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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
Metabolomics (533)
| Publication Title | Authors | Journal | Publication Date | Page No | PubMedID |
|---|---|---|---|---|---|
| Effects of fish oil supplementation on prostaglandins in normal and tumor colon tissue: modulation by the lipogenic phenotype of colon tumors. | Djuric, Zora; Aslam, Muhammad Nadeem; Simon, Becky R; Sen, Ananda; Jiang, Yan; Ren, Jianwei; Chan, Rena; Soni, Tanu; Rajendiran, T M; Smith, William L; Brenner, Dean E | The Journal of nutritional biochemistry. | 2017 Apr 25; | 28486173 | |
| Lipidomic Signature of Progression of Chronic Kidney Disease in the Chronic Renal Insufficiency Cohort. | Afshinnia, Farsad; Rajendiran, Thekkelnaycke M; Karnovsky, Alla; Soni, Tanu; Wang, Xue; Xie, Dawei; Yang, Wei; Shafi, Tariq; Weir, Matthew R; He, Jiang; Brecklin, Carolyn S; Rhee, Eugene P; Schelling, Jeffrey R; Ojo, Akinlolu; Feldman, Harold; Michailidis | Kidney international reports. | 2016 Nov; | 28451650 | |
| Staphylococcus aureus nitric oxide synthase (saNOS) modulates aerobic respiratory metabolism and cell physiology. | Mogen, Austin B; Carroll, Ronan K; James, Kimberly L; Lima, Genevy; Silva, Dona; Culver, Jeffrey A; Petucci, Christopher; Shaw, Lindsey N; Rice, Kelly C | Molecular microbiology. | 2017 Apr 21; | 28431199 | |
| Plasma metabolomics in adults with cystic fibrosis during a pulmonary exacerbation: A pilot randomized study of high-dose vitamin D3 administration. | Alvarez, Jessica A; Chong, Elizabeth Y; Walker, Douglas I; Chandler, Joshua D; Michalski, Ellen S; Grossmann, Ruth E; Uppal, Karan; Li, Shuzhao; Frediani, Jennifer K; Tirouvanziam, Rabindra; Tran, ViLinh T; Tangpricha, Vin; Jones, Dean P; Ziegler, Thomas | Metabolism: clinical and experimental. | 2017 May; | 28403943 | |
| Cyclooxygenase-derived proangiogenic metabolites of epoxyeicosatrienoic acids. | Rand, Amy A; Barnych, Bogdan; Morisseau, Christophe; Cajka, Tomas; Lee, Kin Sing Stephen; Panigrahy, Dipak; Hammock, Bruce D | Proceedings of the National Academy of Sciences of the United States of America. | 2017 Apr 25; | 28396419 | |
| Active-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase. | Hvorecny, Kelli L; Bahl, Christopher D; Kitamura, Seiya; Lee, Kin Sing Stephen; Hammock, Bruce D; Morisseau, Christophe; Madden, Dean R | Structure (London, England : 1993). | 2017 May 02; | 28392259 | |
| Influence of omega-3 fatty acids on skeletal muscle protein metabolism and mitochondrial bioenergetics in older adults. | Lalia, Antigoni Z; Dasari, Surendra; Robinson, Matthew M; Abid, Hinnah; Morse, Dawn M; Klaus, Katherine A; Lanza, Ian R | Aging. | 2017 Apr; | 28379838 | |
| Inhibition of spore germination, growth, and toxin activity of clinically relevant C. difficile strains by gut microbiota derived secondary bile acids. | Thanissery, Rajani; Winston, Jenessa A; Theriot, Casey M | Anaerobe. | 2017 Mar 06; | 28279860 | |
| Enhanced Protein Translation Underlies Improved Metabolic and Physical Adaptations to Different Exercise Training Modes in Young and Old Humans. | Robinson, Matthew M; Dasari, Surendra; Konopka, Adam R; Johnson, Matthew L; Manjunatha, S; Esponda, Raul Ruiz; Carter, Rickey E; Lanza, Ian R; Nair, K Sreekumaran | Cell metabolism. | 2017 Mar 07; | 28273480 | |
| Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation. | Koelmel, Jeremy P; Kroeger, Nicholas M; Gill, Emily L; Ulmer, Candice Z; Bowden, John A; Patterson, Rainey E; Yost, Richard A; Garrett, Timothy J | Journal of the American Society for Mass Spectrometry. | 2017 May; | 28265968 | |
| Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation. | Koelmel, Jeremy P; Ulmer, Candice Z; Jones, Christina M; Yost, Richard A; Bowden, John A | Biochimica et biophysica acta. | 2017 Mar 02; | 28263877 | |
| NMR-based Stable Isotope Resolved Metabolomics in systems biochemistry. | Lane, Andrew N; Fan, Teresa W-M | Archives of biochemistry and biophysics. | 2017 Mar 02; | 28263717 | |
| Inhibition of soluble epoxide hydrolase as a novel approach to high dose diazepam induced hypotension. | Ulu, Arzu; Inceoglu, Bora; Yang, Jun; Singh, Vikrant; Vito, Stephen; Wulff, Heike; Hammock, Bruce D | Journal of clinical toxicology. | 2016 Jun; | 28255523 | |
| Coenzyme A thioester formation of 11- and 15-oxo-eicosatetraenoic acid. | Mesaros, Clementina; Arroyo, Alejandro D; Blair, Ian A; Snyder, Nathaniel W | Prostaglandins & other lipid mediators. | 2017 Feb 24; | 28238887 | |
| An Intestinal Farnesoid X Receptor-Ceramide Signaling Axis Modulates Hepatic Gluconeogenesis in Mice. | Xie, Cen; Jiang, Changtao; Shi, Jingmin; Gao, Xiaoxia; Sun, Dongxue; Sun, Lulu; Wang, Ting; Takahashi, Shogo; Anitha, Mallappa; Krausz, Kristopher W; Patterson, Andrew D; Gonzalez, Frank J | Diabetes. | 2017 Mar; | 28223344 | |
| Effects of Metformin and a Mammalian Target of Rapamycin (mTOR) ATP-Competitive Inhibitor on Targeted Metabolomics in Pancreatic Cancer Cell Line. | Soliman, Ghada A; Steenson, Sharalyn M; Etekpo, Asserewou H | Metabolomics : open access. | 2016; | 28217402 | |
| Presence of arachidonoyl-carnitine is associated with adverse cardiometabolic responses in hypertensive patients treated with atenolol. | Weng, Liming; Gong, Yan; Culver, Jeffrey; Gardell, Stephen J; Petucci, Christopher; Morse, Alison M; Frye, Reginald F; Turner, Stephen T; Chapman, Arlene; Boerwinkle, Eric; Gums, John; Beitelshees, Amber L; Borum, Peggy R; Johnson, Julie A; Garrett, Timot | Metabolomics : Official journal of the Metabolomic Society. | 2016 10; | 28217401 | |
| Epimetabolites: discovering metabolism beyond building and burning. | Showalter, Megan R; Cajka, Tomas; Fiehn, Oliver | Current opinion in chemical biology. | 2017 Feb; | 28213207 | |
| Differential responses of human dendritic cells to metabolites from the oral/airway microbiome. | Whiteson, K; Agrawal, S; Agrawal, A | Clinical and experimental immunology. | 2017 Jun; | 28194750 | |
| Comprehensive Metabolite Identification Strategy Using Multiple Two-Dimensional NMR Spectra of a Complex Mixture Implemented in the COLMARm Web Server. | Bingol, Kerem; Li, Da-Wei; Zhang, Bo; Brüschweiler, Rafael | Analytical chemistry. | 2016 Dec 20; | 28193069 | |
| Dimethyl Itaconate Is Not Metabolized into Itaconate Intracellularly. | ElAzzouny, Mahmoud; Tom, Christopher T M B; Evans, Charles R; Olson, Lori L; Tanga, Mary J; Gallagher, Katherine A; Martin, Brent R; Burant, Charles F | The Journal of biological chemistry. | 2017 Mar 24; | 28188288 | |
| Metabolites as biomarkers of adverse reactions following vaccination: A pilot study using nuclear magnetic resonance metabolomics. | McClenathan, Bruce M; Stewart, Delisha A; Spooner, Christina E; Pathmasiri, Wimal W; Burgess, Jason P; McRitchie, Susan L; Choi, Y Sammy; Sumner, Susan C J | Vaccine. | 2017 Mar 01; | 28169076 | |
| Head and Neck Squamous Cell Carcinoma Metabolism Draws on Glutaminolysis, and Stemness Is Specifically Regulated by Glutaminolysis via Aldehyde Dehydrogenase. | Kamarajan, Pachiyappan; Rajendiran, Thekkelnaycke M; Kinchen, Jason; Bermúdez, Mercedes; Danciu, Theodora; Kapila, Yvonne L | Journal of proteome research. | 2017 Mar 03; | 28168879 | |
| Perspectives and Expectations in Structural Bioinformatics of Metalloproteins. | Yao, Sen; Flight, Robert M; Rouchka, Eric C; Moseley, Hunter N B | Proteins. | 2017 Feb 07; | 28168746 | |
| Probing the metabolic phenotype of breast cancer cells by multiple tracer Stable Isotope Resolved Metabolomics. | Lane, Andrew N; Tan, Julie; Wang, Yali; Yan, Jun; Higashi, Richard M; Fan, Teresa W-M | Metabolic engineering. | 2017 Feb 02; | 28163219 | |
| 2-Hydroxyglutarate produced by neomorphic IDH mutations suppresses homologous recombination and induces PARP inhibitor sensitivity. | Sulkowski, Parker L; Corso, Christopher D; Robinson, Nathaniel D; Scanlon, Susan E; Purshouse, Karin R; Bai, Hanwen; Liu, Yanfeng; Sundaram, Ranjini K; Hegan, Denise C; Fons, Nathan R; Breuer, Gregory A; Song, Yuanbin; Mishra-Gorur, Ketu; De Feyter, Henk | Science translational medicine. | 2017 Feb 01; | 28148839 | |
| A new sensitive LC/MS/MS analysis of vitamin D metabolites using a click derivatization reagent, 2-nitrosopyridine. | Wan, Debin; Yang, Jun; Barnych, Bogdan; Hwang, Sung Hee; Lee, Kin Sing Stephen; Cui, Yongliang; Niu, Jun; Watsky, Mitchell A; Hammock, Bruce D | Journal of lipid research. | 2017 Apr; | 28148721 | |
| Aberrant coordination geometries discovered in the most abundant metalloproteins. | Yao, Sen; Flight, Robert M; Rouchka, Eric C; Moseley, Hunter N B | Proteins. | 2017 Jan 31; | 28142195 | |
| Inference of cancer mechanisms through computational systems analysis. | Qi, Zhen; Voit, Eberhard O | Molecular bioSystems. | 2017 Feb 28; | 28112324 | |
| Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase. | Mafu, Sibongile; Karunanithi, Prema Sambandaswami; Palazzo, Teresa Ann; Harrod, Bronwyn Lee; Rodriguez, Selina Marakana; Mollhoff, Iris Natalie; O'Brien, Terrence Edward; Tong, Shen; Fiehn, Oliver; Tantillo, Dean J; Bohlmann, Jörg; Zerbe, Philipp | Proceedings of the National Academy of Sciences of the United States of America. | 2017 Jan 31; | 28096378 | |
| New-generation mass spectrometry expands the toolbox of cell and developmental biology. | Lombard-Banek, Camille; Portero, Erika P; Onjiko, Rosemary M; Nemes, Peter | Genesis (New York, N.Y. : 2000). | 2017 Jan; | 28095647 | |
| LipidPioneer : A Comprehensive User-Generated Exact Mass Template for Lipidomics. | Ulmer, Candice Z; Koelmel, Jeremy P; Ragland, Jared M; Garrett, Timothy J; Bowden, John A | Journal of the American Society for Mass Spectrometry. | 2017 Mar; | 28074328 | |
| Effect of a Soluble Epoxide Hydrolase Inhibitor, UC1728, on LPS-Induced Uveitis in the Rabbit. | McLellan, Gillian J; Aktas, Zeynep; Hennes-Beean, Elizabeth; Kolb, Aaron W; Larsen, Inna V; Schmitz, Emily J; Clausius, Hilary R; Yang, Jun; Hwang, Sung Hee; Morisseau, Christophe; Inceoglu, Bora; Hammock, Bruce D; Brandt, Curtis R | Journal of ocular biology. | 2016 Jan; | 28066796 | |
| Glycosylation Signatures of Inflammation Identify Cardiovascular Risk: Some Glyc It Hot. | Lawler, Patrick R; Mora, Samia | Circulation research. | 2016 Nov 11; | 28051777 | |
| Magic Angle Spinning NMR Metabolomics. | Hu, Jian Zhi | Metabolomics : open access. | 2016 Jun; | 28042496 | |
| Considerations when choosing a genetic model organism for metabolomics studies. | Reed, Laura K; Baer, Charles F; Edison, Arthur S | Current opinion in chemical biology. | 2017 Feb; | 28025166 | |
| Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET). | Sumner, Lloyd W; Styczynski, Mark; McLean, John; Fiehn, Oliver; Jander, Georg; Liao, James; Sumner, Susan; Britz-McKibbin, Philip; Welti, Ruth; Jones, A Daniel; Dorrestein, Pieter C; Bearden, Dan; Kaddurah-Daouk, Rima | Metabolomics : Official journal of the Metabolomic Society. | 2015 Feb; | 28018159 | |
| Neonatal Metabolomic Profiles Related to Prenatal Arsenic Exposure. | Laine, Jessica E; Bailey, Kathryn A; Olshan, Andrew F; Smeester, Lisa; Drobná, Zuzana; Stýblo, Miroslav; Douillet, Christelle; García-Vargas, Gonzalo; Rubio-Andrade, Marisela; Pathmasiri, Wimal; McRitchie, Susan; Sumner, Susan J; Fry, Rebecca C | Environmental science & technology. | 2017 Jan 03; | 27997141 | |
| The importance of accurately correcting for the natural abundance of stable isotopes. | Midani, Firas S; Wynn, Michelle L; Schnell, Santiago | Analytical biochemistry. | 2017 Mar 01; | 27989585 | |
| Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators. | Flitter, Becca A; Hvorecny, Kelli L; Ono, Emiko; Eddens, Taylor; Yang, Jun; Kwak, Daniel H; Bahl, Christopher D; Hampton, Thomas H; Morisseau, Christophe; Hammock, Bruce D; Liu, Xinyu; Lee, Janet S; Kolls, Jay K; Levy, Bruce D; Madden, Dean R; Bomberger, Jennifer M | Proceedings of the National Academy of Sciences of the United States of America. | 2017 Jan 03; | 27980032 | |
| Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis. | Kind, Tobias; Cho, Eunho; Park, Taeeun D; Deng, Nan; Liu, Zhenqiu; Lee, Tack; Fiehn, Oliver; Kim, Jayoung | Scientific reports. | 2016 Dec 15; | 27976711 | |
| Tandem Mass Spectrometry in Combination with Product Ion Mobility for the Identification of Phospholipids. | Berry, Karin A Zemski; Barkley, Robert M; Berry, Joseph J; Hankin, Joseph A; Hoyes, Emmy; Brown, Jeffery M; Murphy, Robert C | Analytical chemistry. | 2017 Jan 03; | 27958700 | |
| Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies. | Kyle, Jennifer E; Casey, Cameron P; Stratton, Kelly G; Zink, Erika M; Kim, Young-Mo; Zheng, Xueyun; Monroe, Matthew E; Weitz, Karl K; Bloodsworth, Kent J; Orton, Daniel J; Ibrahim, Yehia M; Moore, Ronald J; Lee, Christine G; Pedersen, Catherine; Orwoll, Eric; Smith, Richard D; Burnum-Johnson, Kristin E; Baker, Erin S | Rapid communications in mass spectrometry : RCM. | 2017 Mar 15; | 27958645 | |
| Ketogenesis contributes to intestinal cell differentiation. | Wang, Qingding; Zhou, Yuning; Rychahou, Piotr; Fan, Teresa W-M; Lane, Andrew N; Weiss, Heidi L; Evers, B Mark | Cell death and differentiation. | 2017 Mar; | 27935584 | |
| Glioblastoma therapy can be augmented by targeting IDH1-mediated NADPH biosynthesis. | Wahl, Daniel R; Dresser, Joseph; Wilder-Romans, Kari; Parsels, Joshua D; Zhao, Shuang G; Davis, Mary; Zhao, Lili; Kachman, Maureen; Wernisch, Stefanie; Burant, Charles F; Morgan, Meredith A; Feng, Felix Y; Speers, Corey; Lyssiotis, Costas A; Lawrence, The | Cancer research. | ; | 27923831 | |
| Adipose Fatty Acid Binding Protein Promotes Saturated Fatty Acid-Induced Macrophage Cell Death through Enhancing Ceramide Production. | Zhang, Yuwen; Rao, Enyu; Zeng, Jun; Hao, Jiaqing; Sun, Yanwen; Liu, Shujun; Sauter, Edward R; Bernlohr, David A; Cleary, Margot P; Suttles, Jill; Li, Bing | Journal of immunology (Baltimore, Md. : 1950). | 2017 Jan 15; | 27920274 | |
| Are We Ready to Use the Omics Strategies for Precision Medicine? | Kim, Jayoung | International neurourology journal. | 2016 Nov; | 27915470 | |
| Experimental and Theoretical Investigation of Sodiated Multimers of Steroid Epimers with Ion Mobility-Mass Spectrometry. | Chouinard, Christopher D; Cruzeiro, Vinícius Wilian D; Roitberg, Adrian E; Yost, Richard A | Journal of the American Society for Mass Spectrometry. | 2017 Feb; | 27914014 | |
| A Targeted Metabolomics Assay to Measure Eight Purines in the Diet of Common Bottlenose Dolphins, Tursiops truncatus. | Ardente, A J; Garrett, T J; Wells, R S; Walsh, M; Smith, C R; Colee, J; Hill, R C | Journal of chromatography & separation techniques. | ; | 27904786 | |
| Mass spectrometry analysis shows the biosynthetic pathways supported by pyruvate carboxylase in highly invasive breast cancer cells. | Phannasil, Phatchariya; Ansari, Israr-Ul H; El Azzouny, Mahmoud; Longacre, Melissa J; Rattanapornsompong, Khanti; Burant, Charles F; MacDonald, Michael J; Jitrapakdee, Sarawut | Biochimica et biophysica acta. | 2017 Feb; | 27890529 | |
| Characterization of an immobilized enzyme reactor for on-line protein digestion. | Moore, Stephanie; Hess, Stephanie; Jorgenson, James | Journal of chromatography. A. | 2016 Dec 09; | 27876348 | |
| Sweat lipid mediator profiling: a noninvasive approach for cutaneous research. | Agrawal, Karan; Hassoun, Lauren A; Foolad, Negar; Pedersen, Theresa L; Sivamani, Raja K; Newman, John W | Journal of lipid research. | 2017 Jan; | 27875258 | |
| Natural products as mediators of disease. | Garg, Neha; Luzzatto-Knaan, Tal; Melnik, Alexey V; Caraballo-Rodríguez, Andrés Mauricio; Floros, Dimitrios J; Petras, Daniel; Gregor, Rachel; Dorrestein, Pieter C; Phelan, Vanessa V | Natural product reports. | 2017 Feb 01; | 27874907 | |
| Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity. | Ma, Siming; Upneja, Akhil; Galecki, Andrzej; Tsai, Yi-Miau; Burant, Charles F; Raskind, Sasha; Zhang, Quanwei; Zhang, Zhengdong D; Seluanov, Andrei; Gorbunova, Vera; Clish, Clary B; Miller, Richard A; Gladyshev, Vadim N | eLife. | 2016 Nov 22; | 27874830 | |
| Differences in testosterone and its precursors by sex of the offspring in meconium. | Frey, Alexander J; Park, Bo Y; Schriver, Emily R; Feldman, Daniel R; Parry, Samuel; Croen, Lisa A; Fallin, Daniele M; Hertz-Picciotto, Irva; Newschaffer, Craig J; Snyder, Nathaniel W | The Journal of steroid biochemistry and molecular biology. | ; | 27871978 | |
| Calcium Reduces Liver Injury in Mice on a High-Fat Diet: Alterations in Microbial and Bile Acid Profiles. | Nadeem Aslam, Muhammad; Bassis, Christine M; Zhang, Li; Zaidi, Sameer; Varani, James; Bergin, Ingrid L | PloS one. | 2016; | 27851786 | |
| Differential Regulation of Macrophage Glucose Metabolism by Macrophage Colony-stimulating Factor and Granulocyte-Macrophage Colony-stimulating Factor: Implications for (18)F FDG PET Imaging of Vessel Wall Inflammation. | Tavakoli, Sina; Short, John D; Downs, Kevin; Nguyen, Huynh Nga; Lai, Yanlai; Zhang, Wei; Jerabek, Paul; Goins, Beth; Sadeghi, Mehran M; Asmis, Reto | Radiology. | 2017 Apr; | 27849433 | |
| Bipolar disorder moderates associations between linoleic acid and markers of inflammation. | Chang, Ya-Wen; Assari, Shervin; Prossin, Alan R; Stertz, Laura; McInnis, Melvin G; Evans, Simon J | Journal of psychiatric research. | 2017 Feb; | 27821270 | |
| Nutrient Transporter Expression in the Jejunum in Relation to Body Mass Index in Patients Undergoing Bariatric Surgery. | Irving, Brian A; Wood, G Craig; Bennotti, Peter N; Babu, Ellappan; Deshpande, Abhishek; Lent, Michelle R; Petrick, Anthony; Gabrielsen, Jon; Strodel, William; Gerhard, Glenn S; Still, Christopher D; Ganapathy, Vadivel; Rolston, David D K | Nutrients. | 2016 Oct 29; | 27801863 | |
| Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival. | Fahrmann, Johannes F; Grapov, Dmitry; Phinney, Brett S; Stroble, Carol; DeFelice, Brian C; Rom, William; Gandara, David R; Zhang, Yanhong; Fiehn, Oliver; Pass, Harvey; Miyamoto, Suzanne | Clinical proteomics. | 2016; | 27799870 | |
| Interleukin 10 Restores Gastric Emptying, Electrical Activity, and Interstitial Cells of Cajal Networks in Diabetic Mice. | Choi, Kyoung Moo; Gibbons, Simon J; Sha, Lei; Beyder, Arthur; Verhulst, Pieter-Jan; Cipriani, Gianluca; Phillips, Jessica E; Bauer, Anthony J; Ordog, Tamas; Camp, Jon J; Ge, Xin; Bharucha, Adil E; Linden, David R; Szurszewski, Joseph H; Kashyap, Purna C; Farrugia, Gianrico | Cellular and molecular gastroenterology and hepatology. | 2016 Jul; | 27795979 | |
| Monitoring cell secretions on microfluidic chips using solid-phase extraction with mass spectrometry. | Dugan, Colleen E; Grinias, James P; Parlee, Sebastian D; El-Azzouny, Mahmoud; Evans, Charles R; Kennedy, Robert T | Analytical and bioanalytical chemistry. | 2016 Oct 19; | 27761614 | |
| Transcription Factor ZBP-89 Drives a Feedforward Loop of ?-Catenin Expression in Colorectal Cancer. | Essien, Bryan E; Sundaresan, Sinju; Ocadiz-Ruiz, Ramon; Chavis, Aaron; Tsao, Amy C; Tessier, Arthur J; Hayes, Michael M; Photenhauer, Amanda; Saqui-Salces, Milena; Kang, Anthony J; Shah, Yatrik M; Gy?rffy, Balazs; Merchant, Juanita L | Cancer research. | 2016 Dec 01; | 27758879 | |
| Validation of highly sensitive simultaneous targeted and untargeted analysis of keto-steroids by Girard P derivatization and stable isotope dilution-liquid chromatography-high resolution mass spectrometry. | Frey, Alexander J; Wang, Qingqing; Busch, Christine; Feldman, Daniel; Bottalico, Lisa; Mesaros, Clementina A; Blair, Ian A; Vachani, Anil; Snyder, Nathaniel W | Steroids. | 2016 Oct 13; | 27743906 | |
| An ?-3-enriched diet alone does not attenuate CCl4-induced hepatic fibrosis. | Harris, Todd R; Kodani, Sean; Yang, Jun; Imai, Denise M; Hammock, Bruce D | The Journal of nutritional biochemistry. | 2016 Dec; | 27732914 | |
| Acylcarnitines as markers of exercise-associated fuel partitioning, xenometabolism, and potential signals to muscle afferent neurons. | Zhang, Jie; Light, Alan R; Hoppel, Charles L; Campbell, Caitlin; Chandler, Carol J; Burnett, Dustin J; Souza, Elaine C; Casazza, Gretchen A; Hughen, Ronald W; Keim, Nancy L; Newman, John W; Hunter, Gary R; Fernandez, Jose R; Garvey, W Timothy; Harper, Mary-Ellen; Fiehn, Oliver; Adams, Sean H | Experimental physiology. | 2017 Jan 01; | 27730694 | |
| Inaccurate quantitation of palmitate in metabolomics and isotope tracer studies due to plastics. | Yao, Cong-Hui; Liu, Gao-Yuan; Yang, Kui; Gross, Richard W; Patti, Gary J | Metabolomics : Official journal of the Metabolomic Society. | 2016 Sep; | 27721678 | |
| Lipid metabolism is associated with developmental epigenetic programming. | Marchlewicz, Elizabeth H; Dolinoy, Dana C; Tang, Lu; Milewski, Samantha; Jones, Tamara R; Goodrich, Jaclyn M; Soni, Tanu; Domino, Steven E; Song, Peter X K; F Burant, Charles; Padmanabhan, Vasantha | Scientific reports. | 2016 Oct 07; | 27713555 | |
| Development of a 45kpsi ultrahigh pressure liquid chromatography instrument for gradient separations of peptides using long microcapillary columns and sub-2?m particles. | Grinias, Kaitlin M; Godinho, Justin M; Franklin, Edward G; Stobaugh, Jordan T; Jorgenson, James W | Journal of chromatography. A. | 2016 Oct 21; | 27702615 | |
| Tissue-specific metabolic reprogramming drives nutrient flux in diabetic complications. | Sas, Kelli M; Kayampilly, Pradeep; Byun, Jaeman; Nair, Viji; Hinder, Lucy M; Hur, Junguk; Zhang, Hongyu; Lin, Chengmao; Qi, Nathan R; Michailidis, George; Groop, Per-Henrik; Nelson, Robert G; Darshi, Manjula; Sharma, Kumar; Schelling, Jeffrey R; Sedor, Jo | JCI insight. | 2016 Sep 22; | 27699244 | |
| The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates. | Khadempour, Lily; Burnum-Johnson, Kristin E; Baker, Erin S; Nicora, Carrie D; Webb-Robertson, Bobbie-Jo M; White 3rd, Richard A; Monroe, Matthew E; Huang, Eric L; Smith, Richard D; Currie, Cameron R | Molecular ecology. | 2016 Nov; | 27696597 | |
| Disposition of intravenously or orally administered silver nanoparticles in pregnant rats and the effect on the biochemical profile in urine. | Fennell, Timothy R; Mortensen, Ninell P; Black, Sherry R; Snyder, Rodney W; Levine, Keith E; Poitras, Eric; Harrington, James M; Wingard, Christopher J; Holland, Nathan A; Pathmasiri, Wimal; Sumner, Susan C J | Journal of applied toxicology : JAT. | 2017 May; | 27696470 | |
| Tandem Mass Spectrometry of Novel Ether-Linked Phospholipid Analogs of Anionic Pulmonary Surfactant Phospholipids. | Fickes, Rachel; Voelker, Dennis R; Berry, Karin Zemski; Murphy, Robert C | Rapid communications in mass spectrometry : RCM. | 2016 Sep 30; | 27689848 | |
| Knockdown of ATP citrate lyase in pancreatic beta cells does not inhibit insulin secretion or glucose flux and implicates the acetoacetate pathway in insulin secretion. | El Azzouny, Mahmoud; Longacre, Melissa J; Ansari, Israr-Ul H; Kennedy, Robert T; Burant, Charles F; MacDonald, Michael J | Molecular metabolism. | 2016 Oct; | 27689010 | |
| Rescue of Metabolic Alterations in AR113Q Skeletal Muscle by Peripheral Androgen Receptor Gene Silencing. | Giorgetti, Elisa; Yu, Zhigang; Chua, Jason P; Shimamura, Ryosuke; Zhao, Lili; Zhu, Fan; Venneti, Sriram; Pennuto, Maria; Guan, Yuanfang; Hung, Gene; Lieberman, Andrew P | Cell reports. | ; | 27681426 | |
| Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry. | Burnum-Johnson, Kristin E; Nie, Song; Casey, Cameron P; Monroe, Matthew E; Orton, Daniel J; Ibrahim, Yehia M; Gritsenko, Marina A; Clauss, Therese R W; Shukla, Anil K; Moore, Ronald J; Purvine, Samuel O; Shi, Tujin; Qian, Weijun; Liu, Tao; Baker, Erin S; Smith, Richard D | Molecular & cellular proteomics : MCP. | ; | 27670688 | |
| Expression of the aryl hydrocarbon receptor contributes to the establishment of intestinal microbial community structure in mice. | Murray, Iain A; Nichols, Robert G; Zhang, Limin; Patterson, Andrew D; Perdew, Gary H | Scientific reports. | 2016 Sep 23; | 27659481 | |
| Eulogy for the Metabolic Clinical Investigator? | Vella, Adrian; Jensen, Michael D; Nair, K Sreekumaran | Diabetes. | 2016 Oct; | 27659223 | |
| An Intestinal Microbiota-Farnesoid X Receptor Axis Modulates Metabolic Disease. | Gonzalez, Frank J; Jiang, Changtao; Patterson, Andrew D | Gastroenterology. | 2016 Nov; | 27639801 | |
| Lactate metabolism is associated with mammalian mitochondria. | Chen, Ying-Jr; Mahieu, Nathaniel G; Huang, Xiaojing; Singh, Manmilan; Crawford, Peter A; Johnson, Stephen L; Gross, Richard W; Schaefer, Jacob; Patti, Gary J | Nature chemical biology. | 2016 Sep 12; | 27618187 | |
| Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses. | Zheng, Xueyun; Zhang, Xing; Schocker, Nathaniel S; Renslow, Ryan S; Orton, Daniel J; Khamsi, Jamal; Ashmus, Roger A; Almeida, Igor C; Tang, Keqi; Costello, Catherine E; Smith, Richard D; Michael, Katja; Baker, Erin S | Analytical and bioanalytical chemistry. | 2017 Jan; | 27604268 | |
| Blood type biochemistry and human disease. | Ewald, D Rose; Sumner, Susan C J | Wiley interdisciplinary reviews. Systems biology and medicine. | 2016 Sep 7; | 27599872 | |
| Neonatal NET-inhibitory factor and related peptides inhibit neutrophil extracellular trap formation. | Yost, Christian C; Schwertz, Hansjörg; Cody, Mark J; Wallace, Jared A; Campbell, Robert A; Vieira-de-Abreu, Adriana; Araujo, Claudia V; Schubert, Sebastian; Harris, Estelle S; Rowley, Jesse W; Rondina, Matthew T; Fulcher, James M; Koening, Curry L; Weyric | The Journal of clinical investigation. | 2016 Oct 03; | 27599294 | |
| The future of NMR-based metabolomics. | Markley, John L; Brüschweiler, Rafael; Edison, Arthur S; Eghbalnia, Hamid R; Powers, Robert; Raftery, Daniel; Wishart, David S | Current opinion in biotechnology. | 2016 Aug 27; | 27580257 | |
| Knowns and unknowns in metabolomics identified by multidimensional NMR and hybrid MS/NMR methods. | Bingol, Kerem; Brüschweiler, Rafael | Current opinion in biotechnology. | 2017 Feb; | 27552705 | |
| Insulin and IGF-1 receptors regulate FoxO-mediated signaling in muscle proteostasis. | O'Neill, Brian T; Lee, Kevin Y; Klaus, Katherine; Softic, Samir; Krumpoch, Megan T; Fentz, Joachim; Stanford, Kristin I; Robinson, Matthew M; Cai, Weikang; Kleinridders, Andre; Pereira, Renata O; Hirshman, Michael F; Abel, E Dale; Accili, Domenico; Goodyear, Laurie J; Nair, K Sreekumaran; Kahn, C Ronald | The Journal of clinical investigation. | 2016 Sep 1; | 27525440 | |
| Systems Analysis of the Complement-Induced Priming Phase of Liver Regeneration. | Min, Jun S; DeAngelis, Robert A; Reis, Edimara S; Gupta, Shakti; Maurya, Mano R; Evans, Charles; Das, Arun; Burant, Charles; Lambris, John D; Subramaniam, Shankar | Journal of immunology (Baltimore, Md. : 1950). | 2016 Sep 15; | 27511733 | |
| Pancreatic stellate cells support tumour metabolism through autophagic alanine secretion. | Sousa, Cristovão M; Biancur, Douglas E; Wang, Xiaoxu; Halbrook, Christopher J; Sherman, Mara H; Zhang, Li; Kremer, Daniel; Hwang, Rosa F; Witkiewicz, Agnes K; Ying, Haoqiang; Asara, John M; Evans, Ronald M; Cantley, Lewis C; Lyssiotis, Costas A; Kimmelman, Alec C | Nature. | 2016 Aug 25; | 27509858 | |
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| Preclinical models for interrogating drug action in human cancers using Stable Isotope Resolved Metabolomics (SIRM). | Lane, Andrew N; Higashi, Richard M; Fan, Teresa W-M | Metabolomics : Official journal of the Metabolomic Society. | 2016 Jul; | 27489532 | |
| Muscle-specific loss of Bmal1 leads to disrupted tissue glucose metabolism and systemic glucose homeostasis. | Harfmann, Brianna D; Schroder, Elizabeth A; Kachman, Maureen T; Hodge, Brian A; Zhang, Xiping; Esser, Karyn A | Skeletal muscle. | 2016; | 27486508 | |
| Fatty Acid Oxidation Mediated by Acyl-CoA Synthetase Long Chain 3 Is Required for Mutant KRAS Lung Tumorigenesis. | Padanad, Mahesh S; Konstantinidou, Georgia; Venkateswaran, Niranjan; Melegari, Margherita; Rindhe, Smita; Mitsche, Matthew; Yang, Chendong; Batten, Kimberly; Huffman, Kenneth E; Liu, Jingwen; Tang, Ximing; Rodriguez-Canales, Jaime; Kalhor, Neda; Shay, Jerry W; Minna, John D; McDonald, Jeffrey; Wistuba, Ignacio I; DeBerardinis, Ralph J; Scaglioni, Pier Paolo | Cell reports. | 2016 Aug 9; | 27477280 | |
| Circulating levels of endocannabinoids and oxylipins altered by dietary lipids in older women are likely associated with previously identified gene targets. | Watkins, Bruce A; Kim, Jeffrey; Kenny, Anne; Pedersen, Theresa L; Pappan, Kirk L; Newman, John W | Biochimica et biophysica acta. | 2016 11; | 27452639 | |
| Metabolomics Analysis of Hormone-Responsive and Triple-Negative Breast Cancer Cell Responses to Paclitaxel Identify Key Metabolic Differences. | Stewart, Delisha A; Winnike, Jason H; McRitchie, Susan L; Clark, Robert F; Pathmasiri, Wimal W; Sumner, Susan J | Journal of proteome research. | 2016 Sep 2; | 27447733 | |
| Aptamer-Based Proteomic Profiling Reveals Novel Candidate Biomarkers and Pathways in Cardiovascular Disease. | Ngo, Debby; Sinha, Sumita; Shen, Dongxiao; Kuhn, Eric W; Keyes, Michelle J; Shi, Xu; Benson, Mark D; O'Sullivan, John F; Keshishian, Hasmik; Farrell, Laurie A; Fifer, Michael A; Vasan, Ramachandran S; Sabatine, Marc S; Larson, Martin G; Carr, Steven A; Wang, Thomas J; Gerszten, Robert E | Circulation. | 2016 Jul 26; | 27444932 | |
| Release of skeletal muscle peptide fragments identifies individual proteins degraded during insulin deprivation in type 1 diabetic humans and mice. | Robinson, Matthew M; Dasari, Surendra; Karakelides, Helen; Bergen 3rd, H Robert; Nair, K Sreekumaran | American journal of physiology. Endocrinology and metabolism. | 2016 Sep 01; | 27436610 | |
| Preterm neonatal urinary renal developmental and acute kidney injury metabolomic profiling: an exploratory study. | Mercier, Kelly; McRitchie, Susan; Pathmasiri, Wimal; Novokhatny, Andrew; Koralkar, Rajesh; Askenazi, David; Brophy, Patrick D; Sumner, Susan | Pediatric nephrology (Berlin, Germany). | 2016 Jul 19; | 27435284 | |
| Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data. | Barnes, Stephen; Benton, H Paul; Casazza, Krista; Cooper, Sara J; Cui, Xiangqin; Du, Xiuxia; Engler, Jeffrey; Kabarowski, Janusz H; Li, Shuzhao; Pathmasiri, Wimal; Prasain, Jeevan K; Renfrow, Matthew B; Tiwari, Hemant K | Journal of mass spectrometry : JMS. | 2016 Jul; | 27434804 | |
| Perinatal triphenyl phosphate exposure accelerates type 2 diabetes onset and increases adipose accumulation in UCD-type 2 diabetes mellitus rats. | Green, Adrian J; Graham, James L; Gonzalez, Eduardo A; La Frano, Michael R; Petropoulou, Syrago-Styliani E; Park, June-Soo; Newman, John W; Stanhope, Kimber L; Havel, Peter J; La Merrill, Michele A | Reproductive toxicology (Elmsford, N.Y.). | 2016 Jul 12; | 27421578 | |
| Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software. | Tsugawa, Hiroshi; Kind, Tobias; Nakabayashi, Ryo; Yukihira, Daichi; Tanaka, Wataru; Cajka, Tomas; Saito, Kazuki; Fiehn, Oliver; Arita, Masanori | Analytical chemistry. | 2016 Aug 16; | 27419259 | |
| Mitochondrial Pyruvate Import Promotes Long-Term Survival of Antibody-Secreting Plasma Cells. | Lam, Wing Y; Becker, Amy M; Kennerly, Krista M; Wong, Rachel; Curtis, Jonathan D; Llufrio, Elizabeth M; McCommis, Kyle S; Fahrmann, Johannes; Pizzato, Hannah A; Nunley, Ryan M; Lee, Jieun; Wolfgang, Michael J; Patti, Gary J; Finck, Brian N; Pearce, Erika L; Bhattacharya, Deepta | Immunity. | 2016 Jul 19; | 27396958 | |
| Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. | Arabyan, Narine; Park, Dayoung; Foutouhi, Soraya; Weis, Allison M; Huang, Bihua C; Williams, Cynthia C; Desai, Prerak; Shah, Jigna; Jeannotte, Richard; Kong, Nguyet; Lebrilla, Carlito B; Weimer, Bart C | Scientific reports. | 2016 Jul 08; | 27389966 | |
| A Genetic Response Score for Hydrochlorothiazide Use: Insights From Genomics and Metabolomics Integration. | Shahin, Mohamed H; Gong, Yan; McDonough, Caitrin W; Rotroff, Daniel M; Beitelshees, Amber L; Garrett, Timothy J; Gums, John G; Motsinger-Reif, Alison; Chapman, Arlene B; Turner, Stephen T; Boerwinkle, Eric; Frye, Reginald F; Fiehn, Oliver; Cooper-DeHoff, Rhonda M; Kaddurah-Daouk, Rima; Johnson, Julie A | Hypertension. | 2016 Jul 5; | 27381900 | |
| Evaluation of coverage, retention patterns, and selectivity of seven liquid chromatographic methods for metabolomics. | Wernisch, Stefanie; Pennathur, Subramaniam | Analytical and bioanalytical chemistry. | 2016 Jul 1; | 27370688 | |
| Ingestion of the epoxide hydrolase inhibitor AUDA modulates immune responses of the mosquito, Culex quinquefasciatus during blood feeding. | Xu, Jiawen; Morisseau, Christophe; Yang, Jun; Lee, Kin Sing Stephen; Kamita, Shizuo G; Hammock, Bruce D | Insect biochemistry and molecular biology. | 2016 Jun 28; | 27369469 | |
| Network-based pathway enrichment analysis with incomplete network information. | Ma, Jing; Shojaie, Ali; Michailidis, George | Bioinformatics (Oxford, England). | 2016 Oct 15; | 27357170 | |
| Association between plasma endocannabinoids and appetite in hemodialysis patients: A pilot study. | Friedman, Allon N; Kim, Jeffrey; Kaiser, Shaun; Pedersen, Theresa L; Newman, John W; Watkins, Bruce A | Nutrition research (New York, N.Y.). | 2016 Jul; | 27333956 | |
| Metabolomics dataset of PPAR-pan treated rat liver. | Ament, Zsuzsanna; West, James A; Stanley, Elizabeth; Li, Xuefei; Ashmore, Tom; Roberts, Lee D; Wright, Jayne; Nicholls, Andrew W; Griffin, Julian L | Data in brief. | 2016 Sep; | 27331087 | |
| Immune checkpoint blockade therapy for bladder cancer treatment. | Kim, Jayoung | Investigative and clinical urology. | 2016 Jun; | 27326412 | |
| Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion. | Faber, Franziska; Tran, Lisa; Byndloss, Mariana X; Lopez, Christopher A; Velazquez, Eric M; Kerrinnes, Tobias; Nuccio, Sean-Paul; Wangdi, Tamding; Fiehn, Oliver; Tsolis, Renée M; Bäumler, Andreas J | Nature. | 2016 Jun 30; | 27309805 | |
| NMR-based metabolomics reveals urinary metabolome modifications in female Sprague-Dawley rats by cranberry procyanidins. | Liu, Haiyan; Tayyari, Fariba; Edison, Arthur S; Su, Zhihua; Gu, Liwei | The Journal of nutritional biochemistry. | 2016 Aug; | 27309592 | |
| BatMass: a Java Software Platform for LC-MS Data Visualization in Proteomics and Metabolomics. | Avtonomov, Dmitry M; Raskind, Alexander; Nesvizhskii, Alexey I | Journal of proteome research. | 2016 Aug 05; | 27306858 | |
| Maternal Early Pregnancy Serum Metabolomics Profile and Abnormal Vaginal Bleeding as Predictors of Placental Abruption: A Prospective Study. | Gelaye, Bizu; Sumner, Susan J; McRitchie, Susan; Carlson, James E; Ananth, Cande V; Enquobahrie, Daniel A; Qiu, Chunfang; Sorensen, Tanya K; Williams, Michelle A | PloS one. | 2016; | 27300725 | |
| The Importance of the Biological Impact of Exposure to the Concept of the Exposome. | Dennis, Kristine K; Auerbach, Scott S; Balshaw, David M; Cui, Yuxia; Fallin, Margaret Daniele; Smith, Martyn T; Spira, Avrum; Sumner, Susan; Miller, Gary W | Environmental health perspectives. | 2016 Jun 3; | 27258438 | |
| Knockdown of triglyceride synthesis does not enhance palmitate lipotoxicity or prevent oleate-mediated rescue in rat hepatocytes. | Leamy, Alexandra K; Hasenour, Clinton M; Egnatchik, Robert A; Trenary, Irina A; Yao, Cong-Hui; Patti, Gary J; Shiota, Masakazu; Young, Jamey D | Biochimica et biophysica acta. | 2016 Sep; | 27249207 | |
| Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation. | Noecker, Cecilia; Eng, Alexander; Srinivasan, Sujatha; Theriot, Casey M; Young, Vincent B; Jansson, Janet K; Fredricks, David N; Borenstein, Elhanan | mSystems. | 2016 Jan-Feb; | 27239563 | |
| Antibiotic-Induced Alterations of the Gut Microbiota Alter Secondary Bile Acid Production and Allow for Clostridium difficile Spore Germination and Outgrowth in the Large Intes | Theriot, Casey M; Bowman, Alison A; Young, Vincent B | mSphere. | 2016 Jan-Feb; | 27239562 | |
| Microfluidics meets metabolomics to reveal the impact of Campylobacter jejuni infection on biochemical pathways. | Mortensen, Ninell P; Mercier, Kelly A; McRitchie, Susan; Cavallo, Tammy B; Pathmasiri, Wimal; Stewart, Delisha; Sumner, Susan J | Biomedical microdevices. | 2016 Jun; | 27231016 | |
| Mass Spectrometric Collisional Activation and Product Ion Mobility of Human Serum Neutral Lipid Extracts. | Hankin, Joseph A; Barkley, Robert M; Zemski-Berry, Karin; Deng, Yiming; Murphy, Robert C | Analytical chemistry. | 2016 Jun 21; | 27213895 | |
| Purinergic dysregulation in pulmonary hypertension. | Visovatti, Scott H; Hyman, Matthew C; Goonewardena, Sascha N; Anyanwu, Anuli C; Kanthi, Yogendra; Robichaud, Patrick; Wang, Jintao; Petrovic-Djergovic, Danica; Rattan, Rahul; Burant, Charles F; Pinsky, David J | American journal of physiology. Heart and circulatory physiology. | 2016 Jul 1; | 27208163 | |
| Serum Cortisol-to-Cortisone Ratio and Blood Pressure in Severe Obesity before and after Weight Loss. | Byrd, James B; Rothberg, Amy E; Chomic, Robert; Burant, Charles F; Brook, Robert D; Auchus, Richard J | Cardiorenal medicine. | 2015 Dec; | 27194991 | |
| An obligatory role for neurotensin in high-fat-diet-induced obesity. | Li, Jing; Song, Jun; Zaytseva, Yekaterina Y; Liu, Yajuan; Rychahou, Piotr; Jiang, Kai; Starr, Marlene E; Kim, Ji Tae; Harris, Jennifer W; Yiannikouris, Frederique B; Katz, Wendy S; Nilsson, Peter M; Orho-Melander, Marju; Chen, Jing; Zhu, Haining; Fahrenholz, Timothy; Higashi, Richard M; Gao, Tianyan; Morris, Andrew J; Cassis, Lisa A; Fan, Teresa W-M; Weiss, Heidi L; Dobner, Paul R; Melander, Olle; Jia, Jianhang; Evers, B Mark | Nature | 2016 May 19 | 27193687 | |
| Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification. | Kochen, Michael A; Chambers, Matthew C; Holman, Jay D; Nesvizhskii, Alexey I; Weintraub, Susan T; Belisle, John T; Islam, M Nurul; Griss, Johannes; Tabb, David L | Analytical chemistry | 2016 May 24 | 27186799 | |
| Superior Glucose Tolerance and Metabolomic Profiles, Independent of Adiposity, in HIV-Infected Women Compared With Men on Antiretroviral Therapy. | Koethe, John R; Jenkins, Cathy A; Petucci, Christopher; Culver, Jeffrey; Shepherd, Bryan E; Sterling, Timothy R | Medicine. | 2016 May; | 27175676 | |
| Impact of microbial derived secondary bile acids on colonization resistance against Clostridium difficile in the gastrointestinal tract. | Winston, Jenessa A; Theriot, Casey M | Anaerobe | 2016 May 7 | 27163871 | |
| Molecular Mechanisms and New Treatment Paradigm for Atrial Fibrillation. | Sirish, Padmini; Li, Ning; Timofeyev, Valeriy; Zhang, Xiao-Dong; Wang, Lianguo; Yang, Jun; Lee, Kin Sing Stephen; Bettaieb, Ahmed; Ma, Sin Mei; Lee, Jeong Han; Su, Demetria; Lau, Victor C; Myers, Richard E; Lieu, Deborah K; López, Javier E; Young, J Nilas; Yamoah, Ebenezer N; Haj, Fawaz; Ripplinger, Crystal M; Hammock, Bruce D; Chiamvimonvat, Nipavan | Circulation. Arrhythmia and electrophysiology. | 2016 May; | 27162031 | |
| Hyperglucagonemia Mitigates the Effect of Metformin on Glucose Production in Prediabetes. | Konopka, Adam R; Esponda, Raul Ruiz; Robinson, Matthew M; Johnson, Matthew L; Carter, Rickey E; Schiavon, Michele; Cobelli, Claudio; Wondisford, Fredric E; Lanza, Ian R; Nair, K Sreekumaran | Cell reports | 2016 May 17 | 27160898 | |
| Stable Isotope Resolved Metabolomics Studies in Ex Vivo TIssue Slices. | Fan, Teresa W-M; Lane, Andrew N; Higashi, Richard M | Bio-protocol | 2016 Feb 5 | 27158639 | |
| Plasma sphingolipid changes with autopsy-confirmed Lewy Body or Alzheimer's pathology. | Savica, Rodolfo; Murray, Melissa E; Persson, Xuan-Mai; Kantarci, Kejal; Parisi, Joseph E; Dickson, Dennis W; Petersen, Ronald C; Ferman, Tanis J; Boeve, Bradley F; Mielke, Michelle M | Alzheimer's & dementia (Amsterdam, Netherlands). | 2016; | 27152320 | |
| Metabolic changes associated with methionine stress sensitivity in MDA-MB-468 breast cancer cells. | Borrego, Stacey L; Fahrmann, Johannes; Datta, Rupsa; Stringari, Chiara; Grapov, Dmitry; Zeller, Michael; Chen, Yumay; Wang, Ping; Baldi, Pierre; Gratton, Enrico; Fiehn, Oliver; Kaiser, Peter | Cancer & metabolism. | 2016; | 27141305 | |
| Effector T Cells Abrogate Stroma-Mediated Chemoresistance in Ovarian Cancer. | Wang, Weimin; Kryczek, Ilona; Dost�l, Lubom�r; Lin, Heng; Tan, Lijun; Zhao, Lili; Lu, Fujia; Wei, Shuang; Maj, Tomasz; Peng, Dongjun; He, Gong; Vatan, Linda; Szeliga, Wojciech; Kuick, Rork; Kotarski, Jan; Tarkowski, Rafa?; Dou, Yali; Rattan, Ramandeep; Munkarah, Adnan; Liu, J Rebecca; Zou, Weiping | Cell | 2016 May 19 | 27133165 | |
| RhoC GTPase Is a Potent Regulator of Glutamine Metabolism and N-Acetylaspartate Production in Inflammatory Breast Cancer Cells. | Wynn, Michelle L; Yates, Joel A; Evans, Charles R; Van Wassenhove, Lauren D; Wu, Zhi Fen; Bridges, Sydney; Bao, Liwei; Fournier, Chelsea; Ashrafzadeh, Sepideh; Merrins, Matthew J; Satin, Leslie S; Schnell, Santiago; Burant, Charles F; Merajver, Sofia D | The Journal of biological chemistry. | 2016 Jun 24; | 27129239 | |
| An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis. | Chen, Jun; Wright, Kerry; Davis, John M; Jeraldo, Patricio; Marietta, Eric V; Murray, Joseph; Nelson, Heidi; Matteson, Eric L; Taneja, Veena | Genome medicine. | 2016; | 27102666 | |
| Bioactive lipid profiling reveals drug target engagement of a soluble epoxide hydrolase inhibitor in a murine model of tobacco smoke exposure. | Nording, Malin L; Yang, Jun; Hoang, Laura; Zamora, Vanessa; Uyeminami, Dale; Espiritu, Imelda; Pinkerton, Kent E; Hammock, Bruce D; Luria, Ayala | Journal of metabolomics | 2015 Apr | 27076918 | |
| Computational Modeling of Competitive Metabolism between ?3- and ?6-Polyunsaturated Fatty Acids in Inflammatory Macrophages. | Gupta, Shakti; Kihara, Yasuyuki; Maurya, Mano R; Norris, Paul C; Dennis, Edward A; Subramaniam, Shankar | The journal of physical chemistry. B. | 2016 Aug 25; | 27063350 | |
| Exogenous Fatty Acids Are the Preferred Source of Membrane Lipids in Proliferating Fibroblasts. | Yao, Cong-Hui; Fowle-Grider, Ronald; Mahieu, Nathanial G; Liu, Gao-Yuan; Chen, Ying-Jr; Wang, Rencheng; Singh, Manmilan; Potter, Gregory S; Gross, Richard W; Schaefer, Jacob; Johnson, Stephen L; Patti, Gary J | Cell chemical biology. | 2016 Apr 21; | 27049668 | |
| Metabolomics by Gas Chromatography-Mass Spectrometry: Combined Targeted and Untargeted Profiling. | Fiehn, Oliver | Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] | 27038389 | ||
| (1)H NMR Metabolomics Study of Spleen from C57BL/6 Mice Exposed to Gamma Radiation. | Xiao, X; Hu, M; Liu, M; Hu, J Z | Metabolomics : open access | 27019763 | ||
| Metabolomics Reveals New Mechanisms for Pathogenesis in Barth Syndrome and Introduces Novel Roles for Cardiolipin in Cellular Function. | Sandlers, Yana; Mercier, Kelly; Pathmasiri, Wimal; Carlson, Jim; McRitchie, Susan; Sumner, Susan; Vernon, Hilary J | PloS one. | 2016; | 27015085 | |
| Association of urinary metabolites with radiographic progression of knee osteoarthritis in overweight and obese adults: an exploratory study. | Loeser, R F; Pathmasiri, W; Sumner, S J; McRitchie, S; Beavers, D; Saxena, P; Nicklas, B J; Jordan, J; Guermazi, A; Hunter, D J; Messier, S P | Osteoarthritis and cartilage / OARS, Osteoarthritis Research Society | 2016 Mar 21 | 27012755 | |
| Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform. | Cong, Yongzheng; Katipamula, Shanta; Trader, Cameron D; Orton, Daniel J; Geng, Tao; Baker, Erin S; Kelly, Ryan T | Lab on a chip | 2016 Apr 26 | 27009517 | |
| Serum phosphatidylethanolamine levels distinguish benign from malignant solitary pulmonary nodules and represent a potential diagnostic biomarker for lung cancer. | Fahrmann, Johannes F; Grapov, Dmitry; DeFelice, Brian C; Taylor, Sandra; Kim, Kyoungmi; Kelly, Karen; Wikoff, William R; Pass, Harvey; Rom, William N; Fiehn, Oliver; Miyamoto, Suzanne | Cancer biomarkers : section A of Disease markers. | 2016 Mar 11; | 27002763 | |
| Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases. | Chen, Zhaohui; Kim, Jayoung | BMC urology | 27000794 | ||
| Gut microbiome-derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease. | Mathewson, Nathan D; Jenq, Robert; Mathew, Anna V; Koenigsknecht, Mark; Hanash, Alan; Toubai, Tomomi; Oravecz-Wilson, Katherine; Wu, Shin-Rong; Sun, Yaping; Rossi, Corinne; Fujiwara, Hideaki; Byun, Jaeman; Shono, Yusuke; Lindemans, Caroline; Calafiore, Marco; Schmidt, Thomas C; Honda, Kenya; Young, Vincent B; Pennathur, Subramaniam; van den Brink, Marcel; Reddy, Pavan | Nature immunology. | 2016 May; | 26998764 | |
| 1D-¹H-nuclear magnetic resonance metabolomics reveals age-related changes in metabolites associated with experimental venous thrombosis. | Obi, Andrea T; Stringer, Kathleen A; Diaz, Jose A; Finkel, Michael A; Farris, Diana M; Yeomans, Larisa; Wakefield, Thomas; Myers Jr, Daniel D | Journal of vascular surgery. Venous and lymphatic disorders. | 2016 Apr; | 26993871 | |
| Anti-Ulcer Efficacy of Soluble Epoxide Hydrolase Inhibitor TPPU on Diclofenac-Induced Intestinal Ulcers. | Goswami, Sumanta Kumar; Wan, Debin; Yang, Jun; Trindade da Silva, Carlos A; Morisseau, Christophe; Kodani, Sean D; Yang, Guang-Yu; Inceoglu, Bora; Hammock, Bruce D | The Journal of pharmacology and experimental therapeutics. | 2016 Jun; | 26989141 | |
| 18F-Choline PET/MRI: The Additional Value of PET for MRI-Guided Transrectal Prostate Biopsies. | Piert, Morand; Montgomery, Jeffrey; Kunju, Lakshmi Priya; Siddiqui, Javed; Rogers, Virginia; Rajendiran, Thekkelnaycke; Johnson, Timothy D; Shao, Xia; Davenport, Matthew S | Journal of nuclear medicine : official publication, Society of Nuclear Medicine. | 2016 Jul; | 26985061 | |
| Extraction, Enrichment, Solubilization, and Digestion Techniques for Membrane Proteomics. | Moore, Stephanie M; Hess, Stephanie M; Jorgenson, James W | Journal of proteome research. | 2016 Apr 1; | 26979493 | |
| Gene deficiency and pharmacological inhibition of soluble epoxide hydrolase confers resilience to repeated social defeat stress. | Ren, Qian; Ma, Min; Ishima, Tamaki; Morisseau, Christophe; Yang, Jun; Wagner, Karen M; Zhang, Ji-Chun; Yang, Chun; Yao, Wei; Dong, Chao; Han, Mei; Hammock, Bruce D; Hashimoto, Kenji | Proceedings of the National Academy of Sciences of the United States of America. | 2016 Mar 29; | 26976569 | |
| Impaired 17,20-Lyase Activity in Male Mice Lacking Cytochrome b5 in Leydig Cells. | Sondhi, Varun; Owen, Bryn M; Liu, Jiayan; Chomic, Robert; Kliewer, Steven A; Hughes, Beverly A; Arlt, Wiebke; Mangelsdorf, David J; Auchus, Richard J | Molecular endocrinology (Baltimore, Md.). | 2016 Apr; | 26974035 | |
| Applications of NMR spectroscopy to systems biochemistry. | Fan, Teresa W-M; Lane, Andrew N | Progress in nuclear magnetic resonance spectroscopy | 2016 Feb | 26952191 | |
| Contemporary views on the genetics of anorexia nervosa. | Shih, Pei-an Betty; Woodside, D Blake | European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. | 2016 Apr; | 26944296 | |
| Catalytic Activities of Tumor-Specific Human Cytochrome P450 CYP2W1 Toward Endogenous Substrates. | Zhao, Yan; Wan, Debin; Yang, Jun; Hammock, Bruce D; Ortiz de Montellano, Paul R | Drug metabolism and disposition: the biological fate of chemicals. | 2016 May; | 26936974 | |
| Short chain acyl-CoA dehydrogenase deficiency and short-term high-fat diet perturb mitochondrial energy metabolism and transcriptional control of lipid-handling in liver. | Ghosh, Sujoy; Kruger, Claudia; Wicks, Shawna; Simon, Jacob; Kumar, K Ganesh; Johnson, William D; Mynatt, Randall L; Noland, Robert C; Richards, Brenda K | Nutrition & metabolism. | 2016; | 26933443 | |
| Effect of Pramlintide on Postprandial Glucose Fluxes in Type 1 Diabetes. | Hinshaw, Ling; Schiavon, Michele; Dadlani, Vikash; Mallad, Ashwini; Dalla Man, Chiara; Bharucha, Adil; Basu, Rita; Geske, Jennifer R; Carter, Rickey E; Cobelli, Claudio; Basu, Ananda; Kudva, Yogish C | The Journal of clinical endocrinology and metabolism. | 2016 May; | 26930181 | |
| Emerging new strategies for successful metabolite identification in metabolomics. | Bingol, Kerem; Bruschweiler-Li, Lei; Li, Dawei; Zhang, Bo; Xie, Mouzhe; Brüschweiler, Rafael | Bioanalysis. | 2016 Mar; | 26915807 | |
| Unique plasma metabolomic signatures of individuals with inherited disorders of long-chain fatty acid oxidation. | McCoin, Colin S; Piccolo, Brian D; Knotts, Trina A; Matern, Dietrich; Vockley, Jerry; Gillingham, Melanie B; Adams, Sean H | Journal of inherited metabolic disease. | 2016 May; | 26907176 | |
| An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection. | Antharam, Vijay C; McEwen, Daniel C; Garrett, Timothy J; Dossey, Aaron T; Li, Eric C; Kozlov, Andrew N; Mesbah, Zhubene; Wang, Gary P | PloS one. | 2016; | 26871580 | |
| Risperidone-induced weight gain is mediated through shifts in the gut microbiome and suppression of energy expenditure. | Bahra, Sarah M; Weidemann, Benjamin J; Castro, Ana N; Walsh, John W; deLeon, Orlando; Burnett, Colin M L; Pearson, Nicole A; Murry, Daryl J; Grobe, Justin L; Kirby, John R | EBioMedicine. | 2015 Nov; | 26870798 | |
| Adrenal-derived 11-oxygenated 19-carbon steroids are the dominant androgens in classic 21-hydroxylase deficiency. | Turcu, Adina F; Nanba, Aya T; Chomic, Robert; Upadhyay, Sunil K; Giordano, Thomas J; Shields, James J; Merke, Deborah P; Rainey, William E; Auchus, Richard J | European journal of endocrinology / European Federation of Endocrine Societies. | 2016 May; | 26865584 | |
| White Matter Lipids as a Ketogenic Fuel Supply in Aging Female Brain: Implications for Alzheimer's Disease. | Klosinski, Lauren P; Yao, Jia; Yin, Fei; Fonteh, Alfred N; Harrington, Michael G; Christensen, Trace A; Trushina, Eugenia; Brinton, Roberta Diaz | EBioMedicine. | 2015 Dec; | 26844268 | |
| Microbial metabolomics in open microscale platforms. | Barkal, Layla J; Theberge, Ashleigh B; Guo, Chun-Jun; Spraker, Joe; Rappert, Lucas; Berthier, Jean; Brakke, Kenneth A; Wang, Clay C C; Beebe, David J; Keller, Nancy P; Berthier, Erwin | Nature communications. | 2016; | 26842393 | |
| Bar Coding MS(2) Spectra for Metabolite Identification. | Spalding, Jonathan L; Cho, Kevin; Mahieu, Nathaniel G; Nikolskiy, Igor; Llufrio, Elizabeth M; Johnson, Stephen L; Patti, Gary J | Analytical chemistry | 2016 Mar 1 | 26837423 | |
| Surprising impact of remote groups on the folding--unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. | Liu, Rui; Cheng, Shuang; Baker, Erin S; Smith, Richard D; Zeng, Xiao Cheng; Gong, Bing | Chemical communications (Cambridge, England). | 2016 Mar 7; | 26830456 | |
| Isotopic Ratio Outlier Analysis of the S. cerevisiae Metabolome Using Accurate Mass Gas Chromatography/Time-of-Flight Mass Spectrometry: A New Method for Discovery. | Qiu, Yunping; Moir, Robyn; Willis, Ian; Beecher, Chris; Tsai, Yu-Hsuan; Garrett, Timothy J; Yost, Richard A; Kurland, Irwin J | Analytical chemistry. | 2016 Mar 1; | 26820234 | |
| Lipotoxicity in steatohepatitis occurs despite an increase in tricarboxylic acid cycle activity. | Patterson, Rainey E; Kalavalapalli, Srilaxmi; Williams, Caroline M; Nautiyal, Manisha; Mathew, Justin T; Martinez, Janie; Reinhard, Mary K; McDougall, Danielle J; Rocca, James R; Yost, Richard A; Cusi, Kenneth; Garrett, Timothy J; Sunny, Nishanth E | American journal of physiology. Endocrinology and metabolism. | 2016 Apr 1; | 26814015 | |
| Impact of Long-Term Poor and Good Glycemic Control on Metabolomics Alterations in Type 1 Diabetic People. | Dutta, Tumpa; Kudva, Yogish C; Persson, Xuan-Mai T; Schenck, Louis A; Ford, G Charles; Singh, Ravinder J; Carter, Rickey; Nair, K Sreekumaran | The Journal of clinical endocrinology and metabolism | 2016 Mar | 26796761 | |
| Metabolic Profiling of Right Ventricular-Pulmonary Vascular Function Reveals Circulating Biomarkers of Pulmonary Hypertension. | Lewis, Gregory D; Ngo, Debby; Hemnes, Anna R; Farrell, Laurie; Domos, Carly; Pappagianopoulos, Paul P; Dhakal, Bishnu P; Souza, Amanda; Shi, Xu; Pugh, Meredith E; Beloiartsev, Arkadi; Sinha, Sumita; Clish, Clary B; Gerszten, Robert E | Journal of the American College of Cardiology. | 2016 Jan 19; | 26791065 | |
| Direct Evidence of Acetaminophen Interference with Subcutaneous Glucose Sensing in Humans: A Pilot Study. | Basu, Ananda; Veettil, Sona; Dyer, Roy; Peyser, Thomas; Basu, Rita | Diabetes technology & therapeutics. | 2016 Feb; | 26784129 | |
| Metabolomic Profiling of Arginine Metabolome Links Altered Methylation to Chronic Kidney Disease Accelerated Atherosclerosis. | Mathew, Anna V; Zeng, Lixia; Byun, Jaeman; Pennathur, Subramaniam | Journal of proteomics & bioinformatics. | 2015 Oct; | 26778898 | |
| Targeted Lipidomic and Transcriptomic Analysis Identifies Dysregulated Renal Ceramide Metabolism in a Mouse Model of Diabetic Kidney Disease. | Sas, Kelli M; Nair, Viji; Byun, Jaeman; Kayampilly, Pradeep; Zhang, Hongyu; Saha, Jharna; Brosius 3rd, Frank C; Kretzler, Matthias; Pennathur, Subramaniam | Journal of proteomics & bioinformatics. | 2015 Oct; | 26778897 | |
| Dicer1 mediated miRNA processing shapes the mRNA profile and function of murine platelets. | Rowley, Jesse W; Chappaz, Stéphane; Corduan, Aurélie; Chong, Mark M W; Campbell, Robert; Khoury, Amanda; Manne, Bhanu Kanth; Wurtzel, Jeremy G T; Michael, James V; Goldfinger, Lawrence E; Mumaw, Michele M; Nieman, Marvin T; Kile, Benjamin T; Provost, Patrick; Weyrich, Andrew S | Blood. | 2016 Jan 14; | 26773046 | |
| Effect of fish oil on monoepoxides derived from fatty acids during cardiac surgery. | Akintoye, Emmanuel; Wu, Jason H Y; Hou, Tao; Song, Xiaoling; Yang, Jun; Hammock, Bruce; Mozaffarian, Dariush | Journal of lipid research. | 2016 Mar; | 26749073 | |
| Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry. | Kyle, Jennifer E; Zhang, Xing; Weitz, Karl K; Monroe, Matthew E; Ibrahim, Yehia M; Moore, Ronald J; Cha, Jeeyeon; Sun, Xiaofei; Lovelace, Erica S; Wagoner, Jessica; Polyak, Stephen J; Metz, Thomas O; Dey, Sudhansu K; Smith, Richard D; Burnum-Johnson, Kristin E; Baker, Erin S | The Analyst | 2016 Feb 15 | 26734689 | |
| SDHB-Deficient Cancers: The Role of Mutations That Impair Iron Sulfur Cluster Delivery. | Saxena, Neetu; Maio, Nunziata; Crooks, Daniel R; Ricketts, Christopher J; Yang, Youfeng; Wei, Ming-Hui; Fan, Teresa W-M; Lane, Andrew N; Sourbier, Carole; Singh, Anamika; Killian, J Keith; Meltzer, Paul S; Vocke, Cathy D; Rouault, Tracey A; Linehan, W Marston | Journal of the National Cancer Institute. | 2016 Jan; | 26719882 | |
| Altered Skeletal Muscle Mitochondrial Proteome As the Basis of Disruption of Mitochondrial Function in Diabetic Mice. | Zabielski, Piotr; Lanza, Ian R; Gopala, Srinivas; Holtz Heppelmann, Carrie J; Bergen 3rd, H Robert; Dasari, Surendra; Nair, K Sreekumaran | Diabetes | 2016 Mar | 26718503 | |
| Predictors of Whole-Body Insulin Sensitivity Across Ages and Adiposity in Adult Humans. | Lalia, Antigoni Z; Dasari, Surendra; Johnson, Matthew L; Robinson, Matthew M; Konopka, Adam R; Distelmaier, Klaus; Port, John D; Glavin, Maria T; Esponda, Raul Ruiz; Nair, K Sreekumaran; Lanza, Ian R | The Journal of clinical endocrinology and metabolism | 2016 Feb | 26709968 | |
| Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS. | Ma, Yan; Tanaka, Nobuo; Vaniya, Arpana; Kind, Tobias; Fiehn, Oliver | Journal of agricultural and food chemistry | 2016 Jan 20 | 26698107 | |
| Antioxidant Drug Tempol Promotes Functional Metabolic Changes in the Gut Microbiota. | Cai, Jingwei; Zhang, Limin; Jones, Richard A; Correll, Jared B; Hatzakis, Emmanuel; Smith, Philip B; Gonzalez, Frank J; Patterson, Andrew D | Journal of proteome research | 2016 Feb 5 | 26696396 | |
| (13)C Tracer Studies of Metabolism in Mouse Tumor Xenografts. | Lane, Andrew N; Yan, Jun; Fan, Teresa W-M | Bio-protocol. | 2015 Nov 20; | 26693168 | |
| A roadmap for the XCMS family of software solutions in metabolomics. | Mahieu, Nathaniel G; Genenbacher, Jessica Lloyd; Patti, Gary J | Current opinion in chemical biology. | 2016 Feb; | 87-93 | 26673825 |
| Intestine-selective farnesoid X receptor inhibition improves obesity-related metabolic dysfunction. | Jiang, Changtao; Xie, Cen; Lv, Ying; Li, Jing; Krausz, Kristopher W; Shi, Jingmin; Brocker, Chad N; Desai, Dhimant; Amin, Shantu G; Bisson, William H; Liu, Yulan; Gavrilova, Oksana; Patterson, Andrew D; Gonzalez, Frank J | Nature communications | 26670557 | ||
| PPAR-pan activation induces hepatic oxidative stress and lipidomic remodelling. | Ament, Zsuzsanna; West, James A; Stanley, Elizabeth; Ashmore, Tom; Roberts, Lee D; Wright, Jayne; Nicholls, Andrew W; Griffin, Julian L | Free radical biology & medicine. | 2016 Jun; | 26654758 | |
| Toward Merging Untargeted and Targeted Methods in Mass Spectrometry-Based Metabolomics and Lipidomics. | Cajka, Tomas; Fiehn, Oliver | Analytical chemistry | 2016 Jan 5 | 26637011 | |
| Chronic Zinc Deficiency Alters Chick Gut Microbiota Composition and Function. | Reed, Spenser; Neuman, Hadar; Moscovich, Sharon; Glahn, Raymond P; Koren, Omry; Tako, Elad | Nutrients. | 2015 Dec; | 26633470 | |
| Evidence that 2-hydroxyglutarate is not readily metabolized in colorectal carcinoma cells. | Gelman, Susan J; Mahieu, Nathaniel G; Cho, Kevin; Llufrio, Elizabeth M; Wencewicz, Timothy A; Patti, Gary J | Cancer & metabolism. | 2015; | 26629338 | |
| Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. | Quinn, Robert A; Phelan, Vanessa V; Whiteson, Katrine L; Garg, Neha; Bailey, Barbara A; Lim, Yan Wei; Conrad, Douglas J; Dorrestein, Pieter C; Rohwer, Forest L | The ISME journal. | 2016 Jun; | 26623545 | |
| Hepatocytes release ceramide-enriched pro-inflammatory extracellular vesicles in an IRE1?-dependent manner. | Kakazu, Eiji; Mauer, Amy S; Yin, Meng; Malhi, Harmeet | Journal of lipid research | 2016 Feb | 26621917 | |
| Insulin:Carbohydrate Ratio--Part of the Story. | Basu, Ananda; Basu, Rita | Diabetes technology & therapeutics. | 2015 Dec; | 26618719 | |
| Virus encoded circulatory miRNAs for early detection of prostate cancer. | Kim, Jayoung; Yun, Seok Joong; Kim, Wun-Jae | BMC urology. | 2015; | 116 | 26612689 |
| Metabolite Signatures in Hydrophilic Extracts of Mouse Lungs Exposed to Cigarette Smoke Revealed by (1)H NMR Metabolomics Investigation. | Jz, Hu; X, Wang; J, Feng; Bj, Robertson; Km, Waters; Sc, Tilton; Jg, Pounds; Ra, Corley; M, Liu; M, Hu | Metabolomics : open access. | 2015 Jun; | 26609465 | |
| Nanoparticle-Assisted Removal of Protein in Human Serum for Metabolomics Studies. | Zhang, Bo; Xie, Mouzhe; Bruschweiler-Li, Lei; Br�schweiler, Rafael | Analytical chemistry | 2016 Jan 5 | 26605638 | |
| Quantitative H2S-mediated protein sulfhydration reveals metabolic reprogramming during the integrated stress response. | Gao, Xing-Huang; Krokowski, Dawid; Guan, Bo-Jhih; Bederman, Ilya; Majumder, Mithu; Parisien, Marc; Diatchenko, Luda; Kabil, Omer; Willard, Belinda; Banerjee, Ruma; Wang, Benlian; Bebek, Gurkan; Evans, Charles R; Fox, Paul L; Gerson, Stanton L; Hoppel, Charles L; Liu, Ming; Arvan, Peter; Hatzoglou, Maria | eLife. | 2015; | 26595448 | |
| Dose-Dependent Response of Personal Glucose Meters to Nicotinamide Coenzymes: Applications to Point-of-Care Diagnostics of Many Non-Glucose Targets in a Single Step. | Zhang, Jingjing; Xiang, Yu; Wang, Miao; Basu, Ananda; Lu, Yi | Angewandte Chemie (International ed. in English). | 2016 Jan 11; | 26593219 | |
| A Diet-Sensitive BAF60a-Mediated Pathway Links Hepatic Bile Acid Metabolism to Cholesterol Absorption and Atherosclerosis. | Meng, Zhuo-Xian; Wang, Lin; Chang, Lin; Sun, Jingxia; Bao, Jiangyin; Li, Yaqiang; Chen, Y Eugene; Lin, Jiandie D | Cell reports. | 2015 Nov 24; | 26586440 | |
| Ion Mobility in Clinical Analysis: Current Progress and Future Perspectives. | Chouinard, Christopher D; Wei, Michael S; Beekman, Christopher R; Kemperman, Robin H J; Yost, Richard A | Clinical chemistry | 2016 Jan | 26585928 | |
| An in silico MS/MS library for automatic annotation of novel FAHFA lipids. | Ma, Yan; Kind, Tobias; Vaniya, Arpana; Gennity, Ingrid; Fahrmann, Johannes F; Fiehn, Oliver | Journal of cheminformatics. | 2015; | 26579213 | |
| Oxidative Modifications of Protein Tyrosyl Residues Are Increased in Plasma of Human Subjects with Interstitial Lung Disease. | Pennathur, Subramaniam; Vivekanandan-Giri, Anuradha; Locy, Morgan L; Kulkarni, Tejaswini; Zhi, Degui; Zeng, Lixia; Byun, Jaeman; de Andrade, Joao A; Thannickal, Victor J | American journal of respiratory and critical care medicine. | 2016 Apr 15; | 26575972 | |
| The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition. | Sperber, Henrik; Mathieu, Julie; Wang, Yuliang; Ferreccio, Amy; Hesson, Jennifer; Xu, Zhuojin; Fischer, Karin A; Devi, Arikketh; Detraux, Damien; Gu, Haiwei; Battle, Stephanie L; Showalter, Megan; Valensisi, Cristina; Bielas, Jason H; Ericson, Nolan G; Margaretha, Lilyana; Robitaille, Aaron M; Margineantu, Daciana; Fiehn, Oliver; Hockenbery, David; Blau, C Anthony; Raftery, Daniel; Margolin, Adam A; Hawkins, R David; Moon, Randall T; Ware, Carol B; Ruohola-Baker, Hannele | Nature cell biology | 2015 Dec | 26571212 | |
| Altered fecal short chain fatty acid composition in children with a history of Hirschsprung-associated enterocolitis. | Demehri, Farokh R; Frykman, Philip K; Cheng, Zhi; Ruan, Chunhai; Wester, Tomas; Nordenskj�ld, Agneta; Kawaguchi, Akemi; Hui, Thomas T; Granstr�m, Anna L; Funari, Vince; Teitelbaum, Daniel H; HAEC Collaborative Research Group | Journal of pediatric surgery | 2016 Jan | 26561246 | |
| Organization of the Mammalian Ionome According to Organ Origin, Lineage Specialization, and Longevity. | Ma, Siming; Lee, Sang-Goo; Kim, Eun Bae; Park, Thomas J; Seluanov, Andrei; Gorbunova, Vera; Buffenstein, Rochelle; Seravalli, Javier; Gladyshev, Vadim N | Cell reports. | 2015 Nov 17; | 1319-26 | 26549444 |
| Microbiota-Dependent Hepatic Lipogenesis Mediated by Stearoyl CoA Desaturase 1 (SCD1) Promotes Metabolic Syndrome in TLR5-Deficient Mice. | Singh, Vishal; Chassaing, Benoit; Zhang, Limin; San Yeoh, Beng; Xiao, Xia; Kumar, Manish; Baker, Mark T; Cai, Jingwei; Walker, Rachel; Borkowski, Kamil; Harvatine, Kevin J; Singh, Nagendra; Shearer, Gregory C; Ntambi, James M; Joe, Bina; Patterson, Andrew D; Gewirtz, Andrew T; Vijay-Kumar, Matam | Cell metabolism | 2015 Dec 1 | 26525535 | |
| Altered Metabolic Profile With Sodium-Restricted Dietary Approaches to Stop Hypertension Diet in Hypertensive Heart Failure With Preserved Ejection Fraction. | Mathew, Anna V; Seymour, E Mitchell; Byun, Jaeman; Pennathur, Subramaniam; Hummel, Scott L | Journal of cardiac failure | 2015 Dec | 26497755 | |
| Interactions Between the Gastrointestinal Microbiome and Clostridium difficile. | Theriot, Casey M; Young, Vincent B | Annual review of microbiology. | 2015; | 445-61 | 26488281 |
| Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. | Sud M1, Fahy E1, Cotter D1, Azam K1, Vadivelu I1, Burant C2, Edison A3, Fiehn O4, Higashi R5, Nair KS6, Sumner S7, Subramaniam S8. | Nucleic Acids Research | 2015 Oct 13 | 26467476 | |
| Dectin-1 Activation by a Natural Product ?-Glucan Converts Immunosuppressive Macrophages into an M1-like Phenotype. | Liu, Min; Luo, Fengling; Ding, Chuanlin; Albeituni, Sabrin; Hu, Xiaoling; Ma, Yunfeng; Cai, Yihua; McNally, Lacey; Sanders, Mary Ann; Jain, Dharamvir; Kloecker, Goetz; Bousamra 2nd, Michael; Zhang, Huang-ge; Higashi, Richard M; Lane, Andrew N; Fan, Teresa W-M; Yan, Jun | Journal of immunology (Baltimore, Md. : 1950) | 2015 Nov 15 | 26453753 | |
| The balance of powers: Redox regulation of fibrogenic pathways in kidney injury. | Okamura, Daryl M; Pennathur, Subramaniam | Redox biology. | 2015 Dec; | 495-504 | 26448394 |
| Use of the second-generation antipsychotic, risperidone, and secondary weight gain are associated with an altered gut microbiota in children. | Bahr, S M; Tyler, B C; Wooldridge, N; Butcher, B D; Burns, T L; Teesch, L M; Oltman, C L; Azcarate-Peril, M A; Kirby, J R; Calarge, C A | Translational psychiatry. | 2015; | 26440540 | |
| AMPK Protects Leukemia-Initiating Cells in Myeloid Leukemias from Metabolic Stress in the Bone Marrow. | Saito, Yusuke; Chapple, Richard H; Lin, Angelique; Kitano, Ayumi; Nakada, Daisuke | Cell stem cell. | 2015 Nov 5; | 585-96 | 26440282 |
| Warpgroup: increased precision of metabolomic data processing by consensus integration bound analysis. | Mahieu, Nathaniel G; Spalding, Jonathan L; Patti, Gary J | Bioinformatics (Oxford, England) | 2016 Jan 15 | 26424859 | |
| Adenylosuccinate Is an Insulin Secretagogue Derived from Glucose-Induced Purine Metabolism. | Gooding, Jessica R; Jensen, Mette V; Dai, Xiaoqing; Wenner, Brett R; Lu, Danhong; Arumugam, Ramamani; Ferdaoussi, Mourad; MacDonald, Patrick E; Newgard, Christopher B | Cell reports. | 2015 Oct 6; | 157-67 | 26411681 |
| Liquid Chromatography-Mass Spectrometry Metabolic and Lipidomic Sample Preparation Workflow for Suspension-Cultured Mammalian Cells using Jurkat T lymphocyte Cells. | Ulmer, Candice Z; Yost, Richard A; Chen, Jing; Mathews, Clayton E; Garrett, Timothy J | Journal of proteomics & bioinformatics. | 2015 Jun; | 126-132 | 26401069 |
| Genomic, Proteomic, and Metabolomic Data Integration Strategies. | Wanichthanarak, Kwanjeera; Fahrmann, Johannes F; Grapov, Dmitry | Biomarker insights. | 2015; | 26396492 | |
| Potential serum biomarkers from a metabolomics study of autism. | Wang, Han; Liang, Shuang; Wang, Maoqing; Gao, Jingquan; Sun, Caihong; Wang, Jia; Xia, Wei; Wu, Shiying; Sumner, Susan J; Zhang, Fengyu; Sun, Changhao; Wu, Lijie | Journal of psychiatry & neuroscience : JPN. | 2016 Jan; | 26395811 | |
| The ubiquitin ligase Siah2 regulates obesity-induced adipose tissue inflammation. | Kilroy, Gail; Carter, Lauren E; Newman, Susan; Burk, David H; Manuel, Justin; Möller, Andreas; Bowtell, David D; Mynatt, Randall L; Ghosh, Sujoy; Floyd, Z Elizabeth | Obesity (Silver Spring, Md.). | 2015 Sep 18; | 26380945 | |
| An overview of methods using (13)C for improved compound identification in metabolomics and natural products. | Clendinen, Chaevien S; Stupp, Gregory S; Ajredini, Ramadan; Lee-McMullen, Brittany; Beecher, Chris; Edison, Arthur S | Frontiers in plant science. | 2015; | 26379677 | |
| Decline of Phosphotransfer and Substrate Supply Metabolic Circuits Hinders ATP Cycling in Aging Myocardium. | Nemutlu, Emirhan; Gupta, Anu; Zhang, Song; Viqar, Maria; Holmuhamedov, Ekhson; Terzic, Andre; Jahangir, Arshad; Dzeja, Petras | PloS one. | 2015; | e0136556 | 26378442 |
| Methylseleninic acid promotes antitumour effects via nuclear FOXO3a translocation through Akt inhibition. | Tarrado-Castellarnau, Míriam; Cortés, Roldán; Zanuy, Miriam; Tarragó-Celada, Josep; Polat, Ibrahim H; Hill, Richard; Fan, Teresa W M; Link, Wolfgang; Cascante, Marta | Pharmacological research. | 2015 Dec; | 26375988 | |
| Perhexiline activates KLF14 and reduces atherosclerosis by modulating ApoA-I production. | Guo, Yanhong; Fan, Yanbo; Zhang, Jifeng; Lomberk, Gwen A; Zhou, Zhou; Sun, Lijie; Mathison, Angela J; Garcia-Barrio, Minerva T; Zhang, Ji; Zeng, Lixia; Li, Lei; Pennathur, Subramaniam; Willer, Cristen J; Rader, Daniel J; Urrutia, Raul; Chen, Y Eugene | The Journal of clinical investigation. | 2015 Oct 1; | 3819-30 | 26368306 |
| Vitamin D in Tear Fluid. | Lu, Xiaowen; Elizondo, Rodolfo A; Nielsen, Rikke; Christensen, Erik I; Yang, Jun; Hammock, Bruce D; Watsky, Mitchell A | Investigative ophthalmology & visual science. | 2015 Sep; | 5880-7 | 26348637 |
| Comparison of blood plasma sample preparation methods for combined LC-MS lipidomics and metabolomics. | Patterson, Rainey E; Ducrocq, Antoine J; McDougall, Danielle J; Garrett, Timothy J; Yost, Richard A | Journal of chromatography. B, Analytical technologies in the biomedical and life sciences. | 2015 Oct 1; | 260-6 | 26343017 |
| Mechanism by Which Caloric Restriction Improves Insulin Sensitivity in Sedentary Obese Adults. | Johnson, Matthew L; Distelmaier, Klaus; Lanza, Ian R; Irving, Brian A; Robinson, Matthew M; Konopka, Adam R; Shulman, Gerald I; Nair, K Sreekumaran | Diabetes. | 2016 Jan; | 74-84 | 26324180 |
| Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue. | Ruhaak, L Renee; Taylor, Sandra L; Stroble, Carol; Nguyen, Uyen Thao; Parker, Evan A; Song, Ting; Lebrilla, Carlito B; Rom, William N; Pass, Harvey; Kim, Kyoungmi; Kelly, Karen; Miyamoto, Suzanne | Journal of proteome research. | 2015 Nov 6; | 4538-49 | 26322380 |
| Modeling Plasma-to-Interstitium Glucose Kinetics from Multitracer Plasma and Microdialysis Data. | Schiavon, Michele; Dalla Man, Chiara; Dube, Simmi; Slama, Michael; Kudva, Yogish C; Peyser, Thomas; Basu, Ananda; Basu, Rita; Cobelli, Claudio | Diabetes technology & therapeutics. | 2015 Nov; | 26313215 | |
| Glucocorticoid Excess Increases Hepatic 11?-HSD-1 Activity in Humans: Implications in Steroid-Induced Diabetes. | Dube, Simmi; Slama, Michael Q; Basu, Ananda; Rizza, Robert A; Basu, Rita | The Journal of clinical endocrinology and metabolism. | 2015 Nov; | 26308294 | |
| Mitochondrial Aging and Physical Decline: Insights From Three Generations of Women. | Hebert, Sadie L; Marquet-de Rougé, Perrine; Lanza, Ian R; McCrady-Spitzer, Shelly K; Levine, James A; Middha, Sumit; Carter, Rickey E; Klaus, Katherine A; Therneau, Terry M; Highsmith, Edward W; Nair, K Sreekumaran | The journals of gerontology. Series A, Biological sciences and medical sciences. | 2015 Nov; | 1409-17 | 26297939 |
| Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods. | Abate-Pella, Daniel; Freund, Dana M; Ma, Yan; Simón-Manso, Yamil; Hollender, Juliane; Broeckling, Corey D; Huhman, David V; Krokhin, Oleg V; Stoll, Dwight R; Hegeman, Adrian D; Kind, Tobias; Fiehn, Oliver; Schymanski, Emma L; Prenni, Jessica E; Sumner, Lloyd W; Boswell, Paul G | Journal of chromatography. A. | 2015 Sep 18; | 43-51 | 26292625 |
| Elevated baseline serum glutamate as a pharmacometabolomic biomarker for acamprosate treatment outcome in alcohol-dependent subjects. | Nam, H W; Karpyak, V M; Hinton, D J; Geske, J R; Ho, A M C; Prieto, M L; Biernacka, J M; Frye, M A; Weinshilboum, R M; Choi, D-S | Translational psychiatry. | 2015; | 26285131 | |
| Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences. | Todor, Horia; Gooding, Jessica; Ilkayeva, Olga R; Schmid, Amy K | PloS one. | 2015; | e0135693 | 26284786 |
| Diacetylspermine Is a Novel Prediagnostic Serum Biomarker for Non-Small-Cell Lung Cancer and Has Additive Performance With Pro-Surfactant Protein B. | Wikoff, William R; Hanash, Samir; DeFelice, Brian; Miyamoto, Suzanne; Barnett, Matt; Zhao, Yang; Goodman, Gary; Feng, Ziding; Gandara, David; Fiehn, Oliver; Taguchi, Ayumu | Journal of clinical oncology : official journal of the American Society of Clinical Oncology. | 2015 Nov 20; | 3880-6 | 26282655 |
| Investigation of metabolomic blood biomarkers for detection of adenocarcinoma lung cancer. | Fahrmann, Johannes F; Kim, Kyoungmi; DeFelice, Brian C; Taylor, Sandra L; Gandara, David R; Yoneda, Ken Y; Cooke, David T; Fiehn, Oliver; Kelly, Karen; Miyamoto, Suzanne | Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. | 2015 Nov; | 1716-23 | 26282632 |
| Profiling the metabolome changes caused by cranberry procyanidins in plasma of female rats using (1) H NMR and UHPLC-Q-Orbitrap-HRMS global metabolomics approaches. | Liu, Haiyan; Garrett, Timothy J; Tayyari, Fariba; Gu, Liwei | Molecular nutrition & food research. | 2015 Nov; | 2107-18 | 26264887 |
| Assess the expression of ubiquitin specific protease USP2a for bladder cancer diagnosis. | Jeong, Pildu; Ha, Yun-Sok; Yun, Seok-Joong; Yoon, Hyung Yoon; Freeman, Michael R; Kim, Jayoung; Kim, Wun-Jae | BMC urology. | 2015 Aug 7; | 80 | 26250800 |
| Metastatic Melanoma Induced Metabolic Changes in C57BL/6J Mouse Stomach Measured by 1H NMR Spectroscopy. | Wang, X; Hu, M; Liu, M; Hu, J Z | Metabolomics : open access. | 2014; | 26246958 | |
| Organization of the Mammalian Metabolome according to Organ Function, Lineage Specialization, and Longevity. | Ma, Siming; Yim, Sun Hee; Lee, Sang-Goo; Kim, Eun Bae; Lee, Sang-Rae; Chang, Kyu-Tae; Buffenstein, Rochelle; Lewis, Kaitlyn N; Park, Thomas J; Miller, Richard A; Clish, Clary B; Gladyshev, Vadim N | Cell metabolism. | 2015 Aug 4; | 332-43 | 26244935 |
| A new method to measure muscle protein synthesis in humans by endogenously introduced d9-leucine and using blood for precursor enrichment determination. | Tran, Lee; Masters, Haley; Roust, Lori R; Katsanos, Christos S | Physiological reports. | 2015 Aug; | 26243214 | |
| Plasma linoleic acid partially mediates the association of bipolar disorder on self-reported mental health scales. | Evans, Simon J; Assari, Shervin; Harrington, Gloria J; Chang, Ya-Wen; Burant, Charles F; McInnis, Melvin G | Journal of psychiatric research. | 2015 Sep; | 61-7 | 26228402 |
| The c-MET Network as Novel Prognostic Marker for Predicting Bladder Cancer Patients with an Increased Risk of Developing Aggressive Disease. | Kim, Young-Won; Yun, Seok Joong; Jeong, Phildu; Kim, Seon-Kyu; Kim, Seon-Young; Yan, Chunri; Seo, Sung Phil; Lee, Sang Keun; Kim, Jayoung; Kim, Wun-Jae | PloS one. | 2015 Jul 30; | e0134552 | 26225770 |
| Left-Biased Spermatogenic Failure in 129/SvJ Dnd1Ter/+ Mice Correlates with Differences in Vascular Architecture, Oxygen Availability, and Metabolites. | Bustamante-Marin, Ximena M; Cook, Matthew S; Gooding, Jessica; Newgard, Christopher; Capel, Blanche | Biology of reproduction. | 2015 Sep; | 26224005 | |
| Inflammatory regulation of steroid sulfatase: A novel mechanism to control estrogen homeostasis and inflammation in chronic liver disease. | Jiang, Mengxi; Klein, Marcus; Zanger, Ulrich M; Mohammad, Mohammad K; Cave, Matthew C; Gaikwad, Nilesh W; Dias, Natasha J; Selcer, Kyle W; Guo, Yan; He, Jinhan; Zhang, Xiuhui; Shen, Qiujin; Qin, Wenxin; Li, Jiang; Li, Song; Xie, Wen | Journal of hepatology. | 2016 Jan; | 26220752 | |
| Dietary DHA reduces downstream endocannabinoid and inflammatory gene expression and epididymal fat mass while improving aspects of glucose use in muscle in C57BL/6J mice. | Kim, J; Carlson, M E; Kuchel, G A; Newman, J W; Watkins, B A | International journal of obesity (2005) | 2016 Jan | 26219414 | |
| Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics. | Vaniya, Arpana; Fiehn, Oliver | Trends in analytical chemistry : TRAC. | 2015 Jun 1; | 52-61 | 26213431 |
| Adjustment of Open-Loop Settings to Improve Closed-Loop Results in Type 1 Diabetes: A Multicenter Randomized Trial. | Dassau, Eyal; Brown, Sue A; Basu, Ananda; Pinsker, Jordan E; Kudva, Yogish C; Gondhalekar, Ravi; Patek, Steve; Lv, Dayu; Schiavon, Michele; Lee, Joon Bok; Dalla Man, Chiara; Hinshaw, Ling; Castorino, Kristin; Mallad, Ashwini; Dadlani, Vikash; McCrady-Spitzer, Shelly K; McElwee-Malloy, Molly; Wakeman, Christian A; Bevier, Wendy C; Bradley, Paige K; Kovatchev, Boris; Cobelli, Claudio; Zisser, Howard C; Doyle 3rd, Francis J | The Journal of clinical endocrinology and metabolism. | 2015 Oct; | 26204135 | |
| Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization. | Mariotti, Marco; Santesmasses, Didac; Capella-Gutierrez, Salvador; Mateo, Andrea; Arnan, Carme; Johnson, Rory; D'Aniello, Salvatore; Yim, Sun Hee; Gladyshev, Vadim N; Serras, Florenci; Corominas, Montserrat; Gabaldón, Toni; Guigó, Roderic | Genome research. | 2015 Sep; | 26194102 | |
| Temporal metabolomic responses of cultured HepG2 liver cells to high fructose and high glucose exposures. | Meissen, John K; Hirahatake, Kristin M; Adams, Sean H; Fiehn, Oliver | Metabolomics : Official journal of the Metabolomic Society. | 2015 Jun 1; | 707-721 | 26190955 |
| Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer. | Ibrahim, Yehia M; Baker, Erin S; Danielson 3rd, William F; Norheim, Randolph V; Prior, David C; Anderson, Gordon A; Belov, Mikhail E; Smith, Richard D | International journal of mass spectrometry. | 2015 Feb 1; | 655-662 | 26185483 |
| Sealed rotors for in situ high temperature high pressure MAS NMR. | Hu, Jian Zhi; Hu, Mary Y; Zhao, Zhenchao; Xu, Suochang; Vjunov, Aleksei; Shi, Hui; Camaioni, Donald M; Peden, Charles H F; Lercher, Johannes A | Chemical communications (Cambridge, England). | 2015 Aug 18; | 13458-61 | 26171928 |
| Fecal Microbiota Transplantation Eliminates Clostridium difficile in a Murine Model of Relapsing Disease. | Seekatz, Anna M; Theriot, Casey M; Molloy, Caitlyn T; Wozniak, Katherine L; Bergin, Ingrid L; Young, Vincent B | Infection and immunity | 2015 Oct | 26169276 | |
| Metabolomics and transcriptomics identify pathway differences between visceral and subcutaneous adipose tissue in colorectal cancer patients: the ColoCare study. | Liesenfeld, David B; Grapov, Dmitry; Fahrmann, Johannes F; Salou, Mariam; Scherer, Dominique; Toth, Reka; Habermann, Nina; Böhm, Jürgen; Schrotz-King, Petra; Gigic, Biljana; Schneider, Martin; Ulrich, Alexis; Herpel, Esther; Schirmacher, Peter; Fiehn, Oliver; Lampe, Johanna W; Ulrich, Cornelia M | The American journal of clinical nutrition. | 2015 Aug; | 433-43 | 26156741 |
| Validation of a Metallomics Analysis of Placenta Tissue by Inductively-Coupled Plasma Mass Spectrometry. | Harrington, James M; Young, Daniel J; Fry, Rebecca C; Weber, Frank X; Sumner, Susan S; Levine, Keith E | Biological trace element research. | 2016 Feb; | 26155965 | |
| Two elephants in the room: new hybrid nuclear magnetic resonance and mass spectrometry approaches for metabolomics. | Bingol, Kerem; Brüschweiler, Rafael | Current opinion in clinical nutrition and metabolic care. | 2015 Sep; | 471-7 | 26154280 |
| Carnitine Acetyltransferase Mitigates Metabolic Inertia and Muscle Fatigue during Exercise. | Seiler, Sarah E; Koves, Timothy R; Gooding, Jessica R; Wong, Kari E; Stevens, Robert D; Ilkayeva, Olga R; Wittmann, April H; DeBalsi, Karen L; Davies, Michael N; Lindeboom, Lucas; Schrauwen, Patrick; Schrauwen-Hinderling, Vera B; Muoio, Deborah M | Cell metabolism | 2015 Jul 7 | 26154055 | |
| Glucagon sensitivity and clearance in type 1 diabetes: insights from in vivo and in silico experiments. | Hinshaw, Ling; Mallad, Ashwini; Dalla Man, Chiara; Basu, Rita; Cobelli, Claudio; Carter, Rickey E; Kudva, Yogish C; Basu, Ananda | American journal of physiology. Endocrinology and metabolism. | 2015 Sep 1; | 26152766 | |
| Gene expression changes in subcutaneous adipose tissue due to Cushing's disease. | Hochberg, Irit; Harvey, Innocence; Tran, Quynh T; Stephenson, Erin J; Barkan, Ariel L; Saltiel, Alan R; Chandler, William F; Bridges, Dave | Journal of molecular endocrinology. | 2015 Oct; | 81-94 | 26150553 |
| Metabolomics and Natural-Products Strategies to Study Chemical Ecology in Nematodes. | Edison, Arthur S; Clendinen, Chaevien S; Ajredini, Ramadan; Beecher, Chris; Ponce, Francesca V; Stupp, Gregory S | Integrative and comparative biology. | 2015 Sep; | 478-85 | 26141866 |
| Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (?FAIMS/IMS-MS) separations. | Zhang, Xing; Ibrahim, Yehia M; Chen, Tsung-Chi; Kyle, Jennifer E; Norheim, Randolph V; Monroe, Matthew E; Smith, Richard D; Baker, Erin S | The Analyst. | 2015 Sep 28; | 6955-63 | 26140287 |
| Technology Use for Problem Solving in Adolescent Type 1 Diabetes. | Hinshaw, Ling; Basu, Ananda | Diabetes technology & therapeutics. | 2015 Jul; | 26132765 | |
| Nocturnal Glucose Metabolism in Type 1 Diabetes: A Study Comparing Single Versus Dual Tracer Approaches. | Mallad, Ashwini; Hinshaw, Ling; Dalla Man, Chiara; Cobelli, Claudio; Basu, Rita; Lingineni, Ravi; Carter, Rickey E; Kudva, Yogish C; Basu, Ananda | Diabetes technology & therapeutics. | 2015 Aug; | 587-95 | 26121060 |
| Metabolomics applied to the pancreatic islet. | Gooding, Jessica R; Jensen, Mette V; Newgard, Christopher B | Archives of biochemistry and biophysics. | 2015 Jun 25; | 26116790 | |
| Flux analysis of cholesterol biosynthesis in vivo reveals multiple tissue and cell-type specific pathways. | Mitsche, Matthew A; McDonald, Jeffrey G; Hobbs, Helen H; Cohen, Jonathan C | eLife. | 2015 Jun 26; | e07999 | 26114596 |
| Metabolomics Analysis Reveals that AICAR Affects Glycerolipid, Ceramide and Nucleotide Synthesis Pathways in INS-1 Cells. | ElAzzouny, Mahmoud A; Evans, Charles R; Burant, Charles F; Kennedy, Robert T | PloS one. | 2015; | 26107620 | |
| Steroid receptor coactivators 1 and 2 mediate fetal-to-maternal signaling that initiates parturition. | Gao, Lu; Rabbitt, Elizabeth H; Condon, Jennifer C; Renthal, Nora E; Johnston, John M; Mitsche, Matthew A; Chambon, Pierre; Xu, Jianming; O'Malley, Bert W; Mendelson, Carole R | The Journal of clinical investigation. | 2015 Jul 1; | 2808-24 | 26098214 |
| The macrophage phagocytic receptor CD36 promotes fibrogenic pathways on removal of apoptotic cells during chronic kidney injury. | Pennathur, Subramaniam; Pasichnyk, Katie; Bahrami, Nadia M; Zeng, Lixia; Febbraio, Maria; Yamaguchi, Ikuyo; Okamura, Daryl M | The American journal of pathology. | 2015 Aug; | 26092500 | |
| Gene Expression Signature in Adipose Tissue of Acromegaly Patients. | Hochberg, Irit; Tran, Quynh T; Barkan, Ariel L; Saltiel, Alan R; Chandler, William F; Bridges, Dave | PloS one. | 2015 Jun 18; | e0129359 | 26087292 |
| Use of Charged Nanoparticles in NMR-Based Metabolomics for Spectral Simplification and Improved Metabolite Identification. | Zhang, Bo; Xie, Mouzhe; Bruschweiler-Li, Lei; Bingol, Kerem; Brüschweiler, Rafael | Analytical chemistry. | 2015 Jul 21; | 7211-7 | 26087125 |
| Modulation of mitochondrial complex I activity averts cognitive decline in multiple animal models of familial Alzheimer's Disease. | Zhang, Liang; Zhang, Song; Maezawa, Izumi; Trushin, Sergey; Minhas, Paras; Pinto, Matthew; Jin, Lee-Way; Prasain, Keshar; Nguyen, Thi D T; Yamazaki, Yu; Kanekiyo, Takahisa; Bu, Guojun; Gateno, Benjamin; Chang, Kyeong-Ok; Nath, Karl A; Nemutlu, Emirhan; Dzeja, Petras; Pang, Yuan-Ping; Hua, Duy H; Trushina, Eugenia | EBioMedicine. | 2015 Apr 1; | 294-305 | 26086035 |
| Distribution and biomarker of carbon-14 labeled fullerene C60 ([(14) C(U)]C60 ) in pregnant and lactating rats and their offspring after maternal intravenous exposure. | Snyder, Rodney W; Fennell, Timothy R; Wingard, Christopher J; Mortensen, Ninell P; Holland, Nathan A; Shannahan, Jonathan H; Pathmasiri, Wimal; Lewin, Anita H; Sumner, Susan C J | Journal of applied toxicology : JAT. | 2015 Dec; | 1438-51 | 26081520 |
| Changes in Mineral Micronutrient Status During and After Pulmonary Exacerbation in Adults With Cystic Fibrosis. | Lee, Moon Jeong; Alvarez, Jessica A; Smith, Ellen M; Killilea, David W; Chmiel, James F; Joseph, Patricia M; Grossmann, Ruth E; Gaggar, Amit; Ziegler, Thomas R; Tangpricha, Vin; Vitamin D for Enhancing the Immune System in Cystic Fibrosis Investigators | Nutrition in clinical practice : official publication of the American Society for Parenteral and Enteral Nutrition. | 2015 Dec; | 26078287 | |
| Cross-talk between branched-chain amino acids and hepatic mitochondria is compromised in nonalcoholic fatty liver disease. | Sunny, Nishanth E; Kalavalapalli, Srilaxmi; Bril, Fernando; Garrett, Timothy J; Nautiyal, Manisha; Mathew, Justin T; Williams, Caroline M; Cusi, Kenneth | American journal of physiology. Endocrinology and metabolism. | 2015 Aug 15; | E311-9 | 26058864 |
| Inhibition of soluble epoxide hydrolase does not improve the course of congestive heart failure and the development of renal dysfunction in rats with volume overload induced by aorto-caval fistula. | ?ervenka, L; Melenovsk�, V; Huskov�, Z; Sporkov�, A; B�rgelov�, M; ?karoupkov�, P; Hwang, S H; Hammock, B D; Imig, J D; Sadowski, J | Physiological research / Academia Scientiarum Bohemoslovaca | 26047375 | ||
| Enhancing bottom-up and top-down proteomic measurements with ion mobility separations. | Baker, Erin Shammel; Burnum-Johnson, Kristin E; Ibrahim, Yehia M; Orton, Daniel J; Monroe, Matthew E; Kelly, Ryan T; Moore, Ronald J; Zhang, Xing; Théberge, Roger; Costello, Catherine E; Smith, Richard D | Proteomics. | 2015 Aug; | 2766-76 | 26046661 |
| PQBP1 Is a Proximal Sensor of the cGAS-Dependent Innate Response to HIV-1. | Yoh, Sunnie M; Schneider, Monika; Seifried, Janna; Soonthornvacharin, Stephen; Akleh, Rana E; Olivieri, Kevin C; De Jesus, Paul D; Ruan, Chunhai; de Castro, Elisa; Ruiz, Pedro A; Germanaud, David; des Portes, Vincent; García-Sastre, Adolfo; König, Renate; Chanda, Sumit K | Cell. | 2015 Jun 4; | 1293-305 | 26046437 |
| Infant Maturity at Birth Reveals Minor Differences in the Maternal Milk Metabolome in the First Month of Lactation. | Spevacek, Ann R; Smilowitz, Jennifer T; Chin, Elizabeth L; Underwood, Mark A; German, J Bruce; Slupsky, Carolyn M | The Journal of nutrition. | 2015 Aug; | 1698-708 | 26041675 |
| Metabolomics Reveals that Aryl Hydrocarbon Receptor Activation by Environmental Chemicals Induces Systemic Metabolic Dysfunction in Mice. | Zhang, Limin; Hatzakis, Emmanuel; Nichols, Robert G; Hao, Ruixin; Correll, Jared; Smith, Philip B; Chiaro, Christopher R; Perdew, Gary H; Patterson, Andrew D | Environmental science & technology. | 2015 Jul 7; | 8067-77 | 26023891 |
| Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism. | Edlund, Anna; Yang, Youngik; Yooseph, Shibu; Hall, Adam P; Nguyen, Don D; Dorrestein, Pieter C; Nelson, Karen E; He, Xuesong; Lux, Renate; Shi, Wenyuan; McLean, Jeffrey S | The ISME journal | 2015 Dec | 26023872 | |
| Eicosapentaenoic acid but not docosahexaenoic acid restores skeletal muscle mitochondrial oxidative capacity in old mice. | Johnson, Matthew L; Lalia, Antigoni Z; Dasari, Surendra; Pallauf, Maximilian; Fitch, Mark; Hellerstein, Marc K; Lanza, Ian R | Aging cell. | 2015 Oct; | 734-43 | 26010060 |
| A less-biased analysis of metalloproteins reveals novel zinc coordination geometries. | Yao, Sen; Flight, Robert M; Rouchka, Eric C; Moseley, Hunter N B | Proteins. | 2015 Aug; | 1470-87 | 26009987 |
| Defining the metabolome: size, flux, and regulation. | Zamboni, Nicola; Saghatelian, Alan; Patti, Gary J | Molecular cell. | 2015 May 21; | 699-706 | 26000853 |
| Epidermal Fatty Acid binding protein promotes skin inflammation induced by high-fat diet. | Zhang, Yuwen; Li, Qiang; Rao, Enyu; Sun, Yanwen; Grossmann, Michael E; Morris, Rebecca J; Cleary, Margot P; Li, Bing | Immunity. | 2015 May 19; | 953-64 | 25992864 |
| Hepatic insulin sensitivity in healthy and prediabetic subjects: from a dual- to a single-tracer oral minimal model. | Visentin, Roberto; Dalla Man, Chiara; Basu, Rita; Basu, Ananda; Rizza, Robert A; Cobelli, Claudio | American journal of physiology. Endocrinology and metabolism. | 2015 Jul 15; | E161-7 | 25991649 |
| Oxygen concentration controls epigenetic effects in models of familial paraganglioma. | Her, Yeng F; Nelson-Holte, Molly; Maher 3rd, Louis James | PloS one. | 2015; | 25985299 | |
| Differential Role of Insulin/IGF-1 Receptor Signaling in Muscle Growth and Glucose Homeostasis. | O'Neill, Brian T; Lauritzen, Hans P M M; Hirshman, Michael F; Smyth, Graham; Goodyear, Laurie J; Kahn, C Ronald | Cell reports. | 2015 May 26; | 1220-35 | 25981038 |
| Biochemical association of metabolic profile and microbiome in chronic pressure ulcer wounds. | Ammons, Mary Cloud B; Morrissey, Kathryn; Tripet, Brian P; Van Leuven, James T; Han, Anne; Lazarus, Gerald S; Zenilman, Jonathan M; Stewart, Philip S; James, Garth A; Copié, Valérie | PloS one. | 2015 May 15; | e0126735 | 25978400 |
| Genomic and experimental evidence for multiple metabolic functions in the RidA/YjgF/YER057c/UK114 (Rid) protein family. | Niehaus, Thomas D; Gerdes, Svetlana; Hodge-Hanson, Kelsey; Zhukov, Aleksey; Cooper, Arthur J L; ElBadawi-Sidhu, Mona; Fiehn, Oliver; Downs, Diana M; Hanson, Andrew D | BMC genomics. | 2015 May 15; | 382 | 25975565 |
| Utilizing magnetization transfer imaging to investigate tissue remodeling in a murine model of autosomal dominant polycystic kidney disease. | Kline, Timothy L; Irazabal, Maria V; Ebrahimi, Behzad; Hopp, Katharina; Udoji, Kelly N; Warner, Joshua D; Korfiatis, Panagiotis; Mishra, Prasanna K; Macura, Slobodan I; Venkatesh, Sudhakar K; Lerman, Lilach O; Harris, Peter C; Torres, Vicente E; King, Bernard F; Erickson, Bradley J | Magnetic resonance in medicine. | 2016 Apr; | 25974140 | |
| FoxO1 integrates direct and indirect effects of insulin on hepatic glucose production and glucose utilization. | O-Sullivan, InSug; Zhang, Wenwei; Wasserman, David H; Liew, Chong Wee; Liu, Jonathan; Paik, Jihye; DePinho, Ronald A; Stolz, Donna Beer; Kahn, C Ronald; Schwartz, Michael W; Unterman, Terry G | Nature communications. | 2015 May 12; | 7079 | 25963540 |
| MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. | Tsugawa, Hiroshi; Cajka, Tomas; Kind, Tobias; Ma, Yan; Higgins, Brendan; Ikeda, Kazutaka; Kanazawa, Mitsuhiro; VanderGheynst, Jean; Fiehn, Oliver; Arita, Masanori | Nature methods. | 2015 Jun; | 523-6 | 25938372 |
| (13)C NMR Metabolomics: INADEQUATE Network Analysis. | Clendinen, Chaevien S; Pasquel, Christian; Ajredini, Ramadan; Edison, Arthur S | Analytical chemistry. | 2015 Jun 2; | 5698-706 | 25932900 |
| Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus. | Cha, Jeeyeon; Burnum-Johnson, Kristin E; Bartos, Amanda; Li, Yingju; Baker, Erin S; Tilton, Susan C; Webb-Robertson, Bobbie-Jo M; Piehowski, Paul D; Monroe, Matthew E; Jegga, Anil G; Murata, Shigeo; Hirota, Yasushi; Dey, Sudhansu K | The Journal of biological chemistry. | 2015 Jun 12; | 15337-49 | 25931120 |
| Cybersecurity in Artificial Pancreas Experiments. | O'Keeffe, Derek T; Maraka, Spyridoula; Basu, Ananda; Keith-Hynes, Patrick; Kudva, Yogish C | Diabetes technology & therapeutics. | 2015 Sep; | 25923544 | |
| Cardiac resynchronization therapy induces adaptive metabolic transitions in the metabolomic profile of heart failure. | Nemutlu, Emirhan; Zhang, Song; Xu, Yi-Zhou; Terzic, Andre; Zhong, Li; Dzeja, Petras D; Cha, Yong-Mei | Journal of cardiac failure. | 2015 Jun; | 460-9 | 25911126 |
| Exercise effects on postprandial glucose metabolism in type 1 diabetes: a triple-tracer approach. | Mallad, Ashwini; Hinshaw, Ling; Schiavon, Michele; Dalla Man, Chiara; Dadlani, Vikash; Basu, Rita; Lingineni, Ravi; Cobelli, Claudio; Johnson, Matthew L; Carter, Rickey; Kudva, Yogish C; Basu, Ananda | American journal of physiology. Endocrinology and metabolism. | 2015 Jun 15; | E1106-15 | 25898950 |
| Metabolomic Analysis of Oxidative and Glycolytic Skeletal Muscles by Matrix-Assisted Laser Desorption/IonizationMass Spectrometric Imaging (MALDI MSI). | Tsai, Yu-Hsuan; Garrett, Timothy J; Carter, Christy S; Yost, Richard A | Journal of the American Society for Mass Spectrometry. | 2015 Jun; | 915-23 | 25893271 |
| Applications of Multiple Reaction Monitoring to Clinical Glycomics. | Ruhaak, L Renee; Lebrilla, Carlito B | Chromatographia. | 2015 Mar 1; | 335-342 | 25892741 |
| Kernel approaches for differential expression analysis of mass spectrometry-based metabolomics data. | Zhan, Xiang; Patterson, Andrew D; Ghosh, Debashis | BMC bioinformatics. | 2015 Mar 11; | 77 | 25887233 |
| Ion Mobility and Tandem Mass Spectrometry of Phosphatidylglycerol and Bis(monoacylglycerol)phosphate (BMP). | Hankin, Joseph A; Murphy, Robert C; Barkley, Robert M; Gijón, Miguel A | International journal of mass spectrometry. | 2015 Feb 15; | 255-263 | 25883529 |
| Adipose Tissue Free Fatty Acid Storage In Vivo: Effects of Insulin Versus Niacin as a Control for Suppression of Lipolysis. | Ali, Asem H; Mundi, Manpreet; Koutsari, Christina; Bernlohr, David A; Jensen, Michael D | Diabetes. | 2015 Aug; | 2828-35 | 25883112 |
| NMR/MS Translator for the Enhanced Simultaneous Analysis of Metabolomics Mixtures by NMR Spectroscopy and Mass Spectrometry: Application to Human Urine. | Bingol, Kerem; Brüschweiler, Rafael | Journal of proteome research. | 2015 Jun 5; | 2642-8 | 25881480 |
| Obesity Increases Mortality and Modulates the Lung Metabolome during Pandemic H1N1 Influenza Virus Infection in Mice. | Milner, J Justin; Rebeles, Jenny; Dhungana, Suraj; Stewart, Delisha A; Sumner, Susan C J; Meyers, Matthew H; Mancuso, Peter; Beck, Melinda A | Journal of immunology (Baltimore, Md. : 1950). | 2015 May 15; | 4846-59 | 25862817 |
| Effects of Dietary n-3 Fatty Acids on Hepatic and Peripheral Insulin Sensitivity in Insulin-Resistant Humans. | Lalia, Antigoni Z; Johnson, Matthew L; Jensen, Michael D; Hames, Kazanna C; Port, John D; Lanza, Ian R | Diabetes care. | 2015 Jul; | 1228-37 | 25852206 |
| Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia. | Fahrmann, Johannes; Grapov, Dmitry; Yang, Jun; Hammock, Bruce; Fiehn, Oliver; Bell, Graeme I; Hara, Manami | American journal of physiology. Endocrinology and metabolism. | 2015 Jun 1; | E978-89 | 25852003 |
| Profiles of 21-Carbon Steroids in 21-hydroxylase Deficiency. | Turcu, Adina F; Rege, Juilee; Chomic, Robert; Liu, Jiayan; Nishimoto, Hiromi K; Else, Tobias; Moraitis, Andreas G; Palapattu, Ganesh S; Rainey, William E; Auchus, Richard J | The Journal of clinical endocrinology and metabolism. | 2015 Jun; | 2283-90 | 25850025 |
| MetaMapR: pathway independent metabolomic network analysis incorporating unknowns. | Grapov, Dmitry; Wanichthanarak, Kwanjeera; Fiehn, Oliver | Bioinformatics (Oxford, England). | 2015 Aug 15; | 2757-60 | 25847005 |
| Melatonin prevents myeloperoxidase heme destruction and the generation of free iron mediated by self-generated hypochlorous acid. | Shaeib, Faten; Khan, Sana N; Ali, Iyad; Najafi, Tohid; Maitra, Dhiman; Abdulhamid, Ibrahim; Saed, Ghassan M; Pennathur, Subramaniam; Abu-Soud, Husam M | PloS one. | 2015 Apr 2; | e0120737 | 25835505 |
| Habitual physical activity and plasma metabolomic patterns distinguish individuals with low vs. high weight loss during controlled energy restriction. | Piccolo, Brian D; Keim, Nancy L; Fiehn, Oliver; Adams, Sean H; Van Loan, Marta D; Newman, John W | The Journal of nutrition. | 2015 Apr; | 681-90 | 25833772 |
| Application of high-resolution mass spectrometry to measure low abundance isotope enrichment in individual muscle proteins. | Hines, Kelly M; Ford, G Charles; Klaus, Katherine A; Irving, Brian A; Ford, Beverly L; Johnson, Kenneth L; Lanza, Ian R; Nair, K Sreekumaran | Analytical and bioanalytical chemistry. | 2015 May; | 4045-52 | 25832482 |
| Evidence for a link between gut microbiota and hypertension in the Dahl rat. | Mell, Blair; Jala, Venkatakrishna R; Mathew, Anna V; Byun, Jaeman; Waghulde, Harshal; Zhang, Youjie; Haribabu, Bodduluri; Vijay-Kumar, Matam; Pennathur, Subramaniam; Joe, Bina | Physiological genomics. | 2015 Jun; | 187-97 | 25829393 |
| Inhibition of soluble epoxide hydrolase attenuates hepatic fibrosis and endoplasmic reticulum stress induced by carbon tetrachloride in mice. | Harris, Todd R; Bettaieb, Ahmed; Kodani, Sean; Dong, Hua; Myers, Richard; Chiamvimonvat, Nipavan; Haj, Fawaz G; Hammock, Bruce D | Toxicology and applied pharmacology. | 2015 Jul 15; | 102-11 | 25827057 |
| Dysregulation of soluble epoxide hydrolase and lipidomic profiles in anorexia nervosa. | Shih, P B; Yang, J; Morisseau, C; German, J B; Zeeland, A A Scott-Van; Armando, A M; Quehenberger, O; Bergen, A W; Magistretti, P; Berrettini, W; Halmi, K A; Schork, N; Hammock, B D; Kaye, W | Molecular psychiatry. | 2015 Mar 31; | 25824304 | |
| Germline mutations in ETV6 are associated with thrombocytopenia, red cell macrocytosis and predisposition to lymphoblastic leukemia. | Noetzli, Leila; Lo, Richard W; Lee-Sherick, Alisa B; Callaghan, Michael; Noris, Patrizia; Savoia, Anna; Rajpurkar, Madhvi; Jones, Kenneth; Gowan, Katherine; Balduini, Carlo L; Pecci, Alessandro; Gnan, Chiara; De Rocco, Daniela; Doubek, Michael; Li, Ling; Lu, Lily; Leung, Richard; Landolt-Marticorena, Carolina; Hunger, Stephen; Heller, Paula; Gutierrez-Hartmann, Arthur; Xiayuan, Liang; Pluthero, Fred G; Rowley, Jesse W; Weyrich, Andrew S; Kahr, Walter H A; Porter, Christopher C; Di Paola, Jorge | Nature genetics. | 2015 May; | 535-8 | 25807284 |
| Mass Spectrometry Analysis of Pseudomonas aeruginosa Treated with Azithromycin. | Phelan, Vanessa V; Fang, Jinshu; Dorrestein, Pieter C | Journal of the American Society for Mass Spectrometry. | 2015 Jun; | 873-7 | 25801585 |
| Effects of acute exposure to increased plasma branched-chain amino acid concentrations on insulin-mediated plasma glucose turnover in healthy young subjects. | Everman, Sarah; Mandarino, Lawrence J; Carroll, Chad C; Katsanos, Christos S | PloS one. | 2015; | 25781654 | |
| Persistent Organic Pollutants Modify Gut Microbiota-Host Metabolic Homeostasis in Mice Through Aryl Hydrocarbon Receptor Activation. | Zhang, Limin; Nichols, Robert G; Correll, Jared; Murray, Iain A; Tanaka, Naoki; Smith, Philip B; Hubbard, Troy D; Sebastian, Aswathy; Albert, Istvan; Hatzakis, Emmanuel; Gonzalez, Frank J; Perdew, Gary H; Patterson, Andrew D | Environmental health perspectives. | 2015 Jul; | 679-88 | 25768209 |
| Developmental programming: exposure to testosterone excess disrupts steroidal and metabolic environment in pregnant sheep. | Abi Salloum, B; Veiga-Lopez, A; Abbott, D H; Burant, C F; Padmanabhan, V | Endocrinology. | 2015 Jun; | 2323-37 | 25763641 |
| Deficiency of AMPK in CD8+ T cells suppresses their anti-tumor function by inducing protein phosphatase-mediated cell death. | Rao, Enyu; Zhang, Yuwen; Zhu, Ganqian; Hao, Jiaqing; Persson, Xuan-Mai T; Egilmez, Nejat K; Suttles, Jill; Li, Bing | Oncotarget. | 2015 Apr 10; | 7944-58 | 25760243 |
| Association of UCP-3 rs1626521 with obesity and stomach functions in humans. | Acosta, Andres; Camilleri, Michael; Shin, Andrea; Vazquez-Roque, Maria I; Iturrino, Johanna; Lanza, Ian R; Nair, K Sreekumaran; Burton, Duane; O'Neill, Jessica; Eckert, Deborah; Carlson, Paula; Vella, Adrian; Zinsmeister, Alan R | Obesity (Silver Spring, Md.). | 2015 Apr; | 898-906 | 25755013 |
| Maximal oxidative capacity during exercise is associated with skeletal muscle fuel selection and dynamic changes in mitochondrial protein acetylation. | Overmyer, Katherine A; Evans, Charles R; Qi, Nathan R; Minogue, Catherine E; Carson, Joshua J; Chermside-Scabbo, Christopher J; Koch, Lauren G; Britton, Steven L; Pagliarini, David J; Coon, Joshua J; Burant, Charles F | Cell metabolism. | 2015 Mar 3; | 468-78 | 25738461 |
| Will the 40-gene expression classifier predict responders to EGFR targeted chemotherapy for the invasive bladder cancer patients? | Kim, Jayoung; Kim, Wun-Jae | Annals of translational medicine. | 2015 Feb; | 25738138 | |
| Role of fibroblast growth factor 21 in the early stage of NASH induced by methionine- and choline-deficient diet. | Tanaka, Naoki; Takahashi, Shogo; Zhang, Yuan; Krausz, Kristopher W; Smith, Philip B; Patterson, Andrew D; Gonzalez, Frank J | Biochimica et biophysica acta. | 2015 Jul; | 1242-52 | 25736301 |
| Effect of insulin sensitizer therapy on amino acids and their metabolites. | Irving, Brian A; Carter, Rickey E; Soop, Mattias; Weymiller, Audrey; Syed, Husnain; Karakelides, Helen; Bhagra, Sumit; Short, Kevin R; Tatpati, Laura; Barazzoni, Rocco; Nair, K Sreekumaran | Metabolism: clinical and experimental. | 2015 Jun; | 720-8 | 25733201 |
| Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. | Chassaing, Benoit; Koren, Omry; Goodrich, Julia K; Poole, Angela C; Srinivasan, Shanthi; Ley, Ruth E; Gewirtz, Andrew T | Nature. | 2015 Mar 5; | 25731162 | |
| Distribution and biomarkers of carbon-14-labeled fullerene C60 ([(14) C(U)]C60 ) in female rats and mice for up to 30 days after intravenous exposure. | Sumner, Susan C J; Snyder, Rodney W; Wingard, Christopher; Mortensen, Ninell P; Holland, Nathan A; Shannahan, Jonathan H; Dhungana, Suraj; Pathmasiri, Wimal; Han, Li; Lewin, Anita H; Fennell, Timothy R | Journal of applied toxicology : JAT. | 2015 Dec; | 25727383 | |
| Impact of storage conditions on metabolite profiles of sputum samples from persons with cystic fibrosis. | Zhao, Jiangchao; Evans, Charles R; Carmody, Lisa A; LiPuma, John J | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society. | 2015 Jul; | 468-73 | 25725986 |
| Metabolomics and diabetes: analytical and computational approaches. | Sas, Kelli M; Karnovsky, Alla; Michailidis, George; Pennathur, Subramaniam | Diabetes. | 2015 Mar; | 718-32 | 25713200 |
| Does our gut microbiome predict cardiovascular risk? A review of the evidence from metabolomics. | Griffin, Julian L; Wang, Xinzhu; Stanley, Elizabeth | Circulation. Cardiovascular genetics. | 2015 Feb; | 187-91 | 25691688 |
| Discriminating precursors of common fragments for large-scale metabolite profiling by triple quadrupole mass spectrometry. | Nikolskiy, Igor; Siuzdak, Gary; Patti, Gary J | Bioinformatics (Oxford, England). | 2015 Jun 15; | 2017-23 | 25691443 |
| Epoxide hydrolase activities and epoxy fatty acids in the mosquito Culex quinquefasciatus. | Xu, Jiawen; Morisseau, Christophe; Yang, Jun; Mamatha, Dadala M; Hammock, Bruce D | Insect biochemistry and molecular biology. | 2015 Apr; | 41-9 | 25686802 |
| Association of branched and aromatic amino acids levels with metabolic syndrome and impaired fasting glucose in hypertensive patients. | Weng, Liming; Quinlivan, Eoin; Gong, Yan; Beitelshees, Amber L; Shahin, Mohamed H; Turner, Stephen T; Chapman, Arlene B; Gums, John G; Johnson, Julie A; Frye, Reginald F; Garrett, Timothy J; Cooper-DeHoff, Rhonda M | Metabolic syndrome and related disorders. | 2015 Jun; | 25664967 | |
| Impact of anesthesia and euthanasia on metabolomics of mammalian tissues: studies in a C57BL/6J mouse model. | Overmyer, Katherine A; Thonusin, Chanisa; Qi, Nathan R; Burant, Charles F; Evans, Charles R | PloS one. | 2015 Feb 6; | e0117232 | 25658945 |
| Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma. | Wikoff, William R; Grapov, Dmitry; Fahrmann, Johannes F; DeFelice, Brian; Rom, William N; Pass, Harvey I; Kim, Kyoungmi; Nguyen, UyenThao; Taylor, Sandra L; Gandara, David R; Kelly, Karen; Fiehn, Oliver; Miyamoto, Suzanne | Cancer prevention research (Philadelphia, Pa.). | 2015 May; | 410-8 | 25657018 |
| Gene expression profiling in pachyonychia congenita skin. | Cao, Yu-An; Hickerson, Robyn P; Seegmiller, Brandon L; Grapov, Dmitry; Gross, Maren M; Bessette, Marc R; Phinney, Brett S; Flores, Manuel A; Speaker, Tycho J; Vermeulen, Annaleen; Bravo, Albert A; Bruckner, Anna L; Milstone, Leonard M; Schwartz, Mary E; Rice, Robert H; Kaspar, Roger L | Journal of dermatological science. | 2015 Mar; | 156-65 | 25656049 |
| Isofunctional enzymes PAD1 and UbiX catalyze formation of a novel cofactor required by ferulic acid decarboxylase and 4-hydroxy-3-polyprenylbenzoic acid decarboxylase. | Lin, Fengming; Ferguson, Kyle L; Boyer, David R; Lin, Xiaoxia Nina; Marsh, E Neil G | ACS chemical biology. | 2015 Apr 17; | 1137-44 | 25647642 |
| Site-specific glycosylation of secretory immunoglobulin A from human colostrum. | Huang, Jincui; Guerrero, Andres; Parker, Evan; Strum, John S; Smilowitz, Jennifer T; German, J Bruce; Lebrilla, Carlito B | Journal of proteome research. | 2015 Mar 6; | 1335-49 | 25629924 |
| Acute and chronic plasma metabolomic and liver transcriptomic stress effects in a mouse model with features of post-traumatic stress disorder. | Gautam, Aarti; D'Arpa, Peter; Donohue, Duncan E; Muhie, Seid; Chakraborty, Nabarun; Luke, Brian T; Grapov, Dmitry; Carroll, Erica E; Meyerhoff, James L; Hammamieh, Rasha; Jett, Marti | PloS one. | 2015 Jan 28; | e0117092 | 25629821 |
| Regulation of mammalian nucleotide metabolism and biosynthesis. | Lane, Andrew N; Fan, Teresa W-M | Nucleic acids research. | 2015 Feb 27; | 2466-85 | 25628363 |
| Chemoselective detection and discrimination of carbonyl-containing compounds in metabolite mixtures by 1H-detected 15N nuclear magnetic resonance. | Lane, Andrew N; Arumugam, Sengodagounder; Lorkiewicz, Pawel K; Higashi, Richard M; Laulhe, Sebastien; Nantz, Michael H; Moseley, Hunter N B; Fan, Teresa W-M | Magnetic resonance in chemistry : MRC. | 2015 May; | 337-43 | 25616249 |
| Pyruvate carboxylase is critical for non-small-cell lung cancer proliferation. | Sellers, Katherine; Fox, Matthew P; Bousamra 2nd, Michael; Slone, Stephen P; Higashi, Richard M; Miller, Donald M; Wang, Yali; Yan, Jun; Yuneva, Mariia O; Deshpande, Rahul; Lane, Andrew N; Fan, Teresa W-M | The Journal of clinical investigation. | 2015 Feb; | 687-98 | 25607840 |
| Defects in Mitochondrial Efficiency and H2O2 Emissions in Obese Women Are Restored to a Lean Phenotype With Aerobic Exercise Training. | Konopka, Adam R; Asante, Albert; Lanza, Ian R; Robinson, Matthew M; Johnson, Matthew L; Dalla Man, Chiara; Cobelli, Claudio; Amols, Mark H; Irving, Brian A; Nair, K S | Diabetes. | 2015 Jun; | 2104-15 | 25605809 |
| Quantitative analysis of purine nucleotides indicates that purinosomes increase de novo purine biosynthesis. | Zhao, Hong; Chiaro, Christopher R; Zhang, Limin; Smith, Philip B; Chan, Chung Yu; Pedley, Anthony M; Pugh, Raymond J; French, Jarrod B; Patterson, Andrew D; Benkovic, Stephen J | The Journal of biological chemistry. | 2015 Mar 13; | 6705-13 | 25605736 |
| Impact of gestational bisphenol A on oxidative stress and free fatty acids: Human association and interspecies animal testing studies. | Veiga-Lopez, Almudena; Pennathur, Subramaniam; Kannan, Kurunthachalam; Patisaul, Heather B; Dolinoy, Dana C; Zeng, Lixia; Padmanabhan, Vasantha | Endocrinology. | 2015 Mar; | 911-22 | 25603046 |
| DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics. | Tsou, Chih-Chiang; Avtonomov, Dmitry; Larsen, Brett; Tucholska, Monika; Choi, Hyungwon; Gingras, Anne-Claude; Nesvizhskii, Alexey I | Nature methods. | 2015 Mar; | 258-64, 7 p following 264 | 25599550 |
| Adipose fatty acid oxidation is required for thermogenesis and potentiates oxidative stress-induced inflammation. | Lee, Jieun; Ellis, Jessica M; Wolfgang, Michael J | Cell reports. | 2015 Jan 13; | 266-79 | 25578732 |
| Aryl hydrocarbon receptor ligands in cancer: friend and foe. | Murray, Iain A; Patterson, Andrew D; Perdew, Gary H | Nature reviews. Cancer. | 2014 Dec; | 801-14 | 25568920 |
| Effects of tigecycline and vancomycin administration on established Clostridium difficile infection. | Theriot, Casey M; Schumacher, Cassie A; Bassis, Christine M; Seekatz, Anna M; Young, Vincent B | Antimicrobial agents and chemotherapy. | 2015 Mar; | 1596-604 | 25547352 |
| Dynamics and establishment of Clostridium difficile infection in the murine gastrointestinal tract. | Koenigsknecht, Mark J; Theriot, Casey M; Bergin, Ingrid L; Schumacher, Cassie A; Schloss, Patrick D; Young, Vincent B | Infection and immunity. | 2015 Mar; | 934-41 | 25534943 |
| Circadian variability of insulin sensitivity: physiological input for in silico artificial pancreas. | Visentin, Roberto; Dalla Man, Chiara; Kudva, Yogish C; Basu, Ananda; Cobelli, Claudio | Diabetes technology & therapeutics. | 2015 Jan; | 42011 | 25531427 |
| High-dose simvastatin exhibits enhanced lipid-lowering effects relative to simvastatin/ezetimibe combination therapy. | Snowden, Stuart G; Grapov, Dmitry; Settergren, Magnus; D'Alexandri, Fabio Luiz; Haeggstrom, Jesper Z; Fiehn, Oliver; Hyotylainen, Tuulia; Pedersen, Theresa L; Newman, John W; Oresic, Matej; Pernow, John; Wheelock, Craig E | Circulation. Cardiovascular genetics. | 2014 Dec; | 955-64 | 25516625 |
| Differential Effect of Endurance Training on Mitochondrial Protein Damage, Degradation, and Acetylation in the Context of Aging. | Johnson, Matthew L; Irving, Brian A; Lanza, Ian R; Vendelbo, Mikkel H; Konopka, Adam R; Robinson, Matthew M; Henderson, Gregory C; Klaus, Katherine A; Morse, Dawn M; Heppelmann, Carrie; Bergen 3rd, H Robert; Dasari, Surendra; Schimke, Jill M; Jakaitis, Daniel R; Nair, K Sreekumaran | The journals of gerontology. Series A, Biological sciences and medical sciences. | 2014 Dec 10; | 25504576 | |
| Intestinal farnesoid X receptor signaling promotes nonalcoholic fatty liver disease. | Jiang, Changtao; Xie, Cen; Li, Fei; Zhang, Limin; Nichols, Robert G; Krausz, Kristopher W; Cai, Jingwei; Qi, Yunpeng; Fang, Zhong-Ze; Takahashi, Shogo; Tanaka, Naoki; Desai, Dhimant; Amin, Shantu G; Albert, Istvan; Patterson, Andrew D; Gonzalez, Frank J | The Journal of clinical investigation. | 2015 Jan; | 386-402 | 25500885 |
| Pharmacometabolomics of l-carnitine treatment response phenotypes in patients with septic shock. | Puskarich, Michael A; Finkel, Michael A; Karnovsky, Alla; Jones, Alan E; Trexel, Julie; Harris, Brooke N; Stringer, Kathleen A | Annals of the American Thoracic Society. | 2015 Jan; | 46-56 | 25496487 |
| Autonomous metabolomics for rapid metabolite identification in global profiling. | Benton, H Paul; Ivanisevic, Julijana; Mahieu, Nathaniel G; Kurczy, Michael E; Johnson, Caroline H; Franco, Lauren; Rinehart, Duane; Valentine, Elizabeth; Gowda, Harsha; Ubhi, Baljit K; Tautenhahn, Ralf; Gieschen, Andrew; Fields, Matthew W; Patti, Gary J; Siuzdak, Gary | Analytical chemistry. | 2015 Jan 20; | 884-91 | 25496351 |
| Cardiac steatosis potentiates angiotensin II effects in the heart. | Glenn, Denis J; Cardema, Michelle C; Ni, Wei; Zhang, Yan; Yeghiazarians, Yerem; Grapov, Dmitry; Fiehn, Oliver; Gardner, David G | American journal of physiology. Heart and circulatory physiology. | 2015 Feb 15; | H339-50 | 25485904 |
| Diet and feeding pattern affect the diurnal dynamics of the gut microbiome. | Zarrinpar, Amir; Chaix, Amandine; Yooseph, Shibu; Panda, Satchidananda | Cell metabolism. | 2014 Dec 2; | 1006-17 | 25470548 |
| Commensal microbiota is hepatoprotective and prevents liver fibrosis in mice. | Mazagova, Magdalena; Wang, Lirui; Anfora, Andrew T; Wissmueller, Max; Lesley, Scott A; Miyamoto, Yukiko; Eckmann, Lars; Dhungana, Suraj; Pathmasiri, Wimal; Sumner, Susan; Westwater, Caroline; Brenner, David A; Schnabl, Bernd | FASEB journal : official publication of the Federation of American Societies for Experimental Biology. | 2015 Mar; | 1043-55 | 25466902 |
| Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study. | Shellman, Erin R; Chen, Yu; Lin, Xiaoxia; Burant, Charles F; Schnell, Santiago | Computational biology and chemistry. | 2014 Sep 21; | 242-250 | 25462333 |
| Glutamine oxidation maintains the TCA cycle and cell survival during impaired mitochondrial pyruvate transport. | Yang, Chendong; Ko, Bookyung; Hensley, Christopher T; Jiang, Lei; Wasti, Ajla T; Kim, Jiyeon; Sudderth, Jessica; Calvaruso, Maria Antonietta; Lumata, Lloyd; Mitsche, Matthew; Rutter, Jared; Merritt, Matthew E; DeBerardinis, Ralph J | Molecular cell. | 2014 Nov 6; | 414-24 | 25458842 |
| A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis. | Frelin, Oceane; Huang, Lili; Hasnain, Ghulam; Jeffryes, James G; Ziemak, Michael J; Rocca, James R; Wang, Bing; Rice, Jennifer; Roje, Sanja; Yurgel, Svetlana N; Gregory 3rd, Jesse F; Edison, Arthur S; Henry, Christopher S; de Crecy-Lagard, Valerie; Hanson, Andrew D | The Biochemical journal. | 2015 Feb 15; | 137-45 | 25431972 |
| The need for reflective consideration of an integrative understanding of cardiovascular consequences to PVP formulated C60 exposure. | Wingard, Christopher J; Holland, Nathan A; Thompson, Leslie C; Brown, Jared M; Lewin, Anita H; Sumner, Susan J; Fennell, Timothy R; Vidanapathirana, Achini K | Toxicological sciences : an official journal of the Society of Toxicology. | 2014 Oct; | 327-8 | 25422842 |
| Top-down analysis of highly post-translationally modified peptides by fourier transform ion cyclotron resonance mass spectrometry. | Guerrero, Andres; Lerno, Larry; Barile, Daniela; Lebrilla, Carlito B | Journal of the American Society for Mass Spectrometry. | 2015 Mar; | 453-9 | 25404158 |
| Effects of soluble epoxide hydrolase deficiency on acute pancreatitis in mice. | Bettaieb, Ahmed; Chahed, Samah; Tabet, George; Yang, Jun; Morisseau, Christophe; Griffey, Stephen; Hammock, Bruce D; Haj, Fawaz G | PloS one. | 2014; | e113019 | 25402489 |
| The use of metabolomics in population-based research. | Su, L Joseph; Fiehn, Oliver; Maruvada, Padma; Moore, Steven C; O'Keefe, Stephen J; Wishart, David S; Zanetti, Krista A | Advances in nutrition (Bethesda, Md.). | 2014 Nov; | 785-8 | 25398741 |
| (1)H NMR Metabolomics Study of Metastatic Melanoma in C57BL/6J Mouse Spleen. | Wang, Xuan; Hu, Mary; Feng, Ju; Liu, Maili; Hu, Jian Zhi | Metabolomics : Official journal of the Metabolomic Society. | 2014 Dec; | 1129-1144 | 25383071 |
| Relative roles of ABCG5/ABCG8 in liver and intestine. | Wang, Jin; Mitsche, Matthew A; Lutjohann, Dieter; Cohen, Jonathan C; Xie, Xiao-Song; Hobbs, Helen H | Journal of lipid research. | 2015 Feb; | 319-30 | 25378657 |
| Identifying individual differences of fluoxetine response in juvenile rhesus monkeys by metabolite profiling. | He, Y; Hogrefe, C E; Grapov, D; Palazoglu, M; Fiehn, O; Turck, C W; Golub, M S | Translational psychiatry. | 2014; | e478 | 25369145 |
| LC-MS metabolomics of psoriasis patients reveals disease severity-dependent increases in circulating amino acids that are ameliorated by anti-TNF* treatment. | Kamleh, Muhammad Anas; Snowden, Stuart G; Grapov, Dmitry; Blackburn, Gavin J; Watson, David G; Xu, Ning; Stahle, Mona; Wheelock, Craig E | Journal of proteome research. | 2015 Jan 2; | 557-66 | 25361234 |
| Rapid-throughput glycomics applied to human milk oligosaccharide profiling for large human studies. | Totten, Sarah M; Wu, Lauren D; Parker, Evan A; Davis, Jasmine C C; Hua, Serenus; Stroble, Carol; Ruhaak, L Renee; Smilowitz, Jennifer T; German, J Bruce; Lebrilla, Carlito B | Analytical and bioanalytical chemistry. | 2014 Dec; | 7925-35 | 25358913 |
| Urinary metabolite profiling combined with computational analysis predicts interstitial cystitis-associated candidate biomarkers. | Wen, He; Lee, Tack; You, Sungyong; Park, Soo-Hwan; Song, Hosook; Eilber, Karyn S; Anger, Jennifer T; Freeman, Michael R; Park, Sunghyouk; Kim, Jayoung | Journal of proteome research. | 2015 Jan 2; | 541-8 | 25353990 |
| LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries. | Kind, Tobias; Okazaki, Yozo; Saito, Kazuki; Fiehn, Oliver | Analytical chemistry. | 2014 Nov 18; | 11024-7 | 25340521 |
| The human colostrum whey proteome is altered in gestational diabetes mellitus. | Grapov, Dmitry; Lemay, Danielle G; Weber, Darren; Phinney, Brett S; Azulay Chertok, Ilana R; Gho, Deborah S; German, J Bruce; Smilowitz, Jennifer T | Journal of proteome research. | 2015 Jan 2; | 512-20 | 25338220 |
| Unified and isomer-specific NMR metabolomics database for the accurate analysis of (13)C-(1)H HSQC spectra. | Bingol, Kerem; Li, Da-Wei; Bruschweiler-Li, Lei; Cabrera, Oscar A; Megraw, Timothy; Zhang, Fengli; Bruschweiler, Rafael | ACS chemical biology. | 2015 Feb 20; | 452-9 | 25333826 |
| Decreased bacterial diversity characterizes the altered gut microbiota in patients with psoriatic arthritis, resembling dysbiosis in inflammatory bowel disease. | Scher, Jose U; Ubeda, Carles; Artacho, Alejandro; Attur, Mukundan; Isaac, Sandrine; Reddy, Soumya M; Marmon, Shoshana; Neimann, Andrea; Brusca, Samuel; Patel, Tejas; Manasson, Julia; Pamer, Eric G; Littman, Dan R; Abramson, Steven B | Arthritis & rheumatology (Hoboken, N.J.). | 2015 Jan; | 25319745 | |
| Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry. | Cajka, Tomas; Fiehn, Oliver | Trends in analytical chemistry : TRAC. | 2014 Oct 1; | 192-206 | 25309011 |
| Development of an analytical method for assessment of silver nanoparticle content in biological matrices by inductively coupled plasma mass spectrometry. | Poitras, Eric P; Levine, Michael A; Harrington, James M; Essader, Amal S; Fennell, Timothy R; Snyder, Rodney W; Black, Sherry L; Sumner, Susan S; Levine, Keith E | Biological trace element research. | 2015 Feb; | 184-92 | 25308764 |
| Cold adaptation shapes the robustness of metabolic networks in Drosophila melanogaster. | Williams, Caroline M; Watanabe, Miki; Guarracino, Mario R; Ferraro, Maria B; Edison, Arthur S; Morgan, Theodore J; Boroujerdi, Arezue F B; Hahn, Daniel A | Evolution; international journal of organic evolution. | 2014 Dec; | 3505-23 | 25308124 |
| Time lag of glucose from intravascular to interstitial compartment in type 1 diabetes. | Basu, Ananda; Dube, Simmi; Veettil, Sona; Slama, Michael; Kudva, Yogish C; Peyser, Thomas; Carter, Rickey E; Cobelli, Claudio; Basu, Rita | Journal of diabetes science and technology. | 2015 Jan; | 63-8 | 25305282 |
| 11*-hydroxysteroid dehydrogenase types 1 and 2 activity in subcutaneous adipose tissue in humans: implications in obesity and diabetes. | Dube, Simmi; Norby, Barbara J; Pattan, Vishwanath; Carter, Rickey E; Basu, Ananda; Basu, Rita | The Journal of clinical endocrinology and metabolism. | 2015 Jan; | E70-6 | 25303491 |
| Bifidobacterium longum subspecies infantis: champion colonizer of the infant gut. | Underwood, Mark A; German, J Bruce; Lebrilla, Carlito B; Mills, David A | Pediatric research. | 2015 Jan; | 229-35 | 25303277 |
| The urinary metabolomics profile of an Italian autistic children population and their unaffected siblings. | Noto, Antonio; Fanos, Vassilios; Barberini, Luigi; Grapov, Dmitry; Fattuoni, Claudia; Zaffanello, Marco; Casanova, Andrea; Fenu, Gianni; De Giacomo, Andrea; De Angelis, Maria; Moretti, Corrado; Papoff, Paola; Ditonno, Raffaella; Francavilla, Ruggiero | The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. | 2014 Oct; | 46-52 | 25284177 |
| Urinary metabolomics (GC-MS) reveals that low and high birth weight infants share elevated inositol concentrations at birth. | Barberini, Luigi; Noto, Antonio; Fattuoni, Claudia; Grapov, Dmitry; Casanova, Andrea; Fenu, Gianni; Gaviano, Mauro; Carboni, Roberta; Ottonello, Giovanni; Crisafulli, Maurizio; Fanos, Vassilios; Dessi, Angelica | The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. | 2014 Oct; | 20-6 | 25284173 |
| Deletion of ELOVL6 blocks the synthesis of oleic acid but does not prevent the development of fatty liver or insulin resistance. | Moon, Young-Ah; Ochoa, Courtney R; Mitsche, Matthew A; Hammer, Robert E; Horton, Jay D | Journal of lipid research. | 2014 Dec; | 2597-605 | 25281760 |
| Metabolomics insights into pathophysiological mechanisms of interstitial cystitis. | Fiehn, Oliver; Kim, Jayoung | International neurourology journal. | 2014 Sep; | 25279237 | |
| Stable isotope-labeled tracers for metabolic pathway elucidation by GC-MS and FT-MS. | Higashi, Richard M; Fan, Teresa W-M; Lorkiewicz, Pawel K; Moseley, Hunter N B; Lane, Andrew N | Methods in molecular biology (Clifton, N.J.). | 2014; | 147-67 | 25270929 |
| MS2Analyzer: A software for small molecule substructure annotations from accurate tandem mass spectra. | Ma, Yan; Kind, Tobias; Yang, Dawei; Leon, Carlos; Fiehn, Oliver | Analytical chemistry. | 2014 Nov 4; | 10724-31 | 25263576 |
| Different mechanisms of acute versus long-term antihypertensive effects of soluble epoxide hydrolase inhibition: studies in Cyp1a1-Ren-2 transgenic rats. | Sporkova, Alexandra; Jichova, Sarka; Huskova, Zuzana; Kopkan, Libor; Nishiyama, Akira; Hwang, Sung H; Hammock, Bruce D; Imig, John D; Kompanowska-Jezierska, Elzbieta; Sadowski, Janusz; Kramer, Herbert J; Cervenka, Ludek | Clinical and experimental pharmacology & physiology. | 2014 Dec; | 1003-13 | 25224811 |
| High insulin combined with essential amino acids stimulates skeletal muscle mitochondrial protein synthesis while decreasing insulin sensitivity in healthy humans. | Robinson, Matthew M; Soop, Mattias; Sohn, Tae Seo; Morse, Dawn M; Schimke, Jill M; Klaus, Katherine A; Nair, K Sreekumaran | The Journal of clinical endocrinology and metabolism. | 2014 Dec; | E2574-83 | 25222757 |
| Disruption of heme-peptide covalent cross-linking in mammalian peroxidases by hypochlorous acid. | Abu-Soud, Husam M; Maitra, Dhiman; Shaeib, Faten; Khan, Sana N; Byun, Jaeman; Abdulhamid, Ibrahim; Yang, Zhe; Saed, Ghassan M; Diamond, Michael P; Andreana, Peter R; Pennathur, Subramaniam | Journal of inorganic biochemistry. | 2014 Nov; | 245-54 | 25193127 |
| Effects of increased free fatty acid availability on adipose tissue fatty acid storage in men. | Mundi, Manpreet S; Koutsari, Chistina; Jensen, Michael D | The Journal of clinical endocrinology and metabolism. | 2014 Dec; | E2635-42 | 25192251 |
| Crucial role of macrophage selenoproteins in experimental colitis. | Kaushal, Naveen; Kudva, Avinash K; Patterson, Andrew D; Chiaro, Christopher; Kennett, Mary J; Desai, Dhimant; Amin, Shantu; Carlson, Bradley A; Cantorna, Margherita T; Prabhu, K Sandeep | Journal of immunology (Baltimore, Md. : 1950). | 2014 Oct 1; | 3683-92 | 25187657 |
| Role of white adipose lipolysis in the development of NASH induced by methionine- and choline-deficient diet. | Tanaka, Naoki; Takahashi, Shogo; Fang, Zhong-Ze; Matsubara, Tsutomu; Krausz, Kristopher W; Qu, Aijuan; Gonzalez, Frank J | Biochimica et biophysica acta. | 2014 Nov; | 25178843 | |
| Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma. | Lee, Do Yup; Kind, Tobias; Yoon, Young-Ran; Fiehn, Oliver; Liu, Kwang-Hyeon | Analytical and bioanalytical chemistry. | 2014 Nov; | 7275-86 | 25171832 |
| Lipoxin generation is related to soluble epoxide hydrolase activity in severe asthma. | Ono, Emiko; Dutile, Stefanie; Kazani, Shamsah; Wechsler, Michael E; Yang, Jun; Hammock, Bruce D; Douda, David Nobuhiro; Tabet, Yacine; Khaddaj-Mallat, Rayan; Sirois, Marco; Sirois, Chantal; Rizcallah, Edmond; Rousseau, Eric; Martin, Richard; Sutherland, E Rand; Castro, Mario; Jarjour, Nizar N; Israel, Elliot; Levy, Bruce D; National Heart, Lung, and Blood Institute's Asthma Clinical Research Network | American journal of respiratory and critical care medicine. | 2014 Oct 15; | 886-97 | 25162465 |
| Credentialing features: a platform to benchmark and optimize untargeted metabolomic methods. | Mahieu, Nathaniel Guy; Huang, Xiaojing; Chen, Ying-Jr; Patti, Gary J | Analytical chemistry. | 2014 Oct 7; | 9583-9 | 25160088 |
| Microbial Determinants of Biochemical Individuality and Their Impact on Toxicology and Pharmacology. | Patterson, Andrew D; Turnbaugh, Peter J | Cell metabolism | 2014 Aug 20 | NULL | 25156450 |
| Glutamate enrichment as new diagnostic opportunity in breast cancer. | Budczies, Jan; Pfitzner, Berit M; Gyorffy, Balazs; Winzer, Klaus-Jurgen; Radke, Cornelia; Dietel, Manfred; Fiehn, Oliver; Denkert, Carsten | International journal of cancer. Journal international du cancer. | 2015 Apr 1; | 1619-28 | 25155347 |
| Inflammation triggers production of dimethylsphingosine from oligodendrocytes. | Chen, Y-J; Hill, S; Huang, H; Taraboletti, A; Cho, K; Gallo, R; Manchester, M; Shriver, L P; Patti, G J | Neuroscience. | 2014 Oct 24; | 113-21 | 25151189 |
| Cardioprotection by controlling hyperamylinemia in a "humanized" diabetic rat model. | Despa, Sanda; Sharma, Savita; Harris, Todd R; Dong, Hua; Li, Ning; Chiamvimonvat, Nipavan; Taegtmeyer, Heinrich; Margulies, Kenneth B; Hammock, Bruce D; Despa, Florin | Journal of the American Heart Association | 2014 Aug | NULL | 25146704 |
| Reemergence of hedgehog mediates epithelial-mesenchymal crosstalk in pulmonary fibrosis. | Hu, Biao; Liu, Jianhua; Wu, Zhe; Liu, Tianju; Ullenbruch, Matthew R; Ding, Lin; Henke, Craig A; Bitterman, Peter B; Phan, Sem H | American journal of respiratory cell and molecular biology. | 2015 Apr; | 418-28 | 25140582 |
| ¹³C NMR metabolomics: applications at natural abundance. | Clendinen, Chaevien S; Lee-McMullen, Brittany; Williams, Caroline M; Stupp, Gregory S; Vandenborne, Krista; Hahn, Daniel A; Walter, Glenn A; Edison, Arthur S | Analytical chemistry. | 2014 Sep 16; | 9242-50 | 25140385 |
| Development and in silico evaluation of large-scale metabolite identification methods using functional group detection for metabolomics. | Mitchell, Joshua M; Fan, Teresa W-M; Lane, Andrew N; Moseley, Hunter N B | Frontiers in genetics. | 2014; | 237 | 25120557 |
| Catecholamine-resistant hypotension and myocardial performance following patent ductus arteriosus ligation. | Noori, S; McNamara, P; Jain, A; Lavoie, P M; Wickremasinghe, A; Merritt, T A; Solomon, T; Sekar, K; Attridge, J T; Swanson, J R; Gillam-Krakauer, M; Reese, J; Poindexter, B B; Brook, M; Auchus, R J; Clyman, R I; PDA Ligation/Hypotension Trial Investigators | Journal of perinatology : official journal of the California Perinatal Association. | 2015 Feb; | 123-7 | 25118721 |
| Structural analysis of N- and O-glycans using ZIC-HILIC/dialysis coupled to NMR detection. | Qu, Yi; Feng, Ju; Deng, Shuang; Cao, Li; Zhang, Qibin; Zhao, Rui; Zhang, Zhaorui; Jiang, Yuxuan; Zink, Erika M; Baker, Scott E; Lipton, Mary S; Pasa-Tolic, Ljiljana; Hu, Jian Zhi; Wu, Si | Fungal genetics and biology : FG & B. | 2014 Nov; | 207-15 | 25117693 |
| Frataxin deficiency increases cyclooxygenase 2 and prostaglandins in cell and animal models of Friedreich's ataxia. | Hayashi, Genki; Shen, Yan; Pedersen, Theresa L; Newman, John W; Pook, Mark; Cortopassi, Gino | Human molecular genetics. | 2014 Dec 20; | 6838-47 | 25104852 |
| Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry. | Crowell, Kevin L; Baker, Erin S; Payne, Samuel H; Ibrahim, Yehia M; Monroe, Matthew E; Slysz, Gordon W; LaMarche, Brian L; Petyuk, Vladislav A; Piehowski, Paul D; Danielson 3rd, William F; Anderson, Gordon A; Smith, Richard D | International journal of mass spectrometry. | 2013 Nov 15; | 312-317 | 25089116 |
| PVP formulated fullerene (C60) increases Rho-kinase dependent vascular tissue contractility in pregnant Sprague Dawley rats. | Vidanapathirana, Achini K; Thompson, Leslie C; Mann, Erin E; Odom, Jillian T; Holland, Nathan A; Sumner, Susan J; Han, Li; Lewin, Anita H; Fennell, Timothy R; Brown, Jared M; Wingard, Christopher J | Reproductive toxicology (Elmsford, N.Y.). | 2014 Nov; | 86-100 | 25088243 |
| Perinatal exposure of mice to the pesticide DDT impairs energy expenditure and metabolism in adult female offspring. | La Merrill, Michele; Karey, Emma; Moshier, Erin; Lindtner, Claudia; La Frano, Michael R; Newman, John W; Buettner, Christoph | PloS one. | 2014; | e103337 | 25076055 |
| Effects of delayed gastric emptying on postprandial glucose kinetics, insulin sensitivity, and ?-cell function. | Hinshaw, Ling; Schiavon, Michele; Mallad, Ashwini; Man, Chiara Dalla; Basu, Rita; Bharucha, Adil E; Cobelli, Claudio; Carter, Rickey E; Basu, Ananda; Kudva, Yogish C | American journal of physiology. Endocrinology and metabolism. | 2014 Sep 15; | E494-502 | 25074985 |
| Proteasome function is required for platelet production. | Shi, Dallas S; Smith, Matthew C P; Campbell, Robert A; Zimmerman, Patrick W; Franks, Zechariah B; Kraemer, Bjorn F; Machlus, Kellie R; Ling, Jing; Kamba, Patrick; Schwertz, Hansjorg; Rowley, Jesse W; Miles, Rodney R; Liu, Zhi-Jian; Sola-Visner, Martha; Italiano Jr, Joseph E; Christensen, Hilary; Kahr, Walter H A; Li, Dean Y; Weyrich, Andrew S | The Journal of clinical investigation. | 2014 Sep; | 3757-66 | 25061876 |
| Thermally-Induced Substrate Release Via Intramolecular Cyclizations of Amino Esters and Amino Carbonates. | Knipp, Ralph J; Estrada, Rosendo; Sethu, Palaniappan; Nantz, Michael H | Tetrahedron | 2014 May 1 | 3422-3429 | 25061237 |
| Tracing flavonoid degradation in grapes by MS filtering with stable isotopes. | Chassy, Alexander W; Bueschl, Christoph; Lee, Hyeyoung; Lerno, Larry; Oberholster, Anita; Barile, Daniela; Schuhmacher, Rainer; Waterhouse, Andrew L | Food chemistry | 2015 Jan 1 | 448-55 | 25053079 |
| The effect of vagal nerve blockade using electrical impulses on glucose metabolism in nondiabetic subjects. | Sathananthan, Matheni; Ikramuddin, Sayeed; Swain, James M; Shah, Meera; Piccinini, Francesca; Dalla Man, Chiara; Cobelli, Claudio; Rizza, Robert A; Camilleri, Michael; Vella, Adrian | Diabetes, metabolic syndrome and obesity : targets and therapy. | 2014; | 305-12 | 25050073 |
| Fasting increases human skeletal muscle net phenylalanine release and this is associated with decreased mTOR signaling. | Vendelbo, Mikkel Holm; Moller, Andreas Buch; Christensen, Britt; Nellemann, Birgitte; Clasen, Berthil Frederik Forrest; Nair, K Sreekumaran; Jorgensen, Jens Otto Lunde; Jessen, Niels; Moller, Niels | PloS one. | 2014; | e102031 | 25020061 |
| Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine. | Zallot, Remi; Yazdani, Mohammad; Goyer, Aymeric; Ziemak, Michael J; Guan, Jiahn-Chou; McCarty, Donald R; de Crecy-Lagard, Valerie; Gerdes, Svetlana; Garrett, Timothy J; Benach, Jordi; Hunt, John F; Shintani, David K; Hanson, Andrew D | The Biochemical journal. | 2014 Oct 1; | 145-55 | 25014715 |
| Differential incorporation of glucose into biomass during Warburg metabolism. | Chen, Ying-Jr; Huang, Xiaojing; Mahieu, Nathaniel G; Cho, Kevin; Schaefer, Jacob; Patti, Gary J | Biochemistry. | 2014 Jul 29; | 4755-7 | 25010499 |
| Enhanced detection and identification in metabolomics by use of LC-MS/MS untargeted analysis in combination with gas-phase fractionation. | Calder�n-Santiago, M�nica; Priego-Capote, Feliciano; Luque de Castro, Mar�a D | Analytical chemistry | 2014 Aug 5 | 24992377 | |
| Citrulline stimulates muscle protein synthesis in the post-absorptive state in healthy people fed a low-protein diet - A pilot study. | Jourdan, Marion; Nair, K Sreekumaran; Carter, Rickey E; Schimke, Jill; Ford, G Charles; Marc, Julie; Aussel, Christian; Cynober, Luc | Clinical nutrition (Edinburgh, Scotland). | 2015 Jun; | 449-56 | 24972455 |
| Studies of Secondary Melanoma on C57BL/6J Mouse Liver Using 1H NMR Metabolomics. | Feng, Ju; Isern, Nancy G; Burton, Sarah D; Hu, Jian Zhi | Metabolites. | 2013; | 1011-35 | 24958263 |
| Tryptophan catabolism restricts IFN-ýý-expressing neutrophils and Clostridium difficile immunopathology. | El-Zaatari, Mohamad; Chang, Yu-Ming; Zhang, Min; Franz, Matthew; Shreiner, Andrew; McDermott, Andrew J; van der Sluijs, Koenraad F; Lutter, Rene; Grasberger, Helmut; Kamada, Nobuhiko; Young, Vincent B; Huffnagle, Gary B; Kao, John Y | Journal of immunology (Baltimore, Md. : 1950) | 2014 Jul 15 | 807-16 | 24935925 |
| Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses. | Gowda, Harsha; Ivanisevic, Julijana; Johnson, Caroline H; Kurczy, Michael E; Benton, H Paul; Rinehart, Duane; Nguyen, Thomas; Ray, Jayashree; Kuehl, Jennifer; Arevalo, Bernardo; Westenskow, Peter D; Wang, Junhua; Arkin, Adam P; Deutschbauer, Adam M; Patti, Gary J; Siuzdak, Gary | Analytical chemistry. | 2014 Jul 15; | 6931-9 | 24934772 |
| Soluble epoxide hydrolase inhibitor attenuates inflammation and airway hyperresponsiveness in mice. | Yang, Jun; Bratt, Jennifer; Franzi, Lisa; Liu, Jun-Yan; Zhang, Guodong; Zeki, Amir A; Vogel, Christoph F A; Williams, Keisha; Dong, Hua; Lin, Yanping; Hwang, Sung Hee; Kenyon, Nicholas J; Hammock, Bruce D | American journal of respiratory cell and molecular biology. | 2015 Jan; | 46-55 | 24922186 |
| Analysis of Human Serum and Whole Blood for Mineral Content by ICP-MS and ICP-OES: Development of a Mineralomics Method. | Harrington, James M; Young, Daniel J; Essader, Amal S; Sumner, Susan J; Levine, Keith E | Biological trace element research | 2014 Jun 11 | NULL | 24917052 |
| Metabolomic data streaming for biology-dependent data acquisition. | Rinehart, Duane; Johnson, Caroline H; Nguyen, Thomas; Ivanisevic, Julijana; Benton, H Paul; Lloyd, Jessica; Arkin, Adam P; Deutschbauer, Adam M; Patti, Gary J; Siuzdak, Gary | Nature biotechnology | 2014 Jun | 524-7 | 24911492 |
| A tour through the transcriptional landscape of platelets. | Schubert, Sebastian; Weyrich, Andrew S; Rowley, Jesse W | Blood | 2014 Jul 24 | 493-502 | 24904119 |
| Comparison of the effects of long-chain omega-3 fatty acid supplementation on plasma levels of free and esterified oxylipins. | Schebb, Nils Helge; Ostermann, Annika I; Yang, Jun; Hammock, Bruce D; Hahn, Andreas; Schuchardt, Jan Philipp | Prostaglandins & other lipid mediators | 2014 May 29 | NULL | 24880049 |
| Profiling thiol metabolites and quantification of cellular glutathione using FT-ICR-MS spectrometry. | Gori, Sadakatali S; Lorkiewicz, Pawel; Ehringer, Daniel S; Belshoff, Alex C; Higashi, Richard M; Fan, Teresa W-M; Nantz, Michael H | Analytical and bioanalytical chemistry | 2014 Jul | 4371-9 | 24858467 |
| Microbiota, oral microbiome, and pancreatic cancer. | Michaud, Dominique S; Izard, Jacques | Cancer journal (Sudbury, Mass.) | 2014 May-Jun | 203-6 | 24855008 |
| A systems biology approach utilizing a mouse diversity panel identifies genetic differences influencing isoniazid-induced microvesicular steatosis. | Church, Rachel J; Wu, Hong; Mosedale, Merrie; Sumner, Susan J; Pathmasiri, Wimal; Kurtz, Catherine L; Pletcher, Mathew T; Eaddy, John S; Pandher, Karamjeet; Singer, Monica; Batheja, Ameesha; Watkins, Paul B; Adkins, Karissa; Harrill, Alison H | Toxicological sciences : an official journal of the Society of Toxicology | 2014 Aug 1 | 481-92 | 24848797 |
| Protection from hypertension in mice by the Mediterranean diet is mediated by nitro fatty acid inhibition of soluble epoxide hydrolase. | Charles, Rebecca L; Rudyk, Olena; Prysyazhna, Oleksandra; Kamynina, Alisa; Yang, Jun; Morisseau, Christophe; Hammock, Bruce D; Freeman, Bruce A; Eaton, Philip | Proceedings of the National Academy of Sciences of the United States of America | 2014 Jun 3 | 8167-72 | 24843165 |
| Age- and diet-associated metabolome remodeling characterizes the aging process driven by damage accumulation. | Avanesov, Andrei S; Ma, Siming; Pierce, Kerry A; Yim, Sun Hee; Lee, Byung Cheon; Clish, Clary B; Gladyshev, Vadim N | eLife | 2014 | e02077 | 24843015 |
| Neutrophil extracellular trap-derived enzymes oxidize high-density lipoprotein: An additional proatherogenic mechanism in systemic lupus erythematosus. | Smith, Carolyne K; Vivekanandan-Giri, Anuradha; Tang, Chongren; Knight, Jason S; Mathew, Anna; Padilla, Robin L; Gillespie, Brenda W; Carmona-Rivera, Carmelo; Liu, Xiaodan; Subramanian, Venkataraman; Hasni, Sarfaraz; Thompson, Paul R; Heinecke, Jay W; Sar | Arthritis & rheumatology (Hoboken, N.J.) | 2014 May 16 | NULL | 24838349 |
| Targeted metabolomics and mathematical modeling demonstrate that vitamin B-6 restriction alters one-carbon metabolism in cultured HepG2 cells. | da Silva, Vanessa R; Ralat, Maria A; Quinlivan, Eoin P; DeRatt, Barbara N; Garrett, Timothy J; Chi, Yueh-Yun; Frederik Nijhout, H; Reed, Michael C; Gregory 3rd, Jesse F | American journal of physiology. Endocrinology and metabolism. | 2014 Jul 1; | 24824655 | |
| After the feature presentation: technologies bridging untargeted metabolomics and biology. | Cho, Kevin; Mahieu, Nathaniel G; Johnson, Stephen L; Patti, Gary J | Current opinion in biotechnology | 2014 May 5 | 143-148 | 24816495 |
| Protein intake and exercise for optimal muscle function with aging: recommendations from the ESPEN Expert Group. | Deutz, Nicolaas E P; Bauer, Jurgen M; Barazzoni, Rocco; Biolo, Gianni; Boirie, Yves; Bosy-Westphal, Anja; Cederholm, Tommy; Cruz-Jentoft, Alfonso; Krznaric, Zeljko; Nair, K Sreekumaran; Singer, Pierre; Teta, Daniel; Tipton, Kevin; Calder, Philip C | Clinical nutrition (Edinburgh, Scotland). | 2014 Dec; | 929-36 | 24814383 |
| Quantitative NMR Metabolite Profiling of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus Discriminates between Biofilm and Planktonic Phenotypes. | Ammons, Mary Cloud B; Tripet, Brian P; Carlson, Ross P; Kirker, Kelly R; Gross, Michael A; Stanisich, Jessica J; Copie, Valerie | Journal of proteome research | 2014 Jun 6 | 2973-85 | 24809402 |
| Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. | Kol, Amir; Foutouhi, Soraya; Walker, Naomi J; Kong, Nguyet T; Weimer, Bart C; Borjesson, Dori L | Stem cells and development. | 2014 Aug 15; | 1831-43 | 24803072 |
| Detecting and Removing Data Artifacts in Hadamard Transform Ion Mobility-Mass Spectrometry Measurements. | Prost, Spencer A; Crowell, Kevin L; Baker, Erin S; Ibrahim, Yehia M; Clowers, Brian H; Monroe, Matthew E; Anderson, Gordon A; Smith, Richard D; Payne, Samuel H | Journal of the American Society for Mass Spectrometry | 2014 May 6 | NULL | 24796262 |
| Improving Ion Mobility Measurement Sensitivity by Utilizing Helium in an Ion Funnel Trap. | Ibrahim, Yehia M; Garimella, Sandilya V B; Tolmachev, Aleksey V; Baker, Erin S; Smith, Richard D | Analytical chemistry | 2014 May 13 | NULL | 24786390 |
| Customized Metabolomics Database for the Analysis of NMR (1)H-(1)H TOCSY and (13)C-(1)H HSQC-TOCSY Spectra of Complex Mixtures. | Bingol, Kerem; Bruschweiler-Li, Lei; Li, Da-Wei; Bruschweiler, Rafael | Analytical chemistry | 2014 May 20 | NULL | 24773139 |
| A mitochondrial RNAi screen defines cellular bioenergetic determinants and identifies an adenylate kinase as a key regulator of ATP levels. | Lanning, Nathan J; Looyenga, Brendan D; Kauffman, Audra L; Niemi, Natalie M; Sudderth, Jessica; DeBerardinis, Ralph J; MacKeigan, Jeffrey P | Cell reports | 2014 May 8 | 907-17 | 24767988 |
| mTORC1-independent reduction of retinal protein synthesis in type 1 diabetes. | Fort, Patrice E; Losiewicz, Mandy K; Pennathur, Subramaniam; Jefferson, Leonard S; Kimball, Scot R; Abcouwer, Steven F; Gardner, Thomas W | Diabetes. | 2014 Sep; | 3077-90 | 24740573 |
| Noninvasive urinary metabolomic profiling identifies diagnostic and prognostic markers in lung cancer. | Mathe, Ewy A; Patterson, Andrew D; Haznadar, Majda; Manna, Soumen K; Krausz, Kristopher W; Bowman, Elise D; Shields, Peter G; Idle, Jeffrey R; Smith, Philip B; Anami, Katsuhiro; Kazandjian, Dickran G; Hatzakis, Emmanuel; Gonzalez, Frank J; Harris, Curtis | Cancer research | 2014 Jun 15 | 3259-70 | 24736543 |
| Targeting lactate dehydrogenase--a inhibits tumorigenesis and tumor progression in mouse models of lung cancer and impacts tumor-initiating cells. | Xie, Han; Hanai, Jun-Ichi; Ren, Jian-Guo; Kats, Lev; Burgess, Kerri; Bhargava, Parul; Signoretti, Sabina; Billiard, Julia; Duffy, Kevin J; Grant, Aaron; Wang, Xiaoen; Lorkiewicz, Pawel K; Schatzman, Sabrina; Bousamra 2nd, Michael; Lane, Andrew N; Higashi, | Cell metabolism | 2014 May 6 | 795-809 | 24726384 |
| Testing the role of myeloid cell glucose flux in inflammation and atherosclerosis. | Nishizawa, Tomohiro; Kanter, Jenny E; Kramer, Farah; Barnhart, Shelley; Shen, Xia; Vivekanandan-Giri, Anuradha; Wall, Valerie Z; Kowitz, Jason; Devaraj, Sridevi; O'Brien, Kevin D; Pennathur, Subramaniam; Tang, Jingjing; Miyaoka, Robert S; Raines, Elaine W | Cell reports | 2014 Apr 24 | 356-65 | 24726364 |
| MR microscopy of formalin fixed paraffin embedded histology specimens. | Macura, Slobodan; Mishra, Prasanna K; Gamez, Jeffrey D; Pirko, Istvan | Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine | 2014 Jun | 1989-94 | 24715442 |
| MetDisease--connecting metabolites to diseases via literature. | Duren, William; Weymouth, Terry; Hull, Tim; Omenn, Gilbert S; Athey, Brian; Burant, Charles; Karnovsky, Alla | Bioinformatics (Oxford, England) | 2014 Apr 23 | NULL | 24713438 |
| LC-MS-based metabolomics: an update. | Fang, Zhong-Ze; Gonzalez, Frank J | Archives of toxicology. | 2014 Aug; | 1491-502 | 24710571 |
| Role in tumor growth of a glycogen debranching enzyme lost in glycogen storage disease. | Guin, Sunny; Pollard, Courtney; Ru, Yuanbin; Ritterson Lew, Carolyn; Duex, Jason E; Dancik, Garrett; Owens, Charles; Spencer, Andrea; Knight, Scott; Holemon, Heather; Gupta, Sounak; Hansel, Donna; Hellerstein, Marc; Lorkiewicz, Pawel; Lane, Andrew N; Fan, | Journal of the National Cancer Institute | 2014 May | NULL | 24700805 |
| An Omega-3 Epoxide of Docosahexaenoic Acid Lowers Blood Pressure in Angiotensin-II Dependent Hypertension. | Ulu, Arzu; Stephen Lee, Kin Sing; Miyabe, Christina; Yang, Jun; Hammock, Bruce G; Dong, Hua; Hammock, Bruce D | Journal of cardiovascular pharmacology | 2014 Mar 31 | NULL | 24691274 |
| Platelet lipidomics: modern day perspective on lipid discovery and characterization in platelets. | O'Donnell, Valerie B; Murphy, Robert C; Watson, Steve P | Circulation research | 2014 Mar 28 | 1185-203 | 24677238 |
| Increased glucose metabolism and glycerolipid formation by fatty acids and GPR40 receptor signaling underlies the fatty acid potentiation of insulin secretion. | El-Azzouny, Mahmoud; Evans, Charles R; Treutelaar, Mary K; Kennedy, Robert T; Burant, Charles F | The Journal of biological chemistry | 2014 May 9 | 13575-88 | 24675078 |
| Continuous 24-Hour Leptin, Proopiomelanocortin and Amino Acid Measurements in Human Cerebrospinal Fluid: Correlations with Plasma Leptin, Soluble Leptin Receptor and Amino Acid Levels. | Wardlaw, Sharon L; Burant, Charles F; Klein, Samuel; Meece, Kana; White, Anne; Kasten, Tom; Lucey, Brendan P; Bateman, Randall J | The Journal of clinical endocrinology and metabolism | 2014 Mar 26 | jc20134087 | 24670082 |
| Increase of EPA-derived hydroxy, epoxy and dihydroxy fatty acid levels in human plasma after a single dose of long-chain omega-3 PUFA. | Schuchardt, Jan Philipp; Schneider, Inga; Willenberg, Ina; Yang, Jun; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils Helge | Prostaglandins & other lipid mediators | 2014 Jun | 23-31 | 24667634 |
| Modular organization of cardiac energy metabolism: energy conversion, transfer and feedback regulation. | Guzun, R; Kaambre, T; Bagur, R; Grichine, A; Usson, Y; Varikmaa, M; Anmann, T; Tepp, K; Timohhina, N; Shevchuk, I; Chekulayev, V; Boucher, F; Dos Santos, P; Schlattner, U; Wallimann, T; Kuznetsov, A V; Dzeja, P; Aliev, M; Saks, V | Acta physiologica (Oxford, England) | 2014 Mar 26 | NULL | 24666671 |
| Leucine modulates dynamic phosphorylation events in insulin signaling pathway and enhances insulin-dependent glycogen synthesis in human skeletal muscle cells. | Di Camillo, Barbara; Eduati, Federica; Nair, Sreekumaran K; Avogaro, Angelo; Toffolo, Gianna M | BMC cell biology. | 2014; | 9 | 24646332 |
| Hypotension following patent ductus arteriosus ligation: the role of adrenal hormones. | Clyman, Ronald I; Wickremasinghe, Andrea; Merritt, T Allen; Solomon, Tabitha; McNamara, Patrick; Jain, Amish; Singh, Jaideep; Chu, Alison; Noori, Shahab; Sekar, Krishnamurthy; Lavoie, Pascal M; Attridge, Joshua T; Swanson, Jonathan R; Gillam-Krakauer, Mar | The Journal of pediatrics | 2014 Jun | 1449-55.e1 | 24636853 |
| Accumulation of high-value lipids in single-cell microorganisms: a mechanistic approach and future perspectives. | Garay, Luis A; Boundy-Mills, Kyria L; German, J Bruce | Journal of agricultural and food chemistry | 2014 Apr 2 | 2709-27 | 24628496 |
| Towards metabolic biomarkers of insulin resistance and type 2 diabetes: progress from the metabolome. | Roberts, Lee D; Koulman, Albert; Griffin, Julian L | The lancet. Diabetes & endocrinology | 2014 Jan | 65-75 | 24622670 |
| Tracing phenolic metabolism in Vitis vinifera berries with 13C6-phenylalanine: implication of an unidentified intermediate reservoir. | Chassy, Alexander W; Adams, Douglas O; Waterhouse, Andrew L | Journal of agricultural and food chemistry | 2014 Mar 19 | 2321-6 | 24611798 |
| Alteration of the murine gastrointestinal microbiota by tigecycline leads to increased susceptibility to Clostridium difficile infection. | Bassis, Christine M; Theriot, Casey M; Young, Vincent B | Antimicrobial agents and chemotherapy | 2014 May | 2767-74 | 24590475 |
| Relationship of muscle sympathetic nerve activity to insulin sensitivity. | Curry, Timothy B; Hines, Casey N; Barnes, Jill N; Somaraju, Madhuri; Basu, Rita; Miles, John M; Joyner, Michael J; Charkoudian, Nisha | Clinical autonomic research : official journal of the Clinical Autonomic Research Society. | 2014 Apr; | 77-85 | 24577625 |
| Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdom interactions of Pseudomonas aeruginosa. | Phelan, Vanessa V; Moree, Wilna J; Aguilar, Julieta; Cornett, Dale S; Koumoutsi, Alexandra; Noble, Suzanne M; Pogliano, Kit; Guerrero, Carlos A; Dorrestein, Pieter C | Journal of bacteriology | 2014 May | 1683-93 | 24532776 |
| A multimodal intervention for patients with secondary progressive multiple sclerosis: feasibility and effect on fatigue. | Bisht, Babita; Darling, Warren G; Grossmann, Ruth E; Shivapour, E Torage; Lutgendorf, Susan K; Snetselaar, Linda G; Hall, Michael J; Zimmerman, M Bridget; Wahls, Terry L | Journal of alternative and complementary medicine (New York, N.Y.). | 2014 May; | 347-55 | 24476345 |
| Administration of saccharin to neonatal mice influences body composition of adult males and reduces body weight of females. | Parlee, Sebastian D; Simon, Becky R; Scheller, Erica L; Alejandro, Emilyn U; Learman, Brian S; Krishnan, Venkatesh; Bernal-Mizrachi, Ernesto; MacDougald, Ormond A | Endocrinology | 2014 Apr | 1313-26 | 24456165 |
| Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection. | Theriot, Casey M; Koenigsknecht, Mark J; Carlson Jr, Paul E; Hatton, Gabrielle E; Nelson, Adam M; Li, Bo; Huffnagle, Gary B; Z Li, Jun; Young, Vincent B | Nature communications | 2014 | 3114 | 24445449 |
| Cýýýýýý exposure augments cardiac ischemia/reperfusion injury and coronary artery contraction in Sprague Dawley rats. | Thompson, Leslie C; Urankar, Rakhee N; Holland, Nathan A; Vidanapathirana, Achini K; Pitzer, Joshua E; Han, Li; Sumner, Susan J; Lewin, Anita H; Fennell, Timothy R; Lust, Robert M; Brown, Jared M; Wingard, Christopher J | Toxicological sciences : an official journal of the Society of Toxicology. | 2014 Apr; | 365-78 | 24431213 |
| Uremic solutes and risk of end-stage renal disease in type 2 diabetes: metabolomic study. | Niewczas, Monika A; Sirich, Tammy L; Mathew, Anna V; Skupien, Jan; Mohney, Robert P; Warram, James H; Smiles, Adam; Huang, Xiaoping; Walker, Walker; Byun, Jaeman; Karoly, Edward D; Kensicki, Elizabeth M; Berry, Gerard T; Bonventre, Joseph V; Pennathur, Su | Kidney international | 2014 Jan 15 | NULL | 24429397 |
| Improved metabolic health alters host metabolism in parallel with changes in systemic xeno-metabolites of gut origin. | Campbell, Caitlin; Grapov, Dmitry; Fiehn, Oliver; Chandler, Carol J; Burnett, Dustin J; Souza, Elaine C; Casazza, Gretchen A; Gustafson, Mary B; Keim, Nancy L; Newman, John W; Hunter, Gary R; Fernandez, Jose R; Garvey, W Timothy; Harper, Mary-Ellen; Hoppe | PloS one | 2014 | e84260 | 24416208 |
| Modulation of blood oxylipin levels by long-chain omega-3 fatty acid supplementation in hyper- and normolipidemic men. | Schuchardt, Jan Philipp; Schmidt, Simone; Kressel, Gaby; Willenberg, Ina; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils Helge | Prostaglandins, leukotrienes, and essential fatty acids | 2014 Feb-Mar | 27-37 | 24411718 |
| A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets. | Carreer, William J; Flight, Robert M; Moseley, Hunter N B | Metabolites | 2013 Sep 25 | NULL | 24404440 |
| Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry. | Baker, Erin Shammel; Burnum-Johnson, Kristin E; Jacobs, Jon M; Diamond, Deborah L; Brown, Roslyn N; Ibrahim, Yehia M; Orton, Daniel J; Piehowski, Paul D; Purdy, David E; Moore, Ronald J; Danielson 3rd, William F; Monroe, Matthew E; Crowell, Kevin L; Slysz | Molecular & cellular proteomics : MCP | 2014 Apr | 1119-27 | 24403597 |
| Establishing 3-nitrotyrosine as a biomarker for the vasculopathy of Fabry disease. | Shu, Liming; Vivekanandan-Giri, Anuradha; Pennathur, Subramaniam; Smid, Bouwien E; Aerts, Johannes M F G; Hollak, Carla E M; Shayman, James A | Kidney international. | 2014 Jul; | 58-66 | 24402087 |
| X13CMS: global tracking of isotopic labels in untargeted metabolomics. | Huang, Xiaojing; Chen, Ying-Jr; Cho, Kevin; Nikolskiy, Igor; Crawford, Peter A; Patti, Gary J | Analytical chemistry | 2014 Feb 4 | 1632-9 | 24397582 |
| Key role of microRNA in the regulation of granulocyte macrophage colony-stimulating factor expression in murine alveolar epithelial cells during oxidative stress. | Sturrock, Anne; Mir-Kasimov, Mustafa; Baker, Jessica; Rowley, Jesse; Paine 3rd, Robert | The Journal of biological chemistry | 2014 Feb 14 | 4095-105 | 24371146 |
| Microbial and metabolic interactions between the gastrointestinal tract and Clostridium difficile infection. | Theriot, Casey M; Young, Vincent B | Gut microbes. | 2014 Jan-Feb; | 86-95 | 24335555 |
| Soluble epoxide hydrolase deficiency inhibits dextran sulfate sodium-induced colitis and carcinogenesis in mice. | Zhang, Wanying; Li, Haonan; Dong, Hua; Liao, Jie; Hammock, Bruce D; Yang, Guang-Yu | Anticancer research | 2013 Dec | 5261-71 | 24324059 |
| Untargeted LC-MS metabolomics of bronchoalveolar lavage fluid differentiates acute respiratory distress syndrome from health. | Evans, Charles R; Karnovsky, Alla; Kovach, Melissa A; Standiford, Theodore J; Burant, Charles F; Stringer, Kathleen A | Journal of proteome research | 2014 Feb 7 | 640-9 | 24289193 |
| Monitoring metabolic responses to chemotherapy in single cells and tumors using nanostructure-initiator mass spectrometry (NIMS) imaging. | O'Brien, Peter J; Lee, Michelle; Spilker, Mary E; Zhang, Cathy C; Yan, Zhengming; Nichols, Timothy C; Li, Wenlin; Johnson, Caroline H; Patti, Gary J; Siuzdak, Gary | Cancer & metabolism | 2013 | 4 | 24280026 |
| Isotopic Ratio Outlier Analysis Global Metabolomics of Caenorhabditis elegans. | Stupp, Gregory S; Clendinen, Chaevien S; Ajredini, Ramadan; Szewc, Mark A; Garrett, Timothy; Menger, Robert F; Yost, Richard A; Beecher, Chris; Edison, Arthur S | Analytical chemistry | 2013 Dec 17 | 11858-65 | 24274725 |
| Treatment of mice with 2,3,7,8-Tetrachlorodibenzo-p-dioxin markedly increases the levels of a number of cytochrome P450 metabolites of omega-3 polyunsaturated fatty acids in the liver and lung. | Yang, Jun; Solaimani, Parrisa; Dong, Hua; Hammock, Bruce; Hankinson, Oliver | The Journal of toxicological sciences | 2013 | 833-6 | 24213002 |
| Individual variation in lipidomic profiles of healthy subjects in response to omega-3 Fatty acids. | Nording, Malin L; Yang, Jun; Georgi, Katrin; Hegedus Karbowski, Christine; German, J Bruce; Weiss, Robert H; Hogg, Ronald J; Trygg, Johan; Hammock, Bruce D; Zivkovic, Angela M | PloS one | 2013 | e76575 | 24204640 |
| A Metabolomics Investigation of Non-genotoxic Carcinogenicity in the Rat. | Ament, Zsuzsanna; Waterman, Claire L; West, James A; Waterfield, Catherine; Currie, Richard A; Wright, Jayne; Griffin, Julian L | Journal of proteome research | 2013 Dec 6 | 5775-90 | 24161236 |
| Dietary long-chain omega-3 fatty acids do not diminish eosinophilic pulmonary inflammation in mice. | Schuster, Gertrud U; Bratt, Jennifer M; Jiang, Xiaowen; Pedersen, Theresa L; Grapov, Dmitry; Adkins, Yuriko; Kelley, Darshan S; Newman, John W; Kenyon, Nicholas J; Stephensen, Charles B | American journal of respiratory cell and molecular biology | 2014 Mar | 626-36 | 24134486 |
| Tilapia (Oreochromis mossambicus) brain cells respond to hyperosmotic challenge by inducing myo-inositol biosynthesis. | Gardell, Alison M; Yang, Jun; Sacchi, Romina; Fangue, Nann A; Hammock, Bruce D; Kultz, Dietmar | The Journal of experimental biology | 2013 Dec 15 | 4615-25 | 24072790 |
| Artificial sweeteners stimulate adipogenesis and suppress lipolysis independently of sweet taste receptors. | Simon, Becky R; Parlee, Sebastian D; Learman, Brian S; Mori, Hiroyuki; Scheller, Erica L; Cawthorn, William P; Ning, Xiaomin; Gallagher, Katherine; Tyrberg, Björn; Assadi-Porter, Fariba M; Evans, Charles R; MacDougald, Ormond A | The Journal of biological chemistry. | 2013 Nov 8; | 24068707 | |
| Anti-inflammatory properties of prostaglandin E2: deletion of microsomal prostaglandin E synthase-1 exacerbates non-immune inflammatory arthritis in mice. | Frolov, Andrey; Yang, Lihua; Dong, Hua; Hammock, Bruce D; Crofford, Leslie J | Prostaglandins, leukotrienes, and essential fatty acids | 2013 Oct | 351-8 | 24055573 |
| Mitochondrial protein acetylation as a cell-intrinsic, evolutionary driver of fat storage: chemical and metabolic logic of acetyl-lysine modifications. | Ghanta, Sirisha; Grossmann, Ruth E; Brenner, Charles | Critical reviews in biochemistry and molecular biology | 2013 Nov-Dec | 561-74 | 24050258 |
| Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus. | Smilowitz, Jennifer T; Totten, Sarah M; Huang, Jincui; Grapov, Dmitry; Durham, Holiday A; Lammi-Keefe, Carol J; Lebrilla, Carlito; German, J Bruce | The Journal of nutrition | 2013 Dec | 1906-12 | 24047700 |
| LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. | Crowell, Kevin L; Slysz, Gordon W; Baker, Erin S; LaMarche, Brian L; Monroe, Matthew E; Ibrahim, Yehia M; Payne, Samuel H; Anderson, Gordon A; Smith, Richard D | Bioinformatics (Oxford, England) | 2013 Nov 1 | 2804-5 | 24008421 |
| Long-Chain Acyl Coenzyme A Synthetase 1 Overexpression in Primary Cultured Schwann Cells Prevents Long Chain Fatty Acid-Induced Oxidative Stress and Mitochondrial Dysfunction. | Hinder, Lucy M; Figueroa-Romero, Claudia; Pacut, Crystal; Hong, Yu; Vivekanandan-Giri, Anuradha; Pennathur, Subramaniam; Feldman, Eva L | Antioxidants & redox signaling | 2013 Oct 5 | NULL | 23991914 |
| Preparation of 20-HETE using multifunctional enzyme type 2-negative Starmerella bombicola. | Van Bogaert, Inge; Zhang, Guodong; Yang, Jun; Liu, Jun-Yan; Ye, Yonghao; Soetaert, Wim; Hammock, Bruce D | Journal of lipid research | 2013 Nov | 3215-9 | 23966667 |
| Metabolite profile analysis reveals functional effects of 28-day vitamin B-6 restriction on one-carbon metabolism and tryptophan catabolic pathways in healthy men and women. | da Silva, Vanessa R; Rios-Avila, Luisa; Lamers, Yvonne; Ralat, Maria A; Midttun, Øivind; Quinlivan, Eoin P; Garrett, Timothy J; Coats, Bonnie; Shankar, Meena N; Percival, Susan S; Chi, Yueh-Yun; Muller, Keith E; Ueland, Per Magne; Stacpoole, Peter W; Gregory 3rd, Jesse F | The Journal of nutrition. | 2013 Nov; | 23966327 | |
| Mechanism of formation of the major estradiol product ions following collisional activation of the molecular anion in a tandem quadrupole mass spectrometer. | Wooding, Kerry M; Barkley, Robert M; Hankin, Joseph A; Johnson, Christopher A; Bradford, Andrew P; Santoro, Nanette; Murphy, Robert C | Journal of the American Society for Mass Spectrometry | 2013 Oct | 1451-5 | 23955001 |
| Pharmacometabolomic signature of ataxia SCA1 mouse model and lithium effects. | Perroud, Bertrand; Jafar-Nejad, Paymaan; Wikoff, William R; Gatchel, Jennifer R; Wang, Lu; Barupal, Dinesh K; Crespo-Barreto, Juan; Fiehn, Oliver; Zoghbi, Huda Y; Kaddurah-Daouk, Rima | PloS one | 2013 | e70610 | 23936457 |
| Cortisol response to operative stress with anesthesia in healthy children. | Taylor, Lisa K; Auchus, Richard J; Baskin, Laurence S; Miller, Walter L | The Journal of clinical endocrinology and metabolism | 2013 Sep | 3687-93 | 23861461 |
| Profiling targets of the irreversible palmitoylation inhibitor 2-bromopalmitate. | Davda, Dahvid; El Azzouny, Mahmoud A; Tom, Christopher T M B; Hernandez, Jeannie L; Majmudar, Jaimeen D; Kennedy, Robert T; Martin, Brent R | ACS chemical biology | 2013 Sep 20 | 1912-7 | 23844586 |
| An untargeted metabolomic workflow to improve structural characterization of metabolites. | Nikolskiy, Igor; Mahieu, Nathaniel G; Chen, Ying-Jr; Tautenhahn, Ralf; Patti, Gary J | Analytical chemistry | 2013 Aug 20 | 7713-9 | 23829391 |
| Nutritional lipidomics: molecular metabolism, analytics, and diagnostics. | Smilowitz, Jennifer T; Zivkovic, Angela M; Wan, Yu-Jui Yvonne; Watkins, Steve M; Nording, Malin L; Hammock, Bruce D; German, J Bruce | Molecular nutrition & food research | 2013 Aug | 1319-35 | 23818328 |
| LipidBlast in silico tandem mass spectrometry database for lipid identification. | Kind, Tobias; Liu, Kwang-Hyeon; Lee, Do Yup; Defelice, Brian; Meissen, John K; Fiehn, Oliver | Nature methods | 2013 Aug | 755-8 | 23817071 |
| Niemann-pick type C2 deficiency in human fibroblasts confers robust and selective activation of prostaglandin E2 biosynthesis. | Frolov, Andrey; Dong, Hua; Jiang, Min; Yang, Lihua; Cook, Erik C; Matnani, Rahul; Hammock, Bruce D; Crofford, Leslie J | The Journal of biological chemistry | 2013 Aug 16 | 23696-703 | 23814065 |
| Integrated phosphoproteomic and metabolomic profiling reveals NPM-ALK-mediated phosphorylation of PKM2 and metabolic reprogramming in anaplastic large cell lymphoma. | McDonnell, Scott R P; Hwang, Steven R; Rolland, Delphine; Murga-Zamalloa, Carlos; Basrur, Venkatesha; Conlon, Kevin P; Fermin, Damian; Wolfe, Thomas; Raskind, Alexander; Ruan, Chunhai; Jiang, Jian-Kang; Thomas, Craig J; Hogaboam, Cory M; Burant, Charles F | Blood | 2013 Jun 27 | NULL | 23814019 |
| Coordinate expression of transcripts and proteins in platelets. | Rowley, Jesse W; Weyrich, Andrew S | Blood | 2013 Jun 27 | 5255-6 | 23813941 |
| MS/MS networking guided analysis of molecule and gene cluster families. | Nguyen, Don Duy; Wu, Cheng-Hsuan; Moree, Wilna J; Lamsa, Anne; Medema, Marnix H; Zhao, Xiling; Gavilan, Ronnie G; Aparicio, Marystella; Atencio, Librada; Jackson, Chanaye; Ballesteros, Javier; Sanchez, Joel; Watrous, Jeramie D; Phelan, Vanessa V; van de W | Proceedings of the National Academy of Sciences of the United States of America | 2013 Jul 9 | E2611-20 | 23798442 |
| Toward 'omic scale metabolite profiling: a dual separation-mass spectrometry approach for coverage of lipid and central carbon metabolism. | Ivanisevic, Julijana; Zhu, Zheng-Jiang; Plate, Lars; Tautenhahn, Ralf; Chen, Stephen; O'Brien, Peter J; Johnson, Caroline H; Marletta, Michael A; Patti, Gary J; Siuzdak, Gary | Analytical chemistry | 2013 Jul 16 | 6876-84 | 23781873 |
| HR-MAS NMR Tissue Metabolomic Signatures Cross-validated by Mass Spectrometry Distinguish Bladder Cancer from Benign Disease. | Tripathi, Pratima; Somashekar, Bagganahalli S; Ponnusamy, M; Gursky, Amy; Dailey, Stephen; Kunju, Priya; Lee, Cheryl T; Chinnaiyan, Arul M; Rajendiran, Thekkelnaycke M; Ramamoorthy, Ayyalusamy | Journal of proteome research | 2013 Jul 5 | 3519-28 | 23731241 |
| Comparison of free serum oxylipin concentrations in hyper- vs. normolipidemic men. | Schuchardt, Jan Philipp; Schmidt, Simone; Kressel, Gaby; Dong, Hua; Willenberg, Ina; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils Helge | Prostaglandins, leukotrienes, and essential fatty acids | 2013 Jul | 19-29 | 23694766 |
| Anti-inflammatory Effects of Omega-3 Polyunsaturated Fatty Acids and Soluble Epoxide Hydrolase Inhibitors in Angiotensin-II Dependent Hypertension. | Ulu, Arzu; Harris, Todd R; Morisseau, Christophe; Miyabe, Christina; Inoue, Hiromi; Schuster, Gertrud; Dong, Hua; Iosif, Ana-Maria; Liu, Jun-Yan; Weiss, Robert H; Chiamvimonvat, Nipavan; Imig, John D; Hammock, Bruce D | Journal of cardiovascular pharmacology | 2013 May 14 | NULL | 23676336 |
| Error Analysis and Propagation in Metabolomics Data Analysis. | Moseley, Hunter N B | Computational and structural biotechnology journal | 2013 Jan 1 | 23667718 | |
| Optimization of harvesting, extraction, and analytical protocols for UPLC-ESI-MS-based metabolomic analysis of adherent mammalian cancer cells. | Bi, Huichang; Krausz, Kristopher W; Manna, Soumen K; Li, Fei; Johnson, Caroline H; Gonzalez, Frank J | Analytical and bioanalytical chemistry | 2013 Jun | 5279-89 | 23604415 |
| Mini-review: Lactoferrin: a bioinspired, anti-biofilm therapeutic. | Ammons, M C; Copie, V | Biofouling | 2013 | 443-55 | 23574002 |
| Loss of FBP1 by Snail-mediated repression provides metabolic advantages in basal-like breast cancer. | Dong, Chenfang; Yuan, Tingting; Wu, Yadi; Wang, Yifan; Fan, Teresa W M; Miriyala, Sumitra; Lin, Yiwei; Yao, Jun; Shi, Jian; Kang, Tiebang; Lorkiewicz, Pawel; St Clair, Daret; Hung, Mien-Chie; Evers, B Mark; Zhou, Binhua P | Cancer cell | 2013 Mar 18 | 316-31 | 23453623 |
| Metabolome response to glucose in the ýý-cell line INS-1 832/13. | Lorenz, Matthew A; El Azzouny, Mahmoud A; Kennedy, Robert T; Burant, Charles F | The Journal of biological chemistry | 2013 Apr 12 | 10923-35 | 23426361 |
| The isotridecanyl side chain of plusbacin-A3 is essential for the transglycosylase inhibition of peptidoglycan biosynthesis. | Kim, Sung Joon; Singh, Manmilan; Wohlrab, Aaron; Yu, Tsyr-Yan; Patti, Gary J; O'Connor, Robert D; VanNieuwenhze, Michael; Schaefer, Jacob | Biochemistry | 2013 Mar 19 | 23421534 | |
| The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors. | Dougherty, Joseph D; Maloney, Susan E; Wozniak, David F; Rieger, Michael A; Sonnenblick, Lisa; Coppola, Giovanni; Mahieu, Nathaniel G; Zhang, Juliet; Cai, Jinlu; Patti, Gary J; Abrahams, Brett S; Geschwind, Daniel H; Heintz, Nathaniel | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 2013 Feb 13; | 2732-53 | 23407934 |
| ZBP-89 regulates expression of tryptophan hydroxylase I and mucosal defense against Salmonella typhimurium in mice. | Essien, Bryan E; Grasberger, Helmut; Romain, Rachael D; Law, David J; Veniaminova, Natalia A; Saqui-Salces, Milena; El-Zaatari, Mohamad; Tessier, Arthur; Hayes, Michael M; Yang, Alexander C; Merchant, Juanita L | Gastroenterology | 2013 Jun | 1466-77, 1477.e1-9 | 23395646 |
| Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database. | Zhu, Zheng-Jiang; Schultz, Andrew W; Wang, Junhua; Johnson, Caroline H; Yannone, Steven M; Patti, Gary J; Siuzdak, Gary | Nature protocols | 2013 Mar | 451-60 | 23391889 |
| Perinatal bisphenol A exposure promotes hyperactivity, lean body composition, and hormonal responses across the murine life course. | Anderson, Olivia S; Peterson, Karen E; Sanchez, Brisa N; Zhang, Zhenzhen; Mancuso, Peter; Dolinoy, Dana C | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 2013 Apr | 1784-92 | 23345456 |
| Mass spectrometry theory and application to adrenal diseases. | Wooding, Kerry M; Auchus, Richard J | Molecular and cellular endocrinology | 2013 May 22 | 201-7 | 23333773 |
| High density lipoprotein is targeted for oxidation by myeloperoxidase in rheumatoid arthritis. | Vivekanandan-Giri, Anuradha; Slocum, Jessica L; Byun, Jaeman; Tang, Chongren; Sands, Robin L; Gillespie, Brenda W; Heinecke, Jay W; Saran, Rajiv; Kaplan, Mariana J; Pennathur, Subramaniam | Annals of the rheumatic diseases | 2013 Jan 12 | NULL | 23313808 |
| Stable isotope- and mass spectrometry-based metabolomics as tools in drug metabolism: a study expanding tempol pharmacology. | Li, Fei; Pang, Xiaoyan; Krausz, Kristopher W; Jiang, Changtao; Chen, Chi; Cook, John A; Krishna, Murali C; Mitchell, James B; Gonzalez, Frank J; Patterson, Andrew D | Journal of proteome research | 2013 Mar 1 | 1369-76 | 23301521 |
| Network motifs provide signatures that characterize metabolism. | Shellman, Erin R; Burant, Charles F; Schnell, Santiago | Molecular bioSystems | 2013 Mar | 352-60 | 23287894 |
| Microbial metabolic exchange in 3D. | Watrous, Jeramie D; Phelan, Vanessa V; Hsu, Cheng-Chih; Moree, Wilna J; Duggan, Brendan M; Alexandrov, Theodore; Dorrestein, Pieter C | The ISME journal | 2013 Apr | 770-80 | 23283018 |
| A view from above: cloud plots to visualize global metabolomic data. | Patti, Gary J; Tautenhahn, Ralf; Rinehart, Duane; Cho, Kevin; Shriver, Leah P; Manchester, Marianne; Nikolskiy, Igor; Johnson, Caroline H; Mahieu, Nathaniel G; Siuzdak, Gary | Analytical chemistry. | 2013 Jan 15; | 798-804 | 23206250 |
| Metabolomics: an essential tool to understand the function of peroxisome proliferator-activated receptor alpha. | Montanez, Jessica E; Peters, Jeffrey M; Correll, Jared B; Gonzalez, Frank J; Patterson, Andrew D | Toxicologic pathology | 2013 Feb | 410-8 | 23197196 |
| A Carbonyl Capture Approach for Profiling Oxidized Metabolites in Cell Extracts. | Mattingly, Stephanie J; Xu, Tao; Nantz, Michael H; Higashi, Richard M; Fan, Teresa W-M | Metabolomics : Official journal of the Metabolomic Society. | 2012; | 989-996 | 23175637 |
| Pulmonary instillation of multi-walled carbon nanotubes promotes coronary vasoconstriction and exacerbates injury in isolated hearts. | Thompson, Leslie C; Frasier, Chad R; Sloan, Ruben C; Mann, Erin E; Harrison, Benjamin S; Brown, Jared M; Brown, David A; Wingard, Christopher J | Nanotoxicology. | 2014 Feb; | 38-49 | 23102262 |
| Decreased glycolytic and tricarboxylic acid cycle intermediates coincide with peripheral nervous system oxidative stress in a murine model of type 2 diabetes. | Hinder, Lucy M; Vivekanandan-Giri, Anuradha; McLean, Lisa L; Pennathur, Subramaniam; Feldman, Eva L | The Journal of endocrinology | 2013 Jan | 41650 | 23086140 |
| Addressing the current bottlenecks of metabolomics: Isotopic Ratio Outlier Analysisýýý, an isotopic-labeling technique for accurate biochemical profiling. | de Jong, Felice A; Beecher, Chris | Bioanalysis. | 2012 Sep; | 2303-14 | 23046270 |
| An accelerated workflow for untargeted metabolomics using the METLIN database. | Tautenhahn, Ralf; Cho, Kevin; Uritboonthai, Winnie; Zhu, Zhengjiang; Patti, Gary J; Siuzdak, Gary | Nature biotechnology. | 2012 Sep; | 826-8 | 22965049 |
| Mammalian target of rapamycin regulates neutrophil extracellular trap formation via induction of hypoxia-inducible factor 1 ýý. | McInturff, Alison M; Cody, Mark J; Elliott, Elizabeth A; Glenn, Jared W; Rowley, Jesse W; Rondina, Matthew T; Yost, Christian C | Blood | 2012 Oct 11 | 3118-25 | 22919032 |
| Association of plasma ýý-3 and ýý-6 lipids with burden of disease measures in bipolar subjects. | Evans, Simon J; Kamali, Masoud; Prossin, Alan R; Harrington, Gloria J; Ellingrod, Vicki L; McInnis, Melvin G; Burant, Charles F | Journal of psychiatric research. | 2012 Nov; | 1435-41 | 22884424 |
| Platelet mRNA: the meaning behind the message. | Rowley, Jesse W; Schwertz, Hansjorg; Weyrich, Andrew S | Current opinion in hematology | 2012 Sep | 385-91 | 22814651 |
| A short-term diet and exercise intervention ameliorates inflammation and markers of metabolic health in overweight/obese children. | Izadpanah, Ali; Barnard, R James; Almeda, Anna Jane E; Baldwin, Gayle C; Bridges, Sydney A; Shellman, Erin R; Burant, Charles F; Roberts, Christian K | American journal of physiology. Endocrinology and metabolism. | 2012 Aug 15; | E542-50 | 22713506 |
| XCMS Online: a web-based platform to process untargeted metabolomic data. | Tautenhahn, Ralf; Patti, Gary J; Rinehart, Duane; Siuzdak, Gary | Analytical chemistry. | 2012 Jun 5; | 5035-9 | 22533540 |
| Metabolomics in the assessment of chemical-induced reproductive and developmental outcomes using non-invasive biological fluids: application to the study of butylbenzyl phthalate. | Sumner, Susan; Snyder, Rodney; Burgess, Jason; Myers, Christina; Tyl, Rochelle; Sloan, Carol; Fennell, Timothy | Journal of applied toxicology : JAT. | 2009 Nov; | 19731247 |