullman, Benjamin; Sun, Zhi; Shofstahl, Jim; Bittremieux, Wout; Mak, Tytus D; Klein, Joshua; Zhu, Yunping; Lam, Henry; Vizcaíno, Juan Antonio; Bandeira, Nuno | Nature methods | 2021 Jul | 34183830 | |
| Brain Correlates of Suicide Attempt in 18,925 Participants Across 18 International Cohorts. | Campos, Adrian I; Thompson, Paul M; Veltman, Dick J; Pozzi, Elena; van Veltzen, Laura S; Jahanshad, Neda; Adams, Mark J; Baune, Bernhard T; Berger, Klaus; Brosch, Katharina; Bülow, Robin; Connolly, Colm G; Dannlowski, Udo; Davey, Christopher G; de Zubicaray, Greig I; Dima, Danai; Erwin-Grabner, Tracy; Evans, Jennifer W; Fu, Cynthia H Y; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans J; Grotegerd, Dominik; Harris, Matthew A; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Ho, Tiffany C; Kircher, Tilo; Krug, Axel; Lagopoulos, Jim; Lemke, Hannah; McMahon, Katie; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; Medland, Sarah E; Meinert, Susanne; Meller, Tina; Nenadic, Igor; Opel, Nils; Redlich, Ronny; Reneman, Liesbeth; Repple, Jonathan; Sacchet, Matthew D; Schmitt, Simon; Schrantee, Anouk; Sim, Kang; Singh, Aditya; Stein, Frederike; Strike, Lachlan T; van der Wee, Nic J A; van der Werff, Steven J A; Völzke, Henry; Waltemate, Lena; Whalley, Heather C; Wittfeld, Katharina; Wright, Margaret J; Yang, Tony T; Zarate, Carlos A; Schmaal, Lianne; Rentería, Miguel E; ENIGMA-MDD Working Group | Biological psychiatry | 2021 08 15 | 34172278 | |
| ReVibe: A Context-assisted Evening Recall Approach to Improve Self-report Adherence. | Rabbi, Mashfiqui; Li, Katherine; Yan, H Yanna; Hall, Kelly; Klasnja, Predrag; Murphy, Susan | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies | 2019 Dec | 34164595 | |
| Lessons Learned for Identifying and Annotating Permissions in Clinical Consent Forms. | Umberfield, Elizabeth E; Jiang, Yun; Fenton, Susan H; Stansbury, Cooper; Ford, Kathleen; Crist, Kaycee; Kardia, Sharon L R; Thomer, Andrea K; Harris, Marcelline R | Applied clinical informatics | 2021 05 | 34161986 | |
| Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses. | Moon, Changsung; Jin, Chunming; Dong, Xialan; Abrar, Saad; Zheng, Weifan; Chirkova, Rada Y; Tropsha, Alexander | Journal of biomedical informatics | 2021 07 | 34119691 | |
| Automated Detection of Stressful Conversations Using Wearable Physiological and Inertial Sensors. | Bari, Rummana; Rahman, Md Mahbubur; Saleheen, Nazir; Parsons, Megan Battles; Buder, Eugene H; Kumar, Santosh | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies | 2020 Dec | 34099995 | |
| Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging. | Ning, Kaida; Duffy, Ben A; Franklin, Meredith; Matloff, Will; Zhao, Lu; Arzouni, Nibal; Sun, Fengzhu; Toga, Arthur W | Neurobiology of aging | 2021 09 | 34098431 | |
| Multimodal EEG-fMRI: advancing insight into large-scale human brain dynamics. | Chang, Catie; Chen, Jingyuan E | Current opinion in biomedical engineering | 2021 Jun | 34095643 | |
| Optimizing Nondecomposable Data Dependent Regularizers via Lagrangian Reparameterization Offers Significant Performance and Efficiency Gains. | Ravi, Sathya N; Venkatesh, Abhay; Fung, Glenn M; Singh, Vikas | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence | 2020 Jun 16 | 34094697 | |
| Rare variants regulate expression of nearby individual genes in multiple tissues. | Li, Jiajin; Kong, Nahyun; Han, Buhm; Sul, Jae Hoon | PLoS genetics | 2021 06 | 34061836 | |
| Fibroblasts positive for meflin have anti-fibrotic properties in pulmonary fibrosis. | Nakahara, Yoshio; Hashimoto, Naozumi; Sakamoto, Koji; Enomoto, Atsushi; Adams, Taylor S; Yokoi, Toyoharu; Omote, Norihito; Poli, Sergio; Ando, Akira; Wakahara, Keiko; Suzuki, Atsushi; Inoue, Masahide; Hara, Akitoshi; Mizutani, Yasuyuki; Imaizumi, Kazuyoshi; Kawabe, Tsutomu; Rosas, Ivan O; Takahashi, Masahide; Kaminski, Naftali; Hasegawa, Yoshinori | The European respiratory journal | 2021 12 | 34049947 | |
| Interaction Between SNP Genotype and Efficacy of Anastrozole and Exemestane in Early-Stage Breast Cancer. | Cairns, Junmei; Kalari, Krishna R; Ingle, James N; Shepherd, Lois E; Ellis, Matthew J; Goss, Paul E; Barman, Poulami; Carlson, Erin E; Goodnature, Barbara; Goetz, Matthew P; Weinshilboum, Richard M; Gao, Huanyao; Wang, Liewei | Clinical pharmacology and therapeutics | 2021 May 28 | 34048027 | |
| Wearable sensors enable personalized predictions of clinical laboratory measurements. | Dunn, Jessilyn; Kidzinski, Lukasz; Runge, Ryan; Witt, Daniel; Hicks, Jennifer L; Schüssler-Fiorenza Rose, Sophia Miryam; Li, Xiao; Bahmani, Amir; Delp, Scott L; Hastie, Trevor; Snyder, Michael P | Nature medicine | 2021 Jun | 34031607 | |
| What Does the Evidence Say? Models to Help Make Sense of the Biomedical Literature. | Wallace, Byron C | IJCAI : proceedings of the conference | 2019 Aug | 34025086 | |
| KEA3: improved kinase enrichment analysis via data integration. | Kuleshov, Maxim V; Xie, Zhuorui; London, Alexandra B K; Yang, Janice; Evangelista, John Erol; Lachmann, Alexander; Shu, Ingrid; Torre, Denis; Ma'ayan, Avi | Nucleic acids research | 2021 07 02 | 34019655 | |
| Morphological Development Trajectory and Structural Covariance Network of the Human Fetal Cortical Plate during the Early Second Trimester. | Xu, Feifei; Liu, Mengting; Kim, Sharon Y; Ge, Xinting; Zhang, Zhonghe; Tang, Yuchun; Lin, Xiangtao; Toga, Arthur W; Liu, Shuwei; Kim, Hosung | Cerebral cortex (New York, N.Y. : 1991) | 2021 08 26 | 34017979 | |
| Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation. | Liang, Dan; Elwell, Angela L; Aygün, Nil; Krupa, Oleh; Wolter, Justin M; Kyere, Felix A; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Yusupova, Marianna; Garrett, Melanie E; Ashley-Koch, Allison; Crawford, Gregory E; Love, Michael I; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Stein, Jason L | Nature neuroscience | 2021 Jul | 34017130 | |
| The SistematX Web Portal of Natural Products: An Update. | Costa, Renan P O; Lucena, Lucas F; Silva, Lorena Mara A; Zocolo, Guilherme Julião; Herrera-Acevedo, Chonny; Scotti, Luciana; Da-Costa, Fernando Batista; Ionov, Nikita; Poroikov, Vladimir; Muratov, Eugene N; Scotti, Marcus T | Journal of chemical information and modeling | 2021 06 28 | 34014674 | |
| Testing the extreme male brain hypothesis: Is autism spectrum disorder associated with a more male-typical brain? | van Eijk, Liza; Zietsch, Brendan P | Autism research : official journal of the International Society for Autism Research | 2021 08 | 34008924 | |
| Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR): Holistic Approach to Unravel Antibacterial Resistance in East Africa (HATUA). | Asiimwe, Benon B; Kiiru, John; Mshana, Stephen E; Neema, Stella; Keenan, Katherine; Kesby, Mike; Mwanga, Joseph R; Sloan, Derek J; Mmbaga, Blandina T; Smith, V Anne; Gillespie, Stephen H; Lynch, Andy G; Sandeman, Alison; Stelling, John; Elliott, Alison; Aanensen, David M; Kibiki, Gibson E; Sabiiti, Wilber; Holden, Matthew T G; HATUA Consortium | BMJ open | 2021 03 08 | 34006022 | |
| Mobile Health: making the leap to research and clinics. | Ku, Joy P; Sim, Ida | NPJ digital medicine | 2021 May 14 | 33990671 | |
| Interaction of amyloid and tau on cortical microstructure in cognitively unimpaired adults. | Vogt, Nicholas M; Hunt, Jack F V; Adluru, Nagesh; Ma, Yue; Van Hulle, Carol A; Iii, Douglas C Dean; Kecskemeti, Steven R; Chin, Nathaniel A; Carlsson, Cynthia M; Asthana, Sanjay; Johnson, Sterling C; Kollmorgen, Gwendlyn; Batrla, Richard; Wild, Norbert; Buck, Katharina; Zetterberg, Henrik; Alexander, Andrew L; Blennow, Kaj; Bendlin, Barbara B | Alzheimer's & dementia : the journal of the Alzheimer's Association | 2021 May 13 | 33984184 | |
| The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols. | Yuen, Denis; Cabansay, Louise; Duncan, Andrew; Luu, Gary; Hogue, Gregory; Overbeck, Charles; Perez, Natalie; Shands, Walt; Steinberg, David; Reid, Chaz; Olunwa, Nneka; Hansen, Richard; Sheets, Elizabeth; O'Farrell, Ash; Cullion, Kim; O'Connor, Brian D; Paten, Benedict; Stein, Lincoln | Nucleic acids research | 2021 07 02 | 33978761 | |
| Three-dimensional self-attention conditional GAN with spectral normalization for multimodal neuroimaging synthesis. | Lan, Haoyu; Alzheimer Disease Neuroimaging Initiative; Toga, Arthur W; Sepehrband, Farshid | Magnetic resonance in medicine | 2021 09 | 33961321 | |
| fMRI-based detection of alertness predicts behavioral response variability. | Goodale, Sarah E; Ahmed, Nafis; Zhao, Chong; de Zwart, Jacco A; Özbay, Pinar S; Picchioni, Dante; Duyn, Jeff; Englot, Dario J; Morgan, Victoria L; Chang, Catie | eLife | 2021 May 07 | 33960930 | |
| Endocannabinoid Gene × Gene Interaction Association to Alcohol Use Disorder in Two Adolescent Cohorts. | Elkrief, Laurent; Spinney, Sean; Vosberg, Daniel E; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Pausova, Zdenka; Paus, Tomáš; Huguet, Guillaume; Conrod, Patricia; IMAGEN consortium | Frontiers in psychiatry | 2021 | 33959052 | |
| White matter hyperintensities segmentation using the ensemble U-Net with multi-scale highlighting foregrounds. | Park, Gilsoon; Hong, Jinwoo; Duffy, Ben A; Lee, Jong-Min; Kim, Hosung | NeuroImage | 2021 08 15 | 33957235 | |
| A high-quality bonobo genome refines the analysis of hominid evolution. | Mao, Yafei; Catacchio, Claudia R; Hillier, LaDeana W; Porubsky, David; Li, Ruiyang; Sulovari, Arvis; Fernandes, Jason D; Montinaro, Francesco; Gordon, David S; Storer, Jessica M; Haukness, Marina; Fiddes, Ian T; Murali, Shwetha Canchi; Dishuck, Philip C; Hsieh, PingHsun; Harvey, William T; Audano, Peter A; Mercuri, Ludovica; Piccolo, Ilaria; Antonacci, Francesca; Munson, Katherine M; Lewis, Alexandra P; Baker, Carl; Underwood, Jason G; Hoekzema, Kendra; Huang, Tzu-Hsueh; Sorensen, Melanie; Walker, Jerilyn A; Hoffman, Jinna; Thibaud-Nissen, Françoise; Salama, Sofie R; Pang, Andy W C; Lee, Joyce; Hastie, Alex R; Paten, Benedict; Batzer, Mark A; Diekhans, Mark; Ventura, Mario; Eichler, Evan E | Nature | 2021 May 05 | 33953399 | |
| Sex is a defining feature of neuroimaging phenotypes in major brain disorders. | Salminen, Lauren E; Tubi, Meral A; Bright, Joanna; Thomopoulos, Sophia I; Wieand, Alyssa; Thompson, Paul M | Human brain mapping | 2021 May 05 | 33949018 | |
| The digital biomarker discovery pipeline: An open-source software platform for the development of digital biomarkers using mHealth and wearables data. | Bent, Brinnae; Wang, Ke; Grzesiak, Emilia; Jiang, Chentian; Qi, Yuankai; Jiang, Yihang; Cho, Peter; Zingler, Kyle; Ogbeide, Felix Ikponmwosa; Zhao, Arthur; Runge, Ryan; Sim, Ida; Dunn, Jessilyn | Journal of clinical and translational science | 2020 Jul 14 | 33948242 | |
| Exploring JSON-LD as an Executable Definition of FHIR RDF to Enable. | Solbrig, Harold R; Solbrig, Harold R; Prud'hommeaux, Eric; Booth, David; Endle, Cory M; Stone, Daniel J; Jiang, Guoqian | AMIA ... Annual Symposium proceedings. AMIA Symposium | 2020 | 33936490 | |
| Patient-Specific Modeling with Personalized Decision Paths. | Johnson, Adriana; Cooper, Gregory F; Visweswaran, Shyam | AMIA ... Annual Symposium proceedings. AMIA Symposium | 2020 | 33936434 | |
| Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data. | Brown, Katherine A; Sarkar, Indra Neil; Chen, Elizabeth S | AMIA ... Annual Symposium proceedings. AMIA Symposium | 2020 | 33936398 | |
| Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. | Gau, Rémi; Noble, Stephanie; Heuer, Katja; Bottenhorn, Katherine L; Bilgin, Isil P; Yang, Yu-Fang; Huntenburg, Julia M; Bayer, Johanna M M; Bethlehem, Richard A I; Rhoads, Shawn A; Vogelbacher, Christoph; Borghesani, Valentina; Levitis, Elizabeth; Wang, Hao-Ting; Van Den Bossche, Sofie; Kobeleva, Xenia; Legarreta, Jon Haitz; Guay, Samuel; Atay, Selim Melvin; Varoquaux, Gael P; Huijser, Dorien C; Sandström, Malin S; Herholz, Peer; Nastase, Samuel A; Badhwar, AmanPreet; Dumas, Guillaume; Schwab, Simon; Moia, Stefano; Dayan, Michael; Bassil, Yasmine; Brooks, Paula P; Mancini, Matteo; Shine, James M; O'Connor, David; Xie, Xihe; Poggiali, Davide; Friedrich, Patrick; Heinsfeld, Anibal S; Riedl, Lydia; Toro, Roberto; Caballero-Gaudes, César; Eklund, Anders; Garner, Kelly G; Nolan, Christopher R; Demeter, Damion V; Barrios, Fernando A; Merchant, Junaid S; McDevitt, Elizabeth A; Oostenveld, Robert; Craddock, R Cameron; Rokem, Ariel; Doyle, Andrew; Ghosh, Satrajit S; Nikolaidis, Aki; Stanley, Olivia W; Uruñuela, Eneko; Brainhack Community | Neuron | 2021 06 02 | 33932337 | |
| Multi-task Dictionary Learning based on Convolutional Neural Networks for Longitudinal Clinical Score Predictions in Alzheimer's Disease. | Dong, Qunxi; Zhang, Jie; Li, Qingyang; Thompson, Pau M; Caselli, Richard J; Ye, Jieping; Wang, Yalin; Alzheimers Disease Neuroimaging Initiative | Human brain and artificial intelligence : first International Workshop, HBAI 2019, held in conjunction with IJCAI 2019, Macao, China, August 12, 2019, revised selected papers. HBAI (Conference) (1st : 2019 : Macau, China) | 2019 | 33907742 | |
| Altered regional cerebral blood flow in obstructive sleep apnea is associated with sleep fragmentation and oxygen desaturation. | Yan, Lirong; Park, Hea Ree; Kezirian, Eric J; Yook, Soonhyun; Kim, Jae-Hun; Joo, Eun Yeon; Kim, Hosung | Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism | 2021 10 | 33906511 | |
| Reward Processing in Novelty Seekers: A Transdiagnostic Psychiatric Imaging Biomarker. | Qi, Shile; Schumann, Gunter; Bustillo, Juan; Turner, Jessica A; Jiang, Rongtao; Zhi, Dongmei; Fu, Zening; Mayer, Andrew R; Vergara, Victor M; Silva, Rogers F; Iraji, Armin; Chen, Jiayu; Damaraju, Eswar; Ma, Xiaohong; Yang, Xiao; Stevens, Michael; Mathalon, Daniel H; Ford, Judith M; Voyvodic, James; Mueller, Bryon A; Belger, Aysenil; Potkin, Steven G; Preda, Adrian; Zhuo, Chuanjun; Xu, Yong; Chu, Congying; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Calhoun, Vince D; Sui, Jing; IMAGEN Consortium | Biological psychiatry | 2021 Oct 15 | 33875230 | |
| A Full RNS Variant of Approximate Homomorphic Encryption. | Cheon, Jung Hee; Han, Kyoohyung; Kim, Andrey; Kim, Miran; Song, Yongsoo | Selected areas in cryptography : ... annual international workshop, SAC ... proceedings. SAC (Conference) | 2018 | 33870337 | |
| Geometric Brain Surface Network For Brain Cortical Parcellation. | Zhang, Wen; Wang, Yalin | Graph Learning in Medical Imaging : First International Workshop, GLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 17, 2019, Proceedings | 2019 | 33870335 | |
| THE STRATIFIED MICRO-RANDOMIZED TRIAL DESIGN: SAMPLE SIZE CONSIDERATIONS FOR TESTING NESTED CAUSAL EFFECTS OF TIME-VARYING TREATMENTS. | Dempsey, Walter; Liao, Peng; Kumar, Santosh; Murphy, Susan A | The annals of applied statistics | 2020 Jun | 33868539 | |
| Association between body mass index and subcortical brain volumes in bipolar disorders-ENIGMA study in 2735 individuals. | McWhinney, Sean R; Abé, Christoph; Alda, Martin; Benedetti, Francesco; Bøen, Erlend; Del Mar Bonnin, Caterina; Borgers, Tiana; Brosch, Katharina; Canales-Rodríguez, Erick J; Cannon, Dara M; Dannlowski, Udo; Díaz-Zuluaga, Ana M; Elvsåshagen, Torbjørn; Eyler, Lisa T; Fullerton, Janice M; Goikolea, Jose M; Goltermann, Janik; Grotegerd, Dominik; Haarman, Bartholomeus C M; Hahn, Tim; Howells, Fleur M; Ingvar, Martin; Kircher, Tilo T J; Krug, Axel; Kuplicki, Rayus T; Landén, Mikael; Lemke, Hannah; Liberg, Benny; Lopez-Jaramillo, Carlos; Malt, Ulrik F; Martyn, Fiona M; Mazza, Elena; McDonald, Colm; McPhilemy, Genevieve; Meier, Sandra; Meinert, Susanne; Meller, Tina; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadic, Igor; Opel, Nils; Ophoff, Roel A; Overs, Bronwyn J; Pfarr, Julia-Katharina; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Raduà, Joaquim; Repple, Jonathan; Richter, Maike; Ringwald, Kai G; Roberts, Gloria; Salvador, Raymond; Savitz, Jonathan; Schmitt, Simon; Schofield, Peter R; Sim, Kang; Stein, Dan J; Stein, Frederike; Temmingh, Henk S; Thiel, Katharina; van Haren, Neeltje E M; Gestel, Holly Van; Vargas, Cristian; Vieta, Eduard; Vreeker, Annabel; Waltemate, Lena; Yatham, Lakshmi N; Ching, Christopher R K; Andreassen, Ole; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group | Molecular psychiatry | 2021 Nov | 33863996 | |
| Social cognition in 22q11.2 deletion syndrome and idiopathic developmental neuropsychiatric disorders. | Jalal, Rhideeta; Nair, Aarti; Lin, Amy; Eckfeld, Ariel; Kushan, Leila; Zinberg, Jamie; Karlsgodt, Katherine H; Cannon, Tyrone D; Bearden, Carrie E | Journal of neurodevelopmental disorders | 2021 04 17 | 33863277 | |
| Large-Scale Analysis of Visualization Options in a Citizen Science Game. | Miller, Josh Aaron; Lee, Vivian; Cooper, Seth; El-Nasr, Magy Seif | Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play | 2019 Oct | 33860290 | |
| Social Media Activism and Convergence in Tweet Topics After the Initial #MeToo Movement for Two Distinct Groups of Twitter Users. | Baik, Jason M; Nyein, Thet H; Modrek, Sepideh | Journal of interpersonal violence | 2021 Apr 12 | 33840303 | |
| Artificial intelligence decision-making in mobile health. | Menictas, Marianne; Rabbi, Mashfiqui; Klasnja, Predrag; Murphy, Susan | The biochemist | 2019 Oct | 33828355 | |
| Associations Between Exposure to Gestational Diabetes Mellitus In Utero and Daily Energy Intake, Brain Responses to Food Cues, and Adiposity in Children. | Luo, Shan; Angelo, Brendan C; Chow, Ting; Monterosso, John R; Thompson, Paul M; Xiang, Anny H; Page, Kathleen A | Diabetes care | 2021 May | 33827804 | |
| The interaction of child abuse and rs1360780 of the FKBP5 gene is associated with amygdala resting-state functional connectivity in young adults. | Wesarg, Christiane; Veer, Ilya M; Oei, Nicole Y L; Daedelow, Laura S; Lett, Tristram A; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Brühl, Rüdiger; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Heinz, Andreas; Walter, Henrik; IMAGEN Consortium | Human brain mapping | 2021 Jul | 33818852 | |
| Robust Cortical Thickness Morphometry of Neonatal Brain and Systematic Evaluation Using Multi-Site MRI Datasets. | Liu, Mengting; Lepage, Claude; Kim, Sharon Y; Jeon, Seun; Kim, Sun Hyung; Simon, Julia Pia; Tanaka, Nina; Yuan, Shiyu; Islam, Tasfiya; Peng, Bailin; Arutyunyan, Knarik; Surento, Wesley; Kim, Justin; Jahanshad, Neda; Styner, Martin A; Toga, Arthur W; Barkovich, Anthony James; Xu, Duan; Evans, Alan C; Kim, Hosung | Frontiers in neuroscience | 2021 | 33815050 | |
| Off-Policy Estimation of Long-Term Average Outcomes with Applications to Mobile Health. | Liao, Peng; Klasnja, Predrag; Murphy, Susan | Journal of the American Statistical Association | 2021 | 33814653 | |
| Structural and functional brain alterations revealed by neuroimaging in CNV carriers. | Moreau, Clara A; Ching, Christopher Rk; Kumar, Kuldeep; Jacquemont, Sebastien; Bearden, Carrie E | Current opinion in genetics & development | 2021 06 | 33812299 | |
| Multi-Resemblance Multi-Target Low-Rank Coding for Prediction of Cognitive Decline With Longitudinal Brain Images. | Zhang, Jie; Wu, Jianfeng; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin | IEEE transactions on medical imaging | 2021 08 | 33798076 | |
| Characterizing neuroanatomic heterogeneity in people with and without ADHD based on subcortical brain volumes. | Li, Ting; van Rooij, Daan; Roth Mota, Nina; Buitelaar, Jan K; ENIGMA ADHD Working Group; Hoogman, Martine; Arias Vasquez, Alejandro; Franke, Barbara | Journal of child psychology and psychiatry, and allied disciplines | 2021 Mar 30 | 33786843 | |
| Sex differences in neural correlates of common psychopathological symptoms in early adolescence. | Biondo, Francesca; Thunell, Charlotte Nymberg; Xu, Bing; Chu, Congying; Jia, Tianye; Ing, Alex; Quinlan, Erin Burke; Tay, Nicole; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Lemaitre, Hervé; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Barker, Edward D; Schumann, Gunter; IMAGEN Consortium | Psychological medicine | 2022 Oct | 33769238 | |
| Selective morphological and volumetric alterations in the hippocampus of children exposed in utero to gestational diabetes mellitus. | Lynch, Kirsten M; Alves, Jasmin M; Chow, Ting; Clark, Kristi A; Luo, Shan; Toga, Arthur W; Xiang, Anny H; Page, Kathleen A | Human brain mapping | 2021 Mar 25 | 33764653 | |
| A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: A useful proteomic resource for a versatile pathogen. | Reales-Calderón, J A; Sun, Z; Mascaraque, V; Pérez-Navarro, E; Vialás, V; Deutsch, E W; Moritz, R L; Gil, C; Martínez, J L; Molero, G | Journal of proteomics | 2021 05 15 | 33757883 | |
| Predicting Depression Onset in Young People Based on Clinical, Cognitive, Environmental, and Neurobiological Data. | Toenders, Yara J; Kottaram, Akhil; Dinga, Richard; Davey, Christopher G; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Stringaris, Argyris; van Noort, Betteke; Penttilä, Jani; Grimmer, Yvonne; Insensee, Corinna; Becker, Andreas; Schumann, Gunter; IMAGEN Consortium; Schmaal, Lianne | Biological psychiatry. Cognitive neuroscience and neuroimaging | 2022 04 | 33753312 | |
| Analysis of structural brain asymmetries in attention-deficit/hyperactivity disorder in 39 datasets. | Postema, Merel C; Hoogman, Martine; Ambrosino, Sara; Asherson, Philip; Banaschewski, Tobias; Bandeira, Cibele E; Baranov, Alexandr; Bau, Claiton H D; Baumeister, Sarah; Baur-Streubel, Ramona; Bellgrove, Mark A; Biederman, Joseph; Bralten, Janita; Brandeis, Daniel; Brem, Silvia; Buitelaar, Jan K; Busatto, Geraldo F; Castellanos, Francisco X; Cercignani, Mara; Chaim-Avancini, Tiffany M; Chantiluke, Kaylita C; Christakou, Anastasia; Coghill, David; Conzelmann, Annette; Cubillo, Ana I; Cupertino, Renata B; de Zeeuw, Patrick; Doyle, Alysa E; Durston, Sarah; Earl, Eric A; Epstein, Jeffery N; Ethofer, Thomas; Fair, Damien A; Fallgatter, Andreas J; Faraone, Stephen V; Frodl, Thomas; Gabel, Matt C; Gogberashvili, Tinatin; Grevet, Eugenio H; Haavik, Jan; Harrison, Neil A; Hartman, Catharina A; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hohmann, Sarah; Høvik, Marie F; Jernigan, Terry L; Kardatzki, Bernd; Karkashadze, Georgii; Kelly, Clare; Kohls, Gregor; Konrad, Kerstin; Kuntsi, Jonna; Lazaro, Luisa; Lera-Miguel, Sara; Lesch, Klaus-Peter; Louza, Mario R; Lundervold, Astri J; Malpas, Charles B; Mattos, Paulo; McCarthy, Hazel; Namazova-Baranova, Leyla; Nicolau, Rosa; Nigg, Joel T; Novotny, Stephanie E; Oberwelland Weiss, Eileen; O'Gorman Tuura, Ruth L; Oosterlaan, Jaap; Oranje, Bob; Paloyelis, Yannis; Pauli, Paul; Picon, Felipe A; Plessen, Kerstin J; Ramos-Quiroga, J Antoni; Reif, Andreas; Reneman, Liesbeth; Rosa, Pedro G P; Rubia, Katya; Schrantee, Anouk; Schweren, Lizanne J S; Seitz, Jochen; Shaw, Philip; Silk, Tim J; Skokauskas, Norbert; Soliva Vila, Juan C; Stevens, Michael C; Sudre, Gustavo; Tamm, Leanne; Tovar-Moll, Fernanda; van Erp, Theo G M; Vance, Alasdair; Vilarroya, Oscar; Vives-Gilabert, Yolanda; von Polier, Georg G; Walitza, Susanne; Yoncheva, Yuliya N; Zanetti, Marcus V; Ziegler, Georg C; Glahn, David C; Jahanshad, Neda; Medland, Sarah E; ENIGMA ADHD Working Group; Thompson, Paul M; Fisher, Simon E; Franke, Barbara; Francks, Clyde | Journal of child psychology and psychiatry, and allied disciplines | 2021 Oct | 33748971 | |
| The role of maternal BMI on brain food cue reactivity in children: a preliminary study. | Luo, Shan; Angelo, Brendan; Chow, Ting; Monterosso, John R; Xiang, Anny H; Thompson, Paul M; Page, Kathleen A | Brain imaging and behavior | 2021 Mar 18 | 33738669 | |
| Assessment of Extractability and Accuracy of Electronic Health Record Data for Joint Implant Registries. | Giori, Nicholas J; Radin, John; Callahan, Alison; Fries, Jason A; Halilaj, Eni; Ré, Christopher; Delp, Scott L; Shah, Nigam H; Harris, Alex H S | JAMA network open | 2021 03 01 | 33720372 | |
| Predicting future cognitive decline with hyperbolic stochastic coding. | Zhang, Jie; Dong, Qunxi; Shi, Jie; Li, Qingyang; Stonnington, Cynthia M; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin | Medical image analysis | 2021 05 | 33711742 | |
| Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. | Bandeira, Nuno; Deutsch, Eric W; Kohlbacher, Oliver; Martens, Lennart; Vizcaíno, Juan Antonio | Molecular & cellular proteomics : MCP | 2021 | 33711481 | |
| Unsupervised Word Embedding Learning by Incorporating Local and Global Contexts. | Meng, Yu; Huang, Jiaxin; Wang, Guangyuan; Wang, Zihan; Zhang, Chao; Han, Jiawei | Frontiers in big data | 2020 | 33693384 | |
| The emerging clinical role of wearables: factors for successful implementation in healthcare. | Smuck, Matthew; Odonkor, Charles A; Wilt, Jonathan K; Schmidt, Nicolas; Swiernik, Michael A | NPJ digital medicine | 2021 Mar 10 | 33692479 | |
| Published Anti-SARS-CoV-2 In Vitro Hits Share Common Mechanisms of Action that Synergize with Antivirals. | Xing, Jing; Paithankar, Shreya; Liu, Ke; Uhl, Katie; Li, Xiaopeng; Ko, Meehyun; Kim, Seungtaek; Haskins, Jeremy; Chen, Bin | bioRxiv : the preprint server for biology | 2021 Mar 04 | 33688643 | |
| Differential predictors for alcohol use in adolescents as a function of familial risk. | Tschorn, Mira; Lorenz, Robert C; O'Reilly, Paul F; Reichenberg, Abraham; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Heinz, Andreas; Rapp, Michael A; IMAGEN Consortium | Translational psychiatry | 2021 Mar 04 | 33664233 | |
| Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression. | MahmoudianDehkordi, Siamak; Ahmed, Ahmed T; Bhattacharyya, Sudeepa; Han, Xianlin; Baillie, Rebecca A; Arnold, Matthias; Skime, Michelle K; John-Williams, Lisa St; Moseley, M Arthur; Thompson, J Will; Louie, Gregory; Riva-Posse, Patricio; Craighead, W Edward; McDonald, William; Krishnan, Ranga; Rush, A John; Frye, Mark A; Dunlop, Boadie W; Weinshilboum, Richard M; Kaddurah-Daouk, Rima; Mood Disorders Precision Medicine Consortium (MDPMC) | Translational psychiatry | 2021 Mar 02 | 33654056 | |
| Pattern recognition in lymphoid malignancies using CytoGPS and Mercator. | Abrams, Zachary B; Tally, Dwayne G; Zhang, Lin; Coombes, Caitlin E; Payne, Philip R O; Abruzzo, Lynne V; Coombes, Kevin R | BMC bioinformatics | 2021 Mar 01 | 33648439 | |
| Prioritizing Genetic Contributors to Cortical Alterations in 22q11.2 Deletion Syndrome Using Imaging Transcriptomics. | Forsyth, Jennifer K; Mennigen, Eva; Lin, Amy; Sun, Daqiang; Vajdi, Ariana; Kushan-Wells, Leila; Ching, Christopher R K; Villalon-Reina, Julio E; Thompson, Paul M; 22q11.2 ENIGMA Consortium; Bearden, Carrie E | Cerebral cortex (New York, N.Y. : 1991) | 2021 06 10 | 33638978 | |
| Tobacco use and age are associated with different morphologic features of anterior communicating artery aneurysms. | Zhang, Jian; Lai, Pui Man Rosalind; Can, Anil; Mukundan, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose | Scientific reports | 2021 02 26 | 33637879 | |
| Examination of the association between exposure to childhood maltreatment and brain structure in young adults: a machine learning analysis. | Price, Matthew; Albaugh, Matthew; Hahn, Sage; Juliano, Anthony C; Fani, Negar; Brier, Zoe M F; Legrand, Alison C; van Stolk-Cooke, Katherine; Chaarani, Bader; Potter, Alexandra; Peck, Kelly; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology | 2021 10 | 33637836 | |
| Smoking Cessation Using Wearable Sensors: Protocol for a Microrandomized Trial. | Hernandez, Laura M; Wetter, David W; Kumar, Santosh; Sutton, Steven K; Vinci, Christine | JMIR research protocols | 2021 Feb 24 | 33625366 | |
| Dimension constraints improve hypothesis testing for large-scale, graph-associated, brain-image data. | Vo, Tien; Mishra, Akshay; Ithapu, Vamsi; Singh, Vikas; Newton, Michael A | Biostatistics (Oxford, England) | 2022 07 18 | 33616173 | |
| Effects of copy number variations on brain structure and risk for psychiatric illness: Large-scale studies from the ENIGMA working groups on CNVs. | Sønderby, Ida E; Ching, Christopher R K; Thomopoulos, Sophia I; van der Meer, Dennis; Sun, Daqiang; Villalon-Reina, Julio E; Agartz, Ingrid; Amunts, Katrin; Arango, Celso; Armstrong, Nicola J; Ayesa-Arriola, Rosa; Bakker, Geor; Bassett, Anne S; Boomsma, Dorret I; Bülow, Robin; Butcher, Nancy J; Calhoun, Vince D; Caspers, Svenja; Chow, Eva W C; Cichon, Sven; Ciufolini, Simone; Craig, Michael C; Crespo-Facorro, Benedicto; Cunningham, Adam C; Dale, Anders M; Dazzan, Paola; de Zubicaray, Greig I; Djurovic, Srdjan; Doherty, Joanne L; Donohoe, Gary; Draganski, Bogdan; Durdle, Courtney A; Ehrlich, Stefan; Emanuel, Beverly S; Espeseth, Thomas; Fisher, Simon E; Ge, Tian; Glahn, David C; Grabe, Hans J; Gur, Raquel E; Gutman, Boris A; Haavik, Jan; Håberg, Asta K; Hansen, Laura A; Hashimoto, Ryota; Hibar, Derrek P; Holmes, Avram J; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Jalbrzikowski, Maria; Knowles, Emma E M; Kushan, Leila; Linden, David E J; Liu, Jingyu; Lundervold, Astri J; Martin-Brevet, Sandra; Martínez, Kenia; Mather, Karen A; Mathias, Samuel R; McDonald-McGinn, Donna M; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Modenato, Claudia; Monereo Sánchez, Jennifer; Moreau, Clara A; Mühleisen, Thomas W; Paus, Tomas; Pausova, Zdenka; Prieto, Carlos; Ragothaman, Anjanibhargavi; Reinbold, Céline S; Reis Marques, Tiago; Repetto, Gabriela M; Reymond, Alexandre; Roalf, David R; Rodriguez-Herreros, Borja; Rucker, James J; Sachdev, Perminder S; Schmitt, James E; Schofield, Peter R; Silva, Ana I; Stefansson, Hreinn; Stein, Dan J; Tamnes, Christian K; Tordesillas-Gutiérrez, Diana; Ulfarsson, Magnus O; Vajdi, Ariana; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Vázquez-Bourgon, Javier; Vila-Rodriguez, Fidel; Walters, G Bragi; Wen, Wei; Westlye, Lars T; Wittfeld, Katharina; Zackai, Elaine H; Stefánsson, Kári; Jacquemont, Sebastien; Thompson, Paul M; Bearden, Carrie E; Andreassen, Ole A; ENIGMA-CNV Working Group; ENIGMA 22q11.2 Deletion Syndrome Working Group | Human brain mapping | 2022 Jan | 33615640 | |
| Cortical thickness across the lifespan: Data from 17,075 healthy individuals aged 3-90 years. | Frangou, Sophia; Modabbernia, Amirhossein; Williams, Steven C R; Papachristou, Efstathios; Doucet, Gaelle E; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andersson, Micael; Andreasen, Nancy C; Andreassen, Ole A; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Buckner, Randy L; Calhoun, Vincent; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Cervenka, Simon; Chaim-Avancini, Tiffany M; Ching, Christopher R K; Chubar, Victoria; Clark, Vincent P; Conrod, Patricia; Conzelmann, Annette; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; Dale, Anders M; Davey, Christopher; de Geus, Eco J C; de Haan, Lieuwe; de Zubicaray, Greig I; den Braber, Anouk; Dickie, Erin W; Di Giorgio, Annabella; Doan, Nhat Trung; Dørum, Erlend S; Ehrlich, Stefan; Erk, Susanne; Espeseth, Thomas; Fatouros-Bergman, Helena; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Frodl, Thomas; Fuentes-Claramonte, Paola; Glahn, David C; Gotlib, Ian H; Grabe, Hans-Jörgen; Grimm, Oliver; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Rachel E; Gur, Ruben C; Harrison, Ben J; Hartman, Catharine A; Hatton, Sean N; Heinz, Andreas; Heslenfeld, Dirk J; Hibar, Derrek P; Hickie, Ian B; Ho, Beng-Choon; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony; Jernigan, Terry L; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kahn, Rene; Kalnin, Andrew; Kanai, Ryota; Klein, Marieke; Klyushnik, Tatyana P; Koenders, Laura; Koops, Sanne; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lázaro, Luisa; Lebedeva, Irina; Lee, Won Hee; Lesch, Klaus-Peter; Lochner, Christine; Machielsen, Marise W J; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Colm; McDonald, Brenna C; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; Menchón, José M; Medland, Sarah E; Meyer-Lindenberg, Andreas; Naaijen, Jilly; Najt, Pablo; Nakao, Tomohiro; Nordvik, Jan E; Nyberg, Lars; Oosterlaan, Jaap; de la Foz, Víctor Ortiz-García; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Potkin, Steven G; Radua, Joaquim; Reif, Andreas; Rinker, Daniel A; Roffman, Joshua L; Rosa, Pedro G P; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sánchez-Juan, Pascual; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Schmaal, Lianne; Schnell, Knut; Schumann, Gunter; Sim, Kang; Smoller, Jordan W; Sommer, Iris; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Swagerman, Suzanne C; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; Turner, Jessica A; Uhlmann, Anne; van den Heuvel, Odile A; van den Meer, Dennis; van der Wee, Nic J A; van Haren, Neeltje E M; van 't Ent, Dennis; van Erp, Theo G M; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Walton, Esther; Wang, Lei; Wang, Yang; Wassink, Thomas H; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather; Wierenga, Lara M; Wittfeld, Katharina; Wolf, Daniel H; Worker, Amanda; Wright, Margaret J; Yang, Kun; Yoncheva, Yulyia; Zanetti, Marcus V; Ziegler, Georg C; Karolinska Schizophrenia Project (KaSP); Thompson, Paul M; Dima, Danai | Human brain mapping | 2021 Feb 17 | 33595143 | |
| Subcortical volumes across the lifespan: Data from 18,605 healthy individuals aged 3-90 years. | Dima, Danai; Modabbernia, Amirhossein; Papachristou, Efstathios; Doucet, Gaelle E; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andersson, Micael; Andreasen, Nancy C; Andreassen, Ole A; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Buckner, Randy L; Calhoun, Vincent; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Cervenka, Simon; Chaim-Avancini, Tiffany M; Ching, Christopher R K; Chubar, Victoria; Clark, Vincent P; Conrod, Patricia; Conzelmann, Annette; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; Dale, Anders M; Davey, Christopher; de Geus, Eco J C; de Haan, Lieuwe; de Zubicaray, Greig I; den Braber, Anouk; Dickie, Erin W; Di Giorgio, Annabella; Doan, Nhat Trung; Dørum, Erlend S; Ehrlich, Stefan; Erk, Susanne; Espeseth, Thomas; Fatouros-Bergman, Helena; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Frodl, Thomas; Fuentes-Claramonte, Paola; Glahn, David C; Gotlib, Ian H; Grabe, Hans-Jörgen; Grimm, Oliver; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Rachel E; Gur, Ruben C; Harrison, Ben J; Hartman, Catharine A; Hatton, Sean N; Heinz, Andreas; Heslenfeld, Dirk J; Hibar, Derrek P; Hickie, Ian B; Ho, Beng-Choon; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony; Jernigan, Terry L; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kahn, Rene; Kalnin, Andrew; Kanai, Ryota; Klein, Marieke; Klyushnik, Tatyana P; Koenders, Laura; Koops, Sanne; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lázaro, Luisa; Lebedeva, Irina; Lee, Won Hee; Lesch, Klaus-Peter; Lochner, Christine; Machielsen, Marise W J; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Colm; McDonald, Brenna C; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; Menchón, José M; Medland, Sarah E; Meyer-Lindenberg, Andreas; Naaijen, Jilly; Najt, Pablo; Nakao, Tomohiro; Nordvik, Jan E; Nyberg, Lars; Oosterlaan, Jaap; de la Foz, Víctor Ortiz-García; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Potkin, Steven G; Radua, Joaquim; Reif, Andreas; Rinker, Daniel A; Roffman, Joshua L; Rosa, Pedro G P; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sánchez-Juan, Pascual; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Schmaal, Lianne; Schnell, Knut; Schumann, Gunter; Sim, Kang; Smoller, Jordan W; Sommer, Iris; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Swagerman, Suzanne C; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; Turner, Jessica A; Uhlmann, Anne; van den Heuvel, Odile A; van den Meer, Dennis; van der Wee, Nic J A; van Haren, Neeltje E M; Van't Ent, Dennis; van Erp, Theo G M; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Walton, Esther; Wang, Lei; Wang, Yang; Wassink, Thomas H; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather; Wierenga, Lara M; Williams, Steven C R; Wittfeld, Katharina; Wolf, Daniel H; Worker, Amanda; Wright, Margaret J; Yang, Kun; Yoncheva, Yulyia; Zanetti, Marcus V; Ziegler, Georg C; Thompson, Paul M; Frangou, Sophia; Karolinska Schizophrenia Project (KaSP) | Human brain mapping | 2021 Feb 11 | 33570244 | |
| Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study. | Emad, Amin; Sinha, Saurabh | NPJ systems biology and applications | 2021 Feb 08 | 33558504 | |
| Neural network involving medial orbitofrontal cortex and dorsal periaqueductal gray regulation in human alcohol abuse. | Jia, Tianye; Xie, Chao; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Robbins, Trevor W; Feng, Jianfeng; IMAGEN Consortium | Science advances | 2021 Feb | 33536210 | |
| Digital Medicine Community Perspectives and Challenges: Survey Study. | Bent, Brinnae; Sim, Ida; Dunn, Jessilyn P | JMIR mHealth and uHealth | 2021 Feb 03 | 33533721 | |
| Daily, weekly, seasonal and menstrual cycles in women's mood, behaviour and vital signs. | Pierson, Emma; Althoff, Tim; Thomas, Daniel; Hillard, Paula; Leskovec, Jure | Nature human behaviour | 2021 06 | 33526880 | |
| Evidence for similar structural brain anomalies in youth and adult attention-deficit/hyperactivity disorder: a machine learning analysis. | Zhang-James, Yanli; Helminen, Emily C; Liu, Jinru; ENIGMA-ADHD Working Group; Franke, Barbara; Hoogman, Martine; Faraone, Stephen V | Translational psychiatry | 2021 Feb 01 | 33526765 | |
| Ultradeep sequencing differentiates patterns of skin clonal mutations associated with sun-exposure status and skin cancer burden. | Wei, Lei; Christensen, Sean R; Fitzgerald, Megan E; Graham, James; Hutson, Nicholas D; Zhang, Chi; Huang, Ziyun; Hu, Qiang; Zhan, Fenglin; Xie, Jun; Zhang, Jianmin; Liu, Song; Remenyik, Eva; Gellen, Emese; Colegio, Oscar R; Bax, Michael; Xu, Jinhui; Lin, Haifan; Huss, Wendy J; Foster, Barbara A; Paragh, Gyorgy | Science advances | 2021 01 | 33523857 | |
| Morphological variables associated with ruptured basilar tip aneurysms. | Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose | Scientific reports | 2021 01 28 | 33510194 | |
| Mapping cortical and subcortical asymmetries in substance dependence: Findings from the ENIGMA Addiction Working Group. | Cao, Zhipeng; Ottino-Gonzalez, Jonatan; Cupertino, Renata B; Schwab, Nathan; Hoke, Colin; Catherine, Orr; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Momenan, Reza; Paulus, Martin P; Schmaal, Lianne; Sinha, Rajita; Sjoerds, Zsuzsika; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Uhlmann, Anne; van Holst, Ruth J; Veltman, Dick J; Wiers, Reinout W; Yücel, Murat; Zhang, Sheng; Jahanshad, Neda; Thompson, Paul M; Conrod, Patricia; Mackey, Scott; Garavan, Hugh | Addiction biology | 2021 09 | 33508888 | |
| Are psychotic-like experiences related to a discontinuation of cannabis consumption in young adults? | Daedelow, Laura S; Banaschewski, Tobias; Berning, Moritz; Bokde, Arun L W; Brühl, Rüdiger; Burke Quinlan, Erin; Curran, H Valerie; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Hardon, Anita; Kaminski, Jakob; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Murray, Hayley; Nees, Frauke; Oei, Nicole Y L; Papadopoulos Orfanos, Dimitri; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Rosenthal, Annika; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Wiers, Reinout W; Schumann, Gunter; Heinz, Andreas; ERANID Consortium; IMAGEN Consortium | Schizophrenia research | 2021 02 | 33493775 | |
| Meta-Analysis Reveals the Prognostic Relevance of Nuclear and Membrane-Associated Bile Acid Receptors in Gastric Cancer. | Rohr, Michael; Aljabban, Jihad; Rudeski-Rohr, Trina; Lessans, Spencer; Nakkina, Sai Preethi; Hadley, Dexter; Zhu, Xiang; Altomare, Deborah A | Clinical and translational gastroenterology | 2021 Jan 12 | 33492921 | |
| The Human Brain Is Best Described as Being on a Female/Male Continuum: Evidence from a Neuroimaging Connectivity Study. | Zhang, Yi; Luo, Qiang; Huang, Chu-Chung; Lo, Chun-Yi Zac; Langley, Christelle; Desrivières, Sylvane; Quinlan, Erin Burke; Banaschewski, Tobias; Millenet, Sabina; Bokde, Arun L W; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Paillère-Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Tsai, Shih-Jen; Lin, Ching-Po; Bullmore, Ed; Schumann, Gunter; Sahakian, Barbara J; Feng, Jianfeng; IMAGEN consortium | Cerebral cortex (New York, N.Y. : 1991) | 2021 05 10 | 33471126 | |
| Decentralized Multisite VBM Analysis During Adolescence Shows Structural Changes Linked to Age, Body Mass Index, and Smoking: a COINSTAC Analysis. | Gazula, Harshvardhan; Holla, Bharath; Zhang, Zuo; Xu, Jiayuan; Verner, Eric; Kelly, Ross; Jain, Sanjeev; Bharath, Rose Dawn; Barker, Gareth J; Basu, Debasish; Chakrabarti, Amit; Kalyanram, Kartik; Kumaran, Kalyanaraman; Singh, Lenin; Kuriyan, Rebecca; Murthy, Pratima; Benega, Vivek; Plis, Sergey M; Sarwate, Anand D; Turner, Jessica A; Schumann, Gunter; Calhoun, Vince D | Neuroinformatics | 2021 10 | 33462781 | |
| FairALM: Augmented Lagrangian Method for Training Fair Models with Little Regret. | Lokhande, Vishnu Suresh; Akash, Aditya Kumar; Ravi, Sathya N; Singh, Vikas | Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision | 2020 Aug | 33462570 | |
| Generating Accurate Pseudo-labels in Semi-Supervised Learning and Avoiding Overconfident Predictions via Hermite Polynomial Activations. | Lokhande, Vishnu Suresh; Tasneeyapant, Songwong; Venkatesh, Abhay; Ravi, Sathya N; Singh, Vikas | Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 2020 Jun | 33462534 | |
| Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions. | Duffy, Ben A; Zhao, Lu; Sepehrband, Farshid; Min, Joyce; Wang, Danny Jj; Shi, Yonggang; Toga, Arthur W; Kim, Hosung; Alzheimer's Disease Neuroimaging Initiative | NeuroImage | 2021 Jan 15 | 33460797 | |
| Structural brain imaging studies offer clues about the effects of the shared genetic etiology among neuropsychiatric disorders. | Radonjić, Nevena V; Hess, Jonathan L; Rovira, Paula; Andreassen, Ole; Buitelaar, Jan K; Ching, Christopher R K; Franke, Barbara; Hoogman, Martine; Jahanshad, Neda; McDonald, Carrie; Schmaal, Lianne; Sisodiya, Sanjay M; Stein, Dan J; van den Heuvel, Odile A; van Erp, Theo G M; van Rooij, Daan; Veltman, Dick J; Thompson, Paul; Faraone, Stephen V | Molecular psychiatry | 2021 06 | 33456050 | |
| Association of Immunosuppression and Viral Load With Subcortical Brain Volume in an International Sample of People Living With HIV. | Nir, Talia M; Fouche, Jean-Paul; Ananworanich, Jintanat; Ances, Beau M; Boban, Jasmina; Brew, Bruce J; Chaganti, Joga R; Chang, Linda; Ching, Christopher R K; Cysique, Lucette A; Ernst, Thomas; Faskowitz, Joshua; Gupta, Vikash; Harezlak, Jaroslaw; Heaps-Woodruff, Jodi M; Hinkin, Charles H; Hoare, Jacqueline; Joska, John A; Kallianpur, Kalpana J; Kuhn, Taylor; Lam, Hei Y; Law, Meng; Lebrun-Frénay, Christine; Levine, Andrew J; Mondot, Lydiane; Nakamoto, Beau K; Navia, Bradford A; Pennec, Xavier; Porges, Eric C; Salminen, Lauren E; Shikuma, Cecilia M; Surento, Wesley; Thames, April D; Valcour, Victor; Vassallo, Matteo; Woods, Adam J; Thompson, Paul M; Cohen, Ronald A; Paul, Robert; Stein, Dan J; Jahanshad, Neda | JAMA network open | 2021 01 04 | 33449093 | |
| A neural network to predict the knee adduction moment in patients with osteoarthritis using anatomical landmarks obtainable from 2D video analysis. | Boswell, M A; Uhlrich, S D; Kidziński, Ł; Thomas, K; Kolesar, J A; Gold, G E; Beaupre, G S; Delp, S L | Osteoarthritis and cartilage | 2021 Mar | 33422707 | |
| xGAP: A python based efficient, modular, extensible and fault tolerant genomic analysis pipeline for variant discovery. | Gorla, Aditya; Jew, Brandon; Zhang, Luke; Sul, Jae Hoon | Bioinformatics (Oxford, England) | 2021 Jan 08 | 33416856 | |
| An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes. | Ghaffari, Saba; Hanson, Casey; Schmidt, Remington E; Bouchonville, Kelly J; Offer, Steven M; Sinha, Saurabh | Genome biology | 2021 01 07 | 33413550 | |
| Coordinating Global Multi-Site Studies of Military-Relevant Traumatic Brain Injury: Opportunities, Challenges, and Harmonization Guidelines. | Tate, David F; Dennis, Emily L; Adams, John T; Adamson, Maheen M; Belanger, Heather G; Bigler, Erin D; Bouchard, Heather C; Clark, Alexandra L; Delano-Wood, Lisa M; Disner, Seth G; Eapen, Blessen C; Franz, Carol E; Geuze, Elbert; Goodrich-Hunsaker, Naomi J; Han, Kihwan; Hayes, Jasmeet P; Hinds 2nd, Sidney R; Hodges, Cooper B; Hovenden, Elizabeth S; Irimia, Andrei; Kenney, Kimbra; Koerte, Inga K; Kremen, William S; Levin, Harvey S; Lindsey, Hannah M; Morey, Rajendra A; Newsome, Mary R; Ollinger, John; Pugh, Mary Jo; Scheibel, Randall S; Shenton, Martha E; Sullivan, Danielle R; Taylor, Brian A; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin Sc; Wang, Xin; Ware, Ashley L; Zafonte, Ross; Thompson, Paul M; Wilde, Elisabeth A | Brain imaging and behavior | 2021 Apr | 33409819 | |
| Network Analysis Reveals a Distinct Axis of Macrophage Activation in Response to Conflicting Inflammatory Cues. | Liu, Xiaji; Zhang, Jingyuan; Zeigler, Angela C; Nelson, Anders R; Lindsey, Merry L; Saucerman, Jeffrey J | Journal of immunology (Baltimore, Md. : 1950) | 2021 Feb 15 | 33408259 | |
| Functional Connectivity Predicts Individual Development of Inhibitory Control during Adolescence. | Wang, Haiyan; Fan, Lingzhong; Song, Ming; Liu, Bing; Wu, Dongya; Jiang, Rongtao; Li, Jin; Li, Ang; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Jiang, Tianzi | Cerebral cortex (New York, N.Y. : 1991) | 2021 03 31 | 33386409 | |
| Exploring the value of MALDI-TOF MS for the detection of clonal outbreaks of Burkholderia contaminans. | Fiamanya, Selali; Cipolla, Lucía; Prieto, Mónica; Stelling, John | Journal of microbiological methods | 2021 Feb | 33383044 | |
| Using indication embeddings to represent patient health for drug safety studies. | Melamed, Rachel D | JAMIA open | 2020 Oct | 33376961 | |
| Unmixing for Causal Inference: Thoughts on McCaffrey and Danks. | Zhang, Kun; Glymour, Madelyn R K | The British journal for the philosophy of science | 2020 Dec | 33376450 | |
| OpenSim Moco: Musculoskeletal optimal control. | Dembia, Christopher L; Bianco, Nicholas A; Falisse, Antoine; Hicks, Jennifer L; Delp, Scott L | PLoS computational biology | 2020 12 | 33370252 | |
| Community Approaches for Integrating Environmental Exposures into Human Models of Disease. | Thessen, Anne E; Grondin, Cynthia J; Kulkarni, Resham D; Brander, Susanne; Truong, Lisa; Vasilevsky, Nicole A; Callahan, Tiffany J; Chan, Lauren E; Westra, Brian; Willis, Mary; Rothenberg, Sarah E; Jarabek, Annie M; Burgoon, Lyle; Korrick, Susan A; Haendel, Melissa A | Environmental health perspectives | 2020 12 | 33369481 | |
| FreeSurfer-based segmentation of hippocampal subfields: A review of methods and applications, with a novel quality control procedure for ENIGMA studies and other collaborative efforts. | Sämann, Philipp G; Iglesias, Juan Eugenio; Gutman, Boris; Grotegerd, Dominik; Leenings, Ramona; Flint, Claas; Dannlowski, Udo; Clarke-Rubright, Emily K; Morey, Rajendra A; van Erp, Theo G M; Whelan, Christopher D; Han, Laura K M; van Velzen, Laura S; Cao, Bo; Augustinack, Jean C; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne | Human brain mapping | 2020 Dec 27 | 33368865 | |
| OCTAD: an open workspace for virtually screening therapeutics targeting precise cancer patient groups using gene expression features. | Zeng, Billy; Glicksberg, Benjamin S; Newbury, Patrick; Chekalin, Evgeny; Xing, Jing; Liu, Ke; Wen, Anita; Chow, Caven; Chen, Bin | Nature protocols | 2021 02 | 33361798 | |
| Obstacles to the reuse of study metadata in ClinicalTrials.gov. | Miron, Laura; Gonçalves, Rafael S; Musen, Mark A | Scientific data | 2020 12 18 | 33339830 | |
| Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. | Warren, Wesley C; Harris, R Alan; Haukness, Marina; Fiddes, Ian T; Murali, Shwetha C; Fernandes, Jason; Dishuck, Philip C; Storer, Jessica M; Raveendran, Muthuswamy; Hillier, LaDeana W; Porubsky, David; Mao, Yafei; Gordon, David; Vollger, Mitchell R; Lewis, Alexandra P; Munson, Katherine M; DeVogelaere, Elizabeth; Armstrong, Joel; Diekhans, Mark; Walker, Jerilyn A; Tomlinson, Chad; Graves-Lindsay, Tina A; Kremitzki, Milinn; Salama, Sofie R; Audano, Peter A; Escalona, Merly; Maurer, Nicholas W; Antonacci, Francesca; Mercuri, Ludovica; Maggiolini, Flavia A M; Catacchio, Claudia Rita; Underwood, Jason G; O'Connor, David H; Sanders, Ashley D; Korbel, Jan O; Ferguson, Betsy; Kubisch, H Michael; Picker, Louis; Kalin, Ned H; Rosene, Douglas; Levine, Jon; Abbott, David H; Gray, Stanton B; Sanchez, Mar M; Kovacs-Balint, Zsofia A; Kemnitz, Joseph W; Thomasy, Sara M; Roberts, Jeffrey A; Kinnally, Erin L; Capitanio, John P; Skene, J H Pate; Platt, Michael; Cole, Shelley A; Green, Richard E; Ventura, Mario; Wiseman, Roger W; Paten, Benedict; Batzer, Mark A; Rogers, Jeffrey; Eichler, Evan E | Science (New York, N.Y.) | 2020 12 18 | 33335035 | |
| Synergistic and Antagonistic Drug Combinations against SARS-CoV-2. | Bobrowski, Tesia; Chen, Lu; Eastman, Richard T; Itkin, Zina; Shinn, Paul; Chen, Catherine Z; Guo, Hui; Zheng, Wei; Michael, Sam; Simeonov, Anton; Hall, Matthew D; Zakharov, Alexey V; Muratov, Eugene N | Molecular therapy : the journal of the American Society of Gene Therapy | 2021 02 03 | 33333292 | |
| High-fidelity musculoskeletal modeling reveals a motor planning contribution to the speed-accuracy tradeoff. | Al Borno, Mazen; Vyas, Saurabh; Shenoy, Krishna V; Delp, Scott L | eLife. | 2020 Dec 16; | 33325369 | |
| Comparison of segmentation-free and segmentation-dependent computer-aided diagnosis of breast masses on a public mammography dataset. | Sawyer Lee, Rebecca; Dunnmon, Jared A; He, Ann; Tang, Siyi; Ré, Christopher; Rubin, Daniel L | Journal of biomedical informatics | 2021 01 | 33309994 | |
| Vascular Geometry Associated with Anterior Communicating Artery Aneurysm Formation. | Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose | World neurosurgery | 2021 Feb | 33307259 | |
| Engagement With a Behavior Change App for Alcohol Reduction: Data Visualization for Longitudinal Observational Study. | Bell, Lauren; Garnett, Claire; Qian, Tianchen; Perski, Olga; Williamson, Elizabeth; Potts, Henry Ww | Journal of medical Internet research | 2020 12 11 | 33306026 | |
| HMPDACC: a Human Microbiome Project Multi-omic data resource. | Creasy, Heather Huot; Felix, Victor; Aluvathingal, Jain; Crabtree, Jonathan; Ifeonu, Olukemi; Matsumura, James; McCracken, Carrie; Nickel, Lance; Orvis, Joshua; Schor, Mike; Giglio, Michelle; Mahurkar, Anup; White, Owen | Nucleic acids research | 2021 01 08 | 33305317 | |
| Ten years of enhancing neuro-imaging genetics through meta-analysis: An overview from the ENIGMA Genetics Working Group. | Medland, Sarah E; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie N; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Pizzagalli, Fabrizio; Thomopoulos, Sophia I; Stein, Jason L; Franke, Barbara; Martin, Nicholas G; Thompson, Paul M; ENIGMA Genetics Working Group | Human brain mapping | 2022 Jan | 33300665 | |
| The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area. | Tilot, Amanda K; Khramtsova, Ekaterina A; Liang, Dan; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Liu, Siyao; Brotman, Sarah M; Thompson, Paul M; Medland, Sarah E; Macciardi, Fabio; Stranger, Barbara E; Davis, Lea K; Fisher, Simon E; Stein, Jason L | Cerebral cortex (New York, N.Y. : 1991) | 2021 03 05 | 33290510 | |
| MicroRNA miR-24-3p reduces DNA damage responses, apoptosis, and susceptibility to chronic obstructive pulmonary disease. | Nouws, Jessica; Wan, Feng; Finnemore, Eric; Roque, Willy; Kim, So-Jin; Bazan, Isabel; Li, Chuan-Xing; Skold, C Magnus; Dai, Qile; Yan, Xiting; Chioccioli, Maurizio; Neumeister, Veronique; Britto, Clemente J; Sweasy, Joann; Bindra, Ranjit; Wheelock, Åsa M; Gomez, Jose L; Kaminski, Naftali; Lee, Patty J; Sauler, Maor | JCI insight | 2021 Jan 25 | 33290275 | |
| Cortical volume abnormalities in posttraumatic stress disorder: an ENIGMA-psychiatric genomics consortium PTSD workgroup mega-analysis. | Wang, Xin; Xie, Hong; Chen, Tian; Cotton, Andrew S; Salminen, Lauren E; Logue, Mark W; Clarke-Rubright, Emily K; Wall, John; Dennis, Emily L; O'Leary, Brian M; Abdallah, Chadi G; Andrew, Elpiniki; Baugh, Lee A; Bomyea, Jessica; Bruce, Steven E; Bryant, Richard; Choi, Kyle; Daniels, Judith K; Davenport, Nicholas D; Davidson, Richard J; DeBellis, Michael; deRoon-Cassini, Terri; Disner, Seth G; Fani, Negar; Fercho, Kelene A; Fitzgerald, Jacklynn; Forster, Gina L; Frijling, Jessie L; Geuze, Elbert; Gomaa, Hassaan; Gordon, Evan M; Grupe, Dan; Harpaz-Rotem, Ilan; Haswell, Courtney C; Herzog, Julia I; Hofmann, David; Hollifield, Michael; Hosseini, Bobak; Hudson, Anna R; Ipser, Jonathan; Jahanshad, Neda; Jovanovic, Tanja; Kaufman, Milissa L; King, Anthony P; Koch, Saskia B J; Koerte, Inga K; Korgaonkar, Mayuresh S; Krystal, John H; Larson, Christine; Lebois, Lauren A M; Levy, Ifat; Li, Gen; Magnotta, Vincent A; Manthey, Antje; May, Geoffrey; McLaughlin, Katie A; Mueller, Sven C; Nawijn, Laura; Nelson, Steven M; Neria, Yuval; Nitschke, Jack B; Olff, Miranda; Olson, Elizabeth A; Peverill, Matthew; Luan Phan, K; Rashid, Faisal M; Ressler, Kerry; Rosso, Isabelle M; Sambrook, Kelly; Schmahl, Christian; Shenton, Martha E; Sierk, Anika; Simons, Jeffrey S; Simons, Raluca M; Sponheim, Scott R; Stein, Murray B; Stein, Dan J; Stevens, Jennifer S; Straube, Thomas; Suarez-Jimenez, Benjamin; Tamburrino, Marijo; Thomopoulos, Sophia I; van der Wee, Nic J A; van der Werff, Steven J A; van Erp, Theo G M; van Rooij, Sanne J H; van Zuiden, Mirjam; Varkevisser, Tim; Veltman, Dick J; Vermeiren, Robert R J M; Walter, Henrik; Wang, Li; Zhu, Ye; Zhu, Xi; Thompson, Paul M; Morey, Rajendra A; Liberzon, Israel | Molecular psychiatry. | 2020 Dec 07; | 33288872 | |
| Identification of Dysregulated Genes for Late-Onset Alzheimer's Disease Using Gene Expression Data in Brain. | Arzouni, Nibal; Matloff, Will; Zhao, Lu; Ning, Kaida; Toga, Arthur W | Journal of Alzheimer's disease & Parkinsonism | 2020 | 33282526 | |
| COVID-19 Knowledge Extractor (COKE): A Tool and a Web Portal to Extract Drug - Target Protein Associations from the CORD-19 Corpus of Scientific Publications on COVID-19. | Korn, Daniel; Pervitsky, Vera; Bobrowski, Tesia; Alves, Vinicius; Schmitt, Charles; Bizon, Cristopher; Baker, Nancy; Chirkova, Rada; Cherkasov, Artem; Muratov, Eugene; Tropsha, Alexander | ChemRxiv : the preprint server for chemistry | 2020 Nov 26 | 33269341 | |
| The Impact of COVID-19 on African American Communities in the United States. | Cyrus, Elena; Clarke, Rachel; Hadley, Dexter; Bursac, Zoran; Trepka, Mary Jo; Dévieux, Jessy G; Bagci, Ulas; Furr-Holden, Debra; Coudray, Makella; Mariano, Yandra; Kiplagat, Sandra; Noel, Ines; Ravelo, Gira; Paley, Michelle; Wagner, Eric F | Health equity | 2020 | 33269331 | |
| The Human Phenotype Ontology in 2021. | Köhler, Sebastian; Gargano, Michael; Matentzoglu, Nicolas; Carmody, Leigh C; Lewis-Smith, David; Vasilevsky, Nicole A; Danis, Daniel; Balagura, Ganna; Baynam, Gareth; Brower, Amy M; Callahan, Tiffany J; Chute, Christopher G; Est, Johanna L; Galer, Peter D; Ganesan, Shiva; Griese, Matthias; Haimel, Matthias; Pazmandi, Julia; Hanauer, Marc; Harris, Nomi L; Hartnett, Michael J; Hastreiter, Maximilian; Hauck, Fabian; He, Yongqun; Jeske, Tim; Kearney, Hugh; Kindle, Gerhard; Klein, Christoph; Knoflach, Katrin; Krause, Roland; Lagorce, David; McMurry, Julie A; Miller, Jillian A; Munoz-Torres, Monica C; Peters, Rebecca L; Rapp, Christina K; Rath, Ana M; Rind, Shahmir A; Rosenberg, Avi Z; Segal, Michael M; Seidel, Markus G; Smedley, Damian; Talmy, Tomer; Thomas, Yarlalu; Wiafe, Samuel A; Xian, Julie; Yüksel, Zafer; Helbig, Ingo; Mungall, Christopher J; Haendel, Melissa A; Robinson, Peter N | Nucleic acids research | 2021 01 08 | 33264411 | |
| Association of Genetic and Phenotypic Assessments With Onset of Disordered Eating Behaviors and Comorbid Mental Health Problems Among Adolescents. | Robinson, Lauren; Zhang, Zuo; Jia, Tianye; Bobou, Marina; Roach, Anna; Campbell, Iain; Irish, Madeleine; Quinlan, Erin Burke; Tay, Nicole; Barker, Edward D; Banaschewski, Tobias; Bokde, Arun L W; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Stringaris, Argyris; Penttilä, Jani; van Noort, Betteke; Grimmer, Yvonne; Martinot, Marie-Laure Paillère; Insensee, Corinna; Becker, Andreas; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike; Desrivières, Sylvane; IMAGEN Consortium | JAMA network open | 2020 12 01 | 33263759 | |
| Metaanalysis Reveals Genetic Correlates of Osteoporosis Pathogenesis. | Hasan, Laith K; Aljabban, Jihad; Rohr, Michael; Mukhtar, Mohamed; Adapa, Nikhil; Salim, Rahaf; Aljabban, Nabeal; Syed, Saad; Syed, Sharjeel; Panahiazar, Maryam; Hadley, Dexter; Jarjour, Wael | The Journal of rheumatology | 2020 Dec 01 | 33262303 | |
| Patch-Based Surface Morphometry Feature Selection with Federated Group Lasso Regression. | Wu, Jianfeng; Zhang, Jie; Li, Qingyang; Su, Yi; Chen, Kewei; Reiman, Eric M; Wang, Jie; Lepore, Natasha; Ye, Jieping; Thompson, Paul M; Wang, Yalin | Proceedings of SPIE--the International Society for Optical Engineering. | 2020 Oct; | 33250550 | |
| Transforming the study of organisms: Phenomic data models and knowledge bases. | Thessen, Anne E; Walls, Ramona L; Vogt, Lars; Singer, Jessica; Warren, Robert; Buttigieg, Pier Luigi; Balhoff, James P; Mungall, Christopher J; McGuinness, Deborah L; Stucky, Brian J; Yoder, Matthew J; Haendel, Melissa A | PLoS computational biology | 2020 11 | 33232313 | |
| Bridging the Brain and Data Sciences. | Van Horn, John Darrell | Big data | 2021 06 | 33211552 | |
| Network-based atrophy modeling in the common epilepsies: A worldwide ENIGMA study. | Larivière, Sara; Rodríguez-Cruces, Raúl; Royer, Jessica; Caligiuri, Maria Eugenia; Gambardella, Antonio; Concha, Luis; Keller, Simon S; Cendes, Fernando; Yasuda, Clarissa; Bonilha, Leonardo; Gleichgerrcht, Ezequiel; Focke, Niels K; Domin, Martin; von Podewills, Felix; Langner, Soenke; Rummel, Christian; Wiest, Roland; Martin, Pascal; Kotikalapudi, Raviteja; O'Brien, Terence J; Sinclair, Benjamin; Vivash, Lucy; Desmond, Patricia M; Alhusaini, Saud; Doherty, Colin P; Cavalleri, Gianpiero L; Delanty, Norman; Kälviäinen, Reetta; Jackson, Graeme D; Kowalczyk, Magdalena; Mascalchi, Mario; Semmelroch, Mira; Thomas, Rhys H; Soltanian-Zadeh, Hamid; Davoodi-Bojd, Esmaeil; Zhang, Junsong; Lenge, Matteo; Guerrini, Renzo; Bartolini, Emanuele; Hamandi, Khalid; Foley, Sonya; Weber, Bernd; Depondt, Chantal; Absil, Julie; Carr, Sarah J A; Abela, Eugenio; Richardson, Mark P; Devinsky, Orrin; Severino, Mariasavina; Striano, Pasquale; Tortora, Domenico; Hatton, Sean N; Vos, Sjoerd B; Duncan, John S; Whelan, Christopher D; Thompson, Paul M; Sisodiya, Sanjay M; Bernasconi, Andrea; Labate, Angelo; McDonald, Carrie R; Bernasconi, Neda; Bernhardt, Boris C | Science advances. | 2020 Nov; | 33208365 | |
| Uncovering Effective Explanations for Interactive Genomic Data Analysis. | Huang, Silu; Blatti, Charles; Sinha, Saurabh; Parameswaran, Aditya | Patterns (New York, N.Y.). | 2020 Sep 11; | 33205133 | |
| The Clinical Kinase Index: A Method to Prioritize Understudied Kinases as Drug Targets for the Treatment of Cancer. | Essegian, Derek; Khurana, Rimpi; Stathias, Vasileios; Schürer, Stephan C | Cell reports. Medicine. | 2020 Oct 20; | 33205077 | |
| Association Between the Economic Environment and the Living Organ Donation Rate: Evidence and Implications. | Lee, Sean S; Sielski, Michael W; Charpentier, Kevin P | Journal of the American College of Surgeons | 2021 02 | 33197569 | |
| Hidden Stratification Causes Clinically Meaningful Failures in Machine Learning for Medical Imaging. | Oakden-Rayner, Luke; Dunnmon, Jared; Carneiro, Gustavo; Ré, Christopher | Proceedings of the ACM Conference on Health, Inference, and Learning. | 2020 Apr; | 33196064 | |
| Using novel mobile sensors to assess stress and smoking lapse. | Nakajima, Motohiro; Lemieux, Andrine M; Fiecas, Mark; Chatterjee, Soujanya; Sarker, Hillol; Saleheen, Nazir; Ertin, Emre; Kumar, Santosh; al'Absi, Mustafa | International journal of psychophysiology : official journal of the International Organization of Psychophysiology | 2020 12 | 33189770 | |
| Atlas55+: Brain Functional Atlas of Resting-State Networks for Late Adulthood. | Doucet, Gaelle E; Labache, Loic; Thompson, Paul M; Joliot, Marc; Frangou, Sophia; Alzheimer’s Disease Neuroimaging Initiative | Cerebral cortex (New York, N.Y. : 1991) | 2021 02 05 | 33188411 | |
| Dense sampling of bird diversity increases power of comparative genomics. | Feng, Shaohong; Stiller, Josefin; Deng, Yuan; Armstrong, Joel; Fang, Qi; Reeve, Andrew Hart; Xie, Duo; Chen, Guangji; Guo, Chunxue; Faircloth, Brant C; Petersen, Bent; Wang, Zongji; Zhou, Qi; Diekhans, Mark; Chen, Wanjun; Andreu-Sánchez, Sergio; Margaryan, Ashot; Howard, Jason Travis; Parent, Carole; Pacheco, George; Sinding, Mikkel-Holger S; Puetz, Lara; Cavill, Emily; Ribeiro, Ângela M; Eckhart, Leopold; Fjeldså, Jon; Hosner, Peter A; Brumfield, Robb T; Christidis, Les; Bertelsen, Mads F; Sicheritz-Ponten, Thomas; Tietze, Dieter Thomas; Robertson, Bruce C; Song, Gang; Borgia, Gerald; Claramunt, Santiago; Lovette, Irby J; Cowen, Saul J; Njoroge, Peter; Dumbacher, John Philip; Ryder, Oliver A; Fuchs, Jérôme; Bunce, Michael; Burt, David W; Cracraft, Joel; Meng, Guanliang; Hackett, Shannon J; Ryan, Peter G; Jønsson, Knud Andreas; Jamieson, Ian G; da Fonseca, Rute R; Braun, Edward L; Houde, Peter; Mirarab, Siavash; Suh, Alexander; Hansson, Bengt; Ponnikas, Suvi; Sigeman, Hanna; Stervander, Martin; Frandsen, Paul B; van der Zwan, Henriette; van der Sluis, Rencia; Visser, Carina; Balakrishnan, Christopher N; Clark, Andrew G; Fitzpatrick, John W; Bowman, Reed; Chen, Nancy; Cloutier, Alison; Sackton, Timothy B; Edwards, Scott V; Foote, Dustin J; Shakya, Subir B; Sheldon, Frederick H; Vignal, Alain; Soares, André E R; Shapiro, Beth; González-Solís, Jacob; Ferrer-Obiol, Joan; Rozas, Julio; Riutort, Marta; Tigano, Anna; Friesen, Vicki; Dalén, Love; Urrutia, Araxi O; Székely, Tamás; Liu, Yang; Campana, Michael G; Corvelo, André; Fleischer, Robert C; Rutherford, Kim M; Gemmell, Neil J; Dussex, Nicolas; Mouritsen, Henrik; Thiele, Nadine; Delmore, Kira; Liedvogel, Miriam; Franke, Andre; Hoeppner, Marc P; Krone, Oliver; Fudickar, Adam M; Milá, Borja; Ketterson, Ellen D; Fidler, Andrew Eric; Friis, Guillermo; Parody-Merino, Ángela M; Battley, Phil F; Cox, Murray P; Lima, Nicholas Costa Barroso; Prosdocimi, Francisco; Parchman, Thomas Lee; Schlinger, Barney A; Loiselle, Bette A; Blake, John G; Lim, Haw Chuan; Day, Lainy B; Fuxjager, Matthew J; Baldwin, Maude W; Braun, Michael J; Wirthlin, Morgan; Dikow, Rebecca B; Ryder, T Brandt; Camenisch, Glauco; Keller, Lukas F; DaCosta, Jeffrey M; Hauber, Mark E; Louder, Matthew I M; Witt, Christopher C; McGuire, Jimmy A; Mudge, Joann; Megna, Libby C; Carling, Matthew D; Wang, Biao; Taylor, Scott A; Del-Rio, Glaucia; Aleixo, Alexandre; Vasconcelos, Ana Tereza Ribeiro; Mello, Claudio V; Weir, Jason T; Haussler, David; Li, Qiye; Yang, Huanming; Wang, Jian; Lei, Fumin; Rahbek, Carsten; Gilbert, M Thomas P; Graves, Gary R; Jarvis, Erich D; Paten, Benedict; Zhang, Guojie | Nature | 2020 11 | 33177665 | |
| Progressive Cactus is a multiple-genome aligner for the thousand-genome era. | Armstrong, Joel; Hickey, Glenn; Diekhans, Mark; Fiddes, Ian T; Novak, Adam M; Deran, Alden; Fang, Qi; Xie, Duo; Feng, Shaohong; Stiller, Josefin; Genereux, Diane; Johnson, Jeremy; Marinescu, Voichita Dana; Alföldi, Jessica; Harris, Robert S; Lindblad-Toh, Kerstin; Haussler, David; Karlsson, Elinor; Jarvis, Erich D; Zhang, Guojie; Paten, Benedict | Nature. | 2020 11; | 33177663 | |
| COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database. | Korn, Daniel; Bobrowski, Tesia; Li, Michael; Kebede, Yaphet; Wang, Patrick; Owen, Phillips; Vaidya, Gaurav; Muratov, Eugene; Chirkova, Rada; Bizon, Chris; Tropsha, Alexander | Bioinformatics (Oxford, England) | 2021 05 01 | 33175089 | |
| The effect of body mass index on hippocampal morphology and memory performance in late childhood and adolescence. | Lynch, Kirsten M; Page, Kathleen A; Shi, Yonggang; Xiang, Anny H; Toga, Arthur W; Clark, Kristi A | Hippocampus. | 2020 Nov 11; | 33174346 | |
| Sex differences in viral entry protein expression, host responses to SARS-CoV-2, and in vitro responses to sex steroid hormone treatment in COVID-19. | Sun, Mengying; Shankar, Rama; Ko, Meehyun; Chang, Christopher Daniel; Yeh, Shan-Ju; Li, Shilong; Liu, Ke; Zhou, Guoli; Xing, Jing; VanVelsen, Austin; VanVelsen, Tyler; Paithankar, Shreya; Feng, Benjamin Y; Young, Krista; Strug, Michael; Turco, Lauren; Wang, Zichen; Schadt, Eric; Chen, Rong; Li, Xiaohong; Oskotsky, Tomiko; Sirota, Marina; Glicksberg, Benjamin S; Nadkarni, Girish N; Moeser, Adam J; Li, Li; Kim, Seungtaek; Zhou, Jiayu; Chen, Bin | Research square. | 2020 Nov 04; | 33173861 | |
| Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project. | Hoopmann, Michael R; Kusebauch, Ulrike; Palmblad, Magnus; Bandeira, Nuno; Shteynberg, David D; He, Lingjie; Xia, Bin; Stoychev, Stoyan H; Omenn, Gilbert S; Weintraub, Susan T; Moritz, Robert L | Journal of proteome research | 2020 12 04 | 33166149 | |
| ppmHR: A Privacy-protecting Tool to Fit Inverse Probability Weighted Cox Models in Multisite Studies. | Shu, Di; Toh, Sengwee | Epidemiology (Cambridge, Mass.) | 2021 03 01 | 33165009 | |
| Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data. | Zong, Nansu; Stone, Daniel J; Sharma, Deepak K; Wen, Andrew; Wang, Chen; Yu, Yue; Huang, Ming; Liu, Sijia; Liu, Hongfang; Shi, Qian; Jiang, Guoqian | International journal of medical informatics. | 2021 Jan; | 33160272 | |
| Learning to encode cellular responses to systematic perturbations with deep generative models. | Xue, Yifan; Ding, Michael Q; Lu, Xinghua | NPJ systems biology and applications. | 2020 11 06; | 33159077 | |
| Balancing Accuracy and Privacy in Federated Queries of Clinical Data Repositories: Algorithm Development and Validation. | Yu, Yun William; Weber, Griffin M | Journal of medical Internet research. | 2020 Nov 03; | 33141090 | |
| Linear mixed models with endogenous covariates: modeling sequential treatment effects with application to a mobile health study. | Qian, Tianchen; Klasnja, Predrag; Murphy, Susan A | Statistical science : a review journal of the Institute of Mathematical Statistics. | 2020; | 33132496 | |
| Staphylococcus aureus antimicrobial susceptibility trends and cluster detection in Vermont: 2012-2018. | Stelling, John; Read, Jennifer S; Peters, Rob; Clark, Adam; Bokhari, Marissa; O'Brien, Thomas F | Expert review of anti-infective therapy | 2021 06 | 33131354 | |
| Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors. | Manjunath, Mohith; Yan, Jialu; Youn, Yeoan; Drucker, Kristen L; Kollmeyer, Thomas M; McKinney, Andrew M; Zazubovich, Valter; Zhang, Yi; Costello, Joseph F; Eckel-Passow, Jeanette; Selvin, Paul R; Jenkins, Robert B; Song, Jun S | Neuro-oncology | 2021 04 12 | 33130899 | |
| Reconstruction of respiratory variation signals from fMRI data. | Salas, Jorge A; Bayrak, Roza G; Huo, Yuankai; Chang, Catie | NeuroImage | 2021 01 15 | 33129927 | |
| Cardiac Imaging of Aortic Valve Area From 34 287 UK Biobank Participants Reveals Novel Genetic Associations and Shared Genetic Comorbidity With Multiple Disease Phenotypes. | Córdova-Palomera, Aldo; Tcheandjieu, Catherine; Fries, Jason A; Varma, Paroma; Chen, Vincent S; Fiterau, Madalina; Xiao, Ke; Tejeda, Heliodoro; Keavney, Bernard D; Cordell, Heather J; Tanigawa, Yosuke; Venkataraman, Guhan; Rivas, Manuel A; Ré, Christopher; Ashley, Euan; Priest, James R | Circulation. Genomic and precision medicine | 2020 12 | 33125279 | |
| A large-scale genome-wide association study meta-analysis of cannabis use disorder. | Johnson, Emma C; Demontis, Ditte; Thorgeirsson, Thorgeir E; Walters, Raymond K; Polimanti, Renato; Hatoum, Alexander S; Sanchez-Roige, Sandra; Paul, Sarah E; Wendt, Frank R; Clarke, Toni-Kim; Lai, Dongbing; Reginsson, Gunnar W; Zhou, Hang; He, June; Baranger, David A A; Gudbjartsson, Daniel F; Wedow, Robbee; Adkins, Daniel E; Adkins, Amy E; Alexander, Jeffry; Bacanu, Silviu-Alin; Bigdeli, Tim B; Boden, Joseph; Brown, Sandra A; Bucholz, Kathleen K; Bybjerg-Grauholm, Jonas; Corley, Robin P; Degenhardt, Louisa; Dick, Danielle M; Domingue, Benjamin W; Fox, Louis; Goate, Alison M; Gordon, Scott D; Hack, Laura M; Hancock, Dana B; Hartz, Sarah M; Hickie, Ian B; Hougaard, David M; Krauter, Kenneth; Lind, Penelope A; McClintick, Jeanette N; McQueen, Matthew B; Meyers, Jacquelyn L; Montgomery, Grant W; Mors, Ole; Mortensen, Preben B; Nordentoft, Merete; Pearson, John F; Peterson, Roseann E; Reynolds, Maureen D; Rice, John P; Runarsdottir, Valgerdur; Saccone, Nancy L; Sherva, Richard; Silberg, Judy L; Tarter, Ralph E; Tyrfingsson, Thorarinn; Wall, Tamara L; Webb, Bradley T; Werge, Thomas; Wetherill, Leah; Wright, Margaret J; Zellers, Stephanie; Adams, Mark J; Bierut, Laura J; Boardman, Jason D; Copeland, William E; Farrer, Lindsay A; Foroud, Tatiana M; Gillespie, Nathan A; Grucza, Richard A; Harris, Kathleen Mullan; Heath, Andrew C; Hesselbrock, Victor; Hewitt, John K; Hopfer, Christian J; Horwood, John; Iacono, William G; Johnson, Eric O; Kendler, Kenneth S; Kennedy, Martin A; Kranzler, Henry R; Madden, Pamela A F; Maes, Hermine H; Maher, Brion S; Martin, Nicholas G; McGue, Matthew; McIntosh, Andrew M; Medland, Sarah E; Nelson, Elliot C; Porjesz, Bernice; Riley, Brien P; Stallings, Michael C; Vanyukov, Michael M; Vrieze, Scott; Psychiatric Genomics Consortium Substance Use Disorders Workgroup; Davis, Lea K; Bogdan, Ryan; Gelernter, Joel; Edenberg, Howard J; Stefansson, Kari; Børglum, Anders D; Agrawal, Arpana | The lancet. Psychiatry. | 2020 Dec; | 33096046 | |
| Surrounding vascular geometry associated with basilar tip aneurysm formation. | Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose | Scientific reports | 2020 10 21 | 33087795 | |
| Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia. | Moreau, Clara A; Urchs, Sebastian G W; Kuldeep, Kumar; Orban, Pierre; Schramm, Catherine; Dumas, Guillaume; Labbe, Aurélie; Huguet, Guillaume; Douard, Elise; Quirion, Pierre-Olivier; Lin, Amy; Kushan, Leila; Grot, Stephanie; Luck, David; Mendrek, Adrianna; Potvin, Stephane; Stip, Emmanuel; Bourgeron, Thomas; Evans, Alan C; Bearden, Carrie E; Bellec, Pierre; Jacquemont, Sebastien | Nature communications. | 2020 10 19; | 33077750 | |
| In vivo hippocampal subfield volumes in bipolar disorder-A mega-analysis from The Enhancing Neuro Imaging Genetics through Meta-Analysis Bipolar Disorder Working Group. | Haukvik, Unn K; Gurholt, Tiril P; Nerland, Stener; Elvsåshagen, Torbjørn; Akudjedu, Theophilus N; Alda, Martin; Alnaes, Dag; Alonso-Lana, Silvia; Bauer, Jochen; Baune, Bernhard T; Benedetti, Francesco; Berk, Michael; Bettella, Francesco; Bøen, Erlend; Bonnín, Caterina M; Brambilla, Paolo; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Dandash, Orwa; Dannlowski, Udo; Delvecchio, Giuseppe; Díaz-Zuluaga, Ana M; van Erp, Theo G M; Fatjó-Vilas, Mar; Foley, Sonya F; Förster, Katharina; Fullerton, Janice M; Goikolea, José M; Grotegerd, Dominik; Gruber, Oliver; Haarman, Bartholomeus C M; Haatveit, Beathe; Hajek, Tomas; Hallahan, Brian; Harris, Mathew; Hawkins, Emma L; Howells, Fleur M; Hülsmann, Carina; Jahanshad, Neda; Jørgensen, Kjetil N; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Kuplicki, Rayus; Lagerberg, Trine V; Lancaster, Thomas M; Lenroot, Rhoshel K; Lonning, Vera; López-Jaramillo, Carlos; Malt, Ulrik F; McDonald, Colm; McIntosh, Andrew M; McPhilemy, Genevieve; van der Meer, Dennis; Melle, Ingrid; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadi?, Igor; Oertel, Viola; Oldani, Lucio; Opel, Nils; Otaduy, Maria C G; Overs, Bronwyn J; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Radua, Joaquim; Rauer, Lisa; Redlich, Ronny; Repple, Jonathan; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salminen, Lauren E; Salvador, Raymond; Sarró, Salvador; Savitz, Jonathan; Schene, Aart H; Sim, Kang; Soeiro-de-Souza, Marcio G; Stäblein, Michael; Stein, Dan J; Stein, Frederike; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Veltman, Dick J; Vieta, Eduard; Waltemate, Lena; Westlye, Lars T; Whalley, Heather C; Sämann, Philipp G; Thompson, Paul M; Ching, Christopher R K; Andreassen, Ole A; Agartz, Ingrid; ENIGMA Bipolar Disorder Working Group | Human brain mapping. | 2020 Oct 19; | 33073925 | |
| Regularization of Deep Neural Networks for EEG Seizure Detection to Mitigate Overfitting. | Saqib, Mohammed; Zhu, Yuanda; Wang, May Dongmei; Beaulieu-Jones, Brett | Proceedings : Annual International Computer Software and Applications Conference. COMPSAC. | 2020 Jul; | 33073266 | |
| Testing a convolutional neural network-based hippocampal segmentation method in a stroke population. | Zavaliangos-Petropulu, Artemis; Tubi, Meral A; Haddad, Elizabeth; Zhu, Alyssa; Braskie, Meredith N; Jahanshad, Neda; Thompson, Paul M; Liew, Sook-Lei | Human brain mapping | 2022 Jan | 33067842 | |
| A high-stringency blueprint of the human proteome. | Adhikari, Subash; Nice, Edouard C; Deutsch, Eric W; Lane, Lydie; Omenn, Gilbert S; Pennington, Stephen R; Paik, Young-Ki; Overall, Christopher M; Corrales, Fernando J; Cristea, Ileana M; Van Eyk, Jennifer E; Uhlén, Mathias; Lindskog, Cecilia; Chan, Daniel W; Bairoch, Amos; Waddington, James C; Justice, Joshua L; LaBaer, Joshua; Rodriguez, Henry; He, Fuchu; Kostrzewa, Markus; Ping, Peipei; Gundry, Rebekah L; Stewart, Peter; Srivastava, Sanjeeva; Srivastava, Sudhir; Nogueira, Fabio C S; Domont, Gilberto B; Vandenbrouck, Yves; Lam, Maggie P Y; Wennersten, Sara; Vizcaino, Juan Antonio; Wilkins, Marc; Schwenk, Jochen M; Lundberg, Emma; Bandeira, Nuno; Marko-Varga, Gyorgy; Weintraub, Susan T; Pineau, Charles; Kusebauch, Ulrike; Moritz, Robert L; Ahn, Seong Beom; Palmblad, Magnus; Snyder, Michael P; Aebersold, Ruedi; Baker, Mark S | Nature communications. | 2020 10 16; | 33067450 | |
| Predicting alcohol dependence from multi-site brain structural measures. | Hahn, Sage; Mackey, Scott; Cousijn, Janna; Foxe, John J; Heinz, Andreas; Hester, Robert; Hutchinson, Kent; Kiefer, Falk; Korucuoglu, Ozlem; Lett, Tristram; Li, Chiang-Shan R; London, Edythe; Lorenzetti, Valentina; Maartje, Luijten; Momenan, Reza; Orr, Catherine; Paulus, Martin; Schmaal, Lianne; Sinha, Rajita; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot; van Holst, Ruth J; Veltman, Dick; Walter, Henrik; Wiers, Reinout W; Yucel, Murat; Thompson, Paul M; Conrod, Patricia; Allgaier, Nicholas; Garavan, Hugh | Human brain mapping | 2022 Jan | 33064342 | |
| Association between childhood trauma and risk for obesity: a putative neurocognitive developmental pathway. | Luo, Qiang; Zhang, Lingli; Huang, Chu-Chung; Zheng, Yan; Kanen, Jonathan W; Zhao, Qi; Yao, Ye; Quinlan, Erin B; Jia, Tianye; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Sahakian, Barbara J; Schumann, Gunter; Li, Fei; Feng, Jianfeng; Desrivières, Sylvane; Robbins, Trevor W; IMAGEN consortium | BMC medicine. | 2020 Oct 15; | 33054810 | |
| Greater male than female variability in regional brain structure across the lifespan. | Wierenga, Lara M; Doucet, Gaelle E; Dima, Danai; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andreassen, Ole A; Anticevic, Alan; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; den Braber, Anouk; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Calhoun, Vince D; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Chaim-Avancini, Tiffany M; Ching, Christopher Rk; Clark, Vincent P; Conrod, Patricia J; Conzelmann, Annette; Crivello, Fabrice; Davey, Christopher G; Dickie, Erin W; Ehrlich, Stefan; Van't Ent, Dennis; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Fuentes-Claramonte, Paola; de Geus, Eco Jc; Di Giorgio, Annabella; Glahn, David C; Gotlib, Ian H; Grabe, Hans J; Gruber, Oliver; Gruner, Patricia; Gur, Raquel E; Gur, Ruben C; Gurholt, Tiril P; de Haan, Lieuwe; Haatveit, Beathe; Harrison, Ben J; Hartman, Catharina A; Hatton, Sean N; Heslenfeld, Dirk J; van den Heuvel, Odile A; Hickie, Ian B; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony C; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kalnin, Andrew J; Karolinska Schizophrenia Project (KaSP) Consortium; Klein, Marieke; Koenders, Laura; Kolskår, Knut K; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lazaro, Luisa; Lebedeva, Irina S; Lee, Phil H; Lochner, Christine; Machielsen, Marise Wj; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Brenna C; McDonald, Colm; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; van der Meer, Dennis; Menchón, José M; Naaijen, Jilly; Nyberg, Lars; Oosterlaan, Jaap; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Radua, Joaquim; Reif, Andreas; Richard, Geneviève; Roffman, Joshua L; Rosa, Pedro Gp; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Sim, Kang; Simmons, Andrew; Smoller, Jordan W; Sommer, Iris E; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Szeszko, Philip R; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Trollor, Julian N; Uhlmann, Anne; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Wang, Lei; Wang, Yang; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather C; Williams, Steven Cr; Wittfeld, Katharina; Wolf, Daniel H; Wright, Margaret J; Yoncheva, Yuliya N; Zanetti, Marcus V; Ziegler, Georg C; de Zubicaray, Greig I; Thompson, Paul M; Crone, Eveline A; Frangou, Sophia; Tamnes, Christian K | Human brain mapping. | 2020 Oct 12; | 33044802 | |
| Structural neuroimaging biomarkers for obsessive-compulsive disorder in the ENIGMA-OCD consortium: medication matters. | Bruin, Willem B; Taylor, Luke; Thomas, Rajat M; Shock, Jonathan P; Zhutovsky, Paul; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Assogna, Francesca; Benedetti, Francesco; Beucke, Jan C; Boedhoe, Premika S W; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Brennan, Brian P; Buitelaar, Jan K; Calvo, Rosa; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Ely, Benjamin A; Feusner, Jamie D; Fitzgerald, Kate D; Fouche, Jean-Paul; Fridgeirsson, Egill A; Gruner, Patricia; Gürsel, Deniz A; Hauser, Tobias U; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Hu, Hao; Huyser, Chaim; Ivanov, Iliyan; James, Anthony; Jaspers-Fayer, Fern; Kathmann, Norbert; Kaufmann, Christian; Koch, Kathrin; Kuno, Masaru; Kvale, Gerd; Kwon, Jun Soo; Liu, Yanni; Lochner, Christine; Lázaro, Luisa; Marques, Paulo; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Moreira, Pedro S; Morer, Astrid; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika L; O'Neill, Joseph; Pariente, Jose C; Perriello, Chris; Piacentini, John; Piras, Fabrizio; Piras, Federica; Reddy, Y C Janardhan; Rus-Oswald, Oana G; Sakai, Yuki; Sato, João R; Schmaal, Lianne; Shimizu, Eiji; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Tolin, David F; Venkatasubramanian, Ganesan; Wang, Zhen; Yun, Je-Yeon; van Rooij, Daan; ENIGMA-OCD Working Group; Thompson, Paul M; van den Heuvel, Odile A; Stein, Dan J; van Wingen, Guido A | Translational psychiatry. | 2020 Oct 08; | 33033241 | |
| Identifiers.org: Compact Identifier services in the cloud. | Bernal-Llinares, Manuel; Ferrer-Gómez, Javier; Juty, Nick; Goble, Carole; Wimalaratne, Sarala M; Hermjakob, Henning | Bioinformatics (Oxford, England) | 2021 07 19 | 33031499 | |
| Neuroimaging Association Scores: reliability and validity of aggregate measures of brain structural features linked to mental disorders in youth. | Axelrud, Luiza Kvitko; Simioni, André Rafael; Pine, Daniel Samuel; Winkler, Anderson Marcelo; Pan, Pedro Mario; Sato, João Ricardo; Zugman, André; Parker, Nadine; Picon, Felipe; Jackowski, Andrea; Hoexter, Marcelo Queiroz; IMAGEN Consortium; Barker, Gareth; Martinot, Jean-Luc; Martinot, Marie Laure Paillère; Satterthwaite, Theodore; Rohde, Luis Augusto; Milham, Michael; Barker, Edward Dylan; Salum, Giovanni Abrahão | European child & adolescent psychiatry | 2021 Dec | 33030612 | |
| Intelligence, educational attainment, and brain structure in those at familial high-risk for schizophrenia or bipolar disorder. | de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Alonso-Lana, Silvia; Bearden, Carrie E; Bertolino, Alessandro; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Canales-Rodríguez, Erick J; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Del Mar Bonnin, Caterina; Demro, Caroline; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fatjó-Vilas, Mar; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goikolea, Jose M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hidiroglu Ongun, Ceren; Hillegers, Manon H J; Houenou, Josselin; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Nabulsi, Leila; Newport, Jason; Olman, Cheryl A; van Os, Jim; Overs, Bronwyn J; Ozerdem, Aysegul; Pergola, Giulio; Picchioni, Marco M; Piguet, Camille; Pomarol-Clotet, Edith; Radua, Joaquim; Ramsay, Ian S; Richter, Anja; Roberts, Gloria; Salvador, Raymond; Saricicek Aydogan, Aybala; Sarró, Salvador; Schofield, Peter R; Simsek, Esma M; Simsek, Fatma; Soares, Jair C; Sponheim, Scott R; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Vieta, Eduard; Walter, Henrik; Weinberger, Daniel R; Whalley, Heather C; Wu, Mon-Ju; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; Thomopoulos, Sophia I; van Erp, Theo G M; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E M | Human brain mapping. | 2020 Oct 07; | 33027543 | |
| Intracranial and subcortical volumes in adolescents with early-onset psychosis: A multisite mega-analysis from the ENIGMA consortium. | Gurholt, Tiril P; Lonning, Vera; Nerland, Stener; Jørgensen, Kjetil N; Haukvik, Unn K; Alloza, Clara; Arango, Celso; Barth, Claudia; Bearden, Carrie E; Berk, Michael; Bohman, Hannes; Dandash, Orwa; Díaz-Caneja, Covadonga M; Edbom, Carl T; van Erp, Theo G M; Fett, Anne-Kathrin J; Frangou, Sophia; Goldstein, Benjamin I; Grigorian, Anahit; Jahanshad, Neda; James, Anthony C; Janssen, Joost; Johannessen, Cecilie; Karlsgodt, Katherine H; Kempton, Matthew J; Kochunov, Peter; Krabbendam, Lydia; Kyriakopoulos, Marinos; Lundberg, Mathias; MacIntosh, Bradley J; Rund, Bjørn Rishovd; Smelror, Runar E; Sultan, Alysha; Tamnes, Christian K; Thomopoulos, Sophia I; Vajdi, Ariana; Wedervang-Resell, Kirsten; Myhre, Anne M; Andreassen, Ole A; Thompson, Paul M; Agartz, Ingrid; ENIGMA-EOP Working Group | Human brain mapping | 2022 Jan | 33017498 | |
| Investigating genetic drivers of dermatomyositis pathogenesis using meta-analysis. | Aljabban, Jihad; Syed, Saad; Syed, Sharjeel; Rohr, Michael; Weisleder, Noah; McElhanon, Kevin E; Hasan, Laith; Safeer, Laraib; Hoffman, Kalyn; Aljabban, Nabeal; Mukhtar, Mohamed; Adapa, Nikhil; Allarakhia, Zahir; Panahiazar, Maryam; Neuhaus, Isaac; Kim, Susan; Hadley, Dexter; Jarjour, Wael | Heliyon | 2020 Sep | 33015383 | |
| Substance Use Initiation, Particularly Alcohol, in Drug-Naive Adolescents: Possible Predictors and Consequences From a Large Cohort Naturalistic Study. | Ivanov, Iliyan; Parvaz, Muhammad A; Velthorst, Eva; Shaik, Riaz B; Sandin, Sven; Gan, Gabriela; Spechler, Philip; Albaugh, Matthew D; Chaarani, Bader; Mackey, Scott; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; IMAGEN Consortium | Journal of the American Academy of Child and Adolescent Psychiatry | 2021 05 | 33011213 | |
| A semantic similarity based methodology for predicting protein-protein interactions: Evaluation with P53-interacting kinases. | Cox, Steven; Dong, Xialan; Rai, Ruhi; Christopherson, Laura; Zheng, Weifan; Tropsha, Alexander; Schmitt, Charles | Journal of biomedical informatics | 2020 11 | 33007449 | |
| Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective. | Erdemir, Ahmet; Mulugeta, Lealem; Ku, Joy P; Drach, Andrew; Horner, Marc; Morrison, Tina M; Peng, Grace C Y; Vadigepalli, Rajanikanth; Lytton, William W; Myers Jr, Jerry G | Journal of translational medicine. | 2020 09 29; | 32993675 | |
| Graph-based regularization for regression problems with alignment and highly-correlated designs. | Li, Yuan; Mark, Benjamin; Raskutti, Garvesh; Willett, Rebecca; Song, Hyebin; Neiman, David | SIAM journal on mathematics of data science. | 2020; | 32968717 | |
| Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults. | Hofer, Edith; Roshchupkin, Gennady V; Adams, Hieab H H; Knol, Maria J; Lin, Honghuang; Li, Shuo; Zare, Habil; Ahmad, Shahzad; Armstrong, Nicola J; Satizabal, Claudia L; Bernard, Manon; Bis, Joshua C; Gillespie, Nathan A; Luciano, Michelle; Mishra, Aniket; Scholz, Markus; Teumer, Alexander; Xia, Rui; Jian, Xueqiu; Mosley, Thomas H; Saba, Yasaman; Pirpamer, Lukas; Seiler, Stephan; Becker, James T; Carmichael, Owen; Rotter, Jerome I; Psaty, Bruce M; Lopez, Oscar L; Amin, Najaf; van der Lee, Sven J; Yang, Qiong; Himali, Jayandra J; Maillard, Pauline; Beiser, Alexa S; DeCarli, Charles; Karama, Sherif; Lewis, Lindsay; Harris, Mat; Bastin, Mark E; Deary, Ian J; Veronica Witte, A; Beyer, Frauke; Loeffler, Markus; Mather, Karen A; Schofield, Peter R; Thalamuthu, Anbupalam; Kwok, John B; Wright, Margaret J; Ames, David; Trollor, Julian; Jiang, Jiyang; Brodaty, Henry; Wen, Wei; Vernooij, Meike W; Hofman, Albert; Uitterlinden, André G; Niessen, Wiro J; Wittfeld, Katharina; Bülow, Robin; Völker, Uwe; Pausova, Zdenka; Bruce Pike, G; Maingault, Sophie; Crivello, Fabrice; Tzourio, Christophe; Amouyel, Philippe; Mazoyer, Bernard; Neale, Michael C; Franz, Carol E; Lyons, Michael J; Panizzon, Matthew S; Andreassen, Ole A; Dale, Anders M; Logue, Mark; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie N; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Pizzagalli, Fabrizio; Stein, Jason L; Thompson, Paul M; Medland, Sarah E; ENIGMA consortium; Sachdev, Perminder S; Kremen, William S; Wardlaw, Joanna M; Villringer, Arno; van Duijn, Cornelia M; Grabe, Hans J; Longstreth Jr, William T; Fornage, Myriam; Paus, Tomas; Debette, Stephanie; Arfan Ikram, M; Schmidt, Helena; Schmidt, Reinhold; Seshadri, Sudha | Nature communications. | 2020 09 22; | 32963231 | |
| PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments. | Liu, Peng; Soukup, Alexandra A; Bresnick, Emery H; Dewey, Colin N; Kele?, Sündüz | Genome research. | 2020 Nov; | 32958497 | |
| The reliability and heritability of cortical folds and their genetic correlations across hemispheres. | Pizzagalli, Fabrizio; Auzias, Guillaume; Yang, Qifan; Mathias, Samuel R; Faskowitz, Joshua; Boyd, Joshua D; Amini, Armand; Rivière, Denis; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Mangin, Jean-François; Glahn, David C; Blangero, John; Wright, Margaret J; Thompson, Paul M; Kochunov, Peter; Jahanshad, Neda | Communications biology. | 2020 Sep 15; | 32934300 | |
| Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. | Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Cristea, Ileana M; Corrales, Fernando J; Lindskog, Cecilia; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen R; Snyder, Michael P; Baker, Mark S; Bandeira, Nuno; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W | Journal of proteome research. | 2020 Dec 04; | 32931287 | |
| MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. | Choi, Meena; Carver, Jeremy; Chiva, Cristina; Tzouros, Manuel; Huang, Ting; Tsai, Tsung-Heng; Pullman, Benjamin; Bernhardt, Oliver M; Hüttenhain, Ruth; Teo, Guo Ci; Perez-Riverol, Yasset; Muntel, Jan; Müller, Maik; Goetze, Sandra; Pavlou, Maria; Verschueren, Erik; Wollscheid, Bernd; Nesvizhskii, Alexey I; Reiter, Lukas; Dunkley, Tom; Sabidó, Eduard; Bandeira, Nuno; Vitek, Olga | Nature methods. | 2020 Oct; | 32929271 | |
| Suitability of administrative claims databases for bariatric surgery research - is the glass half-full or half-empty? | Li, Xiaojuan; Lewis, Kristina H; Callaway, Katherine; Wharam, J Frank; Toh, Sengwee | BMC medical research methodology. | 2020 Sep 07; | 32894060 | |
| Ten simple rules for an inclusive summer coding program for non-computer-science undergraduates. | Pennings, Pleuni; Banuelos, Mayra M; Catalan, Francisca L; Caudill, Victoria R; Chakalov, Bozhidar; Hernandez, Selena; Jones, Jeanice; Okorie, Chinomnso; Modrek, Sepideh; Rohlfs, Rori; Adelstein, Nicole | PLoS computational biology | 2020 09 | 32881872 | |
| Literature-Wide Association Studies (LWAS) for a Rare Disease: Drug Repurposing for Inflammatory Breast Cancer. | Ji, Xiaojia; Jin, Chunming; Dong, Xialan; Dixon, Maria S; Williams, Kevin P; Zheng, Weifan | Molecules (Basel, Switzerland) | 2020 Aug 28 | 32872166 | |
| mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements. | Bhamber, Ranjeet S; Jankevics, Andris; Deutsch, Eric W; Jones, Andrew R; Dowsey, Andrew W | Journal of proteome research | 2021 Jan 01 | 32864978 | |
| Neural Correlates of Adolescent Irritability and Its Comorbidity With Psychiatric Disorders. | Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Spechler, Philip A; Potter, Alexandra; Banaschewski, Tobias; Millenet, Sabina; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Paus, Tomáš; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Stringaris, Argyris; Higgins, Stephen T; Schumann, Gunter; Garavan, Hugh; Althoff, Robert R; IMAGEN Consortium | Journal of the American Academy of Child and Adolescent Psychiatry | 2020 12 | 32860907 | |
| Compressive Big Data Analytics: An ensemble meta-algorithm for high-dimensional multisource datasets. | Marino, Simeone; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Toga, Arthur W; Zhao, Lu; Jian, Yingsi; Yang, Yichen; Chen, Yehu; Wu, Qiucheng; Wild, Jessica; Cummings, Brandon; Dinov, Ivo D | PloS one. | 2020; | 32857775 | |
| Common and gender-specific associations with cocaine use on gray matter volume: Data from the ENIGMA addiction working group. | Rabin, Rachel A; Mackey, Scott; Parvaz, Muhammad A; Cousijn, Janna; Li, Chiang-Shan; Pearlson, Godfrey; Schmaal, Lianne; Sinha, Rajita; Stein, Elliot; Veltman, Dick; Thompson, Paul M; Conrod, Patricia; Garavan, Hugh; Alia-Klein, Nelly; Goldstein, Rita Z | Human brain mapping | 2022 Jan | 32857473 | |
| Feature-based molecular networking in the GNPS analysis environment. | Nothias, Louis-Félix; Petras, Daniel; Schmid, Robin; Dührkop, Kai; Rainer, Johannes; Sarvepalli, Abinesh; Protsyuk, Ivan; Ernst, Madeleine; Tsugawa, Hiroshi; Fleischauer, Markus; Aicheler, Fabian; Aksenov, Alexander A; Alka, Oliver; Allard, Pierre-Marie; Barsch, Aiko; Cachet, Xavier; Caraballo-Rodriguez, Andres Mauricio; Da Silva, Ricardo R; Dang, Tam; Garg, Neha; Gauglitz, Julia M; Gurevich, Alexey; Isaac, Giorgis; Jarmusch, Alan K; Kameník, Zden?k; Kang, Kyo Bin; Kessler, Nikolas; Koester, Irina; Korf, Ansgar; Le Gouellec, Audrey; Ludwig, Marcus; Martin H, Christian; McCall, Laura-Isobel; McSayles, Jonathan; Meyer, Sven W; Mohimani, Hosein; Morsy, Mustafa; Moyne, Oriane; Neumann, Steffen; Neuweger, Heiko; Nguyen, Ngoc Hung; Nothias-Esposito, Melissa; Paolini, Julien; Phelan, Vanessa V; Pluskal, Tomá?; Quinn, Robert A; Rogers, Simon; Shrestha, Bindesh; Tripathi, Anupriya; van der Hooft, Justin J J; Vargas, Fernando; Weldon, Kelly C; Witting, Michael; Yang, Heejung; Zhang, Zheng; Zubeil, Florian; Kohlbacher, Oliver; Böcker, Sebastian; Alexandrov, Theodore; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C | Nature methods. | 2020 09; | 32839597 | |
| Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis. | Adams, Taylor S; Schupp, Jonas C; Poli, Sergio; Ayaub, Ehab A; Neumark, Nir; Ahangari, Farida; Chu, Sarah G; Raby, Benjamin A; DeIuliis, Giuseppe; Januszyk, Michael; Duan, Qiaonan; Arnett, Heather A; Siddiqui, Asim; Washko, George R; Homer, Robert; Yan, Xiting; Rosas, Ivan O; Kaminski, Naftali | Science advances | 2020 07 | 32832599 | |
| Neuroimaging PheWAS (Phenome-Wide Association Study): A Free Cloud-Computing Platform for Big-Data, Brain-Wide Imaging Association Studies. | Zhao, Lu; Batta, Ishaan; Matloff, William; O'Driscoll, Caroline; Hobel, Samuel; Toga, Arthur W | Neuroinformatics | 2020 Aug 21 | 32822005 | |
| DataRemix: a universal data transformation for optimal inference from gene expression datasets. | Mao, Weiguang; Rahimikollu, Javad; Hausler, Ryan; Chikina, Maria | Bioinformatics (Oxford, England) | 2021 05 17 | 32821903 | |
| A review investigating the relationship between cannabis use and adolescent cognitive functioning. | Cyrus, Elena; Coudray, Makella S; Kiplagat, Sandra; Mariano, Yandra; Noel, Ines; Galea, Jerome T; Hadley, Dexter; Dévieux, Jessy G; Wagner, Eric | Current opinion in psychology | 2021 04 | 32818908 | |
| White matter abnormalities across different epilepsy syndromes in adults: an ENIGMA-Epilepsy study. | Hatton, Sean N; Huynh, Khoa H; Bonilha, Leonardo; Abela, Eugenio; Alhusaini, Saud; Altmann, Andre; Alvim, Marina K M; Balachandra, Akshara R; Bartolini, Emanuele; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris; Bargallo, Núria; Caldairou, Benoit; Caligiuri, Maria E; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Davoodi-Bojd, Esmaeil; Desmond, Patricia M; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Duncan, John S; Focke, Niels K; Foley, Sonya F; Gambardella, Antonio; Gleichgerrcht, Ezequiel; Guerrini, Renzo; Hamandi, Khalid; Ishikawa, Akari; Keller, Simon S; Kochunov, Peter V; Kotikalapudi, Raviteja; Kreilkamp, Barbara A K; Kwan, Patrick; Labate, Angelo; Langner, Soenke; Lenge, Matteo; Liu, Min; Lui, Elaine; Martin, Pascal; Mascalchi, Mario; Moreira, José C V; Morita-Sherman, Marcia E; O'Brien, Terence J; Pardoe, Heath R; Pariente, José C; Ribeiro, Letícia F; Richardson, Mark P; Rocha, Cristiane S; Rodríguez-Cruces, Raúl; Rosenow, Felix; Severino, Mariasavina; Sinclair, Benjamin; Soltanian-Zadeh, Hamid; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Tortora, Domenico; Velakoulis, Dennis; Vezzani, Annamaria; Vivash, Lucy; von Podewils, Felix; Vos, Sjoerd B; Weber, Bernd; Winston, Gavin P; Yasuda, Clarissa L; Zhu, Alyssa H; Thompson, Paul M; Whelan, Christopher D; Jahanshad, Neda; Sisodiya, Sanjay M; McDonald, Carrie R | Brain : a journal of neurology. | 2020 Aug 01; | 32814957 | |
| Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types. | Funk, Cory C; Casella, Alex M; Jung, Segun; Richards, Matthew A; Rodriguez, Alex; Shannon, Paul; Donovan-Maiye, Rory; Heavner, Ben; Chard, Kyle; Xiao, Yukai; Glusman, Gustavo; Ertekin-Taner, Nilufer; Golde, Todd E; Toga, Arthur; Hood, Leroy; Van Horn, John D; Kesselman, Carl; Foster, Ian; Madduri, Ravi; Price, Nathan D; Ament, Seth A | Cell reports. | 2020 Aug 18; | 32814038 | |
| Brain structure and habitat: Do the brains of our children tell us where they have been brought up? | Kühn, Simone; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Meyer-Lindenberg, Andreas; Gallinat, Jürgen | NeuroImage | 2020 11 15 | 32800993 | |
| The clinical utility of proton magnetic resonance spectroscopy in traumatic brain injury: recommendations from the ENIGMA MRS working group. | Bartnik-Olson, Brenda L; Alger, Jeffry R; Babikian, Talin; Harris, Ashley D; Holshouser, Barbara; Kirov, Ivan I; Maudsley, Andrew A; Thompson, Paul M; Dennis, Emily L; Tate, David F; Wilde, Elisabeth A; Lin, Alexander | Brain imaging and behavior | 2020 Aug 14 | 32797399 | |
| Exploration of PCORnet Data Resources for Assessing Use of Molecular-Guided Cancer Treatment. | Carnahan, Ryan M; Waitman, Lemuel R; Charlton, Mary E; Schroeder, Mary C; Bossler, Aaron D; Campbell, W Scott; Campbell, James R; McDowell, Bradley D; Smith, Nicholas C; Gryzlak, Brian M; Chrischilles, Elizabeth A | JCO clinical cancer informatics. | 2020 Aug; | 32795185 | |
| Deep neural networks enable quantitative movement analysis using single-camera videos. | Kidzi?ski, ?ukasz; Yang, Bryan; Hicks, Jennifer L; Rajagopal, Apoorva; Delp, Scott L; Schwartz, Michael H | Nature communications. | 2020 08 13; | 32792511 | |
| Correction to "Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold". | Ferguson, Fleur M; Liu, Yan; Harshbarger, Wayne; Huang, Ling; Wang, Jinhua; Deng, Xianming; Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander; Muthuswamy, Senthil; Westover, Kenneth D; Gray, Nathanael S | Journal of medicinal chemistry | 2020 Sep 10 | 32790356 | |
| A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia. | Luo, Yuan; Eran, Alal; Palmer, Nathan; Avillach, Paul; Levy-Moonshine, Ami; Szolovits, Peter; Kohane, Isaac S | Nature medicine. | 2020 Sep; | 32778826 | |
| Cross-Modal Data Programming Enables Rapid Medical Machine Learning. | Dunnmon, Jared A; Ratner, Alexander J; Saab, Khaled; Khandwala, Nishith; Markert, Matthew; Sagreiya, Hersh; Goldman, Roger; Lee-Messer, Christopher; Lungren, Matthew P; Rubin, Daniel L; Ré, Christopher | Patterns (New York, N.Y.). | 2020 May 08; | 32776018 | |
| Longitudinal associations between amygdala reactivity and cannabis use in a large sample of adolescents. | Spechler, Philip A; Chaarani, Bader; Orr, Catherine; Albaugh, Matthew D; Fontaine, Nicholas R; Higgins, Stephen T; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Artiges, Eric; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh | Psychopharmacology | 2020 Nov | 32772145 | |
| ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants. | Manjunath, Mohith; Zhang, Yi; Zhang, Shilu; Roy, Sushmita; Perez-Pinera, Pablo; Song, Jun S | Frontiers in genetics. | 2020; | 32765587 | |
| Notifications to Improve Engagement With an Alcohol Reduction App: Protocol for a Micro-Randomized Trial. | Bell, Lauren; Garnett, Claire; Qian, Tianchen; Perski, Olga; Potts, Henry W W; Williamson, Elizabeth | JMIR research protocols. | 2020 Aug 07; | 32763878 | |
| Performing Group Difference Testing on Graph Structured Data from GANs: Analysis and Applications in Neuroimaging. | Dinh, Tuan Quang; Xiong, Yunyang; Huang, Zhichun; Vo, Tien; Mishra, Akshay; Kim, Won Hwa; Ravi, Sathya; Singh, Vikas | IEEE transactions on pattern analysis and machine intelligence | 2020 Aug 07 | 32763848 | |
| Reproducible Machine Learning Methods for Lung Cancer Detection Using Computed Tomography Images: Algorithm Development and Validation. | Yu, Kun-Hsing; Lee, Tsung-Lu Michael; Yen, Ming-Hsuan; Kou, S C; Rosen, Bruce; Chiang, Jung-Hsien; Kohane, Isaac S | Journal of medical Internet research | 2020 08 05 | 32755895 | |
| Chemical Biology Toolkit for DCLK1 Reveals Connection to RNA Processing. | Liu, Yan; Ferguson, Fleur M; Li, Lianbo; Kuljanin, Miljan; Mills, Caitlin E; Subramanian, Kartik; Harshbarger, Wayne; Gondi, Sudershan; Wang, Jinhua; Sorger, Peter K; Mancias, Joseph D; Gray, Nathanael S; Westover, Kenneth D | Cell chemical biology. | 2020 Aug 04; | 32755567 | |
| Behavioral Differences Between Subject Groups Identified Using Smart Homes and Change Point Detection. | Sprint, Gina; Cook, Diane J; Fritz, Roschelle | IEEE journal of biomedical and health informatics | 2021 Feb | 32750924 | |
| Ethical issues in global neuroimaging genetics collaborations. | Palk, Andrea; Illes, Judy; Thompson, Paul M; Stein, Dan J | NeuroImage. | 2020 11 01; | 32736000 | |
| Challenges and opportunities for neuroimaging in young patients with traumatic brain injury: a coordinated effort towards advancing discovery from the ENIGMA pediatric moderate/severe TBI group. | Dennis, Emily L; Caeyenberghs, Karen; Asarnow, Robert F; Babikian, Talin; Bartnik-Olson, Brenda; Bigler, Erin D; Figaji, Anthony; Giza, Christopher C; Goodrich-Hunsaker, Naomi J; Hodges, Cooper B; Hoskinson, Kristen R; Königs, Marsh; Levin, Harvey S; Lindsey, Hannah M; Livny, Abigail; Max, Jeffrey E; Merkley, Tricia L; Newsome, Mary R; Olsen, Alexander; Ryan, Nicholas P; Spruiell, Matthew S; Suskauer, Stacy J; Thomopoulos, Sophia I; Ware, Ashley L; Watson, Christopher G; Wheeler, Anne L; Yeates, Keith Owen; Zielinski, Brandon A; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A | Brain imaging and behavior | 2020 Jul 30 | 32734437 | |
| The anatomy of a distributed predictive modeling framework: online learning, blockchain network, and consensus algorithm. | Kuo, Tsung-Ting | JAMIA open | 2020 Jul | 32734160 | |
| What we learn about bipolar disorder from large-scale neuroimaging: Findings and future directions from the ENIGMA Bipolar Disorder Working Group. | Ching, Christopher R K; Hibar, Derrek P; Gurholt, Tiril P; Nunes, Abraham; Thomopoulos, Sophia I; Abé, Christoph; Agartz, Ingrid; Brouwer, Rachel M; Cannon, Dara M; de Zwarte, Sonja M C; Eyler, Lisa T; Favre, Pauline; Hajek, Tomas; Haukvik, Unn K; Houenou, Josselin; Landén, Mikael; Lett, Tristram A; McDonald, Colm; Nabulsi, Leila; Patel, Yash; Pauling, Melissa E; Paus, Tomas; Radua, Joaquim; Soeiro-de-Souza, Marcio G; Tronchin, Giulia; van Haren, Neeltje E M; Vieta, Eduard; Walter, Henrik; Zeng, Ling-Li; Alda, Martin; Almeida, Jorge; Alnaes, Dag; Alonso-Lana, Silvia; Altimus, Cara; Bauer, Michael; Baune, Bernhard T; Bearden, Carrie E; Bellani, Marcella; Benedetti, Francesco; Berk, Michael; Bilderbeck, Amy C; Blumberg, Hilary P; Bøen, Erlend; Bollettini, Irene; Del Mar Bonnin, Caterina; Brambilla, Paolo; Canales-Rodríguez, Erick J; Caseras, Xavier; Dandash, Orwa; Dannlowski, Udo; Delvecchio, Giuseppe; Díaz-Zuluaga, Ana M; Dima, Danai; Duchesnay, Édouard; Elvsåshagen, Torbjørn; Fears, Scott C; Frangou, Sophia; Fullerton, Janice M; Glahn, David C; Goikolea, Jose M; Green, Melissa J; Grotegerd, Dominik; Gruber, Oliver; Haarman, Bartholomeus C M; Henry, Chantal; Howells, Fleur M; Ives-Deliperi, Victoria; Jansen, Andreas; Kircher, Tilo T J; Knöchel, Christian; Kramer, Bernd; Lafer, Beny; López-Jaramillo, Carlos; Machado-Vieira, Rodrigo; MacIntosh, Bradley J; Melloni, Elisa M T; Mitchell, Philip B; Nenadic, Igor; Nery, Fabiano; Nugent, Allison C; Oertel, Viola; Ophoff, Roel A; Ota, Miho; Overs, Bronwyn J; Pham, Daniel L; Phillips, Mary L; Pineda-Zapata, Julian A; Poletti, Sara; Polosan, Mircea; Pomarol-Clotet, Edith; Pouchon, Arnaud; Quidé, Yann; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Schene, Aart H; Sim, Kang; Soares, Jair C; Stäblein, Michael; Stein, Dan J; Tamnes, Christian K; Thomaidis, Georgios V; Upegui, Cristian Vargas; Veltman, Dick J; Wessa, Michèle; Westlye, Lars T; Whalley, Heather C; Wolf, Daniel H; Wu, Mon-Ju; Yatham, Lakshmi N; Zarate, Carlos A; Thompson, Paul M; Andreassen, Ole A; ENIGMA Bipolar Disorder Working Group | Human brain mapping | 2022 Jan | 32725849 | |
| The ENIGMA sports injury working group:- an international collaboration to further our understanding of sport-related brain injury. | Koerte, Inga K; Esopenko, Carrie; Hinds 2nd, Sidney R; Shenton, Martha E; Bonke, Elena M; Bazarian, Jeffrey J; Bickart, Kevin C; Bigler, Erin D; Bouix, Sylvain; Buckley, Thomas A; Choe, Meeryo C; Echlin, Paul S; Gill, Jessica; Giza, Christopher C; Hayes, Jasmeet; Hodges, Cooper B; Irimia, Andrei; Johnson, Paula K; Kenney, Kimbra; Levin, Harvey S; Lin, Alexander P; Lindsey, Hannah M; Lipton, Michael L; Max, Jeffrey E; Mayer, Andrew R; Meier, Timothy B; Merchant-Borna, Kian; Merkley, Tricia L; Mills, Brian D; Newsome, Mary R; Porfido, Tara; Stephens, Jaclyn A; Tartaglia, Maria Carmela; Ware, Ashley L; Zafonte, Ross D; Zeineh, Michael M; Thompson, Paul M; Tate, David F; Dennis, Emily L; Wilde, Elisabeth A; Baron, David | Brain imaging and behavior. | 2020 Jul 27; | 32720179 | |
| Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services. | Krissaane, Inès; De Niz, Carlos; Gutiérrez-Sacristán, Alba; Korodi, Gabor; Ede, Nneka; Kumar, Ranjay; Lyons, Jessica; Manrai, Arjun; Patel, Chirag; Kohane, Isaac; Avillach, Paul | Journal of the American Medical Informatics Association : JAMIA | 2020 09 01 | 32719837 | |
| iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching. | Kuo, Tsung-Ting; Jiang, Xiaoqian; Tang, Haixu; Wang, XiaoFeng; Bath, Tyler; Bu, Diyue; Wang, Lei; Harmanci, Arif; Zhang, Shaojie; Zhi, Degui; Sofia, Heidi J; Ohno-Machado, Lucila | BMC medical genomics. | 2020 Jul 21; | 32693816 | |
| Using blockchain to log genome dataset access: efficient storage and query. | Gürsoy, Gamze; Bjornson, Robert; Green, Molly E; Gerstein, Mark | BMC medical genomics. | 2020 Jul 21; | 32693796 | |
| Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes. | Shafin, Kishwar; Pesout, Trevor; Lorig-Roach, Ryan; Haukness, Marina; Olsen, Hugh E; Bosworth, Colleen; Armstrong, Joel; Tigyi, Kristof; Maurer, Nicholas; Koren, Sergey; Sedlazeck, Fritz J; Marschall, Tobias; Mayes, Simon; Costa, Vania; Zook, Justin M; Liu, Kelvin J; Kilburn, Duncan; Sorensen, Melanie; Munson, Katy M; Vollger, Mitchell R; Monlong, Jean; Garrison, Erik; Eichler, Evan E; Salama, Sofie; Haussler, David; Green, Richard E; Akeson, Mark; Phillippy, Adam; Miga, Karen H; Carnevali, Paolo; Jain, Miten; Paten, Benedict | Nature biotechnology. | 2020 09; | 32686750 | |
| Applying surface-based morphometry to study ventricular abnormalities of cognitively unimpaired subjects prior to clinically significant memory decline. | Dong, Qunxi; Zhang, Wen; Stonnington, Cynthia M; Wu, Jianfeng; Gutman, Boris A; Chen, Kewei; Su, Yi; Baxter, Leslie C; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, Yalin | NeuroImage. Clinical. | 2020; | 32683323 | |
| Learning from history: do not flatten the curve of antiviral research! | Bobrowski, Tesia; Melo-Filho, Cleber C; Korn, Daniel; Alves, Vinicius M; Popov, Konstantin I; Auerbach, Scott; Schmitt, Charles; Moorman, Nathaniel J; Muratov, Eugene N; Tropsha, Alexander | Drug discovery today. | 2020 Jul 15; | 32679173 | |
| SCAM Detective: Accurate Predictor of Small, Colloidally Aggregating Molecules. | Alves, Vinicius M; Capuzzi, Stephen J; Braga, Rodolpho C; Korn, Daniel; Hochuli, Joshua E; Bowler, Kyle H; Yasgar, Adam; Rai, Ganesha; Simeonov, Anton; Muratov, Eugene N; Zakharov, Alexey V; Tropsha, Alexander | Journal of chemical information and modeling | 2020 08 24 | 32678597 | |
| Pred-Skin: A Web Portal for Accurate Prediction of Human Skin Sensitizers. | Borba, Joyce V B; Braga, Rodolpho C; Alves, Vinicius M; Muratov, Eugene N; Kleinstreuer, Nicole; Tropsha, Alexander; Andrade, Carolina Horta | Chemical research in toxicology | 2021 02 15 | 32673477 | |
| Age and morphology of posterior communicating artery aneurysms. | Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose | Scientific reports. | 2020 Jul 14; | 32665589 | |
| Spatial domain analysis predicts risk of colorectal cancer recurrence and infers associated tumor microenvironment networks. | Uttam, Shikhar; Stern, Andrew M; Sevinsky, Christopher J; Furman, Samantha; Pullara, Filippo; Spagnolo, Daniel; Nguyen, Luong; Gough, Albert; Ginty, Fiona; Lansing Taylor, D; Chakra Chennubhotla, S | Nature communications. | 2020 07 14; | 32665557 | |
| Telomere-to-telomere assembly of a complete human X chromosome. | Miga, Karen H; Koren, Sergey; Rhie, Arang; Vollger, Mitchell R; Gershman, Ariel; Bzikadze, Andrey; Brooks, Shelise; Howe, Edmund; Porubsky, David; Logsdon, Glennis A; Schneider, Valerie A; Potapova, Tamara; Wood, Jonathan; Chow, William; Armstrong, Joel; | Nature. | 2020 09; | 32663838 | |
| Testing the effectiveness of physical activity advice delivered via text messaging vs. human phone advisors in a Latino population: The On The Move randomized controlled trial design and methods. | King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Espinosa, Patricia Rodriguez; Garcia, Dulce; Hauser, Michelle; Done, Monica; Patel, Michele L; Parikh, Nina M; Corral, Cecilia; Ahn, David K | Contemporary clinical trials | 2020 08 | 32659437 | |
| Privacy-preserving construction of generalized linear mixed model for biomedical computation. | Zhu, Rui; Jiang, Chao; Wang, Xiaofeng; Wang, Shuang; Zheng, Hao; Tang, Haixu | Bioinformatics (Oxford, England). | 2020 Jul 01; | 32657380 | |
| Disruption and Compensation of Sulcation-based Covariance Networks in Neonatal Brain Growth after Perinatal Injury. | Kim, Sharon Y; Liu, Mengting; Hong, Seok-Jun; Toga, Arthur W; Barkovich, A James; Xu, Duan; Kim, Hosung | Cerebral cortex (New York, N.Y. : 1991) | 2020 11 03 | 32656563 | |
| How do substance use disorders compare to other psychiatric conditions on structural brain abnormalities? A cross-disorder meta-analytic comparison using the ENIGMA consortium findings. | Navarri, Xavier; Afzali, Mohammad H; Lavoie, Jacob; Sinha, Rajita; Stein, Dan J; Momenan, Reza; Veltman, Dick J; Korucuoglu, Ozlem; Sjoerds, Zsuzsika; van Holst, Ruth J; Hester, Rob; Orr, Catherine; Cousijn, Janna; Yucel, Murat; Lorenzetti, Valentina; Wiers, Reinout; Jahanshad, Neda; Glahn, David C; Thompson, Paul M; Mackey, Scott; Conrod, Patricia J | Human brain mapping | 2022 Jan | 32643841 | |
| Superior breast cancer metastasis risk stratification using an epithelial-mesenchymal-amoeboid transition gene signature. | Emad, Amin; Ray, Tania; Jensen, Tor W; Parat, Meera; Natrajan, Rachael; Sinha, Saurabh; Ray, Partha S | Breast cancer research : BCR. | 2020 Jul 08; | 32641077 | |
| Discovery of Synergistic and Antagonistic Drug Combinations against SARS-CoV-2 In Vitro. | Bobrowski, Tesia; Chen, Lu; Eastman, Richard T; Itkin, Zina; Shinn, Paul; Chen, Catherine; Guo, Hui; Zheng, Wei; Michael, Sam; Simeonov, Anton; Hall, Matthew D; Zakharov, Alexey V; Muratov, Eugene N | bioRxiv : the preprint server for biology. | 2020 Jun 30; | 32637956 | |
| ENIGMA-anxiety working group: Rationale for and organization of large-scale neuroimaging studies of anxiety disorders. | Bas-Hoogendam, Janna Marie; Groenewold, Nynke A; Aghajani, Moji; Freitag, Gabrielle F; Harrewijn, Anita; Hilbert, Kevin; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Veltman, Dick J; Winkler, Anderson M; Lueken, Ulrike; Pine, Daniel S; van der Wee, Nic J A; Stein, Dan J | Human brain mapping. | 2020 Jul 03; | 32618421 | |
| Physiological changes in sleep that affect fMRI inference. | Duyn, Jeff H; Ozbay, Pinar S; Chang, Catie; Picchioni, Dante | Current opinion in behavioral sciences. | 2020 Jun; | 32613032 | |
| COVID-KOP: Integrating Emerging COVID-19 Data with the ROBOKOP Database. | Korn, Daniel; Bobrowski, Tesia; Li, Michael; Kebede, Yaphet; Wang, Patrick; Owen, Phillips; Vaidya, Gaurav; Muratov, Eugene; Chirkova, Rada; Bizon, Chris; Tropsha, Alexander | ChemRxiv : the preprint server for chemistry. | 2020 Jun 18; | 32601612 | |
| The IMAGEN study: a decade of imaging genetics in adolescents. | Mascarell Mari?i?, Lea; Walter, Henrik; Rosenthal, Annika; Ripke, Stephan; Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Itterman, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Whelan, Robert; Kaminski, Jakob; Schumann, Gunter; Heinz, Andreas; IMAGEN consortium | Molecular psychiatry. | 2020 Nov; | 32601453 | |
| Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts. | Ding, Hongxu; Bailey, Andrew D; Jain, Miten; Olsen, Hugh; Paten, Benedict | Bioinformatics (Oxford, England). | 2020 Dec 08; | 32597959 | |
| Mega-analysis methods in ENIGMA: The experience of the generalized anxiety disorder working group. | Zugman, André; Harrewijn, Anita; Cardinale, Elise M; Zwiebel, Hannah; Freitag, Gabrielle F; Werwath, Katy E; Bas-Hoogendam, Janna M; Groenewold, Nynke A; Aghajani, Moji; Hilbert, Kevin; Cardoner, Narcis; Porta-Casteràs, Daniel; Gosnell, Savannah; Salas, Ramiro; Blair, Karina S; Blair, James R; Hammoud, Mira Z; Milad, Mohammed; Burkhouse, Katie; Phan, K Luan; Schroeder, Heidi K; Strawn, Jeffrey R; Beesdo-Baum, Katja; Thomopoulos, Sophia I; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Nielsen, Jared A; Buckner, Randy; Smoller, Jordan W; Mwangi, Benson; Soares, Jair C; Wu, Mon-Ju; Zunta-Soares, Giovana B; Jackowski, Andrea P; Pan, Pedro M; Salum, Giovanni A; Assaf, Michal; Diefenbach, Gretchen J; Brambilla, Paolo; Maggioni, Eleonora; Hofmann, David; Straube, Thomas; Andreescu, Carmen; Berta, Rachel; Tamburo, Erica; Price, Rebecca; Manfro, Gisele G; Critchley, Hugo D; Makovac, Elena; Mancini, Matteo; Meeten, Frances; Ottaviani, Cristina; Agosta, Federica; Canu, Elisa; Cividini, Camilla; Filippi, Massimo; Kosti?, Milutin; Munjiza, Ana; Filippi, Courtney A; Leibenluft, Ellen; Alberton, Bianca A V; Balderston, Nicholas L; Ernst, Monique; Grillon, Christian; Mujica-Parodi, Lilianne R; van Nieuwenhuizen, Helena; Fonzo, Gregory A; Paulus, Martin P; Stein, Murray B; Gur, Raquel E; Gur, Ruben C; Kaczkurkin, Antonia N; Larsen, Bart; Satterthwaite, Theodore D; Harper, Jennifer; Myers, Michael; Perino, Michael T; Yu, Qiongru; Sylvester, Chad M; Veltman, Dick J; Lueken, Ulrike; Van der Wee, Nic J A; Stein, Dan J; Jahanshad, Neda; Thompson, Paul M; Pine, Daniel S; Winkler, Anderson M | Human brain mapping. | 2020 Jun 29; | 32596977 | |
| Comparison of de-duplication methods used by WHO Global Antimicrobial Resistance Surveillance System (GLASS) and Japan Nosocomial Infections Surveillance (JANIS) in the surveillance of antimicrobial resistance. | Kajihara, Toshiki; Yahara, Koji; Stelling, John; Eremin, Sergey Romualdovich; Tornimbene, Barbara; Thamlikitkul, Visanu; Hirabayashi, Aki; Anzai, Eiko; Wakai, Satoyo; Matsunaga, Nobuaki; Hayakawa, Kayoko; Ohmagari, Norio; Sugai, Motoyuki; Shibayama, Keigo | PloS one. | 2020; | 32589639 | |
| Surveillance of antimicrobial resistance and evolving microbial populations in Vermont: 2011-2018. | Stelling, John; Read, Jennifer S; Fritch, William; O'Brien, Thomas F; Peters, Rob; Clark, Adam; Bokhari, Marissa; Lion, Mattia; Katwa, Parisha; Kelso, Patsy | Expert review of anti-infective therapy. | 2020 Oct; | 32552054 | |
| Wearable microPosters. | Lee, James; Sternberg, Paul | microPublication biology. | 2019 Nov 26; | 32550402 | |
| Directed remodeling of the mouse gut microbiome inhibits the development of atherosclerosis. | Chen, Poshen B; Black, Audrey S; Sobel, Adam L; Zhao, Yannan; Mukherjee, Purba; Molparia, Bhuvan; Moore, Nina E; Aleman Muench, German R; Wu, Jiejun; Chen, Weixuan; Pinto, Antonio F M; Maryanoff, Bruce E; Saghatelian, Alan; Soroosh, Pejman; Torkamani, Ali; Leman, Luke J; Ghadiri, M Reza | Nature biotechnology. | 2020 Jun 15; | 32541956 | |
| Subcortical Brain Volume, Regional Cortical Thickness, and Cortical Surface Area Across Disorders: Findings From the ENIGMA ADHD, ASD, and OCD Working Groups. | Boedhoe, Premika S W (see original citation for additional authors) | The American journal of psychiatry | 2020 09 01 | 32539527 | |
| SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins. | Chen, Fan; Kele?, Sündüz | Genome biology. | 2020 06 12; | 32532357 | |
| Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold. | Ferguson, Fleur M; Liu, Yan; Harshbarger, Wayne; Huang, Ling; Wang, Jinhua; Deng, Xianming; Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander; Muthuswamy, Senthil; Westover, Kenneth D; Gray, Nathanael S | Journal of medicinal chemistry | 2020 07 23 | 32530623 | |
| Automated outbreak detection of hospital-associated pathogens: Value to infection prevention programs. | Baker, Meghan A; Yokoe, Deborah S; Stelling, John; Kleinman, Ken; Kaganov, Rebecca E; Letourneau, Alyssa R; Varma, Neha; O'Brien, Thomas; Kulldorff, Martin; Babalola, Damilola; Barrett, Craig; Drees, Marci; Coady, Micaela H; Isaacs, Amanda; Platt, Richard; Huang, Susan S; CDC Prevention Epicenters Program | Infection control and hospital epidemiology | 2020 09 | 32519624 | |
| Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities. | Armstrong, Nicola J; Mather, Karen A; Sargurupremraj, Muralidharan; Knol, Maria J; Malik, Rainer; Satizabal, Claudia L; Yanek, Lisa R; Wen, Wei; Gudnason, Vilmundur G; Dueker, Nicole D; Elliott, Lloyd T; Hofer, Edith; Bis, Joshua; Jahanshad, Neda; Li, Shuo; Logue, Mark A; Luciano, Michelle; Scholz, Markus; Smith, Albert V; Trompet, Stella; Vojinovic, Dina; Xia, Rui; Alfaro-Almagro, Fidel; Ames, David; Amin, Najaf; Amouyel, Philippe; Beiser, Alexa S; Brodaty, Henry; Deary, Ian J; Fennema-Notestine, Christine; Gampawar, Piyush G; Gottesman, Rebecca; Griffanti, Ludovica; Jack Jr, Clifford R; Jenkinson, Mark; Jiang, Jiyang; Kral, Brian G; Kwok, John B; Lampe, Leonie; C M Liewald, David; Maillard, Pauline; Marchini, Jonathan; Bastin, Mark E; Mazoyer, Bernard; Pirpamer, Lukas; Rafael Romero, José; Roshchupkin, Gennady V; Schofield, Peter R; Schroeter, Matthias L; Stott, David J; Thalamuthu, Anbupalam; Trollor, Julian; Tzourio, Christophe; van der Grond, Jeroen; Vernooij, Meike W; Witte, Veronica A; Wright, Margaret J; Yang, Qiong; Morris, Zoe; Siggurdsson, Siggi; Psaty, Bruce; Villringer, Arno; Schmidt, Helena; Haberg, Asta K; van Duijn, Cornelia M; Jukema, J Wouter; Dichgans, Martin; Sacco, Ralph L; Wright, Clinton B; Kremen, William S; Becker, Lewis C; Thompson, Paul M; Mosley, Thomas H; Wardlaw, Joanna M; Ikram, M Arfan; Adams, Hieab H H; Seshadri, Sudha; Sachdev, Perminder S; Smith, Stephen M; Launer, Lenore; Longstreth, William; DeCarli, Charles; Schmidt, Reinhold; Fornage, Myriam; Debette, Stephanie; Nyquist, Paul A | Stroke. | 2020 Jul; | 32517579 | |
| A geometric framework for statistical analysis of trajectories with distinct temporal spans. | Chakraborty, Rudrasis; Singh, Vikas; Adluru, Nagesh; Vemuri, Baba C | Proceedings. IEEE International Conference on Computer Vision. | 2017 Oct; | 32514257 | |
| Reversal of Infected Host Gene Expression Identifies Repurposed Drug Candidates for COVID-19. | Xing, Jing; Shankar, Rama; Drelich, Aleksandra; Paithankar, Shreya; Chekalin, Eugene; Dexheimer, Thomas; Rajasekaran, Surender; Tseng, Chien-Te Kent; Chen, Bin | bioRxiv : the preprint server for biology. | 2020 Apr 09; | 32511305 | |
| Pre-operative gastrocnemius lengths in gait predict outcomes following gastrocnemius lengthening surgery in children with cerebral palsy. | Rajagopal, Apoorva; Kidzi?ski, ?ukasz; McGlaughlin, Alec S; Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael H | PloS one. | 2020; | 32502157 | |
| Distributed Regression Analysis Application in Large Distributed Data Networks: Analysis of Precision and Operational Performance. | Her, Qoua; Malenfant, Jessica; Zhang, Zilu; Vilk, Yury; Young, Jessica; Tabano, David; Hamilton, Jack; Johnson, Ron; Raebel, Marsha; Boudreau, Denise; Toh, Sengwee | JMIR medical informatics. | 2020 Jun 04; | 32496200 | |
| Using Ethereum blockchain to store and query pharmacogenomics data via smart contracts. | Gürsoy, Gamze; Brannon, Charlotte M; Gerstein, Mark | BMC medical genomics. | 2020 06 01; | 32487214 | |
| The effects of motor modularity on performance, learning and generalizability in upper-extremity reaching: a computational analysis. | Al Borno, Mazen; Hicks, Jennifer L; Delp, Scott L | Journal of the Royal Society, Interface. | 2020 06; | 32486950 | |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks. | Leman, Julia Koehler; Weitzner, Brian D; Lewis, Steven M; Adolf-Bryfogle, Jared; Alam, Nawsad; Alford, Rebecca F; Aprahamian, Melanie; Baker, David; Barlow, Kyle A; Barth, Patrick; Basanta, Benjamin; Bender, Brian J; Blacklock, Kristin; Bonet, Jaume; Boyken, Scott E; Bradley, Phil; Bystroff, Chris; Conway, Patrick; Cooper, Seth; Correia, Bruno E; Coventry, Brian; Das, Rhiju; De Jong, René M; DiMaio, Frank; Dsilva, Lorna; Dunbrack, Roland; Ford, Alexander S; Frenz, Brandon; Fu, Darwin Y; Geniesse, Caleb; Goldschmidt, Lukasz; Gowthaman, Ragul; Gray, Jeffrey J; Gront, Dominik; Guffy, Sharon; Horowitz, Scott; Huang, Po-Ssu; Huber, Thomas; Jacobs, Tim M; Jeliazkov, Jeliazko R; Johnson, David K; Kappel, Kalli; Karanicolas, John; Khakzad, Hamed; Khar, Karen R; Khare, Sagar D; Khatib, Firas; Khramushin, Alisa; King, Indigo C; Kleffner, Robert; Koepnick, Brian; Kortemme, Tanja; Kuenze, Georg; Kuhlman, Brian; Kuroda, Daisuke; Labonte, Jason W; Lai, Jason K; Lapidoth, Gideon; Leaver-Fay, Andrew; Lindert, Steffen; Linsky, Thomas; London, Nir; Lubin, Joseph H; Lyskov, Sergey; Maguire, Jack; Malmström, Lars; Marcos, Enrique; Marcu, Orly; Marze, Nicholas A; Meiler, Jens; Moretti, Rocco; Mulligan, Vikram Khipple; Nerli, Santrupti; Norn, Christoffer; Ó'Conchúir, Shane; Ollikainen, Noah; Ovchinnikov, Sergey; Pacella, Michael S; Pan, Xingjie; Park, Hahnbeom; Pavlovicz, Ryan E; Pethe, Manasi; Pierce, Brian G; Pilla, Kala Bharath; Raveh, Barak; Renfrew, P Douglas; Burman, Shourya S Roy; Rubenstein, Aliza; Sauer, Marion F; Scheck, Andreas; Schief, William; Schueler-Furman, Ora; Sedan, Yuval; Sevy, Alexander M; Sgourakis, Nikolaos G; Shi, Lei; Siegel, Justin B; Silva, Daniel-Adriano; Smith, Shannon; Song, Yifan; Stein, Amelie; Szegedy, Maria; Teets, Frank D; Thyme, Summer B; Wang, Ray Yu-Ruei; Watkins, Andrew; Zimmerman, Lior; Bonneau, Richard | Nature methods. | 2020 07; | 32483333 | |
| Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines. | Argimón, Silvia; Masim, Melissa A L; Gayeta, June M; Lagrada, Marietta L; Macaranas, Polle K V; Cohen, Victoria; Limas, Marilyn T; Espiritu, Holly O; Palarca, Janziel C; Chilam, Jeremiah; Jamoralin Jr, Manuel C; Villamin, Alfred S; Borlasa, Janice B; Olorosa, Agnettah M; Hernandez, Lara F T; Boehme, Karis D; Jeffrey, Benjamin; Abudahab, Khalil; Hufano, Charmian M; Sia, Sonia B; Stelling, John; Holden, Matthew T G; Aanensen, David M; Carlos, Celia C | Nature communications. | 2020 Jun 01; | 32483195 | |
| Cross-sectional and longitudinal associations of family income-to-needs ratio with cortical and subcortical brain volume in adolescent boys and girls. | King, Lucy S; Dennis, Emily L; Humphreys, Kathryn L; Thompson, Paul M; Gotlib, Ian H | Developmental cognitive neuroscience. | 2020 May 18; | 32479375 | |
| Developing a FHIR-based Framework for Phenome Wide Association Studies: A Case Study with A Pan-Cancer Cohort. | Zong, Nansu; Sharma, Deepak K; Yu, Yue; Egan, Jan B; Davila, Jaime I; Wang, Chen; Jiang, Guoqian | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2020; | 32477698 | |
| ENIGMA brain injury: Framework, challenges, and opportunities. | Dennis, Emily L; Baron, David; Bartnik-Olson, Brenda; Caeyenberghs, Karen; Esopenko, Carrie; Hillary, Frank G; Kenney, Kimbra; Koerte, Inga K; Lin, Alexander P; Mayer, Andrew R; Mondello, Stefania; Olsen, Alexander; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A | Human brain mapping | 2022 Jan | 32476212 | |
| ENIGMA MDD: seven years of global neuroimaging studies of major depression through worldwide data sharing. | Schmaal, Lianne; Pozzi, Elena; C Ho, Tiffany; van Velzen, Laura S; Veer, Ilya M; Opel, Nils; Van Someren, Eus J W; Han, Laura K M; Aftanas, Lybomir; Aleman, André; Baune, Bernhard T; Berger, Klaus; Blanken, Tessa F; Capitão, Liliana; Couvy-Duchesne, Baptiste; R Cullen, Kathryn; Dannlowski, Udo; Davey, Christopher; Erwin-Grabner, Tracy; Evans, Jennifer; Frodl, Thomas; Fu, Cynthia H Y; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans J; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gutman, Boris A; Hall, Geoffrey B; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Hilland, Eva; Irungu, Benson; Jonassen, Rune; Kelly, Sinead; Kircher, Tilo; Klimes-Dougan, Bonnie; Krug, Axel; Landrø, Nils Inge; Lagopoulos, Jim; Leerssen, Jeanne; Li, Meng; Linden, David E J; MacMaster, Frank P; M McIntosh, Andrew; Mehler, David M A; Nenadi?, Igor; Penninx, Brenda W J H; Portella, Maria J; Reneman, Liesbeth; Rentería, Miguel E; Sacchet, Matthew D; G Sämann, Philipp; Schrantee, Anouk; Sim, Kang; Soares, Jair C; Stein, Dan J; Tozzi, Leonardo; van Der Wee, Nic J A; van Tol, Marie-José; Vermeiren, Robert; Vives-Gilabert, Yolanda; Walter, Henrik; Walter, Martin; Whalley, Heather C; Wittfeld, Katharina; Whittle, Sarah; Wright, Margaret J; Yang, Tony T; Zarate Jr, Carlos; Thomopoulos, Sophia I; Jahanshad, Neda; Thompson, Paul M; Veltman, Dick J | Translational psychiatry. | 2020 May 29; | 32472038 | |
| Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA. | Radua, Joaquim; Vieta, Eduard; Shinohara, Russell; Kochunov, Peter; Quidé, Yann; Green, Melissa J; Weickert, Cynthia S; Weickert, Thomas; Bruggemann, Jason; Kircher, Tilo; Nenadi?, Igor; Cairns, Murray J; Seal, Marc; Schall, Ulrich; Henskens, Frans; Fullerton, Janice M; Mowry, Bryan; Pantelis, Christos; Lenroot, Rhoshel; Cropley, Vanessa; Loughland, Carmel; Scott, Rodney; Wolf, Daniel; Satterthwaite, Theodore D; Tan, Yunlong; Sim, Kang; Piras, Fabrizio; Spalletta, Gianfranco; Banaj, Nerisa; Pomarol-Clotet, Edith; Solanes, Aleix; Albajes-Eizagirre, Anton; Canales-Rodríguez, Erick J; Sarro, Salvador; Di Giorgio, Annabella; Bertolino, Alessandro; Stäblein, Michael; Oertel, Viola; Knöchel, Christian; Borgwardt, Stefan; du Plessis, Stefan; Yun, Je-Yeon; Kwon, Jun Soo; Dannlowski, Udo; Hahn, Tim; Grotegerd, Dominik; Alloza, Clara; Arango, Celso; Janssen, Joost; Díaz-Caneja, Covadonga; Jiang, Wenhao; Calhoun, Vince; Ehrlich, Stefan; Yang, Kun; Cascella, Nicola G; Takayanagi, Yoichiro; Sawa, Akira; Tomyshev, Alexander; Lebedeva, Irina; Kaleda, Vasily; Kirschner, Matthias; Hoschl, Cyril; Tomecek, David; Skoch, Antonin; van Amelsvoort, Therese; Bakker, Geor; James, Anthony; Preda, Adrian; Weideman, Andrea; Stein, Dan J; Howells, Fleur; Uhlmann, Anne; Temmingh, Henk; López-Jaramillo, Carlos; Díaz-Zuluaga, Ana; Fortea, Lydia; Martinez-Heras, Eloy; Solana, Elisabeth; Llufriu, Sara; Jahanshad, Neda; Thompson, Paul; Turner, Jessica; van Erp, Theo; ENIGMA Consortium collaborators | NeuroImage. | 2020 Sep; | 32470572 | |
| The ENIGMA-Epilepsy working group: Mapping disease from large data sets. | Sisodiya, Sanjay M; Whelan, Christopher D; Hatton, Sean N; Huynh, Khoa; Altmann, Andre; Ryten, Mina; Vezzani, Annamaria; Caligiuri, Maria Eugenia; Labate, Angelo; Gambardella, Antonio; Ives-Deliperi, Victoria; Meletti, Stefano; Munsell, Brent C; Bonilha, Leonardo; Tondelli, Manuela; Rebsamen, Michael; Rummel, Christian; Vaudano, Anna Elisabetta; Wiest, Roland; Balachandra, Akshara R; Bargalló, Núria; Bartolini, Emanuele; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris; Caldairou, Benoit; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Desmond, Patricia M; Domin, Martin; Duncan, John S; Focke, Niels K; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Jahanshad, Neda; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kowalczyk, Magdalena A; Kreilkamp, Barbara A K; Kwan, Patrick; Lariviere, Sara; Lenge, Matteo; Lopez, Seymour M; Martin, Pascal; Mascalchi, Mario; Moreira, José C V; Morita-Sherman, Marcia E; Pardoe, Heath R; Pariente, Jose C; Raviteja, Kotikalapudi; Rocha, Cristiane S; Rodríguez-Cruces, Raúl; Seeck, Margitta; Semmelroch, Mira K H G; Sinclair, Benjamin; Soltanian-Zadeh, Hamid; Stein, Dan J; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Thomopoulos, Sophia I; Velakoulis, Dennis; Vivash, Lucy; Weber, Bernd; Yasuda, Clarissa Lin; Zhang, Junsong; Thompson, Paul M; McDonald, Carrie R; ENIGMA Consortium Epilepsy Working Group | Human brain mapping. | 2020 May 29; | 32468614 | |
| Brain structural abnormalities in obesity: relation to age, genetic risk, and common psychiatric disorders : Evidence through univariate and multivariate mega-analysis including 6420 participants from the ENIGMA MDD working group. | Opel, Nils; Thalamuthu, Anbupalam; Milaneschi, Yuri; Grotegerd, Dominik; Flint, Claas; Leenings, Ramona; Goltermann, Janik; Richter, Maike; Hahn, Tim; Woditsch, Georg; Berger, Klaus; Hermesdorf, Marco; McIntosh, Andrew; Whalley, Heather C; Harris, Mathew A; MacMaster, Frank P; Walter, Henrik; Veer, Ilya M; Frodl, Thomas; Carballedo, Angela; Krug, Axel; Nenadic, Igor; Kircher, Tilo; Aleman, Andre; Groenewold, Nynke A; Stein, Dan J; Soares, Jair C; Zunta-Soares, Giovana B; Mwangi, Benson; Wu, Mon-Ju; Walter, Martin; Li, Meng; Harrison, Ben J; Davey, Christopher G; Cullen, Kathryn R; Klimes-Dougan, Bonnie; Mueller, Bryon A; Sämann, Philipp G; Penninx, Brenda; Nawijn, Laura; Veltman, Dick J; Aftanas, Lyubomir; Brak, Ivan V; Filimonova, Elena A; Osipov, Evgeniy A; Reneman, Liesbeth; Schrantee, Anouk; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Hosten, Norbert; Völzke, Henry; Sim, Kang; Gotlib, Ian H; Sacchet, Matthew D; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian; Pozzi, Elena; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne; Baune, Bernhard T; Dannlowski, Udo | Molecular psychiatry | 2021 Sep | 32467648 | |
| The effect of LRRK2 loss-of-function variants in humans. | Whiffin, Nicola; Armean, Irina M; Kleinman, Aaron; Marshall, Jamie L; Minikel, Eric V; Goodrich, Julia K; Quaife, Nicholas M; Cole, Joanne B; Wang, Qingbo; Karczewski, Konrad J; Cummings, Beryl B; Francioli, Laurent; Laricchia, Kristen; Guan, Anna; Alipanahi, Babak; Morrison, Peter; Baptista, Marco A S; Merchant, Kalpana M; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Ware, James S; Havulinna, Aki S; Iliadou, Bozenna; Lee, Jung-Jin; Nadkarni, Girish N; Whiteman, Cole; 23andMe Research Team; Daly, Mark; Esko, Tõnu; Hultman, Christina; Loos, Ruth J F; Milani, Lili; Palotie, Aarno; Pato, Carlos; Pato, Michele; Saleheen, Danish; Sullivan, Patrick F; Alföldi, Jessica; Cannon, Paul; MacArthur, Daniel G | Nature medicine. | 2020 Jun; | 32461697 | |
| Transcript expression-aware annotation improves rare variant interpretation. | Cummings, Beryl B; Karczewski, Konrad J; Kosmicki, Jack A; Seaby, Eleanor G; Watts, Nicholas A; Singer-Berk, Moriel; Mudge, Jonathan M; Karjalainen, Juha; Satterstrom, F Kyle; O'Donnell-Luria, Anne H; Poterba, Timothy; Seed, Cotton; Solomonson, Matthew; Alföldi, Jessica; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Daly, Mark J; MacArthur, Daniel G | Nature. | 2020 May; | 32461655 | |
| The mutational constraint spectrum quantified from variation in 141,456 humans. | Karczewski, Konrad J; Francioli, Laurent C; Tiao, Grace; Cummings, Beryl B; Alföldi, Jessica; Wang, Qingbo; Collins, Ryan L; Laricchia, Kristen M; Ganna, Andrea; Birnbaum, Daniel P; Gauthier, Laura D; Brand, Harrison; Solomonson, Matthew; Watts, Nicholas A; Rhodes, Daniel; Singer-Berk, Moriel; England, Eleina M; Seaby, Eleanor G; Kosmicki, Jack A; Walters, Raymond K; Tashman, Katherine; Farjoun, Yossi; Banks, Eric; Poterba, Timothy; Wang, Arcturus; Seed, Cotton; Whiffin, Nicola; Chong, Jessica X; Samocha, Kaitlin E; Pierce-Hoffman, Emma; Zappala, Zachary; O'Donnell-Luria, Anne H; Minikel, Eric Vallabh; Weisburd, Ben; Lek, Monkol; Ware, James S; Vittal, Christopher; Armean, Irina M; Bergelson, Louis; Cibulskis, Kristian; Connolly, Kristen M; Covarrubias, Miguel; Donnelly, Stacey; Ferriera, Steven; Gabriel, Stacey; Gentry, Jeff; Gupta, Namrata; Jeandet, Thibault; Kaplan, Diane; Llanwarne, Christopher; Munshi, Ruchi; Novod, Sam; Petrillo, Nikelle; Roazen, David; Ruano-Rubio, Valentin; Saltzman, Andrea; Schleicher, Molly; Soto, Jose; Tibbetts, Kathleen; Tolonen, Charlotte; Wade, Gordon; Talkowski, Michael E; Genome Aggregation Database Consortium; Neale, Benjamin M; Daly, Mark J; MacArthur, Daniel G | Nature. | 2020 05; | 32461654 | |
| Evaluating drug targets through human loss-of-function genetic variation. | Minikel, Eric Vallabh; Karczewski, Konrad J; Martin, Hilary C; Cummings, Beryl B; Whiffin, Nicola; Rhodes, Daniel; Alföldi, Jessica; Trembath, Richard C; van Heel, David A; Daly, Mark J; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Schreiber, Stuart L; MacArthur, Daniel G | Nature. | 2020 05; | 32461653 | |
| Characterising the loss-of-function impact of 5' untranslated region variants in 15,708 individuals. | Whiffin, Nicola; Karczewski, Konrad J; Zhang, Xiaolei; Chothani, Sonia; Smith, Miriam J; Evans, D Gareth; Roberts, Angharad M; Quaife, Nicholas M; Schafer, Sebastian; Rackham, Owen; Alföldi, Jessica; O'Donnell-Luria, Anne H; Francioli, Laurent C; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Cook, Stuart A; Barton, Paul J R; MacArthur, Daniel G; Ware, James S | Nature communications. | 2020 05 27; | 32461616 | |
| Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes. | Wang, Qingbo; Pierce-Hoffman, Emma; Cummings, Beryl B; Alföldi, Jessica; Francioli, Laurent C; Gauthier, Laura D; Hill, Andrew J; O'Donnell-Luria, Anne H; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Karczewski, Konrad J; MacArthur, Daniel G | Nature communications. | 2020 05 27; | 32461613 | |
| An Assessment of Environmental Health Measures in the Deepwater Horizon Research Consortia. | Pan, Huaqin; Edwards, Stephen W; Ives, Cataia; Covert, Hannah; Harville, Emily W; Lichtveld, Maureen Y; Wickliffe, Jeffrey K; Hamilton, Carol M | Current opinion in toxicology. | 2019 Aug; | 32457927 | |
| Pangenome Graphs. | Eizenga, Jordan M; Novak, Adam M; Sibbesen, Jonas A; Heumos, Simon; Ghaffaari, Ali; Hickey, Glenn; Chang, Xian; Seaman, Josiah D; Rounthwaite, Robin; Ebler, Jana; Rautiainen, Mikko; Garg, Shilpa; Paten, Benedict; Marschall, Tobias; Sirén, Jouni; Garrison, Erik | Annual review of genomics and human genetics | 2020 08 31 | 32453966 | |
| Linked patterns of biological and environmental covariation with brain structure in adolescence: a population-based longitudinal study. | Modabbernia, Amirhossein; Reichenberg, Abraham; Ing, Alex; Moser, Dominik A; Doucet, Gaelle E; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth J; Becker, Andreas; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Garavan, Hugh; Gowland, Penny; Grigis, Antoine; Grimmer, Yvonne; Heinz, Andreas; Insensee, Corinna; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Millenet, Sabina; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Penttilä, Jani; Poustka, Luise; Smolka, Michael N; Stringaris, Argyris; van Noort, Betteke M; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Frangou, Sophia; IMAGEN Consortium | Molecular psychiatry | 2020 May 22 | 32444868 | |
| Cognitive and brain development is independently influenced by socioeconomic status and polygenic scores for educational attainment. | Judd, Nicholas; Sauce, Bruno; Wiedenhoeft, John; Tromp, Jeshua; Chaarani, Bader; Schliep, Alexander; van Noort, Betteke; Penttilä, Jani; Grimmer, Yvonne; Insensee, Corinna; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Klingberg, Torkel | Proceedings of the National Academy of Sciences of the United States of America. | 2020 06 02; | 32430323 | |
| Machine learning on drug-specific data to predict small molecule teratogenicity. | Challa, Anup P; Beam, Andrew L; Shen, Min; Peryea, Tyler; Lavieri, Robert R; Lippmann, Ethan S; Aronoff, David M | Reproductive toxicology (Elmsford, N.Y.). | 2020 Aug; | 32428651 | |
| Brain aging in major depressive disorder: results from the ENIGMA major depressive disorder working group. | Han, Laura K M; Dinga, Richard; Hahn, Tim; Ching, Christopher R K; Eyler, Lisa T; Aftanas, Lyubomir; Aghajani, Moji; Aleman, André; Baune, Bernhard T; Berger, Klaus; Brak, Ivan; Filho, Geraldo Busatto; Carballedo, Angela; Connolly, Colm G; Couvy-Duchesne, Baptiste; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Duran, Fabio L S; Enneking, Verena; Filimonova, Elena; Frenzel, Stefan; Frodl, Thomas; Fu, Cynthia H Y; Godlewska, Beata R; Gotlib, Ian H; Grabe, Hans J; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Hall, Geoffrey B; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Ho, Tiffany C; Hosten, Norbert; Jansen, Andreas; Kähler, Claas; Kircher, Tilo; Klimes-Dougan, Bonnie; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leenings, Ramona; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew; McLellan, Quinn; McMahon, Katie L; Medland, Sarah E; Mueller, Bryon A; Mwangi, Benson; Osipov, Evgeny; Portella, Maria J; Pozzi, Elena; Reneman, Liesbeth; Repple, Jonathan; Rosa, Pedro G P; Sacchet, Matthew D; Sämann, Philipp G; Schnell, Knut; Schrantee, Anouk; Simulionyte, Egle; Soares, Jair C; Sommer, Jens; Stein, Dan J; Steinsträter, Olaf; Strike, Lachlan T; Thomopoulos, Sophia I; van Tol, Marie-José; Veer, Ilya M; Vermeiren, Robert R J M; Walter, Henrik; van der Wee, Nic J A; van der Werff, Steven J A; Whalley, Heather; Winter, Nils R; Wittfeld, Katharina; Wright, Margaret J; Wu, Mon-Ju; Völzke, Henry; Yang, Tony T; Zannias, Vasileios; de Zubicaray, Greig I; Zunta-Soares, Giovana B; Abé, Christoph; Alda, Martin; Andreassen, Ole A; Bøen, Erlend; Bonnin, Caterina M; Canales-Rodriguez, Erick J; Cannon, Dara; Caseras, Xavier; Chaim-Avancini, Tiffany M; Elvsåshagen, Torbjørn; Favre, Pauline; Foley, Sonya F; Fullerton, Janice M; Goikolea, Jose M; Haarman, Bartholomeus C M; Hajek, Tomas; Henry, Chantal; Houenou, Josselin; Howells, Fleur M; Ingvar, Martin; Kuplicki, Rayus; Lafer, Beny; Landén, Mikael; Machado-Vieira, Rodrigo; Malt, Ulrik F; McDonald, Colm; Mitchell, Philip B; Nabulsi, Leila; Otaduy, Maria Concepcion Garcia; Overs, Bronwyn J; Polosan, Mircea; Pomarol-Clotet, Edith; Radua, Joaquim; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Savitz, Jonathan; Schene, Aart H; Schofield, Peter R; Serpa, Mauricio H; Sim, Kang; Soeiro-de-Souza, Marcio Gerhardt; Sutherland, Ashley N; Temmingh, Henk S; Timmons, Garrett M; Uhlmann, Anne; Vieta, Eduard; Wolf, Daniel H; Zanetti, Marcus V; Jahanshad, Neda; Thompson, Paul M; Veltman, Dick J; Penninx, Brenda W J H; Marquand, Andre F; Cole, James H; Schmaal, Lianne | Molecular psychiatry | 2021 Sep | 32424236 | |
| Consortium neuroscience of attention deficit/hyperactivity disorder and autism spectrum disorder: The ENIGMA adventure. | Hoogman, Martine; van Rooij, Daan; Klein, Marieke; Boedhoe, Premika; Ilioska, Iva; Li, Ting; Patel, Yash; Postema, Merel C; Zhang-James, Yanli; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Banaschewski, Tobias; Bau, Claiton H D; Behrmann, Marlene; Bellgrove, Mark A; Brandeis, Daniel; Brem, Silvia; Busatto, Geraldo F; Calderoni, Sara; Calvo, Rosa; Castellanos, Francisco X; Coghill, David; Conzelmann, Annette; Daly, Eileen; Deruelle, Christine; Dinstein, Ilan; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Epstein, Jeffery N; Fair, Damien A; Fitzgerald, Jacqueline; Freitag, Christine M; Frodl, Thomas; Gallagher, Louise; Grevet, Eugenio H; Haavik, Jan; Hoekstra, Pieter J; Janssen, Joost; Karkashadze, Georgii; King, Joseph A; Konrad, Kerstin; Kuntsi, Jonna; Lazaro, Luisa; Lerch, Jason P; Lesch, Klaus-Peter; Louza, Mario R; Luna, Beatriz; Mattos, Paulo; McGrath, Jane; Muratori, Filippo; Murphy, Clodagh; Nigg, Joel T; Oberwelland-Weiss, Eileen; O'Gorman Tuura, Ruth L; O'Hearn, Kirsten; Oosterlaan, Jaap; Parellada, Mara; Pauli, Paul; Plessen, Kerstin J; Ramos-Quiroga, J Antoni; Reif, Andreas; Reneman, Liesbeth; Retico, Alessandra; Rosa, Pedro G P; Rubia, Katya; Shaw, Philip; Silk, Tim J; Tamm, Leanne; Vilarroya, Oscar; Walitza, Susanne; Jahanshad, Neda; Faraone, Stephen V; Francks, Clyde; van den Heuvel, Odile A; Paus, Tomas; Thompson, Paul M; Buitelaar, Jan K; Franke, Barbara | Human brain mapping. | 2020 May 18; | 32420680 | |
| Mapping brain asymmetry in health and disease through the ENIGMA consortium. | Kong, Xiang-Zhen; Postema, Merel C; Guadalupe, Tulio; de Kovel, Carolien; Boedhoe, Premika S W; Hoogman, Martine; Mathias, Samuel R; van Rooij, Daan; Schijven, Dick; Glahn, David C; Medland, Sarah E; Jahanshad, Neda; Thomopoulos, Sophia I; Turner, Jessica A; Buitelaar, Jan; van Erp, Theo G M; Franke, Barbara; Fisher, Simon E; van den Heuvel, Odile A; Schmaal, Lianne; Thompson, Paul M; Francks, Clyde | Human brain mapping | 2022 Jan | 32420672 | |
| A Natural Language Interface for Dissemination of Reproducible Biomedical Data Science. | John, Rogers Jeffrey Leo; Patel, Jignesh M; Alexander, Andrew L; Singh, Vikas; Adluru, Nagesh | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2018 Sep; | 32412016 | |
| Conditional Recurrent Flow: Conditional Generation of Longitudinal Samples with Applications to Neuroimaging. | Hwang, Seong Jae; Tao, Zirui; Kim, Won Hwa; Singh, Vikas | Proceedings. IEEE International Conference on Computer Vision. | 2019 Oct-Nov; | 32405276 | |
| Dilated Convolutional Neural Networks for Sequential Manifold-valued Data. | Zhen, Xingjian; Chakraborty, Rudrasis; Vogt, Nicholas; Bendlin, Barbara B; Singh, Vikas | Proceedings. IEEE International Conference on Computer Vision. | 2019 Oct-Nov; | 32405275 | |
| Sampling-free Uncertainty Estimation in Gated Recurrent Units with Applications to Normative Modeling in Neuroimaging. | Hwang, Seong Jae; Mehta, Ronak R; Kim, Hyunwoo J; Johnson, Sterling C; Singh, Vikas | Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. | 2019 Jul; | 32405271 | |
| Machine Learning Offers Exciting Potential for Predicting Postprocedural Outcomes: A Framework for Developing Random Forest Models in IR. | Sinha, Ishan; Aluthge, Dilum P; Chen, Elizabeth S; Sarkar, Indra Neil; Ahn, Sun Ho | Journal of vascular and interventional radiology : JVIR | 2020 06 | 32376173 | |
| Goal-setting And Achievement In Activity Tracking Apps: A Case Study Of MyFitnessPal. | Gordon, Mitchell L; Althoff, Tim; Leskovec, Jure | Proceedings of the ... International World-Wide Web Conference. International WWW Conference. | 2019 May; | 32368761 | |
| EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning. | Kuo, Tsung-Ting; Gabriel, Rodney A; Cidambi, Krishna R; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 2020 May 01; | 32364235 | |
| Engaging citizen scientists to build healthy park environments in Colombia. | Rubio, María Alejandra; Triana, Camilo; King, Abby C; Rosas, Lisa G; Banchoff, Ann W; Rubiano, Oscar; Chrisinger, Benjamin W; Sarmiento, Olga L | Health promotion international | 2021 Mar 12 | 32361761 | |
| QSAR without borders. | Muratov, Eugene N; Bajorath, Jürgen; Sheridan, Robert P; Tetko, Igor V; Filimonov, Dmitry; Poroikov, Vladimir; Oprea, Tudor I; Baskin, Igor I; Varnek, Alexandre; Roitberg, Adrian; Isayev, Olexandr; Curtarolo, Stefano; Fourches, Denis; Cohen, Yoram; Aspuru-Guzik, Alan; Winkler, David A; Agrafiotis, Dimitris; Cherkasov, Artem; Tropsha, Alexander | Chemical Society reviews | 2020 06 07 | 32356548 | |
| Riemannian Variance Filtering: An Independent Filtering Scheme for Statistical Tests on Manifold-valued Data. | Zheng, Ligang; Kim, Hyunwoo J; Adluru, Nagesh; Newton, Michael A; Singh, Vikas | Conference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops. | 2017 Jul; | 32355573 | |
| The turning and barrier course reveals gait parameters for detecting freezing of gait and measuring the efficacy of deep brain stimulation. | O'Day, Johanna; Syrkin-Nikolau, Judy; Anidi, Chioma; Kidzinski, Lukasz; Delp, Scott; Bronte-Stewart, Helen | PloS one. | 2020; | 32348346 | |
| From a deep learning model back to the brain-Identifying regional predictors and their relation to aging. | Levakov, Gidon; Rosenthal, Gideon; Shelef, Ilan; Raviv, Tammy Riklin; Avidan, Galia | Human brain mapping. | 2020 Aug 15; | 32320123 | |
| Efficient Relative Attribute Learning using Graph Neural Networks. | Meng, Zihang; Adluru, Nagesh; Kim, Hyunwoo J; Fung, Glenn; Singh, Vikas | Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. | 2018 Sep; | 32318687 | |
| Neurobehavioural characterisation and stratification of reinforcement-related behaviour. | Jia, Tianye; Ing, Alex; Quinlan, Erin Burke; Tay, Nicole; Luo, Qiang; Francesca, Biondo; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Feng, Jianfeng; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium | Nature human behaviour. | 2020 05; | 32313235 | |
| The ENIGMA Stroke Recovery Working Group: Big data neuroimaging to study brain-behavior relationships after stroke. | Liew, Sook-Lei; Zavaliangos-Petropulu, Artemis; Jahanshad, Neda; Lang, Catherine E; Hayward, Kathryn S; Lohse, Keith R; Juliano, Julia M; Assogna, Francesca; Baugh, Lee A; Bhattacharya, Anup K; Bigjahan, Bavrina; Borich, Michael R; Boyd, Lara A; Brodtmann, Amy; Buetefisch, Cathrin M; Byblow, Winston D; Cassidy, Jessica M; Conforto, Adriana B; Craddock, R Cameron; Dimyan, Michael A; Dula, Adrienne N; Ermer, Elsa; Etherton, Mark R; Fercho, Kelene A; Gregory, Chris M; Hadidchi, Shahram; Holguin, Jess A; Hwang, Darryl H; Jung, Simon; Kautz, Steven A; Khlif, Mohamed Salah; Khoshab, Nima; Kim, Bokkyu; Kim, Hosung; Kuceyeski, Amy; Lotze, Martin; MacIntosh, Bradley J; Margetis, John L; Mohamed, Feroze B; Piras, Fabrizio; Ramos-Murguialday, Ander; Richard, Geneviève; Roberts, Pamela; Robertson, Andrew D; Rondina, Jane M; Rost, Natalia S; Sanossian, Nerses; Schweighofer, Nicolas; Seo, Na Jin; Shiroishi, Mark S; Soekadar, Surjo R; Spalletta, Gianfranco; Stinear, Cathy M; Suri, Anisha; Tang, Wai Kwong W; Thielman, Gregory T; Vecchio, Daniela; Villringer, Arno; Ward, Nick S; Werden, Emilio; Westlye, Lars T; Winstein, Carolee; Wittenberg, George F; Wong, Kristin A; Yu, Chunshui; Cramer, Steven C; Thompson, Paul M | Human brain mapping | 2022 Jan | 32310331 | |
| Comparison of Smart Contract Blockchains for Healthcare Applications. | Yu, Hongru; Sun, Haiyang; Wu, Danyi; Kuo, Tsung-Ting | AMIA ... Annual Symposium proceedings. AMIA Symposium | 2019 | 32308924 | |
| Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. | Adekkanattu, Prakash; Jiang, Guoqian; Luo, Yuan; Kingsbury, Paul R; Xu, Zhenxing; Rasmussen, Luke V; Pacheco, Jennifer A; Kiefer, Richard C; Stone, Daniel J; Brandt, Pascal S; Yao, Liang; Zhong, Yizhen; Deng, Yu; Wang, Fei; Ancker, Jessica S; Campion, Thomas R; Pathak, Jyotishman | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2019; | 32308812 | |
| ENIGMA-DTI: Translating reproducible white matter deficits into personalized vulnerability metrics in cross-diagnostic psychiatric research. | Kochunov, Peter; Hong, L Elliot; Dennis, Emily L; Morey, Rajendra A; Tate, David F; Wilde, Elisabeth A; Logue, Mark; Kelly, Sinead; Donohoe, Gary; Favre, Pauline; Houenou, Josselin; Ching, Christopher R K; Holleran, Laurena; Andreassen, Ole A; van Velzen, Laura S; Schmaal, Lianne; Villalón-Reina, Julio E; Bearden, Carrie E; Piras, Fabrizio; Spalletta, Gianfranco; van den Heuvel, Odile A; Veltman, Dick J; Stein, Dan J; Ryan, Meghann C; Tan, Yunlong; van Erp, Theo G M; Turner, Jessica A; Haddad, Liz; Nir, Talia M; Glahn, David C; Thompson, Paul M; Jahanshad, Neda | Human brain mapping | 2022 Jan | 32301246 | |
| A structured model for immune exposures. | Vita, Randi; Overton, James A; Dunn, Patrick; Cheung, Kei-Hoi; Kleinstein, Steven H; Sette, Alessandro; Peters, Bjoern | Database : the journal of biological databases and curation | 2020 01 01 | 32283555 | |
| Automated Classification of Radiographic Knee Osteoarthritis Severity Using Deep Neural Networks. | Thomas, Kevin A; Kidziński, Łukasz; Halilaj, Eni; Fleming, Scott L; Venkataraman, Guhan R; Oei, Edwin H G; Gold, Garry E; Delp, Scott L | Radiology. Artificial intelligence | 2020 Mar 18 | 32280948 | |
| Region-specific sex differences in the hippocampus. | van Eijk, Liza; Hansell, Narelle K; Strike, Lachlan T; Couvy-Duchesne, Baptiste; de Zubicaray, Greig I; Thompson, Paul M; McMahon, Katie L; Zietsch, Brendan P; Wright, Margaret J | NeuroImage. | 2020 07 15; | 32278894 | |
| Parity is associated with cognitive function and brain age in both females and males. | Ning, Kaida; Zhao, Lu; Franklin, Meredith; Matloff, Will; Batta, Ishaan; Arzouni, Nibal; Sun, Fengzhu; Toga, Arthur W | Scientific reports | 2020 04 08 | 32269255 | |
| EIF3H Orchestrates Hippo Pathway-Mediated Oncogenesis via Catalytic Control of YAP Stability. | Zhou, Zhuan; Zhou, Honghong; Ponzoni, Luca; Luo, Aiping; Zhu, Rui; He, Mingjing; Huang, Yi; Guan, Kun-Liang; Bahar, Ivet; Liu, Zhihua; Wan, Yong | Cancer research. | 2020 Jun 15; | 32269044 | |
| G2SAT: Learning to Generate SAT Formulas. | You, Jiaxuan; Wu, Haoze; Barrett, Clark; Ramanujan, Raghuram; Leskovec, Jure | Advances in neural information processing systems. | 2019 Dec; | 32265581 | |
| GNNExplainer: Generating Explanations for Graph Neural Networks. | Ying, Rex; Bourgeois, Dylan; You, Jiaxuan; Zitnik, Marinka; Leskovec, Jure | Advances in neural information processing systems. | 2019 Dec; | 32265580 | |
| Optimizing Connectivity-Driven Brain Parcellation Using Ensemble Clustering. | Kurmukov, Anvar; Mussabaeva, Ayagoz; Denisova, Yulia; Moyer, Daniel; Jahanshad, Neda; Thompson, Paul M; Gutman, Boris A | Brain connectivity. | 2020 05; | 32264696 | |
| Hyperbolic Graph Convolutional Neural Networks. | Chami, Ines; Ying, Rex; Ré, Christopher; Leskovec, Jure | Advances in neural information processing systems. | 2019 Dec; | 32256024 | |
| Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study. | Tu, Yanshuai; Mi, Liang; Zhang, Wen; Zhang, Haomeng; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Gu, Xianfeng; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative | Neuroinformatics. | 2020 Apr 06; | 32253701 | |
| Scanner invariant representations for diffusion MRI harmonization. | Moyer, Daniel; Ver Steeg, Greg; Tax, Chantal M W; Thompson, Paul M | Magnetic resonance in medicine. | 2020 Apr 06; | 32250475 | |
| GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets. | Gutiérrez-Sacristán, Alba; De Niz, Carlos; Kothari, Cartik; Kong, Sek Won; Mandl, Kenneth D; Avillach, Paul | Briefings in bioinformatics | 2021 01 18 | 32249310 | |
| A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer. | Wagner, Alex H; Walsh, Brian; Mayfield, Georgia; Tamborero, David; Sonkin, Dmitriy; Krysiak, Kilannin; Deu-Pons, Jordi; Duren, Ryan P; Gao, Jianjiong; McMurry, Julie; Patterson, Sara; Del Vecchio Fitz, Catherine; Pitel, Beth A; Sezerman, Ozman U; Ellrott, Kyle; Warner, Jeremy L; Rieke, Damian T; Aittokallio, Tero; Cerami, Ethan; Ritter, Deborah I; Schriml, Lynn M; Freimuth, Robert R; Haendel, Melissa; Raca, Gordana; Madhavan, Subha; Baudis, Michael; Beckmann, Jacques S; Dienstmann, Rodrigo; Chakravarty, Debyani; Li, Xuan Shirley; Mockus, Susan; Elemento, Olivier; Schultz, Nikolaus; Lopez-Bigas, Nuria; Lawler, Mark; Goecks, Jeremy; Griffith, Malachi; Griffith, Obi L; Margolin, Adam A; Variant Interpretation for Cancer Consortium | Nature genetics. | 2020 04; | 32246132 | |
| Foot strike pattern during running alters muscle-tendon dynamics of the gastrocnemius and the soleus. | Yong, Jennifer R; Dembia, Christopher L; Silder, Amy; Jackson, Rachel W; Fredericson, Michael; Delp, Scott L | Scientific reports. | 2020 Apr 03; | 32245985 | |
| Use of social media to assess the impact of equitable state policies on LGBTQ patient experiences: An exploratory study. | Hswen, Yulin; Zhang, Amanda; Sewalk, Kara; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared B | Healthcare (Amsterdam, Netherlands). | 2020 Jun; | 32241681 | |
| The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. | Gonçalves, Rafael S; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A | The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference. | 2017 Oct; | 32219223 | |
| Scene Graph Prediction with Limited Labels. | Chen, Vincent S; Varma, Paroma; Krishna, Ranjay; Bernstein, Michael; Ré, Christopher; Fei-Fei, Li | Proceedings. IEEE International Conference on Computer Vision. | 2019 Oct-Nov; | 32218709 | |
| The Relationship Between White Matter Microstructure and General Cognitive Ability in Patients With Schizophrenia and Healthy Participants in the ENIGMA Consortium. | Holleran, Laurena; Kelly, Sinead; Alloza, Clara; Agartz, Ingrid; Andreassen, Ole A; Arango, Celso; Banaj, Nerisa; Calhoun, Vince; Cannon, Dara; Carr, Vaughan; Corvin, Aiden; Glahn, David C; Gur, Ruben; Hong, Elliot; Hoschl, Cyril; Howells, Fleur M; James, Anthony; Janssen, Joost; Kochunov, Peter; Lawrie, Stephen M; Liu, Jingyu; Martinez, Covadonga; McDonald, Colm; Morris, Derek; Mothersill, David; Pantelis, Christos; Piras, Fabrizio; Potkin, Steven; Rasser, Paul E; Roalf, David; Rowland, Laura; Satterthwaite, Theodore; Schall, Ulrich; Spalletta, Gianfranco; Spaniel, Filip; Stein, Dan J; Uhlmann, Anne; Voineskos, Aristotle; Zalesky, Andrew; van Erp, Theo G M; Turner, Jessica A; Deary, Ian J; Thompson, Paul M; Jahanshad, Neda; Donohoe, Gary | The American journal of psychiatry | 2020 06 01 | 32212855 | |
| Subcortical shape alterations in major depressive disorder: Findings from the ENIGMA major depressive disorder working group. | Ho, Tiffany C; Gutman, Boris; Pozzi, Elena; Grabe, Hans J; Hosten, Norbert; Wittfeld, Katharina; Völzke, Henry; Baune, Bernhard; Dannlowski, Udo; Förster, Katharina; Grotegerd, Dominik; Redlich, Ronny; Jansen, Andreas; Kircher, Tilo; Krug, Axel; Meinert, Susanne; Nenadic, Igor; Opel, Nils; Dinga, Richard; Veltman, Dick J; Schnell, Knut; Veer, Ilya; Walter, Henrik; Gotlib, Ian H; Sacchet, Matthew D; Aleman, André; Groenewold, Nynke A; Stein, Dan J; Li, Meng; Walter, Martin; Ching, Christopher R K; Jahanshad, Neda; Ragothaman, Anjanibhargavi; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Thompson, Paul M; Sämann, Philipp G; Schmaal, Lianne | Human brain mapping. | 2020 Mar 21; | 32198905 | |
| ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries. | Thompson, Paul M; Jahanshad, Neda; Ching, Christopher R K; Salminen, Lauren E; Thomopoulos, Sophia I; Bright, Joanna; Baune, Bernhard T; Bertolín, Sara; Bralten, Janita; Bruin, Willem B; Bülow, Robin; Chen, Jian; Chye, Yann; Dannlowski, Udo; de Kovel, Carolien G F; Donohoe, Gary; Eyler, Lisa T; Faraone, Stephen V; Favre, Pauline; Filippi, Courtney A; Frodl, Thomas; Garijo, Daniel; Gil, Yolanda; Grabe, Hans J; Grasby, Katrina L; Hajek, Tomas; Han, Laura K M; Hatton, Sean N; Hilbert, Kevin; Ho, Tiffany C; Holleran, Laurena; Homuth, Georg; Hosten, Norbert; Houenou, Josselin; Ivanov, Iliyan; Jia, Tianye; Kelly, Sinead; Klein, Marieke; Kwon, Jun Soo; Laansma, Max A; Leerssen, Jeanne; Lueken, Ulrike; Nunes, Abraham; Neill, Joseph O'; Opel, Nils; Piras, Fabrizio; Piras, Federica; Postema, Merel C; Pozzi, Elena; Shatokhina, Natalia; Soriano-Mas, Carles; Spalletta, Gianfranco; Sun, Daqiang; Teumer, Alexander; Tilot, Amanda K; Tozzi, Leonardo; van der Merwe, Celia; Van Someren, Eus J W; van Wingen, Guido A; Völzke, Henry; Walton, Esther; Wang, Lei; Winkler, Anderson M; Wittfeld, Katharina; Wright, Margaret J; Yun, Je-Yeon; Zhang, Guohao; Zhang-James, Yanli; Adhikari, Bhim M; Agartz, Ingrid; Aghajani, Moji; Aleman, André; Althoff, Robert R; Altmann, Andre; Andreassen, Ole A; Baron, David A; Bartnik-Olson, Brenda L; Marie Bas-Hoogendam, Janna; Baskin-Sommers, Arielle R; Bearden, Carrie E; Berner, Laura A; Boedhoe, Premika S W; Brouwer, Rachel M; Buitelaar, Jan K; Caeyenberghs, Karen; Cecil, Charlotte A M; Cohen, Ronald A; Cole, James H; Conrod, Patricia J; De Brito, Stephane A; de Zwarte, Sonja M C; Dennis, Emily L; Desrivieres, Sylvane; Dima, Danai; Ehrlich, Stefan; Esopenko, Carrie; Fairchild, Graeme; Fisher, Simon E; Fouche, Jean-Paul; Francks, Clyde; Frangou, Sophia; Franke, Barbara; Garavan, Hugh P; Glahn, David C; Groenewold, Nynke A; Gurholt, Tiril P; Gutman, Boris A; Hahn, Tim; Harding, Ian H; Hernaus, Dennis; Hibar, Derrek P; Hillary, Frank G; Hoogman, Martine; Hulshoff Pol, Hilleke E; Jalbrzikowski, Maria; Karkashadze, George A; Klapwijk, Eduard T; Knickmeyer, Rebecca C; Kochunov, Peter; Koerte, Inga K; Kong, Xiang-Zhen; Liew, Sook-Lei; Lin, Alexander P; Logue, Mark W; Luders, Eileen; Macciardi, Fabio; Mackey, Scott; Mayer, Andrew R; McDonald, Carrie R; McMahon, Agnes B; Medland, Sarah E; Modinos, Gemma; Morey, Rajendra A; Mueller, Sven C; Mukherjee, Pratik; Namazova-Baranova, Leyla; Nir, Talia M; Olsen, Alexander; Paschou, Peristera; Pine, Daniel S; Pizzagalli, Fabrizio; Rentería, Miguel E; Rohrer, Jonathan D; Sämann, Philipp G; Schmaal, Lianne; Schumann, Gunter; Shiroishi, Mark S; Sisodiya, Sanjay M; Smit, Dirk J A; Sønderby, Ida E; Stein, Dan J; Stein, Jason L; Tahmasian, Masoud; Tate, David F; Turner, Jessica A; van den Heuvel, Odile A; van der Wee, Nic J A; van der Werf, Ysbrand D; van Erp, Theo G M; van Haren, Neeltje E M; van Rooij, Daan; van Velzen, Laura S; Veer, Ilya M; Veltman, Dick J; Villalon-Reina, Julio E; Walter, Henrik; Whelan, Christopher D; Wilde, Elisabeth A; Zarei, Mojtaba; Zelman, Vladimir; ENIGMA Consortium | Translational psychiatry. | 2020 Mar 20; | 32198361 | |
| The genetic architecture of the human cerebral cortex. | Grasby, Katrina L (see original citation for additional authors) | Science (New York, N.Y.). | 2020 03 20; | 32193296 | |
| Wikidata as a knowledge graph for the life sciences. | Waagmeester, Andra; Stupp, Gregory; Burgstaller-Muehlbacher, Sebastian; Good, Benjamin M; Griffith, Malachi; Griffith, Obi L; Hanspers, Kristina; Hermjakob, Henning; Hudson, Toby S; Hybiske, Kevin; Keating, Sarah M; Manske, Magnus; Mayers, Michael; Mietchen, Daniel; Mitraka, Elvira; Pico, Alexander R; Putman, Timothy; Riutta, Anders; Queralt-Rosinach, Nuria; Schriml, Lynn M; Shafee, Thomas; Slenter, Denise; Stephan, Ralf; Thornton, Katherine; Tsueng, Ginger; Tu, Roger; Ul-Hasan, Sabah; Willighagen, Egon; Wu, Chunlei; Su, Andrew I | eLife. | 2020 Mar 17; | 32180547 | |
| FKBP5 haplotypes and PTSD modulate the resting-state brain activity in Han Chinese adults who lost their only child. | Qi, Rongfeng; Luo, Yifeng; Zhang, Li; Weng, Yifei; Surento, Wesley; Jahanshad, Neda; Xu, Qiang; Yin, Yan; Li, Lingjiang; Cao, Zhihong; Thompson, Paul M; Lu, Guang Ming | Translational psychiatry. | 2020 Mar 13; | 32170058 | |
| Mutation effect estimation on protein-protein interactions using deep contextualized representation learning. | Zhou, Guangyu; Chen, Muhao; Ju, Chelsea J T; Wang, Zheng; Jiang, Jyun-Yu; Wang, Wei | NAR genomics and bioinformatics | 2020 Jun | 32166223 | |
| Publisher Correction: Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma. | Chen, Bin; Garmire, Lana; Calvisi, Diego F; Chua, Mei-Sze; Kelley, Robin K; Chen, Xin | Nature reviews. Gastroenterology & hepatology | 2020 Mar 11 | 32161375 | |
| Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization. | Bravo, Rafael R; Baratchart, Etienne; West, Jeffrey; Schenck, Ryan O; Miller, Anna K; Gallaher, Jill; Gatenbee, Chandler D; Basanta, David; Robertson-Tessi, Mark; Anderson, Alexander R A | PLoS computational biology. | 2020 03; | 32155140 | |
| An overview of the first 5?years of the ENIGMA obsessive-compulsive disorder working group: The power of worldwide collaboration. | van den Heuvel, Odile A; Boedhoe, Premika S W; Bertolin, Sara; Bruin, Willem B; Francks, Clyde; Ivanov, Iliyan; Jahanshad, Neda; Kong, Xiang-Zhen; Kwon, Jun Soo; O'Neill, Joseph; Paus, Tomas; Patel, Yash; Piras, Fabrizio; Schmaal, Lianne; Soriano-Mas, Carles; Spalletta, Gianfranco; van Wingen, Guido A; Yun, Je-Yeon; Vriend, Chris; Simpson, H Blair; van Rooij, Daan; Hoexter, Marcelo Q; Hoogman, Martine; Buitelaar, Jan K; Arnold, Paul; Beucke, Jan C; Benedetti, Francesco; Bollettini, Irene; Bose, Anushree; Brennan, Brian P; De Nadai, Alessandro S; Fitzgerald, Kate; Gruner, Patricia; Grünblatt, Edna; Hirano, Yoshiyuki; Huyser, Chaim; James, Anthony; Koch, Kathrin; Kvale, Gerd; Lazaro, Luisa; Lochner, Christine; Marsh, Rachel; Mataix-Cols, David; Morgado, Pedro; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika; Pittenger, Christopher; Reddy, Y C Janardhan; Sato, João R; Soreni, Noam; Stewart, S Evelyn; Taylor, Stephan F; Tolin, David; Thomopoulos, Sophia I; Veltman, Dick J; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; Thompson, Paul M; Stein, Dan J; ENIGMA-OCD working group | Human brain mapping. | 2020 Mar 10; | 32154629 | |
| Resting-state ''physiological networks''. | Chen, Jingyuan E; Lewis, Laura D; Chang, Catie; Tian, Qiyuan; Fultz, Nina E; Ohringer, Ned A; Rosen, Bruce R; Polimeni, Jonathan R | NeuroImage. | 2020 Jun; | 32145437 | |
| Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records. | Zong, Nansu; Wen, Andrew; Stone, Daniel J; Sharma, Deepak K; Wang, Chen; Yu, Yue; Liu, Hongfang; Shi, Qian; Jiang, Guoqian | JCO clinical cancer informatics. | 2020 03; | 32134686 | |
| Educational attainment polygenic scores are associated with cortical total surface area and regions important for language and memory. | Mitchell, Brittany L; Cuéllar-Partida, Gabriel; Grasby, Katrina L; Campos, Adrian I; Strike, Lachlan T; Hwang, Liang-Dar; Okbay, Aysu; Thompson, Paul M; Medland, Sarah E; Martin, Nicholas G; Wright, Margaret J; Rentería, Miguel E | NeuroImage. | 2020 05 15; | 32126298 | |
| Modernizing the Methods and Analytics Curricula for Health Science Doctoral Programs. | Dinov, Ivo D | Frontiers in public health. | 2020; | 32117857 | |
| Semantic concept schema of the linear mixed model of experimental observations. | ?wiek-Kupczy?ska, Hanna; Filipiak, Katarzyna; Markiewicz, Augustyn; Rocca-Serra, Philippe; Gonzalez-Beltran, Alejandra N; Sansone, Susanna-Assunta; Millet, Emilie J; van Eeuwijk, Fred; ?awrynowicz, Agnieszka; Krajewski, Pawe? | Scientific data. | 2020 02 27; | 32109232 | |
| Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format. | Eng, Jimmy K; Deutsch, Eric W | Proteomics. | 2020 Feb 27; | 32106352 | |
| BrainAGE and regional volumetric analysis of a Buddhist monk: a longitudinal MRI case study. | Adluru, Nagesh; Korponay, Cole H; Norton, Derek L; Goldman, Robin I; Davidson, Richard J | Neurocase. | 2020 04; | 32100616 | |
| Anastrozole has an Association between Degree of Estrogen Suppression and Outcomes in Early Breast Cancer and is a Ligand for Estrogen Receptor ?. | Ingle, James N; Cairns, Junmei; Suman, Vera J; Shepherd, Lois E; Fasching, Peter A; Hoskin, Tanya L; Singh, Ravinder J; Desta, Zeruesenay; Kalari, Krishna R; Ellis, Matthew J; Goss, Paul E; Chen, Bingshu E; Volz, Bernhard; Barman, Poulami; Carlson, Erin E; Haddad, Tufia; Goetz, Matthew P; Goodnature, Barbara; Cuellar, Matthew E; Walters, Michael A; Correia, Cristina; Kaufmann, Scott H; Weinshilboum, Richard M; Wang, Liewei | Clinical cancer research : an official journal of the American Association for Cancer Research. | 2020 Jun 15; | 32098767 | |
| Bayesian Framework for Detecting Gene Expression Outliers in Individual Samples. | Vivian, John; Eizenga, Jordan M; Beale, Holly C; Vaske, Olena M; Paten, Benedict | JCO clinical cancer informatics. | 2020 Feb; | 32097024 | |
| Contribution of common and rare variants to bipolar disorder susceptibility in extended pedigrees from population isolates. | Sul, Jae Hoon; Service, Susan K; Huang, Alden Y; Ramensky, Vasily; Hwang, Sun-Goo; Teshiba, Terri M; Park, YoungJun; Ori, Anil P S; Zhang, Zhongyang; Mullins, Niamh; Olde Loohuis, Loes M; Fears, Scott C; Araya, Carmen; Araya, Xinia; Spesny, Mitzi; Bejarano, Julio; Ramirez, Margarita; Castrillón, Gabriel; Gomez-Makhinson, Juliana; Lopez, Maria C; Montoya, Gabriel; Montoya, Claudia P; Aldana, Ileana; Escobar, Javier I; Ospina-Duque, Jorge; Kremeyer, Barbara; Bedoya, Gabriel; Ruiz-Linares, Andres; Cantor, Rita M; Molina, Julio; Coppola, Giovanni; Ophoff, Roel A; Macaya, Gabriel; Lopez-Jaramillo, Carlos; Reus, Victor; Bearden, Carrie E; Sabatti, Chiara; Freimer, Nelson B | Translational psychiatry. | 2020 Feb 24; | 32094344 | |
| Magnitude and timing of major white matter tract maturation from infancy through adolescence with NODDI. | Lynch, Kirsten M; Cabeen, Ryan P; Toga, Arthur W; Clark, Kristi A | NeuroImage. | 2020 May 15; | 32092432 | |
| sMRT: Multi-Resident Tracking in Smart Homes with Sensor Vectorization. | Wang, Tinghui; Cook, Diane J | IEEE transactions on pattern analysis and machine intelligence. | 2020 Feb 13; | 32070942 | |
| Deep Learning-driven research for drug discovery: Tackling Malaria. | Neves, Bruno J; Braga, Rodolpho C; Alves, Vinicius M; Lima, Marília N N; Cassiano, Gustavo C; Muratov, Eugene N; Costa, Fabio T M; Andrade, Carolina Horta | PLoS computational biology. | 2020 02; | 32069285 | |
| Developing a Suite of Online Learning Modules on the Components of Next-Generation Sequencing Projects. | Wright, Robert A | Medical reference services quarterly. | 2020 Jan-Mar; | 32069203 | |
| Small airways pathology in idiopathic pulmonary fibrosis: a retrospective cohort study. | Verleden, Stijn E; Tanabe, Naoya; McDonough, John E; Vasilescu, Drago? M; Xu, Feng; Wuyts, Wim A; Piloni, Davide; De Sadeleer, Laurens; Willems, Stijn; Mai, Cindy; Hostens, Jeroen; Cooper, Joel D; Verbeken, Erik K; Verschakelen, Johny; Galban, Craig J; Van Raemdonck, Dirk E; Colby, Thomas V; Decramer, Marc; Verleden, Geert M; Kaminski, Naftali; Hackett, Tillie-Louise; Vanaudenaerde, Bart M; Hogg, James C | The Lancet. Respiratory medicine. | 2020 Jun; | 32061334 | |
| Genotyping structural variants in pangenome graphs using the vg toolkit. | Hickey, Glenn; Heller, David; Monlong, Jean; Sibbesen, Jonas A; Sirén, Jouni; Eizenga, Jordan; Dawson, Eric T; Garrison, Erik; Novak, Adam M; Paten, Benedict | Genome biology. | 2020 Feb 12; | 32051000 | |
| Mapping Subcortical Brain Alterations in 22q11.2 Deletion Syndrome: Effects of Deletion Size and Convergence With Idiopathic Neuropsychiatric Illness. | Ching, Christopher R K; Gutman, Boris A; Sun, Daqiang; Villalon Reina, Julio; Ragothaman, Anjanibhargavi; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Lin, Amy; Jonas, Rachel K; Kushan, Leila; Pacheco-Hansen, Laura; Vajdi, Ariana; Forsyth, Jennifer K; Jalbrzikowski, Maria; Bakker, Geor; van Amelsvoort, Therese; Antshel, Kevin M; Fremont, Wanda; Kates, Wendy R; Campbell, Linda E; McCabe, Kathryn L; Craig, Michael C; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan G; Murphy, Kieran C; Fiksinski, Ania; Koops, Sanne; Vorstman, Jacob; Crowley, T Blaine; Emanuel, Beverly S; Gur, Raquel E; McDonald-McGinn, Donna M; Roalf, David R; Ruparel, Kosha; Schmitt, J Eric; Zackai, Elaine H; Durdle, Courtney A; Goodrich-Hunsaker, Naomi J; Simon, Tony J; Bassett, Anne S; Butcher, Nancy J; Chow, Eva W C; Vila-Rodriguez, Fidel; Cunningham, Adam; Doherty, Joanne; Linden, David E; Moss, Hayley; Owen, Michael J; van den Bree, Marianne; Crossley, Nicolas A; Repetto, Gabriela M; Thompson, Paul M; Bearden, Carrie E | The American journal of psychiatry. | 2020 07 01; | 32046535 | |
| Pan-mammalian analysis of molecular constraints underlying extended lifespan. | Kowalczyk, Amanda; Partha, Raghavendran; Clark, Nathan L; Chikina, Maria | eLife | 2020 02 11 | 32043462 | |
| The empirical replicability of task-based fMRI as a function of sample size. | Bossier, Han; Roels, Sanne P; Seurinck, Ruth; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner Dipl-Psych, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Moerkerke, Beatrijs; IMAGEN Consortium | NeuroImage. | 2020 05 15; | 32036019 | |
| Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data. | Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Wang, Chen; Liu, Hongfang; Jiang, Guoqian | JAMIA open. | 2019 Dec; | 32025655 | |
| Genetic contributors to risk of schizophrenia in the presence of a 22q11.2 deletion. | Cleynen, Isabelle; Engchuan, Worrawat; Hestand, Matthew S; Heung, Tracy; Holleman, Aaron M; Johnston, H Richard; Monfeuga, Thomas; McDonald-McGinn, Donna M; Gur, Raquel E; Morrow, Bernice E; Swillen, Ann; Vorstman, Jacob A S; Bearden, Carrie E; Chow, Eva W C; van den Bree, Marianne; Emanuel, Beverly S; Vermeesch, Joris R; Warren, Stephen T; Owen, Michael J; Chopra, Pankaj; Cutler, David J; Duncan, Richard; Kotlar, Alex V; Mulle, Jennifer G; Voss, Anna J; Zwick, Michael E; Diacou, Alexander; Golden, Aaron; Guo, Tingwei; Lin, Jhih-Rong; Wang, Tao; Zhang, Zhengdong; Zhao, Yingjie; Marshall, Christian; Merico, Daniele; Jin, Andrea; Lilley, Brenna; Salmons, Harold I; Tran, Oanh; Holmans, Peter; Pardinas, Antonio; Walters, James T R; Demaerel, Wolfram; Boot, Erik; Butcher, Nancy J; Costain, Gregory A; Lowther, Chelsea; Evers, Rens; van Amelsvoort, Therese A M J; van Duin, Esther; Vingerhoets, Claudia; Breckpot, Jeroen; Devriendt, Koen; Vergaelen, Elfi; Vogels, Annick; Crowley, T Blaine; McGinn, Daniel E; Moss, Edward M; Sharkus, Robert J; Unolt, Marta; Zackai, Elaine H; Calkins, Monica E; Gallagher, Robert S; Gur, Ruben C; Tang, Sunny X; Fritsch, Rosemarie; Ornstein, Claudia; Repetto, Gabriela M; Breetvelt, Elemi; Duijff, Sasja N; Fiksinski, Ania; Moss, Hayley; Niarchou, Maria; Murphy, Kieran C; Prasad, Sarah E; Daly, Eileen M; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan G; Buzzanca, Antonio; Fabio, Fabio Di; Digilio, Maria C; Pontillo, Maria; Marino, Bruno; Vicari, Stefano; Coleman, Karlene; Cubells, Joseph F; Ousley, Opal Y; Carmel, Miri; Gothelf, Doron; Mekori-Domachevsky, Ehud; Michaelovsky, Elena; Weinberger, Ronnie; Weizman, Abraham; Kushan, Leila; Jalbrzikowski, Maria; Armando, Marco; Eliez, Stéphan; Sandini, Corrado; Schneider, Maude; Béna, Frédérique Sloan; Antshel, Kevin M; Fremont, Wanda; Kates, Wendy R; Belzeaux, Raoul; Busa, Tiffany; Philip, Nicole; Campbell, Linda E; McCabe, Kathryn L; Hooper, Stephen R; Schoch, Kelly; Shashi, Vandana; Simon, Tony J; Tassone, Flora; Arango, Celso; Fraguas, David; García-Miñaúr, Sixto; Morey-Canyelles, Jaume; Rosell, Jordi; Suñer, Damià H; Raventos-Simic, Jasna; International 22q11.2DS Brain and Behavior Consortium; Epstein, Michael P; Williams, Nigel M; Bassett, Anne S | Molecular psychiatry. | 2020 Feb 03; | 32015465 | |
| Association of relative brain age with tobacco smoking, alcohol consumption, and genetic variants. | Ning, Kaida; Zhao, Lu; Matloff, Will; Sun, Fengzhu; Toga, Arthur W | Scientific reports | 2020 01 30 | 32001736 | |
| Genetic correlations between subcortical brain volumes and psychiatric disorders. | Ohi, Kazutaka; Shimada, Takamitsu; Kataoka, Yuzuru; Yasuyama, Toshiki; Kawasaki, Yasuhiro; Shioiri, Toshiki; Thompson, Paul M | The British journal of psychiatry : the journal of mental science. | 2020 05; | 32000869 | |
| Decreased functional connectivity of hippocampal subregions and methylation of the NR3C1 gene in Han Chinese adults who lost their only child. | Qi, Rongfeng; Luo, Yifeng; Zhang, Li; Weng, Yifei; Surento, Wesley; Xu, Qiang; Jahanshad, Neda; Li, Lingjiang; Cao, Zhihong; Lu, Guang Ming; Thompson, Paul M | Psychological medicine | 2020 Jan 27 | 31983347 | |
| Knowledge-guided analysis of ''omics'' data using the KnowEnG cloud platform. | Blatti 3rd, Charles; Emad, Amin; Berry, Matthew J; Gatzke, Lisa; Epstein, Milt; Lanier, Daniel; Rizal, Pramod; Ge, Jing; Liao, Xiaoxia; Sobh, Omar; Lambert, Mike; Post, Corey S; Xiao, Jinfeng; Groves, Peter; Epstein, Aidan T; Chen, Xi; Srinivasan, Subhashini; Lehnert, Erik; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard M; Song, Jun S; Jongeneel, C Victor; Han, Jiawei; Ravaioli, Umberto; Sobh, Nahil; Bushell, Colleen B; Sinha, Saurabh | PLoS biology. | 2020 01; | 31971940 | |
| Tissue-guided LASSO for prediction of clinical drug response using preclinical samples. | Huang, Edward W; Bhope, Ameya; Lim, Jing; Sinha, Saurabh; Emad, Amin | PLoS computational biology. | 2020 01; | 31967990 | |
| De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population. | Kessler, Michael D; Loesch, Douglas P; Perry, James A; Heard-Costa, Nancy L; Taliun, Daniel; Cade, Brian E; Wang, Heming; Daya, Michelle; Ziniti, John; Datta, Soma; Celedón, Juan C; Soto-Quiros, Manuel E; Avila, Lydiana; Weiss, Scott T; Barnes, Kathleen; Redline, Susan S; Vasan, Ramachandran S; Johnson, Andrew D; Mathias, Rasika A; Hernandez, Ryan; Wilson, James G; Nickerson, Deborah A; Abecasis, Goncalo; Browning, Sharon R; Zöllner, Sebastian; O'Connell, Jeffrey R; Mitchell, Braxton D; National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Population Genetics Working Group; O'Connor, Timothy D | Proceedings of the National Academy of Sciences of the United States of America | 2020 02 04 | 31964835 | |
| Privacy-preserving model learning on a blockchain network-of-networks. | Kuo, Tsung-Ting; Kim, Jihoon; Gabriel, Rodney A | Journal of the American Medical Informatics Association : JAMIA. | 2020 Mar 01; | 31943009 | |
| Rare copy number variants in over 100,000 European ancestry subjects reveal multiple disease associations. | Li, Yun Rose; Glessner, Joseph T; Coe, Bradley P; Li, Jin; Mohebnasab, Maede; Chang, Xiao; Connolly, John; Kao, Charlly; Wei, Zhi; Bradfield, Jonathan; Kim, Cecilia; Hou, Cuiping; Khan, Munir; Mentch, Frank; Qiu, Haijun; Bakay, Marina; Cardinale, Christopher; Lemma, Maria; Abrams, Debra; Bridglall-Jhingoor, Andrew; Behr, Meckenzie; Harrison, Shanell; Otieno, George; Thomas, Alexandria; Wang, Fengxiang; Chiavacci, Rosetta; Wu, Lawrence; Hadley, Dexter; Goldmuntz, Elizabeth; Elia, Josephine; Maris, John; Grundmeier, Robert; Devoto, Marcella; Keating, Brendan; March, Michael; Pellagrino, Renata; Grant, Struan F A; Sleiman, Patrick M A; Li, Mingyao; Eichler, Evan E; Hakonarson, Hakon | Nature communications. | 2020 01 14; | 31937769 | |
| Sympathetic activity contributes to the fMRI signal. | Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, Jeff | Communications biology. | 2019 Nov 18; | 31925226 | |
| Ancestral Folate Promotes Neuronal Regeneration in Serial Generations of Progeny. | Patel, Nirav J; Hogan, Kirk J; Rizk, Elias; Stewart, Krista; Madrid, Andy; Vadakkadath Meethal, Sivan; Alisch, Reid; Borth, Laura; Papale, Ligia A; Ondoma, Solomon; Gorges, Logan R; Weber, Kara; Lake, Wendell; Bauer, Andrew; Hariharan, Nithya; Kuehn, Thomas; Cook, Thomas; Keles, Sunduz; Newton, Michael A; Iskandar, Bermans J | Molecular neurobiology. | 2020 Jan 10; | 31919777 | |
| BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization. | Liang, Lifan; Zhu, Kunju; Lu, Songjian | Bioinformatics (Oxford, England) | 2020 07 01 | 31913438 | |
| Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data. | Pratapa, Aditya; Jalihal, Amogh P; Law, Jeffrey N; Bharadwaj, Aditya; Murali, T M | Nature methods. | 2020 Feb; | 31907445 | |
| Machine and deep learning approaches for cancer drug repurposing. | Issa, Naiem T; Stathias, Vasileios; Schürer, Stephan; Dakshanamurthy, Sivanesan | Seminars in cancer biology. | 2020 Jan 03; | 31904426 | |
| Brain Imaging Genomics: Integrated Analysis and Machine Learning. | Shen, Li; Thompson, Paul M | Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. | 2020 Jan; | 31902950 | |
| Impaired vigilance networks in temporal lobe epilepsy: Mechanisms and clinical implications. | Englot, Dario J; Morgan, Victoria L; Chang, Catie | Epilepsia. | 2020 Feb; | 31901182 | |
| Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma. | Chen, Bin; Garmire, Lana; Calvisi, Diego F; Chua, Mei-Sze; Kelley, Robin K; Chen, Xin | Nature reviews. Gastroenterology & hepatology. | 2020 Apr; | 31900465 | |
| Large-Scale Simultaneous Testing of Cross-Covariance Matrices with Applications to PheWAS. | Cai, Tianxi; Cai, T Tony; Liao, Katherine; Liu, Weidong | Statistica Sinica. | 2019 Apr; | 31889766 | |
| On the Downstream Performance of Compressed Word Embeddings. | May, Avner; Zhang, Jian; Dao, Tri; Ré, Christopher | Advances in neural information processing systems. | 2019 Dec; | 31885428 | |
| Slice-based Learning: A Programming Model for Residual Learning in Critical Data Slices. | Chen, Vincent S; Wu, Sen; Weng, Zhenzhen; Ratner, Alexander; Ré, Christopher | Advances in neural information processing systems. | 2019 Dec; | 31871391 | |
| A Geometric Framework for Feature Mappings in Multimodal Fusion of Brain Image Data. | Zhang, Wen; Mi, Liang; Thompson, Paul M; Wang, Yalin | Information processing in medical imaging : proceedings of the ... conference. | 2019 Jun; | 31871388 | |
| Prevalence of Inherited Mutations in Breast Cancer Predisposition Genes among Women in Uganda and Cameroon. | Adedokun, Babatunde; Zheng, Yonglan; Ndom, Paul; Gakwaya, Antony; Makumbi, Timothy; Zhou, Alicia Y; Yoshimatsu, Toshio F; Rodriguez, Alex; Madduri, Ravi K; Foster, Ian T; Sallam, Aminah; Olopade, Olufunmilayo I; Huo, Dezheng | Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. | 2020 Feb; | 31871109 | |
| Analytic and Data Sharing Options in Real-World Multidatabase Studies of Comparative Effectiveness and Safety of Medical Products. | Toh, Sengwee | Clinical pharmacology and therapeutics. | 2019 Dec 23; | 31869442 | |
| Heterogeneous network embedding enabling accurate disease association predictions. | Xiong, Yun; Guo, Mengjie; Ruan, Lu; Kong, Xiangnan; Tang, Chunlei; Zhu, Yangyong; Wang, Wei | BMC medical genomics. | 2019 12 23; | 31865913 | |
| Altered white matter microstructural organization in posttraumatic stress disorder across 3047 adults: results from the PGC-ENIGMA PTSD consortium. | Dennis, Emily L; Disner, Seth G; Fani, Negar; Salminen, Lauren E; Logue, Mark; Clarke, Emily K; Haswell, Courtney C; Averill, Christopher L; Baugh, Lee A; Bomyea, Jessica; Bruce, Steven E; Cha, Jiook; Choi, Kyle; Davenport, Nicholas D; Densmore, Maria; du Plessis, Stefan; Forster, Gina L; Frijling, Jessie L; Gonenc, Atilla; Gruber, Staci; Grupe, Daniel W; Guenette, Jeffrey P; Hayes, Jasmeet; Hofmann, David; Ipser, Jonathan; Jovanovic, Tanja; Kelly, Sinead; Kennis, Mitzy; Kinzel, Philipp; Koch, Saskia B J; Koerte, Inga; Koopowitz, Sheri; Korgaonkar, Mayuresh; Krystal, John; Lebois, Lauren A M; Li, Gen; Magnotta, Vincent A; Manthey, Antje; May, Geoff J; Menefee, Deleene S; Nawijn, Laura; Nelson, Steven M; Neufeld, Richard W J; Nitschke, Jack B; O'Doherty, Daniel; Peverill, Matthew; Ressler, Kerry J; Roos, Annerine; Sheridan, Margaret A; Sierk, Anika; Simmons, Alan; Simons, Raluca M; Simons, Jeffrey S; Stevens, Jennifer; Suarez-Jimenez, Benjamin; Sullivan, Danielle R; Théberge, Jean; Tran, Jana K; van den Heuvel, Leigh; van der Werff, Steven J A; van Rooij, Sanne J H; van Zuiden, Mirjam; Velez, Carmen; Verfaellie, Mieke; Vermeiren, Robert R J M; Wade, Benjamin S C; Wager, Tor; Walter, Henrik; Winternitz, Sherry; Wolff, Jonathan; York, Gerald; Zhu, Ye; Zhu, Xi; Abdallah, Chadi G; Bryant, Richard; Daniels, Judith K; Davidson, Richard J; Fercho, Kelene A; Franz, Carol; Geuze, Elbert; Gordon, Evan M; Kaufman, Milissa L; Kremen, William S; Lagopoulos, Jim; Lanius, Ruth A; Lyons, Michael J; McCauley, Stephen R; McGlinchey, Regina; McLaughlin, Katie A; Milberg, William; Neria, Yuval; Olff, Miranda; Seedat, Soraya; Shenton, Martha; Sponheim, Scott R; Stein, Dan J; Stein, Murray B; Straube, Thomas; Tate, David F; van der Wee, Nic J A; Veltman, Dick J; Wang, Li; Wilde, Elisabeth A; Thompson, Paul M; Kochunov, Peter; Jahanshad, Neda; Morey, Rajendra A | Molecular psychiatry. | 2019 Dec 19; | 31857689 | |
| ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest. | Li, Jiajin; Jew, Brandon; Zhan, Lingyu; Hwang, Sungoo; Coppola, Giovanni; Freimer, Nelson B; Sul, Jae Hoon | PLoS computational biology. | 2019 Dec; | 31851693 | |
| Association of Gray Matter and Personality Development With Increased Drunkenness Frequency During Adolescence. | Robert, Gabriel H; Luo, Qiang; Yu, Tao; Chu, Congying; Ing, Alex; Jia, Tianye; Papadopoulos Orfanos, Dimitri; Burke-Quinlan, Erin; Desrivières, Sylvane; Ruggeri, Barbara; Spechler, Philip; Chaarani, Bader; Tay, Nicole; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Barker, Ted; Garavan, Hugh; Schumann, Gunter; IMAGEN Consortium | JAMA psychiatry | 2020 04 01 | 31851304 | |
| Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases. | Salfati, Elias L; Spencer, Emily G; Topol, Sarah E; Muse, Evan D; Rueda, Manuel; Lucas, Jonathan R; Wagner, Glenn N; Campman, Steven; Topol, Eric J; Torkamani, Ali | Genome medicine. | 2019 12 17; | 31847883 | |
| Analysis of stimulus-induced brain dynamics during naturalistic paradigms. | Simony, Erez; Chang, Catie | NeuroImage. | 2019 Dec 13; | 31843711 | |
| Learning High-dimensional Generalized Linear Autoregressive Models. | Hall, Eric C; Raskutti, Garvesh; Willett, Rebecca M | IEEE transactions on information theory. | 2019 Apr; | 31839683 | |
| Research Themes and Trends in Ten Top-Ranked Nephrology Journals: A Text Mining Analysis. | Zengul, Ferhat D; Lee, Timmy; Delen, Dursun; Almehmi, Ammar; Ivankova, Nataliya V; Mehta, Tapan; Topuz, Kazim | American journal of nephrology. | 2020; | 31838480 | |
| Leveraging allelic imbalance to refine fine-mapping for eQTL studies. | Zou, Jennifer; Hormozdiari, Farhad; Jew, Brandon; Castel, Stephane E; Lappalainen, Tuuli; Ernst, Jason; Sul, Jae Hoon; Eskin, Eleazar | PLoS genetics. | 2019 12; | 31834882 | |
| Engineered BRET-Based Biologic Light Sources Enable Spatiotemporal Control over Diverse Optogenetic Systems. | Parag-Sharma, Kshitij; O'Banion, Colin P; Henry, Erin C; Musicant, Adele M; Cleveland, John L; Lawrence, David S; Amelio, Antonio L | ACS synthetic biology. | 2020 01 17; | 31834783 | |
| Cortical Microstructural Alterations in Mild Cognitive Impairment and Alzheimer's Disease Dementia. | Vogt, Nicholas M; Hunt, Jack F; Adluru, Nagesh; Dean, Douglas C; Johnson, Sterling C; Asthana, Sanjay; Yu, John-Paul J; Alexander, Andrew L; Bendlin, Barbara B | Cerebral cortex (New York, N.Y. : 1991) | 2020 05 14 | 31833550 | |
| Cortical Surfaces Mediate the Relationship Between Polygenic Scores for Intelligence and General Intelligence. | Lett, Tristram A; Vogel, Bob O; Ripke, Stephan; Wackerhagen, Carolin; Erk, Susanne; Awasthi, Swapnil; Trubetskoy, Vassily; Brandl, Eva J; Mohnke, Sebastian; Veer, Ilya M; Nöthen, Markus M; Rietschel, Marcella; Degenhardt, Franziska; Romanczuk-Seiferth, Nina; Witt, Stephanie H; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Tost, Heike; Meyer-Lindenberg, Andreas; Heinz, Andreas; Walter, Henrik; IMAGEN consortium | Cerebral cortex (New York, N.Y. : 1991). | 2020 04 14; | 31828294 | |
| Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. | Barry, Christopher; Schmitz, Matthew T; Argus, Cara; Bolin, Jennifer M; Probasco, Mitchell D; Leng, Ning; Duffin, Bret M; Steill, John; Swanson, Scott; McIntosh, Brian E; Stewart, Ron; Kendziorski, Christina; Thomson, James A; Bacher, Rhonda | PLoS computational biology. | 2019 12; | 31815944 | |
| Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets. | Morrow, Alyssa Kramer; He, George Zhixuan; Nothaft, Frank Austin; Tu, Eric Tongching; Paschall, Justin; Yosef, Nir; Joseph, Anthony Douglas | Cell systems. | 2019 12 18; | 31812694 | |
| Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group. | Jia, Tianye; Chu, Congying; Liu, Yun; van Dongen, Jenny; Papastergios, Evangelos; Armstrong, Nicola J; Bastin, Mark E; Carrillo-Roa, Tania; den Braber, Anouk; Harris, Mathew; Jansen, Rick; Liu, Jingyu; Luciano, Michelle; Ori, Anil P S; Roiz Santiañez, Roberto; Ruggeri, Barbara; Sarkisyan, Daniil; Shin, Jean; Sungeun, Kim; Tordesillas Gutiérrez, Diana; Van't Ent, Dennis; Ames, David; Artiges, Eric; Bakalkin, Georgy; Banaschewski, Tobias; Bokde, Arun L W; Brodaty, Henry; Bromberg, Uli; Brouwer, Rachel; Büchel, Christian; Burke Quinlan, Erin; Cahn, Wiepke; de Zubicaray, Greig I; Ehrlich, Stefan; Ekström, Tomas J; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hoare, Jacqueline; Ittermann, Bernd; Jahanshad, Neda; Jiang, Jiyang; Kwok, John B; Martin, Nicholas G; Martinot, Jean-Luc; Mather, Karen A; McMahon, Katie L; McRae, Allan F; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Sämann, Philipp G; Schofield, Peter R; Smolka, Michael N; Stein, Dan J; Strike, Lachlan T; Teeuw, Jalmar; Thalamuthu, Anbupalam; Trollor, Julian; Walter, Henrik; Wardlaw, Joanna M; Wen, Wei; Whelan, Robert; Apostolova, Liana G; Binder, Elisabeth B; Boomsma, Dorret I; Calhoun, Vince; Crespo-Facorro, Benedicto; Deary, Ian J; Hulshoff Pol, Hilleke; Ophoff, Roel A; Pausova, Zdenka; Sachdev, Perminder S; Saykin, Andrew; Wright, Margaret J; Thompson, Paul M; Schumann, Gunter; Desrivières, Sylvane | Molecular psychiatry. | 2019 Dec 06; | 31811260 | |
| Privacy-protecting estimation of adjusted risk ratios using modified Poisson regression in multi-center studies. | Shu, Di; Young, Jessica G; Toh, Sengwee | BMC medical research methodology. | 2019 Dec 05; | 31805872 | |
| Learning the Structure of a Nonstationary Vector Autoregression. | Malinsky, Daniel; Spirtes, Peter | Proceedings of machine learning research. | 2019 Apr; | 31803862 | |
| Reactome and ORCID-fine-grained credit attribution for community curation. | Viteri, Guilherme; Matthews, Lisa; Varusai, Thawfeek; Gillespie, Marc; Milacic, Marija; Cook, Justin; Weiser, Joel; Shorser, Solomon; Sidiropoulos, Konstantinos; Fabregat, Antonio; Haw, Robin; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning | Database : the journal of biological databases and curation. | 2019 01 01; | 31802127 | |
| Recursive Feature Elimination by Sensitivity Testing. | Escanilla, Nicholas Sean; Hellerstein, Lisa; Kleiman, Ross; Kuang, Zhaobin; Shull, James D; Page, David | Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications. | 2018 Dec; | 31799516 | |
| Navigating ethical quandaries with the privacy dilemma of biomedical datasets. | Gürsoy, Gamze; Doerr, Megan; Wilbanks, John; Wagner, Jennifer K; Tang, Haixu; Brenner, Steven E | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2020; | 31797643 | |
| From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer. | Tao, Yifeng; Cai, Chunhui; Cohen, William W; Lu, Xinghua | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2020; | 31797588 | |
| Expertise and Engagement: Re-Designing Citizen Science Games With Players' Minds in Mind. | Miller, Josh Aaron; Narayan, Uttkarsh; Hantsbarger, Matthew; Cooper, Seth; El-Nasr, Magy Seif | FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. | 2019 Aug; | 31788674 | |
| A Kernel Theory of Modern Data Augmentation. | Dao, Tri; Gu, Albert; Ratner, Alexander J; Smith, Virginia; De Sa, Christopher; Ré, Christopher | Proceedings of machine learning research. | 2019 Jun; | 31777848 | |
| Learning Fast Algorithms for Linear Transforms Using Butterfly Factorizations. | Dao, Tri; Gu, Albert; Eichhorn, Matthew; Rudra, Atri; Ré, Christopher | Proceedings of machine learning research. | 2019 Jun; | 31777847 | |
| Low-Precision Random Fourier Features for Memory-Constrained Kernel Approximation. | Zhang, Jian; May, Avner; Dao, Tri; Ré, Christopher | Proceedings of machine learning research. | 2019 Apr; | 31777846 | |
| Snuba: Automating Weak Supervision to Label Training Data. | Varma, Paroma; Ré, Christopher | Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. | 2018 Nov; | 31777681 | |
| Snorkel DryBell: A Case Study in Deploying Weak Supervision at Industrial Scale. | Bach, Stephen H; Rodriguez, Daniel; Liu, Yintao; Luo, Chong; Shao, Haidong; Xia, Cassandra; Sen, Souvik; Ratner, Alex; Hancock, Braden; Alborzi, Houman; Kuchhal, Rahul; Ré, Chris; Malkin, Rob | Proceedings. ACM-Sigmod International Conference on Management of Data. | 2019 Jun-Jul; | 31777414 | |
| Designing Videogames to Crowdsource Accelerometer Data Annotation for Activity Recognition Research. | Ponnada, Aditya; Cooper, Seth; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, Stephen | Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play. | 2019 Oct; | 31768505 | |
| Sympathetic activity contributes to the fMRI signal. | Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, Jeff | Communications biology. | 2019; | 31754651 | |
| Subcortical surface morphometry in substance dependence: An ENIGMA addiction working group study. | Chye, Yann; Mackey, Scott; Gutman, Boris A; Ching, Christopher R K; Batalla, Albert; Blaine, Sara; Brooks, Samantha; Caparelli, Elisabeth C; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Jahanshad, Neda; Kaag, Anne M; Korucuoglu, Ozlem; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Meda, Shashwath A; Momenan, Reza; Morales, Angelica; Orr, Catherine; Paulus, Martin P; Pearlson, Godfrey; Reneman, Liesbeth; Schmaal, Lianne; Sinha, Rajita; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Tang, Deborah; Uhlmann, Anne; van Holst, Ruth; Veltman, Dick J; Verdejo-Garcia, Antonio; Wiers, Reinout W; Yücel, Murat; Thompson, Paul M; Conrod, Patricia; Garavan, Hugh | Addiction biology. | 2019 Nov 20; | 31746534 | |
| Genotype-dependent epigenetic regulation of DLGAP2 in alcohol use and dependence. | Meng, Weida; Sjöholm, Louise K; Kononenko, Olga; Tay, Nicole; Zhang, Dandan; Sarkisyan, Daniil; Geske, Jennifer R; Ing, Alex; Qiu, Wenqing; Watanabe, Hiroyuki; Almamoun, Radwa; Frieling, Helge; Bleich, Stefan; Cui, Donghong; Biernacka, Joanna M; Mayfield, R Dayne; Dang, Yongjun; Karpyak, Victor M; Schumann, Gunter; IMAGEN Consortium; Bakalkin, Georgy; Ekström, Tomas J; Rüegg, Joelle; Liu, Yun | Molecular psychiatry | 2021 08 | 31745236 | |
| When can Multi-Site Datasets be Pooled for Regression? Hypothesis Tests, ?2-consistency and Neuroscience Applications. | Zhou, Hao Henry; Zhang, Yilin; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas | Proceedings of machine learning research. | 2017 Aug; | 31742253 | |
| Nanopore native RNA sequencing of a human poly(A) transcriptome. | Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston | Nature methods | 2019 12 | 31740818 | |
| Interaction effect of alcohol consumption and Alzheimer disease polygenic risk score on the brain cortical thickness of cognitively normal subjects. | Matloff, William J; Zhao, Lu; Ning, Kaida; Conti, David V; Toga, Arthur W | Alcohol (Fayetteville, N.Y.). | 2020 Jun; | 31734309 | |
| Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. | Khatib, Firas; Desfosses, Ambroise; Foldit Players; Koepnick, Brian; Flatten, Jeff; Popovi?, Zoran; Baker, David; Cooper, Seth; Gutsche, Irina; Horowitz, Scott | PLoS biology. | 2019 11; | 31714936 | |
| Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data. | Pomaznoy, Mikhail; Sethi, Ashu; Greenbaum, Jason; Peters, Bjoern | Scientific reports. | 2019 Nov 08; | 31704962 | |
| LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. | Stathias, Vasileios; Turner, John; Koleti, Amar; Vidovic, Dusica; Cooper, Daniel; Fazel-Najafabadi, Mehdi; Pilarczyk, Marcin; Terryn, Raymond; Chung, Caty; Umeano, Afoma; Clarke, Daniel J B; Lachmann, Alexander; Evangelista, John Erol; Ma'ayan, Avi; Medvedovic, Mario; Schürer, Stephan C | Nucleic acids research. | 2020 01 08; | 31701147 | |
| The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. | Deutsch, Eric W; Bandeira, Nuno; Sharma, Vagisha; Perez-Riverol, Yasset; Carver, Jeremy J; Kundu, Deepti J; García-Seisdedos, David; Jarnuczak, Andrew F; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; Hermjakob, Henning; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan A | Nucleic acids research. | 2020 Jan 08; | 31686107 | |
| FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. | Clarke, Daniel J B; Wang, Lily; Jones, Alex; Wojciechowicz, Megan L; Torre, Denis; Jagodnik, Kathleen M; Jenkins, Sherry L; McQuilton, Peter; Flamholz, Zachary; Silverstein, Moshe C; Schilder, Brian M; Robasky, Kimberly; Castillo, Claris; Idaszak, Ray; Ahalt, Stanley C; Williams, Jason; Schurer, Stephan; Cooper, Daniel J; de Miranda Azevedo, Ricardo; Klenk, Juergen A; Haendel, Melissa A; Nedzel, Jared; Avillach, Paul; Shimoyama, Mary E; Harris, Rayna M; Gamble, Meredith; Poten, Rudy; Charbonneau, Amanda L; Larkin, Jennie; Brown, C Titus; Bonazzi, Vivien R; Dumontier, Michel J; Sansone, Susanna-Assunta; Ma'ayan, Avi | Cell systems | 2019 11 27 | 31677972 | |
| Identifying biological markers for improved precision medicine in psychiatry. | Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium | Molecular psychiatry. | 2020 Feb; | 31676814 | |
| Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. | Postema, Merel C; van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Filho, Geraldo Busatto; Calderoni, Sara; Calvo, Rosa; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis S; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Fair, Damien; Fedor, Jennifer; Feng, Xin; Fitzgerald, Jackie; Floris, Dorothea L; Freitag, Christine M; Gallagher, Louise; Glahn, David C; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; King, Joseph A; Kong, Xiang Zhen; Lazaro, Luisa; Lerch, Jason P; Luna, Beatriz; Martinho, Mauricio M; McGrath, Jane; Medland, Sarah E; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Puig, Olga; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot J; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Thompson, Paul M; Fisher, Simon E; Buitelaar, Jan K; Francks, Clyde | Nature communications | 2019 10 31 | 31673008 | |
| Risk factors for development of aminoglycoside resistance among gram-negative rods. | Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A | American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists. | 2019 10 30; | 31665763 | |
| Association of Copy Number Variation of the 15q11.2 BP1-BP2 Region With Cortical and Subcortical Morphology and Cognition. | Writing Committee for the ENIGMA-CNV Working Group; van der Meer, Dennis; Sønderby, Ida E; Kaufmann, Tobias; Walters, G Bragi; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Micael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas B; Blangero, John; Boomsma, Dorret I; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Cahn, Wiepke; Calhoun, Vince D; Caspers, Svenja; Cavalleri, Gianpiero L; Ching, Christopher R K; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivieres, Sylvane; Di Forti, Marta; Doherty, Joanne L; Donohoe, Gary; Ehrlich, Stefan; Eising, Else; Espeseth, Thomas; Fisher, Simon E; Fladby, Tormod; Frei, Oleksandr; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans J; Groenewold, Nynke A; Gústafsson, Ómar; Haavik, Jan; Haberg, Asta K; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Hibar, Derrek P; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Ikeda, Masashi; Jacquemont, Sébastien; Jahanshad, Neda; Jockwitz, Christiane; Johansson, Stefan; Jönsson, Erik G; Kikuchi, Masataka; Knowles, Emma E M; Kwok, John B; Le Hellard, Stephanie; Linden, David E J; Liu, Jingyu; Lundervold, Arvid; Lundervold, Astri J; Martin, Nicholas G; Mather, Karen A; Mathias, Samuel R; McMahon, Katie L; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Moreau, Clara; Morris, Derek W; Mühleisen, Thomas W; Murray, Robin M; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel A; Owen, Michael J; Paus, Tomas; Pausova, Zdenka; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Quinlan, Erin Burke; Reinbold, Céline S; Reis Marques, Tiago; Rucker, James J H; Sachdev, Perminder S; Sando, Sigrid B; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Silva, Ana I; Sisodiya, Sanjay M; Steen, Vidar M; Stein, Dan J; Strike, Lachlan T; Tamnes, Christian K; Teumer, Alexander; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; Uhlmann, Anne; Úlfarsson, Magnús Ö; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Wen, Wei; Wittfeld, Katharina; Wright, Margaret J; Zayats, Tetyana; Dale, Anders M; Djurovic, Srdjan; Agartz, Ingrid; Westlye, Lars T; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul M; Andreassen, Ole A | JAMA psychiatry | 2020 04 01 | 31665216 | |
| A Novel Machine Learning Model Developed to Assist in Patient Selection for Outpatient Total Shoulder Arthroplasty. | Biron, Dustin R; Sinha, Ishan; Kleiner, Justin E; Aluthge, Dilum P; Goodman, Avi D; Sarkar, I Neil; Cohen, Eric; Daniels, Alan H | The Journal of the American Academy of Orthopaedic Surgeons. | 2019 Oct 24; | 31663914 | |
| Effects of initial planning on task execution performance of older adults: A naturalistic assessment paradigm. | Brown, Katelyn D; Schmitter-Edgecombe, Maureen | Journal of clinical and experimental neuropsychology | 2020 02 | 31658865 | |
| TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome. | Garlid, Anders O; Schaffer, Calvin T; Kim, Jaewoo; Bhatt, Hirsh; Guevara-Gonzalez, Vladimir; Ping, Peipei | Gene. | 2020 Feb 05; | 31647997 | |
| SMARTS: the social media-based addiction recovery and intervention targeting server. | Jha, Deeptanshu; Singh, Rahul | Bioinformatics (Oxford, England) | 2019 Oct 24 | 31647520 | |
| Behavioral problems in perinatally HIV-infected young children with early antiretroviral therapy and HIV-exposed uninfected young children: prevalence and associated factors. | Jantarabenjakul, Watsamon; Chonchaiya, Weerasak; Puthanakit, Thanyawee; Anugulruengkitt, Suvaporn; Theerawit, Tuangtip; Payapanon, Jesdapron; Sophonphan, Jiratchaya; Veeravigrom, Montida; Jahanshad, Neda; Thompson, Paul M; Ananworanich, Jintanat; Malee, Kathleen; Pancharoen, Chitsanu; DOET study | AIDS care. | 2020 04; | 31635484 | |
| Effects of ketamine and midazolam on resting state connectivity and comparison with ENIGMA connectivity deficit patterns in schizophrenia. | Adhikari, Bhim M; Dukart, Juergen; Hipp, Joerg F; Forsyth, Anna; McMillan, Rebecca; Muthukumaraswamy, Suresh D; Ryan, Meghann C; Hong, L Elliot; Eickhoff, Simon B; Jahandshad, Neda; Thompson, Paul M; Rowland, Laura M; Kochunov, Peter | Human brain mapping. | 2020 Feb 15; | 31633254 | |
| Investigating genetic links between grapheme-colour synaesthesia and neuropsychiatric traits. | Tilot, Amanda K; Vino, Arianna; Kucera, Katerina S; Carmichael, Duncan A; van den Heuvel, Loes; den Hoed, Joery; Sidoroff-Dorso, Anton V; Campbell, Archie; Porteous, David J; St Pourcain, Beate; van Leeuwen, Tessa M; Ward, Jamie; Rouw, Romke; Simner, Julia; Fisher, Simon E | Philosophical transactions of the Royal Society of London. Series B, Biological sciences. | 2019 12 09; | 31630655 | |
| Hierarchical associations of alcohol use disorder symptoms in late adolescence with markers during early adolescence. | Kühn, Simone; Lisofsky, Nina; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Gallinat, Jürgen; IMAGEN Consortium | Addictive behaviors. | 2020 01; | 31622946 | |
| Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. | Hong, Na; Wen, Andrew; Stone, Daniel J; Tsuji, Shintaro; Kingsbury, Paul R; Rasmussen, Luke V; Pacheco, Jennifer A; Adekkanattu, Prakash; Wang, Fei; Luo, Yuan; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian | Journal of biomedical informatics. | 2019 Nov; | 31622801 | |
| Systemic Mitochondrial Oxidative Phosphorylation Protein Levels Correlate with Neuroimaging Measures in Chronically HIV-Infected Individuals. | Kallianpur, Kalpana J; Walker, Maegen; Gerschenson, Mariana; Shikuma, Cecilia M; Gangcuangco, Louie Mar A; Kohorn, Lindsay; Libutti, Daniel E; Nir, Talia M; Jahanshad, Neda; Thompson, Paul M; Paul, Robert | AIDS research and human retroviruses. | 2020 01; | 31617381 | |
| Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia. | Paik, Hyojung; Kan, Matthew J; Rappoport, Nadav; Hadley, Dexter; Sirota, Marina; Chen, Bin; Manber, Udi; Cho, Seong Beom; Butte, Atul J | Scientific data. | 2019 10 15; | 31615985 | |
| An overlapping pattern of cerebral cortical thinning is associated with both positive symptoms and aggression in schizophrenia via the ENIGMA consortium. | Wong, Ting Yat; Radua, Joaquim; Pomarol-Clotet, Edith; Salvador, Raymond; Albajes-Eizagirre, Anton; Solanes, Aleix; Canales-Rodriguez, Erick J; Guerrero-Pedraza, Amalia; Sarro, Salvador; Kircher, Tilo; Nenadic, Igor; Krug, Axel; Grotegerd, Dominik; Dannlowski, Udo; Borgwardt, Stefan; Riecher-Rössler, Anita; Schmidt, Andre; Andreou, Christina; Huber, Christian G; Turner, Jessica; Calhoun, Vince; Jiang, Wenhao; Clark, Sarah; Walton, Esther; Spalletta, Gianfranco; Banaj, Nerisa; Piras, Fabrizio; Ciullo, Valentina; Vecchio, Daniela; Lebedeva, Irina; Tomyshev, Alexander S; Kaleda, Vasily; Klushnik, Tatyana; Filho, Geraldo Busatto; Zanetti, Marcus Vinicius; Serpa, Mauricio Henriques; Penteado Rosa, Pedro Gomes; Hashimoto, Ryota; Fukunaga, Masaki; Richter, Anja; Krämer, Bernd; Gruber, Oliver; Voineskos, Aristotle N; Dickie, Erin W; Tomecek, David; Skoch, Antonin; Spaniel, Filip; Hoschl, Cyril; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Holleran, Laurena; Ciufolini, Simone; Marques, Tiago Reis; Dazzan, Paola; Murray, Robin; Lamsma, Jelle; Cahn, Wiepke; van Haren, Neeltje; Díaz-Zuluaga, Ana M; Pineda-Zapata, Julián A; Vargas, Cristian; López-Jaramillo, Carlos; van Erp, Theo G M; Gur, Ruben C; Nickl-Jockschat, Thomas | Psychological medicine. | 2020 09; | 31615588 | |
| High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. | Liao, Katherine P; Sun, Jiehuan; Cai, Tianrun A; Link, Nicholas; Hong, Chuan; Huang, Jie; Huffman, Jennifer E; Gronsbell, Jessica; Zhang, Yichi; Ho, Yuk-Lam; Castro, Victor; Gainer, Vivian; Murphy, Shawn N; O'Donnell, Christopher J; Gaziano, J Michael; Cho, Kelly; Szolovits, Peter; Kohane, Isaac S; Yu, Sheng; Cai, Tianxi | Journal of the American Medical Informatics Association : JAMIA. | 2019 11 01; | 31613361 | |
| DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark. | Linderman, Michael D; Chia, Davin; Wallace, Forrest; Nothaft, Frank A | BMC bioinformatics. | 2019 Oct 11; | 31604420 | |
| Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways. | Horgusluoglu-Moloch, Emrin; Risacher, Shannon L; Crane, Paul K; Hibar, Derrek; Thompson, Paul M; Saykin, Andrew J; Nho, Kwangsik; Alzheimer?s Disease Neuroimaging Initiative (ADNI) | Scientific reports. | 2019 Oct 10; | 31601890 | |
| Transcriptional regulatory model of fibrosis progression in the human lung. | McDonough, John E; Ahangari, Farida; Li, Qin; Jain, Siddhartha; Verleden, Stijn E; Herazo-Maya, Jose; Vukmirovic, Milica; DeIuliis, Giuseppe; Tzouvelekis, Argyrios; Tanabe, Naoya; Chu, Fanny; Yan, Xiting; Verschakelen, Johny; Homer, Robert J; Manatakis, Dimitris V; Zhang, Junke; Ding, Jun; Maes, Karen; De Sadeleer, Laurens; Vos, Robin; Neyrinck, Arne; Benos, Panayiotis V; Bar-Joseph, Ziv; Tantin, Dean; Hogg, James C; Vanaudenaerde, Bart M; Wuyts, Wim A; Kaminski, Naftali | JCI insight. | 2019 Nov 14; | 31600171 | |
| Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. | Deutsch, Eric W; Lane, Lydie; Overall, Christopher M; Bandeira, Nuno; Baker, Mark S; Pineau, Charles; Moritz, Robert L; Corrales, Fernando; Orchard, Sandra; Van Eyk, Jennifer E; Paik, Young-Ki; Weintraub, Susan T; Vandenbrouck, Yves; Omenn, Gilbert S | Journal of proteome research. | 2019 Dec 06; | 31599596 | |
| An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling. | Hong, Na; Wang, Kui; Wu, Sizhu; Shen, Feichen; Yao, Lixia; Jiang, Guoqian | Journal of healthcare informatics research. | 2019 Sep; | 31598581 | |
| A Logical Model of Homology for Comparative Biology. | Mabee, Paula M; Balhoff, James P; Dahdul, Wasila M; Lapp, Hilmar; Mungall, Christopher J; Vision, Todd J | Systematic biology | 2020 03 01 | 31596473 | |
| Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations. | Ong, Carmichael F; Geijtenbeek, Thomas; Hicks, Jennifer L; Delp, Scott L | PLoS computational biology. | 2019 10; | 31589597 | |
| Noninvasive Detection of Colorectal Carcinomas Using Serum Protein Biomarkers. | Ivancic, Melanie M; Megna, Bryant W; Sverchkov, Yuriy; Craven, Mark; Reichelderfer, Mark; Pickhardt, Perry J; Sussman, Michael R; Kennedy, Gregory D | The Journal of surgical research. | 2020 02; | 31586890 | |
| Medical device surveillance with electronic health records. | Callahan, Alison; Fries, Jason A; Ré, Christopher; Huddleston 3rd, James I; Giori, Nicholas J; Delp, Scott; Shah, Nigam H | NPJ digital medicine. | 2019; | 31583282 | |
| Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. | Ignjatovic, Vera; Geyer, Philipp E; Palaniappan, Krishnan K; Chaaban, Jessica E; Omenn, Gilbert S; Baker, Mark S; Deutsch, Eric W; Schwenk, Jochen M | Journal of proteome research. | 2019 Dec 06; | 31573204 | |
| Sample size considerations for comparing dynamic treatment regimens in a sequential multiple-assignment randomized trial with a continuous longitudinal outcome. | Seewald, Nicholas J; Kidwell, Kelley M; Nahum-Shani, Inbal; Wu, Tianshuang; McKay, James R; Almirall, Daniel | Statistical methods in medical research. | 2019 Oct 01; | 31571526 | |
| Training Complex Models with Multi-Task Weak Supervision. | Ratner, Alexander; Hancock, Braden; Dunnmon, Jared; Sala, Frederic; Pandey, Shreyash; Ré, Christopher | Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence. | 2019 Jan-Feb; | 31565535 | |
| Robot-Enabled Support of Daily Activities in Smart Home Environments. | Wilson, Garrett; Pereyda, Christopher; Raghunath, Nisha; de la Cruz, Gabriel; Goel, Shivam; Nesaei, Sepehr; Minor, Bryan; Schmitter-Edgecombe, Maureen; Taylor, Matthew E; Cook, Diane J | Cognitive systems research. | 2019 May; | 31565029 | |
| Safe Expectations: Current State and Future Directions for Medication Safety in Pregnancy Research. | Wood, Mollie E; Andrade, Susan E; Toh, Sengwee | Clinical therapeutics. | 2019 Sep 25; | 31563392 | |
| Chalcones as a basis for computer-aided drug design: innovative approaches to tackle malaria. | Lima, Marilia Nn; Neves, Bruno J; Cassiano, Gustavo C; Gomes, Marcelo N; Tomaz, Kaira Cp; Ferreira, Leticia T; Tavella, Tatyana A; Calit, Juliana; Bargieri, Daniel Y; Muratov, Eugene N; Costa, Fabio Tm; Andrade, Carolina Horta | Future medicinal chemistry. | 2019 10; | 31556721 | |
| The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data. | Kim, Hosung; Irimia, Andrei; Hobel, Samuel M; Pogosyan, Mher; Tang, Haoteng; Petrosyan, Petros; Blanco, Rita Esquivel Castelo; Duffy, Ben A; Zhao, Lu; Crawford, Karen L; Liew, Sook-Lei; Clark, Kristi; Law, Meng; Mukherjee, Pratik; Manley, Geoffrey T; Van Horn, John D; Toga, Arthur W | Frontiers in neuroinformatics | 2019 | 31555116 | |
| Domain Generalization via Multidomain Discriminant Analysis. | Hu, Shoubo; Zhang, Kun; Chen, Zhitang; Chan, Laiwan | Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. | 2019 Jul; | 31555066 | |
| Learning Disentangled Semantic Representation for Domain Adaptation. | Cai, Ruichu; Li, Zijian; Wei, Pengfei; Qiao, Jie; Zhang, Kun; Hao, Zhifeng | IJCAI : proceedings of the conference. | 2019 Aug; | 31555039 | |
| Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation. | Guerrero, Jose M; Adluru, Nagesh; Bendlin, Barbara B; Goldsmith, H Hill; Schaefer, Stacey M; Davidson, Richard J; Kecskemeti, Steven R; Zhang, Hui; Alexander, Andrew L | PloS one | 2019 | 31553719 | |
| A fast divide-and-conquer sparse Cox regression. | Wang, Yan; Hong, Chuan; Palmer, Nathan; Di, Qian; Schwartz, Joel; Kohane, Isaac; Cai, Tianxi | Biostatistics (Oxford, England) | 2021 Apr 10 | 31545341 | |
| The case for openness in engineering research. | Berg, Devin R; Niemeyer, Kyle E | F1000Research. | 2018; | 31543946 | |
| Evaluating FAIR maturity through a scalable, automated, community-governed framework. | Wilkinson, Mark D; Dumontier, Michel; Sansone, Susanna-Assunta; Bonino da Silva Santos, Luiz Olavo; Prieto, Mario; Batista, Dominique; McQuilton, Peter; Kuhn, Tobias; Rocca-Serra, Philippe; Crosas, Merc?; Schultes, Erik | Scientific data. | 2019 09 20; | 31541130 | |
| Predicting pregnancy using large-scale data from a women's health tracking mobile application. | Liu, Bo; Shi, Shuyang; Wu, Yongshang; Thomas, Daniel; Symul, Laura; Pierson, Emma; Leskovec, Jure | Proceedings of the ... International World-Wide Web Conference. International WWW Conference. | 2019 May; | 31538145 | |
| Inferring Multidimensional Rates of Aging from Cross-Sectional Data. | Pierson, Emma; Koh, Pang Wei; Hashimoto, Tatsunori; Koller, Daphne; Leskovec, Jure; Eriksson, Nicholas; Liang, Percy | Proceedings of machine learning research. | 2019 Apr; | 31538144 | |
| Predicting Dynamic Embedding Trajectory in Temporal Interaction Networks. | Kumar, Srijan; Zhang, Xikun; Leskovec, Jure | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | 2019 Aug; | 31538030 | |
| Amalgamating evidence of dynamics. | Danks, David; Plis, Sergey | Synthese. | 2019 Aug; | 31527987 | |
| Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes. | Xue, Yifan; Cooper, Gregory; Cai, Chunhui; Lu, Songjian; Hu, Baoli; Ma, Xiaojun; Lu, Xinghua | Scientific reports. | 2019 Sep 13; | 31519988 | |
| Multifaceted protein-protein interaction prediction based on Siamese residual RCNN. | Chen, Muhao; Ju, Chelsea J-T; Zhou, Guangyu; Chen, Xuelu; Zhang, Tianran; Chang, Kai-Wei; Zaniolo, Carlo; Wang, Wei | Bioinformatics (Oxford, England). | 2019 07 15; | 31510705 | |
| The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment. | Zhang, Yi; Manjunath, Mohith; Yan, Jialu; Baur, Brittany A; Zhang, Shilu; Roy, Sushmita; Song, Jun S | Frontiers in genetics. | 2019; | 31507631 | |
| Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts. | Tsueng, Ginger; Nanis, Max; Fouquier, Jennifer T; Mayers, Michael; Good, Benjamin M; Su, Andrew I | Bioinformatics (Oxford, England). | 2019 Sep 03; | 31504205 | |
| dbgap2x: an R package to explore and extract data from the database of Genotypes and Phenotypes (dbGaP). | Versmée, Grégoire; Versmée, Laura; Dusenne, Mikaël; Jalali, Niloofar; Avillach, Paul | Bioinformatics (Oxford, England) | 2020 02 15 | 31504194 | |
| Causal Discovery and Forecasting in Nonstationary Environments with State-Space Models. | Huang, Biwei; Zhang, Kun; Gong, Mingming; Glymour, Clark | Proceedings of machine learning research. | 2019 Jun; | 31497778 | |
| Data-Driven Approach to Multiple-Source Domain Adaptation. | Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun | Proceedings of machine learning research. | 2019 Apr; | 31497777 | |
| Low-Dimensional Density Ratio Estimation for Covariate Shift Correction. | Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun | Proceedings of machine learning research. | 2019 Apr; | 31497776 | |
| A privacy-preserving distributed filtering framework for NLP artifacts. | Sadat, Md Nazmus; Aziz, Md Momin Al; Mohammed, Noman; Pakhomov, Serguei; Liu, Hongfang; Jiang, Xiaoqian | BMC medical informatics and decision making. | 2019 Sep 07; | 31493797 | |
| Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics. | Köhler, Sebastian; Øien, N Christine; Buske, Orion J; Groza, Tudor; Jacobsen, Julius O B; McNamara, Craig; Vasilevsky, Nicole; Carmody, Leigh C; Gourdine, J P; Gargano, Michael; McMurry, Julie A; Danis, Daniel; Mungall, Christopher J; Smedley, Damian; Haendel, Melissa; Robinson, Peter N | Current protocols in human genetics. | 2019 Sep; | 31479590 | |
| Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data. | Hicks, Allison L; Wheeler, Nicole; Sánchez-Busó, Leonor; Rakeman, Jennifer L; Harris, Simon R; Grad, Yonatan H | PLoS computational biology. | 2019 09; | 31479500 | |
| A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS. | McMahon, Mary; Contreras, Adrian; Holm, Mikael; Uechi, Tamayo; Forester, Craig M; Pang, Xiaming; Jackson, Cody; Calvert, Meredith E; Chen, Bin; Quigley, David A; Luk, John M; Kelley, R Kate; Gordan, John D; Gill, Ryan M; Blanchard, Scott C; Ruggero, Davide | eLife. | 2019 09 03; | 31478838 | |
| White matter disturbances in major depressive disorder: a coordinated analysis across 20 international cohorts in the ENIGMA MDD working group. | van Velzen, Laura S; Kelly, Sinead; Isaev, Dmitry; Aleman, Andre; Aftanas, Lyubomir I; Bauer, Jochen; Baune, Bernhard T; Brak, Ivan V; Carballedo, Angela; Connolly, Colm G; Couvy-Duchesne, Baptiste; Cullen, Kathryn R; Danilenko, Konstantin V; Dannlowski, Udo; Enneking, Verena; Filimonova, Elena; Förster, Katharina; Frodl, Thomas; Gotlib, Ian H; Groenewold, Nynke A; Grotegerd, Dominik; Harris, Mathew A; Hatton, Sean N; Hawkins, Emma L; Hickie, Ian B; Ho, Tiffany C; Jansen, Andreas; Kircher, Tilo; Klimes-Dougan, Bonnie; Kochunov, Peter; Krug, Axel; Lagopoulos, Jim; Lee, Renick; Lett, Tristram A; Li, Meng; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; McLellan, Quinn; Meinert, Susanne; Nenadi?, Igor; Osipov, Evgeny; Penninx, Brenda W J H; Portella, Maria J; Repple, Jonathan; Roos, Annerine; Sacchet, Matthew D; Sämann, Philipp G; Schnell, Knut; Shen, Xueyi; Sim, Kang; Stein, Dan J; van Tol, Marie-Jose; Tomyshev, Alexander S; Tozzi, Leonardo; Veer, Ilya M; Vermeiren, Robert; Vives-Gilabert, Yolanda; Walter, Henrik; Walter, Martin; van der Wee, Nic J A; van der Werff, Steven J A; Schreiner, Melinda Westlund; Whalley, Heather C; Wright, Margaret J; Yang, Tony T; Zhu, Alyssa; Veltman, Dick J; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne | Molecular psychiatry. | 2019 Aug 30; | 31471575 | |
| Functional Brain Hyperactivations Are Linked to an Electrophysiological Measure of Slow Interhemispheric Transfer Time after Pediatric Moderate/Severe Traumatic Brain Injury. | Olsen, Alexander; Babikian, Talin; Dennis, Emily L; Ellis-Blied, Monica U; Giza, Christopher; Marion, Sarah DeBoard; Mink, Richard; Johnson, Jeffrey; Babbitt, Christopher J; Thompson, Paul M; Asarnow, Robert F | Journal of neurotrauma. | 2020 Jan 15; | 31469049 | |
| Practical Considerations for Data Collection and Management in Mobile Health Micro-randomized Trials. | Seewald, Nicholas J; Smith, Shawna N; Lee, Andy Jinseok; Klasnja, Predrag; Murphy, Susan A | Statistics in biosciences. | 2019 Jul; | 31462937 | |
| Genomic GPS: using genetic distance from individuals to public data for genomic analysis without disclosing personal genomes. | Kim, Kunhee; Baik, Hyungryul; Jang, Chloe Soohyun; Roh, Jin Kyung; Eskin, Eleazer; Han, Buhm | Genome biology | 2019 08 27 | 31455387 | |
| Learning High-dimensional Directed Acyclic Graphs with Mixed Data-types. | Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F | Proceedings of machine learning research. | 2019 Aug; | 31453569 | |
| Inverse probability weighted Cox model in multi-site studies without sharing individual-level data. | Shu, Di; Yoshida, Kazuki; Fireman, Bruce H; Toh, Sengwee | Statistical methods in medical research. | 2019 Aug 26; | 31448681 | |
| The Association Between Familial Risk and Brain Abnormalities Is Disease Specific: An ENIGMA-Relatives Study of Schizophrenia and Bipolar Disorder. | de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Aleman, André; Alpert, Kathryn I; Bearden, Carrie E; Bertolino, Alessandro; Bois, Catherine; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Frankland, Andrew; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; de Haan, Lieuwe; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hillegers, Manon H J; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krabbendam, Lydia; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Marsman, Jan-Bernard C; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Najt, Pablo; Neilson, Emma; Newport, Jason; van Os, Jim; Overs, Bronwyn; Ozerdem, Aysegul; Picchioni, Marco M; Richter, Anja; Roberts, Gloria; Aydogan, Aybala Saricicek; Schofield, Peter R; Simsek, Fatma; Soares, Jair C; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Walter, Henrik; Wang, Lei; Weinberger, Daniel R; Whalley, Heather C; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; van Erp, Theo G M; Turner, Jessica A; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E M | Biological psychiatry. | 2019 10 01; | 31443932 | |
| Context-Aware Delivery of Ecological Momentary Assessment. | Aminikhanghahi, Samaneh; Schmitter-Edgecombe, Maureen; Cook, Diane J | IEEE journal of biomedical and health informatics | 2020 04 | 31443058 | |
| Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. | Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen; Snyder, Michael P; Baker, Mark S; Deutsch, Eric W | Journal of proteome research. | 2019 Dec 06; | 31430157 | |
| APOE?4 Gene Dose and Sex Effects on Alzheimer's Disease MRI Biomarkers in Older Adults with Mild Cognitive Impairment. | Hobel, Zachary; Isenberg, A Lisette; Raghupathy, Dhvani; Mack, Wendy; Pa, Judy; Alzheimer?s Disease Neuroimaging Initiative and the Australian Imaging Biomarkers and Lifestyle flagship study of ageing | Journal of Alzheimer's disease : JAD. | 2019; | 31424388 | |
| Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis. | Zheng, Zihao; Mergaert, Aisha M; Fahmy, Lauren M; Bawadekar, Mandar; Holmes, Caitlyn L; Ong, Irene M; Bridges, Alan J; Newton, Michael A; Shelef, Miriam A | Arthritis & rheumatology (Hoboken, N.J.). | 2019 Aug 08; | 31397047 | |
| Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types. | Yu, K; Chen, B; Aran, D; Charalel, J; Yau, C; Wolf, D M; van 't Veer, L J; Butte, A J; Goldstein, T; Sirota, M | Nature communications. | 2019 Aug 08; | 31395879 | |
| Architecture and usability of OntoKeeper, an ontology evaluation tool. | Amith, Muhammad; Manion, Frank; Liang, Chen; Harris, Marcelline; Wang, Dennis; He, Yongqun; Tao, Cui | BMC medical informatics and decision making. | 2019 08 08; | 31391056 | |
| Quantifying the impact of public omics data. | Perez-Riverol, Yasset; Zorin, Andrey; Dass, Gaurhari; Vu, Manh-Tu; Xu, Pan; Glont, Mihai; Vizcaíno, Juan Antonio; Jarnuczak, Andrew F; Petryszak, Robert; Ping, Peipei; Hermjakob, Henning | Nature communications. | 2019 Aug 05; | 31383865 | |
| Predicting kinase inhibitors using bioactivity matrix derived informer sets. | Zhang, Huikun; Ericksen, Spencer S; Lee, Ching-Pei; Ananiev, Gene E; Wlodarchak, Nathan; Yu, Peng; Mitchell, Julie C; Gitter, Anthony; Wright, Stephen J; Hoffmann, F Michael; Wildman, Scott A; Newton, Michael A | PLoS computational biology. | 2019 08; | 31381559 | |
| Sequence tube maps: making graph genomes intuitive to commuters. | Beyer, Wolfgang; Novak, Adam M; Hickey, Glenn; Chan, Jeffrey; Tan, Vanessa; Paten, Benedict; Zerbino, Daniel R | Bioinformatics (Oxford, England). | 2019 Dec 15; | 31368484 | |
| PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. | Sánchez, Luis Francisco Hernández; Burger, Bram; Horro, Carlos; Fabregat, Antonio; Johansson, Stefan; Njølstad, Pål Rasmus; Barsnes, Harald; Hermjakob, Henning; Vaudel, Marc | GigaScience. | 2019 08 01; | 31363752 | |
| Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements. | Tsueng, Ginger; Kumar, Arun; Nanis, Steven M; Su, Andrew I | Human computation (Fairfax, Va.). | 2019; | 31363486 | |
| New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders. | Evangelou, Evangelos; Gao, He; Chu, Congying; Ntritsos, Georgios; Blakeley, Paul; Butts, Andrew R; Pazoki, Raha; Suzuki, Hideaki; Koskeridis, Fotios; Yiorkas, Andrianos M; Karaman, Ibrahim; Elliott, Joshua; Luo, Qiang; Aeschbacher, Stefanie; Bartz, Traci M; Baumeister, Sebastian E; Braund, Peter S; Brown, Michael R; Brody, Jennifer A; Clarke, Toni-Kim; Dimou, Niki; Faul, Jessica D; Homuth, Georg; Jackson, Anne U; Kentistou, Katherine A; Joshi, Peter K; Lemaitre, Rozenn N; Lind, Penelope A; Lyytikäinen, Leo-Pekka; Mangino, Massimo; Milaneschi, Yuri; Nelson, Christopher P; Nolte, Ilja M; Perälä, Mia-Maria; Polasek, Ozren; Porteous, David; Ratliff, Scott M; Smith, Jennifer A; Stan?áková, Alena; Teumer, Alexander; Tuominen, Samuli; Thériault, Sébastien; Vangipurapu, Jagadish; Whitfield, John B; Wood, Alexis; Yao, Jie; Yu, Bing; Zhao, Wei; Arking, Dan E; Auvinen, Juha; Liu, Chunyu; Männikkö, Minna; Risch, Lorenz; Rotter, Jerome I; Snieder, Harold; Veijola, Juha; Blakemore, Alexandra I; Boehnke, Michael; Campbell, Harry; Conen, David; Eriksson, Johan G; Grabe, Hans J; Guo, Xiuqing; van der Harst, Pim; Hartman, Catharina A; Hayward, Caroline; Heath, Andrew C; Jarvelin, Marjo-Riitta; Kähönen, Mika; Kardia, Sharon L R; Kühne, Michael; Kuusisto, Johanna; Laakso, Markku; Lahti, Jari; Lehtimäki, Terho; McIntosh, Andrew M; Mohlke, Karen L; Morrison, Alanna C; Martin, Nicholas G; Oldehinkel, Albertine J; Penninx, Brenda W J H; Psaty, Bruce M; Raitakari, Olli T; Rudan, Igor; Samani, Nilesh J; Scott, Laura J; Spector, Tim D; Verweij, Niek; Weir, David R; Wilson, James F; Levy, Daniel; Tzoulaki, Ioanna; Bell, Jimmy D; Matthews, Paul M; Rothenfluh, Adrian; Desrivières, Sylvane; Schumann, Gunter; Elliott, Paul | Nature human behaviour. | 2019 09; | 31358974 | |
| Altered white matter microstructure in 22q11.2 deletion syndrome: a multisite diffusion tensor imaging study. | Villalón-Reina, Julio E; Martínez, Kenia; Qu, Xiaoping; Ching, Christopher R K; Nir, Talia M; Kothapalli, Deydeep; Corbin, Conor; Sun, Daqiang; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Emanuel, Beverly; McDonald-McGinn, Donna M; Vorstman, Jacob A S; Fiksinski, Ania M; Koops, Sanne; Ruparel, Kosha; Roalf, David; Gur, Raquel E; Eric Schmitt, J; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Doherty, Joanne L; Cunningham, Adam C; van den Bree, Marianne; Linden, David E J; Owen, Michael; Moss, Hayley; Kelly, Sinead; Donohoe, Gary; Murphy, Kieran C; Arango, Celso; Jahanshad, Neda; Thompson, Paul M; Bearden, Carrie E | Molecular psychiatry. | 2019 Jul 29; | 31358905 | |
| ROBOT: A Tool for Automating Ontology Workflows. | Jackson, Rebecca C; Balhoff, James P; Douglass, Eric; Harris, Nomi L; Mungall, Christopher J; Overton, James A | BMC bioinformatics. | 2019 Jul 29; | 31357927 | |
| Temporal Poisson Square Root Graphical Models. | Geng, Sinong; Kuang, Zhaobin; Peissig, Peggy; Page, David | Proceedings of machine learning research. | 2018 Jul; | 31355361 | |
| Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases. | O'Banion, Colin P; Vickerman, Brianna M; Haar, Lauren; Lawrence, David S | Cell chemical biology. | 2019 Oct 17; | 31353320 | |
| No Alterations of Brain Structural Asymmetry in Major Depressive Disorder: An ENIGMA Consortium Analysis. | de Kovel, Carolien G F; Aftanas, Lyubomir; Aleman, André; Alexander-Bloch, Aaron F; Baune, Bernhard T; Brack, Ivan; Bülow, Robin; Busatto Filho, Geraldo; Carballedo, Angela; Connolly, Colm G; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Dohm, Katharina; Erwin-Grabner, Tracy; Frodl, Thomas; Fu, Cynthia H Y; Hall, Geoffrey B; Glahn, David C; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans Jörgen; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Harris, Mathew A; Harrison, Ben J; Hatton, Sean N; Hickie, Ian B; Ho, Tiffany C; Jahanshad, Neda; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leehr, Elisabeth J; Li, Meng; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew M; McLellan, Quinn; Medland, Sarah E; Mueller, Bryon A; Nenadic, Igor; Osipov, Evgeny; Papmeyer, Martina; Portella, Maria J; Reneman, Liesbeth; Rosa, Pedro G P; Sacchet, Matthew D; Schnell, Knut; Schrantee, Anouk; Sim, Kang; Simulionyte, Egle; Sindermann, Lisa; Singh, Aditya; Stein, Dan J; Ubani, Benjamin N; Van der Wee, Nic J A; Van der Werff, Steven J A; Veer, Ilya M; Vives-Gilabert, Yolanda; Völzke, Henry; Walter, Henrik; Walter, Martin; Schreiner, Melinda Westlund; Whalley, Heather; Winter, Nils; Wittfeld, Katharina; Yang, Tony T; Yüksel, Dilara; Zaremba, Dario; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Francks, Clyde | The American journal of psychiatry. | 2019 12 01; | 31352813 | |
| White Matter in Schizophrenia Treatment Resistance. | Kochunov, Peter; Huang, Junchao; Chen, Song; Li, Yanli; Tan, Shuping; Fan, Fengmei; Feng, Wei; Wang, Yunhui; Rowland, Laura M; Savransky, Anya; Du, Xiaoming; Chiappelli, Joshua; Chen, Shuo; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Adhikari, Bhim; Sampath, Hemalatha; Cui, Yimin; Wang, Zhiren; Yang, Fude; Tan, Yunlong; Hong, L Elliot | The American journal of psychiatry. | 2019 10 01; | 31352812 | |
| We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts? | Wheeler, Nicole | Thorax. | 2019 Sep; | 31331948 | |
| iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. | Rojo, Constanza; Zhang, Qi; Kele?, Sündüz | Genetic epidemiology. | 2019 10; | 31328826 | |
| Heavy drinking in adolescents is associated with change in brainstem microstructure and reward sensitivity. | Galinowski, André; Miranda, Ruben; Lemaitre, Hervé; Artiges, Eric; Paillère Martinot, Marie-Laure; Filippi, Irina; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Stringaris, Argyris; Becker, Andreas; Isensee, Corinna; Struve, Maren; Fadai, Tahmine; Kappel, Viola; Goodman, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gallinat, Juergen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hohmann, Sarah; Jurk, Sarah; Millenet, Sabina; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Poustka, Luise; Quinlan, Erin Burke; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; IMAGEN Consortium | Addiction biology. | 2020 May; | 31328396 | |
| Cannabis-Associated Psychotic-like Experiences Are Mediated by Developmental Changes in the Parahippocampal Gyrus. | Yu, Tao; Jia, Tianye; Zhu, Liping; Desrivières, Sylvane; Macare, Christine; Bi, Yan; Bokde, Arun L W; Quinlan, Erin Burke; Heinz, Andreas; Ittermann, Bernd; Liu, ChuanXin; Ji, Lei; Banaschewski, Tobias; Ren, Decheng; Du, Li; Hou, Binyin; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Luo, Qiang; Chu, Congying; Paus, Tomas; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Smolka, Michael N; Vetter, Nora C; Mennigen, Eva; Lei, Cai; Walter, Henrik; Fröhner, Juliane H; Whelan, Robert; He, Guang; He, Lin; Schumann, Gunter; Robert, Gabriel; IMAGEN Consortium | Journal of the American Academy of Child and Adolescent Psychiatry | 2020 05 | 31326579 | |
| Fast Causal Inference with Non-Random Missingness by Test-Wise Deletion. | Strobl, Eric V; Visweswaran, Shyam; Spirtes, Peter L | International journal of data science and analytics. | 2018 Aug; | 31321289 | |
| Functional network connectivity impairments and core cognitive deficits in schizophrenia. | Adhikari, Bhim M; Hong, L Elliot; Sampath, Hemalatha; Chiappelli, Joshua; Jahanshad, Neda; Thompson, Paul M; Rowland, Laura M; Calhoun, Vince D; Du, Xiaoming; Chen, Shuo; Kochunov, Peter | Human brain mapping. | 2019 11 01; | 31313441 | |
| Irritability and brain volume in adolescents: cross-sectional and longitudinal associations. | Dennis, Emily L; Humphreys, Kathryn L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H | Social cognitive and affective neuroscience. | 2019 07 31; | 31309969 | |
| Weakly supervised classification of aortic valve malformations using unlabeled cardiac MRI sequences. | Fries, Jason A; Varma, Paroma; Chen, Vincent S; Xiao, Ke; Tejeda, Heliodoro; Saha, Priyanka; Dunnmon, Jared; Chubb, Henry; Maskatia, Shiraz; Fiterau, Madalina; Delp, Scott; Ashley, Euan; Ré, Christopher; Priest, James R | Nature communications. | 2019 Jul 15; | 31308376 | |
| Best practices for analyzing large-scale health data from wearables and smartphone apps. | Hicks, Jennifer L; Althoff, Tim; Sosic, Rok; Kuhar, Peter; Bostjancic, Bojan; King, Abby C; Leskovec, Jure; Delp, Scott L | NPJ digital medicine. | 2019; | 31304391 | |
| Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants. | Cline, Melissa S; Babbi, Giulia; Bonache, Sandra; Cao, Yue; Casadio, Rita; de la Cruz, Xavier; Díez, Orland; Gutiérrez-Enríquez, Sara; Katsonis, Panagiotis; Lai, Carmen; Lichtarge, Olivier; Martelli, Pier L; Mishne, Gilad; Moles-Fernández, Alejandro; Montalban, Gemma; Mooney, Sean D; O'Conner, Robert; Ootes, Lars; Özkan, Selen; Padilla, Natalia; Pagel, Kymberleigh A; Pejaver, Vikas; Radivojac, Predrag; Riera, Casandra; Savojardo, Castrense; Shen, Yang; Sun, Yuanfei; Topper, Scott; Parsons, Michael T; Spurdle, Amanda B; Goldgar, David E; ENIGMA Consortium | Human mutation. | 2019 Sep; | 31294896 | |
| Single Nucleotide Polymorphisms at a Distance from Aryl Hydrocarbon Receptor (AHR) Binding Sites Influence AHR Ligand-Dependent Gene Expression. | Neavin, Drew R; Lee, Jeong-Heon; Liu, Duan; Ye, Zhenqing; Li, Hu; Wang, Liewei; Ordog, Tamas; Weinshilboum, Richard M | Drug metabolism and disposition: the biological fate of chemicals. | 2019 09; | 31292129 | |
| PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. | Shteynberg, David D; Deutsch, Eric W; Campbell, David S; Hoopmann, Michael R; Kusebauch, Ulrike; Lee, Dave; Mendoza, Luis; Midha, Mukul Kumar; Sun, Zhi; Whetton, Anthony D; Moritz, Robert L | Journal of proteome research. | 2019 Jul 10; | 31290668 | |
| Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. | Cai, Chunhui; Cooper, Gregory F; Lu, Kevin N; Ma, Xiaojun; Xu, Shuping; Zhao, Zhenlong; Chen, Xueer; Xue, Yifan; Lee, Adrian V; Clark, Nathan; Chen, Vicky; Lu, Songjian; Chen, Lujia; Yu, Liyue; Hochheiser, Harry S; Jiang, Xia; Wang, Q Jane; Lu, Xinghua | PLoS computational biology. | 2019 07; | 31276486 | |
| Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients. | Bhattacharyya, Sudeepa; Ahmed, Ahmed T; Arnold, Matthias; Liu, Duan; Luo, Chunqiao; Zhu, Hongjie; Mahmoudiandehkordi, Siamak; Neavin, Drew; Louie, Gregory; Dunlop, Boadie W; Frye, Mark A; Wang, Liewei; Weinshilboum, Richard M; Krishnan, Ranga R; Rush, A John; Kaddurah-Daouk, Rima | Translational psychiatry. | 2019 Jul 04; | 31273200 | |
| Reporting and connecting cell type names and gating definitions through ontologies. | Overton, James A; Vita, Randi; Dunn, Patrick; Burel, Julie G; Bukhari, Syed Ahmad Chan; Cheung, Kei-Hoi; Kleinstein, Steven H; Diehl, Alexander D; Peters, Bjoern | BMC bioinformatics | 2019 Apr 25 | 31272390 | |
| OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. | He, Yongqun; Duncan, William D; Cooper, Daniel J; Hansen, Jens; Iyengar, Ravi; Ong, Edison; Walker, Kendal; Tibi, Omar; Smith, Sam; Serra, Lucas M; Zheng, Jie; Sarntivijai, Sirarat; Schürer, Stephan; O'Shea, K Sue; Diehl, Alexander D | BMC bioinformatics. | 2019 Apr 25; | 31272389 | |
| The joint effect of aging and HIV infection on microstructure of white matter bundles. | Kuhn, Taylor; Jin, Yan; Huang, Chao; Kim, Yeun; Nir, Talia M; Gullett, Joseph M; Jones, Jacob D; Sayegh, Phillip; Chung, Caroline; Dang, Bianca H; Singer, Elyse J; Shattuck, David W; Jahanshad, Neda; Bookheimer, Susan Y; Hinkin, Charles H; Zhu, Hongtu; Thompson, Paul M; Thames, April D | Human brain mapping. | 2019 10 15; | 31271489 | |
| Altered Cortical Brain Structure and Increased Risk for Disease Seen Decades After Perinatal Exposure to Maternal Smoking: A Study of 9000 Adults in the UK Biobank. | Salminen, Lauren E; Wilcox, Rand R; Zhu, Alyssa H; Riedel, Brandalyn C; Ching, Christopher R K; Rashid, Faisal; Thomopoulos, Sophia I; Saremi, Arvin; Harrison, Marc B; Ragothaman, Anjanibhargavi; Knight, Victoria; Boyle, Christina P; Medland, Sarah E; Thompson, Paul M; Jahanshad, Neda | Cerebral cortex (New York, N.Y. : 1991). | 2019 Jul 04; | 31271414 | |
| Predicting development of adolescent drinking behaviour from whole brain structure at 14 years of age. | Kühn, Simone; Mascharek, Anna; Banaschewski, Tobias; Bodke, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivieres, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomas; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Lindenberger, Ulman; Gallinat, Jürgen; IMAGEN Consortium | eLife. | 2019 Jul 02; | 31262402 | |
| Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results. | Martínez-Bartolomé, Salvador; Bamberger, Tom Casimir; Lavallée-Adam, Mathieu; McClatchy, Daniel B; Yates 3rd, John R | Journal of proteome research. | 2019 08 02; | 31260318 | |
| Machine Learning Assisted Discovery of Novel Predictive Lab Tests Using Electronic Health Record Data. | Kleiman, Ross; Kuusisto, Finn; Ross, Ian; Peissig, Peggy L; Stewart, Ron; Page, C David; Weiss, Jeremy | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2019; | 31259012 | |
| Privacy-Preserving Collaborative Prediction using Random Forests. | Giacomelli, Irene; Jha, Somesh; Kleiman, Ross; Page, David; Yoon, Kyonghwan | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2019; | 31258977 | |
| A model for initiating research data management services at academic libraries. | Read, Kevin B; Koos, Jessica; Miller, Rebekah S; Miller, Cathryn F; Phillips, Gesina A; Scheinfeld, Laurel; Surkis, Alisa | Journal of the Medical Library Association : JMLA. | 2019 Jul; | 31258450 | |
| Cheminformatics-driven discovery of polymeric micelle formulations for poorly soluble drugs. | Alves, Vinicius M; Hwang, Duhyeong; Muratov, Eugene; Sokolsky-Papkov, Marina; Varlamova, Ekaterina; Vinod, Natasha; Lim, Chaemin; Andrade, Carolina H; Tropsha, Alexander; Kabanov, Alexander | Science advances. | 2019 06; | 31249867 | |
| Pathway-level information extractor (PLIER) for gene expression data. | Mao, Weiguang; Zaslavsky, Elena; Hartmann, Boris M; Sealfon, Stuart C; Chikina, Maria | Nature methods. | 2019 07; | 31249421 | |
| Augmenting subnetwork inference with information extracted from the scientific literature. | Kiblawi, Sid; Chasman, Deborah; Henning, Amanda; Park, Eunju; Poon, Hoifung; Gould, Michael; Ahlquist, Paul; Craven, Mark | PLoS computational biology. | 2019 Jun; | 31246951 | |
| Machine learning techniques for personalized breast cancer risk prediction: comparison with the BCRAT and BOADICEA models. | Ming, Chang; Viassolo, Valeria; Probst-Hensch, Nicole; Chappuis, Pierre O; Dinov, Ivo D; Katapodi, Maria C | Breast cancer research : BCR. | 2019 06 20; | 31221197 | |
| Review of Causal Discovery Methods Based on Graphical Models. | Glymour, Clark; Zhang, Kun; Spirtes, Peter | Frontiers in genetics. | 2019; | 31214249 | |
| Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. | Martínez-Romero, Marcos; O'Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Hardi, Josef; Graybeal, John; Musen, Mark A | Database : the journal of biological databases and curation. | 2019 01 01; | 31210270 | |
| Inferring causation from time series in Earth system sciences. | Runge, Jakob; Bathiany, Sebastian; Bollt, Erik; Camps-Valls, Gustau; Coumou, Dim; Deyle, Ethan; Glymour, Clark; Kretschmer, Marlene; Mahecha, Miguel D; Muñoz-Marí, Jordi; van Nes, Egbert H; Peters, Jonas; Quax, Rick; Reichstein, Markus; Scheffer, Marten; Schölkopf, Bernhard; Spirtes, Peter; Sugihara, George; Sun, Jie; Zhang, Kun; Zscheischler, Jakob | Nature communications. | 2019 Jun 14; | 31201306 | |
| Accelerated Stochastic Power Iteration. | De Sa, Christopher; He, Bryan; Mitliagkas, Ioannis; Ré, Christopher; Xu, Peng | Proceedings of machine learning research. | 2018; | 31187095 | |
| Age-based versus Risk-based Mammography Screening in Women 40-49 Years Old: A Cross-sectional Study. | Burnside, Elizabeth S; Trentham-Dietz, Amy; Shafer, Christina M; Hampton, John M; Alagoz, Oguz; Cox, Jennifer R; Mischo, Eric; Schrager, Sarina B; Wilke, Lee G | Radiology. | 2019 Aug; | 31184557 | |
| Quantifying performance of machine learning methods for neuroimaging data. | Jollans, Lee; Boyle, Rory; Artiges, Eric; Banaschewski, Tobias; Desrivières, Sylvane; Grigis, Antoine; Martinot, Jean-Luc; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Whelan, Robert | NeuroImage. | 2019 Oct 01; | 31173905 | |
| Rapid energy expenditure estimation for ankle assisted and inclined loaded walking. | Slade, Patrick; Troutman, Rachel; Kochenderfer, Mykel J; Collins, Steven H; Delp, Scott L | Journal of neuroengineering and rehabilitation. | 2019 Jun 06; | 31171003 | |
| De novo protein design by citizen scientists. | Koepnick, Brian; Flatten, Jeff; Husain, Tamir; Ford, Alex; Silva, Daniel-Adriano; Bick, Matthew J; Bauer, Aaron; Liu, Gaohua; Ishida, Yojiro; Boykov, Alexander; Estep, Roger D; Kleinfelter, Susan; Nørgård-Solano, Toke; Wei, Linda; Players, Foldit; Montelione, Gaetano T; DiMaio, Frank; Popovi?, Zoran; Khatib, Firas; Cooper, Seth; Baker, David | Nature. | 2019 Jun; | 31168091 | |
| Haplotype-aware diplotyping from noisy long reads. | Ebler, Jana; Haukness, Marina; Pesout, Trevor; Marschall, Tobias; Paten, Benedict | Genome biology. | 2019 06 03; | 31159868 | |
| Optogenetic perturbation of the biochemical pathways that control cell behavior. | Haar, Lauren L; Lawrence, David S; Hughes, Robert M | Methods in enzymology. | 2019; | 31155059 | |
| Multi-Site Meta-Analysis of Morphometry. | Jahanshad, Neda; Faskowitz, Joshua; Roshchupkin, Gennady; Hibar, Derrek P; Gutman, Boris A; Tustison, Nicholas J; Adams, Hieab H H; Niessen, Wiro J; Vernooij, Meike W; Ikram, M Arfan; Zwiers, Marcel P; Vasquez, Alejandro Arias; Franke, Barbara; Kroll, Jennifer L; Mwangi, Benson; Soares, Jair C; Ing, Alex; Desrivieres, Sylvane; Schumann, Gunter; Hansell, Narelle K; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M | IEEE/ACM transactions on computational biology and bioinformatics. | 2019 Sep-Oct; | 31135366 | |
| 10Kin1day: A Bottom-Up Neuroimaging Initiative. | van den Heuvel, Martijn P; Scholtens, Lianne H; van der Burgh, Hannelore K; Agosta, Federica; Alloza, Clara; Arango, Celso; Auyeung, Bonnie; Baron-Cohen, Simon; Basaia, Silvia; Benders, Manon J N L; Beyer, Frauke; Booij, Linda; Braun, Kees P J; Filho, Geraldo Busatto; Cahn, Wiepke; Cannon, Dara M; Chaim-Avancini, Tiffany M; Chan, Sandra S M; Chen, Eric Y H; Crespo-Facorro, Benedicto; Crone, Eveline A; Dannlowski, Udo; de Zwarte, Sonja M C; Dietsche, Bruno; Donohoe, Gary; Plessis, Stefan Du; Durston, Sarah; Díaz-Caneja, Covadonga M; Díaz-Zuluaga, Ana M; Emsley, Robin; Filippi, Massimo; Frodl, Thomas; Gorges, Martin; Graff, Beata; Grotegerd, Dominik; G?secki, Dariusz; Hall, Julie M; Holleran, Laurena; Holt, Rosemary; Hopman, Helene J; Jansen, Andreas; Janssen, Joost; Jodzio, Krzysztof; Jäncke, Lutz; Kaleda, Vasiliy G; Kassubek, Jan; Masouleh, Shahrzad Kharabian; Kircher, Tilo; Koevoets, Martijn G J C; Kostic, Vladimir S; Krug, Axel; Lawrie, Stephen M; Lebedeva, Irina S; Lee, Edwin H M; Lett, Tristram A; Lewis, Simon J G; Liem, Franziskus; Lombardo, Michael V; Lopez-Jaramillo, Carlos; Margulies, Daniel S; Markett, Sebastian; Marques, Paulo; Martínez-Zalacaín, Ignacio; McDonald, Colm; McIntosh, Andrew M; McPhilemy, Genevieve; Meinert, Susanne L; Menchón, José M; Montag, Christian; Moreira, Pedro S; Morgado, Pedro; Mothersill, David O; Mérillat, Susan; Müller, Hans-Peter; Nabulsi, Leila; Najt, Pablo; Narkiewicz, Krzysztof; Naumczyk, Patrycja; Oranje, Bob; Ortiz-Garcia de la Foz, Victor; Peper, Jiska S; Pineda, Julian A; Rasser, Paul E; Redlich, Ronny; Repple, Jonathan; Reuter, Martin; Rosa, Pedro G P; Ruigrok, Amber N V; Sabisz, Agnieszka; Schall, Ulrich; Seedat, Soraya; Serpa, Mauricio H; Skouras, Stavros; Soriano-Mas, Carles; Sousa, Nuno; Szurowska, Edyta; Tomyshev, Alexander S; Tordesillas-Gutierrez, Diana; Valk, Sofie L; van den Berg, Leonard H; van Erp, Theo G M; van Haren, Neeltje E M; van Leeuwen, Judith M C; Villringer, Arno; Vinkers, Christiaan H; Vollmar, Christian; Waller, Lea; Walter, Henrik; Whalley, Heather C; Witkowska, Marta; Witte, A Veronica; Zanetti, Marcus V; Zhang, Rui; de Lange, Siemon C | Frontiers in neurology. | 2019; | 31133958 | |
| Exploring the Utility of Developer Exhaust. | Zhang, Jian; Lam, Max; Wang, Stephanie; Varma, Paroma; Nardi, Luigi; Olukotun, Kunle; Ré, Christopher | Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). | 2018 Jun; | 31131381 | |
| Representation Tradeoffs for Hyperbolic Embeddings. | De Sa, Christopher; Gu, Albert; Ré, Christopher; Sala, Frederic | Proceedings of machine learning research. | 2018; | 31131375 | |
| A two-pronged progress in structured dense matrixvector multiplication. | De Sa, Christopher; Gu, Albert; Puttagunta, Rohan; Ré, Christopher; Rudra, Atri | Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. | 2018 Jan; | 31130802 | |
| Learning Compressed Transforms with Low Displacement Rank. | Thomas, Anna T; Gu, Albert; Dao, Tri; Rudra, Atri; Ré, Christopher | Advances in neural information processing systems. | 2018 Dec; | 31130799 | |
| Training Classifiers with Natural Language Explanations. | Hancock, Braden; Bringmann, Martin; Varma, Paroma; Liang, Percy; Wang, Stephanie; Ré, Christopher | Proceedings of the conference. Association for Computational Linguistics. Meeting. | 2018 Jul; | 31130772 | |
| Design, construction, and validation of optogenetic proteins. | O'Banion, Colin P; Goswami, Anwesha; Lawrence, David S | Methods in enzymology. | 2019; | 31128778 | |
| The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services. | Avesani, Paolo; McPherson, Brent; Hayashi, Soichi; Caiafa, Cesar F; Henschel, Robert; Garyfallidis, Eleftherios; Kitchell, Lindsey; Bullock, Daniel; Patterson, Andrew; Olivetti, Emanuele; Sporns, Olaf; Saykin, Andrew J; Wang, Lei; Dinov, Ivo; Hancock, David; Caron, Bradley; Qian, Yiming; Pestilli, Franco | Scientific data. | 2019 May 23; | 31123325 | |
| Neural Correlates of Failed Inhibitory Control as an Early Marker of Disordered Eating in Adolescents. | Bartholdy, Savani; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike; IMAGEN Consortium | Biological psychiatry. | 2019 06 01; | 31122340 | |
| ChEA3: transcription factor enrichment analysis by orthogonal omics integration. | Keenan, Alexandra B; Torre, Denis; Lachmann, Alexander; Leong, Ariel K; Wojciechowicz, Megan L; Utti, Vivian; Jagodnik, Kathleen M; Kropiwnicki, Eryk; Wang, Zichen; Ma'ayan, Avi | Nucleic acids research. | 2019 Jul 02; | 31114921 | |
| Identifying the molecular and cellular signature of cardiac dilation following myocardial infarction. | Lindsey, Merry L; Ma, Yonggang; Flynn, Elizabeth R; Winniford, Michael D; Hall, Michael E; DeLeon-Pennell, Kristine Y | Biochimica et biophysica acta. Molecular basis of disease. | 2019 Jul 01; | 31109452 | |
| Automated Phrase Mining from Massive Text Corpora. | Shang, Jingbo; Liu, Jialu; Jiang, Meng; Ren, Xiang; Voss, Clare R; Han, Jiawei | IEEE transactions on knowledge and data engineering. | 2018 Oct; | 31105412 | |
| Exercise ameliorates deficits in neural microstructure in a Disc1 model of psychiatric illness. | Barnett, Brian R; Anderson, Jacqueline M; Torres-Velázquez, Maribel; Yi, Sue Y; Rowley, Paul A; Yu, John-Paul J | Magnetic resonance imaging. | 2019 Sep; | 31103832 | |
| Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data. | Liu, Ke; Newbury, Patrick A; Glicksberg, Benjamin S; Zeng, William Z D; Paithankar, Shreya; Andrechek, Eran R; Chen, Bin | Nature communications. | 2019 05 15; | 31092827 | |
| Interactive impact of childhood maltreatment, depression, and age on cortical brain structure: mega-analytic findings from a large multi-site cohort. | Tozzi, Leonardo; Garczarek, Lisa; Janowitz, Deborah; Stein, Dan J; Wittfeld, Katharina; Dobrowolny, Henrik; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Bülow, Robin; Völzke, Henry; Klinger-König, Johanna; Schnell, Knut; Schoepf, Dieter; Grotegerd, Dominik; Opel, Nils; Dannlowski, Udo; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Kircher, Tilo; Jüksel, Dilara; Nenadić, Igor; Krug, Axel; Hahn, Tim; Steinsträter, Olaf; Redlich, Ronny; Zaremba, Dario; Zurowski, Bartosz; Fu, Cynthia H Y; Dima, Danai; Cole, James; Grabe, Hans J; Connolly, Colm G; Yang, Tony T; Ho, Tiffany C; LeWinn, Kaja Z; Li, Meng; Groenewold, Nynke A; Salminen, Lauren E; Walter, Martin; Simmons, Alan N; van Erp, Theo G M; Jahanshad, Neda; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Hibar, Derrek P; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Frodl, Thomas; ‘for the ENIGMA-MDD Consortium’ | Psychological medicine | 2020 04 | 31084657 | |
| Proteomics Standards Initiative Extended FASTA Format. | Binz, Pierre-Alain; Shofstahl, Jim; Vizcaíno, Juan Antonio; Barsnes, Harald; Chalkley, Robert J; Menschaert, Gerben; Alpi, Emanuele; Clauser, Karl; Eng, Jimmy K; Lane, Lydie; Seymour, Sean L; Sánchez, Luis Francisco Hernández; Mayer, Gerhard; Eisenacher, Martin; Perez-Riverol, Yasset; Kapp, Eugene A; Mendoza, Luis; Baker, Peter R; Collins, Andrew; Van Den Bossche, Tim; Deutsch, Eric W | Journal of proteome research. | 2019 Jun 07; | 31081335 | |
| The Effect of Cardiac Preservation Solutions on Heart Transplant Survival. | Carter, Kristen T; Lirette, Seth T; Baran, David A; Creswell, Lawrence L; Panos, Anthony L; Cochran, Richard P; Copeland, Jack G; Copeland, Hannah | The Journal of surgical research. | 2019 10; | 31078900 | |
| Low Smoking Exposure, the Adolescent Brain, and the Modulating Role of CHRNA5 Polymorphisms. | Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Spechler, Philip A; Potter, Alexandra; Orr, Catherine; D'Alberto, Nicholas; Hudson, Kelsey E; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Higgins, Stephen T; Schumann, Gunter; Althoff, Robert R; Stein, Elliot A; Garavan, Hugh; IMAGEN Consortium | Biological psychiatry. Cognitive neuroscience and neuroimaging. | 2019 Jul; | 31072760 | |
| modEnrichr: a suite of gene set enrichment analysis tools for model organisms. | Kuleshov, Maxim V; Diaz, Jennifer E L; Flamholz, Zachary N; Keenan, Alexandra B; Lachmann, Alexander; Wojciechowicz, Megan L; Cagan, Ross L; Ma'ayan, Avi | Nucleic acids research. | 2019 Jul 02; | 31069376 | |
| Behind Distribution Shift: Mining Driving Forces of Changes and Causal Arrows. | Huang, Biwei; Zhang, Kun; Zhang, Jiji; Sanchez-Romero, Ruben; Glymour, Clark; Schölkopf, Bernhard | Proceedings. IEEE International Conference on Data Mining. | 2017 Nov; | 31068766 | |
| Imputation Strategy for Reliable Regional MRI Morphological Measurements. | Sta Cruz, Shaina; Dinov, Ivo D; Herting, Megan M; González-Zacarías, Clio; Kim, Hosung; Toga, Arthur W; Sepehrband, Farshid | Neuroinformatics. | 2019 May 04; | 31054076 | |
| Amygdalar reactivity is associated with prefrontal cortical thickness in a large population-based sample of adolescents. | Albaugh, Matthew D; Hudziak, James J; Orr, Catherine; Spechler, Philip A; Chaarani, Bader; Mackey, Scott; Lepage, Claude; Fonov, Vladimir; Rioux, Pierre; Evans, Alan C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh; IMAGEN Consortium | PloS one. | 2019; | 31048888 | |
| Integrating data and knowledge to identify functional modules of genes: a multilayer approach. | Liang, Lifan; Chen, Vicky; Zhu, Kunju; Fan, Xiaonan; Lu, Xinghua; Lu, Songjian | BMC bioinformatics. | 2019 May 02; | 31046665 | |
| Reappraisal of variants previously linked with sudden infant death syndrome: results from three population-based cohorts. | Paludan-Müller, Christian; Ghouse, Jonas; Vad, Oliver B; Herfelt, Cecilie B; Lundegaard, Pia; Ahlberg, Gustav; Schmitt, Nicole; Svendsen, Jesper H; Haunsø, Stig; Bundgaard, Henning; Hansen, Torben; Kanters, Jørgen K; Olesen, Morten S | European journal of human genetics : EJHG. | 2019 Sep; | 31043699 | |
| A two-tiered curriculum to improve data management practices for researchers. | Read, Kevin B; Larson, Catherine; Gillespie, Colleen; Oh, So Young; Surkis, Alisa | PloS one. | 2019; | 31042776 | |
| Preference-Sensitive Management of Post-Mammography Decisions in Breast Cancer Diagnosis. | Ayvaci, Mehmet Ulvi Saygi; Alagoz, Oguzhan; Ahsen, Mehmet Eren; Burnside, Elizabeth S | Production and operations management. | 2018 Dec; | 31031555 | |
| Mapping abnormal subcortical neurodevelopment in a cohort of Thai children with HIV. | Wade, Benjamin S C; Valcour, Victor G; Puthanakit, Thanyawee; Saremi, Arvin; Gutman, Boris A; Nir, Talia M; Watson, Christa; Aurpibul, Linda; Kosalaraksa, Pope; Ounchanum, Pradthana; Kerr, Stephen; Dumrongpisutikul, Netsiri; Visrutaratna, Pannee; Srinakarin, Jiraporn; Pothisri, Monthana; Narr, Katherine L; Thompson, Paul M; Ananworanich, Jintanat; Paul, Robert H; Jahanshad, Neda; PREDICT and Resilience Study Groups | NeuroImage. Clinical. | 2019 Apr 02; | 31029050 | |
| Machine learning for phenotyping opioid overdose events. | Badger, Jonathan; LaRose, Eric; Mayer, John; Bashiri, Fereshteh; Page, David; Peissig, Peggy | Journal of biomedical informatics. | 2019 Jun; | 31028874 | |
| Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures. | Cooper, Daniel J; Schürer, Stephan | Molecules (Basel, Switzerland). | 2019 Apr 23; | 31018579 | |
| Artificial intelligence in healthcare. | Yu, Kun-Hsing; Beam, Andrew L; Kohane, Isaac S | Nature biomedical engineering. | 2018 10; | 31015651 | |
| Brain Imaging of the Cortex in ADHD: A Coordinated Analysis of Large-Scale Clinical and Population-Based Samples. | Hoogman, Martine; Muetzel, Ryan; Guimaraes, Joao P; Shumskaya, Elena; Mennes, Maarten; Zwiers, Marcel P; Jahanshad, Neda; Sudre, Gustavo; Wolfers, Thomas; Earl, Eric A; Soliva Vila, Juan Carlos; Vives-Gilabert, Yolanda; Khadka, Sabin; Novotny, Stephanie E; Hartman, Catharina A; Heslenfeld, Dirk J; Schweren, Lizanne J S; Ambrosino, Sara; Oranje, Bob; de Zeeuw, Patrick; Chaim-Avancini, Tiffany M; Rosa, Pedro G P; Zanetti, Marcus V; Malpas, Charles B; Kohls, Gregor; von Polier, Georg G; Seitz, Jochen; Biederman, Joseph; Doyle, Alysa E; Dale, Anders M; van Erp, Theo G M; Epstein, Jeffery N; Jernigan, Terry L; Baur-Streubel, Ramona; Ziegler, Georg C; Zierhut, Kathrin C; Schrantee, Anouk; Høvik, Marie F; Lundervold, Astri J; Kelly, Clare; McCarthy, Hazel; Skokauskas, Norbert; O'Gorman Tuura, Ruth L; Calvo, Anna; Lera-Miguel, Sara; Nicolau, Rosa; Chantiluke, Kaylita C; Christakou, Anastasia; Vance, Alasdair; Cercignani, Mara; Gabel, Matt C; Asherson, Philip; Baumeister, Sarah; Brandeis, Daniel; Hohmann, Sarah; Bramati, Ivanei E; Tovar-Moll, Fernanda; Fallgatter, Andreas J; Kardatzki, Bernd; Schwarz, Lena; Anikin, Anatoly; Baranov, Alexandr; Gogberashvili, Tinatin; Kapilushniy, Dmitry; Solovieva, Anastasia; El Marroun, Hanan; White, Tonya; Karkashadze, Georgii; Namazova-Baranova, Leyla; Ethofer, Thomas; Mattos, Paulo; Banaschewski, Tobias; Coghill, David; Plessen, Kerstin J; Kuntsi, Jonna; Mehta, Mitul A; Paloyelis, Yannis; Harrison, Neil A; Bellgrove, Mark A; Silk, Tim J; Cubillo, Ana I; Rubia, Katya; Lazaro, Luisa; Brem, Silvia; Walitza, Susanne; Frodl, Thomas; Zentis, Mariam; Castellanos, Francisco X; Yoncheva, Yuliya N; Haavik, Jan; Reneman, Liesbeth; Conzelmann, Annette; Lesch, Klaus-Peter; Pauli, Paul; Reif, Andreas; Tamm, Leanne; Konrad, Kerstin; Oberwelland Weiss, Eileen; Busatto, Geraldo F; Louza, Mario R; Durston, Sarah; Hoekstra, Pieter J; Oosterlaan, Jaap; Stevens, Michael C; Ramos-Quiroga, J Antoni; Vilarroya, Oscar; Fair, Damien A; Nigg, Joel T; Thompson, Paul M; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Tiemeier, Henning; Bralten, Janita; Franke, Barbara | The American journal of psychiatry. | 2019 Jul 01; | 31014101 | |
| Automated Debugging in Data-Intensive Scalable Computing. | Gulzar, Muhammad Ali; Interlandi, Matteo; Han, Xueyuan; Li, Mingda; Condie, Tyson; Kim, Miryung | Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). | 2017 Sep; | 31008457 | |
| Adding data provenance support to Apache Spark. | Interlandi, Matteo; Ekmekji, Ari; Shah, Kshitij; Gulzar, Muhammad Ali; Tetali, Sai Deep; Kim, Miryung; Millstein, Todd; Condie, Tyson | The VLDB journal : very large data bases : a publication of the VLDB Endowment. | 2018 Oct; | 31007500 | |
| Neuroimaging Evidence for Right Orbitofrontal Cortex Differences in Adolescents With Emotional and Behavioral Dysregulation. | Spechler, Philip A; Chaarani, Bader; Orr, Catherine; Mackey, Scott; Higgins, Stephen T; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Althoff, Robert R; IMAGEN Consortium | Journal of the American Academy of Child and Adolescent Psychiatry. | 2019 11; | 31004740 | |
| Deep Learning Benchmarks on L1000 Gene Expression Data. | McDermott, Matthew; Wang, Jennifer; Zhao, Wen Ning; Sheridan, Steven D; Szolovits, Peter; Kohane, Isaac; Haggarty, Stephen J; Perlis, Roy H | IEEE/ACM transactions on computational biology and bioinformatics. | 2019 Apr 11; | 30990190 | |
| An average-case sublinear forward algorithm for the haploid Li and Stephens model. | Rosen, Yohei M; Paten, Benedict J | Algorithms for molecular biology : AMB. | 2019; | 30988694 | |
| Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms. | Can, Anil; Lai, Pui Man Rosalind; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose | Scientific reports. | 2019 Apr 15; | 30988354 | |
| ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets. | Pullman, Benjamin S; Wertz, Julie; Carver, Jeremy; Bandeira, Nuno | Journal of proteome research. | 2018 12 07; | 30985146 | |
| Assessing the value of a censored surrogate outcome. | Parast, Layla; Tian, Lu; Cai, Tianxi | Lifetime data analysis. | 2019 Apr 12; | 30980316 | |
| Predictive Big Data Analytics using the UK Biobank Data. | Zhou, Yiwang; Zhao, Lu; Zhou, Nina; Zhao, Yi; Marino, Simeone; Wang, Tuo; Sun, Hanbo; Toga, Arthur W; Dinov, Ivo D | Scientific reports. | 2019 Apr 12; | 30979917 | |
| Reproducible big data science: A case study in continuous FAIRness. | Madduri, Ravi; Chard, Kyle; D'Arcy, Mike; Jung, Segun C; Rodriguez, Alexis; Sulakhe, Dinanath; Deutsch, Eric; Funk, Cory; Heavner, Ben; Richards, Matthew; Shannon, Paul; Glusman, Gustavo; Price, Nathan; Kesselman, Carl; Foster, Ian | PloS one. | 2019; | 30973881 | |
| Modeling Dynamic Missingness of Implicit Feedback for Recommendation. | Wang, Menghan; Gong, Mingming; Zheng, Xiaolin; Zhang, Kun | Advances in neural information processing systems. | 2018 Dec; | 30971864 | |
| Multi-domain Causal Structure Learning in Linear Systems. | Ghassami, AmirEmad; Kiyavash, Negar; Huang, Biwei; Zhang, Kun | Advances in neural information processing systems. | 2018 Dec; | 30971863 | |
| A data citation roadmap for scholarly data repositories. | Fenner, Martin; Crosas, Mercè; Grethe, Jeffrey S; Kennedy, David; Hermjakob, Henning; Rocca-Serra, Phillippe; Durand, Gustavo; Berjon, Robin; Karcher, Sebastian; Martone, Maryann; Clark, Tim | Scientific data. | 2019 04 10; | 30971690 | |
| HDDA: DataSifter: statistical obfuscation of electronic health records and other sensitive datasets. | Marino, Simeone; Zhou, Nina; Zhao, Yi; Wang, Lu; Wu, Qiucheng; Dinov, Ivo D | Journal of statistical computation and simulation. | 2018; | 30962669 | |
| Causal Discovery from Discrete Data using Hidden Compact Representation. | Cai, Ruichu; Qiao, Jie; Zhang, Kun; Zhang, Zhenjie; Hao, Zhifeng | Advances in neural information processing systems. | 2018 Dec; | 30956519 | |
| Unveiling the Kinomes of Leishmania infantum and L. braziliensis Empowers the Discovery of New Kinase Targets and Antileishmanial Compounds. | Borba, Joyce V B; Silva, Arthur C; Ramos, Pablo I P; Grazzia, Nathalia; Miguel, Danilo C; Muratov, Eugene N; Furnham, Nicholas; Andrade, Carolina H | Computational and structural biotechnology journal. | 2019; | 30949306 | |
| Learning one's genetic risk changes physiology independent of actual genetic risk. | Turnwald, Bradley P; Goyer, J Parker; Boles, Danielle Z; Silder, Amy; Delp, Scott L; Crum, Alia J | Nature human behaviour. | 2019 Jan; | 30932047 | |
| Snorkel MeTaL: Weak Supervision for Multi-Task Learning. | Ratner, Alex; Hancock, Braden; Dunnmon, Jared; Goldman, Roger; Ré, Christopher | Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). | 2018 Jun; | 30931438 | |
| Learning the Network Structure of Heterogeneous Data via Pairwise Exponential Markov Random Fields. | Park, Youngsuk; Hallac, David; Boyd, Stephen; Leskovec, Jure | Proceedings of machine learning research. | 2017 Apr; | 30931433 | |
| Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. | Kochunov, Peter; Patel, Binish; Ganjgahi, Habib; Donohue, Brian; Ryan, Meghann; Hong, Elliot L; Chen, Xu; Adhikari, Bhim; Jahanshad, Neda; Thompson, Paul M; Van't Ent, Dennis; den Braber, Anouk; de Geus, Eco J C; Brouwer, Rachel M; Boomsma, Dorret I; Hulshoff Pol, Hilleke E; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Nichols, Thomas E | Frontiers in neuroinformatics. | 2019; | 30914942 | |
| Standardizing Analytic Methods and Reporting in Activity Monitor Validation Studies. | Welk, Gregory J; Bai, Yang; Lee, Jung-Min; Godino, Job; Saint-Maurice, Pedro F; Carr, Lucas | Medicine and science in sports and exercise. | 2019 08; | 30913159 | |
| Anticipating innovations in structural biology. | Berman, Helen M; Lawson, Catherine L; Vallat, Brinda; Gabanyi, Margaret J | Quarterly reviews of biophysics. | 2018 01; | 30912485 | |
| Mechanical activation of noncoding-RNA-mediated regulation of disease-associated phenotypes in human cardiomyocytes. | Kumar, Aditya; Thomas, Stephanie K; Wong, Kirsten C; Lo Sardo, Valentina; Cheah, Daniel S; Hou, Yang-Hsun; Placone, Jesse K; Tenerelli, Kevin P; Ferguson, William C; Torkamani, Ali; Topol, Eric J; Baldwin, Kristin K; Engler, Adam J | Nature biomedical engineering. | 2019 Feb; | 30911429 | |
| Comparison of blockchain platforms: a systematic review and healthcare examples. | Kuo, Tsung-Ting; Zavaleta Rojas, Hugo; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 2019 05 01; | 30907419 | |
| Creating a digital memory notebook application for individuals with mild cognitive impairment to support everyday functioning. | Raghunath, Nisha; Dahmen, Jessamyn; Brown, Katelyn; Cook, Diane; Schmitter-Edgecombe, Maureen | Disability and rehabilitation. Assistive technology | 2020 05 | 30907223 | |
| iSurvive: An Interpretable, Event-time Prediction Model for mHealth. | Dempsey, Walter H; Moreno, Alexander; Scott, Christy K; Dennis, Michael L; Gustafson, David H; Murphy, Susan A; Rehg, James M | Proceedings of machine learning research. | 2017; | 30906932 | |
| ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data. | Manjunath, Mohith; Zhang, Yi; Yeo, Steve H; Sobh, Omar; Russell, Nathan; Followell, Christian; Bushell, Colleen; Ravaioli, Umberto; Song, Jun S | PeerJ. Computer science. | 2018; | 30906871 | |
| Concordance of genetic variation that increases risk for tourette syndrome and that influences its underlying neurocircuitry. | Mufford, Mary; Cheung, Josh; Jahanshad, Neda; van der Merwe, Celia; Ding, Linda; Groenewold, Nynke; Koen, Nastassja; Chimusa, Emile R; Dalvie, Shareefa; Ramesar, Raj; Knowles, James A; Lochner, Christine; Hibar, Derrek P; Paschou, Peristera; van den Heuvel, Odile A; Medland, Sarah E; Scharf, Jeremiah M; Mathews, Carol A; Thompson, Paul M; Stein, Dan J; Psychiatric Genomics Consortium - Tourette Syndrome working group | Translational psychiatry. | 2019 Mar 22; | 30902966 | |
| The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia: design, results and future prospects. | Middeldorp, Christel M; Felix, Janine F; Mahajan, Anubha; EArly Genetics Lifecourse Epidemiology (EAGLE) consortium; Early Growth Genetics (EGG) consortium; McCarthy, Mark I | European journal of epidemiology. | 2019 Mar; | 30887376 | |
| Learning the Structure of Generative Models without Labeled Data. | Bach, Stephen H; He, Bryan; Ratner, Alexander; Ré, Christopher | Proceedings of machine learning research. | 2017 Aug; | 30882087 | |
| ShortFuse: Biomedical Time Series Representations in the Presence of Structured Information. | Fiterau, Madalina; Bhooshan, Suvrat; Fries, Jason; Bournhonesque, Charles; Hicks, Jennifer; Halilaj, Eni; Ré, Christopher; Delp, Scott | Proceedings of machine learning research. | 2017 Aug; | 30882086 | |
| Ancestral characterization of 1018 cancer cell lines highlights disparities and reveals gene expression and mutational differences. | Kessler, Michael D; Bateman, Nicholas W; Conrads, Thomas P; Maxwell, George L; Dunning Hotopp, Julie C; O'Connor, Timothy D | Cancer. | 2019 Mar 13; | 30865299 | |
| When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data. | Gürsoy, Gamze; Harmanci, Arif; Tang, Haixu; Ayday, Erman; Brenner, Steven E | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 2019 | 30864339 | |
| AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets. | Hu, Zhiyue Tom; Ye, Yuting; Newbury, Patrick A; Huang, Haiyan; Chen, Bin | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2019; | 30864327 | |
| Mapping causal pathways from genetics to neuropsychiatric disorders using genome-wide imaging genetics: Current status and future directions. | Le, Brandon D; Stein, Jason L | Psychiatry and clinical neurosciences. | 2019 Jul; | 30864184 | |
| Risk Factors for Development of Carbapenem Resistance Among Gram-Negative Rods. | Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A | Open forum infectious diseases. | 2019 Mar; | 30863785 | |
| SynSys: A Synthetic Data Generation System for Healthcare Applications. | Dahmen, Jessamyn; Cook, Diane | Sensors (Basel, Switzerland). | 2019 Mar 08; | 30857130 | |
| Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications. | Sigdel, Dibakar; Kyi, Vincent; Zhang, Aiden; Setty, Shaun P; Liem, David A; Shi, Yu; Wang, Xuan; Shen, Jiaming; Wang, Wei; Han, JiaWei; Ping, Peipei | Journal of visualized experiments : JoVE. | 2019 02 23; | 30855564 | |
| Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. | Wang, Wenhao; Chen, Guoxing; Pan, Xiaorui; Zhang, Yinqian; Wang, XiaoFeng; Bindschaedler, Vincent; Tang, Haixu; Gunter, Carl A | Conference on Computer and Communications Security : proceedings of the ... conference on computer and communications security. ACM Conference on Computer and Communications Security. | 2017 Oct-Nov; | 30853868 | |
| Unsupervised classification of multi-omics data during cardiac remodeling using deep learning. | Chung, Neo Christopher; Mirza, Bilal; Choi, Howard; Wang, Jie; Wang, Ding; Ping, Peipei; Wang, Wei | Methods (San Diego, Calif.). | 2019 Mar 07; | 30853547 | |
| Leveraging Big Data to Transform Drug Discovery. | Glicksberg, Benjamin S; Li, Li; Chen, Rong; Dudley, Joel; Chen, Bin | Methods in molecular biology (Clifton, N.J.). | 2019; | 30848458 | |
| How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM). | Küçük McGinty, Hande; Visser, Ubbo; Schürer, Stephan | Methods in molecular biology (Clifton, N.J.). | 2019; | 30848456 | |
| Resting-state brain information flow predicts cognitive flexibility in humans. | Chén, Oliver Y; Cao, Hengyi; Reinen, Jenna M; Qian, Tianchen; Gou, Jiangtao; Phan, Huy; De Vos, Maarten; Cannon, Tyrone D | Scientific reports. | 2019 03 07; | 30846746 | |
| Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. | Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon E | Current biology : CB. | 2019 Mar 04; | 30836076 | |
| Federated discovery and sharing of genomic data using Beacons. | Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena | Nature biotechnology. | 2019 03; | 30833764 | |
| Distributed learning from multiple EHR databases: Contextual embedding models for medical events. | Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, Qi | Journal of biomedical informatics. | 2019 Apr; | 30825539 | |
| Enhancing safe routes to school programs through community-engaged citizen science: two pilot investigations in lower density areas of Santa Clara County, California, USA. | Rodriguez, Nicole M; Arce, Alisa; Kawaguchi, Alice; Hua, Jenna; Broderick, Bonnie; Winter, Sandra J; King, Abby C | BMC public health. | 2019 Mar 01; | 30823917 | |
| A Probabilistic Model to Support Radiologists' Classification Decisions in Mammography Practice. | Zeng, Jiaming; Gimenez, Francisco; Burnside, Elizabeth S; Rubin, Daniel L; Shachter, Ross | Medical decision making : an international journal of the Society for Medical Decision Making. | 2019 04; | 30819048 | |
| Genetic Markers of ADHD-Related Variations in Intracranial Volume. | Klein, Marieke; Walters, Raymond K; Demontis, Ditte; Stein, Jason L; Hibar, Derrek P; Adams, Hieab H; Bralten, Janita; Roth Mota, Nina; Schachar, Russell; Sonuga-Barke, Edmund; Mattheisen, Manuel; Neale, Benjamin M; Thompson, Paul M; Medland, Sarah E; Børglum, Anders D; Faraone, Stephen V; Arias-Vasquez, Alejandro; Franke, Barbara | The American journal of psychiatry. | 2019 03 01; | 30818988 | |
| Improving breast cancer risk prediction by using demographic risk factors, abnormality features on mammograms and genetic variants. | Feld, Shara I; Woo, Kaitlin M; Alexandridis, Roxana; Wu, Yirong; Liu, Jie; Peissig, Peggy; Onitilo, Adedayo A; Cox, Jennifer; Page, C David; Burnside, Elizabeth S | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2018; | 30815167 | |
| Privacy-preserving biomedical data dissemination via a hybrid approach. | Jiang, Yichen; Wang, Chenghong; Wu, Zhixuan; Du, Xin; Wang, Shuang | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2018; | 30815160 | |
| Automated Population of an i2b2 Clinical Data Warehouse using FHIR. | Solbrig, Harold R; Hong, Na; Murphy, Shawn N; Jiang, Guoqian | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2018; | 30815141 | |
| Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP. | Hong, Na; Wen, Andrew; Mojarad, Majid Rastegar; Sohn, Sunghwan; Liu, Hongfang; Jiang, Guoqian | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2018; | 30815098 | |
| Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0). | Mi, Huaiyu; Muruganujan, Anushya; Huang, Xiaosong; Ebert, Dustin; Mills, Caitlin; Guo, Xinyu; Thomas, Paul D | Nature protocols. | 2019 03; | 30804569 | |
| Pubertal maturation and sex effects on the default-mode network connectivity implicated in mood dysregulation. | Ernst, Monique; Benson, Brenda; Artiges, Eric; Gorka, Adam X; Lemaitre, Herve; Lago, Tiffany; Miranda, Ruben; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; | Translational psychiatry. | 2019 Feb 25; | 30804326 | |
| Just-in-Time but Not Too Much: Determining Treatment Timing in Mobile Health. | Liao, Peng; Dempsey, Walter; Sarker, Hillol; Hossain, Syed Monowar; Al'absi, Mustafa; Klasnja, Predrag; Murphy, Susan | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. | 2018 Dec; | 30801052 | |
| A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards: From Sequencer to Electronic Health Record. | Campbell, Walter S; Carter, Alexis B; Cushman-Vokoun, Allison M; Greiner, Timothy C; Dash, Rajesh C; Routbort, Mark; de Baca, Monica E; Campbell, James R | The Journal of molecular diagnostics : JMD. | 2019 Feb 20; | 30797065 | |
| Estimating feedforward and feedback effective connections from fMRI time series: Assessments of statistical methods. | Sanchez-Romero, Ruben; Ramsey, Joseph D; Zhang, Kun; Glymour, Madelyn R K; Huang, Biwei; Glymour, Clark | Network neuroscience (Cambridge, Mass.). | 2019; | 30793083 | |
| Wearable Sleep Technology in Clinical and Research Settings. | DE Zambotti, Massimiliano; Cellini, Nicola; Goldstone, Aimée; Colrain, Ian M; Baker, Fiona C | Medicine and science in sports and exercise. | 2019 07; | 30789439 | |
| Crowdsourcing to delineate skin affected by chronic graft-vs-host disease. | Tkaczyk, Eric R; Coco, Joseph R; Wang, Jianing; Chen, Fuyao; Ye, Cheng; Jagasia, Madan H; Dawant, Benoit M; Fabbri, Daniel | Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI). | 2019 Jul; | 30786065 | |
| The variable quality of metadata about biological samples used in biomedical experiments. | Gonçalves, Rafael S; Musen, Mark A | Scientific data. | 2019 Feb 19; | 30778255 | |
| Racial Differences in Maintaining Optimal Health Behaviors Into Middle Age. | Booth 3rd, John N; Allen, Norrina B; Calhoun, David; Carson, April P; Deng, Luqin; Goff Jr, David C; Redden, David T; Reis, Jared P; Shimbo, Daichi; Shikany, James M; Sidney, Stephen; Spring, Bonnie; Lewis, Cora E; Muntner, Paul | American journal of preventive medicine. | 2019 Mar; | 30777156 | |
| Instance-Specific Bayesian Network Structure Learning. | Jabbari, Fattaneh; Visweswaran, Shyam; Cooper, Gregory F | Proceedings of machine learning research. | 2018 Sep; | 30775723 | |
| An Integrated Analysis of Neural Network Correlates of Categorical and Dimensional Models of Attention-Deficit/Hyperactivity Disorder. | Pruim, Raimon H R; Beckmann, Christian F; Oldehinkel, Marianne; Oosterlaan, Jaap; Heslenfeld, Dirk; Hartman, Catharina A; Hoekstra, Pieter J; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Mennes, Maarten | Biological psychiatry. Cognitive neuroscience and neuroimaging. | 2019 05; | 30773473 | |
| Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders. | Pearl, Jocelynn R; Colantuoni, Carlo; Bergey, Dani E; Funk, Cory C; Shannon, Paul; Basu, Bijoya; Casella, Alex M; Oshone, Rediet T; Hood, Leroy; Price, Nathan D; Ament, Seth A | Cell systems. | 2019 02 27; | 30772379 | |
| Progressive brain atrophy in chronically infected and treated HIV+ individuals. | Nir, Talia M; Jahanshad, Neda; Ching, Christopher R K; Cohen, Ronald A; Harezlak, Jaroslaw; Schifitto, Giovanni; Lam, Hei Y; Hua, Xue; Zhong, Jianhui; Zhu, Tong; Taylor, Michael J; Campbell, Thomas B; Daar, Eric S; Singer, Elyse J; Alger, Jeffry R; Thomps | Journal of neurovirology. | 2019 Feb 14; | 30767174 | |
| Evolution of resilience in protein interactomes across the tree of life. | Zitnik, Marinka; Sosi?, Rok; Feldman, Marcus W; Leskovec, Jure | Proceedings of the National Academy of Sciences of the United States of America. | 2019 Mar 05; | 30765515 | |
| Hyperbolic Wasserstein Distance for Shape Indexing. | Shi, Jie; Wang, Yalin | IEEE transactions on pattern analysis and machine intelligence. | 2019 Feb 08; | 30763239 | |
| DPPred: An Effective Prediction Framework with Concise Discriminative Patterns. | Shang, Jingbo; Jiang, Meng; Tong, Wenzhu; Xiao, Jinfeng; Peng, Jian; Han, Jiawei; Pooled Resource Open-Access ALS Clinical Trials Consortium* | IEEE transactions on knowledge and data engineering. | 2018 Jul; | 30745791 | |
| Feasibility of using social media to monitor outdoor air pollution in London, England. | Hswen, Yulin; Qin, Qiuyuan; Brownstein, John S; Hawkins, Jared B | Preventive medicine. | 2019 04; | 30742873 | |
| Feature extraction for phenotyping from semantic and knowledge resources. | Ning, Wenxin; Chan, Stephanie; Beam, Andrew; Yu, Ming; Geva, Alon; Liao, Katherine; Mullen, Mary; Mandl, Kenneth D; Kohane, Isaac; Cai, Tianxi; Yu, Sheng | Journal of biomedical informatics. | 2019 Mar; | 30738949 | |
| ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model. | Yu, Yue; Ruddy, Kathryn J; Hong, Na; Tsuji, Shintaro; Wen, Andrew; Shah, Nilay D; Jiang, Guoqian | Journal of biomedical informatics. | 2019 Mar; | 30738946 | |
| Objective risk stratification of prostate cancer using machine learning and radiomics applied to multiparametric magnetic resonance images. | Varghese, Bino; Chen, Frank; Hwang, Darryl; Palmer, Suzanne L; De Castro Abreu, Andre Luis; Ukimura, Osamu; Aron, Monish; Aron, Manju; Gill, Inderbir; Duddalwar, Vinay; Pandey, Gaurav | Scientific reports. | 2019 Feb 07; | 30733585 | |
| Glycoproteomic Profiling Provides Candidate Myocardial Infarction Predictors of Later Progression to Heart Failure. | Deleon-Pennell, Kristine Y; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L | ACS omega. | 2019 Jan 31; | 30729226 | |
| Predicting opioid dependence from electronic health records with machine learning. | Ellis, Randall J; Wang, Zichen; Genes, Nicholas; Ma'ayan, Avi | BioData mining. | 2019; | 30728857 | |
| The Cortical Neuroimmune Regulator TANK Affects Emotional Processing and Enhances Alcohol Drinking: A Translational Study. | Müller, Christian P; Chu, Congying; Qin, Liya; Liu, Chunyu; Xu, Bing; Gao, He; Ruggeri, Barbara; Hieber, Saskia; Schneider, Julia; Jia, Tianye; Tay, Nicole; Akira, Shizuo; Satoh, Takashi; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Bakalkin, Georgy; Liu, Yun; Desrivières, Sylvane; Elliott, Paul; Eulenburg, Volker; Levy, Daniel; Crews, Fulton; Schumann, Gunter | Cerebral cortex (New York, N.Y. : 1991). | 2019 04 01; | 30721969 | |
| Adaptive Identification of Cortical and Subcortical Imaging Markers of Early Life Stress and Posttraumatic Stress Disorder. | Salminen, Lauren E; Morey, Rajendra A; Riedel, Brandalyn C; Jahanshad, Neda; Dennis, Emily L; Thompson, Paul M | Journal of neuroimaging : official journal of the American Society of Neuroimaging. | 2019 Feb 03; | 30714246 | |
| Selecting precise reference normal tissue samples for cancer research using a deep learning approach. | Zeng, William Z D; Glicksberg, Benjamin S; Li, Yangyan; Chen, Bin | BMC medical genomics. | 2019 Jan 31; | 30704474 | |
| Automatic real-time gait event detection in children using deep neural networks. | Kidzi?ski, ?ukasz; Delp, Scott; Schwartz, Michael | PloS one. | 2019; | 30703141 | |
| An Acute Randomized Controlled Trial of Noninvasive Peripheral Nerve Stimulation in Essential Tremor. | Pahwa, Rajesh; Dhall, Rohit; Ostrem, Jill; Gwinn, Ryder; Lyons, Kelly; Ro, Susie; Dietiker, Cameron; Luthra, Nijee; Chidester, Paula; Hamner, Samuel; Ross, Erika; Delp, Scott | Neuromodulation : journal of the International Neuromodulation Society. | 2019 Jul; | 30701655 | |
| Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD. | Chen, Guocai; Jia, Yuxi; Zhu, Lisha; Li, Ping; Zhang, Lin; Tao, Cui; Jim Zheng, W | BMC medical informatics and decision making. | 2019 Jan 31; | 30700303 | |
| Concordance of genetic variation that increases risk for anxiety disorders and posttraumatic stress disorders and that influences their underlying neurocircuitry. | van der Merwe, Celia; Jahanshad, Neda; Cheung, Josh W; Mufford, Mary; Groenewold, Nynke A; Koen, Nastassja; Ramesar, Rajkumar; Dalvie, Shareefa; ENIGMA Consortium PGC-PTSD; Knowles, James A; Hibar, Derrek P; Nievergelt, Caroline M; Koenen, Karestan C; Liberzon, Israel; Ressler, Kerry J; Medland, Sarah E; Morey, Rajendra A; Thompson, Paul M; Stein, Dan J | Journal of affective disorders. | 2019 02 15; | 30699873 | |
| Machine Learning and Integrative Analysis of Biomedical Big Data. | Mirza, Bilal; Wang, Wei; Wang, Jie; Choi, Howard; Chung, Neo Christopher; Ping, Peipei | Genes. | 2019 01 28; | 30696086 | |
| Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data. | Grossman, Robert L | Trends in genetics : TIG. | 2019 Mar; | 30691868 | |
| mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. | Hoffmann, Nils; Rein, Joel; Sachsenberg, Timo; Hartler, Jürgen; Haug, Kenneth; Mayer, Gerhard; Alka, Oliver; Dayalan, Saravanan; Pearce, Jake T M; Rocca-Serra, Philippe; Qi, Da; Eisenacher, Martin; Perez-Riverol, Yasset; Vizcaíno, Juan Antonio; Salek, Reza M; Neumann, Steffen; Jones, Andrew R | Analytical chemistry. | 2019 Mar 05; | 30688441 | |
| The principles of tomorrow's university. | Katz, Daniel S; Allen, Gabrielle; Barba, Lorena A; Berg, Devin R; Bik, Holly; Boettiger, Carl; Borgman, Christine L; Brown, C Titus; Buck, Stuart; Burd, Randy; de Waard, Anita; Eve, Martin Paul; Granger, Brian E; Greenberg, Josh; Howe, Adina; Howe, Bill; Khanna, May; Killeen, Timothy L; Mayernik, Matthew; McKiernan, Erin; Mentzel, Chris; Merchant, Nirav; Niemeyer, Kyle E; Noren, Laura; Nusser, Sarah M; Reed, Daniel A; Seidel, Edward; Smith, MacKenzie; Spies, Jeffrey R; Turk, Matt; Van Horn, John D; Walsh, Jay | F1000Research. | 2018; | 30687499 | |
| Context-Specific Nested Effects Models. | Sverchkov, Yuriy; Ho, Yi-Hsuan; Gasch, Audrey; Craven, Mark | Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005-). | 2018 Apr; | 30680375 | |
| Reproducible grey matter patterns index a multivariate, global alteration of brain structure in schizophrenia and bipolar disorder. | Schwarz, Emanuel; Doan, Nhat Trung; Pergola, Giulio; Westlye, Lars T; Kaufmann, Tobias; Wolfers, Thomas; Brecheisen, Ralph; Quarto, Tiziana; Ing, Alex J; Carlo, Pasquale Di; Gurholt, Tiril P; Harms, Robbert L; Noirhomme, Quentin; Moberget, Torgeir; Agartz, Ingrid; Andreassen, Ole A; Bellani, Marcella; Bertolino, Alessandro; Blasi, Giuseppe; Brambilla, Paolo; Buitelaar, Jan K; Cervenka, Simon; Flyckt, Lena; Frangou, Sophia; Franke, Barbara; Hall, Jeremy; Heslenfeld, Dirk J; Kirsch, Peter; McIntosh, Andrew M; Nöthen, Markus M; Papassotiropoulos, Andreas; de Quervain, Dominique J-F; Rietschel, Marcella; Schumann, Gunter; Tost, Heike; Witt, Stephanie H; Zink, Mathias; Meyer-Lindenberg, Andreas; IMAGEMEND Consortium, Karolinska Schizophrenia Project (KaSP) Consortium | Translational psychiatry. | 2019 Jan 17; | 30664633 | |
| A Data Analysis Method for Using Longitudinal Binary Outcome Data from a SMART to Compare Adaptive Interventions. | Dziak, John J; Yap, Jamie R T; Almirall, Daniel; McKay, James R; Lynch, Kevin G; Nahum-Shani, Inbal | Multivariate behavioral research. | 2019 Jan 20; | 30663401 | |
| A Potential Role for the STXBP5-AS1 Gene in Adult ADHD Symptoms. | Arias-Vásquez, A; Groffen, A J; Spijker, S; Ouwens, K G; Klein, M; Vojinovic, D; Galesloot, T E; Bralten, J; Hottenga, J J; van der Most, P J; Kattenberg, V M; Pool, R; Nolte, I M; Penninx, B W J H; Fedko, I O; Dolan, C V; Nivard, M G; den Braber, A; van Duijn, C M; Hoekstra, P J; Buitelaar, J K; Kiemeney, L A; Hoogman, M; Middeldorp, C M; Draisma, H H M; Vermeulen, S H; Sánchez-Mora, C; Ramos-Quiroga, J A; Ribasés, M; EAGLE-ADHD Consortium; Hartman, C A; Kooij, J J S; Amin, N; Smit, A B; Franke, B; Boomsma, D I | Behavior genetics. | 2019 05; | 30659475 | |
| PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient. | Kalari, Krishna R; Sinnwell, Jason P; Thompson, Kevin J; Tang, Xiaojia; Carlson, Erin E; Yu, Jia; Vedell, Peter T; Ingle, James N; Weinshilboum, Richard M; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Suman, Vera | JCO clinical cancer informatics. | 2018 12; | 30652605 | |
| Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2. | Dudenkov, Tanda M; Liu, Duan; Cairns, Junmei; Devarajan, Sandhya; Zhuang, Yongxian; Ingle, James N; Buzdar, Aman U; Robson, Mark E; Kubo, Michiaki; Batzler, Anthony; Barman, Poulami; Jenkins, Gregory D; Carlson, Erin E; Goetz, Matthew P; Northfelt, Donald W; Moreno-Aspitia, Alvaro; Desta, Zeruesenay; Reid, Joel M; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard M | Clinical pharmacology and therapeutics. | 2019 Jan 16; | 30648747 | |
| Development and Validation of an Electronic Health Record-Based Machine Learning Model to Estimate Delirium Risk in Newly Hospitalized Patients Without Known Cognitive Impairment. | Wong, Andrew; Young, Albert T; Liang, April S; Gonzales, Ralph; Douglas, Vanja C; Hadley, Dexter | JAMA network open. | 2018 08 03; | 30646095 | |
| Grey Matter Volume Differences Associated with Extremely Low Levels of Cannabis Use in Adolescence. | Orr, Catherine; Spechler, Philip; Cao, Zhipeng; Albaugh, Matthew; Chaarani, Bader; Mackey, Scott; D'Souza, Deepak; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Radhakrishnan, Rajiv; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra; Garavan, Hugh | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 2019 Mar 06; | 30643026 | |
| The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology. | Schnetz, Michael P; Hochheiser, Harry S; Danks, David J; Landsittel, Douglas P; Vogt, Keith M; Ibinson, James W; Whitehurst, Steven L; McDermott, Sean P; Duque, Melissa Giraldo; Kaynar, Ata M | BMC medical research methodology. | 2019 Jan 14; | 30642260 | |
| Creating custom Foldit puzzles for teaching biochemistry. | Dsilva, Lorna; Mittal, Shubhi; Koepnick, Brian; Flatten, Jeff; Cooper, Seth; Horowitz, Scott | Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology. | 2019 Jan 14; | 30638297 | |
| Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes. | Hejblum, Boris P; Weber, Griffin M; Liao, Katherine P; Palmer, Nathan P; Churchill, Susanne; Shadick, Nancy A; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi | Scientific data. | 2019 Jan 08; | 30620344 | |
| Analytic Tools for Post-traumatic Epileptogenesis Biomarker Search in Multimodal Dataset of an Animal Model and Human Patients. | Duncan, Dominique; Barisano, Giuseppe; Cabeen, Ryan; Sepehrband, Farshid; Garner, Rachael; Braimah, Adebayo; Vespa, Paul; Pitkänen, Asla; Law, Meng; Toga, Arthur W | Frontiers in neuroinformatics. | 2018; | 30618695 | |
| Decreased brain connectivity in smoking contrasts with increased connectivity in drinking. | Cheng, Wei; Rolls, Edmund T; Robbins, Trevor W; Gong, Weikang; Liu, Zhaowen; Lv, Wujun; Du, Jingnan; Wen, Hongkai; Ma, Liang; Quinlan, Erin Burke; Garavan, Hugh; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Smolka, Michael N; Schumann, Gunter; Kendrick, Keith; Feng, Jianfeng | eLife. | 2019 Jan 08; | 30616717 | |
| Notch signaling activation induces cell death in MAPKi-resistant melanoma cells. | Mikheil, Dareen M; Prabhakar, Kirthana; Arshad, Ayyan; Rodriguez, Carlos I; Newton, Michael A; Setaluri, Vijayasaradhi | Pigment cell & melanoma research. | 2019 Jan 07; | 30614626 | |
| A Monte Carlo Approach to Skill-Based Automated Playtesting. | Horn, Britton; Miller, Josh Aaron; Smith, Gillian; Cooper, Seth | Proceedings. AAAI Artificial Intelligence and Interactive Digital Entertainment Conference. | 2018 Nov; | 30613687 | |
| Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality. | Soler Artigas, María; Sánchez-Mora, Cristina; Rovira, Paula; Richarte, Vanesa; Garcia-Martínez, Iris; Pagerols, Mireia; Demontis, Ditte; Stringer, Sven; ADHD Group of the Psychiatric Genomics Consortium, International Cannabis Consortium; Vink, Jacqueline M; Børglum, Anders D; Neale, Benjamin M; Franke, Barbara; Faraone, Stephen V; Casas, Miguel; Ramos-Quiroga, Josep Antoni; Ribasés, Marta | Molecular psychiatry. | 2020 Oct; | 30610198 | |
| Using High-Resolution Variant Frequencies Empowers Clinical Genome Interpretation and Enables Investigation of Genetic Architecture. | Whiffin, Nicola; Roberts, Angharad M; Minikel, Eric; Zappala, Zach; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Harrison, Steven M; Thomson, Kate L; Sage, Helen; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel G; Ware, James S | American journal of human genetics. | 2019 01 03; | 30609406 | |
| Discovering functional impacts of miRNAs in cancers using a causal deep learning model. | Chen, Lujia; Lu, Xinghua | BMC medical genomics. | 2018 Dec 31; | 30598118 | |
| Potential corner case cautions regarding publicly available implementations of the National Cancer Institute's nonwear/wear classification algorithm for accelerometer data. | Moore 4th, Hyatt E; Haydel, K Farish; Banda, Jorge A; Fiterau, Madalina; Desai, Manisha; Robinson, Thomas N | PloS one. | 2018; | 30596771 | |
| Mining data and metadata from the gene expression omnibus. | Wang, Zichen; Lachmann, Alexander; Ma'ayan, Avi | Biophysical reviews. | 2019 Feb; | 30594974 | |
| Maximizing the promise of citizen science to advance health and prevent disease. | King, Abby C; Winter, Sandra J; Chrisinger, Benjamin W; Hua, Jenna; Banchoff, Ann W | Preventive medicine. | 2019 Feb; | 30593793 | |
| BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2. | Cline, Melissa S; Liao, Rachel G; Parsons, Michael T; Paten, Benedict; Alquaddoomi, Faisal; Antoniou, Antonis; Baxter, Samantha; Brody, Larry; Cook-Deegan, Robert; Coffin, Amy; Couch, Fergus J; Craft, Brian; Currie, Robert; Dlott, Chloe C; Dolman, Lena; den Dunnen, Johan T; Dyke, Stephanie O M; Domchek, Susan M; Easton, Douglas; Fischmann, Zachary; Foulkes, William D; Garber, Judy; Goldgar, David; Goldman, Mary J; Goodhand, Peter; Harrison, Steven; Haussler, David; Kato, Kazuto; Knoppers, Bartha; Markello, Charles; Nussbaum, Robert; Offit, Kenneth; Plon, Sharon E; Rashbass, Jem; Rehm, Heidi L; Robson, Mark; Rubinstein, Wendy S; Stoppa-Lyonnet, Dominique; Tavtigian, Sean; Thorogood, Adrian; Zhang, Can; Zimmermann, Marc; BRCA Challenge Authors; Burn, John; Chanock, Stephen; Rätsch, Gunnar; Spurdle, Amanda B | PLoS genetics. | 2018 12; | 30586411 | |
| Pharmacokinetic-Pharmacodynamic interaction associated with venlafaxine-XR remission in patients with major depressive disorder with history of citalopram / escitalopram treatment failure. | Ahmed, Ahmed T; Biernacka, Joanna M; Jenkins, Gregory; Rush, A John; Shinozaki, Gen; Veldic, Marin; Kung, Simon; Bobo, William V; Hall-Flavin, Daniel K; Weinshilboum, Richard M; Wang, Liewei; Frye, Mark A | Journal of affective disorders. | 2019 03 01; | 30578947 | |
| A concise and persistent feature to study brain resting-state network dynamics: Findings from the Alzheimer's Disease Neuroimaging Initiative. | Kuang, Liqun; Han, Xie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative | Human brain mapping. | 2019 Mar; | 30569583 | |
| BMI-related cortical morphometry changes are associated with altered white matter structure. | Medic, Nenad; Kochunov, Peter; Ziauddeen, Hisham; Ersche, Karen D; Nathan, Pradeep J; Ronan, Lisa; Fletcher, Paul C | International journal of obesity (2005). | 2019 03; | 30568264 | |
| Using machine learning to identify health outcomes from electronic health record data. | Wong, Jenna; Horwitz, Mara Murray; Zhou, Li; Toh, Sengwee | Current epidemiology reports. | 2018 Dec; | 30555773 | |
| Exchangeable Markov survival processes and weak continuity of predictive distributions. | Dempsey, Walter; McCullagh, Peter | Electronic journal of statistics. | 2017; | 30555616 | |
| Uncovering Biologically Coherent Peripheral Signatures of Health and Risk for Alzheimer's Disease in the Aging Brain. | Riedel, Brandalyn C; Daianu, Madelaine; Ver Steeg, Greg; Mezher, Adam; Salminen, Lauren E; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative | Frontiers in aging neuroscience. | 2018; | 30555318 | |
| Stochastic Learning for Sparse Discrete Markov Random Fields with Controlled Gradient Approximation Error. | Geng, Sinong; Kuang, Zhaobin; Liu, Jie; Wright, Stephen; Page, David | Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. | 2018 Aug; | 30555282 | |
| Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. | Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon E | Current biology : CB. | 2019 Jan 07; | 30554901 | |
| A nurse-driven method for developing artificial intelligence in ''smart'' homes for aging-in-place. | Fritz, Roschelle L; Dermody, Gordana | Nursing outlook. | 2018 Nov 23; | 30551883 | |
| A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization. | Kuang, Zhaobin; Bao, Yujia; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Willett, Rebecca; Page, David | Methods in molecular biology (Clifton, N.J.). | 2019; | 30547447 | |
| ADAPTIVE GRADIENT DESCENT OPTIMIZATION OF INITIAL MOMENTA FOR GEODESIC SHOOTING IN DIFFEOMORPHISMS. | Fleishman, Greg M; Thompson, Paul M | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017 Apr; | 30546823 | |
| Monitoring Online Discussions About Suicide Among Twitter Users With Schizophrenia: Exploratory Study. | Hswen, Yulin; Naslund, John A; Brownstein, John S; Hawkins, Jared B | JMIR mental health. | 2018 Dec 13; | 30545811 | |
| Peer victimization and its impact on adolescent brain development and psychopathology. | Quinlan, Erin Burke; Barker, Edward D; Luo, Qiang; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium | Molecular psychiatry. | 2020 11; | 30542059 | |
| Age-Related Differences in Brain Morphology and the Modifiers in Middle-Aged and Older Adults. | Zhao, Lu; Matloff, William; Ning, Kaida; Kim, Hosung; Dinov, Ivo D; Toga, Arthur W | Cerebral cortex (New York, N.Y. : 1991). | 2019 09 13; | 30535294 | |
| Validity of Privacy-Protecting Analytical Methods That Use Only Aggregate-Level Information to Conduct Multivariable-Adjusted Analysis in Distributed Data Networks. | Li, Xiaojuan; Fireman, Bruce H; Curtis, Jeffrey R; Arterburn, David E; Fisher, David P; Moyneur, Érick; Gallagher, Mia; Raebel, Marsha A; Nowell, W Benjamin; Lagreid, Lindsay; Toh, Sengwee | American journal of epidemiology. | 2019 Apr 01; | 30535131 | |
| atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding. | Shin, Sunyoung; Hudson, Rebecca; Harrison, Christopher; Craven, Mark; Kele?, Sündüz | Bioinformatics (Oxford, England). | 2019 08 01; | 30534948 | |
| Genetic analysis of neurodegenerative diseases in a pathology cohort. | Blauwendraat, Cornelis; Pletnikova, Olga; Geiger, Joshua T; Murphy, Natalie A; Abramzon, Yevgeniya; Rudow, Gay; Mamais, Adamantios; Sabir, Marya S; Crain, Barbara; Ahmed, Sarah; Rosenthal, Liana S; Bakker, Catherine C; Faghri, Faraz; Chia, Ruth; Ding, Jin | Neurobiology of aging. | 2019 Apr; | 30528841 | |
| Unveiling the Role of the Most Impactful Cardiovascular Risk Locus through Haplotype Editing. | Lo Sardo, Valentina; Chubukov, Pavel; Ferguson, William; Kumar, Aditya; Teng, Evan L; Duran, Michael; Zhang, Lei; Cost, Gregory; Engler, Adam J; Urnov, Fyodor; Topol, Eric J; Torkamani, Ali; Baldwin, Kristin K | Cell. | 2018 Dec 13; | 30528432 | |
| Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma. | Hong, Na; Zhang, Ning; Wu, Huawei; Lu, Shanshan; Yu, Yue; Hou, Li; Lu, Yinying; Liu, Hongfang; Jiang, Guoqian | BMC medical informatics and decision making. | 2018 12 07; | 30526572 | |
| Allele-Specific Methylation of SPDEF: A Novel Moderator of Psychosocial Stress and Substance Abuse. | Tay, Nicole; Macare, Christine; Liu, Yun; Ruggeri, Barbara; Jia, Tianye; Chu, Congying; Biondo, Francesca; Ing, Alex; Luo, Qiang; Sarkysian, Daniil; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Frieling, Helge; Bleich, Stefan; Barker, Edward D; Syvänen, Ann-Christine; Rüegg, Joëlle; Ekström, Tomas J; Bakalkin, Georgy; Schumann, Gunter; IMAGEN Consortium | The American journal of psychiatry. | 2019 02 01; | 30525907 | |
| Collaboration Matters: Honey Bee Health as a Transdisciplinary Model for Understanding Real-World Complexity. | Suryanarayanan, Sainath; Kleinman, Daniel Lee; Gratton, Claudio; Toth, Amy; Guedot, Christelle; Groves, Russell; Piechowski, John; Moore, Brad; Hagedorn, Deborah; Kauth, Dayton; Swan, Heather; Celley, Mary | Bioscience. | 2018 Dec 01; | 30524133 | |
| A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry. | Swearingen, Kristian E; Eng, Jimmy K; Shteynberg, David; Vigdorovich, Vladimir; Springer, Timothy A; Mendoza, Luis; Sather, D Noah; Deutsch, Eric W; Kappe, Stefan H I; Moritz, Robert L | Journal of proteome research. | 2019 Feb 01; | 30523691 | |
| Exploration of Shared Genetic Architecture Between Subcortical Brain Volumes and Anorexia Nervosa. | Walton, E; Hibar, D; Yilmaz, Z; Jahanshad, N; Cheung, J; Batury, V-L; Seitz, J; Bulik, C M; PGC-ED; ENIGMA Genetics Working Group; Thompson, P M; Ehrlich, Stefan | Molecular neurobiology | 2019 Jul | 30519816 | |
| The Role of the Aryl Hydrocarbon Receptor (AHR) in Immune and Inflammatory Diseases. | Neavin, Drew R; Liu, Duan; Ray, Balmiki; Weinshilboum, Richard M | International journal of molecular sciences. | 2018 Dec 03; | 30513921 | |
| Practical Model Selection for Prospective Virtual Screening. | Liu, Shengchao; Alnammi, Moayad; Ericksen, Spencer S; Voter, Andrew F; Ananiev, Gene E; Keck, James L; Hoffmann, F Michael; Wildman, Scott A; Gitter, Anthony | Journal of chemical information and modeling. | 2019 Jan 28; | 30500183 | |
| Genomic kinship construction to enhance genetic analyses in the human connectome project data. | Kochunov, Peter; Donohue, Brian; Mitchell, Braxton D; Ganjgahi, Habib; Adhikari, Bhim; Ryan, Meghann; Medland, Sarah E; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Fieremans, Els; Novikov, Dmitry S; Marcus, Daniel; Van Essen, David C; Glahn, David | Human brain mapping. | 2019 Apr 01; | 30496643 | |
| High-frequency actionable pathogenic exome variants in an average-risk cohort. | Rego, Shannon; Dagan-Rosenfeld, Orit; Zhou, Wenyu; Sailani, M Reza; Limcaoco, Patricia; Colbert, Elizabeth; Avina, Monika; Wheeler, Jessica; Craig, Colleen; Salins, Denis; Röst, Hannes L; Dunn, Jessilyn; McLaughlin, Tracey; Steinmetz, Lars M; Bernstein, Jonathan A; Snyder, Michael P | Cold Spring Harbor molecular case studies. | 2018 12; | 30487145 | |
| A primer on deep learning in genomics. | Zou, James; Huss, Mikael; Abid, Abubakar; Mohammadi, Pejman; Torkamani, Ali; Telenti, Amalio | Nature genetics | 2019 01 | 30478442 | |
| Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. | Schleifer, Charles; Lin, Amy; Kushan, Leila; Ji, Jie Lisa; Yang, Genevieve; Bearden, Carrie E; Anticevic, Alan | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 2019 Feb 13; | 30478034 | |
| Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. | Köhler, Sebastian; Carmody, Leigh; Vasilevsky, Nicole; Jacobsen, Julius O B; Danis, Daniel; Gourdine, Jean-Philippe; Gargano, Michael; Harris, Nomi L; Matentzoglu, Nicolas; McMurry, Julie A; Osumi-Sutherland, David; Cipriani, Valentina; Balhoff, James P; Conlin, Tom; Blau, Hannah; Baynam, Gareth; Palmer, Richard; Gratian, Dylan; Dawkins, Hugh; Segal, Michael; Jansen, Anna C; Muaz, Ahmed; Chang, Willie H; Bergerson, Jenna; Laulederkind, Stanley J F; Yüksel, Zafer; Beltran, Sergi; Freeman, Alexandra F; Sergouniotis, Panagiotis I; Durkin, Daniel; Storm, Andrea L; Hanauer, Marc; Brudno, Michael; Bello, Susan M; Sincan, Murat; Rageth, Kayli; Wheeler, Matthew T; Oegema, Renske; Lourghi, Halima; Della Rocca, Maria G; Thompson, Rachel; Castellanos, Francisco; Priest, James; Cunningham-Rundles, Charlotte; Hegde, Ayushi; Lovering, Ruth C; Hajek, Catherine; Olry, Annie; Notarangelo, Luigi; Similuk, Morgan; Zhang, Xingmin A; Gómez-Andrés, David; Lochmüller, Hanns; Dollfus, Hélène; Rosenzweig, Sergio; Marwaha, Shruti; Rath, Ana; Sullivan, Kathleen; Smith, Cynthia; Milner, Joshua D; Leroux, Dorothée; Boerkoel, Cornelius F; Klion, Amy; Carter, Melody C; Groza, Tudor; Smedley, Damian; Haendel, Melissa A; Mungall, Chris; Robinson, Peter N | Nucleic acids research. | 2019 Jan 08; | 30476213 | |
| Protein Inference Using PIA Workflows and PSI Standard File Formats. | Uszkoreit, Julian; Perez-Riverol, Yasset; Eggers, Britta; Marcus, Katrin; Eisenacher, Martin | Journal of proteome research. | 2019 02 01; | 30474983 | |
| Reply to: New Meta- and Mega-analyses of Magnetic Resonance Imaging Findings in Schizophrenia: Do They Really Increase Our Knowledge About the Nature of the Disease Process? | van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Clark, Vincent P; Mueller, Bryon A; de Zwarte, Sonja M C; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Gurholt, Tiril P; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Catts, Stanley; Fullerton, Janice M; Green, Melissa J; Henskens, Frans; Jablensky, Assen; Mowry, Bryan J; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Hong, Elliot; Kochunov, Peter; Gur, Raquel E; Gur, Ruben C; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; Potkin, Steven G; Preda, Adrian; Fan, Fengmei; Ehrlich, Stefan; King, Margaret D; De Haan, Lieuwe; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; Pomarol-Clotet, Edith; Kelly, Sinead; Ciufolini, Simone; Radua, Joaquim; Murray, Robin; Marques, Tiago Reis; Simmons, Andrew; Borgwardt, Stefan; Schönborn-Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Yun, Je-Yeon; Cannon, Dara M; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; McIntosh, Andrew M; Whalley, Heather C; Knöchel, Christian; Oertel-Knöchel, Viola; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A | Biological psychiatry. | 2019 04 01; | 30470561 | |
| Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities. | Zitnik, Marinka; Nguyen, Francis; Wang, Bo; Leskovec, Jure; Goldenberg, Anna; Hoffman, Michael M | An international journal on information fusion. | 2019 Oct; | 30467459 | |
| Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder. | Athreya, Arjun; Iyer, Ravishankar; Neavin, Drew; Wang, Liewei; Weinshilboum, Richard; Kaddurah-Daouk, Rima; Rush, John; Frye, Mark; Bobo, William | IEEE computational intelligence magazine. | 2018 Aug; | 30467458 | |
| EDGE EXCHANGEABLE MODELS FOR INTERACTION NETWORKS. | Crane, Harry; Dempsey, Walter | Journal of the American Statistical Association. | 2018; | 30467447 | |
| Assessing Time-Varying Causal Effect Moderation in Mobile Health. | Boruvka, Audrey; Almirall, Daniel; Witkiewitz, Katie; Murphy, Susan A | Journal of the American Statistical Association. | 2018; | 30467446 | |
| Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers. | Lituiev, Dmytro S; Trivedi, Hari; Panahiazar, Maryam; Norgeot, Beau; Seo, Youngho; Franc, Benjamin; Harnish, Roy; Kawczynski, Michael; Hadley, Dexter | Journal of digital imaging. | 2019 Apr; | 30465142 | |
| Repurposing Citizen Science Games as Software Tools for Professional Scientists. | Cooper, Seth; Sterling, Amy L R; Kleffner, Robert; Silversmith, William M; Siegel, Justin B | FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. | 2018 Aug; | 30465045 | |
| Learning Time Series Detection Models from Temporally Imprecise Labels. | Adams, Roy J; Marlin, Benjamin M | Proceedings of machine learning research. | 2017 Apr; | 30465043 | |
| Yum-Me: A Personalized Nutrient-Based Meal Recommender System. | Yang, Longqi; Hsieh, Cheng-Kang; Yang, Hongjian; Pollak, John P; Dell, Nicola; Belongie, Serge; Cole, Curtis; Estrin, Deborah | ACM transactions on information systems. | 2017 Aug; | 30464375 | |
| Model-Based and Model-Free Techniques for Amyotrophic Lateral Sclerosis Diagnostic Prediction and Patient Clustering. | Tang, Ming; Gao, Chao; Goutman, Stephen A; Kalinin, Alexandr; Mukherjee, Bhramar; Guan, Yuanfang; Dinov, Ivo D | Neuroinformatics. | 2018 Nov 20; | 30460455 | |
| A reference set of curated biomedical data and metadata from clinical case reports. | Caufield, J Harry; Zhou, Yijiang; Garlid, Anders O; Setty, Shaun P; Liem, David A; Cao, Quan; Lee, Jessica M; Murali, Sanjana; Spendlove, Sarah; Wang, Wei; Zhang, Li; Sun, Yizhou; Bui, Alex; Hermjakob, Henning; Watson, Karol E; Ping, Peipei | Scientific data. | 2018 Nov 20; | 30457569 | |
| Mutations of the mitochondrial carrier translocase channel subunit TIM22 cause early-onset mitochondrial myopathy. | Pacheu-Grau, David; Callegari, Sylvie; Emperador, Sonia; Thompson, Kyle; Aich, Abhishek; Topol, Sarah E; Spencer, Emily G; McFarland, Robert; Ruiz-Pesini, Eduardo; Torkamani, Ali; Taylor, Robert W; Montoya, Julio; Rehling, Peter | Human molecular genetics. | 2018 12 01; | 30452684 | |
| BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud. | Torre, Denis; Lachmann, Alexander; Ma'ayan, Avi | Cell systems. | 2018 Nov 08; | 30447998 | |
| A Fast Method for Estimating Statistical Power of Multivariate GWAS in Real Case Scenarios: Examples from the Field of Imaging Genetics. | Couvy-Duchesne, Baptiste; Strike, Lachlan T; McMahon, Katie L; de Zubicaray, Greig I; Thompson, Paul M; Martin, Nicholas G; Medland, Sarah E; Wright, Margaret J | Behavior genetics | 2019 01 | 30443694 | |
| Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease. | Tu, Yanshuai; Wen, Chengfeng; Zhang, Wen; Wu, Jianfeng; Zhang, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Reiman, Eric M; Wang, Yalin | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. | 2018 Jul; | 30440425 | |
| Elevated allostatic load early in the course of schizophrenia. | Savransky, Anya; Chiappelli, Joshua; Fisseha, Feven; Wisner, Krista M; Xiaoming, Du; Mirmomen, S Milad; Jones, Aaron D; Adhikari, Bhim M; Bruce, Heather A; Rowland, Laura M; Hong, L Elliot | Translational psychiatry. | 2018 Nov 12; | 30420620 | |
| A conceptual framework for clinicians working with artificial intelligence and health-assistive Smart Homes. | Dermody, Gordana; Fritz, Roschelle | Nursing inquiry. | 2018 Nov 12; | 30417510 | |
| rConverse: Moment by Moment Conversation Detection Using a Mobile Respiration Sensor. | Bari, Rummana; Adams, Roy J; Rahman, Mahbubur; Parsons, Megan Battles; Buder, Eugene H; Kumar, Santosh | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. | 2018 Mar; | 30417165 | |
| Citizen Science for Mining the Biomedical Literature. | Tsueng, Ginger; Nanis, Steven M; Fouquier, Jennifer; Good, Benjamin M; Su, Andrew I | Citizen science : theory and practice. | 2016; | 30416754 | |
| Understanding the Hidden Complexity of Latin American Population Isolates. | Mooney, Jazlyn A; Huber, Christian D; Service, Susan; Sul, Jae Hoon; Marsden, Clare D; Zhang, Zhongyang; Sabatti, Chiara; Ruiz-Linares, Andrés; Bedoya, Gabriel; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes; Freimer, Nelson; Lohmueller, Kirk E | American journal of human genetics. | 2018 11 01; | 30401458 | |
| A Deep Learning Model to Predict a Diagnosis of Alzheimer Disease by Using 18F-FDG PET of the Brain. | Ding, Yiming; Sohn, Jae Ho; Kawczynski, Michael G; Trivedi, Hari; Harnish, Roy; Jenkins, Nathaniel W; Lituiev, Dmytro; Copeland, Timothy P; Aboian, Mariam S; Mari Aparici, Carina; Behr, Spencer C; Flavell, Robert R; Huang, Shih-Ying; Zalocusky, Kelly A; Nardo, Lorenzo; Seo, Youngho; Hawkins, Randall A; Hernandez Pampaloni, Miguel; Hadley, Dexter; Franc, Benjamin L | Radiology. | 2019 Feb; | 30398430 | |
| Estimating the effect size of surgery to improve walking in children with cerebral palsy from retrospective observational clinical data. | Rajagopal, Apoorva; Kidzi?ski, ?ukasz; McGlaughlin, Alec S; Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael H | Scientific reports. | 2018 Nov 05; | 30397268 | |
| The PRIDE database and related tools and resources in 2019: improving support for quantification data. | Perez-Riverol, Yasset; Csordas, Attila; Bai, Jingwen; Bernal-Llinares, Manuel; Hewapathirana, Suresh; Kundu, Deepti J; Inuganti, Avinash; Griss, Johannes; Mayer, Gerhard; Eisenacher, Martin; Pérez, Enrique; Uszkoreit, Julian; Pfeuffer, Julianus; Sachsenberg, Timo; Yilmaz, Sule; Tiwary, Shivani; Cox, Jürgen; Audain, Enrique; Walzer, Mathias; Jarnuczak, Andrew F; Ternent, Tobias; Brazma, Alvis; Vizcaíno, Juan Antonio | Nucleic acids research. | 2019 Jan 08; | 30395289 | |
| Matrix metalloproteinase-12 as an endogenous resolution promoting factor following myocardial infarction. | Mouton, Alan J; Rivera Gonzalez, Osvaldo J; Kaminski, Amanda R; Moore, Edwin T; Lindsey, Merry L | Pharmacological research. | 2018 Nov; | 30394317 | |
| Whole-Genome Alignment and Comparative Annotation. | Armstrong, Joel; Fiddes, Ian T; Diekhans, Mark; Paten, Benedict | Annual review of animal biosciences. | 2019 Feb 15; | 30379572 | |
| Chemistry-Wide Association Studies (CWAS): A Novel Framework for Identifying and Interpreting Structure-Activity Relationships. | Low, Yen S; Alves, Vinicius M; Fourches, Denis; Sedykh, Alexander; Andrade, Carolina Horta; Muratov, Eugene N; Rusyn, Ivan; Tropsha, Alexander | Journal of chemical information and modeling. | 2018 11 26; | 30376324 | |
| Engineering induction of singular neural rosette emergence within hPSC-derived tissues. | Knight, Gavin T; Lundin, Brady F; Iyer, Nisha; Ashton, Lydia Mt; Sethares, William A; Willett, Rebecca M; Ashton, Randolph Scott | eLife | 2018 10 29 | 30371350 | |
| Feasibility and Acceptability of Mobile Phone-Based Auto-Personalized Physical Activity Recommendations for Chronic Pain Self-Management: Pilot Study on Adults. | Rabbi, Mashfiqui; Aung, Min Sh; Gay, Geri; Reid, M Cary; Choudhury, Tanzeem | Journal of medical Internet research. | 2018 Oct 26; | 30368433 | |
| Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms. | Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose | Stroke. | 2018 Sep; | 30354989 | |
| Automated feature selection of predictors in electronic medical records data. | Gronsbell, Jessica; Minnier, Jessica; Yu, Sheng; Liao, Katherine; Cai, Tianxi | Biometrics. | 2019 03; | 30353541 | |
| atSNPInfrastructure, a case study for searching billions of records while providing significant cost savings over cloud providers. | IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum : [proceedings]. IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum. | 2018 May; | 30349760 | ||
| Chromosome assembly of large and complex genomes using multiple references. | Kolmogorov, Mikhail; Armstrong, Joel; Raney, Brian J; Streeter, Ian; Dunn, Matthew; Yang, Fengtang; Odom, Duncan; Flicek, Paul; Keane, Thomas M; Thybert, David; Paten, Benedict; Pham, Son | Genome research. | 2018 11; | 30341161 | |
| Mega-Analysis of Gray Matter Volume in Substance Dependence: General and Substance-Specific Regional Effects. | Mackey, Scott; Allgaier, Nicholas; Chaarani, Bader; Spechler, Philip; Orr, Catherine; Bunn, Janice; Allen, Nicholas B; Alia-Klein, Nelly; Batalla, Albert; Blaine, Sara; Brooks, Samantha; Caparelli, Elisabeth; Chye, Yann Ying; Cousijn, Janna; Dagher, Alain; Desrivieres, Sylvane; Feldstein-Ewing, Sarah; Foxe, John J; Goldstein, Rita Z; Goudriaan, Anna E; Heitzeg, Mary M; Hester, Robert; Hutchison, Kent; Korucuoglu, Ozlem; Li, Chiang-Shan R; London, Edythe; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; May, April; Momenan, Reza; Morales, Angelica; Paulus, Martin P; Pearlson, Godfrey; Rousseau, Marc-Etienne; Salmeron, Betty Jo; Schluter, Renée; Schmaal, Lianne; Schumann, Gunter; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot A; Sinha, Rajita; Solowij, Nadia; Tapert, Susan; Uhlmann, Anne; Veltman, Dick; van Holst, Ruth; Whittle, Sarah; Wright, Margaret J; Yücel, Murat; Zhang, Sheng; Yurgelun-Todd, Deborah; Hibar, Derrek P; Jahanshad, Neda; Evans, Alan; Thompson, Paul M; Glahn, David C; Conrod, Patricia; Garavan, Hugh; ENIGMA Addiction Working Group | The American journal of psychiatry. | 2019 Feb 01; | 30336705 | |
| Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments. | Bacher, Rhonda; Leng, Ning; Chu, Li-Fang; Ni, Zijian; Thomson, James A; Kendziorski, Christina; Stewart, Ron | BMC bioinformatics. | 2018 Oct 16; | 30326833 | |
| Why surveillance of antimicrobial resistance needs to be automated and comprehensive. | O'Brien, Thomas F; Clark, Adam; Peters, Rob; Stelling, John | Journal of global antimicrobial resistance. | 2019 06; | 30326273 | |
| Automated detection of outbreaks of antimicrobial-resistant bacteria in Japan. | Tsutsui, A; Yahara, K; Clark, A; Fujimoto, K; Kawakami, S; Chikumi, H; Iguchi, M; Yagi, T; Baker, M A; O'Brien, T; Stelling, J | The Journal of hospital infection. | 2018 Oct 12; | 30321629 | |
| Logistic regression model training based on the approximate homomorphic encryption. | Kim, Andrey; Song, Yongsoo; Kim, Miran; Lee, Keewoo; Cheon, Jung Hee | BMC medical genomics. | 2018 Oct 11; | 30309349 | |
| Syntactic Patterns Improve Information Extraction for Medical Search. | Patel, Roma; Yang, Yinfei; Marshall, Iain; Nenkova, Ani; Wallace, Byron C | Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting. | 2018 Jun; | 30306147 | |
| A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature. | Nye, Benjamin; Jessy Li, Junyi; Patel, Roma; Yang, Yinfei; Marshall, Iain J; Nenkova, Ani; Wallace, Byron C | Proceedings of the conference. Association for Computational Linguistics. Meeting. | 2018 Jul; | 30305770 | |
| Mapping the Heterogeneous Phenotype of Schizophrenia and Bipolar Disorder Using Normative Models. | Wolfers, Thomas; Doan, Nhat Trung; Kaufmann, Tobias; Alnæs, Dag; Moberget, Torgeir; Agartz, Ingrid; Buitelaar, Jan K; Ueland, Torill; Melle, Ingrid; Franke, Barbara; Andreassen, Ole A; Beckmann, Christian F; Westlye, Lars T; Marquand, Andre F | JAMA psychiatry. | 2018 11 01; | 30304337 | |
| Patchwork of contrasting medication cultures across the USA. | Melamed, Rachel D; Rzhetsky, Andrey | Nature communications. | 2018 10 09; | 30301884 | |
| Typing tumors using pathways selected by somatic evolution. | Wang, Sheng; Ma, Jianzhu; Zhang, Wei; Shen, John Paul; Huang, Justin; Peng, Jian; Ideker, Trey | Nature communications. | 2018 Oct 08; | 30297789 | |
| A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts. | Caufield, John Harry; Liem, David A; Garlid, Anders O; Zhou, Yijiang; Watson, Karol; Bui, Alex A T; Wang, Wei; Ping, Peipei | Journal of visualized experiments : JoVE. | 2018 Sep 20; | 30295669 | |
| Framing the challenges of artificial intelligence in medicine. | Yu, Kun-Hsing; Kohane, Isaac S | BMJ quality & safety. | 2019 03; | 30291179 | |
| Targeted sequencing identifies a missense variant in the BEST3 gene associated with antihypertensive response to hydrochlorothiazide. | Singh, Sonal; Wang, Zhiying; Shahin, Mohamed H; Langaee, Taimour Y; Gong, Yan; Turner, Stephen T; Chapman, Arlene B; Gums, John G; McDonough, Caitrin W; Bailey, Kent R; Beitelshees, Amber L; Cooper-DeHoff, Rhonda M; Scherer, Steve; Boerwinkle, Eric; Johns | Pharmacogenetics and genomics. | 2018 Nov; | 30289819 | |
| mCerebrum: A Mobile Sensing Software Platform for Development and Validation of Digital Biomarkers and Interventions. | Hossain, Syed Monowar; Hnat, Timothy; Saleheen, Nazir; Nasrin, Nusrat Jahan; Noor, Joseph; Ho, Bo-Jhang; Condie, Tyson; Srivastava, Mani; Kumar, Santosh | Proceedings of the ... International Conference on Embedded Networked Sensor Systems. International Conference on Embedded Networked Sensor Systems. | 2017 Nov; | 30288504 | |
| Approximating Isotope Distributions of Biomolecule Fragments. | Goldfarb, Dennis; Lafferty, Michael J; Herring, Laura E; Wang, Wei; Major, Michael B | ACS omega. | 2018 Sep 30; | 30288463 | |
| Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia. | Sønderby, Ida E; Gústafsson, Ómar; Doan, Nhat Trung; Hibar, Derrek P; Martin-Brevet, Sandra; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Michael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas; Blangero, John; Boomsma, Dorret I; Bralten, Janita; Brattbak, Hans-Richard; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Calhoun, Vince; Caspers, Svenja; Cavalleri, Gianpiero; Chen, Chi-Hua; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dale, Anders M; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivières, Sylvane; Donohoe, Gary; Draganski, Bogdan; Ehrlich, Stefan; Espeseth, Thomas; Fisher, Simon E; Franke, Barbara; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans; Groenewold, Nynke A; Haavik, Jan; Håberg, Asta; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Heinz, Andreas; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff, Hilleke E; Ikeda, Masashi; Jahanshad, Neda; Jernigan, Terry; Jockwitz, Christiane; Johansson, Stefan; Jonsdottir, Gudrun A; Jönsson, Erik G; Kahn, Rene; Kaufmann, Tobias; Kelly, Sinead; Kikuchi, Masataka; Knowles, Emma E M; Kolskår, Knut K; Kwok, John B; Hellard, Stephanie Le; Leu, Costin; Liu, Jingyu; Lundervold, Astri J; Lundervold, Arvid; Martin, Nicholas G; Mather, Karen; Mathias, Samuel R; McCormack, Mark; McMahon, Katie L; McRae, Allan; Milaneschi, Yuri; Moreau, Clara; Morris, Derek; Mothersill, David; Mühleisen, Thomas W; Murray, Robin; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel; Paus, Tomas; Pausova, Zdenka; Penninx, Brenda; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Pudas, Sara; Quinlan, Erin; Quintana, Daniel S; Reinbold, Céline S; Marques, Tiago Reis; Reymond, Alexandre; Richard, Genevieve; Rodriguez-Herreros, Borja; Roiz-Santiañez, Roberto; Rokicki, Jarek; Rucker, James; Sachdev, Perminder; Sanders, Anne-Marthe; Sando, Sigrid B; Schmaal, Lianne; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Sisodiya, Sanjay; Steen, Vidar M; Stein, Dan J; Steinberg, Stacy; Strike, Lachlan; Teumer, Alexander; Thalamuthu, Anbu; Tordesillas-Gutierrez, Diana; Turner, Jessica; Ueland, Torill; Uhlmann, Anne; Ulfarsson, Magnus O; van 't Ent, Dennis; van der Meer, Dennis; van Haren, Neeltje E M; Vaskinn, Anja; Vassos, Evangelos; Walters, G Bragi; Wang, Yunpeng; Wen, Wei; Whelan, Christopher D; Wittfeld, Katharina; Wright, Margie; Yamamori, Hidenaga; Zayats, Tetyana; Agartz, Ingrid; Westlye, Lars T; Jacquemont, Sébastien; Djurovic, Srdjan; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul; Andreassen, Ole A; 16p11.2 European Consortium, for the ENIGMA-CNV working group | Molecular psychiatry. | 2020 03; | 30283035 | |
| Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities. | Halilaj, Eni; Rajagopal, Apoorva; Fiterau, Madalina; Hicks, Jennifer L; Hastie, Trevor J; Delp, Scott L | Journal of biomechanics. | 2018 Sep 13; | 30279002 | |
| Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. | Wu, Yue; Hormozdiari, Farhad; Joo, Jong Wha J; Eskin, Eleazar | Journal of computational biology : a journal of computational molecular cell biology. | 2019 Nov; | 30272994 | |
| Hippocampal Shape Maturation in Childhood and Adolescence. | Lynch, Kirsten M; Shi, Yonggang; Toga, Arthur W; Clark, Kristi A; Pediatric Imaging, Neurocognition and Genetics Study | Cerebral cortex (New York, N.Y. : 1991). | 2019 08 14; | 30272143 | |
| Randomization-Based Statistical Inference: A Resampling and Simulation Infrastructure. | Dinov, Ivo D; Palanimalai, Selvam; Khare, Ashwini; Christou, Nicolas | Teaching statistics. | 2018; | 30270947 | |
| Expanding the use of spectral libraries in proteomics. | Deutsch, Eric W; Perez-Riverol, Yasset; Chalkley, Robert J; Wilhelm, Mathias; Tate, Stephen; Sachsenberg, Timo; Walzer, Mathias; Käll, Lukas; Delanghe, Bernard; Böcker, Sebastian; Schymanski, Emma L; Wilmes, Paul; Dorfer, Viktoria; Kuster, Bernhard; Volde | Journal of proteome research. | 2018 Oct 01; | 30270626 | |
| Structure and Protein Interaction-based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17. | Zhang, Chengxin; Wei, Xiaoqiong; Omenn, Gilbert S; Zhang, Yang | Journal of proteome research. | 2018 Sep 28; | 30265558 | |
| Wearables and the medical revolution. | Dunn, Jessilyn; Runge, Ryan; Snyder, Michael | Personalized medicine. | 2018 09; | 30259801 | |
| Genetic risk for schizophrenia and autism, social impairment and developmental pathways to psychosis. | Velthorst, Eva; Froudist-Walsh, Sean; Stahl, Eli; Ruderfer, Douglas; Ivanov, Ilyan; Buxbaum, Joseph; iPSYCH-Broad ASD Group, the IMAGEN consortium | Translational psychiatry. | 2018 Sep 26; | 30258131 | |
| Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data. | Köksal, Ali Sinan; Beck, Kirsten; Cronin, Dylan R; McKenna, Aaron; Camp, Nathan D; Srivastava, Saurabh; MacGilvray, Matthew E; Bodík, Rastislav; Wolf-Yadlin, Alejandro; Fraenkel, Ernest; Fisher, Jasmin; Gitter, Anthony | Cell reports. | 2018 Sep 25; | 30257219 | |
| Smaller hippocampal CA1 subfield volume in posttraumatic stress disorder. | Chen, Lyon W; Sun, Delin; Davis, Sarah L; Haswell, Courtney C; Dennis, Emily L; Swanson, Chelsea A; Whelan, Christopher D; Gutman, Boris; Jahanshad, Neda; Iglesias, Juan Eugenio; Thompson, Paul; Mid-Atlantic MIRECC Workgroup; Wagner, H Ryan; Saemann, Phil | Depression and anxiety. | 2018 Nov; | 30256497 | |
| Associations Between Positron Emission Tomography Amyloid Pathology and Diffusion Tensor Imaging Brain Connectivity in Pre-Clinical Alzheimer's Disease. | Hwang, Seong Jae; Adluru, Nagesh; Kim, Won Hwa; Johnson, Sterling C; Bendlin, Barbara B; Singh, Vikas | Brain connectivity. | 2019 03; | 30255713 | |
| All-night functional magnetic resonance imaging sleep studies. | Moehlman, Thomas M; de Zwart, Jacco A; Chappel-Farley, Miranda G; Liu, Xiao; McClain, Irene B; Chang, Catie; Mandelkow, Hendrik; Özbay, Pinar S; Johnson, Nicholas L; Bieber, Rebecca E; Fernandez, Katharine A; King, Kelly A; Zalewski, Christopher K; Brewer, Carmen C; van Gelderen, Peter; Duyn, Jeff H; Picchioni, Dante | Journal of neuroscience methods. | 2019 Mar 15; | 30243817 | |
| Mapping adolescent reward anticipation, receipt, and prediction error during the monetary incentive delay task. | Cao, Zhipeng; Bennett, Marc; Orr, Catherine; Icke, Ilknur; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Whelan, Robert; IMAGEN Consortium | Human brain mapping. | 2019 01; | 30240509 | |
| Extracellular Matrix in Cardiovascular Pathophysiology. | Bloksgaard, Maria; Lindsey, Merry L; Martinez-Lemus, Luis A | American journal of physiology. Heart and circulatory physiology. | 2018 Sep 21; | 30239231 | |
| Symptom dimensions in obsessive-compulsive disorder as predictors of neurobiology and treatment response. | Thorsen, Anders Lillevik; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile A | Current treatment options in psychiatry. | 2018 Mar; | 30237966 | |
| Flexible and Fast Mapping of Peptides to a Proteome with ProteoMapper. | Mendoza, Luis; Deutsch, Eric W; Sun, Zhi; Campbell, David S; Shteynberg, David D; Moritz, Robert L | Journal of proteome research. | 2018 Sep 28; | 30230343 | |
| AspEm: Embedding Learning by Aspects in Heterogeneous Information Networks. | Shi, Yu; Gui, Huan; Zhu, Qi; Kaplan, Lance; Han, Jiawei | Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. | 2018; | 30221081 | |
| PReP: Path-Based Relevance from a Probabilistic Perspective in Heterogeneous Information Networks. | Shi, Yu; Chan, Po-Wei; Zhuang, Honglei; Gui, Huan; Han, Jiawei | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | 2017 Aug; | 30221026 | |
| Investigating inequities in hospital care among lesbian, gay, bisexual, and transgender (LGBT) individuals using social media. | Hswen, Yulin; Sewalk, Kara C; Alsentzer, Emily; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared B | Social science & medicine (1982). | 2018 10; | 30219749 | |
| 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification. | Kalinin, Alexandr A; Allyn-Feuer, Ari; Ade, Alex; Fon, Gordon-Victor; Meixner, Walter; Dilworth, David; Husain, Syed S; de Wett, Jeffrey R; Higgins, Gerald A; Zheng, Gen; Creekmore, Amy; Wiley, John W; Verdone, James E; Veltri, Robert W; Pienta, Kenneth J; Coffey, Donald S; Athey, Brian D; Dinov, Ivo D | Scientific reports. | ; | 30209281 | |
| A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways. | Lu, Songjian; Fan, Xiaonan; Chen, Lujia; Lu, Xinghua | PloS one. | 2018; | 30208101 | |
| SequencEnG: an Interactive Knowledge Base of Sequencing Techniques. | Zhang, Yi; Manjunath, Mohith; Kim, Yeonsung; Heintz, Joerg; Song, Jun S | Bioinformatics (Oxford, England). | 2018 Sep 08; | 30202870 | |
| Collaborative Problem Solving in an Open-Ended Scientific Discovery Game. | Bauer, Aaron; Popovi?, Zoran | Proceedings of the ACM on human-computer interaction. | 2017 Nov; | 30198019 | |
| Motor neuron loss and neuroinflammation in a model of ?-synuclein-induced neurodegeneration. | Sorrentino, Zachary A; Xia, Yuxing; Funk, Cory; Riffe, Cara J; Rutherford, Nicola J; Ceballos Diaz, Carolina; Sacino, Amanda N; Price, Nathan D; Golde, Todd E; Giasson, Benoit I; Chakrabarty, Paramita | Neurobiology of disease. | 2018 Dec; | 30195075 | |
| The ventromedial prefrontal cortex: a putative locus for trait inattention. | Albaugh, Matthew D; Potter, Alexandra S | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. | 2019 Jan; | 30194422 | |
| Efficacy of Contextually Tailored Suggestions for Physical Activity: A Micro-randomized Optimization Trial of HeartSteps. | Klasnja, Predrag; Smith, Shawna; Seewald, Nicholas J; Lee, Andy; Hall, Kelly; Luers, Brook; Hekler, Eric B; Murphy, Susan A | Annals of behavioral medicine : a publication of the Society of Behavioral Medicine. | 2018 Sep 05; | 30192907 | |
| Mixed Graphical Models for Integrative Causal Analysis with Application to Chronic Lung Disease Diagnosis and Prognosis. | Sedgewick, Andrew J; Buschur, Kristina; Shi, Ivy; Ramsey, Joseph D; Raghu, Vineet K; Manatakis, Dimitris V; Zhang, Yingze; Bon, Jessica; Chandra, Divay; Karoleski, Chad; Sciurba, Frank C; Spirtes, Peter; Glymour, Clark; Benos, Panayiotis V | Bioinformatics (Oxford, England). | 2018 Sep 05; | 30192904 | |
| A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol. | Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Turner, Jessica; Grotegerd, Dominik; Dannlowski, Udo; Kugel, Harald; Engelen, Jennifer; Dietsche, Bruno; Krug, Axel; Kircher, Tilo; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Boedhoe, Premika S W; van der Werf, Ysbrand D; van den Heuvel, Odile A; Ipser, Jonathan; Uhlmann, Anne; Stein, Dan J; Dickie, Erin; Voineskos, Aristotle N; Malhotra, Anil K; Pizzagalli, Fabrizio; Calhoun, Vince D; Waller, Lea; Veer, Ilja M; Walter, Hernik; Buchanan, Robert W; Glahn, David C; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter | Brain imaging and behavior. | ; | 30191514 | |
| Generalized Score Functions for Causal Discovery. | Huang, Biwei; Zhang, Kun; Lin, Yizhu; Schölkopf, Bernhard; Glymour, Clark | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | 2018 Aug; | 30191079 | |
| The conserved protective cyclic AMP-phosphodiesterase function PDE4B is expressed in the adenoma and adjacent normal colonic epithelium of mammals and silenced in colorectal cancer. | Pleiman, Jennifer K; Irving, Amy A; Wang, Zhishi; Toraason, Erik; Clipson, Linda; Dove, William F; Deming, Dustin A; Newton, Michael A | PLoS genetics. | 2018 09; | 30188895 | |
| Using structural MRI to identify bipolar disorders - 13 site machine learning study in 3020 individuals from the ENIGMA Bipolar Disorders Working Group. | Nunes, Abraham; Schnack, Hugo G; Ching, Christopher R K; Agartz, Ingrid; Akudjedu, Theophilus N; Alda, Martin; Alnæs, Dag; Alonso-Lana, Silvia; Bauer, Jochen; Baune, Bernhard T; Bøen, Erlend; Bonnin, Caterina Del Mar; Busatto, Geraldo F; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Chaim-Avancini, Tiffany M; Dannlowski, Udo; Díaz-Zuluaga, Ana M; Dietsche, Bruno; Doan, Nhat Trung; Duchesnay, Edouard; Elvsåshagen, Torbjørn; Emden, Daniel; Eyler, Lisa T; Fatjó-Vilas, Mar; Favre, Pauline; Foley, Sonya F; Fullerton, Janice M; Glahn, David C; Goikolea, Jose M; Grotegerd, Dominik; Hahn, Tim; Henry, Chantal; Hibar, Derrek P; Houenou, Josselin; Howells, Fleur M; Jahanshad, Neda; Kaufmann, Tobias; Kenney, Joanne; Kircher, Tilo T J; Krug, Axel; Lagerberg, Trine V; Lenroot, Rhoshel K; López-Jaramillo, Carlos; Machado-Vieira, Rodrigo; Malt, Ulrik F; McDonald, Colm; Mitchell, Philip B; Mwangi, Benson; Nabulsi, Leila; Opel, Nils; Overs, Bronwyn J; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Redlich, Ronny; Roberts, Gloria; Rosa, Pedro G; Salvador, Raymond; Satterthwaite, Theodore D; Soares, Jair C; Stein, Dan J; Temmingh, Henk S; Trappenberg, Thomas; Uhlmann, Anne; van Haren, Neeltje E M; Vieta, Eduard; Westlye, Lars T; Wolf, Daniel H; Yüksel, Dilara; Zanetti, Marcus V; Andreassen, Ole A; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group | Molecular psychiatry. | 2020 Sep; | 30171211 | |
| Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures. | Wang, Zichen; He, Edward; Sani, Kevin; Jagodnik, Kathleen M; Silverstein, Moshe C; Ma'ayan, Avi | Bioinformatics (Oxford, England). | 2019 Apr 01; | 30169739 | |
| Exogenous CXCL4 Infusion Inhibits Macrophage Phagocytosis by Limiting CD36 Signaling to Enhance Post-myocardial Infarction Cardiac Dilation and Mortality. | Lindsey, Merry L; Jung, Mira; Yabluchanskiy, Andriy; Cannon, Presley L; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; DeLeon-Pennell, Kristine Y; Valerio, Fritz M; Harrison, Courtney L; Ripplinger, Crystal M; Hall, Michael E; Ma, Yonggang | Cardiovascular research. | 2018 Aug 29; | 30169632 | |
| Maturation of the Human Cerebral Cortex During Adolescence: Myelin or Dendritic Arbor? | Patel, Y; Shin, J; Gowland, P A; Pausova, Z; Paus, T; IMAGEN consortium | Cerebral cortex (New York, N.Y. : 1991). | 2019 07 22; | 30169567 | |
| The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. | Bukhari, Syed Ahmad Chan; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Rubelt, Florian; Cheung, Kei-Hoi; Kleinstein, Steven H | Frontiers in immunology. | 2018; | 30166985 | |
| Controlled feature selection and compressive big data analytics: Applications to biomedical and health studies. | Marino, Simeone; Xu, Jiachen; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Dinov, Ivo D | PloS one. | 2018; | 30161148 | |
| Smaller subcortical volume in Parkinson patients with rapid eye movement sleep behavior disorder. | Kamps, Sanne; van den Heuvel, Odile A; van der Werf, Ysbrand D; Berendse, Henk W; Weintraub, Daniel; Vriend, Chris | Brain imaging and behavior. | 2019 Oct; | 30155787 | |
| Extracellular matrix roles in cardiorenal fibrosis: Potential therapeutic targets for CVD and CKD in the elderly. | Toba, Hiroe; Lindsey, Merry L | Pharmacology & therapeutics. | 2018 Aug 25; | 30149103 | |
| Comparison of strategies for scalable causal discovery of latent variable models from mixed data. | Raghu, Vineet K; Ramsey, Joseph D; Morris, Alison; Manatakis, Dimitrios V; Sprites, Peter; Chrysanthis, Panos K; Glymour, Clark; Benos, Panayiotis V | International journal of data science and analytics. | 2018; | 30148202 | |
| HiGlass: web-based visual exploration and analysis of genome interaction maps. | Kerpedjiev, Peter; Abdennur, Nezar; Lekschas, Fritz; McCallum, Chuck; Dinkla, Kasper; Strobelt, Hendrik; Luber, Jacob M; Ouellette, Scott B; Azhir, Alaleh; Kumar, Nikhil; Hwang, Jeewon; Lee, Soohyun; Alver, Burak H; Pfister, Hanspeter; Mirny, Leonid A; Pa | Genome biology. | 2018 08 24; | 30143029 | |
| Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy. | Journal of proteome research. | 2018 Aug 31; | 30141336 | ||
| Scoring Bayesian Networks of Mixed Variables. | Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F | International journal of data science and analytics. | 2018 Aug; | 30140730 | |
| EarBit: Using Wearable Sensors to Detect Eating Episodes in Unconstrained Environments. | Bedri, Abdelkareem; Li, Richard; Haynes, Malcolm; Kosaraju, Raj Prateek; Grover, Ishaan; Prioleau, Temiloluwa; Beh, Min Yan; Goel, Mayank; Starner, Thad; Abowd, Gregory | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. | 2017 Sep; | 30135957 | |
| Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study. | Can, Anil; Rudy, Robert F; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose | Neurology | 2018 09 18 | 30135253 | |
| LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling. | DeLeon-Pennell, Kristine Y; Mouton, Alan J; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L | Basic research in cardiology. | 2018 08 21; | 30132266 | |
| Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative. | Halilaj, E; Le, Y; Hicks, J L; Hastie, T J; Delp, S L | Osteoarthritis and cartilage. | ; | 30130590 | |
| Large Scale Semi-Automated Labeling of Routine Free-Text Clinical Records for Deep Learning. | Trivedi, Hari M; Panahiazar, Maryam; Liang, April; Lituiev, Dmytro; Chang, Peter; Sohn, Jae Ho; Chen, Yunn-Yi; Franc, Benjamin L; Joe, Bonnie; Hadley, Dexter | Journal of digital imaging. | 2019 Feb; | 30128778 | |
| Variation graph toolkit improves read mapping by representing genetic variation in the reference. | Garrison, Erik; Sirén, Jouni; Novak, Adam M; Hickey, Glenn; Eizenga, Jordan M; Dawson, Eric T; Jones, William; Garg, Shilpa; Markello, Charles; Lin, Michael F; Paten, Benedict; Durbin, Richard | Nature biotechnology. | 2018 Oct; | 30125266 | |
| HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS. | Wu, Jianfeng; Zhang, Jie; Shi, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2018 Apr; | 30123414 | |
| COMT Val158Met Polymorphism and Social Impairment Interactively Affect Attention-Deficit Hyperactivity Symptoms in Healthy Adolescents. | Millenet, Sabina K; Nees, Frauke; Heintz, Stefan; Bach, Christiane; Frank, Josef; Vollstädt-Klein, Sabine; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Fröhner, Juliane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaire, Herve; Martinot, Jean-Luc; Martinot, Marie-Laure P; Papadoulos, Dimitri O; Paus, Tomá?; Poustka, Luise; Rietschel, Marcella; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Banaschewski, Tobias; Hohmann, Sarah | Frontiers in genetics. | ; | 30108607 | |
| Distinct brain structure and behavior related to ADHD and conduct disorder traits. | Bayard, Frida; Nymberg Thunell, Charlotte; Abé, Christoph; Almeida, Rita; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; Penttilä, Jani; Kappel, Viola; Grimmer, Yvonne; Fadai, Tahmine; van Noort, Betteke; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Petrovic, Predrag; IMAGEN Consortium | Molecular psychiatry. | 2020 Nov; | 30108313 | |
| Iterative Design of Visual Analytics for a Clinician-in-the-loop Smart Home. | Ghods, Alireza; Caffrey, Kathleen; Lin, Beiyu; Fraga, Kylie; Fritz, Roschelle; Schmitter-Edgecombe, Maureen; Hundhausen, Christopher; Cook, Diane J | IEEE journal of biomedical and health informatics. | 2018 Aug 08; | 30106700 | |
| A neurobiological pathway to smoking in adolescence: TTC12-ANKK1-DRD2 variants and reward response. | Macare, Christine; Ducci, Francesca; Zhang, Yuning; Ruggeri, Barbara; Jia, Tianye; Kaakinen, Marika; Kalsi, Gursharan; Charoen, Pimphen; Casoni, Filippo; Peters, Jan; Bromberg, Uli; Hill, Matthew; Buxton, Jessica; Blakemore, Alexandra; Veijola, Juha; Büchel, Christian; Banaschewski, Tobias; Bokde, Arun L W; Conrod, Patricia; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Martinot, Jean-Luc; Paus, Tomá?; Desrivières, Sylvane; Munafò, Marcus; Järvelin, Marjo-Riitta; Schumann, Gunter; IMAGEN Consortium | European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. | 2018 10; | 30104163 | |
| Linkage of the ACR National Mammography Database to the Network of State Cancer Registries: Proof of Concept Evaluation by the ACR National Mammography Database Committee. | Zuley, Margarita L; Nishikawa, Robert M; Lee, Cindy S; Burnside, Elizabeth; Rosenberg, Robert; Sickles, Edward A; Berg, Wendie; Leung, Jessica; Harvey, Jennifer; Sengupta, Debapriya; Gur, David | Journal of the American College of Radiology : JACR. | 2019 Jan; | 30100161 | |
| Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project. | Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Snyder, Michael; Baker, Mark S; Deutsch, Eric W | Journal of proteome research. | 2018 Aug 23; | 30099871 | |
| Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. | Carass, Aaron; Cuzzocreo, Jennifer L; Han, Shuo; Hernandez-Castillo, Carlos R; Rasser, Paul E; Ganz, Melanie; Beliveau, Vincent; Dolz, Jose; Ben Ayed, Ismail; Desrosiers, Christian; Thyreau, Benjamin; Romero, José E; Coupé, Pierrick; Manjón, José V; Fonov | NeuroImage. | 2018 Dec; | 30099076 | |
| Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. | Meyer, Wynn K; Jamison, Jerrica; Richter, Rebecca; Woods, Stacy E; Partha, Raghavendran; Kowalczyk, Amanda; Kronk, Charles; Chikina, Maria; Bonde, Robert K; Crocker, Daniel E; Gaspard, Joseph; Lanyon, Janet M; Marsillach, Judit; Furlong, Clement E; Clark, Nathan L | Science (New York, N.Y.). | 2018 08 10; | 30093596 | |
| Attention deficit hyperactivity disorder symptoms as antecedents of later psychotic outcomes in 22q11.2 deletion syndrome. | Niarchou, Maria; Chawner, Samuel J R A; Fiksinski, Ania; Vorstman, Jacob A S; Maeder, Johanna; Schneider, Maude; Eliez, Stephan; Armando, Marco; Pontillo, Maria; Vicari, Stefano; McDonald-McGinn, Donna M; Emanuel, Beverly S; Zackai, Elaine H; Bearden, Carrie E; Shashi, Vandana; Hooper, Stephen R; Owen, Michael J; Gur, Raquel E; Wray, Naomi R; van den Bree, Marianne B M; Thapar, Anita; International 22q11.2 Deletion Syndrome Brain and Behavior Consortium | Schizophrenia research. | 2019 02; | 30093352 | |
| Web services for data warehouses: OMOP and PCORnet on i2b2. | Klann, Jeffrey G; Phillips, Lori C; Herrick, Christopher; Joss, Matthew A H; Wagholikar, Kavishwar B; Murphy, Shawn N | Journal of the American Medical Informatics Association : JAMIA. | 2018 10 01; | 30085008 | |
| A tissue-based draft map of the murine MHC class I immunopeptidome. | Schuster, Heiko; Shao, Wenguang; Weiss, Tobias; Pedrioli, Patrick G A; Roth, Patrick; Weller, Michael; Campbell, David S; Deutsch, Eric W; Moritz, Robert L; Planz, Oliver; Rammensee, Hans-Georg; Aebersold, Ruedi; Caron, Etienne | Scientific data. | 2018 08 07; | 30084848 | |
| Network enhancement as a general method to denoise weighted biological networks. | Wang, Bo; Pourshafeie, Armin; Zitnik, Marinka; Zhu, Junjie; Bustamante, Carlos D; Batzoglou, Serafim; Leskovec, Jure | Nature communications. | 2018 08 06; | 30082777 | |
| Mapping and interpreting the dynamic connectivity of the brain. | Chang, Catie; Keilholz, Shella; Miller, Robyn; Woolrich, Mark | NeuroImage. | 2018 10 15; | 30075278 | |
| Examination of the Neural Basis of Psychoticlike Experiences in Adolescence During Reward Processing. | Papanastasiou, Evangelos; Mouchlianitis, Elias; Joyce, Dan W; McGuire, Philip; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Spechler, Philip; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Shergill, Sukhwinder; IMAGEN Consortium | JAMA psychiatry. | 2018 10 01; | 30073329 | |
| Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline. | Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Fox, Peter T; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter | Human brain mapping. | 2018 Dec; | 30052318 | |
| Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling. | Kim, Hosung; Caldairou, Benoit; Bernasconi, Andrea; Bernasconi, Neda | Frontiers in neuroinformatics. | 2018; | 30050423 | |
| OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. | Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi | PLoS computational biology. | 2018 07; | 30048444 | |
| Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging. | Petrov, Dmitry; Gutman, Boris A; Yu, Shih-Hua Julie; van Erp, Theo G M; Turner, Jessica A; Schmaal, Lianne; Veltman, Dick; Wang, Lei; Alpert, Kathryn; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Ching, Christopher R K; Calhoun, Vince; Glahn, David; Satterthwaite, Theodore D; Andreasen, Ole Andreas; Borgwardt, Stefan; Howells, Fleur; Groenewold, Nynke; Voineskos, Aristotle; Radua, Joaquim; Potkin, Steven G; Crespo-Facorro, Benedicto; Tordesillas-Gutiérrez, Diana; Shen, Li; Lebedeva, Irina; Spalletta, Gianfranco; Donohoe, Gary; Kochunov, Peter; Rosa, Pedro G P; James, Anthony; Dannlowski, Udo; Baune, Bernhard T; Aleman, André; Gotlib, Ian H; Walter, Henrik; Walter, Martin; Soares, Jair C; Ehrlich, Stefan; Gur, Ruben C; Doan, N Trung; Agartz, Ingrid; Westlye, Lars T; Harrisberger, Fabienne; Riecher-Rössler, Anita; Uhlmann, Anne; Stein, Dan J; Dickie, Erin W; Pomarol-Clotet, Edith; Fuentes-Claramonte, Paola; Canales-Rodríguez, Erick Jorge; Salvador, Raymond; Huang, Alexander J; Roiz-Santiañez, Roberto; Cong, Shan; Tomyshev, Alexander; Piras, Fabrizio; Vecchio, Daniela; Banaj, Nerisa; Ciullo, Valentina; Hong, Elliot; Busatto, Geraldo; Zanetti, Marcus V; Serpa, Mauricio H; Cervenka, Simon; Kelly, Sinead; Grotegerd, Dominik; Sacchet, Matthew D; Veer, Ilya M; Li, Meng; Wu, Mon-Ju; Irungu, Benson; Walton, Esther; Thompson, Paul M | Machine learning in medical imaging. MLMI (Workshop). | 2017 Sep; | 30035274 | |
| Learning causality and causality-related learning: some recent progress. | Zhang, Kun; Schölkopf, Bernhard; Spirtes, Peter; Glymour, Clark | National science review. | 2018 Jan; | 30034911 | |
| ENIGMA MILITARY BRAIN INJURY: A COORDINATED META-ANALYSIS OF DIFFUSION MRI FROM MULTIPLE COHORTS. | Dennis, Emily L; Wilde, Elisabeth A; Newsome, Mary R; Scheibel, Randall S; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin S C; Drennon, Ann Marie; York, Gerald E; Bigler, Erin D; Abildskov, Tracy J; Taylor, Brian A; Jaramillo, Carlos A; Eapen, Blessen; Belanger, Heather; Gupta, Vikash; Morey, Rajendra; Haswell, Courtney; Levin, Harvey S; Hinds 2nd, Sidney R; Walker, William C; Thompson, Paul M; Tate, David F | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2018 Apr; | 30034577 | |
| Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. | Jang, MiHyun; Patted, Tejal; Gil, Yolanda; Garijo, Daniel; Ratnakar, Varun; Ji, Jie; Wang, Prince; McMahon, Aggie; Thompson, Paul M; Jahanshad, Neda | CEUR workshop proceedings. | 2017 Oct; | 30034319 | |
| Selecting Optimal Subset to release under Differentially Private M-estimators from Hybrid Datasets. | Wang, Meng; Ji, Zhanglong; Kim, Hyeon-Eui; Wang, Shuang; Xiong, Li; Jiang, Xiaoqian | IEEE transactions on knowledge and data engineering. | 2018 Mar 01; | 30034201 | |
| Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans. | Shiroishi, Mark S; Gupta, Vikash; Bigjahan, Bavrina; Cen, Steven Y; Rashid, Faisal; Hwang, Darryl H; Lerner, Alexander; Boyko, Orest B; Liu, Chia-Shang Jason; Law, Meng; Thompson, Paul M; Jahanshad, Neda | Proceedings of SPIE--the International Society for Optical Engineering. | 2017 Oct; | 30034079 | |
| Using Virtual Reality to Improve Performance and User Experience in Manual Correction of MRI Segmentation Errors by Non-experts. | Duncan, Dominique; Garner, Rachael; Zrantchev, Ivan; Ard, Tyler; Newman, Bradley; Saslow, Adam; Wanserski, Emily; Toga, Arthur W | Journal of digital imaging | 2019 02 | 30030766 | |
| Statistical considerations in reporting cardiovascular research. | Lindsey, Merry L; Gray, Gillian A; Wood, Susan K; Curran-Everett, Douglas | American journal of physiology. Heart and circulatory physiology. | 2018 Aug 01; | 30028200 | |
| MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES. | Zhang, Jie; Tu, Yanshuai; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2018 Apr; | 30023040 | |
| Comparison of privacy-protecting analytic and data-sharing methods: A simulation study. | Yoshida, Kazuki; Gruber, Susan; Fireman, Bruce H; Toh, Sengwee | Pharmacoepidemiology and drug safety. | 2018 Sep; | 30022561 | |
| Toward Increasing Engagement in Substance Use Data Collection: Development of the Substance Abuse Research Assistant App and Protocol for a Microrandomized Trial Using Adolescents and Emerging Adults. | Rabbi, Mashfiqui; Philyaw Kotov, Meredith; Cunningham, Rebecca; Bonar, Erin E; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan | JMIR research protocols. | 2018 Jul 18; | 30021714 | |
| Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass. | Wang, Ana Y; Thuy-Boun, Peter S; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W | Journal of proteome research. | 2018 09 07; | 30019906 | |
| HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. | Baheti, Saurabh; Tang, Xiaojia; O'Brien, Daniel R; Chia, Nicholas; Roberts, Lewis R; Nelson, Heidi; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Kocher, Jean-Pierre A; Kalari, Krishna R | BMC bioinformatics. | 2018 Jul 17; | 30016933 | |
| Neural correlates of cognitive function and symptoms in attention-deficit/hyperactivity disorder in adults. | Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Lin, Dongdong; Jiang, Wenhao; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, Jingyu | NeuroImage. Clinical. | 2018; | 30013920 | |
| A synthetic-diploid benchmark for accurate variant-calling evaluation. | Li, Heng; Bloom, Jonathan M; Farjoun, Yossi; Fleharty, Mark; Gauthier, Laura; Neale, Benjamin; MacArthur, Daniel | Nature methods. | 2018 Aug; | 30013044 | |
| CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. | Bukhari, Syed Ahmad Chan; Martínez-Romero, Marcos; O' Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Cheung, Kei-Hoi; Kleinstein, Steven H | BMC bioinformatics. | 2018 Jul 16; | 30012108 | |
| Quantitative temporal analysis of protein dynamics in cardiac remodeling. | McClatchy, Daniel B; Ma, Yuanhui; Liem, David A; Ng, Dominic C M; Ping, Peipei; Yates 3rd, John R | Journal of molecular and cellular cardiology. | 2018 Aug; | 30009778 | |
| SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol. | Jiang, Yichen; Hamer, Jenny; Wang, Chenghong; Jiang, Xiaoqian; Kim, Miran; Song, Yongsoo; Xia, Yuhou; Mohammed, Noman; Sadat, Md Nazmus; Wang, Shuang | IEEE/ACM transactions on computational biology and bioinformatics. | 2019 Jan-Feb; | 29994005 | |
| SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution. | Sadat, Md Nazmus; Al Aziz, Md Momin; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Wang, Shuang | IEEE/ACM transactions on computational biology and bioinformatics. | 2019 Jan-Feb; | 29993695 | |
| Visual Analytics in Deep Learning: An Interrogative Survey for the Next Frontiers. | Hohman, Fred Matthew; Kahng, Minsuk; Pienta, Robert; Chau, Duen Horng | IEEE transactions on visualization and computer graphics. | 2018 Jun 04; | 29993551 | |
| Imaging genetics in neurodevelopmental psychopathology. | Klein, Marieke; van Donkelaar, Marjolein; Verhoef, Ellen; Franke, Barbara | American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. | 2017 07; | 29984470 | |
| A Screening Rule for ?1-Regularized Ising Model Estimation. | Kuang, Zhaobin; Geng, Sinong; Page, David | Advances in neural information processing systems. | 2017 Dec; | 29983538 | |
| Risk Factors for Colistin Resistance among Gram-Negative Rods and Klebsiella pneumoniae Isolates. | Richter, Stefan E; Miller, Loren; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A | Journal of clinical microbiology | 2018 09 | 29976595 | |
| Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. | Saul, Michael C; Blatti, Charles; Yang, Wei; Bukhari, Syed A; Shpigler, Hagai Y; Troy, Joseph M; Seward, Christopher H; Sloofman, Laura; Chandrasekaran, Sriram; Bell, Alison M; Stubbs, Lisa; Robinson, Gene E; Zhao, Sihai D; Sinha, Saurabh | Genes, brain, and behavior. | 2018 Jul 02; | 29968347 | |
| Cortical Brain Abnormalities in 4474 Individuals With Schizophrenia and 5098 Control Subjects via the Enhancing Neuro Imaging Genetics Through Meta Analysis (ENIGMA) Consortium. | van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Bustillo, Juan R; Clark, Vincent P; Agartz, Ingrid; Mueller, Bryon A; Cahn, Wiepke; de Zwarte, Sonja M C; Hulshoff Pol, Hilleke E; Kahn, René S; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Dale, Anders M; Doan, Nhat Trung; Gurholt, Tiril P; Hartberg, Cecilie B; Haukvik, Unn K; Jørgensen, Kjetil N; Lagerberg, Trine V; Melle, Ingrid; Westlye, Lars T; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Zilles, David; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Carr, Vaughan J; Catts, Stanley; Cropley, Vanessa L; Fullerton, Janice M; Green, Melissa J; Henskens, Frans A; Jablensky, Assen; Lenroot, Rhoshel K; Mowry, Bryan J; Michie, Patricia T; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Morris, Derek W; Hong, Elliot; Kochunov, Peter; Beard, Lauren M; Gur, Raquel E; Gur, Ruben C; Satterthwaite, Theodore D; Wolf, Daniel H; Belger, Aysenil; Brown, Gregory G; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; O'Leary, Daniel S; Potkin, Steven G; Preda, Adrian; Voyvodic, James; Lim, Kelvin O; McEwen, Sarah; Yang, Fude; Tan, Yunlong; Tan, Shuping; Wang, Zhiren; Fan, Fengmei; Chen, Jingxu; Xiang, Hong; Tang, Shiyou; Guo, Hua; Wan, Ping; Wei, Dong; Bockholt, Henry J; Ehrlich, Stefan; Wolthusen, Rick P F; King, Margaret D; Shoemaker, Jody M; Sponheim, Scott R; De Haan, Lieuwe; Koenders, Laura; Machielsen, Marise W; van Amelsvoort, Therese; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; McKenna, Peter J; Pomarol-Clotet, Edith; Salvador, Raymond; Corvin, Aiden; Donohoe, Gary; Kelly, Sinead; Whelan, Christopher D; Dickie, Erin W; Rotenberg, David; Voineskos, Aristotle N; Ciufolini, Simone; Radua, Joaquim; Dazzan, Paola; Murray, Robin; Reis Marques, Tiago; Simmons, Andrew; Borgwardt, Stefan; Egloff, Laura; Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Wang, Lei; Jönsson, Erik G; Koops, Sanne; Sommer, Iris E C; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Stephen, Julia M; Kwon, Jun Soo; Yun, Je-Yeon; Cannon, Dara M; McDonald, Colm; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Busatto, Geraldo F; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; Hagenaars, Saskia P; McIntosh, Andrew M; Whalley, Heather C; Lawrie, Stephen M; Knöchel, Christian; Oertel-Knöchel, Viola; Stäblein, Michael; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; McMahon, Agnes; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A | Biological psychiatry. | 2018 May 14; | 29960671 | |
| Prioritizing network communities. | Zitnik, Marinka; Sosi?, Rok; Leskovec, Jure | Nature communications. | 2018 06 29; | 29959323 | |
| SigMat: a classification scheme for gene signature matching. | Xiao, Jinfeng; Blatti, Charles; Sinha, Saurabh | Bioinformatics (Oxford, England). | 2018 Jul 01; | 29950002 | |
| Modeling polypharmacy side effects with graph convolutional networks. | Zitnik, Marinka; Agrawal, Monica; Leskovec, Jure | Bioinformatics (Oxford, England). | 2018 07 01; | 29949996 | |
| Talking the Walk: Perceptions of Neighborhood Characteristics from Users of Open Streets Programs in Latin America and the USA. | Zieff, Susan G; Musselman, Elaine A; Sarmiento, Olga L; Gonzalez, Silvia A; Aguilar-Farias, Nicolas; Winter, Sandra J; Hipp, J Aaron; Quijano, Karoll; King, Abby C | Journal of urban health : bulletin of the New York Academy of Medicine. | 2018 Dec; | 29948785 | |
| Significant concordance of genetic variation that increases both the risk for obsessive-compulsive disorder and the volumes of the nucleus accumbens and putamen. | Hibar, Derrek P; Cheung, Joshua W; Medland, Sarah E; Mufford, Mary S; Jahanshad, Neda; Dalvie, Shareefa; Ramesar, Raj; Stewart, Evelyn; van den Heuvel, Odile A; Pauls, David L; Knowles, James A; Stein, Dan J; Thompson, Paul M; Enhancing Neuro Imaging Genetics through Meta Analysis (ENIGMA) Consortium and International Obsessive Compulsive Disorder Foundation Genetics Collaborative (IOCDF-GC) | The British journal of psychiatry : the journal of mental science. | 2018 Jul; | 29947313 | |
| Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. | Smit, Dirk J A; Wright, Margaret J; Meyers, Jacquelyn L; Martin, Nicholas G; Ho, Yvonne Y W; Malone, Stephen M; Zhang, Jian; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Denys, Damiaan; Hansell, Narelle K; Hottenga, Jouke-Jan; McGue, Matt; van Beijsterveldt, Catharina E M; Jahanshad, Neda; Thompson, Paul M; Whelan, Christopher D; Medland, Sarah E; Porjesz, Bernice; Lacono, William G; Boomsma, Dorret I | Human brain mapping. | 2018 Jun 26; | 29947131 | |
| A design framework and exemplar metrics for FAIRness. | Wilkinson, Mark D; Sansone, Susanna-Assunta; Schultes, Erik; Doorn, Peter; Bonino da Silva Santos, Luiz Olavo; Dumontier, Michel | Scientific data. | 2018 06 26; | 29944145 | |
| Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. | Savage, Jeanne E; Jansen, Philip R; Stringer, Sven; Watanabe, Kyoko; Bryois, Julien; de Leeuw, Christiaan A; Nagel, Mats; Awasthi, Swapnil; Barr, Peter B; Coleman, Jonathan R I; Grasby, Katrina L; Hammerschlag, Anke R; Kaminski, Jakob A; Karlsson, Robert; Krapohl, Eva; Lam, Max; Nygaard, Marianne; Reynolds, Chandra A; Trampush, Joey W; Young, Hannah; Zabaneh, Delilah; Hägg, Sara; Hansell, Narelle K; Karlsson, Ida K; Linnarsson, Sten; Montgomery, Grant W; Muñoz-Manchado, Ana B; Quinlan, Erin B; Schumann, Gunter; Skene, Nathan G; Webb, Bradley T; White, Tonya; Arking, Dan E; Avramopoulos, Dimitrios; Bilder, Robert M; Bitsios, Panos; Burdick, Katherine E; Cannon, Tyrone D; Chiba-Falek, Ornit; Christoforou, Andrea; Cirulli, Elizabeth T; Congdon, Eliza; Corvin, Aiden; Davies, Gail; Deary, Ian J; DeRosse, Pamela; Dickinson, Dwight; Djurovic, Srdjan; Donohoe, Gary; Conley, Emily Drabant; Eriksson, Johan G; Espeseth, Thomas; Freimer, Nelson A; Giakoumaki, Stella; Giegling, Ina; Gill, Michael; Glahn, David C; Hariri, Ahmad R; Hatzimanolis, Alex; Keller, Matthew C; Knowles, Emma; Koltai, Deborah; Konte, Bettina; Lahti, Jari; Le Hellard, Stephanie; Lencz, Todd; Liewald, David C; London, Edythe; Lundervold, Astri J; Malhotra, Anil K; Melle, Ingrid; Morris, Derek; Need, Anna C; Ollier, William; Palotie, Aarno; Payton, Antony; Pendleton, Neil; Poldrack, Russell A; Räikkönen, Katri; Reinvang, Ivar; Roussos, Panos; Rujescu, Dan; Sabb, Fred W; Scult, Matthew A; Smeland, Olav B; Smyrnis, Nikolaos; Starr, John M; Steen, Vidar M; Stefanis, Nikos C; Straub, Richard E; Sundet, Kjetil; Tiemeier, Henning; Voineskos, Aristotle N; Weinberger, Daniel R; Widen, Elisabeth; Yu, Jin; Abecasis, Goncalo; Andreassen, Ole A; Breen, Gerome; Christiansen, Lene; Debrabant, Birgit; Dick, Danielle M; Heinz, Andreas; Hjerling-Leffler, Jens; Ikram, M Arfan; Kendler, Kenneth S; Martin, Nicholas G; Medland, Sarah E; Pedersen, Nancy L; Plomin, Robert; Polderman, Tinca J C; Ripke, Stephan; van der Sluis, Sophie; Sullivan, Patrick F; Vrieze, Scott I; Wright, Margaret J; Posthuma, Danielle | Nature genetics. | 2018 Jul; | 29942086 | |
| Fonduer: Knowledge Base Construction from Richly Formatted Data. | Proceedings. ACM-Sigmod International Conference on Management of Data. | 2018 Jun; | 29937618 | ||
| Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. | Readhead, Ben; Haure-Mirande, Jean-Vianney; Funk, Cory C; Richards, Matthew A; Shannon, Paul; Haroutunian, Vahram; Sano, Mary; Liang, Winnie S; Beckmann, Noam D; Price, Nathan D; Reiman, Eric M; Schadt, Eric E; Ehrlich, Michelle E; Gandy, Sam; Dudley, Joel T | Neuron. | 2018 Jul 11; | 29937276 | |
| Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. | Stathias, Vasileios; Koleti, Amar; Vidovi?, Du?ica; Cooper, Daniel J; Jagodnik, Kathleen M; Terryn, Raymond; Forlin, Michele; Chung, Caty; Torre, Denis; Ayad, Nagi; Medvedovic, Mario; Ma'ayan, Avi; Pillai, Ajay; Schürer, Stephan C | Scientific data. | 2018 Jun 19; | 29917015 | |
| Ventromedial Prefrontal Volume in Adolescence Predicts Hyperactive/Inattentive Symptoms in Adulthood. | Albaugh, Matthew D; Ivanova, Masha; Chaarani, Bader; Orr, Catherine; Allgaier, Nicholas; Althoff, Robert R; D' Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Penttilä, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra S | Cerebral cortex (New York, N.Y. : 1991). | 2019 05 01; | 29912404 | |
| Reg-ulating macrophage infiltration to alter wound healing following myocardial infarction. | Lindsey, Merry L | Cardiovascular research. | 2018 Oct 01; | 29912288 | |
| A Hierarchical Framework for State-Space Matrix Inference and Clustering. | Zuo, Chandler; Chen, Kailei; Hewitt, Kyle J; Bresnick, Emery H; Kele?, Sündüz | The annals of applied statistics. | 2016 Sep; | 29910842 | |
| Causal Discovery from Temporally Aggregated Time Series. | Gong, Mingming; Zhang, Kun; Schölkopf, Bernhard; Glymour, Clark; Tao, Dacheng | Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. | 2017 Aug; | 29899680 | |
| Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation. | Hanson, Casey; Cairns, Junmei; Wang, Liewei; Sinha, Saurabh | Genome research. | 2018 08; | 29898900 | |
| Prompting Technology and Persons With Dementia: The Significance of Context and Communication. | Braley, Rachel; Fritz, Rochelle; Van Son, Catherine R; Schmitter-Edgecombe, Maureen | The Gerontologist | 2019 01 09 | 29897450 | |
| Large-scale mapping of cortical alterations in 22q11.2 deletion syndrome: Convergence with idiopathic psychosis and effects of deletion size. | Sun, Daqiang; Ching, Christopher R K; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Villalon-Reina, Julio E; Qu, Xiaoping; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Vorstman, Jacob; Fiksinski, Ania; Koops, Sanne; Ruparel, Kosha; Roalf, David R; Gur, Raquel E; Schmitt, J Eric; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Bassett, Anne S; Chow, Eva W C; Butcher, Nancy J; Vila-Rodriguez, Fidel; Doherty, Joanne; Cunningham, Adam; van den Bree, Marianne B M; Linden, David E J; Moss, Hayley; Owen, Michael J; Murphy, Kieran C; McDonald-McGinn, Donna M; Emanuel, Beverly; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Bearden, Carrie E | Molecular psychiatry. | 2018 Jun 13; | 29895892 | |
| The initiation of cannabis use in adolescence is predicted by sex-specific psychosocial and neurobiological features. | Spechler, Philip A; Allgaier, Nicholas; Chaarani, Bader; Whelan, Robert; Watts, Richard; Orr, Catherine; Albaugh, Matthew D; D'Alberto, Nicholas; Higgins, Stephen T; Hudson, Kelsey E; Mackey, Scott; Potter, Alexandra; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Althoff, Robert R; Garavan, Hugh; IMAGEN Consortium | The European journal of neuroscience. | 2019 08; | 29889330 | |
| Network-based approaches to examining stress in the adolescent brain. | Ho, Tiffany C; Dennis, Emily L; Thompson, Paul M; Gotlib, Ian H | Neurobiology of stress. | 2018 Feb; | 29888310 | |
| A Crowdsourcing Framework for Medical Data Sets. | Ye, Cheng; Coco, Joseph; Epishova, Anna; Hajaj, Chen; Bogardus, Henry; Novak, Laurie; Denny, Joshua; Vorobeychik, Yevgeniy; Lasko, Thomas; Malin, Bradley; Fabbri, Daniel | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2018; | 29888085 | |
| Utility of Genetic Testing in Addition to Mammography for Determining Risk of Breast Cancer Depends on Patient Age. | Feld, Shara I; Fan, Jun; Yuan, Ming; Wu, Yirong; Woo, Kaitlin M; Alexandridis, Roxana; Burnside, Elizabeth S | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2018; | 29888046 | |
| Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data. | Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Liu, Sijia; Liu, Hongfang; Jiang, Guoqian | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2018; | 29888045 | |
| Real-time Protection of Genomic Data Sharing in Beacon Services. | Bu, Diyue; Wang, Xiaofeng; Tang, Haixu | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2018; | 29888039 | |
| What's in a Note? Unpacking Predictive Value in Clinical Note Representations. | Boag, Willie; Doss, Dustin; Naumann, Tristan; Szolovits, Peter | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2018; | 29888035 | |
| Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation. | Fiddes, Ian T; Armstrong, Joel; Diekhans, Mark; Nachtweide, Stefanie; Kronenberg, Zev N; Underwood, Jason G; Gordon, David; Earl, Dent; Keane, Thomas; Eichler, Evan E; Haussler, David; Stanke, Mario; Paten, Benedict | Genome research. | ; | 29884752 | |
| Multiple Testing of Submatrices of a Precision Matrix with Applications to Identification of Between Pathway Interactions. | Xia, Yin; Cai, Tianxi; Cai, T Tony | Journal of the American Statistical Association. | ; | 29881130 | |
| High-resolution comparative analysis of great ape genomes. | Kronenberg, Zev N; Fiddes, Ian T; Gordon, David; Murali, Shwetha; Cantsilieris, Stuart; Meyerson, Olivia S; Underwood, Jason G; Nelson, Bradley J; Chaisson, Mark J P; Dougherty, Max L; Munson, Katherine M; Hastie, Alex R; Diekhans, Mark; Hormozdiari, Fere | Science (New York, N.Y.). | ; | 29880660 | |
| Predicting Adverse Drug Effects from Literature- and Database-Mined Assertions. | La, Mary K; Sedykh, Alexander; Fourches, Denis; Muratov, Eugene; Tropsha, Alexander | Drug safety. | 2018 Jun 06; | 29876834 | |
| Data Programming: Creating Large Training Sets, Quickly. | Ratner, Alexander; De Sa, Christopher; Wu, Sen; Selsam, Daniel; Ré, Christopher | Advances in neural information processing systems. | 2016 Dec; | 29872252 | |
| Mapping macrophage polarization over the myocardial infarction time continuum. | Mouton, Alan J; DeLeon-Pennell, Kristine Y; Rivera Gonzalez, Osvaldo J; Flynn, Elizabeth R; Freeman, Tom C; Saucerman, Jeffrey J; Garrett, Michael R; Ma, Yonggang; Harmancey, Romain; Lindsey, Merry L | Basic research in cardiology. | 2018 Jun 04; | 29868933 | |
| Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. | Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, Jaideep | IEEE internet computing. | 2018 Mar-Apr; | 29867290 | |
| Acute changes in foot strike pattern and cadence affect running parameters associated with tibial stress fractures. | Yong, Jennifer R; Silder, Amy; Montgomery, Kate L; Fredericson, Michael; Delp, Scott L | Journal of biomechanics. | 2018 Jul 25; | 29866518 | |
| The Added Value of Diffusion-Weighted MRI-Derived Structural Connectome in Evaluating Mild Cognitive Impairment: A Multi-Cohort Validation1. | Wang, Qi; Guo, Lei; Thompson, Paul M; Jack, Clifford R; Dodge, Hiroko; Zhan, Liang; Zhou, Jiayu; Alzheimer?s Disease Neuroimaging Initiative and National Alzheimer?s Coordinating Center | Journal of Alzheimer's disease : JAD. | 2018; | 29865049 | |
| Big data sharing and analysis to advance research in post-traumatic epilepsy. | Duncan, Dominique; Vespa, Paul; Pitkänen, Asla; Braimah, Adebayo; Lapinlampi, Niina; Toga, Arthur W | Neurobiology of disease. | 2018 Jun 01; | 29864492 | |
| Quantifying the Impact of Rare and Ultra-rare Coding Variation across the Phenotypic Spectrum. | Ganna, Andrea; Satterstrom, F Kyle; Zekavat, Seyedeh M; Das, Indraniel; Kurki, Mitja I; Churchhouse, Claire; Alfoldi, Jessica; Martin, Alicia R; Havulinna, Aki S; Byrnes, Andrea; Thompson, Wesley K; Nielsen, Philip R; Karczewski, Konrad J; Saarentaus, Elm | American journal of human genetics. | 2018 Jun 07; | 29861106 | |
| Association between inflammation and systolic blood pressure in RA compared to patients without RA. | Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine P | Arthritis research & therapy. | 2018 Jun 01; | 29855349 | |
| SCOTCH: Secure Counting Of encrypTed genomiC data using a Hybrid approach. | Chenghong, Wang; Jiang, Yichen; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Al Aziz, Md Momin; Sadat, Md Nazmus; Wang, Shuang | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854245 | |
| A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. | Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854240 | |
| Mining Hierarchies and Similarity Clusters from Value Set Repositories. | Peterson, Kevin J; Jiang, Guoqian; Brue, Scott M; Shen, Feichen; Liu, Hongfang | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854206 | |
| Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. | Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark A | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854196 | |
| Framing Electronic Medical Records as Polylingual Documents in Query Expansion. | Huang, Edward W; Wang, Sheng; Lee, Doris Jung-Lin; Zhang, Runshun; Liu, Baoyan; Zhou, Xuezhong; Zhai, ChengXiang | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854161 | |
| Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms. | Can, Anil; Rudy, Robert F; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose | Stroke. | 2018 Jul; | 29844027 | |
| Multi-Descriptor Read Across (MuDRA): A Simple and Transparent Approach for Developing Accurate Quantitative Structure-Activity Relationship Models. | Alves, Vinicius M; Golbraikh, Alexander; Capuzzi, Stephen J; Liu, Kammy; Lam, Wai In; Korn, Daniel Robert; Pozefsky, Diane; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, Alexander | Journal of chemical information and modeling. | 2018 06 25; | 29809005 | |
| eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks. | Clarke, Daniel J B; Kuleshov, Maxim V; Schilder, Brian M; Torre, Denis; Duffy, Mary E; Keenan, Alexandra B; Lachmann, Alexander; Feldmann, Axel S; Gundersen, Gregory W; Silverstein, Moshe C; Wang, Zichen; Ma'ayan, Avi | Nucleic acids research. | 2018 Jul 02; | 29800326 | |
| Progress Toward Cancer Data Ecosystems. | Grossman, Robert L | Cancer journal (Sudbury, Mass.). | 2018 May/Jun; | 29794537 | |
| Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews. | Cheng Ye, M S; Fabbri, Daniel | Journal of biomedical informatics. | ; | 29793071 | |
| A Flow Procedure for Linearization of Genome Sequence Graphs. | Haussler, David; Smuga-Otto, Maciej; Eizenga, Jordan M; Paten, Benedict; Novak, Adam M; Nikitin, Sergei; Zueva, Maria; Miagkov, Dmitrii | Journal of computational biology : a journal of computational molecular cell biology. | 2018 07; | 29792514 | |
| Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). | Lill, Jennie R; van Veelen, Peter A; Tenzer, Stefan; Admon, Arie; Caron, Etienne; Elias, Joshua E; Heck, Albert J R; Marcilla, Miguel; Marino, Fabio; Müller, Markus; Peters, Bjoern; Purcell, Anthony; Sette, Alessandro; Sturm, Theo; Ternette, Nicola; Vizca | Proteomics. | 2018 Jun; | 29791771 | |
| PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. | Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine P | Journal of the American Medical Informatics Association : JAMIA. | 2018 10 01; | 29788308 | |
| Stressful Life Events, ADHD Symptoms, and Brain Structure in Early Adolescence. | Humphreys, Kathryn L; Watts, Emily L; Dennis, Emily L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H | Journal of abnormal child psychology. | 2018 May 21; | 29785533 | |
| Classifying Alzheimer's disease with brain imaging and genetic data using a neural network framework. | Ning, Kaida; Chen, Bo; Sun, Fengzhu; Hobel, Zachary; Zhao, Lu; Matloff, Will; Alzheimer's Disease Neuroimaging Initiative; Toga, Arthur W | Neurobiology of aging. | 2018 Aug; | 29784544 | |
| Weighted SGD for ? p Regression with Randomized Preconditioning. | Yang, Jiyan; Chow, Yin-Lam; Ré, Christopher; Mahoney, Michael W | Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. | 2016 Jan; | 29782626 | |
| I'll Be Back: On the Multiple Lives of Users of a Mobile Activity Tracking Application. | Lin, Zhiyuan; Althoff, Tim; Leskovec, Jure | Proceedings of the ... International World-Wide Web Conference. International WWW Conference. | 2018 Apr; | 29780978 | |
| Modeling Interdependent and Periodic Real-World Action Sequences. | Kurashima, Takeshi; Althoff, Tim; Leskovec, Jure | Proceedings of the ... International World-Wide Web Conference. International WWW Conference. | 2018 Apr; | 29780977 | |
| Modeling Individual Cyclic Variation in Human Behavior. | Pierson, Emma; Althoff, Tim; Leskovec, Jure | Proceedings of the ... International World-Wide Web Conference. International WWW Conference. | 2018 Apr; | 29780976 | |
| The Selective Labels Problem: Evaluating Algorithmic Predictions in the Presence of Unobservables. | Lakkaraju, Himabindu; Kleinberg, Jon; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | 2017 Aug; | 29780658 | |
| Development of an Algorithm to Identify Patients with Physician-Documented Insomnia. | Kartoun, Uri; Aggarwal, Rahul; Beam, Andrew L; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Kohane, Isaac S; Shaw, Stanley Y | Scientific reports. | 2018 May 18; | 29777125 | |
| Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology. | Bae, J Alexander; Mu, Shang; Kim, Jinseop S; Turner, Nicholas L; Tartavull, Ignacio; Kemnitz, Nico; Jordan, Chris S; Norton, Alex D; Silversmith, William M; Prentki, Rachel; Sorek, Marissa; David, Celia; Jones, Devon L; Bland, Doug; Sterling, Amy L R; Park, Jungman; Briggman, Kevin L; Seung, H Sebastian; Eyewirers | Cell. | 2018 05 17; | 29775596 | |
| Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease. | Liem, David A; Murali, Sanjana; Sigdel, Dibakar; Shi, Yu; Wang, Xuan; Shen, Jiaming; Choi, Howard; Caufield, John H; Wang, Wei; Ping, Peipei; Han, JiaWei | American journal of physiology. Heart and circulatory physiology. | 2018 Oct 01; | 29775406 | |
| The Mouse Heart Attack Research Tool 1.0 database. | DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ma, Yonggang; Yabluchanskiy, Andriy; Zamilpa, Rogelio; Chiao, Ying Ann; Cannon, Presley L; Kaplan, Abdullah; Cates, Courtney A; Flynn, Elizabeth R; Halade, Ganesh V; de Castro Brás, Lisandra E; Lindse | American journal of physiology. Heart and circulatory physiology. | 2018 Sep 01; | 29775405 | |
| Local Higher-Order Graph Clustering. | Yin, Hao; Benson, Austin R; Leskovec, Jure; Gleich, David F | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | ; | 29770258 | |
| Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data. | Hallac, David; Vare, Sagar; Boyd, Stephen; Leskovec, Jure | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | ; | 29770257 | |
| Network Inference via the Time-Varying Graphical Lasso. | Hallac, David; Park, Youngsuk; Boyd, Stephen; Leskovec, Jure | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | ; | 29770256 | |
| Snorkel: Rapid Training Data Creation with Weak Supervision. | Ratner, Alexander; Bach, Stephen H; Ehrenberg, Henry; Fries, Jason; Wu, Sen; Ré, Christopher | Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. | ; | 29770249 | |
| Population-Scale Pervasive Health. | Althoff, Tim | IEEE pervasive computing. | Oct-Dec 2017 | 29770105 | |
| Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium. | Kong, Xiang-Zhen; Mathias, Samuel R; Guadalupe, Tulio; ENIGMA Laterality Working Group; Glahn, David C; Franke, Barbara; Crivello, Fabrice; Tzourio-Mazoyer, Nathalie; Fisher, Simon E; Thompson, Paul M; Francks, Clyde | Proceedings of the National Academy of Sciences of the United States of America. | ; | 29764998 | |
| Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. | Grove, Christian; Cain, Scott; Chen, Wen J; Davis, Paul; Harris, Todd; Howe, Kevin L; Kishore, Ranjana; Lee, Raymond; Paulini, Michael; Raciti, Daniela; Tuli, Mary Ann; Van Auken, Kimberly; Williams, Gary; WormBase Consortium | Methods in molecular biology (Clifton, N.J.). | 2018; | 29761466 | |
| ERMrest: A Collaborative Data Catalog with Fine Grain Access Control. | Czajkowski, Karl; Kesselman, Carl; Schuler, Robert | Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. | 2017 Oct; | 29756002 | |
| Experiences with Deriva: An Asset Management Platform for Accelerating eScience. | Bugacov, Alejandro; Czajkowski, Karl; Kesselman, Carl; Kumar, Anoop; Schuler, Robert E; Tangmunarunkit, Hongsuda | Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. | 2017 Oct; | 29756001 | |
| Pharmacovigilance via Baseline Regularization with Large-Scale Longitudinal Observational Data. | Kuang, Zhaobin; Peissig, Peggy; Costa, Vítor Santos; Maclin, Richard; Page, David | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | 2017 Aug; | 29755826 | |
| A Constraint Optimization Approach to Causal Discovery from Subsampled Time Series Data. | Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, David | International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. | 2017 Nov; | 29755201 | |
| HUMAN DECISIONS AND MACHINE PREDICTIONS. | Kleinberg, Jon; Lakkaraju, Himabindu; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil | The quarterly journal of economics. | 2018 Feb 01; | 29755141 | |
| Assigning matrix metalloproteinase roles in ischaemic cardiac remodelling. | Lindsey, Merry L | Nature reviews. Cardiology. | 2018 May 11; | 29752454 | |
| Magnetic resonance spectroscopy of fiber tracts in children with traumatic brain injury: A combined MRS - Diffusion MRI study. | Dennis, Emily L; Babikian, Talin; Alger, Jeffry; Rashid, Faisal; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F | Human brain mapping. | 2018 May 10; | 29749094 | |
| Diverse reprogramming codes for neuronal identity. | Tsunemoto, Rachel; Lee, Sohyon; Sz?cs, Attila; Chubukov, Pavel; Sokolova, Irina; Blanchard, Joel W; Eade, Kevin T; Bruggemann, Jacob; Wu, Chunlei; Torkamani, Ali; Sanna, Pietro Paolo; Baldwin, Kristin K | Nature. | 2018 05; | 29743677 | |
| A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. | Zhao, Yongan; Wang, Xiaofeng; Tang, Haixu | Journal of computational biology : a journal of computational molecular cell biology. | 2018 06; | 29741956 | |
| Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease. | Gao, Chao; Sun, Hanbo; Wang, Tuo; Tang, Ming; Bohnen, Nicolaas I; Müller, Martijn L T M; Herman, Talia; Giladi, Nir; Kalinin, Alexandr; Spino, Cathie; Dauer, William; Hausdorff, Jeffrey M; Dinov, Ivo D | Scientific reports. | 2018 05 08; | 29740058 | |
| Uniform resolution of compact identifiers for biomedical data. | Wimalaratne, Sarala M; Juty, Nick; Kunze, John; Janée, Greg; McMurry, Julie A; Beard, Niall; Jimenez, Rafael; Grethe, Jeffrey S; Hermjakob, Henning; Martone, Maryann E; Clark, Tim | Scientific data. | 2018 05 08; | 29737976 | |
| Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization. | Ponzoni, Luca; Zhang, She; Cheng, Mary Hongying; Bahar, Ivet | Philosophical transactions of the Royal Society of London. Series B, Biological sciences. | 2018 06 19; | 29735731 | |
| Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. | Mulugeta, Lealem; Drach, Andrew; Erdemir, Ahmet; Hunt, C A; Horner, Marc; Ku, Joy P; Myers Jr, Jerry G; Vadigepalli, Rajanikanth; Lytton, William W | Frontiers in neuroinformatics. | 2018; | 29713272 | |
| Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. | Agniel, Denis; Kohane, Isaac S; Weber, Griffin M | BMJ (Clinical research ed.). | 2018 04 30; | 29712648 | |
| Quantifying predictive capability of electronic health records for the most harmful breast cancer. | Wu, Yirong; Fan, Jun; Peissig, Peggy; Berg, Richard; Tafti, Ahmad Pahlavan; Yin, Jie; Yuan, Ming; Page, David; Cox, Jennifer; Burnside, Elizabeth S | Proceedings of SPIE--the International Society for Optical Engineering. | 2018 Feb; | 29706685 | |
| A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. | Scientific reports. | 2018 Apr 26; | 29700343 | ||
| Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine. | Circulation research. | 2018 Apr 27; | 29700073 | ||
| Personal Omics for Precision Health. | Kellogg, Ryan A; Dunn, Jessilyn; Snyder, Michael P | Circulation research. | 2018 04 27; | 29700064 | |
| Deep learning in pharmacogenomics: from gene regulation to patient stratification. | Kalinin, Alexandr A; Higgins, Gerald A; Reamaroon, Narathip; Soroushmehr, Sayedmohammadreza; Allyn-Feuer, Ari; Dinov, Ivo D; Najarian, Kayvan; Athey, Brian D | Pharmacogenomics. | 2018 05; | 29697304 | |
| Testing associations between cannabis use and subcortical volumes in two large population-based samples. | Gillespie, Nathan A; Neale, Michael C; Bates, Timothy C; Eyler, Lisa T; Fennema-Notestine, Christine; Vassileva, Jasmin; Lyons, Michael J; Prom-Wormley, Elizabeth C; McMahon, Katie L; Thompson, Paul M; de Zubicaray, Greig; Hickie, Ian B; McGrath, John J; Strike, Lachlan T; Rentería, Miguel E; Panizzon, Matthew S; Martin, Nicholas G; Franz, Carol E; Kremen, William S; Wright, Margaret J | Addiction (Abingdon, England). | 2018 Apr 24; | 29691937 | |
| Micropublication: incentivizing community curation and placing unpublished data into the public domain. | Raciti, Daniela; Yook, Karen; Harris, Todd W; Schedl, Tim; Sternberg, Paul W | Database : the journal of biological databases and curation. | 2018 01 01; | 29688367 | |
| FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. | Vita, Randi; Overton, James A; Mungall, Christopher J; Sette, Alessandro; Peters, Bjoern | Database : the journal of biological databases and curation. | 2018 01 01; | 29688354 | |
| Multimodal Teaching Analytics: Automated Extraction of Orchestration Graphs from Wearable Sensor Data. | Prieto, Luis P; Sharma, Kshitij; Kidzinski, ?ukasz; Rodríguez-Triana, María Jesús; Dillenbourg, Pierre | Journal of computer assisted learning. | 2018 Apr; | 29686446 | |
| SeleCon: Scalable IoT Device Selection and Control Using Hand Gestures. | Alanwar, Amr; Alzantot, Moustafa; Ho, Bo-Jhang; Martin, Paul; Srivastava, Mani | IoTDI 2017 : 2017 IEEE/ACM Second International Conference on Internet-of-Things Design and Implementation : proceedings : 18-20 April 2017, Pittsburgh, Pennsylvania, USA. IoTDI (Conference) (2nd : 2017 : Pittsburgh, Pa.). | 2017 Apr; | 29683151 | |
| Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation. | Kim, Miran; Song, Yongsoo; Wang, Shuang; Xia, Yuhou; Jiang, Xiaoqian | JMIR medical informatics. | 2018 Apr 17; | 29666041 | |
| Individual differences in stop-related activity are inflated by the adaptive algorithm in the stop signal task. | D'Alberto, Nicholas; Chaarani, Bader; Orr, Catherine A; Spechler, Philip A; Albaugh, Matthew D; Allgaier, Nicholas; Wonnell, Alexander; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Itterman, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Robbins, Trevor W; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh | Human brain mapping. | 2018 Apr 15; | 29656430 | |
| Effects of green tea on miRNA and microbiome of oral epithelium. | Adami, Guy R; Tangney, Christy C; Tang, Jessica L; Zhou, Yalu; Ghaffari, Saba; Naqib, Ankur; Sinha, Saurabh; Green, Stefan J; Schwartz, Joel L | Scientific reports. | 2018 Apr 12; | 29651001 | |
| Whole Brain Magnetic Resonance Spectroscopic Determinants of Functional Outcomes in Pediatric Moderate/Severe Traumatic Brain Injury. | Babikian, Talin; Alger, Jeffry R; Ellis-Blied, Monica U; Giza, Christopher C; Dennis, Emily; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeff; Thompson, Paul M; Asarnow, Robert F | Journal of neurotrauma. | 2018 07 15; | 29649959 | |
| Massive mining of publicly available RNA-seq data from human and mouse. | Lachmann, Alexander; Torre, Denis; Keenan, Alexandra B; Jagodnik, Kathleen M; Lee, Hoyjin J; Wang, Lily; Silverstein, Moshe C; Ma'ayan, Avi | Nature communications. | ; | 29636450 | |
| SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications. | Kalinin, Alexandr A; Palanimalai, Selvam; Dinov, Ivo D | Proceedings of the 2nd Workshop on Human-In-the-Loop Data Analytics. Workshop on Human-In-the-Loop Data Analytics (2nd : 2017 : Chicago, Ill.). | 2017 Apr; | 29630069 | |
| CIDER: Enhancing the Performance of Computational Eyeglasses. | Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, Deepak | Proceedings. Eye Tracking Research & Applications Symposium. | 2016 Mar; | 29629433 | |
| Emu: Engagement Modeling for User Studies. | Ho, Bo-Jhang; Nikzad, Nima; Balaji, Bharathan; Srivastava, Mani | Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). | 2017 Sep; | 29629432 | |
| RSTensorFlow: GPU Enabled TensorFlow for Deep Learning on Commodity Android Devices. | Alzantot, Moustafa; Wang, Yingnan; Ren, Zhengshuang; Srivastava, Mani B | MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. | 2017 Jun; | 29629431 | |
| Using Smart City Technology to Make Healthcare Smarter. | Cook, Diane J; Duncan, Glen; Sprint, Gina; Fritz, Roschelle | Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. | 2018 Apr; | 29628528 | |
| Computer-Aided Discovery and Characterization of Novel Ebola Virus Inhibitors. | Capuzzi, Stephen J; Sun, Wei; Muratov, Eugene N; Martínez-Romero, Carles; He, Shihua; Zhu, Wenjun; Li, Hao; Tawa, Gregory; Fisher, Ethan G; Xu, Miao; Shinn, Paul; Qiu, Xiangguo; García-Sastre, Adolfo; Zheng, Wei; Tropsha, Alexander | Journal of medicinal chemistry. | 2018 04 26; | 29624387 | |
| Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture. | Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose | Stroke. | 2018 May; | 29622625 | |
| Ketamine and ketamine metabolites as novel estrogen receptor ligands: Induction of cytochrome P450 and AMPA glutamate receptor gene expression. | Ho, Ming-Fen; Correia, Cristina; Ingle, James N; Kaddurah-Daouk, Rima; Wang, Liewei; Kaufmann, Scott H; Weinshilboum, Richard M | Biochemical pharmacology. | 2018 Jun; | 29621538 | |
| Content Is King: Databases Preserve the Collective Information of Science. | Yates 3rd, John R | Journal of biomolecular techniques : JBT. | 2018 Apr; | 29618955 | |
| Opportunities and obstacles for deep learning in biology and medicine. | Ching, Travers; Himmelstein, Daniel S; Beaulieu-Jones, Brett K; Kalinin, Alexandr A; Do, Brian T; Way, Gregory P; Ferrero, Enrico; Agapow, Paul-Michael; Zietz, Michael; Hoffman, Michael M; Xie, Wei; Rosen, Gail L; Lengerich, Benjamin J; Israeli, Johnny; L | Journal of the Royal Society, Interface. | 2018 Apr; | 29618526 | |
| Cell-centred meta-analysis reveals baseline predictors of anti-TNF? non-response in biopsy and blood of patients with IBD. | Gaujoux, Renaud; Starosvetsky, Elina; Maimon, Naama; Vallania, Francesco; Bar-Yoseph, Haggai; Pressman, Sigal; Weisshof, Roni; Goren, Idan; Rabinowitz, Keren; Waterman, Matti; Yanai, Henit; Dotan, Iris; Sabo, Edmond; Chowers, Yehuda; Khatri, Purvesh; Shen-Orr, Shai S; Israeli IBD research Network (IIRN) | Gut. | 2019 04; | 29618496 | |
| Magnetic resonance imaging does not reveal structural alterations in the brain of grapheme-color synesthetes. | Dojat, Michel; Pizzagalli, Fabrizio; Hupé, Jean-Michel | PloS one. | 2018; | 29617401 | |
| Presurgical localization and spatial shift of resting state networks in patients with brain metastases. | Ding, Ju-Rong; Zhu, Fangmei; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Thompson, Paul M | Brain imaging and behavior. | 2018 Apr 02; | 29611075 | |
| Structural dynamics is a determinant of the functional significance of missense variants. | Ponzoni, Luca; Bahar, Ivet | Proceedings of the National Academy of Sciences of the United States of America. | 2018 Apr 17; | 29610305 | |
| Implementing Wearable Sensors for Continuous Assessment of Daytime Heart Rate Response in Inpatient Rehabilitation. | Weeks, Douglas L; Sprint, Gina L; Stilwill, Virgeen; Meisen-Vehrs, Amy Lou; Cook, Diane J | Telemedicine journal and e-health : the official journal of the American Telemedicine Association. | 2018 Apr 02; | 29608421 | |
| Binary Classifier Calibration Using an Ensemble of Piecewise Linear Regression Models. | Naeini, Mahdi Pakdaman; Cooper, Gregory F | Knowledge and information systems. | 2018 Jan; | 29606784 | |
| Physical activity is associated with changes in knee cartilage microstructure. | Halilaj, E; Hastie, T J; Gold, G E; Delp, S L | Osteoarthritis and cartilage. | 2018 Jun; | 29605382 | |
| Optimizing Digital Integrated Care via Micro-Randomized Trials. | Walton, Ashley; Nahum-Shani, Inbal; Crosby, Lori; Klasnja, Predrag; Murphy, Susan | Clinical pharmacology and therapeutics. | 2018 Mar 31; | 29604043 | |
| SnapVX: A Network-Based Convex Optimization Solver. | Hallac, David; Wong, Christopher; Diamond, Steven; Sharang, Abhijit; Sosi?, Rok; Boyd, Stephen; Leskovec, Jure | Journal of machine learning research : JMLR. | 2017; | 29599649 | |
| Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines. | Ellrott, Kyle; Bailey, Matthew H; Saksena, Gordon; Covington, Kyle R; Kandoth, Cyriac; Stewart, Chip; Hess, Julian; Ma, Singer; Chiotti, Kami E; McLellan, Michael; Sofia, Heidi J; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li; MC3 Working Group; Cancer Genome Atlas Research Network | Cell systems. | 2018 Mar 28; | 29596782 | |
| Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression. | Wilson, Ander; Zigler, Corwin M; Patel, Chirag J; Dominici, Francesca | Biometrics. | 2018 09; | 29569228 | |
| Genetic Drivers of Pancreatic Islet Function. | Keller, Mark P; Gatti, Daniel M; Schueler, Kathryn L; Rabaglia, Mary E; Stapleton, Donnie S; Simecek, Petr; Vincent, Matthew; Allen, Sadie; Broman, Aimee Teo; Bacher, Rhonda; Kendziorski, Christina; Broman, Karl W; Yandell, Brian S; Churchill, Gary A; Att | Genetics. | 2018 05; | 29567659 | |
| Interaction between striatal volume and DAT1 polymorphism predicts working memory development during adolescence. | Nemmi, F; Nymberg, C; Darki, F; Banaschewski, T; Bokde, A L W; Büchel, C; Flor, H; Frouin, V; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Nees, F; Paus, T; Smolka, M N; Robbins, T W; Schumann, G; Klingberg, T; IMAGEN consortium | Developmental cognitive neuroscience. | 2018 04; | 29567584 | |
| Biomedical informatics and machine learning for clinical genomics. | Diao, James A; Kohane, Isaac S; Manrai, Arjun K | Human molecular genetics. | 2018 May 01; | 29566172 | |
| QSAR-Driven Design and Discovery of Novel Compounds With Antiplasmodial and Transmission Blocking Activities. | Lima, Marilia N N; Melo-Filho, Cleber C; Cassiano, Gustavo C; Neves, Bruno J; Alves, Vinicius M; Braga, Rodolpho C; Cravo, Pedro V L; Muratov, Eugene N; Calit, Juliana; Bargieri, Daniel Y; Costa, Fabio T M; Andrade, Carolina H | Frontiers in pharmacology. | 2018; | 29559909 | |
| PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets. | Martínez-Bartolomé, Salvador; Medina-Aunon, J Alberto; López-García, Miguel Ángel; González-Tejedo, Carmen; Prieto, Gorka; Navajas, Rosana; Salazar-Donate, Emilio; Fernández-Costa, Carolina; Yates 3rd, John R; Albar, Juan Pablo | Journal of proteome research. | 2018 04 06; | 29558135 | |
| Extending the Construct Network of Trait Disinhibition to the Neuroimaging Domain: Validation of a Bridging Scale for Use in the European IMAGEN Project. | Brislin, Sarah J; Patrick, Christopher J; Flor, Herta; Nees, Frauke; Heinrich, Angela; Drislane, Laura E; Yancey, James R; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; van Noort, Betteke; Grimmer, Yvonne; Fadai, Tahmine; Schumann, Gunter; Foell, Jens | Assessment. | 2019 06; | 29557190 | |
| Linear assembly of a human centromere on the Y chromosome. | Jain, Miten; Olsen, Hugh E; Turner, Daniel J; Stoddart, David; Bulazel, Kira V; Paten, Benedict; Haussler, David; Willard, Huntington F; Akeson, Mark; Miga, Karen H | Nature biotechnology. | 2018 Mar 19; | 29553574 | |
| Predicting Daily Activities From Egocentric Images Using Deep Learning. | Castro, Daniel; Hickson, Steven; Bettadapura, Vinay; Thomaz, Edison; Abowd, Gregory; Christensen, Henrik; Essa, Irfan | Proceedings. International Symposium on Wearable Computers. | 2015 Aug; | 29553145 | |
| Developing Optimized Adaptive Interventions in Education. | Almirall, Daniel; Kasari, Connie; McCaffrey, Daniel F; Nahum-Shani, Inbal | Journal of research on educational effectiveness. | 2018; | 29552270 | |
| Emotional Processing in Obsessive-Compulsive Disorder: A Systematic Review and Meta-analysis of 25 Functional Neuroimaging Studies. | Thorsen, Anders Lillevik; Hagland, Pernille; Radua, Joaquim; Mataix-Cols, David; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile A | Biological psychiatry. Cognitive neuroscience and neuroimaging. | 2018 Feb 03; | 29550459 | |
| Adding Reg3? to the acute coronary syndrome prognostic marker list. | Lindsey, Merry L; Mouton, Alan J; Ma, Yonggang | International journal of cardiology. | 2018 05 01; | 29544938 | |
| Anytime Exploration for Multi-armed Bandits using Confidence Information. | Jun, Kwang-Sung; Nowak, Robert | JMLR workshop and conference proceedings. | 2016 Jun; | 29541329 | |
| Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters. | Sweeney, Timothy E; Azad, Tej D; Donato, Michele; Haynes, Winston A; Perumal, Thanneer M; Henao, Ricardo; Bermejo-Martin, Jesús F; Almansa, Raquel; Tamayo, Eduardo; Howrylak, Judith A; Choi, Augustine; Parnell, Grant P; Tang, Benjamin; Nichols, Marshall; Woods, Christopher W; Ginsburg, Geoffrey S; Kingsmore, Stephen F; Omberg, Larsson; Mangravite, Lara M; Wong, Hector R; Tsalik, Ephraim L; Langley, Raymond J; Khatri, Purvesh | Critical care medicine. | 2018 Mar 13; | 29537985 | |
| A Practical Approach for Recognizing Eating Moments with Wrist-Mounted Inertial Sensing. | Thomaz, Edison; Essa, Irfan; Abowd, Gregory D | Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). | 2015 Sep; | 29520397 | |
| Discovery of Causal Models that Contain Latent Variables through Bayesian Scoring of Independence Constraints. | Jabbari, Fattaneh; Ramsey, Joseph; Spirtes, Peter; Cooper, Gregory | Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). | 2017 Sep; | 29520396 | |
| Chronodes: Interactive Multifocus Exploration of Event Sequences. | Polack JR., Peter J; Chen, Shang-Tse; Kahng, Minsuk; DE Barbaro, Kaya; Basole, Rahul; Sharmin, Moushumi; Chau, Duen Horng | ACM transactions on interactive intelligent systems. | 2018 Feb; | 29515937 | |
| RNA expression profiling in sulfamethoxazole-treated patients with a range of in vitro lymphocyte cytotoxicity phenotypes. | Reinhart, Jennifer M; Rose, Warren; Panyard, Daniel J; Newton, Michael A; Liebenstein, Tyler K; Yee, Jeremiah; Trepanier, Lauren A | Pharmacology research & perspectives. | 2018 04; | 29511567 | |
| Susceptibility of brain atrophy toTRIB3in Alzheimer's disease, evidence from functional prioritization in imaging genetics. | Lorenzi, Marco; Altmann, Andre; Gutman, Boris; Wray, Selina; Arber, Charles; Hibar, Derrek P; Jahanshad, Neda; Schott, Jonathan M; Alexander, Daniel C; Thompson, Paul M; Ourselin, Sebastien; Alzheimer?s Disease Neuroimaging Initiative | Proceedings of the National Academy of Sciences of the United States of America. | 2018 Mar 20; | 29511103 | |
| Some methods for heterogeneous treatment effect estimation in high dimensions. | Powers, Scott; Qian, Junyang; Jung, Kenneth; Schuler, Alejandro; Shah, Nigam H; Hastie, Trevor; Tibshirani, Robert | Statistics in medicine. | 2018 May 20; | 29508417 | |
| Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation. | Sadat, Md Nazmus; Jiang, Xiaoqian; Aziz, Md Momin Al; Wang, Shuang; Mohammed, Noman | JMIR medical informatics. | 2018 Mar 05; | 29506966 | |
| Exploring Symmetric and Asymmetric Bimanual Eating Detection with Inertial Sensors on the Wrist. | Thomaz, Edison; Bedri, Abdelkareem; Prioleau, Temiloluwa; Essa, Irfan; Abowd, Gregory D | DigitalBiomarkers'17 : proceedings of the 1st Workshop on Digital Biomarkers : June 23, 2017, Niagara Falls, NY, USA. Workshop on Digital Biomarkers (1st : 2017 : Niagara Falls, N.Y.). | 2017 Jul; | 29505038 | |
| SARA: A Mobile App to Engage Users in Health Data Collection. | Rabbi, Mashfiqui; Philyaw-Kotov, Meredith; Lee, Jinseok; Mansour, Anthony; Dent, Laura; Wang, Xiaolei; Cunningham, Rebecca; Bonar, Erin; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan | Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). | 2017 Sep; | 29503985 | |
| From Pressure to Path: Barometer-based Vehicle Tracking. | Ho, Bo-Jhang; Martin, Paul; Swaminathan, Prashanth; Srivastava, Mani | BuildSys'15 : proceedings of the 2nd ACM International Conference on Embedded Systems for Energy-Efficient Buildings : November 4-5, 2015, Seoul, South Korea. ACM Conference on Embedded Systems for Energy-Efficient Buildings (2nd : 2015.... | 2015 Nov; | 29503981 | |
| Survival models and health sequences. | Dempsey, Walter; McCullagh, Peter | Lifetime data analysis. | 2018 Mar 03; | 29502184 | |
| Neuroimaging of the Injured Pediatric Brain: Methods and New Lessons. | Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F | The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. | ; | 29488436 | |
| Exploring applications of crowdsourcing to cryo-EM. | Bruggemann, Jacob; Lander, Gabriel C; Su, Andrew I | Journal of structural biology. | 2018 Jul; | 29486249 | |
| Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses. | Torre, Denis; Krawczuk, Patrycja; Jagodnik, Kathleen M; Lachmann, Alexander; Wang, Zichen; Wang, Lily; Kuleshov, Maxim V; Ma'ayan, Avi | Scientific data. | 2018 Feb 27; | 29485625 | |
| Comment. | Reiss, Philip T; Goldsmith, Jeff | Journal of the American Statistical Association. | 2017; | 29479124 | |
| Assessing the Practice of Biomedical Ontology Evaluation: Gaps and Opportunities. | Amith, Muhammad F; He, Zhe; Bian, Jiang; Antonio Lossio-Ventura, Juan; Tao, Cui | Journal of biomedical informatics. | 2018 Feb 17; | 29462669 | |
| Superbubbles, Ultrabubbles, and Cacti. | Paten, Benedict; Eizenga, Jordan M; Rosen, Yohei M; Novak, Adam M; Garrison, Erik; Hickey, Glenn | Journal of computational biology : a journal of computational molecular cell biology. | 2018 Feb 20; | 29461862 | |
| Learning Activity Predictors from Sensor Data: Algorithms, Evaluation, and Applications. | Minor, Bryan; Doppa, Janardhan Rao; Cook, Diane J | IEEE transactions on knowledge and data engineering. | 2017 Dec 01; | 29456436 | |
| A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations. | Toor, Jugmohit S; Rao, Arjun A; McShan, Andrew C; Yarmarkovich, Mark; Nerli, Santrupti; Yamaguchi, Karissa; Madejska, Ada A; Nguyen, Son; Tripathi, Sarvind; Maris, John M; Salama, Sofie R; Haussler, David; Sgourakis, Nikolaos G | Frontiers in immunology. | 2018; | 29441070 | |
| Quantitative high-throughput phenotypic screening of pediatric cancer cell lines identifies multiple opportunities for drug repurposing. | Shen, Min; Asawa, Rosita; Zhang, Ya-Qin; Cunningham, Elizabeth; Sun, Hongmao; Tropsha, Alexander; Janzen, William P; Muratov, Eugene N; Capuzzi, Stephen J; Farag, Sherif; Jadhav, Ajit; Blatt, Julie; Simeonov, Anton; Martinez, Natalia J | Oncotarget. | 2018 Jan 12; | 29435139 | |
| Nanopore sequencing and assembly of a human genome with ultra-long reads. | Jain, Miten; Koren, Sergey; Miga, Karen H; Quick, Josh; Rand, Arthur C; Sasani, Thomas A; Tyson, John R; Beggs, Andrew D; Dilthey, Alexander T; Fiddes, Ian T; Malla, Sunir; Marriott, Hannah; Nieto, Tom; O'Grady, Justin; Olsen, Hugh E; Pedersen, Brent S; Rhie, Arang; Richardson, Hollian; Quinlan, Aaron R; Snutch, Terrance P; Tee, Louise; Paten, Benedict; Phillippy, Adam M; Simpson, Jared T; Loman, Nicholas J; Loose, Matthew | Nature biotechnology. | 2018 Jan 29; | 29431738 | |
| Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging. | Kim, Hyunwoo J; Adluru, Nagesh; Suri, Heemanshu; Vemuri, Baba C; Johnson, Sterling C; Singh, Vikas | Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. | 2017 Jul; | 29430166 | |
| Systematic identification of correlates of HIV infection: an X-wide association study. | Patel, Chirag J; Bhattacharya, Jay; Ioannidis, John P A; Bendavid, Eran | AIDS (London, England). | 2018 04 24; | 29424772 | |
| Integrated Theory- and Data-driven Feature Selection in Gene Expression Data Analysis. | Raghu, Vineet K; Ge, Xiaoyu; Chrysanthis, Panos K; Benos, Panayiotis V | Proceedings. International Conference on Data Engineering. | 2017 Apr; | 29422764 | |
| iLid: Low-power Sensing of Fatigue and Drowsiness Measures on a Computational Eyeglass. | Rostaminia, Soha; Mayberry, Addison; Ganesan, Deepak; Marlin, Benjamin; Gummeson, Jeremy | Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. | 2017 Jun; | 29417956 | |
| Online Graph Completion: Multivariate Signal Recovery in Computer Vision. | Kim, Won Hwa; Jalal, Mona; Hwang, Seongjae; Johnson, Sterling C; Singh, Vikas | Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. | 2017 Jul; | 29416294 | |
| The Incremental Multiresolution Matrix Factorization Algorithm. | Ithapu, Vamsi K; Kondor, Risi; Johnson, Sterling C; Singh, Vikas | Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. | 2017 Jul; | 29416293 | |
| Neuroanatomical morphometric characterization of sex differences in youth using statistical learning. | Sepehrband, Farshid; Lynch, Kirsten M; Cabeen, Ryan P; Gonzalez-Zacarias, Clio; Zhao, Lu; D'Arcy, Mike; Kesselman, Carl; Herting, Megan M; Dinov, Ivo D; Toga, Arthur W; Clark, Kristi A | NeuroImage. | 2018 May 15; | 29414494 | |
| The Influence of Study-Level Inference Models and Study Set Size on Coordinate-Based fMRI Meta-Analyses. | Bossier, Han; Seurinck, Ruth; Kühn, Simone; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Martinot, Jean-Luc; Lemaitre, Herve; Paus, Tomá?; Millenet, Sabina; Moerkerke, Beatrijs | Frontiers in neuroscience. | 2017; | 29403344 | |
| Anyone Can Become a Troll: Causes of Trolling Behavior in Online Discussions. | Cheng, Justin; Bernstein, Michael; Danescu-Niculescu-Mizil, Cristian; Leskovec, Jure | CSCW : proceedings of the Conference on Computer-Supported Cooperative Work. Conference on Computer-Supported Cooperative Work. | 2017 Feb-Mar; | 29399664 | |
| Gaussian Quadrature for Kernel Features. | Dao, Tri; De Sa, Christopher; Ré, Christopher | Advances in neural information processing systems. | 2017 Dec; | 29398882 | |
| Understanding and Optimizing Asynchronous Low-Precision Stochastic Gradient Descent. | De Sa, Christopher; Feldman, Matthew; Ré, Christopher; Olukotun, Kunle | Proceedings. International Symposium on Computer Architecture. | 2017 Jun; | 29391770 | |
| Inferring Generative Model Structure with Static Analysis. | Varma, Paroma; He, Bryan; Bajaj, Payal; Banerjee, Imon; Khandwala, Nishith; Rubin, Daniel L; Ré, Christopher | Advances in neural information processing systems. | 2017 Dec; | 29391769 | |
| Benefits of and Barriers to Pharmacogenomics-Guided Treatment for Major Depressive Disorder. | Ahmed, Ahmed T; Weinshilboum, Richard; Frye, Mark A | Clinical pharmacology and therapeutics. | 2018 May; | 29388201 | |
| Two-Sample Tests for High-Dimensional Linear Regression with an Application to Detecting Interactions. | Xia, Yin; Cai, Tianxi; Cai, T Tony | Statistica Sinica. | 2018 Jan; | 29386856 | |
| Statistical tests and identifiability conditions for pooling and analyzing multisite datasets. | Zhou, Hao Henry; Singh, Vikas; Johnson, Sterling C; Wahba, Grace; Alzheimer?s Disease Neuroimaging Initiative | Proceedings of the National Academy of Sciences of the United States of America. | 2018 Feb 13; | 29386387 | |
| The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. | Menschaert, Gerben; Wang, Xiaojing; Jones, Andrew R; Ghali, Fawaz; Fenyö, David; Olexiouk, Volodimir; Zhang, Bing; Deutsch, Eric W; Ternent, Tobias; Vizcaíno, Juan Antonio | Genome biology. | 2018 01 31; | 29386051 | |
| Germline contamination and leakage in whole genome somatic single nucleotide variant detection. | Sendorek, Dorota H; Caloian, Cristian; Ellrott, Kyle; Bare, J Christopher; Yamaguchi, Takafumi N; Ewing, Adam D; Houlahan, Kathleen E; Norman, Thea C; Margolin, Adam A; Stuart, Joshua M; Boutros, Paul C | BMC bioinformatics | 2018 01 31 | 29385983 | |
| Interleukins and their signaling pathways in the Reactome biological pathway database. | Jupe, Steve; Ray, Keith; Roca, Corina Duenas; Varusai, Thawfeek; Shamovsky, Veronica; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning | The Journal of allergy and clinical immunology. | 2018 Apr; | 29378288 | |
| Hippo Cascade Controls Lineage Commitment of Liver Tumors in Mice and Humans. | Zhang, Shanshan; Wang, Jingxiao; Wang, Haichuan; Fan, Lingling; Fan, Biao; Zeng, Billy; Tao, Junyan; Li, Xiaolei; Che, Li; Cigliano, Antonio; Ribback, Silvia; Dombrowski, Frank; Chen, Bin; Cong, Wenming; Wei, Lixin; Calvisi, Diego F; Chen, Xin | The American journal of pathology. | 2018 04; | 29378174 | |
| Reactome graph database: Efficient access to complex pathway data. | Fabregat, Antonio; Korninger, Florian; Viteri, Guilherme; Sidiropoulos, Konstantinos; Marin-Garcia, Pablo; Ping, Peipei; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning | PLoS computational biology. | 2018 01; | 29377902 | |
| Cortical Abnormalities Associated With Pediatric and Adult Obsessive-Compulsive Disorder: Findings From the ENIGMA Obsessive-Compulsive Disorder Working Group. | Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Calvo, Rosa | The American journal of psychiatry. | 2018 05 01; | 29377733 | |
| Cognitive genomics: Searching for the genetic roots of neuropsychological functioning. | Bearden, Carrie E; Glahn, David C | Neuropsychology. | 2017 Nov; | 29376674 | |
| Using Collaborative Simulation Modeling to Develop a Web-Based Tool to Support Policy-Level Decision Making About Breast Cancer Screening Initiation Age. | Burnside, Elizabeth S; Lee, Sandra J; Bennette, Carrie; Near, Aimee M; Alagoz, Oguzhan; Huang, Hui; van den Broek, Jeroen J; Kim, Joo Yeon; Ergun, Mehmet A; van Ravesteyn, Nicolien T; Stout, Natasha K; de Koning, Harry J; Mandelblatt, Jeanne S | MDM policy & practice. | 2017 Jul; | 29376135 | |
| Learning to Compose Domain-Specific Transformations for Data Augmentation. | Ratner, Alexander J; Ehrenberg, Henry R; Hussain, Zeshan; Dunnmon, Jared; Ré, Christopher | Advances in neural information processing systems. | 2017 Dec; | 29375240 | |
| Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 1: From Methodology to Clinical Implementation. | Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, Rasu | Journal of the American College of Radiology : JACR. | 2018 03; | 29366600 | |
| Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 2: From Clinical Implementation to Enterprise. | Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, Rasu | Journal of the American College of Radiology : JACR. | 2018 03; | 29366598 | |
| Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study. | Whelan, Christopher D; Altmann, Andre; Botía, Juan A; Jahanshad, Neda; Hibar, Derrek P; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bartolini, Emanuele; Bergo, Felipe P G; Bernardes, Tauana; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carr, Sarah J; Chen, Jian; Chen, Shuai; Cherubini, Andrea; David, Philippe; Domin, Martin; Foley, Sonya; França, Wendy; Haaker, Gerrit; Isaev, Dmitry; Keller, Simon S; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Langner, Soenke; Lenge, Matteo; Leyden, Kelly M; Liu, Min; Loi, Richard Q; Martin, Pascal; Mascalchi, Mario; Morita, Marcia E; Pariente, Jose C; Rodríguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Yao, Yi; Yasuda, Clarissa L; Zhang, Guohao; Bargalló, Nuria; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris C; Blümcke, Ingmar; Carlson, Chad; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Focke, Niels K; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Kälviäinen, Reetta; Kochunov, Peter; Kwan, Patrick; Labate, Angelo; McDonald, Carrie R; Meletti, Stefano; O'Brien, Terence J; Ourselin, Sebastien; Richardson, Mark P; Striano, Pasquale; Thesen, Thomas; Wiest, Roland; Zhang, Junsong; Vezzani, Annamaria; Ryten, Mina; Thompson, Paul M; Sisodiya, Sanjay M | Brain : a journal of neurology. | 2018 Feb 01; | 29365066 | |
| e wrapper: Operationalizing engagement strategies in mHealth. | Wagner 3rd, Blake; Liu, Elaine; Shaw, Steven D; Iakovlev, Gleb; Zhou, Linlu; Harrington, Christina; Abowd, Gregory; Yoon, Carolyn; Kumar, Santosh; Murphy, Susan; Spring, Bonnie; Nahum-Shani, Inbal | Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). | 2017 Sep; | 29362728 | |
| Co-activation patterns in resting-state fMRI signals. | Liu, Xiao; Zhang, Nanyin; Chang, Catie; Duyn, Jeff H | NeuroImage. | 2018 10 15; | 29355767 | |
| mHealth Visual Discovery Dashboard. | Fang, Dezhi; Hohman, Fred; Polack, Peter; Sarker, Hillol; Kahng, Minsuk; Sharmin, Moushumi; al'Absi, Mustafa; Chau, Duen Horng | Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). | 2017 Sep; | 29354812 | |
| ShapeShop: Towards Understanding Deep Learning Representations via Interactive Experimentation. | Hohman, Fred; Hodas, Nathan; Chau, Duen Horng | Extended abstracts on Human factors in computing systems. CHI Conference. | 2017 May; | 29354810 | |
| Lingual Gyrus Surface Area Is Associated with Anxiety-Depression Severity in Young Adults: A Genetic Clustering Approach. | Couvy-Duchesne, Baptiste; Strike, Lachlan T; de Zubicaray, Greig I; McMahon, Katie L; Thompson, Paul M; Hickie, Ian B; Martin, Nicholas G; Wright, Margaret J | eNeuro. | 2018 Jan-Feb; | 29354681 | |
| Loyalty in Online Communities. | Hamilton, William L; Zhang, Justine; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, Jure | Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media. | 2017 May; | 29354326 | |
| Community Identity and User Engagement in a Multi-Community Landscape. | Zhang, Justine; Hamilton, William L; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, Jure | Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media. | 2017 May; | 29354325 | |
| Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer-associated genetic variant rs4415084. | Zhang, Yi; Manjunath, Mohith; Zhang, Shilu; Chasman, Deborah; Roy, Sushmita; Song, Jun S | Cancer research. | 2018 Jan 19; | 29351903 | |
| Are minor alleles more likely to be risk alleles? | Kido, Takashi; Sikora-Wohlfeld, Weronika; Kawashima, Minae; Kikuchi, Shinichi; Kamatani, Naoyuki; Patwardhan, Anil; Chen, Richard; Sirota, Marina; Kodama, Keiichi; Hadley, Dexter; Butte, Atul J | BMC medical genomics. | 2018 01 19; | 29351777 | |
| Guidelines for authors and reviewers on antibody use in physiology studies. | Brooks, Heddwen L; Lindsey, Merry L | American journal of physiology. Heart and circulatory physiology. | 2018 Apr 01; | 29351459 | |
| Guidelines for measuring cardiac physiology in mice. | Lindsey, Merry L; Kassiri, Zamaneh; Virag, Jitka A I; de Castro Brás, Lisandra E; Scherrer-Crosbie, Marielle | American journal of physiology. Heart and circulatory physiology. | 2018 Apr 01; | 29351456 | |
| Guidelines for experimental models of myocardial ischemia and infarction. | Lindsey, Merry L; Bolli, Roberto; Canty Jr, John M; Du, Xiao-Jun; Frangogiannis, Nikolaos G; Frantz, Stefan; Gourdie, Robert G; Holmes, Jeffrey W; Jones, Steven P; Kloner, Robert A; Lefer, David J; Liao, Ronglih; Murphy, Elizabeth; Ping, Peipei; Przyklenk | American journal of physiology. Heart and circulatory physiology. | 2018 Apr 01; | 29351451 | |
| MIRO: guidelines for minimum information for the reporting of an ontology. | Matentzoglu, Nicolas; Malone, James; Mungall, Chris; Stevens, Robert | Journal of biomedical semantics. | 2018 Jan 18; | 29347969 | |
| Robust Dynamic Risk Prediction with Longitudinal Studies. | Zhou, Qian M; Dai, Wei; Zheng, Yingye; Cai, Tianxi | Statistical theory and related fields. | 2017; | 29335682 | |
| Learning Tree-Structured Detection Cascades for Heterogeneous Networks of Embedded Devices. | Dadkhahi, Hamid; Marlin, Benjamin M | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | 2017 Aug; | 29333328 | |
| A bibliometric review of drug repurposing. | Baker, Nancy C; Ekins, Sean; Williams, Antony J; Tropsha, Alexander | Drug discovery today. | 2018 Mar; | 29330123 | |
| Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups. | Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W | Proteomics. | 2018 Feb; | 29319931 | |
| Standardized Effect Sizes for Preventive Mobile Health Interventions in Micro-randomized Trials. | Luers, Brook; Klasnja, Predrag; Murphy, Susan | Prevention science : the official journal of the Society for Prevention Research. | 2018 Jan 09; | 29318443 | |
| A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth. | Rappoport, Nadav; Toung, Jonathan; Hadley, Dexter; Wong, Ronald J; Fujioka, Kazumichi; Reuter, Jason; Abbott, Charles W; Oh, Sam; Hu, Donglei; Eng, Celeste; Huntsman, Scott; Bodian, Dale L; Niederhuber, John E; Hong, Xiumei; Zhang, Ge; Sikora-Wohfeld, Weronika; Gignoux, Christopher R; Wang, Hui; Oehlert, John; Jelliffe-Pawlowski, Laura L; Gould, Jeffrey B; Darmstadt, Gary L; Wang, Xiaobin; Bustamante, Carlos D; Snyder, Michael P; Ziv, Elad; Patsopoulos, Nikolaos A; Muglia, Louis J; Burchard, Esteban; Shaw, Gary M; O'Brodovich, Hugh M; Stevenson, David K; Butte, Atul J; Sirota, Marina | Scientific reports. | 2018 01 09; | 29317701 | |
| Integrated omics dissection of proteome dynamics during cardiac remodeling. | Lau, Edward; Cao, Quan; Lam, Maggie P Y; Wang, Jie; Ng, Dominic C M; Bleakley, Brian J; Lee, Jessica M; Liem, David A; Wang, Ding; Hermjakob, Henning; Ping, Peipei | Nature communications. | ; | 29317621 | |
| Gut microbiome populations are associated with structure-specific changes in white matter architecture. | Ong, Irene M; Gonzalez, Jose G; McIlwain, Sean J; Sawin, Emily A; Schoen, Andrew J; Adluru, Nagesh; Alexander, Andrew L; Yu, John-Paul J | Translational psychiatry. | 2018 Jan 10; | 29317592 | |
| Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide. | Marshall, Iain J; Noel-Storr, Anna; Kuiper, Joël; Thomas, James; Wallace, Byron C | Research synthesis methods. | ; | 29314757 | |
| Interactive Exploration on Large Genomic Datasets. | Tu, Eric | EECS technical report series. | ; | 29308454 | |
| Hypothesis Testing in Unsupervised Domain Adaptation with Applications in Alzheimer's Disease. | Zhou, Hao Henry; Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas | Advances in neural information processing systems. | 2016; | 29308004 | |
| Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function. | Sallam, Tamer; Sandhu, Jaspreet; Tontonoz, Peter | Circulation research. | 2018 Jan 05; | 29301847 | |
| Chemotext: A Publicly Available Web Server for Mining Drug-Target-Disease Relationships in PubMed. | Capuzzi, Stephen J; Thornton, Thomas E; Liu, Kammy; Baker, Nancy; Lam, Wai In; O'Banion, Colin P; Muratov, Eugene N; Pozefsky, Diane; Tropsha, Alexander | Journal of chemical information and modeling. | ; | 29300482 | |
| Linking temporal medical records using non-protected health information data. | Bonomi, Luca; Jiang, Xiaoqian | Statistical methods in medical research. | 2017 Jan 01; | 29298592 | |
| Building Interoperable FHIR-Based Vocabulary Mapping Services: A Case Study of OHDSI Vocabularies and Mappings. | Jiang, Guoqian; Kiefer, Richard; Prud'hommeaux, Eric; Solbrig, Harold R | Studies in health technology and informatics. | 2017; | 29295408 | |
| A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR. | Jiang, Guoqian; Kiefer, Richard C; Sharma, Deepak K; Prud'hommeaux, Eric; Solbrig, Harold R | Studies in health technology and informatics. | 2017; | 29295227 | |
| Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications. | Hong, Na; Prodduturi, Naresh; Wang, Chen; Jiang, Guoqian | Studies in health technology and informatics. | 2017; | 29295223 | |
| Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. | Amith, Muhammad; Manion, Frank J; Harris, Marcelline R; Zhang, Yaoyun; Xu, Hua; Tao, Cui | Studies in health technology and informatics. | 2017; | 29295217 | |
| Investigating the differential contributions of sex and brain size to gray matter asymmetry. | Kurth, Florian; Thompson, Paul M; Luders, Eileen | Cortex; a journal devoted to the study of the nervous system and behavior. | 2018 Feb; | 29287244 | |
| Proteomic analysis of the cardiac extracellular matrix: clinical research applications. | Lindsey, Merry L; Jung, Mira; Hall, Michael E; DeLeon-Pennell, Kristine Y | Expert review of proteomics. | 2018 Feb; | 29285949 | |
| Neural response to working memory demand predicts neurocognitive deficits in HIV. | Cohen, Ronald A; Siegel, S; Gullett, J M; Porges, E; Woods, A J; Huang, H; Zhu, Y; Tashima, K; Ding, M-Z | Journal of neurovirology. | 2018 Jun; | 29280107 | |
| Center of Excellence for Mobile Sensor Data-to-Knowledge (MD2K). | Kumar, Santosh; Abowd, Gregory; Abraham, William T; al'Absi, Mustafa; Chau, Duen Horng Polo; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Hnat, Timothy; Hossain, Syed Monowar; Ives, Zachary; Kerr, Jacqueline; Marlin, Benjamin M; Murphy, Susan; Rehg, James M; Nahum-Shani, Inbal; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, Dave | IEEE pervasive computing. | 2017 Apr-Jun; | 29276451 | |
| Neural circuitry underlying sustained attention in healthy adolescents and in ADHD symptomatology. | O'Halloran, Laura; Cao, Zhipeng; Ruddy, Kathy; Jollans, Lee; Albaugh, Matthew D; Aleni, Andrea; Potter, Alexandra S; Vahey, Nigel; Banaschewski, Tobias; Hohmann, Sarah; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Kelly, Clare; Whelan, Robert | NeuroImage. | 2018 04 01; | 29274748 | |
| MinION-based long-read sequencing and assembly extends theCaenorhabditis elegansreference genome. | Tyson, John R; O'Neil, Nigel J; Jain, Miten; Olsen, Hugh E; Hieter, Philip; Snutch, Terrance P | Genome research. | 2018 Feb; | 29273626 | |
| SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis. | Magis, Andrew T; Funk, Cory C; Price, Nathan D | IEEE life sciences letters. | 2015 Aug; | 29270443 | |
| Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. | Gutiérrez-Sacristán, Alba; Guedj, Romain; Korodi, Gabor; Stedman, Jason; Furlong, Laura I; Patel, Chirag J; Kohane, Isaac S; Avillach, Paul | Bioinformatics (Oxford, England). | 2017 Dec 18; | 29267850 | |
| A community effort to protect genomic data sharing, collaboration and outsourcing. | Wang, Shuang; Jiang, Xiaoqian; Tang, Haixu; Wang, Xiaofeng; Bu, Diyue; Carey, Knox; Dyke, Stephanie Om; Fox, Dov; Jiang, Chao; Lauter, Kristin; Malin, Bradley; Sofia, Heidi; Telenti, Amalio; Wang, Lei; Wang, Wenhao; Ohno-Machado, Lucila | NPJ genomic medicine. | 2017; | 29263842 | |
| Deep Learning based Classification of FDG-PET Data for Alzheimers Disease Categories. | Singh, Shibani; Srivastava, Anant; Mi, Liang; Caselli, Richard J; Chen, Kewei; Goradia, Dhruman; Reiman, Eric M; Wang, Yalin | Proceedings of SPIE--the International Society for Optical Engineering. | 2017 Oct; | 29263566 | |
| Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. | Glusman, Gustavo; Rose, Peter W; Prli?, Andreas; Dougherty, Jennifer; Duarte, José M; Hoffman, Andrew S; Barton, Geoffrey J; Bendixen, Emøke; Bergquist, Timothy; Bock, Christian; Brunk, Elizabeth; Buljan, Marija; Burley, Stephen K; Cai, Binghuang; Carter, Hannah; Gao, JianJiong; Godzik, Adam; Heuer, Michael; Hicks, Michael; Hrabe, Thomas; Karchin, Rachel; Leman, Julia Koehler; Lane, Lydie; Masica, David L; Mooney, Sean D; Moult, John; Omenn, Gilbert S; Pearl, Frances; Pejaver, Vikas; Reynolds, Sheila M; Rokem, Ariel; Schwede, Torsten; Song, Sicheng; Tilgner, Hagen; Valasatava, Yana; Zhang, Yang; Deutsch, Eric W | Genome medicine. | 2017 Dec 18; | 29254494 | |
| Complete hazard ranking to analyze right-censored data: An ALS survival study. | Huang, Zhengnan; Zhang, Hongjiu; Boss, Jonathan; Goutman, Stephen A; Mukherjee, Bhramar; Dinov, Ivo D; Guan, Yuanfang; Pooled Resource Open-Access ALS Clinical Trials Consortium | PLoS computational biology. | ; | 29253881 | |
| Understanding cardiac extracellular matrix remodeling to develop biomarkers of myocardial infarction outcomes. | Nielsen, Signe Holm; Mouton, Alan J; DeLeon-Pennell, Kristine Y; Genovese, Federica; Karsdal, Morten; Lindsey, Merry L | Matrix biology : journal of the International Society for Matrix Biology. | ; | 29247693 | |
| Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research. | Erdemir, Ahmet; Hunter, Peter J; Holzapfel, Gerhard A; Loew, Leslie M; Middleton, John; Jacobs, Christopher R; Nithiarasu, Perumal; Löhner, Rainlad; Wei, Guowei; Winkelstein, Beth A; Barocas, Victor H; Guilak, Farshid; Ku, Joy P; Hicks, Jennifer L; Delp, Scott L; Sacks, Michael; Weiss, Jeffrey A; Ateshian, Gerard A; Maas, Steve A; McCulloch, Andrew D; Peng, Grace C Y | Journal of biomechanical engineering. | 2018 Feb 01; | 29247253 | |
| Data-Driven Mammography Screening Practices-Reply. | Lee, Cindy S; Sickles, Edward A; Burnside, Elizabeth S | JAMA oncology. | 2017 Dec 14; | 29242927 | |
| Embedding Learning with Events in Heterogeneous Information Networks. | Gui, Huan; Liu, Jialu; Tao, Fangbo; Jiang, Meng; Norick, Brandon; Kaplan, Lance; Han, Jiawei | IEEE transactions on knowledge and data engineering. | 2017 Nov; | 29242698 | |
| Finding Pure Sub-Models for Improved Differentiation of Bi-Factor and Second-Order Models. | Yang, Renjie; Spirtes, Peter; Scheines, Richard; Reise, Steven P; Mansoff, Maxwell | Structural equation modeling : a multidisciplinary journal. | 2017; | 29230085 | |
| An Optimal Transportation based Univariate Neuroimaging Index. | Mi, Liang; Zhang, Wen; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Reiman, Eric M; Gu, Xianfeng; Wang, Yalin | Proceedings. IEEE International Conference on Computer Vision. | 2017; | 29225556 | |
| Action Centered Contextual Bandits. | Greenewald, Kristjan; Tewari, Ambuj; Klasnja, Predrag; Murphy, Susan | Advances in neural information processing systems. | 2017 Dec; | 29225449 | |
| Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure. | P Tafti, Ahmad; Badger, Jonathan; LaRose, Eric; Shirzadi, Ehsan; Mahnke, Andrea; Mayer, John; Ye, Zhan; Page, David; Peissig, Peggy | JMIR medical informatics. | 2017 Dec 08; | 29222076 | |
| VisAGE: Integrating external knowledge into electronic medical record visualization. | Huang, Edward W; Wang, Sheng; Zhai, ChengXiang | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2018; | 29218916 | |
| Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline. | Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2018; | 29218892 | |
| Democratizing data science through data science training. | Van Horn, John Darrell; Fierro, Lily; Kamdar, Jeana; Gordon, Jonathan; Stewart, Crystal; Bhattrai, Avnish; Abe, Sumiko; Lei, Xiaoxiao; O'Driscoll, Caroline; Sinha, Aakanchha; Jain, Priyambada; Burns, Gully; Lerman, Kristina; Ambite, José Luis | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2018; | 29218890 | |
| Large-scale analysis of disease pathways in the human interactome. | Agrawal, Monica; Zitnik, Marinka; Leskovec, Jure | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2018; | 29218874 | |
| Smaller Hippocampal Volume in Posttraumatic Stress Disorder: A Multisite ENIGMA-PGC Study: Subcortical Volumetry Results From Posttraumatic Stress Disorder Consortia. | Logue, Mark W; van Rooij, Sanne J H; Dennis, Emily L; Davis, Sarah L; Hayes, Jasmeet P; Stevens, Jennifer S; Densmore, Maria; Haswell, Courtney C; Ipser, Jonathan; Koch, Saskia B J; Korgaonkar, Mayuresh; Lebois, Lauren A M; Peverill, Matthew; Baker, Justin T; Boedhoe, Premika S W; Frijling, Jessie L; Gruber, Staci A; Harpaz-Rotem, Ilan; Jahanshad, Neda; Koopowitz, Sheri; Levy, Ifat; Nawijn, Laura; O'Connor, Lauren; Olff, Miranda; Salat, David H; Sheridan, Margaret A; Spielberg, Jeffrey M; van Zuiden, Mirjam; Winternitz, Sherry R; Wolff, Jonathan D; Wolf, Erika J; Wang, Xin; Wrocklage, Kristen; Abdallah, Chadi G; Bryant, Richard A; Geuze, Elbert; Jovanovic, Tanja; Kaufman, Milissa L; King, Anthony P; Krystal, John H; Lagopoulos, Jim; Bennett, Maxwell; Lanius, Ruth; Liberzon, Israel; McGlinchey, Regina E; McLaughlin, Katie A; Milberg, William P; Miller, Mark W; Ressler, Kerry J; Veltman, Dick J; Stein, Dan J; Thomaes, Kathleen; Thompson, Paul M; Morey, Rajendra A | Biological psychiatry. | 2018 Feb 01; | 29217296 | |
| KAT2A coupled with the ?-KGDH complex acts as a histone H3 succinyltransferase. | Wang, Yugang; Guo, Yusong R; Liu, Ke; Yin, Zheng; Liu, Rui; Xia, Yan; Tan, Lin; Yang, Peiying; Lee, Jong-Ho; Li, Xin-Jian; Hawke, David; Zheng, Yanhua; Qian, Xu; Lyu, Jianxin; He, Jie; Xing, Dongming; Tao, Yizhi Jane; Lu, Zhimin | Nature. | 2017 12 14; | 29211711 | |
| Reproducibility, sharing and progress in nanomaterial databases. | Tropsha, Alexander; Mills, Karmann C; Hickey, Anthony J | Nature nanotechnology | 2017 12 06 | 29209007 | |
| Development and application of two semi-automated tools for targeted medical product surveillance in a distributed data network. | Connolly, John G; Wang, Shirley V; Fuller, Candace C; Toh, Sengwee; Panozzo, Catherine A; Cocoros, Noelle; Zhou, Meijia; Gagne, Joshua J; Maro, Judith C | Current epidemiology reports. | 2017 Dec; | 29204333 | |
| Estimating Effects of Dynamic Treatment Strategies in Pharmacoepidemiologic Studies with Time-varying Confounding: A Primer. | Li, Xiaojuan; Young, Jessica G; Toh, Sengwee | Current epidemiology reports. | 2017 Dec; | 29204332 | |
| Pharmacoepidemiology in the era of real-world evidence. | Toh, Sengwee | Current epidemiology reports. | 2017 Dec; | 29204331 | |
| Estimating bounds on causal effects in high-dimensional and possibly confounded systems. | Malinsky, Daniel; Spirtes, Peter | International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. | 2017 Sep; | 29203954 | |
| APPROXIMATING PRINCIPAL GENETIC COMPONENTS OF SUBCORTICAL SHAPE. | Gutman, Boris A; Pizzagalli, Fabrizio; Jahanshad, Neda; Wright, Margaret J; McMahon, Katie L; de Zubicaray, Greig; Thompson, Paul M | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017; | 29201284 | |
| A COMPARISON OF NETWORK DEFINITIONS FOR DETECTING SEX DIFFERENCES IN BRAIN CONNECTIVITY USING SUPPORT VECTOR MACHINES. | Hafzalla, George W; Ragothaman, Anjanibhargavi; Faskowitz, Joshua; Jahanshad, Neda; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Braskie, Meredith N; Prasad, Gautam; Thompson, Paul M | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017; | 29201283 | |
| THE IMPACT OF MATCHING FUNCTIONAL ON ATROPHY MEASUREMENT FROM GEODESIC SHOOTING IN DIFFEOMORPHISMS. | Fleishman, Greg M; Thompson, Paul M | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017; | 29201282 | |
| Graph theoretical approaches towards understanding differences in frontoparietal and default mode networks in Autism. | Riedel, Brandalyn C; Jahanshad, Neda; Thompson, Paul M | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017; | 29201281 | |
| A NETWORK APPROACH TO EXAMINING INJURY SEVERITY IN PEDIATRIC TBI. | Dennis, Emily L; Rashid, Faisal; Jahanshad, Neda; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul M | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017; | 29201280 | |
| MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS. | Dennis, Emily L; Rashid, Faisal; Faskowitz, Josh; Jin, Yan; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Hickie, Ian B; Wright, Margaret J; Jahanshad, Neda; Thompson, Paul M | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017; | 29201279 | |
| The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations. | Keenan, Alexandra B; Jenkins, Sherry L; Jagodnik, Kathleen M; Koplev, Simon; He, Edward; Torre, Denis; Wang, Zichen; Dohlman, Anders B; Silverstein, Moshe C; Lachmann, Alexander; Kuleshov, Maxim V; Ma'ayan, Avi; Stathias, Vasileios; Terryn, Raymond; Cooper, Daniel; Forlin, Michele; Koleti, Amar; Vidovic, Dusica; Chung, Caty; Schürer, Stephan C; Vasiliauskas, Jouzas; Pilarczyk, Marcin; Shamsaei, Behrouz; Fazel, Mehdi; Ren, Yan; Niu, Wen; Clark, Nicholas A; White, Shana; Mahi, Naim; Zhang, Lixia; Kouril, Michal; Reichard, John F; Sivaganesan, Siva; Medvedovic, Mario; Meller, Jaroslaw; Koch, Rick J; Birtwistle, Marc R; Iyengar, Ravi; Sobie, Eric A; Azeloglu, Evren U; Kaye, Julia; Osterloh, Jeannette; Haston, Kelly; Kalra, Jaslin; Finkbiener, Steve; Li, Jonathan; Milani, Pamela; Adam, Miriam; Escalante-Chong, Renan; Sachs, Karen; Lenail, Alex; Ramamoorthy, Divya; Fraenkel, Ernest; Daigle, Gavin; Hussain, Uzma; Coye, Alyssa; Rothstein, Jeffrey; Sareen, Dhruv; Ornelas, Loren; Banuelos, Maria; Mandefro, Berhan; Ho, Ritchie; Svendsen, Clive N; Lim, Ryan G; Stocksdale, Jennifer; Casale, Malcolm S; Thompson, Terri G; Wu, Jie; Thompson, Leslie M; Dardov, Victoria; Venkatraman, Vidya; Matlock, Andrea; Van Eyk, Jennifer E; Jaffe, Jacob D; Papanastasiou, Malvina; Subramanian, Aravind; Golub, Todd R; Erickson, Sean D; Fallahi-Sichani, Mohammad; Hafner, Marc; Gray, Nathanael S; Lin, Jia-Ren; Mills, Caitlin E; Muhlich, Jeremy L; Niepel, Mario; Shamu, Caroline E; Williams, Elizabeth H; Wrobel, David; Sorger, Peter K; Heiser, Laura M; Gray, Joe W; Korkola, James E; Mills, Gordon B; LaBarge, Mark; Feiler, Heidi S; Dane, Mark A; Bucher, Elmar; Nederlof, Michel; Sudar, Damir; Gross, Sean; Kilburn, David F; Smith, Rebecca; Devlin, Kaylyn; Margolis, Ron; Derr, Leslie; Lee, Albert; Pillai, Ajay | Cell systems. | 2017 Nov 24; | 29199020 | |
| Methylation of OPRL1 mediates the effect of psychosocial stress on binge drinking in adolescents. | Ruggeri, Barbara; Macare, Christine; Stopponi, Serena; Jia, Tianye; Carvalho, Fabiana M; Robert, Gabriel; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Sommer, Wolfgang H; Bakalkin, Georgy; Ciccocioppo, Roberto; Schumann, Gunter; IMAGEN consortium | Journal of child psychology and psychiatry, and allied disciplines. | 2017 Dec 02; | 29197086 | |
| Preterm birth leads to hyper-reactive cognitive control processing and poor white matter organization in adulthood. | Olsen, Alexander; Dennis, Emily L; Evensen, Kari Anne I; Husby Hollund, Ingrid Marie; Løhaugen, Gro C C; Thompson, Paul M; Brubakk, Ann-Mari; Eikenes, Live; Håberg, Asta K | NeuroImage. | ; | 29191480 | |
| Reactome diagram viewer: data structures and strategies to boost performance. | Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Marin-Garcia, Pablo; Ping, Peipei; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning | Bioinformatics (Oxford, England). | ; | 29186351 | |
| Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies. | Kochunov, Peter; Dickie, Erin W; Viviano, Joseph D; Turner, Jessica; Kingsley, Peter B; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Fieremans, Els; Novikov, Dmitry; Veraart, Jelle; Hong, Elliot L; Malhotra, Anil K; Buchanan, Robert W; Chavez, Sofia; Voineskos, Aristotle N | Human brain mapping. | 2018 Feb; | 29181875 | |
| Neuroimaging genomics in psychiatry-a translational approach. | Mufford, Mary S; Stein, Dan J; Dalvie, Shareefa; Groenewold, Nynke A; Thompson, Paul M; Jahanshad, Neda | Genome medicine. | 2017 Nov 27; | 29179742 | |
| A volumetric conformal mapping approach for clustering white matter fibers in the brain. | Gupta, Vikash; Prasad, Gautam; Thompson, Paul | Spectral and shape analysis in medical imaging : first International Workshop, SeSAMI 2016, held in conjunction with MICCAI 2016, Athens, Greece, October 21, 2016 : revised selected papers. SeSAMI (Workshop) (1st : 2016 : Athens, Greece). | 2016 Oct; | 29177252 | |
| A Visual Analytics Approach to Understanding Care Process Variation and Conformance. | Basole, Rahul C; Park, Hyunwoo; Gupta, Mayank; Braunstein, Mark L; Chau, Duen Horng; Thompson, Michael | Proceedings of the 2015 Workshop on Visual Analytics in Healthcare. | 2015 Oct; | 29177250 | |
| Diffusion MRI in pediatric brain injury. | Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F | Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery. | 2017 Oct; | 29149383 | |
| A Continuous Model of Cortical Connectivity. | Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul M | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2016 Oct; | 29147688 | |
| Multi-modal Registration Improves Group Discrimination in Pediatric Traumatic Brain Injury. | Dennis, Emily L; Rashid, Faisal; Villalon-Reina, Julio; Prasad, Gautam; Faskowitz, Joshua; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul M | Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries : second International Workshop, BrainLes 2016, with the challenges on BRATS, ISLES and mTOP 2016, held in conjunction with MICCAI 2016, Athens, Greece, Octob.... | 2016 Oct; | 29147687 | |
| Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure. | Chen, Chi-Hua; Wang, Yunpeng; Lo, Min-Tzu; Schork, Andrew; Fan, Chun-Chieh; Holland, Dominic; Kauppi, Karolina; Smeland, Olav B; Djurovic, Srdjan; Sanyal, Nilotpal; Hibar, Derrek P; Thompson, Paul M; Thompson, Wesley K; Andreassen, Ole A; Dale, Anders M | Scientific reports. | ; | 29147026 | |
| Cortical and Subcortical Brain Morphometry Differences Between Patients With Autism Spectrum Disorder and Healthy Individuals Across the Lifespan: Results From the ENIGMA ASD Working Group. | van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Busatto, Geraldo F; Calderoni, Sara; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis Souza; Durston, Sarah; Ecker, Christine; Fair, Damien; Fedor, Jennifer; Fitzgerald, Jackie; Freitag, Christine M; Gallagher, Louise; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; Lerch, Jason; Luna, Beatriz; Martinho, Mauricio Moller; McGrath, Jane; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot; Thompson, Paul M; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Buitelaar, Jan K | The American journal of psychiatry. | 2018 04 01; | 29145754 | |
| Altered connectivity patterns among resting state networks in patients with ischemic white matter lesions. | Ding, Ju-Rong; Ding, Xin; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Wang, Qingsong; Thompson, Paul | Brain imaging and behavior. | 2018 Oct; | 29134612 | |
| Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics. | Ding, Michael Q; Chen, Lujia; Cooper, Gregory F; Young, Jonathan D; Lu, Xinghua | Molecular cancer research : MCR. | 2017 Nov 13; | 29133589 | |
| Enabling phenotypic big data with PheNorm. | Yu, Sheng; Ma, Yumeng; Gronsbell, Jessica; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Liao, Katherine P; Cai, Tianxi | Journal of the American Medical Informatics Association : JAMIA. | 2018 01 01; | 29126253 | |
| An empirical Bayes test for allelic-imbalance detection in ChIP-seq. | Zhang, Qi; Keles, Sündüz | Biostatistics (Oxford, England). | ; | 29126153 | |
| Privacy-preserving techniques of genomic data-a survey. | Aziz, Md Momin Al; Sadat, Md Nazmus; Alhadidi, Dima; Wang, Shuang; Jiang, Xiaoqian; Brown, Cheryl L; Mohammed, Noman | Briefings in bioinformatics. | 2019 05 21; | 29121240 | |
| Cardiac macrophage biology in the steady-state heart, the aging heart, and following myocardial infarction. | Ma, Yonggang; Mouton, Alan J; Lindsey, Merry L | Translational research : the journal of laboratory and clinical medicine. | 2018 01; | 29106912 | |
| Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase. | O'Banion, Colin P; Priestman, Melanie A; Hughes, Robert M; Herring, Laura E; Capuzzi, Stephen J; Lawrence, David S | Cell chemical biology. | 2017 Oct 25; | 29104065 | |
| Pharmacogenomics: Precision Medicine and Drug Response. | Weinshilboum, Richard M; Wang, Liewei | Mayo Clinic proceedings. | 2017 Nov; | 29101939 | |
| Aggregating and Predicting Sequence Labels from Crowd Annotations. | Nguyen, An T; Wallace, Byron C; Li, Junyi Jessy; Nenkova, Ani; Lease, Matthew | Proceedings of the conference. Association for Computational Linguistics. Meeting. | 2017; | 29093611 | |
| Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images. | Spagnolo, Daniel M; Al-Kofahi, Yousef; Zhu, Peihong; Lezon, Timothy R; Gough, Albert; Stern, Andrew M; Lee, Adrian V; Ginty, Fiona; Sarachan, Brion; Taylor, D Lansing; Chennubhotla, S Chakra | Cancer research. | 2017 Nov 01; | 29092944 | |
| A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0). | Kuderna, Lukas F K; Tomlinson, Chad; Hillier, LaDeana W; Tran, Annabel; Fiddes, Ian T; Armstrong, Joel; Laayouni, Hafid; Gordon, David; Huddleston, John; Garcia Perez, Raquel; Povolotskaya, Inna; Serres Armero, Aitor; Gómez Garrido, Jèssica; Ho, Daniel; Ribeca, Paolo; Alioto, Tyler; Green, Richard E; Paten, Benedict; Navarro, Arcadi; Betranpetit, Jaume; Herrero, Javier; Eichler, Evan E; Sharp, Andrew J; Feuk, Lars; Warren, Wesley C; Marques-Bonet, Tomas | GigaScience. | 2017 Nov 01; | 29092041 | |
| To Three or not to Three: Improving Human Computation Game Onboarding with a Three-Star System. | Gaston, Jacqueline; Cooper, Seth | Proceedings of the SIGCHI conference on human factors in computing systems . CHI Conference. | 2017; | 29082386 | |
| WormBase 2017: molting into a new stage. | Lee, Raymond Y N; Howe, Kevin L; Harris, Todd W; Arnaboldi, Valerio; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Davis, Paul; Gao, Sibyl; Grove, Christian; Kishore, Ranjana; Muller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Raciti, D | Nucleic acids research. | 2018 Jan 04; | 29069413 | |
| Imagining the ''open'' university: Sharing scholarship to improve research and education. | McKiernan, Erin C | PLoS biology. | 2017 Oct; | 29065148 | |
| An Assessment of Imaging Informatics for Precision Medicine in Cancer. | Chennubhotla, C; Clarke, L P; Fedorov, A; Foran, D; Harris, G; Helton, E; Nordstrom, R; Prior, F; Rubin, D; Saltz, J H; Shalley, E; Sharma, A | Yearbook of medical informatics. | 2017 Aug; | 29063549 | |
| Grappling with the Future Use of Big Data for Translational Medicine and Clinical Care. | Murphy, S; Castro, V; Mandl, K | Yearbook of medical informatics. | 2017 Aug; | 29063545 | |
| Translational MRI Volumetry with NeuroQuant: Effects of Version and Normative Data on Relationships with Memory Performance in Healthy Older Adults and Patients with Mild Cognitive Impairment. | Stelmokas, Julija; Yassay, Lance; Giordani, Bruno; Dodge, Hiroko H; Dinov, Ivo D; Bhaumik, Arijit; Sathian, K; Hampstead, Benjamin M | Journal of Alzheimer's disease : JAD. | 2017; | 29060939 | |
| PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals. | Wenzel, Sally E; Tyurina, Yulia Y; Zhao, Jinming; St Croix, Claudette M; Dar, Haider H; Mao, Gaowei; Tyurin, Vladimir A; Anthonymuthu, Tamil S; Kapralov, Alexandr A; Amoscato, Andrew A; Mikulska-Ruminska, Karolina; Shrivastava, Indira H; Kenny, Elizabeth M; Yang, Qin; Rosenbaum, Joel C; Sparvero, Louis J; Emlet, David R; Wen, Xiaoyan; Minami, Yoshinori; Qu, Feng; Watkins, Simon C; Holman, Theodore R; VanDemark, Andrew P; Kellum, John A; Bahar, Ivet; Bay?r, Hülya; Kagan, Valerian E | Cell. | 2017 Oct 19; | 29053969 | |
| Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach. | Wang, Shulei; Arena, Ellen T; Eliceiri, Kevin W; Yuan, Ming | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. | 2018 Feb; | 29053465 | |
| Pharmacogenomic Discovery to Function and Mechanism: Breast Cancer as a Case Study. | Wang, Liewei; Ingle, James; Weinshilboum, Richard | Clinical pharmacology and therapeutics. | 2018 Feb; | 29052219 | |
| Variation in a range of mTOR-related genes associates with intracranial volume and intellectual disability. | Reijnders, M R F; Kousi, M; van Woerden, G M; Klein, M; Bralten, J; Mancini, G M S; van Essen, T; Proietti-Onori, M; Smeets, E E J; van Gastel, M; Stegmann, A P A; Stevens, S J C; Lelieveld, S H; Gilissen, C; Pfundt, R; Tan, P L; Kleefstra, T; Franke, B; Elgersma, Y; Katsanis, N; Brunner, H G | Nature communications. | 2017 Oct 20; | 29051493 | |
| Using the Telephone Interview for Cognitive Status and Telephone Montreal Cognitive Assessment for Evaluating Vascular Cognitive Impairment: Promising Call or Put on Hold? | Cohen, Ronald A; Alexander, Gene E | Stroke. | 2017 11; | 29042491 | |
| Widespread white matter microstructural differences in schizophrenia across 4322 individuals: results from the ENIGMA Schizophrenia DTI Working Group. | Kelly, S; Jahanshad, N; Zalesky, A; Kochunov, P; Agartz, I; Alloza, C; Andreassen, O A; Arango, C; Banaj, N; Bouix, S; Bousman, C A; Brouwer, R M; Bruggemann, J; Bustillo, J; Cahn, W; Calhoun, V; Cannon, D; Carr, V; Catts, S; Chen, J; Chen, J-X; Chen, X; Chiapponi, C; Cho, Kl K; Ciullo, V; Corvin, A S; Crespo-Facorro, B; Cropley, V; De Rossi, P; Diaz-Caneja, C M; Dickie, E W; Ehrlich, S; Fan, F-M; Faskowitz, J; Fatouros-Bergman, H; Flyckt, L; Ford, J M; Fouche, J-P; Fukunaga, M; Gill, M; Glahn, D C; Gollub, R; Goudzwaard, E D; Guo, H; Gur, R E; Gur, R C; Gurholt, T P; Hashimoto, R; Hatton, S N; Henskens, F A; Hibar, D P; Hickie, I B; Hong, L E; Horacek, J; Howells, F M; Hulshoff Pol, H E; Hyde, C L; Isaev, D; Jablensky, A; Jansen, P R; Janssen, J; Jönsson, E G; Jung, L A; Kahn, R S; Kikinis, Z; Liu, K; Klauser, P; Knöchel, C; Kubicki, M; Lagopoulos, J; Langen, C; Lawrie, S; Lenroot, R K; Lim, K O; Lopez-Jaramillo, C; Lyall, A; Magnotta, V; Mandl, R C W; Mathalon, D H; McCarley, R W; McCarthy-Jones, S; McDonald, C; McEwen, S; McIntosh, A; Melicher, T; Mesholam-Gately, R I; Michie, P T; Mowry, B; Mueller, B A; Newell, D T; O'Donnell, P; Oertel-Knöchel, V; Oestreich, L; Paciga, S A; Pantelis, C; Pasternak, O; Pearlson, G; Pellicano, G R; Pereira, A; Pineda Zapata, J; Piras, F; Potkin, S G; Preda, A; Rasser, P E; Roalf, D R; Roiz, R; Roos, A; Rotenberg, D; Satterthwaite, T D; Savadjiev, P; Schall, U; Scott, R J; Seal, M L; Seidman, L J; Shannon Weickert, C; Whelan, C D; Shenton, M E; Kwon, J S; Spalletta, G; Spaniel, F; Sprooten, E; Stäblein, M; Stein, D J; Sundram, S; Tan, Y; Tan, S; Tang, S; Temmingh, H S; Westlye, L T; Tønnesen, S; Tordesillas-Gutierrez, D; Doan, N T; Vaidya, J; van Haren, N E M; Vargas, C D; Vecchio, D; Velakoulis, D; Voineskos, A; Voyvodic, J Q; Wang, Z; Wan, P; Wei, D; Weickert, T W; Whalley, H; White, T; Whitford, T J; Wojcik, J D; Xiang, H; Xie, Z; Yamamori, H; Yang, F; Yao, N; Zhang, G; Zhao, J; van Erp, T G M; Turner, J; Thompson, P M; Donohoe, G | Molecular psychiatry. | 2018 05; | 29038599 | |
| County-level assessment of United States kindergarten vaccination rates for measles mumps rubella (MMR) for the 2014-2015 school year. | Kluberg, Sheryl A; McGinnis, Denise P; Hswen, Yulin; Majumder, Maimuna S; Santillana, Mauricio; Brownstein, John S | Vaccine. | ; | 29037574 | |
| Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies. | Wang, Meng; Ji, Zhanglong; Wang, Shuang; Kim, Jihoon; Yang, Hai; Jiang, Xiaoqian; Ohno-Machado, Lucila | Bioinformatics (Oxford, England). | 2017 Dec 01; | 29036461 | |
| Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling. | Partha, Raghavendran; Chauhan, Bharesh K; Ferreira, Zelia; Robinson, Joseph D; Lathrop, Kira; Nischal, Ken K; Chikina, Maria; Clark, Nathan L | eLife. | 2017 Oct 16; | 29035697 | |
| TeachEnG: a Teaching Engine for Genomics. | Kim, Minji; Kim, Yeonsung; Qian, Lei; Song, Jun S | Bioinformatics (Oxford, England). | 2017 Oct 15; | 29028264 | |
| A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC. | Campbell, Walter S; Karlsson, Daniel; Vreeman, Daniel J; Lazenby, Audrey J; Talmon, Geoffrey A; Campbell, James R | Journal of the American Medical Informatics Association : JAMIA. | 2017 Sep 13; | 29024958 | |
| Landscape of X chromosome inactivation across human tissues. | Tukiainen, Taru; Villani, Alexandra-Chloé; Yen, Angela; Rivas, Manuel A; Marshall, Jamie L; Satija, Rahul; Aguirre, Matt; Gauthier, Laura; Fleharty, Mark; Kirby, Andrew; Cummings, Beryl B; Castel, Stephane E; Karczewski, Konrad J; Aguet, François; Byrnes, Andrea; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Lappalainen, Tuuli; Regev, Aviv; Ardlie, Kristin G; Hacohen, Nir; MacArthur, Daniel G | Nature. | 2017 Oct 11; | 29022598 | |
| Genetic effects on gene expression across human tissues. | GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Lead analysts:; Laboratory, Data Analysis &Coordinating Center (LDACC):; NIH program management:; Biospecimen collection:; Pathology:; eQTL manuscript working group:; Battle, Alexis; Brown, Christopher D; Engelhardt, Barbara E; Montgomery, Stephen B | Nature. | 2017 Oct 11; | 29022597 | |
| Dynamic landscape and regulation of RNA editing in mammals. | Tan, Meng How; Li, Qin; Shanmugam, Raghuvaran; Piskol, Robert; Kohler, Jennefer; Young, Amy N; Liu, Kaiwen Ivy; Zhang, Rui; Ramaswami, Gokul; Ariyoshi, Kentaro; Gupte, Ankita; Keegan, Liam P; George, Cyril X; Ramu, Avinash; Huang, Ni; Pollina, Elizabeth A; Leeman, Dena S; Rustighi, Alessandra; Goh, Y P Sharon; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Chawla, Ajay; Del Sal, Giannino; Peltz, Gary; Brunet, Anne; Conrad, Donald F; Samuel, Charles E; O'Connell, Mary A; Walkley, Carl R; Nishikura, Kazuko; Li, Jin Billy | Nature. | 2017 Oct 11; | 29022589 | |
| Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis. | Yang, Fan; Wang, Jiebiao; GTEx Consortium; Pierce, Brandon L; Chen, Lin S | Genome research. | 2017 Nov; | 29021290 | |
| Co-expression networks reveal the tissue-specific regulation of transcription and splicing. | Saha, Ashis; Kim, Yungil; Gewirtz, Ariel D H; Jo, Brian; Gao, Chuan; McDowell, Ian C; GTEx Consortium; Engelhardt, Barbara E; Battle, Alexis | Genome research. | 2017 Nov; | 29021288 | |
| Ultrafast Comparison of Personal Genomes via Precomputed Genome Fingerprints. | Glusman, Gustavo; Mauldin, Denise E; Hood, Leroy E; Robinson, Max | Frontiers in genetics. | 2017; | 29018478 | |
| Association between anti-citrullinated fibrinogen antibodies and coronary artery disease in rheumatoid arthritis. | Hejblum, Boris P; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Sparks, Jeffrey A; Sokolove, Jeremy; Cai, Tianxi; Liao, Katherine P | Arthritis care & research. | 2017 Oct 09; | 28992379 | |
| How Gamification Affects Physical Activity: Large-scale Analysis of Walking Challenges in a Mobile Application. | Shameli, Ali; Althoff, Tim; Saberi, Amin; Leskovec, Jure | Proceedings of the ... International World-Wide Web Conference. International WWW Conference. | 2017 Apr; | 28990011 | |
| Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma. | Young, Jonathan D; Cai, Chunhui; Lu, Xinghua | BMC bioinformatics. | 2017 Oct 03; | 28984190 | |
| Applying family analyses to electronic health records to facilitate genetic research. | Huang, Xiayuan; Elston, Robert C; Rosa, Guilherme J; Mayer, John; Ye, Zhan; Kitchner, Terrie; Brilliant, Murray H; Page, David; Hebbring, Scott J; Stegle, Oliver | Bioinformatics (Oxford, England). | 2018 Feb 15; | 28968884 | |
| Structural Neuroimaging of Anorexia Nervosa: Future Directions in the Quest for Mechanisms Underlying Dynamic Alterations. | King, Joseph A; Frank, Guido K W; Thompson, Paul M; Ehrlich, Stefan | Biological psychiatry. | ; | 28967386 | |
| IPI59: An Actionable Biomarker to Improve Treatment Response in Serous Ovarian Carcinoma Patients. | Choi, J; Ye, S; Eng, K H; Korthauer, K; Bradley, W H; Rader, J S; Kendziorski, C | Statistics in biosciences. | 2017 Jun; | 28966695 | |
| Causal Discovery from Nonstationary/Heterogeneous Data: Skeleton Estimation and Orientation Determination. | Zhang, Kun; Huang, Biwei; Zhang, Jiji; Glymour, Clark; Schölkopf, Bernhard | IJCAI : proceedings of the conference. | 2017 Aug; | 28966540 | |
| Objective measurement of function following lumbar spinal stenosis decompression reveals improved functional capacity with stagnant real-life physical activity. | Smuck, Matthew; Muaremi, Amir; Zheng, Patricia; Norden, Justin; Sinha, Aman; Hu, Richard; Tomkins-Lane, Christy | The spine journal : official journal of the North American Spine Society. | 2018 Jan; | 28962914 | |
| Citizen science applied to building healthier community environments: advancing the field through shared construct and measurement development. | Hinckson, Erica; Schneider, Margaret; Winter, Sandra J; Stone, Emily; Puhan, Milo; Stathi, Afroditi; Porter, Michelle M; Gardiner, Paul A; Dos Santos, Daniela Lopes; Wolff, Andrea; King, Abby C | The international journal of behavioral nutrition and physical activity. | 2017 Sep 29; | 28962580 | |
| EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING. | Zhang, Jie; Fan, Yonghui; Li, Qingyang; Thompson, Paul M; Ye, Jieping; Wang, Yalin | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017 Apr; | 28959379 | |
| Algorithmic Advances and Applications from RECOMB 2017. | Cell systems. | 2017 Sep 27; | 28957652 | ||
| GraphSpace: stimulating interdisciplinary collaborations in network biology. | Bharadwaj, Aditya; Singh, Divit P; Ritz, Anna; Tegge, Allison N; Poirel, Christopher L; Kraikivski, Pavel; Adames, Neil; Luther, Kurt; Kale, Shiv D; Peccoud, Jean; Tyson, John J; Murali, T M | Bioinformatics (Oxford, England). | 2017 Oct 01; | 28957495 | |
| Optimizing Open-Ended Crowdsourcing: The Next Frontier in Crowdsourced Data Management. | Parameswaran, Aditya; Sarma, Akash Das; Venkataraman, Vipul | Bulletin of the Technical Committee on Data Engineering. | 2016 Dec; | 28951893 | |
| DNA repair deficiency biomarkers and the 70-gene ultra-high risk signature as predictors of veliparib/carboplatin response in the I-SPY 2 breast cancer trial. | Wolf, Denise M; Yau, Christina; Sanil, Ashish; Glas, Annuska; Petricoin, Emanuel; Wulfkuhle, Julia; Severson, Tesa M; Linn, Sabine; Brown-Swigart, Lamorna; Hirst, Gillian; Buxton, Meredith; DeMichele, Angela; Hylton, Nola; Symmans, Fraser; Yee, Doug; Paoloni, Melissa; Esserman, Laura; Berry, Don; Rugo, Hope; Olopade, Olufunmilayo; van 't Veer, Laura | NPJ breast cancer. | 2017; | 28948212 | |
| Topographic Regularity for Tract Filtering in Brain Connectivity. | Wang, Junyan; Aydogan, Dogu Baran; Varma, Rohit; Toga, Arthur W; Shi, Yonggang | Information processing in medical imaging : proceedings of the ... conference. | 2017 Jun; | 28943732 | |
| Multi-Source Multi-Target Dictionary Learning for Prediction of Cognitive Decline. | Zhang, Jie; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin | Information processing in medical imaging : proceedings of the ... conference. | 2017 Jun; | 28943731 | |
| Creating a data resource: what will it take to build a medical information commons? | Deverka, Patricia A; Majumder, Mary A; Villanueva, Angela G; Anderson, Margaret; Bakker, Annette C; Bardill, Jessica; Boerwinkle, Eric; Bubela, Tania; Evans, Barbara J; Garrison, Nanibaa' A; Gibbs, Richard A; Gentleman, Robert; Glazer, David; Goldstein, Melissa M; Greely, Hank; Harris, Crane; Knoppers, Bartha M; Koenig, Barbara A; Kohane, Isaac S; La Rosa, Salvatore; Mattison, John; O'Donnell, Christopher J; Rai, Arti K; Rehm, Heidi L; Rodriguez, Laura L; Shelton, Robert; Simoncelli, Tania; Terry, Sharon F; Watson, Michael S; Wilbanks, John; Cook-Deegan, Robert; McGuire, Amy L | Genome medicine. | 2017 Sep 22; | 28938910 | |
| The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays. | Schwenk, Jochen M; Omenn, Gilbert S; Sun, Zhi; Campbell, David S; Baker, Mark S; Overall, Christopher M; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W | Journal of proteome research. | 2017 Dec 01; | 28938075 | |
| Systematic integration of biomedical knowledge prioritizes drugs for repurposing. | Himmelstein, Daniel Scott; Lizee, Antoine; Hessler, Christine; Brueggeman, Leo; Chen, Sabrina L; Hadley, Dexter; Green, Ari; Khankhanian, Pouya; Baranzini, Sergio E | eLife. | 2017 Sep 22; | 28936969 | |
| Enhancing Diffusion MRI Measures By Integrating Grey and White Matter Morphometry With Hyperbolic Wasserstein Distance. | Zhang, Wen; Shi, Jie; Yu, Jun; Zhan, Liang; Thompson, Paul M; Wang, Yalin | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017; | 28936280 | |
| Periodontal-induced chronic inflammation triggers macrophage secretion of Ccl12 to inhibit fibroblast-mediated cardiac wound healing. | DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ero, Osasere K; Cates, Courtney A; Flynn, Elizabeth R; Cannon, Presley L; Jung, Mira; Shannon, De'Aries; Garrett, Michael R; Buchanan, William; Hall, Michael E; Ma, Yonggang; Lindsey, Merry L | JCI insight. | 2017 Sep 21; | 28931761 | |
| Precision annotation of digital samples in NCBI's gene expression omnibus. | Hadley, Dexter; Pan, James; El-Sayed, Osama; Aljabban, Jihad; Aljabban, Imad; Azad, Tej D; Hadied, Mohamad O; Raza, Shuaib; Rayikanti, Benjamin Abhishek; Chen, Bin; Paik, Hyojung; Aran, Dvir; Spatz, Jordan; Himmelstein, Daniel; Panahiazar, Maryam; Bhattacharya, Sanchita; Sirota, Marina; Musen, Mark A; Butte, Atul J | Scientific data. | 2017 Sep 19; | 28925997 | |
| Comments on ''Personalized dose finding using outcome weighted learning''. | Fan, Jun; Yuan, Ming | Journal of the American Statistical Association. | 2017; | 28919653 | |
| ARCHITECTURAL PATTERNS FOR DIFFERENTIAL DIAGNOSIS OF PROLIFERATIVE BREAST LESIONS FROM HISTOPATHOLOGICAL IMAGES. | Nguyen, L; Tosun, A B; Fine, J L; Taylor, D L; Chennubhotla, S C | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2017 Apr; | 28890755 | |
| Unique transcriptomic response to sepsis is observed among patients of different age groups. | Raymond, Steven L; López, María Cecilia; Baker, Henry V; Larson, Shawn D; Efron, Philip A; Sweeney, Timothy E; Khatri, Purvesh; Moldawer, Lyle L; Wynn, James L | PloS one. | 2017; | 28886074 | |
| Predicting multicellular function through multi-layer tissue networks. | Zitnik, Marinka; Leskovec, Jure | Bioinformatics (Oxford, England). | 2017 Jul 15; | 28881986 | |
| Modelling haplotypes with respect to reference cohort variation graphs. | Rosen, Yohei; Eizenga, Jordan; Paten, Benedict | Bioinformatics (Oxford, England). | 2017 Jul 15; | 28881971 | |
| Overdominant Effect of a CHRNA4 Polymorphism on Cingulo-Opercular Network Activity and Cognitive Control. | Sadaghiani, Sepideh; Ng, Bernard; Altmann, Andre; Poline, Jean-Baptiste; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Gallinat, Jürgen; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Lemaitre, Hervé; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Napolioni, Valerio; Greicius, Michael | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 2017 10 04; | 28877969 | |
| Using information technology to improve surveillance of antimicrobial resistance in South East Asia. | Vong, Sirenda; Anciaux, Amaury; Hulth, Anette; Stelling, John; Thamlikitkul, Visanu; Gupta, Sunil; Fuks, Jonas M; Walia, K?mini; Rattanumpawan, Pinyo; Eremin, Sergey; Tisocki, Klara; Sedai, Tika R; Sharma, Anuj | BMJ (Clinical research ed.). | 2017 09 05; | 28874344 | |
| Phelan-McDermid syndrome data network: Integrating patient reported outcomes with clinical notes and curated genetic reports. | Kothari, Cartik; Wack, Maxime; Hassen-Khodja, Claire; Finan, Sean; Savova, Guergana; O'Boyle, Megan; Bliss, Geraldine; Cornell, Andria; Horn, Elizabeth J; Davis, Rebecca; Jacobs, Jacquelyn; Kohane, Isaac; Avillach, Paul | American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. | 2017 Sep 01; | 28862395 | |
| Data-analysis strategies for image-based cell profiling. | Caicedo, Juan C; Cooper, Sam; Heigwer, Florian; Warchal, Scott; Qiu, Peng; Molnar, Csaba; Vasilevich, Aliaksei S; Barry, Joseph D; Bansal, Harmanjit Singh; Kraus, Oren; Wawer, Mathias; Paavolainen, Lassi; Herrmann, Markus D; Rohban, Mohammad; Hung, Jane; Hennig, Holger; Concannon, John; Smith, Ian; Clemons, Paul A; Singh, Shantanu; Rees, Paul; Horvath, Peter; Linington, Roger G; Carpenter, Anne E | Nature methods. | 2017 Aug 31; | 28858338 | |
| A signal-based method for finding driver modules of breast cancer metastasis to the lung. | Yan, Gaibo; Chen, Vicky; Lu, Xinghua; Lu, Songjian | Scientific reports. | 2017 08 30; | 28855549 | |
| Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. | Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Overall, Christopher M; Deutsch, Eric W | Journal of proteome research. | 2017 Dec 01; | 28853897 | |
| Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. | Deutsch, Eric W; Orchard, Sandra; Binz, Pierre-Alain; Bittremieux, Wout; Eisenacher, Martin; Hermjakob, Henning; Kawano, Shin; Lam, Henry; Mayer, Gerhard; Menschaert, Gerben; Perez-Riverol, Yasset; Salek, Reza M; Tabb, David L; Tenzer, Stefan; Vizcaíno, Juan Antonio; Walzer, Mathias; Jones, Andrew R | Journal of proteome research. | 2017 Dec 01; | 28849660 | |
| Apolipoprotein E Genotype and Sex Risk Factors for Alzheimer Disease: A Meta-analysis. | Neu, Scott C; Pa, Judy; Kukull, Walter; Beekly, Duane; Kuzma, Amanda; Gangadharan, Prabhakaran; Wang, Li-San; Romero, Klaus; Arneric, Stephen P; Redolfi, Alberto; Orlandi, Daniele; Frisoni, Giovanni B; Au, Rhoda; Devine, Sherral; Auerbach, Sanford; Espinosa, Ana; Boada, Mercè; Ruiz, Agustín; Johnson, Sterling C; Koscik, Rebecca; Wang, Jiun-Jie; Hsu, Wen-Chuin; Chen, Yao-Liang; Toga, Arthur W | JAMA neurology. | 2017 Oct 01; | 28846757 | |
| High-Definition Medicine. | Torkamani, Ali; Andersen, Kristian G; Steinhubl, Steven R; Topol, Eric J | Cell. | 2017 Aug 24; | 28841416 | |
| Refinement by integration: aggregated effects of multimodal imaging markers on adult ADHD. | Wolfers, Thomas; Arenas, Alberto Llera; Onnink, A Marten H; Dammers, Janneke; Hoogman, Martine; Zwiers, Marcel P; Buitelaar, Jan K; Franke, Barbara; Marquand, Andre F; Beckmann, Christian F | Journal of psychiatry & neuroscience : JPN. | 2017 Nov; | 28832320 | |
| Long Noncoding RNA Facilitated Gene Therapy Reduces Atherosclerosis in a Murine Model of Familial Hypercholesterolemia. | Tontonoz, Peter; Wu, Xiaohui; Jones, Marius; Zhang, Zhengyi; Salisbury, David; Sallam, Tamer | Circulation. | 2017 Aug 22; | 28827223 | |
| Anxiety-related experience-dependent white matter structural differences in adolescence: A monozygotic twin difference approach. | Adluru, Nagesh; Luo, Zhan; Van Hulle, Carol A; Schoen, Andrew J; Davidson, Richard J; Alexander, Andrew L; Goldsmith, H Hill | Scientific reports. | 2017 Aug 18; | 28821748 | |
| SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort. | Rueda, Manuel; Torkamani, Ali | BMC bioinformatics. | 2017 Aug 18; | 28821228 | |
| D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization. | Sharma, Deepak K; Solbrig, Harold R; Prud'hommeaux, Eric; Lee, Kate; Pathak, Jyotishman; Jiang, Guoqian | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2017; | 28815140 | |
| Precision Diagnosis Of Melanoma And Other Skin Lesions From Digital Images. | Bhattacharya, Abhishek; Young, Albert; Wong, Andrew; Stalling, Simone; Wei, Maria; Hadley, Dexter | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2017; | 28815132 | |
| Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance. | Emad, Amin; Cairns, Junmei; Kalari, Krishna R; Wang, Liewei; Sinha, Saurabh | Genome biology. | 2017 Aug 11; | 28800781 | |
| Utility of BI-RADS Assessment Category 4 Subdivisions for Screening Breast MRI. | Strigel, Roberta M; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie R; DeMartini, Wendy B | AJR. American journal of roentgenology. | 2017 Jun; | 28792802 | |
| PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension. | Chen, Feng; Wang, Chenghong; Dai, Wenrui; Jiang, Xiaoqian; Mohammed, Noman; Al Aziz, Md Momin; Sadat, Md Nazmus; Sahinalp, Cenk; Lauter, Kristin; Wang, Shuang | BMC medical genomics. | 2017 Jul 26; | 28786365 | |
| Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoid-derived hematologic malignancies. | Kurtz, Stephen E; Eide, Christopher A; Kaempf, Andy; Khanna, Vishesh; Savage, Samantha L; Rofelty, Angela; English, Isabel; Ho, Hibery; Pandya, Ravi; Bolosky, William J; Poon, Hoifung; Deininger, Michael W; Collins, Robert; Swords, Ronan T; Watts, Justin; Pollyea, Daniel A; Medeiros, Bruno C; Traer, Elie; Tognon, Cristina E; Mori, Motomi; Druker, Brian J; Tyner, Jeffrey W | Proceedings of the National Academy of Sciences of the United States of America. | 2017 Sep 05; | 28784769 | |
| Consistency of BRCA1 and BRCA2 Variant Classifications Among Clinical Diagnostic Laboratories. | Lincoln, Stephen E; Yang, Shan; Cline, Melissa S; Kobayashi, Yuya; Zhang, Can; Topper, Scott; Haussler, David; Paten, Benedict; Nussbaum, Robert L | JCO precision oncology. | 2017 Jul; | 28782058 | |
| Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data. | Shin, Sunyoung; Kele?, Sündüz | Statistics in biosciences. | 2017 Jun; | 28781711 | |
| Association of White Matter With Core Cognitive Deficits in Patients With Schizophrenia. | Kochunov, Peter; Coyle, Thomas R; Rowland, Laura M; Jahanshad, Neda; Thompson, Paul M; Kelly, Sinead; Du, Xiaoming; Sampath, Hemalatha; Bruce, Heather; Chiappelli, Joshua; Ryan, Meghann; Fisseha, Feven; Savransky, Anya; Adhikari, Bhim; Chen, Shuo; Paciga, Sara A; Whelan, Christopher D; Xie, Zhiyong; Hyde, Craig L; Chen, Xing; Schubert, Christian R; O'Donnell, Patricio; Hong, L Elliot | JAMA psychiatry. | 2017 Sep 01; | 28768312 | |
| Effect of tobacco smoking on frontal cortical thickness development: A longitudinal study in a mixed cohort of ADHD-affected and -unaffected youth. | Akkermans, Sophie E A; van Rooij, Daan; Rommelse, Nanda; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Mennes, Maarten; Buitelaar, Jan K | European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. | 2017 10; | 28764867 | |
| Genome-wide association analysis identifies common variants influencing infant brain volumes. | Xia, K; Zhang, J; Ahn, M; Jha, S; Crowley, J J; Szatkiewicz, J; Li, T; Zou, F; Zhu, H; Hibar, D; Thompson, P; ENIGMA Consortium; Sullivan, P F; Styner, M; Gilmore, J H; Knickmeyer, R C | Translational psychiatry. | 2017 Aug 01; | 28763065 | |
| Chalcone Derivatives: Promising Starting Points for Drug Design. | Gomes, Marcelo N; Muratov, Eugene N; Pereira, Maristela; Peixoto, Josana C; Rosseto, Lucimar P; Cravo, Pedro V L; Andrade, Carolina H; Neves, Bruno J | Molecules (Basel, Switzerland). | 2017 Jul 25; | 28757583 | |
| Principles of Dataset Versioning: Exploring the Recreation/Storage Tradeoff. | Bhattacherjee, Souvik; Chavan, Amit; Huang, Silu; Deshpande, Amol; Parameswaran, Aditya | Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. | 2015 Aug; | 28752014 | |
| Mobile Monitoring of Traumatic Brain Injury in Older Adults: Challenges and Opportunities. | Irimia, Andrei; Wei, Susan; Lu, Nanshu; Moore, Constance M; Kennedy, David N | Neuroinformatics. | 2017 Jul; | 28748392 | |
| Testing the comparative effects of physical activity advice by humans vs. computers in underserved populations: The COMPASS trial design, methods, and baseline characteristics. | King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Garcia, Dulce; Chazaro, Aldo; Blanco, German; Hauser, Michelle; Fierros, Fernando; Ahn, David K; Diaz, Jose; Done, Monica; Fernandez, Juan; Bickmore, Timothy | Contemporary clinical trials. | 2017 Oct; | 28739541 | |
| Modernization of Enoxaparin Molecular Weight Determination Using Homogeneous Standards. | Arnold, Katelyn M; Capuzzi, Stephen J; Xu, Yongmei; Muratov, Eugene N; Carrick, Kevin; Szajek, Anita Y; Tropsha, Alexander; Liu, Jian | Pharmaceuticals (Basel, Switzerland). | 2017 Jul 22; | 28737679 | |
| Shallow Representation Learning via Kernel PCA Improves QSAR Modelability. | Rensi, Stefano E; Altman, Russ B | Journal of chemical information and modeling. | ; | 28727421 | |
| Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM. | Gutierrez-Barragan, Felipe; Ithapu, Vamsi K; Hinrichs, Chris; Maumet, Camille; Johnson, Sterling C; Nichols, Thomas E; Singh, Vikas; Alzheimer's Disease Neuroimaging Initiative | NeuroImage. | 2017 Oct 01; | 28720551 | |
| Gramene Database: Navigating Plant Comparative Genomics Resources. | Gupta, Parul; Naithani, Sushma; Tello-Ruiz, Marcela Karey; Chougule, Kapeel; D'Eustachio, Peter; Fabregat, Antonio; Jiao, Yinping; Keays, Maria; Lee, Young Koung; Kumari, Sunita; Mulvaney, Joseph; Olson, Andrew; Preece, Justin; Stein, Joshua; Wei, Sharon; Weiser, Joel; Huerta, Laura; Petryszak, Robert; Kersey, Paul; Stein, Lincoln D; Ware, Doreen; Jaiswal, Pankaj | Current plant biology. | 2016 Nov; | 28713666 | |
| A graph extension of the positional Burrows-Wheeler transform and its applications. | Novak, Adam M; Garrison, Erik; Paten, Benedict | Algorithms for molecular biology : AMB. | 2017; | 28702075 | |
| Simulating ideal assistive devices to reduce the metabolic cost of walking with heavy loads. | Dembia, Christopher L; Silder, Amy; Uchida, Thomas K; Hicks, Jennifer L; Delp, Scott L | PloS one. | 2017; | 28700630 | |
| Large-scale physical activity data reveal worldwide activity inequality. | Althoff, Tim; Sosi?, Rok; Hicks, Jennifer L; King, Abby C; Delp, Scott L; Leskovec, Jure | Nature. | 2017 07 20; | 28693034 | |
| Origins of lymphatic and distant metastases in human colorectal cancer. | Naxerova, Kamila; Reiter, Johannes G; Brachtel, Elena; Lennerz, Jochen K; van de Wetering, Marc; Rowan, Andrew; Cai, Tianxi; Clevers, Hans; Swanton, Charles; Nowak, Martin A; Elledge, Stephen J; Jain, Rakesh K | Science (New York, N.Y.). | 2017 07 07; | 28684519 | |
| An exploration of crowdsourcing citation screening for systematic reviews. | Mortensen, Michael L; Adam, Gaelen P; Trikalinos, Thomas A; Kraska, Tim; Wallace, Byron C | Research synthesis methods. | 2017 Jul 04; | 28677322 | |
| A Simple Approach to Shared Decision Making in Cancer Screening. | Schrager, Sarina B; Phillips, Gina; Burnside, Elizabeth | Family practice management. | 2017 May/Jun; | 28671358 | |
| PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance. | Nadon, Celine; Van Walle, Ivo; Gerner-Smidt, Peter; Campos, Josefina; Chinen, Isabel; Concepcion-Acevedo, Jeniffer; Gilpin, Brent; Smith, Anthony M; Man Kam, Kai; Perez, Enrique; Trees, Eija; Kubota, Kristy; Takkinen, Johanna; Nielsen, Eva Møller; Carleto | Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. | 2017 06 08; | 28662764 | |
| Inducing Domain-Specific Sentiment Lexicons from Unlabeled Corpora. | Hamilton, William L; Clark, Kevin; Leskovec, Jure; Jurafsky, Dan | Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing. | 2016 Nov; | 28660257 | |
| Machine Learning Consensus Scoring Improves Performance Across Targets in Structure-Based Virtual Screening. | Ericksen, Spencer S; Wu, Haozhen; Zhang, Huikun; Michael, Lauren A; Newton, Michael A; Hoffmann, F Michael; Wildman, Scott A | Journal of chemical information and modeling. | 2017 Jul 24; | 28654262 | |
| UpSetR: an R package for the visualization of intersecting sets and their properties. | Conway, Jake R; Lex, Alexander; Gehlenborg, Nils | Bioinformatics (Oxford, England). | 2017 Sep 15; | 28645171 | |
| Predicting structured metadata from unstructured metadata. | Posch, Lisa; Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier | Database : the journal of biological databases and curation. | ; | 28637268 | |
| Anxiety modulates the relation between attention-deficit/hyperactivity disorder severity and working memory-related brain activity. | van der Meer, Dennis; Hoekstra, Pieter J; van Rooij, Daan; Winkler, Anderson M; van Ewijk, Hanneke; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Hartman, Catharina A | The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. | 2017 Mar 01; | 28635543 | |
| ClinVar data parsing. | Zhang, Xiaolei; Minikel, Eric V; O'Donnell-Luria, Anne H; MacArthur, Daniel G; Ware, James S; Weisburd, Ben | Wellcome open research. | 2017; | 28630944 | |
| Temporally Factorized Network Modeling for Evolutionary Network Analysis. | Yu, Wenchao; Aggarwal, Charu C; Wang, Wei | Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining. | 2017 Feb; | 28626845 | |
| Big Data Analytics with Datalog Queries on Spark. | Shkapsky, Alexander; Yang, Mohan; Interlandi, Matteo; Chiu, Hsuan; Condie, Tyson; Zaniolo, Carlo | Proceedings. ACM-Sigmod International Conference on Management of Data. | 2016 Jun-Jul; | 28626296 | |
| Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). | Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier | Journal of biomedical informatics. | ; | 28625880 | |
| Psychosocial Stress and Brain Function in Adolescent Psychopathology. | Quinlan, Erin Burke; Cattrell, Anna; Jia, Tianye; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Conrod, Patricia J; Desrivieres, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Glennon, Jeffrey C; Buitelaar, Jan K; Happé, Francesca; Loth, Eva; Barker, Edward D; Schumann, Gunter; IMAGEN Consortium | The American journal of psychiatry. | 2017 08 01; | 28618856 | |
| ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis. | Zhang, Guohao; Kochunov, Peter; Hong, Elliot; Kelly, Sinead; Whelan, Christopher; Jahanshad, Neda; Thompson, Paul; Chen, Jian | BMC bioinformatics. | 2017 Jun 06; | 28617224 | |
| Characterising omission errors in everyday task completion and cognitive correlates in individuals with mild cognitive impairment and dementia. | Beaver, Jenna; Wilson, Kaci B; Schmitter-Edgecombe, Maureen | Neuropsychological rehabilitation | 2019 Jun | 28617099 | |
| The Arf6 activator Efa6/PSD3 confers regional specificity and modulates ethanol consumption in Drosophila and humans. | Gonzalez, D A; Jia, T; Pinzón, J H; Acevedo, S F; Ojelade, S A; Xu, B; Tay, N; Desrivières, S; Hernandez, J L; Banaschewski, T; Büchel, C; Bokde, A L W; Conrod, P J; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P A; Heinz, A; Ittermann, B; Lathrop, M; Martinot, J-L; Paus, T; Smolka, M N; IMAGEN Consortium; Rodan, A R; Schumann, G; Rothenfluh, A | Molecular psychiatry. | 2017 Jun 13; | 28607459 | |
| Association of longitudinal white matter degeneration and cerebrospinal fluid biomarkers of neurodegeneration, inflammation and Alzheimer's disease in late-middle-aged adults. | Racine, Annie M; Merluzzi, Andrew P; Adluru, Nagesh; Norton, Derek; Koscik, Rebecca L; Clark, Lindsay R; Berman, Sara E; Nicholas, Christopher R; Asthana, Sanjay; Alexander, Andrew L; Blennow, Kaj; Zetterberg, Henrik; Kim, Won Hwa; Singh, Vikas; Carlsson, Cynthia M; Bendlin, Barbara B; Johnson, Sterling C | Brain imaging and behavior. | 2017 Jun 09; | 28600739 | |
| NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. | Martínez-Romero, Marcos; Jonquet, Clement; O'Connor, Martin J; Graybeal, John; Pazos, Alejandro; Musen, Mark A | Journal of biomedical semantics. | 2017 Jun 07; | 28592275 | |
| Female-specific association of NOS1 genotype with white matter microstructure in ADHD patients and controls. | van Ewijk, Hanneke; Bralten, Janita; van Duin, Esther D A; Hakobjan, Marina; Buitelaar, Jan K; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina; Hoogman, Martine; Oosterlaan, Jaap; Franke, Barbara | Journal of child psychology and psychiatry, and allied disciplines. | 2017 Aug; | 28589541 | |
| Predicting attention-deficit/hyperactivity disorder severity from psychosocial stress and stress-response genes: a random forest regression approach. | van der Meer, D; Hoekstra, P J; van Donkelaar, M; Bralten, J; Oosterlaan, J; Heslenfeld, D; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C A | Translational psychiatry. | 2017 Jun 06; | 28585928 | |
| Dead simple OWL design patterns. | Osumi-Sutherland, David; Courtot, Melanie; Balhoff, James P; Mungall, Christopher | Journal of biomedical semantics. | 2017 Jun 05; | 28583177 | |
| QSAR-driven design, synthesis and discovery of potent chalcone derivatives with antitubercular activity. | Gomes, Marcelo N; Braga, Rodolpho C; Grzelak, Edyta M; Neves, Bruno J; Muratov, Eugene; Ma, Rui; Klein, Larry L; Cho, Sanghyun; Oliveira, Guilherme R; Franzblau, Scott G; Andrade, Carolina Horta | European journal of medicinal chemistry. | 2017 May 10; | 28582669 | |
| Genetic influences on individual differences in longitudinal changes in global and subcortical brain volumes: Results of the ENIGMA plasticity working group. | Brouwer, Rachel M; Panizzon, Matthew S; Glahn, David C; Hibar, Derrek P; Hua, Xue; Jahanshad, Neda; Abramovic, Lucija; de Zubicaray, Greig I; Franz, Carol E; Hansell, Narelle K; Hickie, Ian B; Koenis, Marinka M G; Martin, Nicholas G; Mather, Karen A; McMahon, Katie L; Schnack, Hugo G; Strike, Lachlan T; Swagerman, Suzanne C; Thalamuthu, Anbupalam; Wen, Wei; Gilmore, John H; Gogtay, Nitin; Kahn, René S; Sachdev, Perminder S; Wright, Margaret J; Boomsma, Dorret I; Kremen, William S; Thompson, Paul M; Hulshoff Pol, Hilleke E | Human brain mapping. | 2017 Sep; | 28580697 | |
| Cultural Shift or Linguistic Drift? Comparing Two Computational Measures of Semantic Change. | Hamilton, William L; Leskovec, Jure; Jurafsky, Dan | Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing. | 2016 Nov; | 28580459 | |
| A review of active learning approaches to experimental design for uncovering biological networks. | Sverchkov, Yuriy; Craven, Mark | PLoS computational biology. | 2017 Jun; | 28570593 | |
| Structure-Leveraged Methods in Breast Cancer Risk Prediction. | Fan, Jun; Wu, Yirong; Yuan, Ming; Page, David; Liu, Jie; Ong, Irene M; Peissig, Peggy; Burnside, Elizabeth | Journal of machine learning research : JMLR. | 2016 Dec; | 28559747 | |
| Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics. | Barger, Jamie L; Vann, James M; Cray, Nicole L; Pugh, Thomas D; Mastaloudis, Angela; Hester, Shelly N; Wood, Steven M; Newton, Michael A; Weindruch, Richard; Prolla, Tomas A | Aging cell. | 2017 Aug; | 28556428 | |
| VISAGE: Interactive Visual Graph Querying. | Pienta, Robert; Navathe, Shamkant; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen Horng | AVI : proceedings of the Workshop on Advanced Visual Interfaces. AVI (Conference). | 2016 Jun; | 28553670 | |
| Statistical Methods for Latent Class Quantitative Trait Loci Mapping. | Ye, Shuyun; Bacher, Rhonda; Keller, Mark P; Attie, Alan D; Kendziorski, Christina | Genetics. | 2017 07; | 28550015 | |
| Prefrontal cortical thinning links to negative symptoms in schizophrenia via the ENIGMA consortium. | Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Morch-Johnsen, L; Færden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Jahanshad, N; De Rossi, P; Piras, F; Banaj, N; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, S | Psychological medicine. | 2018 Jan; | 28545597 | |
| Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach. | Wallace, Byron C; Noel-Storr, Anna; Marshall, Iain J; Cohen, Aaron M; Smalheiser, Neil R; Thomas, James | Journal of the American Medical Informatics Association : JAMIA. | 2017 Nov 01; | 28541493 | |
| MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. | Bernstein, Matthew N; Doan, AnHai; Dewey, Colin N | Bioinformatics (Oxford, England). | 2017 Sep 15; | 28535296 | |
| Using high-resolution variant frequencies to empower clinical genome interpretation. | Whiffin, Nicola; Minikel, Eric; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel; Ware, James S | Genetics in medicine : official journal of the American College of Medical Genetics. | 2017 Oct; | 28518168 | |
| The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. | Vizcaíno, Juan Antonio; Mayer, Gerhard; Perkins, Simon; Barsnes, Harald; Vaudel, Marc; Perez-Riverol, Yasset; Ternent, Tobias; Uszkoreit, Julian; Eisenacher, Martin; Fischer, Lutz; Rappsilber, Juri; Netz, Eugen; Walzer, Mathias; Kohlbacher, Oliver; Leitner, Alexander; Chalkley, Robert J; Ghali, Fawaz; Martínez-Bartolomé, Salvador; Deutsch, Eric W; Jones, Andrew R | Molecular & cellular proteomics : MCP. | 2017 Jul; | 28515314 | |
| Diverging volumetric trajectories following pediatric traumatic brain injury. | Dennis, Emily L; Faskowitz, Joshua; Rashid, Faisal; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Jahanshad, Neda; Thompson, Paul M; Asarnow, Robert F | NeuroImage. Clinical. | 2017; | 28507895 | |
| Heritability of Hippocampal Formation Sub-region Volumes. | Greenspan, Kiefer S; Arakelian, Claire R; van Erp, Theo G M | Journal of neurology and neuroscience. | 2016; | 28503392 | |
| L1-Regularized Least Squares for Support Recovery of High Dimensional Single Index Models with Gaussian Designs. | Neykov, Matey; Liu, Jun S; Cai, Tianxi | Journal of machine learning research : JMLR. | 2016 May; | 28503101 | |
| Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions. | Xia, Yin; Cai, Tianxi; Cai, T Tony | Biometrika. | 2015 Jun; | 28502988 | |
| Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. | Jagodnik, Kathleen M; Koplev, Simon; Jenkins, Sherry L; Ohno-Machado, Lucila; Paten, Benedict; Schurer, Stephan C; Dumontier, Michel; Verborgh, Ruben; Bui, Alex; Ping, Peipei; McKenna, Neil J; Madduri, Ravi; Pillai, Ajay; Ma'ayan, Avi | Journal of biomedical informatics. | 2017 07; | 28501646 | |
| Continuous representations of brain connectivity using spatial point processes. | Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul M | Medical image analysis. | 2017 Oct; | 28487128 | |
| Discovering and linking public omics data sets using the Omics Discovery Index. | Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; Hermjakob, Henning | Nature biotechnology. | 2017 05 09; | 28486464 | |
| Deep learning for healthcare: review, opportunities and challenges. | Miotto, Riccardo; Wang, Fei; Wang, Shuang; Jiang, Xiaoqian; Dudley, Joel T | Briefings in bioinformatics. | 2017 May 06; | 28481991 | |
| Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. | Kleffner, Robert; Flatten, Jeff; Leaver-Fay, Andrew; Baker, David; Siegel, Justin B; Khatib, Firas; Cooper, Seth | Bioinformatics (Oxford, England). | 2017 Sep 01; | 28481970 | |
| Experimental Design on a Budget for Sparse Linear Models and Applications. | Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Singh, Vikas | JMLR workshop and conference proceedings. | 2016 Jun; | 28479945 | |
| Widespread Allelic Heterogeneity in Complex Traits. | Hormozdiari, Farhad; Zhu, Anthony; Kichaev, Gleb; Ju, Chelsea J-T; Segrè, Ayellet V; Joo, Jong Wha J; Won, Hyejung; Sankararaman, Sriram; Pasaniuc, Bogdan; Shifman, Sagiv; Eskin, Eleazar | American journal of human genetics. | 2017 May 04; | 28475861 | |
| Associations of the Intellectual Disability Gene MYT1L with Helix-Loop-Helix Gene Expression, Hippocampus Volume and Hippocampus Activation During Memory Retrieval. | Kepa, Agnieszka; Martinez Medina, Lourdes; Erk, Susanne; Srivastava, Deepak P; Fernandes, Alinda; Toro, Roberto; Lévi, Sabine; Ruggeri, Barbara; Fernandes, Cathy; Degenhardt, Franziska; Witt, Stephanie H; Meyer-Lindenberg, Andreas; Poncer, Jean-Christophe; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Müller, Christian P; Heinz, Andreas; Walter, Henrik; Schumann, Gunter; Desrivières, Sylvane | Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. | 2017 Dec; | 28470180 | |
| Subcortical brain structure and suicidal behaviour in major depressive disorder: a meta-analysis from the ENIGMA-MDD working group. | Rentería, M E; Schmaal, L; Hibar, D P; Couvy-Duchesne, B; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hatton, S N; Lagopoulos, J; Veltman, D J; van der Wee, N; van Erp, T G M; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Godlewska, B R; Cowen, P J; Penninx, B W J H; Jahanshad, N; Thompson, P M; Wright, M J; Martin, N G; Christensen, H; Hickie, I B | Translational psychiatry. | 2017 May 02; | 28463239 | |
| Connectome imaging for mapping human brain pathways. | Shi, Y; Toga, A W | Molecular psychiatry. | 2017 Sep; | 28461700 | |
| Cortical abnormalities in bipolar disorder: an MRI analysis of 6503 individuals from the ENIGMA Bipolar Disorder Working Group. | Hibar, D P; Westlye, L T; Doan, N T; Jahanshad, N; Cheung, J W; Ching, C R K; Versace, A; Bilderbeck, A C; Uhlmann, A; Mwangi, B; Krämer, B; Overs, B; Hartberg, C B; Abé, C; Dima, D; Grotegerd, D; Sprooten, E; Bøen, E; Jimenez, E; Howells, F M; Delvecchio, G; Temmingh, H; Starke, J; Almeida, J R C; Goikolea, J M; Houenou, J; Beard, L M; Rauer, L; Abramovic, L; Bonnin, M; Ponteduro, M F; Keil, M; Rive, M M; Yao, N; Yalin, N; Najt, P; Rosa, P G; Redlich, R; Trost, S; Hagenaars, S; Fears, S C; Alonso-Lana, S; van Erp, T G M; Nickson, T; Chaim-Avancini, T M; Meier, T B; Elvsåshagen, T; Haukvik, U K; Lee, W H; Schene, A H; Lloyd, A J; Young, A H; Nugent, A; Dale, A M; Pfennig, A; McIntosh, A M; Lafer, B; Baune, B T; Ekman, C J; Zarate, C A; Bearden, C E; Henry, C; Simhandl, C; McDonald, C; Bourne, C; Stein, D J; Wolf, D H; Cannon, D M; Glahn, D C; Veltman, D J; Pomarol-Clotet, E; Vieta, E; Canales-Rodriguez, E J; Nery, F G; Duran, F L S; Busatto, G F; Roberts, G; Pearlson, G D; Goodwin, G M; Kugel, H; Whalley, H C; Ruhe, H G; Soares, J C; Fullerton, J M; Rybakowski, J K; Savitz, J; Chaim, K T; Fatjó-Vilas, M; Soeiro-de-Souza, M G; Boks, M P; Zanetti, M V; Otaduy, M C G; Schaufelberger, M S; Alda, M; Ingvar, M; Phillips, M L; Kempton, M J; Bauer, M; Landén, M; Lawrence, N S; van Haren, N E M; Horn, N R; Freimer, N B; Gruber, O; Schofield, P R; Mitchell, P B; Kahn, R S; Lenroot, R; Machado-Vieira, R; Ophoff, R A; Sarró, S; Frangou, S; Satterthwaite, T D; Hajek, T; Dannlowski, U; Malt, U F; Arolt, V; Gattaz, W F; Drevets, W C; Caseras, X; Agartz, I; Thompson, P M; Andreassen, O A | Molecular psychiatry. | 2017 May 02; | 28461699 | |
| Flexible Analog Search with Kernel PCA Embedded Molecule Vectors. | Rensi, Stefano; Altman, Russ B | Computational and structural biotechnology journal. | 2017; | 28458783 | |
| IL-10 improves cardiac remodeling after myocardial infarction by stimulating M2 macrophage polarization and fibroblast activation. | Jung, Mira; Ma, Yonggang; Iyer, Rugmani Padmanabhan; DeLeon-Pennell, Kristine Y; Yabluchanskiy, Andriy; Garrett, Michael R; Lindsey, Merry L | Basic research in cardiology. | 2017 May; | 28439731 | |
| The C677T variant in MTHFR modulates associations between brain integrity, mood, and cognitive functioning in old age. | Roussotte, Florence F; Hua, Xue; Narr, Katherine L; Small, Gary W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative | Biological psychiatry. Cognitive neuroscience and neuroimaging. | 2017 Apr; | 28435933 | |
| Computer-aided discovery of two novel chalcone-like compounds active and selective against Leishmania infantum. | Gomes, Marcelo N; Alcântara, Laura M; Neves, Bruno J; Melo-Filho, Cleber C; Freitas-Junior, Lucio H; Moraes, Carolina B; Ma, Rui; Franzblau, Scott G; Muratov, Eugene; Andrade, Carolina Horta | Bioorganic & medicinal chemistry letters. | 2017 Jun 01; | 28434763 | |
| Emerging Global Initiatives in Neurogenetics: The Enhancing Neuroimaging Genetics through Meta-analysis (ENIGMA) Consortium. | Bearden, Carrie E; Thompson, Paul M | Neuron. | 2017 Apr 19; | 28426957 | |
| Association of Patient Age With Outcomes of Current-Era, Large-Scale Screening Mammography: Analysis of Data From the National Mammography Database. | Lee, Cindy S; Sengupta, Debapriya; Bhargavan-Chatfield, Mythreyi; Sickles, Edward A; Burnside, Elizabeth S; Zuley, Margarita L | JAMA oncology. | 2017 Aug 01; | 28426842 | |
| Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. | Roy, Sushmita; Sridharan, Rupa | Genome research. | 2017 Jul; | 28424352 | |
| Progressive Dictionary Learning with Hierarchical Predictive Structure for Scalable Video Coding. | Dai, Wenrui; Shen, Yangmei; Xiong, Hongkai; Jiang, Xiaoqian; Zou, Junni; Taubman, David | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. | 2017 Apr 12; | 28422683 | |
| Validation of the Sepsis MetaScore for Diagnosis of Neonatal Sepsis. | Sweeney, Timothy E; Wynn, James L; Cernada, María; Serna, Eva; Wong, Hector R; Baker, Henry V; Vento, Máximo; Khatri, Purvesh | Journal of the Pediatric Infectious Diseases Society. | 2017 Apr 13; | 28419265 | |
| SCnorm: robust normalization of single-cell RNA-seq data. | Bacher, Rhonda; Chu, Li-Fang; Leng, Ning; Gasch, Audrey P; Thomson, James A; Stewart, Ron M; Newton, Michael; Kendziorski, Christina | Nature methods. | 2017 Jun; | 28418000 | |
| Noise-induced symmetry breaking far from equilibrium and the emergence of biological homochirality. | Jafarpour, Farshid; Biancalani, Tommaso; Goldenfeld, Nigel | Physical review. E. | 2017 Mar; | 28415353 | |
| Matrix Metalloproteinases in Myocardial Infarction and Heart Failure. | DeLeon-Pennell, Kristine Y; Meschiari, Cesar A; Jung, Mira; Lindsey, Merry L | Progress in molecular biology and translational science. | 2017; | 28413032 | |
| Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides? | Alves, Vinicius M; Muratov, Eugene N; Zakharov, Alexey; Muratov, Nail N; Andrade, Carolina H; Tropsha, Alexander | Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association. | 2017 Apr 12; | 28412406 | |
| Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis. | Agniel, Denis; Cai, Tianxi | Biometrics. | 2017 Dec; | 28407213 | |
| Optimizing Interactive Development of Data-Intensive Applications. | Interlandi, Matteo; Tetali, Sai Deep; Gulzar, Muhammad Ali; Noor, Joseph; Condie, Tyson; Kim, Miryung; Millstein, Todd | Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). | 2016 Oct; | 28405637 | |
| Omicseq: a web-based search engine for exploring omics datasets. | Sun, Xiaobo; Pittard, William S; Xu, Tianlei; Chen, Li; Zwick, Michael E; Jiang, Xiaoqian; Wang, Fusheng; Qin, Zhaohui S | Nucleic acids research. | 2017 07 03; | 28402462 | |
| Toil enables reproducible, open source, big biomedical data analyses. | Vivian, John; Rao, Arjun Arkal; Nothaft, Frank Austin; Ketchum, Christopher; Armstrong, Joel; Novak, Adam; Pfeil, Jacob; Narkizian, Jake; Deran, Alden D; Musselman-Brown, Audrey; Schmidt, Hannes; Amstutz, Peter; Craft, Brian; Goldman, Mary; Rosenbloom, Kate; Cline, Melissa; O'Connor, Brian; Hanna, Megan; Birger, Chet; Kent, W James; Patterson, David A; Joseph, Anthony D; Zhu, Jingchun; Zaranek, Sasha; Getz, Gad; Haussler, David; Paten, Benedict | Nature biotechnology. | 2017 Apr 11; | 28398314 | |
| EFhd2/Swiprosin-1 is a common genetic determinator for sensation-seeking/low anxiety and alcohol addiction. | Mielenz, D; Reichel, M; Jia, T; Quinlan, E B; Stöckl, T; Mettang, M; Zilske, D; Kirmizi-Alsan, E; Schönberger, P; Praetner, M; Huber, S E; Amato, D; Schwarz, M; Purohit, P; Brachs, S; Spranger, J; Hess, A; Büttner, C; Ekici, A B; Perez-Branguli, F; Winner, B; Rauschenberger, V; Banaschewski, T; Bokde, A L W; Büchel, C; Conrod, P J; Desrivières, S; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Lemaitre, H; Nees, F; Paus, T; Smolka, M N; IMAGEN Consortium; Schambony, A; Bäuerle, T; Eulenburg, V; Alzheimer, C; Lourdusamy, A; Schumann, G; Müller, C P | Molecular psychiatry. | 2018 May; | 28397836 | |
| A million variables and more: the Fast Greedy Equivalence Search algorithm for learning high-dimensional graphical causal models, with an application to functional magnetic resonance images. | Ramsey, Joseph; Glymour, Madelyn; Sanchez-Romero, Ruben; Glymour, Clark | International journal of data science and analytics. | 2017 Mar; | 28393106 | |
| Shape Analysis with Hyperbolic Wasserstein Distance. | Shi, Jie; Zhang, Wen; Wang, Yalin | Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. | 2016 Jun; | 28392672 | |
| Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data. | Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, David | IJCAI : proceedings of the conference. | 2016 Jul; | 28392671 | |
| Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. | Baker, K S; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, H M; Guzmán-Verri, C; Mather, A E; Diaz Velasco, S; Zamudio Rojas, M L; Forbester, J L; Connor, T R; Keddy, K H; Smith, A M; López de Delgado, E A; An | Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. | 2017 Nov; | 28389276 | |
| Combining clinical and genomics queries using i2b2 - Three methods. | Murphy, Shawn N; Avillach, Paul; Bellazzi, Riccardo; Phillips, Lori; Gabetta, Matteo; Eran, Alal; McDuffie, Michael T; Kohane, Isaac S | PloS one. | 2017; | 28388645 | |
| Mutation of WIF1: a potential novel cause of a Nail-Patella-like disorder. | Jones, Marilyn C; Topol, Sarah E; Rueda, Manuel; Oliveira, Glenn; Phillips, Tierney; Spencer, Emily G; Torkamani, Ali | Genetics in medicine : official journal of the American College of Medical Genetics. | 2017 Oct; | 28383544 | |
| Structuring supplemental materials in support of reproducibility. | Greenbaum, Dov; Rozowsky, Joel; Stodden, Victoria; Gerstein, Mark | Genome biology. | 2017 Apr 05; | 28381262 | |
| Positive symptoms associate with cortical thinning in the superior temporal gyrus via the ENIGMA Schizophrenia consortium. | Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; Van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Mørch-Johnsen, L; Faerden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Preda, A; De Rossi, P; Piras, F; Banaj, N; Ciullo, V; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, S | Acta psychiatrica Scandinavica. | 2017 May; | 28369804 | |
| Envisioning the Future of 'Big Data' Biomedicine. | Bui, Alex A T; Darrell Van Horn, John; NIH BD2K Centers Consortium | Journal of biomedical informatics. | 2017 Mar 30; | 28366789 | |
| WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. | Putman, Tim E; Lelong, Sebastien; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Diesh, Colin; Dunn, Nathan; Munoz-Torres, Monica; Stupp, Gregory S; Wu, Chunlei; Su, Andrew I; Good, Benjamin M | Database : the journal of biological databases and curation. | 2017 Jan 01; | 28365742 | |
| Cardiac Fibroblast Activation Post-Myocardial Infarction: Current Knowledge Gaps. | Ma, Yonggang; Iyer, Rugmani Padmanabhan; Jung, Mira; Czubryt, Michael P; Lindsey, Merry L | Trends in pharmacological sciences. | 2017 May; | 28365093 | |
| An algorithm for direct causal learning of influences on patient outcomes. | Rathnam, Chandramouli; Lee, Sanghoon; Jiang, Xia | Artificial intelligence in medicine. | 2017 Jan; | 28363452 | |
| Revealing common disease mechanisms shared by tumors of different tissues of origin through semantic representation of genomic alterations and topic modeling. | Chen, Vicky; Paisley, John; Lu, Xinghua | BMC genomics. | 2017 03 14; | 28361690 | |
| Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine. | Ping, Peipei; Watson, Karol; Han, Jiawei; Bui, Alex | Circulation research. | 2017 Mar 31; | 28360346 | |
| Genome graphs and the evolution of genome inference. | Paten, Benedict; Novak, Adam M; Eizenga, Jordan M; Garrison, Erik | Genome research. | 2017 May; | 28360232 | |
| Binary Classifier Calibration Using an Ensemble of Linear Trend Estimation. | Naeini, Mahdi Pakdaman; Cooper, Gregory F | Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. | 2016 May; | 28357158 | |
| Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice. | Saul, Michael C; Seward, Christopher H; Troy, Joseph M; Zhang, Huimin; Sloofman, Laura G; Lu, Xiaochen; Weisner, Patricia A; Caetano-Anolles, Derek; Sun, Hao; Zhao, Sihai Dave; Chandrasekaran, Sriram; Sinha, Saurabh; Stubbs, Lisa | Genome research. | 2017 06; | 28356321 | |
| Online Actions with Offline Impact: How Online Social Networks Influence Online and Offline User Behavior. | Althoff, Tim; Jindal, Pranav; Leskovec, Jure | Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining. | 2017 Feb; | 28345078 | |
| Large-scale Analysis of Counseling Conversations: An Application of Natural Language Processing to Mental Health. | Althoff, Tim; Clark, Kevin; Leskovec, Jure | Transactions of the Association for Computational Linguistics. | 2016; | 28344978 | |
| SNAP: A General Purpose Network Analysis and Graph Mining Library. | Leskovec, Jure; Sosi?, Rok | ACM transactions on intelligent systems and technology. | 2016 Oct; | 28344853 | |
| The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows. | O'Connor, Brian D; Yuen, Denis; Chung, Vincent; Duncan, Andrew G; Liu, Xiang Kun; Patricia, Janice; Paten, Benedict; Stein, Lincoln; Ferretti, Vincent | F1000Research. | 2017; | 28344774 | |
| Ensuring Rapid Mixing and Low Bias for Asynchronous Gibbs Sampling. | De Sa, Christopher; Olukotun, Kunle; Ré, Christopher | JMLR workshop and conference proceedings. | 2016; | 28344730 | |
| Control Engineering Methods for the Design of Robust Behavioral Treatments. | Bekiroglu, Korkut; Lagoa, Constantino; Murphy, Suzan A; Lanza, Stephanie T | IEEE transactions on control systems technology : a publication of the IEEE Control Systems Society. | 2017 May; | 28344431 | |
| Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much. | He, Bryan; De Sa, Christopher; Mitliagkas, Ioannis; Ré, Christopher | Advances in neural information processing systems. | 2016; | 28344429 | |
| DeepDive: Declarative Knowledge Base Construction. | De Sa, Christopher; Ratner, Alex; Ré, Christopher; Shin, Jaeho; Wang, Feiran; Wu, Sen; Zhang, Ce | SIGMOD record. | 2016 Mar; | 28344371 | |
| Privacy and Security in Mobile Health: A Research Agenda. | Kotz, David; Gunter, Carl A; Kumar, Santosh; Weiner, Jonathan P | Computer. | 2016 Jun; | 28344359 | |
| Muscle-tendon mechanics explain unexpected effects of exoskeleton assistance on metabolic rate during walking. | Jackson, Rachel W; Dembia, Christopher L; Delp, Scott L; Collins, Steven H | The Journal of experimental biology. | 2017 Jun 01; | 28341663 | |
| Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. | Raisaro, Jean Louis; Tramèr, Florian; Ji, Zhanglong; Bu, Diyue; Zhao, Yongan; Carey, Knox; Lloyd, David; Sofia, Heidi; Baker, Dixie; Flicek, Paul; Shringarpure, Suyash; Bustamante, Carlos; Wang, Shuang; Jiang, Xiaoqian; Ohno-Machado, Lucila; Tang, Haixu; Wang, XiaoFeng; Hubaux, Jean-Pierre | Journal of the American Medical Informatics Association : JAMIA. | 2017 Jul 01; | 28339683 | |
| Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings. | Sauerwald, Natalie; Zhang, She; Kingsford, Carl; Bahar, Ivet | Nucleic acids research. | 2017 Apr 20; | 28334818 | |
| Use of WHONET-SaTScan system for simulated real-time detection of antimicrobial resistance clusters in a hospital in Italy, 2012 to 2014. | Natale, Alessandra; Stelling, John; Meledandri, Marcello; Messenger, Louisa A; D'Ancona, Fortunato | Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. | 2017 Mar 16; | 28333615 | |
| Network analysis: a novel method for mapping neonatal acute transport patterns in California. | Kunz, S N; Zupancic, J A F; Rigdon, J; Phibbs, C S; Lee, H C; Gould, J B; Leskovec, J; Profit, J | Journal of perinatology : official journal of the California Perinatal Association. | 2017 Jun; | 28333155 | |
| Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images. | Nguyen, Luong; Tosun, Akif Burak; Fine, Jeffrey L; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S Chakra | IEEE transactions on medical imaging. | 2017 Jul; | 28328502 | |
| Liberal Entity Extraction: Rapid Construction of Fine-Grained Entity Typing Systems. | Huang, Lifu; May, Jonathan; Pan, Xiaoman; Ji, Heng; Ren, Xiang; Han, Jiawei; Zhao, Lin; Hendler, James A | Big data. | 2017 03; | 28328252 | |
| Functional Neuroimaging Predictors of Self-Reported Psychotic Symptoms in Adolescents. | Bourque, Josiane; Spechler, Philip A; Potvin, Stéphane; Whelan, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère-Martinot, Marie-Laure; McEwen, Sarah C; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Conrod, Patricia J; IMAGEN Consortium | The American journal of psychiatry. | 2017 06 01; | 28320226 | |
| Programming and Runtime Support to Blaze FPGA Accelerator Deployment at Datacenter Scale. | Huang, Muhuan; Wu, Di; Yu, Cody Hao; Fang, Zhenman; Interlandi, Matteo; Condie, Tyson; Cong, Jason | Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). | 2016 Oct; | 28317049 | |
| Computational Drug Repositioning Using Continuous Self-Controlled Case Series. | Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, David | KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. | 2016 Aug; | 28316874 | |
| Binary Classifier Calibration using an Ensemble of Near Isotonic Regression Models. | Naeini, Mahdi Pakdaman; Cooper, Gregory F | Proceedings. IEEE International Conference on Data Mining. | 2016 Dec; | 28316511 | |
| Extracting Databases from Dark Data with DeepDive. | Zhang, Ce; Shin, Jaeho; Ré, Christopher; Cafarella, Michael; Niu, Feng | Proceedings. ACM-Sigmod International Conference on Management of Data. | 2016 Jun-Jul; | 28316365 | |
| The impact of aging on cardiac extracellular matrix. | Meschiari, Cesar A; Ero, Osasere Kelvin; Pan, Haihui; Finkel, Toren; Lindsey, Merry L | GeroScience. | 2017 Feb; | 28299638 | |
| Diverging white matter trajectories in children after traumatic brain injury: The RAPBI study. | Dennis, Emily L; Rashid, Faisal; Ellis, Monica U; Babikian, Talin; Vlasova, Roza M; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F | Neurology. | 2017 Apr 11; | 28298549 | |
| Augmented estimation for t-year survival with censored regression models. | Zheng, Yu; Cai, Tianxi | Biometrics. | 2017 Dec; | 28294286 | |
| The authors reply. | Sweeney, Timothy E; Khatri, Purvesh | Critical care medicine. | 2017 Apr; | 28291107 | |
| Laissez-Faire : Fully Asymmetric Backscatter Communication. | Hu, Pan; Zhang, Pengyu; Ganesan, Deepak | Proceedings of ACM SIGCOMM ... Conference. ACM SIGCOMM Conference. | 2015 Aug; | 28286885 | |
| HSPA5 Gene encoding Hsp70 chaperone BiP in the endoplasmic reticulum. | Wang, Jie; Lee, Jessica; Liem, David; Ping, Peipei | Gene. | 2017 Jun 30; | 28286085 | |
| Measurement Error and Causal Discovery. | Scheines, Richard; Ramsey, Joseph | CEUR workshop proceedings. | 2016 Jun; | 28280453 | |
| Sequence robust association test for familial data. | Dai, Wei; Yang, Ming; Wang, Chaolong; Cai, Tianxi | Biometrics. | 2017 09; | 28273695 | |
| Modeling the Temporal Evolution of Postoperative Complications. | Feld, Shara I; Cobian, Alexander G; Tevis, Sarah E; Kennedy, Gregory D; Craven, Mark W | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2016; | 28269851 | |
| An Extended SNOMED CT Concept Model for Observations in Molecular Genetics. | Campbell, James R; Talmon, Geoffrey; Cushman-Vokoun, Allison; Karlsson, Daniel; Scott Campbell, W | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2016; | 28269830 | |
| Fractional anisotropy derived from the diffusion tensor distribution function boosts power to detect Alzheimer's disease deficits. | Nir, Talia M; Jahanshad, Neda; Villalon-Reina, Julio E; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Zhan, Liang; Leow, Alex D; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Diseaase Neuroimaginng Initiative (ADNI) | Magnetic resonance in medicine. | 2017 Dec; | 28266059 | |
| Latent Variable Graphical Model Selection using Harmonic Analysis: Applications to the Human Connectome Project (HCP). | Kim, Won Hwa; Kim, Hyunwoo J; Adluru, Nagesh; Singh, Vikas | Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. | 2016 Jun; | 28255221 | |
| Mammography Screening: Gaps in Patient's and Physician's Needs for Shared Decision-Making. | DuBenske, Lori L; Schrager, Sarina; McDowell, Helene; Wilke, Lee G; Trentham-Dietz, Amy; Burnside, Elizabeth S | The breast journal. | 2017 Mar; | 28252231 | |
| Analytic Complexity and Challenges in Identifying Mixtures of Exposures Associated with Phenotypes in the Exposome Era. | Patel, Chirag J | Current epidemiology reports. | 2017; | 28251040 | |
| Reactome pathway analysis: a high-performance in-memory approach. | Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Forner, Oscar; Marin-Garcia, Pablo; Arnau, Vicente; D'Eustachio, Peter; Stein, Lincoln; Hermjakob, Henning | BMC bioinformatics. | 2017 Mar 02; | 28249561 | |
| Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation. | Rahmani, E |